Psyllid ID: psy7035

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70
Protein Sequence
MSFSNVQLYNNISAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGLGIPAEPLFRS
Secondary Structure (PSIPRED)
cccccEEEcccccccEEEEccEEEEEEccccccccEEEEEEEccccccccccccEEEEEEEccccccccc
Secondary Structure Prediction (SSPRO)
ccccccEEEccccccEEEEccEEEEEEEEccccccEEEEEEcccccccccccccEEEccccccccccccc
Coil and Loop (DISEMBL)
MSFSNVQLYNNISAGVIVSNQSLVLQNVSRaraghytcvgsngegdgqsnaqKTAYdiglgipaeplfrs
Flexible Loop (DISEMBL)
MSFSNVQLYNNISAGVIVSNQSLVLQNVSRARAGHYTCVgsngegdgqsnAQKTAYDIGLGIPAEPLFRS
Low Complexity Region (SEG)
MSFSNVQLYNNISAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGLGIPAEPLFRS
Disordered region (IsUnstruct)
*****VQLYNNISAGVIVSNQSLVLQNVSRARAGHYTCVG*****************IGL**********
Disordered Region (DISOPRED)
MSFSNVQLYNNISAGVIVSNQSLVLQNVSRARAGHYTCVGSNGE*****N*QKTAYDIGLGIPAEPLFR*
Disordered Region (DISEMBL)
MSFSNVQLYNNISAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGLGIPAEPLFRS
Disordered Region (DISPRO)
**FSNVQLYNNISAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGLGIPAEPLF**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSFSNVQLYNNISAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGLGIPAEPLFRS
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	70
189239246	929	PREDICTED: similar to AGAP002104-PA [Tri	0.857	0.064	0.622	5e-12
270009768	724	hypothetical protein TcasGA2_TC009065 [T	0.857	0.082	0.622	6e-12
242006755	769	sidestep protein, putative [Pediculus hu	0.671	0.061	0.723	7e-12
170063625	764	conserved hypothetical protein [Culex qu	0.628	0.057	0.795	3e-11
347967191	1055	AGAP002104-PA [Anopheles gambiae str. PE	0.642	0.042	0.777	7e-11
345498415	1061	PREDICTED: hypothetical protein LOC10012	0.614	0.040	0.767	8e-11
157132555	1007	sidestep protein [Aedes aegypti] gi|1088	0.814	0.056	0.603	1e-10
328700301	988	PREDICTED: protein turtle homolog A-like	0.8	0.056	0.612	3e-10
350405962	967	PREDICTED: nephrin-like [Bombus impatien	0.614	0.044	0.697	6e-10
340714738	977	PREDICTED: nephrin-like [Bombus terrestr	0.614	0.044	0.697	6e-10

>gi|189239246|ref|XP_974285.2| PREDICTED: similar to AGAP002104-PA [Tribolium castaneum]

 Score = 75.1 bits (183), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 38/61 (62%), Positives = 45/61 (73%), Gaps = 1/61 (1%)

Query: 7   QLYNNISAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNA-QKTAYDIGLGIPAE 65
           QLYNN  A  IVSNQSLVLQ+++RAR+GHYTCVG N EGDG+SN+ Q     I    PA+
Sbjct: 405 QLYNNAQANTIVSNQSLVLQSITRARSGHYTCVGHNQEGDGESNSVQLDVKFIPTCRPAQ 464

Query: 66  P 66
           P
Sbjct: 465 P 465

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270009768|gb|EFA06216.1| hypothetical protein TcasGA2_TC009065 [Tribolium castaneum]

 Score = 74.7 bits (182), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 38/61 (62%), Positives = 45/61 (73%), Gaps = 1/61 (1%)

Query: 7   QLYNNISAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNA-QKTAYDIGLGIPAE 65
           QLYNN  A  IVSNQSLVLQ+++RAR+GHYTCVG N EGDG+SN+ Q     I    PA+
Sbjct: 107 QLYNNAQANTIVSNQSLVLQSITRARSGHYTCVGHNQEGDGESNSVQLDVKFIPTCRPAQ 166

Query: 66  P 66
           P
Sbjct: 167 P 167

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242006755|ref|XP_002424211.1| sidestep protein, putative [Pediculus humanus corporis] gi|212507565|gb|EEB11473.1| sidestep protein, putative [Pediculus humanus corporis]

 Score = 74.7 bits (182), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 34/47 (72%), Positives = 41/47 (87%)

Query: 4   SNVQLYNNISAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSN 50
           + V L+NN SAG I+SNQSLVLQ+++RARAG YTCVGSN EGDG+SN
Sbjct: 318 NGVTLFNNASAGTIISNQSLVLQSITRARAGLYTCVGSNQEGDGESN 364

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170063625|ref|XP_001867183.1| conserved hypothetical protein [Culex quinquefasciatus] gi|167881191|gb|EDS44574.1| conserved hypothetical protein [Culex quinquefasciatus]

 Score = 72.4 bits (176), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 35/44 (79%), Positives = 39/44 (88%)

Query: 7   QLYNNISAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSN 50
           +L NN S G+IVSNQSLVLQNVSR+RAG YTCVGSN EGDG+SN
Sbjct: 153 ELLNNPSEGIIVSNQSLVLQNVSRSRAGLYTCVGSNQEGDGESN 196

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|347967191|ref|XP_320937.5| AGAP002104-PA [Anopheles gambiae str. PEST] gi|333469717|gb|EAA01274.6| AGAP002104-PA [Anopheles gambiae str. PEST]

 Score = 71.2 bits (173), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 35/45 (77%), Positives = 37/45 (82%)

Query: 7   QLYNNISAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNA 51
           +L NN S GV VSNQSLVLQNVSR RAG YTCVGSN EGDG+SN 
Sbjct: 387 ELVNNPSEGVTVSNQSLVLQNVSRNRAGQYTCVGSNREGDGESNP 431

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345498415|ref|XP_001607365.2| PREDICTED: hypothetical protein LOC100123679 [Nasonia vitripennis]

 Score = 71.2 bits (173), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 33/43 (76%), Positives = 39/43 (90%)

Query: 8   LYNNISAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSN 50
           LY+++++G IVSNQSLVLQNVSR RAG YTCVGSN EGDG+SN
Sbjct: 420 LYHSVASGTIVSNQSLVLQNVSRNRAGVYTCVGSNQEGDGESN 462

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157132555|ref|XP_001656068.1| sidestep protein [Aedes aegypti] gi|108884363|gb|EAT48588.1| AAEL000398-PA [Aedes aegypti]

 Score = 70.9 bits (172), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 38/63 (60%), Positives = 45/63 (71%), Gaps = 6/63 (9%)

Query: 7   QLYNNISAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGLGIPAEP 66
           +L N+ S G+IVSNQSLVLQNVSR+RAG YTCVGSN EGDG+SN       + L I   P
Sbjct: 373 ELLNSPSEGIIVSNQSLVLQNVSRSRAGLYTCVGSNREGDGESNP------VHLDIKFAP 426

Query: 67  LFR 69
           + R
Sbjct: 427 VCR 429

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328700301|ref|XP_001947759.2| PREDICTED: protein turtle homolog A-like [Acyrthosiphon pisum]

 Score = 69.3 bits (168), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 38/62 (61%), Positives = 44/62 (70%), Gaps = 6/62 (9%)

Query: 8   LYNNISAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGLGIPAEPL 67
           L NN +AG IVSNQSLVLQ VSR+RAG YTCVGSN EGDG+SN+      + L I   P+
Sbjct: 407 LNNNPAAGTIVSNQSLVLQKVSRSRAGIYTCVGSNQEGDGESNS------VPLDIKFAPV 460

Query: 68  FR 69
            R
Sbjct: 461 CR 462

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350405962|ref|XP_003487610.1| PREDICTED: nephrin-like [Bombus impatiens]

 Score = 68.2 bits (165), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 30/43 (69%), Positives = 38/43 (88%)

Query: 8   LYNNISAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSN 50
           LY+N + G I+SNQSLVLQ+V+R+RAG YTC+GSN EGDG+SN
Sbjct: 366 LYHNPATGTIISNQSLVLQSVTRSRAGIYTCIGSNQEGDGESN 408

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340714738|ref|XP_003395882.1| PREDICTED: nephrin-like [Bombus terrestris]

 Score = 68.2 bits (165), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 30/43 (69%), Positives = 38/43 (88%)

Query: 8   LYNNISAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSN 50
           LY+N + G I+SNQSLVLQ+V+R+RAG YTC+GSN EGDG+SN
Sbjct: 366 LYHNPATGTIISNQSLVLQSVTRSRAGIYTCIGSNQEGDGESN 408

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	70
FB|FBgn0086604	1201	CG12484 [Drosophila melanogast	0.614	0.035	0.744	1.9e-10
FB|FBgn0259213	1064	CG42313 [Drosophila melanogast	0.671	0.044	0.489	7.3e-05

FB|FBgn0086604 CG12484 [Drosophila melanogaster (taxid:7227)]

 Score = 161 (61.7 bits), Expect = 1.9e-10, P = 1.9e-10
 Identities = 32/43 (74%), Positives = 36/43 (83%)

Query:     8 LYNNISAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSN 50
             L NN + G+ VSNQSLVLQN SRAR+G YTCVGSN EGDG+SN
Sbjct:   422 LTNNPAEGIAVSNQSLVLQNASRARSGIYTCVGSNREGDGESN 464

GO:0005886 "plasma membrane" evidence=ISS

GO:0046331 "lateral inhibition" evidence=IMP

FB|FBgn0259213 CG42313 [Drosophila melanogaster (taxid:7227)]

 Score = 108 (43.1 bits), Expect = 7.3e-05, P = 7.3e-05
 Identities = 23/47 (48%), Positives = 31/47 (65%)

Query:     4 SNVQLYNNISAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSN 50
             + + L +N SA VI SNQSLVLQ +++  AG+Y C   N EG+  SN
Sbjct:   408 NGIHLEHNTSARVIRSNQSLVLQKITKHYAGNYACSAINDEGETVSN 454


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.313   0.130   0.364    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       70        70   0.00091  102 3  11 23  0.37    29
                                                     29  0.41    29


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  463 (49 KB)
  Total size of DFA:  79 KB (2063 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  7.63u 0.19s 7.82t   Elapsed:  00:00:00
  Total cpu time:  7.63u 0.19s 7.82t   Elapsed:  00:00:00
  Start:  Thu Aug 15 17:52:04 2013   End:  Thu Aug 15 17:52:04 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	70
cd04969	73	cd04969, Ig5_Contactin_like, Fifth Ig domain of co	6e-05
pfam13895	80	pfam13895, Ig_2, Immunoglobulin domain	3e-04
smart00408	63	smart00408, IGc2, Immunoglobulin C-2 Type	4e-04
smart00410	85	smart00410, IG_like, Immunoglobulin like	8e-04
smart00409	85	smart00409, IG, Immunoglobulin	8e-04

>gnl|CDD|143170 cd04969, Ig5_Contactin_like, Fifth Ig domain of contactin

 Score = 36.7 bits (85), Expect = 6e-05
 Identities = 12/35 (34%), Positives = 17/35 (48%)

Query: 17 IVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNA 51
          I  + SL + NV+++  G YTC   N  G   S  
Sbjct: 35 IWPDGSLEILNVTKSDEGKYTCFAENFFGKANSTG 69

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neuronal act ivity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 73

>gnl|CDD|206066 pfam13895, Ig_2, Immunoglobulin domain

 Score = 35.1 bits (81), Expect = 3e-04
 Identities = 19/48 (39%), Positives = 23/48 (47%), Gaps = 5/48 (10%)

Query: 5  NVQLYNNISAGVIVSNQS--LVLQNVSRARAGHYTCVGSNGEGDGQSN 50
          N   Y +   GV +S+        NVS   +G YTCV SNG G   SN
Sbjct: 30 NYTWYKD---GVPLSSSQNGFFTPNVSAEDSGTYTCVASNGGGGKTSN 74

This domain contains immunoglobulin-like domains. Length = 80

>gnl|CDD|197706 smart00408, IGc2, Immunoglobulin C-2 Type

 Score = 34.3 bits (79), Expect = 4e-04
 Identities = 11/28 (39%), Positives = 16/28 (57%)

Query: 18 VSNQSLVLQNVSRARAGHYTCVGSNGEG 45
           S  +L +++VS   +G YTCV  N  G
Sbjct: 36 ASGSTLTIKSVSLEDSGLYTCVAENSAG 63

Length = 63

>gnl|CDD|214653 smart00410, IG_like, Immunoglobulin like

 Score = 34.0 bits (78), Expect = 8e-04
 Identities = 11/34 (32%), Positives = 16/34 (47%)

Query: 19 SNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQ 52
          S  +L + NV+   +G YTC  +N  G   S   
Sbjct: 49 STSTLTISNVTPEDSGTYTCAATNSSGSASSGTT 82

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG. Length = 85

>gnl|CDD|214652 smart00409, IG, Immunoglobulin

 Score = 34.0 bits (78), Expect = 8e-04
 Identities = 11/34 (32%), Positives = 16/34 (47%)

Query: 19 SNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQ 52
          S  +L + NV+   +G YTC  +N  G   S   
Sbjct: 49 STSTLTISNVTPEDSGTYTCAATNSSGSASSGTT 82

Length = 85

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	70
cd05762	98	Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of	99.53
cd05740	91	Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domai	99.51
cd05853	85	Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig	99.49
cd05735	88	Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down	99.48
cd05724	86	Ig2_Robo Second immunoglobulin (Ig)-like domain in	99.48
cd05852	73	Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig	99.47
cd04970	85	Ig6_Contactin_like Sixth Ig domain of contactin. I	99.46
cd05854	85	Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig	99.46
cd05892	75	Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like	99.46
cd05738	74	Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-l	99.45
cd05893	75	Ig_Palladin_C C-terminal immunoglobulin (Ig)-like	99.43
cd05744	75	Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain	99.42
cd05867	76	Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like do	99.42
cd05745	74	Ig3_Peroxidasin Third immunoglobulin (Ig)-like dom	99.42
cd04969	73	Ig5_Contactin_like Fifth Ig domain of contactin. I	99.38
cd04975	101	Ig4_SCFR_like Fourth immunoglobulin (Ig)-like doma	99.38
cd05760	77	Ig2_PTK7 Second immunoglobulin (Ig)-like domain of	99.37
cd05848	94	Ig1_Contactin-5 First Ig domain of contactin-5. Ig	99.37
cd05850	94	Ig1_Contactin-2 First Ig domain of contactin-2. Ig	99.37
cd04978	76	Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like	99.35
cd04976	71	Ig2_VEGFR Second immunoglobulin (Ig)-like domain o	99.35
cd05723	71	Ig4_Neogenin Fourth immunoglobulin (Ig)-like domai	99.34
cd04971	81	Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of	99.34
cd05748	74	Ig_Titin_like Immunoglobulin (Ig)-like domain of t	99.33
cd05865	96	Ig1_NCAM-1 First immunoglobulin (Ig)-like domain o	99.33
cd05866	92	Ig1_NCAM-2 First immunoglobulin (Ig)-like domain o	99.33
cd05876	71	Ig3_L1-CAM Third immunoglobulin (Ig)-like domain o	99.33
cd05734	79	Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain	99.32
cd05868	76	Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain o	99.32
cd05737	92	Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-	99.32
cd05855	79	Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of T	99.31
cd04977	92	Ig1_NCAM-1_like First immunoglobulin (Ig)-like dom	99.3
cd05864	70	Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain	99.3
cd05730	95	Ig3_NCAM-1_like Third immunoglobulin (Ig)-like dom	99.3
cd05859	101	Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like do	99.29
cd05863	67	Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain	99.29
cd05851	88	Ig3_Contactin-1 Third Ig domain of contactin-1. Ig	99.28
cd05746	69	Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like do	99.28
cd05849	93	Ig1_Contactin-1 First Ig domain of contactin-1. Ig	99.28
cd05722	95	Ig1_Neogenin First immunoglobulin (Ig)-like domain	99.27
cd05763	75	Ig_1 Subgroup of the immunoglobulin (Ig) superfami	99.27
cd05725	69	Ig3_Robo Third immunoglobulin (Ig)-like domain in	99.27
cd07693	100	Ig1_Robo First immunoglobulin (Ig)-like domain in	99.27
cd05733	77	Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like dom	99.26
cd05874	77	Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of	99.26
cd04967	91	Ig1_Contactin First Ig domain of contactin. Ig1_Co	99.26
cd05726	90	Ig4_Robo Fhird immunoglobulin (Ig)-like domain in	99.26
cd05857	85	Ig2_FGFR Second immunoglobulin (Ig)-like domain of	99.26
cd05875	77	Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-li	99.26
cd05894	86	Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of card	99.25
cd04973	79	Ig1_FGFR First immunoglobulin (Ig)-like domain of	99.25
cd05764	74	Ig_2 Subgroup of the immunoglobulin (Ig) superfami	99.24
cd05728	85	Ig4_Contactin-2-like Fourth Ig domain of the neura	99.24
cd05743	78	Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domai	99.23
cd07702	72	Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain	99.23
cd05731	71	Ig3_L1-CAM_like Third immunoglobulin (Ig)-like dom	99.23
cd05773	109	Ig8_hNephrin_like Eighth immunoglobulin-like domai	99.22
cd04968	88	Ig3_Contactin_like Third Ig domain of contactin. I	99.21
cd05736	76	Ig2_Follistatin_like Second immunoglobulin (Ig)-li	99.2
cd05856	82	Ig2_FGFRL1-like Second immunoglobulin (Ig)-like do	99.2
cd05757	92	Ig2_IL1R_like Second immunoglobulin (Ig)-like doma	99.19
cd05756	94	Ig1_IL1R_like First immunoglobulin (Ig)-like domai	99.16
cd05891	92	Ig_M-protein_C C-terminal immunoglobulin (Ig)-like	99.15
PF07679	90	I-set: Immunoglobulin I-set domain; InterPro: IPR0	99.13
cd05858	90	Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain o	99.13
KOG3513|consensus	1051		99.12
cd04974	90	Ig3_FGFR Third immunoglobulin (Ig)-like domain of	99.12
cd04972	90	Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) o	99.1
cd05750	75	Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain	99.09
cd05747	92	Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like	99.09
cd05869	97	Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain o	99.08
cd05895	76	Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domai	99.03
cd05897	95	Ig2_IL1R2_like Second immunoglobulin (Ig)-like dom	99.03
cd05765	81	Ig_3 Subgroup of the immunoglobulin (Ig) superfami	99.02
cd04979	89	Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of	99.01
cd05870	98	Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain o	99.01
cd05727	96	Ig2_Contactin-2-like Second Ig domain of the neura	99.0
cd05753	83	Ig2_FcgammaR_like Second immunoglobulin (Ig)-like	99.0
cd05752	78	Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like do	98.99
KOG4222|consensus	1281		98.99
cd05732	96	Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like dom	98.98
cd05873	87	Ig_Sema4D_like Immunoglobulin (Ig)-like domain of	98.94
KOG3513|consensus	1051		98.93
cd05749	81	Ig2_Tyro3_like Second immunoglobulin (Ig)-like dom	98.91
cd05739	69	Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-li	98.91
cd05774	105	Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain	98.89
cd05758	98	Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like do	98.89
cd05742	84	Ig1_VEGFR_like First immunoglobulin (Ig)-like doma	98.83
cd05729	85	Ig2_FGFR_like Second immunoglobulin (Ig)-like doma	98.83
cd05861	84	Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like	98.83
smart00408	63	IGc2 Immunoglobulin C-2 Type.	98.79
PHA02826	227	IL-1 receptor-like protein; Provisional	98.78
cd05862	86	Ig1_VEGFR First immunoglobulin (Ig)-like domain of	98.72
smart00410	86	IG_like Immunoglobulin like. IG domains that canno	98.72
smart00409	86	IG Immunoglobulin.	98.72
cd05882	95	Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-	98.69
cd05754	85	Ig3_Perlecan_like Third immunoglobulin (Ig)-like d	98.69
cd05741	92	Ig_CEACAM_D1_like First immunoglobulin (Ig)-like d	98.67
cd05871	91	Ig_Semaphorin_classIII Immunoglobulin (Ig)-like do	98.66
cd07701	95	Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-	98.59
cd05775	97	Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)	98.58
cd05771	139	IgC_Tapasin_R Tapasin-R immunoglobulin-like domain	98.57
cd05896	104	Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like	98.56
KOG4221|consensus	1381		98.55
PF13895	80	Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V	98.53
cd05886	99	Ig1_Nectin-1_like First immunoglobulin (Ig) domain	98.52
cd05888	100	Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain	98.51
PHA02826	227	IL-1 receptor-like protein; Provisional	98.5
cd05845	95	Ig2_L1-CAM_like Second immunoglobulin (Ig)-like do	98.5
PHA02785	326	IL-beta-binding protein; Provisional	98.49
cd05713	100	Ig_MOG_like Immunoglobulin (Ig)-like domain of mye	98.49
cd05751	91	Ig1_LILRB1_like First immunoglobulin (Ig)-like dom	98.47
PF00047	64	ig: Immunoglobulin domain The Prosite family only	98.44
cd05885	80	Ig2_Necl-4 Second immunoglobulin (Ig)-like domain	98.42
cd05879	116	Ig_P0 Immunoglobulin (Ig)-like domain of Protein z	98.42
cd05759	82	Ig2_KIRREL3-like Second immunoglobulin (Ig)-like d	98.37
cd05718	98	Ig1_PVR_like First immunoglobulin (Ig) domain of p	98.37
PHA02785	326	IL-beta-binding protein; Provisional	98.36
cd05717	95	Ig1_Necl-1-3_like First (N-terminal) immunoglobuli	98.34
cd05714	106	Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of cho	98.3
cd05898	98	Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain	98.3
KOG4221|consensus	1381		98.27
cd05887	96	Ig1_Nectin-3_like First immunoglobulin (Ig) domain	98.27
cd05877	106	Ig_LP_like Immunoglobulin (Ig)-like domain of huma	98.24
PF13927	75	Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1V	98.23
cd05715	116	Ig_P0-like Immunoglobulin (Ig)-like domain of Prot	98.21
cd05880	115	Ig_EVA1 Immunoglobulin (Ig)-like domain of epithel	98.2
KOG4194|consensus	873		98.19
cd05872	85	Ig_Sema4B_like Immunoglobulin (Ig)-like domain of	98.16
PHA02633	63	hypothetical protein; Provisional	98.15
cd05846	97	Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain	98.13
cd05900	112	Ig_Aggrecan Immunoglobulin (Ig)-like domain of the	98.1
cd05881	95	Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-	98.09
cd07690	94	Ig1_CD4 First immunoglobulin (Ig) domain of CD4. I	98.09
cd05878	110	Ig_Aggrecan_like Immunoglobulin (Ig)-like domain o	98.07
PF07686	114	V-set: Immunoglobulin V-set domain; InterPro: IPR0	98.05
cd05889	96	Ig1_DNAM-1_like First immunoglobulin (Ig) domain o	97.93
cd05902	110	Ig_Neurocan Immunoglobulin (Ig)-like domain of the	97.92
cd00099	105	IgV Immunoglobulin variable domain (IgV). IgV: Imm	97.9
cd04983	109	IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V	97.88
KOG4194|consensus	873		97.87
cd05901	117	Ig_Versican Immunoglobulin (Ig)-like domain of the	97.86
cd05860	101	Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of	97.67
cd04984	98	IgV_L_lambda Immunoglobulin (Ig) lambda light chai	97.65
cd04980	106	IgV_L_kappa Immunoglobulin (Ig) light chain, kappa	97.63
cd05883	82	Ig2_Necl-2 Second immunoglobulin (Ig)-like domain	97.6
cd05899	110	IgV_TCR_beta Immunoglobulin (Ig) variable (V) doma	97.51
cd05716	98	Ig_pIgR Immunoglobulin (Ig)-like domain in the pol	97.51
PHA02987	189	Ig domain OX-2-like protein; Provisional	97.45
cd05720	104	Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD	97.42
cd07700	107	IgV_CD8_beta Immunoglobulin (Ig) like domain of CD	97.41
PF11465	108	Receptor_2B4: Natural killer cell receptor 2B4; In	97.37
KOG4222|consensus	1281		97.34
KOG1480|consensus	909		97.23
cd07691	69	Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain	97.2
smart00406	81	IGv Immunoglobulin V-Type.	97.19
cd05711	94	Ig_FcalphaRI Immunoglobulin (IG)-like domain of of	97.18
cd07706	116	IgV_TCR_delta Immunoglobulin (Ig) variable (V) dom	97.12
cd04982	116	IgV_TCR_gamma Immunoglobulin (Ig) variable (V) dom	97.08
cd00096	74	Ig Immunoglobulin domain. Ig: immunoglobulin (Ig)	97.03
PF07354	271	Sp38: Zona-pellucida-binding protein (Sp38); Inter	96.97
cd07705	83	Ig2_Necl-1 Second immunoglobulin (Ig)-like domain	96.88
cd05761	82	Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like	96.74
cd05712	119	Ig_Siglec_N Immunoglobulin (Ig) domain at the N te	96.64
cd00098	95	IgC Immunoglobulin Constant domain. IgC: Immunoglo	96.4
cd04981	117	IgV_H Immunoglobulin (Ig) heavy chain (H), variabl	96.15
cd05884	83	Ig2_Necl-3 Second immunoglobulin (Ig)-like domain	95.26
KOG3515|consensus	741		95.16
PHA03376	221	BARF1; Provisional	94.71
PHA03282	540	envelope glycoprotein E; Provisional	94.08
cd05721	115	IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic	93.51
cd07692	65	Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of	92.05
cd05755	100	Ig2_ICAM-1_like Second immunoglobulin (Ig)-like do	91.62
PHA03283	542	envelope glycoprotein E; Provisional	91.58
smart00407	75	IGc1 Immunoglobulin C-Type.	91.27
PF02480	439	Herpes_gE: Alphaherpesvirus glycoprotein E; InterP	91.19
KOG3515|consensus	741		90.78
cd07694	88	Ig2_CD4 Second immunoglobulin (Ig) domain of CD4.	90.68
PF05790	80	C2-set: Immunoglobulin C2-set domain; InterPro: IP	90.45
KOG4597|consensus	560		89.44
PHA02982	251	hypothetical protein; Provisional	89.24
PF08204	130	V-set_CD47: CD47 immunoglobulin-like domain; Inter	89.14
PHA03286	492	envelope glycoprotein E; Provisional	88.5
cd07703	95	Ig2_Nectin-2_like Second immunoglobulin (Ig) domai	86.6
cd05719	95	Ig2_PVR_like Second immunoglobulin (Ig) domain of	86.59
cd05770	93	IgC_beta2m Class I major histocompatibility comple	85.51
cd05772	111	IgC_SIRP Signal-regulatory protein (SIRP) immunogl	84.99
cd07698	93	IgC_MHC_I_alpha3 Class I major histocompatibility	83.19
PHA03042	286	CD47-like protein; Provisional	81.77
cd07697	96	IgC_TCR_gamma T cell receptor (TCR) gamma chain co	80.86
PHA02914	500	Immunoglobulin-like domain protein; Provisional	80.24

>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK)

Probab=99.53  E-value=5.3e-14  Score=82.43  Aligned_cols=61  Identities=15%  Similarity=0.061  Sum_probs=47.9

Q ss_pred             cccCeEcCcCccceEEe--cCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeCCCCC
Q psy7035           2 SFSNVQLYNNISAGVIV--SNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGLGIP   63 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~~--~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~p~~~   63 (70)
                      +|||++|..+.+..+..  ...+|+|.++.++|+|.|+|.|+|..|+... .+.|.|...|+.|
T Consensus        35 ~kdg~~l~~~~~~~~~~~~~~s~L~I~~~~~~D~G~Ytc~a~N~~G~~~~-~~~l~V~~~P~pP   97 (98)
T cd05762          35 MKFRKQIQEGEGIKIENTENSSKLTITEGQQEHCGCYTLEVENKLGSRQA-QVNLTVVDKPDPP   97 (98)
T ss_pred             EECCEEecCCCcEEEEecCCeeEEEECCCChhhCEEEEEEEEcCCCceeE-EEEEEEecCCCCC
Confidence            58899997554433332  3468999999999999999999999999766 7999999555444

Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has

>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=99.51  E-value=6e-14  Score=81.32  Aligned_cols=55  Identities=24%  Similarity=0.324  Sum_probs=45.6

Q ss_pred             cccCeEcCcCccceEEecCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEE
Q psy7035           2 SFSNVQLYNNISAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYD   57 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~   57 (70)
                      +|||.++..+ +..+...+++|+|.+++++|+|.|+|.|.|..|...|.++.|.|.
T Consensus        37 ~kng~~l~~~-~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~S~~~~L~V~   91 (91)
T cd05740          37 VNNGSLLVPP-RLQLSNDNRTLTFNNVTRSDTGHYQCEASNEVSNMTSDPYILNVN   91 (91)
T ss_pred             EECCEECCCC-CEEEeCCCCEEEECcCChhhCEEEEEEEEcCCCCEEeeeEEEEeC
Confidence            5788877543 333344567999999999999999999999999999999999984

Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the

>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4

Probab=99.49  E-value=8.4e-14  Score=80.52  Aligned_cols=58  Identities=19%  Similarity=0.139  Sum_probs=45.9

Q ss_pred             cccCeEcCc--CccceEEe----cCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeCC
Q psy7035           2 SFSNVQLYN--NISAGVIV----SNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGL   60 (70)
Q Consensus         2 ~~ng~~l~~--~~~~~~~~----~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~p   60 (70)
                      +|||++|..  +..+..+.    ++++|+|.+++..|+|.|+|.|+|.+++. +.++.|.|+.+|
T Consensus        22 ~~dg~~i~~~~~~~~~~~~~~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~-~a~a~L~V~~pP   85 (85)
T cd05853          22 SFNGHLIDFQKDGDHFERVGGQDSAGDLMIRSIQLKHAGKYVCMVQTSVDKL-SAAADLIVRGPP   85 (85)
T ss_pred             EECCEECcccCCCccEEEeccCCCCCcEEEecCCHHHCEEEEEEEEcccCce-EEEEEEEEecCC
Confidence            589999963  33343332    46789999999999999999999999986 557899998544

Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.

>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=99.48  E-value=2.1e-13  Score=78.34  Aligned_cols=60  Identities=13%  Similarity=0.158  Sum_probs=44.5

Q ss_pred             cccCeEcCcCccce-EEe---c---CCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeCCCC
Q psy7035           2 SFSNVQLYNNISAG-VIV---S---NQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGLGI   62 (70)
Q Consensus         2 ~~ng~~l~~~~~~~-~~~---~---~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~p~~   62 (70)
                      +|||+++..+..+. +..   .   ..+|.|.+++++|+|.|+|.|+|..|... ..+.|.|...|+.
T Consensus        21 ~k~~~~i~~~~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~-~~~~L~V~~~P~~   87 (88)
T cd05735          21 EKEDRIINPEMSRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGEDR-GIIQLTVQEPPDP   87 (88)
T ss_pred             eeCCEECCCCCCcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCcce-EEEEEEEeCCCCC
Confidence            46777775443333 221   1   15799999999999999999999999865 4789999955553

Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.48  E-value=1.5e-13  Score=77.24  Aligned_cols=55  Identities=22%  Similarity=0.345  Sum_probs=46.1

Q ss_pred             cccCeEcCcCccceEEecCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEE
Q psy7035           2 SFSNVQLYNNISAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAY   56 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V   56 (70)
                      +|||+++.....+..+..+++|.|.+++++|+|.|+|.|.|..|...+..+.|.|
T Consensus        32 ~k~g~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~l~V   86 (86)
T cd05724          32 RKDGQPLNLDNERVRIVDDGNLLIAEARKSDEGTYKCVATNMVGERESAAARLSV   86 (86)
T ss_pred             EECCEECCCCCCCEEEccCCEEEEeECCcccCEEEEEEEEeccCceeeeeEEEEC
Confidence            5788888764444445567899999999999999999999999999998888875

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago

>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1

Probab=99.47  E-value=1.7e-13  Score=76.54  Aligned_cols=53  Identities=28%  Similarity=0.365  Sum_probs=42.6

Q ss_pred             cccCeEcCcCccceEEecCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEE
Q psy7035           2 SFSNVQLYNNISAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAY   56 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V   56 (70)
                      +|||+++..+. +..+..+++|.|.+++++|+|.|+|.|+|..|+..+ .+.|.|
T Consensus        21 ~k~~~~l~~~~-r~~~~~~g~L~I~~v~~~D~G~Y~C~A~N~~G~~~~-~~~l~~   73 (73)
T cd05852          21 SKGTELLVNNS-RISIWDDGSLEILNITKLDEGSYTCFAENNRGKANS-TGVLSV   73 (73)
T ss_pred             EeCCEecccCC-CEEEcCCCEEEECcCChhHCEEEEEEEECCCCceeE-EEEEEC
Confidence            57787776543 445568899999999999999999999999998765 566654

Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin

Probab=99.46  E-value=1.4e-13  Score=78.00  Aligned_cols=58  Identities=24%  Similarity=0.244  Sum_probs=44.4

Q ss_pred             cccCeEcCcCcc------ceEEecCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeCC
Q psy7035           2 SFSNVQLYNNIS------AGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGL   60 (70)
Q Consensus         2 ~~ng~~l~~~~~------~~~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~p   60 (70)
                      +|||++|.....      ......+++|.|.+++.+|+|.|+|.|+|..|.. +..+.|.|..+|
T Consensus        22 ~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~-~~~~~l~V~~pP   85 (85)
T cd04970          22 SFNGVPIDFDKDGGHYRRVGGKDSNGDLMIRNAQLKHAGKYTCTAQTVVDSL-SASADLIVRGPP   85 (85)
T ss_pred             EECCeEeeccCCCccEEEEecccccceEEEccCCHHhCeeeEEEEecCCCcE-EEEEEEEEECCC
Confidence            468888853221      1122357899999999999999999999999986 558899998554

Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2

Probab=99.46  E-value=1.7e-13  Score=78.32  Aligned_cols=57  Identities=16%  Similarity=0.148  Sum_probs=43.3

Q ss_pred             cccCeEcCcCc--cceEE----ecCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeC
Q psy7035           2 SFSNVQLYNNI--SAGVI----VSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIG   59 (70)
Q Consensus         2 ~~ng~~l~~~~--~~~~~----~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~   59 (70)
                      +|||++|....  .+..+    ...++|+|.+++..|+|.|+|.|.|.+|+..+ .+.|.|...
T Consensus        22 ~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~-~~~L~V~~~   84 (85)
T cd05854          22 SLDDFPIDLDKPNGHYRRMEVKETIGDLVIVNAQLSHAGTYTCTAQTVVDSASA-SATLVVRGP   84 (85)
T ss_pred             EECCeEccccCCCCcEEEEEecceEeEEEEccCChhhCeEEEEEEecCCCCEEE-EEEEEEECC
Confidence            57888885421  12111    13579999999999999999999999998655 789999843

Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin

Probab=99.46  E-value=2.1e-13  Score=76.81  Aligned_cols=54  Identities=22%  Similarity=0.273  Sum_probs=41.3

Q ss_pred             cccCeEcCcCccce-EEecC-C--EEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEE
Q psy7035           2 SFSNVQLYNNISAG-VIVSN-Q--SLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAY   56 (70)
Q Consensus         2 ~~ng~~l~~~~~~~-~~~~~-~--tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V   56 (70)
                      +|||++|..+..+. +..++ +  +|.|.+++++|+|.|+|.|.|..|+..+ .+.|.|
T Consensus        18 ~k~~~~i~~~~~r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~-~a~L~V   75 (75)
T cd05892          18 KRNNEMVQYNTDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVNEAGVATC-HARLDV   75 (75)
T ss_pred             EECCEECcCCCCeEEEEEcCCCcEEEEECCCChhhCEEEEEEEEcCcCeEEE-EEEEeC
Confidence            58899887543333 33333 3  8999999999999999999999998766 567765

Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.

>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=99.45  E-value=3.1e-13  Score=75.08  Aligned_cols=56  Identities=16%  Similarity=0.202  Sum_probs=46.3

Q ss_pred             cccCeEcCc-CccceEEecCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEE
Q psy7035           2 SFSNVQLYN-NISAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYD   57 (70)
Q Consensus         2 ~~ng~~l~~-~~~~~~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~   57 (70)
                      +|||.++.. .+.+.....+++|.|.+++.+|+|.|+|.|.|..|...+..+.|.|.
T Consensus        18 ~k~~~~~~~~~~~~~~~~~~g~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l~v~   74 (74)
T cd05738          18 FKDFLPVDTTSNGRIKQLRSGALQIENSEESDQGKYECVATNSAGTRYSAPANLYVR   74 (74)
T ss_pred             EECCEECccCCCCCEEEcCCcEEEECCCChhhCEEEEEEEECCCCceEcccEEEEEC
Confidence            578888763 23344456788999999999999999999999999999999999873

Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.

>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin

Probab=99.43  E-value=4e-13  Score=75.47  Aligned_cols=54  Identities=20%  Similarity=0.250  Sum_probs=41.1

Q ss_pred             cccCeEcCcCccceEEecC--C--EEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEE
Q psy7035           2 SFSNVQLYNNISAGVIVSN--Q--SLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAY   56 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~~~~--~--tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V   56 (70)
                      +|||+++..+..+.....+  +  +|.|.+++.+|+|.|+|.|.|..|+..+ .+.|.|
T Consensus        18 ~k~~~~l~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~-~a~L~V   75 (75)
T cd05893          18 KKENESLTHNTDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKNEAGIVSC-TARLDV   75 (75)
T ss_pred             EECCEECCCCCCeEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEE-EEEEeC
Confidence            5788888754433333222  2  6999999999999999999999998755 677765

Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.

>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin

Probab=99.42  E-value=7.5e-13  Score=73.96  Aligned_cols=54  Identities=22%  Similarity=0.241  Sum_probs=41.1

Q ss_pred             cccCeEcCcCccceEEecC--C--EEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEE
Q psy7035           2 SFSNVQLYNNISAGVIVSN--Q--SLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAY   56 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~~~~--~--tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V   56 (70)
                      +|||+++..+..+..+..+  +  +|.|.+++++|+|.|+|.|.|..|+..+ .+.|.|
T Consensus        18 ~k~~~~i~~~~~r~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~-~~~l~v   75 (75)
T cd05744          18 KKNNEMLTYNTDRISLYQDNCGRICLLIQNANKEDAGWYTVSAVNEAGVVSC-NARLDV   75 (75)
T ss_pred             EECCEECCCCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCcEEE-EEEEeC
Confidence            5889988754333333222  2  6999999999999999999999998755 577765

Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).

>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.42  E-value=9e-13  Score=73.35  Aligned_cols=54  Identities=19%  Similarity=0.265  Sum_probs=43.3

Q ss_pred             cccCeEcCcCc-cceEEecCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEE
Q psy7035           2 SFSNVQLYNNI-SAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAY   56 (70)
Q Consensus         2 ~~ng~~l~~~~-~~~~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V   56 (70)
                      +|||+++.... .......+++|.|.+++++|+|.|+|.|+|..|...+ .+.|.|
T Consensus        21 ~k~g~~i~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~-~~~l~V   75 (76)
T cd05867          21 SINGAPIEGTDPDPRRHVSSGALILTDVQPSDTAVYQCEARNRHGNLLA-NAHVHV   75 (76)
T ss_pred             EECCEECCCCCCCceEEeeCCEEEECCCChhhCEEEEEEEECCCCeEEE-EEEEEE
Confidence            57888886432 2234567889999999999999999999999998755 677776

Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.42  E-value=5.5e-13  Score=73.89  Aligned_cols=53  Identities=19%  Similarity=0.291  Sum_probs=42.7

Q ss_pred             cccCeEcCcCccceEEecCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEE
Q psy7035           2 SFSNVQLYNNISAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAY   56 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V   56 (70)
                      +|||.++..+. +..+..+++|+|.+++++|+|.|+|.|.|..|...+ .+.|.|
T Consensus        22 ~k~g~~~~~~~-~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~-~~~L~V   74 (74)
T cd05745          22 TKGGSQLSVDR-RHLVLSSGTLRISRVALHDQGQYECQAVNIVGSQRT-VAQLTV   74 (74)
T ss_pred             EECCEECCCCC-CeEEccCCeEEEeeCCHHhCEEEEEEEEeCCCceeE-EEEEeC
Confidence            47888886553 344567889999999999999999999999998655 677765

Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.

>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin

Probab=99.38  E-value=1.1e-12  Score=72.33  Aligned_cols=53  Identities=28%  Similarity=0.320  Sum_probs=42.1

Q ss_pred             cccCeEcCcCccceEEecCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEE
Q psy7035           2 SFSNVQLYNNISAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAY   56 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V   56 (70)
                      +|+++++..+.+ ..+..+++|.|.+++++|+|.|+|.|.|..|...+ ++.|.|
T Consensus        21 ~k~~~~~~~~~~-~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~-~~~l~V   73 (73)
T cd04969          21 SKGTELLTNSSR-ICIWPDGSLEILNVTKSDEGKYTCFAENFFGKANS-TGSLSV   73 (73)
T ss_pred             EECCEEcccCCC-EEECCCCeEEEccCChhHCEEEEEEEECCCCceEE-EEEEEC
Confidence            467787765543 34557789999999999999999999999998655 566664

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins

Probab=99.38  E-value=1.5e-12  Score=77.03  Aligned_cols=55  Identities=24%  Similarity=0.305  Sum_probs=43.3

Q ss_pred             cccCeEcCcCccceEEec-------CCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEE
Q psy7035           2 SFSNVQLYNNISAGVIVS-------NQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYD   57 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~~~-------~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~   57 (70)
                      +|||.+|..+....+...       ..+|.|.+++++|+|.|+|.|+|..|.. +..+.|.|+
T Consensus        39 ~Kdg~~i~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~G~~-~~t~~L~V~  100 (101)
T cd04975          39 TYDNRTLTNKLTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSDASK-SLTFELYVN  100 (101)
T ss_pred             EeCCeeCCCCcceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCCccE-EEEEEEEEE
Confidence            689999986544333322       3689999999999999999999999974 557888876

Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes

>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4

Probab=99.37  E-value=3.3e-12  Score=71.50  Aligned_cols=56  Identities=18%  Similarity=0.170  Sum_probs=43.7

Q ss_pred             cccCeEcCcCccce-EEecCCEEEEcccCCCCCeeeEEEeEeCCCcccc-eeEEEEEE
Q psy7035           2 SFSNVQLYNNISAG-VIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQS-NAQKTAYD   57 (70)
Q Consensus         2 ~~ng~~l~~~~~~~-~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s-~~~~L~V~   57 (70)
                      +|||+++....... +...+++|+|.+++++|+|.|+|.|.|..|...+ ..++|.|.
T Consensus        18 ~k~g~~l~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~l~v~   75 (77)
T cd05760          18 FRDGTPLSDGQGNYSVSSKERTLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNFTLSII   75 (77)
T ss_pred             EECCEECCCCCccEEEeCCCCEEEEeeCCcccCEEEEEEEEeCCCeEeeCceEEEEEe
Confidence            57899886544333 3334579999999999999999999999998754 46788775

Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s

>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5

Probab=99.37  E-value=2.2e-12  Score=74.86  Aligned_cols=54  Identities=17%  Similarity=0.236  Sum_probs=43.7

Q ss_pred             cccCeEcCcCccceEEecCCEEEEcccC-CCCCeeeEEEeEeCCCcccceeEEEE
Q psy7035           2 SFSNVQLYNNISAGVIVSNQSLVLQNVS-RARAGHYTCVGSNGEGDGQSNAQKTA   55 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~~~~~tL~i~~v~-~~D~G~Y~C~a~N~~G~~~s~~~~L~   55 (70)
                      +|||.+|.........+.+++|.|.++. ++|+|.|+|.|+|.+|+..|..+.|.
T Consensus        39 ~k~g~~l~~~~~~~~~~~~g~L~i~~~~~~~D~G~Y~C~A~N~~G~~~S~~~~l~   93 (94)
T cd05848          39 LRNGTEIDTESDYRYSLIDGNLIISNPSEVKDSGRYQCLATNSIGSILSREALLQ   93 (94)
T ss_pred             EECCeECccCCCceEEeeCCeEEEccCCccCcCEEEEEEEEcCCCeEEeccEEEe
Confidence            5789988644333455678899999985 69999999999999999988887764

Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.

>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2

Probab=99.37  E-value=3.2e-12  Score=74.07  Aligned_cols=54  Identities=19%  Similarity=0.257  Sum_probs=43.5

Q ss_pred             cccCeEcCcCccceEEecCCEEEEcccC-CCCCeeeEEEeEeCCCcccceeEEEE
Q psy7035           2 SFSNVQLYNNISAGVIVSNQSLVLQNVS-RARAGHYTCVGSNGEGDGQSNAQKTA   55 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~~~~~tL~i~~v~-~~D~G~Y~C~a~N~~G~~~s~~~~L~   55 (70)
                      ++||+++.........+.+++|.|.++. ..|+|.|+|.|+|..|...|..+.|.
T Consensus        39 ~~~g~~l~~~~~~~~~~~~g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s~~a~l~   93 (94)
T cd05850          39 KMNGTEIKFAPESRYTLVAGNLVINNPQKARDAGSYQCLAINRCGTVVSREANLR   93 (94)
T ss_pred             EECCEECccCCCceEEEECCeEEEccCCccCcCEEEEEEEEcCcCcEEEEEEEEe
Confidence            5788888644333445568899999875 59999999999999999999888774

Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)

Probab=99.35  E-value=3.9e-12  Score=70.02  Aligned_cols=54  Identities=20%  Similarity=0.199  Sum_probs=42.9

Q ss_pred             cccCeEcCcCcc-ceEEecCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEE
Q psy7035           2 SFSNVQLYNNIS-AGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAY   56 (70)
Q Consensus         2 ~~ng~~l~~~~~-~~~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V   56 (70)
                      ++||+++..... ......+++|+|.+++++|+|.|+|.|+|..|...+ .+.|.|
T Consensus        21 ~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~-~~~l~V   75 (76)
T cd04978          21 RLNGVPIEELPPDPRRRVDGGTLILSNVQPNDTAVYQCNASNVHGYLLA-NAFVHV   75 (76)
T ss_pred             EECCEECCCCCCcceEEccCCEEEECCCChhhCEEEEEEEEccCCeEEE-eEEEEE
Confidence            478888865432 234567889999999999999999999999998654 677776

Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR)

Probab=99.35  E-value=2.6e-12  Score=71.08  Aligned_cols=52  Identities=19%  Similarity=0.185  Sum_probs=40.9

Q ss_pred             cccCeEcCcCccceEEecCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEE
Q psy7035           2 SFSNVQLYNNISAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAY   56 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V   56 (70)
                      +|||+++..+.  .....+++|.|.+++.+|+|.|+|.|.|..|.. +..+.+.|
T Consensus        18 ~k~g~~l~~~~--~~~~~~~~L~I~~v~~~D~G~YtC~a~N~~g~~-~~~~~~~~   69 (71)
T cd04976          18 YKNGKLISEKN--RTKKSGHSLTIKDVTEEDAGNYTVVLTNKQAKL-EKRLTFTL   69 (71)
T ss_pred             EECCEECCCCC--EEEcCCCEEEECcCCHHHCEEEEEEEEcCCccE-EEEEEEEE
Confidence            58899987653  345677899999999999999999999999874 33455554

Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa

>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=99.34  E-value=3.6e-12  Score=70.26  Aligned_cols=53  Identities=17%  Similarity=0.253  Sum_probs=41.6

Q ss_pred             cccCeEcCcCccceEEecCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEE
Q psy7035           2 SFSNVQLYNNISAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAY   56 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V   56 (70)
                      +|||.++....+ ..+..+++|.|.+++++|+|.|+|.|+|..|+..+ .+.|.|
T Consensus        19 ~k~g~~~~~~~~-~~~~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~-~~~L~V   71 (71)
T cd05723          19 VKNGDMVIPSDY-FKIVKEHNLQVLGLVKSDEGFYQCIAENDVGNVQA-SAQLII   71 (71)
T ss_pred             EECCeECCCCCC-EEEEecCCEEEEcCCcccCEEEEEEEEcCCCEEEE-EEEEEC
Confidence            478888765443 34456788999999999999999999999998654 566654

Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=99.34  E-value=4.9e-12  Score=71.99  Aligned_cols=48  Identities=21%  Similarity=0.204  Sum_probs=37.2

Q ss_pred             cccCeEcCcCccceEE---------ecCCEEEEcccCCCCCeeeEEEeEeCCCcccc
Q psy7035           2 SFSNVQLYNNISAGVI---------VSNQSLVLQNVSRARAGHYTCVGSNGEGDGQS   49 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~---------~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s   49 (70)
                      +|||++|..+......         ...++|+|.+++++|+|.|+|.|+|..|+..+
T Consensus        18 ~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~   74 (81)
T cd04971          18 YHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQDSK   74 (81)
T ss_pred             EECCEECcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCeee
Confidence            6899999765433222         12457999999999999999999999998644

TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun

>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins

Probab=99.33  E-value=7.5e-12  Score=68.98  Aligned_cols=54  Identities=26%  Similarity=0.262  Sum_probs=41.2

Q ss_pred             cccCeEcCcCccceEEe--cCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEE
Q psy7035           2 SFSNVQLYNNISAGVIV--SNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAY   56 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~~--~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V   56 (70)
                      +|||.++..+.+..+..  ...+|.|.+++++|+|.|+|.|+|..|.. +..+.|.|
T Consensus        19 ~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~-~~~~~l~V   74 (74)
T cd05748          19 SKDGKPLKLSGRVQIETTASSTSLVIKNAERSDSGKYTLTLKNPAGEK-SATINVKV   74 (74)
T ss_pred             EECCEEcCCCCeEEEEECCCeEEEEECCCCcCcCEEEEEEEECCCccE-EEEEEEEC
Confidence            57888886555544443  24589999999999999999999999984 44566654

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-

>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1

Probab=99.33  E-value=4.4e-12  Score=74.29  Aligned_cols=53  Identities=25%  Similarity=0.306  Sum_probs=38.5

Q ss_pred             cCeEcCcCccceEEecC----CEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEE
Q psy7035           4 SNVQLYNNISAGVIVSN----QSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAY   56 (70)
Q Consensus         4 ng~~l~~~~~~~~~~~~----~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V   56 (70)
                      ||+++..+.++.....+    ++|+|.+++.+|+|.|+|.|+|..|...+.++.|.|
T Consensus        39 ~g~~l~~~~~r~~v~~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~~g~~~~s~~l~v   95 (96)
T cd05865          39 NGEKLTPNQQRISVVRNDDYSSTLTIYNANIDDAGIYKCVVSNEDEGESEATVNVKI   95 (96)
T ss_pred             CCcCccccCCeEEEEeCCCCceEEEEeccChhhCEEEEEEEEcCCCCcEEEEEEEEE
Confidence            67766553333322222    589999999999999999999998544555777776

Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans

>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2

Probab=99.33  E-value=4.6e-12  Score=73.83  Aligned_cols=53  Identities=17%  Similarity=0.267  Sum_probs=42.2

Q ss_pred             cCeEcCcCccceEEecCC---EEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEE
Q psy7035           4 SNVQLYNNISAGVIVSNQ---SLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYD   57 (70)
Q Consensus         4 ng~~l~~~~~~~~~~~~~---tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~   57 (70)
                      ||+++....+ ..+..++   +|+|.+++.+|+|.|+|.|+|..|.....++.|.|+
T Consensus        37 ~g~~~~~~~r-~~~~~~g~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~i~l~~~   92 (92)
T cd05866          37 QGEKIVSSQR-VVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIY   92 (92)
T ss_pred             CCeEecCCCC-EEEEeCCCeeEEEEecCChHHCEEEEEEEEcCCCcEEEEEEEEEEC
Confidence            5677755433 3334444   899999999999999999999999988888888873

Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.33  E-value=4.5e-12  Score=69.89  Aligned_cols=53  Identities=25%  Similarity=0.369  Sum_probs=41.0

Q ss_pred             cccCeEcCcCccceEEecCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEE
Q psy7035           2 SFSNVQLYNNISAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAY   56 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V   56 (70)
                      +|+|.++..+. ......+++|+|.+++.+|+|.|+|.|+|..|... ..+.|.|
T Consensus        18 ~k~~~~~~~~~-~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~-~~~~l~V   70 (71)
T cd05876          18 DRIDGPLSPNR-TKKLNNNKTLQLDNVLESDDGEYVCTAENSEGSAR-HHYTVTV   70 (71)
T ss_pred             EECCcCCCCCc-eeEEcCCCEEEEcccCHHhCEEEEEEEEcCCCeEE-EEEEEEE
Confidence            36676665432 33445778999999999999999999999999854 4677776

Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=99.32  E-value=6.4e-12  Score=70.24  Aligned_cols=41  Identities=29%  Similarity=0.420  Sum_probs=37.3

Q ss_pred             EEecCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEE
Q psy7035          16 VIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAY   56 (70)
Q Consensus        16 ~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V   56 (70)
                      ....+++|.|.+++++|+|.|+|.|+|..|...+..+.|+|
T Consensus        39 ~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~~~~l~~   79 (79)
T cd05734          39 QLLSNGSLLIKHVLEEDSGYYLCKVSNDVGADASKSMVLTV   79 (79)
T ss_pred             EEecCCeEEECcCCcccCEEEEEEEEeCCCCCCceEEEEeC
Confidence            34578999999999999999999999999999999998875

Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule)

Probab=99.32  E-value=6.3e-12  Score=70.26  Aligned_cols=55  Identities=15%  Similarity=0.129  Sum_probs=43.2

Q ss_pred             cccCeEcCcCcc-ceEEecCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEE
Q psy7035           2 SFSNVQLYNNIS-AGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYD   57 (70)
Q Consensus         2 ~~ng~~l~~~~~-~~~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~   57 (70)
                      +|||+++..... .....++++|.|.+++++|+|.|+|.|+|..|...+ .+.|.|+
T Consensus        21 ~k~g~~i~~~~~~~~~~~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~-~~~l~v~   76 (76)
T cd05868          21 LTNGVPIEIAPTDPSRKVDGDTIIFSKVQERSSAVYQCNASNEYGYLLA-NAFVNVL   76 (76)
T ss_pred             EECCEEccccCCCceEEecCCEEEECCCCHhhCEEEEEEEEcCCCEEEE-EEEEEeC
Confidence            578998864322 223456779999999999999999999999998755 6788773

Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein

Probab=99.32  E-value=7.7e-12  Score=71.87  Aligned_cols=54  Identities=22%  Similarity=0.179  Sum_probs=40.6

Q ss_pred             cccCeEcCcCccceEEecC---CEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEE
Q psy7035           2 SFSNVQLYNNISAGVIVSN---QSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAY   56 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~~~~---~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V   56 (70)
                      +|||+++...++..+...+   .+|+|.+++++|+|.|+|.|+|..|+... .+.|.|
T Consensus        36 ~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~-~~~v~v   92 (92)
T cd05737          36 LKNDQALALSDHYNVKVEQGKYASLTIKGVSSEDSGKYGIVVKNKYGGETV-DVTVSV   92 (92)
T ss_pred             EECCEECccCCCEEEEEcCCCEEEEEEccCChhhCEEEEEEEEECCCcceE-EEEEeC
Confidence            5788888765554444332   37999999999999999999999997644 455543

Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.

>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB

Probab=99.31  E-value=7e-12  Score=71.58  Aligned_cols=53  Identities=19%  Similarity=0.155  Sum_probs=39.2

Q ss_pred             cccCeEcCcCccceE--E-----ecCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEE
Q psy7035           2 SFSNVQLYNNISAGV--I-----VSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTA   55 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~--~-----~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~   55 (70)
                      +|||++|..+.+...  .     ...++|.|.+++++|+|.|+|.|+|..|++.. .+.++
T Consensus        18 ~kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~-~~~~~   77 (79)
T cd05855          18 FHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDEK-NVSAH   77 (79)
T ss_pred             EECCEECCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCcccce-EEEee
Confidence            689999976543221  1     12358999999999999999999999997543 44443

TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.

>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins

Probab=99.30  E-value=9.2e-12  Score=71.89  Aligned_cols=53  Identities=19%  Similarity=0.371  Sum_probs=39.8

Q ss_pred             cCeEcCcCccceEEecC---CEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEE
Q psy7035           4 SNVQLYNNISAGVIVSN---QSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAY   56 (70)
Q Consensus         4 ng~~l~~~~~~~~~~~~---~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V   56 (70)
                      ||+++....+..+...+   .+|+|.+++.+|+|.|+|.|+|..|...+.++.|+|
T Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~g~~~~~sv~l~~   92 (92)
T cd04977          37 NGEKLVTQQQISVVQNDDVRSTLTIYNANIEDAGIYKCVATDAKGTESEATVNLKI   92 (92)
T ss_pred             CCCEeccCCCEEEEeCCCCEEEEEEecCCcccCEEEEEEEEcCCCCcceeEEEEEC
Confidence            56666554443333222   389999999999999999999998877777787765

Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s

>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2)

Probab=99.30  E-value=5.1e-12  Score=70.32  Aligned_cols=51  Identities=18%  Similarity=0.149  Sum_probs=39.0

Q ss_pred             cccCeEcCcCccceEEecCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEE
Q psy7035           2 SFSNVQLYNNISAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAY   56 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V   56 (70)
                      +|||++|..+.+   ...+.+|.|.+++.+|+|.|+|.|.|..|.... ..++++
T Consensus        18 ~k~g~~l~~~~~---~~~~~~L~I~~v~~~D~G~YtC~a~N~~G~~~~-~~t~~l   68 (70)
T cd05864          18 YKNGQLIVLNHT---FKRGVHLTIYEVTEKDAGNYTVVLTNPITKEEQ-RHTFQL   68 (70)
T ss_pred             EECCEECCCCCE---EccCCEEEECcCCHHHCEEEEEEEEECCCceee-EEEEEE
Confidence            689999875432   234568999999999999999999999997644 334443

Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=99.30  E-value=1.3e-11  Score=70.95  Aligned_cols=55  Identities=11%  Similarity=0.174  Sum_probs=42.1

Q ss_pred             cccCeEcCcCccce-EEecCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEE
Q psy7035           2 SFSNVQLYNNISAG-VIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYD   57 (70)
Q Consensus         2 ~~ng~~l~~~~~~~-~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~   57 (70)
                      ++||+++.....+. +...+.+|+|.+++++|+|.|+|.|+|..|.. +..+.|.|.
T Consensus        38 ~k~g~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~-~~~~~L~V~   93 (95)
T cd05730          38 TKDGEPIESGEEKYSFNEDGSEMTILDVDKLDEAEYTCIAENKAGEQ-EAEIHLKVF   93 (95)
T ss_pred             EECCEECcCCCCEEEEeCCCCEEEECCCChhhCEEEEEEEEcCCCeE-EEEEEEEEE
Confidence            46788886542222 22344579999999999999999999999986 457888886

Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the

>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha

Probab=99.29  E-value=8.2e-12  Score=73.72  Aligned_cols=55  Identities=18%  Similarity=0.140  Sum_probs=42.2

Q ss_pred             cccCeEcCcCccceEEe--------cCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEE
Q psy7035           2 SFSNVQLYNNISAGVIV--------SNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYD   57 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~~--------~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~   57 (70)
                      +|||++|..+.+.....        ...+|+|.+++++|+|.|+|.|+|..|+. +.++.|.|+
T Consensus        38 ~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g~~-~~t~~l~V~  100 (101)
T cd05859          38 LKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDAVK-SYTFALQIQ  100 (101)
T ss_pred             EECCEECcCCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCceE-EEEEEEEEE
Confidence            68999997654332211        13589999999999999999999999985 446778775

IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.

>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3)

Probab=99.29  E-value=9.7e-12  Score=68.89  Aligned_cols=49  Identities=22%  Similarity=0.154  Sum_probs=38.3

Q ss_pred             cccCeEcCcCccceEEecCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEE
Q psy7035           2 SFSNVQLYNNISAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYD   57 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~   57 (70)
                      +|||++|...      ...++|.|.+++.+|+|.|+|.|+|..|.. +..+.|+|.
T Consensus        18 ~kdg~~l~~~------~~~~~L~i~~v~~~D~G~YtC~a~N~~g~~-~~~~~~~l~   66 (67)
T cd05863          18 YKDGKLISGK------HSQHSLQIKDVTEASAGTYTLVLWNSAAGL-EKRISLELI   66 (67)
T ss_pred             EECCEECccc------CCcCEEEECCCCHHHCEEEEEEEEECCccE-EEEEEEEEE
Confidence            5888888632      145799999999999999999999999974 335566553

Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.

>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1

Probab=99.28  E-value=1.1e-11  Score=71.05  Aligned_cols=53  Identities=15%  Similarity=0.214  Sum_probs=40.8

Q ss_pred             cccCeEcCcCccceEEecCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEE
Q psy7035           2 SFSNVQLYNNISAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYD   57 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~   57 (70)
                      +|+|.++....  .+...+++|.|.+++++|+|.|+|.|.|..|.... .+.|.|+
T Consensus        36 ~k~~~~~~~~~--~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~-~~~l~V~   88 (88)
T cd05851          36 RKILEPMPATA--EISMSGAVLKIFNIQPEDEGTYECEAENIKGKDKH-QARVYVQ   88 (88)
T ss_pred             EECCcCCCCCC--EEecCCCEEEECcCChhhCEEEEEEEEcCCCceEE-EEEEEEC
Confidence            45666665432  34456789999999999999999999999998644 6777763

Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.28  E-value=1.1e-11  Score=67.85  Aligned_cols=51  Identities=24%  Similarity=0.270  Sum_probs=39.7

Q ss_pred             cccCeEcCcCccceEEecCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEE
Q psy7035           2 SFSNVQLYNNISAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKT   54 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L   54 (70)
                      +|||.++....+ ..+..+++|.|.+++.+|+|.|+|.|.|..|.... .+.|
T Consensus        18 ~k~g~~~~~~~~-~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~-~~~L   68 (69)
T cd05746          18 NKDGVQVTESGK-FHISPEGYLAIRDVGVADQGRYECVARNTIGYASV-SMVL   68 (69)
T ss_pred             EECCEECCCCCC-EEECCCCEEEECcCChhhCEEEEEEEECCCCcEEE-EEEe
Confidence            478888765433 33446789999999999999999999999998643 4544

Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.

>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1

Probab=99.28  E-value=1.6e-11  Score=71.38  Aligned_cols=53  Identities=23%  Similarity=0.268  Sum_probs=42.5

Q ss_pred             cccCeEcCcCccceEEecCCEEEEcccC-CCCCeeeEEEeEeCCCcccceeEEEE
Q psy7035           2 SFSNVQLYNNISAGVIVSNQSLVLQNVS-RARAGHYTCVGSNGEGDGQSNAQKTA   55 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~~~~~tL~i~~v~-~~D~G~Y~C~a~N~~G~~~s~~~~L~   55 (70)
                      +|||+++.....+ ..+.+++|.|.++. ++|+|.|+|.|+|..|...|..++|.
T Consensus        39 ~k~~~~i~~~~~~-~~~~~g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s~~a~l~   92 (93)
T cd05849          39 RKNNLDIDLTNDR-YSMVGGNLVINNPDKYKDAGRYVCIVSNIYGKVRSREATLS   92 (93)
T ss_pred             EECCEEccCCCCe-EEEECCEEEECcCCcCCCCEEEEEEEEeCcceEEEccEEEe
Confidence            5778887543333 34568999999985 59999999999999999999888875

Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=99.27  E-value=1.4e-11  Score=70.92  Aligned_cols=55  Identities=24%  Similarity=0.306  Sum_probs=44.9

Q ss_pred             cccCeEcCcCcc-ceEEecCCEEEEccc-----CCCCCeeeEEEeEeC-CCcccceeEEEEE
Q psy7035           2 SFSNVQLYNNIS-AGVIVSNQSLVLQNV-----SRARAGHYTCVGSNG-EGDGQSNAQKTAY   56 (70)
Q Consensus         2 ~~ng~~l~~~~~-~~~~~~~~tL~i~~v-----~~~D~G~Y~C~a~N~-~G~~~s~~~~L~V   56 (70)
                      +|||.++..+.. +..+..+++|.|.++     +++|+|.|+|.|.|. .|...|.+++|.|
T Consensus        34 ~k~g~~l~~~~~~~~~~~~~~~l~i~~v~~~~~~~~D~G~Y~C~a~N~~~G~~~s~~~~l~v   95 (95)
T cd05722          34 KKDGVLLNLVSDERRQQLPNGSLLITSVVHSKHNKPDEGFYQCVAQNDSLGSIVSRTARLTV   95 (95)
T ss_pred             EECCeECccccCcceEEccCCeEEEeeeeccCCCCCcCEEEEEEEECCccCcEEEeeeEEeC
Confidence            578888864432 344567889999887     689999999999999 9999999999876

Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.27  E-value=1.5e-11  Score=68.05  Aligned_cols=39  Identities=18%  Similarity=0.297  Sum_probs=33.7

Q ss_pred             ecCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEE
Q psy7035          18 VSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYD   57 (70)
Q Consensus        18 ~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~   57 (70)
                      ..+++|.|.+++.+|+|.|+|.|.|..|.. +..+.|.|+
T Consensus        37 ~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~-~~~~~l~V~   75 (75)
T cd05763          37 PEDDVFFIVDVKIEDTGVYSCTAQNTAGSI-SANATLTVL   75 (75)
T ss_pred             cCCCEEEEeeCCcccCEEEEEEEEcCCCEE-EeeEEEEEC
Confidence            356799999999999999999999999985 556888873

Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.27  E-value=1e-11  Score=67.71  Aligned_cols=52  Identities=23%  Similarity=0.351  Sum_probs=38.6

Q ss_pred             cccCeEcCcCccceEEecCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEE
Q psy7035           2 SFSNVQLYNNISAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAY   56 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V   56 (70)
                      +|++..+...  +.....+++|+|.+++++|+|.|+|.|+|..|...+ .+.|.|
T Consensus        18 ~k~~~~~~~~--~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~-~~~l~V   69 (69)
T cd05725          18 RKEDGELPKG--RAEILDDKSLKIRNVTAGDEGSYTCEAENMVGKIEA-SASLTV   69 (69)
T ss_pred             EECCccCCCC--cEEEeeCCEEEECcCChhHCEEEEEEEEcCCCcEEE-EEEEEC
Confidence            3555555332  233447789999999999999999999999998644 566654

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

Probab=99.27  E-value=1.9e-11  Score=69.49  Aligned_cols=55  Identities=24%  Similarity=0.333  Sum_probs=41.8

Q ss_pred             cccCeEcCc----CccceEEecCCEEEEccc-----CCCCCeeeEEEeEeCCCcccceeEEEEE
Q psy7035           2 SFSNVQLYN----NISAGVIVSNQSLVLQNV-----SRARAGHYTCVGSNGEGDGQSNAQKTAY   56 (70)
Q Consensus         2 ~~ng~~l~~----~~~~~~~~~~~tL~i~~v-----~~~D~G~Y~C~a~N~~G~~~s~~~~L~V   56 (70)
                      +|||+++..    ...+...+.++.+.+..+     +++|+|.|+|.|+|..|...|..+.|.|
T Consensus        36 ~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~D~G~Y~C~a~N~~G~~~s~~~~l~v   99 (100)
T cd07693          36 LKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGRSDEGVYVCVAHNSLGEAVSRNASLEV   99 (100)
T ss_pred             EECCEECccccCCCCcceEEecCCcEEEEEeeccCCCcCcCEEEEEEEEccccceecceEEEEe
Confidence            578888865    223344556666554443     7899999999999999998899999987

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res

>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=99.26  E-value=1.9e-11  Score=68.40  Aligned_cols=53  Identities=21%  Similarity=0.299  Sum_probs=41.0

Q ss_pred             cccCeEcCcCc--cceEEecCCEEEEcccCC----CCCeeeEEEeEeCCCcccceeEEE
Q psy7035           2 SFSNVQLYNNI--SAGVIVSNQSLVLQNVSR----ARAGHYTCVGSNGEGDGQSNAQKT   54 (70)
Q Consensus         2 ~~ng~~l~~~~--~~~~~~~~~tL~i~~v~~----~D~G~Y~C~a~N~~G~~~s~~~~L   54 (70)
                      +|||.++....  +..+...+++|+|.+++.    +|+|.|+|.|+|..|...|..++|
T Consensus        18 ~k~g~~l~~~~~~~~~~~~~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~~~l   76 (77)
T cd05733          18 TRNGTHFDPEKDPRVTMKPDSGTLVIDNMNGGRAEDYEGEYQCYASNELGTAISNEIHL   76 (77)
T ss_pred             EECCeECCCCCCCCEEEeCCCCEEEEeccCCCCCcCCCEEEEEEEEcCCCcEEccccEE
Confidence            57888885432  222334578999999864    799999999999999999988776

Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.

>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule)

Probab=99.26  E-value=2.4e-11  Score=68.30  Aligned_cols=53  Identities=19%  Similarity=0.260  Sum_probs=40.6

Q ss_pred             cccCeEcCcCcc--ceEEecCCEEEEcccCC----CCCeeeEEEeEeCCCcccceeEEE
Q psy7035           2 SFSNVQLYNNIS--AGVIVSNQSLVLQNVSR----ARAGHYTCVGSNGEGDGQSNAQKT   54 (70)
Q Consensus         2 ~~ng~~l~~~~~--~~~~~~~~tL~i~~v~~----~D~G~Y~C~a~N~~G~~~s~~~~L   54 (70)
                      +|||.++.....  ..+...+++|+|..++.    .|+|.|+|.|+|..|...|..++|
T Consensus        18 ~k~g~~l~~~~~~~~~~~~~~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~~~~   76 (77)
T cd05874          18 TRNGTHFDIDKDPKVTMKPNTGTLVINIMNGEKAEAYEGVYQCTARNERGAAVSNNIVI   76 (77)
T ss_pred             EECCeECCCcCCCCEEEeCCCceEEEeccccCCCCCCCEEEEEEEEcCCCeEEeeEEEE
Confidence            578888743322  22334689999999874    488999999999999999988776

Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd04967 Ig1_Contactin First Ig domain of contactin

Probab=99.26  E-value=1.2e-11  Score=70.87  Aligned_cols=51  Identities=24%  Similarity=0.349  Sum_probs=40.2

Q ss_pred             cccCeEcCcCccceEEecCCEEEEcccCC-CCCeeeEEEeEeCCCcccceeE
Q psy7035           2 SFSNVQLYNNISAGVIVSNQSLVLQNVSR-ARAGHYTCVGSNGEGDGQSNAQ   52 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~~~~~tL~i~~v~~-~D~G~Y~C~a~N~~G~~~s~~~   52 (70)
                      +|||+++...........+++|.|.++.+ +|+|.|+|.|+|..|...|.++
T Consensus        39 ~k~~~~l~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~N~~G~~~S~~~   90 (91)
T cd04967          39 LMNGTEIDDEPDSRYSLVGGNLVISNPSKAKDAGRYQCLASNIVGTVLSREA   90 (91)
T ss_pred             EECCEECCCCCCCCEEEECCEEEEecCCccCCCEEEEEEEEcCCCEEEeccc
Confidence            57888885333334456788999999875 9999999999999999888754

Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata

>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.26  E-value=3.1e-11  Score=68.98  Aligned_cols=43  Identities=21%  Similarity=0.237  Sum_probs=36.8

Q ss_pred             EEecCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeC
Q psy7035          16 VIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIG   59 (70)
Q Consensus        16 ~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~   59 (70)
                      .+..+++|+|.+++++|+|.|+|.|.|..|...+ .+.|.|...
T Consensus        42 ~v~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~-~~~l~V~~~   84 (90)
T cd05726          42 SVSQTGDLTITNVQRSDVGYYICQTLNVAGSILT-KAYLEVTDV   84 (90)
T ss_pred             EECCCCeEEEeeCChhhCEEEEEEEEcCCCceEE-EEEEEEeec
Confidence            3345789999999999999999999999998654 689999844

Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor

Probab=99.26  E-value=2e-11  Score=68.49  Aligned_cols=54  Identities=20%  Similarity=0.232  Sum_probs=40.9

Q ss_pred             cccCeEcCcCccc---eEEecCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEE
Q psy7035           2 SFSNVQLYNNISA---GVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAY   56 (70)
Q Consensus         2 ~~ng~~l~~~~~~---~~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V   56 (70)
                      +|||.++..+.+.   .......+|.|.+++.+|+|.|+|.|.|..|+... .+.|+|
T Consensus        29 ~k~g~~l~~~~~~~~~~~~~~~~~l~i~~~~~~D~G~Y~C~a~N~~G~~~~-~~~l~v   85 (85)
T cd05857          29 LKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINH-TYHLDV   85 (85)
T ss_pred             EECCEECCCCCceeeeEEeCCceEEEEccCCcccCEEEEEEEEeCCCEEEE-EEEEEC
Confidence            5788888754432   12234568999999999999999999999998544 677765

Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.

>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF)

Probab=99.26  E-value=2.7e-11  Score=68.05  Aligned_cols=53  Identities=17%  Similarity=0.211  Sum_probs=40.8

Q ss_pred             cccCeEcC--cCccceEEecCCEEEEcccCC----CCCeeeEEEeEeCCCcccceeEEE
Q psy7035           2 SFSNVQLY--NNISAGVIVSNQSLVLQNVSR----ARAGHYTCVGSNGEGDGQSNAQKT   54 (70)
Q Consensus         2 ~~ng~~l~--~~~~~~~~~~~~tL~i~~v~~----~D~G~Y~C~a~N~~G~~~s~~~~L   54 (70)
                      +|||.++.  .+.+..+...+++|.|.+++.    .|+|.|+|.|+|..|...|..++|
T Consensus        18 ~k~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~~~~   76 (77)
T cd05875          18 TRNGKFFNVAKDPRVSMRRRSGTLVIDFSGGGRPEDYEGEYQCFARNNLGTALSNKILL   76 (77)
T ss_pred             EECCEEccCcCCCcEEEeCCCceEEEeccCCCCCCCCCEEEEEEEEeccceEEEEEEEE
Confidence            57888764  333333334788999998753    579999999999999999988876

Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.

>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C)

Probab=99.25  E-value=2.4e-11  Score=69.55  Aligned_cols=54  Identities=19%  Similarity=0.174  Sum_probs=39.6

Q ss_pred             cccCeEcCcCc-cceEEe--cCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEE
Q psy7035           2 SFSNVQLYNNI-SAGVIV--SNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAY   56 (70)
Q Consensus         2 ~~ng~~l~~~~-~~~~~~--~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V   56 (70)
                      +|||+++...+ +..+..  ..++|.|.+++++|+|.|+|.|+|..|+. +..+.|.|
T Consensus        30 ~k~~~~i~~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~-~~~~~l~V   86 (86)
T cd05894          30 SRGDKAFTETEGRVRVESYKDLSSFVIEGAEREDEGVYTITVTNPVGED-HASLFVKV   86 (86)
T ss_pred             EECCEECccCCCeEEEEEcCCeEEEEECCCccCcCEEEEEEEEeCCCcE-EEEEEEEC
Confidence            57888886533 332222  23589999999999999999999999985 34566654

Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.

>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=99.25  E-value=2.1e-11  Score=68.49  Aligned_cols=44  Identities=23%  Similarity=0.398  Sum_probs=36.7

Q ss_pred             cccCeEcCcCccceEEecCCEEEEcccCCCCCeeeEEEeEeCCCcc
Q psy7035           2 SFSNVQLYNNISAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDG   47 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~   47 (70)
                      +|||.+|..+.+  +.+.+++|.|.+++.+|+|.|+|.|.|..|..
T Consensus        28 ~k~g~~l~~~~~--~~~~~~~L~I~~~~~~DsG~Y~C~a~n~~g~~   71 (79)
T cd04973          28 TKDGVQLGENNR--TRITGEEVQIKDAVPRDSGLYACVTSSPSGSD   71 (79)
T ss_pred             eeCCcCCCCCce--EEEeCCEEEECCCChhhCEEEEEEEeCCCCcc
Confidence            688988876543  33467899999999999999999999999874

Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.

>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.24  E-value=2.2e-11  Score=66.96  Aligned_cols=51  Identities=20%  Similarity=0.363  Sum_probs=39.5

Q ss_pred             cCeEcCcCccceEEecCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEE
Q psy7035           4 SNVQLYNNISAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAY   56 (70)
Q Consensus         4 ng~~l~~~~~~~~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V   56 (70)
                      |++.+... .+.....+++|.|.+++++|+|.|+|.|+|..|.. +..+.|.|
T Consensus        24 ~~~~~~~~-~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~-~~~~~l~v   74 (74)
T cd05764          24 DGKLISNS-SRTLVYDNGTLDILITTVKDTGSFTCIASNAAGEA-TATVELHI   74 (74)
T ss_pred             CCEEecCC-CeEEEecCCEEEEEECChhhCEEEEEEEECCCCeE-EEEEEEEC
Confidence            56666543 33455678999999999999999999999999975 44566654

Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=99.24  E-value=2.4e-11  Score=69.00  Aligned_cols=52  Identities=21%  Similarity=0.275  Sum_probs=41.5

Q ss_pred             cccCeEcCcCccceEEecCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEE
Q psy7035           2 SFSNVQLYNNISAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAY   56 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V   56 (70)
                      +|||+++..+.+  +...+++|.|.+++.+|+|.|+|.|.|..|...+ .+.|.|
T Consensus        34 ~k~g~~~~~~~~--~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~-~~~l~V   85 (85)
T cd05728          34 LKNGQPLASENR--IEVEAGDLRITKLSLSDSGMYQCVAENKHGTIYA-SAELAV   85 (85)
T ss_pred             EECCEECCCCCe--EEEeCCEEEEeeCCHHHCEEEEEEEECCCCeEEE-EEEEEC
Confidence            578888865443  3457889999999999999999999999998543 566654

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2

Probab=99.23  E-value=2.4e-11  Score=67.89  Aligned_cols=50  Identities=16%  Similarity=0.250  Sum_probs=38.1

Q ss_pred             cccCeEcCcCccceEEec--CCEEEEcccCCCCCeeeEEEeEeCCCccccee
Q psy7035           2 SFSNVQLYNNISAGVIVS--NQSLVLQNVSRARAGHYTCVGSNGEGDGQSNA   51 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~~~--~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~   51 (70)
                      ++|+.++..+.+..+...  .++|+|.+++++|+|.|+|.|.|..|...+.+
T Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~   72 (78)
T cd05743          21 RLNWGHVPDSARVSITSEGGYGTLTIRDVKESDQGAYTCEAINTRGMVFGIP   72 (78)
T ss_pred             EECCeECCCCCCEEEEECCCEEEEEECCCChHHCEEEEEEEEecCCEEEecc
Confidence            467777765544333333  35899999999999999999999999877654

Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.

>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1)

Probab=99.23  E-value=2.4e-11  Score=68.19  Aligned_cols=54  Identities=19%  Similarity=0.060  Sum_probs=41.1

Q ss_pred             cccCeEcCcCccceEEecCCEEEEcccCCCCCeeeEEEeEeC-CCcccceeEEEEE
Q psy7035           2 SFSNVQLYNNISAGVIVSNQSLVLQNVSRARAGHYTCVGSNG-EGDGQSNAQKTAY   56 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~~~~~tL~i~~v~~~D~G~Y~C~a~N~-~G~~~s~~~~L~V   56 (70)
                      +|||+++..+.. ....++++|.|.+++.+|+|.|+|.|+|. .|......++|.|
T Consensus        18 ~kdg~~l~~~~~-~~~~~~~~L~I~~v~~~D~G~YtC~a~~~~~~~~~~~~i~~~~   72 (72)
T cd07702          18 LKDGLPAAEKCS-RYHVDGYSLVIKDVTEEDAGIYTILLGIKQYNLFKNLTITLIV   72 (72)
T ss_pred             EECCEECCCCCc-EEEeCCCEEEECcCCHHHCEEEEEEEEccccceEeeEEEEEEC
Confidence            588998875432 33456779999999999999999999997 5565565666543

Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.23  E-value=3.1e-11  Score=65.51  Aligned_cols=53  Identities=23%  Similarity=0.288  Sum_probs=39.4

Q ss_pred             cccCeEcCcCccceEEecCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEE
Q psy7035           2 SFSNVQLYNNISAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAY   56 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V   56 (70)
                      ++++.++..+ +......+++|.|.+++.+|+|.|+|.|.|..|.. +..+.|.|
T Consensus        18 ~k~~~~~~~~-~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~-~~~~~l~V   70 (71)
T cd05731          18 IKIGGELPAD-RTKFENFNKTLKIDNVSEEDDGEYRCTASNSLGSA-RHTISVTV   70 (71)
T ss_pred             EECCeECCCC-ceeEecCCCEEEECCCCHHHCEEEEEEEEeCCceE-EEEEEEEE
Confidence            3566666433 22233456799999999999999999999999975 44677776

Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.

>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin

Probab=99.22  E-value=6e-11  Score=70.57  Aligned_cols=59  Identities=22%  Similarity=0.156  Sum_probs=43.9

Q ss_pred             cccCeEcCc-CccceEE------ecCCEEEEcccC-CCCCeeeEEEeEeCCCcccceeEEEEEEeCCC
Q psy7035           2 SFSNVQLYN-NISAGVI------VSNQSLVLQNVS-RARAGHYTCVGSNGEGDGQSNAQKTAYDIGLG   61 (70)
Q Consensus         2 ~~ng~~l~~-~~~~~~~------~~~~tL~i~~v~-~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~p~   61 (70)
                      ++||.+|.. +.+....      ..+++|+|.+++ ++|.|.|+|.|.|..|.. +..+.|.|...|+
T Consensus        43 ~k~g~~l~~~~~r~~~~~~~~~~~~~s~L~I~~v~~~~D~G~Y~C~A~N~~G~~-~~~i~L~~~~~p~  109 (109)
T cd05773          43 AKNGVPLDLGNPRYEETTEHTGTVHTSILTIINVSAALDYALFTCTAHNSLGED-SLDIQLVSTSRPD  109 (109)
T ss_pred             EECCEECCCCCCeEEEEeeccCccceeEEEECcCCccCCCEEEEEEEEeCCccC-cEEEEEEecCCCC
Confidence            578888864 3322211      113689999998 599999999999999996 5578999986664

Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p

>cd04968 Ig3_Contactin_like Third Ig domain of contactin

Probab=99.21  E-value=5e-11  Score=67.68  Aligned_cols=52  Identities=15%  Similarity=0.250  Sum_probs=39.2

Q ss_pred             ccCeEcCcCccceEEecCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEE
Q psy7035           3 FSNVQLYNNISAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYD   57 (70)
Q Consensus         3 ~ng~~l~~~~~~~~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~   57 (70)
                      |+|..+.....  ....+++|.|.+++.+|+|.|+|.|.|..|.... .+.|.|+
T Consensus        37 k~~~~~~~~~~--~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~-~~~l~V~   88 (88)
T cd04968          37 KVDGSMPSSAE--ISMSGAVLKIPNIQFEDEGTYECEAENIKGKDTH-QGRIYVQ   88 (88)
T ss_pred             ECCCcCCCccE--EEEeCCEEEECCCCcccCEEEEEEEEECCCcEEE-EEEEEEC
Confidence            45555443322  2357889999999999999999999999998644 6777763

Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins

Probab=99.20  E-value=1.3e-10  Score=64.28  Aligned_cols=55  Identities=20%  Similarity=0.358  Sum_probs=41.8

Q ss_pred             cccCeEcCcCccc-eEEecC-CEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEE
Q psy7035           2 SFSNVQLYNNISA-GVIVSN-QSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYD   57 (70)
Q Consensus         2 ~~ng~~l~~~~~~-~~~~~~-~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~   57 (70)
                      +|||+.+....+. .....+ .+|.|.+++.+|.|.|+|.|.|..|..+. .+.|.|.
T Consensus        18 ~k~~~~l~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~-~~~l~V~   74 (76)
T cd05736          18 LKNGMDITPKLSKQLTLIANGSELHISNVRYEDTGAYTCIAKNEAGVDED-ISSLFVE   74 (76)
T ss_pred             EECCEECCCCCCccEEEeCCCCEEEECcCCcccCEEEEEEEEcCCCCcce-EEEEEEE
Confidence            4788887643322 223344 47999999999999999999999998754 7888885

Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.

>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1)

Probab=99.20  E-value=2.7e-11  Score=67.00  Aligned_cols=54  Identities=24%  Similarity=0.233  Sum_probs=38.2

Q ss_pred             cccCeEcCcCccceEEecCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEE
Q psy7035           2 SFSNVQLYNNISAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAY   56 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V   56 (70)
                      ++||.++.............+|.|.+++.+|+|.|+|.|+|..|.. +..+.|+|
T Consensus        29 ~k~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~-~~~~~v~v   82 (82)
T cd05856          29 LKDNKPLTPTEIGESRKKKWTLSLKNLKPEDSGKYTCHVSNRAGEI-NATYKVDV   82 (82)
T ss_pred             EECCcCCcCCccceecCceEEEEEccCChhhCEEEEEEEEcCCccE-EEEEEEeC
Confidence            4667666543322222334689999999999999999999999974 44555553

Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.

>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=99.19  E-value=9.7e-11  Score=68.21  Aligned_cols=45  Identities=27%  Similarity=0.307  Sum_probs=36.8

Q ss_pred             cccCeEcCcCccceEEecCCEEEEcccCCCCCeeeEEEeEeCCCccc
Q psy7035           2 SFSNVQLYNNISAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQ   48 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~   48 (70)
                      +|||+++..+..+ + ..+++|.|.+++.+|+|.|+|.|.|..|...
T Consensus        35 yk~~~~i~~~~~~-~-~~~~~L~I~~v~~~DsG~YtC~~~n~~~~~~   79 (92)
T cd05757          35 YKDCKLLEGDRKR-F-VKGSKLLIQNVTEEDAGNYTCKLTFTHNGKQ   79 (92)
T ss_pred             eECCEECCCCccE-E-ecCCEEEEeeCChhhCEEEEEEEEecCCCEE
Confidence            5899998755433 2 3888999999999999999999999977643

Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1

>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=99.16  E-value=7.6e-11  Score=68.72  Aligned_cols=54  Identities=15%  Similarity=0.030  Sum_probs=39.4

Q ss_pred             cccCeEcCc--CccceEEecCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEE
Q psy7035           2 SFSNVQLYN--NISAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAY   56 (70)
Q Consensus         2 ~~ng~~l~~--~~~~~~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V   56 (70)
                      +|+|.++..  .....+...+++|.|.+++.+|+|.|+|.++|..|.... .+.|+|
T Consensus        39 yk~~~~~~~~~~~~~r~~~~~~~L~I~~~~~~DsG~Y~C~~~N~~g~~~~-~~~L~v   94 (94)
T cd05756          39 YKSDGKTPIPTEERSRMHQQKDLLWFLPAALEDSGLYTCVVRNSTYCMKV-SISLTV   94 (94)
T ss_pred             EEcCCCCcccccccceeeecCCeEEEccCCcccCeEEEEEEcCCCccEEE-EEEEEC
Confidence            567765432  112223346789999999999999999999999998655 566664

Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2)

Probab=99.15  E-value=1.8e-10  Score=66.49  Aligned_cols=47  Identities=17%  Similarity=0.179  Sum_probs=36.1

Q ss_pred             cccCeEcCcCccceEEecCC---EEEEcccCCCCCeeeEEEeEeCCCccc
Q psy7035           2 SFSNVQLYNNISAGVIVSNQ---SLVLQNVSRARAGHYTCVGSNGEGDGQ   48 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~~~~~---tL~i~~v~~~D~G~Y~C~a~N~~G~~~   48 (70)
                      +|+|.++..+.+..+....+   +|.|.+++.+|+|.|+|.|+|..|...
T Consensus        36 ~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~   85 (92)
T cd05891          36 FKNDQDIELSEHYSVKLEQGKYASLTIKGVTSEDSGKYSINVKNKYGGET   85 (92)
T ss_pred             EECCEECCCCCCEEEEEcCCCEEEEEECCCChhhCEEEEEEEEeCCCcee
Confidence            57788776554444433332   899999999999999999999999753

Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.

>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=99.13  E-value=1.9e-10  Score=64.72  Aligned_cols=54  Identities=28%  Similarity=0.418  Sum_probs=42.1

Q ss_pred             cccCeEcCcCccceEEe--cCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEE
Q psy7035           2 SFSNVQLYNNISAGVIV--SNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAY   56 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~~--~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V   56 (70)
                      ++||.++..+.+..+..  ...+|.|.+++++|+|.|+|.|+|..|.... .+.|.|
T Consensus        35 ~~~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~g~~~~-~~~l~V   90 (90)
T PF07679_consen   35 YKNGRPLTSSQRYQIESDGGSSSLTIKNVTREDAGTYTCVASNSSGEATA-SVNLTV   90 (90)
T ss_dssp             EETTEEEESSSSEEEEEETTEEEEEESSESGGGSEEEEEEEEETTEEEEE-EEEEEE
T ss_pred             cccccceeeeeeeeeecccceeEEccCCCChhhCEEEEEEEEECCCEEEE-EEEEEC
Confidence            57888888766555544  3458999999999999999999999887543 566665

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....

>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2)

Probab=99.13  E-value=1.8e-10  Score=65.87  Aligned_cols=35  Identities=31%  Similarity=0.472  Sum_probs=31.2

Q ss_pred             CEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEE
Q psy7035          21 QSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAY   56 (70)
Q Consensus        21 ~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V   56 (70)
                      ++|+|.+++.+|+|.|+|.|.|..|...+ .+.|.|
T Consensus        55 ~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~-~a~L~V   89 (90)
T cd05858          55 EVLYLRNVTFEDAGEYTCLAGNSIGISHH-SAWLTV   89 (90)
T ss_pred             eEEEEccCCHHHCEEEEEEEEeCCCcccc-eEEEEE
Confidence            47999999999999999999999998644 678887

Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.

>KOG3513|consensus

Probab=99.12  E-value=1e-10  Score=90.50  Aligned_cols=63  Identities=25%  Similarity=0.348  Sum_probs=50.5

Q ss_pred             ccCeEcCcCccceEEecCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeCCCCCCCC
Q psy7035           3 FSNVQLYNNISAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGLGIPAEP   66 (70)
Q Consensus         3 ~ng~~l~~~~~~~~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~p~~~~~p   66 (70)
                      ++|..+...+++..++.+|+|.|.+++++|+|.|+|.|+|..|.+.+ .+.|.|+..+.+.-+|
T Consensus       461 ~k~~~~~~~~~r~~i~edGtL~I~n~t~~DaG~YtC~A~N~~G~a~~-~~~L~Vkd~tri~~~P  523 (1051)
T KOG3513|consen  461 LKGGEKLLQSGRIRILEDGTLEISNVTRSDAGKYTCVAENKLGKAES-TGNLIVKDATRITLAP  523 (1051)
T ss_pred             EcCCcccccCceEEECCCCcEEecccCcccCcEEEEEEEcccCccce-EEEEEEecCceEEecc
Confidence            34434555566788889999999999999999999999999999876 6899999666543333

>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=99.12  E-value=9.7e-11  Score=67.19  Aligned_cols=37  Identities=32%  Similarity=0.451  Sum_probs=32.6

Q ss_pred             CCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEE
Q psy7035          20 NQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYD   57 (70)
Q Consensus        20 ~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~   57 (70)
                      .++|.|.+|+.+|+|.|+|.|+|..|.... ++.|.|+
T Consensus        54 ~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~-sa~L~V~   90 (90)
T cd04974          54 SEVLYLRNVSFDDAGEYTCLAGNSIGPSHH-SAWLTVL   90 (90)
T ss_pred             cceEEEeccccccCcEEEEEeecccCcccC-CEEEEeC
Confidence            358999999999999999999999998644 7888874

Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.

>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=99.10  E-value=2.1e-10  Score=65.53  Aligned_cols=54  Identities=15%  Similarity=0.233  Sum_probs=39.2

Q ss_pred             cccCeEcCcCccceE--EecCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEE
Q psy7035           2 SFSNVQLYNNISAGV--IVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAY   56 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~--~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V   56 (70)
                      ++||.++..+.....  .....+|.|.+++.+|.|.|+|.|+|..|+... .+.|.|
T Consensus        35 ~~~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~g~Y~C~A~N~~G~~~~-~~~L~v   90 (90)
T cd04972          35 IIAGLIVIQTRTDTLETTVDIYNLQLSNITSETQTTVTCTAENPVGQANV-SVQVTV   90 (90)
T ss_pred             EECCEEccCCccEEEEecCCEEEEEEecCCcccCEEEEEEEECCCCceeE-EEEEeC
Confidence            567877754432211  123458999999999999999999999998644 566654

TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo

>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs)

Probab=99.09  E-value=2e-10  Score=62.89  Aligned_cols=48  Identities=23%  Similarity=0.314  Sum_probs=36.1

Q ss_pred             cccCeEcCcCccce-EEe----cCCEEEEcccCCCCCeeeEEEeEeCCCcccc
Q psy7035           2 SFSNVQLYNNISAG-VIV----SNQSLVLQNVSRARAGHYTCVGSNGEGDGQS   49 (70)
Q Consensus         2 ~~ng~~l~~~~~~~-~~~----~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s   49 (70)
                      +|||+++....+.. ..+    ..++|+|.+++.+|+|.|+|.|+|..|....
T Consensus        19 ~k~g~~l~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~   71 (75)
T cd05750          19 FKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVENILGNDTV   71 (75)
T ss_pred             EcCCeeccccCCcceEEEEecCceEEEEEccCCcccCeEEEEEEEEcCCceeE
Confidence            57888886543322 112    3468999999999999999999999997543

Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv

>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins

Probab=99.09  E-value=4.6e-10  Score=64.33  Aligned_cols=46  Identities=17%  Similarity=0.267  Sum_probs=36.2

Q ss_pred             cccCeEcCcCccceEEec--CCEEEEcccCCCCCeeeEEEeEeCCCcc
Q psy7035           2 SFSNVQLYNNISAGVIVS--NQSLVLQNVSRARAGHYTCVGSNGEGDG   47 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~~~--~~tL~i~~v~~~D~G~Y~C~a~N~~G~~   47 (70)
                      +|||.++..+.+..+...  .++|.|.+++.+|+|.|+|.|+|..|..
T Consensus        38 ~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~   85 (92)
T cd05747          38 MREGQIIVSSQRHQITSTEYKSTFEISKVQMSDEGNYTVVVENSEGKQ   85 (92)
T ss_pred             EECCEECCCCCcEEEEEcCCeeEEEECCCCcccCEeEEEEEEcCCCCE
Confidence            478888766554444322  3589999999999999999999999974

Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.

>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=99.08  E-value=4.7e-10  Score=64.93  Aligned_cols=35  Identities=31%  Similarity=0.463  Sum_probs=30.5

Q ss_pred             CEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEE
Q psy7035          21 QSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAY   56 (70)
Q Consensus        21 ~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V   56 (70)
                      ++|+|.+++.+|+|.|+|.|+|..|.. +..+.|.|
T Consensus        63 ~~L~I~~v~~~D~G~Y~C~A~N~~G~~-~~~~~l~v   97 (97)
T cd05869          63 SSLTLKYIQYTDAGEYLCTASNTIGQD-SQSMYLEV   97 (97)
T ss_pred             EEEEEecCccCcCEEEEEEEecCCCCe-eEEEEEEC
Confidence            589999999999999999999999986 44677765

Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr

>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1

Probab=99.03  E-value=4.6e-10  Score=62.13  Aligned_cols=47  Identities=17%  Similarity=0.268  Sum_probs=34.5

Q ss_pred             cccCeEcCcCc--cceEEe----cCCEEEEcccCCCCCeeeEEEeEeCCCccc
Q psy7035           2 SFSNVQLYNNI--SAGVIV----SNQSLVLQNVSRARAGHYTCVGSNGEGDGQ   48 (70)
Q Consensus         2 ~~ng~~l~~~~--~~~~~~----~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~   48 (70)
                      +|||+++....  +..+..    ..++|.|.+++.+|+|.|+|.|+|..|...
T Consensus        19 ~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~   71 (76)
T cd05895          19 FKNGKEIGAKNKPDNKIKIRKKKKSSELQISKASLADNGEYKCMVSSKLGNDS   71 (76)
T ss_pred             EECCcccccCCCCCceEEEEeCCcEEEEEECcCCcccCEEEEEEEEeCCCcee
Confidence            57888885321  111111    236899999999999999999999999653

Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process

>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2)

Probab=99.03  E-value=1.2e-09  Score=64.40  Aligned_cols=45  Identities=20%  Similarity=0.129  Sum_probs=35.6

Q ss_pred             cccCeEcCcCccceEEe-cCCEEEEcccCCCCCeeeEEEeEeCCCc
Q psy7035           2 SFSNVQLYNNISAGVIV-SNQSLVLQNVSRARAGHYTCVGSNGEGD   46 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~~-~~~tL~i~~v~~~D~G~Y~C~a~N~~G~   46 (70)
                      |||+++|..+.++...+ ....|.|.+|+.+|+|.|+|.|.|..|.
T Consensus        35 YKd~~~l~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~~~~~~~g   80 (95)
T cd05897          35 YKDSVLLDKDNEKFYSLKGSTYLHIIDVSLNDSGYYTCKLQFTHEG   80 (95)
T ss_pred             ccCCEECcCCCcceEecCCCCEEEEEEcChhhCEEEEEEEEEeeCC
Confidence            68999987655443333 3468999999999999999999998654

Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.02  E-value=6.5e-10  Score=61.60  Aligned_cols=38  Identities=26%  Similarity=0.327  Sum_probs=32.2

Q ss_pred             ecCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEE
Q psy7035          18 VSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAY   56 (70)
Q Consensus        18 ~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V   56 (70)
                      ...++|+|.+++.+|+|.|+|.|.|..|+... .+.|.|
T Consensus        44 ~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~-~~~l~v   81 (81)
T cd05765          44 TNIGQLVIYNAQPQDAGLYTCTARNSGGLLRA-NFPLSV   81 (81)
T ss_pred             ccccEEEEccCCcccCEEEEEEEecCCceEEE-EEEEeC
Confidence            35579999999999999999999999998544 677765

Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin

Probab=99.01  E-value=1.1e-09  Score=62.25  Aligned_cols=56  Identities=21%  Similarity=0.246  Sum_probs=42.2

Q ss_pred             cccCeEcCcCc--cceEEecCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEE
Q psy7035           2 SFSNVQLYNNI--SAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYD   57 (70)
Q Consensus         2 ~~ng~~l~~~~--~~~~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~   57 (70)
                      +|||..+....  ...+....+.|.|.+++.+|+|.|.|.|.|..+...+.++.|.|.
T Consensus        30 ~k~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~~~~~~~~~~~~~l~V~   87 (89)
T cd04979          30 LFQGGPLQRKEEPEERLLVTEDGLLIRSVSPADAGVYTCQSVEHGFKQTLATYSLNVL   87 (89)
T ss_pred             EECCcccccccCcCceEEEcCCCEEEccCCHHHCEEEEEEEecCccceeEeEEEEEEe
Confidence            46676665432  223444566799999999999999999999887777777888875

Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.

>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM)

Probab=99.01  E-value=5.5e-10  Score=64.73  Aligned_cols=36  Identities=22%  Similarity=0.398  Sum_probs=31.1

Q ss_pred             CCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEE
Q psy7035          20 NQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAY   56 (70)
Q Consensus        20 ~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V   56 (70)
                      +++|+|.+++.+|+|.|+|.|+|..|... ..+.|+|
T Consensus        63 ~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~-~~~~l~~   98 (98)
T cd05870          63 ESSLHIKDVKLSDSGRYDCEAASRIGGHQ-KSMYLDI   98 (98)
T ss_pred             eeEEEEeeCCcCCCEEEEEEEeccCCcce-eEEEEeC
Confidence            35899999999999999999999999754 4677765

Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=99.00  E-value=4.3e-10  Score=66.46  Aligned_cols=46  Identities=17%  Similarity=0.214  Sum_probs=35.1

Q ss_pred             cccCeEc--CcCccceEEecCCEEEEcccCCCCCeeeEEEeEeCCCcc
Q psy7035           2 SFSNVQL--YNNISAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDG   47 (70)
Q Consensus         2 ~~ng~~l--~~~~~~~~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~   47 (70)
                      ++|+.++  ..+.++.+...+|.|.|.+|+++|+|.|+|.|+|.++..
T Consensus        39 ~k~~~~~~~~~d~r~~~~~~~G~L~fs~v~~~D~g~Y~C~A~n~~~~~   86 (96)
T cd05727          39 LLNEFPNFIPEDGRRFVSQTNGNLYIAKVEASDRGNYSCFVSSPSSTK   86 (96)
T ss_pred             EECCcccccccCCCeEEeCCCCcEEEeecCHhhCceeEEEEEecccCC
Confidence            4566554  345555555568999999999999999999999986644

Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=99.00  E-value=5.5e-10  Score=63.53  Aligned_cols=38  Identities=26%  Similarity=0.402  Sum_probs=35.1

Q ss_pred             cCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEE
Q psy7035          19 SNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAY   56 (70)
Q Consensus        19 ~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V   56 (70)
                      .+.+|.|.+++.+|+|.|+|.|.|..|+..|+++.|+|
T Consensus        46 ~~~~l~I~~~~~~dsG~Y~C~~~~~~~~~~s~~~~i~~   83 (83)
T cd05753          46 SNSNLSIPQATLSDSGSYHCSGIIGSYDYSSEPVSITV   83 (83)
T ss_pred             CCceEEECccCHHHCEEEEEEEEeCCceecCCCEEEEC
Confidence            35689999999999999999999999999999999876

Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=98.99  E-value=5.6e-10  Score=63.12  Aligned_cols=34  Identities=15%  Similarity=0.320  Sum_probs=30.2

Q ss_pred             cCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEE
Q psy7035          19 SNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAY   56 (70)
Q Consensus        19 ~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V   56 (70)
                      ++++|+|.++ ++|+|.|+|.|.|.   ..|.+++|+|
T Consensus        45 ~~~~l~i~~~-~~dsG~Y~C~a~~~---~~S~~v~l~V   78 (78)
T cd05752          45 TTNSYRIRAA-NNDSGEYRCQTQGS---SLSDPVHLEV   78 (78)
T ss_pred             cCCeEEEeec-ccCCEEeEEECCCC---cCCCCEEEeC
Confidence            5679999999 99999999999985   6788898876

Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>KOG4222|consensus

Probab=98.99  E-value=6.7e-10  Score=86.48  Aligned_cols=65  Identities=20%  Similarity=0.312  Sum_probs=54.7

Q ss_pred             cccCeEcCc-CccceEEecCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeCCCCCCCC
Q psy7035           2 SFSNVQLYN-NISAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGLGIPAEP   66 (70)
Q Consensus         2 ~~ng~~l~~-~~~~~~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~p~~~~~p   66 (70)
                      +|||.++.. +.....++++|.|.|+||+++|+|.|+|+|.|.+|+.+|.+++|.|+..|..--+|
T Consensus       167 ~Kdg~pl~~~~~~~~~lisgG~LlIsnvrksD~GtY~CVatNmvG~ReS~~A~lsv~e~P~f~~rp  232 (1281)
T KOG4222|consen  167 VKDGKPLDHYDVPIIALISGGNLLISNVRKSDEGTYACVATNMVGERESIPARLSVQEKPWFWKRP  232 (1281)
T ss_pred             ecCCCccccccceeEEEecCCcEEEeccccCCCceeeeeecccccccccccceeeeccCCcccccc
Confidence            578888873 33344567999999999999999999999999999999999999999888654444

>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins

Probab=98.98  E-value=1e-09  Score=62.72  Aligned_cols=35  Identities=31%  Similarity=0.467  Sum_probs=30.7

Q ss_pred             CEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEE
Q psy7035          21 QSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAY   56 (70)
Q Consensus        21 ~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V   56 (70)
                      ++|+|.+++.+|+|.|+|.|+|..|.. +.++.|.|
T Consensus        62 ~~L~I~~v~~~D~G~Y~C~a~N~~G~~-~~s~~l~v   96 (96)
T cd05732          62 SSLTLKDVQLTDAGRYDCEASNRIGGD-QQSMYLEV   96 (96)
T ss_pred             EEEEECcCCcCcCEEeEEEEEeCCCCc-EEEEEEeC
Confidence            489999999999999999999999986 55677764

Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole

>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D

Probab=98.94  E-value=1.4e-09  Score=63.14  Aligned_cols=42  Identities=24%  Similarity=0.427  Sum_probs=34.8

Q ss_pred             cccCeEcCcCccceEEecCCEEEEcccCCCCCeeeEEEeEeCC
Q psy7035           2 SFSNVQLYNNISAGVIVSNQSLVLQNVSRARAGHYTCVGSNGE   44 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~   44 (70)
                      +|||++|..+..+ ..+.++.|+|.+++++|+|.|+|.|.+..
T Consensus        30 ~~ng~~i~~~~~r-~~~~~~~L~I~nv~~~DsG~Y~C~a~e~~   71 (87)
T cd05873          30 KFDGKVLTPESAK-YLLYRDGLLIFNASEADAGRYQCLSVEKS   71 (87)
T ss_pred             EECCEECCCCCce-EEEECCcEEEeCCCHHHCEEEEEEEEecc
Confidence            5899999765433 34577899999999999999999999974

Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas

>KOG3513|consensus

Probab=98.93  E-value=3.1e-09  Score=82.39  Aligned_cols=64  Identities=17%  Similarity=0.246  Sum_probs=51.1

Q ss_pred             cccCeEcCcCc-cceEEecCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeC-CCCCCCC
Q psy7035           2 SFSNVQLYNNI-SAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIG-LGIPAEP   66 (70)
Q Consensus         2 ~~ng~~l~~~~-~~~~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~-p~~~~~p   66 (70)
                      +|||.+|...+ .....+.+|+|+|.+|+.+|+|.|+|.|+|..|...+ .+.|.|+.- |..+-.|
T Consensus       366 lkNg~pl~~~~r~~~~~i~~g~L~is~v~~~dsg~YQC~A~Nk~G~i~a-nA~L~V~a~~P~f~~~p  431 (1051)
T KOG3513|consen  366 LKNGEPLEPAERDPRYKIDDGTLIISNVQESDSGVYQCIAENKYGTIYA-NAELKVLASAPVFPLNP  431 (1051)
T ss_pred             eeCCeecCccCCCcceEEeCCEEEEEecccccCeEEEeeeecccceEee-eeEEEEEccCCCCCCCc
Confidence            68999997433 3346678999999999999999999999999998755 688999864 5444333

>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs)

Probab=98.91  E-value=2.2e-09  Score=61.20  Aligned_cols=48  Identities=15%  Similarity=0.184  Sum_probs=36.9

Q ss_pred             cccCeEcCcCccceEEecCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEE
Q psy7035           2 SFSNVQLYNNISAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTA   55 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~   55 (70)
                      +|||+++....    ....++|.|.++.  |+|.|+|.|+|..|...|..++|+
T Consensus        34 ~k~g~~l~~~~----~~~~s~L~i~~~~--d~g~Y~C~A~N~~G~~~s~~a~~~   81 (81)
T cd05749          34 WQGGSPLGDPP----APSPSVLNVPGLN--ETSKFSCEAHNAKGVTTSRTGTVT   81 (81)
T ss_pred             EECCEECCCCC----CCCCCEEEEcccc--CCeEEEEEEEeccCcEEeeeEEeC
Confidence            57888875311    1245789999984  789999999999999988887763

Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c

>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=98.91  E-value=4.1e-09  Score=58.07  Aligned_cols=48  Identities=21%  Similarity=0.275  Sum_probs=34.6

Q ss_pred             cccCeEcCcCccceEEecCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEE
Q psy7035           2 SFSNVQLYNNISAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKT   54 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L   54 (70)
                      +|||+++....+  ....+..|.|.+++  |+|.|+|.|.|..|.... ++.|
T Consensus        21 ~k~g~~l~~~~~--~~~~~~~L~i~~~~--d~G~Y~C~A~N~~G~~~~-~a~l   68 (69)
T cd05739          21 MKGGEELTKEDE--MPVGRNVLELTNIY--ESANYTCVAISSLGMIEA-TAQV   68 (69)
T ss_pred             EECCEECCCccc--eecCccEEEEeccc--cCeeEEEEEEeCCCEEEE-EEEE
Confidence            477888755432  23355689999984  899999999999997544 4444

Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).

>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=98.89  E-value=5e-09  Score=62.51  Aligned_cols=44  Identities=23%  Similarity=0.237  Sum_probs=35.8

Q ss_pred             cceEEecCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEE
Q psy7035          13 SAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAY   56 (70)
Q Consensus        13 ~~~~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V   56 (70)
                      .+..+..||+|.|++++++|+|.|+|.+.|.....+...+.|.|
T Consensus        62 gR~~~~~ngSL~I~~v~~~D~G~Y~~~v~~~~~~~~~~~v~l~V  105 (105)
T cd05774          62 GRETIYPNGSLLIQNVTQKDTGFYTLQTITTNFQVEQATVHLQV  105 (105)
T ss_pred             CcEEEeCCCcEEEecCCcccCEEEEEEEEeCCccEEEEEEEEEC
Confidence            45667789999999999999999999999987665555565553

IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D

>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins

Probab=98.89  E-value=4.8e-09  Score=60.73  Aligned_cols=52  Identities=15%  Similarity=0.289  Sum_probs=36.2

Q ss_pred             cccCeEcCcCc-cceEEecC-------CEEEEcccCCC-CCeeeEEEeEeCCCcccceeEEE
Q psy7035           2 SFSNVQLYNNI-SAGVIVSN-------QSLVLQNVSRA-RAGHYTCVGSNGEGDGQSNAQKT   54 (70)
Q Consensus         2 ~~ng~~l~~~~-~~~~~~~~-------~tL~i~~v~~~-D~G~Y~C~a~N~~G~~~s~~~~L   54 (70)
                      ++||+++...+ .+..+..+       ++|+|.++.++ |.|.|+|.|.|..|.+.. .+.|
T Consensus        37 ~~~~~~i~~~~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~Y~C~A~N~~G~~~~-~~~L   97 (98)
T cd05758          37 TWKENELESGSSGRYTVETDPSPGGVLSTLTISNTQESDFQTSYNCTAWNSFGSGTA-IISL   97 (98)
T ss_pred             EECCEEccCCCCCCEEEEEecCCCceEEEEEECCccccccceeEEEEEEcCCCcccE-EEEe
Confidence            36777775432 23333222       38999999994 499999999999998654 4554

Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins

Probab=98.83  E-value=4.9e-09  Score=59.03  Aligned_cols=36  Identities=28%  Similarity=0.522  Sum_probs=30.3

Q ss_pred             CCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEE
Q psy7035          20 NQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAY   56 (70)
Q Consensus        20 ~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V   56 (70)
                      ..+|+|.+++.+|+|.|+|.|+|..|.... +..|.|
T Consensus        48 ~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~~-s~~v~v   83 (84)
T cd05742          48 SSTLTIPNATLKDSGTYTCAASSGTMDQKE-STKVNI   83 (84)
T ss_pred             EEEEEECCCChhhCEEEEEEEccCCCceEE-EEEEEE
Confidence            358999999999999999999999987543 566665

Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF

>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

Probab=98.83  E-value=1.9e-08  Score=55.59  Aligned_cols=54  Identities=20%  Similarity=0.274  Sum_probs=37.3

Q ss_pred             cccCeEcCcCccceEE---ecCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEE
Q psy7035           2 SFSNVQLYNNISAGVI---VSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAY   56 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~---~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V   56 (70)
                      +++|..+..+......   ....+|.|.+++.+|+|.|+|.|.|..|.. +.++.|+|
T Consensus        29 ~k~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~~-~~~~~l~v   85 (85)
T cd05729          29 LKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGKYTCIVENKYGSI-NHTYKVDV   85 (85)
T ss_pred             EECCEECcccCceeEEEccCcEEEEEEeECCcccCEEEEEEEEECCceE-EEEEEEeC
Confidence            4667666543322211   122479999999999999999999999984 44666654

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin

>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b)

Probab=98.83  E-value=1.2e-08  Score=57.92  Aligned_cols=38  Identities=11%  Similarity=0.276  Sum_probs=32.2

Q ss_pred             CCEEEEcccCCCCCeeeEEEeEeCCC-cccceeEEEEEE
Q psy7035          20 NQSLVLQNVSRARAGHYTCVGSNGEG-DGQSNAQKTAYD   57 (70)
Q Consensus        20 ~~tL~i~~v~~~D~G~Y~C~a~N~~G-~~~s~~~~L~V~   57 (70)
                      ..+|+|.+++.+|+|.|+|.|+|..+ ...+.++.|+|.
T Consensus        45 ~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~sv~i~V~   83 (84)
T cd05861          45 RSTLTFPHATVEDSGTYECAAHESTQDQKAFKKVNITVH   83 (84)
T ss_pred             EEEEEECCCCcCCCEEEEEEEEECccCcceeEEEEEEEe
Confidence            35899999999999999999999865 455778888885

Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.

>smart00408 IGc2 Immunoglobulin C-2 Type

Probab=98.79  E-value=2e-08  Score=51.47  Aligned_cols=41  Identities=32%  Similarity=0.459  Sum_probs=31.0

Q ss_pred             ccCeEcCcCccceEEecCCEEEEcccCCCCCeeeEEEeEeCCC
Q psy7035           3 FSNVQLYNNISAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEG   45 (70)
Q Consensus         3 ~ng~~l~~~~~~~~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G   45 (70)
                      ++|..+.  ........+.+|.|.+++..|+|.|+|.+.|..|
T Consensus        23 ~~~~~~~--~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g   63 (63)
T smart00408       23 KDGKPLP--ESNRLSASGSTLTIKSVSLEDSGEYTCVAENSAG   63 (63)
T ss_pred             ECCEECC--CCCEEecCCcEEEEeeCCcccCEEEEEEEecCCC
Confidence            4565555  2223334567999999999999999999999765

>PHA02826 IL-1 receptor-like protein; Provisional

Probab=98.78  E-value=2.2e-08  Score=66.59  Aligned_cols=43  Identities=16%  Similarity=0.187  Sum_probs=35.1

Q ss_pred             cccCeEcCcCccceEEecCCEEEEcccCCCCCeeeEEEeEeCC
Q psy7035           2 SFSNVQLYNNISAGVIVSNQSLVLQNVSRARAGHYTCVGSNGE   44 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~   44 (70)
                      +|||++|..+.+..+...+++|+|.+|+++|+|.|+|.|+...
T Consensus       169 yKng~~l~~~~r~~~~~~~~~L~I~~V~~~DsG~YtC~a~~~~  211 (227)
T PHA02826        169 YKNGNIVLYTDRIQLRNNNSTLVIKSATHDDSGIYTCNLRFNK  211 (227)
T ss_pred             EECCEECCCCCCEEEeCCCCEEEECcCCHHhCEEEEEEEEEeE
Confidence            5899999766554444456799999999999999999999863

>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R)

Probab=98.72  E-value=2.5e-08  Score=56.99  Aligned_cols=37  Identities=27%  Similarity=0.488  Sum_probs=31.0

Q ss_pred             CCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEE
Q psy7035          20 NQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYD   57 (70)
Q Consensus        20 ~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~   57 (70)
                      ..+|.|.+++.+|+|.|+|.|+|..|... ....|.|+
T Consensus        49 ~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~-~~t~~~V~   85 (86)
T cd05862          49 SSTLTIENVTLSDLGRYTCTASSGQMIAK-NSTIVIVH   85 (86)
T ss_pred             eeEEEEecCCcccCEEEEEEEeecceEec-ccEEEEEe
Confidence            35899999999999999999999988543 35677775

IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge

>smart00410 IG_like Immunoglobulin like

Probab=98.72  E-value=8.1e-08  Score=51.48  Aligned_cols=51  Identities=25%  Similarity=0.374  Sum_probs=37.3

Q ss_pred             CeEcCcCccceEEecC--CEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEE
Q psy7035           5 NVQLYNNISAGVIVSN--QSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAY   56 (70)
Q Consensus         5 g~~l~~~~~~~~~~~~--~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V   56 (70)
                      ++++..+.+......+  .+|.|.+++..|+|.|+|.+.|..+..... +.|.|
T Consensus        33 ~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~-~~l~V   85 (86)
T smart00410       33 GKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASST-TTLTV   85 (86)
T ss_pred             CEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEE-EEEEE
Confidence            5666533333333333  689999999999999999999988876555 77776

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.

>smart00409 IG Immunoglobulin

Probab=98.72  E-value=8.1e-08  Score=51.48  Aligned_cols=51  Identities=25%  Similarity=0.374  Sum_probs=37.3

Q ss_pred             CeEcCcCccceEEecC--CEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEE
Q psy7035           5 NVQLYNNISAGVIVSN--QSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAY   56 (70)
Q Consensus         5 g~~l~~~~~~~~~~~~--~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V   56 (70)
                      ++++..+.+......+  .+|.|.+++..|+|.|+|.+.|..+..... +.|.|
T Consensus        33 ~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~-~~l~V   85 (86)
T smart00409       33 GKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASST-TTLTV   85 (86)
T ss_pred             CEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEE-EEEEE
Confidence            5666533333333333  689999999999999999999988876555 77776

>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=98.69  E-value=6.5e-08  Score=56.52  Aligned_cols=34  Identities=18%  Similarity=0.223  Sum_probs=27.1

Q ss_pred             CEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEE
Q psy7035          21 QSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAY   56 (70)
Q Consensus        21 ~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V   56 (70)
                      .+|.|++|+.+|+|.|+|.|..  +...+..++|.|
T Consensus        62 ~~L~I~nV~~~D~G~YtC~~~t--~~~~~~~~~~~v   95 (95)
T cd05882          62 LIISISNVQLSDEGEYTCSIFT--MPVRTAKATVTV   95 (95)
T ss_pred             EEEEECCCCcccCEEEEEEEEe--eccccEEEEEEC
Confidence            5899999999999999999998  334455566654

Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format

>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins

Probab=98.69  E-value=2.9e-08  Score=55.85  Aligned_cols=31  Identities=35%  Similarity=0.536  Sum_probs=28.2

Q ss_pred             cCCEEEEcccCCCCCeeeEEEeEeCCCcccc
Q psy7035          19 SNQSLVLQNVSRARAGHYTCVGSNGEGDGQS   49 (70)
Q Consensus        19 ~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s   49 (70)
                      .+++|.|.+++.+|+|.|+|.|.|..|....
T Consensus        50 ~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~~~   80 (85)
T cd05754          50 FNGILTIRNVQLSDAGTYVCTGSNMLDTDEA   80 (85)
T ss_pred             cCCEEEECCCCHHHCEEEEEEEeccCCeEeE
Confidence            4689999999999999999999999997655

Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.

>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins

Probab=98.67  E-value=6.9e-08  Score=54.57  Aligned_cols=40  Identities=25%  Similarity=0.283  Sum_probs=34.1

Q ss_pred             EecCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEE
Q psy7035          17 IVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAY   56 (70)
Q Consensus        17 ~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V   56 (70)
                      ...+++|.|.+++.+|+|.|+|......|......+.|.|
T Consensus        53 ~~~~~sL~I~~l~~~DsG~Y~c~v~~~~~~~~~~~~~l~v   92 (92)
T cd05741          53 IYPNGSLLIQNLTKEDSGTYTLQIISTNGVTENAKFFLRV   92 (92)
T ss_pred             EcCCceEEEccCCchhcEEEEEEEEcCCCcEEEEEEEEEC
Confidence            3467899999999999999999999988877777777654

Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf

>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin

Probab=98.66  E-value=7.9e-08  Score=55.61  Aligned_cols=40  Identities=23%  Similarity=0.355  Sum_probs=32.6

Q ss_pred             EecCCEEEEcccCCCCCeeeEEEeEe-CCCcccceeEEEEEE
Q psy7035          17 IVSNQSLVLQNVSRARAGHYTCVGSN-GEGDGQSNAQKTAYD   57 (70)
Q Consensus        17 ~~~~~tL~i~~v~~~D~G~Y~C~a~N-~~G~~~s~~~~L~V~   57 (70)
                      ...+++|.|.+++++|+|.|+|.|.| ..+.... .++|.|.
T Consensus        49 ~~~~~~L~I~~~~~~DsG~Y~C~a~~~~~~~~~~-~~~l~v~   89 (91)
T cd05871          49 IHTERGLLLRSLQRSDAGVYTCTAVEHSFSQTLA-KYTLHVI   89 (91)
T ss_pred             EEecCeEEEeeCChhHCEEEEEEEEccCCeEEEE-EEEEEEe
Confidence            44668899999999999999999985 6665444 7888886

Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula

>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=98.59  E-value=1.3e-07  Score=54.94  Aligned_cols=34  Identities=21%  Similarity=0.255  Sum_probs=27.9

Q ss_pred             CEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEE
Q psy7035          21 QSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAY   56 (70)
Q Consensus        21 ~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V   56 (70)
                      .+|.|.+++.+|+|.|+|.+.+..+  .+..+.|.|
T Consensus        62 ~sL~I~~v~~~DsG~Y~C~~~t~~~--~~~~~~l~v   95 (95)
T cd07701          62 LSISISDVSLSDEGQYTCSLFTMPV--KTSKAYLTV   95 (95)
T ss_pred             EEEEECcCCcccCEEEEEEeEeecC--ccEEEEEEC
Confidence            5899999999999999999998533  355677765

Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.

>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like

Probab=98.58  E-value=1.1e-07  Score=55.31  Aligned_cols=38  Identities=18%  Similarity=0.164  Sum_probs=34.3

Q ss_pred             CCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEE
Q psy7035          20 NQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYD   57 (70)
Q Consensus        20 ~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~   57 (70)
                      +.+|+|.+++.+|+|.|.|...+..|......+.|.|+
T Consensus        60 ~~sL~I~~~~~~DsG~Y~c~v~~~~~~~~~~~f~L~vy   97 (97)
T cd05775          60 DYSLQISNLKMEDAGSYRAEINTKNGVTITKEFTLHIY   97 (97)
T ss_pred             ceeEEECCCchHHCEEEEEEEEcCCCCeEEEEEEEEeC
Confidence            47999999999999999999999889888888888874

Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region

>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain

Probab=98.57  E-value=8.4e-08  Score=58.58  Aligned_cols=40  Identities=18%  Similarity=0.221  Sum_probs=34.8

Q ss_pred             EEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeCCCC
Q psy7035          22 SLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGLGI   62 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~p~~   62 (70)
                      +|+|.+++.+|+|.|.|.+.|..|.. +..++|.|..+|.+
T Consensus         2 sL~i~~v~~~D~G~Y~C~~~~~~~~~-~~~~~l~v~~~P~v   41 (139)
T cd05771           2 SLTLPGLTVHDEGTYICSVSTPPHQA-QQIIQLSVSEPPRV   41 (139)
T ss_pred             eEEECCCCHHHCEEEEEEEEccCcce-eeEEEEEEecCCce
Confidence            79999999999999999999987774 56789999977754

IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.

>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1)

Probab=98.56  E-value=1.8e-07  Score=56.18  Aligned_cols=32  Identities=22%  Similarity=0.262  Sum_probs=27.9

Q ss_pred             eEEecCCEEEEcccCCCCCeeeEEEeEeCCCc
Q psy7035          15 GVIVSNQSLVLQNVSRARAGHYTCVGSNGEGD   46 (70)
Q Consensus        15 ~~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~   46 (70)
                      .+...+..|.|.++..+|+|.|+|.++|.-..
T Consensus        64 Ri~~~~~~Lwf~Pa~~eDSG~Y~C~~rN~t~C   95 (104)
T cd05896          64 RMSKEEDSIWFRPAELQDSGLYTCVLRNSTYC   95 (104)
T ss_pred             eEEEeCCEEEEEeCChhhCeEEEEEECCCCcc
Confidence            44567889999999999999999999998654

Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of

>KOG4221|consensus

Probab=98.55  E-value=1.9e-07  Score=73.63  Aligned_cols=65  Identities=18%  Similarity=0.260  Sum_probs=51.9

Q ss_pred             cccCeEcCcCccceEEecCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeCCCCCCCCc
Q psy7035           2 SFSNVQLYNNISAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGLGIPAEPL   67 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~p~~~~~p~   67 (70)
                      ++||..|..++.+..+...++|.|.+++..|+|.|+|.|.|..-.. ...+.|+|+..|..+..|.
T Consensus       272 lrng~~i~~ds~rivl~g~~slliS~a~~~dSg~YtC~Atn~~D~i-dasaev~V~a~P~~~~~p~  336 (1381)
T KOG4221|consen  272 LRNGEKISVDSYRIVLVGGSSLLISNATDDDSGKYTCRATNTNDSI-DASAEVTVLAPPGFTKAPT  336 (1381)
T ss_pred             eeCCeeeeecceEEEEecccceEEeccccccCceEEEEecCCCccc-ccceEEEEEcCCCCCCCCc
Confidence            4788999877755666678899999999999999999999943332 3367899998888777663

>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A

Probab=98.53  E-value=1.2e-07  Score=51.48  Aligned_cols=35  Identities=37%  Similarity=0.642  Sum_probs=31.2

Q ss_pred             EEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEE
Q psy7035          22 SLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAY   56 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V   56 (70)
                      .|.|.+++.+|+|.|+|.|.|..+...|.++.|.|
T Consensus        46 ~~~~~~~~~~~~g~y~C~~~~~~~~~~s~~~~v~V   80 (80)
T PF13895_consen   46 GLFIPNVSPEDSGNYTCRASNGSGSNTSTSVNVTV   80 (80)
T ss_dssp             EEEESSEEGGGTEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             eeeeeeeccccCEEEEEEEEeCCCCeEeeeEEeeC
Confidence            38889999999999999999988888888888876

...

>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins

Probab=98.52  E-value=3.1e-07  Score=54.22  Aligned_cols=38  Identities=13%  Similarity=0.270  Sum_probs=32.3

Q ss_pred             cCCEEEEcccCCCCCeeeEEEeEe-CCCcccceeEEEEEE
Q psy7035          19 SNQSLVLQNVSRARAGHYTCVGSN-GEGDGQSNAQKTAYD   57 (70)
Q Consensus        19 ~~~tL~i~~v~~~D~G~Y~C~a~N-~~G~~~s~~~~L~V~   57 (70)
                      .+.+|+|.+++.+|.|.|.|...| +.|. .+..+.|.|+
T Consensus        61 ~daSi~i~nl~~~D~G~Y~C~v~t~P~g~-~~~~~~L~V~   99 (99)
T cd05886          61 EDGTISLSRLELEDEGVYICEFATFPTGN-RESQLNLTVY   99 (99)
T ss_pred             CcceEEEcCCccccCEEEEEEEEeCCCCC-eEEEEEEEEC
Confidence            458999999999999999999999 5775 5667888874

Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is

>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins

Probab=98.51  E-value=6.2e-07  Score=52.40  Aligned_cols=36  Identities=22%  Similarity=0.379  Sum_probs=30.2

Q ss_pred             CCEEEEcccCCCCCeeeEEEeEe-CCCcccceeEEEEE
Q psy7035          20 NQSLVLQNVSRARAGHYTCVGSN-GEGDGQSNAQKTAY   56 (70)
Q Consensus        20 ~~tL~i~~v~~~D~G~Y~C~a~N-~~G~~~s~~~~L~V   56 (70)
                      +.+|+|.+++.+|+|.|.|...+ +.|. ....+.|.|
T Consensus        63 ~~sL~I~nv~~sD~GtY~C~v~~~p~g~-~~~~~~L~V   99 (100)
T cd05888          63 DGALILRNAVQADEGKYKCRVITFPAGN-FEAELVLTV   99 (100)
T ss_pred             ceEEEEecCccccceEEEEEEEeCCCCC-eeeEEEEEe
Confidence            56899999999999999999999 5665 355677776

Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult

>PHA02826 IL-1 receptor-like protein; Provisional

Probab=98.50  E-value=1.9e-07  Score=62.11  Aligned_cols=37  Identities=24%  Similarity=0.394  Sum_probs=31.6

Q ss_pred             CCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEE
Q psy7035          20 NQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYD   57 (70)
Q Consensus        20 ~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~   57 (70)
                      +++|+|.+++++|+|.|+|.|+|..|.. ...+.|.|.
T Consensus        97 ~~~L~I~~v~~~DsG~Y~C~a~N~~~~~-~~~i~L~V~  133 (227)
T PHA02826         97 SENLWIGNVINIDEGIYICTISSGNICE-ESTIRLTFD  133 (227)
T ss_pred             CCeEEECCCChHHCEEEEEEEEECCcce-EEEEEEEEe
Confidence            5799999999999999999999988764 446778875

>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=98.50  E-value=1.5e-07  Score=55.45  Aligned_cols=35  Identities=17%  Similarity=0.131  Sum_probs=28.9

Q ss_pred             ccceEEecCCEEEEcccCCCCCe-eeEEEeEeCCCc
Q psy7035          12 ISAGVIVSNQSLVLQNVSRARAG-HYTCVGSNGEGD   46 (70)
Q Consensus        12 ~~~~~~~~~~tL~i~~v~~~D~G-~Y~C~a~N~~G~   46 (70)
                      +++..+..+|+|.|.+|+++|+| .|+|.|+|....
T Consensus        49 ~~Ri~~~~~GnL~fs~v~~~D~g~~Y~C~a~~~~~~   84 (95)
T cd05845          49 DERVSMGQNGNLYFANVEEQDSHPDYICHAHFPGLR   84 (95)
T ss_pred             cccEEECCCceEEEEEEehhhCCCCeEEEEEccccc
Confidence            34555556799999999999999 899999998643

Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>PHA02785 IL-beta-binding protein; Provisional

Probab=98.49  E-value=4.7e-07  Score=62.59  Aligned_cols=41  Identities=24%  Similarity=0.283  Sum_probs=32.7

Q ss_pred             EecCCEEEEcccCCCCCeeeEEEeEeCCCcccc---eeEEEEEE
Q psy7035          17 IVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQS---NAQKTAYD   57 (70)
Q Consensus        17 ~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s---~~~~L~V~   57 (70)
                      ...+++|.|.+|+++|+|.|+|.|+|..|....   ..+.|.|.
T Consensus       173 ~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~~~~~t~~v~l~V~  216 (326)
T PHA02785        173 QRTPGIITIEDVRKNDAGYYTCVLKYIYGDKTYNVTRIVKLEVR  216 (326)
T ss_pred             ecCCCeEEEeecChhhCeEEEEEEEeccCCEEEeEEEEEEEEEe
Confidence            345789999999999999999999999886532   34566665

>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG)

Probab=98.49  E-value=2.7e-07  Score=53.16  Aligned_cols=35  Identities=20%  Similarity=0.246  Sum_probs=29.4

Q ss_pred             CEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEE
Q psy7035          21 QSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAY   56 (70)
Q Consensus        21 ~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V   56 (70)
                      -+|.|.+++.+|+|.|.|.+.|..+. ....+.|.|
T Consensus        65 ~sL~I~~v~~~D~G~Y~C~v~~~~~~-~~~~i~l~v   99 (100)
T cd05713          65 VALRIHNVRASDEGLYTCFFQSDGFY-EEATVELKV   99 (100)
T ss_pred             EEEEEEcCChhhCEEEEEEEecCCcE-EEEEEEEEE
Confidence            48999999999999999999997665 555666765

Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).

>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins

Probab=98.47  E-value=1.8e-07  Score=53.66  Aligned_cols=38  Identities=18%  Similarity=0.375  Sum_probs=31.7

Q ss_pred             cCCEEEEcccCCCCCeeeEEEeEeC-C-CcccceeEEEEE
Q psy7035          19 SNQSLVLQNVSRARAGHYTCVGSNG-E-GDGQSNAQKTAY   56 (70)
Q Consensus        19 ~~~tL~i~~v~~~D~G~Y~C~a~N~-~-G~~~s~~~~L~V   56 (70)
                      ..+.+.|.+|+++|+|.|+|...|. . -+..|+++.|.|
T Consensus        51 ~~~~f~i~~v~~~~~G~Y~C~~~~~~~~~S~~Sd~lel~V   90 (91)
T cd05751          51 NKAKFFIPSMKREHAGRYRCYYRSGVALWSEPSDPLELVV   90 (91)
T ss_pred             eeEEEEccCCChhHCEEEEEEEECCCCccCCCCCcEEEEe
Confidence            3467999999999999999999996 2 356788888877

Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),

>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs

Probab=98.44  E-value=2e-07  Score=49.43  Aligned_cols=18  Identities=44%  Similarity=0.811  Sum_probs=17.5

Q ss_pred             EEEcccCCCCCeeeEEEe
Q psy7035          23 LVLQNVSRARAGHYTCVG   40 (70)
Q Consensus        23 L~i~~v~~~D~G~Y~C~a   40 (70)
                      |.|.+++++|+|.|+|.|
T Consensus        47 L~i~~v~~~d~G~Y~C~v   64 (64)
T PF00047_consen   47 LTISNVTPEDSGTYTCVV   64 (64)
T ss_dssp             EEESSCTGGGTEEEEEEE
T ss_pred             EEEccCCHHHCEEEEEEC
Confidence            999999999999999986

; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....

>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4))

Probab=98.42  E-value=5.7e-07  Score=51.52  Aligned_cols=54  Identities=11%  Similarity=0.061  Sum_probs=37.1

Q ss_pred             cccCeEcCcCccc----eEEecCCEEEEcccCCCCCeeeEEEeEeCCCcccc--eeEEEE
Q psy7035           2 SFSNVQLYNNISA----GVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQS--NAQKTA   55 (70)
Q Consensus         2 ~~ng~~l~~~~~~----~~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s--~~~~L~   55 (70)
                      |+||++|......    ...-..++|.|...+.+|.+.|+|+|.|.++....  ....|+
T Consensus        20 ~k~~~~l~~~~~~~~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~~~~~~~~~~l~   79 (80)
T cd05885          20 YRDRKELKGVISQQENGKTVSVSNTIRFPVDRKDDGAILSCEASHPALVSQKKQTQYSLD   79 (80)
T ss_pred             EECCEECCCCcccccCCceEEEEEEEEEEeeeccCCcEEEEEEEChhhCCCCeeEEEEEe
Confidence            7889998643211    10112347999999999999999999999886433  344444

Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.

>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0)

Probab=98.42  E-value=1e-06  Score=53.32  Aligned_cols=38  Identities=24%  Similarity=0.363  Sum_probs=29.3

Q ss_pred             cCCEEEEcccCCCCCeeeEEEeEeCCC-cccceeEEEEE
Q psy7035          19 SNQSLVLQNVSRARAGHYTCVGSNGEG-DGQSNAQKTAY   56 (70)
Q Consensus        19 ~~~tL~i~~v~~~D~G~Y~C~a~N~~G-~~~s~~~~L~V   56 (70)
                      .+.+|.|++++.+|+|.|+|...|.-+ ......++|.|
T Consensus        78 ~daSI~I~nv~~sD~G~Y~C~v~n~p~~~~~~~~~~l~v  116 (116)
T cd05879          78 KDGSIVIHNLDYTDNGTFTCDVKNPPDIVGKSSQVTLYV  116 (116)
T ss_pred             CeeEEEEccCCcccCEEEEEEEEcCCCcCCceeEEEEEC
Confidence            556999999999999999999999855 33334455543

Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.

>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)

Probab=98.37  E-value=1.3e-06  Score=48.79  Aligned_cols=55  Identities=11%  Similarity=0.134  Sum_probs=35.2

Q ss_pred             cccCeEcCcCccceEEecC-------CEEEEcccCCCCCeeeEEEeEeCCC-cccceeEEEEE
Q psy7035           2 SFSNVQLYNNISAGVIVSN-------QSLVLQNVSRARAGHYTCVGSNGEG-DGQSNAQKTAY   56 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~~~~-------~tL~i~~v~~~D~G~Y~C~a~N~~G-~~~s~~~~L~V   56 (70)
                      ++||+++...........+       .+|.|......|.|.|+|.|+|... .....+++|+|
T Consensus        20 ~~~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~l~~~~~~s~~l~v   82 (82)
T cd05759          20 FRDGEVLDGATYSKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNEALPTGKETSVTLDV   82 (82)
T ss_pred             EECCEEccCceeeeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCccCCCCcEEEEEEcC
Confidence            5788887543221222222       2688888888899999999999754 33444566554

Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=98.37  E-value=1.1e-06  Score=50.11  Aligned_cols=37  Identities=14%  Similarity=0.381  Sum_probs=29.0

Q ss_pred             cCCEEEEcccCCCCCeeeEEEeEe-CCCcccceeEEEEE
Q psy7035          19 SNQSLVLQNVSRARAGHYTCVGSN-GEGDGQSNAQKTAY   56 (70)
Q Consensus        19 ~~~tL~i~~v~~~D~G~Y~C~a~N-~~G~~~s~~~~L~V   56 (70)
                      .+.+|+|.+++.+|+|.|.|.+.+ ..|. ....+.|.|
T Consensus        60 ~~~sL~I~~v~~~D~G~Y~C~v~~~~~g~-~~~~~~l~V   97 (98)
T cd05718          60 EDATISISNLRLEDEGNYICEFATFPQGN-RQKVTTLTV   97 (98)
T ss_pred             CceEEEEccCCcccCEEEEEEEEeCCCCc-EEEEEEEEe
Confidence            356999999999999999999886 4554 344566766

Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c

>PHA02785 IL-beta-binding protein; Provisional

Probab=98.36  E-value=1.7e-06  Score=59.87  Aligned_cols=42  Identities=14%  Similarity=0.209  Sum_probs=33.3

Q ss_pred             EecCC-EEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeC
Q psy7035          17 IVSNQ-SLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIG   59 (70)
Q Consensus        17 ~~~~~-tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~   59 (70)
                      ..+++ .|.|.++..+|+|.|+|.|+|..|... ..+.|+|...
T Consensus        77 ~~~~g~~l~i~~~~~~DsG~Y~C~a~N~~g~~~-~s~~L~V~~~  119 (326)
T PHA02785         77 PIDNGSNMLILNPTQSDSGIYICITKNETYCDM-MSLNLTIVSV  119 (326)
T ss_pred             EccCCceEEEcccCcccCeEEEEEEECCCcceE-EEEEEEEEec
Confidence            34455 499999999999999999999988744 4678888643

>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively)

Probab=98.34  E-value=9.9e-07  Score=50.52  Aligned_cols=35  Identities=23%  Similarity=0.290  Sum_probs=27.3

Q ss_pred             CCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEE
Q psy7035          20 NQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAY   56 (70)
Q Consensus        20 ~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V   56 (70)
                      +.+|+|.+++.+|+|.|+|.+.+....  +..+.|+|
T Consensus        61 ~~~L~I~~v~~~DsG~Y~C~~~~~~~~--~~~~~~~v   95 (95)
T cd05717          61 ELSISISNVSLSDEGRYTCSLYTMPVQ--TAKATVTV   95 (95)
T ss_pred             eeEEEEccCCcccCEEEEEEEecCCCc--eEEEEEEC
Confidence            347999999999999999999987532  44455654

Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form

>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins

Probab=98.30  E-value=1.6e-06  Score=50.51  Aligned_cols=38  Identities=21%  Similarity=0.424  Sum_probs=32.0

Q ss_pred             cCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEE
Q psy7035          19 SNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYD   57 (70)
Q Consensus        19 ~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~   57 (70)
                      .+.+|+|.+++.+|+|.|.|.+.|..+. ....+.|.|.
T Consensus        66 ~~~sL~I~~v~~sD~G~Y~C~v~~~~~~-~~~~v~L~V~  103 (106)
T cd05714          66 GDASLVITDLRLEDSGRYRCEVIDGIED-EQDTVELEVR  103 (106)
T ss_pred             CcceEEECCCCHHHCEEEEEEEEcCCCc-eEEEEEEEEE
Confidence            3568999999999999999999997553 4667888886

Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.

>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)

Probab=98.30  E-value=1.2e-06  Score=51.74  Aligned_cols=33  Identities=27%  Similarity=0.521  Sum_probs=27.1

Q ss_pred             CEEEEcccCCCC-CeeeEEEeEeCCCcccceeEEE
Q psy7035          21 QSLVLQNVSRAR-AGHYTCVGSNGEGDGQSNAQKT   54 (70)
Q Consensus        21 ~tL~i~~v~~~D-~G~Y~C~a~N~~G~~~s~~~~L   54 (70)
                      .+|+|.++.+.| .|.|.|.|.|..|+..- .++|
T Consensus        64 S~L~I~~~~~~d~~g~Y~C~a~N~~G~d~~-~i~L   97 (98)
T cd05898          64 STLTINNIMEADFQTHYNCTAWNSFGSGTA-IIQL   97 (98)
T ss_pred             EEEEECCCccccCCcEEEEEEEeCCccceE-EEEe
Confidence            479999998877 89999999999998633 4554

Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.

>KOG4221|consensus

Probab=98.27  E-value=2.2e-06  Score=67.79  Aligned_cols=59  Identities=17%  Similarity=0.272  Sum_probs=50.8

Q ss_pred             ccCeEcCcCccceEEecCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeCCCC
Q psy7035           3 FSNVQLYNNISAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGLGI   62 (70)
Q Consensus         3 ~ng~~l~~~~~~~~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~p~~   62 (70)
                      ||.+++..++ +.+.+.+|.|.|.+++..|.|.|.|.++|..-+..|..+.|+|...|..
T Consensus       176 kn~~pl~~~~-r~i~lpsG~L~I~~~qp~d~g~yrc~vt~g~~~r~S~~a~ltv~s~~~~  234 (1381)
T KOG4221|consen  176 KNDQPLPLDS-RVIVLPSGALEISGLQPSDTGEYRCVVTGGASQRTSNEAELTVLSDPGA  234 (1381)
T ss_pred             cccccccCCC-cEEEcCCCcEEecccccCCCceEEEEEecCCcCCccceeEEEecCCccc
Confidence            5566677776 6677899999999999999999999999998888899999999966643

>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins

Probab=98.27  E-value=2.7e-06  Score=50.05  Aligned_cols=37  Identities=19%  Similarity=0.385  Sum_probs=29.8

Q ss_pred             cCCEEEEcccCCCCCeeeEEEeEe-CCCcccceeEEEEE
Q psy7035          19 SNQSLVLQNVSRARAGHYTCVGSN-GEGDGQSNAQKTAY   56 (70)
Q Consensus        19 ~~~tL~i~~v~~~D~G~Y~C~a~N-~~G~~~s~~~~L~V   56 (70)
                      .+.+|.|.+++.+|+|.|.|...+ +.|.. ...+.|.|
T Consensus        58 ~d~sl~i~nv~~~D~G~Y~C~v~tfP~G~~-~~~~~l~~   95 (96)
T cd05887          58 LDATIMLENVGFSDIGVYICKAVTFPLGNT-QSSTTVTV   95 (96)
T ss_pred             CccEEEEeCCCccccEEEEEEEEeCCCCCe-eEEEEEEE
Confidence            478999999999999999998665 57764 44667776

Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also

>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP)

Probab=98.24  E-value=2.1e-06  Score=49.95  Aligned_cols=36  Identities=25%  Similarity=0.332  Sum_probs=30.4

Q ss_pred             CEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEE
Q psy7035          21 QSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYD   57 (70)
Q Consensus        21 ~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~   57 (70)
                      .+|.|.+++.+|+|.|.|.+.|..+.. ...+.|.|.
T Consensus        68 ~sL~I~~v~~~DsG~Y~C~v~~~~~~~-~~~~~l~v~  103 (106)
T cd05877          68 ASLVITDLRLEDYGRYRCEVIDGLEDE-SVVVALRLR  103 (106)
T ss_pred             EEEEEccCChHHCEEEEEEEEecccce-EEEEEEEEE
Confidence            489999999999999999999987754 556777774

Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C

Probab=98.23  E-value=1.1e-06  Score=46.89  Aligned_cols=26  Identities=46%  Similarity=0.814  Sum_probs=23.5

Q ss_pred             EecCCEEEEcccCCCCCeeeEEEeEe
Q psy7035          17 IVSNQSLVLQNVSRARAGHYTCVGSN   42 (70)
Q Consensus        17 ~~~~~tL~i~~v~~~D~G~Y~C~a~N   42 (70)
                      ...+++|.|.+++.+|.|.|+|.|+|
T Consensus        50 ~~~~~~L~i~~v~~~~~g~y~C~a~N   75 (75)
T PF13927_consen   50 SSSNSTLTISNVTRSDNGTYTCIASN   75 (75)
T ss_dssp             EEEEEEEEESSCCGGGTEEEEEEEEE
T ss_pred             cceeeEEEEccCCHHhCcEEEEEEEC
Confidence            34567999999999999999999998

...

>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins

Probab=98.21  E-value=2.8e-06  Score=50.49  Aligned_cols=36  Identities=22%  Similarity=0.294  Sum_probs=28.2

Q ss_pred             CEEEEcccCCCCCeeeEEEeEeCCCcc-cceeEEEEE
Q psy7035          21 QSLVLQNVSRARAGHYTCVGSNGEGDG-QSNAQKTAY   56 (70)
Q Consensus        21 ~tL~i~~v~~~D~G~Y~C~a~N~~G~~-~s~~~~L~V   56 (70)
                      .+|+|.+++.+|+|.|.|.+.|.-... .+..++|.|
T Consensus        80 ~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~~~~~~~~  116 (116)
T cd05715          80 ASIVIHNLQFTDNGTYTCDVKNPPDIVGKPGEIRLRV  116 (116)
T ss_pred             eEEEEeeCCcccCEEEEEEEEeCCCCCCCccEEEEeC
Confidence            589999999999999999999975532 234566654

Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2

>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA)

Probab=98.20  E-value=2.8e-06  Score=50.86  Aligned_cols=37  Identities=19%  Similarity=0.324  Sum_probs=29.2

Q ss_pred             CCEEEEcccCCCCCeeeEEEeEeCCCc-ccceeEEEEE
Q psy7035          20 NQSLVLQNVSRARAGHYTCVGSNGEGD-GQSNAQKTAY   56 (70)
Q Consensus        20 ~~tL~i~~v~~~D~G~Y~C~a~N~~G~-~~s~~~~L~V   56 (70)
                      +.+|+|.+++.+|+|.|.|.+.|.-+. .....+.|.|
T Consensus        78 ~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~~~~~~~~  115 (115)
T cd05880          78 DASILIWQLQPTDNGTYTCQVKNPPDVHGPIGEIRLRV  115 (115)
T ss_pred             ceEEEEeeCChhhCEEEEEEEEeCCCCCCCccEEEEeC
Confidence            458999999999999999999997663 2344566654

Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.

>KOG4194|consensus

Probab=98.19  E-value=2.9e-06  Score=64.09  Aligned_cols=50  Identities=20%  Similarity=0.214  Sum_probs=42.0

Q ss_pred             CccceEEecCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeCCC
Q psy7035          11 NISAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGLG   61 (70)
Q Consensus        11 ~~~~~~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~p~   61 (70)
                      ..+..+..++.-..|.||+.+|+|.|+|.|.|.+|+. +..++|.|...|.
T Consensus       659 eRRl~Vmpedd~f~Itnvk~eD~GiYtC~A~n~AG~i-sanAtL~V~e~p~  708 (873)
T KOG4194|consen  659 ERRLHVMPEDDVFFITNVKIEDQGIYTCTAQNVAGQI-SANATLTVLETPS  708 (873)
T ss_pred             hheeeecCCCCEEEEecccccccceeEEeeeccccce-eeceEEEEecCCc
Confidence            3345566677889999999999999999999999986 5578999997764

>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B

Probab=98.16  E-value=5.9e-06  Score=47.72  Aligned_cols=42  Identities=26%  Similarity=0.413  Sum_probs=30.8

Q ss_pred             cccCeEcCcCccceEEecCCEEEEcccCCCCCeeeEEEeEeCCCc
Q psy7035           2 SFSNVQLYNNISAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGD   46 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~   46 (70)
                      ++||.++..+.+  +.....-|.|.+++.+|+|.|+|.|. ..|.
T Consensus        30 ~~ng~~l~~~~r--~~~~~~GLlI~~~~~~dsG~Y~C~s~-E~gf   71 (85)
T cd05872          30 LFNGTPLNAQFS--YRVGTDGLLILVTSPEHSGTYRCYSE-EEGF   71 (85)
T ss_pred             EECCcccCCCcc--eEEeCCCCEEEECCHhhCEEEEEEEe-cCCC
Confidence            478888876543  33344558899999999999999987 3343

Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.

>PHA02633 hypothetical protein; Provisional

Probab=98.15  E-value=9.3e-06  Score=44.77  Aligned_cols=41  Identities=12%  Similarity=0.271  Sum_probs=32.0

Q ss_pred             cCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeCC
Q psy7035          19 SNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGL   60 (70)
Q Consensus        19 ~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~p   60 (70)
                      ....|+|-+++.+|+|.|.|..+|..-.... ++.|.|.-..
T Consensus        16 ~~~nLwilpa~~sDSGiYiC~~rn~t~c~~~-si~l~V~~~~   56 (63)
T PHA02633         16 NCNNMLILNPTQSDSGIYMCITKNETYSDMM-KFDLCICLRI   56 (63)
T ss_pred             ccccEEEeccccccCcEEEEEEcCCCeeEEE-EEEEEEeecc
Confidence            4568999999999999999999986544333 5777777554

>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins

Probab=98.13  E-value=6e-06  Score=47.67  Aligned_cols=38  Identities=21%  Similarity=0.366  Sum_probs=30.7

Q ss_pred             cCCEEEEcccCCCCCeeeEEEeEe-CCCcccceeEEEEEE
Q psy7035          19 SNQSLVLQNVSRARAGHYTCVGSN-GEGDGQSNAQKTAYD   57 (70)
Q Consensus        19 ~~~tL~i~~v~~~D~G~Y~C~a~N-~~G~~~s~~~~L~V~   57 (70)
                      .+.+|+|.+++.+|+|.|.|...+ +.|. .+..+.|+|+
T Consensus        59 ~~~sL~I~nv~~~D~G~Y~C~~~~~p~g~-~~~~~~L~v~   97 (97)
T cd05846          59 NSTSITIWNVTLEDEGCYKCIFNTFPDGS-KSGTMCLTVY   97 (97)
T ss_pred             CccEEEEeCCceeeeEEEEEEEEeCCCCC-eeeEEEEEEC
Confidence            456899999999999999998776 4555 5667888873

Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.

>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan

Probab=98.10  E-value=9e-06  Score=48.91  Aligned_cols=38  Identities=16%  Similarity=0.327  Sum_probs=30.9

Q ss_pred             cCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEE
Q psy7035          19 SNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYD   57 (70)
Q Consensus        19 ~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~   57 (70)
                      .+-+|+|.+++.+|+|.|.|...+... ..+..+.|.|.
T Consensus        72 ~~asL~I~nl~~sDsG~Y~C~V~~g~~-~~~~~v~l~v~  109 (112)
T cd05900          72 SDATLEITELRSNDSGTYRCEVMHGIE-DNYDTVEVQVK  109 (112)
T ss_pred             CCcEEEEeecccccCEEEEEEEecCCC-CceeEEEEEEE
Confidence            466999999999999999999996544 34667777775

Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=98.09  E-value=1.5e-05  Score=46.84  Aligned_cols=34  Identities=24%  Similarity=0.336  Sum_probs=25.1

Q ss_pred             cCccceEEe-cCC--EEEEcccCCCCCeeeEEEeEeC
Q psy7035          10 NNISAGVIV-SNQ--SLVLQNVSRARAGHYTCVGSNG   43 (70)
Q Consensus        10 ~~~~~~~~~-~~~--tL~i~~v~~~D~G~Y~C~a~N~   43 (70)
                      .++|....- ++.  +|.|++++.+|+|.|+|.+...
T Consensus        48 ~d~Rf~~~~~~~~~~tL~I~~vq~~D~G~Y~Cqv~t~   84 (95)
T cd05881          48 KDSRFQLVNFSSNELRVSLSNVSLSDEGRYFCQLYTD   84 (95)
T ss_pred             CCcCEEEEeCCCCEEEEEECcCCcccCEEEEEEEEcc
Confidence            455544332 233  6999999999999999999763

Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a

>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4

Probab=98.09  E-value=1.8e-06  Score=50.57  Aligned_cols=26  Identities=15%  Similarity=0.390  Sum_probs=23.7

Q ss_pred             EEEEcccCCCCCeeeEEEeEeCCCcc
Q psy7035          22 SLVLQNVSRARAGHYTCVGSNGEGDG   47 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N~~G~~   47 (70)
                      +|+|.+++.+|+|.|.|.+.|..++.
T Consensus        66 ~L~I~~l~~sDsgtY~C~v~~~~~~~   91 (94)
T cd07690          66 PLIIKNLKIEDSDTYICEVEDKKEEV   91 (94)
T ss_pred             EEEECCCCHHHCEEEEEEECCccceE
Confidence            59999999999999999999987654

Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)

Probab=98.07  E-value=1.1e-05  Score=47.99  Aligned_cols=37  Identities=16%  Similarity=0.313  Sum_probs=30.5

Q ss_pred             CCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEE
Q psy7035          20 NQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYD   57 (70)
Q Consensus        20 ~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~   57 (70)
                      +.+|+|.+++.+|+|.|.|....... .....+.|+|.
T Consensus        71 ~asL~I~~l~~sD~G~Y~C~v~~~~~-~~~~~v~l~V~  107 (110)
T cd05878          71 DASLEISRLRSSDSGVYRCEVMHGIE-DEQDTVPLEVT  107 (110)
T ss_pred             cEEEEECCCChhhCEEEEEEEEeCCC-cceEEEEEEEE
Confidence            45799999999999999999998654 34557888886

Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi

>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=98.05  E-value=1.2e-05  Score=45.87  Aligned_cols=35  Identities=26%  Similarity=0.419  Sum_probs=27.5

Q ss_pred             EEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEE
Q psy7035          22 SLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAY   56 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V   56 (70)
                      +|+|.+++.+|+|.|.|.............+.|.|
T Consensus        80 sL~i~~l~~~DsG~Y~C~v~~~~~~~~~~~~~L~V  114 (114)
T PF07686_consen   80 SLTIKNLQPSDSGTYFCQVSTSNEQSFGNGTKLTV  114 (114)
T ss_dssp             EEEESSESGGGEEEEEEEEEESSEEEEEEEEEEEE
T ss_pred             EEEECCCCcCcCEEEEEEEEECCCCEECCcEEEEC
Confidence            79999999999999999999874444444555554

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....

>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins

Probab=97.93  E-value=3.5e-05  Score=45.25  Aligned_cols=28  Identities=25%  Similarity=0.445  Sum_probs=24.2

Q ss_pred             cCCEEEEcccCCCCCeeeEEEeEeC-CCc
Q psy7035          19 SNQSLVLQNVSRARAGHYTCVGSNG-EGD   46 (70)
Q Consensus        19 ~~~tL~i~~v~~~D~G~Y~C~a~N~-~G~   46 (70)
                      .+.+|+|.||+.+|+|.|+|..... .|.
T Consensus        58 ~d~sI~i~nvt~~D~G~Y~C~~~t~P~g~   86 (96)
T cd05889          58 EDMSLSFNNATEEDVGLYCCSLVTYPQGS   86 (96)
T ss_pred             CccEEEEcCCCcccCEEEEEEEEeCCCCC
Confidence            4689999999999999999988774 664

Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.

>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan

Probab=97.92  E-value=2.1e-05  Score=47.18  Aligned_cols=37  Identities=24%  Similarity=0.380  Sum_probs=30.6

Q ss_pred             CCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEE
Q psy7035          20 NQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYD   57 (70)
Q Consensus        20 ~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~   57 (70)
                      +-+|.|.+++.+|+|.|.|...... +.....+.|+|.
T Consensus        71 ~asL~i~nv~~~D~G~Y~C~v~~g~-~~~~~~v~L~V~  107 (110)
T cd05902          71 NASLVLSRLRYSDSGTYRCEVVLGI-NDEQDTVPLEVT  107 (110)
T ss_pred             eEEEEECCCCHHHCEEEEEEEEECC-cccEEEEEEEEE
Confidence            4589999999999999999999854 445667888875

Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen

>cd00099 IgV Immunoglobulin variable domain (IgV)

Probab=97.90  E-value=9.8e-06  Score=46.47  Aligned_cols=24  Identities=21%  Similarity=0.409  Sum_probs=22.4

Q ss_pred             EEEEcccCCCCCeeeEEEeEeCCC
Q psy7035          22 SLVLQNVSRARAGHYTCVGSNGEG   45 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N~~G   45 (70)
                      +|+|.+++.+|+|.|.|.+.+..+
T Consensus        68 sL~I~~v~~~D~G~Y~C~v~~~~~   91 (105)
T cd00099          68 TLTISSLQPEDSAVYYCAVSLSGG   91 (105)
T ss_pred             EEEECCCCHHHCEEEEEEEecCCC
Confidence            899999999999999999998764

IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins

Probab=97.88  E-value=2.1e-05  Score=45.63  Aligned_cols=24  Identities=21%  Similarity=0.295  Sum_probs=21.8

Q ss_pred             CEEEEcccCCCCCeeeEEEeEeCC
Q psy7035          21 QSLVLQNVSRARAGHYTCVGSNGE   44 (70)
Q Consensus        21 ~tL~i~~v~~~D~G~Y~C~a~N~~   44 (70)
                      -+|.|.+++.+|+|.|.|.+.+..
T Consensus        70 ~~L~I~~~~~~DsG~Y~C~~~~~~   93 (109)
T cd04983          70 SSLHISAAQLSDSAVYFCALSESG   93 (109)
T ss_pred             EEEEECCCCHHHCEEEEEEEecCC
Confidence            379999999999999999999864

IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>KOG4194|consensus

Probab=97.87  E-value=2.3e-05  Score=59.32  Aligned_cols=42  Identities=29%  Similarity=0.360  Sum_probs=38.9

Q ss_pred             CEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeCCCC
Q psy7035          21 QSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGLGI   62 (70)
Q Consensus        21 ~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~p~~   62 (70)
                      +.|.+.||+-.|+|.|+|+++|-.|++.|..+.|+|...|..
T Consensus       574 ~~L~L~nVt~td~grYQCVvtN~FGStysqk~KltV~~~PsF  615 (873)
T KOG4194|consen  574 AILHLDNVTFTDEGRYQCVVTNHFGSTYSQKAKLTVNQAPSF  615 (873)
T ss_pred             heeeeeeeecccCceEEEEEecccCcchhheeEEEeeccCcc
Confidence            579999999999999999999999999999999999977743

>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican

Probab=97.86  E-value=5e-05  Score=46.33  Aligned_cols=38  Identities=21%  Similarity=0.356  Sum_probs=31.6

Q ss_pred             cCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEE
Q psy7035          19 SNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYD   57 (70)
Q Consensus        19 ~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~   57 (70)
                      .+-+|.|.+++.+|+|.|.|...+.... ....+.|+|.
T Consensus        77 g~asL~i~~v~~sD~G~Y~C~V~~g~~~-~~~~v~L~V~  114 (117)
T cd05901          77 GDASLTIVKLRASDAGVYRCEVMHGIED-TQDTVSLDVS  114 (117)
T ss_pred             CceEEEEcccccccCEEEEEEEEECCcc-cEEEEEEEEE
Confidence            3569999999999999999999987654 4557888875

Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA

>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR)

Probab=97.67  E-value=0.00011  Score=43.91  Aligned_cols=36  Identities=22%  Similarity=0.295  Sum_probs=29.3

Q ss_pred             CEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEE
Q psy7035          21 QSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYD   57 (70)
Q Consensus        21 ~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~   57 (70)
                      ..|.|.++..+|+|.|+|.|+|..+.. +-++.|.|+
T Consensus        65 S~L~L~Rlk~~E~G~YTf~a~N~~~~~-s~tF~l~v~  100 (101)
T cd05860          65 SELHLTRLKGTEGGTYTFLVSNSDASA-SVTFNVYVN  100 (101)
T ss_pred             EEEEEeecChhhCcEEEEEEECCCCeE-EEEEEEEEe
Confidence            579999999999999999999987753 445666654

Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.

>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain

Probab=97.65  E-value=7.5e-05  Score=42.91  Aligned_cols=22  Identities=18%  Similarity=0.338  Sum_probs=20.3

Q ss_pred             EEEEcccCCCCCeeeEEEeEeC
Q psy7035          22 SLVLQNVSRARAGHYTCVGSNG   43 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N~   43 (70)
                      +|+|++++.+|+|.|.|.+.+.
T Consensus        64 ~L~I~~~~~~Dsg~Y~C~~~~~   85 (98)
T cd04984          64 SLTISGAQTEDEADYYCQVWDS   85 (98)
T ss_pred             EEEECCCChhhCEEEEEEEccC
Confidence            6999999999999999998764

IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain

Probab=97.63  E-value=5.6e-05  Score=44.01  Aligned_cols=22  Identities=23%  Similarity=0.371  Sum_probs=20.3

Q ss_pred             EEEEcccCCCCCeeeEEEeEeC
Q psy7035          22 SLVLQNVSRARAGHYTCVGSNG   43 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N~   43 (70)
                      +|.|++++.+|+|.|.|.+.+.
T Consensus        72 ~L~I~~~~~~Dsg~Y~Ca~~~~   93 (106)
T cd04980          72 TLTISRVEPEDAAVYYCQQYGT   93 (106)
T ss_pred             EEEECCCChHHCEEEEEEEeCC
Confidence            6999999999999999999764

IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=97.60  E-value=0.00035  Score=40.15  Aligned_cols=58  Identities=9%  Similarity=0.007  Sum_probs=39.9

Q ss_pred             cccCeEcCcCccceEEe-----cCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeC
Q psy7035           2 SFSNVQLYNNISAGVIV-----SNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIG   59 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~~-----~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~   59 (70)
                      |++|+++..........     .-.+|.|..-+..|...|+|.|.|..=........|+|+|.
T Consensus        20 ~k~~~~l~~~~~~~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~~~l~~~~~~~~L~V~y~   82 (82)
T cd05883          20 FKGNKELTGKSTVEETWSRMFTVTSQLMLKVTKEDDGVPVICLVDHPAVKDLQTQRYLEVQYK   82 (82)
T ss_pred             EECCEECcCcccceeccCCCcEEEEEEEEECchhhCCCEEEEEEcCcccCCceeeEEEEEEEC
Confidence            67888886432110011     12468887777788888999999976555777899999873

Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.

>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain

Probab=97.51  E-value=0.00013  Score=42.71  Aligned_cols=24  Identities=25%  Similarity=0.470  Sum_probs=21.6

Q ss_pred             CEEEEcccCCCCCeeeEEEeEeCC
Q psy7035          21 QSLVLQNVSRARAGHYTCVGSNGE   44 (70)
Q Consensus        21 ~tL~i~~v~~~D~G~Y~C~a~N~~   44 (70)
                      -+|.|.+++.+|+|.|.|.+.+..
T Consensus        72 ~~L~I~~~~~~Dsg~Y~Ca~~~~~   95 (110)
T cd05899          72 SSLTIKSAEPEDSAVYLCASSLGG   95 (110)
T ss_pred             cEEEECCCChhhCEEEEEEeeCCC
Confidence            479999999999999999998753

IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR)

Probab=97.51  E-value=0.00012  Score=41.91  Aligned_cols=23  Identities=22%  Similarity=0.465  Sum_probs=21.0

Q ss_pred             EEEEcccCCCCCeeeEEEeEeCC
Q psy7035          22 SLVLQNVSRARAGHYTCVGSNGE   44 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N~~   44 (70)
                      +|+|.+++.+|+|.|.|.+....
T Consensus        65 ~L~I~~v~~~DsG~Y~C~~~~~~   87 (98)
T cd05716          65 TVTLNQLRKEDAGWYWCGVGDDG   87 (98)
T ss_pred             EEEEcCCCHHHCEEEEEEcccCC
Confidence            79999999999999999888753

Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.

>PHA02987 Ig domain OX-2-like protein; Provisional

Probab=97.45  E-value=0.00059  Score=44.82  Aligned_cols=40  Identities=18%  Similarity=0.310  Sum_probs=32.3

Q ss_pred             cCCEEEEcccCCCCCeeeEEEeEe-CCCcccceeEEEEEEe
Q psy7035          19 SNQSLVLQNVSRARAGHYTCVGSN-GEGDGQSNAQKTAYDI   58 (70)
Q Consensus        19 ~~~tL~i~~v~~~D~G~Y~C~a~N-~~G~~~s~~~~L~V~~   58 (70)
                      .+.+|+|.+|+++|+|.|.|...= +.|..++..+-|+|..
T Consensus        83 ~~StItIknVt~sDeGcY~C~F~tfp~G~~~~gt~CLtVt~  123 (189)
T PHA02987         83 NESTILIKNVSLKDNGCYTCIFNTLLSKNNEKGVVCLNVTT  123 (189)
T ss_pred             CcceEEEEeCChhhCeEEEEEEEecCCCCCceeEEEEEEEc
Confidence            677999999999999999996543 5665567778888874

>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain

Probab=97.42  E-value=0.00013  Score=42.80  Aligned_cols=33  Identities=21%  Similarity=0.394  Sum_probs=26.1

Q ss_pred             EEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeCCCCCC
Q psy7035          22 SLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGLGIPA   64 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~p~~~~   64 (70)
                      +|+|.+++.+|+|.|.|...+.          -.+.+|+++|+
T Consensus        70 ~L~I~~~~~sDsgtY~Ca~~~~----------~~~~Fg~~~~~  102 (104)
T cd05720          70 VLTLKNFQKENEGYYFCSVASN----------SVLYFSSFVPV  102 (104)
T ss_pred             EEEECCCCHHHCEEEEEEEccC----------CceEEcCceec
Confidence            6999999999999999987642          25667776654

Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.

>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain

Probab=97.41  E-value=0.00016  Score=42.43  Aligned_cols=22  Identities=23%  Similarity=0.496  Sum_probs=19.8

Q ss_pred             EEEEcccCCCCCeeeEEEeEeC
Q psy7035          22 SLVLQNVSRARAGHYTCVGSNG   43 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N~   43 (70)
                      +|+|.+++.+|+|.|.|...+.
T Consensus        73 ~L~I~~~~~~Dsg~YyCa~~~~   94 (107)
T cd07700          73 RLHINRVKPEDSGTYFCMTVGS   94 (107)
T ss_pred             EEEECCCCHHHCEEEEEeEcCC
Confidence            5999999999999999998643

IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.

>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells

Probab=97.37  E-value=0.00085  Score=40.56  Aligned_cols=56  Identities=13%  Similarity=0.052  Sum_probs=42.4

Q ss_pred             cccCeEcCc----CccceEEecCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEE
Q psy7035           2 SFSNVQLYN----NISAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYD   57 (70)
Q Consensus         2 ~~ng~~l~~----~~~~~~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~   57 (70)
                      |+||.....    +++..+...|-+|.|..++..|+|.|.-+.+|..|......+++.|.
T Consensus        48 W~n~~~~~~~~~~n~r~~F~~enlaLlIkaAq~qDSG~Y~LEvT~~sG~V~~~~FqVsVF  107 (108)
T PF11465_consen   48 WKNDSTPSYNSSFNNRFNFTSENLALLIKAAQPQDSGLYCLEVTNESGKVCTKNFQVSVF  107 (108)
T ss_dssp             EETTEEEESSTTHHHHEEEETTTTEEEESS-SGGG-EEEEEEEEETTSCEEEEEEEEEEE
T ss_pred             EcCCCcccccccccceEeeeccCceEEEeecCcccCceEEEEEEcCCCcEEEEEEEEEee
Confidence            445544432    34556777899999999999999999999999999988777777775

It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.

>KOG4222|consensus

Probab=97.34  E-value=0.00025  Score=56.30  Aligned_cols=53  Identities=17%  Similarity=0.280  Sum_probs=43.0

Q ss_pred             cceEEecCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeCCCCCCCC
Q psy7035          13 SAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGLGIPAEP   66 (70)
Q Consensus        13 ~~~~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~p~~~~~p   66 (70)
                      +..+..++.+|.|.+++..|.|.|.|.|.|.+|.. +..+.|+|+.+|..-.+|
T Consensus       270 ry~i~~d~qtl~i~r~tp~deg~y~C~a~n~vG~l-~asa~ltV~apP~f~kkp  322 (1281)
T KOG4222|consen  270 RYSILDDTQTLRIDRVTPTDEGTYVCPAENLVGGL-EASATLTVQAPPSFGKKP  322 (1281)
T ss_pred             ceeeeeccccccccccCCCcccceeeecccccccc-ccccceEEecCccccccc
Confidence            34455667999999999999999999999999975 457899999888654433

>KOG1480|consensus

Probab=97.23  E-value=0.00022  Score=54.92  Aligned_cols=57  Identities=16%  Similarity=0.244  Sum_probs=45.6

Q ss_pred             cccCeEcCcCccceEEecCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeC
Q psy7035           2 SFSNVQLYNNISAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIG   59 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~   59 (70)
                      ++|+..+.. ++.......+.|+|..++..|.|+|+|+|.|..+...+.++...|+..
T Consensus       165 ~k~e~~~~p-d~n~~~~~d~~li~~~arlsd~~nytc~a~ni~~~r~~~~~~v~vyv~  221 (909)
T KOG1480|consen  165 LKNEVVIDP-DANVIRASDHNLIISQARLSDSGNYTCEATNIVAKRKSDPATVQVYVN  221 (909)
T ss_pred             cccCCCCCc-cccchhhhcCCccccchhhhhcccceeeeehhhccccccceEEEEEEc
Confidence            455555555 333445577899999999999999999999999999999888888753

>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains

Probab=97.20  E-value=0.00058  Score=38.31  Aligned_cols=36  Identities=22%  Similarity=0.254  Sum_probs=30.3

Q ss_pred             cCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeC
Q psy7035          19 SNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIG   59 (70)
Q Consensus        19 ~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~   59 (70)
                      .+.+|-+.++.+.=.|.|+|.++|     .+....|.|+|.
T Consensus        31 ~~~tlnLGs~~~DPRG~Y~C~~s~-----~~~~~~LQVyYR   66 (69)
T cd07691          31 SNTLLDLGSRINDPRGTYSCKESE-----PNKEKTLQVYYR   66 (69)
T ss_pred             cccEEeccCcccCCCcceEecCcc-----CCCcEEEEEEEE
Confidence            467899999999999999999988     345678888874

Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>smart00406 IGv Immunoglobulin V-Type

Probab=97.19  E-value=0.0002  Score=38.73  Aligned_cols=19  Identities=32%  Similarity=0.618  Sum_probs=17.6

Q ss_pred             CEEEEcccCCCCCeeeEEE
Q psy7035          21 QSLVLQNVSRARAGHYTCV   39 (70)
Q Consensus        21 ~tL~i~~v~~~D~G~Y~C~   39 (70)
                      -+|.|++++.+|+|.|.|.
T Consensus        62 ~~L~i~~~~~~D~G~Y~C~   80 (81)
T smart00406       62 VSLTISNLRVEDTGTYYCA   80 (81)
T ss_pred             EEEEEcCCCHHHCEEEEEc
Confidence            3799999999999999996

>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI

Probab=97.18  E-value=0.00081  Score=38.78  Aligned_cols=35  Identities=37%  Similarity=0.446  Sum_probs=27.2

Q ss_pred             EEEEcccCCCCCeeeEEEeEe----CCCcccceeEEEEE
Q psy7035          22 SLVLQNVSRARAGHYTCVGSN----GEGDGQSNAQKTAY   56 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N----~~G~~~s~~~~L~V   56 (70)
                      .+.|.+++.+|+|.|.|...-    ..-+..|+++.|.|
T Consensus        56 ~f~I~~~~~~~~G~Y~C~~~~~~~~~~wS~~Sdpl~l~V   94 (94)
T cd05711          56 SFPLGPVTPAHAGTYRCYGSYNHSLYEWSAPSDPLKIVV   94 (94)
T ss_pred             EEEecCCCcccCEEEEEEEECCCCCccccCCCCCeEEeC
Confidence            689999999999999998642    12356677877765

IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.

>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain

Probab=97.12  E-value=0.00067  Score=39.99  Aligned_cols=22  Identities=23%  Similarity=0.330  Sum_probs=20.3

Q ss_pred             EEEEcccCCCCCeeeEEEeEeC
Q psy7035          22 SLVLQNVSRARAGHYTCVGSNG   43 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N~   43 (70)
                      +|+|.+++.+|+|.|.|.+...
T Consensus        73 sL~I~~~~~~Dsg~Y~C~~~~~   94 (116)
T cd07706          73 SLTISALQLEDSAKYFCALSTL   94 (116)
T ss_pred             EEEECCCCHHHCEEEEEEEECC
Confidence            7999999999999999998853

IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain

Probab=97.08  E-value=0.00041  Score=40.75  Aligned_cols=21  Identities=24%  Similarity=0.502  Sum_probs=19.7

Q ss_pred             EEEEcccCCCCCeeeEEEeEe
Q psy7035          22 SLVLQNVSRARAGHYTCVGSN   42 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N   42 (70)
                      +|+|.+++.+|+|.|.|.+..
T Consensus        78 ~L~I~~~~~~Dsg~Y~C~~~~   98 (116)
T cd04982          78 TLTIQNLEKEDSATYYCAYWE   98 (116)
T ss_pred             EEEEEECCHHHCEEEEEEEec
Confidence            799999999999999999875

IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd00096 Ig Immunoglobulin domain

Probab=97.03  E-value=0.00079  Score=33.52  Aligned_cols=26  Identities=38%  Similarity=0.714  Sum_probs=23.1

Q ss_pred             cCCEEEEcccCCCCCeeeEEEeEeCC
Q psy7035          19 SNQSLVLQNVSRARAGHYTCVGSNGE   44 (70)
Q Consensus        19 ~~~tL~i~~v~~~D~G~Y~C~a~N~~   44 (70)
                      ...+|.|.+++.+|+|.|.|.+.+..
T Consensus        41 ~~~~l~i~~~~~~d~g~y~C~~~~~~   66 (74)
T cd00096          41 GSSTLTISNVTLEDSGTYTCVASNSA   66 (74)
T ss_pred             eEEEEEECccCcccCcEEEEEEecCc
Confidence            45689999999999999999999875

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals

Probab=96.97  E-value=0.0022  Score=44.15  Aligned_cols=39  Identities=26%  Similarity=0.325  Sum_probs=29.5

Q ss_pred             cCeEcCcCccceEEecCCEEEEcccCCCCCeeeEEEeEeC
Q psy7035           4 SNVQLYNNISAGVIVSNQSLVLQNVSRARAGHYTCVGSNG   43 (70)
Q Consensus         4 ng~~l~~~~~~~~~~~~~tL~i~~v~~~D~G~Y~C~a~N~   43 (70)
                      ||+.|..+.. ..+-+.|.|++++...+++|.|+|.-+-.
T Consensus        21 ~g~~l~gn~~-~nIT~TG~L~~~~F~esmSG~YTCtLsYk   59 (271)
T PF07354_consen   21 NGKPLSGNSY-VNITETGKLMFKNFQESMSGSYTCTLSYK   59 (271)
T ss_pred             CCcccCCCCe-EEEccCceEEeeccccccCCceEEEEEEE
Confidence            4555655543 34447889999999999999999987754

These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region

>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=96.88  E-value=0.0047  Score=34.84  Aligned_cols=55  Identities=13%  Similarity=0.120  Sum_probs=32.8

Q ss_pred             cccCeEcCcCccceEEecC-CE------EEEcccCCCCCeeeEEEeEeCCC--cccceeEEEEE
Q psy7035           2 SFSNVQLYNNISAGVIVSN-QS------LVLQNVSRARAGHYTCVGSNGEG--DGQSNAQKTAY   56 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~~~~-~t------L~i~~v~~~D~G~Y~C~a~N~~G--~~~s~~~~L~V   56 (70)
                      ++||++|...........+ ++      |.|......|...|+|.|.|...  ...+....|+|
T Consensus        20 ~k~g~~l~~~~~~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~l~~~~~~~~~~~~~   83 (83)
T cd07705          20 RKGDQELEGAPTSVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHESLHDSDRSTSQRIEV   83 (83)
T ss_pred             EECCEECCCcceeEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECcccCCCCceeEEEeeC
Confidence            5788887643221111222 23      44545556777999999999864  34555666654

Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel

>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively)

Probab=96.74  E-value=0.0061  Score=34.08  Aligned_cols=45  Identities=11%  Similarity=-0.054  Sum_probs=26.9

Q ss_pred             cccCeEcCcCccceEEe-cCC------EEEEcccCCCCCeeeEEEeEeCCCcc
Q psy7035           2 SFSNVQLYNNISAGVIV-SNQ------SLVLQNVSRARAGHYTCVGSNGEGDG   47 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~~-~~~------tL~i~~v~~~D~G~Y~C~a~N~~G~~   47 (70)
                      ++||+++.... ..... .++      +|.+......|.+.|+|.|.|.....
T Consensus        20 ~~~~~~l~~~~-~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~~l~~   71 (82)
T cd05761          20 FKGDKELKGVK-LKEEDENGKTFTVTSSLRFQVDREDDGAPIICRVDHPALKS   71 (82)
T ss_pred             EECCEEccCce-eeEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeChhcCC
Confidence            56788775332 22222 222      35555555566779999999986653

Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel

>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins)

Probab=96.64  E-value=0.0018  Score=38.57  Aligned_cols=23  Identities=22%  Similarity=0.313  Sum_probs=20.4

Q ss_pred             CEEEEcccCCCCCeeeEEEeEeC
Q psy7035          21 QSLVLQNVSRARAGHYTCVGSNG   43 (70)
Q Consensus        21 ~tL~i~~v~~~D~G~Y~C~a~N~   43 (70)
                      -+|+|.+++.+|+|.|.|..+..
T Consensus        80 ~sL~I~~l~~~Dsg~Y~C~~~~~  102 (119)
T cd05712          80 CSLLISDAQPEDSGKYFFRVELG  102 (119)
T ss_pred             EEEEEccCChhhCeEEEEEEEcC
Confidence            37999999999999999987663

Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.

>cd00098 IgC Immunoglobulin Constant domain

Probab=96.40  E-value=0.006  Score=34.19  Aligned_cols=44  Identities=18%  Similarity=0.210  Sum_probs=27.7

Q ss_pred             cccCeEcCcCcc-ce-EEecCC------EEEEcccCCCCCeeeEEEeEeCCC
Q psy7035           2 SFSNVQLYNNIS-AG-VIVSNQ------SLVLQNVSRARAGHYTCVGSNGEG   45 (70)
Q Consensus         2 ~~ng~~l~~~~~-~~-~~~~~~------tL~i~~v~~~D~G~Y~C~a~N~~G   45 (70)
                      ++||+++..... .. ....++      +|.|......|.|.|+|.|.|...
T Consensus        35 ~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~~~   86 (95)
T cd00098          35 LKNGKELTSGVTTTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHESL   86 (95)
T ss_pred             EECCEECCCceeccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCC
Confidence            467777764432 11 122333      355555566699999999999754

IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.

>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain

Probab=96.15  E-value=0.0066  Score=36.21  Aligned_cols=21  Identities=19%  Similarity=0.339  Sum_probs=19.5

Q ss_pred             EEEEcccCCCCCeeeEEEeEe
Q psy7035          22 SLVLQNVSRARAGHYTCVGSN   42 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N   42 (70)
                      +|+|.+++.+|+|.|.|.+..
T Consensus        77 ~L~I~~~~~~Dsa~YyCa~~~   97 (117)
T cd04981          77 YLQLNSLTPEDTAVYYCARGL   97 (117)
T ss_pred             EEEECCCCHHHCEEEEEEEEc
Confidence            699999999999999998875

IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.

>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=95.26  E-value=0.082  Score=29.81  Aligned_cols=45  Identities=7%  Similarity=-0.077  Sum_probs=28.2

Q ss_pred             cccCeEcCcCccceEEecC-------CEEEEcccCCCCCeeeEEEeEeCCCc
Q psy7035           2 SFSNVQLYNNISAGVIVSN-------QSLVLQNVSRARAGHYTCVGSNGEGD   46 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~~~~-------~tL~i~~v~~~D~G~Y~C~a~N~~G~   46 (70)
                      ++||+++...........+       .+|.|..-...|...|+|.+.|..-.
T Consensus        20 ~kng~~l~~~~~~~~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~~l~   71 (83)
T cd05884          20 FKNDKEIKDVKYLKEEDANRKTFTVSSTLDFRVDRSDDGVAIICRVDHESLN   71 (83)
T ss_pred             EECCEECcCceeeEeeCCCCCEEEEEEEEEEEcccccCCCEEEEEEechhcC
Confidence            5788887543222222211       25777766677788999999997544

Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.

>KOG3515|consensus

Probab=95.16  E-value=0.0087  Score=46.10  Aligned_cols=57  Identities=14%  Similarity=0.060  Sum_probs=46.9

Q ss_pred             cccCeEcCcCccceEEecCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeCCC
Q psy7035           2 SFSNVQLYNNISAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGLG   61 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~p~   61 (70)
                      +|.+..+.   .++..+.+.+|+.++..|..-+.|.|.|.|..|.....++.+.|.|+|-
T Consensus        43 ~h~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~c~a~ns~~~~~~~~~~l~v~~~pa   99 (741)
T KOG3515|consen   43 YHSTSGEH---GRYATIADPTLVTTGDVRDTVAELNCRAFNSVGMPSRCPMILDVDYPPA   99 (741)
T ss_pred             EecCcccc---cccccccCCceeeecchhhhhhhhhhhhcccccCceecceeeccccCcc
Confidence            44444433   3455667889999999999999999999999999989999999998874

>PHA03376 BARF1; Provisional

Probab=94.71  E-value=0.064  Score=35.85  Aligned_cols=23  Identities=30%  Similarity=0.489  Sum_probs=20.4

Q ss_pred             EEEEcccCCCCCeeeEEEeEeCC
Q psy7035          22 SLVLQNVSRARAGHYTCVGSNGE   44 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N~~   44 (70)
                      +|.|.+++-+|.|.|+|...-..
T Consensus        88 sLvI~~l~lSDdGtY~C~fQkge  110 (221)
T PHA03376         88 FLVVTAANISHDGNYLCRMKLGE  110 (221)
T ss_pred             EEEEEeeeecCCceEEEEEEcCC
Confidence            79999999999999999877643

>PHA03282 envelope glycoprotein E; Provisional

Probab=94.08  E-value=0.21  Score=37.15  Aligned_cols=44  Identities=20%  Similarity=0.178  Sum_probs=31.0

Q ss_pred             EEecCCEEEEcccCCCCCeeeEEEeEeCCCcc-cceeEEEEEEeC
Q psy7035          16 VIVSNQSLVLQNVSRARAGHYTCVGSNGEGDG-QSNAQKTAYDIG   59 (70)
Q Consensus        16 ~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~-~s~~~~L~V~~~   59 (70)
                      +...|++|.|.+++.+|+|.|+-.....-.++ ....+.|.|.-.
T Consensus       119 vs~~n~tl~l~~a~~~DsG~Y~L~~~~~~~~~~~~~~v~l~V~p~  163 (540)
T PHA03282        119 VAVVNGTLVLREARETDSGMYVLSVSRAPNSTAARAVVFLVVGPR  163 (540)
T ss_pred             eeEecceEEEeeccccCCceEEEEecCCCCchhheEEEEEEecCC
Confidence            44569999999999999999998764432222 233466777643

>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4)

Probab=93.51  E-value=0.085  Score=32.19  Aligned_cols=19  Identities=26%  Similarity=0.440  Sum_probs=17.9

Q ss_pred             EEEEcccCCCCCeeeEEEe
Q psy7035          22 SLVLQNVSRARAGHYTCVG   40 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a   40 (70)
                      +|.|++++.+|++.|.|.-
T Consensus        75 ~L~l~~L~a~DTa~Y~Ca~   93 (115)
T cd05721          75 NFTLQNLRANQTDIYFCKI   93 (115)
T ss_pred             EEEEcCCCHHHCeEEEEEe
Confidence            7999999999999999965

IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased

>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain

Probab=92.05  E-value=0.19  Score=27.80  Aligned_cols=22  Identities=23%  Similarity=0.449  Sum_probs=16.7

Q ss_pred             CEEEEcccCCCCCeeeEEEeEeC
Q psy7035          21 QSLVLQNVSRARAGHYTCVGSNG   43 (70)
Q Consensus        21 ~tL~i~~v~~~D~G~Y~C~a~N~   43 (70)
                      ..+.+.+-. ++.|.|+|.+.+.
T Consensus        35 ~~~~~~~~~-e~~G~Y~C~~~~~   56 (65)
T cd07692          35 EKYLSLNHF-SSSGYYHCTADNA   56 (65)
T ss_pred             ceEEeeccC-CCCceEEEEeCCC
Confidence            355566666 9999999999754

Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=91.62  E-value=0.31  Score=28.80  Aligned_cols=25  Identities=16%  Similarity=0.403  Sum_probs=18.8

Q ss_pred             CEEEEcccCCCCCe-eeEEEeEeCCCc
Q psy7035          21 QSLVLQNVSRARAG-HYTCVGSNGEGD   46 (70)
Q Consensus        21 ~tL~i~~v~~~D~G-~Y~C~a~N~~G~   46 (70)
                      .+|+|. ++++|-| .|+|.|.+..+.
T Consensus        62 stlt~~-~~r~D~g~~~sC~A~l~l~~   87 (100)
T cd05755          62 ATITIT-VDREDHGANFSCETELDLRP   87 (100)
T ss_pred             EEEEEe-cchhhCCcEEEEEEEeccCc
Confidence            467776 4566666 999999998765

Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.

>PHA03283 envelope glycoprotein E; Provisional

Probab=91.58  E-value=0.58  Score=35.17  Aligned_cols=44  Identities=18%  Similarity=0.052  Sum_probs=34.3

Q ss_pred             CCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeCCCCCC
Q psy7035          20 NQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGLGIPA   64 (70)
Q Consensus        20 ~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~p~~~~   64 (70)
                      .+-|.|.+++..++|.|+=..+|..+ ..-..+.|.|+-++..|+
T Consensus       133 ~~~l~I~~at~~~aGVYtly~r~d~~-~~~~vflvtVk~~~~~~~  176 (542)
T PHA03283        133 RSVLQIQRATPNIAGVYTLHVSSDGM-MKHSVFFVTVKKPPKQPQ  176 (542)
T ss_pred             CCeeEEEecccccCeEEEEEecCCCc-eEEEEEEEEecCCCcCCC
Confidence            35699999999999999999999877 444478888876444443

>smart00407 IGc1 Immunoglobulin C-Type

Probab=91.27  E-value=0.75  Score=24.98  Aligned_cols=23  Identities=17%  Similarity=0.304  Sum_probs=16.7

Q ss_pred             EEEEcccCCCCCeeeEEEeEeCC
Q psy7035          22 SLVLQNVSRARAGHYTCVGSNGE   44 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N~~   44 (70)
                      +|.|......+...|+|.+.+..
T Consensus        49 ~L~v~~~~~~~~~~~tC~V~H~~   71 (75)
T smart00407       49 YLTVSASTWESGDTYTCQVTHEG   71 (75)
T ss_pred             EEEEccccCCCCCEEEEEEEEcC
Confidence            45555556677789999998863

>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein

Probab=91.19  E-value=0.062  Score=39.20  Aligned_cols=41  Identities=17%  Similarity=0.148  Sum_probs=0.0

Q ss_pred             cCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeC
Q psy7035          19 SNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIG   59 (70)
Q Consensus        19 ~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~   59 (70)
                      .++.|.|.++++.|+|.|+=...|.-|......+.|.|.-.
T Consensus        87 ~~~~l~i~~a~~~~~GvY~l~~~~~~~~~~~~~~~v~v~~~  127 (439)
T PF02480_consen   87 NKGGLSILNATEQDSGVYTLYVRNDSGWAHQSVVFVTVKGP  127 (439)
T ss_dssp             -----------------------------------------
T ss_pred             cCCceEEeccccccCeeEEEEecCCCCceEEEEEEEEEcCC
Confidence            55789999999999999999999998888888888888753

gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.

>KOG3515|consensus

Probab=90.78  E-value=0.34  Score=37.63  Aligned_cols=58  Identities=17%  Similarity=0.056  Sum_probs=38.3

Q ss_pred             cCeEcCcCccc-eEEecCCE-EEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeCCCC
Q psy7035           4 SNVQLYNNISA-GVIVSNQS-LVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGLGI   62 (70)
Q Consensus         4 ng~~l~~~~~~-~~~~~~~t-L~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~p~~   62 (70)
                      ++-++.+..+. ..++.++- +-+.+|.+.|.|.|.|.|.|..|.+.- .+.+.+.+-|..
T Consensus       439 ~~~~~~~~~g~~~~v~~~~~~~s~~~v~~~d~g~y~~tatns~gg~~~-~~~~~~~~sp~~  498 (741)
T KOG3515|consen  439 RLYKLSQVDGGVVRVGAGAGLGSGVNVSRSDGGSYGLTATNSPGGAQA-YLLLGVHTSPHN  498 (741)
T ss_pred             cceecccccCceEEeeccccccccceeeeccCCcceeeeccCCCceee-EEeeccccCCcc
Confidence            34445443332 23334444 448899999999999999999997644 455677776643

>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4

Probab=90.68  E-value=1.1  Score=26.20  Aligned_cols=25  Identities=20%  Similarity=0.444  Sum_probs=21.8

Q ss_pred             cCCEEEEcccCCCCCeeeEEEeEeC
Q psy7035          19 SNQSLVLQNVSRARAGHYTCVGSNG   43 (70)
Q Consensus        19 ~~~tL~i~~v~~~D~G~Y~C~a~N~   43 (70)
                      ...+|.+.+++..|+|..+|..+-.
T Consensus        49 ~~ktL~~~qv~~qdSG~WtC~V~~~   73 (88)
T cd07694          49 DKKTLNLVQLGPNDSGTWDCIVSVN   73 (88)
T ss_pred             CccEEEeceeCcccCCEEEEEEEEC
Confidence            5569999999999999999988643

Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=90.45  E-value=2  Score=24.26  Aligned_cols=42  Identities=10%  Similarity=0.206  Sum_probs=25.9

Q ss_pred             eEEecCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEE
Q psy7035          15 GVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAY   56 (70)
Q Consensus        15 ~~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V   56 (70)
                      ..+-....+.....+..|+|..+|.|+...-......+.|.|
T Consensus        37 k~~~~~~~~~~~~~~~~d~G~w~C~a~~~~~k~~~s~~~i~v   78 (80)
T PF05790_consen   37 KSLETKKLVSTFTPTTEDSGTWVCTASDNEPKERESKIEILV   78 (80)
T ss_dssp             EEEEESSEEEEESBTCGGSEEEEEEEEECTTEEEEEEEEEEE
T ss_pred             cccccceEEEEecCCCCCCEEEEEEEcCCceEEEEEEEEEEc
Confidence            333344556777778999999999995332222333444444

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....

>KOG4597|consensus

Probab=89.44  E-value=0.42  Score=35.73  Aligned_cols=40  Identities=33%  Similarity=0.347  Sum_probs=31.7

Q ss_pred             cCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeC
Q psy7035          19 SNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIG   59 (70)
Q Consensus        19 ~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~   59 (70)
                      +-..|.|-+....|+|-|+|.|+|..|...- .+.+.+.-+
T Consensus       255 stcql~ic~ewq~~a~w~tCs~rcg~g~~~r-dv~c~s~~g  294 (560)
T KOG4597|consen  255 STCQLVICNEWQADAGWYTCSARCGAGFLRR-DVPCSSVKG  294 (560)
T ss_pred             eeeeEEEcchhhcCCCceeeccccccceeec-cceeeeecc
Confidence            3457999999999999999999999997544 355555544

>PHA02982 hypothetical protein; Provisional

Probab=89.24  E-value=1  Score=30.66  Aligned_cols=32  Identities=16%  Similarity=0.448  Sum_probs=27.2

Q ss_pred             ecCCEEEEcccCCCCCeeeEEEeEeCCCcccc
Q psy7035          18 VSNQSLVLQNVSRARAGHYTCVGSNGEGDGQS   49 (70)
Q Consensus        18 ~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s   49 (70)
                      ..+.||+|.++.-...|=|+|.|+...+..+.
T Consensus        97 g~~STLTIkk~~i~N~GCYtc~~ks~~~k~E~  128 (251)
T PHA02982         97 GNSSTFTMKKPDPQNLGCFTCEAKDAEGKEET  128 (251)
T ss_pred             ccceeEEeccCCcccCCceEEEEecCCCchhe
Confidence            46679999999999999999999997765443

>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ]

Probab=89.14  E-value=0.26  Score=30.68  Aligned_cols=33  Identities=27%  Similarity=0.496  Sum_probs=20.1

Q ss_pred             EEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEE
Q psy7035          22 SLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAY   56 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V   56 (70)
                      +|.|.... .=.|.|+|++.....+.+. .+.|.+
T Consensus        87 SL~~~~~~-a~~GnYTCeVt~~~~ege~-~i~Lk~  119 (130)
T PF08204_consen   87 SLKMDKSD-AVEGNYTCEVTELSREGET-TIELKY  119 (130)
T ss_dssp             -EEEEHHH-HH-EEEEEEEEETTEEEEE-EEEEEE
T ss_pred             EEEEcchh-ccccceEEEEEecCCCceE-EEEEEE
Confidence            57777743 3389999999986554322 445544

; PDB: 2VSC_B 2JJS_D 2JJT_C.

>PHA03286 envelope glycoprotein E; Provisional

Probab=88.50  E-value=1.5  Score=32.55  Aligned_cols=37  Identities=22%  Similarity=0.232  Sum_probs=33.6

Q ss_pred             CEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEE
Q psy7035          21 QSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYD   57 (70)
Q Consensus        21 ~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~   57 (70)
                      +-|.|.|++..++|.|+=..+|.-|....+.+.+.|.
T Consensus       127 ~~L~I~nAt~qnaGiYtly~rnd~~~~~~~vflVtV~  163 (492)
T PHA03286        127 KELTILNASSQNAGIYIRYSRNGTRTAVMDVLVVWVS  163 (492)
T ss_pred             CceEEeeccccccceEEEEEcCCCCcEEEEEEEEEEe
Confidence            5699999999999999999999988877778888986

>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins

Probab=86.60  E-value=0.94  Score=26.33  Aligned_cols=34  Identities=15%  Similarity=0.090  Sum_probs=22.7

Q ss_pred             EEEEcccCCCCCeeeEEEeEeCC-CcccceeEEEE
Q psy7035          22 SLVLQNVSRARAGHYTCVGSNGE-GDGQSNAQKTA   55 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N~~-G~~~s~~~~L~   55 (70)
                      +|.+..-...|.-.|+|.|+|.. .+..+.++.|.
T Consensus        60 ~l~~~P~~~d~Gk~ltC~v~h~al~~~~~~~~~l~   94 (95)
T cd07703          60 EYSLVPTPEANGKEVTCKVEHETLQEPQLLPVTLS   94 (95)
T ss_pred             EEEEecCHHHCCCEEEEEEeCcccCCCeEEEEEEe
Confidence            57776666777788999999973 33344444444

Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.

>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=86.59  E-value=1.1  Score=25.85  Aligned_cols=34  Identities=21%  Similarity=0.115  Sum_probs=22.4

Q ss_pred             EEEEcccCCCCCeeeEEEeEeCCC-cccceeEEEE
Q psy7035          22 SLVLQNVSRARAGHYTCVGSNGEG-DGQSNAQKTA   55 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N~~G-~~~s~~~~L~   55 (70)
                      +|.+..-...|.-.|+|.+.|..- .....++.|.
T Consensus        60 ~l~~~p~~~d~G~~~tC~v~h~~l~~~~~~~~~L~   94 (95)
T cd05719          60 EYRLVPSREANGKELTCVVSHPTLQEPQRFSVTLN   94 (95)
T ss_pred             EEEEecCHHHCCCEEEEEEeCcccCCCeEEEEEee
Confidence            566766666777789999999753 2333344444

Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus

>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin

Probab=85.51  E-value=1.9  Score=24.94  Aligned_cols=41  Identities=10%  Similarity=0.253  Sum_probs=23.1

Q ss_pred             cccCeEcCcCccc-eEEe-cCCEEEEc---ccCCCCCeeeEEEeEeC
Q psy7035           2 SFSNVQLYNNISA-GVIV-SNQSLVLQ---NVSRARAGHYTCVGSNG   43 (70)
Q Consensus         2 ~~ng~~l~~~~~~-~~~~-~~~tL~i~---~v~~~D~G~Y~C~a~N~   43 (70)
                      ++||+++. +... .... .+++..+.   .++..+...|+|.+...
T Consensus        37 ~~dg~~~~-~~~~~~~~p~~d~tyq~~s~l~~~~~~~~~ysC~V~H~   82 (93)
T cd05770          37 LKNGVKIP-KVEQSDLSFSKDWTFYLLKSTEFTPTKGDEYACRVRHN   82 (93)
T ss_pred             EECCEECC-CcEECcEEECCCCCEEEEEEEEECCCCCCeEEEEEEEC
Confidence            57888876 3221 1221 23332221   23567778899999984

IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.

>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain

Probab=84.99  E-value=4.9  Score=23.83  Aligned_cols=41  Identities=7%  Similarity=0.126  Sum_probs=23.1

Q ss_pred             cccCeEcCcCccceEEe-cC-------CEEEEcccCCCCCee-eEEEeEeCC
Q psy7035           2 SFSNVQLYNNISAGVIV-SN-------QSLVLQNVSRARAGH-YTCVGSNGE   44 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~~-~~-------~tL~i~~v~~~D~G~-Y~C~a~N~~   44 (70)
                      ++||+++..... .... .+       .+|.+. ..+.|.|. |+|.+.+..
T Consensus        43 ~kng~~~~~~~~-~~~p~~d~~ty~~~S~L~~~-~~~~d~~~~ytC~V~H~~   92 (111)
T cd05772          43 LKNGNELSAEQP-NITPEGDSVSYNVTSTVQVK-LTEDDVHSQVTCEVQHRT   92 (111)
T ss_pred             EECCEECccccc-ceeeCCCCCcEEEEEEEEEE-CccccccCceEEEEEeCC
Confidence            578888754221 1111 12       134444 35566555 999999963

IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating

>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=83.19  E-value=2.4  Score=23.85  Aligned_cols=18  Identities=17%  Similarity=0.385  Sum_probs=14.0

Q ss_pred             ccCCCCCeeeEEEeEeCC
Q psy7035          27 NVSRARAGHYTCVGSNGE   44 (70)
Q Consensus        27 ~v~~~D~G~Y~C~a~N~~   44 (70)
                      .++..|.+.|+|.+.+..
T Consensus        66 ~v~~~~~~~ytC~V~H~~   83 (93)
T cd07698          66 EVPPEDKARYSCRVEHSG   83 (93)
T ss_pred             EECCCCCCEEEEEEEeCC
Confidence            345568899999999863

IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.

>PHA03042 CD47-like protein; Provisional

Probab=81.77  E-value=4.6  Score=28.24  Aligned_cols=25  Identities=28%  Similarity=0.348  Sum_probs=17.7

Q ss_pred             EEEEcccCCCCCeeeEEEeEeCCCcc
Q psy7035          22 SLVLQNVSRARAGHYTCVGSNGEGDG   47 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N~~G~~   47 (70)
                      +|.+... ++=.|+|+|+|.+..-+.
T Consensus        72 SL~~~f~-~~l~GNYTCEv~~l~n~g   96 (286)
T PHA03042         72 SLKFNFS-KNLSGNYTCEAINKFNKI   96 (286)
T ss_pred             EEEEecc-ccCCCceeEEEeecccCc
Confidence            3666554 566899999999864443

>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain

Probab=80.86  E-value=5.1  Score=23.24  Aligned_cols=10  Identities=10%  Similarity=0.527  Sum_probs=8.1

Q ss_pred             eeEEEeEeCC
Q psy7035          35 HYTCVGSNGE   44 (70)
Q Consensus        35 ~Y~C~a~N~~   44 (70)
                      .|+|.+....
T Consensus        76 ~ysC~V~H~g   85 (96)
T cd07697          76 KFRCIYKHEG   85 (96)
T ss_pred             eEEEEEEECC
Confidence            4999999853

IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.

>PHA02914 Immunoglobulin-like domain protein; Provisional

Probab=80.24  E-value=4.5  Score=29.98  Aligned_cols=36  Identities=14%  Similarity=0.355  Sum_probs=24.5

Q ss_pred             EEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEE
Q psy7035          22 SLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYD   57 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~   57 (70)
                      +..+.|++++|.|.|.|.-.-.-.+..--.+.+.|.
T Consensus        82 sf~~~Nvs~sdEGrYrCIFYLn~~EtyrH~I~vrVm  117 (500)
T PHA02914         82 SFIEENIGEHEDGDFKCIFYLGDNESHKHEILVRKA  117 (500)
T ss_pred             EEEecCcccccCCcEEEEEEeCCceeEEEEEEEEEc
Confidence            577888999999999997765433333334555543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	70
1nn8_R	302	CD155 antigen, poliovirus receptor; icosahedral vi	4e-07
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	3e-06
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	3e-06
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	5e-06
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	5e-06
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	7e-04
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	1e-05
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	1e-05
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	5e-05
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	1e-05
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	1e-05
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	6e-04
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	2e-05
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	2e-05
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	6e-05
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	1e-04
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	2e-04
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	5e-04
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	6e-04
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	3e-05
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	6e-04
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	3e-05
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	3e-05
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	3e-05
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	3e-05
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	9e-04
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	3e-05
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	6e-05
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	9e-05
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	4e-05
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	5e-04
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	4e-05
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	5e-05
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	5e-05
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	5e-05
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	7e-05
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	5e-05
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	6e-05
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	1e-04
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	2e-04
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	3e-04
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	6e-05
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	6e-05
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	6e-05
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	9e-05
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	9e-05
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	9e-05
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	1e-04
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	1e-04
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	1e-04
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	1e-04
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	3e-04
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	7e-04
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	1e-04
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	1e-04
2ens_A	96	Advanced glycosylation END product-specific recept	1e-04
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	1e-04
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	1e-04
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	1e-04
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	2e-04
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	2e-04
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	3e-04
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	2e-04
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	2e-04
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	8e-04
1gsm_A	210	Madcam-1, mucosal addressin cell adhesion molecule	2e-04
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	2e-04
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	2e-04
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	2e-04
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	2e-04
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	3e-04
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	3e-04
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	4e-04
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	4e-04
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	4e-04
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	5e-04
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	5e-04
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	6e-04
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	6e-04
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	6e-04
1he7_A	126	High affinity nerve growth factor receptor; transf	7e-04
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	7e-04
2ch8_A	201	BARF1, P33, 33 kDa early protein; viral protein, i	8e-04
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	8e-04
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	8e-04
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	9e-04
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	9e-04

>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302

 Score = 44.3 bits (104), Expect = 4e-07
 Identities = 6/41 (14%), Positives = 14/41 (34%)

Query: 12  ISAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQ 52
           +    +     L+++ V +       C  +N  G  Q+   
Sbjct: 259 LPPFAVAQGAQLLIRPVDKPINTTLICNVTNALGARQAELT 299

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A Length = 170

 Score = 41.0 bits (96), Expect = 3e-06
 Identities = 8/42 (19%), Positives = 15/42 (35%)

Query: 10  NNISAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNA 51
           N  S      + +  +   + + +G Y C G+ G     S  
Sbjct: 123 NGKSQKFSHLDPTFSIPQANHSHSGDYHCTGNIGYTLFSSKP 164

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* Length = 176

 Score = 41.0 bits (96), Expect = 3e-06
 Identities = 8/42 (19%), Positives = 17/42 (40%)

Query: 10  NNISAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNA 51
           +  +      N ++ + N +   +G Y C G   + D +S  
Sbjct: 123 DGEALKYWYENHNISITNATVEDSGTYYCTGKVWQLDYESEP 164

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score = 41.0 bits (96), Expect = 5e-06
 Identities = 8/37 (21%), Positives = 16/37 (43%)

Query: 16  VIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQ 52
             V+  +++ ++   +    Y C  SN  G   +NA 
Sbjct: 362 REVAGDTIIFRDTQISSRAVYQCNTSNEHGYLLANAF 398

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score = 41.0 bits (96), Expect = 5e-06
 Identities = 14/36 (38%), Positives = 20/36 (55%)

Query: 17  IVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQ 52
           IV   +L +  V ++  G Y CV  N  G+ QS+AQ
Sbjct: 361 IVGGSNLRILGVVKSDEGFYQCVAENEAGNAQSSAQ 396

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score = 34.8 bits (80), Expect = 7e-04
 Identities = 9/37 (24%), Positives = 21/37 (56%)

Query: 16  VIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQ 52
            ++   +L++ NV+   +G YTCV +    +  ++A+
Sbjct: 270 SLLGGSNLLISNVTDDDSGTYTCVVTYKNENISASAE 306

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} Length = 250

 Score = 39.9 bits (92), Expect = 1e-05
 Identities = 8/38 (21%), Positives = 17/38 (44%)

Query: 17  IVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKT 54
               ++LV++      AG   C  + G+G+  ++   T
Sbjct: 209 FSGARNLVIRAAKITDAGRVWCELATGQGELDADRSST 246

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212

 Score = 39.6 bits (92), Expect = 1e-05
 Identities = 12/50 (24%), Positives = 19/50 (38%)

Query: 3  FSNVQLYNNISAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQ 52
            N Q+    +  V  S+  +   +V+R   G YTC+ S   G       
Sbjct: 47 CYNSQITAPYADRVTFSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVS 96

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212

 Score = 38.0 bits (88), Expect = 5e-05
 Identities = 10/48 (20%), Positives = 18/48 (37%)

Query: 5   NVQLYNNISAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQ 52
             + + N S  +   +  L+   V+   +G Y C   NG G    +  
Sbjct: 153 KTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEA 200

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4 Length = 98

 Score = 38.2 bits (89), Expect = 1e-05
 Identities = 13/41 (31%), Positives = 19/41 (46%)

Query: 12 ISAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQ 52
          + +  +  N  L ++NV  + AG Y C GSN     Q  A 
Sbjct: 53 LPSRAMDFNGILTIRNVQPSDAGTYVCTGSNMFAMDQGTAT 93

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score = 39.6 bits (92), Expect = 1e-05
 Identities = 12/34 (35%), Positives = 16/34 (47%)

Query: 19  SNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQ 52
             + L L NV+   AG YTC+  N  G    +A 
Sbjct: 289 ELEVLSLHNVTFEDAGEYTCLAGNSIGFSHHSAW 322

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score = 35.0 bits (80), Expect = 6e-04
 Identities = 9/39 (23%), Positives = 16/39 (41%)

Query: 16 VIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKT 54
          V+V  Q L + N S   +G Y+C     +      + + 
Sbjct: 56 VLVGPQRLQVLNASHEDSGAYSCRQRLTQRVLCHFSVRV 94

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231

 Score = 39.5 bits (92), Expect = 2e-05
 Identities = 13/36 (36%), Positives = 17/36 (47%)

Query: 17  IVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQ 52
             + + L L NV+ A AG Y C  SN  G    +A 
Sbjct: 181 SSNAEVLALFNVTEADAGEYICKVSNYIGQANQSAW 216

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 39.6 bits (92), Expect = 2e-05
 Identities = 12/48 (25%), Positives = 20/48 (41%)

Query: 3   FSNVQLYNNISAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSN 50
            +   L  +    +   N++L L NV+R  A  Y C   N     +S+
Sbjct: 502 VNGQSLPVSPRLQLSNGNRTLTLFNVTRNDARAYVCGIQNSVSANRSD 549

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 38.0 bits (88), Expect = 6e-05
 Identities = 10/39 (25%), Positives = 16/39 (41%)

Query: 16  VIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKT 54
           +    Q L + N++   +G YTC  +N          KT
Sbjct: 421 IQQHTQELFISNITEKNSGLYTCQANNSASGHSRTTVKT 459

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 37.2 bits (86), Expect = 1e-04
 Identities = 12/49 (24%), Positives = 19/49 (38%)

Query: 5   NVQLYNNISAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQK 53
           N  L  +    +   N++L L +V+R   G Y C   N      S+   
Sbjct: 326 NQSLPVSPRLQLSNDNRTLTLLSVTRNDVGPYECGIQNELSVDHSDPVI 374

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 36.5 bits (84), Expect = 2e-04
 Identities = 8/38 (21%), Positives = 14/38 (36%)

Query: 17  IVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKT 54
               Q L +  ++    G Y C  SN      ++  K+
Sbjct: 600 QQHTQVLFIAKITPNNNGTYACFVSNLATGRNNSIVKS 637

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 35.3 bits (81), Expect = 5e-04
 Identities = 10/32 (31%), Positives = 15/32 (46%)

Query: 19  SNQSLVLQNVSRARAGHYTCVGSNGEGDGQSN 50
            N++L L NV+R     Y C   N     +S+
Sbjct: 162 GNRTLTLFNVTRNDTASYKCETQNPVSARRSD 193

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 34.9 bits (80), Expect = 6e-04
 Identities = 10/39 (25%), Positives = 15/39 (38%)

Query: 16  VIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKT 54
              S Q L + N++   +G YTC   N +         T
Sbjct: 243 FQQSTQELFIPNITVNNSGSYTCQAHNSDTGLNRTTVTT 281

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score = 38.7 bits (90), Expect = 3e-05
 Identities = 10/37 (27%), Positives = 16/37 (43%)

Query: 16  VIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQ 52
             V++  LV++ V     G+Y C  +N  GD      
Sbjct: 355 ATVTDSGLVIKGVKNGDKGYYGCRATNEHGDKYFETL 391

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score = 34.9 bits (80), Expect = 6e-04
 Identities = 11/40 (27%), Positives = 17/40 (42%)

Query: 12  ISAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNA 51
           I+     S + L+ +       G YTC   NG G  Q ++
Sbjct: 261 ITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHS 300

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C* Length = 175

 Score = 38.3 bits (89), Expect = 3e-05
 Identities = 9/49 (18%), Positives = 13/49 (26%), Gaps = 1/49 (2%)

Query: 4   SNVQLY-NNISAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNA 51
             V    N         N    +   +   +G Y C G  G  +  S  
Sbjct: 119 HKVTYLQNGKDRKYFHHNSDFHIPKATLKDSGSYFCRGLVGSKNVSSET 167

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens} Length = 91

 Score = 37.3 bits (87), Expect = 3e-05
 Identities = 6/33 (18%), Positives = 10/33 (30%)

Query: 19 SNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNA 51
          + +  ++  V     G Y C   N      S  
Sbjct: 48 TKKLYMVPYVDLEHQGTYWCHVYNDRDSQDSKK 80

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212

 Score = 38.6 bits (90), Expect = 3e-05
 Identities = 10/36 (27%), Positives = 14/36 (38%)

Query: 16  VIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNA 51
             + +  L ++N      G Y CV  N  G   S A
Sbjct: 158 YSLKDGFLQIENSREEDQGKYECVAENSMGTEHSKA 193

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241

 Score = 38.4 bits (89), Expect = 3e-05
 Identities = 10/36 (27%), Positives = 15/36 (41%)

Query: 17  IVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQ 52
           + ++  L L NVS    G Y C  +N  G  +    
Sbjct: 178 VEADVRLRLANVSERDGGEYLCRATNFIGVAEKAFW 213

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241

 Score = 34.5 bits (79), Expect = 9e-04
 Identities = 11/37 (29%), Positives = 18/37 (48%)

Query: 16  VIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQ 52
           +     SLV+++V  +  G+YTCV  N  G  +    
Sbjct: 67  LRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYT 103

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 38.4 bits (89), Expect = 3e-05
 Identities = 8/37 (21%), Positives = 17/37 (45%)

Query: 16  VIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQ 52
           +  S   L +++V +   G Y C   N     +++A+
Sbjct: 384 IGHSESVLRIESVKKEDKGMYQCFVRNDRESAEASAE 420

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 38.0 bits (88), Expect = 6e-05
 Identities = 10/37 (27%), Positives = 15/37 (40%)

Query: 16  VIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQ 52
           V      L ++ V  + AG++TC   N  G  Q    
Sbjct: 672 VGRRGSVLTIEAVEASHAGNFTCHARNLAGHQQFTTP 708

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 37.2 bits (86), Expect = 9e-05
 Identities = 12/39 (30%), Positives = 18/39 (46%)

Query: 13  SAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNA 51
           S  + V   +L + N+ +   G+Y C   NG G G S  
Sbjct: 765 SDNIRVEEGTLHVDNIQKTNEGYYLCEAINGIGSGLSAV 803

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score = 38.3 bits (89), Expect = 4e-05
 Identities = 10/37 (27%), Positives = 16/37 (43%)

Query: 16  VIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQ 52
           + VS   L    +    +G Y CV  N  G   ++A+
Sbjct: 341 IEVSGGELRFSKLVLEDSGMYQCVAENKHGTVYASAE 377

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score = 35.2 bits (81), Expect = 5e-04
 Identities = 10/42 (23%), Positives = 17/42 (40%)

Query: 11  NISAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQ 52
           + ++  + S   L +QNV     G Y C   N +G      +
Sbjct: 247 SQTSKWLSSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGR 288

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C* Length = 204

 Score = 37.9 bits (88), Expect = 4e-05
 Identities = 9/49 (18%), Positives = 13/49 (26%), Gaps = 1/49 (2%)

Query: 4   SNVQLY-NNISAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNA 51
             V    N         N    +   +   +G Y C G  G  +  S  
Sbjct: 119 HKVTYLQNGKGRKYFHHNSDFYIPKATLKDSGSYFCRGLVGSKNVSSET 167

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score = 38.3 bits (89), Expect = 5e-05
 Identities = 11/37 (29%), Positives = 19/37 (51%)

Query: 16  VIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQ 52
           + +   +L +  V+ + AG Y CV  N  G   S+A+
Sbjct: 342 IQIEQGTLNITIVNLSDAGMYQCVAENKHGVIFSSAE 378

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201

 Score = 37.9 bits (88), Expect = 5e-05
 Identities = 10/40 (25%), Positives = 16/40 (40%)

Query: 13  SAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQ 52
           +A +  S   L + N+     G Y C   N  G  +  A+
Sbjct: 157 TAEISTSGAVLKIFNIQLEDEGIYECEAENIRGKDKHQAR 196

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209

 Score = 38.0 bits (88), Expect = 5e-05
 Identities = 11/48 (22%), Positives = 22/48 (45%)

Query: 5   NVQLYNNISAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQ 52
           + + ++N S  +  +   LV   +S +  G Y+C   NG G   ++  
Sbjct: 155 STRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNA 202

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209

 Score = 37.6 bits (87), Expect = 7e-05
 Identities = 9/37 (24%), Positives = 16/37 (43%)

Query: 16 VIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQ 52
          V      +  ++V+R   G YTC+ S   G+     +
Sbjct: 63 VTFLPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVK 99

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339

 Score = 38.1 bits (88), Expect = 5e-05
 Identities = 9/41 (21%), Positives = 18/41 (43%)

Query: 16  VIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAY 56
            +     L++ +V+   AG+Y CV +      Q N  ++  
Sbjct: 175 SVRGTTHLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIE 215

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 37.8 bits (87), Expect = 6e-05
 Identities = 8/35 (22%), Positives = 15/35 (42%)

Query: 17  IVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNA 51
           I +   L +  VS    G+YT + +N     + + 
Sbjct: 377 IKAGHVLTIMEVSERDTGNYTVILTNPISKEKQSH 411

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 36.7 bits (84), Expect = 1e-04
 Identities = 7/52 (13%), Positives = 16/52 (30%), Gaps = 3/52 (5%)

Query: 19  SNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGLGIPAEPLFRS 70
               + L+N S    G Y C+  + +   +    +    + +     P    
Sbjct: 623 DILIMELKNASLQDQGDYVCLAQDRKTKKRHCVVR---QLTVLERVAPTITG 671

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 36.7 bits (84), Expect = 2e-04
 Identities = 6/50 (12%), Positives = 15/50 (30%)

Query: 3   FSNVQLYNNISAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQ 52
           +   +   + +     S +   + +   + AG   C     +   QS   
Sbjct: 165 YPEKRFVPDGNRISWDSKKGFTIPSYMISYAGMVFCEAKINDESYQSIMY 214

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 35.9 bits (82), Expect = 3e-04
 Identities = 9/34 (26%), Positives = 16/34 (47%)

Query: 19  SNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQ 52
            N++L ++ V +   G YTC   +  G  +  A 
Sbjct: 718 GNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAF 751

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192

 Score = 37.8 bits (88), Expect = 6e-05
 Identities = 12/35 (34%), Positives = 17/35 (48%)

Query: 17  IVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNA 51
           ++ + SL + NV +  AG Y CV  N  G   S  
Sbjct: 149 VLESGSLRIHNVQKEDAGQYRCVAKNSLGTAYSKL 183

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score = 37.8 bits (87), Expect = 6e-05
 Identities = 9/41 (21%), Positives = 14/41 (34%)

Query: 16  VIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAY 56
                  L++ NV+    G+YTC  S      Q    +   
Sbjct: 157 FSGVKDRLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIE 197

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184

 Score = 37.6 bits (87), Expect = 6e-05
 Identities = 5/37 (13%), Positives = 13/37 (35%)

Query: 16  VIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQ 52
            I   ++L +  +    +G +TC     +   +    
Sbjct: 138 NIQGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKID 174

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X Length = 122

 Score = 36.6 bits (84), Expect = 9e-05
 Identities = 11/57 (19%), Positives = 23/57 (40%)

Query: 1   MSFSNVQLYNNISAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYD 57
               N  L     + +     +L +  V+R+  G YTC  S+G    +++     ++
Sbjct: 54  KKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHE 110

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214

 Score = 37.4 bits (86), Expect = 9e-05
 Identities = 8/42 (19%), Positives = 17/42 (40%)

Query: 11  NISAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQ 52
                  +++  + ++N S   +G Y+C   N  G  Q   +
Sbjct: 166 PTPWLAEMTSPVISVKNASSEYSGTYSCTVQNRVGSDQCMLR 207

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331

 Score = 37.4 bits (86), Expect = 9e-05
 Identities = 10/43 (23%), Positives = 20/43 (46%), Gaps = 1/43 (2%)

Query: 11  NISAGVIVSNQSLVLQN-VSRARAGHYTCVGSNGEGDGQSNAQ 52
           ++  GV   N++L  +  ++ + AG Y C  +N  G      +
Sbjct: 273 SLPKGVEAQNRTLFFKGPINYSLAGTYICEATNPIGTRSGQVE 315

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363

 Score = 37.5 bits (86), Expect = 1e-04
 Identities = 5/37 (13%), Positives = 13/37 (35%)

Query: 16  VIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQ 52
            I   ++L +  +    +G +TC     +   +    
Sbjct: 137 NIQGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKID 173

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212

 Score = 37.1 bits (86), Expect = 1e-04
 Identities = 10/36 (27%), Positives = 19/36 (52%)

Query: 16  VIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNA 51
           + +    L++    ++ AG Y CVG+N  G+ +S  
Sbjct: 160 ITIRGGKLMITYTRKSDAGKYVCVGTNMVGERESEV 195

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A* Length = 268

 Score = 37.2 bits (85), Expect = 1e-04
 Identities = 9/42 (21%), Positives = 20/42 (47%)

Query: 11  NISAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQ 52
           +++  +  ++ S+ LQ V  +  G YTC    G+ + +    
Sbjct: 191 DLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTIV 232

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 37.1 bits (86), Expect = 1e-04
 Identities = 10/33 (30%), Positives = 12/33 (36%)

Query: 20  NQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQ 52
             S+ + NV  A  G Y C  SN  G       
Sbjct: 439 LTSIHILNVDSADIGEYQCKASNDVGSDTCVGS 471

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 35.5 bits (82), Expect = 3e-04
 Identities = 12/34 (35%), Positives = 18/34 (52%)

Query: 19  SNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQ 52
           +  +L +  V++  AG YTC  SN  G    +AQ
Sbjct: 251 NTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQ 284

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 34.8 bits (80), Expect = 7e-04
 Identities = 11/43 (25%), Positives = 17/43 (39%)

Query: 10  NNISAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQ 52
           +      + S   L + N+S   +G YTC   N  G   S+  
Sbjct: 336 SKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTS 378

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96

 Score = 35.8 bits (83), Expect = 1e-04
 Identities = 7/33 (21%), Positives = 14/33 (42%)

Query: 19 SNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNA 51
           +  L+L  +     G Y+CV ++     Q + 
Sbjct: 55 PSPVLILPEIGPQDQGTYSCVATHSSHGPQESR 87

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score = 36.8 bits (85), Expect = 1e-04
 Identities = 8/34 (23%), Positives = 16/34 (47%)

Query: 19  SNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQ 52
           S   L +++V +   G Y C   N     +++A+
Sbjct: 351 SESVLRIESVKKEDKGMYQCFVRNDRESAEASAE 384

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score = 36.8 bits (85), Expect = 1e-04
 Identities = 12/47 (25%), Positives = 19/47 (40%)

Query: 6   VQLYNNISAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQ 52
           + L ++         ++L L  V    AG Y+CV SN  G   +   
Sbjct: 230 IPLNSDFQDNYYKKVRALSLNAVDFQDAGIYSCVASNDVGTRTATMN 276

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score = 36.8 bits (85), Expect = 1e-04
 Identities = 7/37 (18%), Positives = 15/37 (40%)

Query: 16  VIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQ 52
           +++SN  L ++ + +   G Y C G        +   
Sbjct: 150 IVLSNNYLQIRGIKKTDEGTYRCEGRILARGEINFKD 186

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217

 Score = 36.4 bits (84), Expect = 2e-04
 Identities = 11/36 (30%), Positives = 18/36 (50%)

Query: 16  VIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNA 51
            IV   +L++ NV     G+Y C+  N  G  +S+ 
Sbjct: 165 RIVDGGNLLISNVEPIDEGNYKCIAQNLVGTRESSY 200

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* Length = 208

 Score = 36.6 bits (84), Expect = 2e-04
 Identities = 11/32 (34%), Positives = 15/32 (46%)

Query: 19  SNQSLVLQNVSRARAGHYTCVGSNGEGDGQSN 50
           +N  L +  + R  AG Y C  SN     +SN
Sbjct: 161 NNSILRIDPIKREDAGEYQCEISNPVSVRRSN 192

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* Length = 208

 Score = 35.8 bits (82), Expect = 3e-04
 Identities = 9/35 (25%), Positives = 15/35 (42%)

Query: 16  VIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSN 50
           +I SN SL+ Q ++    G YT   ++        
Sbjct: 66  IIYSNGSLLFQMITMKDMGVYTLDMTDENYRRTQA 100

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389

 Score = 36.3 bits (84), Expect = 2e-04
 Identities = 10/52 (19%), Positives = 21/52 (40%)

Query: 1  MSFSNVQLYNNISAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQ 52
           +  +  L   I       + SL +++V  + +G Y C  ++  G  Q +  
Sbjct: 43 FTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMY 94

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191

 Score = 36.3 bits (84), Expect = 2e-04
 Identities = 7/37 (18%), Positives = 15/37 (40%)

Query: 16  VIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQ 52
           +++SN  L ++ + +   G Y C G        +   
Sbjct: 150 IVLSNNYLQIRGIKKTDEGTYRCEGRILARGEINFKD 186

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191

 Score = 34.4 bits (79), Expect = 8e-04
 Identities = 8/31 (25%), Positives = 14/31 (45%)

Query: 19 SNQSLVLQNVSRARAGHYTCVGSNGEGDGQS 49
           + +L + N +   AG Y CV +  +G    
Sbjct: 60 DSSTLTIYNANIDDAGIYKCVVTAEDGTQSE 90

>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A* Length = 210

 Score = 36.4 bits (83), Expect = 2e-04
 Identities = 14/47 (29%), Positives = 18/47 (38%)

Query: 20  NQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGLGIPAEP 66
              L ++N S + AG   CVGS G    Q   Q   Y     +   P
Sbjct: 58  RSVLTVRNASLSAAGTRVCVGSCGGRTFQHTVQLLVYAFPNQLTVSP 104

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score = 36.3 bits (84), Expect = 2e-04
 Identities = 10/37 (27%), Positives = 18/37 (48%)

Query: 16  VIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQ 52
           +  SN  L ++N+  +  G Y C  +N  G+ +  A 
Sbjct: 243 LKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAF 279

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus} Length = 95

 Score = 35.2 bits (81), Expect = 2e-04
 Identities = 8/40 (20%), Positives = 18/40 (45%)

Query: 13 SAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQ 52
          S    ++ + + +++   A +G Y CV S+  G   +   
Sbjct: 52 SNRTRITGEEVEVRDSIPADSGLYACVTSSPSGSDTTYFS 91

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score = 35.1 bits (81), Expect = 2e-04
 Identities = 9/40 (22%), Positives = 18/40 (45%)

Query: 13 SAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQ 52
          S    ++ + + +Q+   A +G Y CV S+  G   +   
Sbjct: 46 SNRTRITGEEVEVQDSVPADSGLYACVTSSPSGSDTTYFS 85

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189

 Score = 35.9 bits (83), Expect = 2e-04
 Identities = 10/37 (27%), Positives = 18/37 (48%)

Query: 16  VIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQ 52
           +  SN  L ++N+  +  G Y C  +N  G+ +  A 
Sbjct: 147 LKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAF 183

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 35.1 bits (81), Expect = 3e-04
 Identities = 9/37 (24%), Positives = 15/37 (40%)

Query: 16 VIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQ 52
            + N  L ++       G YTC+ S   G+   +A 
Sbjct: 57 KQLENGVLQIRYAKLGDTGRYTCIASTPSGEATWSAY 93

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195

 Score = 35.6 bits (82), Expect = 3e-04
 Identities = 6/34 (17%), Positives = 12/34 (35%)

Query: 16 VIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQS 49
            +    L + ++  +  G Y C+   G     S
Sbjct: 63 DWIVVSQLRITSLQLSDTGQYQCLVFLGHQTFVS 96

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 35.8 bits (82), Expect = 4e-04
 Identities = 8/42 (19%), Positives = 14/42 (33%)

Query: 11  NISAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQ 52
           + +   I     L L  +     G YT + SN + +      
Sbjct: 365 SENESNIRYVSELHLTRLKGTEGGTYTFLVSNSDVNAAIAFN 406

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 35.4 bits (81), Expect = 4e-04
 Identities = 7/29 (24%), Positives = 13/29 (44%)

Query: 17  IVSNQSLVLQNVSRARAGHYTCVGSNGEG 45
           ++      + +V+R   G+YTC  S    
Sbjct: 286 MIRILFAFVSSVARNDTGYYTCSSSKHPS 314

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score = 35.4 bits (81), Expect = 5e-04
 Identities = 7/34 (20%), Positives = 15/34 (44%)

Query: 19  SNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQ 52
              +L++   S+  AG Y  +  +  G  +S  +
Sbjct: 274 GICTLLITEFSKKDAGIYEVILKDDRGKDKSRLK 307

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182

 Score = 34.8 bits (80), Expect = 5e-04
 Identities = 10/28 (35%), Positives = 14/28 (50%)

Query: 22 SLVLQNVSRARAGHYTCVGSNGEGDGQS 49
           L L++V R+ AG Y C   +G     S
Sbjct: 61 FLSLKSVERSDAGRYWCQVEDGGETEIS 88

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score = 35.1 bits (81), Expect = 6e-04
 Identities = 12/34 (35%), Positives = 18/34 (52%)

Query: 19 SNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQ 52
          +  +L +  V++  AG YTC  SN  G    +AQ
Sbjct: 59 NTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQ 92

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R* Length = 213

 Score = 35.2 bits (80), Expect = 6e-04
 Identities = 9/35 (25%), Positives = 17/35 (48%)

Query: 18  VSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQ 52
               +L +  V+R+  G YTC  S+G    +++  
Sbjct: 168 KFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTF 202

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329

 Score = 35.2 bits (80), Expect = 6e-04
 Identities = 7/39 (17%), Positives = 16/39 (41%)

Query: 16  VIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKT 54
              S Q+L++ N     +G Y C     +   +++   +
Sbjct: 177 YSQSGQNLIIHNPELEDSGRYDCYVHYDDVRIKNDIVVS 215

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X Length = 126

 Score = 34.1 bits (78), Expect = 7e-04
 Identities = 12/58 (20%), Positives = 21/58 (36%), Gaps = 4/58 (6%)

Query: 9   YNNISAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGLGIPAEP 66
           +   +A   V +  L L   +    G+YT + +N  G     A  +     +  P E 
Sbjct: 51  FLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFG----QASASIMAAFMDNPFEF 104

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194

 Score = 34.7 bits (80), Expect = 7e-04
 Identities = 8/33 (24%), Positives = 14/33 (42%)

Query: 20  NQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQ 52
             SL++       +G Y+   +N  G   S A+
Sbjct: 158 LYSLLIAEAYPEDSGTYSVNATNSVGRATSTAE 190

>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201

 Score = 34.6 bits (79), Expect = 8e-04
 Identities = 7/34 (20%), Positives = 13/34 (38%)

Query: 19 SNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQ 52
          +   LV+   + +  G+Y C    GE +      
Sbjct: 65 NTFFLVVTAANISHDGNYLCRMKLGETEVTKQEH 98

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} Length = 108

 Score = 33.8 bits (78), Expect = 8e-04
 Identities = 9/34 (26%), Positives = 16/34 (47%)

Query: 19 SNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQ 52
           N++L ++ V +   G YTC   +  G  +  A 
Sbjct: 62 GNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAF 95

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score = 34.6 bits (79), Expect = 8e-04
 Identities = 11/42 (26%), Positives = 18/42 (42%)

Query: 11  NISAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQ 52
           +          +L L  V    AG+Y+CV SN +G   ++  
Sbjct: 235 DFHNNRYQKVLTLNLDQVDFQHAGNYSCVASNVQGKHSTSMF 276

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305

 Score = 34.3 bits (79), Expect = 9e-04
 Identities = 7/33 (21%), Positives = 12/33 (36%)

Query: 20 NQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQ 52
             L++ +V+   A  Y    +N  G     A 
Sbjct: 61 YHQLIIASVTDDDATVYQVRATNQGGSVSGTAS 93

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218

 Score = 34.5 bits (79), Expect = 9e-04
 Identities = 6/33 (18%), Positives = 10/33 (30%)

Query: 19  SNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNA 51
           + +  ++  V     G Y C   N      S  
Sbjct: 163 TKKLYMVPYVDLEHQGTYWCHVYNDRDSQDSKK 195

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	70
3knb_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, AT	99.47
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	99.46
1he7_A	126	High affinity nerve growth factor receptor; transf	99.43
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	99.41
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	99.41
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	99.4
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	99.38
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	99.38
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	99.38
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	99.37
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	99.37
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	99.37
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	99.35
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	99.34
3knb_A	100	Titin; IG-like, titin, OBSL1, ATP-binding, calmodu	99.33
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	99.32
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	99.31
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	99.31
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	99.31
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	99.29
4hwu_A	95	Fibroblast growth factor receptor 2; FGFR2, KGFR,	99.29
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	99.28
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	99.28
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	99.27
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	99.27
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	99.27
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	99.26
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	99.26
2lu7_A	84	Obscurin-like protein 1; structural genomics, nort	99.26
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	99.25
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	99.25
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	99.25
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	99.24
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	99.24
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	99.24
2qsq_A	111	Carcinoembryonic antigen-related cell adhesion MO;	99.23
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	99.22
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	99.21
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	99.21
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	99.21
4fqp_A	313	Poliovirus receptor; immunoglobulin-like domain, I	99.21
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	99.2
3so5_A	112	LIG-3, leucine-rich repeats and immunoglobulin-lik	99.2
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	99.19
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	99.19
2lvc_A	91	Obscurin-like protein 1; structural genomics, nort	99.19
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	99.18
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	99.16
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	99.15
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	99.15
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	99.14
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	99.13
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	99.13
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	99.13
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	99.13
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	99.13
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	99.12
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	99.11
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	99.11
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	99.11
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	99.11
2eo1_A	102	OBSCN protein, cDNA FLJ14124 FIS, clone mamma10024	99.1
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	99.1
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	99.1
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	99.1
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	99.1
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	99.1
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	99.09
3m45_A	108	Cell adhesion molecule 2; IG fold, dimer, disulfid	99.09
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	99.09
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	99.09
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	99.09
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	99.08
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	99.07
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	99.07
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	99.06
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	99.06
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	99.05
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.05
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	99.05
2dm7_A	108	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	99.05
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	99.05
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	99.05
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	99.05
2ens_A	96	Advanced glycosylation END product-specific recept	99.04
2dku_A	103	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	99.04
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	99.04
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	99.03
4fom_A	308	Poliovirus receptor-related protein 3; immunoglobu	99.03
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	99.02
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	99.02
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	99.02
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	99.02
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	99.01
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	99.01
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	99.01
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	99.0
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	99.0
1ugn_A	198	LIR1, leukocyte immunoglobulin-like receptor 1; im	99.0
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	99.0
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	99.0
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	99.0
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	99.0
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	98.99
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	98.99
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	98.98
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	98.98
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	98.97
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	98.97
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	98.97
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	98.97
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	98.97
2gi7_A	184	GPVI protein; IG-like domains, blood clotting, cel	98.97
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	98.96
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	98.96
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	98.96
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	98.96
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	98.95
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	98.95
1z9m_A	145	GAPA225; nectin-like, IG-like domain, V domain, ce	98.95
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	98.95
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	98.95
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	98.95
2d3v_A	196	Leukocyte immunoglobulin-like receptor subfamily A	98.94
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	98.94
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	98.94
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	98.94
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	98.94
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.94
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	98.94
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	98.94
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	98.94
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	98.93
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	98.93
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	98.93
1ugn_A	198	LIR1, leukocyte immunoglobulin-like receptor 1; im	98.93
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	98.93
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	98.93
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	98.92
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	98.92
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	98.92
2edo_A	121	CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte	98.92
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	98.92
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	98.92
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	98.92
2d3v_A	196	Leukocyte immunoglobulin-like receptor subfamily A	98.92
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	98.92
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	98.91
1oll_A	188	NK receptor; immune system/receptor, NK cell trigg	98.91
1oll_A	188	NK receptor; immune system/receptor, NK cell trigg	98.91
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	98.91
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	98.91
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	98.91
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	98.91
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	98.91
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	98.9
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	98.9
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	98.9
2e6q_A	112	Obscurin-like protein 1; IG-like domain, structura	98.9
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	98.9
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	98.89
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	98.89
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	98.89
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	98.88
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	98.87
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	98.87
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	98.87
2e7b_A	103	Obscurin; IG-like domain, structural genomics, NPP	98.86
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	98.86
4hwn_A	108	FC receptor-like A; FCRLA, FCRL, IG-C2 domain, IG	98.86
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	98.85
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	98.85
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	98.85
3o3u_N	581	Maltose-binding periplasmic protein, advanced Gly	98.85
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	98.85
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	98.85
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	98.85
1pd6_A	104	Cardiac MYBP-C;, myosin-binding protein C, cardiac	98.85
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	98.85
1p6f_A	242	NKP46, natural cytotoxicity triggering receptor 1;	98.84
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	98.84
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	98.84
3rbg_A	124	Cytotoxic and regulatory T-cell molecule; IGV, crt	98.83
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	98.83
3udw_C	118	Poliovirus receptor; PVR tigit IGSF signal transdu	98.83
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	98.83
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	98.82
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	98.82
2edn_A	118	Myosin-binding protein C, fast-type; beta-sandwich	98.82
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	98.81
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	98.81
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	98.81
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	98.81
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	98.81
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	98.81
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	98.8
2gi7_A	184	GPVI protein; IG-like domains, blood clotting, cel	98.8
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	98.8
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	98.8
4fmk_A	225	Poliovirus receptor-related protein 2; immunoglobu	98.79
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	98.78
1nkr_A	201	P58-CL42 KIR; inhibitory receptor, natural killer	98.78
3qr2_A	137	Basigin; CD147, EMMPRIN, immunoglobulin-like domai	98.77
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	98.77
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	98.77
1neu_A	124	Myelin P0 protein; structural protein, glycoprotei	98.77
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	98.76
2vsd_A	105	CHIR AB1; immune system receptor, FC receptor; HET	98.76
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	98.76
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	98.75
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	98.75
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	98.74
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	98.74
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	98.74
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	98.73
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	98.73
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	98.73
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	98.73
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	98.72
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	98.71
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	98.71
3q0h_A	117	T cell immunoreceptor with IG and ITIM domains; im	98.71
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	98.71
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	98.71
1pko_A	139	Myelin oligodendrocyte glycoprotein; IGV-domain, i	98.7
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	98.7
4fa8_A	203	Secreted protein BARF1; immunoglobulin-like domain	98.7
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	98.7
1eaj_A	126	Coxsackie virus and adenovirus receptor; virus/vir	98.7
1p6f_A	242	NKP46, natural cytotoxicity triggering receptor 1;	98.69
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	98.69
3sob_L	237	Antibody light chain; beta propeller, protein bind	98.68
1nkr_A	201	P58-CL42 KIR; inhibitory receptor, natural killer	98.68
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	98.67
4i0k_A	222	CD276 antigen; immunoglobulin domain, glycoprotein	98.66
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	98.66
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	98.66
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	98.66
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	98.65
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	98.65
4fmk_A	225	Poliovirus receptor-related protein 2; immunoglobu	98.65
1moe_A	240	Anti-CEA MAB T84.66; anti carcinoembryonic antigen	98.65
3d9a_L	213	Light chain of hyhel10 antibody fragment (FAB); ly	98.64
3nl4_L	213	Antigen binding fragment, immunoglobulin IGG - LI;	98.64
1b6u_A	257	KIR2DL3, P58 killer cell inhibitory receptor; natu	98.64
3r06_A	213	Anti-mouse CD3epsilon antibody 2C11 FAB light CHA;	98.64
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	98.64
1zox_A	113	CLM-1; IG-superfamily, IG-V, NKP44-like, myeloid I	98.64
4gos_A	125	V-SET domain-containing T-cell activation inhibit;	98.64
4fa8_A	203	Secreted protein BARF1; immunoglobulin-like domain	98.62
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	98.62
1gsm_A	210	Madcam-1, mucosal addressin cell adhesion molecule	98.62
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	98.61
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	98.61
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	98.61
1lk3_L	210	9D7 light chain; antigen-antibody complex, immune	98.61
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	98.61
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	98.6
3uzq_A	253	Anti-dengue MAB 4E11; dengue antibody neutralizati	98.6
3mj8_L	213	Stimulatory hamster antibody HL4E10 FAB light CHA;	98.6
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	98.58
2oyp_A	109	Hepatitis A virus cellular receptor 2; TIM-3, T-ce	98.57
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	98.57
4frw_A	218	Poliovirus receptor-related protein 4; immunoglobu	98.57
2xzc_L	216	FAB A.17 light chain; immune system; HET: XOP; 1.3	98.57
2nms_A	124	CMRF35-like-molecule 1; IG-superfamily, IG-V, NKP4	98.56
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	98.55
2wng_A	327	Tyrosine-protein phosphatase non-receptor type sub	98.55
2zg1_A	214	Sialic acid-binding IG-like lectin 5; siglec-5 inh	98.54
2ptt_A	110	CD48 antigen; CD244, CD48, NK cell receptor, X-RAY	98.53
3s96_B	218	3B5H10 FAB light chain; huntingtin, immune system;	98.53
3rrq_A	129	Protein PD-1, programmed cell death protein 1; pro	98.53
1ncn_A	110	T lymphocyte activation antigen CD86; IG V, beta s	98.53
3tv3_L	211	PGT128 light chain, IG lambda-2 chain C regions; F	98.53
2wng_A	327	Tyrosine-protein phosphatase non-receptor type sub	98.52
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	98.52
4gjt_B	123	Poliovirus receptor-related protein 4; six-bladed	98.52
1q0x_L	212	FAB 9B1, light chain; anti-morphine antibody, FAB	98.52
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	98.51
4fom_A	308	Poliovirus receptor-related protein 3; immunoglobu	98.51
3r08_E	82	T-cell surface glycoprotein CD3 epsilon chain; ant	98.51
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	98.5
2or8_A	116	Hepatitis A virus cellular receptor 1 homolog; bet	98.5
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	98.5
3khq_A	133	B-cell antigen receptor complex-associated protei	98.49
2q87_A	110	CMRF35-H antigen; all-beta, immunoglobulin, IG-sup	98.49
3bkj_L	252	WO2 IGG2A FAB fragment light chain kappa; abeta, F	98.49
2c1o_A	254	IGK-C protein; FAB fragment, enantioselective, fin	98.49
1b6u_A	257	KIR2DL3, P58 killer cell inhibitory receptor; natu	98.49
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	98.48
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	98.48
3pv7_A	248	B7-H6, IG-like domain-containing protein DKFZP686O	98.48
1olz_A	663	Semaphorin 4D; developmental protein, CD100, beta-	98.48
1qgc_4	438	Protein (immunoglobulin); virus-antibody complex,	98.47
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	98.47
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.47
2pkd_A	111	SLAM family member 5; signaling lymphocyte activat	98.45
2d9c_A	136	Signal-regulatory protein beta-1; beta-sandwich, S	98.44
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	98.44
2znx_A	242	SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, s	98.43
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	98.43
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	98.43
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	98.43
1n26_A	325	IL-6 receptor alpha chain; transmembrane, glycopro	98.42
1xau_A	122	B- and T-lymphocyte attenuator; IG domain, beta sa	98.42
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	98.41
3nfj_J	245	T cell receptor beta chain; immunoglobulin family,	98.41
3pl6_D	268	MBP peptide / T-cell receptor beta chain chimera;	98.41
3esu_F	250	Antibody 14B7* light chain and antibody 14B7* heav	98.41
1jhl_L	108	IGG1-kappa D11.15 FV (light chain); complex(antibo	98.41
3bqu_C	233	3H6 FAB light chain; beta sheet, immune system; 3.	98.4
2d9q_B	313	Granulocyte colony-stimulating factor receptor; cy	98.4
1oaq_L	120	Light chain; antibody, allergy, IGE, conformationa	98.39
4fqp_A	313	Poliovirus receptor; immunoglobulin-like domain, I	98.38
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	98.38
1xt5_A	135	Variable region-containing chitin-binding protein	98.38
2j6e_L	234	IGM, FAB light chain; autoimmune complex human IGM	98.37
1svz_A	247	Immunoglobulin;, single-chain FV fragment 1696; an	98.37
4ei6_B	245	Vbeta16 XV19 type II natural killer T cell recept	98.37
1nqb_A	256	Single-chain antibody fragment; multivalent antibo	98.37
4esk_A	102	LAIR-1, mlair1, leukocyte-associated immunoglobuli	98.37
3auv_A	276	SC-DSFV derived from the G6-FAB; SC-DSFV (disulfid	98.37
2zg1_A	214	Sialic acid-binding IG-like lectin 5; siglec-5 inh	98.37
1qok_A	282	MFE-23 recombinant antibody fragment; immunoglobul	98.36
1h5b_A	113	Murine T cell receptor (TCR) valpha domain; immune	98.35
3umt_A	256	SCFV heavy chain and light chain; stability engine	98.35
2ghw_B	247	Anti-SARS SCFV antibody, 80R; S protein, neutraliz	98.35
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	98.34
3omz_A	259	Human vdelta1 gamma delta T cell receptor delta1A;	98.34
3q5y_A	240	TCR N15 beta; IG, T cell receptor, antigen peptide	98.33
3r0n_A	128	Poliovirus receptor-related protein 2; IG-domain,	98.33
2p1y_A	238	Bispecific alpha/beta TCR; autoimmunity, immunoglo	98.32
1c1e_H	219	Catalytic antibody 1E9 (heavy chain); diels-alder,	98.32
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	98.31
1f3r_B	257	FV antibody fragment; IG-fold, immuno complex, ant	98.31
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	98.31
2or7_A	115	T-cell immunoglobulin and mucin domain- containing	98.31
1bec_A	238	14.3.D T cell antigen receptor; T cell receptor; 1	98.3
3qib_D	270	2B4 beta chain; IG domain, immune system; HET: NAG	98.3
2rcj_C	523	Light chain; immunoglobulin M, polymeric antibodie	98.3
2ghw_B	247	Anti-SARS SCFV antibody, 80R; S protein, neutraliz	98.3
1mju_H	227	Immunoglobulin MS6-12; catalytic antibody, ester h	98.29
4frw_A	218	Poliovirus receptor-related protein 4; immunoglobu	98.29
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	98.29
1x9q_A	268	SCFV, 4M5.3 anti-fluorescein single chain antibody	98.28
4ety_A	118	LAIR-1, mlair1, leukocyte-associated immunoglobuli	98.28
3d9a_L	213	Light chain of hyhel10 antibody fragment (FAB); ly	98.28
4dzb_B	246	Vbeta2 (MAIT T cell receptor); immune system; 1.70	98.27
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	98.27
1q9r_B	222	S25-2 FAB (IGG1K) heavy chain; antigen-binding fra	98.27
2rcj_C	523	Light chain; immunoglobulin M, polymeric antibodie	98.27
4i0k_A	222	CD276 antigen; immunoglobulin domain, glycoprotein	98.27
1qok_A	282	MFE-23 recombinant antibody fragment; immunoglobul	98.27
2gjj_A	264	A21 single-chain antibody fragment against ERBB2;	98.26
1op3_H	225	FAB 2G12, heavy chain; domain-swapped FAB 2G12, an	98.26
3ux9_B	256	SCFV antibody; five helices, long loop connecting	98.25
3uzq_A	253	Anti-dengue MAB 4E11; dengue antibody neutralizati	98.25
1i1r_A	303	GP130, interleukin-6 receptor beta chain; cytokine	98.24
2q20_A	109	VK1 O18/O8 germline light chain variable domain; A	98.24
1nfd_E	212	H57 FAB; complex (immunoreceptor-immunoglobulin),	98.24
3juy_B	256	3B3 single chain variant HIV-1 antibody; envelope	98.24
3kgr_A	106	LAIR-1, hlair1, leukocyte-associated immunoglobuli	98.23
2wbj_D	279	OB TCR; transmembrane, immune response, T cell rec	98.23
2w59_A	231	IGY FCU3-4; immunoglobulin, avian, immune system;	98.23
1igt_B	444	IGG2A intact antibody - MAB231; intact immunoglobu	98.23
3d9a_H	210	Heavy chain of hyhel10 antibody fragment (FAB); ly	98.22
1pz5_B	220	Heavy chain of FAB (SYA/J6); antibody-antigen stru	98.22
2fbj_H	220	IGA-kappa J539 FAB (heavy chain); immunoglobulin;	98.21
3nl4_H	215	Antigen binding fragment,immunoglobulin IGG - HEA;	98.2
3auv_A	276	SC-DSFV derived from the G6-FAB; SC-DSFV (disulfid	98.2
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	98.2
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	98.19
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	98.19
3pv7_A	248	B7-H6, IG-like domain-containing protein DKFZP686O	98.19
1mqk_L	120	Antibody 7E2 FV fragment, light chain; membrane pr	98.19
2c1o_A	254	IGK-C protein; FAB fragment, enantioselective, fin	98.19
1c5d_H	215	Monoclonal antibody against the main immunogenic t	98.18
1oga_E	252	TRBC1, T-cell receptor beta chain C region; immune	98.18
1f3r_B	257	FV antibody fragment; IG-fold, immuno complex, ant	98.18
3bae_H	228	WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO	98.18
1i8k_A	107	Epidermal growth factor receptor antibody MR1SCFV	98.17
3mj8_L	213	Stimulatory hamster antibody HL4E10 FAB light CHA;	98.17
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	98.17
1qfw_M	108	FV, antibody (anti beta subunit) (light chain); gl	98.16
3tf7_C	256	42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE;	98.16
4ffy_L	126	DENV1-E111 single chain variable fragment (light;	98.16
3gkz_A	257	Anti-methamphetamine single chain FV; therapeutic	98.16
2p1y_A	238	Bispecific alpha/beta TCR; autoimmunity, immunoglo	98.15
3m8o_H	221	Immunoglobulin A1 heavy chain; immunoglobulin fold	98.14
3u6r_L	143	Antibody 1:7 (light chain); IG-like domain, neutra	98.14
1nqb_A	256	Single-chain antibody fragment; multivalent antibo	98.13
1ypz_E	207	T cell receptor delta, beta-2-microglobulin; H2-T2	98.12
1qgc_4	438	Protein (immunoglobulin); virus-antibody complex,	98.12
3tf7_C	256	42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE;	98.11
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	98.11
1j05_L	111	T84.66 antibody, anti-CEA MAB T84.66, light chain;	98.11
3gkz_A	257	Anti-methamphetamine single chain FV; therapeutic	98.11
1nfd_E	212	H57 FAB; complex (immunoreceptor-immunoglobulin),	98.11
3juy_B	256	3B3 single chain variant HIV-1 antibody; envelope	98.1
1lk3_L	210	9D7 light chain; antigen-antibody complex, immune	98.1
1igt_B	444	IGG2A intact antibody - MAB231; intact immunoglobu	98.09
1xiw_B	79	T-cell surface glycoprotein CD3 delta chain; CD3-e	98.09
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	98.08
1u9k_A	114	Triggering receptor expressed on myeloid cells 1;	98.08
1pew_A	109	JTO2, A lambda-6 type immunoglobulin light chain,	98.07
2pnd_A	119	V-SET and immunoglobulin domain containing 4; comp	98.07
3fku_X	280	Neutralizing antibody F10; influenza, hemagglutini	98.07
3to4_D	253	NKT vbeta2 (mouse variable domain, human constant;	98.07
3umt_A	256	SCFV heavy chain and light chain; stability engine	98.06
2vol_A	207	Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry,	98.06
2ol3_A	142	BM3.3 T-cell receptor alpha-chain; T cell receptor	98.06
1eeq_A	114	Kappa-4 immunoglobulin (light chain); protein stab	98.05
3bia_X	116	T-cell immunoglobulin and mucin domain- containing	98.05
1hxm_B	242	Gamma-delta T-cell receptor; IG domain, TCR, GDTCR	98.04
1za6_B	344	IGG heavy chain; immunoglobulin fold, CH2-domain-d	98.04
1dee_B	223	IGM RF 2A2; FAB-IBP complex 2.7A resolution bindin	98.04
3bj9_1	116	Immunoglobulin IOTA chain, immunoglobulin lambda-	98.03
1i3g_L	111	Antibody FV fragment; antibiotic; 2.44A {Mus muscu	98.03
1dlf_L	113	Anti-dansyl immunoglobulin IGG2A(S); FV fragment;	98.03
1nko_A	132	Sialic acid binding IG-like lectin 7; immunoglobul	98.02
2jju_A	127	Signal regulatory protein beta-1; immunoglobulin d	98.01
2xzc_L	216	FAB A.17 light chain; immune system; HET: XOP; 1.3	98.0
2e27_L	119	Anti-ciguatoxin antibody, light chain; immunoglobu	98.0
2xqy_G	261	A13-D6.3 monoclonal antibody, envelope glycoprotei	97.98
2gki_A	291	Nuclease; anti-DNA antibody, catalytic antibody, i	97.98
2rgs_A	218	I, IG gamma-2B heavy chain; FC-fragment, immunoglo	97.97
2fbj_H	220	IGA-kappa J539 FAB (heavy chain); immunoglobulin;	97.97
2qhl_A	111	Novel immune-type receptor 10; immunoglobulin vari	97.96
3fku_X	280	Neutralizing antibody F10; influenza, hemagglutini	97.96
2frg_P	106	TREM-like transcript-1; immunoglobulin-like, beta-	97.96
2j6e_L	234	IGM, FAB light chain; autoimmune complex human IGM	97.96
3esu_F	250	Antibody 14B7* light chain and antibody 14B7* heav	97.95
2wqr_A	323	IG epsilon chain C region; immune system, immunogl	97.94
3bdb_A	137	Novel immune-type receptor 11; immunoglobulin vari	97.94
2ywz_A	111	NEW antigen receptor variable domain; IG VNAR, imm	97.93
1iga_A	475	IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg	97.92
3bik_B	134	Programmed cell death protein 1; CO-stimulation, r	97.92
2aw2_A	120	B and T lymphocyte attenuator; IGI domain, IGG dom	97.92
1hkf_A	122	NKP44, NK cell activating receptor; natural cytoto	97.92
1hzh_H	457	IGG, immunoglobulin heavy chain; antibody, immune	97.91
1mju_H	227	Immunoglobulin MS6-12; catalytic antibody, ester h	97.91
3kg5_A	134	B-cell antigen receptor complex-associated protei	97.91
1q0x_L	212	FAB 9B1, light chain; anti-morphine antibody, FAB	97.91
2yz1_A	120	Tyrosine-protein phosphatase non-receptor type sub	97.9
3bn9_D	257	E2 FAB heavy chain; antibody-protease complex, pro	97.9
2yc1_B	146	Single chain antibody fragment 9004G; immune syste	97.89
2coq_A	108	NEW antigen receptor variable domain; IG VNAR, nat	97.89
1tvd_A	116	T cell receptor, ES204 V delta; immunoreceptor, TC	97.89
2znx_A	242	SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, s	97.88
1dn0_B	232	IGM-kappa cold agglutinin (heavy chain); FAB, anti	97.88
2h32_A	126	Immunoglobulin IOTA chain; beta sheets, V and C-ty	97.88
1svz_A	247	Immunoglobulin;, single-chain FV fragment 1696; an	97.87
1q9r_B	222	S25-2 FAB (IGG1K) heavy chain; antigen-binding fra	97.87
1dlf_H	124	Anti-dansyl immunoglobulin IGG2A(S); FV fragment;	97.86
3bp6_A	117	Programmed cell death protein 1; PD-1, PD-L2, comp	97.85
3n9g_H	230	FAB fragment of MAB CR4354, heavy chain; human neu	97.85
2gki_A	291	Nuclease; anti-DNA antibody, catalytic antibody, i	97.85
1ypz_F	230	T-cell receptor gamma chain, beta-2-microglobulin;	97.84
2d7t_H	139	Anti polyhydroxybutyrate antibody FV, heavy chain;	97.83
1fo0_A	116	Protein (BM3.3 T cell receptor alpha-chain); class	97.83
2atp_B	115	T-cell surface glycoprotein CD8 beta chain; CD8AB,	97.83
3liz_H	253	4C3 monoclonal antibody heavy chain; hydrolase-imm	97.83
3nl4_L	213	Antigen binding fragment, immunoglobulin IGG - LI;	97.81
1lp9_E	194	T-cell receptor alpha chain; immunoregulatory comp	97.81
1x9q_A	268	SCFV, 4M5.3 anti-fluorescein single chain antibody	97.8
3sob_L	237	Antibody light chain; beta propeller, protein bind	97.8
1mqk_H	127	Antibody 7E2 FV fragment, heavy chain; membrane pr	97.79
3bkj_L	252	WO2 IGG2A FAB fragment light chain kappa; abeta, F	97.79
3qhz_H	232	Human monoclonal antibody DEL2D1, FAB heavy chain;	97.79
3ux9_B	256	SCFV antibody; five helices, long loop connecting	97.78
3tv3_L	211	PGT128 light chain, IG lambda-2 chain C regions; F	97.78
1p4b_L	135	Antibody variable light chain; FV antibody, antige	97.76
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	97.76
3m8o_H	221	Immunoglobulin A1 heavy chain; immunoglobulin fold	97.76
2bnu_A	203	TCR alpha chain, T-cell receptor alpha chain C reg	97.76
1qfo_A	119	Protein (sialoadhesin); immunoglobulin superfamily	97.76
3b9v_A	120	Heavy chain variable domain; antibody engineering,	97.76
2jjs_C	127	Leukocyte surface antigen CD47; signal regulatory	97.75
2otu_A	115	FV light chain variable domain; antibody FV polygl	97.75
1u3h_A	110	T-cell receptor alpha-chain; complex, immune syste	96.95
1jtp_A	148	Single-domain antibody; immunoglobulin, heavy chai	97.75
3s96_B	218	3B5H10 FAB light chain; huntingtin, immune system;	97.75
3sob_H	256	Antibody heavy chain, low-density lipoprotein rece	97.75
1kxv_C	121	Camelid VHH domain CAB10; beta 8 alpha 8, beta bar	97.74
3dmm_D	150	T-cell surface glycoprotein CD8 beta chain; T cell	97.74
3bqu_C	233	3H6 FAB light chain; beta sheet, immune system; 3.	97.74
3noi_A	120	Natural cytotoxicity triggering receptor 3; immune	97.74
1smo_A	119	Triggering receptor expressed on myeloid cells 1;	97.72
1hxm_A	229	Gamma-delta T-cell receptor; IG domain, TCR, GDTCR	97.72
2gjj_A	264	A21 single-chain antibody fragment against ERBB2;	97.72
1sq2_N	113	Novel antigen receptor; immunoglobulin fold, prote	97.71
2oi9_C	121	V beta, T cell receptor beta chain; TCR, MHC, immu	97.71
1moe_A	240	Anti-CEA MAB T84.66; anti carcinoembryonic antigen	97.71
1kgc_D	206	T-cell receptor alpha chain; LC13 clone, immune sy	97.71
3mlr_H	226	Human monoclonal anti-HIV-1 GP120 V3 antibody 255	97.7
1fo0_B	112	Protein (BM3.3 T cell receptor beta-chain); class	97.7
2eys_A	210	NKT15; natural killer T cell receptor, immune syst	97.7
1j05_H	121	T84.66 antibody, anti-CEA MAB T84.66, heavy chain;	97.7
1n4x_H	120	Immunoglobulin heavy chain variable region; immune	97.7
1igy_B	434	IGG1 intact antibody MAB61.1.3; intact immunoglobu	97.7

>3knb_B Obscurin-like protein 1; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2wp3_O* 2wwm_C 2wwk_O

Probab=99.47  E-value=6.1e-14  Score=81.45  Aligned_cols=58  Identities=19%  Similarity=0.186  Sum_probs=45.7

Q ss_pred             cccCeEcCcCccceEEecCC--EEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeCC
Q psy7035           2 SFSNVQLYNNISAGVIVSNQ--SLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGL   60 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~~~~~--tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~p   60 (70)
                      +|||++|..+.+..+..+++  +|+|.+++++|+|.|+|.|+|..|...+ .+.|.|...|
T Consensus        48 ~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~-~~~l~V~~pP  107 (107)
T 3knb_B           48 EKGGQQLAASERLSFPADGAEHGLLLTAALPTDAGVYVCRARNAAGEAYA-AAAVTVLEPP  107 (107)
T ss_dssp             EETTEECCCCSSEECCEETTEEEEEESSCCGGGCEEEEEEEEETTEEEEE-EEEEEEEC--
T ss_pred             EECcccccceeeEEEeecCceEEEEEecCChhhCEEEEEEEEECCCEEEE-EEEEEEEcCC
Confidence            68999998766544433333  7999999999999999999999998654 7899998554

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.46  E-value=4.3e-13  Score=77.10  Aligned_cols=64  Identities=19%  Similarity=0.093  Sum_probs=50.4

Q ss_pred             cccCeEcCcCccceEEec--CCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeCCCCCCCC
Q psy7035           2 SFSNVQLYNNISAGVIVS--NQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGLGIPAEP   66 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~~~--~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~p~~~~~p   66 (70)
                      +|||+++..+.+..+...  +.+|+|.+++++|+|.|+|.|.|..|.... .+.|.|...|..|..|
T Consensus        42 ~k~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~-~~~l~V~~~p~~P~~p  107 (114)
T 2cqv_A           42 MKFRKQIQESEHMKVENSENGSKLTILAARQEHCGCYTLLVENKLGSRQA-QVNLTVVDKPDPPAGT  107 (114)
T ss_dssp             EESSSBCCCSSSEEEEECSSEEEEEETTCCTTTCEEEEEEEECSSCEEEC-CEEEEEECSCSCCCCC
T ss_pred             EECCEECcCCCCEEEEEcCCEEEEEECCCChhcCEEEEEEEEECCCcEEE-EEEEEEECCCCCCCCC
Confidence            578888876554433322  458999999999999999999999997644 7999999888877655

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X

Probab=99.43  E-value=2e-13  Score=82.85  Aligned_cols=62  Identities=18%  Similarity=0.077  Sum_probs=49.3

Q ss_pred             cccCeEcCcCccceEEec---------CCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeCCCCCC
Q psy7035           2 SFSNVQLYNNISAGVIVS---------NQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGLGIPA   64 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~~~---------~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~p~~~~   64 (70)
                      +|||++|..+.+......         .++|.|.+++..|+|.|+|.|+|..|.. +..+.|.|...|....
T Consensus        35 ~knG~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~-~~t~~l~v~~~P~~~~  105 (126)
T 1he7_A           35 LFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQA-SASIMAAFMDNPFEFN  105 (126)
T ss_dssp             EETTEECCCCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEEEEEETTEEE-EEEEEECCCSCTTSCC
T ss_pred             EECCEECCCCCceeEEEeeccccccccceEEEECcCCCCCCEEEEEEEEECCCeE-EEEEEEEEEcCCCCCC
Confidence            689999987665443321         3689999999999999999999999986 4478899987776533

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*

Probab=99.41  E-value=2.1e-13  Score=83.60  Aligned_cols=61  Identities=23%  Similarity=0.192  Sum_probs=49.2

Q ss_pred             cccCeEcCcCccceEEecCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeCCCC
Q psy7035           2 SFSNVQLYNNISAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGLGI   62 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~p~~   62 (70)
                      ++||.++..+.+..+...+++|.|.+++++|+|.|+|.|.|..|...|++++|.|..+|..
T Consensus       144 ~~~g~~l~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~s~~~~l~v~~~~~~  204 (208)
T 3r4d_A          144 LFNSQSLQLTERMTLSQNNSILRIDPIKREDAGEYQCEISNPVSVRRSNSIKLDIIFDPHH  204 (208)
T ss_dssp             EETTEECCCCSSEEEETTTTEEEESSCCGGGCEEEEEEEECTTCCEECCCEEECCC-----
T ss_pred             EECCEeCCCCCCeEEcCCCCEEEEeccCHHhCeEEEEEEecCCCcccCCceeeeEEeCCcc
Confidence            5788888766655555566899999999999999999999999999999999999877654

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.41  E-value=7.7e-13  Score=74.21  Aligned_cols=56  Identities=18%  Similarity=0.252  Sum_probs=46.4

Q ss_pred             cccCeEcCcCccceEEecCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEe
Q psy7035           2 SFSNVQLYNNISAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDI   58 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~   58 (70)
                      ++||.++.....+..+..+++|.|.+++.+|+|.|+|.|.|..|.. +..+.|.|..
T Consensus        43 ~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~-~~~~~l~V~~   98 (100)
T 2edj_A           43 LKEGFTFPGRDPRATIQEQGTLQIKNLRISDTGTYTCVATSSSGET-SWSAVLDVTE   98 (100)
T ss_dssp             EESSSEESSSCSSCEECTTCCEEEESCCTTTCCEEEEEEECSSCCC-BCCEEEEEES
T ss_pred             EECCEECCCCCCCEEEcCCCEEEEccCCcccCEEEEEEEEcCCCCE-EEEEEEEEec
Confidence            5788888754445556678899999999999999999999999976 5578999974

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.40  E-value=7.7e-13  Score=75.72  Aligned_cols=57  Identities=14%  Similarity=0.129  Sum_probs=45.6

Q ss_pred             cccCeEcCcCccceEEecCC--EEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeCCC
Q psy7035           2 SFSNVQLYNNISAGVIVSNQ--SLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGLG   61 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~~~~~--tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~p~   61 (70)
                      +|||++|..+.+..+..+++  +|+|.+++.+|+|.|+|.|.|.   ..+..+.|.|...|.
T Consensus        40 ~k~g~~l~~~~r~~i~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~---~~~~~a~L~V~~~P~   98 (100)
T 2yuz_A           40 TKNGLPVQESDRLKVVQKGRIHKLVIANALTEDEGDYVFAPDAY---NVTLPAKVHVISGPS   98 (100)
T ss_dssp             EETTEECCCCSSEEEEECSSEEEEEESSCCGGGCSEEEEEESSS---CCCEEEEEEEECCSC
T ss_pred             EECCEECCCCCcEEEEEeCCEEEEEECCCChhhCEEEEEEEcCC---CeeEEEEEEEeCCCC
Confidence            58999998766655544443  7999999999999999999998   346689999996653

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.38  E-value=8.5e-13  Score=76.23  Aligned_cols=58  Identities=17%  Similarity=0.147  Sum_probs=47.8

Q ss_pred             cccCeEcCcCccceEEecCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeCC
Q psy7035           2 SFSNVQLYNNISAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGL   60 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~p   60 (70)
                      +|||+.+.....+.....+++|.|.+++.+|+|.|+|.|.|..|.. +..+.|.|...|
T Consensus        43 ~k~g~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~-~~~~~l~V~~~~  100 (118)
T 2eo9_A           43 RKDGVLVSTQDSRIKQLENGVLQIRYAKLGDTGRYTCIASTPSGEA-TWSAYIEVQEFG  100 (118)
T ss_dssp             EESSSBCCTTSTTEEEEETTEEEEESCCGGGCCCEEEEEECSSCEE-EEECCEEEECCS
T ss_pred             EECCEECcCCCCeEEEccCCEEEEccCCcCCCEEEEEEEEcCCCcE-EEEEEEEEEeCC
Confidence            5788888655555556778999999999999999999999999985 446889998654

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} SCOP: b.1.1.0

Probab=99.38  E-value=6.1e-13  Score=75.26  Aligned_cols=60  Identities=17%  Similarity=0.148  Sum_probs=42.1

Q ss_pred             cccCeEcCcCccceEEecCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeCCCC
Q psy7035           2 SFSNVQLYNNISAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGLGI   62 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~p~~   62 (70)
                      ++||.++..+.+..+...+++|.|.+++.+|+|.|+|.|.|..|...+ .+.|.|...|..
T Consensus        45 ~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~-~~~l~V~~~~~~  104 (108)
T 3kvq_A           45 FKDNETLVEDSGIVLKDGNRNLTIRRVRKEDEGLYTCQACSVLGCAKV-EAFFIIEGAQEK  104 (108)
T ss_dssp             EESSSBCCCBTTEEEETTTTEEEECSCCGGGCEEEEEEEC----CEEE-EEEEEEEC----
T ss_pred             EECCeEcccCCCeEEeCCCcEEEEeecCcccCEEEEEEEEeCCCceEE-EEEEEEeCCCcc
Confidence            567777766555555556789999999999999999999999998654 689999965543

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4

Probab=99.38  E-value=3.9e-13  Score=77.80  Aligned_cols=59  Identities=15%  Similarity=0.118  Sum_probs=47.0

Q ss_pred             cccCeEcCcCccceEEe------cCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeCCC
Q psy7035           2 SFSNVQLYNNISAGVIV------SNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGLG   61 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~~------~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~p~   61 (70)
                      +|||+++..+.+.....      .+++|.|.+++++|+|.|+|.|+|..|...+ .+.|.|...|.
T Consensus        40 ~k~g~~l~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~-~~~l~v~~~P~  104 (118)
T 1wwc_A           40 LHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQ-TINGHFLKEPF  104 (118)
T ss_dssp             EETTEECCCSSSEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEEETTEEEEE-EEEECCSCCCC
T ss_pred             EECCEECCCCCceeEEEeccCccccEEEEECCCChhcCEEEEEEEECCCCeEee-EEEEEEccCCC
Confidence            57888887655433332      4568999999999999999999999998654 78888887774

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X

Probab=99.37  E-value=5.7e-13  Score=76.29  Aligned_cols=59  Identities=17%  Similarity=0.206  Sum_probs=44.4

Q ss_pred             cccCeEcCcCccceEEe---c----CCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeCCC
Q psy7035           2 SFSNVQLYNNISAGVIV---S----NQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGLG   61 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~~---~----~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~p~   61 (70)
                      +|||++|..+.+....+   .    +++|.|.+++++|+|.|+|.|+|..|.. +..+.|.|...|.
T Consensus        36 ~k~g~~l~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~-~~~~~l~V~~~P~  101 (103)
T 1wwb_X           36 FYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKD-EKQISAHFMGWPG  101 (103)
T ss_dssp             EETTEEECCCSSEEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEECSSCEE-EEEEEECCSCCCC
T ss_pred             EECCEECCCCCcEeEEEEecCCcEEEEEEEECCCCcccCEEEEEEEEeCCCcE-eEEEEEEECCCCC
Confidence            57899887654321211   2    3459999999999999999999999986 4478899885554

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=99.37  E-value=2e-12  Score=75.24  Aligned_cols=61  Identities=16%  Similarity=0.182  Sum_probs=46.7

Q ss_pred             cccCeEcCcCccceEEecC--C--EEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeCCCCC
Q psy7035           2 SFSNVQLYNNISAGVIVSN--Q--SLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGLGIP   63 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~~~~--~--tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~p~~~   63 (70)
                      ++||+.+..+..+..+..+  +  +|+|.+++.+|+|.|+|.|.|..|.. +..+.|.|...|..+
T Consensus        50 ~k~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~-~~~~~l~V~~~p~~~  114 (116)
T 2kkq_A           50 KRNNEMVQFNTDRISLYQDNTGRVTLLIKDVNKKDAGWYTVSAVNEAGVT-TCNTRLDVTARPNQT  114 (116)
T ss_dssp             EETTEECCCCBTTEEEEECTTCEEEEEEEEECGGGCEEEEEEEEETTEEE-EEEEEEEEECCSCCC
T ss_pred             EECCEECcCCCCeEEEEeCCCCeEEEEECCCCcccCEEEEEEEEcCCCeE-EEEEEEEEeCCCCCC
Confidence            5788888754333333332  2  89999999999999999999999986 558899999776543

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.37  E-value=1.1e-12  Score=74.59  Aligned_cols=61  Identities=23%  Similarity=0.372  Sum_probs=47.3

Q ss_pred             cccCeEcCcCccceEEe-cCC--EEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeCCCCC
Q psy7035           2 SFSNVQLYNNISAGVIV-SNQ--SLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGLGIP   63 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~~-~~~--tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~p~~~   63 (70)
                      ++||+++..+.+..... .++  +|+|.+++.+|+|.|+|.|.|..|.. +..+.|.|...|..|
T Consensus        44 ~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~-~~~~~l~V~~~p~~P  107 (110)
T 2dm3_A           44 QLDGKPVRPDSAHKMLVRENGVHSLIIEPVTSRDAGIYTCIATNRAGQN-SFSLELVVAAKESGP  107 (110)
T ss_dssp             BBSSSBCCCCSSEEEEECTTSCEEEEESSCCGGGCSBBCEEEECSSCEE-EECCEEEEECCCCSS
T ss_pred             EECCEECCCCCceEEEEecCCeEEEEEeeCCcccCEEEEEEEECCCCEE-EEEEEEEEeCCCCCC
Confidence            57888887654444333 333  89999999999999999999999984 668899999665543

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A

Probab=99.35  E-value=1.7e-12  Score=79.42  Aligned_cols=64  Identities=17%  Similarity=0.275  Sum_probs=47.7

Q ss_pred             cccCeEcCcCccceEEecCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeCCCCCCCC
Q psy7035           2 SFSNVQLYNNISAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGLGIPAEP   66 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~p~~~~~p   66 (70)
                      ++||.++.....+ ....+++|.|.+++.+|+|.|+|.|.|..|...+..+.|.|.+.|.+...|
T Consensus       147 ~~~~~~l~~~~~~-~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~s~~~~l~V~~~P~~~~~P  210 (212)
T 2v9r_A          147 KKDGSPLDDKDER-ITIRGGKLMITYTRKSDAGKYVCVGTNMVGERESEVAELTVLERPSFVKAA  210 (212)
T ss_dssp             EETTEEECTTSTT-EEEETTEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC--------
T ss_pred             EECCccCCCCcce-EEccCCeEEEeeCCHhhCeeEEEEEecccCceecceEEEEEEeCchHhhhc
Confidence            5788888754433 445688999999999999999999999999988888999999888776655

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.34  E-value=5.3e-12  Score=72.10  Aligned_cols=62  Identities=13%  Similarity=0.035  Sum_probs=48.4

Q ss_pred             cccCeEcCcCccceEEecC--CEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeCCCCCCCCcc
Q psy7035           2 SFSNVQLYNNISAGVIVSN--QSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGLGIPAEPLF   68 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~~~~--~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~p~~~~~p~~   68 (70)
                      +|||+++....+..+...+  .+|+|.+++.+|+|.|+|.|.|     .+..+.|.|.+.|.....|..
T Consensus        47 ~k~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n-----~~~~~~l~V~~~p~~~~~p~~  110 (113)
T 2cpc_A           47 TKDGEEVVESPALLLQKEDTVRRLVLPAVQLEDSGEYLCEIDD-----ESASFTVTVTEPPVRIIYSGP  110 (113)
T ss_dssp             EETTEECCCBTTBEEEECSSEEEEEESSCCTTTCEEEEEESSS-----CEEEEEEEEECCCCCCCCCCC
T ss_pred             EECCEECccCCCEEEEECCCEEEEEECCCCcccCEEEEEEEec-----CcEEEEEEEecCCchhccCCC
Confidence            5788888766555444333  5899999999999999999999     466899999988866555543

>3knb_A Titin; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*

Probab=99.33  E-value=2.5e-12  Score=73.59  Aligned_cols=55  Identities=16%  Similarity=0.194  Sum_probs=42.5

Q ss_pred             cccCeEcCcCccc-e-EEecC--CEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEE
Q psy7035           2 SFSNVQLYNNISA-G-VIVSN--QSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYD   57 (70)
Q Consensus         2 ~~ng~~l~~~~~~-~-~~~~~--~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~   57 (70)
                      +|||++|..+.+. . +...+  .+|+|.+++++|+|.|+|.|+|..|+. +..+.|.|+
T Consensus        40 ~k~g~~i~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~-~~~~~l~V~   98 (100)
T 3knb_A           40 SCGGRKIHSQEQGRFHIENTDDLTTLIIMDVQKQDGGLYTLSLGNEFGSD-SATVNIHIR   98 (100)
T ss_dssp             EETTEECCTTGGGTEEEEECSSEEEEEESSCCGGGCEEEEEEEEETTEEE-EEEEEEEEE
T ss_pred             EECceEeeeeccceeeeecccceEEEEEcCCCccCCEEEEEEEEECCCEE-EEEEEEEEE
Confidence            6889999754432 2 22222  379999999999999999999999986 457888886

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.32  E-value=1e-11  Score=71.74  Aligned_cols=57  Identities=11%  Similarity=0.054  Sum_probs=43.9

Q ss_pred             cccCeEcCcCccceEEecCC--EEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeCC
Q psy7035           2 SFSNVQLYNNISAGVIVSNQ--SLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGL   60 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~~~~~--tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~p   60 (70)
                      +|||+++. ..+..+...++  +|+|.+++++|+|.|+|.|+|..|.. +..+.|.|...|
T Consensus        59 ~k~g~~l~-~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~-~~~~~l~V~~~P  117 (118)
T 2e7c_A           59 TKGGAPLD-TSRVHVRTSDFDTVFFVRQAARSDSGEYELSVQIENMKD-TATIRIRVVEKA  117 (118)
T ss_dssp             EETTEECC-CSSCEEEECSSEEEEEESSCCTTTCEEEEEEEECSSCEE-CCEEEEEEECCC
T ss_pred             EECCEECC-CCcEEEEECCCeEEEEECCCChhcCEEEEEEEEeCCCeE-EEEEEEEEEcCC
Confidence            57888886 33344444444  49999999999999999999999965 557899998544

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=99.31  E-value=7.7e-12  Score=69.77  Aligned_cols=55  Identities=20%  Similarity=0.308  Sum_probs=44.0

Q ss_pred             cccCeEcCcCccceEE-ecCC--EEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEE
Q psy7035           2 SFSNVQLYNNISAGVI-VSNQ--SLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYD   57 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~-~~~~--tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~   57 (70)
                      ++||+++..+.+.... ..++  +|.|.+++.+|+|.|+|.|.|..|.. +..+.|.|.
T Consensus        40 ~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~-~~~~~l~V~   97 (100)
T 2kdg_A           40 YLNGRTVQSDDLHKMIVSEKGLHSLIFEVVRASDAGAYACVAKNRAGEA-TFTVQLDVL   97 (100)
T ss_dssp             EETTEEECCCSSSCEEEETTTEEEEEESSCCGGGCEEEEEEEEETTEEE-EEEEEEEEE
T ss_pred             EECCEECcCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCeE-EEEEEEEEE
Confidence            5788888765544333 3444  89999999999999999999999985 567889887

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens}

Probab=99.31  E-value=7.3e-12  Score=69.93  Aligned_cols=55  Identities=20%  Similarity=0.282  Sum_probs=45.5

Q ss_pred             cccCeEcCcCccceEEecCC--EEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEE
Q psy7035           2 SFSNVQLYNNISAGVIVSNQ--SLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYD   57 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~~~~~--tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~   57 (70)
                      +|||+++..+.+..+...++  +|.|.+++.+|+|.|+|.|.|..|...+ .+.|.|.
T Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~-~~~l~V~   93 (97)
T 2bk8_A           37 YFGVRQLENSEKYEITYEDGVAILYVKDITKLDDGTYRCKVVNDYGEDSS-YAELFVK   93 (97)
T ss_dssp             EETTEECCSSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEECSSCEEEE-EEEEEET
T ss_pred             EECCEECcCCCCEEEEEcCCeEEEEEecCChhhCeEEEEEEECCCCeEeE-EEEEEEE
Confidence            57888887666655555667  9999999999999999999999998755 6788875

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.29  E-value=1.6e-11  Score=69.28  Aligned_cols=56  Identities=11%  Similarity=0.074  Sum_probs=43.2

Q ss_pred             cccCeEcCcCccceEEecC--CEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeCCCC
Q psy7035           2 SFSNVQLYNNISAGVIVSN--QSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGLGI   62 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~~~~--~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~p~~   62 (70)
                      +|||+++..+.+..+...+  .+|+|.+++.+|+|.|+|.|.|..+     .+.|.|...|..
T Consensus        44 ~k~g~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~~-----~~~l~V~~~P~p  101 (104)
T 2e6p_A           44 YKDGQKVEESELLVVKMDGRKHRLILPEAKVQDSGEFECRTEGVSA-----FFGVTVQDPSGP  101 (104)
T ss_dssp             EETTEECCCBTTBEEEEETTEEEEEESSCCTTTCEEEEEECSSCCC-----CEEEEEECCCCS
T ss_pred             eeCCEECCCCCCEEEEeCCCEEEEEECCCChhhCEEEEEEECCceE-----EEEEEEcCCCCC
Confidence            5788888766555444333  3799999999999999999999733     688999966543

>4hwu_A Fibroblast growth factor receptor 2; FGFR2, KGFR, CD332, IG-C2 type 1 domain, IG superfamily, IMM system, structural genomics, PSI-biology; 2.90A {Mus musculus}

Probab=99.29  E-value=1e-11  Score=69.20  Aligned_cols=55  Identities=13%  Similarity=0.164  Sum_probs=44.4

Q ss_pred             cccCeEcCcCccceEEecCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeC
Q psy7035           2 SFSNVQLYNNISAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIG   59 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~   59 (70)
                      +|||.++..+.+  ..+.+++|.|.+++.+|+|.|+|.|.|..|.. +..+.|.|..+
T Consensus        34 ~k~g~~~~~~~~--~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~-~~~~~l~V~~~   88 (95)
T 4hwu_A           34 TKDGVHLGPNNR--TVLIGEYLQIKGATPRDSGLYACTAARTVDSE-TWIFMVNVTDA   88 (95)
T ss_dssp             EETTEEECCCSS--EEEETTEEEECSCCGGGCEEEEEEEECSSCEE-EEEEEEEECCC
T ss_pred             EECCEECCCCce--EEEeCCEEEECcCCcccCEEEEEEEccCCCcE-EEEEEEEEeCC
Confidence            578888866543  34467899999999999999999999999964 55788998743

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.28  E-value=8.5e-12  Score=71.05  Aligned_cols=60  Identities=17%  Similarity=0.055  Sum_probs=45.2

Q ss_pred             cccCeEcCcCccceEE-ec-CC--EEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeCCCC
Q psy7035           2 SFSNVQLYNNISAGVI-VS-NQ--SLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGLGI   62 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~-~~-~~--tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~p~~   62 (70)
                      +|||+++..+..+..+ .. ++  +|.|.+++.+|+|.|+|.|.|..|.. +..+.|.|...|..
T Consensus        43 ~k~g~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~-~~~~~l~V~~~~~~  106 (110)
T 2dm2_A           43 FKDGKQISPKSDHYTIQRDLDGTCSLHTTASTLDDDGNYTIMAANPQGRI-SCTGRLMVQAVNSG  106 (110)
T ss_dssp             ECSSCBCCTTCSSEEEEECTTCEEEEEESSCCTTTCSCCEEEEECTTCCE-EECCCEEEECCSCC
T ss_pred             EECCEECCCCCCeEEEEECCCcEEEEEECCCChhhCEEEEEEEEECCCeE-EEEEEEEEECCCCC
Confidence            5788888754333333 22 34  69999999999999999999999986 55789999855443

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens}

Probab=99.28  E-value=8.4e-12  Score=69.49  Aligned_cols=55  Identities=18%  Similarity=0.164  Sum_probs=43.2

Q ss_pred             cccCeEcCcCccceEEecCC---EEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEE
Q psy7035           2 SFSNVQLYNNISAGVIVSNQ---SLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYD   57 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~~~~~---tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~   57 (70)
                      +|||+++..+.++.....++   +|.|.+++.+|+|.|+|.|.|..|... ..+.|.|.
T Consensus        40 ~k~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~g~~~-~~~~l~V~   97 (99)
T 1u2h_A           40 LRNRQPVRPDQRRFAEEAEGGLCRLRILAAERGDAGFYTCKAVNEYGARQ-CEARLEVR   97 (99)
T ss_dssp             EETTEECCCBTTEEEEECGGGEEEEEESSCCGGGCEEEEEEEEETTEEEE-EEEEEEEE
T ss_pred             EECCEECCCCCCEEEEECCCCEEEEEEccCCcCCCEEEEEEEEECCCcee-EEEEEEEE
Confidence            57888887655444443333   799999999999999999999999864 46788886

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}

Probab=99.27  E-value=7.3e-12  Score=75.67  Aligned_cols=58  Identities=26%  Similarity=0.346  Sum_probs=47.7

Q ss_pred             cccCeEcCcCccceEEecCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeCC
Q psy7035           2 SFSNVQLYNNISAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGL   60 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~p   60 (70)
                      ++||.++..+. +.....+++|.|.+++.+|+|.|+|.|+|..|...+.++.|.|.++|
T Consensus       135 ~~~~~~~~~~~-~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~pp  192 (192)
T 2iep_A          135 IKGDSALRENS-RIAVLESGSLRIHNVQKEDAGQYRCVAKNSLGTAYSKLVKLEVEVFA  192 (192)
T ss_dssp             EETTEECCCCS-SEEECTTSCEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC--
T ss_pred             EeCCEEccCCC-cEEEecCCcEEEecCChhhCEEEEEEEEcCCCcEEEEEEEEEEEeCC
Confidence            46788776554 34455778999999999999999999999999988889999998765

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.27  E-value=1.3e-11  Score=69.61  Aligned_cols=56  Identities=16%  Similarity=0.166  Sum_probs=43.2

Q ss_pred             cccCeEcCcCccceEEecCC--EEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeCCCC
Q psy7035           2 SFSNVQLYNNISAGVIVSNQ--SLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGLGI   62 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~~~~~--tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~p~~   62 (70)
                      +|||+++..+.+..+..++.  +|+|.+++.+|+|.|+|.|.|     .+..+.|.|...|..
T Consensus        42 ~k~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n-----~~~~~~l~V~~~p~~   99 (103)
T 2edf_A           42 LKDRKAIRKSQKYDVVCEGTMAMLVIRGASLKDAGEYTCEVEA-----SKSTASLHVEEKASG   99 (103)
T ss_dssp             EESSCBCCCSSSEEEEEETTEEEEEESSCCTTTCSEEEEECSS-----CEEEEEEEECCCSSS
T ss_pred             EECCEEccCCCCEEEEECCCEEEEEECCCCcccCEEEEEEEcc-----CCcEEEEEEeCCCCC
Confidence            57888887665544443333  799999999999999999999     366789999865543

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens}

Probab=99.27  E-value=1.8e-11  Score=68.72  Aligned_cols=56  Identities=16%  Similarity=0.190  Sum_probs=44.5

Q ss_pred             cccCeEcCcCccceEEecC--CEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEe
Q psy7035           2 SFSNVQLYNNISAGVIVSN--QSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDI   58 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~~~~--~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~   58 (70)
                      +|||.++..+.+..+...+  .+|.|.+++.+|+|.|+|.|.|..|.. +..+.|.|..
T Consensus        43 ~k~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~-~~~~~l~V~~  100 (103)
T 3qp3_A           43 YHNGVELQESSKIHYTNTSGVLTLEILDCHTDDSGTYRAVCTNYKGEA-SDYATLDVTG  100 (103)
T ss_dssp             EETTEECCCCSSEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEEE-EEEEEEEEEC
T ss_pred             EECCEECCCCCCEEEEECCCEEEEEEcCCCcccCEEEEEEEEeCCCcE-EEEEEEEEEC
Confidence            5788888766554444333  379999999999999999999999986 5578899873

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A

Probab=99.26  E-value=1e-11  Score=76.83  Aligned_cols=60  Identities=17%  Similarity=0.188  Sum_probs=47.7

Q ss_pred             cccCeEcCcCccceEEecCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeCCCC
Q psy7035           2 SFSNVQLYNNISAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGLGI   62 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~p~~   62 (70)
                      ++||.++.....+ ..+.+++|.|.+++.+|+|.|+|.|.|..|...+.++.|.|...+..
T Consensus       145 ~~~~~~~~~~~~~-~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~s~~~~l~V~~~~~~  204 (212)
T 2yd1_A          145 IKNQTKVDMSNPR-YSLKDGFLQIENSREEDQGKYECVAENSMGTEHSKATNLYVKVRRVG  204 (212)
T ss_dssp             EETTEECCTTSTT-EEEETTEEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC---C
T ss_pred             EECCeEcccCCCe-EEccCCeEEEccCChhhCEEEEEEeecCCCceeEEEEEEEEEecccc
Confidence            5778888654333 35578899999999999999999999999999888899999966543

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens}

Probab=99.26  E-value=1.9e-11  Score=67.93  Aligned_cols=55  Identities=16%  Similarity=0.193  Sum_probs=43.8

Q ss_pred             cccCeEcCcCccceEEecCC--EEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEE
Q psy7035           2 SFSNVQLYNNISAGVIVSNQ--SLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYD   57 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~~~~~--tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~   57 (70)
                      ++||.++..+.+..+...++  +|.|.+++.+|+|.|+|.|.|..|.. +..+.|.|.
T Consensus        41 ~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~V~   97 (99)
T 3puc_A           41 TKDGKAITQGGKYKLSEDKGGFFLEIHKTDTSDSGLYTCTVKNSAGSV-SSSCKLTIK   97 (99)
T ss_dssp             EETTEECCSSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEEE-EEEEEEEEE
T ss_pred             EECCEECcCCCCEEEEEeCCEEEEEECCCCcccCEEEEEEEEeCCCcE-eEEEEEEEE
Confidence            57888887665555444444  79999999999999999999999985 557888876

>2lu7_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=99.26  E-value=1.6e-11  Score=68.79  Aligned_cols=51  Identities=16%  Similarity=0.157  Sum_probs=41.0

Q ss_pred             cccCeEcCcCccceEEecCC--EEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEE
Q psy7035           2 SFSNVQLYNNISAGVIVSNQ--SLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYD   57 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~~~~~--tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~   57 (70)
                      +|||++|..+++..+..+++  +|+|.+++++|+|.|+|.|.|.     +..+.|.|.
T Consensus        30 ~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~-----~~~a~l~V~   82 (84)
T 2lu7_A           30 YKDGERLASQGRVQLEQAGARQVLRVQGARSGDAGEYLCDAPQD-----SRIFLVSVE   82 (84)
T ss_dssp             EETTEECCCCSSEEEEECSSCEEEEESSCSSTTCEEEEEECTTT-----CEEEEEEEC
T ss_pred             EECCEEccccccEEEeecCCeEEEEecCCCCcccEEEEEEECCE-----EEEEEEEEE
Confidence            68999998776655554443  7999999999999999999774     456888886

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus}

Probab=99.25  E-value=1.6e-11  Score=68.65  Aligned_cols=52  Identities=19%  Similarity=0.287  Sum_probs=41.7

Q ss_pred             cccCeEcCcCccceEEecCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEE
Q psy7035           2 SFSNVQLYNNISAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAY   56 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V   56 (70)
                      +|||+++..+.+  +.+.+++|.|.+++.+|+|.|+|.|.|..|.. +..+.|.|
T Consensus        43 ~k~g~~~~~~~~--~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~-~~~~~l~V   94 (95)
T 2ckn_A           43 LRDGVQLVESNR--TRITGEEVEVRDSIPADSGLYACVTSSPSGSD-TTYFSVNV   94 (95)
T ss_dssp             EBTTBCCCCCSS--EEECSSEEEESSCCGGGSEEEEEEEEETTEEE-EEEEEEEE
T ss_pred             EECCEecCCCCC--EEEeCCEEEECCCChHHCEEEEEEeccCCCcE-EEEEEEEE
Confidence            578888875543  34568899999999999999999999999974 44677766

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A

Probab=99.25  E-value=1.8e-11  Score=76.62  Aligned_cols=48  Identities=8%  Similarity=0.075  Sum_probs=40.0

Q ss_pred             cceEEecCCEEEEcccCCCCCeeeEEEeEeCCCcccc-eeEEEEEEeCC
Q psy7035          13 SAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQS-NAQKTAYDIGL   60 (70)
Q Consensus        13 ~~~~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s-~~~~L~V~~~p   60 (70)
                      .+..+..+|+|+|.+++++|+|.|+|.|.|..|...+ ..+.|.|+..+
T Consensus        58 ~R~~~~~ngsL~I~~v~~~DsG~Y~c~~~n~~g~~~~~~~~~L~V~~~~  106 (182)
T 1hnf_A           58 DTYKLFKNGTLKIKHLKTDDQDIYKVSIYDTKGKNVLEKIFDLKIQERV  106 (182)
T ss_dssp             TTEEECTTSCEEECSCCGGGCEEEEEEEEETTSCEEEEEEEEEEEECCC
T ss_pred             CeEEECCCCCEEECCCChhhCEEEEEEEEeCCCceeEEEEEEEEEcCcC
Confidence            4455668999999999999999999999999887643 57889998543

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3

Probab=99.25  E-value=2.1e-11  Score=74.86  Aligned_cols=49  Identities=20%  Similarity=0.215  Sum_probs=40.6

Q ss_pred             cceEEecCCEEEEcccCCCCCeeeEEEeEeCCCcc-cceeEEEEEEeCCC
Q psy7035          13 SAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDG-QSNAQKTAYDIGLG   61 (70)
Q Consensus        13 ~~~~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~-~s~~~~L~V~~~p~   61 (70)
                      .+..+..+++|.|.+++++|+|.|+|.|.|..|.. .+..+.|.|...+.
T Consensus        53 ~r~~~~~~gsL~I~~v~~~D~G~Y~C~~~n~~g~~~~~~~~~l~V~~~~~  102 (176)
T 1hng_A           53 GAFEILANGDLKIKNLTRDDSGTYNVTVYSTNGTRILNKALDLRILEMVS  102 (176)
T ss_dssp             TTEEECTTSCEEESSCCGGGCEEEEEEEEETTCCEEEEEEEEEEEECCCC
T ss_pred             CeEEECCCCcEEEcccccccCEEEEEEEEeCCCCEEEEEEEEEEEeCCCC
Confidence            34445678899999999999999999999999986 56678999986543

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4

Probab=99.24  E-value=1.8e-11  Score=68.08  Aligned_cols=55  Identities=13%  Similarity=0.053  Sum_probs=43.3

Q ss_pred             cccCeEcCcCccceEEe-cCC--EEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEE
Q psy7035           2 SFSNVQLYNNISAGVIV-SNQ--SLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYD   57 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~~-~~~--tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~   57 (70)
                      +|||+++..+.+..+.. .++  +|.|.+++.+|+|.|+|.|.|..|...+ .+.|.|.
T Consensus        40 ~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~-~~~l~V~   97 (99)
T 1g1c_A           40 YKNGVKIERSDRIYWYWPEDNVCELVIRDVTGEDSASIMVKAINIAGETSS-HAFLLVQ   97 (99)
T ss_dssp             EETTEECCCCSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEEEEE-EEEEEEE
T ss_pred             EECCEECCCCCCEEEEEcCCCEEEEEECCCCcCCCEEEEEEEEECCCcEEE-EEEEEEe
Confidence            57888887655444332 333  7999999999999999999999998755 6788886

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.24  E-value=1.4e-11  Score=69.55  Aligned_cols=56  Identities=21%  Similarity=0.279  Sum_probs=44.1

Q ss_pred             cccCeEcCcCccceEEecCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeCC
Q psy7035           2 SFSNVQLYNNISAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGL   60 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~p   60 (70)
                      +|||.++..+.+  +.+.+++|.|.+++.+|+|.|+|.|.|..|.. +..+.|.|...|
T Consensus        37 ~k~g~~~~~~~~--~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~-~~~~~l~V~~~~   92 (99)
T 2cr3_A           37 LRDGVQLAESNR--TRITGEEVEVQDSVPADSGLYACVTSSPSGSD-TTYFSVNVSDAL   92 (99)
T ss_dssp             EESSSBCCCCSS--EEECSSEEEETTCCTTTCEEEEEEEEETTEEE-EEEEEECBCSCC
T ss_pred             EECCEECCCCCc--EEEECCEEEEccCCHHHCEEEEEEEEeCCceE-EEEEEEEEecCC
Confidence            577877765543  33457899999999999999999999999975 557888887544

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A

Probab=99.24  E-value=2.7e-11  Score=73.13  Aligned_cols=60  Identities=13%  Similarity=0.106  Sum_probs=45.7

Q ss_pred             cccCeEcCcCccceEEec-C--CEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeCCCC
Q psy7035           2 SFSNVQLYNNISAGVIVS-N--QSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGLGI   62 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~~~-~--~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~p~~   62 (70)
                      +|||+++..+.+..+... +  .+|+|.+++.+|+|.|+|.|.|..|.. +..+.|.|...|..
T Consensus        76 ~k~g~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~-~~~~~l~V~~~p~~  138 (154)
T 1fhg_A           76 FKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEA-TCTAELLVETMGKE  138 (154)
T ss_dssp             EETTEECCCSSSEEEEECTTCEEEEEESSCCGGGCEEEEEEEEETTEEE-EEEEEEEEECC---
T ss_pred             EECCEECCCCCcEEEEECCCCeEEEEECCCChhcCEEEEEEEEECCCeE-EEEEEEEEeCcCcC
Confidence            578888876655444432 2  389999999999999999999999985 45789999977654

>2qsq_A Carcinoembryonic antigen-related cell adhesion MO; glycoprotein, GPI-anchor, immunoglobulin DOMA lipoprotein, membrane; 1.95A {Homo sapiens} PDB: 2qst_A 2ver_N* 2gk2_A

Probab=99.23  E-value=2.5e-11  Score=71.38  Aligned_cols=48  Identities=21%  Similarity=0.189  Sum_probs=41.2

Q ss_pred             ccceEEecCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeC
Q psy7035          12 ISAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIG   59 (70)
Q Consensus        12 ~~~~~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~   59 (70)
                      ..|..++.||+|.|++|+++|+|.|+|.+.|..+...+..+.|.|...
T Consensus        63 ~gR~~~~~ngSL~I~nvt~~D~G~Ytc~v~~~~~~~~~~~~~L~V~~~  110 (111)
T 2qsq_A           63 SGREIIYPNASLLIQNIIQNDAGFYTLHVIKSDLVNEEATGQFRVYPE  110 (111)
T ss_dssp             CSCEEECTTSCEEECSCCGGGCEEEEEEEEETTSCCEEEEEEEEEECC
T ss_pred             CCcEEEecCCcEEEccCcccCCeEEEEEEEeCCCcEEEEEEEEEEecC
Confidence            346677899999999999999999999999998766677899999743

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.22  E-value=2.5e-11  Score=69.51  Aligned_cols=55  Identities=9%  Similarity=0.025  Sum_probs=42.9

Q ss_pred             cccCeEcCcCccceEEecCC--EEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeCCC
Q psy7035           2 SFSNVQLYNNISAGVIVSNQ--SLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGLG   61 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~~~~~--tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~p~   61 (70)
                      +|||++|..+.+..+..+++  +|+|.+++.+|+|.|+|.|.|.     +..+.|.|...|.
T Consensus        44 ~k~g~~i~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~~-----~~~a~L~V~~~p~  100 (104)
T 2eny_A           44 TVGGKTVGSSSRFQATRQGRKYILVVREAAPSDAGEVVFSVRGL-----TSKASLIVRERSG  100 (104)
T ss_dssp             BSSSSBCSBCSSCEEEEETTEEEEEECSCCTTTCSCEEEEETTE-----EEEECEEEECCCS
T ss_pred             EECCEECCCCCCEEEEEcCCEEEEEECCCCHHHCEEEEEEECCe-----eEEEEEEEeCCCc
Confidence            68999988766555544433  7999999999999999999763     4578999995553

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A

Probab=99.21  E-value=1.5e-11  Score=70.45  Aligned_cols=55  Identities=16%  Similarity=0.218  Sum_probs=43.2

Q ss_pred             cccCeEcCcCccceEEec--CCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEE
Q psy7035           2 SFSNVQLYNNISAGVIVS--NQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYD   57 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~~~--~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~   57 (70)
                      ++||+++..+.+..+...  +++|.|.+++.+|+|.|+|.|.|..|.. +..+.|.|+
T Consensus        49 ~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~-~~~~~l~V~  105 (106)
T 1nct_A           49 LRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSVVVENSEGKQ-EAEFTLTIQ  105 (106)
T ss_dssp             CSSSSCCTTCSSEEEEECSSEEEEEECCCCSSCCSEEEECCBCSSCBC-CEEEEEEEC
T ss_pred             EECCEECCCCCCEEEEECCCEEEEEECcCCchhCEEEEEEEEeCCCeE-EEEEEEEEE
Confidence            577888776554444332  4689999999999999999999999984 557888885

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A

Probab=99.21  E-value=1.1e-11  Score=68.91  Aligned_cols=55  Identities=16%  Similarity=0.232  Sum_probs=39.4

Q ss_pred             cccC--eEcCcCccceEEecCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEE
Q psy7035           2 SFSN--VQLYNNISAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYD   57 (70)
Q Consensus         2 ~~ng--~~l~~~~~~~~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~   57 (70)
                      +|||  .++..+..........+|.|.+++++|+|.|+|.|+|..|.. +..+.|.|+
T Consensus        37 ~k~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~-~~~~~l~V~   93 (93)
T 1wit_A           37 TVGDSGAALAPELLVDAKSSTTSIFFPSAKRADSGNYKLKVKNELGED-EAIFEVIVQ   93 (93)
T ss_dssp             ECSTTTCBCSTTSEEEEETTEEEEECTTBCGGGCEEEEEEEEETTEEE-EEEEEEEEC
T ss_pred             EECCCCcccCCcEEEEecCCEEEEEECCCChhcCEEEEEEEEcCCCeE-EEEEEEEEC
Confidence            4666  666544222222234689999999999999999999999964 456777763

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A

Probab=99.21  E-value=2.7e-11  Score=68.60  Aligned_cols=51  Identities=16%  Similarity=0.206  Sum_probs=40.7

Q ss_pred             cccCeEcCcCccceEEecCC--EEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEE
Q psy7035           2 SFSNVQLYNNISAGVIVSNQ--SLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYD   57 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~~~~~--tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~   57 (70)
                      +|||++|..+.+..+..+++  +|+|.+++.+|+|.|+|.|.|.     +..+.|.|.
T Consensus        39 ~k~g~~i~~~~~~~i~~~g~~~~L~I~~v~~~D~G~Y~C~a~n~-----~~sa~L~V~   91 (93)
T 1waa_A           39 KLKGQPLAASPDCEIIEDGKKHILILHNCQLGMTGEVSFQAANT-----KSAANLKVK   91 (93)
T ss_dssp             EETTEECCCBTTEEEEEETTEEEEEECSCCGGGCEEEEEEETTE-----EEEEEEEEE
T ss_pred             EECCEECcCCCCEEEEEECCEEEEEECCCChhhCEEEEEEECCC-----cEEEEEEEE
Confidence            68999998766555444443  8999999999999999999995     346788886

>4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R

Probab=99.21  E-value=2.7e-11  Score=78.73  Aligned_cols=55  Identities=15%  Similarity=0.123  Sum_probs=43.9

Q ss_pred             cccCeEcCcCccceEEecCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeCCC
Q psy7035           2 SFSNVQLYNNISAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGLG   61 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~p~   61 (70)
                      +|||.++...    ....+++|+|.+++++|+|.|+|.|+|..|.. +..+.|.|.++|.
T Consensus       253 ~~~~~~l~~~----~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~-~~~~~l~V~~~PP  307 (313)
T 4fqp_A          253 STTMGPLPPF----AVAQGAQLLIRPVDKPINTTLICNVTNALGAR-QAELTVQVKEGPP  307 (313)
T ss_dssp             EETTBSCCTT----EEEETTEEEECCCSSCCEEEEEEEEECSSCEE-EEEEEEEEECCC-
T ss_pred             EECCEECCCc----eEEeCCEEEECcCChhhCEEEEEEEEeCCCcE-EEEEEEEEEeCCC
Confidence            4566666533    23467899999999999999999999999986 5578999998764

>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus}

Probab=99.20  E-value=2e-11  Score=68.26  Aligned_cols=38  Identities=32%  Similarity=0.357  Sum_probs=34.6

Q ss_pred             CCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEE
Q psy7035          20 NQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYD   57 (70)
Q Consensus        20 ~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~   57 (70)
                      +++|.|.+++.+|+|.|+|.|.|..|...+..+.|.|+
T Consensus        75 ~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~s~~~~l~V~  112 (112)
T 3so5_A           75 TTILRLRNVEFTSEGXYQCVISNHFGSSYSVXAXLTIN  112 (112)
T ss_dssp             EEEEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEC
T ss_pred             ceEEEEeccccccCCeEEEEEEeCCCcEEEeEEEEEeC
Confidence            47999999999999999999999999877888999873

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.19  E-value=5.7e-11  Score=67.12  Aligned_cols=55  Identities=15%  Similarity=0.257  Sum_probs=42.1

Q ss_pred             cccCeEcCcCcc--ceEEecC--CEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeCCC
Q psy7035           2 SFSNVQLYNNIS--AGVIVSN--QSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGLG   61 (70)
Q Consensus         2 ~~ng~~l~~~~~--~~~~~~~--~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~p~   61 (70)
                      +|||+++..+.+  ..+..++  .+|+|.+++.+|+|.|+|.|.|     .+..+.|.|...|.
T Consensus        41 ~k~g~~l~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n-----~~~~~~l~V~~~p~   99 (103)
T 1x44_A           41 FKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKADAAEYSVMTTG-----GQSSAKLSVDLKSG   99 (103)
T ss_dssp             EETTEECCCSTTCSEEEEEETTEEEEEEEEECTTTCSEEEEEETT-----EEEEEEEEEECCCS
T ss_pred             EECCEECCCCCceEEEEEEcCCEEEEEECCCCcccCEEEEEEECC-----CcEEEEEEEeCCCC
Confidence            578888876652  2333332  5899999999999999999998     36678999985554

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens}

Probab=99.19  E-value=3.7e-11  Score=66.58  Aligned_cols=49  Identities=16%  Similarity=0.217  Sum_probs=40.4

Q ss_pred             cccCeEcCcCccceEEecCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEE
Q psy7035           2 SFSNVQLYNNISAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYD   57 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~   57 (70)
                      +|||+++...       .+++|.|.+++.+|+|.|+|.|.|..|...+..+.|.|.
T Consensus        38 ~~~~~~~~~~-------~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~   86 (91)
T 3bfo_A           38 FKNELPLTHE-------TKKLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIID   86 (91)
T ss_dssp             EETTEECTTC-------CSSEEEESSCCGGGCEEEEEEEECSSCEEECCCEEEEEC
T ss_pred             EcCCeeCCcC-------CCCeEEECCCCHHhCEEEEEEEEcCCCCEEeeeEEEEEe
Confidence            4566665433       246899999999999999999999999888888999985

>2lvc_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=99.19  E-value=2e-11  Score=69.23  Aligned_cols=50  Identities=12%  Similarity=0.135  Sum_probs=39.4

Q ss_pred             cccCeEcCcCccceEEecCC--EEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEE
Q psy7035           2 SFSNVQLYNNISAGVIVSNQ--SLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAY   56 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~~~~~--tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V   56 (70)
                      +|||++|..+++..+..+++  +|+|.+++.+|+|.|+|.|.|.     +..+.|+|
T Consensus        40 ~k~g~~i~~~~~~~i~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~-----~~~~~ltV   91 (91)
T 2lvc_A           40 YKDGQEVEESDFVVLENEGPHRRLVLPATQPSDGGEFQCVAGDE-----CAYFTVTI   91 (91)
T ss_dssp             EETTSCCCCCSSCEEEEETTEEEEEESSCCGGGCSEEEEECSSC-----EEEEEEEC
T ss_pred             EECCEEeeeeeeeeEEecCCeEEEEeCCCChhhcEEEEEEEcce-----EEEEEEEC
Confidence            68999998776666555544  7999999999999999999885     44566654

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A

Probab=99.18  E-value=4.9e-11  Score=66.55  Aligned_cols=54  Identities=20%  Similarity=0.242  Sum_probs=41.1

Q ss_pred             cccCeEcCcCccc---eEEecCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEE
Q psy7035           2 SFSNVQLYNNISA---GVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAY   56 (70)
Q Consensus         2 ~~ng~~l~~~~~~---~~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V   56 (70)
                      ++||.++..+.+.   .....+++|.|.+++.+|+|.|+|.|.|..|.. +..+.|.|
T Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~-~~~~~l~V   99 (100)
T 3caf_A           43 LKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSI-NHTYHLDV   99 (100)
T ss_dssp             EETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEEE-EEEEEEEE
T ss_pred             EECCEEcccccccccEEEecCeEEEEEccCCcCCCEEEEEEEEeCCCEE-EEEEEEEE
Confidence            5788887654332   233345699999999999999999999999985 45677776

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A

Probab=99.16  E-value=3.7e-11  Score=74.42  Aligned_cols=60  Identities=15%  Similarity=0.114  Sum_probs=43.9

Q ss_pred             cccCeEcCcCc--cceEEe---cCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeCCC
Q psy7035           2 SFSNVQLYNNI--SAGVIV---SNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGLG   61 (70)
Q Consensus         2 ~~ng~~l~~~~--~~~~~~---~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~p~   61 (70)
                      ++||.++....  .+....   ..++|.|.+++.+|+|.|+|.|+|..|...+.++.|.|..+|-
T Consensus       143 ~~~g~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~s~~a~l~~~~~~~  207 (212)
T 2yd6_A          143 FKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQGKYECVATNSAGTRYSAPANLYVRGTKH  207 (212)
T ss_dssp             EETTEEC------CCEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC---
T ss_pred             EECCccccCcCCCceEEEEecCCeEEEEEcCCCcccCEEEEEEEECCCCccccccccEEEEeccc
Confidence            57788876431  122222   2378999999999999999999999999999999999997653

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens}

Probab=99.15  E-value=8.4e-11  Score=67.49  Aligned_cols=58  Identities=21%  Similarity=0.271  Sum_probs=43.7

Q ss_pred             cccCeEcCcCc----cceEEecCCEEEEcc-----cCCCCCeeeEEEeEeCCCcccceeEEEEEEeC
Q psy7035           2 SFSNVQLYNNI----SAGVIVSNQSLVLQN-----VSRARAGHYTCVGSNGEGDGQSNAQKTAYDIG   59 (70)
Q Consensus         2 ~~ng~~l~~~~----~~~~~~~~~tL~i~~-----v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~   59 (70)
                      ++||.++..+.    .......++++.+..     ++++|+|.|+|.|+|..|...+..+.|.|.+.
T Consensus        44 ~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~D~G~Y~C~a~N~~G~~~s~~~~l~~~~~  110 (117)
T 2v9t_A           44 YKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAAA  110 (117)
T ss_dssp             EETTEECCCTTTCSSCSEEECTTSCEEESSCCCBTTBCSSCEEEEEEEEETTEEEECCCEEEEEC--
T ss_pred             EECCEeccccCCCCcceeEEecCCcEEEEEEEeCCCCcCcCEEEEEEEEeCccceEeeeEEEEhhhh
Confidence            57788876432    123455677776664     47999999999999999999999999999753

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4

Probab=99.15  E-value=4.2e-11  Score=72.08  Aligned_cols=61  Identities=21%  Similarity=0.107  Sum_probs=49.1

Q ss_pred             cccCeEcCcCccceEEecC----CEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeCCCC
Q psy7035           2 SFSNVQLYNNISAGVIVSN----QSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGLGI   62 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~~~~----~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~p~~   62 (70)
                      ++||.++....+..+...+    ++|.|.+++.+|+|.|+|.|.|..|...+..+.|.|.+.|..
T Consensus        37 ~k~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~  101 (182)
T 1rhf_A           37 VKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDGGETEISQPVWLTVEGVPFF  101 (182)
T ss_dssp             EETTEECCSSEEEEEEEETTEEEEEEEESSCCGGGCEEEEEEESSCTTCEECCCEEEEEECSCEE
T ss_pred             EECCeecCCCCceEEEecCCCceEEEEEeecCcccCeEEEEEEEcCCCcEEEEEEEEEEecCCeE
Confidence            4788888765544444433    689999999999999999999998887888999999987753

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}

Probab=99.14  E-value=1.3e-11  Score=77.95  Aligned_cols=54  Identities=15%  Similarity=0.144  Sum_probs=40.6

Q ss_pred             cccCeEcCcCccceEEecCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEE
Q psy7035           2 SFSNVQLYNNISAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAY   56 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V   56 (70)
                      +|||++|..+.+........+|+|.+++++|+|.|+|.|+|..|...+ .+.|.+
T Consensus       152 ~k~g~~l~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~-~~~L~~  205 (207)
T 3rbs_A          152 YKDEREISVDEKHDFKDGICTLLITEFSKKDAGIYEVILKDDRGKDKS-RLKLVD  205 (207)
T ss_dssp             EETTEEECCCCCCCCSSEEEEEEETTCCGGGCEEEEEEEEETTEEEEE-EEEECC
T ss_pred             EECCEECCCCCceEcCCCEEEEEECCCCcccCEEEEEEEEcCCCEEEE-EEEEec
Confidence            588999876544322112347999999999999999999999998755 566654

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.13  E-value=1.2e-10  Score=65.98  Aligned_cols=53  Identities=19%  Similarity=0.186  Sum_probs=40.5

Q ss_pred             cccCeEcCcCccceEEecC--CEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEE
Q psy7035           2 SFSNVQLYNNISAGVIVSN--QSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYD   57 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~~~~--~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~   57 (70)
                      +|||+++..+.+..+..++  .+|+|.+++.+|+|.|+|.|.|.   ..+..+.|.|.
T Consensus        42 ~k~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~---~~~~~~~l~V~   96 (106)
T 2dlt_A           42 YKNGVEVRPSKRITISHVGRFHKLVIDDVRPEDEGDYTFVPDGY---ALSLSAKLNFL   96 (106)
T ss_dssp             EESSCBCCCCSSCEEEEETTEEEEEESSCCTTTCSCEEEEEETS---CCCCCBCEEEE
T ss_pred             EcCCEECcCCCCEEEEEeCCEEEEEECCCCcCCCEEEEEEEccC---CceEEEEEEEE
Confidence            5788888766555544333  38999999999999999999998   23446677776

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A*

Probab=99.13  E-value=1e-10  Score=70.76  Aligned_cols=54  Identities=17%  Similarity=0.132  Sum_probs=43.7

Q ss_pred             cccCeEcCcCccceEEecCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeCCC
Q psy7035           2 SFSNVQLYNNISAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGLG   61 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~p~   61 (70)
                      ++||+++...      ..+++|.|.+++.+|+|.|+|.|.|..|...+.++.|.|.+.|.
T Consensus       121 ~~~g~~~~~~------~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~p~  174 (176)
T 1f2q_A          121 YKDGEALKYW------YENHNISITNATVEDSGTYYCTGKVWQLDYESEPLNITVIKAPR  174 (176)
T ss_dssp             EETTEECCSC------CCSSEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEECSCC
T ss_pred             EECCEEEeee------cCCCeEEECCCCcccCEEEEEEEEeCCcceEecCEEEEEecCCC
Confidence            4566665322      13679999999999999999999998887788889999997764

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*

Probab=99.13  E-value=7.6e-11  Score=73.83  Aligned_cols=48  Identities=19%  Similarity=0.356  Sum_probs=36.7

Q ss_pred             cCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeCCCCCCCC
Q psy7035          19 SNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGLGIPAEP   66 (70)
Q Consensus        19 ~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~p~~~~~p   66 (70)
                      .+++|.|.+++.+|+|.|+|.|.|..+...|..+.|.|...|..|..+
T Consensus       135 ~~~~L~i~~v~~~D~G~Y~C~a~n~~~~~~s~~~~l~V~~~~~~P~i~  182 (204)
T 3sgj_C          135 HNSDFYIPKATLKDSGSYFCRGLVGSKNVSSETVQITITQGLAVSTIS  182 (204)
T ss_dssp             ECCCEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC--------
T ss_pred             CCceEEECcCCcccCEEEEEEEEeCCCceecCcEEEEEeCcCCCCccc
Confidence            467999999999999999999999777778889999999777665544

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.13  E-value=5e-11  Score=66.55  Aligned_cols=54  Identities=17%  Similarity=0.198  Sum_probs=40.3

Q ss_pred             cccCeEcCcCccceEEecCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEE
Q psy7035           2 SFSNVQLYNNISAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYD   57 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~   57 (70)
                      ++||+++.... ......+.+|.|.+++.+|+|.|+|.|.|..|.. +..+.|.|+
T Consensus        46 ~~~g~~~~~~~-~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~-~~~~~l~V~   99 (99)
T 2yr3_A           46 LLNGQPIQYAR-STCEAGVAELHIQDALPEDHGTYTCLAENALGQV-SCSAWVTVH   99 (99)
T ss_dssp             EESSSBCSSCC-CEEETTEEEEEECSCCTTCCBCEEEEEECSSCEE-EEECCEEEC
T ss_pred             EECCEECcccc-eEeeCCeEEEEECCCChhhCEEEEEEEEECCCeE-EEEEEEEEC
Confidence            46777776443 2233344689999999999999999999999985 556777763

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A

Probab=99.12  E-value=9.3e-11  Score=82.65  Aligned_cols=61  Identities=21%  Similarity=0.171  Sum_probs=52.0

Q ss_pred             cccCeEcCcCccceEEecCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeCCCC
Q psy7035           2 SFSNVQLYNNISAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGLGI   62 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~p~~   62 (70)
                      ++||+++..+.+..+..++++|+|.+++.+|+|.|+|.|.|..|...+.++.|.|.+.|..
T Consensus       501 ~~~g~~l~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~~p~~  561 (642)
T 1e07_A          501 WVNGQSLPVSPRLQLSNGNRTLTLFNVTRNDARAYVCGIQNSVSANRSDPVTLDVLYGPDT  561 (642)
T ss_pred             EECCEeCCCCCcEEEcCCCcEEEEeecChhcCceEEEEeEcCCCCccCCCEEEEEEeCCCc
Confidence            5788888776655555567899999999999999999999999988888899999987753

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A

Probab=99.11  E-value=1.5e-10  Score=81.65  Aligned_cols=61  Identities=21%  Similarity=0.148  Sum_probs=52.3

Q ss_pred             cccCeEcCcCccceEEecCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeCCCC
Q psy7035           2 SFSNVQLYNNISAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGLGI   62 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~p~~   62 (70)
                      ++||+++..+.+..+...+++|+|.+++++|+|.|+|.|.|..|...+.++.|.|.++|..
T Consensus       323 ~~~g~~l~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~~p~~  383 (642)
T 1e07_A          323 WVNNQSLPVSPRLQLSNDNRTLTLLSVTRNDVGPYECGIQNELSVDHSDPVILNVLYGPDD  383 (642)
T ss_pred             EECCccCCCcCCEEEeCCCCEEEEeccCcccCeeEEEEEeCCCCCcceeeEEEEEEcCCCC
Confidence            5788888766555555567899999999999999999999999988888999999988764

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}

Probab=99.11  E-value=3.3e-11  Score=74.03  Aligned_cols=59  Identities=10%  Similarity=0.101  Sum_probs=43.5

Q ss_pred             cccCeEcCcCccceEE-ecCCEEEEcccCCCCCeeeEEEeEeCCC-cccceeEEEEEEeCC
Q psy7035           2 SFSNVQLYNNISAGVI-VSNQSLVLQNVSRARAGHYTCVGSNGEG-DGQSNAQKTAYDIGL   60 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~-~~~~tL~i~~v~~~D~G~Y~C~a~N~~G-~~~s~~~~L~V~~~p   60 (70)
                      +|||.++......... ..+++|.|.+++++|+|.|+|.|.|..| ...+..+.|.|.+.+
T Consensus        38 ~k~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~~~l~V~~~~   98 (196)
T 3p2t_A           38 DKEESPAPWDRQNPLEPKNKARFSIPSMTEDYAGRYRCYYRSPVGWSQPSDPLELVMTGAY   98 (196)
T ss_dssp             EETTSCSCSEEECCCSSSSEEEEEESSCCGGGCEEEEEEEEETTEEBCCCCCEEEEEECSS
T ss_pred             EECCCCCcccccccccCCceEEEEeccCCcccCceEEEEEeCCCcccCCCccEEEEecCCC
Confidence            5677766542211111 2457899999999999999999999998 466788999998543

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens}

Probab=99.11  E-value=9.3e-11  Score=72.74  Aligned_cols=61  Identities=20%  Similarity=0.059  Sum_probs=46.3

Q ss_pred             cccCeEcCcCcc-ceEEe---cCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeCCCCC
Q psy7035           2 SFSNVQLYNNIS-AGVIV---SNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGLGIP   63 (70)
Q Consensus         2 ~~ng~~l~~~~~-~~~~~---~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~p~~~   63 (70)
                      +|||+++..+.. +..+.   .+++|.|.+++++|+|.|+|.|.|..|.. +..+.|.|...|..|
T Consensus        53 ~~~g~~l~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~v~~~P~~p  117 (215)
T 3mtr_A           53 FRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQE-SLEFILVQADTPSSP  117 (215)
T ss_dssp             EETTEESSCSSSCSEEEEEETTEEEEEECCCSGGGCEEEEEEEECSSCEE-EEEEEEEECCCCCCC
T ss_pred             EECCeECCCCCCccEEEecCCCeeEEEEecCChhhCeEEEEEEEECCCce-EEEEEEEECCCCCCC
Confidence            578888875432 22222   25689999999999999999999999986 457889998655544

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}

Probab=99.11  E-value=6.9e-11  Score=71.93  Aligned_cols=60  Identities=15%  Similarity=0.022  Sum_probs=46.9

Q ss_pred             cccCeEcCcCcc--ceEEec---------CCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeCCC
Q psy7035           2 SFSNVQLYNNIS--AGVIVS---------NQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGLG   61 (70)
Q Consensus         2 ~~ng~~l~~~~~--~~~~~~---------~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~p~   61 (70)
                      ++||+++.....  ..+...         +++|.|.+++.+|+|.|+|.|.|..|...+..+.|.|.+.|.
T Consensus        38 ~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~  108 (195)
T 2c5d_C           38 LRDGQILELADSTQTQVPLGEDEQDDWIVVSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEGLPY  108 (195)
T ss_dssp             EETTEECCSCEEEEEEEECSSSTTSEEEEEEEEEESSCCSTTCEEEEEEEEETTEEEECCCEEEEECCSCE
T ss_pred             EECCEEcccCCCCceEEEEccccccceeeccEEEEEeccccCCcEEEEEEEeCCCceecccEEEEEecCCe
Confidence            578888865532  222222         368999999999999999999999888778789999987764

>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.10  E-value=1.7e-10  Score=64.82  Aligned_cols=54  Identities=19%  Similarity=0.204  Sum_probs=40.9

Q ss_pred             cccCeEcCcCccceEEecC--CEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeCC
Q psy7035           2 SFSNVQLYNNISAGVIVSN--QSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGL   60 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~~~~--~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~p   60 (70)
                      +|||+++..+.+..+...+  .+|+|.+++.+|+|.|+|.|.|.     +..+.|.|..+|
T Consensus        45 ~k~g~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~~~-----~~~~~l~V~~p~  100 (102)
T 2eo1_A           45 YKDGKKLSSSSKVRVEAVGCTRRLVVQQAGQAEAGEYSCEAGGQ-----QLSFRLQVAGQC  100 (102)
T ss_dssp             EETTEECCCCSSEEEEEETTEEEEEETTCCTTTCSCEEEEETTE-----ECCEEEEEESCC
T ss_pred             EECCEECCCCCCEEEEEcCCEEEEEECCCCcccCEEEEEEcCCC-----cEEEEEEEeCCC
Confidence            5788888766554444333  48999999999999999999653     446889998543

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}

Probab=99.10  E-value=1.9e-10  Score=69.01  Aligned_cols=55  Identities=18%  Similarity=0.200  Sum_probs=44.6

Q ss_pred             cccCeEcCcCccceEEecCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEE
Q psy7035           2 SFSNVQLYNNISAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYD   57 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~   57 (70)
                      ++||.++..+.+..+...+++|+|.+++.+|+|.|+|.|+|..|... ..+.|.|.
T Consensus       133 ~~~g~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~-~~~~l~V~  187 (189)
T 2v5t_A          133 FRNGKLIEENEKYILKGSNTELTVRNIINSDGGPYVCRATNKAGEDE-KQAFLQVF  187 (189)
T ss_dssp             EETTEECCCSSSEEEETTTTEEEECSCCGGGCEEEEEEEEETTEEEE-EEEEEEEE
T ss_pred             EECCEECcCCCcEEEecCCCEEEEcCCChhhCeeEEEEEEeCCCcee-EEEEEEEE
Confidence            57888887665554545678999999999999999999999999765 46778775

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*

Probab=99.10  E-value=7.6e-11  Score=79.03  Aligned_cols=61  Identities=20%  Similarity=0.278  Sum_probs=48.1

Q ss_pred             cccCeEcCcCccceEEecCCEEEEccc-CCCCCeeeEEEeEeCCCcccceeEEEEEEeCCCC
Q psy7035           2 SFSNVQLYNNISAGVIVSNQSLVLQNV-SRARAGHYTCVGSNGEGDGQSNAQKTAYDIGLGI   62 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~~~~~tL~i~~v-~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~p~~   62 (70)
                      +|||.+|.......+.+.+++|.|.++ +.+|+|.|+|.|+|..|...+..+.|.|.+.+..
T Consensus        43 ~k~g~~l~~~~~~~~~~~~g~l~i~~~~~~~D~G~Y~C~A~N~~G~~~s~~~~l~v~~~~~~  104 (384)
T 3kld_A           43 KLNGTDVDIGMDFRYSVVDGSLLINNPNKTQDAGTYQCIATNSFGTIVSREAKLQFAYLENF  104 (384)
T ss_dssp             EETTEECCC----CEEEETTEEEEESCCHHHHCEEEEEEEEETTEEEECCCEEEEEEEECCC
T ss_pred             EECCEECcCCCCccEEEECCEEEEcCCCCcccCEEEEEEEEcCcccEEecceEEEEeccccc
Confidence            588999875444445567889999887 7799999999999999998888889999876654

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A

Probab=99.10  E-value=1.3e-10  Score=76.77  Aligned_cols=62  Identities=19%  Similarity=0.292  Sum_probs=50.9

Q ss_pred             cccCeEcCcCccceEEecCCEEEEcccCC-CCCeeeEEEeEeCCCcccceeEEEEEEeCCCCC
Q psy7035           2 SFSNVQLYNNISAGVIVSNQSLVLQNVSR-ARAGHYTCVGSNGEGDGQSNAQKTAYDIGLGIP   63 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~~~~~tL~i~~v~~-~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~p~~~   63 (70)
                      +|||.++.......+.+.+++|+|.++++ +|+|.|+|.|.|..|...+..+.|.|.+.|..+
T Consensus        42 ~k~g~~~~~~~~~~~~~~~~~L~i~~~~~~~D~G~Y~C~a~n~~g~~~s~~~~l~v~~~~~~~  104 (382)
T 1cs6_A           42 KMNGTELKMGPDSRYRLVAGDLVISNPVKAKDAGSYQCVATNARGTVVSREASLRFGFLQEFS  104 (382)
T ss_dssp             EETTEECCCSTTSSEEEETTEEEEESCCHHHHCEEEEEEEEETTEEEECCCEEEEEEEECCCC
T ss_pred             EECCEECCcCCCccEEeeCCeEEEecccccccCEEEEEEEEcCCcEEEecceEEEeecccccc
Confidence            57888887543334456789999999998 999999999999999888888999998877543

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*

Probab=99.10  E-value=2.6e-10  Score=70.23  Aligned_cols=56  Identities=27%  Similarity=0.337  Sum_probs=44.2

Q ss_pred             cccCeEcCc-------CccceEEecCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEE
Q psy7035           2 SFSNVQLYN-------NISAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYD   57 (70)
Q Consensus         2 ~~ng~~l~~-------~~~~~~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~   57 (70)
                      ++||.++..       ...+.....+++|.|.+++.+|+|.|+|.|+|..|...+..+.|.+.
T Consensus       144 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~~lv~~  206 (217)
T 2vr9_A          144 IKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNYKCIAQNLVGTRESSYAKLIVQ  206 (217)
T ss_dssp             EETTEEECCCCCC---CCCSEEEETTTEEEESSCCSTTCEEEEEEEEETTEEEECCCEEEEEC
T ss_pred             EECCcCCCcccccccccCCcEEecCCCcEEEeeCCHHHCeEEEEEEEcccceeccccEEEEEE
Confidence            467777762       22233445788999999999999999999999999988877777664

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*

Probab=99.10  E-value=4.2e-11  Score=75.13  Aligned_cols=56  Identities=9%  Similarity=0.136  Sum_probs=44.4

Q ss_pred             cccCeEcCcCc-cceEEecCCEEEEccc-CCCCCeeeEEEeEeCCCcccceeEEEEEE
Q psy7035           2 SFSNVQLYNNI-SAGVIVSNQSLVLQNV-SRARAGHYTCVGSNGEGDGQSNAQKTAYD   57 (70)
Q Consensus         2 ~~ng~~l~~~~-~~~~~~~~~tL~i~~v-~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~   57 (70)
                      +|||.++..+. ...+...+++|+|.+| +.+|+|.|+|.|+|..|...+..+.|.|.
T Consensus       146 ~k~~~~l~~~~~~~~~~~~~~~L~I~~v~~~~D~G~Y~C~A~N~~g~~~s~~l~l~~~  203 (204)
T 1sy6_A          146 QHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCYPRGSKPEDANFYLYLRAR  203 (204)
T ss_dssp             EETTEEESCCTTCTTEEEETTEEEETTCCHHHHCEEEEEEETTSCGGGSSCEEEEEEC
T ss_pred             EECCEECCCccCCceEecCCCEEEEeeCCccccCEEEEEEeccCCCCceeEEEEEEEe
Confidence            57888886532 2334446899999999 99999999999999999877777777764

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}

Probab=99.09  E-value=1.5e-10  Score=73.80  Aligned_cols=58  Identities=17%  Similarity=0.187  Sum_probs=43.8

Q ss_pred             cccCeEcCcCccceEEecCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeCC
Q psy7035           2 SFSNVQLYNNISAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGL   60 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~p   60 (70)
                      ++||+++..+.+..+...+++|+|.+++.+|+|.|+|.|+|..|...+ .+.|.|..++
T Consensus       229 ~~~g~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~-~~~l~v~~~~  286 (291)
T 2wim_A          229 FRNGKLIEENEKYILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEK-QAFLQVFVQH  286 (291)
T ss_dssp             EETTEECCCTTTEEECSTTCEEEEESCCSTTCEEEEEEEEETTEEEEE-EEEEEC----
T ss_pred             EECCEECcCCccEEEcCCccEEEEeeCCcccCEEEEEEEEECCCceee-eEEEEEEEec
Confidence            578888876654444345679999999999999999999999998655 6778876443

>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus}

Probab=99.09  E-value=2.2e-10  Score=64.07  Aligned_cols=40  Identities=18%  Similarity=0.104  Sum_probs=33.8

Q ss_pred             cCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeCC
Q psy7035          19 SNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGL   60 (70)
Q Consensus        19 ~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~p   60 (70)
                      .+.+|.|.+++.+|+|.|+|.|.| .|. .+..+.|.|...|
T Consensus        69 ~~~~L~I~~v~~~D~G~Y~C~~~n-~~~-~~~~~~L~V~~~P  108 (108)
T 3m45_A           69 HELSISVSDVSLSDEGQYTCSLFT-MPV-KTSKAYLTVLGVP  108 (108)
T ss_dssp             SEEEEEECSCCGGGCEEEEEEECS-SSC-EEEEEEEEEECCC
T ss_pred             CcEEEEECCCChhHCeEEEEEEEc-CCC-cEEEEEEEEEcCC
Confidence            356899999999999999999999 664 4668999998654

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}

Probab=99.09  E-value=2.8e-10  Score=69.53  Aligned_cols=55  Identities=16%  Similarity=0.122  Sum_probs=44.4

Q ss_pred             cccCeEcCcCccceEEecCC---EEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEE
Q psy7035           2 SFSNVQLYNNISAGVIVSNQ---SLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYD   57 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~~~~~---tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~   57 (70)
                      ++||.++..+.+..+...++   +|.|.+++++|+|.|+|.|.|..|.. +..+.|.|.
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~-~~~~~l~V~  209 (212)
T 2r15_A          152 LKNEKALAQTDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSE-TSDFTVSVF  209 (212)
T ss_dssp             EETTEEECCCSSEEEEEETTTEEEEEESSCCGGGCEEEEEEEEETTEEE-EEEEEEEEE
T ss_pred             EECCeECccCCCEEEEEcCCCEEEEEEcCcchHHCeEEEEEEEcCCCcE-EEEEEEEEE
Confidence            57888887665544444433   99999999999999999999999985 557888887

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}

Probab=99.09  E-value=1.4e-10  Score=69.95  Aligned_cols=61  Identities=16%  Similarity=0.237  Sum_probs=48.1

Q ss_pred             cccCeEcCcCccc-eEEecCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeCCCC
Q psy7035           2 SFSNVQLYNNISA-GVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGLGI   62 (70)
Q Consensus         2 ~~ng~~l~~~~~~-~~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~p~~   62 (70)
                      ++||.++.....+ .+...+.+|+|.+++.+|+|.|+|.+.|..|...+..+.|.|.+.|..
T Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~  103 (192)
T 2iep_A           42 TRNKILIKLFDTRYSIRENGQLLTILSVEDSDDGIYCCTANNGVGGAVESCGALQVKMKPKI  103 (192)
T ss_dssp             EETTEECCTTCTTEEEEGGGTEEEESSCCGGGCEEEEEEEECSSSCCEEEEEEEEEEEEEEE
T ss_pred             EECCEEccccCccEEEcCCccEEEEcCCCcccCeEEEEEEEcCCCceeEeEEEEEEEeCCcc
Confidence            5678887653333 333355689999999999999999999999987777889999987754

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X

Probab=99.08  E-value=1.3e-10  Score=67.01  Aligned_cols=44  Identities=23%  Similarity=0.286  Sum_probs=37.6

Q ss_pred             cCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeCCCCC
Q psy7035          19 SNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGLGIP   63 (70)
Q Consensus        19 ~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~p~~~   63 (70)
                      .+++|+|.+++.+|+|.|+|.|.|..|... ..+.|.|...|.+.
T Consensus        72 ~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~~-~~~~l~V~~~p~i~  115 (122)
T 3s35_X           72 FLSTLTIDGVTRSDQGLYTCAASSGLMTKK-NSTFVRVHEKPFVA  115 (122)
T ss_dssp             EEEEEEESSCCGGGCEEEEEEEECSSCEEE-EEEEEEEEEEECC-
T ss_pred             EEEEEEECCCCcccCEEEEEEEccCCCceE-EEEEEEEeccCeEE
Confidence            346899999999999999999999999865 57899999777653

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}

Probab=99.07  E-value=3.2e-10  Score=72.85  Aligned_cols=55  Identities=16%  Similarity=0.133  Sum_probs=44.6

Q ss_pred             cccCeEcCcCccceEEecCC---EEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEE
Q psy7035           2 SFSNVQLYNNISAGVIVSNQ---SLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYD   57 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~~~~~---tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~   57 (70)
                      ++||+++..+.+..+...++   +|+|.+++.+|+|.|+|.|.|..|.. +..+.|.|.
T Consensus       257 ~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~-~~~~~l~V~  314 (317)
T 2y25_A          257 LKNEKALASDDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSE-TSDFTVSVF  314 (317)
T ss_dssp             EESSSEECCCSSEEECCBTTTEEEEEEBSCCSTTCEEEEEEEEETTEEE-EEEEEEEEE
T ss_pred             EECCEeCCCCCcEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEeCCCeE-EEEEEEEEE
Confidence            57888887665544444434   89999999999999999999999986 557889987

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*

Probab=99.07  E-value=1.7e-10  Score=77.31  Aligned_cols=53  Identities=21%  Similarity=0.191  Sum_probs=44.3

Q ss_pred             cccCeEcCcCccceEEecCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEE
Q psy7035           2 SFSNVQLYNNISAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYD   57 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~   57 (70)
                      +|||+++..+.+.  .+.+++|.|.+++.+|+|.|+|.|+|..|...+ .+.|.|.
T Consensus       330 ~k~g~~l~~~~~~--~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~-~a~L~V~  382 (384)
T 3kld_A          330 LKNGDPLLTRDRI--QIEQGTLNITIVNLSDAGMYQCVAENKHGVIFS-SAELSVI  382 (384)
T ss_dssp             EETTEECCCBTTE--EEETTEEEESSCCGGGCEEEEEEEEETTEEEEE-EEEEEEC
T ss_pred             EECCEECCCCccE--EEeCCEEEEeecChhhCEEEEEEEEeCCceEEe-ceEEEEe
Confidence            5789998765443  357889999999999999999999999998755 6788885

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens}

Probab=99.06  E-value=6.5e-10  Score=63.48  Aligned_cols=53  Identities=13%  Similarity=0.181  Sum_probs=40.2

Q ss_pred             cccCeEcCcCccceEEecCC---EEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeCC
Q psy7035           2 SFSNVQLYNNISAGVIVSNQ---SLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGL   60 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~~~~~---tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~p   60 (70)
                      +|||+++..+.+..+. .++   +|.|.+++.+|+|.|+|.|    |. .+..+.|.|...|
T Consensus        52 ~k~~~~l~~~~~~~~~-~~~~~~~L~I~~v~~~D~G~Y~C~a----~~-~~~~~~l~V~~~p  107 (113)
T 2edh_A           52 WKGHETLRDGDRHSLR-QDGARCELQIRGLVAEDAGEYLCMC----GK-ERTSAMLTVRAMP  107 (113)
T ss_dssp             EESSSBCCCSSSEEEE-EETTEEEEEECSCCSTTCEEEEEEE----TT-EEEEEEEEECCCC
T ss_pred             EECCEECCCCCcEEEE-ECCCEEEEEECCCChhhCEEEEEEe----CC-CCEEEEEEEeCCC
Confidence            5788888766554443 344   8999999999999999999    33 4557899998544

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.05  E-value=1.2e-10  Score=65.50  Aligned_cols=53  Identities=13%  Similarity=0.186  Sum_probs=39.0

Q ss_pred             cccCeEcCcCc----cceEEecCC--EEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeC
Q psy7035           2 SFSNVQLYNNI----SAGVIVSNQ--SLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIG   59 (70)
Q Consensus         2 ~~ng~~l~~~~----~~~~~~~~~--tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~   59 (70)
                      +|||+++..+.    +..+..+++  +|+|.+++.+|+|.|+|.|.|.     +..+.|.|...
T Consensus        42 ~k~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~-----~~~~~l~V~~~  100 (101)
T 2edk_A           42 MKNGVELTREDSFKARYRFKKDGKRHILIFSDVVQEDRGRYQVITNGG-----QCEAELIVEEK  100 (101)
T ss_dssp             EESSCBCCCSCCSSCCCEEEECSSEEEEECSSCCGGGCSBEEEECSSC-----EECCBEEEECC
T ss_pred             EECCEECCCCCCcceeEEEEECCCEEEEEECCCChhhCEEEEEEEcCC-----cEEEEEEEeCC
Confidence            57888887654    324443333  6999999999999999999982     34567888743

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.05  E-value=2.1e-10  Score=78.70  Aligned_cols=50  Identities=22%  Similarity=0.255  Sum_probs=37.5

Q ss_pred             ceEEecCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeCCCCCC
Q psy7035          14 AGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGLGIPA   64 (70)
Q Consensus        14 ~~~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~p~~~~   64 (70)
                      +.....+++|+|.+|+++|+|.|+|.|+|..|.+. ..+.+.|.+.|..++
T Consensus       390 ~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~-~~~~~~v~~~~~~~~  439 (440)
T 3zyj_A          390 RIAVLSDGTLNFTNVTVQDTGMYTCMVSNSVGNTT-ASATLNVTGTHHHHH  439 (440)
T ss_dssp             SEEECTTCCEEESSCCSTTCEEEEEEEECSSCEEE-EEEEEEEC-------
T ss_pred             eEEEccCCeEEEccCChhhCEEEEEEEEcCCCcEE-EEEEEEEeccccccc
Confidence            34456789999999999999999999999999864 478999987766543

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*

Probab=99.05  E-value=3.2e-10  Score=74.93  Aligned_cols=62  Identities=16%  Similarity=0.082  Sum_probs=51.1

Q ss_pred             cc-cCeEcCcCccceEEecCCEEEEcccCCCC------CeeeEEEeEeCCCcccceeEEEEEEeCCCCC
Q psy7035           2 SF-SNVQLYNNISAGVIVSNQSLVLQNVSRAR------AGHYTCVGSNGEGDGQSNAQKTAYDIGLGIP   63 (70)
Q Consensus         2 ~~-ng~~l~~~~~~~~~~~~~tL~i~~v~~~D------~G~Y~C~a~N~~G~~~s~~~~L~V~~~p~~~   63 (70)
                      +| ||+++....+......+++|.|.+++.+|      +|.|+|.|.|..|...+..+.|.|.+.|...
T Consensus        39 ~k~~g~~~~~~~~~~~~~~~~~L~i~~~~~~d~~~~~d~G~Y~C~a~n~~g~~~s~~~~v~v~~~p~~~  107 (388)
T 2v5m_A           39 IRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYE  107 (388)
T ss_dssp             EETTSCBCCCBTTTBEECSTTEEEECCCCGGGCCHHHHEEEEEEEEEETTEEEECCCEEEEEECCCCCC
T ss_pred             EcCCCCccccCCCceEEcCCceEEecccChhhccccccCceEEEEEEccCCeEEecceEEEEccccccc
Confidence            35 78888655455556688999999999998      9999999999999877888999998877543

>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A

Probab=99.05  E-value=5.9e-10  Score=63.08  Aligned_cols=54  Identities=15%  Similarity=0.182  Sum_probs=40.3

Q ss_pred             cccCeEcCcCccceEEecCC--EEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeCC
Q psy7035           2 SFSNVQLYNNISAGVIVSNQ--SLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGL   60 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~~~~~--tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~p   60 (70)
                      +|||+++..+.+..+...+.  +|.|.+++.+|+|.|+|.|.|     .+..+.|.|...|
T Consensus        41 ~k~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n-----~~~~~~l~V~~~p   96 (108)
T 2dm7_A           41 KKGPETLRDGGRYSLKQDGTRCELQIHDLSVADAGEYSCMCGQ-----ERTSATLTVRALP   96 (108)
T ss_dssp             ESSSSBCCSSSSCEEEEETTEEEEEESSCCTTTCSEEEEEETT-----EEEEEECEEECCC
T ss_pred             EECCEECCCCCCEEEEecCCEEEEEECCCCcccCEEEEEEEcC-----CEEEEEEEEecCC
Confidence            57788877655544443333  599999999999999999966     3567889998654

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C

Probab=99.05  E-value=3e-10  Score=69.93  Aligned_cols=45  Identities=29%  Similarity=0.313  Sum_probs=36.3

Q ss_pred             CCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeCCCCCCC
Q psy7035          20 NQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGLGIPAE   65 (70)
Q Consensus        20 ~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~p~~~~~   65 (70)
                      +++|.|.+++.+|+|.|+|.|.|..|.. +..+.|.|...|..|..
T Consensus       184 ~~~L~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~V~~~p~~p~~  228 (231)
T 3ojm_B          184 AEVLALFNVTEADAGEYICKVSNYIGQA-NQSAWLTVLPKQQAPGR  228 (231)
T ss_dssp             TTEEEECSCCGGGCEEEEEEEEETTEEE-EEEEEEEEECCC-----
T ss_pred             ccEEEEecCCHHHCeEEEEEEEeccceE-eeEEEEEEecCCCCCcc
Confidence            4679999999999999999999999986 66899999977766554

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A

Probab=99.05  E-value=2.7e-10  Score=68.75  Aligned_cols=59  Identities=20%  Similarity=0.242  Sum_probs=45.5

Q ss_pred             cCeEcCcCccceEEe----cCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeCCCC
Q psy7035           4 SNVQLYNNISAGVIV----SNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGLGI   62 (70)
Q Consensus         4 ng~~l~~~~~~~~~~----~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~p~~   62 (70)
                      ||+.+.....+..+.    .+++|+|.+++.+|+|.|+|.|.|..|...+..+.|.|...|..
T Consensus        41 ~g~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~  103 (191)
T 1epf_A           41 NGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMF  103 (191)
T ss_dssp             TSCEECCBSSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTTEEEEEEEEEEEECCSEE
T ss_pred             CCccccCCCCeEEEEECCCCceEEEEccCCcccCEEEEEEEEcCCCcceEEEEEEEeecCceE
Confidence            788876443333222    34689999999999999999999998766777899999876643

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}

Probab=99.05  E-value=1.7e-10  Score=71.87  Aligned_cols=46  Identities=26%  Similarity=0.215  Sum_probs=32.8

Q ss_pred             CCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeCCCCCCCC
Q psy7035          20 NQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGLGIPAEP   66 (70)
Q Consensus        20 ~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~p~~~~~p   66 (70)
                      +++|.|.+++.+|+|.|+|.|+|..|.. +..+.|.|.+.|..+..+
T Consensus       181 ~~~L~i~~~~~~d~G~Y~C~a~N~~g~~-~~~~~l~V~~~p~~~~~~  226 (241)
T 3grw_A          181 DVRLRLANVSERDGGEYLCRATNFIGVA-EKAFWLSVHGPRAAEEEL  226 (241)
T ss_dssp             EEEEEECSCCGGGCEEEEEEEECSSCEE-EEEEEEEC----------
T ss_pred             ceEEEECcCCcccCcEEEEEEecCcceE-EEEEEEEecCCCCCCccc
Confidence            4579999999999999999999999987 557999999777654443

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.04  E-value=2.9e-10  Score=63.40  Aligned_cols=49  Identities=22%  Similarity=0.346  Sum_probs=37.6

Q ss_pred             cccCeEcCcCccceEEecCCEEEEcccCCCCCeeeEEEeEeCC-CcccceeEEEEEE
Q psy7035           2 SFSNVQLYNNISAGVIVSNQSLVLQNVSRARAGHYTCVGSNGE-GDGQSNAQKTAYD   57 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~-G~~~s~~~~L~V~   57 (70)
                      +|||+++...       .+++|.|.+++.+|+|.|+|.|.|.. +...+..+.|.|.
T Consensus        45 ~k~~~~~~~~-------~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~~s~~~~v~V~   94 (96)
T 2ens_A           45 MKDGVPLPLP-------PSPVLILPEIGPQDQGTYSCVATHSSHGPQESRAVSISII   94 (96)
T ss_dssp             EESSSBCSSC-------CCSEEEEESCCTTTCEEEECEECCSSCCCEECCCEEEEEC
T ss_pred             EECCEECcCC-------CCCEEEECCCCcccCEEEEEEEEeCCCCcEEEEEEEEEEe
Confidence            4555555432       35799999999999999999999964 5556777888875

>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.04  E-value=1.2e-09  Score=61.34  Aligned_cols=55  Identities=13%  Similarity=0.100  Sum_probs=40.9

Q ss_pred             cccCeEcCcCccceEEecCC---EEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeCCCC
Q psy7035           2 SFSNVQLYNNISAGVIVSNQ---SLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGLGI   62 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~~~~~---tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~p~~   62 (70)
                      +|||+++..+.+..+. .++   +|+|.+++.+|+|.|+|.    .|.. +..+.|.|...|..
T Consensus        42 ~k~~~~l~~~~~~~~~-~~~~~~~L~I~~v~~~D~G~Y~C~----~g~~-~~~~~l~V~~~p~~   99 (103)
T 2dku_A           42 RKGLLELRASGKHQPS-QEGLTLRLTISALEKADSDTYTCD----IGQA-QSRAQLLVQGRRSG   99 (103)
T ss_dssp             EESSCBCCSSSSEEEE-EETTEEEEEEESCCTTTCSEEEEE----CSSC-BCCEEEEEECSCCC
T ss_pred             EeCCEECCCCCeEEEE-eCCCEEEEEECCCCcccCEEEEEE----eCCc-eEEEEEEEeCccCC
Confidence            5788888766554443 344   899999999999999998    5554 44689999955543

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X

Probab=99.04  E-value=6.5e-11  Score=72.01  Aligned_cols=39  Identities=18%  Similarity=0.330  Sum_probs=34.7

Q ss_pred             ecCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEE
Q psy7035          18 VSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYD   57 (70)
Q Consensus        18 ~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~   57 (70)
                      ..+++|.|.+++++|+|.|+|.|+|..|.. +..+.|.|.
T Consensus       173 ~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~-~~~~~l~V~  211 (214)
T 3jz7_A          173 MTSPVISVKNASSEYSGTYSCTVQNRVGSD-QCMLRLDVV  211 (214)
T ss_dssp             TTSSEEEECSCCGGGCEEEEEEEECSSCEE-EEEEEECCB
T ss_pred             cCCCEEEEecCCHHHCEEEEEEEEcCCCcE-EEEEEEEEe
Confidence            357799999999999999999999999987 557888887

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A

Probab=99.03  E-value=4.7e-10  Score=67.71  Aligned_cols=55  Identities=11%  Similarity=0.218  Sum_probs=42.6

Q ss_pred             cccCeEcCcCccceEEecCC--EEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEE
Q psy7035           2 SFSNVQLYNNISAGVIVSNQ--SLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYD   57 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~~~~~--tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~   57 (70)
                      ++||.++..+.+..+..+++  +|.|.+++.+|+|.|+|.|+|..|... ..+.|.|+
T Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~-~~~~l~V~  194 (194)
T 2a38_A          138 YRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGRAT-STAELLVQ  194 (194)
T ss_dssp             EETTEECCCSSSEEEEEETTEEEEEEEEECGGGCEEEEEEEEETTEEEE-EEEEEEEC
T ss_pred             EECCEECCCCCcEEEEEcCCEEEEEECCCChhcCeEEEEEEEeCCCceE-EEEEEEEC
Confidence            57888887665544443343  899999999999999999999999854 46777773

>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}

Probab=99.03  E-value=8.1e-11  Score=76.01  Aligned_cols=56  Identities=16%  Similarity=0.129  Sum_probs=41.1

Q ss_pred             cccCeEcCcCccceEEecCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeCCC
Q psy7035           2 SFSNVQLYNNISAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGLG   61 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~p~   61 (70)
                      +|||.++....   ...++..|.|.+++++|+|.|+|.|+|..|.. +..+.|.|.++|-
T Consensus       248 ~k~~~~~~~~~---~~~~~~~l~i~~v~~~d~G~Y~C~A~N~~G~~-~~~~~l~V~~~P~  303 (308)
T 4fom_A          248 SRLDGQWPDGL---LASDNTLHFVHPLTFNYSGVYICKVTNSLGQR-SDQKVIYISDPPH  303 (308)
T ss_dssp             CBSSSCCCSSC---BCSTTEEECCSCCCSCCCSEEEEEEEETTEEE-EEEEECCEECCC-
T ss_pred             EECCeECCCcE---EEcCCeEEEECCCChhhCEEEEEEEEeCCCcE-EEEEEEEEEcCCC
Confidence            45666654321   12234456789999999999999999999986 5578999997774

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A

Probab=99.02  E-value=5.5e-10  Score=67.69  Aligned_cols=61  Identities=13%  Similarity=0.125  Sum_probs=46.7

Q ss_pred             cccCeEcCcCccce-EE-ecCC--EEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeCCCCC
Q psy7035           2 SFSNVQLYNNISAG-VI-VSNQ--SLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGLGIP   63 (70)
Q Consensus         2 ~~ng~~l~~~~~~~-~~-~~~~--tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~p~~~   63 (70)
                      ++||.++..+..+. +. ..++  +|.|.+++.+|+|.|+|.|.|..|.. +..+.|.|.+.|...
T Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~-~~~~~l~V~~~p~~~  103 (197)
T 2j8h_A           39 YRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRATNQGGSV-SGTASLEVEVPAKIH  103 (197)
T ss_dssp             EETTEECCCCSSSEEEEEETTTEEEEEECSCCGGGCSEEEEEEEETTEEE-EEEEEEEEEEEEEEC
T ss_pred             EECCEECccCCCcEEEEEcCCCEEEEEECcCCHHhCEEEEEEEEECCCce-eEEEEEEEcCCCcCC
Confidence            57888886543333 22 2344  89999999999999999999998875 668899998876543

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A

Probab=99.02  E-value=8.4e-10  Score=61.92  Aligned_cols=54  Identities=11%  Similarity=0.064  Sum_probs=40.3

Q ss_pred             cccCeEcCcCccceEEecCC--EEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeCC
Q psy7035           2 SFSNVQLYNNISAGVIVSNQ--SLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGL   60 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~~~~~--tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~p   60 (70)
                      +|||+++..+.+..+...+.  +|+|.+++.+|+|.|+|.|    |. .+..+.|.|...|
T Consensus        42 ~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a----g~-~~~~~~l~V~~~P   97 (100)
T 2yuv_A           42 YKNGQEIRPSTKYIFEHKGCQRILFINNCQMTDDSEYYVTA----GD-EKCSTELFVRSGP   97 (100)
T ss_dssp             EESSCBCCCBTTEEEEEETTEEEEEEEEECTTTCCEEEEEE----TT-EEEEEEEEECCSC
T ss_pred             EECCEECCCCCCEEEEecCCEEEEEEcCCCcCcCEEEEEEE----CC-ceEEEEEEEecCC
Confidence            57888887665544443333  6999999999999999999    44 3456889998554

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A

Probab=99.02  E-value=1.5e-10  Score=71.37  Aligned_cols=47  Identities=13%  Similarity=0.156  Sum_probs=38.1

Q ss_pred             cccCeEcCcCccceEEecCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeC
Q psy7035           2 SFSNVQLYNNISAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIG   59 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~   59 (70)
                      +|||+++.....     .+++|.|.+++.+|+|.|+|.|+|..|..      |.|+|.
T Consensus       139 ~k~g~~i~~~~~-----~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~------l~V~yr  185 (186)
T 1jbj_A          139 LKDGSIISPLNA-----TKNTWNLGNNAKDPRGTYQCQGAKETSNP------LQVYYR  185 (186)
T ss_dssp             EETTEECCCSSC-----CSSCCEEEETTSCCEEEEEEEESSCEEEE------EEEECC
T ss_pred             EECCEECcccCC-----CcceEEECCCCcCcCEEEEEEEEcCcCCc------EEEEEe
Confidence            578888764332     56899999999999999999999998864      777763

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*

Probab=99.02  E-value=4.9e-10  Score=73.43  Aligned_cols=65  Identities=18%  Similarity=0.186  Sum_probs=46.7

Q ss_pred             cccCeEcCcCccceEEecCCEEEEcccCCCCCeeeEEEeEeCC-Ccc--cceeEEEEEEeCCCCCCCCcc
Q psy7035           2 SFSNVQLYNNISAGVIVSNQSLVLQNVSRARAGHYTCVGSNGE-GDG--QSNAQKTAYDIGLGIPAEPLF   68 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~-G~~--~s~~~~L~V~~~p~~~~~p~~   68 (70)
                      +|||+++...  ..+...+.+|.|.+++++|+|.|+|.|.|.. |..  .+..+.|.|...+....+|.+
T Consensus       160 ~k~~~~l~~~--~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~g~~~~~~~~~~l~v~~~~~~~~~p~i  227 (349)
T 4dep_C          160 YMGCYKIQNF--NNVIPEGMNLSFLIALISNNGNYTCVVTYPENGRTFHLTRTLTVKVVGSPKNAVPPVI  227 (349)
T ss_dssp             EETTEECCSC--SSEEEETTEEEEESCCGGGCEEEEEEEEEEETTEEEEEEEEEEEEEECCGGGCCSCEE
T ss_pred             eeCCEECCCc--cceeecCCEEEEeeeeecCCcEEEEEEEEeeCCEEEEEEEEEEEEEEccCCCCCCCeE
Confidence            5778877543  3344566789999999999999999999987 544  367788888764332334433

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A

Probab=99.01  E-value=4.2e-10  Score=67.93  Aligned_cols=54  Identities=15%  Similarity=0.240  Sum_probs=40.7

Q ss_pred             cccCeEcCc-CccceEEecCCEEEEcccCCCCCeeeEEEeEeCC-CcccceeEEEE
Q psy7035           2 SFSNVQLYN-NISAGVIVSNQSLVLQNVSRARAGHYTCVGSNGE-GDGQSNAQKTA   55 (70)
Q Consensus         2 ~~ng~~l~~-~~~~~~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~-G~~~s~~~~L~   55 (70)
                      ++||.++.. ...+.....+++|.|.+++.+|+|.|+|.|.|.. +...+..+.+.
T Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~i~v~  190 (191)
T 1epf_A          135 KHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVI  190 (191)
T ss_dssp             EETTEEGGGGCCTTEEECTTSCEEETTCCGGGCEEEEEEEEEGGGTEEEEEEEEEE
T ss_pred             EECCEEeeccCCceEEEecCCeEEECCCChhhCEEEEEEEEEecceeEEEEEEEEe
Confidence            478888854 3334555678899999999999999999999987 45445555554

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}

Probab=99.01  E-value=1.1e-09  Score=69.76  Aligned_cols=60  Identities=17%  Similarity=0.212  Sum_probs=46.3

Q ss_pred             cCeEcCcCccceEEecC--CEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeCCCCC
Q psy7035           4 SNVQLYNNISAGVIVSN--QSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGLGIP   63 (70)
Q Consensus         4 ng~~l~~~~~~~~~~~~--~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~p~~~   63 (70)
                      ||..+..+.+..+..++  .+|.|.+++.+|+|.|+|.|.|..|...+..+.|.|...|...
T Consensus        41 ~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~n~~g~~~~~~~~l~v~~~~~~~  102 (291)
T 2wim_A           41 QGEKIISTQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFR  102 (291)
T ss_dssp             TCCBCCCBTTEEEEEETTEEEEEECSCCGGGCEEEEEEEECSSSCEEEEEEEEEEECCCBCC
T ss_pred             CCcCccCCCcEEEecCCCEEEEEEccCCcccCEEEEEEEecccCceEEEEEEEEecCCcceE
Confidence            67776655443333222  3899999999999999999999999887888999998776543

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C*

Probab=99.01  E-value=5.3e-10  Score=67.64  Aligned_cols=39  Identities=18%  Similarity=0.330  Sum_probs=36.2

Q ss_pred             cCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEE
Q psy7035          19 SNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYD   57 (70)
Q Consensus        19 ~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~   57 (70)
                      .+++|.|.+++.+|+|.|+|.|.|..|...|.++.|.|.
T Consensus       135 ~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~  173 (175)
T 1fnl_A          135 HNSDFHIPKATLKDSGSYFCRGLVGSKNVSSETVNITIT  173 (175)
T ss_dssp             ECCCEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEE
T ss_pred             CCCEEEEcccChhhCeEEEEEEEcCCCCccCccEEEEEe
Confidence            568999999999999999999999988888889999997

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A

Probab=99.00  E-value=4.2e-10  Score=67.13  Aligned_cols=39  Identities=15%  Similarity=0.312  Sum_probs=35.6

Q ss_pred             cCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEE
Q psy7035          19 SNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYD   57 (70)
Q Consensus        19 ~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~   57 (70)
                      .+++|.|.+++.+|+|.|+|.|.|..|...|.++.|.|+
T Consensus       132 ~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~  170 (170)
T 3ry4_A          132 LDPTFSIPQANHSHSGDYHCTGNIGYTLFSSKPVTITVQ  170 (170)
T ss_dssp             SCCEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEC
T ss_pred             CCCeEEEEeccccCCEEEEEEEEeCcCccccccEEEEEC
Confidence            467899999999999999999999999888888998874

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A

Probab=99.00  E-value=1.7e-09  Score=66.78  Aligned_cols=61  Identities=20%  Similarity=0.220  Sum_probs=47.1

Q ss_pred             cccCeEcCc-CccceEE-ecCC--EEEEcccCC-CCCeeeEEEeEeCCCcccceeEEEEEEeCCCC
Q psy7035           2 SFSNVQLYN-NISAGVI-VSNQ--SLVLQNVSR-ARAGHYTCVGSNGEGDGQSNAQKTAYDIGLGI   62 (70)
Q Consensus         2 ~~ng~~l~~-~~~~~~~-~~~~--tL~i~~v~~-~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~p~~   62 (70)
                      ++||.++.. +.+..+. ..++  +|.|.+++. +|+|.|+|.|.|..|...+..+.|.|.+.+..
T Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C~~~n~~g~~~~~~~~l~V~~~~~~  106 (212)
T 2yd1_A           41 RKNGKKVSGTQSRYTVLEQPGGISILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKT  106 (212)
T ss_dssp             EETTEECCTTSTTEEEEEETTTEEEEEESSCCTTTTCSEEEEEEECSSSCEEEEEEEEEEECTTCS
T ss_pred             EECCEECCCCcceeEEEEcCCCeEEEEEEecCCCCcCceEEEEEEeCCCCeEEeeEEEEEecccCC
Confidence            578888863 3333332 2343  899999999 99999999999999986778899999977543

>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A

Probab=99.00  E-value=5e-10  Score=68.78  Aligned_cols=56  Identities=11%  Similarity=-0.003  Sum_probs=36.0

Q ss_pred             cccCeEcCcCccceE-Eec---CCEEEEcccCCCCCeeeEEEeEeCCCc----ccceeEEEEEE
Q psy7035           2 SFSNVQLYNNISAGV-IVS---NQSLVLQNVSRARAGHYTCVGSNGEGD----GQSNAQKTAYD   57 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~-~~~---~~tL~i~~v~~~D~G~Y~C~a~N~~G~----~~s~~~~L~V~   57 (70)
                      +|||..+........ ...   +++|+|.+++.+|+|.|+|.|.|..+.    ..|.++.|.|.
T Consensus       134 ~k~g~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~~~~~~s~~S~~~~l~V~  197 (198)
T 1ugn_A          134 CKEGEDEHPQCLNSQPHARGSSRAIFSVGPVSPSRRWWYRCYAYDSNSPYEWSLPSDLLELLVL  197 (198)
T ss_dssp             EEC------CEEEC------CCEEEEEECCCCTTSCEEEEEEEECTTSTTEECCCCCCEEEEEE
T ss_pred             EECCCccCCccccccccCCCcceeEEEecccCcccCeEEEEEEEeCCCCccccCcCceEEEEec
Confidence            467776643322111 111   379999999999999999999998763    34888999885

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4

Probab=99.00  E-value=3.6e-10  Score=74.67  Aligned_cols=61  Identities=20%  Similarity=0.212  Sum_probs=47.6

Q ss_pred             cccCeEcCcCccceEEe----cCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeCCCC
Q psy7035           2 SFSNVQLYNNISAGVIV----SNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGLGI   62 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~~----~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~p~~   62 (70)
                      ++||+++.......+..    .+.+|.|.+++.+|+|.|+|.|.|..|...+..+.|.|.+.|..
T Consensus       247 ~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V~~~P~~  311 (395)
T 1bih_A          247 FKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVVSAPKY  311 (395)
T ss_dssp             EETTEECCCCTTSSEESCSSSTTSEEEESSCCGGGCEEEEEEECCSSSSCEEEEEEEEEEEEEEE
T ss_pred             EECCEEcCCCCceeEEEEecCCCceEEEccCChhhCEEEEEEEEeCCCCceEEEEEEEEEcCCcc
Confidence            57888876543333332    22389999999999999999999999998777899999987754

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}

Probab=99.00  E-value=6.3e-10  Score=73.69  Aligned_cols=65  Identities=15%  Similarity=0.207  Sum_probs=51.2

Q ss_pred             cccCeEcCc--CccceEEecCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeCCCCCCCC
Q psy7035           2 SFSNVQLYN--NISAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGLGIPAEP   66 (70)
Q Consensus         2 ~~ng~~l~~--~~~~~~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~p~~~~~p   66 (70)
                      ++||..+..  ...+.....+++|.|.+++.+|+|.|+|.|.|..|...+..+.|.|.+.|..+..|
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~~l~v~~~p~~~~~~  222 (403)
T 3laf_A          156 QKNQQDLNPIPGDSRVVVLPSGALQISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQL  222 (403)
T ss_dssp             EESSSBCCCCTTCCSEEECTTSCEEECSCCGGGCEEEEEEEECSSCCCBCCCEEEEEECCCCCCEEE
T ss_pred             EECCEeccccCCceEEEEcCCceEEEcccccccCEEEEEEEEcCCCceeccceeEEEecCCCcccCc
Confidence            467777642  23344555788999999999999999999999999888888999999888765443

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A

Probab=99.00  E-value=4.9e-10  Score=71.34  Aligned_cols=58  Identities=21%  Similarity=0.240  Sum_probs=45.1

Q ss_pred             cCeEcCcCccceEEe----cCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeCCC
Q psy7035           4 SNVQLYNNISAGVIV----SNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGLG   61 (70)
Q Consensus         4 ng~~l~~~~~~~~~~----~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~p~   61 (70)
                      ||+.+..+..+..+.    .+++|.|.+++.+|+|.|+|.|.|..|...+..+.|.|...|.
T Consensus        41 ~g~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~n~~g~~~~~~~~l~v~~~~~  102 (291)
T 1qz1_A           41 NGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLM  102 (291)
T ss_dssp             TSCBCCSSCSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEECTTSCEEEEEEEEEEECCSE
T ss_pred             CCeECccCCceEEEEEcCCCeEEEEEecCCCCCCEEEEEEEEcCCCCeeEEEEEEEeecccc
Confidence            777776543333222    3458999999999999999999999987777788999986654

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A

Probab=98.99  E-value=5.9e-10  Score=73.67  Aligned_cols=46  Identities=15%  Similarity=0.289  Sum_probs=39.3

Q ss_pred             CCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeCCCCCCCC
Q psy7035          20 NQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGLGIPAEP   66 (70)
Q Consensus        20 ~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~p~~~~~p   66 (70)
                      +++|.|.+++++|+|.|+|.|.|..|.. +..+.|.|.+.|.....|
T Consensus        62 ~~~L~i~~v~~~D~G~Y~C~a~n~~g~~-~~~~~l~V~~~P~~~~~~  107 (389)
T 2jll_A           62 SSSLHIKDVKLSDSGRYDCEAASRIGGH-QKSMYLDIEYAPKFISNQ  107 (389)
T ss_dssp             EEEEEEESCCGGGCEEEEEEEECSSCEE-EEEEEEEEEEEEEECCSC
T ss_pred             cceEEEcccChhhCEEEEEEEEeCCCCc-ceEEEEEEEeCCEEecCc
Confidence            4689999999999999999999999985 668999999888654333

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4

Probab=98.99  E-value=4.9e-10  Score=68.15  Aligned_cols=40  Identities=25%  Similarity=0.421  Sum_probs=36.2

Q ss_pred             ecCCEEEEcccCCCCCeeeEEEeEeCCCcc-cceeEEEEEE
Q psy7035          18 VSNQSLVLQNVSRARAGHYTCVGSNGEGDG-QSNAQKTAYD   57 (70)
Q Consensus        18 ~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~-~s~~~~L~V~   57 (70)
                      ..+++|.|.+++.+|+|.|+|.|+|..|.. .+..+.|.|.
T Consensus       166 ~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~~~l~V~  206 (212)
T 1f97_A          166 PKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMDAV  206 (212)
T ss_dssp             TTTCCEEESSCCGGGCEEEEEEEECSSSCCEECCCEEEEEE
T ss_pred             CCCceEEEEecChhhCcEEEEEEccccCCccccceEEEEEE
Confidence            357799999999999999999999999988 6778999987

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}

Probab=98.98  E-value=3.6e-10  Score=69.35  Aligned_cols=56  Identities=13%  Similarity=0.128  Sum_probs=42.1

Q ss_pred             cccCeEcCcCccce---EEecCCEEEEcccCCCCCeeeEEEeEeCCC----cccceeEEEEEE
Q psy7035           2 SFSNVQLYNNISAG---VIVSNQSLVLQNVSRARAGHYTCVGSNGEG----DGQSNAQKTAYD   57 (70)
Q Consensus         2 ~~ng~~l~~~~~~~---~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G----~~~s~~~~L~V~   57 (70)
                      +|||..+.......   ....+++|.|.+|+.+|+|.|+|.|+|..+    ...|.++.|.|.
T Consensus       133 ~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~~s~~S~~~~l~V~  195 (196)
T 3p2t_A          133 CKERAAHPLLCLRSEHGAQQHQAEFPMSPVTSVHGGTYRCFSSHGFSHYLLSHPSDPLELIVS  195 (196)
T ss_dssp             EETTCCCGGGSEEEEEEEEEEEEEEEECSCCGGGCEEEEEEEECGGGTTEECCCCCCEEEEEC
T ss_pred             EeCCCcccceeecccccccCcceEEEeCCCcccCCCeEEEEEEcCCCCcccCCCCCCEEEEeC
Confidence            56776664322111   223567899999999999999999999987    667888988884

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R

Probab=98.98  E-value=4.9e-11  Score=84.86  Aligned_cols=60  Identities=17%  Similarity=0.148  Sum_probs=0.0

Q ss_pred             cccCeEcCcCccceEEecCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeCCCC
Q psy7035           2 SFSNVQLYNNISAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGLGI   62 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~p~~   62 (70)
                      +|||+++..+.+..+.-.+++|+|.+++++|+|.|+|.|+|..|...+ ++.|.|...|+.
T Consensus       701 ~k~g~~l~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~-~~~l~V~~~p~~  760 (772)
T 3v2a_R          701 FKDNETLVEDSGIVLKDGNRNLTIRRVRKEDEGLYTCQACSVLGCAKV-EAFFIIEGAQEK  760 (772)
T ss_dssp             -------------------------------------------------------------
T ss_pred             EECCeECcCCCCeEEcCCCcEEEECcCCHHHCEEEEEEEEeCCcceeE-EEEEEEECCCCc
Confidence            578888876654444445789999999999999999999999999766 799999987774

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}

Probab=98.97  E-value=9.9e-10  Score=66.63  Aligned_cols=56  Identities=16%  Similarity=0.172  Sum_probs=43.5

Q ss_pred             cccCeEcCcCccceEEecCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeCCCC
Q psy7035           2 SFSNVQLYNNISAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGLGI   62 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~p~~   62 (70)
                      ++||.++..+...   ..+++|.|.+++++|+|.|+|.|.|. |. .+..+.|.|.+.|..
T Consensus        40 ~~~~~~~~~~~~~---~~~~~L~i~~~~~~d~G~Y~C~~~n~-~~-~~~~~~l~V~~~p~~   95 (190)
T 2wv3_A           40 TKNGVELTATRKN---ASNMEYRINKPRAEDSGEYHCVYHFV-SA-PKANATIEVKAAPDI   95 (190)
T ss_dssp             EETTEECTTCCBC---CSEEEEEESSCCGGGCEEEEEEEEET-TE-EEEEEEEEEECCCEE
T ss_pred             EECCEECcccceE---eccEEEEEecCCcccCEEEEEEEEeC-Cc-ccccEEEEEecCCcc
Confidence            4677777644322   15679999999999999999999999 54 466899999987643

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4

Probab=98.97  E-value=1.1e-09  Score=61.03  Aligned_cols=40  Identities=28%  Similarity=0.360  Sum_probs=34.2

Q ss_pred             EecCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEE
Q psy7035          17 IVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYD   57 (70)
Q Consensus        17 ~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~   57 (70)
                      ...+++|.|.+++.+|+|.|+|.|.|..|.. +..+.|.|.
T Consensus        58 ~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~-~~~~~l~V~   97 (98)
T 1gl4_B           58 MDFNGILTIRNVQPSDAGTYVCTGSNMFAMD-QGTATLHVQ   97 (98)
T ss_dssp             EEETTEEEECSCCGGGCEEEEEEEECSSCEE-EEEEEEEEC
T ss_pred             ecCCCEEEEeCCChhhCEEEEEEecCCCCcc-ccEEEEEEe
Confidence            3457899999999999999999999999975 446778774

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}

Probab=98.97  E-value=1.6e-09  Score=65.15  Aligned_cols=60  Identities=15%  Similarity=0.209  Sum_probs=45.9

Q ss_pred             cccCeEcCcCccceEEecCC--EEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeCCCC
Q psy7035           2 SFSNVQLYNNISAGVIVSNQ--SLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGLGI   62 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~~~~~--tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~p~~   62 (70)
                      ++||.++....+..+..+++  +|.|.+++.+|+|.|+|.|.|..|.. +..+.|.|.+.|..
T Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~-~~~~~l~v~~~p~~  103 (197)
T 3lcy_A           42 YRFGKELIQSRKYKMSSDGRTHTLTVMTEEQEDEGVYTCIATNEVGEV-ETSSKLLLQATPQF  103 (197)
T ss_dssp             EETTEEECCCSSEEEEESSSEEEEEEECCSGGGCEEEEEEEECSSCEE-EEEEEEEEEEEEEE
T ss_pred             EECCEECCCCccEEEEeCCCEEEEEEecCCccCCEEEEEEEECCCCce-eEEEEEEEEcCCCC
Confidence            57788887655444443333  89999999999999999999999875 44678888877653

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G

Probab=98.97  E-value=1.9e-10  Score=69.89  Aligned_cols=39  Identities=31%  Similarity=0.498  Sum_probs=35.3

Q ss_pred             cCCEEEEcccCCCCCeeeEEEeEeCCCcc-cceeEEEEEE
Q psy7035          19 SNQSLVLQNVSRARAGHYTCVGSNGEGDG-QSNAQKTAYD   57 (70)
Q Consensus        19 ~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~-~s~~~~L~V~   57 (70)
                      .+++|.|.+++.+|+|.|+|.|+|..|.. .+..+.|.|.
T Consensus       169 ~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~v~l~V~  208 (209)
T 1nbq_A          169 TTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRMEAV  208 (209)
T ss_dssp             TTCCEEESSCCGGGCCCEEEEEECSSSCCEECCCBCCEEE
T ss_pred             CcceEEEEeccccCCeEEEEEEeCCcCcccccccEEEEEe
Confidence            56799999999999999999999999988 6778888886

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A

Probab=98.97  E-value=9.5e-10  Score=69.99  Aligned_cols=55  Identities=15%  Similarity=0.225  Sum_probs=42.3

Q ss_pred             cccCeEcCcCc----cceEEecCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEE
Q psy7035           2 SFSNVQLYNNI----SAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYD   57 (70)
Q Consensus         2 ~~ng~~l~~~~----~~~~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~   57 (70)
                      ++||+++....    +..+...+.+|+|.+++.+|+|.|+|.|.|..|.. +..+.|.|.
T Consensus       231 ~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~-~~~~~l~V~  289 (291)
T 1qz1_A          231 TKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQ-DASIHLKVF  289 (291)
T ss_dssp             EETTEECCCC--CCSSEEECTTSCEEEECSCCGGGCEEEEEEEEETTEEE-EEEEEEEEE
T ss_pred             EECCEECcCCCCCCcceEEcCCCcEEEEEecChhcCEEEEEEEEeCCCce-EEEEEEEEE
Confidence            57888886543    22222245689999999999999999999999985 567889886

>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens}

Probab=98.97  E-value=8.7e-10  Score=67.39  Aligned_cols=41  Identities=22%  Similarity=0.217  Sum_probs=35.2

Q ss_pred             ecCCEEEEcccCCCCCeeeEEEeEeCCCc-ccceeEEEEEEe
Q psy7035          18 VSNQSLVLQNVSRARAGHYTCVGSNGEGD-GQSNAQKTAYDI   58 (70)
Q Consensus        18 ~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~-~~s~~~~L~V~~   58 (70)
                      ..+++|.|.+++++|+|.|+|.|.|..|. ..+..+.|.|..
T Consensus        49 ~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~~~l~V~~   90 (184)
T 2gi7_A           49 QDQAVLFIPAMKRSLAGRYRCSYQNGSLWSLPSDQLELVATG   90 (184)
T ss_dssp             ESSSEEEESSCCGGGCEEEEEEEEETTEEBCCCCCEEEEEES
T ss_pred             CcccEEEECcCChhhCceEEEEEEcCCCccCCCCCEEEEecC
Confidence            46789999999999999999999998874 456778899864

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}

Probab=98.96  E-value=7.4e-10  Score=73.36  Aligned_cols=60  Identities=15%  Similarity=0.155  Sum_probs=49.6

Q ss_pred             cccCeEcCcCccceEEecCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeCCCC
Q psy7035           2 SFSNVQLYNNISAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGLGI   62 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~p~~   62 (70)
                      ++||..+...........+++|.|.+++.+|+|.|+|.|.|..|.. +..+.|.|.++|..
T Consensus       256 ~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~V~~~p~~  315 (403)
T 3laf_A          256 LRGEEVIQLRSKKYSLLGGSNLLISNVTDDDSGTYTCVVTYKNENI-SASAELTVLVPPWF  315 (403)
T ss_dssp             EETTEECCCSSSSEEEETTTEEEECSCCGGGCEEEEEEEEETTEEE-EEEEEEEEEEEEEE
T ss_pred             EECCeeccCCCceEEECCccEEEEeCCCHHHCEEEEEEEEcCCCce-EEEEEEEEECCCcE
Confidence            4678888765555666678899999999999999999999998864 66789999987743

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X

Probab=98.96  E-value=7e-10  Score=67.38  Aligned_cols=44  Identities=14%  Similarity=0.167  Sum_probs=37.7

Q ss_pred             CCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeCCCCCC
Q psy7035          20 NQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGLGIPA   64 (70)
Q Consensus        20 ~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~p~~~~   64 (70)
                      +.+|.|.+++.+|+|.|+|.|.|..|.. +..+.|.|...|..+.
T Consensus        83 ~~~L~i~~v~~~D~G~Y~C~~~~~~~~~-~~~~~l~V~~~p~~~~  126 (214)
T 3jz7_A           83 DASINVTNLQLSDIGTYQCKVKKAPGVA-NKKFLLTVLVKPSGTR  126 (214)
T ss_dssp             BCCEEECSCCGGGCEEEEEEEEETTEEE-EEEEEEEEECCCBSCE
T ss_pred             cccEEEccCChhhCeEEEEEEEeCCCcc-ccEEEEEEEcCCCCce
Confidence            5789999999999999999999998865 6689999997776543

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=98.96  E-value=9.6e-10  Score=66.43  Aligned_cols=38  Identities=13%  Similarity=0.119  Sum_probs=34.2

Q ss_pred             CCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEe
Q psy7035          20 NQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDI   58 (70)
Q Consensus        20 ~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~   58 (70)
                      +.+|.|.+++++|+|.|+|+|+|..|. .+..+.|+|..
T Consensus        74 ~~~L~I~~v~~~DaG~Y~Cevsn~~g~-~~~~~~L~V~~  111 (126)
T 2dav_A           74 TFEMQIIKAKDNFAGNYRCEVTYKDKF-DSCSFDLEVHE  111 (126)
T ss_dssp             EEEEEECSCCTTSCEEEEEEEECSSCE-EEECCEEEEEC
T ss_pred             eEEEEEccCCcccCEEEEEEEEeCCCc-EEEEEEEEEEe
Confidence            468999999999999999999999877 46689999997

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4

Probab=98.96  E-value=4.7e-10  Score=74.12  Aligned_cols=59  Identities=17%  Similarity=0.163  Sum_probs=47.0

Q ss_pred             cccCeEcCcCcc-ceEEecCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeCC
Q psy7035           2 SFSNVQLYNNIS-AGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGL   60 (70)
Q Consensus         2 ~~ng~~l~~~~~-~~~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~p   60 (70)
                      +|||+++..... ......+++|.|.+++.+|+|.|+|.|.|..|...+..+.|.|.+.+
T Consensus        42 ~k~g~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~s~~~~l~v~~~~  101 (395)
T 1bih_A           42 KKDGKSYNWQEHNAALRKDEGSLVFLRPQASDEGHYQCFAETPAGVASSRVISFRKTYLI  101 (395)
T ss_dssp             EESSSBCCTTTTTEEECTTSCCEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEEEE
T ss_pred             EECCcCcccccceEEEecCCceEEEecCCCCCCcEEEEEEEeCCCeEEeEEEEEEEEEee
Confidence            578888865442 23344678999999999999999999999999887777888887644

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}

Probab=98.95  E-value=7.4e-10  Score=77.89  Aligned_cols=59  Identities=20%  Similarity=0.272  Sum_probs=46.8

Q ss_pred             cccCeEcCcCccceEEecC--CEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeCCC
Q psy7035           2 SFSNVQLYNNISAGVIVSN--QSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGLG   61 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~~~~--~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~p~   61 (70)
                      +|||.++..+.+..+..++  ++|.|.+++++|+|.|+|.|+|..|.... .+.|.|..+|.
T Consensus       419 ~k~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~-~~~l~v~~~P~  479 (570)
T 3b43_A          419 HKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSDTC-VGSITLKAPPR  479 (570)
T ss_dssp             EETTEECCSSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEECSSCEEEE-EEEEEECCCCE
T ss_pred             EECCEECcCCCCEEEEEcCCEEEEEECCCChhhCEEEEEEEEECCCeEEE-EEEEEeccCCc
Confidence            5788888766555444444  48999999999999999999999998654 67889887664

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens}

Probab=98.95  E-value=1.4e-09  Score=65.68  Aligned_cols=53  Identities=17%  Similarity=0.208  Sum_probs=42.0

Q ss_pred             cccCeEcCcCccceEEecCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEE
Q psy7035           2 SFSNVQLYNNISAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYD   57 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~   57 (70)
                      ++||.++..+  ..+...+++|.|.+++.+|+|.|+|.|.|..|.. +..+.|.|+
T Consensus       148 ~~~~~~~~~~--~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~-~~~~~l~V~  200 (201)
T 3s97_C          148 RKVLEPMPST--AEISTSGAVLKIFNIQLEDEGIYECEAENIRGKD-KHQARIYVQ  200 (201)
T ss_dssp             EETTBCCCTT--CEEETTTTEEEECSCCGGGCEEEEEEEEETTEEE-EEEEEEEEE
T ss_pred             EeCCCcCCCc--eeecCCCCEEEEccCChhhCEEEEEEEEecCCce-eeeEEEEEe
Confidence            4566666533  3445578899999999999999999999999986 457888885

>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion; 2.40A {Homo sapiens}

Probab=98.95  E-value=2e-09  Score=64.18  Aligned_cols=41  Identities=20%  Similarity=0.075  Sum_probs=34.6

Q ss_pred             CCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeCCCC
Q psy7035          20 NQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGLGI   62 (70)
Q Consensus        20 ~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~p~~   62 (70)
                      +.+|+|.+++.+|+|.|+|.|.|. |. .+..+.|.|...|..
T Consensus       102 ~~~L~I~~v~~~DsG~Y~C~~~n~-~~-~~~~~~L~V~~~P~~  142 (145)
T 1z9m_A          102 ELSISISNVALADEGEYTCSIFTM-PV-RTAKSLVTVLGIPQK  142 (145)
T ss_dssp             EEEEEECSCCGGGCEEEEEEECSS-SC-EEEEEEEEEECCCC-
T ss_pred             eEEEEECCCChhhCEEEEEEEEcC-CC-ceEEEEEEEEeCCCC
Confidence            468999999999999999999999 65 466899999965543

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens}

Probab=98.95  E-value=3.7e-09  Score=58.84  Aligned_cols=51  Identities=14%  Similarity=0.216  Sum_probs=38.1

Q ss_pred             cccCeEcCcCccceEEecC--CEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEE
Q psy7035           2 SFSNVQLYNNISAGVIVSN--QSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYD   57 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~~~~--~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~   57 (70)
                      +|||.++..+.+..+...+  .+|+|.+++.+|+|.|+|.|    |. .+..+.|.|.
T Consensus        42 ~k~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a----g~-~~~~~~l~V~   94 (95)
T 2k1m_A           42 QRGGSDISASNKYGLATEGTRHTLTVREVGPADQGSYAVIA----GS-SKVKFDLKVI   94 (95)
T ss_dssp             ECSSSEECSSTTCEEEEETTEEEEEESSCCTTCCSEEEEEE----TT-EEEEEEEEEE
T ss_pred             EECCEECCCCCcEEEEEcCCEEEEEEcCCCcccCEEEEEEE----CC-ceEEEEEEEe
Confidence            5788888766554444333  37999999999999999999    33 3446888875

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}

Probab=98.95  E-value=2.8e-10  Score=72.94  Aligned_cols=55  Identities=15%  Similarity=0.158  Sum_probs=40.1

Q ss_pred             cccCeEcCcCccceEEecCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEE
Q psy7035           2 SFSNVQLYNNISAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYD   57 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~   57 (70)
                      +|||+++..+.+..+.-...+|.|.+++.+|+|.|+|.|+|..|...+ .+.|.|+
T Consensus       257 ~~~g~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~G~~~~-~~~l~i~  311 (312)
T 2y23_A          257 YKDEREISVDEKHDFKDGICTLLITEFSKKDAGIYEVILKDDRGKDKS-RLKLVDE  311 (312)
T ss_dssp             EETTEEEEEECCC----CEEEEEECSCSGGGCEEEEEEEESTTCCEEE-EEEECSC
T ss_pred             eeCCEECCCCCcEEEECCEEEEEECcCCHHHCEEEEEEEEcCCCceee-eeEEEec
Confidence            478888875444443322369999999999999999999999998654 5667653

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}

Probab=98.95  E-value=3e-09  Score=69.40  Aligned_cols=58  Identities=16%  Similarity=0.161  Sum_probs=44.6

Q ss_pred             cccCeEcCcCccceEEecC-CEEEEcccCCCCCeeeEEEeEeCCCc---ccceeEEEEEEeC
Q psy7035           2 SFSNVQLYNNISAGVIVSN-QSLVLQNVSRARAGHYTCVGSNGEGD---GQSNAQKTAYDIG   59 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~~~~-~tL~i~~v~~~D~G~Y~C~a~N~~G~---~~s~~~~L~V~~~   59 (70)
                      ++||.++..+..+.....+ ++|.|.+++.+|+|.|+|.|.|..|.   ..+..+.|.|...
T Consensus       160 ~k~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~~~~~l~V~~~  221 (339)
T 3o4o_C          160 YKDSLLLDKDNEKFLSVRGTTHLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKK  221 (339)
T ss_dssp             EESSCBCCTTCSSEEECTTSSEEEESSCCGGGCEEEEEEEECCBTTBCCEEEEEEEEEEECC
T ss_pred             ecCCeeCCCCCceeEEcCCcceEEEcccCHhhCeEEEEEEEECCCCeEEEEEEEEEEEEEcC
Confidence            5788888765444444433 58999999999999999999999875   3466788888854

>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens}

Probab=98.94  E-value=3.4e-10  Score=69.57  Aligned_cols=58  Identities=10%  Similarity=0.005  Sum_probs=42.1

Q ss_pred             cccCeEcCcCccc-eEEecCCEEEEcccCCCCCeeeEEEeEeCCCcc-cceeEEEEEEeC
Q psy7035           2 SFSNVQLYNNISA-GVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDG-QSNAQKTAYDIG   59 (70)
Q Consensus         2 ~~ng~~l~~~~~~-~~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~-~s~~~~L~V~~~   59 (70)
                      +|||.++...... .....+++|.|.+++++|+|.|+|.|.|..|.. .+..+.|.|.+.
T Consensus        38 ~k~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~~~l~V~~~   97 (196)
T 2d3v_A           38 VKEGSPEPWDTQNPLEPKNKARFSIPSMTEHHAGRYRCYYYSPAGWSEPSDPLELVVTGF   97 (196)
T ss_dssp             EETTCSSCSEEECCCSSTTEEEEEESSCCGGGCEEEEEEEEETTEECBCCCCEEEEEECS
T ss_pred             EECCCCCCcccccccCCccccEEEeccCChhHCeEEEEEEeCCCCcCCcCccEEEEecCC
Confidence            5677766432111 112245789999999999999999999998743 467899999864

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A

Probab=98.94  E-value=1.5e-09  Score=65.45  Aligned_cols=55  Identities=16%  Similarity=0.299  Sum_probs=41.7

Q ss_pred             cccCeEcCcCc--cceEEecCC--EEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEE
Q psy7035           2 SFSNVQLYNNI--SAGVIVSNQ--SLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYD   57 (70)
Q Consensus         2 ~~ng~~l~~~~--~~~~~~~~~--tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~   57 (70)
                      ++||.++....  +..+...++  +|.|.+++++|+|.|+|.|.|..|... ..+.|.|.
T Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~-~~~~l~v~   98 (194)
T 2a38_A           40 FRDGQVISTSTLPGVQISFSDGRAKLTIPAVTKANSGRYSLKATNGSGQAT-STAELLVK   98 (194)
T ss_dssp             EESSSBCCTTTSTTCEEEEETTEEEEEESSCCGGGCEEEEEEEEETTEEEE-EEEEEEEE
T ss_pred             EECCEEcccccCCceEEEeCCCEEEEEECCCCcccCEEEEEEEEcCCceEe-EEEEEEEc
Confidence            56787776542  334444444  899999999999999999999988754 45778887

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=98.94  E-value=9.4e-10  Score=75.69  Aligned_cols=61  Identities=15%  Similarity=0.182  Sum_probs=40.5

Q ss_pred             cCeEcCcC--ccceEEecCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeCCCCCCC
Q psy7035           4 SNVQLYNN--ISAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGLGIPAE   65 (70)
Q Consensus         4 ng~~l~~~--~~~~~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~p~~~~~   65 (70)
                      +|..+...  ..+.....+++|.|.+++.+|+|.|+|.|+|..|.. +..+.|.|..++..++.
T Consensus       388 ~~~~~~~~~~~~~~~~~~~g~L~i~~v~~~D~G~Y~C~a~N~~G~~-~~~~~l~v~~~~~~~~~  450 (452)
T 3zyi_A          388 NGTVLSHASRHPRISVLNDGTLNFSHVLLSDTGVYTCMVTNVAGNS-NASAYLNVSTAGTHHHH  450 (452)
T ss_dssp             TSCEECSSCCCSSCEECTTSCEECSSCCTTCCEEEEEEEECSSCEE-EEEEEEEC---------
T ss_pred             CCcEeccCCCCCCEEECCCCeEEEeecCHHHCEEEEEEEEcCCCcE-EEEEEEEEEcccccCCC
Confidence            44555432  223445678999999999999999999999999986 44789999877665443

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}

Probab=98.94  E-value=1.4e-09  Score=76.53  Aligned_cols=61  Identities=18%  Similarity=0.193  Sum_probs=47.9

Q ss_pred             cccCeEcCcCccceEEe--cCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeCCCCC
Q psy7035           2 SFSNVQLYNNISAGVIV--SNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGLGIP   63 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~~--~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~p~~~   63 (70)
                      +|||.++....+..+..  ..++|.|.+++.+|+|.|+|.|.|..|...+ .+.|.|.++|...
T Consensus       326 ~k~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~-~~~l~V~~~P~~~  388 (570)
T 3b43_A          326 YKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASS-STSLKVKEPPVFR  388 (570)
T ss_dssp             EETTEECCCSSSEEEEEETTEEEEEEESCCGGGCEEEEEEEEBTTBCCEE-EEEECEECCCEEC
T ss_pred             eECCEECCCCCcEEEEEECCEEEEEECCCCcccCEEEEEEEEeCCCEEEE-EEEEEecCCCeee
Confidence            57888887665444333  3458999999999999999999999998644 6899999877543

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A

Probab=98.94  E-value=1.4e-09  Score=69.19  Aligned_cols=55  Identities=22%  Similarity=0.302  Sum_probs=43.2

Q ss_pred             cccCeEcCcCccceEEecC--CEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEE
Q psy7035           2 SFSNVQLYNNISAGVIVSN--QSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYD   57 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~~~~--~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~   57 (70)
                      ++||.++....+..+...+  .+|.|.+++.+|+|.|+|.|+|..|.... .+.|.|.
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~-~~~l~V~  283 (284)
T 2rik_A          227 HKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSYTC-VGSITLK  283 (284)
T ss_dssp             EETTEEECBTTTEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEEEEE-EEEEEEC
T ss_pred             EECCEECcCCCCEEEEEcCCEEEEEEcCCCcccCEEEEEEEEeCCCceeE-EEEEEEc
Confidence            5788888766554444333  48999999999999999999999998644 6788875

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.94  E-value=5.3e-10  Score=74.28  Aligned_cols=58  Identities=21%  Similarity=0.181  Sum_probs=43.4

Q ss_pred             cccCeEcCcCccceEE---------ecCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeCC
Q psy7035           2 SFSNVQLYNNISAGVI---------VSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGL   60 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~---------~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~p   60 (70)
                      ++||+++.........         ..+++|+|.+++.+|+|.|+|.|+|..|.. +..+.|.|..+|
T Consensus       281 ~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~G~~-~~~~~l~V~~~P  347 (347)
T 2ifg_A          281 LFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQA-SASIMAAFMDNP  347 (347)
T ss_dssp             EETTEECCCCSSEEEEECCCCTTCCCEEEEEEESSCCGGGCEEEEEEEEETTEEE-EEEEEECSCCCC
T ss_pred             EeCCEECCCCcceeeEEEeecCCCcccceEEEECCCCcccCceEEEEEecCCCce-eeEEEEEecCCC
Confidence            4788888744332221         125689999999999999999999999975 557888887544

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A

Probab=98.94  E-value=9.6e-10  Score=67.67  Aligned_cols=48  Identities=19%  Similarity=0.251  Sum_probs=36.6

Q ss_pred             cccCeEcCcCccceEEecCCEEEEcc-cCCCCCeeeEEEeEeCCCcccceeEEEEEE
Q psy7035           2 SFSNVQLYNNISAGVIVSNQSLVLQN-VSRARAGHYTCVGSNGEGDGQSNAQKTAYD   57 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~~~~~tL~i~~-v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~   57 (70)
                      +|||++|..+       .+++|.|.+ ++.+|+|.|+|.|.|..|. .+..+.+.|.
T Consensus        32 ~k~g~~l~~~-------~~~~L~I~~~~~~~D~G~Y~C~a~n~~g~-~~~~~~~~v~   80 (186)
T 1jbj_A           32 EKNGQELPQK-------HDKHLVLQDFSEVEDSGYYVCYTPASNKN-TYLYLKARVG   80 (186)
T ss_dssp             EETTEEECSC-------CCSEEEEESCCTTTSCEEEEEECSSCCCC-CCEEECCCCC
T ss_pred             EECCEECCCC-------CCCEEEECCCCccccCEEEEEEEEeCCCc-EEEEEEEEEe
Confidence            5677776543       357999999 9999999999999999997 3434444443

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B

Probab=98.94  E-value=9.2e-10  Score=67.54  Aligned_cols=40  Identities=13%  Similarity=0.001  Sum_probs=35.2

Q ss_pred             cCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeCCC
Q psy7035          19 SNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGLG   61 (70)
Q Consensus        19 ~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~p~   61 (70)
                      .+++|+|.+++++|+|.|+|.|.|..|   +..+.|.|..+|.
T Consensus        58 ~~~sL~I~~v~~~DsG~Y~C~~~n~~~---~~~~~L~V~~~~~   97 (171)
T 1ccz_A           58 VSGSLTIYNLTSSDEDEYEMESPNITD---TMKFFLYVLEMVS   97 (171)
T ss_dssp             TTCCEEECSCCGGGCEEEEEECTTCCS---CEEEEEEEECCCC
T ss_pred             CCCeEEECCCChhhCceEEEEEeCCCC---cEEEEEEEECcCC
Confidence            678999999999999999999999887   6678999985543

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A

Probab=98.94  E-value=1.7e-09  Score=71.41  Aligned_cols=53  Identities=19%  Similarity=0.244  Sum_probs=43.8

Q ss_pred             cccCeEcCcCccceEEecCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEE
Q psy7035           2 SFSNVQLYNNISAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYD   57 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~   57 (70)
                      ++||+++..+.+  +.+.+++|+|.+++.+|+|.|+|.|+|..|... ..+.|.|.
T Consensus       329 ~~~g~~~~~~~~--~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~-~~~~l~V~  381 (382)
T 1cs6_A          329 LRDGQPLASQNR--IEVSGGELRFSKLVLEDSGMYQCVAENKHGTVY-ASAELTVQ  381 (382)
T ss_dssp             EETTEECCCCSS--EEEETTEEEESSCCGGGCEEEEEEEEETTEEEE-EEEEEEEE
T ss_pred             EECCEECCCCce--EEEECCEEEECcCCcccCEEEEEEEEeCCCeEE-EEEEEEEe
Confidence            578888876543  344688999999999999999999999999864 47888886

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}

Probab=98.93  E-value=3.7e-09  Score=67.48  Aligned_cols=45  Identities=16%  Similarity=0.185  Sum_probs=35.6

Q ss_pred             CEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeCCCCCCCC
Q psy7035          21 QSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGLGIPAEP   66 (70)
Q Consensus        21 ~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~p~~~~~p   66 (70)
                      ++|+|.+++.+|+|.|+|.|.|..|... ..+.|+|...|.....|
T Consensus       242 ~~L~I~~v~~~D~G~Y~C~a~N~~G~~~-~~~~l~v~~~~~~~~~~  286 (289)
T 3mjg_X          242 SILHIPSAELEDSGTYTCNVTESVNDHQ-DEKAINITVVESGHHHH  286 (289)
T ss_dssp             EEEEESSCCSSCCEEEEEEEEETTTTEE-EEEEEEEEEEC------
T ss_pred             EEEEEcccChhhCcEEEEEeecCCCCce-eEEEEEEEEEecCcccc
Confidence            6899999999999999999999999864 47899999887765554

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}

Probab=98.93  E-value=1.1e-09  Score=70.65  Aligned_cols=56  Identities=16%  Similarity=0.186  Sum_probs=44.3

Q ss_pred             cccCeEcCcCcc--ceEEecCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEE
Q psy7035           2 SFSNVQLYNNIS--AGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYD   57 (70)
Q Consensus         2 ~~ng~~l~~~~~--~~~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~   57 (70)
                      ++||.++.....  +.....+++|.|.+++.+|+|.|+|.|.|..|...+..+.|.|.
T Consensus       143 ~k~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~v~  200 (304)
T 2yd9_A          143 FKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYECVATNSAGVRYSSPANLYVR  200 (304)
T ss_dssp             EETTEECCGGGGTTSEEECTTSCEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEE
T ss_pred             EECCEECcCCCCcceEEeCCCeEEEEccCCcccCEEEEEEEEeCCCCEEeccEEEEEE
Confidence            577888764322  23356778999999999999999999999999887766777775

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}

Probab=98.93  E-value=1.2e-09  Score=66.45  Aligned_cols=50  Identities=16%  Similarity=0.241  Sum_probs=40.8

Q ss_pred             cccCeEcCcCccceEEecCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEE
Q psy7035           2 SFSNVQLYNNISAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAY   56 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V   56 (70)
                      ++||.++......   ..+++|.|.+++  |+|.|+|.|.|..|...|..+.|.|
T Consensus       142 ~~~~~~~~~~~~~---~~~~~L~i~~~~--d~G~Y~C~a~N~~g~~~s~~~~l~V  191 (195)
T 2c5d_C          142 LQDAVPLATAPGH---GPQRSLHVPGLN--KTSSFSCEAHNAKGVTTSRTATITV  191 (195)
T ss_dssp             EESSCBSSSSTTS---SCCEEEEECCCS--SCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             EECCEeccCCCCc---CCCCeEEEcccc--cCceEEEEEEcCCCceEEEEEEEEE
Confidence            4677777654332   467899999998  8999999999999998878899999

>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A

Probab=98.93  E-value=3.2e-10  Score=69.63  Aligned_cols=59  Identities=10%  Similarity=0.122  Sum_probs=42.3

Q ss_pred             cccCeEcCcCcc-ceEEecCCEEEEcccCCCCCeeeEEEeEeCC-C-cccceeEEEEEEeCC
Q psy7035           2 SFSNVQLYNNIS-AGVIVSNQSLVLQNVSRARAGHYTCVGSNGE-G-DGQSNAQKTAYDIGL   60 (70)
Q Consensus         2 ~~ng~~l~~~~~-~~~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~-G-~~~s~~~~L~V~~~p   60 (70)
                      +|||.++....+ ......+++|.|.+++++|+|.|+|.|.|.. | ...+..+.|.|.+.|
T Consensus        38 ~k~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~~g~~~~s~~~~l~V~~~~   99 (198)
T 1ugn_A           38 YREKKTAPWITRIPQELVKKGQFPIPSITWEHTGRYRCYYGSDTAGRSESSDPLELVVTGAY   99 (198)
T ss_dssp             EESSSCCHHHHTSCHHHHTTTEEEESSCCGGGCEEEEEEEEETTTEECCCCCCEEEEEECSS
T ss_pred             EECCccccccccccccCCcccEEEECCCCHHHCeEEEEEEECCCCCcccCCccEEEEEcccc
Confidence            466666532111 1112357899999999999999999999987 6 344778999998643

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=98.93  E-value=1.4e-09  Score=74.79  Aligned_cols=55  Identities=15%  Similarity=0.238  Sum_probs=41.2

Q ss_pred             cccCeEcCc--CccceEEecCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEE
Q psy7035           2 SFSNVQLYN--NISAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYD   57 (70)
Q Consensus         2 ~~ng~~l~~--~~~~~~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~   57 (70)
                      +++|.++..  ...+..+..+++|+|.+++++|+|.|+|.|+|..|.. +..+.|.|.
T Consensus       420 ~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~-~~~~~l~V~  476 (477)
T 2id5_A          420 LSPRKHLVSAKSNGRLTVFPDGTLEVRYAQVQDNGTYLCIAANAGGND-SMPAHLHVR  476 (477)
T ss_dssp             ECTTSCBC-------CEECTTSCEEESSCCSTTCEEEEEEEEETTEEE-EEEEEEEEE
T ss_pred             EECCccccccCCCceEEeCCCCEEEEeeCChHHCEEEEEEEEeCCCcE-EEEEEEEEe
Confidence            456666643  2233445578899999999999999999999999986 667888885

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}

Probab=98.93  E-value=1.4e-09  Score=67.77  Aligned_cols=57  Identities=18%  Similarity=0.217  Sum_probs=41.2

Q ss_pred             cccCeEcCcCccceEEecCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeCCCCCCCC
Q psy7035           2 SFSNVQLYNNISAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGLGIPAEP   66 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~p~~~~~p   66 (70)
                      ++||.++...       .+++|.|.+++.+|+|.|+|.|.|..|...+..+.|.|.. ++.+..|
T Consensus       153 ~~~~~~~~~~-------~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~-~~~~~~P  209 (218)
T 3k0w_A          153 FKNELPLTHE-------TKKLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDE-LNNLGHP  209 (218)
T ss_dssp             EETTEECTTC-------CSSEEEESSCCGGGCEEEEEEEECSSCEEECCCEEEEECC--------
T ss_pred             EECCEECCCC-------CCCEEEEeecChhcCEEEEEEEEcCCCCceeeeEEEEEeC-CccCCCC
Confidence            3556555433       2468999999999999999999999999889999999974 3334444

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A

Probab=98.92  E-value=2.5e-09  Score=64.75  Aligned_cols=55  Identities=31%  Similarity=0.264  Sum_probs=43.6

Q ss_pred             cccCeEcCcCccceEEe--cCCEEEEcc-cCCCCCeeeEEEeEeCCCcccceeEEEEEE
Q psy7035           2 SFSNVQLYNNISAGVIV--SNQSLVLQN-VSRARAGHYTCVGSNGEGDGQSNAQKTAYD   57 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~~--~~~tL~i~~-v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~   57 (70)
                      ++||+++..+.+..+..  .+++|.|.+ ++.+|+|.|+|.|+|..|.. +..+.|.|.
T Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~N~~g~~-~~~~~l~V~  196 (197)
T 2j8h_A          139 QKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGID-QKTVELDVA  196 (197)
T ss_dssp             EESSCEECSSSSCEEEECSSEEEEECTTCCCGGGCEEEEEEEEETTEEE-EEEEEEEEE
T ss_pred             EECCEEeecCCCEEEEEcCCceEEEEeCCCCcccCEeEEEEEEeCCCcE-eEEEEEEEe
Confidence            57888887655444332  346899999 99999999999999999985 668888886

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J

Probab=98.92  E-value=2.3e-09  Score=74.51  Aligned_cols=40  Identities=33%  Similarity=0.330  Sum_probs=37.4

Q ss_pred             CEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeCC
Q psy7035          21 QSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGL   60 (70)
Q Consensus        21 ~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~p   60 (70)
                      ++|+|.+++++|+|.|+|.|.|..|...+.++.|.|...|
T Consensus       509 ~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~~l~V~~~p  548 (585)
T 2ocw_A          509 VSLTLNLVTRADEGWYWCGVKQGHFYGETAAVYVAVEERK  548 (585)
T ss_pred             EEEEECCCCcccCeEEEEEeEeCCCccEEEEEEEEEEeee
Confidence            4899999999999999999999999888878999999877

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A

Probab=98.92  E-value=9.4e-10  Score=62.70  Aligned_cols=37  Identities=16%  Similarity=0.159  Sum_probs=32.7

Q ss_pred             CCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEE
Q psy7035          20 NQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYD   57 (70)
Q Consensus        20 ~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~   57 (70)
                      +.+|.|.+++.+|+|.|+|.|.|..|.. +..+.|.|.
T Consensus        71 ~~~L~I~~v~~~D~G~Y~C~a~N~~G~~-~~~~~L~V~  107 (108)
T 3cx2_A           71 LFELHITDAQPAFTGSYRCEVSTKDKFD-CSNFNLTVH  107 (108)
T ss_dssp             EEEEEECSCCGGGCEEEEEEEECSSCEE-EEEEEEEEE
T ss_pred             eEEEEEecCCCccCEEEEEEEecCCCce-EEEEEEEEe
Confidence            4689999999999999999999999986 447888885

>2edo_A CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte activation marker blast-1, BCM1 surface antigen, leukocyte antigen MEM-102, TCT.1; NMR {Homo sapiens}

Probab=98.92  E-value=1.2e-09  Score=64.18  Aligned_cols=45  Identities=16%  Similarity=0.107  Sum_probs=38.2

Q ss_pred             cCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeCCCCC
Q psy7035          19 SNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGLGIP   63 (70)
Q Consensus        19 ~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~p~~~   63 (70)
                      .+++|+|.+++.+|+|.|.|.+.|..+......+.|.|...+..|
T Consensus        71 ~~~sL~I~nv~~~DsG~Y~c~v~~~~~~~~~~~~~L~V~~~~~~P  115 (121)
T 2edo_A           71 QSGALYISKVQKEDNSTYIMRVLKKTGNEQEWKIKLQVLDPVPKP  115 (121)
T ss_dssp             TTCCEEESSCCGGGCSEEEEEEEETTTEEEECCEECEEECCSCCC
T ss_pred             CCceEEEeCCCHHHCeEEEEEEEcCCCcEEEEEEEEEEECCCCCC
Confidence            678999999999999999999999877667778999998544433

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*

Probab=98.92  E-value=1.1e-09  Score=75.47  Aligned_cols=60  Identities=18%  Similarity=0.159  Sum_probs=46.7

Q ss_pred             cccCeEcCcCccceEEecC-------CEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeCCCC
Q psy7035           2 SFSNVQLYNNISAGVIVSN-------QSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGLGI   62 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~~~~-------~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~p~~   62 (70)
                      ++||+++.....+.....+       .+|.|.+++.+|+|.|+|.|.|..|. .+..+.|.|.+.|..
T Consensus       349 ~k~g~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~-~~~~~~l~V~~~P~i  415 (524)
T 2ec8_A          349 IYMNRTFTDKWEDYPKSENESNIRYVSELHLTRLKGTEGGTYTFLVSNSDVN-AAIAFNVYVNTKPEI  415 (524)
T ss_dssp             ESSSCBCSSSBCCEESCCSSSCCEEEEEEEECSCCGGGCEEEEEEEECSSCE-EEEEEEEEECEEEEE
T ss_pred             EECCeeccCCccceeEEccCCCceeEEEEEEeecCcccCeEEEEEEEecCce-EEEEEEEEEecCCeE
Confidence            5788888655433333333       48999999999999999999999998 456799999877753

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}

Probab=98.92  E-value=8.1e-10  Score=70.73  Aligned_cols=42  Identities=12%  Similarity=0.168  Sum_probs=33.9

Q ss_pred             ecCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeCC
Q psy7035          18 VSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGL   60 (70)
Q Consensus        18 ~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~p   60 (70)
                      ..+++|+|.+++.+|+|.|+|.|+|..|.. +..+.|.|...|
T Consensus       249 ~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~-~~~~~l~V~~~P  290 (290)
T 2o26_X          249 ERQETLTISSARVDDSGVFMCYANNTFGSA-NVTTTLKVVEKG  290 (290)
T ss_dssp             EEEEEEEESSCCSSSCEEEEEEEECSSCEE-EEEEEECC----
T ss_pred             EEEEEEEEcCCCcccCeEEEEEEeCCCCcE-EEEEEEEEEeCC
Confidence            345799999999999999999999999987 667889887543

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}

Probab=98.92  E-value=1.3e-09  Score=69.90  Aligned_cols=60  Identities=15%  Similarity=0.138  Sum_probs=46.1

Q ss_pred             cccCeEcCcCccceEE--ecCC--EEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeCCCC
Q psy7035           2 SFSNVQLYNNISAGVI--VSNQ--SLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGLGI   62 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~--~~~~--tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~p~~   62 (70)
                      +|||.++..+..+..+  ..++  +|.|.+++.+|+|.|+|.|.|..|.. +..+.|.|.+.|..
T Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~-~~~~~l~V~~~p~~  102 (305)
T 2nzi_A           39 YRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRATNQGGSV-SGTASLEVEVPAKI  102 (305)
T ss_dssp             EETTEECCCCSSSEEEEEETTTEEEEEESSCCGGGCSEEEEEEEETTEEE-EEEEEEEECEEEEE
T ss_pred             EECCEEcccCCCeEEEEECCCCEEEEEEccCChhhCeEEEEEEEcCCCCc-cceEEEEEecCCcc
Confidence            5788888754433322  3444  89999999999999999999998874 66889999876643

>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens}

Probab=98.92  E-value=5e-10  Score=68.80  Aligned_cols=36  Identities=14%  Similarity=0.120  Sum_probs=31.3

Q ss_pred             CEEEEcccCCCCCeeeEEEeEeCCC----cccceeEEEEE
Q psy7035          21 QSLVLQNVSRARAGHYTCVGSNGEG----DGQSNAQKTAY   56 (70)
Q Consensus        21 ~tL~i~~v~~~D~G~Y~C~a~N~~G----~~~s~~~~L~V   56 (70)
                      ++|+|.+++.+|+|.|+|.|.|..+    +..|+++.|.|
T Consensus       156 ~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~s~~S~~~~l~V  195 (196)
T 2d3v_A          156 ALFPVGPVTPSHRWMLRCYGSRRHILQVWSEPSDLLEIPV  195 (196)
T ss_dssp             EEEECCCCBTTBCEEEEEEEEETTEEEEECCCCCCEEECC
T ss_pred             eEEEeeecCcccCeeEEEEEEccCCCCccCCCCccEEEEe
Confidence            6899999999999999999999765    56677887766

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*

Probab=98.92  E-value=9.6e-10  Score=72.67  Aligned_cols=59  Identities=20%  Similarity=0.178  Sum_probs=46.9

Q ss_pred             cccCeEcCcCccceEEecCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeCCCC
Q psy7035           2 SFSNVQLYNNISAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGLGI   62 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~p~~   62 (70)
                      ++||.++..+.. .....+++|.|.+++.+|+|.|+|.|.|..|.. +..+.|.|.+.|..
T Consensus       257 ~~~~~~~~~~~~-~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~V~~~p~~  315 (404)
T 3p3y_A          257 YKKGGDLPSDKA-KFENFNKALRITNVSEEDSGEYFCLASNKMGSI-RHTISVRVKAAPYW  315 (404)
T ss_dssp             EETTBCCCTTTE-EEEGGGTEEEESSCCGGGCEEEEEEEECSSCEE-EEEEEEEEEEEEEE
T ss_pred             EECCEECCCCcc-cccccCceEEEccCCHhHCEEEEEEEEeCCCcE-EEEEEEEEeCCCee
Confidence            467777765432 444567899999999999999999999999974 55889999987743

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}

Probab=98.91  E-value=1.7e-09  Score=64.87  Aligned_cols=61  Identities=15%  Similarity=0.249  Sum_probs=42.1

Q ss_pred             cccCeEcCc-CccceEEecCCEEEEcccCCCCCeeeEEEeEeCCC-cccceeEEEEEEeCCCC
Q psy7035           2 SFSNVQLYN-NISAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEG-DGQSNAQKTAYDIGLGI   62 (70)
Q Consensus         2 ~~ng~~l~~-~~~~~~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G-~~~s~~~~L~V~~~p~~   62 (70)
                      ++||..+.. ...+.....+++|.|.+++.+|+|.|+|.|.|..+ ...+..+.|.|...|..
T Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~l~v~~~p~~   99 (189)
T 2v5t_A           37 LYHNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAI   99 (189)
T ss_dssp             EC-----CBCCCTTEEECTTSCEEETTCCGGGCEEEEEEEEETTTTEEEEEEEEEEEEEEEEE
T ss_pred             EECCccceeccCCeEEEecCCCEEEeeCCHhHCcEEEEEEEEcCCCceEEEEEEEEecCCCCc
Confidence            466766653 33344556788999999999999999999999874 44456788888877643

>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=98.91  E-value=6.9e-10  Score=68.06  Aligned_cols=57  Identities=16%  Similarity=0.188  Sum_probs=40.4

Q ss_pred             cccCeEcCcCc-cceEEecCCEEEEcccCCCCCeeeEEEeEeCCCc-ccceeEEEEEEe
Q psy7035           2 SFSNVQLYNNI-SAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGD-GQSNAQKTAYDI   58 (70)
Q Consensus         2 ~~ng~~l~~~~-~~~~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~-~~s~~~~L~V~~   58 (70)
                      +|||.++.... .......+++|.|.+++++|+|.|+|.|.|..|. ..|.++.|.|..
T Consensus        37 ~k~g~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~s~~~~l~V~~   95 (188)
T 1oll_A           37 HFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCIYRVGELWSEPSNLLDLVVTE   95 (188)
T ss_dssp             EETTEEEEEECCSSCTTCCEEEEEESSCCGGGCEEEEEEEEETTEECCCCCCEEEEEES
T ss_pred             EECCCcccccccccCCCcceeEEEeCcCCcccCeEEEEEecCCCCCCCCCCceEEEecc
Confidence            46776654211 1111234578999999999999999999997653 447788999974

>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=98.91  E-value=5.5e-10  Score=68.48  Aligned_cols=54  Identities=20%  Similarity=0.139  Sum_probs=39.7

Q ss_pred             cccCeEcCcCccceEEecCCEEEEcccCCCCCeeeEEEeEeCC--CcccceeEEEEEE
Q psy7035           2 SFSNVQLYNNISAGVIVSNQSLVLQNVSRARAGHYTCVGSNGE--GDGQSNAQKTAYD   57 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~--G~~~s~~~~L~V~   57 (70)
                      +|||..+...  +.....+++|.|.+|+++|+|.|+|.|.|..  .+..|+++.|.|.
T Consensus       132 ~k~g~~~~~~--~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~s~~S~~~~l~V~  187 (188)
T 1oll_A          132 LKEGRSSHVQ--RGYGKVQAEFPLGPVTTAHRGTYRCFGSYNNHAWSFPSEPVKLLVT  187 (188)
T ss_dssp             EEESSSCEEE--EEECSSEEEEEEEECCGGGCEEEEEECEEETTEECCCCCCEEEEEE
T ss_pred             EECCcccccc--ccCCCceeEEEECCCCcCCCcEEEEEEEcCCCcCCCCCCcEEEEec
Confidence            4566554321  1122356799999999999999999999964  3567889999985

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A

Probab=98.91  E-value=9.6e-10  Score=71.25  Aligned_cols=55  Identities=22%  Similarity=0.283  Sum_probs=42.4

Q ss_pred             cccCeEcCcCccceEEecCCEEEEc-ccCCCCCeeeEEEeEeCCCcccceeEEEEEEeCCC
Q psy7035           2 SFSNVQLYNNISAGVIVSNQSLVLQ-NVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGLG   61 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~~~~~tL~i~-~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~p~   61 (70)
                      ++||.++..+    ....+++|.|. +++.+|+|.|+|.|+|..|.. +..+.|.|.+.+.
T Consensus       268 ~~~~~~~~~~----~~~~~~~L~i~~~v~~~d~G~Y~C~a~N~~G~~-~~~~~l~V~~~~~  323 (331)
T 3u83_A          268 TTLNGSLPKG----VEAQNRTLFFKGPINYSLAGTYICEATNPIGTR-SGQVEVNITEAAA  323 (331)
T ss_dssp             EETTBSCCTT----EEEETTEEEECSCCCGGGCEEEEEEEEETTEEE-EEEEEECCBC---
T ss_pred             EECCCccccc----ceecCcEEEEeCCCccccCeEEEEEEEeccccc-eEEEEEEEeccch
Confidence            3566665433    33478899999 999999999999999999986 6689999987765

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}

Probab=98.91  E-value=8.6e-10  Score=78.11  Aligned_cols=57  Identities=11%  Similarity=0.043  Sum_probs=44.6

Q ss_pred             cccCeEcCcCccceEEecCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeCCC
Q psy7035           2 SFSNVQLYNNISAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGLG   61 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~p~   61 (70)
                      +|||++|..+.+.  ...+++|.|.+++++|+|.|+|.|.|..|.... .+.|.|.+.|.
T Consensus       361 ~k~g~~l~~~~~~--~~~~~~L~I~~v~~~D~G~YtC~A~N~~g~~~~-~~~L~V~~~P~  417 (527)
T 3qs9_E          361 TFSRKSFPCEQKG--LDNGYSISKFCNHKHQPGEYIFHAENDDAQFTK-MFTLNIRRKPQ  417 (527)
T ss_dssp             EETTEEEECBCCB--CSSSSEEEEECCCTTCCSCEEEEEEETTEEEEE-EEEEC--CCCE
T ss_pred             EECCEECcCCccc--ccCCcEEEEecCCcccCEEEEEEEEeCCCcEEE-EEEEEEecCCe
Confidence            5788888654432  236779999999999999999999999998655 78999987774

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4

Probab=98.91  E-value=1.7e-09  Score=65.74  Aligned_cols=49  Identities=22%  Similarity=0.341  Sum_probs=40.0

Q ss_pred             EEecCCEEEEcccCCCCCeeeEEEeEeCCCc-ccceeEEEEEEeCCCCCC
Q psy7035          16 VIVSNQSLVLQNVSRARAGHYTCVGSNGEGD-GQSNAQKTAYDIGLGIPA   64 (70)
Q Consensus        16 ~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~-~~s~~~~L~V~~~p~~~~   64 (70)
                      +.+.+++|.|.+++++|+|.|+|.|.|..|. ..+..+.|.|.+.|..+.
T Consensus        60 ~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~g~~~~~~~~~l~V~~~p~~~~  109 (212)
T 1f97_A           60 VTFSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVLVPPSKPT  109 (212)
T ss_dssp             EEEETTEEEESCCCGGGCEEEEEEEEETTSSSEEEEEEEEEEEBCCCCCE
T ss_pred             EEeeceeEEEcccCcccCeEEEEEEEccCCCcccEEEEEEEEEcCCCCcc
Confidence            3445699999999999999999999999873 335678999998876543

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A

Probab=98.91  E-value=5.9e-09  Score=66.24  Aligned_cols=64  Identities=19%  Similarity=0.231  Sum_probs=48.6

Q ss_pred             cccCeEcCcCccceEEe--cCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeCCCCCCCC
Q psy7035           2 SFSNVQLYNNISAGVIV--SNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGLGIPAEP   66 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~~--~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~p~~~~~p   66 (70)
                      ++||.++....+.....  .+.+|.|.+++.+|+|.|+|.|.|..|.. +..+.|.|.+.|.....|
T Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~V~~~p~~~~~~  199 (284)
T 2rik_A          134 YKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSA-SSSTSLKVKEPPVFRKKP  199 (284)
T ss_dssp             EETTEECCCSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEECSSCEE-EEEEEEEEECCCBCCSCC
T ss_pred             EECCEECcCCCcEEEEEcCCEEEEEECCCCcccCEEEEEEEEcCCCce-eEEEEEEEecCCcceeCC
Confidence            57788886554433332  34589999999999999999999999975 457899999887654444

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A

Probab=98.91  E-value=4.7e-09  Score=64.85  Aligned_cols=59  Identities=17%  Similarity=0.132  Sum_probs=43.7

Q ss_pred             cccCeEcCcCccceEEec---CCEEEEccc-CCCCCeeeEEEeEeCCCcccceeEEEEEEeCCC
Q psy7035           2 SFSNVQLYNNISAGVIVS---NQSLVLQNV-SRARAGHYTCVGSNGEGDGQSNAQKTAYDIGLG   61 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~~~---~~tL~i~~v-~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~p~   61 (70)
                      ++||+++...........   +.+|.|.++ +.+|+|.|+|.|.|..|.. +..+.|.|.+.+.
T Consensus        41 ~k~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C~a~n~~g~~-~~~~~l~V~~~~~  103 (212)
T 2yd6_A           41 NKKGKKVSNQRFEVIEFDDGSGSVLRIQPLRTPRDEAIYECVASNNVGEI-SVSTRLTVLREDQ  103 (212)
T ss_dssp             EETTEECCCTTEEEEEEGGGTEEEEEECSCCTTTTCEEEEEEEEETTEEE-EEEEEEEEECGGG
T ss_pred             EECCcCCCCCceeEEEEcCCCceEEEEeccCCCCCCeEEEEEEEcCCCcE-EEEEEEEEeccCc
Confidence            577888765432222222   346999999 5999999999999999974 5578999987643

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}

Probab=98.90  E-value=5.1e-09  Score=68.72  Aligned_cols=58  Identities=17%  Similarity=0.128  Sum_probs=43.5

Q ss_pred             cccCeEcCcCccceEEecCCEEEEcccCCCCCeeeEEEeEeC--CCccc---ceeEEEEEEeCC
Q psy7035           2 SFSNVQLYNNISAGVIVSNQSLVLQNVSRARAGHYTCVGSNG--EGDGQ---SNAQKTAYDIGL   60 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~~~~~tL~i~~v~~~D~G~Y~C~a~N~--~G~~~---s~~~~L~V~~~p   60 (70)
                      +|||.++..+..+.. ..+++|.|.+++.+|+|.|+|.|.|.  .|...   +..+.|.|...|
T Consensus       164 ~k~~~~l~~~~~~~~-~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~g~~~~~~s~~~~l~V~~~~  226 (329)
T 3oq3_B          164 YKNNQELIIDGTKYS-QSGQNLIIHNPELEDSGRYDCYVHYDDVRIKNDIVVSRCKILTVIPSQ  226 (329)
T ss_dssp             EETTEECCCSSSSEE-EETTEEEECSCCGGGCEEEEEEEEECCTTSSSCEEEEEEEEEEEECCC
T ss_pred             EECCccCCCCCceEe-cCCCEEEEeecChhhCEEEEEEEEecccCCCceeEEEeeEEEEEECCC
Confidence            578888864433333 34899999999999999999999997  65432   334788998665

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae}

Probab=98.90  E-value=3.7e-09  Score=65.93  Aligned_cols=38  Identities=21%  Similarity=0.375  Sum_probs=31.8

Q ss_pred             cCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEE
Q psy7035          19 SNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAY   56 (70)
Q Consensus        19 ~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V   56 (70)
                      .+++|.|.+++.+|+|.|+|.|+|..|...+....+.|
T Consensus       211 ~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~g~~~~~~~l  248 (250)
T 2fbo_J          211 GARNLVIRAAKITDAGRVWCELATGQGELDADRSSTIL  248 (250)
T ss_dssp             TTTEEEECSCCGGGCEEEEEEEESSSSGGGEEEEEEEE
T ss_pred             CccEEEEecCCcccCEEEEEEecCCccccCccceeEEE
Confidence            45799999999999999999999988876666555554

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C

Probab=98.90  E-value=3.9e-09  Score=64.84  Aligned_cols=58  Identities=19%  Similarity=0.176  Sum_probs=44.6

Q ss_pred             cccCeEcCcCccc---eEEecCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeCC
Q psy7035           2 SFSNVQLYNNISA---GVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGL   60 (70)
Q Consensus         2 ~~ng~~l~~~~~~---~~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~p   60 (70)
                      ++||+++....+.   .....+.+|.|.+++.+|+|.|+|.|.|..|.. +..+.|.|...+
T Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~-~~~~~l~V~~~~  114 (231)
T 3ojm_B           54 LKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSI-NHTYHLDVVERS  114 (231)
T ss_dssp             EETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEEE-EEEEEEEEECCC
T ss_pred             EECCccccccccccceeeecCcceEEEecCCcccCEEEEEEEecccCcc-cccEEEEEEcCC
Confidence            5778887654332   334456689999999999999999999998875 557888888544

>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.90  E-value=3.8e-09  Score=62.35  Aligned_cols=56  Identities=16%  Similarity=0.179  Sum_probs=40.4

Q ss_pred             cccCeEcCcCcc---------ceEEecCC---EEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeCCC
Q psy7035           2 SFSNVQLYNNIS---------AGVIVSNQ---SLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGLG   61 (70)
Q Consensus         2 ~~ng~~l~~~~~---------~~~~~~~~---tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~p~   61 (70)
                      +|||++|..++.         +..+..+|   +|+|.+++.+|+|.|+|...+.    ...++.|.|...|.
T Consensus        41 ~knG~~l~~~~~~~~~~~~~~r~~i~~~g~~~~L~I~~v~~~D~G~Y~~~~~~~----~~ssA~L~V~~~p~  108 (112)
T 2e6q_A           41 FLNGEELKSNEPEGQVEPGALRYRIEQKGLQHRLILHAVKHQDSGALVGFSCPG----VQDSAALTIQESSG  108 (112)
T ss_dssp             EESSCBCCSSCCCTTSCTTSCEEEECCBTTEEEEEEESCCSTTCSEEEEEEETT----EEEEEEEEEECSSC
T ss_pred             EECCEECccCcccccccccccEEEEEeCCcEEEEEECCCCHHHCccEEEEEECC----eeEEEEEEEeCCCc
Confidence            689999976651         33333344   8999999999999998754442    23478999996553

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}

Probab=98.90  E-value=3.7e-09  Score=66.51  Aligned_cols=41  Identities=10%  Similarity=0.285  Sum_probs=34.2

Q ss_pred             cccCeEcCcCccceEEecC--C--EEEEcccCCCCCeeeEEEeEe
Q psy7035           2 SFSNVQLYNNISAGVIVSN--Q--SLVLQNVSRARAGHYTCVGSN   42 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~~~~--~--tL~i~~v~~~D~G~Y~C~a~N   42 (70)
                      +|||++|..+.+..+..+.  +  +|+|.+++.+|+|.|+|.|.|
T Consensus        38 ~kng~~l~~~~~~~~~~~~~~g~~~L~I~~v~~~D~G~Y~C~a~N   82 (207)
T 3rbs_A           38 IFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQD   82 (207)
T ss_dssp             EETTEEECSSSSCEEEECTTTCEEEEEESCCCGGGCEEEEEEEEE
T ss_pred             EECCEECccCCCEEEEEeCCCCEEEEEECCCChhhCEEEEEEEEC
Confidence            6899999876665555543  3  699999999999999999999

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*

Probab=98.89  E-value=1.5e-09  Score=71.78  Aligned_cols=62  Identities=16%  Similarity=0.177  Sum_probs=48.6

Q ss_pred             cccCeEcCc--CccceEEecCCEEEEc----ccCCCCCeeeEEEeEeCCCcccceeEEEEEEeCCCCC
Q psy7035           2 SFSNVQLYN--NISAGVIVSNQSLVLQ----NVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGLGIP   63 (70)
Q Consensus         2 ~~ng~~l~~--~~~~~~~~~~~tL~i~----~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~p~~~   63 (70)
                      +|||+++..  +.+..+...+++|.|.    +++.+|+|.|+|.|.|..|...+..+.|.|.+.|..+
T Consensus        52 ~k~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~~D~G~Y~C~a~n~~g~~~s~~~~l~V~~~p~~~  119 (404)
T 3p3y_A           52 TRNSRFFNIAKDPRVSMRRRSGTLVIDFRSGGRPEEYEGEYQCFARNKFGTALSNRIRLQVSKSPLWP  119 (404)
T ss_dssp             EETTEECCGGGCSSCBCCSSSCCCBCCCTTTCCTTSSCEEEEEEEECSSCEEEEEEEEEEECCCCCCC
T ss_pred             EECCEEeeeecCCcceEecCCceEEEEeccCCCCccCCEEEEEEEEcCCCeEeeeeEEEEEeccCccc
Confidence            578887753  2333333467888886    8999999999999999999988888999999877553

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4

Probab=98.89  E-value=2e-09  Score=64.58  Aligned_cols=49  Identities=14%  Similarity=0.179  Sum_probs=38.6

Q ss_pred             cccCeEcCcCccceEEecCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEE
Q psy7035           2 SFSNVQLYNNISAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYD   57 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~   57 (70)
                      ++||.++.....     .+.+|.|.++  +|+|.|+|.|+|..|...+.++.|.|+
T Consensus       134 ~~~~~~~~~~~~-----~~~~L~i~~~--~d~G~Y~C~a~N~~g~~~s~~~~l~Vk  182 (182)
T 1rhf_A          134 WRGTTKIGGPAP-----SPSVLNVTGV--TQSTMFSCEAHNLKGLASSRTATVHLQ  182 (182)
T ss_dssp             EETTEECSCSEE-----SSEEEEECCC--SSCEEEEEEEEETTEEEECCCEEEEEC
T ss_pred             EcCCeECCCCCC-----CceEEEEecc--ccCeEEEEEEECCCCCcccceEEEEeC
Confidence            456666643321     5679999999  599999999999999988888998874

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}

Probab=98.89  E-value=4.7e-09  Score=67.66  Aligned_cols=60  Identities=13%  Similarity=0.130  Sum_probs=39.4

Q ss_pred             cccCeEcCcCccceEEecC---CEEEEcccCC-CCCeeeEEEeEeCCCcccceeEEEEEEeCCCC
Q psy7035           2 SFSNVQLYNNISAGVIVSN---QSLVLQNVSR-ARAGHYTCVGSNGEGDGQSNAQKTAYDIGLGI   62 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~~~~---~tL~i~~v~~-~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~p~~   62 (70)
                      ++||+++...........+   .+|.|.+++. +|+|.|+|.|.|..|. .+..+.|.|.+.+..
T Consensus        41 ~k~g~~i~~~~~~~~~~~~~~~~~L~i~~~~~~~D~G~Y~C~a~n~~g~-~~~~~~l~V~~~~~~  104 (304)
T 2yd9_A           41 NKKGKKVNSQRFETIEFDESAGAVLRIQPLRTPRDENVYECVAQNSVGE-ITVHAKLTVLREDQL  104 (304)
T ss_dssp             C-------CTTEEEEEETTTTEEEEEECSCCTTTTCSEEEEEEECSSCE-ECCEEEEEEECGGGC
T ss_pred             EECCEECCCCceEEEEecCCCceEEEEecccccCCCeEEEEEEECCCCe-EEEEEEEEEeccccC
Confidence            4677777543222222344   4799999998 9999999999999998 466899999976543

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C*

Probab=98.88  E-value=1.1e-09  Score=69.37  Aligned_cols=41  Identities=17%  Similarity=0.212  Sum_probs=33.6

Q ss_pred             cCC--EEEEcccCCCCCeeeEEEeEeCCC-cccceeEEEEEEeC
Q psy7035          19 SNQ--SLVLQNVSRARAGHYTCVGSNGEG-DGQSNAQKTAYDIG   59 (70)
Q Consensus        19 ~~~--tL~i~~v~~~D~G~Y~C~a~N~~G-~~~s~~~~L~V~~~   59 (70)
                      .++  +|.|.+++++|+|.|+|.|.|..| ...|.++.|.|...
T Consensus        60 ~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~s~~~~l~V~~~  103 (218)
T 1uct_A           60 NETDPEFVIDHMDANKAGRYQCQYRIGHYRFRYSDTLELVVTGL  103 (218)
T ss_dssp             --CCCEEEECSCCGGGCEEEEEEEEETTTEEEECCCEEEEEECS
T ss_pred             cceeeEEEEcccccccCEEEEEEEEcCCCceeecCCEEEEEcCc
Confidence            345  999999999999999999999876 34567889999853

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}

Probab=98.87  E-value=3.4e-09  Score=63.70  Aligned_cols=55  Identities=24%  Similarity=0.219  Sum_probs=42.3

Q ss_pred             cccCeEcCcCccceEEecC--CEEEEcccCC-CCCeeeEEEeEeCCCcccceeEEEEEE
Q psy7035           2 SFSNVQLYNNISAGVIVSN--QSLVLQNVSR-ARAGHYTCVGSNGEGDGQSNAQKTAYD   57 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~~~~--~tL~i~~v~~-~D~G~Y~C~a~N~~G~~~s~~~~L~V~   57 (70)
                      ++||.++....+..+...+  ++|.|.++++ +|+|.|+|.|+|..|.. +..+.|.|.
T Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~V~  195 (197)
T 3lcy_A          138 FHGQKLLQNSENITIENTEHYTHLVMKNVQRKTHAGKYKVQLSNVFGTV-DAILDVEIQ  195 (197)
T ss_dssp             EETTEECCCCSSEEEEECSSEEEEEESSCCHHHHCEEEEEEEECSSCEE-EEEEEEEEE
T ss_pred             eECCEECCCCCceEEEEcCCEEEEEEccccchhhCceEEEEEEcCcCce-EEEEEEEEe
Confidence            5678888765544433322  6899999995 89999999999999986 557888886

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.87  E-value=3.3e-09  Score=61.01  Aligned_cols=58  Identities=12%  Similarity=0.076  Sum_probs=41.8

Q ss_pred             cccCeEcCcCccceEEec---CCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeCCCCCC
Q psy7035           2 SFSNVQLYNNISAGVIVS---NQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGLGIPA   64 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~~~---~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~p~~~~   64 (70)
                      +|||+++..+.+..+...   ..+|+|.+++.+|+|.|+|.+    |.. +..+.|.|...|..-.
T Consensus        48 ~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~----g~~-~~~~~L~V~~~p~~~~  108 (115)
T 2cr6_A           48 FLDKTPLHANELNEIDAQPGGYHVLTLRQLALKDSGTIYFEA----GDQ-RASAALRVTEKPSVFS  108 (115)
T ss_dssp             EESSCEECCSSSCCBCCBTTTBCCBEECSCCTTTCEEEEEEE----TTE-ECCEEEEEECCSSCCS
T ss_pred             EECCEECCCCCcEEEEEcCCCEEEEEEcCCChhhCEEEEEEE----CCe-eEEEEEEEECCCceec
Confidence            578888876654443322   237999999999999999994    433 3468999997775433

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1

Probab=98.87  E-value=3.7e-10  Score=65.41  Aligned_cols=56  Identities=20%  Similarity=0.191  Sum_probs=40.7

Q ss_pred             cccCeEcCcC--ccceEE--e-cC---CEEEEcccCCCCC-eeeEEEeEeCCCcccceeEEEEEEe
Q psy7035           2 SFSNVQLYNN--ISAGVI--V-SN---QSLVLQNVSRARA-GHYTCVGSNGEGDGQSNAQKTAYDI   58 (70)
Q Consensus         2 ~~ng~~l~~~--~~~~~~--~-~~---~tL~i~~v~~~D~-G~Y~C~a~N~~G~~~s~~~~L~V~~   58 (70)
                      ++||+++...  .+..+.  . .+   .+|+|.+++++|+ |.|+|.|.|..|... ..+.|.|..
T Consensus        49 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~~G~Y~C~a~N~~G~~~-~~~~l~V~~  113 (122)
T 2cry_A           49 SWKENVLESGTSGRYTVETISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDT-EIIRLKEQG  113 (122)
T ss_dssp             ESSSCEECSEEETTEEEEEEEETTEEEEEEECTTCCHHHHHSCEEEEEECSSCEEE-EEECCCCSC
T ss_pred             EECCEEccCCCCCCEEEEEecCCCceEEEEEEcCCChhhCCceEEEEEECCCCeEE-EEEEEEECC
Confidence            4677777642  222221  1 22   3899999999999 999999999999865 577888863

>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A

Probab=98.86  E-value=5.7e-09  Score=58.49  Aligned_cols=54  Identities=20%  Similarity=0.292  Sum_probs=38.5

Q ss_pred             cccCeEcCcCccceEEecCC--EEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeCC
Q psy7035           2 SFSNVQLYNNISAGVIVSNQ--SLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGL   60 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~~~~~--tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~p   60 (70)
                      +|||+++..+.+..+..++.  +|.|.+++.+|+|.|+|.    .|. .+..+.|.|...|
T Consensus        42 ~k~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~----~g~-~~~~~~l~V~~~p   97 (103)
T 2e7b_A           42 CYGNNVLRPGDKYSLRQEGAMLELVVRNLRPQDSGRYSCS----FGD-QTTSATLTVTALP   97 (103)
T ss_dssp             EESSSBCCCSSSEEEEECSSEEEEEECSCCTTTCCCEEEE----CSS-CBCCBCEEEECCC
T ss_pred             EECCEECCCCCcEEEEEcCCEEEEEEccCCcccCEEEEEE----ECC-cEEEEEEEEEecc
Confidence            56788886555444443333  599999999999999998    343 3456889998544

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*

Probab=98.86  E-value=6.4e-09  Score=63.39  Aligned_cols=47  Identities=19%  Similarity=0.164  Sum_probs=39.5

Q ss_pred             eEEecCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeCCC
Q psy7035          15 GVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGLG   61 (70)
Q Consensus        15 ~~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~p~   61 (70)
                      ..+..+++|.|.+++.+|+|.|+|.+.|..+...+..+.|.|...|.
T Consensus        65 ~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~  111 (208)
T 3r4d_A           65 EIIYSNGSLLFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQPVT  111 (208)
T ss_dssp             EEECTTSCEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEEEECCCC
T ss_pred             eEEecCCeEEEccccccCCeEEEEEEEcccCceeEEEEEEEeccCCC
Confidence            34456789999999999999999999999776677788999986543

>4hwn_A FC receptor-like A; FCRLA, FCRL, IG-C2 domain, IG superfamily, immune system, ST genomics, PSI-biology; 2.01A {Homo sapiens}

Probab=98.86  E-value=2.2e-09  Score=61.95  Aligned_cols=39  Identities=15%  Similarity=0.235  Sum_probs=33.9

Q ss_pred             cCCEEEEcccCCCCCeeeEEEeEeCCC--cccceeEEEEEE
Q psy7035          19 SNQSLVLQNVSRARAGHYTCVGSNGEG--DGQSNAQKTAYD   57 (70)
Q Consensus        19 ~~~tL~i~~v~~~D~G~Y~C~a~N~~G--~~~s~~~~L~V~   57 (70)
                      .+.+|.|.+|+++|+|.|+|.|.|..|  ...|+++.|.|.
T Consensus        58 ~~~~l~i~~v~~~dsG~Y~C~~~~~~~~~~~~S~~l~L~V~   98 (108)
T 4hwn_A           58 LSSEFQIPTASEDHSGSYWCEAATEDNQVWKQSPQLEIRVQ   98 (108)
T ss_dssp             SCCEEEESSCCGGGCEEEEEEEECTTSSSEEECCCEEECCB
T ss_pred             cccEEEeCccCcccCeEEEEEEEeCCCceeccCCCEEEEEE
Confidence            567899999999999999999999865  346888999886

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R

Probab=98.85  E-value=1.1e-08  Score=66.00  Aligned_cols=51  Identities=20%  Similarity=0.178  Sum_probs=39.5

Q ss_pred             cccCeEcCcCccceEEecCCEEEEcccCCCCCeeeEEEeE-eCCCcccceeEE
Q psy7035           2 SFSNVQLYNNISAGVIVSNQSLVLQNVSRARAGHYTCVGS-NGEGDGQSNAQK   53 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~~~~~tL~i~~v~~~D~G~Y~C~a~-N~~G~~~s~~~~   53 (70)
                      +|||+++..+.. .+...+++|.|.+++.+|+|.|+|.|. |..|...+....
T Consensus       144 ~k~~~~l~~~~~-~~~~~~~~L~i~~v~~~d~G~Y~C~a~~n~~g~~~~~~~~  195 (315)
T 1itb_B          144 YKDCKPLLLDNI-HFSGVKDRLIVMNVAEKHRGNYTCHASYTYLGKQYPITRV  195 (315)
T ss_dssp             EETTEECCCCSS-SEEEETTEEEESSCCGGGCEEEEEEEEEEETTEEEEEEEE
T ss_pred             EECCEECCCccc-eEeecCceEEEEeceehhCcEEEEEEEcCCCCcEEEEEEE
Confidence            578888865433 345678899999999999999999999 788877543333

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*

Probab=98.85  E-value=2.1e-09  Score=68.33  Aligned_cols=59  Identities=20%  Similarity=0.223  Sum_probs=40.5

Q ss_pred             cccCeEcCcCccc----eEEecCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeCCC
Q psy7035           2 SFSNVQLYNNISA----GVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGLG   61 (70)
Q Consensus         2 ~~ng~~l~~~~~~----~~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~p~   61 (70)
                      ++||.++......    .....+++|.|.+++.+|+|.|+|.|+|..|...+ ++.|.+...++
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~-s~~L~~~~~~~  284 (289)
T 3ejj_X          222 KRGDTKLEIPLNSDFQDNYYKKVRALSLNAVDFQDAGIYSCVASNDVGTRTA-TMNFQVVESHH  284 (289)
T ss_dssp             EETTEECCCCEEEEECSSSEEEEEEEEESSCCSSSCEEEEEEEECSSCEEEE-EEEEECC----
T ss_pred             EECCEEeeccCCcccccceEEeeEEEEEEeecccCCEEEEEEEEcCCCCccc-cEEEEEEeccc
Confidence            4667766543211    11123578999999999999999999999998655 67888764443

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}

Probab=98.85  E-value=3.8e-09  Score=64.46  Aligned_cols=54  Identities=13%  Similarity=0.083  Sum_probs=41.0

Q ss_pred             cccCeEcCcCccceEEecCC--EEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEE
Q psy7035           2 SFSNVQLYNNISAGVIVSNQ--SLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAY   56 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~~~~~--tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V   56 (70)
                      +|||+++..+.+..+...++  +|.|.+++.+|+|.|+|.|.|..|... ..+.|.|
T Consensus        38 ~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~n~~~~~~-~~~~l~v   93 (212)
T 2r15_A           38 SHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQ-KTVDLSG   93 (212)
T ss_dssp             EETTEECCCCSSEEEEEETTEEEEEEESCCGGGCEEEEEEEECSSCEEE-EEEEECH
T ss_pred             EECCEEccCCCeEEEEEeCCEEEEEECCCCcccCEEEEEEEecCCcceE-EEEEEEE
Confidence            57888887765555544444  499999999999999999999888654 3555544

>3o3u_N Maltose-binding periplasmic protein, advanced Gly END product-specific receptor; RAGE, AGER, scavenger receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3s59_A 3s58_A 3cjj_A 2l7u_A* 2e5e_A

Probab=98.85  E-value=3.5e-09  Score=73.95  Aligned_cols=49  Identities=20%  Similarity=0.266  Sum_probs=41.8

Q ss_pred             ceEEecCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeCCCC
Q psy7035          14 AGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGLGI   62 (70)
Q Consensus        14 ~~~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~p~~   62 (70)
                      +..+..+++|.|.+++.+|+|.|+|.+.|..|...+..+.|.|...|..
T Consensus       425 r~~~~~~~~L~i~~v~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~  473 (581)
T 3o3u_N          425 VARVLPNGSLFLPAVGIQDEGIFRCQAMNRNGKETKSNYRVRVYQIPGK  473 (581)
T ss_dssp             TSEECTTSCEEESSCCGGGCEEEEEEEECTTSCEEEEEEEEEEEBCCCC
T ss_pred             cEEEcCCceEEEeccccccCeEEEEEEEcCCCceeEEEEEEEEEcCCCC
Confidence            3445677899999999999999999999999987677899999976654

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*

Probab=98.85  E-value=5.3e-09  Score=64.27  Aligned_cols=58  Identities=21%  Similarity=0.228  Sum_probs=44.7

Q ss_pred             cccCeEcCcCc--cceEEecCCEE----EEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeC
Q psy7035           2 SFSNVQLYNNI--SAGVIVSNQSL----VLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIG   59 (70)
Q Consensus         2 ~~ng~~l~~~~--~~~~~~~~~tL----~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~   59 (70)
                      ++||.++....  ...+...++++    +|.+++.+|+|.|+|.|.|..|...+..+.|.|.+.
T Consensus        44 ~~~g~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~~~n~~g~~~~~~~~l~v~~~  107 (217)
T 2vr9_A           44 FKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVL  107 (217)
T ss_dssp             EETTEECCCSSSSSSEEECTTSCEEESSCCBSSSCBCCEEEEEEEEETTEEEECCCEEEEECEE
T ss_pred             EECCcCccCCCccceeEEecCCceEEEEEeccCCcccCceEEEEEecCCCccccccceEEEEEe
Confidence            56788876532  23444566665    688999999999999999999988777888888763

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G

Probab=98.85  E-value=2.8e-09  Score=64.59  Aligned_cols=50  Identities=20%  Similarity=0.273  Sum_probs=40.1

Q ss_pred             EecCCEEEEcccCCCCCeeeEEEeEeCCCc-ccceeEEEEEEeCCCCCCCC
Q psy7035          17 IVSNQSLVLQNVSRARAGHYTCVGSNGEGD-GQSNAQKTAYDIGLGIPAEP   66 (70)
Q Consensus        17 ~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~-~~s~~~~L~V~~~p~~~~~p   66 (70)
                      ...+++|+|.+++.+|+|.|+|.|.|..|. ..+..+.|.|.+.|..+..+
T Consensus        64 ~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~~l~V~~~p~~~~~~  114 (209)
T 1nbq_A           64 TFLPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVLVPPSKPTVN  114 (209)
T ss_dssp             EEETTEEECSCCCTTSCSEEEEEEEETTSSCEECCEEECCEEBCCCCCCCC
T ss_pred             EeeccEEEEeeCCHHHCcEEEEEEecCCCCccceEEEEEEEecCCcCCCcc
Confidence            344589999999999999999999998763 34567899999888765443

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...

Probab=98.85  E-value=5.2e-09  Score=63.27  Aligned_cols=40  Identities=13%  Similarity=0.169  Sum_probs=34.6

Q ss_pred             EecCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEE
Q psy7035          17 IVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYD   57 (70)
Q Consensus        17 ~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~   57 (70)
                      ...+++|.|.+++++|+|.|+|.|.|..|.. +..+.|.|.
T Consensus       139 ~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~-~~~~~l~V~  178 (184)
T 2ny1_B          139 IQGGKTLSVSQLELQDSGTWTCTVLQNQKKV-EFKIDIVVL  178 (184)
T ss_dssp             EEESSEEEESSCCGGGCEEEEEEEEETTEEE-EEEEEEEEE
T ss_pred             ccCceEEEEecCCcCCCeEEEEEEEECCceE-EEEEEEEEE
Confidence            3467899999999999999999999987765 557899998

>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=98.85  E-value=5.8e-09  Score=59.70  Aligned_cols=50  Identities=14%  Similarity=0.068  Sum_probs=36.8

Q ss_pred             cccCeEcCcC-ccceEEecCC---EEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEE
Q psy7035           2 SFSNVQLYNN-ISAGVIVSNQ---SLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYD   57 (70)
Q Consensus         2 ~~ng~~l~~~-~~~~~~~~~~---tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~   57 (70)
                      +|||+++..+ .+..+. .++   +|+|.+++.+|+|.|+|.|.|.     +..+.|.|.
T Consensus        50 ~k~g~~l~~~~~~~~~~-~~~~~~~L~I~~v~~~D~G~Y~C~a~~~-----~~~~~l~V~  103 (104)
T 1pd6_A           50 LKNGQEIQMSGSKYIFE-SIGAKRTLTISQCSLADDAAYQCVVGGE-----KCSTELFVK  103 (104)
T ss_dssp             EESSSEECCCSSSSEEE-EETTEEEEEECSCSSSSCEEEEEEETTE-----EECCEEEEE
T ss_pred             EECCEECCCCCCeEEEE-ecCCEEEEEECCCCcccCEEEEEEECCC-----cEEEEEEEe
Confidence            5789888765 444333 344   8999999999999999999552     335667765

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}

Probab=98.85  E-value=1.3e-08  Score=61.69  Aligned_cols=35  Identities=23%  Similarity=0.383  Sum_probs=30.8

Q ss_pred             EEEEcccC-CCCCeeeEEEeEeCCCcccceeEEEEEE
Q psy7035          22 SLVLQNVS-RARAGHYTCVGSNGEGDGQSNAQKTAYD   57 (70)
Q Consensus        22 tL~i~~v~-~~D~G~Y~C~a~N~~G~~~s~~~~L~V~   57 (70)
                      +|.|.+++ ++|+|.|+|.|+|..|.. +..+.|.|.
T Consensus       154 ~L~i~~~~~~~d~G~Y~C~a~N~~g~~-~~~~~l~V~  189 (190)
T 2wv3_A          154 ELNIVNLQITEDPGEYECNATNSIGSA-SVSTVLRVR  189 (190)
T ss_dssp             EEEECSCCTTTSCEEEEEEEECSSCEE-EEEEEEEEE
T ss_pred             EEEEEeccccCCCEEEEEEEEecCCcc-eeEEEEEEE
Confidence            79999999 899999999999999985 446778775

>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=98.84  E-value=1.3e-09  Score=70.45  Aligned_cols=43  Identities=23%  Similarity=0.261  Sum_probs=35.1

Q ss_pred             cCCEEEEcccCCCCCeeeEEEeEeCC--CcccceeEEEEEEeCCC
Q psy7035          19 SNQSLVLQNVSRARAGHYTCVGSNGE--GDGQSNAQKTAYDIGLG   61 (70)
Q Consensus        19 ~~~tL~i~~v~~~D~G~Y~C~a~N~~--G~~~s~~~~L~V~~~p~   61 (70)
                      .+++|.|.+|+++|+|.|+|.|.|..  ....|+++.|.|...+.
T Consensus       150 ~~~~l~I~~v~~~d~G~Y~C~a~n~~~~~s~~S~~~~l~V~~~~~  194 (242)
T 1p6f_A          150 VQAEFPLGPVTTAHRGTYRCFGSYNNHAWSFPSEPVKLLVTGDIE  194 (242)
T ss_dssp             SEEEEEEEECCGGGCEEEEEEEEEETTEECCCCCCEEEEEEC---
T ss_pred             ceEEEEeCCCccccCEEEEEEEECCCCcccCCCCCEEEEEeccCC
Confidence            45789999999999999999999964  45678899999996443

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}

Probab=98.84  E-value=1e-08  Score=65.73  Aligned_cols=61  Identities=30%  Similarity=0.215  Sum_probs=46.4

Q ss_pred             cccCeEcCcCccceEEe--cCCEEEEcc-cCCCCCeeeEEEeEeCCCcccceeEEEEEEeCCCCC
Q psy7035           2 SFSNVQLYNNISAGVIV--SNQSLVLQN-VSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGLGIP   63 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~~--~~~tL~i~~-v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~p~~~   63 (70)
                      ++||.++..+.+..+..  ..++|.|.+ ++++|+|.|+|.|.|..|.. +..+.|.|...|..|
T Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~N~~G~~-~~~~~l~v~~~P~~p  202 (305)
T 2nzi_A          139 QKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGID-QKTVELDVADVPDPP  202 (305)
T ss_dssp             EESSSBCCSSSSCEEEECSSEEEEEETTCCCSTTCEEEEEEEEETTEEE-EEEEEEEEEBCCCCC
T ss_pred             EECCEECCCCCcEEEEEcCCceEEEEecCCccCccEEEEEEEEeCCCce-eeEEEEEEecCCCCC
Confidence            46777776554444433  346899999 99999999999999999985 447899999666544

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=98.84  E-value=7.7e-09  Score=69.64  Aligned_cols=40  Identities=18%  Similarity=0.161  Sum_probs=35.1

Q ss_pred             cCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeC
Q psy7035          19 SNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIG   59 (70)
Q Consensus        19 ~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~   59 (70)
                      .+++|+|.+|+++|+|.|+|.|+|..|.. +..+.|.|...
T Consensus       299 ~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~-~~~~~l~V~~~  338 (361)
T 2xot_A          299 RNGDLFFKKVQVEDGGVYTCYAMGETFNE-TLSVELKVYNF  338 (361)
T ss_dssp             ETTEEEESSCCTTSCEEEEEEEECSSCEE-EEEEEEEEESS
T ss_pred             ecCeEEEeecCcccCEEEEEEEecCCCcc-EEEEEEEEEee
Confidence            88999999999999999999999998875 44688888743

>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens}

Probab=98.83  E-value=3.2e-09  Score=61.86  Aligned_cols=40  Identities=18%  Similarity=0.258  Sum_probs=33.6

Q ss_pred             CCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeCCC
Q psy7035          20 NQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGLG   61 (70)
Q Consensus        20 ~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~p~   61 (70)
                      +.+|+|.+++.+|+|.|+|.|.|. |. .+..+.|.|...|.
T Consensus        65 ~~~L~I~~v~~~DsG~Y~C~a~n~-g~-~~~~~~l~V~~~P~  104 (124)
T 3rbg_A           65 QLSITVPNVTLQDEGVYKCLHYSD-SV-STKEVKVIVLATMK  104 (124)
T ss_dssp             EEEEEESSCCGGGCEEEEEEEESS-SE-EEEEEEEEEECC--
T ss_pred             EEEEEECCCChHHCEEEEEEEEcC-CC-CcEEEEEEEEeCCC
Confidence            469999999999999999999999 65 46678999997764

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*

Probab=98.83  E-value=3.8e-09  Score=65.69  Aligned_cols=41  Identities=24%  Similarity=0.306  Sum_probs=34.2

Q ss_pred             CCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeCCC
Q psy7035          20 NQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGLG   61 (70)
Q Consensus        20 ~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~p~   61 (70)
                      .++|+|.+++.+|+|.|+|.|+|..|.. +..+.|.|...|.
T Consensus       170 ~~~L~I~~v~~~D~G~Y~C~a~N~~g~~-~~~~~l~V~~~p~  210 (213)
T 2x1w_L          170 LSTLTIDGVTRSDQGLYTCAASSGLMTK-KNSTFVRVHEDPI  210 (213)
T ss_dssp             EEEEEESSCCGGGCEEEEEEEECSSCEE-EEEEEEEEEC---
T ss_pred             eEEEEECCCCcccCEEEEEEEecCCCcE-EEEEEEEEecccc
Confidence            3479999999999999999999999986 6689999985543

>3udw_C Poliovirus receptor; PVR tigit IGSF signal transduction immunology, IGSF, cell SU receptor signalling, glycosylation, membrane protein; HET: NAG; 2.90A {Homo sapiens}

Probab=98.83  E-value=3.9e-09  Score=59.59  Aligned_cols=40  Identities=23%  Similarity=0.211  Sum_probs=32.7

Q ss_pred             CCEEEEcccCCCCCeeeEEEeEe-CCCcccceeEEEEEEeCC
Q psy7035          20 NQSLVLQNVSRARAGHYTCVGSN-GEGDGQSNAQKTAYDIGL   60 (70)
Q Consensus        20 ~~tL~i~~v~~~D~G~Y~C~a~N-~~G~~~s~~~~L~V~~~p   60 (70)
                      +.+|+|.+++.+|+|.|.|.+.| ..| ..+..+.|.|...|
T Consensus        78 ~~sL~I~~v~~~D~G~Y~C~v~~~~~~-~~~~~~~L~V~~~P  118 (118)
T 3udw_C           78 NASLRMFGLRVEDEGNYTCLFVTFPQG-SRSVDIWLRVLAKP  118 (118)
T ss_dssp             BCCEEECSCCGGGCEEEEEEEEEETTE-EEEEEEEEEEEC--
T ss_pred             CcEEEEeecChHHCeEEEEEEEECCCC-CccceEEEEEEeCC
Confidence            56899999999999999999999 555 45667899998544

>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B

Probab=98.83  E-value=5.9e-09  Score=63.72  Aligned_cols=39  Identities=13%  Similarity=0.178  Sum_probs=34.3

Q ss_pred             CEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeCC
Q psy7035          21 QSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGL   60 (70)
Q Consensus        21 ~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~p   60 (70)
                      .+|.|.+++.+|+|.|+|.|.|..|.. +..+.|.|...|
T Consensus        67 ~~L~I~~v~~~D~G~Y~C~~~~~~~~~-~~~~~l~V~~~~  105 (202)
T 3bp6_B           67 ALFHIPSVQVRDSGQYRCLVICGAAWD-YKYLTVKVKASY  105 (202)
T ss_dssp             EEEEECSCCGGGCEEEEEEEEETTEEE-EEEEEEEEEBCC
T ss_pred             eEEEECCCCHHHCcEEEEEEEeCCCcc-eEEEEEEecCCC
Confidence            689999999999999999999998865 668899998554

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=98.82  E-value=6.1e-09  Score=67.65  Aligned_cols=37  Identities=30%  Similarity=0.364  Sum_probs=33.2

Q ss_pred             EEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeC
Q psy7035          22 SLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIG   59 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~   59 (70)
                      +|.|.+++.+|+|.|+|.|.|..|...+ .+.|.|...
T Consensus       292 ~L~i~~v~~~d~G~Y~C~a~N~~G~~~~-~~~l~V~~~  328 (334)
T 1ry7_B          292 VLSLHNVTFEDAGEYTCLAGNSIGFSHH-SAWLVVLPA  328 (334)
T ss_dssp             CEEECSCCTTSCSEEEEEEEESSCCEEE-EEEEEEECS
T ss_pred             EEEEccCCHHHCEEEEEEEeCCCCeEEE-EEEEEEEEC
Confidence            8999999999999999999999998654 789999843

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}

Probab=98.82  E-value=9.1e-09  Score=64.04  Aligned_cols=41  Identities=20%  Similarity=0.088  Sum_probs=37.1

Q ss_pred             CCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeCC
Q psy7035          20 NQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGL   60 (70)
Q Consensus        20 ~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~p   60 (70)
                      +++|.|.+++.+|+|.|+|.|.|..|...+..+.|.|.+.|
T Consensus        64 ~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~V~~~~  104 (218)
T 3k0w_A           64 TSELIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIP  104 (218)
T ss_dssp             SSEEEETTCCGGGCEEEEEEEECTTCCEECCCEEEEEECCC
T ss_pred             CCEEEEccCChhhCeEeEEEEEcCCCCceeeEEEEEEEccC
Confidence            56899999999999999999999999877888999998764

>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.82  E-value=2.8e-09  Score=63.70  Aligned_cols=38  Identities=13%  Similarity=0.054  Sum_probs=34.1

Q ss_pred             CCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEe
Q psy7035          20 NQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDI   58 (70)
Q Consensus        20 ~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~   58 (70)
                      +.+|+|.+|+++|+|.|+|+|+|..|. .+-.+.|+|..
T Consensus        79 ~~~L~I~~v~~~D~G~Y~Cevsn~~g~-~s~~~~L~V~~  116 (118)
T 2edn_A           79 TVELHIGKVVLGDRGYYRLEVKAKDTC-DSCGFNIDVEA  116 (118)
T ss_dssp             EEEEEESSCCTTTCSCEEEEEECSSCE-EEEEECCEEEC
T ss_pred             eEEEEEeeCChhhCEEEEEEEEEcCCc-EEEEEEEEEEc
Confidence            478999999999999999999999996 56688999974

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}

Probab=98.81  E-value=1.1e-08  Score=63.62  Aligned_cols=57  Identities=19%  Similarity=0.151  Sum_probs=44.0

Q ss_pred             cccCeEcCcCcc---ceEEecCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeC
Q psy7035           2 SFSNVQLYNNIS---AGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIG   59 (70)
Q Consensus         2 ~~ng~~l~~~~~---~~~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~   59 (70)
                      ++||+++....+   ......+.+|.|.+++.+|+|.|+|.|.|..|.. +..+.|.|.+.
T Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~-~~~~~l~V~~~  109 (241)
T 3grw_A           50 LKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSI-RQTYTLDVLER  109 (241)
T ss_dssp             EETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEEE-EEEEEEEEECC
T ss_pred             EECCcccCCCCcccceeeeccceEEEEEeCCcccCEEEEEEEeecCCce-EEEEEEEEecc
Confidence            577888764332   2344566799999999999999999999998875 44688888864

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*

Probab=98.81  E-value=6.5e-09  Score=64.62  Aligned_cols=53  Identities=11%  Similarity=-0.017  Sum_probs=37.1

Q ss_pred             cCeEcCcCccceEEecCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEE
Q psy7035           4 SNVQLYNNISAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYD   57 (70)
Q Consensus         4 ng~~l~~~~~~~~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~   57 (70)
                      ||+.+... .......+++|+|.+++++|+|.|+|.|.|..+...+..+.|.|.
T Consensus        48 ~g~~~~~~-~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~n~~~~~~s~~~~l~v~  100 (213)
T 2x1w_L           48 EKRFVPDG-NRISWDSKKGFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVV  100 (213)
T ss_dssp             TEEECCCS-SSCEEETTTEEEEEGGGTTTCSEEEEEEC----CEECCCEEEEEC
T ss_pred             CCccccCC-CcccccCCccEEEccCChhcCceEEEEEEECCeeEEEEEEEEEEe
Confidence            46666544 333334678999999999999999999999766666666788874

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}

Probab=98.81  E-value=4.5e-09  Score=66.86  Aligned_cols=41  Identities=32%  Similarity=0.383  Sum_probs=32.4

Q ss_pred             CCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeCCC
Q psy7035          20 NQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGLG   61 (70)
Q Consensus        20 ~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~p~   61 (70)
                      +++|+|.+++.+|+|.|+|.|.|..|.. +..+.|.|.+...
T Consensus       244 ~~~L~i~~v~~~d~G~Y~C~a~N~~g~~-~~~~~l~V~~~~~  284 (292)
T 4dkd_C          244 VLTLNLDQVDFQHAGNYSCVASNVQGKH-STSMFFRVVESAG  284 (292)
T ss_dssp             EEEEEESSCCTTSCEEEEEEEECSSCEE-EEEEEECC-----
T ss_pred             EEEEEECccChhcCeEEEEEEecCCCCc-eeEEEEEEeeCCC
Confidence            3589999999999999999999999984 5678999986654

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A

Probab=98.81  E-value=4.3e-09  Score=65.67  Aligned_cols=42  Identities=12%  Similarity=0.076  Sum_probs=36.6

Q ss_pred             CCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeCCCC
Q psy7035          20 NQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGLGI   62 (70)
Q Consensus        20 ~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~p~~   62 (70)
                      +++|.|.+++++|+|.|+|.|.|..|. .+..+.|.|.+.|..
T Consensus        53 ~~~L~I~~v~~~D~G~Y~C~a~n~~~~-~~~~~~l~V~~~p~~   94 (202)
T 1vca_A           53 TSTLTMNPVSFGNEHSYLCTATCESRK-LEKGIQVEIYSFPKD   94 (202)
T ss_dssp             EEEEEESSCCGGGCSEEEEEEEETTEE-EEEEEEEEEEBCCSC
T ss_pred             ccEEEECcCCHHHCEEEEEEEEECCce-EeeEEEEEEEeCCCC
Confidence            458999999999999999999999876 466899999987754

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D

Probab=98.81  E-value=6.4e-09  Score=67.65  Aligned_cols=58  Identities=21%  Similarity=0.174  Sum_probs=40.9

Q ss_pred             cccCeEcCcCccceEE---ecCCEEEEcccCCCCCeeeEEEeEeCCCcc----cceeEEEEEEeC
Q psy7035           2 SFSNVQLYNNISAGVI---VSNQSLVLQNVSRARAGHYTCVGSNGEGDG----QSNAQKTAYDIG   59 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~---~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~----~s~~~~L~V~~~   59 (70)
                      |++|..+.........   ..+++|.|.+++++|+|.|+|.|.|..|..    .+..+.|.|...
T Consensus       152 ~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~s~~~~l~V~~~  216 (316)
T 3vh8_G          152 HKEGISKDPSRLVGQIHDGVSKANFSIGPMMLALAGTYRCYGSVTHTPYQLSAPSDPLDIVVTGP  216 (316)
T ss_dssp             EETTCCSCCEEEECEEETTEEEEEEEECSCCGGGCEEEEEEEECTTCTTBCCCCCCCEEEEEECS
T ss_pred             EECCCccccceeeeeecCCCceEEEEECCCChhhCceEEEEEecCCCCccccCCCCCEEEEecCC
Confidence            4666665432211111   245689999999999999999999998853    367788888743

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}

Probab=98.81  E-value=8.1e-09  Score=67.34  Aligned_cols=59  Identities=10%  Similarity=0.037  Sum_probs=45.0

Q ss_pred             cccCeEc--CcCccceEEecCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeCCC
Q psy7035           2 SFSNVQL--YNNISAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGLG   61 (70)
Q Consensus         2 ~~ng~~l--~~~~~~~~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~p~   61 (70)
                      ++||.++  ....+..+...+++|.|.+++.+|+|.|+|.|.|..|.. +..+.|.|...|.
T Consensus        60 ~k~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~n~~g~~-~~~~~l~V~~~~~  120 (339)
T 3o4o_C           60 HKNDSARTVPGEEETRMWAQDGALWLLPALQEDSGTYVCTTRNASYCD-KMSIELRVFENTD  120 (339)
T ss_dssp             EESSCCSCCSCCSSSCEEEETTEEEESSBCTTCCEEEECCEEETTEEE-EEEEEEEEECSCG
T ss_pred             EECCCCcccCccccccEEeeCCeEEECCCCcccCEEEEEEEECCcceE-EEEEEEEEEcCCC
Confidence            4667663  333234455788999999999999999999999998854 5578899986543

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C*

Probab=98.80  E-value=2.3e-09  Score=67.83  Aligned_cols=55  Identities=16%  Similarity=0.031  Sum_probs=41.1

Q ss_pred             cccCeEcCcCccceEEecCCEEEEcccCCCCCeeeEEEeEeCC----CcccceeEEEEEEe
Q psy7035           2 SFSNVQLYNNISAGVIVSNQSLVLQNVSRARAGHYTCVGSNGE----GDGQSNAQKTAYDI   58 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~----G~~~s~~~~L~V~~   58 (70)
                      +|||..+...  ......+++|.|.+|+++|+|.|+|.|.|..    ....|+++.|.|..
T Consensus       140 ~k~g~~~~~~--~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~s~~S~~~~l~V~g  198 (218)
T 1uct_A          140 AKEGELSLPQ--HQSGEHPANFSLGPVDLNVSGIYRCYGWYNRSPYLWSFPSNALELVVTD  198 (218)
T ss_dssp             EETTCSSCCS--EEECSSSEEEECCSCCGGGCEEEEEEEECTTSTTEECCCCCCEEEEEC-
T ss_pred             EECCCccccc--ccCCCccCEEEEccCCcccCEEEEEEEEcCCCCCcCCCCCCcEEEEEec
Confidence            4677766532  1222357899999999999999999999863    34678899999973

>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens}

Probab=98.80  E-value=1.4e-09  Score=66.51  Aligned_cols=53  Identities=13%  Similarity=0.084  Sum_probs=39.0

Q ss_pred             cccCeEcCcCccceEEecCCEEEEcccCCCCCeeeEEEeEeCCC----cccceeEEEEE
Q psy7035           2 SFSNVQLYNNISAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEG----DGQSNAQKTAY   56 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G----~~~s~~~~L~V   56 (70)
                      +|||..+....  .....+++|.|.+++.+|+|.|+|.|.|..+    +..|+++.|.|
T Consensus       127 ~k~g~~~~~~~--~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~~~~~~s~~S~~~~l~V  183 (184)
T 2gi7_A          127 YKEGDPAPYKN--PERWYRASFPIITVTAAHSGTYRCYSFSSRDPYLWSAPSDPLELVV  183 (184)
T ss_dssp             EECCCCTTSCC--CCEEEEESSSEEEETTCCSEEEEEEEECTTSTTBCCCCCCCEEEEC
T ss_pred             EECCCcCccee--cCCCceEEEEEccCCccCCeEEEEEEEeCCCCcccCCCCCcEEEEe
Confidence            46777665422  1223567899999999999999999999754    34577887776

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*

Probab=98.80  E-value=3.6e-09  Score=66.11  Aligned_cols=38  Identities=18%  Similarity=0.288  Sum_probs=32.8

Q ss_pred             CEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeCCC
Q psy7035          21 QSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGLG   61 (70)
Q Consensus        21 ~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~p~   61 (70)
                      ++|.|.+++.+|+|.|+|.|.|.   ..+..+.|.|.+.|.
T Consensus        54 ~~L~i~~v~~~D~G~Y~C~a~n~---~~s~~~~l~V~~~p~   91 (204)
T 3sgj_C           54 SSYFIDAATVDDSGEYRCQTQLS---TLSDPVQLEVHIGWL   91 (204)
T ss_dssp             SEEEESSCCGGGCEEEEEEETTS---BCCCCEEEEEECSSE
T ss_pred             cEEEEecccccCCEEEEEEeCCC---cccccEEEEEecCce
Confidence            79999999999999999999984   346678999987764

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=98.80  E-value=1.3e-08  Score=61.26  Aligned_cols=35  Identities=26%  Similarity=0.538  Sum_probs=31.7

Q ss_pred             EEEEcccC-CCCCeeeEEEeEeCCCcccceeEEEEEE
Q psy7035          22 SLVLQNVS-RARAGHYTCVGSNGEGDGQSNAQKTAYD   57 (70)
Q Consensus        22 tL~i~~v~-~~D~G~Y~C~a~N~~G~~~s~~~~L~V~   57 (70)
                      +|.|.+++ .+|+|.|+|.|.|..|...+ .+.|.|.
T Consensus       147 ~L~i~~v~~~~d~G~Y~C~a~N~~g~~~~-~~~l~V~  182 (184)
T 3b5h_A          147 ELHIENLNMEADPGQYRCNGTSSKGSDQA-IITLRVR  182 (184)
T ss_dssp             EEEECSCCTTTSSEEEEEEEEETTEEEEE-EEEEEEC
T ss_pred             EEEEeeccccccCceEEEEEEeCCCcceE-EEEEEEe
Confidence            89999999 99999999999999998655 5888886

>4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A*

Probab=98.79  E-value=1.1e-09  Score=66.44  Aligned_cols=38  Identities=16%  Similarity=0.021  Sum_probs=32.5

Q ss_pred             EEEEcccCCCCCeeeEEEeEeCCCcc-cceeEEEEEEeC
Q psy7035          22 SLVLQNVSRARAGHYTCVGSNGEGDG-QSNAQKTAYDIG   59 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N~~G~~-~s~~~~L~V~~~   59 (70)
                      +|.|.+++++|+|.|+|.|+|..|.. .+.+++|+|+|-
T Consensus       182 ~L~i~~~~~~d~g~YtC~a~N~~~~~~~~~~v~l~V~Y~  220 (225)
T 4fmk_A          182 RYSLVPVGRADGVKVTCRVEHESFEEPILLPVTLSVRYH  220 (225)
T ss_dssp             EEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECCBTTC
T ss_pred             EEEEeeCCHHHCCEEEEEEEcCCCCeEEEEEEEEEEEEC
Confidence            69999999999999999999998754 456788888764

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster}

Probab=98.78  E-value=1.2e-08  Score=73.60  Aligned_cols=61  Identities=16%  Similarity=0.086  Sum_probs=50.2

Q ss_pred             cc-cCeEcCcCccceEEecCCEEEEcccCCCC------CeeeEEEeEeCCCcccceeEEEEEEeCCCC
Q psy7035           2 SF-SNVQLYNNISAGVIVSNQSLVLQNVSRAR------AGHYTCVGSNGEGDGQSNAQKTAYDIGLGI   62 (70)
Q Consensus         2 ~~-ng~~l~~~~~~~~~~~~~tL~i~~v~~~D------~G~Y~C~a~N~~G~~~s~~~~L~V~~~p~~   62 (70)
                      +| ||.++....+......+|+|.|.+++.+|      +|.|+|.|+|..|...|..+.|.+...+..
T Consensus        74 ~k~~g~~~~~~~~~~~~~~~g~l~i~~~~~~~~~~~~d~G~Y~C~a~n~~G~~~S~~~~v~~~~~~~~  141 (816)
T 3dmk_A           74 IRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYY  141 (816)
T ss_dssp             EETTSCBCCCBTTTBEECSTTEEEECCCCGGGCCHHHHEEEEEEEEEETTEEEEEEEEEEEEECCCCC
T ss_pred             EeCCCCCccCCCceEEEeeCCcEEEcCCChHHccccccceEEEEEEecCcceEEccceEEEEEEcccc
Confidence            35 78888765555666889999999998887      999999999999998898998888765543

>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A

Probab=98.78  E-value=2.8e-09  Score=65.77  Aligned_cols=41  Identities=20%  Similarity=0.245  Sum_probs=33.4

Q ss_pred             cCCEEEEcccCCCCCeeeEEEeEeCC----CcccceeEEEEEEeC
Q psy7035          19 SNQSLVLQNVSRARAGHYTCVGSNGE----GDGQSNAQKTAYDIG   59 (70)
Q Consensus        19 ~~~tL~i~~v~~~D~G~Y~C~a~N~~----G~~~s~~~~L~V~~~   59 (70)
                      .+++|.|.+++++|+|.|+|.|.|..    +...|.++.|.|...
T Consensus        61 ~~~~l~I~~v~~~D~G~Y~C~a~~~~~~~~~~~~s~~~~l~V~~~  105 (201)
T 1nkr_A           61 SKANFSISRMTQDLAGTYRCYGSVTHSPYQVSAPSDPLDIVIIGL  105 (201)
T ss_dssp             EEEEEEESSCCGGGCEEEEEEEEBTTBTTCCCCCCCCEEEEEECS
T ss_pred             ceEEEEeccCCcccCeEEEEeEecCCCCccccCCCCCEEEEeecc
Confidence            45789999999999999999999853    244577889999854

>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A

Probab=98.77  E-value=8.1e-09  Score=60.71  Aligned_cols=30  Identities=17%  Similarity=0.457  Sum_probs=27.3

Q ss_pred             cCCEEEEcccCCCCCeeeEEEeEeCCCccc
Q psy7035          19 SNQSLVLQNVSRARAGHYTCVGSNGEGDGQ   48 (70)
Q Consensus        19 ~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~   48 (70)
                      .+++|.|.+++.+|+|.|+|.|.|..|...
T Consensus        88 ~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~  117 (137)
T 3qr2_A           88 AASTISIDTLVEEDTGTYECRASNDPDRNH  117 (137)
T ss_dssp             EEEEEEECSCCGGGCEEEEEEEECCTTSSS
T ss_pred             cceEEEECCCCcccCEEEEEEEEecCCccc
Confidence            356999999999999999999999999864

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A*

Probab=98.77  E-value=1.9e-08  Score=61.38  Aligned_cols=41  Identities=22%  Similarity=0.278  Sum_probs=34.2

Q ss_pred             cCCEEEEcccCCCCCeeeEEEeEeCCCccc----ceeEEEEEEeC
Q psy7035          19 SNQSLVLQNVSRARAGHYTCVGSNGEGDGQ----SNAQKTAYDIG   59 (70)
Q Consensus        19 ~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~----s~~~~L~V~~~   59 (70)
                      .+.+|.|.+++.+|+|.|+|.|.|..|...    +..+.|.|...
T Consensus        63 ~~~~L~I~~v~~~D~G~Y~C~~~~~~g~~~~~~~~~~~~l~V~~~  107 (201)
T 1dr9_A           63 NNLSIVILALRPSDEGTYECVVLKYEKDAFKREHLAEVTLSVKAD  107 (201)
T ss_dssp             TTTEEEECSCCGGGCEEEEEEEEECCTTSCEEEEEEEEEEEEECC
T ss_pred             CCcEEEEecccchhCeEEEEEEEcCCCCccccccccEEEEEEcCC
Confidence            457999999999999999999999887654    34678888754

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*

Probab=98.77  E-value=1e-08  Score=67.63  Aligned_cols=46  Identities=15%  Similarity=0.280  Sum_probs=36.2

Q ss_pred             cccCeEcCcCccceEEecCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEE
Q psy7035           2 SFSNVQLYNNISAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAY   56 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V   56 (70)
                      +|||+++..        ++++|+|.+++.+|+|.|+|.|.|..|.... .+.|.|
T Consensus       342 ~~~g~~i~~--------~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~-~~~l~V  387 (388)
T 2v5m_A          342 MKDGKAIGH--------SESVLRIESVKKEDKGMYQCFVRNDRESAEA-SAELKL  387 (388)
T ss_dssp             EETTEECSC--------CSSEEEESSCCGGGCEEEEEEEECSSCEEEE-EEEEEE
T ss_pred             EECCEECcc--------CCCEEEEecCChhhCEEEEEEEEcCCCcEEE-EEEEEe
Confidence            356665543        3579999999999999999999999997644 566765

>1neu_A Myelin P0 protein; structural protein, glycoprotein, transmembrane, phosphorylation, immunoglobulin fold, signal; 1.90A {Rattus norvegicus} SCOP: b.1.1.1

Probab=98.77  E-value=8.1e-09  Score=59.22  Aligned_cols=40  Identities=20%  Similarity=0.266  Sum_probs=30.5

Q ss_pred             CCEEEEcccCCCCCeeeEEEeEeCCCc-ccceeEEEEEEeC
Q psy7035          20 NQSLVLQNVSRARAGHYTCVGSNGEGD-GQSNAQKTAYDIG   59 (70)
Q Consensus        20 ~~tL~i~~v~~~D~G~Y~C~a~N~~G~-~~s~~~~L~V~~~   59 (70)
                      +.+|+|.+++.+|+|.|.|.+.|..+. ..+..+.|.|...
T Consensus        80 ~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~~~v~L~V~~~  120 (124)
T 1neu_A           80 DGSIVIHNLDYSDNGTFTCDVKNPPDIVGKTSQVTLYVFEK  120 (124)
T ss_dssp             BCCEEECSCCGGGCEEEEEEEEC----CCEEEEEEEEEEC-
T ss_pred             eEEEEEccCChhhCEEEEEEEEcCCCCcCcEeeEEEEEecC
Confidence            468999999999999999999998775 3466789999743

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R

Probab=98.76  E-value=1.2e-08  Score=65.78  Aligned_cols=55  Identities=13%  Similarity=0.160  Sum_probs=40.5

Q ss_pred             cccCeEcCcCcc----ceEEec----------CCEEEEcccCCCC-CeeeEEEeEeCCCcccceeEEEEEE
Q psy7035           2 SFSNVQLYNNIS----AGVIVS----------NQSLVLQNVSRAR-AGHYTCVGSNGEGDGQSNAQKTAYD   57 (70)
Q Consensus         2 ~~ng~~l~~~~~----~~~~~~----------~~tL~i~~v~~~D-~G~Y~C~a~N~~G~~~s~~~~L~V~   57 (70)
                      ++||.++..+..    ......          .++|+|.+++.+| +|.|+|.|+|..|...+ .+.|.|.
T Consensus       244 ~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~~G~~~~-~~~l~v~  313 (315)
T 1itb_B          244 KWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAA-YIQLIYP  313 (315)
T ss_dssp             EETTEECCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCCGGGGTSCEEEEEECTTCCEEE-EEEEECC
T ss_pred             EECCEECCcccccccccceeeeccCCCceeEEEEEEEEeecCHHHcCCceEEEEecCCCceeE-EEEEEec
Confidence            468888865432    112222          2389999999999 99999999999998644 6777764

>2vsd_A CHIR AB1; immune system receptor, FC receptor; HET: NAG NDG MAN; 1.82A {Gallus gallus}

Probab=98.76  E-value=2.2e-09  Score=61.57  Aligned_cols=41  Identities=20%  Similarity=0.223  Sum_probs=33.5

Q ss_pred             CCEEEEcccCCCCCeeeEEEeEeCC---CcccceeEEEEEEeCC
Q psy7035          20 NQSLVLQNVSRARAGHYTCVGSNGE---GDGQSNAQKTAYDIGL   60 (70)
Q Consensus        20 ~~tL~i~~v~~~D~G~Y~C~a~N~~---G~~~s~~~~L~V~~~p   60 (70)
                      +.+|+|.+|+++|+|.|.|.+.|..   .+..|+++.|.|.+..
T Consensus        55 ~~~l~I~~v~~~dsG~Y~C~~~n~~~~~~s~~Sdpl~L~V~~~~   98 (105)
T 2vsd_A           55 AAEFSFAVTNLEDAGTYQCRYQVSEPLWTSNQSDPVELVLTIEG   98 (105)
T ss_dssp             EEEEEEECCSGGGCEEEEEEEEEETTEEECCCCCCEEECCC---
T ss_pred             EEEEEECCCCHHHCeEEEEEEEcCCCCcccCCCCCEEEEEEEec
Confidence            3579999999999999999999964   4677999999997543

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens}

Probab=98.76  E-value=8e-09  Score=63.81  Aligned_cols=42  Identities=19%  Similarity=0.116  Sum_probs=35.6

Q ss_pred             ecCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeCC
Q psy7035          18 VSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGL   60 (70)
Q Consensus        18 ~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~p   60 (70)
                      ..+++|+|.+++.+|+|.|+|.|.|..|... ..+.|.|...|
T Consensus        67 ~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~-~~~~L~V~~~~  108 (193)
T 2if7_A           67 TQSYSLQLSNLKMEDTGSYRAQISTKTSAKL-SSYTLRILRQL  108 (193)
T ss_dssp             CTTCCEEECSCCGGGCEEEEEEEECSSCEEE-EEEEEEEECCC
T ss_pred             CCCeEEEECCCCcccCceEEEEEEecCCCeE-EEEEEEEEccC
Confidence            3678999999999999999999999988754 47889997543

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A

Probab=98.75  E-value=2.7e-08  Score=65.68  Aligned_cols=59  Identities=17%  Similarity=0.076  Sum_probs=43.0

Q ss_pred             cccCeEcCcCc-cceEEec---CCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeCCC
Q psy7035           2 SFSNVQLYNNI-SAGVIVS---NQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGLG   61 (70)
Q Consensus         2 ~~ng~~l~~~~-~~~~~~~---~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~p~   61 (70)
                      ++||+++.... .+..+..   ..+|.|.+++++|+|.|+|.|.|..|...+ .+.|.|...|.
T Consensus       135 ~~~g~~l~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~-~~~l~v~~~P~  197 (389)
T 2jll_A          135 RRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATNHIGTRFQ-EYILALADVPS  197 (389)
T ss_dssp             EETTEESSCTTCTTEEEEECSSCEEEEECCCSTTSSEEEEEEEEETTEEEEE-EEEEEECCCCC
T ss_pred             EECCccCCcccCceEEEeccCCEEEEEECCCChhhCEEEEEEEEcCCCcEEE-EEEEEecCCCC
Confidence            57888886543 2222222   347999999999999999999999998644 57788764444

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A

Probab=98.75  E-value=1.6e-08  Score=72.74  Aligned_cols=54  Identities=15%  Similarity=0.143  Sum_probs=43.4

Q ss_pred             cccCeEcCcCccceEEecCC--EEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEE
Q psy7035           2 SFSNVQLYNNISAGVIVSNQ--SLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAY   56 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~~~~~--tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V   56 (70)
                      +|||++|....+..+..+++  +|.|.++.++|+|.|+|.|+|..|+.+. .+.|+|
T Consensus       517 ~k~~~el~~s~~~~i~~~~~~~~L~I~~~~~~D~G~Yt~~A~N~~G~~~~-~v~l~V  572 (573)
T 3uto_A          517 HKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSYGTKEE-IVFLNV  572 (573)
T ss_dssp             EETTEECCSSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEEEEE-EEEEEE
T ss_pred             EECCEEcccCCcEEEEEcCCEEEEEEcCCCcccCcEEEEEEEeCCCcEEE-EEEEEE
Confidence            57889998766655554443  7999999999999999999999998644 677776

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A

Probab=98.74  E-value=1.4e-08  Score=62.58  Aligned_cols=46  Identities=17%  Similarity=0.193  Sum_probs=37.9

Q ss_pred             EecCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeCCCC
Q psy7035          17 IVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGLGI   62 (70)
Q Consensus        17 ~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~p~~   62 (70)
                      +..+++|.|.+++.+|+|.|+|.|.|..+...+..+.|.|...|..
T Consensus        73 ~~~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~  118 (231)
T 2pet_A           73 LDSQGRLVLAEAQVGDERDYVCVVRAGAAGTAEATARLNVFAKPEA  118 (231)
T ss_dssp             ECTTCCEEESSCCGGGCEEEEEEEECGGGCEEEEEEEEEEEBCCCC
T ss_pred             cCCCceEEEcccCcccCceEEEEEEecCCCceEEEEEEEEEecCCC
Confidence            3456789999999999999999999987344567899999977654

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}

Probab=98.74  E-value=3.4e-09  Score=67.43  Aligned_cols=53  Identities=9%  Similarity=0.086  Sum_probs=41.9

Q ss_pred             CeEcCcCccceEEecCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEe
Q psy7035           5 NVQLYNNISAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDI   58 (70)
Q Consensus         5 g~~l~~~~~~~~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~   58 (70)
                      |.++..+. +.....+++|+|.+++.+|+|.|+|.|.|..|...+..+.|.|..
T Consensus       129 ~~~~~~~~-~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~  181 (292)
T 4dkd_C          129 GRPLMRHT-NYSFSPWHGFTIHRAKFIQSQDYQCSALMGGRKVMSISIRLKVQK  181 (292)
T ss_dssp             GCCCCSSC-CEECCSSSCCEETTCCGGGCSEEEEEECSTTSCEECCCEEEEEEC
T ss_pred             CCccccCC-cccccCCceEEECCCCHHHCeEEEEEEEeCCCceeEEEEEEEEeC
Confidence            45544332 333445677999999999999999999999888888889999986

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C*

Probab=98.74  E-value=1.3e-08  Score=61.38  Aligned_cols=39  Identities=18%  Similarity=0.308  Sum_probs=32.9

Q ss_pred             cCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeCC
Q psy7035          19 SNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGL   60 (70)
Q Consensus        19 ~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~p   60 (70)
                      .+++|.|.+++++|+|.|+|.|.|..+   +..+.|.|..+|
T Consensus        52 ~~~~L~i~~~~~~d~G~Y~C~~~n~~~---s~~~~l~V~~~~   90 (175)
T 1fnl_A           52 QASSYFIDAATVNDSGEYRCQTNLSTL---SDPVQLEVHIGW   90 (175)
T ss_dssp             SCSEEEESSCCGGGCEEEEEECSSSCC---CCCEEEEEECSS
T ss_pred             CceEEEEeCCCcccCEEEEEEeeCCcc---cccEEEEEeCCC
Confidence            467999999999999999999999654   567889998543

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A

Probab=98.73  E-value=6.3e-09  Score=64.93  Aligned_cols=41  Identities=7%  Similarity=0.005  Sum_probs=34.3

Q ss_pred             CEEEEcccCCCCCeeeEEEeEeCCCcc------cceeEEEEEEeCCC
Q psy7035          21 QSLVLQNVSRARAGHYTCVGSNGEGDG------QSNAQKTAYDIGLG   61 (70)
Q Consensus        21 ~tL~i~~v~~~D~G~Y~C~a~N~~G~~------~s~~~~L~V~~~p~   61 (70)
                      .+|+|..++.+|.|.|+|.|+|..|..      .+.++.|.|+|+|.
T Consensus       154 ~~l~i~~~~~d~~g~ytC~A~n~~~~~~~~~~~~~~~~~L~V~y~P~  200 (202)
T 1vca_A          154 LEVTFTPVIEDIGKVLVCRAKLHIDEMDSVPTVRQAVKELQVYISPK  200 (202)
T ss_dssp             EEEEECCCGGGTTCEEEEEEEECSCCCTTSCSEEEEEEECCEECCC-
T ss_pred             EEEEEEeeeccCCCeEEEEEEccccCCCCcceeEeeEEEEEEecCCC
Confidence            357899998899999999999998864      45689999999985

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens}

Probab=98.73  E-value=6.1e-09  Score=75.19  Aligned_cols=48  Identities=25%  Similarity=0.279  Sum_probs=43.0

Q ss_pred             CEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeCCCCCCCCcc
Q psy7035          21 QSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGLGIPAEPLF   68 (70)
Q Consensus        21 ~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~p~~~~~p~~   68 (70)
                      ++|+|.++++.|+|.|+|.|.|..|...+..+.|.|...|..|..|..
T Consensus       223 ~~l~I~~~~~~d~g~Y~c~A~n~~G~~~s~~~~l~V~~~P~~~~~p~~  270 (731)
T 2v5y_A          223 ASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVVKEPPVPIAPPQL  270 (731)
T ss_dssp             EEEEECSCCTTTCEEEEEEEEETTEEEECCCEEEEEECCCCBSSCCEE
T ss_pred             EEEEEcccccccCeEEEEEEECCCCCcceeeEEEEEecCCCCCCCcce
Confidence            699999999999999999999999986777899999988887777743

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}

Probab=98.73  E-value=1.1e-08  Score=64.06  Aligned_cols=39  Identities=15%  Similarity=0.278  Sum_probs=32.2

Q ss_pred             cCCEEEEcccCCCCCeeeEEEeEeCCCcc--cceeEEEEEE
Q psy7035          19 SNQSLVLQNVSRARAGHYTCVGSNGEGDG--QSNAQKTAYD   57 (70)
Q Consensus        19 ~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~--~s~~~~L~V~   57 (70)
                      ...+|+|.+++.+|+|.|+|.|.|..|..  .|..+.|.|+
T Consensus       221 ~~~~L~i~~v~~~d~G~Y~C~a~n~~G~~~~~s~~~~l~V~  261 (262)
T 3rjd_A          221 TSSEYQILTARREDSGLYWCEAATEDGNVLKRSPELELQVL  261 (262)
T ss_dssp             SCCEEEESSCCGGGCEEEEEEEEETTSSCEEECCCEEECEE
T ss_pred             CCceEEEEEechhhCeEEEEEEEcccCceEEecCCeEEEEe
Confidence            45689999999999999999999999974  3556666664

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=98.73  E-value=1.7e-08  Score=65.49  Aligned_cols=58  Identities=19%  Similarity=0.137  Sum_probs=43.5

Q ss_pred             cccCeEcCcCccc---eEEecCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeCC
Q psy7035           2 SFSNVQLYNNISA---GVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGL   60 (70)
Q Consensus         2 ~~ng~~l~~~~~~---~~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~p   60 (70)
                      ++||+++..+.+.   .....+.+|.|.+++++|+|.|+|.|.|..|.. +..+.|.|.+.+
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~-~~~~~l~V~~~~  218 (334)
T 1ry7_B          158 LKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSI-RQTYTLDVLERS  218 (334)
T ss_dssp             CBTTBCCCTTSSTTCCCCCTTTTEEEECSCCGGGCCCEEEEEEETTEEE-EEEEEEEEECCC
T ss_pred             EECCEECcccccccceecccceEEEEECCCCcccCEEEEEEEEeCCCCE-EEEEEEEEecCC
Confidence            5677777654332   112245699999999999999999999999875 557889998643

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}

Probab=98.72  E-value=2.5e-08  Score=63.57  Aligned_cols=38  Identities=18%  Similarity=0.354  Sum_probs=26.6

Q ss_pred             CEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEe
Q psy7035          21 QSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDI   58 (70)
Q Consensus        21 ~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~   58 (70)
                      ++|.|.+++.+|+|.|+|.|.|..|...+....+.|..
T Consensus        51 ~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~~~~v~v   88 (289)
T 3mjg_X           51 SVLTLTNLTGLDTGEYFCTHNDSRGLETDERKRLYIFV   88 (289)
T ss_dssp             EEEEECSCCGGGCEEEEEECCC------CCCEEEEEEC
T ss_pred             EEEEEccCChhhCEEEEEEEcccCCCCcCcEEeEEEEE
Confidence            58999999999999999999999987544455555554

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}

Probab=98.71  E-value=1.7e-08  Score=64.52  Aligned_cols=54  Identities=13%  Similarity=0.172  Sum_probs=41.2

Q ss_pred             cccCeEcCcCccceEEecC--CEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEE
Q psy7035           2 SFSNVQLYNNISAGVIVSN--QSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYD   57 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~~~~--~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~   57 (70)
                      +|||+++..+.+..+...+  .+|+|.+++.+|+|.|+|.|.|..|...  ++.|.|.
T Consensus        37 ~k~~~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~~~n~~g~~~--s~~l~v~   92 (312)
T 2y23_A           37 SKDYVSTEDSPRLEVESKGNKTKMTFKDLGMDDLGIYSCDVTDTDGIAS--SYLIDEE   92 (312)
T ss_dssp             EETTEECTTCTTEEEEEETTEEEEEESSCCGGGCEEEEEEESSSCCCCE--EEEECHH
T ss_pred             EECCEECCCCCCEEEEEeCCEEEEEECcCCccCCEEEEEEEEeCCCcEE--EEEEEEe
Confidence            5788888766555444433  5899999999999999999999998554  4555554

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus}

Probab=98.71  E-value=2.1e-08  Score=61.82  Aligned_cols=41  Identities=17%  Similarity=0.070  Sum_probs=34.6

Q ss_pred             ecCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeCC
Q psy7035          18 VSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGL   60 (70)
Q Consensus        18 ~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~p   60 (70)
                      ..+++|+|.+++.+|+|.|+|.+.+..  ..+..+.|.|...+
T Consensus        66 ~~~~sL~I~~v~~~D~G~Y~C~v~~~~--~~~~~~~L~V~~~~  106 (180)
T 2dru_A           66 KTNGALRIYNVSKEDRGDYYMRMLHET--EDQWKITMEVYEMV  106 (180)
T ss_dssp             TTTCCEEECSCCGGGCEEEEEEEESSS--EEEEEEEEEEECCC
T ss_pred             CCCccEEEcCCCHHHCeEEEEEEEcCC--eEEEEEEEEEECCC
Confidence            478899999999999999999998865  45667899998543

>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor, adhesion, structural genomics, NEW YORK STR genomics research consortium, nysgrc; 1.70A {Homo sapiens} PDB: 3rq3_A 3udw_A* 3ucr_A

Probab=98.71  E-value=3.2e-08  Score=57.60  Aligned_cols=42  Identities=17%  Similarity=0.192  Sum_probs=32.8

Q ss_pred             cCCEEEEcccCCCCCeeeEEEeEe-CCCcccceeEEEEEEeCCC
Q psy7035          19 SNQSLVLQNVSRARAGHYTCVGSN-GEGDGQSNAQKTAYDIGLG   61 (70)
Q Consensus        19 ~~~tL~i~~v~~~D~G~Y~C~a~N-~~G~~~s~~~~L~V~~~p~   61 (70)
                      .+.+|+|.+++.+|+|.|+|.+.+ ..|. .+..+.|.|..+|.
T Consensus        69 ~~~sL~I~~v~~~D~G~Y~C~v~~~~~g~-~~~~~~L~V~~pp~  111 (117)
T 3q0h_A           69 PGLGLTLQSLTVNDTGEYFCIYHTYPDGT-YTGRIFLEVLESSV  111 (117)
T ss_dssp             STTCEEECSCCGGGCEEEEEEEEEETTCC-EEEEEEEEEECC--
T ss_pred             CceEEEEeeCChhhCEEEEEEEEECCCCC-eEEEEEEEEEccCc
Confidence            467999999999999999998654 5565 45678999985553

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}

Probab=98.71  E-value=1.7e-08  Score=64.54  Aligned_cols=56  Identities=14%  Similarity=0.086  Sum_probs=45.0

Q ss_pred             cccCeEcCcCccceEEecCCEEEEcccCCCCCe-eeEEEeEeCCCcccceeEEEEEEe
Q psy7035           2 SFSNVQLYNNISAGVIVSNQSLVLQNVSRARAG-HYTCVGSNGEGDGQSNAQKTAYDI   58 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~~~~~tL~i~~v~~~D~G-~Y~C~a~N~~G~~~s~~~~L~V~~   58 (70)
                      ++||+++..+. +.....+++|.|.+++.+|+| .|+|.|.|..|...+..+.|.|.+
T Consensus       127 ~~~g~~l~~~~-~~~~~~~~~L~i~~v~~~d~G~~Y~C~a~n~~~~~~s~~~~l~V~~  183 (290)
T 2o26_X          127 ECDGKSLPTDL-TFVPNPKAGITIKNVKRAYHRLCVRCAAQRDGTWLHSDKFTLKVRE  183 (290)
T ss_dssp             ETTSCCCCTTC-EEEEETTTEEEEESCCGGGTTCEEEEEEEETTEEEECCCEEEEEEC
T ss_pred             eCCCcCCCCCC-ceeeCCCCCEEEecccHHHCCCEEEEEEEECCceEEeEEEEEEEEe
Confidence            36888876543 334456789999999999999 999999999777677789999984

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*

Probab=98.71  E-value=4.7e-08  Score=63.89  Aligned_cols=47  Identities=15%  Similarity=0.067  Sum_probs=39.0

Q ss_pred             ceEEecCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeCCC
Q psy7035          14 AGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGLG   61 (70)
Q Consensus        14 ~~~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~p~   61 (70)
                      ..+...+++|.|.+++.+|+|.|+|.|.|..|.... .+.|.|...|.
T Consensus        72 ~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~~~~-~~~l~V~~~~~  118 (349)
T 4dep_C           72 NRISKEKDVLWFRPTLLNDTGNYTCMLRNTTYCSKV-AFPLEVVQKDS  118 (349)
T ss_dssp             GCEEEETTEEEESSCCGGGCEEEEEEEECSSCEEEE-EEEEEEECCCT
T ss_pred             ceEeecCCEEEEccCChhhCEEEEEEEecCCceEEE-EEEEEEecCCc
Confidence            345567889999999999999999999999887544 68899987554

>1pko_A Myelin oligodendrocyte glycoprotein; IGV-domain, immune system; 1.45A {Rattus norvegicus} SCOP: b.1.1.1 PDB: 1pkq_E 3csp_A 1py9_A

Probab=98.70  E-value=2.3e-08  Score=58.88  Aligned_cols=36  Identities=25%  Similarity=0.325  Sum_probs=32.0

Q ss_pred             CEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEE
Q psy7035          21 QSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYD   57 (70)
Q Consensus        21 ~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~   57 (70)
                      .+|.|.+++.+|+|.|+|.+.|..|. .+..+.|.|.
T Consensus        85 ~sL~I~~v~~~D~G~Y~C~v~~~~~~-~~~~~~L~V~  120 (139)
T 1pko_A           85 VALRIQNVRFSDEGGYTCFFRDHSYQ-EEAAVELKVE  120 (139)
T ss_dssp             EEEEESSCCGGGCEEEEEEEEETTEE-EEEEEEEEEE
T ss_pred             EEEEEccCCHHHCEEEEEEEEcCCCc-eEEEEEEEEe
Confidence            48999999999999999999998875 4557899998

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D

Probab=98.70  E-value=3.4e-09  Score=68.92  Aligned_cols=38  Identities=18%  Similarity=0.266  Sum_probs=23.8

Q ss_pred             CEEEEcccCCCCCeeeEEEeEeCCCc----ccceeEEEEEEeCC
Q psy7035          21 QSLVLQNVSRARAGHYTCVGSNGEGD----GQSNAQKTAYDIGL   60 (70)
Q Consensus        21 ~tL~i~~v~~~D~G~Y~C~a~N~~G~----~~s~~~~L~V~~~p   60 (70)
                      ++|.|.+++  |+|.|+|.|.|..+.    ..|.++.|.|...|
T Consensus       274 ~~L~i~~v~--D~G~Y~C~a~n~~~~~~~s~~S~~~~l~V~g~p  315 (316)
T 3vh8_G          274 ADFPLGPAT--HGGTYRCFGSFRHSPYEWSDPSDPLLVSVTGNP  315 (316)
T ss_dssp             EEEECC-------CEEEEEEEBTTBTTEECCCCCCEEC------
T ss_pred             EEEEcCCcC--CCEEEEEEeecCCCchhccCCCCcEEEEEeCCC
Confidence            589999999  999999999998664    67889999998555

>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*

Probab=98.70  E-value=8.9e-09  Score=64.99  Aligned_cols=39  Identities=21%  Similarity=0.244  Sum_probs=33.9

Q ss_pred             CEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeCC
Q psy7035          21 QSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGL   60 (70)
Q Consensus        21 ~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~p   60 (70)
                      .+|.|.+++.+|+|.|+|.|.|..|... ..+.|.|..+|
T Consensus        69 ~~L~I~~v~~~D~G~Y~C~a~n~~g~~~-~~~~l~V~~p~  107 (203)
T 4fa8_A           69 FFLVVTAANISHDGNYLCRMKLGETEVT-KQEHLSVVKPL  107 (203)
T ss_dssp             EEEEESSCCGGGCEEEEEEEEETTEEEE-EEEEEEEEEEE
T ss_pred             EEEEEccCCHHHCeEEEEEEEcCCCcEE-EEEEEEecCCc
Confidence            4799999999999999999999999764 46889998655

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}

Probab=98.70  E-value=8.4e-09  Score=71.06  Aligned_cols=39  Identities=21%  Similarity=0.138  Sum_probs=33.8

Q ss_pred             cCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeCCC
Q psy7035          19 SNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGLG   61 (70)
Q Consensus        19 ~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~p~   61 (70)
                      .+++|+|.+++++|+|.|+|.|.|.    .+..+.|.|.+.|.
T Consensus       288 ~~~~L~I~~v~~~D~G~Y~C~A~N~----~~~~~~L~V~~~p~  326 (423)
T 3qs7_E          288 RILFAFVSSVARNDTGYYTCSSSKH----PSQSALVTIVEKGF  326 (423)
T ss_dssp             EEEEEEESSCCTTTCEEEEEEETTE----EEEEEEEEEESSCE
T ss_pred             EEEEEEEeecCHHHCEEEEEEEecC----CCceEEEEEEeCCc
Confidence            3458999999999999999999998    57789999987664

>1eaj_A Coxsackie virus and adenovirus receptor; virus/viral protein receptor, immunoglobulin V domain fold, symmetric dimer; 1.35A {Homo sapiens} SCOP: b.1.1.1 PDB: 1f5w_A 2j12_B 2j1k_A 2wbw_B* 2w9l_A* 1rsf_A 1jew_R 1kac_B 1p69_B 1p6a_B

Probab=98.70  E-value=1.8e-08  Score=57.00  Aligned_cols=36  Identities=17%  Similarity=0.249  Sum_probs=31.7

Q ss_pred             CEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEE
Q psy7035          21 QSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYD   57 (70)
Q Consensus        21 ~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~   57 (70)
                      .+|+|.+++.+|+|.|.|.+.|..|. .+..+.|.|.
T Consensus        89 ~sL~I~~v~~~D~G~Y~C~v~~~~~~-~~~~~~L~V~  124 (126)
T 1eaj_A           89 ASINVTNLQLSDIGTYQCKVKKAPGV-ANKKIHLVVL  124 (126)
T ss_dssp             CCEEECSCCGGGCEEEEEEEEETTEE-EEEEEEEEEE
T ss_pred             EEEEECcCChHHCeEEEEEEEcCCcc-CCcEEEEEEE
Confidence            68999999999999999999998775 4567889886

>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=98.69  E-value=9.6e-09  Score=66.26  Aligned_cols=40  Identities=20%  Similarity=0.316  Sum_probs=33.9

Q ss_pred             cCCEEEEcccCCCCCeeeEEEeEeCCC-cccceeEEEEEEe
Q psy7035          19 SNQSLVLQNVSRARAGHYTCVGSNGEG-DGQSNAQKTAYDI   58 (70)
Q Consensus        19 ~~~tL~i~~v~~~D~G~Y~C~a~N~~G-~~~s~~~~L~V~~   58 (70)
                      .+++|.|.+|+++|+|.|+|.+.|..+ ...|.++.|.|..
T Consensus        58 ~~~~L~I~~v~~~DsG~Y~C~~~~~~~~s~~S~~~~L~V~~   98 (242)
T 1p6f_A           58 NKVKFYIPDMNSRMAGQYSCIYRVGELWSEPSNLLDLVVTE   98 (242)
T ss_dssp             CEEEEEECSCCGGGCEEEEEEEEETTEECCCCCCEEEEEEC
T ss_pred             ceeEEEecCCCcccCeEEEEEEecCCccccCCcceEEEeec
Confidence            456899999999999999999999755 3457889999974

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A

Probab=98.69  E-value=4.6e-08  Score=59.43  Aligned_cols=59  Identities=22%  Similarity=0.257  Sum_probs=42.8

Q ss_pred             cccCeEcCcCc----cceEEecCCEEEE-----cccCCCCCeeeEEEeEeCCCcccceeEEEEEEeCC
Q psy7035           2 SFSNVQLYNNI----SAGVIVSNQSLVL-----QNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGL   60 (70)
Q Consensus         2 ~~ng~~l~~~~----~~~~~~~~~tL~i-----~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~p   60 (70)
                      ++||..+....    .......++.+.+     .+++.+|+|.|+|.|.|..|...+..+.|.|.+.|
T Consensus        44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~~l~V~~~~  111 (212)
T 2v9r_A           44 YKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAILR  111 (212)
T ss_dssp             EETTEECCCTTTCTTCSEEECTTSCEEESSCCCCSSCCCSCEEEEEEEEETTEEEECCCEEEEECEEC
T ss_pred             EECCEEeeccccccccceEEecCCcEEEEEEEecCCCcccCeEEEEEEECCCCceeecceEEEEEecc
Confidence            46777775322    1234456665554     45699999999999999999877778899998754

>3sob_L Antibody light chain; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L*

Probab=98.68  E-value=4.9e-08  Score=60.49  Aligned_cols=39  Identities=13%  Similarity=0.159  Sum_probs=33.3

Q ss_pred             CCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEe
Q psy7035          20 NQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDI   58 (70)
Q Consensus        20 ~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~   58 (70)
                      +.+|+|.+++.+|+|.|+|.|.|..+...+....|.|..
T Consensus        93 ~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~  131 (237)
T 3sob_L           93 DFTLTISSLQPEDFATYYCQQSYTTPPTFGQGTKVEIKR  131 (237)
T ss_dssp             EEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEEC
T ss_pred             EEEEEECCCChhhCeEEEEeeccCCceEEcCcEEEEEec
Confidence            457999999999999999999998876666677888874

>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A

Probab=98.68  E-value=1.5e-08  Score=62.43  Aligned_cols=53  Identities=23%  Similarity=0.243  Sum_probs=36.8

Q ss_pred             cccCeEcCcCccceEEe---cCCEEEEcccCCCCCeeeEEEeEeC----CCcccceeEEEEE
Q psy7035           2 SFSNVQLYNNISAGVIV---SNQSLVLQNVSRARAGHYTCVGSNG----EGDGQSNAQKTAY   56 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~~---~~~tL~i~~v~~~D~G~Y~C~a~N~----~G~~~s~~~~L~V   56 (70)
                      +|||+.+..........   .+++|+|.+|+  |+|.|+|.|++.    ..+..|+++.|.|
T Consensus       141 ~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~--d~G~Y~C~a~~~~~~~~~s~~S~~~~l~V  200 (201)
T 1nkr_A          141 SREGEAHERRLPAGPKVNGTFQADFPLGPAT--HGGTYRCFGSFHDSPYEWSKSSDPLLVSV  200 (201)
T ss_dssp             EETTCSSCEEEECEEEETTEEEEEEEEEECC--SCEEEEEEEEETTEEEEECCCCCCEEEEE
T ss_pred             EECCcccCcccccccccCCceEEEEEeCCcC--CCeeEEEEEEcCCCCCcCCCCCCCEEEEe
Confidence            46777665332212211   25689999998  999999999975    3445688888887

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E

Probab=98.67  E-value=5.3e-08  Score=64.34  Aligned_cols=37  Identities=14%  Similarity=-0.020  Sum_probs=32.4

Q ss_pred             CCEEEEcccCCCCCeeeEEEeEeC--CCcccceeEEEEEE
Q psy7035          20 NQSLVLQNVSRARAGHYTCVGSNG--EGDGQSNAQKTAYD   57 (70)
Q Consensus        20 ~~tL~i~~v~~~D~G~Y~C~a~N~--~G~~~s~~~~L~V~   57 (70)
                      +.+|+|.+++.+|+|.|+|.|.|.  .|. .+..+.|.|.
T Consensus       254 ~~~L~i~~v~~~d~G~Y~C~a~n~~~~g~-~~~~~~l~V~  292 (363)
T 1wio_A          254 PLHLTLPQALPQYAGSGNLTLALEAKTGK-LHQEVNLVVM  292 (363)
T ss_dssp             SCEEEESSBCGGGCEEEEEEECBTTTTCC-EEEEEEEEEE
T ss_pred             ceEEEEccCCcCcCcEEEEEEEEhhhcCe-EEEEEeEEEE
Confidence            349999999999999999999999  895 4667888887

>4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus}

Probab=98.66  E-value=2.3e-08  Score=61.59  Aligned_cols=43  Identities=12%  Similarity=0.000  Sum_probs=31.5

Q ss_pred             EEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeCCCCCCCC
Q psy7035          23 LVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGLGIPAEP   66 (70)
Q Consensus        23 L~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~p~~~~~p   66 (70)
                      |.|.+++.+|+|.|+|.|.|..|.. +..+.|.|...|....+|
T Consensus       172 l~i~~v~~~d~G~Y~C~a~n~~g~~-~~~~~l~V~~~p~~~~~~  214 (222)
T 4i0k_A          172 HSVLRVVLGANGTYSCLVRNPVLQQ-DAHGSVTITGQPLTFPPE  214 (222)
T ss_dssp             EEEEEEECCTTCEEEEEEEETTTTE-EEEEEEECCC--------
T ss_pred             EEEEEEEeCCCCEEEEEEECCCCCC-ceEEEEEEeCCccccCCc
Confidence            8999999999999999999999975 457889988766544433

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A

Probab=98.66  E-value=3e-08  Score=60.89  Aligned_cols=41  Identities=20%  Similarity=0.253  Sum_probs=33.7

Q ss_pred             CEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeCCCCC
Q psy7035          21 QSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGLGIP   63 (70)
Q Consensus        21 ~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~p~~~   63 (70)
                      .+|.|.+++.+|+|.|+|.|.| .| ..+..+.|.|...|..+
T Consensus        80 ~~L~I~~v~~~D~G~Y~C~~~~-~~-~~~~~~~l~V~~~~~~~  120 (222)
T 3sbw_C           80 AALQITDVKLQDAGVYRCMISY-GG-ADYKRITVKVNAPYNKI  120 (222)
T ss_dssp             EEEEESSCCGGGCEEEEEEEES-SS-EEEEEEEEEEEBCCCCC
T ss_pred             EEEEEcCcccccCeEEEEEEEe-CC-CceeEEEEEEECCCCCC
Confidence            4899999999999999999999 44 35667899998665443

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A*

Probab=98.66  E-value=3.2e-08  Score=59.57  Aligned_cols=38  Identities=21%  Similarity=0.219  Sum_probs=31.9

Q ss_pred             cCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeC
Q psy7035          19 SNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIG   59 (70)
Q Consensus        19 ~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~   59 (70)
                      .+++|.|.+++.+|+|.|+|.|.|..+   +..+.|.|..+
T Consensus        49 ~~~~L~i~~v~~~d~G~Y~C~~~~~~~---s~~~~l~V~~~   86 (176)
T 1f2q_A           49 TNSSLNIVNAKFEDSGEYKCQHQQVNE---SEPVYLEVFSD   86 (176)
T ss_dssp             CSSEEEECSCCGGGCEEEEEECTTSSC---CCCEEEEEECS
T ss_pred             CceEEEEeccceecCEEEEEEcCCccc---cccEEEEEeCc
Confidence            357999999999999999999999655   45788888843

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A

Probab=98.66  E-value=7.5e-09  Score=63.85  Aligned_cols=38  Identities=16%  Similarity=0.227  Sum_probs=29.7

Q ss_pred             CEEEEcccCCCCCeeeEEEeEe-----CCCcccceeEEEEEEe
Q psy7035          21 QSLVLQNVSRARAGHYTCVGSN-----GEGDGQSNAQKTAYDI   58 (70)
Q Consensus        21 ~tL~i~~v~~~D~G~Y~C~a~N-----~~G~~~s~~~~L~V~~   58 (70)
                      ++|.|......|+|.|+|.|.|     ..|...+.++.|+|+|
T Consensus       189 ~~L~i~~~~~dd~g~Y~C~a~n~~~~~~~~~~~s~~~~l~V~y  231 (231)
T 2pet_A          189 STLYLRLRKDDRDASFHCAAHYSLPEGRHGRLDSPTFHLTLHY  231 (231)
T ss_dssp             EEEEEECCGGGGGCEEEEEEEEECGGGCEEEEECCCEECCCCC
T ss_pred             EEEEEecchhhCCceEEEEEEcCCcccccccccccceEEEEeC
Confidence            5688875555569999999999     5666577788888875

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens}

Probab=98.65  E-value=1.7e-08  Score=60.74  Aligned_cols=56  Identities=16%  Similarity=0.157  Sum_probs=38.8

Q ss_pred             cccCeEcC--cCccceEEecCCEEEEcccCCCCCeeeEEEeEeCCCcccc--eeEEEEEE
Q psy7035           2 SFSNVQLY--NNISAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQS--NAQKTAYD   57 (70)
Q Consensus         2 ~~ng~~l~--~~~~~~~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s--~~~~L~V~   57 (70)
                      ++||.++.  .+.+......+++|.|.+++.+|+|.|+|.|.|..+....  ..+.+.+.
T Consensus        45 ~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~~~~~~~  104 (201)
T 3s97_C           45 LLNEFPVFITMDKRRFVSQTNGNLYIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPI  104 (201)
T ss_dssp             EESSTTCBCCCSSSEEECTTTCCEEESSCCGGGCEEEEEEEEEGGGTEEEECCCEEEEEE
T ss_pred             EECCceeeeeeCCCeEEEcCCCeEEECcCCcccCeEEEEEEEecCCCcchhhcccceeec
Confidence            45666664  2333344456789999999999999999999997665443  34444443

>4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A*

Probab=98.65  E-value=3e-08  Score=60.03  Aligned_cols=43  Identities=12%  Similarity=0.118  Sum_probs=36.2

Q ss_pred             cCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeCCC
Q psy7035          19 SNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGLG   61 (70)
Q Consensus        19 ~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~p~   61 (70)
                      .+++|.|.+++.+|+|.|+|.|.|..|........+.+...|.
T Consensus        81 ~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~  123 (225)
T 4fmk_A           81 RDATLAFRGLRVEDEGNYTCEFATFPNGTRRGVTWLRVIAQPE  123 (225)
T ss_dssp             CBCCEEECSCCGGGCEEEEEEEEEETTEEEEEEEEEEEEBCCE
T ss_pred             CcEEEEEccCCHHHCcceEEEEEeCCCcceeeeeeeeeecCCc
Confidence            3568999999999999999999999888777777777775553

>1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer, SCFV, variable domain, immune system; 2.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=98.65  E-value=3.5e-08  Score=61.63  Aligned_cols=39  Identities=18%  Similarity=0.248  Sum_probs=34.0

Q ss_pred             EEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeCC
Q psy7035          22 SLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGL   60 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~p   60 (70)
                      +|+|.+++.+|+|.|+|.|.|..+...+..+.|.|...+
T Consensus        76 ~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~  114 (240)
T 1moe_A           76 TLIIDPVEADDVATYYCQQTNEDPYTFGGGTKLEIKGGG  114 (240)
T ss_dssp             EEEESSCCGGGCEEEEEEECSSSSCCBCCCEEEEECCCS
T ss_pred             EEEEcCCChhhCEEEEEEEccCCceeecCCEEEEEecCC
Confidence            899999999999999999999977656667889998654

>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ...

Probab=98.64  E-value=2e-08  Score=61.64  Aligned_cols=37  Identities=22%  Similarity=0.220  Sum_probs=32.8

Q ss_pred             EEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEe
Q psy7035          22 SLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDI   58 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~   58 (70)
                      +|.|.+++.+|+|.|+|.|.|..|...+..+.|.|..
T Consensus        72 ~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~  108 (213)
T 3d9a_L           72 TLSINSVETEDFGMYFCQQSNSWPYTFGGGTKLEIKR  108 (213)
T ss_dssp             EEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEECC
T ss_pred             EEEECCCChhhCEEEEEeeecCCcceeCCCEEEEEec
Confidence            8999999999999999999999887666667888864

>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=98.64  E-value=9.4e-09  Score=67.10  Aligned_cols=59  Identities=20%  Similarity=0.161  Sum_probs=40.8

Q ss_pred             cccCeEcCcCccceEE---ecCCEEEEcccCCCCCeeeEEEeEeC----CCcccceeEEEEEEeCCCC
Q psy7035           2 SFSNVQLYNNISAGVI---VSNQSLVLQNVSRARAGHYTCVGSNG----EGDGQSNAQKTAYDIGLGI   62 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~---~~~~tL~i~~v~~~D~G~Y~C~a~N~----~G~~~s~~~~L~V~~~p~~   62 (70)
                      +|||+.+.........   ..+++|.|.+|+  |+|.|+|.|.|.    .....|+++.|.|.+.|..
T Consensus       140 ~k~g~~~~~~~~~~~~~~~~~~~~l~I~~v~--D~G~Y~C~a~~~~~p~~~s~~S~pl~L~V~g~p~~  205 (257)
T 1b6u_A          140 SREGEAHERRFSAGPKVNGTFQADFPLGPAT--HGGTYRCFGSFRDSPYEWSNSSDPLLVSVTGNPSN  205 (257)
T ss_dssp             EETTSSCEECCBCBCCSSSCCBEEEEEEECC--SCEEEEEEEECSSCTTBBCCCCCCEEECCBCCC--
T ss_pred             EECCcccCcccccccccCCceeEEEEecccc--cCEEEEEEEEcCCCCcccccCCCCEEEEEeccCCC
Confidence            4677665432211111   125789999998  999999999985    3456788999999988764

>3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; anti-CD3epsilon, T-cell receptor, signalling, IMMU; 2.50A {Cricetulus migratorius} PDB: 3r08_L 3ld8_B 3ldb_B*

Probab=98.64  E-value=1.8e-08  Score=61.89  Aligned_cols=37  Identities=14%  Similarity=0.145  Sum_probs=32.4

Q ss_pred             CEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEE
Q psy7035          21 QSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYD   57 (70)
Q Consensus        21 ~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~   57 (70)
                      .+|+|.+++.+|+|.|+|.|.|..+...+....|.|.
T Consensus        71 ~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~  107 (213)
T 3r06_A           71 SSFTISSLESEDIGSYYCQQYYNYPWTFGPGTKLEIK  107 (213)
T ss_dssp             EEEEESSCCGGGCSEEEEEECSSSSCEECCCEEEEEC
T ss_pred             EEEEECCCCcccCEEEEEecccCCceEEcCCceEEEe
Confidence            3899999999999999999999887666777888884

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*

Probab=98.64  E-value=3.3e-08  Score=62.75  Aligned_cols=55  Identities=7%  Similarity=0.077  Sum_probs=42.6

Q ss_pred             ccCeEcCcCccceEEecCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEe
Q psy7035           3 FSNVQLYNNISAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDI   58 (70)
Q Consensus         3 ~ng~~l~~~~~~~~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~   58 (70)
                      +||..+..+. +.....+++|.|.+++.+|+|.|+|.|.|..+...+..+.|.|..
T Consensus       127 ~~~~~~~~~~-~~~~~~~~~L~i~~v~~~d~G~Y~C~a~~~~~~~~~~~~~l~V~~  181 (289)
T 3ejj_X          127 EGGRQVLRKT-VYFFSPWRGFIIRKAKVLDSNTYVCKTMVNGRESTSTGIWLKVNR  181 (289)
T ss_dssp             GGGEECCTTC-CEEEETTTEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEES
T ss_pred             cCCeecCCCc-cEEECCCCCEEEeecccccCEEEEEEEEeCCCccccccEEEEEEE
Confidence            4666665543 334457889999999999999999999966555567789999983

>1zox_A CLM-1; IG-superfamily, IG-V, NKP44-like, myeloid IG-like receptor, structural genomics, PSI, protein structure initiative; 2.10A {Mus musculus}

Probab=98.64  E-value=4.1e-08  Score=56.05  Aligned_cols=38  Identities=16%  Similarity=0.191  Sum_probs=31.8

Q ss_pred             EEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeCC
Q psy7035          22 SLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGL   60 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~p   60 (70)
                      +|+|.+++.+|+|.|.|.+.+. |...+..+.|.|..+|
T Consensus        75 sL~I~~~~~~DsG~Y~C~v~~~-~~~~~~~v~L~V~~~p  112 (113)
T 1zox_A           75 TVTMEDLRMSDAGIYWCGITKG-GLDPMFKVTVNIGPVP  112 (113)
T ss_dssp             EEEECSCCGGGCEEEEEEECCS-SSCCEEEEEEEEECC-
T ss_pred             EEEEccCCHHHCEEEEEeeEcC-CCCccEEEEEEEEcCC
Confidence            7999999999999999999987 4455678899997544

>4gos_A V-SET domain-containing T-cell activation inhibit; immunoglobulin domain, glycoprotein, disulfide bond, immunit adaptive immunity; HET: NAG BMA MAN; 1.59A {Homo sapiens}

Probab=98.64  E-value=2.5e-08  Score=58.84  Aligned_cols=35  Identities=31%  Similarity=0.451  Sum_probs=28.8

Q ss_pred             CEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEE
Q psy7035          21 QSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAY   56 (70)
Q Consensus        21 ~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V   56 (70)
                      -+|+|.+|+.+|+|.|+|.+.|..|.. +..+.|.|
T Consensus        84 ~sL~I~~v~~~D~G~Y~C~v~~~~g~~-~~~v~LkV  118 (125)
T 4gos_A           84 ASLRLKNVQLTDAGTYKCYIITSKGKG-NANLEYKT  118 (125)
T ss_dssp             CCEEESSCCGGGCEEEEEEEEETTEEE-EEEEEEEE
T ss_pred             EEEEECCCChHHCEEEEEEEEeCCCeE-EEEEEEEE
Confidence            489999999999999999999988865 33455555

>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*

Probab=98.62  E-value=3.2e-08  Score=62.43  Aligned_cols=36  Identities=19%  Similarity=0.296  Sum_probs=29.0

Q ss_pred             ceEEecCCEEEE---cccCCCCCeeeEEEeEeCCCcccc
Q psy7035          14 AGVIVSNQSLVL---QNVSRARAGHYTCVGSNGEGDGQS   49 (70)
Q Consensus        14 ~~~~~~~~tL~i---~~v~~~D~G~Y~C~a~N~~G~~~s   49 (70)
                      +..+..+|+|.|   .+++++|+|.|+|.|+|..|+++.
T Consensus       156 r~~~~~~g~l~il~i~~v~~~D~G~YtC~A~N~~G~a~~  194 (203)
T 4fa8_A          156 GVMKEKDGSLSVAVDLSLPKPWHLPVTCVGKNDKEEAHG  194 (203)
T ss_dssp             CCEECTTSCEEEEEEEEECSSCCCCEEEEEESSSCEEEE
T ss_pred             eEEEeCCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEE
Confidence            344567777655   689999999999999999998654

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}

Probab=98.62  E-value=3.4e-08  Score=63.29  Aligned_cols=55  Identities=15%  Similarity=0.158  Sum_probs=38.8

Q ss_pred             cccCeEcCcCccceEEecCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEE
Q psy7035           2 SFSNVQLYNNISAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYD   57 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~   57 (70)
                      +|||.++..+.+..+...+.+|.|.+++.+|+|.|+|.|.|..|.... .+.|.|.
T Consensus        42 ~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~~-~~~l~v~   96 (317)
T 2y25_A           42 YKDEREISVDEKHDFKDGICTLLITEFSKKDAGIYEVILKDDRGKDKS-RLKLVDE   96 (317)
T ss_dssp             EETTEEECCSCC-----CCEEEEETTCCSTTCSCEEEEEESSSCEEEE-EECCSTH
T ss_pred             EECCeEcCCCCcEEEECCeEEEEEccCCcccCeEEEEEEECCCCcEEE-EEEEEEe
Confidence            578888876554444444569999999999999999999999886533 4455443

>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A*

Probab=98.62  E-value=5e-08  Score=63.06  Aligned_cols=43  Identities=23%  Similarity=0.222  Sum_probs=37.3

Q ss_pred             cCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeCCCC
Q psy7035          19 SNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGLGI   62 (70)
Q Consensus        19 ~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~p~~   62 (70)
                      .+.+|.|.+|+.+|+|.|.|.|.|..|. .+..+.|.|++.|..
T Consensus        57 ~~~~L~I~~v~~~d~G~Y~C~a~n~~~~-~~~~~~ltV~~~P~~   99 (210)
T 1gsm_A           57 GRSVLTVRNASLSAAGTRVCVGSCGGRT-FQHTVQLLVYAFPNQ   99 (210)
T ss_dssp             SEEEEEECSCCGGGCEEEEEEEEETTEE-EEEEEEEEEEBCCSE
T ss_pred             CccEEEECccCcccCceEEEEEEeCCCc-eEEEEEEEEEecCCC
Confidence            4568999999999999999999998776 466899999988863

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}

Probab=98.61  E-value=3e-08  Score=68.29  Aligned_cols=39  Identities=15%  Similarity=0.123  Sum_probs=29.8

Q ss_pred             EEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeCCC
Q psy7035          22 SLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGLG   61 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~p~   61 (70)
                      +|.|.+|+++|+|.|+|.|.|..|.. +..+.|.|.++|-
T Consensus       104 sL~I~~v~~~D~G~Y~C~a~N~~g~~-~~~~~l~V~~~p~  142 (423)
T 3qs7_E          104 SMVILKMTETQAGEYLLFIQSEATNY-TILFTVSIRNTLL  142 (423)
T ss_dssp             EEEESSCCSSSCSEEEEEEEC--CEE-EEEEEEEEC----
T ss_pred             EEEEeecCcccCEEEEEEEEcCCCcE-EEEEEEEEecCcc
Confidence            69999999999999999999999975 4578899886554

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}

Probab=98.61  E-value=3.5e-08  Score=64.66  Aligned_cols=52  Identities=15%  Similarity=0.144  Sum_probs=37.6

Q ss_pred             cccCeEcCcCccceEEecCCEEEEcccCCCCCe-eeEEEeEeCCCcccceeEEEEE
Q psy7035           2 SFSNVQLYNNISAGVIVSNQSLVLQNVSRARAG-HYTCVGSNGEGDGQSNAQKTAY   56 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~~~~~tL~i~~v~~~D~G-~Y~C~a~N~~G~~~s~~~~L~V   56 (70)
                      +|||.++....++   ..+++|.|.+++.+|+| .|+|.|.|..|......+.+.+
T Consensus        73 ~k~~~~~~~~~~~---~~~~~L~i~~v~~~D~Gs~Y~C~a~n~~g~~~~~~~~~v~  125 (329)
T 3oq3_B           73 EKIGKTRRPLNRR---VKNGDLWIANYTSNDSHRRYLCTVTTKNGDCVQGIVRSHI  125 (329)
T ss_dssp             EECSSSCEECSTT---EETTEEEESSCCGGGGGCCEEEEEECTTSCEEEEEEEEEE
T ss_pred             EECCCCccccCce---eecceEEEcCCChHhCCCcEEEEEEeCCCceeeEEEEEEE
Confidence            3556555433333   46889999999999999 9999999999875554444333

>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L*

Probab=98.61  E-value=2.8e-08  Score=61.12  Aligned_cols=37  Identities=16%  Similarity=0.126  Sum_probs=32.3

Q ss_pred             EEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEe
Q psy7035          22 SLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDI   58 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~   58 (70)
                      +|.|.+++.+|+|.|+|.|.|..|...+....|.|..
T Consensus        71 ~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~  107 (210)
T 1lk3_L           71 TLTIDPVEADDTAIYFCQQSWNGPLTFGAGTKLELKR  107 (210)
T ss_dssp             EEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEECC
T ss_pred             EEEECCCCHHHCeEEEEEEEcCCCceeCCCEEEEEcC
Confidence            8999999999999999999999886666667888864

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster}

Probab=98.61  E-value=8.4e-08  Score=69.23  Aligned_cols=60  Identities=27%  Similarity=0.335  Sum_probs=49.0

Q ss_pred             cccCeEcCcCccceEEecCCEEEEcccCC-CCCeeeEEEeEeCCCcccceeEEEEEEeCCCC
Q psy7035           2 SFSNVQLYNNISAGVIVSNQSLVLQNVSR-ARAGHYTCVGSNGEGDGQSNAQKTAYDIGLGI   62 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~~~~~tL~i~~v~~-~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~p~~   62 (70)
                      ++||+++..+. +.....+++|.|.++++ +|+|.|+|.|.|..|...+..+.+.|...|..
T Consensus       561 ~k~~~~l~~~~-~~~~~~~~~l~i~~v~~~~d~G~Y~C~a~n~~g~~~~~~~~v~v~~~p~~  621 (816)
T 3dmk_A          561 ERDNRALPINR-KQKVFPNGTLIIENVERNSDQATYTCVAKNQEGYSARGSLEVQVMVLPRI  621 (816)
T ss_dssp             EETTEESCCST-TEEECTTSEEEESSCCHHHHCEEEEEEEEESSSCEEEEEEEEEEECCCCC
T ss_pred             EECCeEcccCC-ceEEecCCeEEEEecCccccCEEEEEEEEECCCceeeeeEEEEEecCCcc
Confidence            46788876554 34456889999999984 89999999999999987777889999887754

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A*

Probab=98.60  E-value=3.2e-08  Score=62.46  Aligned_cols=41  Identities=22%  Similarity=0.221  Sum_probs=34.0

Q ss_pred             cCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeCC
Q psy7035          19 SNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGL   60 (70)
Q Consensus        19 ~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~p   60 (70)
                      .+++|.|.+++.+|+|.|+|.|.|..|. .+..+.|.|...|
T Consensus       199 ~~~~L~i~~v~~~D~G~Y~C~a~n~~g~-~~~~~~l~V~~~~  239 (268)
T 3mj6_A          199 NDGSIKLQTVKESDQGIYTCSIYVGKLE-SRKTIVLHVVQDE  239 (268)
T ss_dssp             TBCCEEECSCCGGGCEEEEEEEEETTEE-EEEEEEEEEECC-
T ss_pred             CeEEEEECcCChhhCeEEEEEEEcCCce-EEEEEEEEEEcCC
Confidence            4679999999999999999999998886 4557888885443

>3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A

Probab=98.60  E-value=3.5e-08  Score=62.59  Aligned_cols=45  Identities=18%  Similarity=0.118  Sum_probs=34.8

Q ss_pred             EEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeCCCCCCCC
Q psy7035          22 SLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGLGIPAEP   66 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~p~~~~~p   66 (70)
                      +|+|.+++.+|+|.|+|.|.|..+.....-..|.|...++.|.+|
T Consensus       208 ~L~I~~v~~~DsG~Y~C~~~n~~~~~fg~gt~l~v~~~~~~~~~~  252 (253)
T 3uzq_A          208 TLTINPVEADDVATYFCQRSNEVPWTFGGGTKLEIKRPLEHHHHH  252 (253)
T ss_dssp             EEEESSCCGGGCEEEEEEECSSSSCCBCCCEEEEECCC-------
T ss_pred             EEEECCCCHHHCEEEEEEEccCCCcEECCCEEEEEcCCCCCcccC
Confidence            699999999999999999999887777778899998766665544

>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L*

Probab=98.60  E-value=4.7e-08  Score=59.93  Aligned_cols=39  Identities=13%  Similarity=0.128  Sum_probs=33.7

Q ss_pred             CCEEEEcccCCCCCeeeEEEeEeCCC--cccceeEEEEEEe
Q psy7035          20 NQSLVLQNVSRARAGHYTCVGSNGEG--DGQSNAQKTAYDI   58 (70)
Q Consensus        20 ~~tL~i~~v~~~D~G~Y~C~a~N~~G--~~~s~~~~L~V~~   58 (70)
                      +.+|.|.+++.+|+|.|+|.|.|..|  ...+..+.|.|..
T Consensus        69 ~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~  109 (213)
T 3mj8_L           69 MATLTISKAQAGDEADYYCQSWDGTNSAWVFGSGTKVTVLG  109 (213)
T ss_dssp             EEEEEESSCCGGGCEEEEEEEEETTTTEEEEBCCEEEEEEC
T ss_pred             EEEEEECCCChhhCEEEEEEeccCCcceeEEcCceEEEEeC
Confidence            45799999999999999999999988  4556678999983

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae}

Probab=98.58  E-value=7.9e-08  Score=59.82  Aligned_cols=40  Identities=15%  Similarity=0.116  Sum_probs=33.6

Q ss_pred             CCEEEEcccCCCCCeeeEEEeEeCCCccc----ceeEEEEEEeC
Q psy7035          20 NQSLVLQNVSRARAGHYTCVGSNGEGDGQ----SNAQKTAYDIG   59 (70)
Q Consensus        20 ~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~----s~~~~L~V~~~   59 (70)
                      +.+|.|.+++.+|+|.|+|.|.|..+...    +..+.|.|...
T Consensus        89 ~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~  132 (250)
T 2fbo_J           89 APTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGH  132 (250)
T ss_dssp             SCCEEECSCCGGGCEEEEEEEECTTCCSGGGEEEEEEEEEETTT
T ss_pred             cceEEEeeCChhhCeEEEEEeccCccCCcccccceeEEEEEecc
Confidence            35899999999999999999999887543    44788998754

>2oyp_A Hepatitis A virus cellular receptor 2; TIM-3, T-cell immunoglobulin mucin, signaling protein; 1.95A {Mus musculus} PDB: 3kaa_A*

Probab=98.57  E-value=6.6e-08  Score=54.09  Aligned_cols=36  Identities=22%  Similarity=0.255  Sum_probs=29.3

Q ss_pred             CEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEE
Q psy7035          21 QSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYD   57 (70)
Q Consensus        21 ~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~   57 (70)
                      .+|+|.+++.+|+|.|.|.+.|..+... ..+.|.|.
T Consensus        72 ~sL~I~~v~~~D~G~Y~C~v~~~~~~~~-~~~~l~V~  107 (109)
T 2oyp_A           72 VSLIIKNVTLDDHGTYCCRIQFPGLMND-KKLELKLD  107 (109)
T ss_dssp             CCEEECSCCGGGCEEEEEEECCSSTTCC-EEEEEEEE
T ss_pred             EeEEEccCCChhCeEEEEEEEcCCcccc-eEEEEEEE
Confidence            5899999999999999999999866433 35666664

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*

Probab=98.57  E-value=5.7e-08  Score=66.95  Aligned_cols=54  Identities=11%  Similarity=0.047  Sum_probs=41.3

Q ss_pred             cCeEcCcCccceEEecCCEEEEcccCCCCCe-eeEEEeEeCCCcccceeEEEEEEe
Q psy7035           4 SNVQLYNNISAGVIVSNQSLVLQNVSRARAG-HYTCVGSNGEGDGQSNAQKTAYDI   58 (70)
Q Consensus         4 ng~~l~~~~~~~~~~~~~tL~i~~v~~~D~G-~Y~C~a~N~~G~~~s~~~~L~V~~   58 (70)
                      ||+++..+. +.....+++|.|.+++.+|+| .|+|.|.|..|...+..+.|.|.+
T Consensus       152 ~g~~l~~~~-~~~~~~~~~L~i~~~~~~d~G~~Y~C~a~n~~~~~~s~~~~l~V~~  206 (524)
T 2ec8_A          152 QGKPLPKDL-RFIPDPKAGIMIKSVKRAYHRLCLHCSVDQEGKSVLSEKFILKVRP  206 (524)
T ss_dssp             SSCCCCSSC-EEEEETTTEEEEESCCGGGTTCEEEEEEC----CCCCCCEECCEEC
T ss_pred             CCcCcCCCC-ceeECCCccEEEeccchhhCCceEEEEEEECCceEEEEEEEEEEEe
Confidence            788776544 333456889999999999999 999999999888888889999984

>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}

Probab=98.57  E-value=2.4e-08  Score=60.23  Aligned_cols=36  Identities=14%  Similarity=0.023  Sum_probs=28.7

Q ss_pred             CEEEEcccCCCCCeeeEEEeEeCCCcccce-eEEEEE
Q psy7035          21 QSLVLQNVSRARAGHYTCVGSNGEGDGQSN-AQKTAY   56 (70)
Q Consensus        21 ~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~-~~~L~V   56 (70)
                      ++|.|.+++++|+|.|+|.|+|..|..... ++.|+|
T Consensus       175 s~L~i~~~~~~d~g~YtC~a~N~~g~~~~~~t~~v~V  211 (218)
T 4frw_A          175 SEFHLVPSRSMNGQPLTCVVSHPGLLQDQRITHILHV  211 (218)
T ss_dssp             EEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECCE
T ss_pred             EEEEEeeCCHHhCeEEEEEEEeCCCCeEEEEEEEEEE
Confidence            479999999999999999999999975432 344444

>2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens} PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A 3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L 3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ...

Probab=98.57  E-value=1.5e-07  Score=57.97  Aligned_cols=36  Identities=11%  Similarity=0.121  Sum_probs=30.2

Q ss_pred             EEEEcccCCCCCeeeEEEeEeCCC-cccceeEEEEEE
Q psy7035          22 SLVLQNVSRARAGHYTCVGSNGEG-DGQSNAQKTAYD   57 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N~~G-~~~s~~~~L~V~   57 (70)
                      +|.|.+++.+|+|.|+|.|.|..| ...+....|.|.
T Consensus        73 ~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~  109 (216)
T 2xzc_L           73 TLGITGLQTGDEADYYCGTWDSSLNPVFGGGTKLEIK  109 (216)
T ss_dssp             EEEECSCCGGGCEEEEEEEECTTSCEEEBCCEEEEEC
T ss_pred             EEEECCCCcccCEEEEEEEEeCCCcceECCCEEEEEc
Confidence            899999999999999999999877 333445678885

>2nms_A CMRF35-like-molecule 1; IG-superfamily, IG-V, NKP44-like, myeloid IG-like receptor, inhibitory receptor, myelo-monocytic cells; 2.60A {Homo sapiens}

Probab=98.56  E-value=1.1e-07  Score=56.10  Aligned_cols=47  Identities=13%  Similarity=0.174  Sum_probs=32.7

Q ss_pred             EEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeCCCCCCCCccc
Q psy7035          22 SLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGLGIPAEPLFR   69 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~p~~~~~p~~~   69 (70)
                      +|+|.+++.+|+|.|.|...+. +......+.|.|..+|..|.+|+|-
T Consensus        76 sL~I~~l~~~Dsg~Y~C~~~~~-~~~~~~~v~L~V~~~~~~~~~~~~~  122 (124)
T 2nms_A           76 TVTMEDLMKTDADTYWCGIEKT-GNDLGVTVQVTIDPAPVTQEETSSS  122 (124)
T ss_dssp             EEEECSCCGGGCEEEEEEEEET-TEEEEEEEEEEEECCC---------
T ss_pred             EEEEeCCCHHHCEEEEEEEEcC-CCCccEEEEEEEeCCCcCCCCcccC
Confidence            7999999999999999999876 3345567999999888888888764

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}

Probab=98.55  E-value=2.7e-08  Score=70.45  Aligned_cols=39  Identities=21%  Similarity=0.138  Sum_probs=32.1

Q ss_pred             cCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeCCC
Q psy7035          19 SNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGLG   61 (70)
Q Consensus        19 ~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~p~   61 (70)
                      .+++|.|.+++++|+|.|+|.|.|.    .+..+.|.|...|.
T Consensus       288 ~~~~L~I~~v~~~DsG~Y~C~a~N~----~~~~~~L~V~~~p~  326 (527)
T 3qs9_E          288 RILFAFVSSVARNDTGYYTCSSSKH----PSQSALVTIVEKGF  326 (527)
T ss_dssp             EEEEEEESSCCGGGCEEEEEEETTE----EEEEEEEEEC--CE
T ss_pred             eEEEEEEccCCcccCeEEEEEEEeC----CCceEEEEEEccCc
Confidence            3467999999999999999999998    56688999987664

>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens}

Probab=98.55  E-value=1e-07  Score=62.04  Aligned_cols=43  Identities=19%  Similarity=0.279  Sum_probs=34.6

Q ss_pred             CCEEEEcccCCCCCeeeEEEeEeCCCcc----cceeEEEEEEeCCCC
Q psy7035          20 NQSLVLQNVSRARAGHYTCVGSNGEGDG----QSNAQKTAYDIGLGI   62 (70)
Q Consensus        20 ~~tL~i~~v~~~D~G~Y~C~a~N~~G~~----~s~~~~L~V~~~p~~   62 (70)
                      +.+|.|.+++.+|+|.|+|.|.|..|..    .+..+.|.|...|..
T Consensus        73 ~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~~~~~l~V~~~p~~  119 (327)
T 2wng_A           73 DFSISISNITPADAGTYYCVKFRKGSPDTEFKSGAGTELSVRAKPSA  119 (327)
T ss_dssp             BCCEEECSCCGGGCEEEEEEEEESSTTCEEEEECCCEEEEEEBCCCC
T ss_pred             eeEEEEccCccccCeEEEEEeecCCCcceeEeecCcEEEEEEecCCC
Confidence            4589999999999999999999987642    235678999866543

>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A

Probab=98.54  E-value=1.1e-07  Score=58.17  Aligned_cols=40  Identities=15%  Similarity=0.095  Sum_probs=32.5

Q ss_pred             CEEEEcccCCCCCeeeEEEeEeCCCccc---ceeEEEEEEeCC
Q psy7035          21 QSLVLQNVSRARAGHYTCVGSNGEGDGQ---SNAQKTAYDIGL   60 (70)
Q Consensus        21 ~tL~i~~v~~~D~G~Y~C~a~N~~G~~~---s~~~~L~V~~~p   60 (70)
                      .+|.|.+++.+|+|.|+|.+.|..+...   +..+.|.|...|
T Consensus        82 ~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~  124 (214)
T 2zg1_A           82 CSLSIGDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTALI  124 (214)
T ss_dssp             CCEEECSCCGGGCEEEEEEEEETTTEEEECCSSCEEEEEECCC
T ss_pred             EEEEEccCCHhhCceEEEEEEcCCCceeeecCCceEEEEecCC
Confidence            4899999999999999999999864322   357889998644

>2ptt_A CD48 antigen; CD244, CD48, NK cell receptor, X-RAY, immune system; 1.63A {Mus musculus} PDB: 2ptv_A

Probab=98.53  E-value=1.4e-07  Score=53.55  Aligned_cols=37  Identities=16%  Similarity=0.093  Sum_probs=31.1

Q ss_pred             cCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEE
Q psy7035          19 SNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYD   57 (70)
Q Consensus        19 ~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~   57 (70)
                      .+.+|+|.+++.+|+|.|.|.+.+..  .....+.|.|.
T Consensus        71 ~~~sL~I~~v~~~DsG~Y~C~v~~~~--~~~~~~~L~V~  107 (110)
T 2ptt_A           71 NNGALHISNVRKEDKGTYYMRVLRET--ENELKITLEVF  107 (110)
T ss_dssp             TTCCEEESSCCGGGCEEEEEEEESSS--BCCEEEEEEEE
T ss_pred             CCccEEECCCCcccCeEEEEEEEcCC--CcEEEEEEEEE
Confidence            56799999999999999999998865  23447888887

>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus musculus} PDB: 2qhr_L 3ffd_B 4dcq_A

Probab=98.53  E-value=6.1e-08  Score=59.48  Aligned_cols=38  Identities=13%  Similarity=0.059  Sum_probs=31.7

Q ss_pred             CEEEEcccCCCCCeeeEEEeEeCCC----cccceeEEEEEEe
Q psy7035          21 QSLVLQNVSRARAGHYTCVGSNGEG----DGQSNAQKTAYDI   58 (70)
Q Consensus        21 ~tL~i~~v~~~D~G~Y~C~a~N~~G----~~~s~~~~L~V~~   58 (70)
                      .+|.|.+++.+|+|.|+|.|.|..|    ...+..+.|.|..
T Consensus        75 ~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~  116 (218)
T 3s96_B           75 RYLSISNIQPEDEAIYICGVGDTIKEQFVYVFGGGTKVTVLG  116 (218)
T ss_dssp             EEEEESSCCGGGCEEEEEEEEEEETTEEEEEECCCEEEEEES
T ss_pred             EEEEEccCCcccCEEEEEEEecCCCCceeEEEcCcEEEEEec
Confidence            4799999999999999999999876    2345567899884

>3rrq_A Protein PD-1, programmed cell death protein 1; programmed death-1, costimulatory, immune system; 2.10A {Homo sapiens}

Probab=98.53  E-value=1.2e-07  Score=56.08  Aligned_cols=41  Identities=12%  Similarity=0.070  Sum_probs=34.1

Q ss_pred             CEEEEcccCCCCCeeeEEEeEeCCCcc---cceeEEEEEEeCCC
Q psy7035          21 QSLVLQNVSRARAGHYTCVGSNGEGDG---QSNAQKTAYDIGLG   61 (70)
Q Consensus        21 ~tL~i~~v~~~D~G~Y~C~a~N~~G~~---~s~~~~L~V~~~p~   61 (70)
                      .+|+|.+++.+|+|.|.|.+.|..+..   .+..+.|.|...|.
T Consensus        75 ~sL~I~~~~~~Dsg~Y~C~~~~~~~~~~~~~s~~~~L~V~~~~~  118 (129)
T 3rrq_A           75 FHMSVVRARRNDSGTYLCGAISLAPKLQIKESLRAELRVTERRA  118 (129)
T ss_dssp             EEEEESSCCGGGCEEEEEEEEECGGGCEEEECCCEEEEEECCCC
T ss_pred             EEEEECCCChhHCEEEEEEEEecCCCceeeEeceEEEEEecCcc
Confidence            379999999999999999999987654   25568999986653

>1ncn_A T lymphocyte activation antigen CD86; IG V, beta strands, immune system; 2.70A {Homo sapiens} SCOP: b.1.1.1 PDB: 1i85_A

Probab=98.53  E-value=2.4e-07  Score=52.46  Aligned_cols=30  Identities=23%  Similarity=0.417  Sum_probs=26.4

Q ss_pred             ecCCEEEEcccCCCCCeeeEEEeEeCCCcc
Q psy7035          18 VSNQSLVLQNVSRARAGHYTCVGSNGEGDG   47 (70)
Q Consensus        18 ~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~   47 (70)
                      .++.+|.|.+++.+|+|.|.|.+.|..+..
T Consensus        66 ~~~~sL~I~~v~~~D~G~Y~C~v~~~~~~~   95 (110)
T 1ncn_A           66 SDSWTLRLHNLQIKDKGLYQCIIHHKKPTG   95 (110)
T ss_dssp             TTTTEEEECSCCGGGCEEEEEEEEEECSSS
T ss_pred             CCCEEEEEcCCChHHCEEEEEEEEcCCCCc
Confidence            356899999999999999999999987654

>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 3tnm_L 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A ...

Probab=98.53  E-value=7.5e-08  Score=59.06  Aligned_cols=38  Identities=16%  Similarity=0.099  Sum_probs=32.8

Q ss_pred             CCEEEEcccCCCCCeeeEEEeEeCCC-cccceeEEEEEE
Q psy7035          20 NQSLVLQNVSRARAGHYTCVGSNGEG-DGQSNAQKTAYD   57 (70)
Q Consensus        20 ~~tL~i~~v~~~D~G~Y~C~a~N~~G-~~~s~~~~L~V~   57 (70)
                      +.+|+|.+++.+|+|.|+|.|.|..| ...+..+.|.|.
T Consensus        67 ~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~  105 (211)
T 3tv3_L           67 TASLTVSGLQTDDEAVYYCGSLVGNWDVIFGGGTKLTVL  105 (211)
T ss_dssp             EEEEEEESCCGGGCEEEEEEEEETTTEEEECCCEEEEEC
T ss_pred             EEEEEECCCChhHCEEEEEEEecCCCceeECCCceEEEe
Confidence            34799999999999999999999988 455667888887

>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens}

Probab=98.52  E-value=4e-08  Score=64.01  Aligned_cols=55  Identities=7%  Similarity=-0.036  Sum_probs=32.3

Q ss_pred             cccCeEcCcCccc-eEEecCC------EEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEE
Q psy7035           2 SFSNVQLYNNISA-GVIVSNQ------SLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAY   56 (70)
Q Consensus         2 ~~ng~~l~~~~~~-~~~~~~~------tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V   56 (70)
                      +|||+++..+... .....++      +|.|.+++.+|+|.|+|.|+|..|...+..+.+.+
T Consensus       257 ~k~g~~l~~~~~~~~~~~~~g~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~~~~~s~~~~~~~  318 (327)
T 2wng_A          257 LENGNVSRTETASTVTENKDGTYNWMSWLLVNVSAHRDDVKLTCQVEHDGQPAVSKSHDLKV  318 (327)
T ss_dssp             EETTEEEEEEECCSCEECTTSCEEEEEEEEC-------CCEEEEEEEETTCCCEEEEEECC-
T ss_pred             EECCeEccCcccCceEECCCCcEEEEEEEEEccccccCCCEEEEEEEeCCCCCchhheEEEe
Confidence            5788887543211 1222233      48999999999999999999999988887765543

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}

Probab=98.52  E-value=2.6e-07  Score=57.70  Aligned_cols=39  Identities=18%  Similarity=0.265  Sum_probs=33.7

Q ss_pred             cCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEe
Q psy7035          19 SNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDI   58 (70)
Q Consensus        19 ~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~   58 (70)
                      .+++|.|.+++.+|+|.|+|.|.|..|. .+..+.|.|..
T Consensus       129 ~~~~l~i~~~~~~d~G~Y~C~~~n~~~~-~~~~~~l~V~~  167 (262)
T 3rjd_A          129 WNSNLTILKTNISHNGTYHCSGMGKHRY-TSAGISVTVKE  167 (262)
T ss_dssp             ECCCEEESSCCGGGCEEEEEEEESSSEE-EEECEEEEEEC
T ss_pred             CCCeEEEEECChhhCEEEEEEEeCCCCc-cccceEEEecc
Confidence            3678999999999999999999999854 46678899984

>4gjt_B Poliovirus receptor-related protein 4; six-bladed -propeller, IGV-like fold, viral entry, MV-H, NEC BETA4/BETA5 groove; HET: NAG; 3.10A {Homo sapiens}

Probab=98.52  E-value=1.1e-07  Score=55.40  Aligned_cols=36  Identities=25%  Similarity=0.341  Sum_probs=29.0

Q ss_pred             CEEEEcccCCCCCeeeEEEeEe-CCCcccceeEEEEEE
Q psy7035          21 QSLVLQNVSRARAGHYTCVGSN-GEGDGQSNAQKTAYD   57 (70)
Q Consensus        21 ~tL~i~~v~~~D~G~Y~C~a~N-~~G~~~s~~~~L~V~   57 (70)
                      .+|+|.+++.+|+|.|.|.+.+ ..|. .+..+.|+|+
T Consensus        80 ~sL~I~~v~~~DsG~Y~C~v~t~~~g~-~~~~~~L~Vl  116 (123)
T 4gjt_B           80 GSVLLRNAVQADEGEYECRVSTFPAGS-FQARLRLRVL  116 (123)
T ss_dssp             CCEEEESCCSSSCSEEEEEEEESSSCE-EEEEEEEEC-
T ss_pred             EEEEECCCChHHCEEEEEEEEECCCCe-EEeEEEEEEE
Confidence            4799999999999999998876 4554 4557889886

>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L* 1mfb_L* ...

Probab=98.52  E-value=2.8e-07  Score=56.51  Aligned_cols=37  Identities=11%  Similarity=0.014  Sum_probs=31.8

Q ss_pred             EEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEe
Q psy7035          22 SLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDI   58 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~   58 (70)
                      +|+|.+++.+|+|.|+|.|.|..+...+....|.|..
T Consensus        74 ~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~  110 (212)
T 1q0x_L           74 ALTITGAQTEDEAIYFCALWSNNKLVFGGGTKLTVLG  110 (212)
T ss_dssp             EEEESSCCGGGCEEEEEEEECSSCEEECCCEEEEECC
T ss_pred             EEEECCCCccCCEEEEEEEecCchhhcCCCeEEEEec
Confidence            8999999999999999999998876555667788853

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A

Probab=98.51  E-value=9.5e-08  Score=59.40  Aligned_cols=52  Identities=4%  Similarity=-0.141  Sum_probs=30.1

Q ss_pred             CeEcCcCccceEEecCCE---EEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEE
Q psy7035           5 NVQLYNNISAGVIVSNQS---LVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYD   57 (70)
Q Consensus         5 g~~l~~~~~~~~~~~~~t---L~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~   57 (70)
                      |..+...........++.   +.+.+++.+|+|.|+|.|+|.+|.. ...+.|.|.
T Consensus       158 ~~~~~~~~~~~~~~~~g~~~v~s~l~v~~~d~G~YtC~a~N~~g~~-~~~~~v~v~  212 (226)
T 4f80_A          158 GENIPTVEAPVVADGVGLYAVAASVIMRGSSGEGVSCTIRSSLLGL-EKTASISIA  212 (226)
T ss_dssp             SCBCCCEECCCEECTTSCEEEEEEEEECC----CEEEEEEETTTTE-EEEEEECCC
T ss_pred             ceEcCCCceEEEECCCCcEEEEEEEEechhcCcEEEEEEEeCCCCe-EEEEEEEEC
Confidence            344443333333334553   3455789999999999999999975 445677764

>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}

Probab=98.51  E-value=1.3e-07  Score=60.78  Aligned_cols=42  Identities=12%  Similarity=0.229  Sum_probs=34.7

Q ss_pred             CCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeCCC
Q psy7035          20 NQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGLG   61 (70)
Q Consensus        20 ~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~p~   61 (70)
                      +++|+|.+++.+|+|.|+|.|.|..+...+..+.+.|...|.
T Consensus        73 ~~sL~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~~~v~~~~~  114 (308)
T 4fom_A           73 DATITLHNIGFSDSGKYICKAVTFPLGNAQSSTTVTVLVEPT  114 (308)
T ss_dssp             BCCEEECSCCGGGCEEEEEEEEETTTEEEEEEEEEEEEBCCE
T ss_pred             ceEEEEccCCHHHCEEEEEEEeeCCCcceeeeeEEEeeeccc
Confidence            468999999999999999999998655566678888876553

>3r08_E T-cell surface glycoprotein CD3 epsilon chain; antibody, T-cell receptor, signalling, immune SY; 4.10A {Cricetulus migratorius}

Probab=98.51  E-value=2.5e-08  Score=56.35  Aligned_cols=34  Identities=24%  Similarity=0.404  Sum_probs=28.0

Q ss_pred             cccCeEcCcCccceEEecCCEEEEccc-CCCCCeeeEEEeEe
Q psy7035           2 SFSNVQLYNNISAGVIVSNQSLVLQNV-SRARAGHYTCVGSN   42 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~~~~~tL~i~~v-~~~D~G~Y~C~a~N   42 (70)
                      +|||++|..+       .+++|+|.+| +.+|+|.|+|.|.+
T Consensus        32 ~kdg~~l~~~-------~~~~L~I~~v~~~~DsG~Y~C~A~t   66 (82)
T 3r08_E           32 EKNGQELPQK-------HDKHLVLQDFSEVEDSGYYVCYTPA   66 (82)
T ss_dssp             EETTEECTTC-------CSSCCBCCSCCTTTTCSCEEEECSS
T ss_pred             EECCEECcCC-------CCCEEEECccCccCcCEEEEEEEcc
Confidence            4778777543       5689999997 67999999999987

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A

Probab=98.50  E-value=6.9e-08  Score=57.32  Aligned_cols=38  Identities=16%  Similarity=0.157  Sum_probs=31.2

Q ss_pred             CCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeCC
Q psy7035          20 NQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGL   60 (70)
Q Consensus        20 ~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~p   60 (70)
                      .+.|.|.+++++|+|.|+|.|.|..+   +..+.|.|.+.|
T Consensus        50 ~~~~~~~~~~~~d~G~Y~C~~~~~~~---s~~~~l~v~~~~   87 (170)
T 3ry4_A           50 TQPSYRFKANNNDSGEYTCQTGQTSL---SDPVHLTVLFEW   87 (170)
T ss_dssp             CSSEEEEECCGGGCEEEEEEETTSBC---CCCEEEEEECCS
T ss_pred             ccceEEEecccccCeEEEEEEeCCCc---eEeEEEEEECCc
Confidence            45688899999999999999998543   557889998755

>2or8_A Hepatitis A virus cellular receptor 1 homolog; beta barrel, immunoglobulin fold, IGV domain, TIM, immune system; 2.50A {Mus musculus}

Probab=98.50  E-value=2.1e-07  Score=52.83  Aligned_cols=37  Identities=16%  Similarity=0.121  Sum_probs=28.4

Q ss_pred             CEEEEcccCCCCCeeeEEEeEeCCCccc-ceeEEEEEE
Q psy7035          21 QSLVLQNVSRARAGHYTCVGSNGEGDGQ-SNAQKTAYD   57 (70)
Q Consensus        21 ~tL~i~~v~~~D~G~Y~C~a~N~~G~~~-s~~~~L~V~   57 (70)
                      .+|+|.+++.+|+|.|.|.+.|..+... ...+.|.|.
T Consensus        73 ~sL~I~~v~~~DsG~Y~C~v~~~~~~~~~~~~~~l~V~  110 (116)
T 2or8_A           73 VSLTIENSVESDSGLYCCRVEIPGWFNDQKVTFSLQVK  110 (116)
T ss_dssp             CCEEESSCCGGGCEEEEEEECCSSTTCCEEEEEEEEEE
T ss_pred             EEEEECCCCcccCEEEEEEEEcCCcccccEEEEEEEEC
Confidence            5899999999999999999999754432 444555554

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A*

Probab=98.50  E-value=9.5e-08  Score=60.67  Aligned_cols=39  Identities=18%  Similarity=0.251  Sum_probs=31.0

Q ss_pred             ecCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeC
Q psy7035          18 VSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIG   59 (70)
Q Consensus        18 ~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~   59 (70)
                      ..+++|.  .++++|+|.|+|.|+|..|.. +..+.|.|+++
T Consensus       227 ~~~g~~~--~v~~~d~G~Y~C~a~N~~G~~-~~~~~l~V~~p  265 (265)
T 2oz4_A          227 LPIGESV--TVTRDLEGTYLCRARSTQGEV-TREVTVNVLSP  265 (265)
T ss_dssp             CCTTSCE--ECCGGGCEEEEEEEEETTEEE-EEEEEEEEECC
T ss_pred             CCCCcEE--EeehhhCeEEEEEEECCCCcE-EEEEEEEEecC
Confidence            3445554  489999999999999999975 55789999853

>3khq_A B-cell antigen receptor complex-associated protei chain; CD79B, CD79A, IG-beta, BCR, IG domain, V-SET, immunoglobulin protein binding; HET: FLC GSH; 1.70A {Mus musculus} PDB: 3kho_A*

Probab=98.49  E-value=8.4e-08  Score=57.23  Aligned_cols=40  Identities=18%  Similarity=0.145  Sum_probs=29.2

Q ss_pred             EEEEcccCCCCCeeeEEEeEeCCCc---ccceeEEEEEEeCCC
Q psy7035          22 SLVLQNVSRARAGHYTCVGSNGEGD---GQSNAQKTAYDIGLG   61 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N~~G~---~~s~~~~L~V~~~p~   61 (70)
                      +|+|.+++.+|+|.|.|.|.|..|.   ..+....|.|...|.
T Consensus        78 ~L~I~~~~~~DsG~Y~C~a~n~~g~~~~~~g~gt~L~V~~~p~  120 (133)
T 3khq_A           78 TLTIQNIQYEDNGIYFCKQKCDSANHNVTDSCGTELLVLGFST  120 (133)
T ss_dssp             EEEECSCCGGGCEEEEEEESSCC-------CCCEEEEEC----
T ss_pred             EEEECCCChHHCEEEEEEEEeCCCCcceeECCCEEEEEEeccc
Confidence            6999999999999999999998763   235568899985443

>2q87_A CMRF35-H antigen; all-beta, immunoglobulin, IG-superfamily, IG-V, NKP44-like, natural killer cell IG-like receptor, inhibitory receptor; 1.70A {Homo sapiens}

Probab=98.49  E-value=2.2e-07  Score=52.80  Aligned_cols=39  Identities=18%  Similarity=0.201  Sum_probs=28.8

Q ss_pred             EEEEcccCCCCCeeeEEEeEeCC-CcccceeEEEEEEeCC
Q psy7035          22 SLVLQNVSRARAGHYTCVGSNGE-GDGQSNAQKTAYDIGL   60 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N~~-G~~~s~~~~L~V~~~p   60 (70)
                      +|+|.+++.+|+|.|.|.+.+.. |......+.|.|...|
T Consensus        69 ~L~I~~~~~~DsG~Y~C~~~~~~~g~~~~~~~~v~v~V~p  108 (110)
T 2q87_A           69 TVTLENLTEEDAGTYWCGVDTPWLQDFHDPVVEVEVSVFP  108 (110)
T ss_dssp             EEEESSCCGGGCEEEEEEEECTTSCCBCCCSEEEEEEEC-
T ss_pred             EEEEccCCHHHCEEEEEEEecCccCccCCccEEEEEEEec
Confidence            89999999999999999999986 6222334555555444

>3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B* 1h3p_L

Probab=98.49  E-value=2.6e-07  Score=58.44  Aligned_cols=37  Identities=16%  Similarity=0.150  Sum_probs=31.3

Q ss_pred             EEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEe
Q psy7035          22 SLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDI   58 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~   58 (70)
                      +|+|.+++.+|+|.|+|.|.|..+...+....|.|..
T Consensus       110 ~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~  146 (252)
T 3bkj_L          110 TLRISRVEAEDLGVYYCFQASLVPLTFGAGTKLELKR  146 (252)
T ss_dssp             EEEESSCCGGGCEEEEEEECSBSSCEECCCEEEEECC
T ss_pred             EEEECCCCcccCEEEEEEEEcCCccEECCCEEEEEeC
Confidence            8999999999999999999998775555567788863

>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus}

Probab=98.49  E-value=2.7e-07  Score=58.09  Aligned_cols=36  Identities=19%  Similarity=0.241  Sum_probs=31.2

Q ss_pred             EEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEE
Q psy7035          22 SLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYD   57 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~   57 (70)
                      +|+|.+++.+|+|.|+|.|.|..+...+....|.|.
T Consensus       114 ~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~l~V~  149 (254)
T 2c1o_A          114 TLKISRVEAEDLGIYYCVQGSHFPPTFGAGTKLELK  149 (254)
T ss_dssp             EEEESSCCGGGCSEEEEEECSSSSCEEBCCEEEEEC
T ss_pred             EEEECcCCcccCEEEEEEEEcCcceEecCCEEEEEC
Confidence            899999999999999999999877655556678886

>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=98.49  E-value=2.1e-07  Score=60.70  Aligned_cols=41  Identities=20%  Similarity=0.224  Sum_probs=33.7

Q ss_pred             cCCEEEEcccCCCCCeeeEEEeEeCC----CcccceeEEEEEEeC
Q psy7035          19 SNQSLVLQNVSRARAGHYTCVGSNGE----GDGQSNAQKTAYDIG   59 (70)
Q Consensus        19 ~~~tL~i~~v~~~D~G~Y~C~a~N~~----G~~~s~~~~L~V~~~   59 (70)
                      .+++|.|.+++++|+|.|+|.|.|..    ....|.++.|.|...
T Consensus        60 ~~~~L~I~~v~~~DsG~Y~C~a~~~~~~~~~s~~S~~~~L~V~~~  104 (257)
T 1b6u_A           60 SKANFSIGPMMQDLAGTYRCYGSVTHSPYQLSAPSDPLDIVITGL  104 (257)
T ss_dssp             EEEEEEECSCCTTTCEEEEEEEECSSCTTSCCCCCCCEEEEEECS
T ss_pred             ceEEEEeecCCcccCEEEEEeEeccCCCccccccCCCEEEecccC
Confidence            45689999999999999999998753    345678899999854

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3

Probab=98.48  E-value=4.7e-08  Score=59.73  Aligned_cols=28  Identities=7%  Similarity=0.061  Sum_probs=24.3

Q ss_pred             EEEcccCCCCCeeeEEEeEeCCCcccce
Q psy7035          23 LVLQNVSRARAGHYTCVGSNGEGDGQSN   50 (70)
Q Consensus        23 L~i~~v~~~D~G~Y~C~a~N~~G~~~s~   50 (70)
                      +.|.+++++|+|.|+|.|.|..|...+.
T Consensus       142 ~~i~~~~~~d~G~Y~C~a~N~~g~~~~~  169 (176)
T 1hng_A          142 KTMSYQWTNLRAPFKCKAVNRVSQESEM  169 (176)
T ss_dssp             SEEEEECSCCSSCEEEEEEETTEEEEEE
T ss_pred             EEEEEEEccCCeEEEEEEEecCCCceec
Confidence            5677899999999999999999986553

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4

Probab=98.48  E-value=6.5e-08  Score=65.30  Aligned_cols=44  Identities=9%  Similarity=0.196  Sum_probs=35.9

Q ss_pred             CEEEEcccCCCCCeeeEEEeEeCCC-cc--cceeEEEEEEeCCCCCC
Q psy7035          21 QSLVLQNVSRARAGHYTCVGSNGEG-DG--QSNAQKTAYDIGLGIPA   64 (70)
Q Consensus        21 ~tL~i~~v~~~D~G~Y~C~a~N~~G-~~--~s~~~~L~V~~~p~~~~   64 (70)
                      .+|.|.+++.+|+|.|+|.|.|..| ..  .+..+.|.|.++|....
T Consensus       327 ~~L~i~~~~~~d~G~Y~C~a~n~~~g~~~~~~~~~~l~V~~~P~~~~  373 (450)
T 1z7z_I          327 AQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDE  373 (450)
T ss_dssp             CCEEEECCGGGTTCEEEEEEEEEETTEEEEEEEEEECEEEEEEECCS
T ss_pred             EEEEEecCcccCCceEEEEEEcCCCCcccccceeEEEEEecCCceee
Confidence            4899999999999999999998654 42  24678999999886543

>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A*

Probab=98.48  E-value=1.6e-07  Score=58.98  Aligned_cols=40  Identities=18%  Similarity=0.156  Sum_probs=33.8

Q ss_pred             CEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeCCC
Q psy7035          21 QSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGLG   61 (70)
Q Consensus        21 ~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~p~   61 (70)
                      .+|.|.+++.+|+|.|+|.+.|..|.. +..+.|.|...|.
T Consensus        82 ~sL~I~~v~~~D~G~Y~C~~~~~~~~~-~~~~~L~V~~~P~  121 (248)
T 3pv7_A           82 ASLRLPGIQLEEAGEYRCEVVVTPLKA-QGTVQLEVVASPA  121 (248)
T ss_dssp             CCEEESSCCGGGCEEEEEEEEETTEEE-EEEEEEEEEBCCE
T ss_pred             EEEEeCCCCHHHCeEEEEEEEeCCccc-eeEEEEEEecCCc
Confidence            469999999999999999999987753 4578899986554

>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI domain, IG-like domain, extracellular receptor, neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4 b.69.12.1 g.16.2.1 PDB: 3ol2_A*

Probab=98.48  E-value=1.2e-07  Score=69.86  Aligned_cols=65  Identities=15%  Similarity=0.192  Sum_probs=42.4

Q ss_pred             cccCeEcCcCccceEEecCCEEEEcccCCCCCeeeEEEeEeCCCc---c-cceeEEEEEEeCCCCCCCC
Q psy7035           2 SFSNVQLYNNISAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGD---G-QSNAQKTAYDIGLGIPAEP   66 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~---~-~s~~~~L~V~~~p~~~~~p   66 (70)
                      ++||.++.......++..++.|.|.+++++|+|.|+|.|.|..+.   . ....+.|+|..+|.....|
T Consensus       567 ~~~~~~l~~~~~~~~~~~~~~LlI~~v~~~DsG~Y~C~A~e~~~~~~~~~~~~~~~l~V~v~P~~~~~p  635 (663)
T 1olz_A          567 KFQNGVLKAESPKYGLMGRKNLLIFNLSEGDSGVYQCLSEERVKNKTVFQVVAKHVLEVKVVPKPVVAP  635 (663)
T ss_dssp             EESSSBCCCCSSSBCCTTTTCEEECSCCGGGCEEEEEEEEEECSSSEEEEEEEEEEEEEEC--------
T ss_pred             EECCeeccccCcceEEecCCeEEEEecCcccCeEEEEEEEECccCCCceEEEEEEEEEEEeCCccCCCC
Confidence            467777654433333446789999999999999999999998422   2 2457899999888765554

>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1

Probab=98.47  E-value=2.9e-07  Score=61.67  Aligned_cols=37  Identities=19%  Similarity=0.182  Sum_probs=32.7

Q ss_pred             CEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEE
Q psy7035          21 QSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYD   57 (70)
Q Consensus        21 ~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~   57 (70)
                      .+|.|.+++.+|+|.|+|.|.|..|...+..+.|.|.
T Consensus        75 ~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~l~V~  111 (438)
T 1qgc_4           75 FTLTIDPVEADDVATYYCQQSNEVPLTFGAGTKLDLK  111 (438)
T ss_dssp             EEEEESSCCGGGCEEEEEEECSSTTCCBCCCEEEEEC
T ss_pred             EEEEeCCCcCcCCeeEEEEEecCCCccccCceeEEec
Confidence            3899999999999999999999988766667888885

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A

Probab=98.47  E-value=1.6e-07  Score=58.37  Aligned_cols=38  Identities=18%  Similarity=0.366  Sum_probs=29.1

Q ss_pred             CCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeCC
Q psy7035          20 NQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGL   60 (70)
Q Consensus        20 ~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~p   60 (70)
                      +.+|.|.+++.+|+|.|+|.|.|..|...   ..+.+...+
T Consensus        82 ~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~---~~v~~~~~~  119 (226)
T 4f80_A           82 KAALRIHNVTASDSGKYLCYFQDGDFYEK---ALVELKVAA  119 (226)
T ss_dssp             EEEEEESSCCGGGCEEEEEEEEETTEEEE---EEEEEEEEB
T ss_pred             eEEEEEeeCchHHCeeEEEEEECCCcEEE---EEEEEeecc
Confidence            34899999999999999999999877543   344444333

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.47  E-value=1.3e-08  Score=67.49  Aligned_cols=44  Identities=18%  Similarity=0.212  Sum_probs=37.1

Q ss_pred             EecCCEEEEcccCCCCCe-eeEEEeEeCCCcccceeEEEEEEeCCC
Q psy7035          17 IVSNQSLVLQNVSRARAG-HYTCVGSNGEGDGQSNAQKTAYDIGLG   61 (70)
Q Consensus        17 ~~~~~tL~i~~v~~~D~G-~Y~C~a~N~~G~~~s~~~~L~V~~~p~   61 (70)
                      ...+++|.|.+++.+|+| .|+|.|.|..|.. +..+.|.|.++|.
T Consensus       208 ~~~~~~L~i~~v~~~D~G~~Y~C~a~n~~g~~-~~~~~l~V~~~P~  252 (347)
T 2ifg_A          208 GLPSLGLTLANVTSDLNRKNVTCWAENDVGRA-EVSVQVNVSFPAS  252 (347)
T ss_dssp             CSSEEEEEEESCCSTTTTCCEEECCEETTEEC-CEEECCCCBEEEE
T ss_pred             ecccceEEEeeCChHHCCCeEEEEEEcCCCCE-EEEEEEEEcCCCe
Confidence            345679999999999999 9999999999876 5578888876665

>2pkd_A SLAM family member 5; signaling lymphocyte activation molecule, IGV, immunoglobulin variable, IGC, immunoglobulin constant, signaling protein; 2.04A {Homo sapiens}

Probab=98.45  E-value=3e-07  Score=53.57  Aligned_cols=39  Identities=15%  Similarity=0.177  Sum_probs=32.5

Q ss_pred             cCCEEEEcccCCCCCeeeEEEeEeCCCc-ccceeEEEEEE
Q psy7035          19 SNQSLVLQNVSRARAGHYTCVGSNGEGD-GQSNAQKTAYD   57 (70)
Q Consensus        19 ~~~tL~i~~v~~~D~G~Y~C~a~N~~G~-~~s~~~~L~V~   57 (70)
                      .+++|+|.+++.+|+|.|.|......+. .....+.|.|+
T Consensus        70 ~~~SL~I~nl~~~DsG~Y~c~i~~~~~~~~~~~~~~L~V~  109 (111)
T 2pkd_A           70 PNYNLVISDLRMEDAGDYKADINTQADPYTTTKRYNLQIY  109 (111)
T ss_dssp             TTCCEEECSCCGGGCEEEEEEEEESSTTSEEEEEEEEEEE
T ss_pred             CCEEEEECCCCHHHCEEEEEEEEeCCCCceEEEEEEEEEE
Confidence            3689999999999999999999877654 34567888886

>2d9c_A Signal-regulatory protein beta-1; beta-sandwich, SIRP-beta-1, CD172B antigen, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.44  E-value=5.1e-07  Score=53.09  Aligned_cols=41  Identities=20%  Similarity=0.286  Sum_probs=31.8

Q ss_pred             CCEEEEcccCCCCCeeeEEEeEeCCCc-----ccceeEEEEEEeCC
Q psy7035          20 NQSLVLQNVSRARAGHYTCVGSNGEGD-----GQSNAQKTAYDIGL   60 (70)
Q Consensus        20 ~~tL~i~~v~~~D~G~Y~C~a~N~~G~-----~~s~~~~L~V~~~p   60 (70)
                      +.+|+|.+++.+|+|.|.|.+.|..+.     .....+.|.|...|
T Consensus        78 ~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~g~~t~L~V~~~~  123 (136)
T 2d9c_A           78 DFSISISNITPADAGTYYCVKFRKGSPDDVEFKSGAGTELSVRAKP  123 (136)
T ss_dssp             BCCEEESSCCTTTCEEEEEEEEECCSSSCEEEEECCCEEEEEECCC
T ss_pred             EEEEEECCCCHHHCEEEEEEEEeCCCCcccceeeCCCeEEEEEeCC
Confidence            358999999999999999999986431     11246889998555

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A*

Probab=98.44  E-value=2.9e-07  Score=58.00  Aligned_cols=38  Identities=26%  Similarity=0.256  Sum_probs=31.2

Q ss_pred             CCEEEEcccCCCCCeeeEEEeEeCCCcc-cceeEEEEEE
Q psy7035          20 NQSLVLQNVSRARAGHYTCVGSNGEGDG-QSNAQKTAYD   57 (70)
Q Consensus        20 ~~tL~i~~v~~~D~G~Y~C~a~N~~G~~-~s~~~~L~V~   57 (70)
                      +++|.|.+++.+|+|.|+|.|.|..+.. .+..+.|.|.
T Consensus        83 ~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~  121 (268)
T 3mj6_A           83 DGSLLLQDVQKADEGIYTCEIRLKNESMVMKKPVELWVL  121 (268)
T ss_dssp             BCCEEECSCCGGGCEEEEEEEEETTCCCEEEEEEEEEEE
T ss_pred             EEEEEECCCCHhHCEEEEEEEEecCCcceEEEEEEEEEe
Confidence            3789999999999999999999986544 4556777775

>2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A*

Probab=98.43  E-value=1.1e-07  Score=60.12  Aligned_cols=40  Identities=23%  Similarity=0.218  Sum_probs=31.7

Q ss_pred             CEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeCC
Q psy7035          21 QSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGL   60 (70)
Q Consensus        21 ~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~p   60 (70)
                      .+|+|.+++.+|+|.|.|.|.|..+...+..+.|.|...|
T Consensus        71 ~~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~~L~V~~~~  110 (242)
T 2znx_A           71 FTLSINSVETEDFGMYFCQQSNSXPYTFGGGTKLEITGGG  110 (242)
T ss_dssp             EEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEC---
T ss_pred             EEEEECCCChHHCEEEEEeEecCCceEECCCEEEEEcCCC
Confidence            3899999999999999999999866545566788888655

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=98.43  E-value=1.7e-07  Score=56.23  Aligned_cols=55  Identities=16%  Similarity=0.156  Sum_probs=36.8

Q ss_pred             cccCeEcCcCccceEEecCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeCCCCCCC
Q psy7035           2 SFSNVQLYNNISAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGLGIPAE   65 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~p~~~~~   65 (70)
                      ++||+++.......   .+..|.|.  +.+|+|.|+|.|.|.    .+..+.|.|.+.|.....
T Consensus        35 ~k~~~~l~~~~~~~---~~~~l~i~--~~~d~G~Y~C~~~n~----~~~~~~l~V~~~P~~~~~   89 (184)
T 3b5h_A           35 LKGGVVLKEDALPG---QKTEFKVD--SDDQWGEYSCVFLPE----PMGTANIQLHGPPRVKAV   89 (184)
T ss_dssp             ESSSEEEECTTCCC---SEEEEEEC--GGGCCEEEEEEEEST----TSCEEEEEECCSCCCEES
T ss_pred             EeCCEEeecccccC---CcEEEEEe--chhhCeEEEEEEECC----cCcEEEEEEecCCceeec
Confidence            46676665432111   12356666  689999999999992    346789999988865333

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J

Probab=98.43  E-value=6.2e-07  Score=62.27  Aligned_cols=46  Identities=26%  Similarity=0.428  Sum_probs=37.4

Q ss_pred             CC--EEEEcccCCCCCeeeEEEeEeCCCcccc----eeEEEEEEeCCCCCCCC
Q psy7035          20 NQ--SLVLQNVSRARAGHYTCVGSNGEGDGQS----NAQKTAYDIGLGIPAEP   66 (70)
Q Consensus        20 ~~--tL~i~~v~~~D~G~Y~C~a~N~~G~~~s----~~~~L~V~~~p~~~~~p   66 (70)
                      ++  +|.|.+++.+|+|.|+|.|.|. |....    ..+.|.|.+.|..+..|
T Consensus       287 ~g~~~L~i~~v~~~d~G~Y~C~a~n~-g~~~~~~~~~~~~l~V~~~p~~~~~~  338 (585)
T 2ocw_A          287 DGSFSVVITGLRKEDAGRYLCGAHSD-GQLQEGSPIQAWQLFVNEESTIPRSP  338 (585)
T ss_pred             CcEEEEEEccCChhhCEEEEEEEEcC-CCccccCceeeEEEEEecccccccCC
Confidence            55  7999999999999999999995 54442    67899999887765544

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4

Probab=98.43  E-value=6.5e-08  Score=65.28  Aligned_cols=57  Identities=7%  Similarity=-0.017  Sum_probs=39.8

Q ss_pred             cccCeEcCcCccceEEecCCEEEEcccCCCCCeeeEEEeEeCCCccc-------ceeEEEEEEeC
Q psy7035           2 SFSNVQLYNNISAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQ-------SNAQKTAYDIG   59 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~-------s~~~~L~V~~~   59 (70)
                      +|||+++....... ...+++|+|.+++.+|+|.|+|.|.|..|...       +.+..|.|.+.
T Consensus       124 ~k~g~~l~~~~~~~-~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~~~s~~~~l~v~~~  187 (450)
T 1z7z_I          124 LRGEKELKREPAVG-EPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVL  187 (450)
T ss_dssp             EETTEEEEEEECCT-TTEEEEEEEECCSSCSSCEEEEEEEEECGGGTSCEEEEECCCEECEECCC
T ss_pred             eeCCEEeecccccc-cccceEEEEEeeccccCceEEEEEEcccCCCCceEEeeccCccceeeecc
Confidence            56777775432111 11235999999999999999999999988533       35667777644

>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein, immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 1p9m_C 2arw_A

Probab=98.42  E-value=4.6e-07  Score=59.85  Aligned_cols=45  Identities=20%  Similarity=0.326  Sum_probs=36.3

Q ss_pred             EEecCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeCCCCCC
Q psy7035          16 VIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGLGIPA   64 (70)
Q Consensus        16 ~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~p~~~~   64 (70)
                      ....+++|.|.++++.|+|.|+|.+   .|.. ...+.|.|.++|+.|.
T Consensus        55 ~~~~~~~L~i~~v~~~d~G~Y~C~~---~g~~-~~~~~L~V~~pP~~P~   99 (325)
T 1n26_A           55 WAGMGRRLLLRSVQLHDSGNYSCYR---AGRP-AGTVHLLVDVPPEEPQ   99 (325)
T ss_dssp             EEEESSEEEECSCCGGGCEEEEEES---SSSC-SCEEEEEECCCCCCCC
T ss_pred             cccccceEEecccchhhCeEeEEEe---CCEE-eeeEEEEeccCCCCCc
Confidence            3456789999999999999999994   5654 4468999998777655

>1xau_A B- and T-lymphocyte attenuator; IG domain, beta sandwich, structural genomics, PSI, protein structure initiative; 1.80A {Mus musculus} SCOP: b.1.1.4

Probab=98.42  E-value=2.2e-07  Score=56.07  Aligned_cols=36  Identities=14%  Similarity=0.195  Sum_probs=34.1

Q ss_pred             EEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEE
Q psy7035          22 SLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYD   57 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~   57 (70)
                      .|.|.+|..+|+|.|.|.|.|..|..+|..++|.|.
T Consensus        80 iL~f~~V~~sDsG~YrCsAn~~~g~ieSHs~ti~V~  115 (122)
T 1xau_A           80 VLHFKPIHLSDNGSYSCSTNFNSQVINSHSVTIHVR  115 (122)
T ss_dssp             EEEETTCCGGGCEEEEEEEEETTEEEECCCEEEEEC
T ss_pred             EEEEeeEEEcCCccEEEEeeCCCCceeeeEEEEEEE
Confidence            799999999999999999999999999999998886

>3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex, immunoglobulin fold, immune receptor, membr immune system; HET: NAG; 2.55A {Homo sapiens}

Probab=98.41  E-value=2.4e-07  Score=58.97  Aligned_cols=47  Identities=17%  Similarity=0.145  Sum_probs=33.5

Q ss_pred             CCEEEEcccCCCCCeeeEEEeEeC-CCcccceeEEEEEEeCCCCCCCC
Q psy7035          20 NQSLVLQNVSRARAGHYTCVGSNG-EGDGQSNAQKTAYDIGLGIPAEP   66 (70)
Q Consensus        20 ~~tL~i~~v~~~D~G~Y~C~a~N~-~G~~~s~~~~L~V~~~p~~~~~p   66 (70)
                      +.+|+|.+++.+|+|.|+|.+.|. .....+....|.|...+..+.+|
T Consensus        99 ~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~~~P  146 (268)
T 3pl6_D           99 VSTLKIQRTERGDSAVYLCATSALGDTQYFGPGTRLTVLEDLKNVFPP  146 (268)
T ss_dssp             SEEEEECSCCGGGCEEEEEEEESSSSSCEECCCEEEEEESCGGGCBCC
T ss_pred             EEEEEECCCCcccCEEEEEEEecCCCceeeCCcEEEEEecCcccccCC
Confidence            458999999999999999999985 22233445678887533333333

>3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A*

Probab=98.41  E-value=3.8e-07  Score=57.30  Aligned_cols=38  Identities=24%  Similarity=0.287  Sum_probs=32.4

Q ss_pred             EEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeC
Q psy7035          22 SLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIG   59 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~   59 (70)
                      +|+|.+++.+|+|.|+|.|.|..+...+....|.|..+
T Consensus        75 ~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~  112 (250)
T 3esu_F           75 SLTISNLEQEDIGTYFCQQGNTLPWTFGGGTKLEIRRG  112 (250)
T ss_dssp             EEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEC--
T ss_pred             EEEEccCChhhCEEEEEEEeeCCCceECCCEEEEEECC
Confidence            79999999999999999999988776666778888764

>1jhl_L IGG1-kappa D11.15 FV (light chain); complex(antibody-antigen); 2.40A {Mus musculus} SCOP: b.1.1.1

Probab=98.41  E-value=3.1e-07  Score=52.02  Aligned_cols=37  Identities=14%  Similarity=0.122  Sum_probs=28.3

Q ss_pred             CEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEE
Q psy7035          21 QSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYD   57 (70)
Q Consensus        21 ~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~   57 (70)
                      .+|+|.+++.+|+|.|.|.|.|........-..|.|.
T Consensus        71 ~~L~I~~v~~~DsG~Y~C~~~n~~~~~fg~gt~L~V~  107 (108)
T 1jhl_L           71 FTLTISSLEPEDFAMYICQQHNEYPWTFGGGTKLEIK  107 (108)
T ss_dssp             EEEEECSCCTTCCSEEEEEECSSSSCEECCCEEEEEC
T ss_pred             EEEEECCCCHHHCEEEEEEEccCCccEECCCEEEEEE
Confidence            3799999999999999999999743333344566663

>3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus musculus}

Probab=98.40  E-value=8.1e-08  Score=59.72  Aligned_cols=37  Identities=11%  Similarity=0.179  Sum_probs=23.8

Q ss_pred             EEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEe
Q psy7035          22 SLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDI   58 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~   58 (70)
                      +|.|.+++.+|+|.|+|.|.|..+...+....|.|..
T Consensus        94 ~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~  130 (233)
T 3bqu_C           94 VFTIENMLSEDVADYYCLQSDNLPYTFGGGTNLEIKR  130 (233)
T ss_dssp             EEC-----CCCCSEEEEEECSSSSCCBCCCCBC---C
T ss_pred             EEEECCCCHHHCEEEEEEEecCCceeecCCEEEEEeC
Confidence            8999999999999999999998775555556677763

>2d9q_B Granulocyte colony-stimulating factor receptor; cytokine, ligand-receptor complex, signaling protein-cytokin; HET: NAG; 2.80A {Homo sapiens} SCOP: b.1.1.3 b.1.2.1 b.1.2.1

Probab=98.40  E-value=1.5e-07  Score=61.59  Aligned_cols=60  Identities=7%  Similarity=-0.020  Sum_probs=39.5

Q ss_pred             cccCeEcCcCccceEEecC---CEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeCCCCC
Q psy7035           2 SFSNVQLYNNISAGVIVSN---QSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGLGIP   63 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~~~~---~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~p~~~   63 (70)
                      ++||+.|..+ +...+..+   ++|+|.++++.|+|.|+|.|.|..+. .+..+.|.|.+.|+.|
T Consensus        40 ~~~g~~l~~~-~~~~~~~~~~~~~L~i~~~~~~d~g~y~c~~~~~~~~-~~~~~~l~v~~~P~~P  102 (313)
T 2d9q_B           40 RLGAELQPGG-RQQRLSDGTQESIITLPHLNHTQAFLSCSLNWGNSLQ-ILDQVELRAGYPPAIP  102 (313)
T ss_dssp             ESSSCBCTTC-EECCCSSSCCCEEEEESCCCSSEEEEEEEEESSSSEE-EEEEEEEEECCCCCCC
T ss_pred             EeCCEECCcc-ceEEEecCeEEEEEEEeccCCCccceEEeeecCCCce-eEEEEEEccCCCCCCC
Confidence            3677776432 22222222   56999999999999999999765443 2445778887655543

>1oaq_L Light chain; antibody, allergy, IGE, conformational diversity, multispecificity; 1.50A {Rattus rattus} SCOP: b.1.1.1 PDB: 1ocw_L 2bjm_L* 1oau_L* 1oar_L* 1oaz_L 1mfa_L* 1a6v_L* 1oax_L* 1oay_L* 1a6w_L* 1a6u_L 1dl7_L*

Probab=98.39  E-value=2.5e-07  Score=53.61  Aligned_cols=39  Identities=10%  Similarity=-0.037  Sum_probs=30.0

Q ss_pred             EEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeCC
Q psy7035          22 SLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGL   60 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~p   60 (70)
                      +|+|.+++.+|+|.|.|.+.+...........|.|...|
T Consensus        74 ~L~I~~~~~~DsG~Y~C~~~~~~~~~fg~gt~L~V~~~~  112 (120)
T 1oaq_L           74 ALTITGAQTEDEAIYFCALWYSNHLVFGGGTKLTVLGQP  112 (120)
T ss_dssp             EEEEESCCGGGCEEEEEEEEETTEEEECCCEEEEECC--
T ss_pred             EEEECCCChhhCeEEEEEEccCCCcEECCCEEEEEcCCC
Confidence            799999999999999999998744333445688887544

>4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R

Probab=98.38  E-value=2.2e-07  Score=60.16  Aligned_cols=42  Identities=19%  Similarity=0.088  Sum_probs=33.7

Q ss_pred             CCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeCCC
Q psy7035          20 NQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGLG   61 (70)
Q Consensus        20 ~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~p~   61 (70)
                      +.+|+|.+++.+|+|.|+|.|.+..+...+..+.|.|...|.
T Consensus        78 ~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~~~~l~v~~~P~  119 (313)
T 4fqp_A           78 NASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKPQ  119 (313)
T ss_dssp             BCCEEECSCCGGGCEEEEEEEECSSSCEEEEEEEECCBBCCE
T ss_pred             ceEEEECcCChhhCEEEEEEEeeccCcceeeeeeeeeccCCc
Confidence            468999999999999999998765554556678888876664

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*

Probab=98.38  E-value=2e-07  Score=58.21  Aligned_cols=47  Identities=17%  Similarity=0.206  Sum_probs=33.6

Q ss_pred             cccCeEcCcCccceEEecCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEE
Q psy7035           2 SFSNVQLYNNISAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYD   57 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~   57 (70)
                      +|||.++...     ...+++|.|.+++++|+|.|+|.|.|.    .+.++.|.|.
T Consensus        35 ~k~g~~l~~~-----~~~~~~L~i~~v~~~DsG~Y~C~~~~~----~s~~~~v~v~   81 (204)
T 1sy6_A           35 FKDGKMIGFL-----TEDKKKWNLGSNAKDPRGMYQCKGSQN----KSKPLQVYYR   81 (204)
T ss_dssp             EETTEEEEEE-----ESSCCCEEEEEGGGCCEEEEEEESSSS----CCCCEEEEEE
T ss_pred             EECCEECCCC-----CCCCCeEEeCCCCcCCCEEEEEEecCC----CCeeEEEEEE
Confidence            4677776432     124679999999999999999998663    2344666665

>1xt5_A Variable region-containing chitin-binding protein 3; innate immunity, VCBP, primordial antigen receptor, florida lancelet, amphioxus; 1.15A {Branchiostoma floridae}

Probab=98.38  E-value=6.5e-07  Score=51.86  Aligned_cols=38  Identities=16%  Similarity=0.166  Sum_probs=30.2

Q ss_pred             CCEEEEcccCCCCCeeeEEEeEeCCCcc----cceeEEEEEE
Q psy7035          20 NQSLVLQNVSRARAGHYTCVGSNGEGDG----QSNAQKTAYD   57 (70)
Q Consensus        20 ~~tL~i~~v~~~D~G~Y~C~a~N~~G~~----~s~~~~L~V~   57 (70)
                      +.+|+|.+++.+|+|.|.|.+.|..+..    .+..+.|.|.
T Consensus        91 ~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~g~~~~~~~L~V~  132 (135)
T 1xt5_A           91 APTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVT  132 (135)
T ss_dssp             SCCEEECSCCGGGCEEEEEEEECSSCCSGGGEEEEEEEEEEE
T ss_pred             CCeEEECCCChhhCcEEEEEEEcCCccccccccceeEEEEEe
Confidence            3689999999999999999999964422    2356778775

>2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid factor IGG1-FC, immunoglobulin C region, membrane, glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=98.37  E-value=1.3e-07  Score=58.69  Aligned_cols=38  Identities=13%  Similarity=0.063  Sum_probs=30.4

Q ss_pred             CEEEEcccCCCCCeeeEEEeEeCCC--cccceeEEEEEEe
Q psy7035          21 QSLVLQNVSRARAGHYTCVGSNGEG--DGQSNAQKTAYDI   58 (70)
Q Consensus        21 ~tL~i~~v~~~D~G~Y~C~a~N~~G--~~~s~~~~L~V~~   58 (70)
                      .+|+|.+++.+|+|.|+|.|.|..+  ...+..+.|.|..
T Consensus        91 ~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~  130 (234)
T 2j6e_L           91 ASLAISGLRSEDEADYYCATWDDSLSAVIFGGGTKLTVLG  130 (234)
T ss_dssp             EEEEEESCCSTTCSEEEEEEEETTTTEEEECCCBCCCBCC
T ss_pred             EEEEECCCCHHHCEEEEEEEEcCCcceeEecCCEEEEEec
Confidence            3899999999999999999999987  2334456677753

>1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen complex, HIV inhibiting antibody; 1.89A {Mus musculus} PDB: 1jp5_A

Probab=98.37  E-value=2.5e-07  Score=58.13  Aligned_cols=39  Identities=18%  Similarity=0.175  Sum_probs=31.3

Q ss_pred             EEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeCC
Q psy7035          22 SLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGL   60 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~p   60 (70)
                      +|+|.+++.+|+|.|+|.|.|..+...+..+.|.|..++
T Consensus        77 ~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~  115 (247)
T 1svz_A           77 TLKISRVEAEDLGIYYCFQGSHFPPTFGGGTKLEIKGGG  115 (247)
T ss_dssp             EEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEC---
T ss_pred             EEEECCCCHHHCEEEEEEEccCCccEECCCEEEEEECCc
Confidence            899999999999999999999876545556788887653

>4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain, human constant...; natural killer T cell receptor, immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B 4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B 3qjh_B 3qiw_D* 3qiu_D

Probab=98.37  E-value=9.7e-07  Score=55.25  Aligned_cols=37  Identities=14%  Similarity=0.047  Sum_probs=29.4

Q ss_pred             EEEEcccCCCCCeeeEEEeEeCC---CcccceeEEEEEEe
Q psy7035          22 SLVLQNVSRARAGHYTCVGSNGE---GDGQSNAQKTAYDI   58 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N~~---G~~~s~~~~L~V~~   58 (70)
                      +|.|.+++.+|+|.|.|.+.|..   ....+....|.|..
T Consensus        77 sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~  116 (245)
T 4ei6_B           77 TLKIQPTALEDSAVYFCASSFWGAYAEQFFGPGTRLTVLE  116 (245)
T ss_dssp             EEEECSCCGGGCEEEEEEEECSSTTCCCEECCCEEEEEES
T ss_pred             EEEECCCCHhHCEEEEEEEccCCCcceEEEcCCcEEEEec
Confidence            89999999999999999999632   23344567888874

>1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H

Probab=98.37  E-value=1.4e-07  Score=60.37  Aligned_cols=41  Identities=10%  Similarity=0.158  Sum_probs=32.4

Q ss_pred             CEEEEcccCCCCCeeeEEEeEeCCCc----ccceeEEEEEEeCCC
Q psy7035          21 QSLVLQNVSRARAGHYTCVGSNGEGD----GQSNAQKTAYDIGLG   61 (70)
Q Consensus        21 ~tL~i~~v~~~D~G~Y~C~a~N~~G~----~~s~~~~L~V~~~p~   61 (70)
                      .+|+|.+++.+|+|.|+|.|.|..|.    ..+..+.|.|...|.
T Consensus        79 ~~L~I~~v~~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~~~  123 (256)
T 1nqb_A           79 AYMQLSSLTSEDSAVYYCARYDYYGSSYFDYWGQGTTVTVSSDIE  123 (256)
T ss_dssp             EEEEECSCCGGGCEEEEEEECCTTSSSSCSEECCCEEEEECCCCC
T ss_pred             EEEEECcCChhhCEEEEEEEeeccCccceeEEcCceeeeeccccc
Confidence            48999999999999999999998773    223457788875553

>4esk_A LAIR-1, mlair1, leukocyte-associated immunoglobulin-like receptor; IG-like domain, domain swapping, collagen receptor, structural genomics; 1.76A {Mus musculus}

Probab=98.37  E-value=1.7e-07  Score=54.17  Aligned_cols=38  Identities=21%  Similarity=0.375  Sum_probs=33.6

Q ss_pred             CCEEEEcccCCCCCeeeEEEeEeCCC-cccceeEEEEEE
Q psy7035          20 NQSLVLQNVSRARAGHYTCVGSNGEG-DGQSNAQKTAYD   57 (70)
Q Consensus        20 ~~tL~i~~v~~~D~G~Y~C~a~N~~G-~~~s~~~~L~V~   57 (70)
                      +..+.|.+|+++|+|.|.|...+..+ +..|+++.|.|.
T Consensus        62 ~a~f~i~~vt~~~aG~Y~C~~~~~~~~S~~Sdpl~L~Vt  100 (102)
T 4esk_A           62 EDEFEIGPVNETITGHYSCIYSKGITWSERSKTLELKVI  100 (102)
T ss_dssp             EEEEEECSCCGGGCEEEEEEEEETTTEEEECCCEEEEEE
T ss_pred             ceEEEeCcCCcccCeeEEEEEeCCCccccCcCCEEEEEE
Confidence            35799999999999999999999876 667999999986

>3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L

Probab=98.37  E-value=4.4e-07  Score=58.40  Aligned_cols=39  Identities=13%  Similarity=0.122  Sum_probs=31.1

Q ss_pred             EEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeCC
Q psy7035          22 SLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGL   60 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~p   60 (70)
                      +|+|.+++.+|+|.|+|.|.|..+...+..+.|.|...|
T Consensus        83 ~L~I~~v~~~DsG~Y~C~~~n~~~~~~~~~~~l~V~~~~  121 (276)
T 3auv_A           83 TLTISSLQPEDFATYYCQQHYTTPPTFGCGTKVEIKGGG  121 (276)
T ss_dssp             EEEESSCCGGGCEEEEEEECSSSSCCCCCCEEEEC----
T ss_pred             EEEEccCChhhCEEEEEEEecCCcccccCCEEEEEecCC
Confidence            899999999999999999999877655666788888654

>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A

Probab=98.37  E-value=3.5e-07  Score=55.88  Aligned_cols=38  Identities=11%  Similarity=0.127  Sum_probs=28.5

Q ss_pred             cCCEEEEcccCCCCCeeeEEEeEeCCCc-ccceeEEEEE
Q psy7035          19 SNQSLVLQNVSRARAGHYTCVGSNGEGD-GQSNAQKTAY   56 (70)
Q Consensus        19 ~~~tL~i~~v~~~D~G~Y~C~a~N~~G~-~~s~~~~L~V   56 (70)
                      ..++|+|..++++|.|.|+|.|.|..+. ..+..++|.|
T Consensus       175 ~~~~L~i~~~~~~~~g~Y~C~a~n~~~~~~~~~~v~l~V  213 (214)
T 2zg1_A          175 RSSELTLTPRPEDHGTNLTCQMKRQGAQVTTERTVQLNV  213 (214)
T ss_dssp             CSSEEEECCCTTCCSCEEEEEEECC----CCEEEEECCC
T ss_pred             eEEEEEEecccHHcCcEEEEEEEeCCCCcceEEEEEEEe
Confidence            5679999999999999999999998643 3444566554

>1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=98.36  E-value=2e-07  Score=60.28  Aligned_cols=47  Identities=19%  Similarity=0.160  Sum_probs=31.7

Q ss_pred             CEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeCCCCCCCCcccC
Q psy7035          21 QSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGLGIPAEPLFRS   70 (70)
Q Consensus        21 ~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~p~~~~~p~~~~   70 (70)
                      .+|+|.+++.+|+|.|+|.|.|..+...+....|.|.   +..+.+.+||
T Consensus       231 ~~L~I~~v~~~DsG~Y~C~a~~~~~~~fg~gt~l~V~---~~~~~~~~~~  277 (282)
T 1qok_A          231 YSLTISRMEAEDAATYYCQQRSSYPLTFGAGTKLELK---RAAAEQKLIS  277 (282)
T ss_dssp             EEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEC-------------
T ss_pred             EEEEEccCChhHCEEEEEEEeeCCCceEeCCEEEEEe---cccccccccc
Confidence            4799999999999999999999755555667889987   4455555553

>1h5b_A Murine T cell receptor (TCR) valpha domain; immune response, immunoglobulin fold; 1.85A {Mus musculus} SCOP: b.1.1.1 PDB: 1h5b_C 1h5b_B

Probab=98.35  E-value=1.1e-06  Score=50.16  Aligned_cols=36  Identities=14%  Similarity=0.297  Sum_probs=28.2

Q ss_pred             EEEEcccCCCCCeeeEEEeEeCCCc---ccceeEEEEEE
Q psy7035          22 SLVLQNVSRARAGHYTCVGSNGEGD---GQSNAQKTAYD   57 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N~~G~---~~s~~~~L~V~   57 (70)
                      +|+|.+++.+|+|.|.|.+.|..|.   ....-..|.|.
T Consensus        72 ~L~I~~v~~~DsG~Y~C~~~n~~~~~~~~fg~gT~L~V~  110 (113)
T 1h5b_A           72 TLHIRDAQLEDSGTYFCAAEASSGSWQLIFGSGTQLTVM  110 (113)
T ss_dssp             EEEECSCCGGGCEEEEEEEECSSSSSSCEECCCEEEEEE
T ss_pred             EEEECCCChhhCEEEEEEEecCCCCcEEEECCCcEEEEE
Confidence            8999999999999999999998762   12234566665

>3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D

Probab=98.35  E-value=2.6e-07  Score=58.60  Aligned_cols=40  Identities=13%  Similarity=0.147  Sum_probs=32.8

Q ss_pred             EEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeCCC
Q psy7035          22 SLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGLG   61 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~p~   61 (70)
                      +|+|.+++.+|+|.|+|.|.|..+...+....|.|..++.
T Consensus       209 ~L~I~~v~~~D~G~Y~C~~~~~~~~~fg~gt~L~V~~~~~  248 (256)
T 3umt_A          209 SLTISSLESEDFVDYYCLQYASSPPTFGGGTKLEIKRAAA  248 (256)
T ss_dssp             EEEECSCCGGGCSEEEEEECSSSSCEECCCEEEEEC----
T ss_pred             EEEECCCChhHCEEEEEEEeeCCCcEECCCEEEEEECCCc
Confidence            6999999999999999999998777777788999986653

>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1

Probab=98.35  E-value=2.7e-07  Score=57.90  Aligned_cols=39  Identities=10%  Similarity=0.069  Sum_probs=30.8

Q ss_pred             CEEEEcccCCCCCeeeEEEeEeCCCc-ccceeEEEEEEeC
Q psy7035          21 QSLVLQNVSRARAGHYTCVGSNGEGD-GQSNAQKTAYDIG   59 (70)
Q Consensus        21 ~tL~i~~v~~~D~G~Y~C~a~N~~G~-~~s~~~~L~V~~~   59 (70)
                      .+|+|.+++.+|+|.|+|.|.|..+. ..+..+.|.|...
T Consensus        81 ~~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~~~l~V~~~  120 (247)
T 2ghw_B           81 LYLQMNSLRAEDTAVYYCARDRSYYLDYWGQGTLVTVSSG  120 (247)
T ss_dssp             EEEEECSCCGGGCEEEEEEEEETTEEEEECCCEEEEECSC
T ss_pred             EEEEECcCCHHHCEEEEEeeeccCCccccCCceEEEEecc
Confidence            37999999999999999999998432 2234568888755

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R

Probab=98.34  E-value=6.4e-07  Score=63.72  Aligned_cols=42  Identities=24%  Similarity=0.308  Sum_probs=36.1

Q ss_pred             CCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeCCCC
Q psy7035          20 NQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGLGI   62 (70)
Q Consensus        20 ~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~p~~   62 (70)
                      ..+|.|.+++.+|+|.|+|.|.|..|.. +..+.|.|.+.|..
T Consensus       289 ~~~L~i~~v~~~d~G~Y~C~~~~~~~~~-~~~~~l~V~~~p~~  330 (772)
T 3v2a_R          289 LSTLTIDGVTRSDQGLYTCAASSGLMTK-KNSTFVRVHEKPFV  330 (772)
T ss_dssp             EEEEEESSCCSTTCSEEEEEEECSSCEE-EEEEEEEEECCCC-
T ss_pred             EEEEEECcCCcCCCeEEEEEEEcCCcce-eEEEEEEEeCCCee
Confidence            4589999999999999999999998864 66889999987754

>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens}

Probab=98.34  E-value=6.7e-07  Score=56.77  Aligned_cols=40  Identities=15%  Similarity=0.159  Sum_probs=31.9

Q ss_pred             CCEEEEcccCCCCCeeeEEEeEeCCCc--ccceeEEEEEEeC
Q psy7035          20 NQSLVLQNVSRARAGHYTCVGSNGEGD--GQSNAQKTAYDIG   59 (70)
Q Consensus        20 ~~tL~i~~v~~~D~G~Y~C~a~N~~G~--~~s~~~~L~V~~~   59 (70)
                      ..+|+|.+++.+|+|.|.|.|.|..+.  ..+....|.|...
T Consensus        78 ~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~l~V~~~  119 (259)
T 3omz_A           78 NLRMILRNLIENDSGVYYCATWDQNYYKKLFGSGTSLVVTDK  119 (259)
T ss_dssp             CCEEEESSCCGGGCEEEEEEEECTTSSCEEECCCEEEEEEC-
T ss_pred             eEEEEECCCCcccCEEEEEEEeeCCccccEECCCCEEEEecC
Confidence            347999999999999999999998762  3455677888754

>3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane, immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B* 3q5t_A

Probab=98.33  E-value=4.4e-07  Score=56.82  Aligned_cols=38  Identities=11%  Similarity=0.154  Sum_probs=29.4

Q ss_pred             CEEEEcccCCCCCeeeEEEeEe--CCCcccceeEEEEEEe
Q psy7035          21 QSLVLQNVSRARAGHYTCVGSN--GEGDGQSNAQKTAYDI   58 (70)
Q Consensus        21 ~tL~i~~v~~~D~G~Y~C~a~N--~~G~~~s~~~~L~V~~   58 (70)
                      .+|+|.+++.+|+|.|.|.+.+  ......+....|.|..
T Consensus        75 ~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~  114 (240)
T 3q5y_A           75 SEMNMSALELEDSAMYFCASSLRWGDEQYFGPGTRLTVLE  114 (240)
T ss_dssp             EEEEECSCCGGGCEEEEEEEESSTTBCCEECCCEEEEEES
T ss_pred             EEEEECcCChhHCEEEEEEEccCCCcceEEcCCEEEEEec
Confidence            4899999999999999999984  3333344557788874

>3r0n_A Poliovirus receptor-related protein 2; IG-domain, cell-adhesion molecule, virus entry receptor, STR genomics, PSI-biology; 1.30A {Homo sapiens} PDB: 4dfh_A 4dfi_A

Probab=98.33  E-value=8.7e-07  Score=51.19  Aligned_cols=34  Identities=21%  Similarity=0.322  Sum_probs=26.4

Q ss_pred             EEEEcccCCCCCeeeEEEeEe-CCCcccceeEEEEE
Q psy7035          22 SLVLQNVSRARAGHYTCVGSN-GEGDGQSNAQKTAY   56 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N-~~G~~~s~~~~L~V   56 (70)
                      +|.|.+++.+|+|.|+|.+.+ ..|.. +..+.|.|
T Consensus        94 sL~I~~v~~~D~G~Y~C~v~~~~~g~~-~~~~~L~V  128 (128)
T 3r0n_A           94 TLALHGLTVEDEGNYTCEFATFPKGSV-RGMTWLRV  128 (128)
T ss_dssp             CEEECSCCGGGCEEEEEEEEEETTEEE-EEEEEEEC
T ss_pred             EEEEccCCchhCeEEEEEEEeCCCCCc-ccEEEEEC
Confidence            899999999999999997665 45543 44566654

>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A

Probab=98.32  E-value=6.4e-07  Score=55.77  Aligned_cols=41  Identities=17%  Similarity=0.181  Sum_probs=28.7

Q ss_pred             CCEEEEcccCCCCCeeeEEEeEeCCCcc----cceeEEEEEEeCC
Q psy7035          20 NQSLVLQNVSRARAGHYTCVGSNGEGDG----QSNAQKTAYDIGL   60 (70)
Q Consensus        20 ~~tL~i~~v~~~D~G~Y~C~a~N~~G~~----~s~~~~L~V~~~p   60 (70)
                      +.+|+|.+++.+|+|.|+|.|.|..|..    .+....|.|...+
T Consensus        72 ~~~L~I~~v~~~DsG~Y~C~~~~~~g~~~~~~~~~~~~l~V~~~~  116 (238)
T 2p1y_A           72 NFSLILELATPSQTSVYFCASGDLGQTNERLFFGHGTKLSVLGSA  116 (238)
T ss_dssp             BCEEEESSCCGGGCEEEEEEEEC------CEEECCCEEEEEECCC
T ss_pred             eEEEEEecCCcccCeeEEEEEEeCCCccccceeCCCeEEEEeccC
Confidence            3489999999999999999999987632    2235678887543

>1c1e_H Catalytic antibody 1E9 (heavy chain); diels-alder, immunoglobulin, immune system; HET: ENH; 1.90A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1dbb_H* 1dba_H* 1dbj_H* 1dbk_H* 1dbm_H* 2dbl_H* 3ojd_B 1jgl_H* 1jhk_H 1ghf_H 1tet_H* 3e8u_H 1fj1_B 1cl7_H

Probab=98.32  E-value=6.5e-07  Score=55.21  Aligned_cols=38  Identities=11%  Similarity=0.096  Sum_probs=31.1

Q ss_pred             CEEEEcccCCCCCeeeEEEeEeCCCc---ccceeEEEEEEe
Q psy7035          21 QSLVLQNVSRARAGHYTCVGSNGEGD---GQSNAQKTAYDI   58 (70)
Q Consensus        21 ~tL~i~~v~~~D~G~Y~C~a~N~~G~---~~s~~~~L~V~~   58 (70)
                      .+|.|.+++.+|+|.|+|.|.|..|.   ..+..+.|.|..
T Consensus        79 ~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~  119 (219)
T 1c1e_H           79 AYLQINNLKNEDMATYFCARGTTIVRAMDYWGQGTSLTVSS  119 (219)
T ss_dssp             EEEEECSCCGGGCEEEEEEEEETTTTEEEEECCCEEEEECC
T ss_pred             EEEEECCCCcccCEEEEEEEeccCcccceeecCceEEEEec
Confidence            58999999999999999999998742   233467888875

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E

Probab=98.31  E-value=4.7e-07  Score=59.74  Aligned_cols=44  Identities=11%  Similarity=0.102  Sum_probs=34.7

Q ss_pred             EecCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeCCC
Q psy7035          17 IVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGLG   61 (70)
Q Consensus        17 ~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~p~   61 (70)
                      ...+++|.|.+++.+|+|.|+|.|.|..+. .+..+.|.|.+.|.
T Consensus       138 ~~~~~~L~i~~v~~~d~G~Y~C~a~~~~~~-~~~~~~l~v~~~p~  181 (363)
T 1wio_A          138 IQGGKTLSVSQLELQDSGTWTCTVLQNQKK-VEFKIDIVVLAFQK  181 (363)
T ss_dssp             EEESSEEEECSBCGGGCEECEEEEEETTEE-EEECCEECEECCSC
T ss_pred             cccceEEEEeeCChhcCCEEEEEEecCCCe-EEEEEEEEEecCCC
Confidence            346789999999999999999999998554 34467788875553

>1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1

Probab=98.31  E-value=5.7e-07  Score=57.24  Aligned_cols=40  Identities=15%  Similarity=0.123  Sum_probs=31.7

Q ss_pred             CEEEEcccCCCCCeeeEEEeEeCCCc--------ccceeEEEEEEeCC
Q psy7035          21 QSLVLQNVSRARAGHYTCVGSNGEGD--------GQSNAQKTAYDIGL   60 (70)
Q Consensus        21 ~tL~i~~v~~~D~G~Y~C~a~N~~G~--------~~s~~~~L~V~~~p   60 (70)
                      .+|+|.+++.+|+|.|+|.|.|..|.        ..+..+.|.|...|
T Consensus        78 ~~L~I~~v~~~DsG~Y~C~a~n~~g~~~~~~~~~~~~~~~~l~V~~~~  125 (257)
T 1f3r_B           78 VFLKMNSLQTDDTGTYYCTRDLYGGYPLGFWYFDFWGPGTMVTVSSGG  125 (257)
T ss_dssp             EEEEEESCCTTCCEEEEEEEESSSSCCSSCCCEEEECCCEEEEECSSC
T ss_pred             EEEEECCCCcccCEEEEEEEcccccCccccccccccCCceEEEEEeCC
Confidence            38999999999999999999998651        12345688888654

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A

Probab=98.31  E-value=6.8e-07  Score=57.73  Aligned_cols=42  Identities=12%  Similarity=0.223  Sum_probs=34.2

Q ss_pred             cCCEEEEcccCCCCCeeeEEE-eEeCCCcccceeEEEEEEeCCC
Q psy7035          19 SNQSLVLQNVSRARAGHYTCV-GSNGEGDGQSNAQKTAYDIGLG   61 (70)
Q Consensus        19 ~~~tL~i~~v~~~D~G~Y~C~-a~N~~G~~~s~~~~L~V~~~p~   61 (70)
                      .+++|.|.+++.+|+|.|+|. +.|..|. .+..+.|.|...|.
T Consensus        90 ~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~-~~~~~~l~V~~~p~  132 (331)
T 3u83_A           90 TDGTIRLSRLELEDEGVYICEFATFPTGN-RESQLNLTVMAKPT  132 (331)
T ss_dssp             SBCCEEECSCCGGGCEEEEEEEEEETTEE-EEEEEEEEEEBCCE
T ss_pred             CCceEEEcccCcccCcEEEEEEEecCCCc-cEEEEEEEEecCCc
Confidence            357899999999999999998 5555554 56689999997664

>2or7_A T-cell immunoglobulin and mucin domain- containing protein 2; beta barrel, immunoglobulin fold, IGV domain, TIM, immune system; 1.50A {Mus musculus}

Probab=98.31  E-value=8.2e-07  Score=50.74  Aligned_cols=36  Identities=19%  Similarity=0.135  Sum_probs=29.0

Q ss_pred             CEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEE
Q psy7035          21 QSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYD   57 (70)
Q Consensus        21 ~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~   57 (70)
                      .+|+|.+++.+|+|.|.|.+.+..... ...+.|.|.
T Consensus        74 ~sL~I~~v~~~DsG~Y~C~v~~~~~~~-~~~v~L~V~  109 (115)
T 2or7_A           74 VSLTIENTVVGDGGPYCCVVEIPGAFH-FVDYMLEVK  109 (115)
T ss_dssp             CCEEESSCCGGGCEEEEEEECCTTSCE-EEEEEEEEE
T ss_pred             EEEEEccCCHHHCEEEEEEEECCCcee-EEEEEEEEc
Confidence            489999999999999999998864433 556777775

>1bec_A 14.3.D T cell antigen receptor; T cell receptor; 1.70A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1jck_A 1l0x_A 1sbb_A 1l0y_A 3c6l_B 1mwa_B* 1g6r_B* 1tcr_B* 2ckb_B 2q86_B* 1lp9_F 2j8u_F 2jcc_F 2uwe_F 3mbe_D* 1d9k_B* 2aq3_A 3mc0_A 3byt_A 3bzd_A ...

Probab=98.30  E-value=3.9e-07  Score=57.43  Aligned_cols=39  Identities=18%  Similarity=0.264  Sum_probs=30.1

Q ss_pred             CEEEEcccCCCCCeeeEEEeEeCCCc----ccceeEEEEEEeC
Q psy7035          21 QSLVLQNVSRARAGHYTCVGSNGEGD----GQSNAQKTAYDIG   59 (70)
Q Consensus        21 ~tL~i~~v~~~D~G~Y~C~a~N~~G~----~~s~~~~L~V~~~   59 (70)
                      .+|.|.+++.+|+|.|.|.+.|..+.    ..+....|.|...
T Consensus        72 ~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~  114 (238)
T 1bec_A           72 FSLILELATPSQTSVYFCASGGGRGSYAEQFFGPGTRLTVLED  114 (238)
T ss_dssp             EEEEESSCCGGGCEEEEEEEESCTTCGGGCEECCCEEEEEESC
T ss_pred             EEEEEecCCcccCEEEEEEEecCCCCccccccCCCEEEEEecc
Confidence            48999999999999999999997531    1233467888753

>3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A {Mus musculus}

Probab=98.30  E-value=1.1e-06  Score=56.05  Aligned_cols=47  Identities=17%  Similarity=0.073  Sum_probs=34.0

Q ss_pred             CCEEEEcccCCCCCeeeEEEeEeCCC---cccceeEEEEEEeCCCCCCCC
Q psy7035          20 NQSLVLQNVSRARAGHYTCVGSNGEG---DGQSNAQKTAYDIGLGIPAEP   66 (70)
Q Consensus        20 ~~tL~i~~v~~~D~G~Y~C~a~N~~G---~~~s~~~~L~V~~~p~~~~~p   66 (70)
                      +.+|.|.+++.+|+|.|.|.+.|..+   ...+....|.|...+..+.+|
T Consensus       100 ~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P  149 (270)
T 3qib_D          100 PCSLEIQSSEAGDSALYLCASSLNWSQDTQYFGPGTRLLVLEDLKNVFPP  149 (270)
T ss_dssp             CEEEEESSCCGGGCEEEEEEEESCTTCCCCEECCCEEEEEESCSTTCBCC
T ss_pred             EEEEEECCCCHhHCeEEEEEEecCCCccceEECCcEEEEEccccccccCC
Confidence            45899999999999999999997432   223445688888644444444

>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens}

Probab=98.30  E-value=6.3e-07  Score=61.72  Aligned_cols=37  Identities=8%  Similarity=0.039  Sum_probs=29.5

Q ss_pred             EEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeCC
Q psy7035          22 SLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGL   60 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~p   60 (70)
                      +|.|.+++.+| |.|+|.|.|..|... ..+.|.|...|
T Consensus       282 ~L~i~~~~~~d-G~Y~C~a~n~~g~~~-~~~~l~v~~~P  318 (523)
T 2rcj_C          282 VVTVPSSSLGT-QTYICNVNHKPSNTK-VDKRVEPLSLP  318 (523)
T ss_pred             EEEechhhcCC-ceEEEEEEeCCCCcc-eEEecCCCcCc
Confidence            89999999999 999999999999753 34566554433

>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1

Probab=98.30  E-value=6.9e-07  Score=56.00  Aligned_cols=37  Identities=11%  Similarity=0.120  Sum_probs=32.0

Q ss_pred             CEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEE
Q psy7035          21 QSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYD   57 (70)
Q Consensus        21 ~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~   57 (70)
                      .+|+|.+++.+|+|.|+|.|.|..+...+....|.|.
T Consensus       205 ~~L~I~~v~~~D~G~Y~C~a~~~~~~~~g~~t~l~V~  241 (247)
T 2ghw_B          205 FTLTISRLEPEDFAVYYCQQRSNWPPTFGQGTKVEVK  241 (247)
T ss_dssp             EEEEECSCCGGGCEEEEEEECSSSSCEECCCEEEEEC
T ss_pred             EEEEECcCCHHHCEEEEEEEccCCCceEcCCEEEEEC
Confidence            3799999999999999999999766666667788886

>1mju_H Immunoglobulin MS6-12; catalytic antibody, ester hydrolysis, esterolytic, FAB, immune system; 1.22A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mjj_B 1mie_H 1mj7_H* 1mj8_H 1mh5_B* 4aeh_H 2y5t_A 2vwe_E 2op4_H 2ntf_H 3loh_C 1e4x_H 2vl5_A 1e4x_I 1e4w_H 3opz_H 3oz9_H 1plg_H 1hi6_B 1cfn_B ...

Probab=98.29  E-value=5.2e-07  Score=56.71  Aligned_cols=38  Identities=11%  Similarity=0.088  Sum_probs=30.4

Q ss_pred             CEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEe
Q psy7035          21 QSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDI   58 (70)
Q Consensus        21 ~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~   58 (70)
                      .+|+|.+++.+|+|.|.|.+.|..+...+..+.|.|..
T Consensus        79 ~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~L~V~~  116 (227)
T 1mju_H           79 AYMQLSSLTSDDSAVYYCANKLGWFPYWGQGTLVTVSA  116 (227)
T ss_dssp             EEEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEECS
T ss_pred             EEEEECCCCcccCEEEEEEECCCCceEEcCcEEEEEcC
Confidence            48999999999999999999996433333456888874

>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}

Probab=98.29  E-value=1e-06  Score=52.96  Aligned_cols=41  Identities=20%  Similarity=0.229  Sum_probs=33.4

Q ss_pred             CCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeCC
Q psy7035          20 NQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGL   60 (70)
Q Consensus        20 ~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~p   60 (70)
                      +.+|+|.+++.+|+|.|.|.+.|..+........+.+...+
T Consensus        78 ~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~  118 (218)
T 4frw_A           78 DGSVLLRNAVQADEGEYECRVSTFPAGSFQARLRLRVLVPP  118 (218)
T ss_dssp             BCCEEESSCCGGGCEEEEEEEEEETTEEEEEEEEEEEEBCC
T ss_pred             eEEEEEeeccHHHCCceeEEEEeccCceeeeEEEEEEeeec
Confidence            46799999999999999999999887766666666666444

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A

Probab=98.29  E-value=4e-07  Score=55.80  Aligned_cols=33  Identities=3%  Similarity=0.014  Sum_probs=26.2

Q ss_pred             ccCCCCCeeeEEEeEeCCCcccceeEEEEEEeCC
Q psy7035          27 NVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGL   60 (70)
Q Consensus        27 ~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~p   60 (70)
                      .++.+|+|.|+|.|+|..|.. +..+.|.|...|
T Consensus       181 ~v~~~d~g~Y~C~a~n~~g~~-~~~~~l~v~~~p  213 (222)
T 3sbw_C          181 RINTTTNEIFYCTFRRLDPEE-NHTAELVIPELP  213 (222)
T ss_dssp             EEECCTTCEEEEEEEETTTTE-EEEEEEECCCC-
T ss_pred             EEeccCCcEEEEEEEeCccce-eeEEEEEecCCc
Confidence            567899999999999999975 446788887554

>1x9q_A SCFV, 4M5.3 anti-fluorescein single chain antibody fragment; VERY high affinity, antibody binding, electrostatics, directed evolution; HET: FLU; 1.50A {Homo sapiens}

Probab=98.28  E-value=7.8e-07  Score=56.93  Aligned_cols=40  Identities=18%  Similarity=0.131  Sum_probs=29.6

Q ss_pred             CEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeCC
Q psy7035          21 QSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGL   60 (70)
Q Consensus        21 ~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~p   60 (70)
                      .+|+|.+++.+|+|.|.|.|.|..+...+....|.|...+
T Consensus        90 ~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~L~V~~~~  129 (268)
T 1x9q_A           90 FTLKINRVEAEDLGVYFCSQSTHVPWTFGGGTKLEIKSSA  129 (268)
T ss_dssp             EEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEC-----
T ss_pred             EEEEECCCChhHCEEEEEEEecCCCceEcCCEEEEEccCc
Confidence            3899999999999999999999866544556788887654

>4ety_A LAIR-1, mlair1, leukocyte-associated immunoglobulin-like receptor; IG-like domain, extra celluar domain, domain swappin nysgrc, structural genomics; 1.90A {Mus musculus}

Probab=98.28  E-value=4.9e-07  Score=53.77  Aligned_cols=46  Identities=20%  Similarity=0.348  Sum_probs=34.6

Q ss_pred             CCEEEEcccCCCCCeeeEEEeEeCCC-cccceeEEEEEEeCCCCCCCC
Q psy7035          20 NQSLVLQNVSRARAGHYTCVGSNGEG-DGQSNAQKTAYDIGLGIPAEP   66 (70)
Q Consensus        20 ~~tL~i~~v~~~D~G~Y~C~a~N~~G-~~~s~~~~L~V~~~p~~~~~p   66 (70)
                      +..+.|.+++.+|+|.|.|...+..+ +..|+++.|.|... ..-+.|
T Consensus        62 ~a~f~i~~vt~~daG~Y~C~y~~~~~wS~~Sdpl~L~Vtg~-slsa~P  108 (118)
T 4ety_A           62 EDEFEIGPVNETITGHYSCIYSKGITWSERSKTLELKVIKE-NVIQTP  108 (118)
T ss_dssp             EEEEEECSCCGGGCEEEEEEEEC----CEECCCEEEEEECC-CCCCCC
T ss_pred             ceEEEeCccCccCCeEEEEEeeCCCccccccCCEEEEEEEe-Eeeeee
Confidence            35799999999999999999998766 56699999999854 334443

>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ...

Probab=98.28  E-value=3.3e-07  Score=56.07  Aligned_cols=33  Identities=18%  Similarity=0.363  Sum_probs=26.5

Q ss_pred             CEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEE
Q psy7035          21 QSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAY   56 (70)
Q Consensus        21 ~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V   56 (70)
                      .+|.|.+++.+|+|.|+|.|.|.....   ++..++
T Consensus       177 s~L~i~~~~~~d~G~Y~C~a~n~~~~~---~~~~~i  209 (213)
T 3d9a_L          177 STLTLTKDEYERHNSYTCEATHKTSTS---PIVKSF  209 (213)
T ss_dssp             EEEEEEHHHHHHCCEEEEEEECTTCSS---CEEEEE
T ss_pred             EEEEEeccccCCCCEEEEEEEEccCCC---ceEEEe
Confidence            389999999999999999999976542   444444

>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens} PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E

Probab=98.27  E-value=4.7e-07  Score=56.74  Aligned_cols=38  Identities=8%  Similarity=0.125  Sum_probs=30.1

Q ss_pred             CEEEEcccCCCCCeeeEEEeEeCCC---cccceeEEEEEEe
Q psy7035          21 QSLVLQNVSRARAGHYTCVGSNGEG---DGQSNAQKTAYDI   58 (70)
Q Consensus        21 ~tL~i~~v~~~D~G~Y~C~a~N~~G---~~~s~~~~L~V~~   58 (70)
                      .+|.|.+++.+|+|.|+|.|.|..+   ...+....|.|..
T Consensus        77 ~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~  117 (246)
T 4dzb_B           77 STLTVTSAHPEDSSFYICSARTSGDFGEQFFGPGTRLTVLE  117 (246)
T ss_dssp             EEEEECSCCGGGCEEEEEEECCSSGGGCCEECCCEEEEEES
T ss_pred             EEEEECCCCHHHCEEEEEEEecCCCCcceEEcCCEEEEEec
Confidence            3899999999999999999998643   2233456788875

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A*

Probab=98.27  E-value=1e-06  Score=53.58  Aligned_cols=46  Identities=7%  Similarity=-0.055  Sum_probs=30.6

Q ss_pred             cccCeEcCcCccceEEecC-CEE---EEcccCCCCCeeeEEEeEeCCCcc
Q psy7035           2 SFSNVQLYNNISAGVIVSN-QSL---VLQNVSRARAGHYTCVGSNGEGDG   47 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~~~~-~tL---~i~~v~~~D~G~Y~C~a~N~~G~~   47 (70)
                      ++||+++...........+ +.+   .+..++.+|+|.|+|.|+|..|..
T Consensus       142 ~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~d~g~Y~C~a~n~~~~~  191 (201)
T 1dr9_A          142 LENGEELNAINTTVSQDPETELYAVSSKLDFNMTTNHSFMCLIKYGHLRV  191 (201)
T ss_dssp             EESSCEECCSEEEEEECTTTCCEEEEEEEEEETTSCEEEEEEEEETTCCE
T ss_pred             EECCEECccccceEEecCCCcEEEEEEEEEEEecCCCEEEEEEecCccee
Confidence            5788888754333322233 322   335667899999999999998864

>1q9r_B S25-2 FAB (IGG1K) heavy chain; antigen-binding fragment, anti-carbohydrate, anti-LPS, antibody, immunoglobulin, KDO, complex, immune system; HET: KDA KDO; 1.45A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q9l_B 1q9k_B* 1q9q_B* 1q9v_B* 2r1w_B* 2r1x_B* 2r1y_B* 2r2b_B* 2r2e_B* 2r2h_B* 3bpc_B* 3sy0_B* 3t4y_B* 3t65_B* 2r23_B* 1q9t_B* 3t77_B* 3okl_B* 3okk_B* 3okm_B ...

Probab=98.27  E-value=7.5e-07  Score=55.13  Aligned_cols=38  Identities=8%  Similarity=0.070  Sum_probs=30.3

Q ss_pred             CEEEEcccCCCCCeeeEEEeEeCCCc----ccceeEEEEEEe
Q psy7035          21 QSLVLQNVSRARAGHYTCVGSNGEGD----GQSNAQKTAYDI   58 (70)
Q Consensus        21 ~tL~i~~v~~~D~G~Y~C~a~N~~G~----~~s~~~~L~V~~   58 (70)
                      .+|+|.+++.+|+|.|.|.+.|..|.    ..+....|.|..
T Consensus        81 ~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~  122 (222)
T 1q9r_B           81 LYLQMNTLRAEDSATYYCARDHDGYYERFSYWGQGTLVTVSA  122 (222)
T ss_dssp             EEEEECSCCGGGCEEEEEEECCCSSCCSCCCBCCCEEEEECS
T ss_pred             EEEEECcCCcccCeEEEEEEeccCCcccceEeCCceEEEecc
Confidence            48999999999999999999997651    233456788874

>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens}

Probab=98.27  E-value=9.5e-07  Score=60.82  Aligned_cols=28  Identities=14%  Similarity=0.172  Sum_probs=25.1

Q ss_pred             EEEEcccCCCCCeeeEEEeEeCCCcccc
Q psy7035          22 SLVLQNVSRARAGHYTCVGSNGEGDGQS   49 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N~~G~~~s   49 (70)
                      +|.|.+++.+|+|.|+|.|.|..|....
T Consensus       179 ~L~i~~~~~~d~G~Y~C~a~n~~~~~~~  206 (523)
T 2rcj_C          179 YLSLTPEQWKSHRSYSCQVTHEGSTVEK  206 (523)
T ss_pred             EEEEechhcCCCceEEEEEEecCccccc
Confidence            6999999999999999999999886543

>4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus}

Probab=98.27  E-value=2.2e-07  Score=57.14  Aligned_cols=38  Identities=34%  Similarity=0.315  Sum_probs=30.8

Q ss_pred             CCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeC
Q psy7035          20 NQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIG   59 (70)
Q Consensus        20 ~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~   59 (70)
                      +.+|.|.+++.+|+|.|+|.+.|..  ..+..+.|.|...
T Consensus        71 ~~sL~I~~v~~~D~G~Y~C~~~~~~--~~~~~~~l~V~~~  108 (222)
T 4i0k_A           71 NASLRLQRVRVTDEGSYTCFVSIQD--FDSAAVSLQVAAP  108 (222)
T ss_dssp             BCCEEECSCCGGGCSCEEEEEEECC--CCCCCCCCCCCBC
T ss_pred             eEEEEECCcccccCEEEEEEEEeCC--CceEEEEEEEEcC
Confidence            6789999999999999999999963  2355677777744

>1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=98.27  E-value=6.4e-07  Score=57.90  Aligned_cols=40  Identities=15%  Similarity=0.188  Sum_probs=31.3

Q ss_pred             CEEEEcccCCCCCeeeEEEeEeCCCc----ccceeEEEEEEeCC
Q psy7035          21 QSLVLQNVSRARAGHYTCVGSNGEGD----GQSNAQKTAYDIGL   60 (70)
Q Consensus        21 ~tL~i~~v~~~D~G~Y~C~a~N~~G~----~~s~~~~L~V~~~p   60 (70)
                      .+|+|.+++.+|+|.|.|.|.|..|.    ..+..+.|.|...|
T Consensus       105 ~sL~I~~v~~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~~  148 (282)
T 1qok_A          105 AYLQLSSLTSEDTAVYYCNEGTPTGPYYFDYWGQGTTVTVSSGG  148 (282)
T ss_dssp             EEEEECSCCGGGCEEEEEEEECSSSSCCCEEECCCEEEEEEC--
T ss_pred             EEEEECcCChhhCEEEEEEeccCCCccceeeeCCCEEEEEecCC
Confidence            48999999999999999999998772    12345688998654

>2gjj_A A21 single-chain antibody fragment against ERBB2; IG family, SCFV, immune system; 2.10A {Mus musculus} PDB: 3h3b_C

Probab=98.26  E-value=8e-07  Score=57.16  Aligned_cols=40  Identities=13%  Similarity=0.077  Sum_probs=32.9

Q ss_pred             CEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeCC
Q psy7035          21 QSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGL   60 (70)
Q Consensus        21 ~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~p   60 (70)
                      .+|+|.+++.+|+|.|.|.|.|..+...+..+.|.|...|
T Consensus        81 ~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~L~V~~~~  120 (264)
T 2gjj_A           81 FTLTIGSVKAEDLAVYYCQQYSNYPWTFGGGTRLEIKRGG  120 (264)
T ss_dssp             EEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEECC-
T ss_pred             EEEEECCCCHHHCEEEEEEEecCCccEecCCEEEEEEcCC
Confidence            3899999999999999999999866544556789998664

>1op3_H FAB 2G12, heavy chain; domain-swapped FAB 2G12, anti-carbohydrate antibody, immune system; HET: MAN; 1.75A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1om3_H* 1op5_H* 3oay_M* 1zlu_H* 1zlv_H* 1zlw_H* 2oqj_B 1zls_H* 3ob0_H* 3oau_H* 3oaz_H* 3ghe_H 3eyf_B 3eyo_B 3ghb_H 3c2a_H 1q1j_H 2fl5_H*

Probab=98.26  E-value=1e-06  Score=55.10  Aligned_cols=38  Identities=8%  Similarity=0.123  Sum_probs=31.0

Q ss_pred             CEEEEcccCCCCCeeeEEEeEeCCC-----c--ccceeEEEEEEe
Q psy7035          21 QSLVLQNVSRARAGHYTCVGSNGEG-----D--GQSNAQKTAYDI   58 (70)
Q Consensus        21 ~tL~i~~v~~~D~G~Y~C~a~N~~G-----~--~~s~~~~L~V~~   58 (70)
                      .+|+|.+++.+|+|.|.|.+.|..|     .  ..+..+.|.|..
T Consensus        79 ~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~L~V~~  123 (225)
T 1op3_H           79 VYLQMHKMRVEDTAIYYCARKGSDRLSDNDPFDAWGPGTVVTVSP  123 (225)
T ss_dssp             EEEEECSCCGGGCEEEEEEEECCSSCCSSCCEEEECCCEEEEEES
T ss_pred             EEEEECCCChhhCEEEEEEEecCCCccccccceeecCCEEEeccc
Confidence            5899999999999999999999875     2  223457888885

>3ux9_B SCFV antibody; five helices, long loop connecting helix, hydrophobic intera cytokine-immune system complex; 2.80A {Homo sapiens}

Probab=98.25  E-value=1.7e-06  Score=54.52  Aligned_cols=39  Identities=13%  Similarity=0.118  Sum_probs=29.9

Q ss_pred             EEEEcccCCCCCeeeEEEeEeCCCc--ccceeEEEEEEeCC
Q psy7035          22 SLVLQNVSRARAGHYTCVGSNGEGD--GQSNAQKTAYDIGL   60 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N~~G~--~~s~~~~L~V~~~p   60 (70)
                      +|+|.+++.+|+|.|+|.|.|..+.  ..+..+.|.|...|
T Consensus        75 ~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~l~V~~~~  115 (256)
T 3ux9_B           75 SLAITGLQSEDEADYYCQVRDNNENEWVFGGGTKLTVLGSG  115 (256)
T ss_dssp             EEEECSCCGGGCEEEEEEEEETTTTEEEECCCEEEEEC---
T ss_pred             EEEECCCChhhCEEEEEEEEECCCCceEECCCEEEEEECCC
Confidence            7999999999999999999997653  33455788887654

>3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A

Probab=98.25  E-value=8.1e-07  Score=56.20  Aligned_cols=37  Identities=11%  Similarity=0.045  Sum_probs=32.1

Q ss_pred             EEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEe
Q psy7035          22 SLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDI   58 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~   58 (70)
                      +|+|.+++.+|+|.|+|.|.|..+...+....|.|..
T Consensus        81 ~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~l~V~~  117 (253)
T 3uzq_A           81 YLHLSSLTSGDTAVYYCSRGWEGFAYWGQGTLVTVSA  117 (253)
T ss_dssp             EEEECSCCGGGCEEEEEEECSSSCCEECCCEEEEECS
T ss_pred             EEEeCCCCcccCEEEEEEEeeCCccEECCCcEEEEec
Confidence            4999999999999999999997776656678888874

>1i1r_A GP130, interleukin-6 receptor beta chain; cytokine/receptor complex, GP130; 2.40A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1p9m_A

Probab=98.24  E-value=2.3e-06  Score=55.62  Aligned_cols=58  Identities=10%  Similarity=0.099  Sum_probs=37.9

Q ss_pred             cccCeEcCcCccceEEecC--CEEEEcccCCCCCeeeEEEeEeCCCccc--ceeEEEEEEeCCCCC
Q psy7035           2 SFSNVQLYNNISAGVIVSN--QSLVLQNVSRARAGHYTCVGSNGEGDGQ--SNAQKTAYDIGLGIP   63 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~~~~--~tL~i~~v~~~D~G~Y~C~a~N~~G~~~--s~~~~L~V~~~p~~~   63 (70)
                      ++||++|..+ +.. ++++  ++|+|.++.+.| |.|+|.|.|. |...  ...+.|.|...|+.|
T Consensus        46 ~~~g~~i~~~-~~~-~~~~~~~~L~i~~~~~~~-g~Y~C~a~~~-g~~~~~~~~~~l~v~~~P~~P  107 (303)
T 1i1r_A           46 KTNHFTIPKE-QYT-IINRTASSVTFTDIASLN-IQLTCNILTF-GQLEQNVYGITIISGLPPEKP  107 (303)
T ss_dssp             EETTEECCGG-GCE-EEETTEEEEEECSCCCSE-EEEEEEEEET-TTEEEEEEEEEEEEECCCCCC
T ss_pred             EECCEECChh-hee-eeCCcEEEEEEcCcCCCc-eEEEEecccC-CCcceEEEEEEEeccCCCCCC
Confidence            4688888543 222 3333  479999999985 9999999884 4322  334667777555443

>2q20_A VK1 O18/O8 germline light chain variable domain; Al, light chain amyloidosis, amyloid, immunoglobulin, protein fibril; 1.30A {Homo sapiens} PDB: 2kqm_A 3cdf_A 3cdc_A 2kqn_A 3cdy_A 2q1e_A 3dvi_A 1igm_L 1bww_A 1b0w_A 1bre_A 1qp1_A 3dvf_A 1rei_A 1wtl_A 1ar2_A 1fgv_L 2bx5_A 2uzi_L* 1bvk_A ...

Probab=98.24  E-value=1.1e-06  Score=50.03  Aligned_cols=36  Identities=8%  Similarity=0.118  Sum_probs=26.6

Q ss_pred             CEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEE
Q psy7035          21 QSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAY   56 (70)
Q Consensus        21 ~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V   56 (70)
                      .+|+|.+++.+|+|.|.|.+.|........-..|.|
T Consensus        73 ~~L~I~~v~~~DsG~Y~C~~~~~~~~~fg~gT~L~V  108 (109)
T 2q20_A           73 FTFTISSLQPEDIATYYCQQYDNLPYTFGQGTKLEI  108 (109)
T ss_dssp             EEEEESSCCGGGCEEEEEEECSSSSCCBCCCEEEEE
T ss_pred             EEEEECCCChhhCEEEEEEEeeCCcceECCCEEEEE
Confidence            379999999999999999999853222233345555

>1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex (immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=98.24  E-value=2.3e-06  Score=52.34  Aligned_cols=38  Identities=13%  Similarity=0.202  Sum_probs=28.8

Q ss_pred             CEEEEcccCCCCCeeeEEEeEeCCC--cccceeEEEEEEe
Q psy7035          21 QSLVLQNVSRARAGHYTCVGSNGEG--DGQSNAQKTAYDI   58 (70)
Q Consensus        21 ~tL~i~~v~~~D~G~Y~C~a~N~~G--~~~s~~~~L~V~~   58 (70)
                      .+|+|.+++.+|+|.|+|.|.|..+  ...+....|.|..
T Consensus        69 ~~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~~~~l~V~~  108 (212)
T 1nfd_E           69 ATLTISGAQPEDEAAYYCLSSYGDNNDLVFGSGTQLTVLR  108 (212)
T ss_dssp             EEEEETTCCGGGCSEEEEEEEETTTTEEEECCCEEEEEEC
T ss_pred             EEEEECcCCcccCEEEEEEEEcccCcccccCCceEEEEcc
Confidence            3899999999999999999998322  2224456788863

>3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens}

Probab=98.24  E-value=7.2e-07  Score=56.53  Aligned_cols=36  Identities=14%  Similarity=0.143  Sum_probs=30.8

Q ss_pred             EEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEE
Q psy7035          22 SLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYD   57 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~   57 (70)
                      +|+|.+++.+|+|.|+|.|.|..+...+....|.|+
T Consensus       221 ~L~I~~v~~~DsG~Y~C~~~~~~~~~~g~gt~l~V~  256 (256)
T 3juy_B          221 TLTITRVEPEDFALYYCQVYGASSYTFGQGTKLERK  256 (256)
T ss_dssp             EEEESSCCGGGCSEEEEEECCSSCCEECCCEEEEEC
T ss_pred             EEEECCCCHhHCEEEEEEEeeCCCceEcCCEEEEEC
Confidence            699999999999999999999776666667777763

>3kgr_A LAIR-1, hlair1, leukocyte-associated immunoglobulin-like receptor; IG-like domain, cell membrane, glycoprotein; 1.80A {Homo sapiens} PDB: 3rp1_A

Probab=98.23  E-value=9.6e-07  Score=50.56  Aligned_cols=38  Identities=21%  Similarity=0.281  Sum_probs=33.5

Q ss_pred             CCEEEEcccCCCCCeeeEEEeEeCC-CcccceeEEEEEE
Q psy7035          20 NQSLVLQNVSRARAGHYTCVGSNGE-GDGQSNAQKTAYD   57 (70)
Q Consensus        20 ~~tL~i~~v~~~D~G~Y~C~a~N~~-G~~~s~~~~L~V~   57 (70)
                      +.++.|..|+++|+|.|.|...|.. .+..|+++.|.|.
T Consensus        64 ~~~f~i~~vt~~~aG~Y~C~~~~~~~~S~~Sdpl~L~Vt  102 (106)
T 3kgr_A           64 EARFRIDSVSEGNAGPYRCIYYKPPKWSEQSDYLELLVK  102 (106)
T ss_dssp             EEEEEESSCCGGGCEEEEEEEEETTEECCCCCCEEEEEE
T ss_pred             ceEEEecCCCcCCCceEEEEeeCCCcccCCCCCEEEEEe
Confidence            4579999999999999999999964 4677999999997

>2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II, MEM receptor, molecular mimicry, multiple sclerosis, immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo sapiens}

Probab=98.23  E-value=9e-07  Score=57.02  Aligned_cols=39  Identities=8%  Similarity=0.132  Sum_probs=29.7

Q ss_pred             CEEEEcccCCCCCeeeEEEeEeCCCc-----ccceeEEEEEEeC
Q psy7035          21 QSLVLQNVSRARAGHYTCVGSNGEGD-----GQSNAQKTAYDIG   59 (70)
Q Consensus        21 ~tL~i~~v~~~D~G~Y~C~a~N~~G~-----~~s~~~~L~V~~~   59 (70)
                      .+|.|.+++.+|+|.|+|.|.|..|.     ..+..+.|.|...
T Consensus       100 ~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~l~V~~~  143 (279)
T 2wbj_D          100 STLTVTSAHPEDSSFYICSARDLTSGANNEQFFGPGTRLTVTED  143 (279)
T ss_dssp             EEEEESSCCGGGCEEEEEEEEETTCBTSCCEEECCCEEEEEESC
T ss_pred             EEEEEccCCccCCEEEEEEEcccccCCccceeeCCCEEEEEecC
Confidence            38999999999999999999995431     1233467888753

>2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN; 1.75A {Gallus gallus}

Probab=98.23  E-value=7.2e-07  Score=56.39  Aligned_cols=35  Identities=9%  Similarity=0.059  Sum_probs=28.4

Q ss_pred             EEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeC
Q psy7035          22 SLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIG   59 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~   59 (70)
                      +|+|.+++.+|+|.|+|.|.|..+.   ..+.+.|...
T Consensus        78 ~L~I~~~~~~D~g~Y~C~~~~~~~~---~~~~~~v~~~  112 (231)
T 2w59_A           78 AVPVSTQDWLSGERFTCTVQHEELP---LPLSKSVYRN  112 (231)
T ss_dssp             EEECCHHHHHTTCCEEEEEECTTCS---SCEEEEECCC
T ss_pred             EEEecchhccCCCEEEEEEEcCCCC---CceEEEEecC
Confidence            6999999999999999999998764   3456666543

>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=98.23  E-value=1.5e-06  Score=58.83  Aligned_cols=46  Identities=13%  Similarity=0.103  Sum_probs=32.9

Q ss_pred             cccCeEcCcCcc-ceEEec------CCEEEEcccCCCCCeeeEEEeEeCCCcc
Q psy7035           2 SFSNVQLYNNIS-AGVIVS------NQSLVLQNVSRARAGHYTCVGSNGEGDG   47 (70)
Q Consensus         2 ~~ng~~l~~~~~-~~~~~~------~~tL~i~~v~~~D~G~Y~C~a~N~~G~~   47 (70)
                      ++||.++..... ......      .++|.|.+++.+|+|.|+|.|.|..|..
T Consensus       279 ~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~  331 (444)
T 1igt_B          279 FVNNVEVHTAQTQTHREDYNSTLRVVSALPIQHQDWMSGKEFKCKVNNKDLPA  331 (444)
T ss_dssp             EETTEECSSTTCBCCEEECSSSEEEEEEEECCHHHHHTTCEEEEEEECTTCSS
T ss_pred             EECCccccCcccccceeCCCCcEEEEEEEEEcHHHhccCCcEEEEEEcCCCCC
Confidence            467777653221 112222      3489999999999999999999998865

>3d9a_H Heavy chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_H 1gpo_H 3ks0_H* 1dqd_H 1ndm_B 1nak_H 1dqq_B 1dqm_H 1dqj_B 1nby_B 1nbz_B 1xgu_B 1ndg_B 1xgt_B 1xgp_B 1xgq_B 1xgr_B 1s5i_H 1f8t_H 1f90_H ...

Probab=98.22  E-value=1.1e-06  Score=53.95  Aligned_cols=35  Identities=17%  Similarity=0.269  Sum_probs=28.4

Q ss_pred             EEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEe
Q psy7035          22 SLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDI   58 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~   58 (70)
                      +|.|.+++.+|+|.|+|.|.|..  ..+....|.|..
T Consensus        79 ~L~I~~v~~~D~G~Y~C~~~~~~--~~~~~~~l~V~~  113 (210)
T 3d9a_H           79 YLDLNSVTTEDTATYYCANWDGD--YWGQGTLVTVSA  113 (210)
T ss_dssp             EEEECSCCGGGCEEEEEEETTSS--CBCCCEEEEECC
T ss_pred             EEEECCCCcccCEEEEEEEecCc--ccccceEEEecc
Confidence            89999999999999999999964  223346788763

>1pz5_B Heavy chain of FAB (SYA/J6); antibody-antigen structure, peptide-carbohydrate mimicry, VA design, immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1m7d_B* 1m71_B* 1m7i_B* 1r24_B 1uz6_F 1uz8_B* 1clz_H*

Probab=98.22  E-value=1.8e-06  Score=53.36  Aligned_cols=37  Identities=16%  Similarity=0.262  Sum_probs=29.9

Q ss_pred             EEEEcccCCCCCeeeEEEeEeCCCc--ccceeEEEEEEe
Q psy7035          22 SLVLQNVSRARAGHYTCVGSNGEGD--GQSNAQKTAYDI   58 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N~~G~--~~s~~~~L~V~~   58 (70)
                      +|+|.+++.+|+|.|.|.+.|..|.  ..+..+.|.|..
T Consensus        82 ~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~  120 (220)
T 1pz5_B           82 YLQMNNLRAEDTGIYYCTRGGAVGAMDYWGQGTSVTVSS  120 (220)
T ss_dssp             EEEECSCCGGGCEEEEEEEECTTSSEEEECCCEEEEECS
T ss_pred             EEEEccCCHHHCEEEEEEEecCCcccceECCCEEEEEcc
Confidence            8999999999999999999997653  222457788874

>2fbj_H IGA-kappa J539 FAB (heavy chain); immunoglobulin; HET: NAG FUC; 1.95A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mcp_H 2mcp_H*

Probab=98.21  E-value=1.3e-06  Score=54.57  Aligned_cols=39  Identities=13%  Similarity=0.076  Sum_probs=31.1

Q ss_pred             CEEEEcccCCCCCeeeEEEeEeCCCc--ccceeEEEEEEeC
Q psy7035          21 QSLVLQNVSRARAGHYTCVGSNGEGD--GQSNAQKTAYDIG   59 (70)
Q Consensus        21 ~tL~i~~v~~~D~G~Y~C~a~N~~G~--~~s~~~~L~V~~~   59 (70)
                      .+|+|.+++.+|+|.|.|.+.|..+.  ..+..+.|.|...
T Consensus        79 ~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~  119 (220)
T 2fbj_H           79 LYLQMSKVRSEDTALYYCARLHYYGYNAYWGQGTLVTVSAE  119 (220)
T ss_dssp             EEEEECSCCGGGCEEEEEEEEETTTEEEEECCCEEEEECSS
T ss_pred             EEEEECCCChhhCEEEEEEEeccccccceecCCEEEEecCC
Confidence            38999999999999999999997653  2334568888753

>3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L

Probab=98.20  E-value=1.5e-06  Score=55.91  Aligned_cols=39  Identities=10%  Similarity=-0.016  Sum_probs=29.5

Q ss_pred             EEEEcccCCCCCeeeEEEeEeCC----CcccceeEEEEEEeCC
Q psy7035          22 SLVLQNVSRARAGHYTCVGSNGE----GDGQSNAQKTAYDIGL   60 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N~~----G~~~s~~~~L~V~~~p   60 (70)
                      +|+|.+++.+|+|.|+|.|.|..    .........|.|...|
T Consensus       214 ~L~I~~v~~~DsG~Y~C~a~n~~~~~~~~~fg~gt~l~V~~~~  256 (276)
T 3auv_A          214 YLQMNSLRAEDTAVYYCARFVFFLPYAMDYWGQGTLVTVSSAS  256 (276)
T ss_dssp             EEEECSCCGGGCEEEEEEEECSSTTCSCCCBCCCEEEEEC---
T ss_pred             EEEECCCChhHCEEEEEEEEcCcCCcCceEECCCEEEEEcccc
Confidence            89999999999999999999983    2233445788887444

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A*

Probab=98.19  E-value=4.5e-06  Score=52.82  Aligned_cols=54  Identities=17%  Similarity=0.152  Sum_probs=40.7

Q ss_pred             cccCeEcCcCccceEEecCCEEEEccc---CCCCCee--eEEEeEeCCCcccceeEEEEEEeCC
Q psy7035           2 SFSNVQLYNNISAGVIVSNQSLVLQNV---SRARAGH--YTCVGSNGEGDGQSNAQKTAYDIGL   60 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~~~~~tL~i~~v---~~~D~G~--Y~C~a~N~~G~~~s~~~~L~V~~~p   60 (70)
                      +|||+++..    .+...+++|.|..+   +.+|+|.  |+|.|.|..|.. +..+.|.|...|
T Consensus        41 ~k~~~~l~~----~~~~~~~~~~~~~~~~~~~~d~g~g~Y~C~a~n~~~~~-~~~~~l~V~~~p   99 (265)
T 2oz4_A           41 ALGDQRLNP----TVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQ-ETLQTVTIYSFP   99 (265)
T ss_dssp             EETTEECCC----EEEECSSEEEEEEEEEECGGGCEEEEEEEEEEETTEEE-EEEEEEEEECCC
T ss_pred             EeCCEECCc----eEeeCCCeEEEEeecccccccCCcceEEEEEecCCCCc-EEEEEEEEeCCC
Confidence            467777653    34456778888877   7888885  999999998874 467899998544

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens}

Probab=98.19  E-value=1.6e-06  Score=53.33  Aligned_cols=35  Identities=23%  Similarity=0.308  Sum_probs=26.9

Q ss_pred             cCCEEEEcccCCC-CCeeeEEEeEeCCCcccceeEEE
Q psy7035          19 SNQSLVLQNVSRA-RAGHYTCVGSNGEGDGQSNAQKT   54 (70)
Q Consensus        19 ~~~tL~i~~v~~~-D~G~Y~C~a~N~~G~~~s~~~~L   54 (70)
                      .++.|.|....++ |+|.|+|.|+|..|.. +.++.+
T Consensus       153 ~~~~l~i~~~~~~~d~G~Y~C~a~N~~g~~-s~~~~~  188 (193)
T 2if7_A          153 SQPNLTVSWDPRISSEQDYTCIAENAVSNL-SFSVSA  188 (193)
T ss_dssp             SSSEEEEEECTTTCSCCEEEEEEEETTEEE-EEEEEH
T ss_pred             CCCeEEEEeccCcCCCCcEEEEEECCCCcc-cccccc
Confidence            4567888766665 9999999999999975 445443

>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A*

Probab=98.19  E-value=6e-07  Score=56.32  Aligned_cols=40  Identities=13%  Similarity=0.082  Sum_probs=26.9

Q ss_pred             CEEEEcccCCCCCeeeEEEeEeCCCc-ccceeEEEEEEeCCC
Q psy7035          21 QSLVLQNVSRARAGHYTCVGSNGEGD-GQSNAQKTAYDIGLG   61 (70)
Q Consensus        21 ~tL~i~~v~~~D~G~Y~C~a~N~~G~-~~s~~~~L~V~~~p~   61 (70)
                      .+|.|..+..+|.|.|+|.|+|..+. ..+..+.|.| ..|.
T Consensus       188 s~L~i~~~~~~d~g~YtC~a~n~~~~~~~~~~v~l~V-~~p~  228 (248)
T 3pv7_A          188 SCLKLNSSQEDPGTVYQCVVRHASLHTPLRSNFTLTA-ARHS  228 (248)
T ss_dssp             EEEECC--CCCTTCEEEEEEECTTCSSCEEEEECC-------
T ss_pred             EEEEEcCccccCCCEEEEEEECCCCCCCcEEEEEEEE-cCCC
Confidence            46899999999999999999998775 4556778888 3443

>1mqk_L Antibody 7E2 FV fragment, light chain; membrane protein, cytochrome C oxidase, high- resolution structure, immune system; 1.28A {Mus musculus} SCOP: b.1.1.1 PDB: 1ar1_D 3ehb_D* 3hb3_D* 1qle_L* 1f6l_L 3iy2_A 1vfa_A 1dvf_A 1kir_A 1g7i_A 1g7j_A 1a2y_A 1kip_A 1kiq_A 1vfb_A 1g7h_A 1a7o_L 1g7l_A 1g7m_A 1a7n_L ...

Probab=98.19  E-value=1.6e-06  Score=50.49  Aligned_cols=37  Identities=19%  Similarity=0.200  Sum_probs=29.5

Q ss_pred             CEEEEcccCCCCCeeeEEEeEeCC-CcccceeEEEEEE
Q psy7035          21 QSLVLQNVSRARAGHYTCVGSNGE-GDGQSNAQKTAYD   57 (70)
Q Consensus        21 ~tL~i~~v~~~D~G~Y~C~a~N~~-G~~~s~~~~L~V~   57 (70)
                      .+|+|.+++.+|+|.|.|.+.|.. ......-..|.|.
T Consensus        71 ~~L~I~~v~~~DsG~Y~C~~~~~~~~~~fg~gt~L~V~  108 (120)
T 1mqk_L           71 FSLKINSLLPEDFGSYYCQHHYGTPPLTFGGGTKLEIK  108 (120)
T ss_dssp             EEEEESSCCGGGCEEEEEEECSSSSSCCBCCCEEEEEC
T ss_pred             EEEEECCCCHHHCEEEEEEEEeCCCceEECCCeEEEEe
Confidence            479999999999999999999864 3334455688886

>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus}

Probab=98.19  E-value=8.2e-07  Score=55.87  Aligned_cols=33  Identities=18%  Similarity=0.363  Sum_probs=26.8

Q ss_pred             CEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEE
Q psy7035          21 QSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAY   56 (70)
Q Consensus        21 ~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V   56 (70)
                      .+|.|.+++.+|+|.|+|.|+|.....   ++...+
T Consensus       219 ~~L~i~~~~~~d~G~Y~C~a~n~~~~~---~~~~~~  251 (254)
T 2c1o_A          219 STLTLTKDEYERHNSYTCEATHKTSTS---PIVKSF  251 (254)
T ss_dssp             EEEEEEHHHHHTCCEEEEEEECTTCSS---CEEEEE
T ss_pred             EEEEeccccccCCCeEEEEEEcCCCCC---cceEec
Confidence            479999999999999999999986532   455554

>1c5d_H Monoclonal antibody against the main immunogenic the human muscle acetylcholine receptor...; immunoglobulin, immune system; 2.40A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 2arj_H 3b9k_H* 2gk0_H 2gjz_H 1fn4_B 3mj8_H 3mj9_H*

Probab=98.18  E-value=2.2e-06  Score=53.19  Aligned_cols=37  Identities=11%  Similarity=0.118  Sum_probs=29.9

Q ss_pred             EEEEcccCCCCCeeeEEEeEeCCCc--ccceeEEEEEEe
Q psy7035          22 SLVLQNVSRARAGHYTCVGSNGEGD--GQSNAQKTAYDI   58 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N~~G~--~~s~~~~L~V~~   58 (70)
                      +|+|.+++.+|+|.|.|.+.|..|.  ..+..+.|.|..
T Consensus        79 ~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~L~V~~  117 (215)
T 1c5d_H           79 FLKMNSLQTEDTAIYFCTREDGWNYFDYWGPGTMVTVSS  117 (215)
T ss_dssp             EEEESSCCGGGCEEEEEEECCSSSCSCCBCCCEEEEECS
T ss_pred             EEEECCCCcccCEEEEEEEecCCcccceEcCCEEEEecC
Confidence            8999999999999999999997532  233457888873

>1oga_E TRBC1, T-cell receptor beta chain C region; immune system/receptor, immune system/receptor/complex, TCR, MHC, immunodominance, FLU, complex; 1.40A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 2vlm_E 2vlk_E 2vlj_E 2vlr_E 2xna_B 2xn9_B 2axh_A 2axj_A 3scm_D* 3sda_D* 3sdc_D* 3sdd_D* 3qi9_D* 3mff_B* 2ak4_E 3he7_D* 2eyr_B 3pqy_E 3kxf_E 2cde_B ...

Probab=98.18  E-value=2.2e-06  Score=54.41  Aligned_cols=38  Identities=11%  Similarity=0.186  Sum_probs=28.5

Q ss_pred             CEEEEcccCCCCCeeeEEEeEeCCC--cccceeEEEEEEe
Q psy7035          21 QSLVLQNVSRARAGHYTCVGSNGEG--DGQSNAQKTAYDI   58 (70)
Q Consensus        21 ~tL~i~~v~~~D~G~Y~C~a~N~~G--~~~s~~~~L~V~~   58 (70)
                      .+|.|.+++.+|+|.|.|.+.|..+  ........|.|..
T Consensus        76 ~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~  115 (252)
T 1oga_E           76 FPLTVTSAQKNPTAFYLCASSSRSSYEQYFGPGTRLTVTE  115 (252)
T ss_dssp             CCEEECSCCSCCCEEEEEEEESSTTSCCEECCCEEEEEES
T ss_pred             EEEEECcCChhhCEEEEEEEecCCccceeECCCEEEEEec
Confidence            5899999999999999999999621  1112345678774

>1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1

Probab=98.18  E-value=7.6e-07  Score=56.65  Aligned_cols=39  Identities=13%  Similarity=0.162  Sum_probs=30.7

Q ss_pred             CEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeCC
Q psy7035          21 QSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGL   60 (70)
Q Consensus        21 ~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~p   60 (70)
                      .+|+|.+++.+|+|.|+|.|.|.. ...+....|.|...+
T Consensus       209 ~~L~I~~v~~~D~G~Y~C~a~n~~-~~~g~gt~l~V~~~~  247 (257)
T 1f3r_B          209 YTLTISSLQPEDVATYFCYQYNNG-YTFGAGTKLELKAAE  247 (257)
T ss_dssp             EEEEECSCCGGGCSEEEEEEESSS-EEECCCCEECCSSSC
T ss_pred             EEEEECCCChhhCEEEEEEEeCCC-CeECCCEEEEEeCCC
Confidence            379999999999999999999975 334445678776444

>3bae_H WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} SCOP: b.1.1.2 PDB: 3bkc_H 3bkj_H 3bkm_H 3mck_H 2r0w_H* 2iqa_H 2iq9_H 1ggi_H 1ggb_H 1ggc_H 3eys_H* 2ipt_H 2ipu_H 3eyu_H* 2r0z_H* 3rkd_H 1r0a_H* 1n5y_H* 1n6q_H* 1t03_H* ...

Probab=98.18  E-value=1.3e-06  Score=54.62  Aligned_cols=38  Identities=13%  Similarity=0.132  Sum_probs=30.4

Q ss_pred             CEEEEcccCCCCCeeeEEEeEeCCC------c--ccceeEEEEEEe
Q psy7035          21 QSLVLQNVSRARAGHYTCVGSNGEG------D--GQSNAQKTAYDI   58 (70)
Q Consensus        21 ~tL~i~~v~~~D~G~Y~C~a~N~~G------~--~~s~~~~L~V~~   58 (70)
                      .+|.|.+++.+|+|.|.|.+.|..|      .  ..+..+.|.|..
T Consensus        80 ~~L~I~~v~~~D~G~Y~C~~~~~~g~~~~~~~~~~~~~~~~L~V~~  125 (228)
T 3bae_H           80 VFMKITSVDTADTATYYCARRGFYGRKYEVNHFDYWGQGTTLTVSS  125 (228)
T ss_dssp             EEEEECSCCGGGCEEEEEEEEEESTTCTTSEEEEEECCCEEEEECS
T ss_pred             EEEEEcCCCcccCEEEEEEEecCCCccccccceeeeCCcEEEEecC
Confidence            5899999999999999999999765      1  223347888874

>1i8k_A Epidermal growth factor receptor antibody MR1SCFV light chain; antibody-peptide complex, immunoglobulin fold, type II' beta turn., immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 PDB: 1i8i_A

Probab=98.17  E-value=1.3e-06  Score=49.51  Aligned_cols=22  Identities=23%  Similarity=0.478  Sum_probs=21.0

Q ss_pred             EEEEcccCCCCCeeeEEEeEeC
Q psy7035          22 SLVLQNVSRARAGHYTCVGSNG   43 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N~   43 (70)
                      +|+|.+++.+|+|.|.|.+.|.
T Consensus        72 ~L~I~~v~~~DsG~Y~C~~~~~   93 (107)
T 1i8k_A           72 VFTIENTLSEDVGDYYCLQSFN   93 (107)
T ss_dssp             EEEESSCCGGGCEEEEEEECSS
T ss_pred             EEEECCCCHHHCEEEEEEEeeC
Confidence            7999999999999999999986

>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L*

Probab=98.17  E-value=4.2e-07  Score=55.61  Aligned_cols=45  Identities=7%  Similarity=0.186  Sum_probs=31.3

Q ss_pred             cccCeEcCcCcc-------ceEEecCCEEEEcccCCCCCeeeEEEeEeCCCc
Q psy7035           2 SFSNVQLYNNIS-------AGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGD   46 (70)
Q Consensus         2 ~~ng~~l~~~~~-------~~~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~   46 (70)
                      ++||+++..+..       .......++|+|.+++.+|+|.|+|.|+|..+.
T Consensus       151 ~k~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~  202 (213)
T 3mj8_L          151 EADGTPITQGVKTTQPSKSDSKYMATSYLTMTADAWKSRNTFICKVTHGGNT  202 (213)
T ss_dssp             EETTEEECTTEEECCCEEETTEEEEEEEEEEESHHHHSCSCEEEEEEETTEE
T ss_pred             EcCCcccCCCcccCCcCccCCcEEEEEEEEEeHHHcCCCCEEEEEEEECCcc
Confidence            577887754210       011112356999999999999999999998653

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A

Probab=98.17  E-value=2.7e-06  Score=52.85  Aligned_cols=33  Identities=9%  Similarity=0.196  Sum_probs=25.0

Q ss_pred             CCEEEEcccCCCCCeeeEEEeEeCCCcccceeEE
Q psy7035          20 NQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQK   53 (70)
Q Consensus        20 ~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~   53 (70)
                      +.+|.+.. +++|+|.|+|.|+|.+|...+.++.
T Consensus       145 ~~~i~~~~-~~~d~G~Y~C~a~N~~~~~~s~~~~  177 (182)
T 1hnf_A          145 QRVITHKW-TTSLSAKFKCTAGNKVSKESSVEPV  177 (182)
T ss_dssp             SSCEEEEC-CSCEEEEEEEEEECSSCEEEEEEEE
T ss_pred             CcEEEEec-ccCCCcEEEEEEEeCCCCcEEccee
Confidence            34555544 5899999999999999987776543

>1qfw_M FV, antibody (anti beta subunit) (light chain); glycoprotein hormone; HET: NAG; 3.50A {Mus musculus} SCOP: b.1.1.1

Probab=98.16  E-value=1.7e-06  Score=49.06  Aligned_cols=22  Identities=18%  Similarity=0.394  Sum_probs=21.1

Q ss_pred             EEEEcccCCCCCeeeEEEeEeC
Q psy7035          22 SLVLQNVSRARAGHYTCVGSNG   43 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N~   43 (70)
                      +|+|.+++.+|+|.|.|.+.|.
T Consensus        72 ~L~I~~v~~~DsG~Y~C~~~~~   93 (108)
T 1qfw_M           72 TLTISSVQAEDFADYHCGQTYN   93 (108)
T ss_dssp             EEEESSCCTTCCSEEEEEECSS
T ss_pred             EEEECCCChhhCEEEEEEEccC
Confidence            7999999999999999999986

>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus}

Probab=98.16  E-value=2e-06  Score=54.69  Aligned_cols=38  Identities=18%  Similarity=0.156  Sum_probs=30.5

Q ss_pred             CEEEEcccCCCCCeeeEEEeEeCCCcc---cceeEEEEEEe
Q psy7035          21 QSLVLQNVSRARAGHYTCVGSNGEGDG---QSNAQKTAYDI   58 (70)
Q Consensus        21 ~tL~i~~v~~~D~G~Y~C~a~N~~G~~---~s~~~~L~V~~   58 (70)
                      .+|+|.+++.+|+|.|+|.|.|..+..   .+..+.|.|..
T Consensus        76 ~sL~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~l~V~~  116 (256)
T 3tf7_C           76 FHLRKASVHRSDSAVYFCAVSAKGTGSKLSFGKGAKLTVSP  116 (256)
T ss_dssp             EEEEESSCCGGGCSEEEEEEECTTCTTCEEECCCEEEEEEC
T ss_pred             EEEEECCCCcccCEEEEEEEecCCCccceEECCCeEEEEeC
Confidence            479999999999999999999986532   23456788874

>4ffy_L DENV1-E111 single chain variable fragment (light; viral envelope proteins, structural genomics, antibody epito flavivirus, niaid; 2.50A {Mus musculus}

Probab=98.16  E-value=2.1e-06  Score=50.16  Aligned_cols=39  Identities=21%  Similarity=0.255  Sum_probs=31.5

Q ss_pred             EEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeCC
Q psy7035          22 SLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGL   60 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~p   60 (70)
                      +|+|.+++.+|+|.|.|.+.|........-..|.|.-.+
T Consensus        76 sL~I~~v~~~DsG~Y~C~~~~~~~~~fg~gT~L~V~~~g  114 (126)
T 4ffy_L           76 TLTIDSVETDDAATYYCQQNNEDPYTFGGGTKLEIKGGG  114 (126)
T ss_dssp             EEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEEC--
T ss_pred             EEEECCCCHHHCEEEEEEEecCCCcEECCCEEEEEecCC
Confidence            799999999999999999999755555566889988543

>3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA, IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB: 3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A

Probab=98.16  E-value=1.7e-06  Score=54.67  Aligned_cols=36  Identities=17%  Similarity=0.146  Sum_probs=31.1

Q ss_pred             EEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEE
Q psy7035          22 SLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYD   57 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~   57 (70)
                      +|+|.+++.+|+|.|+|.|.|.....-..-..|.|.
T Consensus       213 ~L~I~~v~~~D~G~Y~C~~~~~~~~~fg~gt~l~v~  248 (257)
T 3gkz_A          213 SLTISSMEAEDAASYFCHQWSSFPFTFGSGTKLEIK  248 (257)
T ss_dssp             EEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEC
T ss_pred             EEEECCCChHHCEEEEEEEccCCceEEcCCEEEEEE
Confidence            699999999999999999999766556666788887

>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A

Probab=98.15  E-value=1.5e-06  Score=54.01  Aligned_cols=37  Identities=11%  Similarity=0.100  Sum_probs=27.5

Q ss_pred             CEEEEcccCCCCCeeeEEEeEeCCCc--ccceeEEEEEE
Q psy7035          21 QSLVLQNVSRARAGHYTCVGSNGEGD--GQSNAQKTAYD   57 (70)
Q Consensus        21 ~tL~i~~v~~~D~G~Y~C~a~N~~G~--~~s~~~~L~V~   57 (70)
                      .+|+|.+++.+|+|.|+|.|.|..+.  .......|.|.
T Consensus       199 ~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~g~gt~l~V~  237 (238)
T 2p1y_A          199 LSLHIADSQPGDSATYFCAAIDTNAYKVIFGKGTHLHVL  237 (238)
T ss_dssp             EEEEETTCCGGGCEEEEEEEEETTTTEEEECCCEEEEEE
T ss_pred             EEEEEcCCCHHHCEEEEEEEeeCCCCeEEECCCEEEEEe
Confidence            48999999999999999999998421  12223456653

>3m8o_H Immunoglobulin A1 heavy chain; immunoglobulin fold, immune system; 1.55A {Homo sapiens} PDB: 3qnx_B 3qny_B

Probab=98.14  E-value=3.9e-06  Score=51.93  Aligned_cols=36  Identities=11%  Similarity=0.146  Sum_probs=29.2

Q ss_pred             EEEEcccCCCCCeeeEEEeEeCC-CcccceeEEEEEE
Q psy7035          22 SLVLQNVSRARAGHYTCVGSNGE-GDGQSNAQKTAYD   57 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N~~-G~~~s~~~~L~V~   57 (70)
                      +|.|.+++.+|+|.|.|.+.|.. +...+....|.|.
T Consensus        82 sL~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~l~V~  118 (221)
T 3m8o_H           82 FLQMNSLKSDDTAMYYCVIRGDVYNRQWGQGTLVTVS  118 (221)
T ss_dssp             EEEECSCCGGGCEEEEEEEESCTTCCCBBCCEEEEEC
T ss_pred             EEEECCCCHHHCEEEEEEEECCChhheECCCEEEEEe
Confidence            69999999999999999999974 2334555678886

>3u6r_L Antibody 1:7 (light chain); IG-like domain, neutralizing single chain FV, immune system; 2.67A {Homo sapiens}

Probab=98.14  E-value=1.5e-06  Score=52.64  Aligned_cols=44  Identities=11%  Similarity=0.084  Sum_probs=28.9

Q ss_pred             CEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeCCCCCCC
Q psy7035          21 QSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGLGIPAE   65 (70)
Q Consensus        21 ~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~p~~~~~   65 (70)
                      -+|+|.+++.+|+|.|.|.+.+.. .....-..|.|.-.+..|.+
T Consensus        70 ~sL~I~~l~~~DsG~Y~C~~~~~~-~~fg~gt~L~V~~~~~~p~p  113 (143)
T 3u6r_L           70 FTLTISNLEPEDFAVYYCQQRSDW-VTFGGGTKVEIKAAADDDDK  113 (143)
T ss_dssp             EEEEECSCCGGGCEEEEEEECSSB-CEECCCEEEEEC--------
T ss_pred             EEEEEccCcccCCEEEEEEEecCC-CEECCCEEEEECCCCCCCCC
Confidence            379999999999999999998764 33344577888754444433

>1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H

Probab=98.13  E-value=1.9e-06  Score=55.12  Aligned_cols=37  Identities=16%  Similarity=0.182  Sum_probs=31.6

Q ss_pred             CEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEE
Q psy7035          21 QSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYD   57 (70)
Q Consensus        21 ~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~   57 (70)
                      .+|+|.+++.+|+|.|+|.|.|..+...+....|.|.
T Consensus       196 ~~L~I~~v~~~DsG~Y~C~a~~~~~~~fg~gt~l~V~  232 (256)
T 1nqb_A          196 FTLKISRVEAEDLGVYYCFQGSHVPYTFGGGTKLEIK  232 (256)
T ss_dssp             EEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEC
T ss_pred             EEEEECCCChHHCEEEEEEEccCCceEECCCEEEEEE
Confidence            4799999999999999999999765556667788886

>1ypz_E T cell receptor delta, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=98.12  E-value=3.8e-06  Score=52.39  Aligned_cols=46  Identities=15%  Similarity=0.257  Sum_probs=33.0

Q ss_pred             CEEEEcccCCCCCeeeEEEeEeCCCc----------ccceeEEEEEEeCCCCCCCC
Q psy7035          21 QSLVLQNVSRARAGHYTCVGSNGEGD----------GQSNAQKTAYDIGLGIPAEP   66 (70)
Q Consensus        21 ~tL~i~~v~~~D~G~Y~C~a~N~~G~----------~~s~~~~L~V~~~p~~~~~p   66 (70)
                      .+|+|.+++.+|+|.|.|.+.|..+.          .......|.|...+..+.+|
T Consensus        71 ~~L~I~~v~~~D~G~Y~C~~~~~~~~~p~~~~~~~~~~~~~t~L~V~~~~~~~~~P  126 (207)
T 1ypz_E           71 STLHIRDAQLEDSGTYFCAADTWHISEGYELGTDKLVFGQGTQVTVEPKSQPPAKP  126 (207)
T ss_dssp             EEEEECSCCGGGCEEEEEEEECBCCCTTCCCCCCCCEECCCEEEEEECCCCCCCCC
T ss_pred             EEEEECCCCHHHCEEEEEEEecCCcccccccccceeeecCccEEEEccCCCCCCCC
Confidence            48999999999999999999987431          12234688888543334444

>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1

Probab=98.12  E-value=1.6e-06  Score=58.07  Aligned_cols=27  Identities=22%  Similarity=0.406  Sum_probs=24.7

Q ss_pred             CEEEEcccCCCCCeeeEEEeEeCCCcc
Q psy7035          21 QSLVLQNVSRARAGHYTCVGSNGEGDG   47 (70)
Q Consensus        21 ~tL~i~~v~~~D~G~Y~C~a~N~~G~~   47 (70)
                      ++|.|.+++.+|+|.|+|.|.|..|..
T Consensus       181 ~~L~i~~~~~~d~G~Y~C~a~n~~~~~  207 (438)
T 1qgc_4          181 STLTLTKDEYERHNSYTCEATHKTSTS  207 (438)
T ss_dssp             EEEEEEHHHHHTCCEEEEEEEETTCSS
T ss_pred             EEEEEeCcccCCCCeEEEEEEecccCC
Confidence            479999999999999999999998864

>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus}

Probab=98.11  E-value=1.4e-06  Score=55.40  Aligned_cols=37  Identities=22%  Similarity=0.282  Sum_probs=29.0

Q ss_pred             CEEEEcccCCCCCeeeEEEeEeCCCccc-ceeEEEEEE
Q psy7035          21 QSLVLQNVSRARAGHYTCVGSNGEGDGQ-SNAQKTAYD   57 (70)
Q Consensus        21 ~tL~i~~v~~~D~G~Y~C~a~N~~G~~~-s~~~~L~V~   57 (70)
                      .+|+|.+++.+|+|.|+|.|+|..|... ..-..|.|.
T Consensus       210 ~~L~I~~v~~~DsG~Y~C~a~n~~g~~~fG~gt~l~v~  247 (256)
T 3tf7_C          210 FFLTLESASPSQTSLYFCASSDAPGQLYFGEGSKLTVL  247 (256)
T ss_dssp             CEEEESSCCGGGCEEEEEEEEEETTEEEECCCEEEEEE
T ss_pred             EEEEECCCCHHHCEEEEEEecCCCCccEECCCeEEEEE
Confidence            4899999999999999999999877432 223456665

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus}

Probab=98.11  E-value=2.9e-06  Score=52.07  Aligned_cols=29  Identities=10%  Similarity=0.195  Sum_probs=23.3

Q ss_pred             cCCEEEEcccCCCCCeeeEEEeEeCCCcccc
Q psy7035          19 SNQSLVLQNVSRARAGHYTCVGSNGEGDGQS   49 (70)
Q Consensus        19 ~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s   49 (70)
                      .+.+|.+..  ++|+|.|+|.|+|.+|...+
T Consensus       145 ~~~~l~~~~--~~d~g~Y~C~a~N~~~~~~~  173 (180)
T 2dru_A          145 RQKTMSYQW--TNLRAPFKCKAVNRVSQESE  173 (180)
T ss_dssp             SSSEEEEEC--SCCSSCEEEEEEETTEEEEE
T ss_pred             CCCEEEEEE--hhcCccEEEEEecCcCcccc
Confidence            456777743  89999999999999987544

>1j05_L T84.66 antibody, anti-CEA MAB T84.66, light chain; immunoglobulin, immune system; 1.50A {Mus musculus} SCOP: b.1.1.1 PDB: 1qfw_L* 1qnz_L 3iy3_A 3iy4_A

Probab=98.11  E-value=2.1e-06  Score=48.85  Aligned_cols=22  Identities=23%  Similarity=0.508  Sum_probs=21.0

Q ss_pred             EEEEcccCCCCCeeeEEEeEeC
Q psy7035          22 SLVLQNVSRARAGHYTCVGSNG   43 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N~   43 (70)
                      +|+|.+++.+|+|.|.|.+.|.
T Consensus        76 ~L~I~~v~~~DsG~Y~C~~~~~   97 (111)
T 1j05_L           76 TLIIDPVEADDVATYYCQQTNE   97 (111)
T ss_dssp             EEEESSCCGGGCEEEEEEECSS
T ss_pred             EEEECCCCcccCEEEEEEEecC
Confidence            7999999999999999999985

>3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA, IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB: 3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A

Probab=98.11  E-value=2.6e-06  Score=53.85  Aligned_cols=38  Identities=18%  Similarity=0.197  Sum_probs=28.9

Q ss_pred             EEEEcccCCCCCeeeEEEeEeCCCc---ccceeEEEEEEeC
Q psy7035          22 SLVLQNVSRARAGHYTCVGSNGEGD---GQSNAQKTAYDIG   59 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N~~G~---~~s~~~~L~V~~~   59 (70)
                      +|+|.+++.+|+|.|+|.|.|..+.   ..+..+.|.|...
T Consensus        87 ~L~I~~v~~~DsG~Y~C~~~n~~~~~~~~~~~~~~l~V~~~  127 (257)
T 3gkz_A           87 YLQLKSVSSEDTATYYCSYFDSDDYAMEYWGQGTSVTVSGG  127 (257)
T ss_dssp             EEEECSCCGGGCEEEEEEEECTTCTTCEEECCCEEEEEC--
T ss_pred             EEEECCCChhhCEEEEEEEecCCCcceeEEcCCEEEeecCc
Confidence            7999999999999999999997322   2344577888754

>1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex (immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=98.11  E-value=3.9e-07  Score=55.86  Aligned_cols=26  Identities=12%  Similarity=0.101  Sum_probs=23.6

Q ss_pred             CEEEEcccCCCCCeeeEEEeEeCCCc
Q psy7035          21 QSLVLQNVSRARAGHYTCVGSNGEGD   46 (70)
Q Consensus        21 ~tL~i~~v~~~D~G~Y~C~a~N~~G~   46 (70)
                      ++|.|.+++.+|+|.|+|.|.|..+.
T Consensus       176 s~L~i~~~~~~d~G~Y~C~a~n~~~~  201 (212)
T 1nfd_E          176 SYLSLTADQWKSHNRVSCQVTHEGET  201 (212)
T ss_dssp             EBCCEEHHHHHTCSCEEEEEECTTTT
T ss_pred             EEEEEchhhcCCCCeEEEEEEeCCce
Confidence            56999999999999999999998764

>3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens}

Probab=98.10  E-value=2.7e-06  Score=53.87  Aligned_cols=38  Identities=16%  Similarity=0.184  Sum_probs=30.2

Q ss_pred             EEEEcccCCCCCeeeEEEeEeC-----------CCcccceeEEEEEEeC
Q psy7035          22 SLVLQNVSRARAGHYTCVGSNG-----------EGDGQSNAQKTAYDIG   59 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N~-----------~G~~~s~~~~L~V~~~   59 (70)
                      +|+|.+++.+|+|.|.|.|.|.           .....+....|.|...
T Consensus        86 ~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~  134 (256)
T 3juy_B           86 YMELRSLRSADTAVYYCARVGEWGWDDSPYDNYYMDVWGKGTTVIVSSG  134 (256)
T ss_dssp             EEEECSCCGGGCEEEEEEECCCCCTTCCTTTTCSCCEECCCEEEEECSC
T ss_pred             EEEECCCCcccCEEEEEeEEeccccccccccccceeEECCceEEeecCC
Confidence            6999999999999999999997           2233344677888754

>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L*

Probab=98.10  E-value=1.8e-06  Score=52.88  Aligned_cols=25  Identities=20%  Similarity=0.296  Sum_probs=22.7

Q ss_pred             EEEEcccCCCCCeeeEEEeEeCCCc
Q psy7035          22 SLVLQNVSRARAGHYTCVGSNGEGD   46 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N~~G~   46 (70)
                      +|.|.+++.+|+|.|+|.|.|....
T Consensus       177 ~L~i~~~~~~d~G~Y~C~a~n~~~~  201 (210)
T 1lk3_L          177 TLSLTKADYESHNLYTCEVVHKTSS  201 (210)
T ss_dssp             EEEEEHHHHHTCCEEEEEEECTTCS
T ss_pred             EEEEChHHhccCCcEEEEEEecCCC
Confidence            7999999999999999999997553

>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=98.09  E-value=3.1e-06  Score=57.27  Aligned_cols=38  Identities=11%  Similarity=0.116  Sum_probs=31.2

Q ss_pred             CEEEEcccCCCCCeeeEEEeEeCCCc--ccceeEEEEEEe
Q psy7035          21 QSLVLQNVSRARAGHYTCVGSNGEGD--GQSNAQKTAYDI   58 (70)
Q Consensus        21 ~tL~i~~v~~~D~G~Y~C~a~N~~G~--~~s~~~~L~V~~   58 (70)
                      .+|.|.+++.+|+|.|+|.|.|..|.  ..+..+.|.|..
T Consensus        79 ~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~  118 (444)
T 1igt_B           79 LYLQMSRLKSEDTAMYYCARHGGYYAMDYWGQGTTVTVSS  118 (444)
T ss_dssp             EEEEECSCCGGGCEEEEEEEECSSSCEEEEBCCEEEEECS
T ss_pred             EEEEECCCCHHHCEEEEEEEecCCcccccccCcEEEEecC
Confidence            48999999999999999999998665  234457888863

>1xiw_B T-cell surface glycoprotein CD3 delta chain; CD3-epsilon, CD3-delta, UCHT1-SCFV, immunoglobulin fold, antibody-antigen complex; 1.90A {Homo sapiens} SCOP: b.1.1.4

Probab=98.09  E-value=1.8e-06  Score=48.46  Aligned_cols=38  Identities=21%  Similarity=0.203  Sum_probs=25.3

Q ss_pred             cCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeC
Q psy7035          19 SNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIG   59 (70)
Q Consensus        19 ~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~   59 (70)
                      .+++|.|.++.+.++|.|+|.++|..|...|   .|.|+|+
T Consensus        33 ~~~tL~L~~~~~d~sG~Y~C~~~~~~~~~~s---~LqV~yR   70 (79)
T 1xiw_B           33 DITRLDLGKRILDPRGIYRCNGTDIYKDKES---TVQVHYR   70 (79)
T ss_dssp             GGTEEEEEEGGGCCEEEEEEC--------CE---EEEEEEE
T ss_pred             cCCeEEeccCcCCCCeEEEecCCCCCCcccE---EEEEEhh
Confidence            4689999999999999999999999886655   5777764

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...

Probab=98.08  E-value=1.4e-06  Score=52.42  Aligned_cols=33  Identities=12%  Similarity=0.162  Sum_probs=27.2

Q ss_pred             CEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEe
Q psy7035          21 QSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDI   58 (70)
Q Consensus        21 ~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~   58 (70)
                      .+|.|.+++.+|+|.|+|.|.|..|     .+.|.|.+
T Consensus        68 ~~L~i~~v~~~D~G~Y~C~~~~~~~-----~~~l~V~~  100 (184)
T 2ny1_B           68 FPLIIKNLKIEDSDTYICEVEDQKE-----EVQLLVFG  100 (184)
T ss_dssp             CCEEECSCCGGGCEEEEEEETTEEE-----EEEEEEEE
T ss_pred             EEEEEecCCHHHCEEEEEEEEcCCC-----cEEEEEEE
Confidence            3599999999999999999999754     45666663

>1u9k_A Triggering receptor expressed on myeloid cells 1; activating receptors, TREM-1, innate immunity, immune system receptor, immune system; 1.76A {Mus musculus} SCOP: b.1.1.1

Probab=98.08  E-value=4.4e-06  Score=47.91  Aligned_cols=35  Identities=14%  Similarity=0.252  Sum_probs=28.4

Q ss_pred             EEEEcccCCCCCeeeEEEeEeCCCcc--cceeEEEEE
Q psy7035          22 SLVLQNVSRARAGHYTCVGSNGEGDG--QSNAQKTAY   56 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N~~G~~--~s~~~~L~V   56 (70)
                      +|+|.+++.+|+|.|.|.+.+..+..  ....++|.|
T Consensus        77 ~L~I~~~~~~Dsg~Y~C~~~~~~~~~~~~~~~i~L~V  113 (114)
T 1u9k_A           77 QVQMTDLQVTDSGLYRCVIYHPPNDPVVLFHPVRLVV  113 (114)
T ss_dssp             EEEECSCCGGGCEEEEEEEECTTSCCEECSCCEEEEE
T ss_pred             EEEECCCChHHCEEEEEEEecCCCCceeeeceEEEEE
Confidence            79999999999999999999976432  345677766

>1pew_A JTO2, A lambda-6 type immunoglobulin light chain, domain; beta sheet, immune system; 1.60A {Homo sapiens} SCOP: b.1.1.1 PDB: 1cd0_A 1pw3_A 2cd0_A 2w0k_A 3b5g_A 3bdx_A* 2w0l_A

Probab=98.07  E-value=3.8e-06  Score=47.67  Aligned_cols=22  Identities=18%  Similarity=0.440  Sum_probs=21.0

Q ss_pred             EEEEcccCCCCCeeeEEEeEeC
Q psy7035          22 SLVLQNVSRARAGHYTCVGSNG   43 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N~   43 (70)
                      +|+|.+++.+|+|.|.|.+.|.
T Consensus        73 ~L~I~~v~~~DsG~Y~C~~~~~   94 (109)
T 1pew_A           73 SLTISGLKTEDEADYYCQSYDA   94 (109)
T ss_dssp             EEEECSCCGGGCEEEEEEEEET
T ss_pred             EEEECCCChhhCEEEEEEEEeC
Confidence            7999999999999999999985

>2pnd_A V-SET and immunoglobulin domain containing 4; complement receptor, IG-like domain, immune system; 1.00A {Mus musculus} PDB: 2icc_A 2ice_S* 2icf_S*

Probab=98.07  E-value=6.1e-06  Score=47.52  Aligned_cols=37  Identities=19%  Similarity=0.279  Sum_probs=27.3

Q ss_pred             CCEEEEcccCCCCCeeeEEEeEe--CCCcccce--eEEEEE
Q psy7035          20 NQSLVLQNVSRARAGHYTCVGSN--GEGDGQSN--AQKTAY   56 (70)
Q Consensus        20 ~~tL~i~~v~~~D~G~Y~C~a~N--~~G~~~s~--~~~L~V   56 (70)
                      +.+|+|.+++.+|+|.|.|...+  ..|.....  .+.|.|
T Consensus        77 ~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~~~~~~~~L~V  117 (119)
T 2pnd_A           77 DVSLQINTLQMDDRNHYTCEVTWQTPDGNQVIRDKIIELRV  117 (119)
T ss_dssp             BCCEEESSCCGGGCEEEEEEEEEECTTSCEEEEEEEEEEEE
T ss_pred             CEEEEEccCCcccCEEEEEEEEECcCCCCeEEEEEEEEEEE
Confidence            35899999999999999999988  44443333  344544

>3fku_X Neutralizing antibody F10; influenza, hemagglutinin, SCFV, F membrane, envelope protein, fusion protein, membrane, trans virion; HET: NAG BMA; 3.20A {Homo sapiens}

Probab=98.07  E-value=1.9e-06  Score=55.76  Aligned_cols=38  Identities=13%  Similarity=0.097  Sum_probs=29.3

Q ss_pred             EEEEcccCCCCCeeeEEEeEeCC--CcccceeEEEEEEeC
Q psy7035          22 SLVLQNVSRARAGHYTCVGSNGE--GDGQSNAQKTAYDIG   59 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N~~--G~~~s~~~~L~V~~~   59 (70)
                      +|+|.+++.+|+|.|.|.+.|..  ....+....|.|...
T Consensus       212 ~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~g~~t~l~V~~~  251 (280)
T 3fku_X          212 SLTITGLQPEDEADYYCSTWDSSLSAVVFGGGTKLTVLGQ  251 (280)
T ss_dssp             EEEECSCCGGGCSEEEEEEEETTTTEEEEBCCCEEEEC--
T ss_pred             EEEECCCCHHHCEEEEEEEecCCCCceEECCCEEEEECCC
Confidence            59999999999999999999986  233445567888643

>3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D, mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo sapiens}

Probab=98.07  E-value=8.3e-06  Score=51.69  Aligned_cols=44  Identities=18%  Similarity=0.073  Sum_probs=32.0

Q ss_pred             EEEcccCCCCCeeeEEEeEeCCCc-----ccceeEEEEEEeCCCCCCCC
Q psy7035          23 LVLQNVSRARAGHYTCVGSNGEGD-----GQSNAQKTAYDIGLGIPAEP   66 (70)
Q Consensus        23 L~i~~v~~~D~G~Y~C~a~N~~G~-----~~s~~~~L~V~~~p~~~~~p   66 (70)
                      |.|.+++.+|+|.|.|.+.|..+.     .......|.|...+....+|
T Consensus        76 L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~t~l~V~~~~~~~~~P  124 (253)
T 3to4_D           76 LRLQVANMSQGRTLYCTSSADHWTNTGQLYFGEGSKLTVLEDLKNVFPP  124 (253)
T ss_dssp             CEEEEESCSSCEEEEEEEECSCCSTTCCEEECCCEEEEEESCSTTCBCC
T ss_pred             EEEccCChhhCeEEEEEEecCCCCcccceEECCCEEEEEecCCCCCCCC
Confidence            999999999999999999986541     22334578887544444444

>3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D

Probab=98.06  E-value=1.9e-06  Score=54.55  Aligned_cols=37  Identities=11%  Similarity=0.144  Sum_probs=29.3

Q ss_pred             EEEEcccCCCCCeeeEEEeEeCCC---cccceeEEEEEEe
Q psy7035          22 SLVLQNVSRARAGHYTCVGSNGEG---DGQSNAQKTAYDI   58 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N~~G---~~~s~~~~L~V~~   58 (70)
                      +|+|.+++.+|+|.|.|.|.|..+   ...+..+.|.|..
T Consensus        82 ~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~L~V~~  121 (256)
T 3umt_A           82 YLELRSLTSEDSAVYYCARDDRYPAWFAYWGQGTTVTVSS  121 (256)
T ss_dssp             EEEECSCCGGGCEEEEEEECCSTTCCSCEECCCEEEEECC
T ss_pred             EEEECCCCcccCEEEEEEEccCCCccccEECCCEEEEEcC
Confidence            599999999999999999999722   2234457888874

>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse IGG, zinc-finger, DNA-binding, RNA-binding, tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A

Probab=98.06  E-value=2.4e-06  Score=52.84  Aligned_cols=27  Identities=7%  Similarity=0.128  Sum_probs=24.6

Q ss_pred             CEEEEcccCCCCCeeeEEEeEeCCCcc
Q psy7035          21 QSLVLQNVSRARAGHYTCVGSNGEGDG   47 (70)
Q Consensus        21 ~tL~i~~v~~~D~G~Y~C~a~N~~G~~   47 (70)
                      .+|.|.+++.+|+|.|+|.|.|..|..
T Consensus        68 ~~L~I~~~~~~D~G~Y~C~a~~~~~~~   94 (207)
T 2vol_A           68 SELPIMHQDWLNGKEFKCRVNSAAFPA   94 (207)
T ss_dssp             EEEECCHHHHHTTCCEEEEEECTTCSS
T ss_pred             EEEEEehhHcCCCCEEEEEEEccCCCC
Confidence            479999999999999999999998853

>2ol3_A BM3.3 T-cell receptor alpha-chain; T cell receptor, class I MHC, H-2KBM8, TCR-PMHC complex, IMM system; HET: NAG; 2.90A {Mus musculus} SCOP: b.1.1.1

Probab=98.06  E-value=6.9e-06  Score=49.41  Aligned_cols=48  Identities=13%  Similarity=0.038  Sum_probs=28.5

Q ss_pred             CEEEEcccCCCCCeeeEEEeEeCCC-----cccceeEEEEEEeCCCCCCCCcc
Q psy7035          21 QSLVLQNVSRARAGHYTCVGSNGEG-----DGQSNAQKTAYDIGLGIPAEPLF   68 (70)
Q Consensus        21 ~tL~i~~v~~~D~G~Y~C~a~N~~G-----~~~s~~~~L~V~~~p~~~~~p~~   68 (70)
                      -+|+|.+++.+|+|.|.|.+.+..+     ..-..-..|.|.-..-.|.+|.|
T Consensus        74 ~sL~I~~~~~~Dsg~Y~C~~~~~~~~~~~~~~fg~GT~L~V~~~~~~~~~~~~  126 (142)
T 2ol3_A           74 IGLIITATQIEDSAVYFCAMRGDYGGSGNKLIFGTGTLLSVKPGSADDAKKDA  126 (142)
T ss_dssp             CCEEECSCCTTTCEEEEEEEECSSSSCSSCEEECCCEEEEEECCC--------
T ss_pred             EEEEECCCChhhCEEEEEEEEcCcCCcccccEECCCEEEEEecCCcCCCCccc
Confidence            3799999999999999999987321     11122357888744333444443

>1eeq_A Kappa-4 immunoglobulin (light chain); protein stability, hydrogen bonds, immune system; 1.50A {Homo sapiens} SCOP: b.1.1.1 PDB: 1eeu_A 1lve_A 2lve_A 3lve_A 5lve_A 4lve_A 1efq_A 1qac_A 1ek3_A 2imm_A 1mvu_A 2ap2_A 1ap2_A 3bd3_A* 3bd4_A* 3bd5_A* 2imn_A 3dus_A* 3duu_A* 3dv4_A* ...

Probab=98.05  E-value=4.3e-06  Score=47.75  Aligned_cols=35  Identities=11%  Similarity=0.171  Sum_probs=25.8

Q ss_pred             EEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEE
Q psy7035          22 SLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAY   56 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V   56 (70)
                      +|+|.+++.+|+|.|.|.+.|........-..|.|
T Consensus        78 ~L~I~~v~~~DsG~Y~C~~~~~~~~~fg~GT~l~V  112 (114)
T 1eeq_A           78 TLTISSLQAEDVAVYYCQQYYSHPYSFGQGTKLEI  112 (114)
T ss_dssp             EEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEE
T ss_pred             EEEECCCCcccCEEEEEEEeeCCeEEECCCEEEEE
Confidence            79999999999999999999863222223345555

>3bia_X T-cell immunoglobulin and mucin domain- containing protein 4; beta barrel, immunoglobulin fold, IGV domain, TIM, glycoprotein; HET: TLA; 2.20A {Mus musculus} PDB: 3bi9_X* 3bib_X*

Probab=98.05  E-value=7.6e-06  Score=46.76  Aligned_cols=40  Identities=20%  Similarity=0.242  Sum_probs=29.5

Q ss_pred             CEEEEcccCCCCCeeeEEEeEeCC-CcccceeEEEEEEeCC
Q psy7035          21 QSLVLQNVSRARAGHYTCVGSNGE-GDGQSNAQKTAYDIGL   60 (70)
Q Consensus        21 ~tL~i~~v~~~D~G~Y~C~a~N~~-G~~~s~~~~L~V~~~p   60 (70)
                      -+|+|.+++.+|+|.|.|.+...- .......+.|.|.-+|
T Consensus        73 ~sL~I~~v~~~Dsg~Y~C~v~~~~~~~~~~~~v~L~V~~~~  113 (116)
T 3bia_X           73 VSLTISNTNRGDSGVYCCRIEVPGWFNDVKKNVRLELRRAL  113 (116)
T ss_dssp             CCEEECSCCGGGCEEEEEEEECSSSSCCEEEEEEEEEECC-
T ss_pred             EEEEEccCChhHCEEEEEEEEcCCcccceEEEEEEEEecCC
Confidence            379999999999999999998532 1223456888887444

>1hxm_B Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=98.04  E-value=4.3e-06  Score=52.78  Aligned_cols=39  Identities=15%  Similarity=0.141  Sum_probs=30.3

Q ss_pred             CEEEEcccCCCCCeeeEEEeEeCCC-c-----ccceeEEEEEEeC
Q psy7035          21 QSLVLQNVSRARAGHYTCVGSNGEG-D-----GQSNAQKTAYDIG   59 (70)
Q Consensus        21 ~tL~i~~v~~~D~G~Y~C~a~N~~G-~-----~~s~~~~L~V~~~   59 (70)
                      .+|+|.+++.+|+|.|.|.+.|..+ .     ..+..+.|.|...
T Consensus        80 ~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~L~V~~~  124 (242)
T 1hxm_B           80 STLTIHNVEKQDIATYYCALWEAQQELGKKIKVFGPGTKLIITDK  124 (242)
T ss_dssp             EEEEECSCCGGGCEEEEEEEEEECSSTTCEEEEECCCEEEEEESS
T ss_pred             EEEEECCCCcccCEEEEEeeecCCccccccceeEcCcEEEEEccc
Confidence            4899999999999999999998631 1     1234578999864

>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2

Probab=98.04  E-value=2.4e-06  Score=56.28  Aligned_cols=37  Identities=11%  Similarity=0.088  Sum_probs=29.9

Q ss_pred             CEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEe
Q psy7035          21 QSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDI   58 (70)
Q Consensus        21 ~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~   58 (70)
                      .+|+|.+++.+|+|.|+|.|.|..+. .+..+.|.|..
T Consensus        79 ~~L~I~~v~~~D~G~Y~C~~~n~~~~-~~~~~~l~V~~  115 (344)
T 1za6_B           79 AYVELSSLRSEDTAVYFCTRSLNMAY-WGQGTLVTVSS  115 (344)
T ss_dssp             EEEEECSCCGGGCEEEEEEETTTTCE-ECCCEEEEECS
T ss_pred             EEEEECCCCcccCEEEEEEEecCcce-ecCcEEEEEec
Confidence            48999999999999999999995443 33457888873

>1dee_B IGM RF 2A2; FAB-IBP complex 2.7A resolution binding outside the antigen combining site superantigen FAB VH3 specificity; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1hez_B 1adq_H

Probab=98.04  E-value=3.9e-06  Score=52.42  Aligned_cols=38  Identities=8%  Similarity=0.045  Sum_probs=29.9

Q ss_pred             CEEEEcccCCCCCeeeEEEeEeCCC----c-ccceeEEEEEEe
Q psy7035          21 QSLVLQNVSRARAGHYTCVGSNGEG----D-GQSNAQKTAYDI   58 (70)
Q Consensus        21 ~tL~i~~v~~~D~G~Y~C~a~N~~G----~-~~s~~~~L~V~~   58 (70)
                      .+|.|.+++.+|+|.|.|.+.|..|    . .....+.|.|..
T Consensus        79 ~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~  121 (223)
T 1dee_B           79 LYLQMNSLRAEDTAVYYCAKVKFYDPTAPNDYWGQGTLVTVSS  121 (223)
T ss_dssp             EEEEECSCCGGGCEEEEEEEESSSSTTCCEEEECCCEEEEECS
T ss_pred             EEEEECCCCHHHCEEEEEEEeccccCcccceeecCcEEEEEcc
Confidence            3899999999999999999999764    1 123346888874

>3bj9_1 Immunoglobulin IOTA chain, immunoglobulin lambda- like polypeptide 1; immunoglobulin domain, beta sheet, polymorphism, immune system; 2.00A {Homo sapiens} PDB: 2h3n_A

Probab=98.03  E-value=5.7e-06  Score=47.22  Aligned_cols=36  Identities=8%  Similarity=0.087  Sum_probs=27.7

Q ss_pred             EEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEE
Q psy7035          22 SLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYD   57 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~   57 (70)
                      +|+|.+++.+|+|.|.|.+.+.....-..-..|.|.
T Consensus        78 sL~I~~~~~~DsG~Y~C~~~~~~~~~fg~gT~L~V~  113 (116)
T 3bj9_1           78 YLSISELQPEDEAMYYCAMGARSTHVFGSGTQLTVL  113 (116)
T ss_dssp             EEEECSCCGGGCEEEEEEECCSSCCEECCCEEEEEE
T ss_pred             EEEECCCChhHCEEEEEEEeCCCCcEECCCEEEEEe
Confidence            899999999999999999988643323334566665

>1i3g_L Antibody FV fragment; antibiotic; 2.44A {Mus musculus} SCOP: b.1.1.1 PDB: 3iy6_A

Probab=98.03  E-value=3.1e-06  Score=48.27  Aligned_cols=22  Identities=23%  Similarity=0.442  Sum_probs=21.0

Q ss_pred             EEEEcccCCCCCeeeEEEeEeC
Q psy7035          22 SLVLQNVSRARAGHYTCVGSNG   43 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N~   43 (70)
                      +|+|.+++.+|+|.|.|.+.|.
T Consensus        75 ~L~I~~v~~~DsG~Y~C~~~~~   96 (111)
T 1i3g_L           75 TLTISNVQSEDLADYFCQQYSS   96 (111)
T ss_dssp             EEEESSCCGGGCSEEEEEECSS
T ss_pred             EEEECCCCHHHCEEEEEEEecC
Confidence            7999999999999999999986

>1dlf_L Anti-dansyl immunoglobulin IGG2A(S); FV fragment; 1.45A {Mus musculus} SCOP: b.1.1.1 PDB: 1wz1_L* 2dlf_L 1maj_A 1mak_A 1ktr_L 2cju_L* 2uud_K* 1dsf_L 3nn8_B 1n4x_L 1bfv_L* 1cfv_L* 2bfv_L* 1wt5_C

Probab=98.03  E-value=4.5e-06  Score=47.63  Aligned_cols=35  Identities=20%  Similarity=0.201  Sum_probs=25.7

Q ss_pred             EEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEE
Q psy7035          22 SLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAY   56 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V   56 (70)
                      +|+|.+++.+|+|.|.|.+.|........-..|.|
T Consensus        77 ~L~I~~v~~~DsG~Y~C~~~~~~~~~fg~gT~l~V  111 (113)
T 1dlf_L           77 TLKISRVEAEDLGVYFCSQSTHVPFTFGSGTKLEI  111 (113)
T ss_dssp             EEEECSCCGGGCEEEEEEECSSSSCEECCCEEEEE
T ss_pred             EEEECCCChHHCEEEEEEEecCCCcEECCCEEEEE
Confidence            79999999999999999999863222223344554

>1nko_A Sialic acid binding IG-like lectin 7; immunoglobulin, siglec7, immune system; 1.45A {Homo sapiens} SCOP: b.1.1.1 PDB: 2g5r_A* 1o7v_A* 2df3_A* 1o7s_A* 2hrl_A*

Probab=98.02  E-value=7e-06  Score=47.79  Aligned_cols=38  Identities=13%  Similarity=0.126  Sum_probs=28.9

Q ss_pred             EEEEcccCCCCCeeeEEEeEeCCCc-cc-ceeEEEEEEeC
Q psy7035          22 SLVLQNVSRARAGHYTCVGSNGEGD-GQ-SNAQKTAYDIG   59 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N~~G~-~~-s~~~~L~V~~~   59 (70)
                      +|+|.+++.+|+|.|.|.+.+.... .. ...+.|.|...
T Consensus        89 sL~I~~v~~~DsG~Y~C~v~~~~~~~~~~~~~~~l~V~~~  128 (132)
T 1nko_A           89 TLSIRDARMSDAGRYFFRMEKGNIKWNYKYDQLSVNVTAL  128 (132)
T ss_dssp             CEEECSCCGGGCEEEEEEEEETTEEEECTTSCEEEEEECC
T ss_pred             EEEEcccCcccCeeEEEEEEcCCCcccccCCceEEEeccc
Confidence            8999999999999999999885311 11 33678888733

>2jju_A Signal regulatory protein beta-1; immunoglobulin domain, immunoglobulin superfamily, immune system, transmembrane, paired receptor; 1.19A {Homo sapiens} PDB: 2jjv_A 2uv3_A* 2jjt_A* 2jjs_A* 2jjw_A

Probab=98.01  E-value=8.6e-06  Score=47.47  Aligned_cols=38  Identities=21%  Similarity=0.345  Sum_probs=28.3

Q ss_pred             CCEEEEcccCCCCCeeeEEEeEeCCCc-----ccceeEEEEEE
Q psy7035          20 NQSLVLQNVSRARAGHYTCVGSNGEGD-----GQSNAQKTAYD   57 (70)
Q Consensus        20 ~~tL~i~~v~~~D~G~Y~C~a~N~~G~-----~~s~~~~L~V~   57 (70)
                      ..+|+|.+++.+|+|.|.|.+.|..+.     ....-..|.|.
T Consensus        73 ~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~fg~GT~L~V~  115 (127)
T 2jju_A           73 DFSISISNITPADAGTYYCVKFRKGSPDDVEFKSGAGTELSVR  115 (127)
T ss_dssp             BCCEEECSCCGGGCEEEEEEEEECCSSSCEEEEECCCEEEEEE
T ss_pred             EEEEEECCCCHHHCEEEEEEEEcCCCCccceEEeCCCeEEEEe
Confidence            458999999999999999999996321     11223577776

>2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens} PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A 3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L 3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ...

Probab=98.00  E-value=4.9e-06  Score=51.12  Aligned_cols=25  Identities=16%  Similarity=0.266  Sum_probs=22.7

Q ss_pred             EEEEcccCCCCCeeeEEEeEeCCCc
Q psy7035          22 SLVLQNVSRARAGHYTCVGSNGEGD   46 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N~~G~   46 (70)
                      +|.|..+..+|+|.|+|.|.|....
T Consensus       180 ~L~i~~~~~~d~g~Y~C~a~n~~~~  204 (216)
T 2xzc_L          180 TLTLSKADYEKHKVYACEVTHQGLS  204 (216)
T ss_dssp             EEEEEHHHHTTCCEEEEEEECTTCS
T ss_pred             EEEECHHHhCCCCcEEEEEEcCCCC
Confidence            7999999999999999999997653

>2e27_L Anti-ciguatoxin antibody, light chain; immunoglobulin fold, immune system; HET: AB0; 1.70A {Mus musculus} PDB: 3iy1_A

Probab=98.00  E-value=4.9e-06  Score=48.34  Aligned_cols=37  Identities=16%  Similarity=0.179  Sum_probs=26.8

Q ss_pred             CEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEE
Q psy7035          21 QSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYD   57 (70)
Q Consensus        21 ~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~   57 (70)
                      .+|+|.+++.+|+|.|.|.+.|.....-..-..|.|.
T Consensus        73 ~~L~I~~v~~~DsG~Y~C~~~~~~~~~fg~GT~l~v~  109 (119)
T 2e27_L           73 YSFSISNLEPEDAATYYCLQYDNFTWTFGGGTKLEIK  109 (119)
T ss_dssp             EEEEECSCCGGGCEEEEEEECGGGCCEECCCEEEEEE
T ss_pred             EEEEECCCChHHCEEEEEEEccCCceEECCCEEEEEe
Confidence            3799999999999999999998522222233456654

>2xqy_G A13-D6.3 monoclonal antibody, envelope glycoprotein H; immune system-viral protein complex, envelope protein; HET: NAG; 2.05A {Mus musculus}

Probab=97.98  E-value=6.7e-06  Score=53.17  Aligned_cols=38  Identities=8%  Similarity=-0.007  Sum_probs=29.8

Q ss_pred             CEEEEcccCCCCCeeeEEEeEeCCCc--ccceeEEEEEEe
Q psy7035          21 QSLVLQNVSRARAGHYTCVGSNGEGD--GQSNAQKTAYDI   58 (70)
Q Consensus        21 ~tL~i~~v~~~D~G~Y~C~a~N~~G~--~~s~~~~L~V~~   58 (70)
                      .+|+|.+++.+|+|.|.|.+.|..+.  ..+..+.|.|..
T Consensus        85 ~sL~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~  124 (261)
T 2xqy_G           85 VYIQLSSLTSEDSAVYYCGRLGYVYGFDYWGQGTTLTVSS  124 (261)
T ss_dssp             EEEEECSCCGGGCEEEEEEEECTTSSEEEECCCEEEEECS
T ss_pred             EEEEEcCCCcccCeEEEEEEecCCCcceEECCCEEEEEcc
Confidence            48999999999999999999996431  123446788875

>2gki_A Nuclease; anti-DNA antibody, catalytic antibody, immune system; 2.88A {Mus musculus}

Probab=97.98  E-value=6.9e-06  Score=53.42  Aligned_cols=40  Identities=15%  Similarity=0.058  Sum_probs=30.2

Q ss_pred             CEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeCC
Q psy7035          21 QSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGL   60 (70)
Q Consensus        21 ~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~p   60 (70)
                      .+|+|.+++.+|+|.|+|.|.|.....-..-..|.|...+
T Consensus       235 ~~L~I~~v~~~DsG~Y~C~a~~~~~~~fg~gt~l~v~~~~  274 (291)
T 2gki_A          235 FTLTISSVQAEDLAVYYCKQSYYHMYTFGSGTKLEIKHHH  274 (291)
T ss_dssp             EEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEECC-
T ss_pred             EEEEECCCCHHHCEEEEEEEccCCceEEcCCEEEEEEeeE
Confidence            3799999999999999999999644334445567776443

>2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin, glycosylation, immune system; HET: NAG FUC MAN GAL; 2.13A {Mus musculus}

Probab=97.97  E-value=8.4e-06  Score=50.80  Aligned_cols=27  Identities=15%  Similarity=0.251  Sum_probs=24.3

Q ss_pred             CEEEEcccCCCCCeeeEEEeEeCCCcc
Q psy7035          21 QSLVLQNVSRARAGHYTCVGSNGEGDG   47 (70)
Q Consensus        21 ~tL~i~~v~~~D~G~Y~C~a~N~~G~~   47 (70)
                      ++|.|.+++.+|+|.|+|.|.|..+..
T Consensus        76 ~~L~I~~~~~~D~g~Y~C~~~~~~~~~  102 (218)
T 2rgs_A           76 STLPIQHQDWMSGKEFKCKVNNKDLPS  102 (218)
T ss_dssp             EEEECCHHHHHTTCCEEEEEEETTCSS
T ss_pred             EEEEEcHHHcCCCCeEEEEEECCcCCC
Confidence            479999999999999999999987753

>2fbj_H IGA-kappa J539 FAB (heavy chain); immunoglobulin; HET: NAG FUC; 1.95A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mcp_H 2mcp_H*

Probab=97.97  E-value=8e-06  Score=50.88  Aligned_cols=28  Identities=18%  Similarity=0.198  Sum_probs=24.9

Q ss_pred             EEEEcccCCCCCeeeEEEeEeCCCcccc
Q psy7035          22 SLVLQNVSRARAGHYTCVGSNGEGDGQS   49 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N~~G~~~s   49 (70)
                      +|.|..+...|.|.|+|.|.|..|...+
T Consensus       186 ~L~i~~~~~~d~g~ytC~v~n~~~~~~~  213 (220)
T 2fbj_H          186 QLTLPAVECPEGESVKCSVQHDSNPVQE  213 (220)
T ss_dssp             EEEECGGGSCTTCEEEEEEEETTSCCEE
T ss_pred             EEEECHHHcCCCCeEEEEEEcCCCceEc
Confidence            5999999999999999999999987653

>2qhl_A Novel immune-type receptor 10; immunoglobulin variable domain-like beta-sandwich, immune system; 1.56A {Ictalurus punctatus} PDB: 3b5t_A 2qjd_A 2qte_A 2qqq_A

Probab=97.96  E-value=7.1e-06  Score=46.72  Aligned_cols=22  Identities=23%  Similarity=0.459  Sum_probs=21.0

Q ss_pred             EEEEcccCCCCCeeeEEEeEeC
Q psy7035          22 SLVLQNVSRARAGHYTCVGSNG   43 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N~   43 (70)
                      +|+|.+++.+|+|.|.|.+.|.
T Consensus        77 ~L~I~~~~~~DsG~Y~C~~~~~   98 (111)
T 2qhl_A           77 DLNIIGTREDDGGEYFCGEVEG   98 (111)
T ss_dssp             EEEESSCCGGGCEEEEEEEEET
T ss_pred             EEEECCCChhHCEEEEEEEccC
Confidence            7999999999999999999985

>3fku_X Neutralizing antibody F10; influenza, hemagglutinin, SCFV, F membrane, envelope protein, fusion protein, membrane, trans virion; HET: NAG BMA; 3.20A {Homo sapiens}

Probab=97.96  E-value=5.4e-06  Score=53.66  Aligned_cols=37  Identities=14%  Similarity=0.128  Sum_probs=29.2

Q ss_pred             EEEEcccCCCCCeeeEEEeEeC--------CCcccceeEEEEEEe
Q psy7035          22 SLVLQNVSRARAGHYTCVGSNG--------EGDGQSNAQKTAYDI   58 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N~--------~G~~~s~~~~L~V~~   58 (70)
                      +|.|.+++.+|+|.|.|.+.|.        .....+....|.|..
T Consensus        80 sL~I~~v~~~DsG~Y~C~~~~~~~~~g~~~~~~~~~~~~~L~V~~  124 (280)
T 3fku_X           80 YMDLRSLRSEDTAVYYCARSPSYICSGGTCVFDHWGQGTLVTVSS  124 (280)
T ss_dssp             EEEECSCCSTTCEECCEEECSSSSSSSTTCCCCEECCCCEEEECC
T ss_pred             EEEECCCChhhCEEEEEEEecCCccccccccccEECCCEEEEEcC
Confidence            7999999999999999999997        222234456788875

>2frg_P TREM-like transcript-1; immunoglobulin-like, beta-sandwich, cell surface receptor, triggering receptor, platelet receptor, ITIM, immune system; 1.19A {Homo sapiens}

Probab=97.96  E-value=9.9e-06  Score=46.52  Aligned_cols=36  Identities=14%  Similarity=0.238  Sum_probs=29.1

Q ss_pred             EEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEE
Q psy7035          22 SLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYD   57 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~   57 (70)
                      +|+|.+++.+|+|.|.|......+......+.|.|.
T Consensus        69 ~L~I~~l~~~Dsg~Y~C~~~~~~~~d~~~~v~L~V~  104 (106)
T 2frg_P           69 QVEMVTLQEEDAGEYGCMVDGARGPQILHRVSLNIL  104 (106)
T ss_dssp             EEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             EEEEccCCHHHCEEEEEEeecCCCCCEeEEEEEEEe
Confidence            799999999999999999987654444456777774

>2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid factor IGG1-FC, immunoglobulin C region, membrane, glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=97.96  E-value=3.4e-06  Score=52.16  Aligned_cols=26  Identities=15%  Similarity=0.207  Sum_probs=23.2

Q ss_pred             CEEEEcccCCCCCeeeEEEeEeCCCc
Q psy7035          21 QSLVLQNVSRARAGHYTCVGSNGEGD   46 (70)
Q Consensus        21 ~tL~i~~v~~~D~G~Y~C~a~N~~G~   46 (70)
                      .+|.|.++..+|+|.|+|.|.|..+.
T Consensus       199 s~L~i~~~~~~d~G~Y~C~a~n~~~~  224 (234)
T 2j6e_L          199 SYLSLTPEQWKSHRSYSCQVTHEGST  224 (234)
T ss_dssp             EEECCCGGGTTTSCCEEEEEEBTTBC
T ss_pred             EEEEECHHHcCCCCeEEEEEEeCCCc
Confidence            36999999999999999999998664

>3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A*

Probab=97.95  E-value=9.8e-06  Score=50.74  Aligned_cols=21  Identities=19%  Similarity=0.411  Sum_probs=20.4

Q ss_pred             EEEEcccCCCCCeeeEEEeEe
Q psy7035          22 SLVLQNVSRARAGHYTCVGSN   42 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N   42 (70)
                      +|+|.+++.+|+|.|+|.|.|
T Consensus       211 ~L~I~~v~~~DsG~Y~C~~~~  231 (250)
T 3esu_F          211 YMQLSSLTSVDSAVYFCARSG  231 (250)
T ss_dssp             EEEECSCCGGGCEEEEEEEEC
T ss_pred             EEEECCCCcccCEEEEEEEec
Confidence            799999999999999999998

>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A

Probab=97.94  E-value=6.4e-06  Score=53.70  Aligned_cols=25  Identities=12%  Similarity=0.165  Sum_probs=23.0

Q ss_pred             CEEEEcccCCCCCeeeEEEeEeCCC
Q psy7035          21 QSLVLQNVSRARAGHYTCVGSNGEG   45 (70)
Q Consensus        21 ~tL~i~~v~~~D~G~Y~C~a~N~~G   45 (70)
                      ++|+|.+++.+|+|.|+|.|.|..+
T Consensus       178 ~~L~I~~~~~~D~G~Y~C~a~n~~~  202 (323)
T 2wqr_A          178 STLPVGTRDWIEGETYQCRVTHPHL  202 (323)
T ss_dssp             EEEECCHHHHHTTCCEEEEEECTTS
T ss_pred             EEEEECHHHccCCCCEEEEEECCCC
Confidence            4799999999999999999999864

>3bdb_A Novel immune-type receptor 11; immunoglobulin variable domain-like beta-sandwich, stalk region, immune system; 2.80A {Ictalurus punctatus}

Probab=97.94  E-value=1.6e-05  Score=47.36  Aligned_cols=38  Identities=13%  Similarity=0.207  Sum_probs=29.6

Q ss_pred             EEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeC
Q psy7035          22 SLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIG   59 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~   59 (70)
                      +|+|.+++.+|+|.|.|.+.+........-..|.|...
T Consensus        77 ~L~I~~~~~~Dsg~Y~C~~~~~~~~~fg~GT~L~V~~~  114 (137)
T 3bdb_A           77 DLNIIGAREDDGGEYFCGEVEGIIIKFTSGTRLQFEGS  114 (137)
T ss_dssp             EEEEESCCSTTCEEEEEEEECSSCEEEEEEEEECCCCC
T ss_pred             EEEECCCCHHHCEEEEEEEccCCeEEECCCEEEEEECC
Confidence            79999999999999999999864333344567777643

>2ywz_A NEW antigen receptor variable domain; IG VNAR, immune system; 2.21A {Orectolobus maculatus} PDB: 2ywy_A

Probab=97.93  E-value=6.3e-06  Score=47.04  Aligned_cols=23  Identities=22%  Similarity=0.456  Sum_probs=21.4

Q ss_pred             CEEEEcccCCCCCeeeEEEeEeC
Q psy7035          21 QSLVLQNVSRARAGHYTCVGSNG   43 (70)
Q Consensus        21 ~tL~i~~v~~~D~G~Y~C~a~N~   43 (70)
                      .+|+|.+++.+|+|.|.|.+.|.
T Consensus        66 ~~L~I~~v~~~DsG~Y~C~~~~~   88 (111)
T 2ywz_A           66 FSLRISDLRVEDSGTYKCQADYS   88 (111)
T ss_dssp             EEEEECSCCGGGCEEEEEEEEEC
T ss_pred             EEEEECCCChhcCEEEEEEEEcC
Confidence            47999999999999999999994

>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A

Probab=97.92  E-value=1.2e-05  Score=55.11  Aligned_cols=38  Identities=11%  Similarity=0.099  Sum_probs=30.9

Q ss_pred             CEEEEcccCCCCCeeeEEEeEeCCCc-----ccceeEEEEEEe
Q psy7035          21 QSLVLQNVSRARAGHYTCVGSNGEGD-----GQSNAQKTAYDI   58 (70)
Q Consensus        21 ~tL~i~~v~~~D~G~Y~C~a~N~~G~-----~~s~~~~L~V~~   58 (70)
                      .+|.|.+++.+|+|.|+|.|.|..|.     ..+..+.|.|..
T Consensus        80 ~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~l~V~~  122 (475)
T 1iga_A           80 AYMGLSSLRPEDTAVYYCARDPYGGGKSEFDYWGQGTLVTVSS  122 (475)
T ss_pred             EEEEECCCChhhCEEEEEEEeccCCCccceeeecCceEEEecc
Confidence            48999999999999999999998763     234457888873

>3bik_B Programmed cell death protein 1; CO-stimulation, receptor-ligand complex, immunoglobulin-like sandwich, T cell, B cell, programmed death; 2.65A {Mus musculus} SCOP: b.1.1.1

Probab=97.92  E-value=1.8e-05  Score=46.91  Aligned_cols=38  Identities=13%  Similarity=0.178  Sum_probs=29.8

Q ss_pred             EEEEcccCCCCCeeeEEEeEeCCCc---ccceeEEEEEEeC
Q psy7035          22 SLVLQNVSRARAGHYTCVGSNGEGD---GQSNAQKTAYDIG   59 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N~~G~---~~s~~~~L~V~~~   59 (70)
                      +|+|.+++.+|+|.|.|.+.+..+.   ..+....|.|...
T Consensus        84 ~L~I~~~~~~Dsg~Y~C~~~~~~~~~~~~~~~gt~L~V~~~  124 (134)
T 3bik_B           84 HMNILDTRRNDSGIYLCGAISLHPKAKIEESPGAELVVTER  124 (134)
T ss_dssp             EEEECSCCGGGCEEEEEEEEECSSSCEEEECCCEEEEEECC
T ss_pred             EEEECCCChHHCEEEEEEEEeCCCCceEEEcCCEEEEEeCC
Confidence            7999999999999999999886432   1244678888743

>2aw2_A B and T lymphocyte attenuator; IGI domain, IGG domain, TNFRSF, protein-protein complex, IMM system; HET: NAG FUL; 2.80A {Homo sapiens} SCOP: b.1.1.1

Probab=97.92  E-value=3.9e-05  Score=45.99  Aligned_cols=36  Identities=17%  Similarity=0.170  Sum_probs=34.3

Q ss_pred             EEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEE
Q psy7035          22 SLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYD   57 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~   57 (70)
                      .|.|.+|-.+|+|.|.|.|.+..|..+|-.++|.|.
T Consensus        74 vLhf~~V~~sDsGsYRCsAn~~sg~ieSHsvtI~Vt  109 (120)
T 2aw2_A           74 ILHFEPVLPNDNGSYRCSANFQSNLIESHSTTLYVT  109 (120)
T ss_dssp             EEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEE
T ss_pred             EEEEeeeeEcCCcceEEEeeCCCCcEEeeEEEEEEE
Confidence            699999999999999999999999999999999986

>1hkf_A NKP44, NK cell activating receptor; natural cytotoxicity receptor, immunoglobulin domain; 2.2A {Homo sapiens} SCOP: b.1.1.1

Probab=97.92  E-value=2.4e-05  Score=45.78  Aligned_cols=35  Identities=14%  Similarity=0.307  Sum_probs=26.9

Q ss_pred             EEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEE
Q psy7035          22 SLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAY   56 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V   56 (70)
                      +|+|.+++.+|+|.|.|.............+.|.+
T Consensus        85 sL~I~~l~~~Dsg~Y~C~v~~~~~~~~~~~~~l~L  119 (122)
T 1hkf_A           85 TVTMTDLREEDSGHYWCRIYRPSDNSVSKSVRFYL  119 (122)
T ss_dssp             EEEECSCCGGGCEEEEEEEECTTTCCEEEEEEEEE
T ss_pred             EEEEeCCCHHHCEEEEEEEEcCCCCcccccEEEEE
Confidence            79999999999999999998865444444444444

>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*

Probab=97.91  E-value=1.1e-05  Score=54.87  Aligned_cols=37  Identities=11%  Similarity=0.069  Sum_probs=30.4

Q ss_pred             EEEEcccCCCCCeeeEEEeEeCCCc-----------ccceeEEEEEEe
Q psy7035          22 SLVLQNVSRARAGHYTCVGSNGEGD-----------GQSNAQKTAYDI   58 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N~~G~-----------~~s~~~~L~V~~   58 (70)
                      +|.|.+++.+|+|.|+|.|.|..|.           ..+..+.|.|..
T Consensus        80 ~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~  127 (457)
T 1hzh_H           80 YMELRSLRSADTAVYYCARVGPYSWDDSPQDNYYMDVWGKGTTVIVSS  127 (457)
T ss_dssp             EEEECSCCGGGCEEEEEEECCCCCSSCCTTTTCSCCBCCCCEEEEECS
T ss_pred             EEEECCCCcccCEEEEEEEecCCccccccccccccceECCcEEEEecC
Confidence            8999999999999999999998761           233456788874

>1mju_H Immunoglobulin MS6-12; catalytic antibody, ester hydrolysis, esterolytic, FAB, immune system; 1.22A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mjj_B 1mie_H 1mj7_H* 1mj8_H 1mh5_B* 4aeh_H 2y5t_A 2vwe_E 2op4_H 2ntf_H 3loh_C 1e4x_H 2vl5_A 1e4x_I 1e4w_H 3opz_H 3oz9_H 1plg_H 1hi6_B 1cfn_B ...

Probab=97.91  E-value=3.8e-06  Score=52.70  Aligned_cols=45  Identities=13%  Similarity=0.092  Sum_probs=28.1

Q ss_pred             CEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeCCCCCCCCc
Q psy7035          21 QSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGLGIPAEPL   67 (70)
Q Consensus        21 ~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~p~~~~~p~   67 (70)
                      .+|+|..++++| |.|+|.|.|..+. ....+.|.+...|..|-+||
T Consensus       182 s~L~i~~~~~~~-g~Y~C~a~n~~~~-~~~~~~~~~~~~p~~~~~~~  226 (227)
T 1mju_H          182 SSVTVTSSTWPS-QSITCNVAHPASS-TKVDKKIEPRGPTIKPCPPC  226 (227)
T ss_dssp             EEEEECTTTTTT-SCCEEEEEEGGGT-EEEEEECCCCCC--------
T ss_pred             EEEEEchhhcCC-CeEEEEEEECCCC-cceEEEeCCCCCCCCCCCCC
Confidence            479999999988 9999999996544 23345666665555566664

>3kg5_A B-cell antigen receptor complex-associated protei chain; CD79B, IG-beta, BCR, immunoglobulin domain, protein binding; 3.20A {Homo sapiens}

Probab=97.91  E-value=2.2e-05  Score=47.11  Aligned_cols=40  Identities=15%  Similarity=0.046  Sum_probs=29.4

Q ss_pred             EEEEcccCCCCCeeeEEEeEeCCC--cccceeEEEEEEeCCC
Q psy7035          22 SLVLQNVSRARAGHYTCVGSNGEG--DGQSNAQKTAYDIGLG   61 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N~~G--~~~s~~~~L~V~~~p~   61 (70)
                      +|+|.+++.+|+|.|.|.+.+..+  .....-..|.|...|+
T Consensus        81 ~L~I~~~~~~Dsg~Y~C~~~~~~~~~~~fg~GT~L~V~~~p~  122 (134)
T 3kg5_A           81 TLTIQGIRFEDNGIYFCQQKCNNTSEVYQGCGTELRVMGFST  122 (134)
T ss_dssp             EEEECSCCTTTCEEEEEEEECTTTCCEEECCCEEEEEECC--
T ss_pred             EEEECCCCcCcCEEEEEEEEcCCCCceEECCCEEEEEecCCC
Confidence            799999999999999999998632  1223356788884443

>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L* 1mfb_L* ...

Probab=97.91  E-value=3.3e-06  Score=51.66  Aligned_cols=44  Identities=16%  Similarity=0.209  Sum_probs=30.4

Q ss_pred             cccCeEcCcCccc--eEEecC------CEEEEcccCCCCCeeeEEEeEeCCC
Q psy7035           2 SFSNVQLYNNISA--GVIVSN------QSLVLQNVSRARAGHYTCVGSNGEG   45 (70)
Q Consensus         2 ~~ng~~l~~~~~~--~~~~~~------~tL~i~~v~~~D~G~Y~C~a~N~~G   45 (70)
                      ++||+++..+...  .....+      .+|.|.++..+|+|.|+|.|.|...
T Consensus       152 ~k~g~~l~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~  203 (212)
T 1q0x_L          152 KVDGTPVTAGMETTQPSKQSNNKYMASSYLTLTARAWERHSSYSCQVTHEGH  203 (212)
T ss_dssp             EETTEEECTTEEECCCEECTTSCEEEEEEEEEEHHHHTTCCEEEEEEEETTE
T ss_pred             EECCEeCCCCeecCCceeCCCCCEEEEEEEEEcHHHccCCCcEEEEEEeCCc
Confidence            4788887643211  111122      3699999999999999999999754

>2yz1_A Tyrosine-protein phosphatase non-receptor type substrate 1; beta-sandwich, structural genomics, NPPSFA; 1.40A {Mus musculus}

Probab=97.90  E-value=1e-05  Score=46.27  Aligned_cols=24  Identities=33%  Similarity=0.491  Sum_probs=22.0

Q ss_pred             CEEEEcccCCCCCeeeEEEeEeCC
Q psy7035          21 QSLVLQNVSRARAGHYTCVGSNGE   44 (70)
Q Consensus        21 ~tL~i~~v~~~D~G~Y~C~a~N~~   44 (70)
                      .+|+|.+++.+|+|.|.|.+.|..
T Consensus        78 ~~L~I~~v~~~DsG~Y~C~~~~~~  101 (120)
T 2yz1_A           78 FSIRISNVTPEDAGTYYCVKFQKG  101 (120)
T ss_dssp             CCEEECSCCGGGCEEEEEEEEECC
T ss_pred             EEEEECCCCHHHCEEEEEEEEcCC
Confidence            479999999999999999999864

>3bn9_D E2 FAB heavy chain; antibody-protease complex, protein-protein complex, enzyme- inhibitor complex, disease mutation, glycoprotein, hydrolase; 2.17A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 3kr3_H 2xtj_E

Probab=97.90  E-value=1.1e-05  Score=52.37  Aligned_cols=38  Identities=8%  Similarity=0.047  Sum_probs=30.3

Q ss_pred             CEEEEcccCCCCCeeeEEEeEeCCCc------------ccceeEEEEEEe
Q psy7035          21 QSLVLQNVSRARAGHYTCVGSNGEGD------------GQSNAQKTAYDI   58 (70)
Q Consensus        21 ~tL~i~~v~~~D~G~Y~C~a~N~~G~------------~~s~~~~L~V~~   58 (70)
                      .+|+|.+++.+|+|.|.|.+.|..|.            ..+....|.|..
T Consensus        79 ~sL~I~~v~~~DsG~Y~C~~~~~~g~~~~~~~~~~~~~~~~~~t~L~V~~  128 (257)
T 3bn9_D           79 LYLQMSSLRAEDTAVYYCARPYLTYPQRRGPQNVSPFDNWGQGTMVTVSS  128 (257)
T ss_dssp             EEEEEESCCGGGCEEEEEEEECCSSTTSCCCCTTCCEEEECCCEEEEECS
T ss_pred             EEEEECCCChhhCEEEEEEEecCCCcccccccccceeeeeCCcEEEEecC
Confidence            48999999999999999999998751            122346888875

>2yc1_B Single chain antibody fragment 9004G; immune system-toxin complex, scorpion toxin; 1.90A {Homo sapiens} PDB: 2ybr_B 3lh2_L 3h3p_L 3lhp_L

Probab=97.89  E-value=8.6e-06  Score=49.53  Aligned_cols=36  Identities=11%  Similarity=0.138  Sum_probs=28.6

Q ss_pred             EEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEE
Q psy7035          22 SLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYD   57 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~   57 (70)
                      +|+|.+++.+|+|.|.|.+.|........-..|.|.
T Consensus        87 sL~I~~v~~~DsG~Y~C~~~~~~~~~fg~GT~L~V~  122 (146)
T 2yc1_B           87 TLTISSLEPEDFAIYYCQQYRYSPRTFGQGTKVEIK  122 (146)
T ss_dssp             EEEESSCCGGGCSEEEEEECSSSSCEECCCEEEEEC
T ss_pred             EEEECCCCHHHCEEEEEEEecCCCCeECCCEEEEEe
Confidence            799999999999999999998643333445678886

>2coq_A NEW antigen receptor variable domain; IG VNAR, natural TYPE2, immune system; 2.10A {Orectolobus maculatus}

Probab=97.89  E-value=7.9e-06  Score=46.31  Aligned_cols=22  Identities=23%  Similarity=0.543  Sum_probs=20.9

Q ss_pred             CEEEEcccCCCCCeeeEEEeEe
Q psy7035          21 QSLVLQNVSRARAGHYTCVGSN   42 (70)
Q Consensus        21 ~tL~i~~v~~~D~G~Y~C~a~N   42 (70)
                      .+|+|.+++.+|+|.|.|.+.|
T Consensus        66 ~~L~I~~~~~~DsG~Y~C~~~~   87 (108)
T 2coq_A           66 ASLTIRDLRVEDSGTYKCKAYR   87 (108)
T ss_dssp             EEEEECSCCGGGCEEEEEEEEE
T ss_pred             EEEEECCCCcccCEEEEEEEEe
Confidence            4799999999999999999998

>1tvd_A T cell receptor, ES204 V delta; immunoreceptor, TCR, delta chain, variable domain; 1.90A {Homo sapiens} SCOP: b.1.1.1

Probab=97.89  E-value=1.8e-05  Score=45.20  Aligned_cols=22  Identities=23%  Similarity=0.342  Sum_probs=20.9

Q ss_pred             EEEEcccCCCCCeeeEEEeEeC
Q psy7035          22 SLVLQNVSRARAGHYTCVGSNG   43 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N~   43 (70)
                      +|+|.+++.+|+|.|.|.+.|.
T Consensus        77 ~L~I~~~~~~DsG~Y~C~~~~~   98 (116)
T 1tvd_A           77 HLVISPVRTEDSATYYCAFTLP   98 (116)
T ss_dssp             EEEESSCCGGGCEEEEEEEECT
T ss_pred             EEEEccCChHHCEEEEEEEeCC
Confidence            7999999999999999999984

>2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A*

Probab=97.88  E-value=9.8e-06  Score=51.03  Aligned_cols=24  Identities=25%  Similarity=0.533  Sum_probs=21.9

Q ss_pred             CEEEEcccCCCCCeeeEEEeEeCC
Q psy7035          21 QSLVLQNVSRARAGHYTCVGSNGE   44 (70)
Q Consensus        21 ~tL~i~~v~~~D~G~Y~C~a~N~~   44 (70)
                      .+|+|.+++.+|+|.|+|.|.|..
T Consensus       200 ~~L~I~~v~~~D~G~Y~C~a~~~~  223 (242)
T 2znx_A          200 YYLDLNSVTTEDTATYYCANXDGD  223 (242)
T ss_dssp             EEEEECSCCGGGCEEEEEEETTSS
T ss_pred             EEEEECCCCcCcCEEEEEeccCCc
Confidence            389999999999999999999953

>1dn0_B IGM-kappa cold agglutinin (heavy chain); FAB, antibody, human, immune system; 2.28A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1qlr_B* 2j6e_H* 2agj_H* 2h32_H

Probab=97.88  E-value=1.2e-05  Score=50.54  Aligned_cols=37  Identities=22%  Similarity=0.256  Sum_probs=28.4

Q ss_pred             EEEEcccCCCCCeeeEEEeEe--CCCc---ccceeEEEEEEe
Q psy7035          22 SLVLQNVSRARAGHYTCVGSN--GEGD---GQSNAQKTAYDI   58 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N--~~G~---~~s~~~~L~V~~   58 (70)
                      +|+|.+++.+|+|.|.|.+.+  ..|.   ..+..+.|.|..
T Consensus        79 ~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~  120 (232)
T 1dn0_B           79 SLKLSSVTAADTAVYYCARPPHDTSGHYWNYWGQGTLVTVSS  120 (232)
T ss_dssp             EEEECSCCGGGCEEEEEEECSSTTSCSCCSEECCCEEEEECS
T ss_pred             EEEECCCCcccCEEEEEEEecCCcCCchhhhcccceEEEEcc
Confidence            899999999999999999994  3122   223456888875

>2h32_A Immunoglobulin IOTA chain; beta sheets, V and C-type IG folds, immune system; 2.70A {Homo sapiens}

Probab=97.88  E-value=4.4e-06  Score=49.06  Aligned_cols=42  Identities=10%  Similarity=0.105  Sum_probs=27.1

Q ss_pred             EEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeCCCCCC
Q psy7035          22 SLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGLGIPA   64 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~p~~~~   64 (70)
                      +|+|.+++.+|+|.|.|.+.+..+.. +.-..|.|.-+|..|.
T Consensus        80 sL~I~~~~~~DsG~Y~C~~~~~~~~~-~~~t~l~v~~~~~~~~  121 (126)
T 2h32_A           80 YLSISELQPEDEAMYYCAMGARSSEK-EEREREWEEEMEPTAA  121 (126)
T ss_dssp             EEEECSCCGGGCEEEEEEEECSCCCC-CCTTCC----------
T ss_pred             EEEECCCChhHCEEEEEEEEcCCCCc-ceeEEEeeccCCCccc
Confidence            79999999999999999999887654 3455677765554443

>1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen complex, HIV inhibiting antibody; 1.89A {Mus musculus} PDB: 1jp5_A

Probab=97.87  E-value=8.1e-06  Score=51.14  Aligned_cols=23  Identities=22%  Similarity=0.413  Sum_probs=21.7

Q ss_pred             CEEEEcccCCCCCeeeEEEeEeC
Q psy7035          21 QSLVLQNVSRARAGHYTCVGSNG   43 (70)
Q Consensus        21 ~tL~i~~v~~~D~G~Y~C~a~N~   43 (70)
                      .+|+|.+++.+|+|.|+|.|.|.
T Consensus       206 ~~L~I~~v~~~DsG~Y~C~a~n~  228 (247)
T 1svz_A          206 AFLQINNLKNEDTATYFCVRDRH  228 (247)
T ss_dssp             EEEEECSCCGGGCEEEEEEEEEG
T ss_pred             EEEEECCCChhHCEEEEEEEecc
Confidence            48999999999999999999995

>1q9r_B S25-2 FAB (IGG1K) heavy chain; antigen-binding fragment, anti-carbohydrate, anti-LPS, antibody, immunoglobulin, KDO, complex, immune system; HET: KDA KDO; 1.45A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q9l_B 1q9k_B* 1q9q_B* 1q9v_B* 2r1w_B* 2r1x_B* 2r1y_B* 2r2b_B* 2r2e_B* 2r2h_B* 3bpc_B* 3sy0_B* 3t4y_B* 3t65_B* 2r23_B* 1q9t_B* 3t77_B* 3okl_B* 3okk_B* 3okm_B ...

Probab=97.87  E-value=1e-05  Score=49.95  Aligned_cols=25  Identities=12%  Similarity=0.183  Sum_probs=22.6

Q ss_pred             CEEEEcccCCCCCeeeEEEeEeCCCc
Q psy7035          21 QSLVLQNVSRARAGHYTCVGSNGEGD   46 (70)
Q Consensus        21 ~tL~i~~v~~~D~G~Y~C~a~N~~G~   46 (70)
                      .+|.|.+++.+| |.|+|.|.|..|.
T Consensus       188 s~L~i~~~~~~d-g~y~C~a~n~~~~  212 (222)
T 1q9r_B          188 SSVTVPSSTWPS-ETVTCNVAHPASS  212 (222)
T ss_dssp             EEEEEETTTTTT-SCCEEEEEEGGGT
T ss_pred             EEEEECchhcCC-CeEEEEEEccCCC
Confidence            479999999999 9999999998875

>1dlf_H Anti-dansyl immunoglobulin IGG2A(S); FV fragment; 1.45A {Mus musculus} SCOP: b.1.1.1 PDB: 2dlf_H 1wz1_H* 3iy5_B 2uud_H*

Probab=97.86  E-value=2e-05  Score=45.75  Aligned_cols=38  Identities=13%  Similarity=0.118  Sum_probs=26.3

Q ss_pred             EEEEcccCCCCCeeeEEEeEeCC---CcccceeEEEEEEeC
Q psy7035          22 SLVLQNVSRARAGHYTCVGSNGE---GDGQSNAQKTAYDIG   59 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N~~---G~~~s~~~~L~V~~~   59 (70)
                      +|+|.+++.+|+|.|.|.+.+..   ...-..-..|.|...
T Consensus        82 ~L~I~~~~~~Dsg~Y~C~~~~~~~~~~~~fg~GT~L~V~~~  122 (124)
T 1dlf_H           82 YLQMNTLRAEDTGIYYCTGIYYHYPWFAYWGQGTLVTVSAE  122 (124)
T ss_dssp             EEEECSCCGGGCEEEEEEEEBTTBSSCCCCCCCEEEEEC--
T ss_pred             EEEECCCCHHHCEEEEEEEEeCCCcccceECCCEEEEEecC
Confidence            79999999999999999998751   111122346777633

>3bp6_A Programmed cell death protein 1; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3rnk_A 3sbw_A 3bp5_A 1npu_A 3rnq_A

Probab=97.85  E-value=2.3e-05  Score=45.10  Aligned_cols=36  Identities=14%  Similarity=0.222  Sum_probs=28.8

Q ss_pred             EEEEcccCCCCCeeeEEEeEeCCCc---ccceeEEEEEE
Q psy7035          22 SLVLQNVSRARAGHYTCVGSNGEGD---GQSNAQKTAYD   57 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N~~G~---~~s~~~~L~V~   57 (70)
                      +|+|.+++.+|+|.|.|.+.+..+.   ..+..+.|.|.
T Consensus        74 ~L~I~~~~~~Dsg~Y~C~~~~~~~~~~~~~~~~t~L~V~  112 (117)
T 3bp6_A           74 HMNILDTRRNDSGIYLCGAISLHPKLKIEESPGAELVVT  112 (117)
T ss_dssp             EEEESSCCGGGCEEEEEEEEECSSSCEEEECCCEEEEEC
T ss_pred             EEEECcCCHHHCEEEEEEEEecCCccccccCCcEEEEEE
Confidence            7999999999999999999986442   23446788886

>3n9g_H FAB fragment of MAB CR4354, heavy chain; human neutralizing antibody, immun anti-WEST NIle virus; 1.43A {Homo sapiens} PDB: 3iyw_H 3qeh_A 3sqo_H 4hk0_A 4hk3_J 4hkx_A* 3u0t_D 3c08_H 3lmj_H 3lqa_H* 3c09_H* 4dn3_H 3pp4_H 3pp3_H 4hkb_J 2jb5_H* 2jb6_B* 2eh7_H 2eh8_H 3jwd_H* ...

Probab=97.85  E-value=1.7e-05  Score=49.66  Aligned_cols=36  Identities=11%  Similarity=0.171  Sum_probs=27.6

Q ss_pred             EEEEcccCCCCCeeeEEEeEeCCC-------cccceeEEEEEE
Q psy7035          22 SLVLQNVSRARAGHYTCVGSNGEG-------DGQSNAQKTAYD   57 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N~~G-------~~~s~~~~L~V~   57 (70)
                      +|+|.+++.+|+|.|.|.+.+..+       ...+....|.|.
T Consensus        80 sL~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~l~V~  122 (230)
T 3n9g_H           80 YMELSSLRSEDTAVYYCARDWGSNYVWGSYPKYWGQGTLVTVS  122 (230)
T ss_dssp             EEEECSCCGGGCEEEEEEEECCCSSSTTCCEEEECCCEEEEEC
T ss_pred             EEEECCCChhhCEEEEEEEccCCCCcccccccccCCCEEEEEE
Confidence            499999999999999999998641       122344677776

>2gki_A Nuclease; anti-DNA antibody, catalytic antibody, immune system; 2.88A {Mus musculus}

Probab=97.85  E-value=5.7e-06  Score=53.80  Aligned_cols=38  Identities=11%  Similarity=0.152  Sum_probs=29.5

Q ss_pred             CEEEEcccCCCCCeeeEEEeEeCC-Cc---ccceeEEEEEEe
Q psy7035          21 QSLVLQNVSRARAGHYTCVGSNGE-GD---GQSNAQKTAYDI   58 (70)
Q Consensus        21 ~tL~i~~v~~~D~G~Y~C~a~N~~-G~---~~s~~~~L~V~~   58 (70)
                      .+|+|.+++.+|+|.|.|.+.|.. |.   ..+..+.|.|..
T Consensus       101 ~sL~I~~v~~~DsG~Y~C~~~~~~~g~~~~~~~~~~~L~V~~  142 (291)
T 2gki_A          101 AYMELSSLTSEDSAVYYCARGAYKRGYAMDYWGQGTSVTVSS  142 (291)
T ss_dssp             EEEEECSCCGGGCEEEEEEEECGGGTTCEEEECCCEEEEECC
T ss_pred             EEEEECcCCHHHCEEEEEEEeccccccccceeCCCcEEEEec
Confidence            489999999999999999999974 21   122345788875

>1ypz_F T-cell receptor gamma chain, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=97.84  E-value=3e-05  Score=48.71  Aligned_cols=36  Identities=14%  Similarity=0.122  Sum_probs=28.4

Q ss_pred             EEEEcccCCCCCeeeEEEeEeC---CCcccceeEEEEEE
Q psy7035          22 SLVLQNVSRARAGHYTCVGSNG---EGDGQSNAQKTAYD   57 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N~---~G~~~s~~~~L~V~   57 (70)
                      +|.|.+++.+|+|.|.|.+.|.   .....+..+.|.|.
T Consensus        80 ~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~L~V~  118 (230)
T 1ypz_F           80 ILTIYSLEEEDEAIYYCSYGEGSSGFHKVFAEGTKLIVI  118 (230)
T ss_dssp             EEEECSCCGGGCSEEEEEECCTTTCCCCEECSCEEEEEE
T ss_pred             EEEECcCChhhCEEEEEEEECCCCCcccccCCCEEEEEe
Confidence            8999999999999999999985   11122345688887

>2d7t_H Anti polyhydroxybutyrate antibody FV, heavy chain; plastic, immune system; 1.70A {Homo sapiens}

Probab=97.83  E-value=1.5e-05  Score=47.64  Aligned_cols=39  Identities=8%  Similarity=0.021  Sum_probs=28.1

Q ss_pred             EEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeCC
Q psy7035          22 SLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGL   60 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~p   60 (70)
                      +|+|.+++.+|+|.|.|.+.+........-..|.|...|
T Consensus        80 sL~I~~~~~~Dsg~Y~C~~~~~~~~~fg~GT~L~V~~~~  118 (139)
T 2d7t_H           80 YMEVRRLRSDDTAVYYCATGWWGMDVWGQGTLVTVSSAS  118 (139)
T ss_dssp             EEEECSCCGGGCEEEEEEECSSSCCEECCCEEEEECC--
T ss_pred             EEEECcCCHHHCEEEEEEEeeCCcCEECCCEEEEEeccc
Confidence            799999999999999999887322223334578886444

>1fo0_A Protein (BM3.3 T cell receptor alpha-chain); class I MHC, H-2KB, TCR-PMHC complex, immune system; 2.50A {Mus musculus} SCOP: b.1.1.1 PDB: 1nam_A*

Probab=97.83  E-value=2.4e-05  Score=44.75  Aligned_cols=22  Identities=14%  Similarity=0.321  Sum_probs=20.7

Q ss_pred             EEEEcccCCCCCeeeEEEeEeC
Q psy7035          22 SLVLQNVSRARAGHYTCVGSNG   43 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N~   43 (70)
                      +|+|.+++.+|+|.|.|.+.+.
T Consensus        75 ~L~I~~~~~~DsG~Y~C~~~~~   96 (116)
T 1fo0_A           75 GLIITATQIEDSAVYFCAMRGD   96 (116)
T ss_dssp             EEEECSCCGGGCEEEEEEEECC
T ss_pred             EEEECCCChhhCEEEEEEEEcC
Confidence            7999999999999999999983

>2atp_B T-cell surface glycoprotein CD8 beta chain; CD8AB, CD8AA, MHC, immune system; HET: NAG; 2.40A {Mus musculus} SCOP: b.1.1.1 PDB: 3b9k_B*

Probab=97.83  E-value=2.5e-05  Score=44.45  Aligned_cols=22  Identities=23%  Similarity=0.382  Sum_probs=20.5

Q ss_pred             EEEEcccCCCCCeeeEEEeEeC
Q psy7035          22 SLVLQNVSRARAGHYTCVGSNG   43 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N~   43 (70)
                      +|+|.+++.+|+|.|.|.+.+.
T Consensus        80 ~L~I~~~~~~DsG~Y~C~~~~~  101 (115)
T 2atp_B           80 FLSIMNVKPEDSDFYFCATVGS  101 (115)
T ss_dssp             EEEECSCCGGGCEEEEEEEECS
T ss_pred             EEEECCCCHHHCEEEEEeEccC
Confidence            8999999999999999999863

>3liz_H 4C3 monoclonal antibody heavy chain; hydrolase-immune system complex; HET: NAG BMA MAN; 1.80A {Mus musculus} PDB: 3rvv_D* 3rvu_D 3rvt_D* 3rvw_D* 3rvx_D 1lo4_H 1ub6_H 3r06_B 3r08_H

Probab=97.83  E-value=1.6e-05  Score=50.52  Aligned_cols=36  Identities=8%  Similarity=0.074  Sum_probs=27.4

Q ss_pred             EEEEcccCCCCCeeeEEEeEeCC---CcccceeEEEEEE
Q psy7035          22 SLVLQNVSRARAGHYTCVGSNGE---GDGQSNAQKTAYD   57 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N~~---G~~~s~~~~L~V~   57 (70)
                      +|+|.+++.+|+|.|.|.+.|..   ....+....|.|.
T Consensus        80 sL~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~l~V~  118 (253)
T 3liz_H           80 FLQMSSLKSEDTAMYYCTRDPAGRAWFAYWGQGTLVTVS  118 (253)
T ss_dssp             EEEECSCCGGGCEEEEEEECCBTTTBCCEECCCEEEEEC
T ss_pred             EEEECCCChhhCEEEEEEEecCCcceeeEECCCEEEEEe
Confidence            59999999999999999999863   1122334677776

>1lp9_E T-cell receptor alpha chain; immunoregulatory complex, class I MHC:TCR CO-crystal, immune; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 2j8u_E 2jcc_E 2uwe_E 1nfd_A*

Probab=97.81  E-value=2.3e-05  Score=49.02  Aligned_cols=39  Identities=8%  Similarity=-0.035  Sum_probs=28.5

Q ss_pred             CEEEEcccCCCCCeeeEEEeEeCCC---c-ccceeEEEEEEeC
Q psy7035          21 QSLVLQNVSRARAGHYTCVGSNGEG---D-GQSNAQKTAYDIG   59 (70)
Q Consensus        21 ~tL~i~~v~~~D~G~Y~C~a~N~~G---~-~~s~~~~L~V~~~   59 (70)
                      .+|+|.+++.+|+|.|.|.+.+..|   . .......|.|...
T Consensus        73 ~sL~I~~~~~~Dsg~Y~C~~~~~~~~~~~~~~g~gt~L~V~~~  115 (194)
T 1lp9_E           73 FHLQKSSAQLSDSALYYCALFLASSSFSKLVFGQGTSLSVVPN  115 (194)
T ss_dssp             CCEEESSCCGGGCEEEEEEEEECSSSSCEEEECCCEEEEEECC
T ss_pred             EEEEEcccCcccCeeEEEEEecccCCcceeeeccCceEEecCc
Confidence            4899999999999999999988421   1 1123457888744

>1x9q_A SCFV, 4M5.3 anti-fluorescein single chain antibody fragment; VERY high affinity, antibody binding, electrostatics, directed evolution; HET: FLU; 1.50A {Homo sapiens}

Probab=97.80  E-value=1.8e-05  Score=50.46  Aligned_cols=23  Identities=26%  Similarity=0.475  Sum_probs=21.5

Q ss_pred             CEEEEcccCCCCCeeeEEEeEeC
Q psy7035          21 QSLVLQNVSRARAGHYTCVGSNG   43 (70)
Q Consensus        21 ~tL~i~~v~~~D~G~Y~C~a~N~   43 (70)
                      .+|+|.+++.+|+|.|+|.|.|.
T Consensus       232 ~~L~I~~v~~~DsG~Y~C~a~~~  254 (268)
T 1x9q_A          232 VYLQMNNLRVEDTGIYYCTGASY  254 (268)
T ss_dssp             EEEEECSCCGGGCEEEEEEEEET
T ss_pred             EEEEECCCCHHHCEEEEEEEccC
Confidence            48999999999999999999984

>3sob_L Antibody light chain; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L*

Probab=97.80  E-value=1.6e-05  Score=49.01  Aligned_cols=26  Identities=15%  Similarity=0.258  Sum_probs=22.9

Q ss_pred             CEEEEcccCCCCCeeeEEEeEeCCCc
Q psy7035          21 QSLVLQNVSRARAGHYTCVGSNGEGD   46 (70)
Q Consensus        21 ~tL~i~~v~~~D~G~Y~C~a~N~~G~   46 (70)
                      .+|.|..+..+|+|.|+|.|+|....
T Consensus       200 s~L~i~~~~~~d~g~Y~C~a~n~~~~  225 (237)
T 3sob_L          200 STLTLSKADYEKHKVYACEVTHQGLS  225 (237)
T ss_dssp             EEEEEEHHHHTTCCEEEEEEECTTCS
T ss_pred             EEEEEcHHHccCCCcEEEEEeeCCCC
Confidence            46999999999999999999998653

>1mqk_H Antibody 7E2 FV fragment, heavy chain; membrane protein, cytochrome C oxidase, high- resolution structure, immune system; 1.28A {Mus musculus} SCOP: b.1.1.1 PDB: 1ar1_C 3ehb_C* 3hb3_C* 1qle_H* 2otu_B 2gsg_B 2otw_B 1qfw_I* 3ab0_B 1i8k_B 1i8i_B 1vhp_A 1bfv_H* 1cfv_H* 2bfv_H* 1dsf_H

Probab=97.79  E-value=2.2e-05  Score=45.82  Aligned_cols=36  Identities=14%  Similarity=0.184  Sum_probs=26.5

Q ss_pred             EEEEcccCCCCCeeeEEEeEeCC-C-cccceeEEEEEE
Q psy7035          22 SLVLQNVSRARAGHYTCVGSNGE-G-DGQSNAQKTAYD   57 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N~~-G-~~~s~~~~L~V~   57 (70)
                      +|+|.+++.+|+|.|.|.+.+.. + ..-..-..|.|.
T Consensus        80 ~L~I~~~~~~Dsg~Y~C~~~~~~~~~~~fg~gT~L~V~  117 (127)
T 1mqk_H           80 YLQMSSLKSEDTAMYYCVRHEYYYAMDYWGQGTTVTVS  117 (127)
T ss_dssp             EEEECSCCGGGCEEEEEEEEETTTEEEEECCCEEEEEC
T ss_pred             EEEECCCCHHHCEEEEEEEecCCcCcceECCCEEEEEe
Confidence            79999999999999999998851 1 111233567776

>3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B* 1h3p_L

Probab=97.79  E-value=9.3e-06  Score=51.22  Aligned_cols=32  Identities=19%  Similarity=0.377  Sum_probs=25.5

Q ss_pred             EEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEE
Q psy7035          22 SLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAY   56 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V   56 (70)
                      +|.|.+++.+|+|.|+|.|.|....   .++..++
T Consensus       216 ~L~i~~~~~~d~g~Y~C~a~n~~~~---~p~~~~~  247 (252)
T 3bkj_L          216 TLTLTKDEYERHNSYTCEATHKTST---SPIVKSF  247 (252)
T ss_dssp             EEEEEHHHHHHCCEEEEEEECTTCS---SCEEEEE
T ss_pred             EEEEcchhccCCCeEEEEEEeCCCC---CCeeEee
Confidence            5999999999999999999997543   2455554

>3qhz_H Human monoclonal antibody DEL2D1, FAB heavy chain; immunoglobulin, immune recognition, influenza A hemagglutini system; 1.55A {Homo sapiens} PDB: 3lzf_H* 3qrg_H* 3mod_H 3mob_H 3moa_H 3lev_H* 3idg_B 3d0l_B 3d0v_B 3idi_B 3idj_B 3idm_B* 3idn_B* 1tjg_H* 1tjh_H* 1tji_H* 2pr4_H 3drq_B 2p8m_B 2p8p_B ...

Probab=97.79  E-value=3.2e-05  Score=48.23  Aligned_cols=36  Identities=14%  Similarity=0.193  Sum_probs=27.6

Q ss_pred             EEEEcccCCCCCeeeEEEeEeCCC-------cccceeEEEEEE
Q psy7035          22 SLVLQNVSRARAGHYTCVGSNGEG-------DGQSNAQKTAYD   57 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N~~G-------~~~s~~~~L~V~   57 (70)
                      +|.|.+++.+|+|.|.|.+.|..+       ...+....|.|.
T Consensus        84 sL~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~l~V~  126 (232)
T 3qhz_H           84 VLTMTNMDPVDTATYYCARTLRVSGDYVRDFDLWGRGTLVTVS  126 (232)
T ss_dssp             EEEECSCCGGGCEEEEEEEECCC---CCCCCCEECCCEEEEEC
T ss_pred             EEEECcCChhhCEEEEEEEeeccCccccccceeeCCCeEEEEe
Confidence            699999999999999999998632       113345667776

>3ux9_B SCFV antibody; five helices, long loop connecting helix, hydrophobic intera cytokine-immune system complex; 2.80A {Homo sapiens}

Probab=97.78  E-value=1.4e-05  Score=50.34  Aligned_cols=22  Identities=14%  Similarity=0.255  Sum_probs=21.0

Q ss_pred             EEEEcccCCCCCeeeEEEeEeC
Q psy7035          22 SLVLQNVSRARAGHYTCVGSNG   43 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N~   43 (70)
                      +|+|.+++.+|+|.|+|.|.|.
T Consensus       214 ~L~I~~v~~~DsG~Y~C~~~~~  235 (256)
T 3ux9_B          214 YLQMNSLRAEDTAVYYCARYID  235 (256)
T ss_dssp             EEEECSCCGGGCEEEEEEEEET
T ss_pred             EEEECCCChhhCEEEEEEEEcC
Confidence            5999999999999999999996

>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 3tnm_L 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A ...

Probab=97.78  E-value=3.7e-06  Score=51.36  Aligned_cols=26  Identities=15%  Similarity=0.207  Sum_probs=23.0

Q ss_pred             CEEEEcccCCCCCeeeEEEeEeCCCc
Q psy7035          21 QSLVLQNVSRARAGHYTCVGSNGEGD   46 (70)
Q Consensus        21 ~tL~i~~v~~~D~G~Y~C~a~N~~G~   46 (70)
                      .+|.|.++..+|+|.|+|.|.|..+.
T Consensus       175 s~L~i~~~~~~d~g~Y~C~v~~~~~~  200 (211)
T 3tv3_L          175 SYLSLTPEQWKSHRSYSCQVTHEGST  200 (211)
T ss_dssp             EEEEECHHHHHHSSCEEEEEEETTEE
T ss_pred             EEEEEcHHHhCCCCeEEEEEEECCCC
Confidence            46999999999999999999998653

>1p4b_L Antibody variable light chain; FV antibody, antigen peptide binder, SCFV, picomolar binder, immune system; 2.35A {Mus musculus} SCOP: b.1.1.1 PDB: 1p4i_L

Probab=97.76  E-value=2.7e-05  Score=46.49  Aligned_cols=37  Identities=11%  Similarity=-0.020  Sum_probs=27.8

Q ss_pred             EEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEe
Q psy7035          22 SLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDI   58 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~   58 (70)
                      +|+|.+++.+|+|.|.|.+.+.....-..-..|.|.-
T Consensus        79 sL~I~~v~~~DsG~Y~C~~~~~~~~~fg~GT~L~V~~  115 (135)
T 1p4b_L           79 ALTITGAQTEDEAIYFCALWYSNHWVFGGGTKLTVLG  115 (135)
T ss_dssp             EEEEESCCGGGCEEEEEEEECSSCEEECCCEEEEEC-
T ss_pred             EEEECCCChhHCEEEEEEEecCCCCEECCCEEEEEEc
Confidence            7999999999999999999986432233345677753

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B

Probab=97.76  E-value=3e-05  Score=47.11  Aligned_cols=26  Identities=12%  Similarity=0.195  Sum_probs=20.2

Q ss_pred             EEEEcccCCCCCeeeEEEeEeCCCcccc
Q psy7035          22 SLVLQNVSRARAGHYTCVGSNGEGDGQS   49 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N~~G~~~s   49 (70)
                      +|.+.  .+.|+|.|+|.|+|.+|...+
T Consensus       138 ~l~~~--~~~~~g~Y~C~a~N~~~~~~~  163 (171)
T 1ccz_A          138 TMSYQ--WTNLRAPFKCKAVNRVSQESE  163 (171)
T ss_dssp             EEEEE--CSCCSSCEEEEEEETTEEEEE
T ss_pred             EEEEe--ccCCCceEEEEEEcccCcccc
Confidence            44444  488999999999999997533

>3m8o_H Immunoglobulin A1 heavy chain; immunoglobulin fold, immune system; 1.55A {Homo sapiens} PDB: 3qnx_B 3qny_B

Probab=97.76  E-value=4.7e-05  Score=46.97  Aligned_cols=26  Identities=15%  Similarity=0.105  Sum_probs=23.3

Q ss_pred             EEEEcccCCCCCeeeEEEeEeCCCcc
Q psy7035          22 SLVLQNVSRARAGHYTCVGSNGEGDG   47 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N~~G~~   47 (70)
                      +|+|..+...|.|.|+|.|.|..+..
T Consensus       188 ~L~i~~~~~~d~g~ytC~v~~~~~~~  213 (221)
T 3m8o_H          188 QLTLPATQCLAGKSVTCHVKHYTNPS  213 (221)
T ss_dssp             EEEEEGGGSCTTCEEEEEEEETTSCC
T ss_pred             EEEECHHHcCCCCeEEEEEEECCCCc
Confidence            69999999999999999999987643

>2bnu_A TCR alpha chain, T-cell receptor alpha chain C region; superagonist peptide T-cell vaccines, transmembrane, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2bnq_D 2bnr_D 2f54_D 2pyf_A* 2pye_D* 2f53_D 2p5e_D* 2p5w_D* 3mv7_D 3mv8_D 3mv9_D 3utt_D 2cdg_A

Probab=97.76  E-value=5e-05  Score=47.60  Aligned_cols=38  Identities=8%  Similarity=-0.000  Sum_probs=28.2

Q ss_pred             EEEEcccCCCCCeeeEEEeEeCC---Cc-ccceeEEEEEEeC
Q psy7035          22 SLVLQNVSRARAGHYTCVGSNGE---GD-GQSNAQKTAYDIG   59 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N~~---G~-~~s~~~~L~V~~~   59 (70)
                      +|+|.+++.+|+|.|.|.+.+..   +. .......|.|...
T Consensus        73 sL~I~~v~~~Dsg~Y~C~~~~~~~~~~~~~~g~gt~L~V~~~  114 (203)
T 2bnu_A           73 TLYIAASQPGDSATYLCAVRPTSGGSYIPTFGRGTSLIVHPY  114 (203)
T ss_dssp             EEEESSCCGGGCEEEEEEEEECSSSTTCCEECCCEEEEEECC
T ss_pred             EEEEeeCCcccCeEEEEEEEcCcCcceeeeeCCCEEEEEeCC
Confidence            79999999999999999999842   11 1123357888753

>1qfo_A Protein (sialoadhesin); immunoglobulin superfamily, carbohydrate binding, immune system; HET: SIA GAL GLC; 1.85A {Mus musculus} SCOP: b.1.1.1 PDB: 1od7_A* 1oda_A* 1od9_A* 1qfp_A 2bve_A* 1url_A*

Probab=97.76  E-value=3.5e-05  Score=43.93  Aligned_cols=37  Identities=11%  Similarity=0.181  Sum_probs=27.1

Q ss_pred             CEEEEcccCCCCCeeeEEEeEeCCCc--ccceeEEEEEE
Q psy7035          21 QSLVLQNVSRARAGHYTCVGSNGEGD--GQSNAQKTAYD   57 (70)
Q Consensus        21 ~tL~i~~v~~~D~G~Y~C~a~N~~G~--~~s~~~~L~V~   57 (70)
                      .+|.|.+++.+|+|.|.|...+..+.  .....+.|.|.
T Consensus        79 ~sL~I~~v~~~Dsg~Y~C~v~~~~~~~~~~~~~~~L~V~  117 (119)
T 1qfo_A           79 CNLLLKDLKPEDSGTYNFRFEISDSNRWLDVKGTTVTVT  117 (119)
T ss_dssp             CCEEECSCCGGGCEEEEEEEECC-CCEEECSSCEEEEEE
T ss_pred             EEEEEccCCcccCceEEEEEEeCCCceecccCCeEEEEe
Confidence            48999999999999999999875321  11134677775

>3b9v_A Heavy chain variable domain; antibody engineering, phage display, immune system; 1.80A {Homo sapiens} PDB: 1fvc_B 3p9w_B 1fgv_H 2vh5_H*

Probab=97.76  E-value=4.3e-05  Score=43.86  Aligned_cols=22  Identities=18%  Similarity=0.380  Sum_probs=20.9

Q ss_pred             EEEEcccCCCCCeeeEEEeEeC
Q psy7035          22 SLVLQNVSRARAGHYTCVGSNG   43 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N~   43 (70)
                      +|+|.+++.+|+|.|.|.+.+.
T Consensus        80 ~L~I~~~~~~Dsg~Y~C~~~~~  101 (120)
T 3b9v_A           80 YLQMNSLRAEDTAVYYCARWGG  101 (120)
T ss_dssp             EEEECSCCGGGCEEEEEEEECT
T ss_pred             EEEECCCCHHHCEEEEEEEEcC
Confidence            7999999999999999999875

>2jjs_C Leukocyte surface antigen CD47; signal regulatory protein alpha, immunoglobulin superfamily, transmembrane, phosphoprotein, paired receptor; HET: NAG; 1.85A {Homo sapiens} PDB: 2jjt_C* 2vsc_A*

Probab=97.75  E-value=1.4e-05  Score=48.43  Aligned_cols=38  Identities=21%  Similarity=0.424  Sum_probs=29.5

Q ss_pred             cCCEEEEcccCC-CCCeeeEEEeEeCCCcccceeEEEEEE
Q psy7035          19 SNQSLVLQNVSR-ARAGHYTCVGSNGEGDGQSNAQKTAYD   57 (70)
Q Consensus        19 ~~~tL~i~~v~~-~D~G~Y~C~a~N~~G~~~s~~~~L~V~   57 (70)
                      .+.+|.|.+++- +|+|.|+|.+.+..... ...+.|.|.
T Consensus        76 GnaSL~i~~v~~~sD~G~YtC~v~~~~~~~-~~~i~Lkv~  114 (127)
T 2jjs_C           76 GDASLKMDKSDAVSHTGNYTCEVTELTREG-ETIIELKYR  114 (127)
T ss_dssp             TBCCEEEEHHHHHTSCEEEEEEEEETTEEE-EEEEEEEEC
T ss_pred             CcEEEEEcccccccCCcEEEEEEEeCCceE-EEEEEEEEE
Confidence            446999999998 79999999999975543 345666665

>2otu_A FV light chain variable domain; antibody FV polyglutamine complex, immune system; 1.68A {Mus musculus} PDB: 2otw_A 2gsg_A

Probab=97.75  E-value=2.9e-05  Score=44.38  Aligned_cols=23  Identities=17%  Similarity=0.280  Sum_probs=21.3

Q ss_pred             EEEEcccCCCCCeeeEEEeEeCC
Q psy7035          22 SLVLQNVSRARAGHYTCVGSNGE   44 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N~~   44 (70)
                      +|+|.+++.+|+|.|.|.+.+..
T Consensus        77 ~L~I~~~~~~Dsg~Y~C~~~~~~   99 (115)
T 2otu_A           77 YLSISNIQPEDEAIYICGVGDTI   99 (115)
T ss_dssp             EEEESSCCGGGCEEEEEEEEECC
T ss_pred             EEEECCCChhHCEEEEEEEecCC
Confidence            79999999999999999999853

>1u3h_A T-cell receptor alpha-chain; complex, immune system; 2.42A {Mus musculus} SCOP: b.1.1.1 PDB: 1b88_A 1kj2_A* 1kb5_A 1d9k_A*

Probab=96.95  E-value=3.8e-06  Score=47.82  Aligned_cols=23  Identities=22%  Similarity=0.395  Sum_probs=21.5

Q ss_pred             CEEEEcccCCCCCeeeEEEeEeC
Q psy7035          21 QSLVLQNVSRARAGHYTCVGSNG   43 (70)
Q Consensus        21 ~tL~i~~v~~~D~G~Y~C~a~N~   43 (70)
                      .+|+|.+++.+|+|.|.|.+.|.
T Consensus        71 ~~L~I~~v~~~DsG~Y~C~~~~~   93 (110)
T 1u3h_A           71 LSLHIADSQPGDSATYFCAASAN   93 (110)
Confidence            48999999999999999999985

>1jtp_A Single-domain antibody; immunoglobulin, heavy chain antibody, VHH, interface, binding, antibody, hydrolase; 1.90A {Camelus dromedarius} SCOP: b.1.1.1 PDB: 1jto_A 1mel_A 2x89_A

Probab=97.75  E-value=4.7e-05  Score=45.99  Aligned_cols=22  Identities=14%  Similarity=0.400  Sum_probs=20.6

Q ss_pred             EEEEcccCCCCCeeeEEEeEeC
Q psy7035          22 SLVLQNVSRARAGHYTCVGSNG   43 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N~   43 (70)
                      +|+|.+++.+|+|.|.|.+.+.
T Consensus        80 sL~I~~~~~~Dsg~Y~C~~~~~  101 (148)
T 1jtp_A           80 YLLMNSLEPEDTAIYYCAADST  101 (148)
T ss_dssp             EEEECSCCGGGCEEEEEEEECC
T ss_pred             EEEECcCChhHCEEEEEEEEcC
Confidence            7999999999999999999874

>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus musculus} PDB: 2qhr_L 3ffd_B 4dcq_A

Probab=97.75  E-value=8.1e-06  Score=49.83  Aligned_cols=26  Identities=15%  Similarity=0.183  Sum_probs=22.3

Q ss_pred             CEEEEcccCCCCCeeeEEEeEeCCCc
Q psy7035          21 QSLVLQNVSRARAGHYTCVGSNGEGD   46 (70)
Q Consensus        21 ~tL~i~~v~~~D~G~Y~C~a~N~~G~   46 (70)
                      .+|.|..+..+|+|.|+|.|+|..|.
T Consensus       184 s~l~i~~~~~~d~g~Y~C~a~n~~~~  209 (218)
T 3s96_B          184 SFLHLTSDQWRSHNSFTCQVTHEGDT  209 (218)
T ss_dssp             EEEEEEHHHHHTCSCEEEEEEETTEE
T ss_pred             EEEEEeHHHccCCCeEEEEEEeCCCc
Confidence            34888888889999999999998663

>3sob_H Antibody heavy chain, low-density lipoprotein receptor-related protein; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_B 3uls_H 3ulu_D* 3ulv_D*

Probab=97.75  E-value=2.9e-05  Score=49.38  Aligned_cols=23  Identities=17%  Similarity=0.430  Sum_probs=21.0

Q ss_pred             EEEEcccCCCCCeeeEEEeEeCC
Q psy7035          22 SLVLQNVSRARAGHYTCVGSNGE   44 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N~~   44 (70)
                      +|+|.+++.+|+|.|.|.+.+..
T Consensus       103 sL~I~~v~~~DsG~Y~C~~~~~~  125 (256)
T 3sob_H          103 YLQMNSLRAEDTAVYYCARGSGH  125 (256)
T ss_dssp             EEEECSCCGGGCEEEEEEEESSC
T ss_pred             EEEECCCCcccCEEEEEEEecCC
Confidence            49999999999999999999853

>1kxv_C Camelid VHH domain CAB10; beta 8 alpha 8, beta barrel, hydrolase, immune system; 1.60A {Camelus dromedarius} SCOP: b.1.1.1

Probab=97.74  E-value=4.9e-05  Score=43.83  Aligned_cols=22  Identities=18%  Similarity=0.270  Sum_probs=21.0

Q ss_pred             EEEEcccCCCCCeeeEEEeEeC
Q psy7035          22 SLVLQNVSRARAGHYTCVGSNG   43 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N~   43 (70)
                      +|+|.+++.+|+|.|.|.+.+.
T Consensus        79 ~L~I~~~~~~Dsg~Y~C~~~~~  100 (121)
T 1kxv_C           79 YLQMDSLKPDDTAMYYCKPSLR  100 (121)
T ss_dssp             EEEECSCCGGGCEEEEEEEEES
T ss_pred             EEEECCCCHHHCEEEEEEEEec
Confidence            7999999999999999999985

>3dmm_D T-cell surface glycoprotein CD8 beta chain; T cell CO-receptor CD8AB MHC complex, immune response, membrane, MHC I, phosphoprotein, transmembrane; 2.60A {Mus musculus}

Probab=97.74  E-value=6.9e-05  Score=45.33  Aligned_cols=39  Identities=15%  Similarity=0.064  Sum_probs=28.3

Q ss_pred             CEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeC
Q psy7035          21 QSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIG   59 (70)
Q Consensus        21 ~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~   59 (70)
                      -+|+|.+++.+|+|.|.|.+.+.....-..-..|.|...
T Consensus        82 ~sL~I~~l~~~Dsg~Y~C~~~~~~~~~fG~GT~L~V~~~  120 (150)
T 3dmm_D           82 PFLSIMNVKPEDSDFYFCATVGSPKMVFGTGTKLTVVDV  120 (150)
T ss_dssp             CEEEESSCCGGGCEEEEEEEECSSCEEECCCEEEEEESC
T ss_pred             EEEEECCCChhhCEEEEEEEecCCcceECCCEEEEEeCC
Confidence            489999999999999999998642222223357788743

>3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus musculus}

Probab=97.74  E-value=5.7e-06  Score=51.21  Aligned_cols=25  Identities=24%  Similarity=0.433  Sum_probs=21.3

Q ss_pred             CEEEEcccCCCCCeeeEEEeEeCCC
Q psy7035          21 QSLVLQNVSRARAGHYTCVGSNGEG   45 (70)
Q Consensus        21 ~tL~i~~v~~~D~G~Y~C~a~N~~G   45 (70)
                      .+|.|..++.+|+|.|+|.|+|...
T Consensus       199 s~L~i~~~~~~d~g~Y~C~a~n~~~  223 (233)
T 3bqu_C          199 STLTLTKDEYERHNSYTCEATHKTS  223 (233)
T ss_dssp             EEEEEEHHHHHTCCCEEEEEEEC--
T ss_pred             EEEEECHHHhCCCCCEEEEEEeCCC
Confidence            3699999999999999999999744

>3noi_A Natural cytotoxicity triggering receptor 3; immune system, innate immunity, immunoglobulin-like I2 type natural killer cell activation; HET: 1PG; 1.84A {Homo sapiens} PDB: 3pv6_B*

Probab=97.74  E-value=2.6e-05  Score=44.87  Aligned_cols=37  Identities=22%  Similarity=0.300  Sum_probs=27.0

Q ss_pred             CEEEEcccCCCCCeeeEEEeEeC-CCcccceeEEEEEE
Q psy7035          21 QSLVLQNVSRARAGHYTCVGSNG-EGDGQSNAQKTAYD   57 (70)
Q Consensus        21 ~tL~i~~v~~~D~G~Y~C~a~N~-~G~~~s~~~~L~V~   57 (70)
                      -+|+|.+++.+|+|.|.|.+... .+.....-..|.|.
T Consensus        81 ~sL~I~~v~~~DsG~Y~C~v~~~~~~~~fg~GT~l~V~  118 (120)
T 3noi_A           81 AELHIRDVRGHDASIYVCRVEVLGLGVGTGNGTRLVVE  118 (120)
T ss_dssp             CCEEESSCCGGGCEEEEEEEEETTTEEEECCCEEEEEE
T ss_pred             EEEEEecCChhhCEEEEEEEEECCccceeCCCeEEEEe
Confidence            38999999999999999999854 22233344556664

>1smo_A Triggering receptor expressed on myeloid cells 1; activating receptors, TREM-1, innate immune system receptor, system; HET: TLA; 1.47A {Homo sapiens} SCOP: b.1.1.1

Probab=97.72  E-value=2.8e-05  Score=45.43  Aligned_cols=39  Identities=15%  Similarity=0.235  Sum_probs=27.8

Q ss_pred             EEEEcccCCCCCeeeEEEeEeCCCcc--cceeEEEEEEeCC
Q psy7035          22 SLVLQNVSRARAGHYTCVGSNGEGDG--QSNAQKTAYDIGL   60 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N~~G~~--~s~~~~L~V~~~p   60 (70)
                      +|+|.+++.+|+|.|.|.........  ....+.|.|.-+|
T Consensus        77 ~LtI~~l~~~Dsg~Y~C~~~~~~~~~~~~~~~v~L~V~~~~  117 (119)
T 1smo_A           77 RVRMVNLQVEDSGLYQCVIYQPPKEPHMLFDRIRLVVTKGF  117 (119)
T ss_dssp             EEEECSCCGGGCEEEEEEECCTTSCCEECSCEEEEEC----
T ss_pred             EEEECCCCHHHCEEEEEEEEcCCCCcceEEEEEEEEEECCC
Confidence            79999999999999999987654222  2357888887543

>1hxm_A Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=97.72  E-value=7.3e-05  Score=47.68  Aligned_cols=45  Identities=13%  Similarity=0.116  Sum_probs=31.6

Q ss_pred             EEEEcccCCCCCeeeEEEeEeCCC------c-ccceeEEEEEEeCCCCCCCC
Q psy7035          22 SLVLQNVSRARAGHYTCVGSNGEG------D-GQSNAQKTAYDIGLGIPAEP   66 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N~~G------~-~~s~~~~L~V~~~p~~~~~p   66 (70)
                      +|.|.+++.+|+|.|.|.+.+..+      . .......|.|......+.+|
T Consensus        76 sL~I~~v~~~Dsg~Y~C~~~~~~~~~~~~~~~~~g~gt~L~V~~~~~~~~~P  127 (229)
T 1hxm_A           76 VLKILAPSERDEGSYYCACDTLGMGGEYTDKLIFGKGTRVTVEPRSQPHTKP  127 (229)
T ss_dssp             EEEESSCCGGGCEEEEEEEECCCCSSSCCCCCEEBCCEEEEEECCSCCCBCC
T ss_pred             EEEECcCCHhHCeEEEEEEecCCCcccccchhhcCccEEEEEeccCCCCcCC
Confidence            899999999999999999998631      1 12234578887533333444

>2gjj_A A21 single-chain antibody fragment against ERBB2; IG family, SCFV, immune system; 2.10A {Mus musculus} PDB: 3h3b_C

Probab=97.72  E-value=3.9e-05  Score=49.17  Aligned_cols=23  Identities=22%  Similarity=0.458  Sum_probs=21.7

Q ss_pred             CEEEEcccCCCCCeeeEEEeEeC
Q psy7035          21 QSLVLQNVSRARAGHYTCVGSNG   43 (70)
Q Consensus        21 ~tL~i~~v~~~D~G~Y~C~a~N~   43 (70)
                      .+|+|.+++.+|+|.|+|.|.|.
T Consensus       217 ~~L~I~~v~~~DsG~Y~C~a~n~  239 (264)
T 2gjj_A          217 AFMQLNSLTSEDSADYYCVRSGN  239 (264)
T ss_dssp             EEEEECSCCGGGCEEEEEEEECS
T ss_pred             EEEEECcCCcccCEEEEEEEecC
Confidence            48999999999999999999995

>1sq2_N Novel antigen receptor; immunoglobulin fold, protein-protein complex, hydrolase/immune system complex; 1.45A {Ginglymostoma cirratum} SCOP: b.1.1.1 PDB: 1t6v_N

Probab=97.71  E-value=1.7e-05  Score=45.45  Aligned_cols=23  Identities=22%  Similarity=0.367  Sum_probs=21.2

Q ss_pred             CEEEEcccCCCCCeeeEEEeEeC
Q psy7035          21 QSLVLQNVSRARAGHYTCVGSNG   43 (70)
Q Consensus        21 ~tL~i~~v~~~D~G~Y~C~a~N~   43 (70)
                      .+|+|.+++.+|+|.|.|.+.|.
T Consensus        66 ~~L~I~~~~~~DsG~Y~C~~~~~   88 (113)
T 1sq2_N           66 FSLRINDLTVEDGGTYRCGLGVA   88 (113)
T ss_dssp             EEEEECSCCGGGCEEEEEEECBT
T ss_pred             EEEEECCCChhhCEEEEEEEEeC
Confidence            37999999999999999999984

>2oi9_C V beta, T cell receptor beta chain; TCR, MHC, immune system; 2.35A {Mus musculus} PDB: 2e7l_C

Probab=97.71  E-value=4.6e-05  Score=44.33  Aligned_cols=36  Identities=17%  Similarity=0.239  Sum_probs=25.8

Q ss_pred             EEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEE
Q psy7035          22 SLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYD   57 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~   57 (70)
                      +|+|.+++.+|+|.|.|.+.+.....-..-..|.|.
T Consensus        75 sL~I~~v~~~DsG~Y~C~~~~~~~~~fg~GT~l~v~  110 (121)
T 2oi9_C           75 SLTLESATPSQTSVYFCASGGGGTLYFGAGTRLSVL  110 (121)
T ss_dssp             EEEESSCCGGGCEEEEEEEESSSCEEECCCEEEEEE
T ss_pred             EEEECCCCHHHCEEEEEEEccCCccEECCCeEEEEe
Confidence            799999999999999999987522122223455554

>1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer, SCFV, variable domain, immune system; 2.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=97.71  E-value=3.4e-05  Score=47.88  Aligned_cols=23  Identities=17%  Similarity=0.244  Sum_probs=21.0

Q ss_pred             CEEEEcccCCCCCeeeEEEeEeC
Q psy7035          21 QSLVLQNVSRARAGHYTCVGSNG   43 (70)
Q Consensus        21 ~tL~i~~v~~~D~G~Y~C~a~N~   43 (70)
                      .+|+|.+++.+|+|.|+|.|.+.
T Consensus       198 ~~L~I~~v~~~D~G~Y~C~a~~~  220 (240)
T 1moe_A          198 AYLQLTSLTSEDTAVYYCAPFGY  220 (240)
T ss_dssp             EEEEECSCCGGGCEEEEEEECST
T ss_pred             EEEEECcCCHHHCEEEEEEEEec
Confidence            47999999999999999999953

>1kgc_D T-cell receptor alpha chain; LC13 clone, immune system; 1.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1mi5_D 3kpr_D 3kps_D 3o6f_C 3t0e_C 3pqy_D 2esv_D 3dxa_D 3dx9_A

Probab=97.71  E-value=4.9e-05  Score=47.87  Aligned_cols=39  Identities=15%  Similarity=0.210  Sum_probs=28.2

Q ss_pred             EEEEcccCCCCCeeeEEEeEeCCC-----cccceeEEEEEEeCC
Q psy7035          22 SLVLQNVSRARAGHYTCVGSNGEG-----DGQSNAQKTAYDIGL   60 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N~~G-----~~~s~~~~L~V~~~p   60 (70)
                      +|+|.+++.+|+|.|.|.+.+..+     ........|.|...+
T Consensus        71 sL~I~~~~~~Dsg~Y~C~~~~~~~~~~~~~~~g~gt~L~V~~~~  114 (206)
T 1kgc_D           71 TLILHRATLRDAAVYYCILPLAGGTSYGKLTFGQGTILTVHPNI  114 (206)
T ss_dssp             EEEESSCCGGGCEEEEEECCCCSTTCCCCCCCCCCEEEEEECCC
T ss_pred             EEEECCCCcccCccEEEEEecccCCCcccceECCCEEEEEeCCC
Confidence            799999999999999999987411     111234578887543

>3mlr_H Human monoclonal anti-HIV-1 GP120 V3 antibody 255 heavy chain; human monoclonal antibody, FAB, third variable antibody-antigen interaction; 1.80A {Homo sapiens} PDB: 3mls_H 3mlt_H 3mlu_H 3mlv_H

Probab=97.70  E-value=2.7e-05  Score=48.78  Aligned_cols=22  Identities=18%  Similarity=0.283  Sum_probs=20.5

Q ss_pred             EEEEcccCCCCCeeeEEEeEeC
Q psy7035          22 SLVLQNVSRARAGHYTCVGSNG   43 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N~   43 (70)
                      +|+|.+++.+|+|.|.|.+.+.
T Consensus        80 sL~I~~v~~~DsG~Y~C~~~~~  101 (226)
T 3mlr_H           80 YLQWTTLQASDTGKYFCTRLYL  101 (226)
T ss_dssp             EEEESSCCGGGCEEEEEEEEEE
T ss_pred             EEEECCCCcccCEEEEEeEccC
Confidence            5999999999999999999875

>1fo0_B Protein (BM3.3 T cell receptor beta-chain); class I MHC, H-2KB, TCR-PMHC complex, immune system; 2.50A {Mus musculus} SCOP: b.1.1.1 PDB: 1nam_B* 2ol3_B* 1kb5_B 1kj2_B*

Probab=97.70  E-value=4.3e-05  Score=43.59  Aligned_cols=22  Identities=23%  Similarity=0.265  Sum_probs=20.8

Q ss_pred             EEEEcccCCCCCeeeEEEeEeC
Q psy7035          22 SLVLQNVSRARAGHYTCVGSNG   43 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N~   43 (70)
                      +|+|.+++.+|+|.|.|.+.+.
T Consensus        75 ~L~I~~~~~~Dsg~Y~C~~~~~   96 (112)
T 1fo0_B           75 ELRLQVANMSQGRTLYCTCSAD   96 (112)
T ss_dssp             EEEEEEESCCSCEEEEEEEESS
T ss_pred             eEEEcCCCHhHCEEEEEEEEcC
Confidence            8999999999999999999874

>2eys_A NKT15; natural killer T cell receptor, immune system; 2.21A {Homo sapiens} PDB: 2eyr_A 2eyt_A 3huj_E* 3tyf_A 3tzv_A* 3sdx_E* 2po6_C* 2cde_A 3to4_C*

Probab=97.70  E-value=5.5e-05  Score=47.96  Aligned_cols=38  Identities=18%  Similarity=0.147  Sum_probs=27.8

Q ss_pred             EEEEcccCCCCCeeeEEEeEeCC---C-cccceeEEEEEEeC
Q psy7035          22 SLVLQNVSRARAGHYTCVGSNGE---G-DGQSNAQKTAYDIG   59 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N~~---G-~~~s~~~~L~V~~~   59 (70)
                      +|+|.+++.+|+|.|.|.+.+..   + .....-..|.|...
T Consensus        76 sL~I~~~~~~Dsg~Y~C~~~~~~~~~~~~~fg~gt~L~V~~~  117 (210)
T 2eys_A           76 SLHITASQLSDSASYICVVSDRGSTLGRLYFGRGTQLTVWPD  117 (210)
T ss_dssp             EEEESSCCGGGCEEEEEEEESCSSTTCCEEECCCEEEEEECC
T ss_pred             EEEEccCCcccCceEEEEEEccCCCcccceECCCEEEEEECC
Confidence            89999999999999999998842   1 11123357888743

>1j05_H T84.66 antibody, anti-CEA MAB T84.66, heavy chain; immunoglobulin, immune system; 1.50A {Mus musculus} SCOP: b.1.1.1 PDB: 1dvf_D 1mvu_B 1ap2_B 2ap2_B

Probab=97.70  E-value=6e-05  Score=43.38  Aligned_cols=22  Identities=18%  Similarity=0.258  Sum_probs=21.0

Q ss_pred             EEEEcccCCCCCeeeEEEeEeC
Q psy7035          22 SLVLQNVSRARAGHYTCVGSNG   43 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N~   43 (70)
                      +|+|.+++.+|+|.|.|.+.+.
T Consensus        80 ~L~I~~~~~~Dsg~Y~C~~~~~  101 (121)
T 1j05_H           80 YLQLTSLTSEDTAVYYCAPFGY  101 (121)
T ss_dssp             EEEECSCCGGGCEEEEEEEEBT
T ss_pred             EEEECCCCHHHCEEEEEEEEcC
Confidence            7999999999999999999986

>1n4x_H Immunoglobulin heavy chain variable region; immune system; 1.70A {Mus musculus} SCOP: b.1.1.1 PDB: 3iy4_B

Probab=97.70  E-value=3.2e-05  Score=44.40  Aligned_cols=22  Identities=23%  Similarity=0.434  Sum_probs=20.9

Q ss_pred             EEEEcccCCCCCeeeEEEeEeC
Q psy7035          22 SLVLQNVSRARAGHYTCVGSNG   43 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N~   43 (70)
                      +|+|.+++.+|+|.|.|.+.+.
T Consensus        80 ~L~I~~~~~~DsG~Y~C~~~~~  101 (120)
T 1n4x_H           80 FLQINNLKNEDTATYFCVRDRH  101 (120)
T ss_dssp             EEEECSCCGGGCEEEEEEEESS
T ss_pred             EEEECCCCHHHCEEEEEEEEcc
Confidence            7999999999999999999875

>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C region, hinge region, immunoglobulin; HET: NAG FUL NDG BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=97.70  E-value=9.2e-06  Score=54.89  Aligned_cols=37  Identities=11%  Similarity=0.175  Sum_probs=29.7

Q ss_pred             CEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEe
Q psy7035          21 QSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDI   58 (70)
Q Consensus        21 ~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~   58 (70)
                      .+|.|.+++.+|+|.|+|.|.|..+. .+..+.|.|..
T Consensus        78 ~~L~I~~v~~~D~G~Y~C~~~~~~~~-~~~~~~l~V~~  114 (434)
T 1igy_B           78 ANIHLSSLTSDDSAVYYCVREGEVPY-WGQGTTVTVSS  114 (434)
T ss_dssp             BCEEECSBCGGGCSEECCCCSSSSCC-CCCCEECEECC
T ss_pred             EEEEECCCChHHCEEEEEEEEccccc-cCCceEEEEcc
Confidence            38999999999999999999996443 23456788863

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	70
d1biha4	89	b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecr	1e-04
d1f97a1	102	b.1.1.1 (A:27-128) Junction adhesion molecule, JAM	2e-04
d2c9aa1	96	b.1.1.4 (A:184-279) Receptor-type tyrosine-protein	4e-04
d1koaa1	97	b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorha	5e-04
d1biha1	94	b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropi	7e-04
d2cqva1	101	b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [T	9e-04
d1gl4b_	89	b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus muscu	0.001
d1gxea_	130	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	0.001
d1cs6a4	89	b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gall	0.002
d1x44a1	90	b.1.1.4 (A:8-97) Myosin-binding protein C, slow-ty	0.002
d1tnna_	91	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	0.002
d3dara1	97	b.1.1.4 (A:153-249) Fibroblast growth factor recep	0.003
d1fhga_	102	b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo)	0.004
d1cs6a3	91	b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gall	0.004

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 34.7 bits (79), Expect = 1e-04
 Identities = 10/37 (27%), Positives = 16/37 (43%)

Query: 16 VIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQ 52
            V++  LV++ V     G+Y C  +N  GD      
Sbjct: 49 ATVTDSGLVIKGVKNGDKGYYGCRATNEHGDKYFETL 85

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 34.3 bits (77), Expect = 2e-04
 Identities = 10/37 (27%), Positives = 15/37 (40%)

Query: 16 VIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQ 52
          V  S+  +   +V+R   G YTC+ S   G       
Sbjct: 60 VTFSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVS 96

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.5 bits (75), Expect = 4e-04
 Identities = 10/31 (32%), Positives = 14/31 (45%)

Query: 20 NQSLVLQNVSRARAGHYTCVGSNGEGDGQSN 50
            S  + N ++  AG Y C+     G G SN
Sbjct: 59 IASFNVVNTTKRDAGKYRCMIRTEGGVGISN 89

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 33.3 bits (75), Expect = 5e-04
 Identities = 7/33 (21%), Positives = 10/33 (30%)

Query: 20 NQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQ 52
          +  L +  V     G YT    N  G  +    
Sbjct: 56 DYGLTINRVKGDDKGEYTVRAKNSYGTKEEIVF 88

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 32.7 bits (73), Expect = 7e-04
 Identities = 11/38 (28%), Positives = 13/38 (34%), Gaps = 3/38 (7%)

Query: 20 NQSLVLQNVSRARAGHYTCVGSNGEGDGQSNA---QKT 54
            SLV      +  GHY C      G   S     +KT
Sbjct: 57 EGSLVFLRPQASDEGHYQCFAETPAGVASSRVISFRKT 94

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.5 bits (73), Expect = 9e-04
 Identities = 7/33 (21%), Positives = 11/33 (33%)

Query: 20 NQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQ 52
             L +    +   G YT +  N  G  Q+   
Sbjct: 55 GSKLTILAARQEHCGCYTLLVENKLGSRQAQVN 87

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 32.3 bits (72), Expect = 0.001
 Identities = 13/36 (36%), Positives = 17/36 (47%)

Query: 17 IVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQ 52
          +  N  L ++NV  + AG Y C GSN     Q  A 
Sbjct: 50 MDFNGILTIRNVQPSDAGTYVCTGSNMFAMDQGTAT 85

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.7 bits (73), Expect = 0.001
 Identities = 8/38 (21%), Positives = 12/38 (31%)

Query: 20  NQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYD 57
                ++   +   G YT    N  G+ Q N      D
Sbjct: 93  RSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVKVID 130

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 31.4 bits (70), Expect = 0.002
 Identities = 8/30 (26%), Positives = 13/30 (43%)

Query: 23 LVLQNVSRARAGHYTCVGSNGEGDGQSNAQ 52
          L    +    +G Y CV  N  G   ++A+
Sbjct: 55 LRFSKLVLEDSGMYQCVAENKHGTVYASAE 84

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 31.3 bits (70), Expect = 0.002
 Identities = 5/27 (18%), Positives = 14/27 (51%)

Query: 19 SNQSLVLQNVSRARAGHYTCVGSNGEG 45
              L+++  ++A A  Y+ + + G+ 
Sbjct: 55 KKHILIIEGATKADAAEYSVMTTGGQS 81

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 31.4 bits (70), Expect = 0.002
 Identities = 7/33 (21%), Positives = 15/33 (45%)

Query: 20 NQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQ 52
            +  + +V  +  G+Y+ V  N EG  ++   
Sbjct: 54 KSTFEISSVQASDEGNYSVVVENSEGKQEAEFT 86

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

 Score = 30.9 bits (69), Expect = 0.003
 Identities = 10/34 (29%), Positives = 17/34 (50%)

Query: 19 SNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQ 52
           + SL++++V  +  G+YTCV  N  G       
Sbjct: 60 QHWSLIMESVVPSDKGNYTCVVENEYGSINHTYH 93

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

 Score = 31.0 bits (69), Expect = 0.004
 Identities = 7/27 (25%), Positives = 9/27 (33%)

Query: 26 QNVSRARAGHYTCVGSNGEGDGQSNAQ 52
            V       YTC   N  G+    A+
Sbjct: 70 SEVCGDDDAKYTCKAVNSLGEATCTAE 96

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 30.6 bits (68), Expect = 0.004
 Identities = 9/33 (27%), Positives = 12/33 (36%)

Query: 20 NQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQ 52
             L +QNV     G Y C   N +G      +
Sbjct: 54 EPLLHIQNVDFEDEGTYECEAENIKGRDTYQGR 86

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	70
d1l6za2	96	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-t	99.66
d2cqva1	101	Telokin {Human (Homo sapiens) [TaxId: 9606]}	99.56
d1rhfa1	91	Tyrosine-protein kinase receptor tyro3, N-terminal	99.45
d1biha1	94	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.42
d1f2qa2	89	IgE high affinity receptor alpha subunit {Human (H	99.4
d1biha3	97	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.4
d1cs6a4	89	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.39
d2fcba2	88	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.38
d1g1ca_	98	Titin {Human (Homo sapiens), different modules [Ta	99.36
d1he7a_	107	High affinity nerve growth factor receptor TrkA, d	99.35
d1fhga_	102	Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103	99.35
d1wwca_	105	NT3 binding domain of trkC receptor {Human (Homo s	99.33
d1koaa1	97	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.33
d1wwbx_	103	Ligand binding domain of trkB receptor {Human (Hom	99.32
d1olza1	92	Semaphorin 4d Ig-like domain {Human (Homo sapiens)	99.32
d1fnla2	89	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.31
d1biha4	89	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.31
d1epfa1	97	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.29
d3dara1	97	Fibroblast growth factor receptor, FGFR {Human (Ho	99.29
d1cs6a1	97	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.29
d1wiua_	93	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.27
d1tnna_	91	Titin {Human (Homo sapiens), different modules [Ta	99.27
d1gl4b_	89	Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId:	99.26
d1iray2	103	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.26
d1qz1a3	100	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.24
d2c9aa1	96	Receptor-type tyrosine-protein phosphatase mu {Hum	99.24
d1cs6a2	105	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.21
d1iray1	101	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.19
d1epfa2	92	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.18
d1f97a2	110	Junction adhesion molecule, JAM, C-terminal domain	99.18
d1rhfa2	85	Tyrosine-protein kinase receptor tyro3, second dom	99.18
d1hnga1	98	CD2, first domain {Rat (Rattus norvegicus) [TaxId:	99.16
d1vcaa2	90	Vascular cell adhesion molecule-1 (VCAM-1) {Human	99.14
d1gsma1	90	Mucosal addressin cell adhesion molecule-1 (MADCAM	99.12
d1cs6a3	91	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.12
d1gxea_	130	Cardiac myosin binding protein C, different domain	99.1
d1n26a1	93	Interleukin-6 receptor alpha chain, N-terminal dom	99.1
d1nbqa2	104	Junction adhesion molecule, JAM, C-terminal domain	99.1
d2aw2a1	104	B- and T-lymphocyte attenuator CD272 {Human (Homo	99.08
d2nxyb2	84	CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9	99.07
d2ifga1	92	High affinity nerve growth factor receptor TrkA, d	99.06
d1tiua_	89	Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxI	99.02
d2crya1	115	Kin of IRRE-like protein 3, KIRREL3 {Human (Homo s	99.01
d2dava1	113	Myosin-binding protein C, slow-type {Human (Homo s	99.01
d1pd6a_	94	Cardiac myosin binding protein C, different domain	99.0
d1nbqa1	105	Junction adhesion molecule, JAM, N-terminal domain	98.99
d1fnla1	84	Fc gamma receptor ectodomain (CD32) {Human (Homo s	98.97
d1f97a1	102	Junction adhesion molecule, JAM, N-terminal domain	98.97
d2fcba1	85	Fc gamma receptor ectodomain (CD32) {Human (Homo s	98.97
d1x44a1	90	Myosin-binding protein C, slow-type {Human (Homo s	98.96
d1f2qa1	82	IgE high affinity receptor alpha subunit {Human (H	98.96
d2fdbp2	109	Fibroblast growth factor receptor, FGFR {Human (Ho	98.96
d2avga1	110	Cardiac myosin binding protein C, different domain	98.94
d2oz4a3	84	Intercellular adhesion molecule-1, ICAM-1 {Human (	98.9
d3b5ha1	101	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	98.9
d1l6za1	107	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-t	98.86
d1ccza1	93	CD2-binding domain of CD58, N-terminal domain {Hum	98.82
d1pkoa_	126	Myelin oligodendrocyte glycoprotein (MOG) {Rat (Ra	98.81
d1iama1	103	Intercellular cell adhesion molecule-1 (ICAM-1) {H	98.75
d1iray3	107	Type-1 interleukin-1 receptor {Human (Homo sapiens	98.68
d1biha2	111	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	98.63
d1zxqa1	106	Intercellular cell adhesion molecule-2 (ICAM-2) {H	98.52
d1eaja_	124	Coxsackie virus and adenovirus receptor (Car), dom	98.42
d1ucta1	99	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	98.35
d1neua_	119	Myelin membrane adhesion molecule P0 {Rat (Rattus	98.27
d2nxyb1	97	CD4 V-set domains {Human (Homo sapiens) [TaxId: 96	98.11
d1dr9a1	105	CD80, N-terminal domain {Human (Homo sapiens) [Tax	98.1
d1xeda_	116	Polymeric-immunoglobulin receptor, PIGR {Human (Ho	98.05
d1ncna_	110	CD86 (b7-2), N-terminal domain {Human (Homo sapien	98.03
d1hkfa_	108	NK cell activating receptor NKP44 {Human (Homo sap	97.86
d1olla1	95	Ligand binding domain of NK receptor NKp46 {Human	97.82
d1hnfa1	101	CD2, first domain {Human (Homo sapiens) [TaxId: 96	97.78
d1qfoa_	118	N-terminal domain of sialoadhesin {Mouse (Mus musc	97.75
d2cdea1	114	T-cell antigen receptor {Human (Homo sapiens), bet	97.68
d2g5ra1	121	N-terminal domain of sialic acid binding Ig-like l	97.64
d1smoa_	113	TREM-1 (triggering receptor expressed on myeloid c	97.38
d1vcaa1	109	Vascular cell adhesion molecule-1 (VCAM-1) {Human	97.36
d2atpb1	115	CD8 {Mouse (Mus musculus), beta-chain [TaxId: 1009	97.34
d1tvda_	116	T-cell antigen receptor {Human (Homo sapiens), del	97.32
d1ospl1	107	Immunoglobulin light chain kappa variable domain,	97.28
d2ak4d1	114	T-cell antigen receptor {Human (Homo sapiens), alp	97.28
d1i9ea_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	97.27
d1kcvl1	107	Immunoglobulin light chain kappa variable domain,	97.27
d1i8ka_	106	Immunoglobulin light chain kappa variable domain,	97.26
d1j1pl_	107	Immunoglobulin light chain kappa variable domain,	97.26
d1j8hd1	115	T-cell antigen receptor {Human (Homo sapiens), alp	97.24
d1ogad1	115	T-cell antigen receptor {Human (Homo sapiens), alp	97.24
d2gsia1	111	Immunoglobulin light chain kappa variable domain,	97.19
d1j05a_	111	Immunoglobulin light chain kappa variable domain,	97.18
d2fx7l1	108	Immunoglobulin light chain kappa variable domain,	97.18
d1c5cl1	107	Immunoglobulin light chain kappa variable domain,	97.17
d2esvd1	110	T-cell antigen receptor {Human (Homo sapiens), alp	97.16
d1nkra1	96	Killer cell inhibitory receptor {Human (Homo sapie	97.14
d1lp9e1	115	T-cell antigen receptor {Mouse (Mus musculus), alp	97.13
d1mexl1	107	Immunoglobulin light chain kappa variable domain,	97.1
d1op3k1	106	Immunoglobulin light chain kappa variable domain,	97.08
d1jhll_	108	Immunoglobulin light chain kappa variable domain,	97.08
d1d5il1	107	Immunoglobulin light chain kappa variable domain,	97.08
d2bnqd1	113	T-cell antigen receptor {Human (Homo sapiens), alp	97.07
d1nkra2	99	Killer cell inhibitory receptor {Human (Homo sapie	97.07
d1lk3l1	106	Immunoglobulin light chain kappa variable domain,	97.06
d1tjgl1	107	Immunoglobulin light chain kappa variable domain,	97.05
d8faba1	103	Immunoglobulin light chain lambda variable domain,	97.03
d1olla2	93	Ligand binding domain of NK receptor NKp46 {Human	97.03
d1ncwl1	112	Immunoglobulin light chain kappa variable domain,	97.03
d1vesa_	113	Novel antigen receptor 12Y-2 {Spotted wobbegong (O	96.99
d1ugna1	96	Ligand binding domain of lir-1 (ilt2) {Human (Homo	96.98
d1nezg_	122	CD8 {Mouse (Mus musculus) [TaxId: 10090]}	96.96
d2gj6d1	94	T-cell antigen receptor {Mouse (Mus musculus), bet	96.96
d1akjd_	114	CD8 {Human (Homo sapiens) [TaxId: 9606]}	96.92
d1fo0a_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	96.92
d1u9ka_	110	TREM-1 (triggering receptor expressed on myeloid c	96.92
d1ucta2	96	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	96.9
d3bp5a1	114	Programmed cell death protein 1, PD1, extracellula	96.88
d1bwwa_	109	Immunoglobulin light chain kappa variable domain,	96.87
d1cd0a_	111	Immunoglobulin light chain lambda variable domain,	96.87
d1h5ba_	113	T-cell antigen receptor {Mouse (Mus musculus), alp	96.86
d1n4xl_	113	Immunoglobulin light chain kappa variable domain,	96.84
d2aq2a1	110	T-cell antigen receptor {Mouse (Mus musculus), bet	96.83
d1oaql_	110	Immunoglobulin light chain lambda variable domain,	96.75
d1u3ha1	110	T-cell antigen receptor {Mouse (Mus musculus), alp	96.74
d1mjul1	112	Immunoglobulin light chain kappa variable domain,	96.72
d1lgva1	112	Immunoglobulin light chain lambda variable domain,	96.69
d3cx5k1	107	Immunoglobulin light chain kappa variable domain,	96.68
d1yjdc1	118	CD28 {Human (Homo sapiens) [TaxId: 9606]}	96.67
d1a0ql1	106	Immunoglobulin light chain kappa variable domain,	96.64
d1ymmd1	96	T-cell antigen receptor {Human (Homo sapiens), alp	96.64
d1kgce1	112	T-cell antigen receptor {Human (Homo sapiens), bet	96.54
d1rzfl1	111	Immunoglobulin light chain lambda variable domain,	96.53
d1dqta_	117	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	96.47
d1mqkl_	109	Immunoglobulin light chain kappa variable domain,	96.45
d1q9ra1	113	Immunoglobulin light chain kappa variable domain,	96.45
d1sq2n_	112	Novel antigen receptor (against lysozyme) {Nurse s	96.44
d2esve1	111	T-cell antigen receptor {Human (Homo sapiens), bet	96.44
d1i8lc_	118	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	96.35
d2ntsp1	113	T-cell antigen receptor {Human (Homo sapiens), bet	96.34
d1bd2d1	111	T-cell antigen receptor {Human (Homo sapiens), alp	96.3
d1j8he1	113	T-cell antigen receptor {Human (Homo sapiens), bet	96.21
d1kgcd1	112	T-cell antigen receptor {Human (Homo sapiens), alp	96.2
d1ogae1	114	T-cell antigen receptor {Human (Homo sapiens), bet	96.19
d1yqvl1	104	Immunoglobulin light chain kappa variable domain,	96.18
d2ij0c1	118	T-cell antigen receptor {Human (Homo sapiens), bet	96.12
d1fltx_	95	Second domain of the Flt-1 receptor {Human (Homo s	96.11
d1w72l1	109	Immunoglobulin light chain lambda variable domain,	96.09
d1ac6a_	110	T-cell antigen receptor {Mouse (Mus musculus), alp	96.09
d1xaua_	104	B and T lymphocyte attenuator, Btla {Mouse (Mus mu	96.08
d1ugna2	98	Ligand binding domain of lir-1 (ilt2) {Human (Homo	96.01
d2cdeb1	112	T-cell antigen receptor {Human (Homo sapiens), bet	96.01
d2rhea_	114	Immunoglobulin light chain lambda variable domain,	95.95
d2bnub1	112	T-cell antigen receptor {Human (Homo sapiens), bet	95.93
d1f3rb2	119	Immunoglobulin light chain kappa variable domain,	95.91
d1nfdb1	113	T-cell antigen receptor {Mouse (Mus musculus), bet	95.9
d1nfde1	108	Immunoglobulin light chain lambda variable domain,	95.85
d1ypzf1	120	T-cell antigen receptor {Human (Homo sapiens), gam	95.81
d1hxma1	120	T-cell antigen receptor {Human (Homo sapiens), gam	95.56
d1hxmb1	123	T-cell antigen receptor {Human (Homo sapiens), del	95.41
d1xiwa_	91	CD3 epsilon chain ectodomain fragment {Human (Homo	95.19
d3b5ha2	80	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	94.59
d3d85d1	87	The p40 domain of interleukin-12 (IL-12 beta chain	94.32
d1dn0b1	120	Immunoglobulin heavy chain variable domain, VH {Hu	94.06
d1eapb1	119	Immunoglobulin heavy chain variable domain, VH {Mo	93.96
d1lk2b_	99	beta2-microglobulin {Mouse (Mus musculus) [TaxId:	93.82
d2agjh1	120	Immunoglobulin heavy chain variable domain, VH {En	93.67
d1oari_	103	Immunoglobulin heavy chain variable domain, VH {Ra	93.13
d1i3ua_	127	Camelid IG heavy chain variable domain, VHh {Llama	92.9
d1k5nb_	100	beta2-microglobulin {Human (Homo sapiens) [TaxId:	92.73
d1etzb1	126	Immunoglobulin heavy chain variable domain, VH {Mo	92.41
d1nlbh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	92.28
d1iqdb1	117	Immunoglobulin heavy chain variable domain, VH {Hu	92.21
d1qnzh_	119	Immunoglobulin heavy chain variable domain, VH {Mo	92.21
d1kxvc_	119	Camelid IG heavy chain variable domain, VHh {Camel	92.21
d1f3dh1	115	Immunoglobulin heavy chain variable domain, VH {Mo	92.02
d2b1hh1	124	Immunoglobulin heavy chain variable domain, VH {En	92.0
d1rz7h1	119	Immunoglobulin heavy chain variable domain, VH {Hu	91.97
d1jbja1	86	CD3 gamma chain ectodomain fragment {Mouse (Mus mu	91.9
d2fbjh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	91.87
d1sjva_	107	Camelid IG heavy chain variable domain, VHh {Llama	91.87
d1jpth1	117	Immunoglobulin heavy chain variable domain, VH {En	91.82
d1ai1h1	120	Immunoglobulin heavy chain variable domain, VH {Mo	91.74
d1pg7x1	120	Immunoglobulin heavy chain variable domain, VH {Mo	91.73
d7fabh1	116	Immunoglobulin heavy chain variable domain, VH {Hu	91.67
d2ck0h1	109	Immunoglobulin heavy chain variable domain, VH {Mo	91.66
d1mfah1	117	Immunoglobulin heavy chain variable domain, VH {Mo	91.51
d1a2yb_	116	Immunoglobulin heavy chain variable domain, VH {Mo	91.43
d1j05b_	121	Immunoglobulin heavy chain variable domain, VH {Mo	91.42
d1sy6a1	81	CD3 gamma chain ectodomain fragment {Human (Homo s	91.4
d1tjgh1	132	Immunoglobulin heavy chain variable domain, VH {En	91.16
d1c5db1	117	Immunoglobulin heavy chain variable domain, VH {Ra	91.03
d1zvya1	124	Camelid IG heavy chain variable domain, VHh {Camel	91.0
d1fo0b_	112	T-cell antigen receptor {Mouse (Mus musculus), bet	90.99
d1rihh1	125	Immunoglobulin heavy chain variable domain, VH {Mo	90.98
d1ol0a_	121	Immunoglobulin heavy chain variable domain, VH {En	90.95
d1jnhb1	117	Immunoglobulin heavy chain variable domain, VH {Mo	90.85
d1bz7b1	122	Immunoglobulin heavy chain variable domain, VH {Mo	90.76
d1jbja2	100	CD3 epsilon chain ectodomain fragment {Mouse (Mus	90.76
d1r0ah1	123	Immunoglobulin heavy chain variable domain, VH {Mo	90.72
d1mqkh_	123	Immunoglobulin heavy chain variable domain, VH {Mo	90.69
d1dfbh1	126	Immunoglobulin heavy chain variable domain, VH {Hu	90.68
d1ct8b1	118	Immunoglobulin heavy chain variable domain, VH {Mo	90.65
d2jelh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	90.61
d1dlfh_	120	Immunoglobulin heavy chain variable domain, VH {Mo	90.48
d1q9rb1	122	Immunoglobulin heavy chain variable domain, VH {Mo	90.46
d1d5mb1	98	Class II MHC beta chain, C-terminal domain {Human	90.43
d2p49b1	121	Camelid IG heavy chain variable domain, VHh {Camel	90.41
d1vgeh1	122	Immunoglobulin heavy chain variable domain, VH {Hu	90.34
d1rjca1	126	Camelid IG heavy chain variable domain, VHh {Camel	90.32
d1mjuh1	116	Immunoglobulin heavy chain variable domain, VH {Mo	90.23
d1b2wh1	117	Immunoglobulin heavy chain variable domain, VH {En	90.15
d1indh1	114	Immunoglobulin heavy chain variable domain, VH {Mo	90.14
d1ieha_	135	Camelid IG heavy chain variable domain, VHh {Llama	90.11
d2nxyd1	128	Immunoglobulin heavy chain variable domain, VH {Hu	90.11
d3cx5j1	127	Immunoglobulin heavy chain variable domain, VH {Mo	90.0
d2fx7h1	127	Immunoglobulin heavy chain variable domain, VH {Hu	89.98
d1fn4b1	116	Immunoglobulin heavy chain variable domain, VH {Ra	89.94
d1nfdf1	121	Immunoglobulin heavy chain variable domain, VH {Ha	89.89
d1ncwh1	119	Immunoglobulin heavy chain variable domain, VH {Mo	89.78
d2fb4h1	127	Immunoglobulin heavy chain variable domain, VH {Hu	89.69
d1um5h1	117	Immunoglobulin heavy chain variable domain, VH {Mo	89.68
d1ad9b1	120	Immunoglobulin heavy chain variable domain, VH {En	89.66
d1de4a1	94	Hemochromatosis protein Hfe, alpha-3 domain {Human	89.64
d1muja1	100	Class II MHC alpha chain, C-terminal domain {Mouse	89.58
d1uvqa1	99	Class II MHC alpha chain, C-terminal domain {Human	89.56
d3c2ah1	131	Immunoglobulin heavy chain variable domain, VH {Hu	89.47
d1rhhb1	130	Immunoglobulin heavy chain variable domain, VH {Hu	89.47
d1op3h1	125	Immunoglobulin heavy chain variable domain, VH {En	89.47
d1n0xh1	127	Immunoglobulin heavy chain variable domain, VH {Hu	89.2
d1lmka1	126	Immunoglobulin heavy chain variable domain, VH {Mo	88.85
d1rzga1	130	Immunoglobulin heavy chain variable domain, VH {Hu	88.84
d1lo4h1	118	Immunoglobulin heavy chain variable domain, VH {Mo	88.34
d1yedb1	124	Immunoglobulin heavy chain variable domain, VH {Mo	87.72
d1rzfh1	133	Immunoglobulin heavy chain variable domain, VH {Hu	87.68
d1xiwb_	74	CD3 delta chain ectodomain fragment {Human (Homo s	87.56
d1hdma1	103	Class II MHC alpha chain, C-terminal domain {Human	87.14
d1fnga1	101	Class II MHC alpha chain, C-terminal domain {Mouse	86.22
d1hdmb1	98	Class II MHC beta chain, C-terminal domain {Human	86.02
d1t7va1	94	Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Hu	84.51
d3frua1	91	Fc (IgG) receptor, alpha-3 domain {Rat (Rattus nor	84.32
d1uvqb1	97	Class II MHC beta chain, C-terminal domain {Human	83.75
d1hxmb2	107	T-cell antigen receptor {Human (Homo sapiens), del	80.73

>d1l6za2 b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.66  E-value=6.1e-17  Score=91.11  Aligned_cols=59  Identities=24%  Similarity=0.219  Sum_probs=53.5

Q ss_pred             cccCeEcCcCccceEEecCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeCC
Q psy7035           2 SFSNVQLYNNISAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGL   60 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~p   60 (70)
                      ++||++|....+..+...+++|.|.+++++|+|.|+|.|.|..|...|.++.|+|+|+|
T Consensus        37 ~~~~~~l~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~S~~~~L~V~~~P   95 (96)
T d1l6za2          37 LFNSQSLQLTERMTLSQNNSILRIDPIKREDAGEYQCEISNPVSVRRSNSIKLDIIFDP   95 (96)
T ss_dssp             EETTEECCCCTTEEEETTTTEEEECSCCGGGCEEEEEEEESSSCCEECCCCEEEECCSC
T ss_pred             EEeeeecccccceeccCCceEEEEeccchhhceEEEEEEEeCCCCeEEEeEEEEEEcCC
Confidence            68999998777666666788999999999999999999999999999999999999887

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=9.5e-15  Score=82.65  Aligned_cols=64  Identities=19%  Similarity=0.128  Sum_probs=50.7

Q ss_pred             cccCeEcCcCccceEEecC--CEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeCCCCCCCCccc
Q psy7035           2 SFSNVQLYNNISAGVIVSN--QSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGLGIPAEPLFR   69 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~~~~--~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~p~~~~~p~~~   69 (70)
                      +|||++|..+++..+....  .+|.|.+++++|+|.|+|.|+|..|+..+ .+.|.|.   +.|.+|.|.
T Consensus        35 ~k~~~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~-~~~l~V~---~~P~pP~g~  100 (101)
T d2cqva1          35 MKFRKQIQESEHMKVENSENGSKLTILAARQEHCGCYTLLVENKLGSRQA-QVNLTVV---DKPDPPAGT  100 (101)
T ss_dssp             EESSSBCCCSSSEEEEECSSEEEEEETTCCTTTCEEEEEEEECSSCEEEC-CEEEEEE---CSCSCCCCC
T ss_pred             EeCceeeccCCcEEEEEecceeEEEEeeCCcccCEEEEEEEEECCCEEEE-EEEEEEE---ecCCCcCCC
Confidence            5889998776655544332  27999999999999999999999998644 7899999   566677664

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=8.2e-14  Score=77.04  Aligned_cols=56  Identities=23%  Similarity=0.201  Sum_probs=46.8

Q ss_pred             cccCeEcCcCccceEEecC----CEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEE
Q psy7035           2 SFSNVQLYNNISAGVIVSN----QSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYD   57 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~~~~----~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~   57 (70)
                      +|||+++...++..+...+    .+|+|.+++++|+|.|+|.|+|..|...|.++.|.|.
T Consensus        31 ~k~g~~l~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~S~~~~l~V~   90 (91)
T d1rhfa1          31 VKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDGGETEISQPVWLTVE   90 (91)
T ss_dssp             EETTEECCSSEEEEEEEETTEEEEEEEESSCCGGGCEEEEEEESSCTTCEECCCEEEEEE
T ss_pred             EEeecccccceeeeeeecccCceeeEEECCCCcccCEEEEEEEEECCCCEEEEEEEEEEE
Confidence            6889998766555444433    3799999999999999999999999988989999986

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.42  E-value=1.2e-13  Score=76.82  Aligned_cols=55  Identities=16%  Similarity=0.172  Sum_probs=45.1

Q ss_pred             cccCeEcCcCccce-EEecCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEE
Q psy7035           2 SFSNVQLYNNISAG-VIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAY   56 (70)
Q Consensus         2 ~~ng~~l~~~~~~~-~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V   56 (70)
                      ++||++|..+.... ....+++|.|.+++.+|+|.|+|.|+|..|...|..+.|..
T Consensus        38 ~~~g~~l~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~s~~v~l~~   93 (94)
T d1biha1          38 KKDGKSYNWQEHNAALRKDEGSLVFLRPQASDEGHYQCFAETPAGVASSRVISFRK   93 (94)
T ss_dssp             EESSSBCCTTTTTEEECTTSCCEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             EeeeeeeeeecceeeecccceEEEEeccChhcCeEEEEEEEeCCCEEEEEEEEEEE
Confidence            57899887554443 33467899999999999999999999999988888877764

>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=2.2e-13  Score=75.97  Aligned_cols=53  Identities=17%  Similarity=0.143  Sum_probs=45.1

Q ss_pred             cccCeEcCcCccceEEecCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeCC
Q psy7035           2 SFSNVQLYNNISAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGL   60 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~p   60 (70)
                      ||||+.+....      .+++|.|.+++.+|+|.|+|.|.|..|...|.++.|+|++.|
T Consensus        36 ~k~g~~~~~~~------~~~~l~i~~~~~~dsG~Y~C~a~n~~~~~~S~~v~i~V~~~P   88 (89)
T d1f2qa2          36 YKDGEALKYWY------ENHNISITNATVEDSGTYYCTGKVWQLDYESEPLNITVIKAP   88 (89)
T ss_dssp             EETTEECCSCC------CSSEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEECSC
T ss_pred             EEeeecccccc------ccceEEEeeeeeecCcEEEEEEEeCCCCeEeeeEEEEEEeCC
Confidence            57777765322      356899999999999999999999999988999999999776

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.40  E-value=3.3e-13  Score=75.73  Aligned_cols=56  Identities=21%  Similarity=0.275  Sum_probs=45.7

Q ss_pred             cccCeEcCcCccceEE----ecCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEE
Q psy7035           2 SFSNVQLYNNISAGVI----VSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYD   57 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~----~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~   57 (70)
                      +|||+++..+....+.    ..+.+|.|.+++++|+|.|+|.|.|..|...+.++.|+|.
T Consensus        38 ~k~g~~i~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~s~~L~Vl   97 (97)
T d1biha3          38 FKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVV   97 (97)
T ss_dssp             EETTEECCCCTTSSEESCSSSTTSEEEESSCCGGGCEEEEEEECCSSSSCEEEEEEEEEE
T ss_pred             EEeeeeccccceeeeeeeeecCCCEEEEEeccccccEEEEEEEEECCCcEEEEEEEEEEC
Confidence            5889988765443333    2446899999999999999999999999988888999884

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.39  E-value=4.1e-13  Score=74.62  Aligned_cols=53  Identities=19%  Similarity=0.253  Sum_probs=45.2

Q ss_pred             cccCeEcCcCccceEEecCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEE
Q psy7035           2 SFSNVQLYNNISAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYD   57 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~   57 (70)
                      +|||++|..+.+  +.+.+++|.|.+++.+|+|.|+|.|+|..|+..+ .+.|.|+
T Consensus        36 ~k~g~~i~~~~~--~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~-~~~l~V~   88 (89)
T d1cs6a4          36 LRDGQPLASQNR--IEVSGGELRFSKLVLEDSGMYQCVAENKHGTVYA-SAELTVQ   88 (89)
T ss_dssp             EETTEECCCCSS--EEEETTEEEESSCCGGGCEEEEEEEEETTEEEEE-EEEEEEE
T ss_pred             EEeeccccccce--eeeeeeeEEEEeecccCCEEEEEEEEeCCCEEEE-EEEEEEE
Confidence            579999976654  3457889999999999999999999999998755 6889986

>d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=99.38  E-value=1.6e-13  Score=76.35  Aligned_cols=40  Identities=18%  Similarity=0.338  Sum_probs=36.9

Q ss_pred             cCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEe
Q psy7035          19 SNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDI   58 (70)
Q Consensus        19 ~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~   58 (70)
                      .+++|+|.+++++|+|.|+|.|.|..|...|.++.|.|++
T Consensus        47 ~~~~l~i~~v~~~dsG~Y~C~a~n~~g~~~S~~v~l~V~~   86 (88)
T d2fcba2          47 SDPNFSIPQANHSHSGDYHCTGNIGYTLYSSKPVTITVQA   86 (88)
T ss_dssp             SCCEEEETTCCGGGCEEEEEEEEETTEEEECCCEEEEECC
T ss_pred             cccccccCccCHHHCCeEEEEEEeCCCCEEeeeEEEEEeC
Confidence            4678999999999999999999999998889999999974

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.36  E-value=7.6e-13  Score=74.11  Aligned_cols=55  Identities=13%  Similarity=0.053  Sum_probs=44.8

Q ss_pred             cccCeEcCcCccceEEe-cCC--EEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEE
Q psy7035           2 SFSNVQLYNNISAGVIV-SNQ--SLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYD   57 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~~-~~~--tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~   57 (70)
                      +|||.+|..+.+..... .++  +|+|.+++.+|+|.|+|.|+|..|...+ .+.|.|.
T Consensus        39 ~k~~~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~-~~~L~V~   96 (98)
T d1g1ca_          39 YKNGVKIERSDRIYWYWPEDNVCELVIRDVTGEDSASIMVKAINIAGETSS-HAFLLVQ   96 (98)
T ss_dssp             EETTEECCCCSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEEEEE-EEEEEEE
T ss_pred             EeCceEEeeeeeeEEEeccceEEEEEeccCccccCEEEEEEEEECCcEEEE-EEEEEEE
Confidence            68999998766555443 333  7999999999999999999999998644 6889886

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=6.3e-13  Score=76.02  Aligned_cols=59  Identities=19%  Similarity=0.117  Sum_probs=46.3

Q ss_pred             cccCeEcCcCccceEEecC---------CEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeCCC
Q psy7035           2 SFSNVQLYNNISAGVIVSN---------QSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGLG   61 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~~~~---------~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~p~   61 (70)
                      +|||++|..+.+......+         .+|+|.+++++|+|.|+|.|+|..|.. +..+.|.|...|.
T Consensus        35 ~~ng~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~A~N~~G~~-~~~i~v~v~~~P~  102 (107)
T d1he7a_          35 LFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQA-SASIMAAFMDNPF  102 (107)
T ss_dssp             EETTEECCCCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEEEEEETTEEE-EEEEEECCCSCTT
T ss_pred             EEeeeEccCccceeeeeeeeeeeeeccceEEEECcccHHHCcEEEEEEEeCCCEE-EEEEEEEEEcCCC
Confidence            6899999765544433221         359999999999999999999999986 5578898887663

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

Probab=99.35  E-value=1.3e-12  Score=73.59  Aligned_cols=55  Identities=15%  Similarity=0.192  Sum_probs=45.0

Q ss_pred             cccCeEcCcCccceEEec-C--CEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEE
Q psy7035           2 SFSNVQLYNNISAGVIVS-N--QSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYD   57 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~~~-~--~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~   57 (70)
                      +|||.+|..+.+..+... +  .+|.|.+++++|+|.|+|.|+|..|...+ .+.|.|+
T Consensus        43 ~k~~~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~-~~~L~V~  100 (102)
T d1fhga_          43 FKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEATC-TAELLVE  100 (102)
T ss_dssp             EETTEECCCSSSEEEEECTTCEEEEEESSCCGGGCEEEEEEEEETTEEEEE-EEEEEEE
T ss_pred             EeeeccccceeeEeEEEecCceeeeEecCCCHHhCEEEEEEEEECCcEEEE-EEEEEEE
Confidence            689999987766555443 2  37999999999999999999999998654 6888886

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=6.1e-13  Score=75.44  Aligned_cols=59  Identities=14%  Similarity=0.111  Sum_probs=45.0

Q ss_pred             cccCeEcCcCccceEEe--c----CCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeCCC
Q psy7035           2 SFSNVQLYNNISAGVIV--S----NQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGLG   61 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~~--~----~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~p~   61 (70)
                      +|||++|..+.+.....  .    ..+|.|.+++++|+|.|+|.|+|..|.. +..+.|.|...|.
T Consensus        37 ~~n~~~i~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~-~~~~~v~V~~~P~  101 (105)
T d1wwca_          37 LHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTA-NQTINGHFLKEPF  101 (105)
T ss_dssp             EETTEECCCSSSEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEEETTEEE-EEEEEECCSCCCC
T ss_pred             EeCccccCCCcceeeeEEeecccceEEEEEeecccccceEEEEEEEcCCCEE-EEEEEEEEEeCCC
Confidence            58899987654433221  1    2469999999999999999999999976 5578999985554

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.33  E-value=5.2e-13  Score=74.69  Aligned_cols=57  Identities=14%  Similarity=0.118  Sum_probs=45.4

Q ss_pred             cccCeEcCcCccceEEecCC--EEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeC
Q psy7035           2 SFSNVQLYNNISAGVIVSNQ--SLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIG   59 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~~~~~--tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~   59 (70)
                      +|||++|..+.+..+...++  +|.|.+++.+|+|.|+|.|+|..|... ..+.|.|...
T Consensus        36 ~~~~~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~-~~~~l~V~~~   94 (97)
T d1koaa1          36 HKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSYGTKE-EIVFLNVTRH   94 (97)
T ss_dssp             EETTEECCSBTTBBCCCSTTEEEEEESCCCSGGGSCEEEEEEETTEEEE-EEECCEEECS
T ss_pred             EEeeeccceeeEEEEEecCCeeEEEeCCCceecCEEEEEEEEECCCEEE-EEEEEEEeec
Confidence            58899987765554443333  699999999999999999999999864 4788999743

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=9.1e-13  Score=74.88  Aligned_cols=60  Identities=18%  Similarity=0.225  Sum_probs=46.6

Q ss_pred             cccCeEcCcCccceEEe---c----CCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeCCCC
Q psy7035           2 SFSNVQLYNNISAGVIV---S----NQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGLGI   62 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~~---~----~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~p~~   62 (70)
                      +|||++|..+....+..   .    ..+|+|.+++++|+|.|+|.|+|..|+. +..+.|.|...|++
T Consensus        36 ~~~g~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~-~~~~~v~V~~~P~i  102 (103)
T d1wwbx_          36 FYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKD-EKQISAHFMGWPGI  102 (103)
T ss_dssp             EETTEEECCCSSEEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEECSSCEE-EEEEEECCSCCCCC
T ss_pred             EECCEEeeeeeeeeeeecccccccceEEEEECCCCHHhCceEEEEEeccCCEE-EEEEEEEEEeCCCC
Confidence            57899987655444332   1    2479999999999999999999999987 66789998866653

>d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Semaphorin 4d Ig-like domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=7.9e-13  Score=74.18  Aligned_cols=47  Identities=19%  Similarity=0.335  Sum_probs=40.2

Q ss_pred             cccCeEcCcCccceEEecCCEEEEcccCCCCCeeeEEEeEeCCCccc
Q psy7035           2 SFSNVQLYNNISAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQ   48 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~   48 (70)
                      ++||+++..+..+..+..+++|+|.+++++|+|.|+|.|.|..|...
T Consensus        31 ~~~g~~l~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~A~n~~g~~~   77 (92)
T d1olza1          31 KFQNGVLKAESPKYGLMGRKNLLIFNLSEGDSGVYQCLSEERVKNKT   77 (92)
T ss_dssp             EESSSBCCCCSSSBCCTTTTCEEECSCCGGGCEEEEEEEEEECSSSE
T ss_pred             ecCcccceeeeeeeecceeeEEEECCCCHHHCcEEEEEEEEcCCCEE
Confidence            57888887666666667889999999999999999999999988643

>d1fnla2 b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=99.31  E-value=6.8e-13  Score=73.96  Aligned_cols=51  Identities=14%  Similarity=0.169  Sum_probs=42.0

Q ss_pred             cccCeEcCcCccceEEecCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEe
Q psy7035           2 SFSNVQLYNNISAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDI   58 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~   58 (70)
                      ||||+++..      ...++.|.|.+++++|+|.|+|.|.|..|...|.++.|+|+.
T Consensus        38 ~kng~~~~~------~~~~~~l~I~~v~~~dsG~Y~C~a~n~~~~~~S~~v~itV~E   88 (89)
T d1fnla2          38 LQNGKDRKY------FHHNSDFHIPKATLKDSGSYFCRGLVGSKNVSSETVNITITQ   88 (89)
T ss_dssp             EETTEEEEE------EEECCCEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC
T ss_pred             EEcccccce------eccccccEECccceeccceEEEEEEeCCCCeEEeeEEEEEEe
Confidence            456655432      235678999999999999999999999998889999999984

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.31  E-value=2.8e-12  Score=71.01  Aligned_cols=51  Identities=24%  Similarity=0.356  Sum_probs=41.0

Q ss_pred             cccCeEcCcCccceEEecCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEE
Q psy7035           2 SFSNVQLYNNISAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAY   56 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V   56 (70)
                      +|||++|..+ +  ..+.+++|+|.+++++|+|.|+|.|+|..|.. +..+.|.|
T Consensus        38 ~~~~~~i~~~-~--~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~-~~~~~l~V   88 (89)
T d1biha4          38 SHNAKPLSGG-R--ATVTDSGLVIKGVKNGDKGYYGCRATNEHGDK-YFETLVQV   88 (89)
T ss_dssp             EETTEECCSS-S--EEEETTEEEESSCCSTTCEEEEEEEEETTEEE-EEEEEEEE
T ss_pred             EeCCccCccc-c--EEEeeeeEEECCCChhhCEEEEEEEEECCCEE-EEEEEEEE
Confidence            5788888543 2  23457789999999999999999999999976 44677776

>d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.29  E-value=3.3e-12  Score=71.30  Aligned_cols=54  Identities=20%  Similarity=0.293  Sum_probs=41.3

Q ss_pred             cCeEcCcCccc-eEEe---cCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEE
Q psy7035           4 SNVQLYNNISA-GVIV---SNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYD   57 (70)
Q Consensus         4 ng~~l~~~~~~-~~~~---~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~   57 (70)
                      ||+.+..+..+ .+..   ...+|.|.+++++|+|.|+|.|+|..|...+.++.|+|+
T Consensus        39 ~g~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~tv~l~V~   96 (97)
T d1epfa1          39 NGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIF   96 (97)
T ss_dssp             TSCEECCBSSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTTEEEEEEEEEEEE
T ss_pred             eeeeeeeccccEEEEeecCcceEEEcccCchhhceEEEEEEEeCCCcEEEEEEEEEEE
Confidence            56666543332 2221   235799999999999999999999999877778999886

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

Probab=99.29  E-value=2.5e-12  Score=72.03  Aligned_cols=55  Identities=22%  Similarity=0.266  Sum_probs=43.4

Q ss_pred             cccCeEcCcCccce---EEecCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEE
Q psy7035           2 SFSNVQLYNNISAG---VIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYD   57 (70)
Q Consensus         2 ~~ng~~l~~~~~~~---~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~   57 (70)
                      +|||++|..+.+..   .....++|.|.+++++|+|.|+|.|+|..|.. +..+.|.|.
T Consensus        40 ~kng~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~-~~~~~l~Vl   97 (97)
T d3dara1          40 LKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSI-NHTYHLDVV   97 (97)
T ss_dssp             EETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEEE-EEEEEEEEC
T ss_pred             EECCEeccccCceeeEEEcCCcEEEEECCCCcccCEEEEEEEEECCCEE-EEEEEEEEC
Confidence            58999997554322   22355799999999999999999999999985 557888873

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.29  E-value=1.1e-12  Score=73.34  Aligned_cols=54  Identities=20%  Similarity=0.332  Sum_probs=43.3

Q ss_pred             cccCeEcCcCccceE-EecCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEE
Q psy7035           2 SFSNVQLYNNISAGV-IVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTA   55 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~-~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~   55 (70)
                      +|||.+|........ ...+..|.|..++.+|+|.|+|.|+|..|...|.+++|.
T Consensus        42 ~~ng~~i~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~N~~G~~~S~~a~L~   96 (97)
T d1cs6a1          42 KMNGTELKMGPDSRYRLVAGDLVISNPVKAKDAGSYQCVATNARGTVVSREASLR   96 (97)
T ss_dssp             EETTEECCCSTTSSEEEETTEEEEESCCHHHHCEEEEEEEEETTEEEECCCEEEE
T ss_pred             EEeeeeccCCCCceEEeeeeeEEEEecccccCCEEEEEEEEECCCEEEEEEEEEe
Confidence            689999865444333 345567888889999999999999999999888888875

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.27  E-value=2.7e-12  Score=71.16  Aligned_cols=55  Identities=15%  Similarity=0.128  Sum_probs=43.2

Q ss_pred             cccCeEcCcCccceEEec--CCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEE
Q psy7035           2 SFSNVQLYNNISAGVIVS--NQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYD   57 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~~~--~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~   57 (70)
                      ++||.++..+.+..+...  +.+|.|.+++++|+|.|+|.|+|..|+.. ..+.|.|+
T Consensus        37 ~~~~~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~-~~~~l~V~   93 (93)
T d1wiua_          37 TVGDSGAALAPELLVDAKSSTTSIFFPSAKRADSGNYKLKVKNELGEDE-AIFEVIVQ   93 (93)
T ss_dssp             ECSSSSCBCSTTSEEEEETTEEEEECTTBCGGGCEEEEEEEEETTEEEE-EEEEEEEC
T ss_pred             EeeeeeceeeeeeeecccccceeeccccccccccEEEEEEEEECCCEEE-EEEEEEEC
Confidence            578888876665554443  34899999999999999999999999864 46788773

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.27  E-value=3.2e-12  Score=70.72  Aligned_cols=55  Identities=16%  Similarity=0.215  Sum_probs=44.0

Q ss_pred             cccCeEcCcCccceEEe--cCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEE
Q psy7035           2 SFSNVQLYNNISAGVIV--SNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYD   57 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~~--~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~   57 (70)
                      ++||++|..+.+..+..  .+++|.|.+++.+|+|.|+|.|+|..|+... .+.|.|+
T Consensus        34 ~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~-~~~l~V~   90 (91)
T d1tnna_          34 LRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSVVVENSEGKQEA-EFTLTIQ   90 (91)
T ss_dssp             ESSSSTTCSSSSCEEEECSSEEEEECSSCCSCCCEEEEEECBCSSCBCCE-EEEEECC
T ss_pred             EEeecccccccceeeeeecceeEEeecCCCHHHCEEEEEEEEECCCEEEE-EEEEEEE
Confidence            57888887665544443  4568999999999999999999999998644 6788875

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.26  E-value=4.2e-12  Score=69.55  Aligned_cols=52  Identities=21%  Similarity=0.212  Sum_probs=40.4

Q ss_pred             cccCeEcCcCccceEEecCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEE
Q psy7035           2 SFSNVQLYNNISAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYD   57 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~   57 (70)
                      +|||..+....   ....+++|+|.+++.+|+|.|+|.|+|..|.. +..++|.|+
T Consensus        38 ~k~~~~~~~~~---~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~-~~~~~l~V~   89 (89)
T d1gl4b_          38 TRLHNGKLPSR---AMDFNGILTIRNVQPSDAGTYVCTGSNMFAMD-QGTATLHVQ   89 (89)
T ss_dssp             EEGGGBCCCTT---EEEETTEEEECSCCGGGCEEEEEEEECSSCEE-EEEEEEEEC
T ss_pred             ecCCceeeccc---cEeeceEEEEecCCcccCEEEEEEEEECCCEE-EEEEEEEEC
Confidence            35666554432   34568899999999999999999999999976 457888874

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=5.3e-12  Score=72.37  Aligned_cols=55  Identities=18%  Similarity=0.094  Sum_probs=42.4

Q ss_pred             cccCeEcCcCccceEEecCCEEEEcccCCCCCeeeEEEeEeCCCccc---ceeEEEEEE
Q psy7035           2 SFSNVQLYNNISAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQ---SNAQKTAYD   57 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~---s~~~~L~V~   57 (70)
                      +|||++|..+.. .....+++|.|.+++.+|+|.|+|.|+|..|...   +..+.|.|.
T Consensus        40 ~kdg~~l~~~~~-~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~g~~~~vt~~i~~~v~   97 (103)
T d1iray2          40 YKDCKPLLLDNI-HFSGVKDRLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFITL   97 (103)
T ss_dssp             EETTEECCCCSS-SEEEETTEEEESSCCGGGCEEEEEEEEEEETTEEEEEEEEEEEEEE
T ss_pred             EECCccccCCCc-EEEecCCEEEEcccccccCcEEEEEEEECcCCEEEEEEEEEEEEEC
Confidence            689999976543 4566788999999999999999999999876432   344555554

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.24  E-value=6.8e-12  Score=70.21  Aligned_cols=55  Identities=16%  Similarity=0.274  Sum_probs=42.1

Q ss_pred             cccCeEcCcCcc--ceEE--ecCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEE
Q psy7035           2 SFSNVQLYNNIS--AGVI--VSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYD   57 (70)
Q Consensus         2 ~~ng~~l~~~~~--~~~~--~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~   57 (70)
                      ++||+++.....  ....  ..+++|.|.+++++|+|.|+|.|+|..|.. +..+.|.|.
T Consensus        40 ~~~g~~i~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~-~~~~~l~V~   98 (100)
T d1qz1a3          40 TKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQ-DASIHLKVF   98 (100)
T ss_dssp             EETTEECCCC--CCSSEEECTTSCEEEECSCCGGGCEEEEEEEEETTEEE-EEEEEEEEE
T ss_pred             EeCCcccccccccceeEEeecCceEEEeCCCCcccCEEEEEEEEECCCEE-EEEEEEEEE
Confidence            578888864322  2222  345789999999999999999999999986 447899987

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=4e-12  Score=70.76  Aligned_cols=37  Identities=27%  Similarity=0.407  Sum_probs=34.5

Q ss_pred             CEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEE
Q psy7035          21 QSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYD   57 (70)
Q Consensus        21 ~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~   57 (70)
                      ++|.|.+++++|+|.|+|.|+|..|...|..+.|.|+
T Consensus        60 ~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~~a~L~Vk   96 (96)
T d2c9aa1          60 ASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVVK   96 (96)
T ss_dssp             EEEEECSCCGGGCSEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             eEEEECCCCHHHCeEEEEEEEeCCCeEEEEEEEEEEC
Confidence            5799999999999999999999999998988999884

>d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.21  E-value=4.4e-12  Score=72.07  Aligned_cols=56  Identities=9%  Similarity=0.127  Sum_probs=41.0

Q ss_pred             cccCeEcC--cCccceEEecCCEEEEcccCCCCCeeeEEEeEeCCCcccc----eeEEEEEE
Q psy7035           2 SFSNVQLY--NNISAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQS----NAQKTAYD   57 (70)
Q Consensus         2 ~~ng~~l~--~~~~~~~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s----~~~~L~V~   57 (70)
                      +|||.++.  .+.++.....+++|.|.+++++|+|.|+|.|+|..|....    +.++|.|.
T Consensus        40 ~k~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~v~~~~~~l~v~  101 (105)
T d1cs6a2          40 LLNEFPNFIPADGRRFVSQTTGNLYIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLA  101 (105)
T ss_dssp             EESSTTCBCCCCSSEEECTTTCCEEESSCCGGGCEEEEEEEEEEETTEEEEEECCCEEEEEE
T ss_pred             EEeeccccccccceeeeecCCCEEeecccccccCcEEEEEEEECCCCEEEEEEeccEEEEEc
Confidence            46777664  2344445557889999999999999999999999886543    33455554

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=2.4e-11  Score=68.94  Aligned_cols=55  Identities=13%  Similarity=0.115  Sum_probs=43.0

Q ss_pred             cccCeEcC--cCccceEEecCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEE
Q psy7035           2 SFSNVQLY--NNISAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYD   57 (70)
Q Consensus         2 ~~ng~~l~--~~~~~~~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~   57 (70)
                      +|+|.++.  ......+...+++|+|.+++.+|+|.|+|.|.|..|.... .+.|.|.
T Consensus        38 ~k~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~-~~~L~V~   94 (101)
T d1iray1          38 YKDDSKTPVSTEQASRIHQHKEKLWFVPAKVEDSGHYYCVVRNSSYCLRI-KISAKFV   94 (101)
T ss_dssp             ECSSTTSBCCCCTTSSEEEETTEEEETTCCGGGCEEEEEEEEETTEEEEE-EEEEEEE
T ss_pred             EECCcccccccccceEEeccCCEEEeccceecCCEEEEEEEECCCCeEEE-EEEEEEE
Confidence            45665543  2233345567889999999999999999999999998654 6899997

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.18  E-value=1.6e-11  Score=68.18  Aligned_cols=54  Identities=15%  Similarity=0.236  Sum_probs=40.0

Q ss_pred             cccCeEcCcCcc-ceEEecCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEE
Q psy7035           2 SFSNVQLYNNIS-AGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAY   56 (70)
Q Consensus         2 ~~ng~~l~~~~~-~~~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V   56 (70)
                      +|||+++....+ ......+++|.|.+++++|+|.|+|.|+|..|.. .....|.|
T Consensus        36 ~~~~~~i~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~~~~-~~~~~i~V   90 (92)
T d1epfa2          36 KHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILARGE-INFKDIQV   90 (92)
T ss_dssp             EETTEEGGGGCCTTEEECTTSCEEETTCCGGGCEEEEEEEEEGGGTE-EEEEEEEE
T ss_pred             EEcCcccccccceeeeeeeeeeEEECCCCHHhCEEEEEEEEECcCCE-EEEEEEEE
Confidence            578888865433 3455677899999999999999999999976543 23344554

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.18  E-value=1.5e-11  Score=69.50  Aligned_cols=39  Identities=26%  Similarity=0.426  Sum_probs=34.2

Q ss_pred             cCCEEEEcccCCCCCeeeEEEeEeCCCccc-ceeEEEEEE
Q psy7035          19 SNQSLVLQNVSRARAGHYTCVGSNGEGDGQ-SNAQKTAYD   57 (70)
Q Consensus        19 ~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~-s~~~~L~V~   57 (70)
                      ..++|.|.+++++|+|.|+|.|+|..|... |..++|+|.
T Consensus        65 ~~~~l~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~v~l~V~  104 (110)
T d1f97a2          65 KSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMDAV  104 (110)
T ss_dssp             TTCCEEESSCCGGGCEEEEEEEECSSSCCEECCCEEEEEE
T ss_pred             cccceEECCCCccCCEEEEEEEEECCCcEEEEEEEEEEEE
Confidence            455899999999999999999999999765 557899987

>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Tyrosine-protein kinase receptor tyro3, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=1.4e-11  Score=68.05  Aligned_cols=49  Identities=12%  Similarity=0.135  Sum_probs=38.7

Q ss_pred             cccCeEcCcCccceEEecCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEE
Q psy7035           2 SFSNVQLYNNISAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYD   57 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~   57 (70)
                      +|||++|....       .+.++|.....+|+|.|+|.|+|..|...|.+++|+|+
T Consensus        37 ~k~g~~i~~~~-------~~~~~l~~~~~~d~G~Y~C~A~N~~G~~~S~~~~v~Vk   85 (85)
T d1rhfa2          37 WRGTTKIGGPA-------PSPSVLNVTGVTQSTMFSCEAHNLKGLASSRTATVHLQ   85 (85)
T ss_dssp             EETTEECSCSE-------ESSEEEEECCCSSCEEEEEEEEETTEEEECCCEEEEEC
T ss_pred             EECCEECCCCC-------CcceEEecCCccccEEEEEEEEcCCCcEEEEEEEEEEC
Confidence            57888776442       13456666677899999999999999999999999884

>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.16  E-value=2.9e-11  Score=68.26  Aligned_cols=45  Identities=22%  Similarity=0.261  Sum_probs=38.7

Q ss_pred             cceEEecCCEEEEcccCCCCCeeeEEEeEeCCCccc-ceeEEEEEE
Q psy7035          13 SAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQ-SNAQKTAYD   57 (70)
Q Consensus        13 ~~~~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~-s~~~~L~V~   57 (70)
                      ++..+..+++|+|.+++.+|+|.|+|.+.|..|... +..+.|.|+
T Consensus        52 ~~~~~~~ngSL~I~nl~~~DsG~Y~c~v~~~~g~~~~~~~~~L~V~   97 (98)
T d1hnga1          52 GAFEILANGDLKIKNLTRDDSGTYNVTVYSTNGTRILNKALDLRIL   97 (98)
T ss_dssp             TTEEECTTSCEEESSCCGGGCEEEEEEEEETTCCEEEEEEEEEEEE
T ss_pred             CeEEECCCccEEEeCCCHHHCEEEEEEEEeCCCCEEEEEEEEEEEE
Confidence            455667889999999999999999999999999754 567889886

>d1vcaa2 b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=1.8e-11  Score=67.53  Aligned_cols=39  Identities=13%  Similarity=0.164  Sum_probs=34.1

Q ss_pred             ecCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEE
Q psy7035          18 VSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYD   57 (70)
Q Consensus        18 ~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~   57 (70)
                      ...++|.|.+++++|+|.|+|.|.|..|.. +..+.|+|+
T Consensus        51 ~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~-~~~~~v~V~   89 (90)
T d1vcaa2          51 GTTSTLTMNPVSFGNEHSYLCTATCESRKL-EKGIQVEIY   89 (90)
T ss_dssp             TTEEEEEESSCCGGGCSEEEEEEEETTEEE-EEEEEEEEE
T ss_pred             cCCcEEEEecccccccceEEEEEEeCCCEE-EEEEEEEEE
Confidence            355689999999999999999999999974 667888886

>d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Mucosal addressin cell adhesion molecule-1 (MADCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=2.8e-11  Score=67.39  Aligned_cols=38  Identities=26%  Similarity=0.337  Sum_probs=33.2

Q ss_pred             cCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEE
Q psy7035          19 SNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYD   57 (70)
Q Consensus        19 ~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~   57 (70)
                      .+++|+|.+++++|+|.|+|.|+|..|. .+..+.|.|+
T Consensus        53 ~~~~L~i~~v~~~D~G~Y~C~Asn~~g~-~~~s~~l~Vy   90 (90)
T d1gsma1          53 GRSVLTVRNASLSAAGTRVCVGSCGGRT-FQHTVQLLVY   90 (90)
T ss_dssp             SEEEEEECSCCGGGCEEEEEEEEETTEE-EEEEEEEEEE
T ss_pred             ceeeEEcCccChhhCCcEEEEEEeCCCc-EEEEEEEEEC
Confidence            4568999999999999999999999886 5667888885

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.12  E-value=3.5e-11  Score=66.50  Aligned_cols=39  Identities=26%  Similarity=0.365  Sum_probs=34.6

Q ss_pred             ecCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEE
Q psy7035          18 VSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYD   57 (70)
Q Consensus        18 ~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~   57 (70)
                      ..+++|.|.+++++|+|.|+|.|+|..|+. +..+.|.|+
T Consensus        52 ~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~-~~~~~l~V~   90 (91)
T d1cs6a3          52 SSEPLLHIQNVDFEDEGTYECEAENIKGRD-TYQGRIIIH   90 (91)
T ss_dssp             BSSSEEEECSCCGGGCEEEEEEEEETTEEE-EEEEEEEEE
T ss_pred             eeeeEEEeCCCCccCCEEEEEEEEECCCEE-EEEEEEEEE
Confidence            467899999999999999999999999986 457888886

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=1.1e-10  Score=66.43  Aligned_cols=36  Identities=14%  Similarity=0.181  Sum_probs=31.9

Q ss_pred             CEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEE
Q psy7035          21 QSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYD   57 (70)
Q Consensus        21 ~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~   57 (70)
                      .+|+|.+++++|+|.|+|.|+|..|.. +..+.|.|.
T Consensus        94 ~~L~I~~v~~~D~G~Y~C~a~N~~G~~-~~~~~l~V~  129 (130)
T d1gxea_          94 SIFTVEGAEKEDEGVYTVTVKNPVGED-QVNLTVKVI  129 (130)
T ss_dssp             EEEECSCCCTTTCEEEEEEEECSSCEE-EEEEEEEEC
T ss_pred             EEEEECcCChhcCEEEEEEEEECCCEE-EEEEEEEEE
Confidence            479999999999999999999999985 557888885

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=3.2e-11  Score=67.69  Aligned_cols=43  Identities=14%  Similarity=0.220  Sum_probs=35.2

Q ss_pred             cccCeEcCcCccceEEecCCEEEEcccCCCCCeeeEEEeEeCCC
Q psy7035           2 SFSNVQLYNNISAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEG   45 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G   45 (70)
                      +|||+++..+. +.....+++|.|.+++++|+|.|+|.|.|..+
T Consensus        42 ~k~~~~l~~~~-~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~   84 (93)
T d1n26a1          42 VLRKPAAGSHP-SRWAGMGRRLLLRSVQLHDSGNYSCYRAGRPA   84 (93)
T ss_dssp             EEECSSSSCCC-EEEEEESSEEEECSCCGGGCEEEEEESSSSCS
T ss_pred             EEcccccccee-eEEecCCCEEEECCCChhcCEEEEEEECCccc
Confidence            57888886554 44556789999999999999999999998654

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=1.2e-11  Score=69.24  Aligned_cols=56  Identities=23%  Similarity=0.313  Sum_probs=40.5

Q ss_pred             cccCeEcCcCccce---------EEecCCEEEEcccCCCCCeeeEEEeEeCCCccc-ceeEEEEEE
Q psy7035           2 SFSNVQLYNNISAG---------VIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQ-SNAQKTAYD   57 (70)
Q Consensus         2 ~~ng~~l~~~~~~~---------~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~-s~~~~L~V~   57 (70)
                      +|||+++..+.+..         .....++|+|.+++.+|+|.|+|.|+|..|+.. |..++|+|.
T Consensus        38 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~v~v~v~  103 (104)
T d1nbqa2          38 FKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRMEAV  103 (104)
T ss_dssp             EETTCCCCSCSSSSSSCTTCCCCCCTTTCCEEESSCCGGGCCCEEEEEECSSSCCEECCCBCCEEE
T ss_pred             EECCEEccCCCceeEEeeCCcEEEeecccceEECCCCcccCcEEEEEEEECCCceEEEEEEEEEEE
Confidence            46777765433211         112346899999999999999999999999765 456777764

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=6.3e-11  Score=66.66  Aligned_cols=36  Identities=17%  Similarity=0.170  Sum_probs=33.7

Q ss_pred             EEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEE
Q psy7035          22 SLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYD   57 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~   57 (70)
                      +|.|.+++.+|+|.|+|.|+|..|...+.++.|.|.
T Consensus        66 ~L~I~~v~~~D~G~Y~C~A~N~~G~~~s~~~~l~V~  101 (104)
T d2aw2a1          66 ILHFEPVLPNDNGSYRCSANFQSNLIESHSTTLYVT  101 (104)
T ss_dssp             EEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEE
T ss_pred             EEEEccccHHHCCeEEEEEEcCCCeEEEEEEEEEEE
Confidence            599999999999999999999999888888999986

>d2nxyb2 b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD4 C2-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=1.1e-10  Score=63.81  Aligned_cols=43  Identities=12%  Similarity=0.139  Sum_probs=36.4

Q ss_pred             eEEecCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEe
Q psy7035          15 GVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDI   58 (70)
Q Consensus        15 ~~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~   58 (70)
                      .....+.+|+|.+++++|+|.|+|.|+|..|.... .+.|.|+.
T Consensus        39 ~~~~~~~~l~i~~v~~~DsG~Y~C~a~N~~g~~~~-~~~v~V~~   81 (84)
T d2nxyb2          39 KNIQGGKTLSVSQLELQDSGTWTCTVLQNQKKVEF-KIDIVVLA   81 (84)
T ss_dssp             CEEEESSEEEESSCCGGGCEEEEEEEEETTEEEEE-EEEECEEC
T ss_pred             cceeeeeeeeeeecccccccEEEEEEEeCCCEEEE-EEEEEEEe
Confidence            34456789999999999999999999999997644 68888873

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=6.3e-12  Score=69.63  Aligned_cols=54  Identities=15%  Similarity=0.203  Sum_probs=39.8

Q ss_pred             cccCeEcCcCccceEEecCCEEEEcccCCCCCe-eeEEEeEeCCCcccceeEEEEE
Q psy7035           2 SFSNVQLYNNISAGVIVSNQSLVLQNVSRARAG-HYTCVGSNGEGDGQSNAQKTAY   56 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~~~~~tL~i~~v~~~D~G-~Y~C~a~N~~G~~~s~~~~L~V   56 (70)
                      ++||.++...........+.+|+|.+++++|.| .|+|.|+|..|.... .+.|.|
T Consensus        37 ~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~~Y~C~a~N~~G~~~~-s~~l~V   91 (92)
T d2ifga1          37 ILTELEQSATVMKSGGLPSLGLTLANVTSDLNRKNVTCWAENDVGRAEV-SVQVNV   91 (92)
T ss_dssp             EESCCCSSEEECCCCCSSEEEEEEESCCSTTTTCCEEECCEETTEECCE-EECCCC
T ss_pred             EECCceeeeeeeeeeeccceeEEEccccccccceEEEEEEEcCCCEEEE-EEEEEE
Confidence            466666654433333345578999999999999 699999999998744 566665

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

Probab=99.02  E-value=1.1e-10  Score=64.50  Aligned_cols=51  Identities=16%  Similarity=0.223  Sum_probs=40.7

Q ss_pred             cccCeEcCcCccceEEecCC--EEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEE
Q psy7035           2 SFSNVQLYNNISAGVIVSNQ--SLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYD   57 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~~~~~--tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~   57 (70)
                      +|||+++..+++..+...++  +|.|.+++.+|+|.|+|.|.|..+     ++.|.|.
T Consensus        35 ~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~n~~~-----sa~l~V~   87 (89)
T d1tiua_          35 KLKGQPLTASPDCEIIEDGKKHILILHNCQLGMTGEVSFQAANAKS-----AANLKVK   87 (89)
T ss_dssp             CSSSCCCCSSSSCEEEECSSCEEEECCSCCSCCCSEECCBCSSCBC-----CEEEEEE
T ss_pred             EEeeeecccceeEEEEeeceeEEEEEcCCChhcCEEEEEEECceEE-----EEEEEEE
Confidence            68999998777666555443  799999999999999999988643     4678775

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=1.7e-11  Score=69.62  Aligned_cols=43  Identities=19%  Similarity=0.288  Sum_probs=34.8

Q ss_pred             EEEEcccCCCC-CeeeEEEeEeCCCcccceeEEEEEEeCCCCCCCC
Q psy7035          22 SLVLQNVSRAR-AGHYTCVGSNGEGDGQSNAQKTAYDIGLGIPAEP   66 (70)
Q Consensus        22 tL~i~~v~~~D-~G~Y~C~a~N~~G~~~s~~~~L~V~~~p~~~~~p   66 (70)
                      +|.|.+++++| +|.|+|.|+|..|.+ +..+.|.|.. ++.++|+
T Consensus        70 ~L~I~~v~~~D~~G~Y~C~A~N~~G~~-~~~~~L~V~~-~~~~~P~  113 (115)
T d2crya1          70 TLTISNIVRADFQTIYNCTAWNSFGSD-TEIIRLKEQG-SEMSGPS  113 (115)
T ss_dssp             EEECTTCCHHHHHSCEEEEEECSSCEE-EEEECCCCSC-SSCCCCC
T ss_pred             EEEEeccchhcCCeEEEEEEEECCCeE-EEEEEEEEEC-CCCCCCC
Confidence            69999999999 799999999999986 6678888863 2444443

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=2.5e-10  Score=64.74  Aligned_cols=38  Identities=13%  Similarity=0.122  Sum_probs=33.5

Q ss_pred             EEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeCC
Q psy7035          22 SLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGL   60 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~p   60 (70)
                      +|.|.+++++|+|.|+|.|+|..|.. +..+.|.|...|
T Consensus        69 ~L~I~~v~~~D~G~Y~C~a~N~~G~~-~~~~~L~V~~~~  106 (113)
T d2dava1          69 EMQIIKAKDNFAGNYRCEVTYKDKFD-SCSFDLEVHEST  106 (113)
T ss_dssp             EEEECSCCTTSCEEEEEEEECSSCEE-EECCEEEEECCC
T ss_pred             EEEEccCCHHHCeEEEEEEEeCCCEE-EEEEEEEEEcCC
Confidence            69999999999999999999999986 447899998444

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.00  E-value=2.4e-10  Score=63.55  Aligned_cols=51  Identities=14%  Similarity=0.056  Sum_probs=38.2

Q ss_pred             cccCeEcCcCcc-ceEEecCC--EEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEE
Q psy7035           2 SFSNVQLYNNIS-AGVIVSNQ--SLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYD   57 (70)
Q Consensus         2 ~~ng~~l~~~~~-~~~~~~~~--tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~   57 (70)
                      ||||++|..+.+ ..+...++  +|+|.+++.+|+|.|+|.|.|.     +.++.|.|.
T Consensus        40 ~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~n~-----~~s~~l~V~   93 (94)
T d1pd6a_          40 LKNGQEIQMSGSKYIFESIGAKRTLTISQCSLADDAAYQCVVGGE-----KCSTELFVK   93 (94)
T ss_dssp             EESSSEECCCSSSSEEEEETTEEEEEECSCSSSSCEEEEEEETTE-----EECCEEEEE
T ss_pred             EEcCccceeeeeeEeeeccCCeEEeecCCCCceecEEEEEEEeeE-----EEEEEEEEE
Confidence            689999976543 33444443  6999999999999999999884     335677775

>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.99  E-value=2.5e-10  Score=63.59  Aligned_cols=40  Identities=25%  Similarity=0.463  Sum_probs=32.5

Q ss_pred             EEecCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEE
Q psy7035          16 VIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAY   56 (70)
Q Consensus        16 ~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V   56 (70)
                      ....+++|.|.+++++|+|.|+|.|+|..|..... +.|+|
T Consensus        63 ~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~G~~~~~-~~v~v  102 (105)
T d1nbqa1          63 VTFLPTGITFKSVTREDTGTYTCMVSEEGGNSYGE-VKVKL  102 (105)
T ss_dssp             CEEETTEEECSCCCTTSCSEEEEEEEETTSSCEEC-CEEEC
T ss_pred             eeecCceEEEecccccceeeEEEEEEECCCCEEEE-EEEEE
Confidence            34467899999999999999999999999987653 34443

>d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=98.97  E-value=3e-10  Score=62.11  Aligned_cols=35  Identities=14%  Similarity=0.271  Sum_probs=30.6

Q ss_pred             cCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEE
Q psy7035          19 SNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAY   56 (70)
Q Consensus        19 ~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V   56 (70)
                      .+.+|.|.+++.+|+|.|+|.|.|..   .|++++|+|
T Consensus        50 ~~~~l~i~~~~~~d~G~Y~C~a~~s~---~S~~v~L~V   84 (84)
T d1fnla1          50 QASSYFIDAATVNDSGEYRCQTNLST---LSDPVQLEV   84 (84)
T ss_dssp             SCSEEEESSCCGGGCEEEEEECSSSC---CCCCEEEEE
T ss_pred             cceeeEecCCcccCCEEEEEEccCCC---ccccEEEEC
Confidence            45789999999999999999998764   478899987

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.97  E-value=8.7e-10  Score=61.30  Aligned_cols=41  Identities=24%  Similarity=0.450  Sum_probs=33.0

Q ss_pred             EEecCCEEEEcccCCCCCeeeEEEeEeCCCcccce-eEEEEE
Q psy7035          16 VIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSN-AQKTAY   56 (70)
Q Consensus        16 ~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~-~~~L~V   56 (70)
                      ....+++|+|.+++.+|+|.|+|.|+|..|..... .+.|.|
T Consensus        60 ~~~~~~tL~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~v~v~V  101 (102)
T d1f97a1          60 VTFSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTV  101 (102)
T ss_dssp             EEEETTEEEESCCCGGGCEEEEEEEEETTSSSEEEEEEEEEE
T ss_pred             EEecCCEEEEeECCccCCEEEEEEEEECCCCEEEEEEEEEEE
Confidence            34567899999999999999999999999986543 344444

>d2fcba1 b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=98.97  E-value=2.3e-10  Score=62.65  Aligned_cols=45  Identities=13%  Similarity=0.118  Sum_probs=35.7

Q ss_pred             cccCeEcCcCccceEEecCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEE
Q psy7035           2 SFSNVQLYNNISAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYD   57 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~   57 (70)
                      +|||+.+..        .++.|.|.+++++|+|.|+|.|.|..   .|++++|+|.
T Consensus        40 ~~~g~~~~~--------~~~~l~i~~v~~~dsG~Y~C~a~ns~---~S~~v~l~V~   84 (85)
T d2fcba1          40 FHNGNLIPT--------HTQPSYRFKANNNDSGEYTCQTGQTS---LSDPVHLTVL   84 (85)
T ss_dssp             EETTEECTT--------CCSSEEEEECCGGGCEEEEEECTTSB---CCCCEEEEEE
T ss_pred             ecccccccc--------cccceEEeeccccCCcEEEEECCCCc---ccccEEEEEE
Confidence            455655543        34689999999999999999999864   4788999986

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.96  E-value=4.2e-10  Score=61.96  Aligned_cols=51  Identities=16%  Similarity=0.290  Sum_probs=37.9

Q ss_pred             cccCeEcCcCccc-e-EEecCC--EEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEE
Q psy7035           2 SFSNVQLYNNISA-G-VIVSNQ--SLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYD   57 (70)
Q Consensus         2 ~~ng~~l~~~~~~-~-~~~~~~--tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~   57 (70)
                      +|||+++..+++. . +..+++  +|+|.+++.+|+|.|+|.|.|.     +.++.|.|.
T Consensus        34 ~k~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~-----~~~a~l~V~   88 (90)
T d1x44a1          34 FKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKADAAEYSVMTTGG-----QSSAKLSVD   88 (90)
T ss_dssp             EETTEECCCSTTCSEEEEEETTEEEEEEEEECTTTCSEEEEEETTE-----EEEEEEEEE
T ss_pred             EEeecccCCCCCccEEEEEeCCccEEEECccccccCEEEEEEEecc-----eEEEEEEEE
Confidence            5789988765442 2 222333  8999999999999999999884     335788886

>d1f2qa1 b.1.1.4 (A:4-85) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.96  E-value=4.1e-10  Score=61.31  Aligned_cols=36  Identities=22%  Similarity=0.270  Sum_probs=31.2

Q ss_pred             cCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEE
Q psy7035          19 SNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYD   57 (70)
Q Consensus        19 ~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~   57 (70)
                      .+.+|.|.+++.+|+|.|+|.|.|..   .|+++.|.|.
T Consensus        46 ~~~~l~i~~v~~~d~G~Y~C~a~~s~---~S~~v~l~V~   81 (82)
T d1f2qa1          46 TNSSLNIVNAKFEDSGEYKCQHQQVN---ESEPVYLEVF   81 (82)
T ss_dssp             CSSEEEECSCCGGGCEEEEEECTTSS---CCCCEEEEEE
T ss_pred             ccceeEECCCChhhCCcEEEEecCCC---CcccEEEEEE
Confidence            45689999999999999999998854   4788999985

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

Probab=98.96  E-value=3e-10  Score=63.52  Aligned_cols=36  Identities=28%  Similarity=0.376  Sum_probs=32.0

Q ss_pred             CEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEE
Q psy7035          21 QSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYD   57 (70)
Q Consensus        21 ~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~   57 (70)
                      .+|.|.+++++|+|.|+|.|+|..|.... .++|.|.
T Consensus        74 ~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~-~~~L~Vl  109 (109)
T d2fdbp2          74 EVLYIRNVTFEDAGEYTCLAGNSIGISFH-SAWLTVL  109 (109)
T ss_dssp             EEEEECSCCGGGCEEEEEEEECSSCEEEE-EEEEEEC
T ss_pred             EEEEECCCCHHHCeEEEEEEEECCCEEEE-EEEEEEC
Confidence            57999999999999999999999998755 6888873

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.94  E-value=6.3e-10  Score=62.86  Aligned_cols=36  Identities=17%  Similarity=0.157  Sum_probs=32.5

Q ss_pred             CEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEE
Q psy7035          21 QSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYD   57 (70)
Q Consensus        21 ~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~   57 (70)
                      .+|.|.+++++|+|.|+|.|+|..|... ..+.|.|.
T Consensus        72 ~~L~I~~v~~~D~G~Y~C~a~N~~G~~~-~~~~L~V~  107 (110)
T d2avga1          72 FELHITDAQPAFTGGYRCEVSTKDKFDC-SNFNLTVH  107 (110)
T ss_dssp             EEEEEESCCTTCCEEEEEEEEETTEEEE-EEEEEEEE
T ss_pred             EEEEEeccCHHHCcEEEEEEEECCCeEE-EEEEEEEE
Confidence            3699999999999999999999999874 47899987

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.90  E-value=6e-10  Score=61.40  Aligned_cols=35  Identities=17%  Similarity=0.202  Sum_probs=29.9

Q ss_pred             EEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEe
Q psy7035          23 LVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDI   58 (70)
Q Consensus        23 L~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~   58 (70)
                      +.|.+++++|+|.|+|.|+|..|+. +..+.|.|..
T Consensus        49 ~~~~~v~~~d~G~Y~C~A~N~~G~~-~~~~~l~V~~   83 (84)
T d2oz4a3          49 GESVTVTRDLEGTYLCRARSTQGEV-TREVTVNVLS   83 (84)
T ss_dssp             TSCEECCGGGCEEEEEEEEETTEEE-EEEEEEEEEC
T ss_pred             eeeeccccCCCCEEEEEEEcCCCEE-EEEEEEEEEC
Confidence            4567899999999999999999986 5579999973

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.90  E-value=9.1e-10  Score=61.03  Aligned_cols=35  Identities=23%  Similarity=0.501  Sum_probs=30.4

Q ss_pred             EEEEcccC-CCCCeeeEEEeEeCCCcccceeEEEEEE
Q psy7035          22 SLVLQNVS-RARAGHYTCVGSNGEGDGQSNAQKTAYD   57 (70)
Q Consensus        22 tL~i~~v~-~~D~G~Y~C~a~N~~G~~~s~~~~L~V~   57 (70)
                      +|+|.+++ +.|+|.|+|.|+|..|.. +..+.|.|.
T Consensus        66 ~L~I~~v~~~~D~G~Y~C~A~N~~G~~-~~~~~L~Vr  101 (101)
T d3b5ha1          66 ELHIENLNMEADPGQYRCNGTSSKGSD-QAIITLRVR  101 (101)
T ss_dssp             EEEECSCCTTTSSEEEEEEEEETTEEE-EEEEEEEEC
T ss_pred             EEEEeccccccCCEEEEEEEEECCCEE-EEEEEEEEC
Confidence            79999998 579999999999999986 456888873

>d1l6za1 b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.86  E-value=7.1e-10  Score=63.39  Aligned_cols=44  Identities=20%  Similarity=0.192  Sum_probs=37.3

Q ss_pred             ceEEecCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEE
Q psy7035          14 AGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYD   57 (70)
Q Consensus        14 ~~~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~   57 (70)
                      |..+..|++|.|.+|+.+|+|.|+|.+.+.-+...+..+.|.|+
T Consensus        64 R~~l~~ngSL~I~~v~~~D~G~Y~c~v~~~~~~~~~~~v~L~Vy  107 (107)
T d1l6za1          64 REIIYSNGSLLFQMITMKDMGVYTLDMTDENYRRTQATVRFHVH  107 (107)
T ss_dssp             SEEECTTSCEEECSCCGGGCEEEEEEEEETTEEECCCCEEECCC
T ss_pred             EEEEcccccEEEcCCCchhCEEEEEEEEECCCCEEEEEEEEEEC
Confidence            45567899999999999999999999999877666667888763

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.82  E-value=1.6e-09  Score=59.41  Aligned_cols=35  Identities=14%  Similarity=0.062  Sum_probs=29.5

Q ss_pred             cCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEE
Q psy7035          19 SNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAY   56 (70)
Q Consensus        19 ~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V   56 (70)
                      .+++|+|.+++.+|+|.|+|.|.|..+.   ..+.|.|
T Consensus        58 ~~~sL~I~~l~~~DsG~Y~c~~~n~~~t---~~~~l~V   92 (93)
T d1ccza1          58 VSGSLTIYNLTSSDEDEYEMESPNITDT---MKFFLYV   92 (93)
T ss_dssp             TTCCEEECSCCGGGCEEEEEECTTCCSC---EEEEEEE
T ss_pred             CeeEEEEEecChhhCEEEEEEEECCCcE---EEEEEEE
Confidence            4679999999999999999999998763   3467776

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.81  E-value=3.7e-09  Score=60.24  Aligned_cols=44  Identities=20%  Similarity=0.152  Sum_probs=35.6

Q ss_pred             CEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeCCCCCCC
Q psy7035          21 QSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGLGIPAE   65 (70)
Q Consensus        21 ~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~p~~~~~   65 (70)
                      .+|+|.+++.+|+|.|.|.+.|..|.. +..+.|.|..++-.-++
T Consensus        81 ~sL~I~~v~~~D~G~Y~C~v~~~~~~~-~~~v~L~V~~P~~~~~p  124 (126)
T d1pkoa_          81 VALRIQNVRFSDEGGYTCFFRDHSYQE-EAAVELKVEDPFYWINP  124 (126)
T ss_dssp             EEEEESSCCGGGCEEEEEEEEETTEEE-EEEEEEEEECTTTTSST
T ss_pred             EEEEEEEEchhHCeEEEEEEEECCCEE-EEEEEEEEeCCCEEeCC
Confidence            489999999999999999999986654 56789999865544443

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.75  E-value=8.6e-10  Score=62.49  Aligned_cols=54  Identities=6%  Similarity=-0.028  Sum_probs=36.3

Q ss_pred             cccCeEcCcCccceEEecCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEE
Q psy7035           2 SFSNVQLYNNISAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYD   57 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~   57 (70)
                      ++|+++|....... .....+|+|..++.+|.|.|+|.|+|.+|+... .+.+.|.
T Consensus        42 ~~~~~~l~~~~~~~-~~~~s~l~i~~~~~dd~g~ytC~A~n~~g~~~~-~~~~~~s   95 (103)
T d1iama1          42 LRGEKELKREPAVG-EPAEVTTTVLVRRDHHGAQFSCRTELDLRPQGL-ELFENTS   95 (103)
T ss_dssp             EETTEEEEEEECCT-TTEEEEEEEECCSSCSSCEEEEEEEEECGGGTS-CEEEEEC
T ss_pred             cccccccccccccc-ccceEEEEEeeehhHCCCEEEEEEEeCCCCccC-eEeeeEc
Confidence            45666664321110 012347999999999999999999999997543 4556654

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.68  E-value=1.3e-08  Score=56.73  Aligned_cols=33  Identities=15%  Similarity=0.228  Sum_probs=27.1

Q ss_pred             CEEEEcccCCCCCe-eeEEEeEeCCCcccceeEEE
Q psy7035          21 QSLVLQNVSRARAG-HYTCVGSNGEGDGQSNAQKT   54 (70)
Q Consensus        21 ~tL~i~~v~~~D~G-~Y~C~a~N~~G~~~s~~~~L   54 (70)
                      .+|+|.+++++|.| .|+|.|+|..|.... .+.|
T Consensus        70 ~~L~I~~v~~~D~g~~Y~C~A~N~~G~~~~-~i~L  103 (107)
T d1iray3          70 TVLNISEIESRFYKHPFTCFAKNTHGIDAA-YIQL  103 (107)
T ss_dssp             EEEEESSCCGGGGSSCEEEEEECSSCEEEE-EEEE
T ss_pred             EEEEEeecchHHCCcEEEEEEEeCCCeEEE-EEEE
Confidence            47999999999999 599999999997532 4444

>d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=98.63  E-value=2.9e-08  Score=56.68  Aligned_cols=35  Identities=17%  Similarity=0.286  Sum_probs=29.6

Q ss_pred             eEEecCCEEEEcccCCCCCe---eeEEEeEeCCCcccc
Q psy7035          15 GVIVSNQSLVLQNVSRARAG---HYTCVGSNGEGDGQS   49 (70)
Q Consensus        15 ~~~~~~~tL~i~~v~~~D~G---~Y~C~a~N~~G~~~s   49 (70)
                      .....+++|+|.+++.+|+|   .|+|.|+|..|....
T Consensus        57 ~~~~~~~~L~i~~v~~~D~gd~g~Y~C~A~N~~g~~~~   94 (111)
T d1biha2          57 ITAGPDGNLYFTIVTKEDVSDIYKYVCTAKNAAVDEEV   94 (111)
T ss_dssp             EEECTTSCEEEEEECGGGCCSSEEEEEEEECTTCSSCE
T ss_pred             eccccccccEEeeeEeeccCCceEEEEEEEeCCCCceE
Confidence            34457889999999999988   599999999997654

>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-2 (ICAM-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.52  E-value=6.3e-09  Score=58.91  Aligned_cols=55  Identities=5%  Similarity=-0.059  Sum_probs=34.3

Q ss_pred             cccCeEcCcCccceEEec--C--CEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEE
Q psy7035           2 SFSNVQLYNNISAGVIVS--N--QSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYD   57 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~~~--~--~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~   57 (70)
                      ++||++|...........  +  .+|.|...+.+|.|.|+|.|+|.+|.. +..+.+.+.
T Consensus        40 ~~~~~~i~~~~~~~~~~~~~~~~s~l~~~~~~~d~g~~ytC~A~n~~~~~-~~~~~~~~s   98 (106)
T d1zxqa1          40 FRGNETLHYETFGKAAPAPQEATATFNSTADREDGHRNFSCLAVLDLMSR-GGNIFHKHS   98 (106)
T ss_dssp             EETTEEEEEEECCSSTTCTTCEEEEEEEECCGGGGGCEEEEEEEEECGGG-TCCEEEEEC
T ss_pred             EcCCEEeeecccceEeecccceeEEEEEeeehhcCCcEEEEEEEecCCCC-CCeeEeccc
Confidence            577887754322111111  1  257778777888889999999998853 334555553

>d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car), domain 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Coxsackie virus and adenovirus receptor (Car), domain 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.42  E-value=1.3e-07  Score=53.03  Aligned_cols=36  Identities=17%  Similarity=0.249  Sum_probs=31.1

Q ss_pred             CEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEE
Q psy7035          21 QSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYD   57 (70)
Q Consensus        21 ~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~   57 (70)
                      .+|+|.+++.+|+|.|.|.+.|..|. .+..+.|.|.
T Consensus        88 ~sL~I~~v~~~D~G~Y~C~v~~~~~~-~~~~~~L~V~  123 (124)
T d1eaja_          88 ASINVTNLQLSDIGTYQCKVKKAPGV-ANKKIHLVVL  123 (124)
T ss_dssp             CCEEECSCCGGGCEEEEEEEEETTEE-EEEEEEEEEE
T ss_pred             EEEEEcccEEccCEEEEEEEEECCCe-EEeEEEEEEE
Confidence            47999999999999999999998764 4667888885

>d1ucta1 b.1.1.4 (A:2-100) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.35  E-value=2.2e-07  Score=51.72  Aligned_cols=37  Identities=19%  Similarity=0.316  Sum_probs=32.5

Q ss_pred             CCEEEEcccCCCCCeeeEEEeEeCCC-cccceeEEEEE
Q psy7035          20 NQSLVLQNVSRARAGHYTCVGSNGEG-DGQSNAQKTAY   56 (70)
Q Consensus        20 ~~tL~i~~v~~~D~G~Y~C~a~N~~G-~~~s~~~~L~V   56 (70)
                      ...+.|.+|+..|+|.|.|...|... +..|+++.|.|
T Consensus        61 ~a~F~l~~vt~~~~G~Y~C~y~~~~~~S~~Sdpl~L~V   98 (99)
T d1ucta1          61 DPEFVIDHMDANKAGRYQCQYRIGHYRFRYSDTLELVV   98 (99)
T ss_dssp             CCEEEECSCCGGGCEEEEEEEEETTTEEEECCCEEEEE
T ss_pred             eEEEEecCCCHHHCceEEEEEECCCcccCCCCCEEEEe
Confidence            34699999999999999999999866 66799999987

>d1neua_ b.1.1.1 (A:) Myelin membrane adhesion molecule P0 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin membrane adhesion molecule P0
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.27  E-value=5.2e-07  Score=50.57  Aligned_cols=37  Identities=22%  Similarity=0.310  Sum_probs=27.6

Q ss_pred             CEEEEcccCCCCCeeeEEEeEeCCC-cccceeEEEEEE
Q psy7035          21 QSLVLQNVSRARAGHYTCVGSNGEG-DGQSNAQKTAYD   57 (70)
Q Consensus        21 ~tL~i~~v~~~D~G~Y~C~a~N~~G-~~~s~~~~L~V~   57 (70)
                      .+|.|.+++.+|+|.|.|.+.+.-+ ......++|.|.
T Consensus        81 ~sL~I~~v~~~DsG~Y~C~v~~~~~~~~~~~~v~L~V~  118 (119)
T d1neua_          81 GSIVIHNLDYSDNGTFTCDVKNPPDIVGKTSQVTLYVF  118 (119)
T ss_dssp             CCEEECSCCGGGCEEEEEEEEC----CCEEEEEEEEEE
T ss_pred             EEEEECCCChHHCEEEEEEEEECCCcCceEEEEEEEEE
Confidence            4899999999999999999998644 223445778775

>d2nxyb1 b.1.1.1 (B:1001-1097) CD4 V-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD4 V-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.11  E-value=9.3e-07  Score=48.58  Aligned_cols=31  Identities=13%  Similarity=0.275  Sum_probs=24.9

Q ss_pred             CEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEE
Q psy7035          21 QSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAY   56 (70)
Q Consensus        21 ~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V   56 (70)
                      -+|+|.+++.+|+|.|.|.+.|.     +..+.|.|
T Consensus        67 ~sL~I~~l~~~DsG~Y~C~v~~~-----~~~v~L~V   97 (97)
T d2nxyb1          67 FPLIIKNLKIEDSDTYICEVEDQ-----KEEVQLLV   97 (97)
T ss_dssp             CCEEECSCCGGGCEEEEEEETTE-----EEEEEEEE
T ss_pred             EEEEECCCChHHCEEEEEEEecC-----CeEEEEEC
Confidence            37999999999999999999763     34556654

>d1dr9a1 b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD80, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.10  E-value=3.8e-06  Score=46.48  Aligned_cols=28  Identities=32%  Similarity=0.489  Sum_probs=23.9

Q ss_pred             CCEEEEcccCCCCCeeeEEEeEeCCCcc
Q psy7035          20 NQSLVLQNVSRARAGHYTCVGSNGEGDG   47 (70)
Q Consensus        20 ~~tL~i~~v~~~D~G~Y~C~a~N~~G~~   47 (70)
                      +-+|.|++++.+|+|.|.|.+.+..+..
T Consensus        64 ~~sL~I~~v~~~D~G~Y~C~V~~~~~~~   91 (105)
T d1dr9a1          64 NLSIVILALRPSDEGTYECVVLKYEKDA   91 (105)
T ss_dssp             TTEEEECSCCGGGCEEEEEEEEECCTTS
T ss_pred             cEEEEECcCChHHCeEEEEEEEeCCCCC
Confidence            3489999999999999999998765544

>d1xeda_ b.1.1.1 (A:) Polymeric-immunoglobulin receptor, PIGR {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Polymeric-immunoglobulin receptor, PIGR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.05  E-value=2.5e-06  Score=47.88  Aligned_cols=38  Identities=16%  Similarity=0.137  Sum_probs=29.9

Q ss_pred             EEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeCC
Q psy7035          22 SLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGL   60 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~p   60 (70)
                      +|+|.+++.+|+|.|.|.+.. .|......+.|+|..++
T Consensus        75 sL~I~~l~~~DsG~Y~C~v~~-~~~~~~~~v~L~V~~~~  112 (116)
T d1xeda_          75 VVNIAQLSQDDSGRYKCGLGI-NSRGLSFDVSLEVLEHH  112 (116)
T ss_dssp             EEEECSCCGGGCEEEEEEESC-GGGCCEEEEEEEEECCC
T ss_pred             EEEEhhhCcCCCEEEEEEEEc-CCCCceEeEEEEEECCC
Confidence            799999999999999998763 34444557889987543

>d1ncna_ b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD86 (b7-2), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.03  E-value=6.4e-06  Score=45.61  Aligned_cols=40  Identities=18%  Similarity=0.212  Sum_probs=28.6

Q ss_pred             ecCCEEEEcccCCCCCeeeEEEeEeC--CCcc--cceeEEEEEE
Q psy7035          18 VSNQSLVLQNVSRARAGHYTCVGSNG--EGDG--QSNAQKTAYD   57 (70)
Q Consensus        18 ~~~~tL~i~~v~~~D~G~Y~C~a~N~--~G~~--~s~~~~L~V~   57 (70)
                      ..+-+|+|++++.+|+|.|.|.....  .|..  ....+.|.|.
T Consensus        66 ~~~~sL~I~~v~~~D~G~Y~C~V~~~~~~~~~~~~~~~~~L~V~  109 (110)
T d1ncna_          66 SDSWTLRLHNLQIKDKGLYQCIIHHKKPTGMIRIHQMNSELSVL  109 (110)
T ss_dssp             TTTTEEEECSCCGGGCEEEEEEEEEECSSSEEEEEEEEEEEEEE
T ss_pred             CCeEEEEECCCChhHCEEEEEEEEecCCCceEEEEcceEEEEEE
Confidence            35668999999999999999987643  3322  2335666664

>d1hkfa_ b.1.1.1 (A:) NK cell activating receptor NKP44 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: NK cell activating receptor NKP44
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.86  E-value=1.6e-05  Score=44.15  Aligned_cols=24  Identities=17%  Similarity=0.419  Sum_probs=21.0

Q ss_pred             EEEEcccCCCCCeeeEEEeEeCCC
Q psy7035          22 SLVLQNVSRARAGHYTCVGSNGEG   45 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N~~G   45 (70)
                      +|+|.+++.+|+|.|.|.....-.
T Consensus        71 ~L~I~~l~~~DsG~Y~C~v~~~~~   94 (108)
T d1hkfa_          71 TVTMTDLREEDSGHYWCRIYRPSD   94 (108)
T ss_dssp             EEEECSCCGGGCEEEEEEEECTTT
T ss_pred             EEEEhhhCCCCCEEEEEEEecCCC
Confidence            799999999999999998875543

>d1olla1 b.1.1.4 (A:1-95) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.82  E-value=1.1e-05  Score=44.47  Aligned_cols=37  Identities=22%  Similarity=0.350  Sum_probs=32.2

Q ss_pred             CEEEEcccCCCCCeeeEEEeEeCCC-cccceeEEEEEE
Q psy7035          21 QSLVLQNVSRARAGHYTCVGSNGEG-DGQSNAQKTAYD   57 (70)
Q Consensus        21 ~tL~i~~v~~~D~G~Y~C~a~N~~G-~~~s~~~~L~V~   57 (70)
                      ..+.|.+|+..|+|.|.|...+..+ +..|+++.|.|.
T Consensus        57 a~F~i~~v~~~~~G~Y~C~y~~~~~~S~~Sd~leL~VT   94 (95)
T d1olla1          57 VKFYIPDMNSRMAGQYSCIYRVGELWSEPSNLLDLVVT   94 (95)
T ss_dssp             EEEEESSCCGGGCEEEEEEEEETTEECCCCCCEEEEEE
T ss_pred             EEEEEeeeecCCCceEEEEeCCCCCccCCCCCEEEEEe
Confidence            3699999999999999999998744 677999999885

>d1hnfa1 b.1.1.1 (A:4-104) CD2, first domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.78  E-value=3.2e-05  Score=43.88  Aligned_cols=44  Identities=9%  Similarity=0.093  Sum_probs=37.6

Q ss_pred             ceEEecCCEEEEcccCCCCCeeeEEEeEeCCCcccce-eEEEEEE
Q psy7035          14 AGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSN-AQKTAYD   57 (70)
Q Consensus        14 ~~~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~-~~~L~V~   57 (70)
                      ..-++.||||.|.++.++|+|.|.-.+-|.-|....+ .+.|.|+
T Consensus        56 ~y~i~~nGtLkIK~L~~~d~GtYkv~vYd~~Gk~vlektf~LkI~  100 (101)
T d1hnfa1          56 TYKLFKNGTLKIKHLKTDDQDIYKVSIYDTKGKNVLEKIFDLKIQ  100 (101)
T ss_dssp             TEEECTTSCEEECSCCGGGCEEEEEEEEETTSCEEEEEEEEEEEE
T ss_pred             eEEEccCCcEEeeeeeecCCCcEEEEEEcCCCcEeeeeeEEEEee
Confidence            4667899999999999999999999999999966544 5777775

>d1qfoa_ b.1.1.1 (A:) N-terminal domain of sialoadhesin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialoadhesin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.75  E-value=1.7e-05  Score=43.31  Aligned_cols=38  Identities=11%  Similarity=0.156  Sum_probs=26.4

Q ss_pred             CCEEEEcccCCCCCeeeEEEeEeCCCccc--ceeEEEEEE
Q psy7035          20 NQSLVLQNVSRARAGHYTCVGSNGEGDGQ--SNAQKTAYD   57 (70)
Q Consensus        20 ~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~--s~~~~L~V~   57 (70)
                      +.+|+|.+++.+|+|.|.|.++...+..-  ..-+.|+|.
T Consensus        78 ~~sL~I~~v~~~DsG~Y~C~v~~~~~~~~~~~~~~~ltVt  117 (118)
T d1qfoa_          78 VCNLLLKDLKPEDSGTYNFRFEISDSNRWLDVKGTTVTVT  117 (118)
T ss_dssp             BCCEEECSCCGGGCEEEEEEEECC-CCEEECSSCEEEEEE
T ss_pred             EEEEEECCCChhHCEEEEEEEEeCCCCeEEcCCCEEEEEe
Confidence            34799999999999999998876533211  234566663

>d2cdea1 b.1.1.1 (A:2-115) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.68  E-value=4.2e-05  Score=43.00  Aligned_cols=24  Identities=25%  Similarity=0.383  Sum_probs=21.5

Q ss_pred             CEEEEcccCCCCCeeeEEEeEeCC
Q psy7035          21 QSLVLQNVSRARAGHYTCVGSNGE   44 (70)
Q Consensus        21 ~tL~i~~v~~~D~G~Y~C~a~N~~   44 (70)
                      -+|+|.+++.+|+|.|.|.+....
T Consensus        72 ~sL~i~~~~~~Dsg~Y~Ca~~~~~   95 (114)
T d2cdea1          72 SSLHITASQLSDSASYICVVSDRG   95 (114)
T ss_dssp             EEEEECSCCGGGCSEEEEEEECSC
T ss_pred             cccEEcccChhhCcccceeeecCC
Confidence            379999999999999999998753

>d2g5ra1 b.1.1.1 (A:24-144) N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.64  E-value=2.2e-05  Score=44.09  Aligned_cols=37  Identities=16%  Similarity=0.178  Sum_probs=26.3

Q ss_pred             CCEEEEcccCCCCCeeeEEEeEeCCCc--ccceeEEEEE
Q psy7035          20 NQSLVLQNVSRARAGHYTCVGSNGEGD--GQSNAQKTAY   56 (70)
Q Consensus        20 ~~tL~i~~v~~~D~G~Y~C~a~N~~G~--~~s~~~~L~V   56 (70)
                      +-+|+|.+++.+|+|.|.|........  -....++|.|
T Consensus        82 ~~sL~I~~v~~~DsG~Y~C~v~~~~~~~~~~~~~~~l~V  120 (121)
T d2g5ra1          82 NCTLSIRDARMSDAGRYFFRMEKGNIKWNYKYDQLSVNV  120 (121)
T ss_dssp             BCCEEECSCCGGGCEEEEEEEEETTEEEECTTSCEEEEE
T ss_pred             EEEEEECCCChHHCEEEEEEEEeCCcceeeeCCCEEEEE
Confidence            347999999999999999998754221  1224466655

>d1smoa_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.38  E-value=7.8e-05  Score=41.64  Aligned_cols=21  Identities=24%  Similarity=0.433  Sum_probs=18.8

Q ss_pred             EEEEcccCCCCCeeeEEEeEe
Q psy7035          22 SLVLQNVSRARAGHYTCVGSN   42 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N   42 (70)
                      +|+|.+++.+|+|.|.|...-
T Consensus        77 ~Lti~~l~~~Dsg~Y~Cav~~   97 (113)
T d1smoa_          77 RVRMVNLQVEDSGLYQCVIYQ   97 (113)
T ss_dssp             EEEECSCCGGGCEEEEEEECC
T ss_pred             EEEEccCCcccCceEEEEEEC
Confidence            599999999999999997654

>d1vcaa1 b.1.1.3 (A:91-199) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.36  E-value=0.00011  Score=40.78  Aligned_cols=38  Identities=8%  Similarity=0.053  Sum_probs=27.0

Q ss_pred             EEEEcccCCCCCe-eeEEEeEeCCCccc------ceeEEEEEEeCC
Q psy7035          22 SLVLQNVSRARAG-HYTCVGSNGEGDGQ------SNAQKTAYDIGL   60 (70)
Q Consensus        22 tL~i~~v~~~D~G-~Y~C~a~N~~G~~~------s~~~~L~V~~~p   60 (70)
                      +|+|.- +++|.| .|+|.|+|.++...      +.+..|+|+|.|
T Consensus        65 ~l~~~~-~~~D~g~~ltC~a~~~~~~~~~~~~~~~t~~~L~V~~~P  109 (109)
T d1vcaa1          65 EVTFTP-VIEDIGKVLVCRAKLHIDEMDSVPTVRQAVKELQVYISP  109 (109)
T ss_dssp             EEEECC-CGGGTTCEEEEEEEECSCCCTTSCSEEEEEEECCEECCC
T ss_pred             EEEccC-ChHHCCcEEEEEEEcCcCCccccccccceeEEeEEEeCC
Confidence            566664 455555 79999999876543      345679999887

>d2atpb1 b.1.1.1 (B:1-115) CD8 {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=97.34  E-value=0.00015  Score=40.57  Aligned_cols=22  Identities=23%  Similarity=0.372  Sum_probs=19.5

Q ss_pred             CEEEEcccCCCCCeeeEEEeEe
Q psy7035          21 QSLVLQNVSRARAGHYTCVGSN   42 (70)
Q Consensus        21 ~tL~i~~v~~~D~G~Y~C~a~N   42 (70)
                      -+|+|.+++.+|+|.|.|.+..
T Consensus        79 ~~L~I~~~~~~Dsg~Y~Ca~~~  100 (115)
T d2atpb1          79 PFLSIMNVKPEDSDFYFCATVG  100 (115)
T ss_dssp             CEEEECSCCGGGCEEEEEEEEC
T ss_pred             EEEeecccCCCCCcEEEEeEcC
Confidence            3799999999999999997753

>d1tvda_ b.1.1.1 (A:) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=97.32  E-value=0.00018  Score=40.44  Aligned_cols=24  Identities=21%  Similarity=0.285  Sum_probs=20.9

Q ss_pred             EEEEcccCCCCCeeeEEEeEeCCC
Q psy7035          22 SLVLQNVSRARAGHYTCVGSNGEG   45 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N~~G   45 (70)
                      +|+|.+++.+|+|.|.|......+
T Consensus        77 ~L~I~~~~~~Dsg~YyCa~~~~~~  100 (116)
T d1tvda_          77 HLVISPVRTEDSATYYCAFTLPPP  100 (116)
T ss_dssp             EEEESSCCGGGCEEEEEEEECTTT
T ss_pred             eeeecCccccccccceeeEecCCC
Confidence            799999999999999998776543

>d1ospl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.28  E-value=0.0001  Score=41.31  Aligned_cols=23  Identities=13%  Similarity=0.260  Sum_probs=20.4

Q ss_pred             CEEEEcccCCCCCeeeEEEeEeC
Q psy7035          21 QSLVLQNVSRARAGHYTCVGSNG   43 (70)
Q Consensus        21 ~tL~i~~v~~~D~G~Y~C~a~N~   43 (70)
                      -+|+|.+++.+|+|.|.|.+...
T Consensus        71 ~~L~I~~~~~~Dsa~YyCa~~~~   93 (107)
T d1ospl1          71 YTLSITSLQTEDVATYFCQQYWS   93 (107)
T ss_dssp             EEEEESSCCGGGCSEEEEEECSS
T ss_pred             EEeEEcccccccCCcEEEeeccC
Confidence            47999999999999999987653

>d2ak4d1 b.1.1.1 (D:1-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.28  E-value=0.00019  Score=39.98  Aligned_cols=24  Identities=13%  Similarity=0.139  Sum_probs=21.3

Q ss_pred             EEEEcccCCCCCeeeEEEeEeCCC
Q psy7035          22 SLVLQNVSRARAGHYTCVGSNGEG   45 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N~~G   45 (70)
                      +|+|.+++.+|+|.|.|.+....+
T Consensus        75 ~L~I~~~~~~Dsg~YyCa~~~~~~   98 (114)
T d2ak4d1          75 NFTITASQVVDSAVYFCALSGFYN   98 (114)
T ss_dssp             EEEESSCCGGGCEEEEEEEECSBT
T ss_pred             EEeecccccccCCCceEeCCCCCC
Confidence            799999999999999998877544

>d1i9ea_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=97.27  E-value=0.00017  Score=40.44  Aligned_cols=37  Identities=16%  Similarity=0.032  Sum_probs=25.3

Q ss_pred             CEEEEcccCCCCCeeeEEEeEeCCCcc-cceeEEEEEE
Q psy7035          21 QSLVLQNVSRARAGHYTCVGSNGEGDG-QSNAQKTAYD   57 (70)
Q Consensus        21 ~tL~i~~v~~~D~G~Y~C~a~N~~G~~-~s~~~~L~V~   57 (70)
                      -+|+|.+++.+|+|.|.|.+....... -..--.|.|.
T Consensus        73 ~~L~I~~~~~~Dsg~YyCa~~~~~~~~~FG~GT~L~V~  110 (115)
T d1i9ea_          73 FHLRKASVHWSDSAVYFCAVSGFASALTFGSGTKVIVL  110 (115)
T ss_dssp             CCEEESSCCGGGCEEEEEEEEETTEEEEECCCEEEEEE
T ss_pred             EEEecccccccccceecccccCCCCCCEECCCEEEEEe
Confidence            379999999999999999876432111 1122466666

>d1kcvl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.27  E-value=0.00016  Score=40.18  Aligned_cols=22  Identities=23%  Similarity=0.360  Sum_probs=19.7

Q ss_pred             CEEEEcccCCCCCeeeEEEeEe
Q psy7035          21 QSLVLQNVSRARAGHYTCVGSN   42 (70)
Q Consensus        21 ~tL~i~~v~~~D~G~Y~C~a~N   42 (70)
                      -+|+|.+++.+|+|.|.|.+..
T Consensus        71 ~~L~I~~l~~~DSa~YyCa~~~   92 (107)
T d1kcvl1          71 FTLTISSVQADDDADYYCGQSY   92 (107)
T ss_dssp             EEEEESSCCGGGCEEEEEEECS
T ss_pred             eecEEHhheecCCceEEEEecC
Confidence            4799999999999999998754

>d1i8ka_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.26  E-value=0.0001  Score=41.19  Aligned_cols=23  Identities=22%  Similarity=0.420  Sum_probs=20.1

Q ss_pred             CEEEEcccCCCCCeeeEEEeEeC
Q psy7035          21 QSLVLQNVSRARAGHYTCVGSNG   43 (70)
Q Consensus        21 ~tL~i~~v~~~D~G~Y~C~a~N~   43 (70)
                      -+|+|++++.+|+|.|.|.+.+.
T Consensus        71 ~~L~I~~~~~~Dsa~YyCa~~~~   93 (106)
T d1i8ka_          71 FVFTIENTLSEDVGDYYCLQSFN   93 (106)
T ss_dssp             EEEEESSCCGGGCEEEEEEECSS
T ss_pred             eeecccCCccccCEEEeEecCcc
Confidence            37999999999999999987653

>d1j1pl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.26  E-value=0.00013  Score=40.66  Aligned_cols=23  Identities=26%  Similarity=0.469  Sum_probs=20.2

Q ss_pred             CEEEEcccCCCCCeeeEEEeEeC
Q psy7035          21 QSLVLQNVSRARAGHYTCVGSNG   43 (70)
Q Consensus        21 ~tL~i~~v~~~D~G~Y~C~a~N~   43 (70)
                      -+|+|.+++.+|+|.|.|.+.+.
T Consensus        71 ~~L~I~~~~~~Dsa~YyCa~~~~   93 (107)
T d1j1pl_          71 FTLSINSVETEDFGMYFCQQANS   93 (107)
T ss_dssp             EEEEESSCCGGGCEEEEEEECSS
T ss_pred             EEEEEcccCcCCCEEEEEEcCCC
Confidence            37999999999999999977653

>d1j8hd1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.24  E-value=0.0003  Score=39.35  Aligned_cols=22  Identities=23%  Similarity=0.336  Sum_probs=20.3

Q ss_pred             EEEEcccCCCCCeeeEEEeEeC
Q psy7035          22 SLVLQNVSRARAGHYTCVGSNG   43 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N~   43 (70)
                      +|+|.+++.+|+|.|.|.+...
T Consensus        74 ~L~I~~~~~~Dsa~YyCa~~~~   95 (115)
T d1j8hd1          74 HLTKPSAHMSDAAEYFCAVSES   95 (115)
T ss_dssp             CEEESSCCGGGCEEEEEEEESS
T ss_pred             EEeeccccccCCccceeeecCC
Confidence            6999999999999999998764

>d1ogad1 b.1.1.1 (D:3-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.24  E-value=0.00036  Score=39.29  Aligned_cols=37  Identities=22%  Similarity=0.415  Sum_probs=26.4

Q ss_pred             CEEEEcccCCCCCeeeEEEeEeCCCc-ccceeEEEEEE
Q psy7035          21 QSLVLQNVSRARAGHYTCVGSNGEGD-GQSNAQKTAYD   57 (70)
Q Consensus        21 ~tL~i~~v~~~D~G~Y~C~a~N~~G~-~~s~~~~L~V~   57 (70)
                      .+|+|.+++.+|+|.|.|.+....+. .-..--.|.|.
T Consensus        71 ~~L~I~~~~~~Dsa~YyCa~~~~~~~~~FG~GT~LtV~  108 (115)
T d1ogad1          71 SSLHITAAQPGDTGLYLCAGAGSQGNLIFGKGTKLSVK  108 (115)
T ss_dssp             EEEEESSCCGGGCEEEEEEEECTTSSEEECCCEEEEEE
T ss_pred             eeeeecCCCccceeeEcccccCCCCCcEECCCEEEEEe
Confidence            37999999999999999988754332 11223467776

>d2gsia1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=97.19  E-value=0.00021  Score=40.19  Aligned_cols=23  Identities=22%  Similarity=0.332  Sum_probs=20.2

Q ss_pred             CEEEEcccCCCCCeeeEEEeEeC
Q psy7035          21 QSLVLQNVSRARAGHYTCVGSNG   43 (70)
Q Consensus        21 ~tL~i~~v~~~D~G~Y~C~a~N~   43 (70)
                      -+|+|.+++.+|++.|.|.+...
T Consensus        75 ~~L~I~~~~~~DsA~YyCa~~~~   97 (111)
T d2gsia1          75 FTLNIHPVEEEDAATYYCSHIRE   97 (111)
T ss_dssp             EEEEESSCCGGGCEEEEEEECSS
T ss_pred             hhcccccccccCCceEEEEECCC
Confidence            37999999999999999987654

>d1j05a_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=97.18  E-value=0.00014  Score=40.82  Aligned_cols=22  Identities=23%  Similarity=0.508  Sum_probs=19.9

Q ss_pred             EEEEcccCCCCCeeeEEEeEeC
Q psy7035          22 SLVLQNVSRARAGHYTCVGSNG   43 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N~   43 (70)
                      +|.|.+++.+|+|.|.|.+.+.
T Consensus        76 ~L~I~~~~~~Dsa~YyCa~~~~   97 (111)
T d1j05a_          76 TLIIDPVEADDVATYYCQQTNE   97 (111)
T ss_dssp             EEEESSCCGGGCEEEEEEECSS
T ss_pred             EEEEcccccccCccEEEeecCC
Confidence            7999999999999999987653

>d2fx7l1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 3.2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 3.2 [TaxId: 9606]

Probab=97.18  E-value=0.00015  Score=40.33  Aligned_cols=21  Identities=14%  Similarity=0.306  Sum_probs=19.3

Q ss_pred             EEEEcccCCCCCeeeEEEeEe
Q psy7035          22 SLVLQNVSRARAGHYTCVGSN   42 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N   42 (70)
                      +|+|.+++.+|+|.|.|.+.+
T Consensus        73 ~L~I~~~~~~Dsa~YyCa~~~   93 (108)
T d2fx7l1          73 TLTISRLEPEDFAVYYCQQYG   93 (108)
T ss_dssp             EEEESSCCGGGCSEEEEEECS
T ss_pred             EEEehHheecccEEEeeecCC
Confidence            699999999999999998764

>d1c5cl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.17  E-value=0.00015  Score=40.71  Aligned_cols=23  Identities=17%  Similarity=0.362  Sum_probs=20.2

Q ss_pred             CEEEEcccCCCCCeeeEEEeEeC
Q psy7035          21 QSLVLQNVSRARAGHYTCVGSNG   43 (70)
Q Consensus        21 ~tL~i~~v~~~D~G~Y~C~a~N~   43 (70)
                      -+|.|.+++.+|+|.|.|.+.+.
T Consensus        71 ~~L~I~~l~~~Dsa~YyCa~~~~   93 (107)
T d1c5cl1          71 YSLTISSLESEDFADYYCLQYAS   93 (107)
T ss_dssp             EEEEESSCCGGGCSEEEEEECSS
T ss_pred             EEEEEhhhcccCCeEEEEecCcC
Confidence            48999999999999999977653

>d2esvd1 b.1.1.1 (D:4-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.16  E-value=0.00046  Score=38.39  Aligned_cols=36  Identities=14%  Similarity=0.338  Sum_probs=25.3

Q ss_pred             EEEEcccCCCCCeeeEEEeEeCCCccc---ceeEEEEEE
Q psy7035          22 SLVLQNVSRARAGHYTCVGSNGEGDGQ---SNAQKTAYD   57 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N~~G~~~---s~~~~L~V~   57 (70)
                      +|.|.+++.+|+|.|.|.+....+...   ..--.|.|.
T Consensus        70 ~L~I~~~~~~Dsa~YyCa~~~~~~~~~~~FG~GT~L~V~  108 (110)
T d2esvd1          70 TLILPHATLRDTAVYYCIVVRSSNTGKLIFGQGTTLQVK  108 (110)
T ss_dssp             EEEESSCCGGGCEEEEEEEEESCSSCCCCCCCCEEEEEE
T ss_pred             eehhcccccCCceEEEEEEeCCCCCCccEECCCEEEEEE
Confidence            699999999999999998764322111   122467775

>d1nkra1 b.1.1.4 (A:6-101) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=97.14  E-value=0.00025  Score=39.15  Aligned_cols=35  Identities=20%  Similarity=0.393  Sum_probs=28.5

Q ss_pred             EEEEcccCCCCCeeeEEEeEeC----CCcccceeEEEEE
Q psy7035          22 SLVLQNVSRARAGHYTCVGSNG----EGDGQSNAQKTAY   56 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N~----~G~~~s~~~~L~V   56 (70)
                      ...|.+|+..|+|.|.|.-...    ..+..|+++.|.|
T Consensus        58 ~F~l~~v~~~~~G~Y~C~y~~~~~p~~wS~pSdpLeL~V   96 (96)
T d1nkra1          58 NFSISRMTQDLAGTYRCYGSVTHSPYQVSAPSDPLDIVI   96 (96)
T ss_dssp             EEEESSCCGGGCEEEEEEEEBTTBTTCCCCCCCCEEEEE
T ss_pred             EEEEcccCcccCeEEEEEEEcCCCCCcccCCCCCEEEEC
Confidence            5899999999999999966533    4567788988876

>d1lp9e1 b.1.1.1 (E:0-117) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=97.13  E-value=0.00041  Score=38.86  Aligned_cols=23  Identities=13%  Similarity=0.117  Sum_probs=20.4

Q ss_pred             EEEEcccCCCCCeeeEEEeEeCC
Q psy7035          22 SLVLQNVSRARAGHYTCVGSNGE   44 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N~~   44 (70)
                      +|.|.+++.+|+|.|.|.+....
T Consensus        74 ~L~I~~~~~~Dsg~YyCa~~~~~   96 (115)
T d1lp9e1          74 HLQKSSAQLSDSALYYCALFLAS   96 (115)
T ss_dssp             CEEESSCCGGGCEEEEEEEEECS
T ss_pred             EeeccccccccCccceEEEEcCC
Confidence            59999999999999999877653

>d1mexl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.10  E-value=0.0002  Score=39.99  Aligned_cols=22  Identities=27%  Similarity=0.448  Sum_probs=19.5

Q ss_pred             CEEEEcccCCCCCeeeEEEeEe
Q psy7035          21 QSLVLQNVSRARAGHYTCVGSN   42 (70)
Q Consensus        21 ~tL~i~~v~~~D~G~Y~C~a~N   42 (70)
                      -.|+|.+++.+|++.|.|.+..
T Consensus        71 ~~L~I~~~~~~DsA~YyCa~~~   92 (107)
T d1mexl1          71 FTLTINNVQSEDLAEYFCQQYN   92 (107)
T ss_dssp             EEEEESSCCGGGCSEEEEEECS
T ss_pred             eeeeechhheecceeEEEeECC
Confidence            3699999999999999998654

>d1op3k1 b.1.1.1 (K:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=97.08  E-value=0.00026  Score=39.43  Aligned_cols=21  Identities=14%  Similarity=0.301  Sum_probs=19.4

Q ss_pred             EEEEcccCCCCCeeeEEEeEe
Q psy7035          22 SLVLQNVSRARAGHYTCVGSN   42 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N   42 (70)
                      +|.|.+++.+|+|.|.|.+..
T Consensus        71 ~L~I~~~~~~Dsa~YyCa~~~   91 (106)
T d1op3k1          71 TLTISGLQFDDFATYHCQHYA   91 (106)
T ss_dssp             EEEEESCCGGGCSEEEEEEEC
T ss_pred             EEEEccccccCCCcEeeeeCC
Confidence            699999999999999998764

>d1jhll_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.08  E-value=0.00031  Score=39.43  Aligned_cols=22  Identities=18%  Similarity=0.397  Sum_probs=19.8

Q ss_pred             EEEEcccCCCCCeeeEEEeEeC
Q psy7035          22 SLVLQNVSRARAGHYTCVGSNG   43 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N~   43 (70)
                      +|+|.+++.+|+|.|.|.+.+.
T Consensus        72 ~L~i~~l~~~Dsa~YyCA~~~~   93 (108)
T d1jhll_          72 TLTISSLEPEDFAMYICQQHNE   93 (108)
T ss_dssp             EEEECSCCTTCCSEEEEEECSS
T ss_pred             EeEeeeeEeccceEEEEeeCCC
Confidence            7999999999999999976654

>d1d5il1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.08  E-value=0.00026  Score=39.49  Aligned_cols=23  Identities=22%  Similarity=0.431  Sum_probs=20.2

Q ss_pred             CEEEEcccCCCCCeeeEEEeEeC
Q psy7035          21 QSLVLQNVSRARAGHYTCVGSNG   43 (70)
Q Consensus        21 ~tL~i~~v~~~D~G~Y~C~a~N~   43 (70)
                      -+|.|.+++.+|+|.|.|.+...
T Consensus        71 ~~L~I~~~~~~Dsa~YyCa~~~~   93 (107)
T d1d5il1          71 YSLTISSLEYEDMGIYYCLQYDE   93 (107)
T ss_dssp             EEEEESSCCGGGCEEEEEEECSS
T ss_pred             EEccccccCCcCCEEEEeeeccC
Confidence            37999999999999999977653

>d2bnqd1 b.1.1.1 (D:2-114) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.07  E-value=0.00059  Score=37.97  Aligned_cols=24  Identities=17%  Similarity=0.361  Sum_probs=21.6

Q ss_pred             EEEEcccCCCCCeeeEEEeEeCCC
Q psy7035          22 SLVLQNVSRARAGHYTCVGSNGEG   45 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N~~G   45 (70)
                      +|+|.+++.+|+|.|.|.+....+
T Consensus        73 ~L~i~~~~~~Dsg~YyCa~~~~~~   96 (113)
T d2bnqd1          73 TLYIAASQPGDSATYLCAVRPTSG   96 (113)
T ss_dssp             EEEESSCCGGGCEEEEEEEEESSS
T ss_pred             EeeeecCCCCCCcEEeEeEecCCC
Confidence            899999999999999999886544

>d1nkra2 b.1.1.4 (A:102-200) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=97.07  E-value=0.00041  Score=38.27  Aligned_cols=35  Identities=17%  Similarity=0.213  Sum_probs=26.8

Q ss_pred             EEEEcccCCCCCeeeEEEeEeCC----CcccceeEEEEE
Q psy7035          22 SLVLQNVSRARAGHYTCVGSNGE----GDGQSNAQKTAY   56 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N~~----G~~~s~~~~L~V   56 (70)
                      ...|..++..|+|.|.|.-....    .+..|+++.|.|
T Consensus        60 ~f~~~~~~~~~~G~Y~C~y~~~~~p~~wS~~SdpLeL~V   98 (99)
T d1nkra2          60 QADFPLGPATHGGTYRCFGSFHDSPYEWSKSSDPLLVSV   98 (99)
T ss_dssp             EEEEEEEECCSCEEEEEEEEETTEEEEECCCCCCEEEEE
T ss_pred             EEEEeccccccCEEEEEEeecCCCCCCccCCCCCEEEEE
Confidence            35788899999999999655332    366688888877

>d1lk3l1 b.1.1.1 (L:1-106) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.06  E-value=0.00028  Score=39.19  Aligned_cols=21  Identities=24%  Similarity=0.363  Sum_probs=18.8

Q ss_pred             EEEEcccCCCCCeeeEEEeEe
Q psy7035          22 SLVLQNVSRARAGHYTCVGSN   42 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N   42 (70)
                      +|.|.+++.+|+|.|.|.+..
T Consensus        71 ~L~I~~~~~~Dsa~YyCa~~~   91 (106)
T d1lk3l1          71 TLTIDPVEADDTAIYFCQQSW   91 (106)
T ss_dssp             EEEESSCCGGGCEEEEEEECS
T ss_pred             EeEECCcChhhCCCccccccc
Confidence            799999999999999996553

>d1tjgl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=97.05  E-value=0.00022  Score=39.83  Aligned_cols=22  Identities=14%  Similarity=0.246  Sum_probs=19.4

Q ss_pred             EEEEcccCCCCCeeeEEEeEeC
Q psy7035          22 SLVLQNVSRARAGHYTCVGSNG   43 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N~   43 (70)
                      +|+|.+++.+|+|.|.|.+.+.
T Consensus        72 ~L~I~~l~~~DsA~YyCa~~~~   93 (107)
T d1tjgl1          72 TLTISTLRPEDFATYYCQQLHF   93 (107)
T ss_dssp             EEEESSCCGGGCSEEEEEECSB
T ss_pred             EEEeccceeCcCceEEEEECcC
Confidence            6999999999999999976543

>d8faba1 b.1.1.1 (A:3-105) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=97.03  E-value=0.00037  Score=38.35  Aligned_cols=23  Identities=17%  Similarity=0.388  Sum_probs=20.4

Q ss_pred             CEEEEcccCCCCCeeeEEEeEeC
Q psy7035          21 QSLVLQNVSRARAGHYTCVGSNG   43 (70)
Q Consensus        21 ~tL~i~~v~~~D~G~Y~C~a~N~   43 (70)
                      .+|.|.+++.+|+|.|.|.+.+.
T Consensus        68 ~~L~I~~l~~~Dsa~YyCA~~~~   90 (103)
T d8faba1          68 VTLTISGVQAEDEADYYCQAWDN   90 (103)
T ss_dssp             EEEEETTCCGGGCEEEEEEEEET
T ss_pred             cCceEcCcchhHCceEEeeecCC
Confidence            47999999999999999987653

>d1olla2 b.1.1.4 (A:96-188) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.03  E-value=0.00026  Score=38.84  Aligned_cols=37  Identities=30%  Similarity=0.350  Sum_probs=29.1

Q ss_pred             CEEEEcccCCCCCeeeEEEeE--eCCCcccceeEEEEEE
Q psy7035          21 QSLVLQNVSRARAGHYTCVGS--NGEGDGQSNAQKTAYD   57 (70)
Q Consensus        21 ~tL~i~~v~~~D~G~Y~C~a~--N~~G~~~s~~~~L~V~   57 (70)
                      ....|.+|+..|+|.|+|...  +..-+..|+++.|.|.
T Consensus        54 a~F~i~~v~~~~~G~Y~C~~~~~~~~wS~~SdpLeL~Vt   92 (93)
T d1olla2          54 AEFPLGPVTTAHRGTYRCFGSYNNHAWSFPSEPVKLLVT   92 (93)
T ss_dssp             EEEEEEECCGGGCEEEEEECEEETTEECCCCCCEEEEEE
T ss_pred             eEEEecccChhcCceEEEEeECCCCCcCCCCCCEEEEee
Confidence            468999999999999999643  3334566889988885

>d1ncwl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=97.03  E-value=0.00038  Score=39.22  Aligned_cols=21  Identities=24%  Similarity=0.444  Sum_probs=18.8

Q ss_pred             EEEEcccCCCCCeeeEEEeEe
Q psy7035          22 SLVLQNVSRARAGHYTCVGSN   42 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N   42 (70)
                      +|.|.+++.+|+|.|.|.+.+
T Consensus        77 ~L~I~~~~~eDsAvYYC~~~~   97 (112)
T d1ncwl1          77 TLKISRVEAEDLGVYYCWQGT   97 (112)
T ss_dssp             EEEESSCCGGGCEEEEEEECS
T ss_pred             EEEECccccCcCEeEEEEcCC
Confidence            699999999999999996544

>d1vesa_ b.1.1.1 (A:) Novel antigen receptor 12Y-2 {Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor 12Y-2
species: Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]

Probab=96.99  E-value=0.00077  Score=37.69  Aligned_cols=22  Identities=23%  Similarity=0.466  Sum_probs=20.2

Q ss_pred             EEEEcccCCCCCeeeEEEeEeC
Q psy7035          22 SLVLQNVSRARAGHYTCVGSNG   43 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N~   43 (70)
                      +|+|.+++.+|+|.|.|.+...
T Consensus        67 ~L~I~~l~~~Dsa~YyCa~~~~   88 (113)
T d1vesa_          67 SLRISDLRVEDSGTYKCQAFYS   88 (113)
T ss_dssp             EEEECSCCGGGCEEEEEEEEEE
T ss_pred             eeeecccccCCcceEeeeeecc
Confidence            7999999999999999998764

>d1ugna1 b.1.1.4 (A:2-97) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.98  E-value=0.00047  Score=37.84  Aligned_cols=38  Identities=11%  Similarity=0.270  Sum_probs=30.6

Q ss_pred             CCEEEEcccCCCCCeeeEEEeEeC--CCcccceeEEEEEE
Q psy7035          20 NQSLVLQNVSRARAGHYTCVGSNG--EGDGQSNAQKTAYD   57 (70)
Q Consensus        20 ~~tL~i~~v~~~D~G~Y~C~a~N~--~G~~~s~~~~L~V~   57 (70)
                      .....|.+|+.+|+|.|.|.-...  .-+..|+++.|.|.
T Consensus        56 ~a~F~i~~v~~~~~G~Y~C~y~~~~~~~S~~Sd~leL~Vt   95 (96)
T d1ugna1          56 KGQFPIPSITWEHTGRYRCYYGSDTAGRSESSDPLELVVT   95 (96)
T ss_dssp             TTEEEESSCCGGGCEEEEEEEEETTTEECCCCCCEEEEEE
T ss_pred             EEEEEEEecCHHHCCeEEEEEeCCCCCccccCCCEEEEEe
Confidence            357999999999999999987653  23677888888874

>d1nezg_ b.1.1.1 (G:) CD8 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.96  E-value=0.00024  Score=40.38  Aligned_cols=20  Identities=30%  Similarity=0.488  Sum_probs=18.7

Q ss_pred             EEEEcccCCCCCeeeEEEeE
Q psy7035          22 SLVLQNVSRARAGHYTCVGS   41 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~   41 (70)
                      +|+|.+++.+|+|.|.|.+.
T Consensus        83 ~L~I~~~~~~Dsg~YyCa~~  102 (122)
T d1nezg_          83 VLTLNKFSKENEGYYFCSVI  102 (122)
T ss_dssp             EEEESSCCGGGCEEEEEEEE
T ss_pred             EEEEcccccCCCEEEEeeEe
Confidence            69999999999999999765

>d2gj6d1 b.1.1.1 (D:15-114) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=96.96  E-value=0.00026  Score=38.44  Aligned_cols=22  Identities=18%  Similarity=0.483  Sum_probs=19.9

Q ss_pred             EEEEcccCCCCCeeeEEEeEeC
Q psy7035          22 SLVLQNVSRARAGHYTCVGSNG   43 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N~   43 (70)
                      +|+|.+++.+|+|.|.|.+...
T Consensus        58 sL~I~~~~~~Dsg~YyCa~~~~   79 (94)
T d2gj6d1          58 SLLIRDSQPSDSATYLCAVTTD   79 (94)
T ss_dssp             EEEECSCCGGGCEEEEEEEESS
T ss_pred             eEEeeccccCcCccceeeEecC
Confidence            6999999999999999987753

>d1akjd_ b.1.1.1 (D:) CD8 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.92  E-value=0.00028  Score=39.56  Aligned_cols=21  Identities=29%  Similarity=0.542  Sum_probs=19.5

Q ss_pred             EEEEcccCCCCCeeeEEEeEe
Q psy7035          22 SLVLQNVSRARAGHYTCVGSN   42 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N   42 (70)
                      +|+|.+++.+|+|.|.|.+..
T Consensus        78 ~L~I~~l~~~Dsg~YyCa~~~   98 (114)
T d1akjd_          78 VLTLSDFRRENEGYYFCSALS   98 (114)
T ss_dssp             EEEESSCCGGGCEEEEEEEEE
T ss_pred             hcEEccCCCCCCEEEeEeEcC
Confidence            799999999999999998764

>d1fo0a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=96.92  E-value=0.00094  Score=37.01  Aligned_cols=24  Identities=17%  Similarity=0.349  Sum_probs=20.8

Q ss_pred             EEEEcccCCCCCeeeEEEeEeCCC
Q psy7035          22 SLVLQNVSRARAGHYTCVGSNGEG   45 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N~~G   45 (70)
                      +|+|.+++.+|+|.|.|.+.-..+
T Consensus        74 ~L~I~~~~~~Dsa~YyCa~~~~~~   97 (115)
T d1fo0a_          74 GLIITATQIEDSAVYFCAMRGDYG   97 (115)
T ss_dssp             EEEECSCCGGGCEEEEEEEECCCT
T ss_pred             EEEECCCCccccccccceeecCCC
Confidence            699999999999999998775443

>d1u9ka_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.92  E-value=0.00069  Score=38.19  Aligned_cols=35  Identities=14%  Similarity=0.253  Sum_probs=25.3

Q ss_pred             EEEEcccCCCCCeeeEEEeEeCCCccc--ceeEEEEE
Q psy7035          22 SLVLQNVSRARAGHYTCVGSNGEGDGQ--SNAQKTAY   56 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N~~G~~~--s~~~~L~V   56 (70)
                      +|+|.+++.+|+|.|.|.....-....  ...++|.|
T Consensus        73 ~lti~~L~~eDsa~YyCa~~~~~~~~~~~~~~~~L~V  109 (110)
T d1u9ka_          73 QVQMTDLQVTDSGLYRCVIYHPPNDPVVLFHPVRLVV  109 (110)
T ss_dssp             EEEECSCCGGGCEEEEEEEECTTSCCEECSCCEEEEE
T ss_pred             EEEECccccCCCEEEEEEEeCCCCCCEEEECCEEEEE
Confidence            599999999999999998765433211  23566666

>d1ucta2 b.1.1.4 (A:101-196) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.90  E-value=0.00056  Score=37.59  Aligned_cols=36  Identities=25%  Similarity=0.244  Sum_probs=29.0

Q ss_pred             CEEEEcccCCCCCeeeEEEeEeCC----CcccceeEEEEE
Q psy7035          21 QSLVLQNVSRARAGHYTCVGSNGE----GDGQSNAQKTAY   56 (70)
Q Consensus        21 ~tL~i~~v~~~D~G~Y~C~a~N~~----G~~~s~~~~L~V   56 (70)
                      ....|.+|+.+|+|.|.|.-....    .+..|+++.|.|
T Consensus        56 a~F~l~~v~~~~~G~Y~C~y~~~~~p~~~S~~Sd~leL~V   95 (96)
T d1ucta2          56 ANFSLGPVDLNVSGIYRCYGWYNRSPYLWSFPSNALELVV   95 (96)
T ss_dssp             EEEECCSCCGGGCEEEEEEEECTTSTTEECCCCCCEEEEE
T ss_pred             cEEEEeccccccCcEEEEEEEcCCCCCCccCCCCCEEEEE
Confidence            468899999999999999776432    366688888887

>d3bp5a1 b.1.1.1 (A:1-114) Programmed cell death protein 1, PD1, extracellular domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Programmed cell death protein 1, PD1, extracellular domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.88  E-value=0.00041  Score=38.87  Aligned_cols=22  Identities=18%  Similarity=0.351  Sum_probs=19.9

Q ss_pred             EEEEcccCCCCCeeeEEEeEeC
Q psy7035          22 SLVLQNVSRARAGHYTCVGSNG   43 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N~   43 (70)
                      +|.|.+++.+|+|.|.|.+...
T Consensus        74 ~L~I~~~~~~Dsg~YyCa~~~~   95 (114)
T d3bp5a1          74 HMNILDTRRNDSGIYLCGAISL   95 (114)
T ss_dssp             EEEESSCCGGGCEEEEEEEECS
T ss_pred             EEEECccCcCCCeEEEEEEEeC
Confidence            5999999999999999988754

>d1bwwa_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=96.87  E-value=0.00055  Score=38.04  Aligned_cols=21  Identities=10%  Similarity=0.339  Sum_probs=19.3

Q ss_pred             EEEEcccCCCCCeeeEEEeEe
Q psy7035          22 SLVLQNVSRARAGHYTCVGSN   42 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N   42 (70)
                      +|+|.+++.+|+|.|.|.+..
T Consensus        74 ~L~I~~l~~~Dsa~YyCA~~~   94 (109)
T d1bwwa_          74 TFTISSLQPEDIATYYCQQYQ   94 (109)
T ss_dssp             EEEESSCCGGGCEEEEEEECS
T ss_pred             EEEEeeceeCcCceEEEeecC
Confidence            799999999999999998764

>d1cd0a_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=96.87  E-value=0.00055  Score=38.04  Aligned_cols=22  Identities=18%  Similarity=0.440  Sum_probs=20.1

Q ss_pred             EEEEcccCCCCCeeeEEEeEeC
Q psy7035          22 SLVLQNVSRARAGHYTCVGSNG   43 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N~   43 (70)
                      +|.|++++.+|+|.|.|.+.+.
T Consensus        75 ~L~i~~l~~~Dsa~YyCA~~~~   96 (111)
T d1cd0a_          75 SLTISGLKTEDEADYYCQSYDA   96 (111)
T ss_dssp             EEEECSCCGGGCEEEEEEEEET
T ss_pred             ccccccCCcccCcEEEEeeccC
Confidence            7999999999999999987764

>d1h5ba_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=96.86  E-value=0.00094  Score=37.19  Aligned_cols=36  Identities=17%  Similarity=0.350  Sum_probs=25.6

Q ss_pred             EEEEcccCCCCCeeeEEEeEeCCCccc---ceeEEEEEE
Q psy7035          22 SLVLQNVSRARAGHYTCVGSNGEGDGQ---SNAQKTAYD   57 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N~~G~~~---s~~~~L~V~   57 (70)
                      +|.|.+++.+|+|.|.|.+....+...   ..-..|.|.
T Consensus        72 ~L~I~~~~~~Dsa~YyCa~~~~~~~~~~~FG~GT~L~V~  110 (113)
T d1h5ba_          72 TLHIRDAQLEDSGTYFCAAEASSGSWQLIFGSGTQLTVM  110 (113)
T ss_dssp             EEEECSCCGGGCEEEEEEEECSSSSSSCEECCCEEEEEE
T ss_pred             EEEECCCCHhHCEEEEEEecCCCCCCeeEECcCEEEEEE
Confidence            699999999999999998875443211   122456665

>d1n4xl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=96.84  E-value=0.00059  Score=38.33  Aligned_cols=23  Identities=22%  Similarity=0.390  Sum_probs=19.9

Q ss_pred             CEEEEcccCCCCCeeeEEEeEeC
Q psy7035          21 QSLVLQNVSRARAGHYTCVGSNG   43 (70)
Q Consensus        21 ~tL~i~~v~~~D~G~Y~C~a~N~   43 (70)
                      -+|+|.+++.+|+|.|.|.+.+.
T Consensus        77 ~~L~I~~~~~~DsavYyCa~~~~   99 (113)
T d1n4xl_          77 FTLKISRVEAEDLGIYYCFQGSH   99 (113)
T ss_dssp             EEEEESSCCGGGCEEEEEEECSS
T ss_pred             ccCccCCCCcccCEEEEEEECCC
Confidence            38999999999999999966543

>d2aq2a1 b.1.1.1 (A:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=96.83  E-value=0.00058  Score=37.89  Aligned_cols=22  Identities=23%  Similarity=0.516  Sum_probs=19.8

Q ss_pred             CEEEEcccCCCCCeeeEEEeEe
Q psy7035          21 QSLVLQNVSRARAGHYTCVGSN   42 (70)
Q Consensus        21 ~tL~i~~v~~~D~G~Y~C~a~N   42 (70)
                      -+|+|.+++.+|+|.|.|.+..
T Consensus        74 ~~L~I~~~~~~Dsa~YyCa~~~   95 (110)
T d2aq2a1          74 FSLILESATPSQTSVYFCASGG   95 (110)
T ss_dssp             EEEEESSCCGGGCEEEEEEEEE
T ss_pred             EEEEECCCCHhhCEEEEEeeCC
Confidence            4799999999999999998775

>d1oaql_ b.1.1.1 (L:) Immunoglobulin light chain lambda variable domain, VL-lambda {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.75  E-value=0.00072  Score=37.97  Aligned_cols=22  Identities=14%  Similarity=0.218  Sum_probs=20.1

Q ss_pred             CEEEEcccCCCCCeeeEEEeEe
Q psy7035          21 QSLVLQNVSRARAGHYTCVGSN   42 (70)
Q Consensus        21 ~tL~i~~v~~~D~G~Y~C~a~N   42 (70)
                      .+|.|.+++.+|+|.|.|.+..
T Consensus        73 ~~L~I~~~~~~Dsa~YyCa~~~   94 (110)
T d1oaql_          73 AALTITGAQTEDEAIYFCALWY   94 (110)
T ss_dssp             EEEEEESCCGGGCEEEEEEEEE
T ss_pred             eeeecCCCCccccEeEEEEccc
Confidence            4799999999999999998775

>d1u3ha1 b.1.1.1 (A:2-116) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=96.74  E-value=0.00039  Score=38.24  Aligned_cols=21  Identities=24%  Similarity=0.452  Sum_probs=19.4

Q ss_pred             EEEEcccCCCCCeeeEEEeEe
Q psy7035          22 SLVLQNVSRARAGHYTCVGSN   42 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N   42 (70)
                      +|.|.+++.+|+|.|.|.+.-
T Consensus        72 ~L~I~~~~~~Dsa~YyCa~~~   92 (110)
T d1u3ha1          72 SLHIADSQPGDSATYFCAASA   92 (110)
T ss_dssp             EEEESSCCTTSCSEEEECCEE
T ss_pred             EeEeccCCCCCceeEeeeecC
Confidence            799999999999999998763

>d1mjul1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=96.72  E-value=0.00075  Score=37.78  Aligned_cols=20  Identities=25%  Similarity=0.537  Sum_probs=17.9

Q ss_pred             EEEEcccCCCCCeeeEEEeE
Q psy7035          22 SLVLQNVSRARAGHYTCVGS   41 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~   41 (70)
                      +|+|++++.+|++.|.|...
T Consensus        77 ~L~Is~~~~~DsAvYyCa~~   96 (112)
T d1mjul1          77 TLRISRVEAEDVGVYYCLQH   96 (112)
T ss_dssp             EEEESSCCGGGCEEEEEEEC
T ss_pred             EEEECCccccCCceEEEEeC
Confidence            69999999999999999543

>d1lgva1 b.1.1.1 (A:1-112) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 4 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 4 [TaxId: 9606]

Probab=96.69  E-value=0.00063  Score=37.89  Aligned_cols=24  Identities=21%  Similarity=0.491  Sum_probs=20.9

Q ss_pred             CEEEEcccCCCCCeeeEEEeEeCC
Q psy7035          21 QSLVLQNVSRARAGHYTCVGSNGE   44 (70)
Q Consensus        21 ~tL~i~~v~~~D~G~Y~C~a~N~~   44 (70)
                      -+|.|.+++.+|+|.|.|.+.+..
T Consensus        73 ~~L~I~~l~~~Dsa~YyCa~~~~~   96 (112)
T d1lgva1          73 ASLTISGLQAEDEADYYCSSYDGS   96 (112)
T ss_dssp             EEEEECSCCGGGCEEEEEEEECSS
T ss_pred             eeEEeCcCccccCEEEEEeeecCC
Confidence            479999999999999999887643

>d3cx5k1 b.1.1.1 (K:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=96.68  E-value=0.00019  Score=40.12  Aligned_cols=22  Identities=23%  Similarity=0.345  Sum_probs=19.4

Q ss_pred             CEEEEcccCCCCCeeeEEEeEe
Q psy7035          21 QSLVLQNVSRARAGHYTCVGSN   42 (70)
Q Consensus        21 ~tL~i~~v~~~D~G~Y~C~a~N   42 (70)
                      -+|+|.+++.+|+|.|.|.+..
T Consensus        71 ~~L~I~~~~~~Dsa~YyCa~~~   92 (107)
T d3cx5k1          71 YSLTISNLEPEDIATYFCQHHI   92 (107)
T ss_dssp             EEEECSCCCSCCCSEEEEEECS
T ss_pred             EEEEEeEeeecCCCcEEeeeCC
Confidence            3899999999999999997643

>d1yjdc1 b.1.1.1 (C:1-118) CD28 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD28
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.67  E-value=0.0006  Score=38.12  Aligned_cols=22  Identities=23%  Similarity=0.243  Sum_probs=19.9

Q ss_pred             EEEEcccCCCCCeeeEEEeEeC
Q psy7035          22 SLVLQNVSRARAGHYTCVGSNG   43 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N~   43 (70)
                      +|+|.+++.+|+|.|.|.++..
T Consensus        78 ~L~I~~l~~~DsavYyCa~~~~   99 (118)
T d1yjdc1          78 TFYLQNLYVNQTDIYFCKIEVM   99 (118)
T ss_dssp             EEEEESCCGGGCEEEEEEEEEE
T ss_pred             EEEECCCCcccCeEEEEEEecc
Confidence            7999999999999999987654

>d1a0ql1 b.1.1.1 (L:2-108) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=96.64  E-value=0.00041  Score=38.58  Aligned_cols=21  Identities=19%  Similarity=0.400  Sum_probs=19.5

Q ss_pred             EEEEcccCCCCCeeeEEEeEe
Q psy7035          22 SLVLQNVSRARAGHYTCVGSN   42 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N   42 (70)
                      +|+|.+++.+|+|.|.|.+.+
T Consensus        71 ~L~I~~~~~~DsA~YyCa~~~   91 (106)
T d1a0ql1          71 SFSISNLEPEDIATYYCLQYY   91 (106)
T ss_dssp             EEEECSCCGGGCSEEEEEECS
T ss_pred             eeEehhhcccCCEeEEEEEeC
Confidence            799999999999999998765

>d1ymmd1 b.1.1.1 (D:9-104) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=96.64  E-value=0.00028  Score=38.71  Aligned_cols=24  Identities=25%  Similarity=0.480  Sum_probs=21.5

Q ss_pred             EEEEcccCCCCCeeeEEEeEeCCC
Q psy7035          22 SLVLQNVSRARAGHYTCVGSNGEG   45 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N~~G   45 (70)
                      +|+|.+++.+|+|.|.|.+....|
T Consensus        65 ~L~I~~~~~~Dsa~YyCA~~~~~g   88 (96)
T d1ymmd1          65 SLLITASRAADTASYFCATDTTSG   88 (96)
T ss_dssp             CBCCSSCCSTTCSCCEEEEEETTS
T ss_pred             ccCcCCCCcccCEEEeEeEecCCC
Confidence            699999999999999998877655

>d1kgce1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=96.54  E-value=0.00079  Score=37.35  Aligned_cols=21  Identities=24%  Similarity=0.501  Sum_probs=19.1

Q ss_pred             CEEEEcccCCCCCeeeEEEeE
Q psy7035          21 QSLVLQNVSRARAGHYTCVGS   41 (70)
Q Consensus        21 ~tL~i~~v~~~D~G~Y~C~a~   41 (70)
                      -+|+|.+++.+|+|.|.|.+.
T Consensus        73 ~~L~I~~~~~~Dsa~YyCa~~   93 (112)
T d1kgce1          73 STLKIQRTQQEDSAVYLCASS   93 (112)
T ss_dssp             EEEEESSCCGGGCEEEEEEEE
T ss_pred             EEEEECCCCcCCCEEEEEeee
Confidence            379999999999999999775

>d1rzfl1 b.1.1.1 (L:2-108) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=96.53  E-value=0.00092  Score=37.19  Aligned_cols=23  Identities=13%  Similarity=0.297  Sum_probs=20.4

Q ss_pred             CEEEEcccCCCCCeeeEEEeEeC
Q psy7035          21 QSLVLQNVSRARAGHYTCVGSNG   43 (70)
Q Consensus        21 ~tL~i~~v~~~D~G~Y~C~a~N~   43 (70)
                      -+|+|++++.+|+|.|.|.+...
T Consensus        72 ~~L~I~~~~~~Dsa~YyCA~~~~   94 (111)
T d1rzfl1          72 ATLGITGLQTGDEADYYCGTWDS   94 (111)
T ss_dssp             EEEEESSCCGGGCSEEEEEEEET
T ss_pred             eeeEEeeeccccCcceEEeecCC
Confidence            37999999999999999988753

>d1dqta_ b.1.1.1 (A:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.47  E-value=0.00093  Score=37.26  Aligned_cols=22  Identities=23%  Similarity=0.389  Sum_probs=19.9

Q ss_pred             CEEEEcccCCCCCeeeEEEeEe
Q psy7035          21 QSLVLQNVSRARAGHYTCVGSN   42 (70)
Q Consensus        21 ~tL~i~~v~~~D~G~Y~C~a~N   42 (70)
                      -+|+|.+++.+|+|.|.|.++.
T Consensus        75 ~~L~I~~l~~~Dsa~YyCa~~~   96 (117)
T d1dqta_          75 VNLTIQGLRAVDTGLYLCKVEL   96 (117)
T ss_dssp             EEEEECSCCGGGCEEEEEEEEE
T ss_pred             EEEEhhcCccccCEeEEEEEec
Confidence            3799999999999999998764

>d1mqkl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=96.45  E-value=0.00076  Score=37.67  Aligned_cols=22  Identities=23%  Similarity=0.332  Sum_probs=19.6

Q ss_pred             CEEEEcccCCCCCeeeEEEeEe
Q psy7035          21 QSLVLQNVSRARAGHYTCVGSN   42 (70)
Q Consensus        21 ~tL~i~~v~~~D~G~Y~C~a~N   42 (70)
                      -+|+|.+++.+|+|.|.|.+..
T Consensus        71 ~~L~I~~~~~~DSa~YyCA~~~   92 (109)
T d1mqkl_          71 FSLKINSLLPEDFGSYYCQHHY   92 (109)
T ss_dssp             EEEEESSCCGGGCEEEEEEECS
T ss_pred             EEEEEccccccCCeeEEEeeeC
Confidence            3799999999999999998763

>d1q9ra1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]

Probab=96.45  E-value=0.00075  Score=37.79  Aligned_cols=21  Identities=24%  Similarity=0.393  Sum_probs=19.2

Q ss_pred             EEEEcccCCCCCeeeEEEeEe
Q psy7035          22 SLVLQNVSRARAGHYTCVGSN   42 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N   42 (70)
                      +|.|.+++.+|+|.|.|.+.+
T Consensus        78 ~L~I~~l~~~Dsa~YyCA~~~   98 (113)
T d1q9ra1          78 TLTITSVQAEDLAVYYCKQSY   98 (113)
T ss_dssp             EEEESSCCGGGCEEEEEEECS
T ss_pred             eEEecccccCCCeEEEecccC
Confidence            699999999999999998754

>d1sq2n_ b.1.1.1 (N:) Novel antigen receptor (against lysozyme) {Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor (against lysozyme)
species: Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]

Probab=96.44  E-value=0.00099  Score=37.41  Aligned_cols=23  Identities=22%  Similarity=0.393  Sum_probs=20.4

Q ss_pred             EEEEcccCCCCCeeeEEEeEeCC
Q psy7035          22 SLVLQNVSRARAGHYTCVGSNGE   44 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N~~   44 (70)
                      +|+|.+++.+|+|.|.|.+.-..
T Consensus        66 ~L~I~~l~~~Dsa~YyCA~~~~~   88 (112)
T d1sq2n_          66 SLRINDLTVEDGGTYRCGLGVAG   88 (112)
T ss_dssp             EEEECSCCGGGCEEEEEEECBTT
T ss_pred             eeEecCCcCccCEEEeEEEecCC
Confidence            79999999999999999876543

>d2esve1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=96.44  E-value=0.00099  Score=36.94  Aligned_cols=21  Identities=29%  Similarity=0.499  Sum_probs=19.2

Q ss_pred             EEEEcccCCCCCeeeEEEeEe
Q psy7035          22 SLVLQNVSRARAGHYTCVGSN   42 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N   42 (70)
                      +|+|.+++.+|+|.|.|.+..
T Consensus        74 ~L~i~~~~~~Dsa~YyCa~~~   94 (111)
T d2esve1          74 TLKVQPAELEDSGVYFCASSQ   94 (111)
T ss_dssp             EEEESSCCGGGCEEEEEEEES
T ss_pred             EEEECCcccCCCceEEEeeeC
Confidence            799999999999999998664

>d1i8lc_ b.1.1.1 (C:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.35  E-value=0.0013  Score=36.74  Aligned_cols=22  Identities=23%  Similarity=0.357  Sum_probs=20.1

Q ss_pred             EEEEcccCCCCCeeeEEEeEeC
Q psy7035          22 SLVLQNVSRARAGHYTCVGSNG   43 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N~   43 (70)
                      +|.|++++.+|+|.|.|.++..
T Consensus        76 ~L~I~~l~~~Dsa~YyCa~~~~   97 (118)
T d1i8lc_          76 NLTIQGLRAMDTGLYICKVELM   97 (118)
T ss_dssp             EEEECSCCGGGCEEEEEEEEEE
T ss_pred             EEEeeccccCCCEEEEEeEecc
Confidence            7999999999999999988763

>d2ntsp1 b.1.1.1 (P:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=96.34  E-value=0.0012  Score=36.53  Aligned_cols=22  Identities=14%  Similarity=0.323  Sum_probs=20.0

Q ss_pred             EEEEcccCCCCCeeeEEEeEeC
Q psy7035          22 SLVLQNVSRARAGHYTCVGSNG   43 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N~   43 (70)
                      +|+|.+++.+|+|.|.|.+...
T Consensus        73 ~L~I~~~~~~Dsa~YyCA~~~~   94 (113)
T d2ntsp1          73 EMNVSTLELGDSALYLCASSLA   94 (113)
T ss_dssp             EEEECSCCGGGCEEEEEEEESS
T ss_pred             EEEECCCCcccceeeeeeeeCC
Confidence            7999999999999999988753

>d1bd2d1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=96.30  E-value=0.0013  Score=36.33  Aligned_cols=21  Identities=19%  Similarity=0.317  Sum_probs=19.4

Q ss_pred             EEEEcccCCCCCeeeEEEeEe
Q psy7035          22 SLVLQNVSRARAGHYTCVGSN   42 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N   42 (70)
                      +|.|.+++.+|+|.|.|.+..
T Consensus        73 ~L~I~~~~~~Dsa~YyCa~~~   93 (111)
T d1bd2d1          73 SLHIVPSQPGDSAVYFCAAME   93 (111)
T ss_dssp             EEEESSCCGGGCEEEEEEEES
T ss_pred             EEEECCCcccccEEEEeeccC
Confidence            899999999999999998763

>d1j8he1 b.1.1.1 (E:2-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=96.21  E-value=0.0016  Score=36.11  Aligned_cols=22  Identities=32%  Similarity=0.575  Sum_probs=19.9

Q ss_pred             CEEEEcccCCCCCeeeEEEeEe
Q psy7035          21 QSLVLQNVSRARAGHYTCVGSN   42 (70)
Q Consensus        21 ~tL~i~~v~~~D~G~Y~C~a~N   42 (70)
                      -+|+|.+++.+|+|.|.|.+..
T Consensus        73 ~~L~i~~~~~~Dsa~YyCa~~~   94 (113)
T d1j8he1          73 FSLILESASTNQTSMYLCASSS   94 (113)
T ss_dssp             CEEEESSCCGGGCEEEEEEEEC
T ss_pred             eeeEeccCccCCcccEEeeEcc
Confidence            3799999999999999998875

>d1kgcd1 b.1.1.1 (D:2-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=96.20  E-value=0.0038  Score=34.43  Aligned_cols=22  Identities=23%  Similarity=0.418  Sum_probs=19.5

Q ss_pred             EEEEcccCCCCCeeeEEEeEeC
Q psy7035          22 SLVLQNVSRARAGHYTCVGSNG   43 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N~   43 (70)
                      +|+|++++.+|+|.|.|.+.-.
T Consensus        70 ~L~i~~~~~~Dsa~YyCa~~~~   91 (112)
T d1kgcd1          70 TLILHRATLRDAAVYYCILPLA   91 (112)
T ss_dssp             EEEESSCCGGGCEEEEEECCCC
T ss_pred             EEEEeecccccceeEeeeEecC
Confidence            6999999999999999977543

>d1ogae1 b.1.1.1 (E:5-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=96.19  E-value=0.0024  Score=35.36  Aligned_cols=22  Identities=18%  Similarity=0.439  Sum_probs=19.5

Q ss_pred             CEEEEcccCCCCCeeeEEEeEe
Q psy7035          21 QSLVLQNVSRARAGHYTCVGSN   42 (70)
Q Consensus        21 ~tL~i~~v~~~D~G~Y~C~a~N   42 (70)
                      .+|.|.+++.+|+|.|.|.+..
T Consensus        72 ~~L~I~~~~~~DSa~YyCa~~~   93 (114)
T d1ogae1          72 FPLTVTSAQKNPTAFYLCASSS   93 (114)
T ss_dssp             CCEEECSCCSCCCEEEEEEEES
T ss_pred             EEEEECcCCcCCceeEEEeecc
Confidence            3699999999999999997664

>d1yqvl1 b.1.1.1 (L:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=96.18  E-value=0.0015  Score=35.88  Aligned_cols=21  Identities=24%  Similarity=0.414  Sum_probs=18.9

Q ss_pred             EEEEcccCCCCCeeeEEEeEe
Q psy7035          22 SLVLQNVSRARAGHYTCVGSN   42 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N   42 (70)
                      +|.|.+++.+|+|.|.|.+..
T Consensus        70 ~L~I~~~~~~Dsa~YyCa~~~   90 (104)
T d1yqvl1          70 SLTISSMETEDAATYYCQQWG   90 (104)
T ss_dssp             EEEESSCCGGGCEEEEEEECS
T ss_pred             EEEecccCcccCCeEEEEecC
Confidence            799999999999999997643

>d2ij0c1 b.1.1.1 (C:1-117) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=96.12  E-value=0.0025  Score=35.69  Aligned_cols=24  Identities=25%  Similarity=0.616  Sum_probs=20.8

Q ss_pred             EEEEcccCCCCCeeeEEEeEeCCC
Q psy7035          22 SLVLQNVSRARAGHYTCVGSNGEG   45 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N~~G   45 (70)
                      +|+|.+++.+|+|.|.|.+.-..|
T Consensus        78 ~L~i~~~~~~Dsa~YyCa~~~~~~  101 (118)
T d2ij0c1          78 TLTVTSAHPEDSGFYVCSALAGSG  101 (118)
T ss_dssp             EEEECSCCGGGCEEEEEEEECSSC
T ss_pred             cccccccccccCceEEEEEecCCC
Confidence            699999999999999998865443

>d1fltx_ b.1.1.4 (X:) Second domain of the Flt-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Second domain of the Flt-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.11  E-value=0.0069  Score=33.28  Aligned_cols=24  Identities=17%  Similarity=0.419  Sum_probs=21.0

Q ss_pred             CCEEEEcccCCCCCeeeEEEeEeC
Q psy7035          20 NQSLVLQNVSRARAGHYTCVGSNG   43 (70)
Q Consensus        20 ~~tL~i~~v~~~D~G~Y~C~a~N~   43 (70)
                      ..-.+|.+++..|+|.|.|.|.-.
T Consensus        58 k~Gf~I~~~~~~~~g~y~C~a~~~   81 (95)
T d1fltx_          58 RKGFIISNATYKEIGLLTCEATVN   81 (95)
T ss_dssp             TTEEEESSCCGGGCEEEEEEEEET
T ss_pred             CCCEEEeCCCcccCeEEEEEEEEC
Confidence            445889999999999999999875

>d1w72l1 b.1.1.1 (L:1-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=96.09  E-value=0.0026  Score=35.52  Aligned_cols=22  Identities=18%  Similarity=0.377  Sum_probs=20.1

Q ss_pred             EEEEcccCCCCCeeeEEEeEeC
Q psy7035          22 SLVLQNVSRARAGHYTCVGSNG   43 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N~   43 (70)
                      +|.|.+++.+|+|.|.|.+...
T Consensus        71 ~L~I~~l~~~DsavYyCA~~~~   92 (109)
T d1w72l1          71 TLTISRVEAGDEADYYCQVWDS   92 (109)
T ss_dssp             EEEESSCCGGGCEEEEEEEEET
T ss_pred             ceEEeeeccCCCEEEEEEecCC
Confidence            7999999999999999988754

>d1ac6a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=96.09  E-value=0.0035  Score=34.57  Aligned_cols=23  Identities=26%  Similarity=0.364  Sum_probs=20.3

Q ss_pred             CEEEEcccCCCCCeeeEEEeEeC
Q psy7035          21 QSLVLQNVSRARAGHYTCVGSNG   43 (70)
Q Consensus        21 ~tL~i~~v~~~D~G~Y~C~a~N~   43 (70)
                      -+|+|.+++.+|+|.|.|.+...
T Consensus        72 ~~L~i~~~~~~Dsa~YyCA~~~~   94 (110)
T d1ac6a_          72 FHLQKASVQESDSAVYYCALSGG   94 (110)
T ss_dssp             CCEEEEEECGGGCEEEEEEEEET
T ss_pred             EeeeecCcCcCCCcccceeecCC
Confidence            36999999999999999988753

>d1xaua_ b.1.1.4 (A:) B and T lymphocyte attenuator, Btla {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: B and T lymphocyte attenuator, Btla
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.08  E-value=0.0034  Score=34.97  Aligned_cols=35  Identities=14%  Similarity=0.204  Sum_probs=30.4

Q ss_pred             EEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEE
Q psy7035          22 SLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAY   56 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V   56 (70)
                      .|.|..+-.+|.|.|.|.|.=..|-.+|-+++|.|
T Consensus        69 vLhF~pvl~sDnGsYrCSanf~s~vieSHSvti~V  103 (104)
T d1xaua_          69 VLHFKPIHLSDNGSYSCSTNFNSQVINSHSVTIHV  103 (104)
T ss_dssp             EEEETTCCGGGCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             EEEeeeeeecCCCceEEecCCChhheecceEEEEe
Confidence            58999999999999999998888877777777766

>d1ugna2 b.1.1.4 (A:98-195) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.01  E-value=0.0051  Score=33.53  Aligned_cols=33  Identities=18%  Similarity=0.181  Sum_probs=24.9

Q ss_pred             EEEEcccCCCCCeeeEEEeEeCC----CcccceeEEE
Q psy7035          22 SLVLQNVSRARAGHYTCVGSNGE----GDGQSNAQKT   54 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N~~----G~~~s~~~~L   54 (70)
                      ...|.+|+..|+|.|+|.-....    .+..|+++.|
T Consensus        61 ~F~l~~v~~~~~G~Y~C~y~~~~~p~~wS~pSd~LeL   97 (98)
T d1ugna2          61 IFSVGPVSPSRRWWYRCYAYDSNSPYEWSLPSDLLEL   97 (98)
T ss_dssp             EEEECCCCTTSCEEEEEEEECTTSTTEECCCCCCEEE
T ss_pred             EEEeeecccCCCeEEEEeeEcCCCCCCccCCCCcccc
Confidence            58899999999999999654332    4556777655

>d2cdeb1 b.1.1.1 (B:5-116) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=96.01  E-value=0.0024  Score=35.25  Aligned_cols=25  Identities=24%  Similarity=0.497  Sum_probs=21.4

Q ss_pred             CEEEEcccCCCCCeeeEEEeEeCCC
Q psy7035          21 QSLVLQNVSRARAGHYTCVGSNGEG   45 (70)
Q Consensus        21 ~tL~i~~v~~~D~G~Y~C~a~N~~G   45 (70)
                      .+|.|.+++.+|+|.|.|.+....|
T Consensus        71 ~~L~i~~~~~~Dsa~YyCA~~~~~~   95 (112)
T d2cdeb1          71 FPLTLESARPSHTSQYLCASSENIG   95 (112)
T ss_dssp             CCEEBSSCCTTTCSEEEEEEECSSS
T ss_pred             eEeeeccccccccccEEEEEecCCC
Confidence            4799999999999999998876543

>d2rhea_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=95.95  E-value=0.0025  Score=35.86  Aligned_cols=22  Identities=23%  Similarity=0.461  Sum_probs=19.9

Q ss_pred             CEEEEcccCCCCCeeeEEEeEe
Q psy7035          21 QSLVLQNVSRARAGHYTCVGSN   42 (70)
Q Consensus        21 ~tL~i~~v~~~D~G~Y~C~a~N   42 (70)
                      -+|.|.+++.+|++.|.|.+.-
T Consensus        72 ~~L~I~~v~~~DsA~YyCA~~~   93 (114)
T d2rhea_          72 ASLAISGLESEDEADYYCAAWN   93 (114)
T ss_dssp             EEEEESSCCGGGCEEEEEEEEE
T ss_pred             eeeEecccCcccCceEEEeecC
Confidence            4799999999999999998764

>d2bnub1 b.1.1.1 (B:2-113) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=95.93  E-value=0.0022  Score=35.46  Aligned_cols=22  Identities=23%  Similarity=0.356  Sum_probs=19.6

Q ss_pred             CEEEEcccCCCCCeeeEEEeEe
Q psy7035          21 QSLVLQNVSRARAGHYTCVGSN   42 (70)
Q Consensus        21 ~tL~i~~v~~~D~G~Y~C~a~N   42 (70)
                      -+|.|.++..+|+|.|.|.+..
T Consensus        72 ~~L~I~~~~~~DsavYyCA~~~   93 (112)
T d2bnub1          72 FPLRLLSAAPSQTSVYFCASSY   93 (112)
T ss_dssp             CCEEESSCCGGGCEEEEEEEEC
T ss_pred             EEEEECCCCHHHCEEEEEeecC
Confidence            4799999999999999997764

>d1f3rb2 b.1.1.1 (B:139-257) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.91  E-value=0.0023  Score=36.27  Aligned_cols=21  Identities=19%  Similarity=0.436  Sum_probs=19.3

Q ss_pred             EEEEcccCCCCCeeeEEEeEe
Q psy7035          22 SLVLQNVSRARAGHYTCVGSN   42 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N   42 (70)
                      +|.|.+++.+|+|.|.|.+..
T Consensus        72 ~L~I~~~~~~DsavYyCa~~~   92 (119)
T d1f3rb2          72 TLTISSLQPEDVATYFCYQYN   92 (119)
T ss_dssp             EEEECSCCGGGCSEEEEEEES
T ss_pred             EEEcccCccCCCeEEEeeccC
Confidence            699999999999999997764

>d1nfdb1 b.1.1.1 (B:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=95.90  E-value=0.004  Score=34.51  Aligned_cols=22  Identities=14%  Similarity=0.291  Sum_probs=19.6

Q ss_pred             EEEEcccCCCCCeeeEEEeEeC
Q psy7035          22 SLVLQNVSRARAGHYTCVGSNG   43 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N~   43 (70)
                      +|+|.+++.+|+|.|.|.+...
T Consensus        75 ~L~I~~~~~~Dsa~YyCa~~~~   96 (113)
T d1nfdb1          75 EMNMSALELEDSAMYFCASSLR   96 (113)
T ss_dssp             EEECCSCCGGGCEEECEEEESS
T ss_pred             EEEecccCcCCceeEEEEeecC
Confidence            7999999999999999987643

>d1nfde1 b.1.1.1 (E:2-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=95.85  E-value=0.0025  Score=35.38  Aligned_cols=22  Identities=18%  Similarity=0.424  Sum_probs=19.8

Q ss_pred             CEEEEcccCCCCCeeeEEEeEe
Q psy7035          21 QSLVLQNVSRARAGHYTCVGSN   42 (70)
Q Consensus        21 ~tL~i~~v~~~D~G~Y~C~a~N   42 (70)
                      .+|.|.+++.+|+|.|.|.+.-
T Consensus        69 ~~L~I~~l~~~Dsa~YyCA~~~   90 (108)
T d1nfde1          69 ATLTISGAQPEDEAAYYCLSSY   90 (108)
T ss_dssp             EEEEETTCCGGGCSEEEEEEEE
T ss_pred             eeeeEcCccccCCceEEEEeec
Confidence            3899999999999999998764

>d1ypzf1 b.1.1.1 (F:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=95.81  E-value=0.0023  Score=36.20  Aligned_cols=20  Identities=15%  Similarity=0.292  Sum_probs=18.3

Q ss_pred             EEEEcccCCCCCeeeEEEeE
Q psy7035          22 SLVLQNVSRARAGHYTCVGS   41 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~   41 (70)
                      +|+|.+++.+|+|.|.|.+.
T Consensus        80 ~L~I~~l~~~Dsa~YyCA~~   99 (120)
T d1ypzf1          80 ILTIYSLEEEDEAIYYCSYG   99 (120)
T ss_dssp             EEEECSCCGGGCSEEEEEEC
T ss_pred             cccccccccccceeEEEEEc
Confidence            59999999999999999765

>d1hxma1 b.1.1.1 (A:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=95.56  E-value=0.0043  Score=34.91  Aligned_cols=22  Identities=23%  Similarity=0.314  Sum_probs=19.6

Q ss_pred             EEEEcccCCCCCeeeEEEeEeC
Q psy7035          22 SLVLQNVSRARAGHYTCVGSNG   43 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N~   43 (70)
                      +|.|.+++.+|+|.|.|.....
T Consensus        76 ~L~i~~~~~~Dsa~YyCA~~~~   97 (120)
T d1hxma1          76 VLKILAPSERDEGSYYCACDTL   97 (120)
T ss_dssp             EEEESSCCGGGCEEEEEEEECC
T ss_pred             ecccccccccCCceeecCcccC
Confidence            8999999999999999976553

>d1hxmb1 b.1.1.1 (B:1-123) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=95.41  E-value=0.01  Score=33.45  Aligned_cols=22  Identities=23%  Similarity=0.451  Sum_probs=19.5

Q ss_pred             EEEEcccCCCCCeeeEEEeEeC
Q psy7035          22 SLVLQNVSRARAGHYTCVGSNG   43 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N~   43 (70)
                      +|.|.+++.+|+|.|.|.+...
T Consensus        81 ~L~i~~l~~~Dsa~YyCA~~~~  102 (123)
T d1hxmb1          81 TLTIHNVEKQDIATYYCALWEA  102 (123)
T ss_dssp             EEEECSCCGGGCEEEEEEEEEE
T ss_pred             eecccccccccCcEEEEeeeCC
Confidence            5999999999999999987653

>d1xiwa_ b.1.1.4 (A:) CD3 epsilon chain ectodomain fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 epsilon chain ectodomain fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.19  E-value=0.017  Score=31.79  Aligned_cols=26  Identities=23%  Similarity=0.480  Sum_probs=21.5

Q ss_pred             ecCCEEEEcccCC-CCCeeeEEEeEeC
Q psy7035          18 VSNQSLVLQNVSR-ARAGHYTCVGSNG   43 (70)
Q Consensus        18 ~~~~tL~i~~v~~-~D~G~Y~C~a~N~   43 (70)
                      ..+..|.+.+.+. +++|.|+|.+...
T Consensus        45 ~~~~~l~L~dfSe~e~sGyY~C~~~~~   71 (91)
T d1xiwa_          45 SDEDHLSLKEFSELEQSGYYVCYPRGS   71 (91)
T ss_dssp             EETTEEEETTCCHHHHCEEEEEEETTS
T ss_pred             cccceEEecccCccccCceEEEEcCCC
Confidence            3456899999988 8999999998654

>d3b5ha2 b.1.1.4 (A:23-102) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.59  E-value=0.012  Score=31.62  Aligned_cols=35  Identities=20%  Similarity=0.312  Sum_probs=22.1

Q ss_pred             cccCeEcCcCccceEEecCCEEEEcccCCCCCeeeEEEeE
Q psy7035           2 SFSNVQLYNNISAGVIVSNQSLVLQNVSRARAGHYTCVGS   41 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~~~~~tL~i~~v~~~D~G~Y~C~a~   41 (70)
                      +|||+.|..+....   ..-...|..  .+|+|.|+|.--
T Consensus        34 ~K~gkvl~ed~~~~---~~tey~V~~--~D~SGeY~CVFl   68 (80)
T d3b5ha2          34 LKGGVVLKEDALPG---QKTEFKVDS--DDQWGEYSCVFL   68 (80)
T ss_dssp             ESSSEEEECTTCCC---SEEEEEECG--GGCCEEEEEEEE
T ss_pred             eeCCEEccccCCCC---CceEEEEec--CCCCceEEEEEc
Confidence            57888887643211   112455554  789999999844

>d3d85d1 b.1.1.4 (D:1-87) The p40 domain of interleukin-12 (IL-12 beta chain), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: The p40 domain of interleukin-12 (IL-12 beta chain), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.32  E-value=0.022  Score=31.07  Aligned_cols=34  Identities=29%  Similarity=0.377  Sum_probs=21.8

Q ss_pred             ecCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEE
Q psy7035          18 VSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKT   54 (70)
Q Consensus        18 ~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L   54 (70)
                      ..+.+|+++==.-.|+|+|+|. .  .|+.-+-++.|
T Consensus        48 ~~GntltV~VkE~~~aGnYTCh-k--~g~~Lnht~lL   81 (87)
T d3d85d1          48 GSGKTLTIQVKEFGDAGQYTCH-K--GGEVLSHSLLL   81 (87)
T ss_dssp             EESSEEEEEECSGGGCEEEEEE-E--TTEEEEEEEEE
T ss_pred             cCCCEEEEEEEeccCCcceeEe-C--CCcEeeeEEEE
Confidence            3556777763333699999997 3  37766655433

>d1dn0b1 b.1.1.1 (B:1-120) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=94.06  E-value=0.016  Score=33.20  Aligned_cols=20  Identities=35%  Similarity=0.532  Sum_probs=17.6

Q ss_pred             EEEEcccCCCCCeeeEEEeEe
Q psy7035          22 SLVLQNVSRARAGHYTCVGSN   42 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N   42 (70)
                      .|.|.+++.+|++.|.| |+-
T Consensus        79 ~L~i~~l~~eDtA~YYC-Ar~   98 (120)
T d1dn0b1          79 SLKLSSVTAADTAVYYC-ARP   98 (120)
T ss_dssp             EEEECSCCGGGCEEEEE-EEC
T ss_pred             cccccccccccccEEEE-Eee
Confidence            59999999999999999 443

>d1eapb1 b.1.1.1 (B:1-124) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=93.96  E-value=0.024  Score=32.45  Aligned_cols=18  Identities=17%  Similarity=0.423  Sum_probs=16.8

Q ss_pred             EEEEcccCCCCCeeeEEE
Q psy7035          22 SLVLQNVSRARAGHYTCV   39 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~   39 (70)
                      .|.|.+++.+|++.|.|.
T Consensus        80 ~L~~~sL~~eDTAvYYCA   97 (119)
T d1eapb1          80 YMQLNSLTSEDSAVYFCK   97 (119)
T ss_dssp             EEEECSCCGGGCEEEEEE
T ss_pred             EeeeecccCCcceEEEEE
Confidence            699999999999999994

>d1lk2b_ b.1.1.2 (B:) beta2-microglobulin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.82  E-value=0.086  Score=28.20  Aligned_cols=42  Identities=10%  Similarity=0.105  Sum_probs=24.1

Q ss_pred             cccCeEcCcCccceEE-ecCCE---EEEcccCCCCCeeeEEEeEeC
Q psy7035           2 SFSNVQLYNNISAGVI-VSNQS---LVLQNVSRARAGHYTCVGSNG   43 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~-~~~~t---L~i~~v~~~D~G~Y~C~a~N~   43 (70)
                      ++||+++......... -.+++   .....+..++.+.|+|.+...
T Consensus        40 ~~~g~~~~~~~~~~~~~~~dgtf~~~s~l~v~~~~~~~ytC~V~H~   85 (99)
T d1lk2b_          40 LKNGKKIPKVEMSDMSFSKDWSFYILAHTEFTPTETDTYACRVKHD   85 (99)
T ss_dssp             EETTEECTTCEEEEEEECTTCCEEEEEEEEECCCSSCCEEEEEECT
T ss_pred             eeCCeecCCcEECceeECCCCCEEEEEEeEecCcCCCEEEEEEEeC
Confidence            4677777543222222 23342   223334667778999999995

>d2agjh1 b.1.1.1 (H:1-120) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=93.67  E-value=0.028  Score=32.05  Aligned_cols=21  Identities=24%  Similarity=0.504  Sum_probs=18.4

Q ss_pred             EEEEcccCCCCCeeeEEEeEe
Q psy7035          22 SLVLQNVSRARAGHYTCVGSN   42 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N   42 (70)
                      +|.|.+++.+|++.|.|....
T Consensus        81 ~L~i~~l~~eDsAvYyCAr~~  101 (120)
T d2agjh1          81 VLTLTNLDPVDTATYYCARTS  101 (120)
T ss_dssp             EEEEESCCGGGCEEEEEEEEC
T ss_pred             eeeEEeeeeccceEEeeEecC
Confidence            699999999999999996443

>d1oari_ b.1.1.1 (I:) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.13  E-value=0.045  Score=30.38  Aligned_cols=24  Identities=17%  Similarity=0.256  Sum_probs=17.5

Q ss_pred             EEEEcccCCCCCeeeEEEeEeCCC
Q psy7035          22 SLVLQNVSRARAGHYTCVGSNGEG   45 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N~~G   45 (70)
                      .|.|.+++.+|++.|.|......+
T Consensus        67 ~L~~~sL~~eDTAvYYCAr~~~~~   90 (103)
T d1oari_          67 YMQLSSLTSEDSAVYYCARMWYYG   90 (103)
T ss_dssp             EEEECCC---CCSEEEEEEEECSS
T ss_pred             EeeeeeccccccEEEEeEEECCCC
Confidence            699999999999999997665543

>d1i3ua_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=92.90  E-value=0.037  Score=31.83  Aligned_cols=22  Identities=14%  Similarity=0.382  Sum_probs=19.3

Q ss_pred             EEEEcccCCCCCeeeEEEeEeC
Q psy7035          22 SLVLQNVSRARAGHYTCVGSNG   43 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N~   43 (70)
                      .|.|.+++.+|++.|.|.+.-.
T Consensus        85 ~L~i~~l~~eDtAvYYCAr~~~  106 (127)
T d1i3ua_          85 NLQMNSLKPEDTAVYYCAAKTT  106 (127)
T ss_dssp             EEEECSCCGGGCEEEEEEEESC
T ss_pred             EEeeecccccceeEEEEEEEee
Confidence            5999999999999999986543

>d1k5nb_ b.1.1.2 (B:) beta2-microglobulin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.73  E-value=0.11  Score=28.05  Aligned_cols=42  Identities=10%  Similarity=0.100  Sum_probs=25.1

Q ss_pred             cccCeEcCcCccce-EEecCCE---EEEcccCCCCCeeeEEEeEeC
Q psy7035           2 SFSNVQLYNNISAG-VIVSNQS---LVLQNVSRARAGHYTCVGSNG   43 (70)
Q Consensus         2 ~~ng~~l~~~~~~~-~~~~~~t---L~i~~v~~~D~G~Y~C~a~N~   43 (70)
                      ++||+++....... ..-.+|+   .....+.++|.+.|+|.+...
T Consensus        41 ~~ng~~v~~~~~~~~~~~~dgty~~~s~l~v~~~~~~~ytC~V~H~   86 (100)
T d1k5nb_          41 LKNGERIEKVEHSDLSFSKDWSFYLLYYTEFTPTEKDEYACRVNHV   86 (100)
T ss_dssp             EETTEECTTCEECCCEECTTSCEEEEEEEEECCCSSCCEEEEEECT
T ss_pred             EECCEecCCccccceecCCCCcEEEEEEeEECCCCCCEEEEEEEeC
Confidence            46888875322111 2224443   333345677888999999995

>d1etzb1 b.1.1.1 (B:1-126) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]

Probab=92.41  E-value=0.066  Score=30.63  Aligned_cols=21  Identities=19%  Similarity=0.428  Sum_probs=18.5

Q ss_pred             EEEEcccCCCCCeeeEEEeEe
Q psy7035          22 SLVLQNVSRARAGHYTCVGSN   42 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N   42 (70)
                      +|.|.+++.+|+..|.|....
T Consensus        81 ~L~i~~l~~eDtAvYyCAr~~  101 (126)
T d1etzb1          81 FLKITSVDTSDTATYHCARRT  101 (126)
T ss_dssp             EEEECSCCGGGCEEEEEEEEE
T ss_pred             EcceecccccccceEEEEEec
Confidence            599999999999999997543

>d1nlbh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=92.28  E-value=0.036  Score=31.64  Aligned_cols=21  Identities=14%  Similarity=0.281  Sum_probs=18.1

Q ss_pred             EEEEcccCCCCCeeeEEEeEeC
Q psy7035          22 SLVLQNVSRARAGHYTCVGSNG   43 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N~   43 (70)
                      .|.|.+++.+|++.|.| |+..
T Consensus        80 yL~~~~L~~eDtAvYYC-Ar~~  100 (118)
T d1nlbh1          80 YLQINSLKNEDTATYFC-ARFL  100 (118)
T ss_dssp             EEEECSCCGGGCEEEEE-EEEC
T ss_pred             EeeeeecccCcceEEEE-eeeC
Confidence            59999999999999999 4543

>d1iqdb1 b.1.1.1 (B:1-114) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=92.21  E-value=0.097  Score=29.67  Aligned_cols=22  Identities=14%  Similarity=0.292  Sum_probs=19.3

Q ss_pred             EEEEcccCCCCCeeeEEEeEeC
Q psy7035          22 SLVLQNVSRARAGHYTCVGSNG   43 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N~   43 (70)
                      .|.|.+++.+|++.|.|.....
T Consensus        80 ~L~i~~L~~eDtAvYYCA~~~~  101 (117)
T d1iqdb1          80 YMELSSLRSDDTAVYYCAVPDP  101 (117)
T ss_dssp             EEEECSCCGGGCEEEEEEECSS
T ss_pred             EEeecccCcCcceEEEEeEcCC
Confidence            5999999999999999976554

>d1qnzh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=92.21  E-value=0.081  Score=29.98  Aligned_cols=19  Identities=16%  Similarity=0.314  Sum_probs=17.2

Q ss_pred             EEEEcccCCCCCeeeEEEe
Q psy7035          22 SLVLQNVSRARAGHYTCVG   40 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a   40 (70)
                      .|.|.+++.+|++.|.|..
T Consensus        80 ~L~i~~L~~eDsAvYYCA~   98 (119)
T d1qnzh_          80 YLEFSRLTSDDSAVYYCAI   98 (119)
T ss_dssp             EEEEEEECGGGCEEEEEEE
T ss_pred             eeeecccCccceeEEEEEE
Confidence            5999999999999999954

>d1kxvc_ b.1.1.1 (C:) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=92.21  E-value=0.068  Score=30.39  Aligned_cols=23  Identities=17%  Similarity=0.219  Sum_probs=19.6

Q ss_pred             EEEEcccCCCCCeeeEEEeEeCC
Q psy7035          22 SLVLQNVSRARAGHYTCVGSNGE   44 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N~~   44 (70)
                      +|.|.+++.+|+..|.|.+.-..
T Consensus        78 ~L~i~~L~~eDtA~YYCAr~~~~  100 (119)
T d1kxvc_          78 YLQMDSLKPDDTAMYYCKPSLRY  100 (119)
T ss_dssp             EEEECSCCGGGCEEEEEEEEESS
T ss_pred             ecccccCCcCCcceEeeeecccc
Confidence            69999999999999999665443

>d1f3dh1 b.1.1.1 (H:1-121) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=92.02  E-value=0.041  Score=31.17  Aligned_cols=18  Identities=17%  Similarity=0.381  Sum_probs=16.8

Q ss_pred             EEEEcccCCCCCeeeEEE
Q psy7035          22 SLVLQNVSRARAGHYTCV   39 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~   39 (70)
                      .|.|.+++.+|++.|.|.
T Consensus        80 ~L~i~~l~~eDtAvYYCA   97 (115)
T d1f3dh1          80 FMHLNSLTFEDSAVYYCA   97 (115)
T ss_dssp             EEEECSCCGGGCEEEEEE
T ss_pred             EeeeeecCcCCcEEEEEe
Confidence            599999999999999994

>d2b1hh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=92.00  E-value=0.083  Score=30.24  Aligned_cols=19  Identities=16%  Similarity=0.356  Sum_probs=17.1

Q ss_pred             EEEEcccCCCCCeeeEEEe
Q psy7035          22 SLVLQNVSRARAGHYTCVG   40 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a   40 (70)
                      .|.|.+++.+|+..|.|..
T Consensus        80 yL~~~~L~~eDTA~YYCAR   98 (124)
T d2b1hh1          80 HLQWSSLKPSDTALYYCAR   98 (124)
T ss_dssp             EEEESSCCGGGCEEEEEEE
T ss_pred             EEeeeccccccceEEEEee
Confidence            6999999999999999943

>d1rz7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=91.97  E-value=0.051  Score=30.96  Aligned_cols=20  Identities=20%  Similarity=0.401  Sum_probs=17.8

Q ss_pred             EEEEcccCCCCCeeeEEEeE
Q psy7035          22 SLVLQNVSRARAGHYTCVGS   41 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~   41 (70)
                      .|.|.+++.+|++.|.|.+.
T Consensus        80 yLqm~sL~~eDTAvYYCAr~   99 (119)
T d1rz7h1          80 YLELSSLRSEDTAVYYCAAD   99 (119)
T ss_dssp             EEEECSCCGGGCEEEEEEEC
T ss_pred             EeeeeccCcccceEEEEeec
Confidence            59999999999999999553

>d1jbja1 b.1.1.4 (A:101-186) CD3 gamma chain ectodomain fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 gamma chain ectodomain fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.90  E-value=0.19  Score=27.06  Aligned_cols=33  Identities=21%  Similarity=0.334  Sum_probs=23.8

Q ss_pred             CEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeC
Q psy7035          21 QSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIG   59 (70)
Q Consensus        21 ~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~   59 (70)
                      .+|-+-+..+.=.|.|+|.+...    .|  -.|.|+|.
T Consensus        53 ktlnLG~~~~DPRGiY~C~g~~~----~s--~~LQVYYR   85 (86)
T d1jbja1          53 NTWNLGNNAKDPRGTYQCQGAKE----TS--NPLQVYYR   85 (86)
T ss_dssp             SCCEEEETTSCCEEEEEEEESSC----EE--EEEEEECC
T ss_pred             ceeecCCcccCCCcceEcCCCcc----cC--ccEEEEEe
Confidence            46777777888899999976542    23  35888874

>d2fbjh1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=91.87  E-value=0.08  Score=30.08  Aligned_cols=23  Identities=17%  Similarity=0.222  Sum_probs=19.7

Q ss_pred             EEEEcccCCCCCeeeEEEeEeCC
Q psy7035          22 SLVLQNVSRARAGHYTCVGSNGE   44 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N~~   44 (70)
                      .|.|.+++.+|++.|.|......
T Consensus        80 ~L~~~sL~~eDtAvYYCAr~~~~  102 (118)
T d2fbjh1          80 YLQMSKVRSEDTALYYCARLHYY  102 (118)
T ss_dssp             EEEECSCCGGGCEEEEEEEEETT
T ss_pred             eccccccCCCcceEEEeeEecCC
Confidence            59999999999999999766543

>d1sjva_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=91.87  E-value=0.047  Score=30.59  Aligned_cols=19  Identities=16%  Similarity=0.347  Sum_probs=17.3

Q ss_pred             EEEEcccCCCCCeeeEEEe
Q psy7035          22 SLVLQNVSRARAGHYTCVG   40 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a   40 (70)
                      .|.|.+++.+|++.|.|..
T Consensus        72 ~L~i~~l~~eDtAvYyCA~   90 (107)
T d1sjva_          72 YLEMNSLEPEDTAVYYCYT   90 (107)
T ss_dssp             EEEECSCCGGGCSEEEEEE
T ss_pred             EEeecCCCcccceeeeEec
Confidence            5999999999999999954

>d1jpth1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=91.82  E-value=0.044  Score=31.22  Aligned_cols=21  Identities=14%  Similarity=0.355  Sum_probs=18.2

Q ss_pred             EEEEcccCCCCCeeeEEEeEe
Q psy7035          22 SLVLQNVSRARAGHYTCVGSN   42 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N   42 (70)
                      .|.|.+++.+|++.|.|....
T Consensus        80 yL~m~~L~~eDTAvYYCAr~~  100 (117)
T d1jpth1          80 YLQMNSLRAEDTAVYYCARDT  100 (117)
T ss_dssp             EEEECSCCGGGCEEEEEEEEC
T ss_pred             EecccccCCCCceEEEEeecC
Confidence            589999999999999996544

>d1ai1h1 b.1.1.1 (H:1-112) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]

Probab=91.74  E-value=0.17  Score=28.66  Aligned_cols=21  Identities=24%  Similarity=0.407  Sum_probs=18.3

Q ss_pred             EEEEcccCCCCCeeeEEEeEe
Q psy7035          22 SLVLQNVSRARAGHYTCVGSN   42 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N   42 (70)
                      .|.|.+++.+|++.|.|....
T Consensus        81 ~L~~~sL~~eDtAvYYCAr~~  101 (120)
T d1ai1h1          81 FIQLISVTNEDTAMYYCSREN  101 (120)
T ss_dssp             EEEESSCCGGGCEEEEEEEEE
T ss_pred             ecceeeeeccceeEEEEEecC
Confidence            599999999999999996543

>d1pg7x1 b.1.1.1 (X:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=91.73  E-value=0.076  Score=30.17  Aligned_cols=21  Identities=14%  Similarity=0.363  Sum_probs=18.6

Q ss_pred             EEEEcccCCCCCeeeEEEeEe
Q psy7035          22 SLVLQNVSRARAGHYTCVGSN   42 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N   42 (70)
                      .|.|.+++.+|++.|.|....
T Consensus        80 ~L~i~~l~~eDtA~YYCAr~~  100 (120)
T d1pg7x1          80 YIELVRLTSNDSAVYYCARED  100 (120)
T ss_dssp             EEEECSCCGGGCEEEEEEEEC
T ss_pred             EccccccCCCcceEEEeeecC
Confidence            599999999999999997654

>d7fabh1 b.1.1.1 (H:1-116) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=91.67  E-value=0.077  Score=30.06  Aligned_cols=21  Identities=33%  Similarity=0.464  Sum_probs=18.4

Q ss_pred             EEEEcccCCCCCeeeEEEeEe
Q psy7035          22 SLVLQNVSRARAGHYTCVGSN   42 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N   42 (70)
                      .|.|.+++.+|++.|.|...-
T Consensus        79 ~L~i~~L~~eDtAvYyCAr~~   99 (116)
T d7fabh1          79 SLRLSSVTAADTAVYYCARNL   99 (116)
T ss_dssp             EEEECSCCGGGCEEEEEEEEC
T ss_pred             hccccccccccceEEEeeeec
Confidence            699999999999999996543

>d2ck0h1 b.1.1.1 (H:1-106) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=91.66  E-value=0.047  Score=30.70  Aligned_cols=20  Identities=30%  Similarity=0.576  Sum_probs=17.8

Q ss_pred             EEEEcccCCCCCeeeEEEeE
Q psy7035          22 SLVLQNVSRARAGHYTCVGS   41 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~   41 (70)
                      .|.|.+++.+|++.|.|...
T Consensus        82 ~L~i~sL~~eDTAvYYCAr~  101 (109)
T d2ck0h1          82 YLQMNNLKTEDTGIYYCVRG  101 (109)
T ss_dssp             EEEECSCCGGGCEEEEEEEE
T ss_pred             EecccCCCHhHCEEEEEEEc
Confidence            59999999999999999743

>d1mfah1 b.1.1.1 (H:251-367) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=91.51  E-value=0.05  Score=30.94  Aligned_cols=19  Identities=16%  Similarity=0.403  Sum_probs=17.2

Q ss_pred             EEEEcccCCCCCeeeEEEe
Q psy7035          22 SLVLQNVSRARAGHYTCVG   40 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a   40 (70)
                      .|.|.+++.+|++.|.|..
T Consensus        80 ~L~i~~L~~eDtAvYYCAr   98 (117)
T d1mfah1          80 YMELSSLTSEDSAVYYCTR   98 (117)
T ss_dssp             EEEECSCCGGGCEEEEEEE
T ss_pred             EeeecccCCCcceEEEEec
Confidence            5999999999999999953

>d1a2yb_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 5 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 5 [TaxId: 10090]

Probab=91.43  E-value=0.051  Score=30.85  Aligned_cols=21  Identities=14%  Similarity=0.373  Sum_probs=18.5

Q ss_pred             EEEEcccCCCCCeeeEEEeEe
Q psy7035          22 SLVLQNVSRARAGHYTCVGSN   42 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N   42 (70)
                      .|.|.+++.+|++.|.|....
T Consensus        79 ~L~~~~l~~eDTAvYYCAr~~   99 (116)
T d1a2yb_          79 FLKMNSLHTDDTARYYCARER   99 (116)
T ss_dssp             EEEECSCCGGGCEEEEEEEES
T ss_pred             EcceeeeeeccceEEEEEEeC
Confidence            599999999999999997543

>d1j05b_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=91.42  E-value=0.064  Score=30.57  Aligned_cols=21  Identities=19%  Similarity=0.333  Sum_probs=18.3

Q ss_pred             EEEEcccCCCCCeeeEEEeEe
Q psy7035          22 SLVLQNVSRARAGHYTCVGSN   42 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N   42 (70)
                      .|.|.+++.+|++.|.|....
T Consensus        80 ~L~i~~L~~eDtAvYYCAr~~  100 (121)
T d1j05b_          80 YLQLTSLTSEDTAVYYCAPFG  100 (121)
T ss_dssp             EEEECSCCGGGCEEEEEEEEB
T ss_pred             eecccccCcCcceEEEeEeec
Confidence            499999999999999996543

>d1sy6a1 b.1.1.4 (A:1-81) CD3 gamma chain ectodomain fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 gamma chain ectodomain fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.40  E-value=0.15  Score=27.24  Aligned_cols=35  Identities=20%  Similarity=0.319  Sum_probs=25.2

Q ss_pred             cCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeC
Q psy7035          19 SNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIG   59 (70)
Q Consensus        19 ~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~   59 (70)
                      .+.+|-+-+..+.=.|.|.|.+.+.    .|.  .|.|+|.
T Consensus        46 ~~ktlnLG~~~~DPRG~Y~C~~~~~----~s~--~LQVyYR   80 (81)
T d1sy6a1          46 DKKKWNLGSNAKDPRGMYQCKGSQN----KSK--PLQVYYR   80 (81)
T ss_dssp             SCCCEEEEEGGGCCEEEEEEESSSS----CCC--CEEEEEE
T ss_pred             CcceeecCCcccCCCcceEcCCCCc----CCe--eEEEEEe
Confidence            3567888888889999999977543    233  4777764

>d1tjgh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=91.16  E-value=0.078  Score=30.58  Aligned_cols=21  Identities=29%  Similarity=0.488  Sum_probs=18.4

Q ss_pred             EEEEcccCCCCCeeeEEEeEe
Q psy7035          22 SLVLQNVSRARAGHYTCVGSN   42 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N   42 (70)
                      .|.|.+++.+|++.|.|....
T Consensus        81 ~L~i~~l~~eDtAvYYCAr~~  101 (132)
T d1tjgh1          81 VLVMTRVSPVDTATYFCAHRR  101 (132)
T ss_dssp             EEEECSCCGGGCEEEEEEEEC
T ss_pred             EcccccCCcccceEEEEEEec
Confidence            499999999999999997553

>d1c5db1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=91.03  E-value=0.059  Score=30.65  Aligned_cols=20  Identities=15%  Similarity=0.345  Sum_probs=17.7

Q ss_pred             EEEEcccCCCCCeeeEEEeE
Q psy7035          22 SLVLQNVSRARAGHYTCVGS   41 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~   41 (70)
                      .|.|.+++.+|++.|.|...
T Consensus        79 ~L~~~sL~~eDtAvYYCAr~   98 (117)
T d1c5db1          79 FLKMNSLQTEDTAIYFCTRE   98 (117)
T ss_dssp             EEEECSCCGGGCEEEEEEEC
T ss_pred             eccccccccCcceEEEEecc
Confidence            59999999999999999543

>d1zvya1 b.1.1.1 (A:2-125) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=91.00  E-value=0.074  Score=30.44  Aligned_cols=22  Identities=23%  Similarity=0.400  Sum_probs=19.1

Q ss_pred             EEEEcccCCCCCeeeEEEeEeC
Q psy7035          22 SLVLQNVSRARAGHYTCVGSNG   43 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N~   43 (70)
                      .|.|++++.+|++.|.|.+...
T Consensus        79 yLq~~sL~~eDtAvYYCAr~~~  100 (124)
T d1zvya1          79 YLRMDSVKSEDTAIYTCGATRK  100 (124)
T ss_dssp             EEEECSCCGGGCEEEEEEECSS
T ss_pred             eceeccccCCcceEEEEeeccc
Confidence            5999999999999999977543

>d1fo0b_ b.1.1.1 (B:) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=90.99  E-value=0.11  Score=28.05  Aligned_cols=24  Identities=25%  Similarity=0.344  Sum_probs=20.6

Q ss_pred             ecCCEEEEcccCCCCCeeeEEEeE
Q psy7035          18 VSNQSLVLQNVSRARAGHYTCVGS   41 (70)
Q Consensus        18 ~~~~tL~i~~v~~~D~G~Y~C~a~   41 (70)
                      ..+.+|.|..++.+|++.|.|...
T Consensus        71 ~~~~~l~l~~~~~~dsa~Y~Ca~~   94 (112)
T d1fo0b_          71 VTDTELRLQVANMSQGRTLYCTCS   94 (112)
T ss_dssp             EETTEEEEEEESCCSCEEEEEEEE
T ss_pred             ccccEEEEecCCccCCccEEEEEe
Confidence            355789999999999999999864

>d1rihh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=90.98  E-value=0.06  Score=30.85  Aligned_cols=21  Identities=14%  Similarity=0.390  Sum_probs=18.4

Q ss_pred             EEEEcccCCCCCeeeEEEeEe
Q psy7035          22 SLVLQNVSRARAGHYTCVGSN   42 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N   42 (70)
                      .|.|.+++.+|++.|.|....
T Consensus        80 yL~l~sL~~eDtAvYYCAR~~  100 (125)
T d1rihh1          80 FMYLNSLTSEDSAVYYCARES  100 (125)
T ss_dssp             EEEECSCCGGGCEEEEEEEEC
T ss_pred             eeeeeccCcccceEEEEeeeC
Confidence            599999999999999997553

>d1ol0a_ b.1.1.1 (A:) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=90.95  E-value=0.082  Score=30.13  Aligned_cols=20  Identities=15%  Similarity=0.360  Sum_probs=18.0

Q ss_pred             EEEEcccCCCCCeeeEEEeE
Q psy7035          22 SLVLQNVSRARAGHYTCVGS   41 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~   41 (70)
                      .|.|.+++.+|++.|.|...
T Consensus        80 ~L~i~sL~~eDtAvYYCAr~   99 (121)
T d1ol0a_          80 YLQMNSLRAEDTAVYYCARE   99 (121)
T ss_dssp             EEEECSCCGGGCEEEEEEEC
T ss_pred             EeeeeecccccceEEEEEEe
Confidence            59999999999999999654

>d1jnhb1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=90.85  E-value=0.079  Score=30.09  Aligned_cols=19  Identities=21%  Similarity=0.482  Sum_probs=17.3

Q ss_pred             EEEEcccCCCCCeeeEEEe
Q psy7035          22 SLVLQNVSRARAGHYTCVG   40 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a   40 (70)
                      .|.|.+++.+|++.|.|..
T Consensus        80 yLq~~~L~~eDTAvYYCAr   98 (117)
T d1jnhb1          80 YLQLNSLTSEDSAVYSCSR   98 (117)
T ss_dssp             EEEECSCCGGGCEEEEEEE
T ss_pred             eecccccCCCcceEEEEee
Confidence            5999999999999999954

>d1bz7b1 b.1.1.1 (B:1-122) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=90.76  E-value=0.11  Score=29.62  Aligned_cols=21  Identities=14%  Similarity=0.328  Sum_probs=18.4

Q ss_pred             EEEEcccCCCCCeeeEEEeEe
Q psy7035          22 SLVLQNVSRARAGHYTCVGSN   42 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N   42 (70)
                      .|.|.+++.+|++.|.|...+
T Consensus        80 yL~m~sL~~eDTAvYYCAr~~  100 (122)
T d1bz7b1          80 FLQMTSLRSEDTAIYYCTRGG  100 (122)
T ss_dssp             EEEECSCCGGGCEEEEEEEEC
T ss_pred             EeeeeeecccCceEEEeecCC
Confidence            699999999999999996554

>d1jbja2 b.1.1.4 (A:1-100) CD3 epsilon chain ectodomain fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 epsilon chain ectodomain fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.76  E-value=0.12  Score=28.64  Aligned_cols=22  Identities=36%  Similarity=0.647  Sum_probs=17.8

Q ss_pred             CEEEEcccCC-CCCeeeEEEeEe
Q psy7035          21 QSLVLQNVSR-ARAGHYTCVGSN   42 (70)
Q Consensus        21 ~tL~i~~v~~-~D~G~Y~C~a~N   42 (70)
                      ..|++.+.+. +|+|.|.|...+
T Consensus        44 ~~L~L~~FSE~e~SGyY~C~~~~   66 (100)
T d1jbja2          44 KHLVLQDFSEVEDSGYYVCYTPA   66 (100)
T ss_dssp             SEEEEESCCTTTSCEEEEEECSS
T ss_pred             cEEEEccccccccCcceEEecCC
Confidence            3788999877 799999996444

>d1r0ah1 b.1.1.1 (H:1-123) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]

Probab=90.72  E-value=0.092  Score=29.96  Aligned_cols=20  Identities=30%  Similarity=0.408  Sum_probs=17.7

Q ss_pred             EEEEcccCCCCCeeeEEEeE
Q psy7035          22 SLVLQNVSRARAGHYTCVGS   41 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~   41 (70)
                      .|.|.+++.+|+..|.|...
T Consensus        81 ~L~i~sl~~eDsAvYyCAr~  100 (123)
T d1r0ah1          81 FLNMMTVETADTAIYYCAQS  100 (123)
T ss_dssp             EEEECSCCGGGCEEEEEEEE
T ss_pred             EcceeecccccceEEeeccc
Confidence            49999999999999999643

>d1mqkh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=90.69  E-value=0.093  Score=30.02  Aligned_cols=21  Identities=19%  Similarity=0.417  Sum_probs=18.5

Q ss_pred             EEEEcccCCCCCeeeEEEeEe
Q psy7035          22 SLVLQNVSRARAGHYTCVGSN   42 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N   42 (70)
                      .|.|.+++.+|++.|.|....
T Consensus        80 ~L~i~~L~~eDtAvYYCAr~~  100 (123)
T d1mqkh_          80 YLQMSSLKSEDTAMYYCVRHE  100 (123)
T ss_dssp             EEEECSCCGGGCEEEEEEEEE
T ss_pred             ccceeeeccCcccceeEEecC
Confidence            599999999999999996654

>d1dfbh1 b.1.1.1 (H:1-126) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 3 [TaxId: 9606]

Probab=90.68  E-value=0.13  Score=29.52  Aligned_cols=22  Identities=18%  Similarity=0.366  Sum_probs=19.1

Q ss_pred             EEEEcccCCCCCeeeEEEeEeC
Q psy7035          22 SLVLQNVSRARAGHYTCVGSNG   43 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N~   43 (70)
                      .|.|.+++.+|++.|.|.....
T Consensus        80 ~L~~~~L~~eDtavYYCAr~~~  101 (126)
T d1dfbh1          80 YLQMNSLRAEDMALYYCVKGRD  101 (126)
T ss_dssp             EEEECSCCGGGCEEEEEEEEEC
T ss_pred             EeeeeeeccCcceEEEEEeccC
Confidence            5999999999999999976554

>d1ct8b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]

Probab=90.65  E-value=0.067  Score=30.42  Aligned_cols=20  Identities=10%  Similarity=0.323  Sum_probs=17.6

Q ss_pred             EEEEcccCCCCCeeeEEEeE
Q psy7035          22 SLVLQNVSRARAGHYTCVGS   41 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~   41 (70)
                      .|.|.+++.+|++.|.|...
T Consensus        80 yL~i~~L~~eDtAvYYCAr~   99 (118)
T d1ct8b1          80 YMQFSSLTTEDSAIYYCARY   99 (118)
T ss_dssp             EEEECSCCGGGCEEEEEEEE
T ss_pred             EecccccCCCcceEEEEeee
Confidence            58999999999999999543

>d2jelh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=90.61  E-value=0.068  Score=30.40  Aligned_cols=18  Identities=17%  Similarity=0.423  Sum_probs=16.7

Q ss_pred             EEEEcccCCCCCeeeEEE
Q psy7035          22 SLVLQNVSRARAGHYTCV   39 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~   39 (70)
                      .|.|.+++.+|++.|.|.
T Consensus        80 ~L~~~sL~~eDTAvYYCA   97 (118)
T d2jelh1          80 YMELARLTSEDSAIYYCA   97 (118)
T ss_dssp             EEEECSCCGGGCEEEEEE
T ss_pred             eecccccccCcceeeeEE
Confidence            599999999999999994

>d1dlfh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=90.48  E-value=0.089  Score=29.99  Aligned_cols=21  Identities=24%  Similarity=0.494  Sum_probs=18.1

Q ss_pred             EEEEcccCCCCCeeeEEEeEe
Q psy7035          22 SLVLQNVSRARAGHYTCVGSN   42 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N   42 (70)
                      .|.|.+++.+|++.|.|....
T Consensus        82 ~L~~~~L~~eDtAvYYCA~~~  102 (120)
T d1dlfh_          82 YLQMNTLRAEDTGIYYCTGIY  102 (120)
T ss_dssp             EEEECSCCGGGCEEEEEEEEB
T ss_pred             ccceeeccCCCceEEEeeEec
Confidence            599999999999999995443

>d1q9rb1 b.1.1.1 (B:1-111) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=90.46  E-value=0.089  Score=30.04  Aligned_cols=22  Identities=14%  Similarity=0.378  Sum_probs=19.0

Q ss_pred             EEEEcccCCCCCeeeEEEeEeC
Q psy7035          22 SLVLQNVSRARAGHYTCVGSNG   43 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N~   43 (70)
                      .|.|.+++.+|++.|.|.....
T Consensus        82 ~L~~~sL~~eDTAvYYCar~~~  103 (122)
T d1q9rb1          82 YLQMNTLRAEDSATYYCARDHD  103 (122)
T ss_dssp             EEEECSCCGGGCEEEEEEECCC
T ss_pred             ccceeeeccCcceEEEEEecCC
Confidence            5999999999999999976543

>d1d5mb1 b.1.1.2 (B:93-190) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DR group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DR group [TaxId: 9606]

Probab=90.43  E-value=0.18  Score=26.87  Aligned_cols=42  Identities=12%  Similarity=0.097  Sum_probs=24.5

Q ss_pred             cccCeEcCcCccc--eEEecCCE---EEEcccCCCCCeeeEEEeEeC
Q psy7035           2 SFSNVQLYNNISA--GVIVSNQS---LVLQNVSRARAGHYTCVGSNG   43 (70)
Q Consensus         2 ~~ng~~l~~~~~~--~~~~~~~t---L~i~~v~~~D~G~Y~C~a~N~   43 (70)
                      ++||.++..+...  ...-.+++   .....+...+...|+|.+.+.
T Consensus        40 ~~~g~~~~~~~~~~~~~~~~dgtf~~~s~l~~~~~~~~~ytC~V~H~   86 (98)
T d1d5mb1          40 FRNGQEEKTGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHP   86 (98)
T ss_dssp             EETTEECCSSEEECCCEECSSSCEEEEEEEECCCCTTCEEEEEEECT
T ss_pred             EECCEEcCCCCEECeEEeCCCcEEEEEEEeeEcCCCCCEEEEEEEEC
Confidence            4677777543111  11122332   333456778888999999996

>d2p49b1 b.1.1.1 (B:1-121) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=90.41  E-value=0.091  Score=29.99  Aligned_cols=20  Identities=15%  Similarity=0.419  Sum_probs=17.8

Q ss_pred             EEEEcccCCCCCeeeEEEeE
Q psy7035          22 SLVLQNVSRARAGHYTCVGS   41 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~   41 (70)
                      .|.|.+++.+|++.|.|...
T Consensus        80 yLq~~~L~~eDtAvYYCAr~   99 (121)
T d2p49b1          80 YLQMDSLKPEDTATYYCAAG   99 (121)
T ss_dssp             EEEECSCCGGGCEEEEEEES
T ss_pred             EEEeeeccccceeEEeeecc
Confidence            59999999999999999653

>d1vgeh1 b.1.1.1 (H:1-122) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=90.34  E-value=0.1  Score=29.76  Aligned_cols=20  Identities=15%  Similarity=0.321  Sum_probs=17.8

Q ss_pred             EEEEcccCCCCCeeeEEEeE
Q psy7035          22 SLVLQNVSRARAGHYTCVGS   41 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~   41 (70)
                      .|.|.+++.+|++.|.|...
T Consensus        81 yL~~~~L~~eDtA~YYCAr~  100 (122)
T d1vgeh1          81 YMGLSSLRPEDTAVYYCARD  100 (122)
T ss_dssp             EEEECSCCGGGCEEEEEEEE
T ss_pred             eecccccCCCcceEEEEeec
Confidence            59999999999999999654

>d1rjca1 b.1.1.1 (A:2-127) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=90.32  E-value=0.092  Score=30.09  Aligned_cols=21  Identities=14%  Similarity=0.390  Sum_probs=18.3

Q ss_pred             EEEEcccCCCCCeeeEEEeEe
Q psy7035          22 SLVLQNVSRARAGHYTCVGSN   42 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N   42 (70)
                      .|.|.+++.+|++.|.|....
T Consensus        79 ~L~i~~l~~eDTAvYYCAr~~   99 (126)
T d1rjca1          79 YLQMNSLKPEDTAMYYCAADT   99 (126)
T ss_dssp             EEEECSCCGGGCEEEEEEECC
T ss_pred             EEEEeccCcccCceeEEEeec
Confidence            499999999999999997544

>d1mjuh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=90.23  E-value=0.077  Score=30.11  Aligned_cols=19  Identities=16%  Similarity=0.431  Sum_probs=17.2

Q ss_pred             EEEEcccCCCCCeeeEEEe
Q psy7035          22 SLVLQNVSRARAGHYTCVG   40 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a   40 (70)
                      .|.|.+++.+|++.|.|..
T Consensus        80 yL~~~sL~~eDtAvYYCAr   98 (116)
T d1mjuh1          80 YMQLSSLTSDDSAVYYCAN   98 (116)
T ss_dssp             EEEECSCCGGGCEEEEEEE
T ss_pred             EecccccCCCCceEEEEcc
Confidence            6899999999999999954

>d1b2wh1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=90.15  E-value=0.058  Score=30.67  Aligned_cols=19  Identities=16%  Similarity=0.370  Sum_probs=17.2

Q ss_pred             EEEEcccCCCCCeeeEEEe
Q psy7035          22 SLVLQNVSRARAGHYTCVG   40 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a   40 (70)
                      .|.|.+++.+|++.|.|..
T Consensus        80 ~L~~~sL~~eDTAvYYCAr   98 (117)
T d1b2wh1          80 YLQMNSLRPEDTAVYYCAR   98 (117)
T ss_dssp             EEEECSCCGGGCEEEECCE
T ss_pred             EeeeccccCCcceEEEEcc
Confidence            6999999999999999954

>d1indh1 b.1.1.1 (H:1-114) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=90.14  E-value=0.079  Score=29.94  Aligned_cols=19  Identities=21%  Similarity=0.424  Sum_probs=17.3

Q ss_pred             EEEEcccCCCCCeeeEEEe
Q psy7035          22 SLVLQNVSRARAGHYTCVG   40 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a   40 (70)
                      .|.|.+++.+|++.|.|..
T Consensus        80 ~L~~~~L~~eDtAvYYCA~   98 (114)
T d1indh1          80 YLQLNSLRSEDTALYFCAS   98 (114)
T ss_dssp             EEEECSCCGGGCEEEEEEC
T ss_pred             eeeeeeeccCcccEEEECC
Confidence            4999999999999999964

>d1ieha_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=90.11  E-value=0.49  Score=27.30  Aligned_cols=38  Identities=11%  Similarity=0.207  Sum_probs=25.1

Q ss_pred             EEEEcccCCCCCeeeEEEeEeCCCccc-ceeEEEEEEeC
Q psy7035          22 SLVLQNVSRARAGHYTCVGSNGEGDGQ-SNAQKTAYDIG   59 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N~~G~~~-s~~~~L~V~~~   59 (70)
                      .|.|.+++.+|++.|.|......+... ..-..++|..+
T Consensus        80 yL~i~~L~~eDTAvYYCAr~~~~~~d~WGqGT~VTVsSa  118 (135)
T d1ieha_          80 YLQMNSLKSEDTAVYYCAKYSGGALDAWGQGTQVTVSSQ  118 (135)
T ss_dssp             EEEEESCCSSSCEEEEEEEBSSSSBCCCSCCEEEEECSS
T ss_pred             EecEeeeCcccceeeEEEEecCCccceeCCCEEEEEECC
Confidence            599999999999999996554322111 22345666544

>d2nxyd1 b.1.1.1 (D:3001-3128) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=90.11  E-value=0.098  Score=30.10  Aligned_cols=22  Identities=27%  Similarity=0.455  Sum_probs=19.1

Q ss_pred             EEEEcccCCCCCeeeEEEeEeC
Q psy7035          22 SLVLQNVSRARAGHYTCVGSNG   43 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N~   43 (70)
                      .|.|.+++.+|++.|.|.....
T Consensus        80 yL~~~sL~~eDTA~YYCAr~~~  101 (128)
T d2nxyd1          80 YLELRNLRSDDTAVYFCAGVYE  101 (128)
T ss_dssp             EEEECSCCGGGCEEEEEEEEEC
T ss_pred             EeeeeeccccCceEEEEeEEec
Confidence            5899999999999999986653

>d3cx5j1 b.1.1.1 (J:1-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]

Probab=90.00  E-value=0.082  Score=30.40  Aligned_cols=20  Identities=30%  Similarity=0.484  Sum_probs=18.0

Q ss_pred             EEEEcccCCCCCeeeEEEeE
Q psy7035          22 SLVLQNVSRARAGHYTCVGS   41 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~   41 (70)
                      .|.|.+++.+|++.|.|...
T Consensus        80 yL~l~~l~~eDtAvYyCAr~   99 (127)
T d3cx5j1          80 FLKLNSVTTEDTATYYCARS   99 (127)
T ss_dssp             EEEECSCCGGGCEEEEEEEE
T ss_pred             ecceeccccccceEEEeeee
Confidence            59999999999999999654

>d2fx7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=89.98  E-value=0.11  Score=29.76  Aligned_cols=22  Identities=18%  Similarity=0.324  Sum_probs=19.1

Q ss_pred             EEEEcccCCCCCeeeEEEeEeC
Q psy7035          22 SLVLQNVSRARAGHYTCVGSNG   43 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N~   43 (70)
                      .|.|.+++.+|++.|.|.....
T Consensus        80 yL~~~sL~~eDTavYYCAR~~~  101 (127)
T d2fx7h1          80 YLELNSLRPEDTAVYYCAREGT  101 (127)
T ss_dssp             EEEECSCCGGGCEEEEEEEEEE
T ss_pred             eeeecccCcccceEEEEeeccc
Confidence            5999999999999999976543

>d1fn4b1 b.1.1.1 (B:1-106) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=89.94  E-value=0.11  Score=29.39  Aligned_cols=22  Identities=18%  Similarity=0.333  Sum_probs=18.4

Q ss_pred             EEEEcccCCCCCeeeEEEeEeC
Q psy7035          22 SLVLQNVSRARAGHYTCVGSNG   43 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N~   43 (70)
                      .|.|.+++.+|++.|.|.....
T Consensus        79 ~L~~~~L~~eDTAvYyCAr~~~  100 (116)
T d1fn4b1          79 FLKMNSLQTDDTGTYYCTRDLY  100 (116)
T ss_dssp             ECCEESCCCCCCEEEEEEEECS
T ss_pred             hcceeccCCCCCEEEEEEeecC
Confidence            5889999999999999965443

>d1nfdf1 b.1.1.1 (F:1-114) Immunoglobulin heavy chain variable domain, VH {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=89.89  E-value=0.1  Score=29.77  Aligned_cols=20  Identities=15%  Similarity=0.331  Sum_probs=17.9

Q ss_pred             EEEEcccCCCCCeeeEEEeE
Q psy7035          22 SLVLQNVSRARAGHYTCVGS   41 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~   41 (70)
                      .|.|.+++.+|++.|.|...
T Consensus        82 yL~~~~L~~eDTAvYYCAr~  101 (121)
T d1nfdf1          82 YLQMNRLRVDDTAIYYCTRA  101 (121)
T ss_dssp             EEEEESCCGGGCEECEEEEE
T ss_pred             eceecccCCCcceEEEEecc
Confidence            49999999999999999654

>d1ncwh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]

Probab=89.78  E-value=0.12  Score=29.29  Aligned_cols=20  Identities=30%  Similarity=0.542  Sum_probs=17.8

Q ss_pred             EEEEcccCCCCCeeeEEEeE
Q psy7035          22 SLVLQNVSRARAGHYTCVGS   41 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~   41 (70)
                      .|.|.+++.+|+..|.|...
T Consensus        80 ~L~~~sL~~eDTAvYYCAr~   99 (119)
T d1ncwh1          80 FLQLNSVTTEDTATYYCAGL   99 (119)
T ss_dssp             EEEECSCCGGGCEEEEEEEE
T ss_pred             eccccccccCCceEEEEeEe
Confidence            59999999999999999543

>d2fb4h1 b.1.1.1 (H:1-119) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 3 [TaxId: 9606]

Probab=89.69  E-value=0.17  Score=28.94  Aligned_cols=22  Identities=23%  Similarity=0.510  Sum_probs=18.9

Q ss_pred             EEEEcccCCCCCeeeEEEeEeC
Q psy7035          22 SLVLQNVSRARAGHYTCVGSNG   43 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N~   43 (70)
                      .|.|.+++.+|++.|.|.....
T Consensus        80 yL~~~~L~~eDTA~YYCAr~~~  101 (127)
T d2fb4h1          80 FLQMDSLRPEDTGVYFCARDGG  101 (127)
T ss_dssp             EEEECSCCGGGCEEEEEEEECS
T ss_pred             EeeeeeeeecceeEEEEEEecC
Confidence            5999999999999999975544

>d1um5h1 b.1.1.1 (H:3-119) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=89.68  E-value=0.091  Score=29.79  Aligned_cols=20  Identities=25%  Similarity=0.441  Sum_probs=17.8

Q ss_pred             EEEEcccCCCCCeeeEEEeE
Q psy7035          22 SLVLQNVSRARAGHYTCVGS   41 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~   41 (70)
                      .|.|.+++.+|+..|.|...
T Consensus        79 ~L~m~sL~~eDtAvYYCAr~   98 (117)
T d1um5h1          79 YLELSSLTSEDSAVYYCARS   98 (117)
T ss_dssp             EEEECSCCGGGCEEEEEEEE
T ss_pred             eecccccCCCcceEEEEeec
Confidence            59999999999999999643

>d1ad9b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=89.66  E-value=0.11  Score=29.53  Aligned_cols=20  Identities=15%  Similarity=0.378  Sum_probs=17.7

Q ss_pred             EEEEcccCCCCCeeeEEEeE
Q psy7035          22 SLVLQNVSRARAGHYTCVGS   41 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~   41 (70)
                      .|.|.+++.+|++.|.|...
T Consensus        80 ~L~m~~L~~eDTAvYYCAr~   99 (120)
T d1ad9b1          80 YMELSSLRSEDTAFYFCARE   99 (120)
T ss_dssp             EEEECSCCGGGCEEEEEEEE
T ss_pred             eccccccCCCcceEEEEEEc
Confidence            58999999999999999653

>d1de4a1 b.1.1.2 (A:182-275) Hemochromatosis protein Hfe, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Hemochromatosis protein Hfe, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.64  E-value=0.28  Score=26.02  Aligned_cols=42  Identities=12%  Similarity=0.181  Sum_probs=24.6

Q ss_pred             cccCeEcCcC-cc-ceEEe-cCCE---EEEcccCCCCCeeeEEEeEeC
Q psy7035           2 SFSNVQLYNN-IS-AGVIV-SNQS---LVLQNVSRARAGHYTCVGSNG   43 (70)
Q Consensus         2 ~~ng~~l~~~-~~-~~~~~-~~~t---L~i~~v~~~D~G~Y~C~a~N~   43 (70)
                      ++||+++... .. ..... .+++   .....+...|...|+|.+.+.
T Consensus        37 ~~dg~~~~~~~~~~~~~~~~~~~t~~~~s~l~v~~~~~~~ytC~V~H~   84 (94)
T d1de4a1          37 LKDKQPMDAKEFEPKDVLPNGDGTYQGWITLAVPPGEEQRYTCQVEHP   84 (94)
T ss_dssp             EETTEECCGGGSCCCEEEECTTSCEEEEEEEEECTTCGGGEEEEEECT
T ss_pred             EECCEECccCcccccceEeCCCceEEEEEEEEECCCCCCEEEEEEEeC
Confidence            5788888532 11 12222 2222   333445667778899999996

>d1muja1 b.1.1.2 (A:84-183) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-A group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-A group [TaxId: 10090]

Probab=89.58  E-value=0.15  Score=27.55  Aligned_cols=42  Identities=10%  Similarity=0.051  Sum_probs=23.1

Q ss_pred             cccCeEcCcCccc--eEEecCCE---EEEcccCCCCCeeeEEEeEeC
Q psy7035           2 SFSNVQLYNNISA--GVIVSNQS---LVLQNVSRARAGHYTCVGSNG   43 (70)
Q Consensus         2 ~~ng~~l~~~~~~--~~~~~~~t---L~i~~v~~~D~G~Y~C~a~N~   43 (70)
                      ++||+++......  ...-.+|+   .....+..++.+.|+|.+.+.
T Consensus        39 ~~ng~~v~~~~~~t~~~~~~dgtf~~~s~l~v~~~~~~~ytC~V~H~   85 (100)
T d1muja1          39 LRNSKSVADGVYETSFFVNRDYSFHKLSYLTFIPSDDDIYDCKVEHW   85 (100)
T ss_dssp             EESSSBCCSSEEECCCEECTTSCEEEEEEEEECCCTTCCEEEEEECT
T ss_pred             EeCCeeccCCceeeeeEECCCCCEEEEEEeEEcCCCCCEEEEEEEEC
Confidence            4788777542111  11122332   222334556778999999985

>d1uvqa1 b.1.1.2 (A:85-183) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=89.56  E-value=0.19  Score=26.92  Aligned_cols=42  Identities=12%  Similarity=0.120  Sum_probs=22.3

Q ss_pred             cccCeEcCcCccc-e-EEecCCE---EEEcccCCCCCeeeEEEeEeC
Q psy7035           2 SFSNVQLYNNISA-G-VIVSNQS---LVLQNVSRARAGHYTCVGSNG   43 (70)
Q Consensus         2 ~~ng~~l~~~~~~-~-~~~~~~t---L~i~~v~~~D~G~Y~C~a~N~   43 (70)
                      ++||+++..+... . ..-.+++   .....+.++|...|+|.+.+.
T Consensus        41 ~~ng~~~~~~~~~~~~~~~~dgtf~~~s~l~v~~~~~~~ytC~V~H~   87 (99)
T d1uvqa1          41 LSNGQSVTEGVSETSFLSKSDHSFFKISYLTFLPSADEIYDCKVEHW   87 (99)
T ss_dssp             EETTEEECTTEEECCCEECTTSCEEEEEEEEECCCTTCCEEEEEECT
T ss_pred             EECCEeccCCcEecceEECCCCCEEEEEEEEEcCCCCCEEEEEEEeC
Confidence            4688887643111 1 1122332   112233455667899999985

>d3c2ah1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 4 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 4 [TaxId: 9606]

Probab=89.47  E-value=0.12  Score=29.84  Aligned_cols=20  Identities=15%  Similarity=0.429  Sum_probs=17.9

Q ss_pred             EEEEcccCCCCCeeeEEEeE
Q psy7035          22 SLVLQNVSRARAGHYTCVGS   41 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~   41 (70)
                      .|.|.+++.+|++.|.|...
T Consensus        82 ~Lq~~~L~~eDTAvYYCAR~  101 (131)
T d3c2ah1          82 YLQMNSLKTEDTAVYSCTTD  101 (131)
T ss_dssp             EEEECSCCGGGCEEEEEEEE
T ss_pred             ecceeccccCCceEEEEecc
Confidence            59999999999999999755

>d1rhhb1 b.1.1.1 (B:3-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=89.47  E-value=0.16  Score=29.19  Aligned_cols=22  Identities=23%  Similarity=0.413  Sum_probs=18.9

Q ss_pred             EEEEcccCCCCCeeeEEEeEeC
Q psy7035          22 SLVLQNVSRARAGHYTCVGSNG   43 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N~   43 (70)
                      .|.|.+++.+|++.|.|.....
T Consensus        79 ~L~~~~L~~eDtAvYyCAr~~~  100 (130)
T d1rhhb1          79 YMELTNLRSDDTAVYYCARDFG  100 (130)
T ss_dssp             EEEECSCCGGGCEEEEEEEECC
T ss_pred             EEEeeccCCCCcEEEEEEeecC
Confidence            4999999999999999976543

>d1op3h1 b.1.1.1 (H:1-115) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=89.47  E-value=0.2  Score=28.64  Aligned_cols=21  Identities=14%  Similarity=0.325  Sum_probs=18.5

Q ss_pred             EEEEcccCCCCCeeeEEEeEe
Q psy7035          22 SLVLQNVSRARAGHYTCVGSN   42 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N   42 (70)
                      .|.|.+++.+|+..|.|....
T Consensus        80 ~Lqm~sL~~eDTAvYYCAr~~  100 (125)
T d1op3h1          80 YLQMHKMRVEDTAIYYCARKG  100 (125)
T ss_dssp             EEEECSCCGGGCEEEEEEEEC
T ss_pred             eeeeeccCCccceeEeEeecc
Confidence            589999999999999997654

>d1n0xh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=89.20  E-value=0.1  Score=30.00  Aligned_cols=19  Identities=21%  Similarity=0.431  Sum_probs=17.1

Q ss_pred             EEEEcccCCCCCeeeEEEe
Q psy7035          22 SLVLQNVSRARAGHYTCVG   40 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a   40 (70)
                      .|.|.+++.+|++.|.|..
T Consensus        80 yL~~~~L~~eDtAvYYCAR   98 (127)
T d1n0xh1          80 YMELRSLRSADTAVYYCAR   98 (127)
T ss_dssp             EEEECSCCGGGCEEEEEEE
T ss_pred             EEEEEccCCCCceEEEEEe
Confidence            5899999999999999953

>d1lmka1 b.1.1.1 (A:2-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=88.85  E-value=0.11  Score=29.77  Aligned_cols=19  Identities=16%  Similarity=0.412  Sum_probs=17.3

Q ss_pred             EEEEcccCCCCCeeeEEEe
Q psy7035          22 SLVLQNVSRARAGHYTCVG   40 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a   40 (70)
                      .|.|.+++.+|++.|.|..
T Consensus        79 yL~m~~L~~eDTAvYYCAr   97 (126)
T d1lmka1          79 YMQLSSLTSEDSAVYYCAR   97 (126)
T ss_dssp             EEEECSCCGGGCEEEEEEE
T ss_pred             EeeecccCCCcceEEEEee
Confidence            6999999999999999964

>d1rzga1 b.1.1.1 (A:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=88.84  E-value=0.11  Score=29.93  Aligned_cols=21  Identities=10%  Similarity=0.295  Sum_probs=18.1

Q ss_pred             EEEEcccCCCCCeeeEEEeEe
Q psy7035          22 SLVLQNVSRARAGHYTCVGSN   42 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N   42 (70)
                      .|.|.+++.+|++.|.|....
T Consensus        80 yL~~~sL~~eDtA~YYCAr~~  100 (130)
T d1rzga1          80 YMELSSLRSEDTAVFYCASPY  100 (130)
T ss_dssp             EEEECSCCGGGCEEEEEEECC
T ss_pred             EeeeeecCCCccEEEEEEEec
Confidence            488999999999999997543

>d1lo4h1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]

Probab=88.34  E-value=0.13  Score=29.20  Aligned_cols=20  Identities=15%  Similarity=0.405  Sum_probs=17.9

Q ss_pred             EEEEcccCCCCCeeeEEEeE
Q psy7035          22 SLVLQNVSRARAGHYTCVGS   41 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~   41 (70)
                      .|.|.+++.+|++.|.|...
T Consensus        79 ~L~i~~l~~eDtA~YyCAr~   98 (118)
T d1lo4h1          79 TLQMSRLRSEDTAIYYCARG   98 (118)
T ss_dssp             EEEECSCCGGGCEEEEEEEE
T ss_pred             eeccccccCCcceEEEeccc
Confidence            69999999999999999654

>d1yedb1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=87.72  E-value=0.15  Score=29.22  Aligned_cols=20  Identities=15%  Similarity=0.306  Sum_probs=17.6

Q ss_pred             EEEEcccCCCCCeeeEEEeE
Q psy7035          22 SLVLQNVSRARAGHYTCVGS   41 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~   41 (70)
                      .|.|.+++.+|++.|.|...
T Consensus        80 ~L~~~sL~~eDTAvYYCAR~   99 (124)
T d1yedb1          80 YMQLSSLKSEDSAVYFCTRW   99 (124)
T ss_dssp             EEEEESCCGGGCEEEEEEEC
T ss_pred             EecccccCCCcceEEEeccc
Confidence            48999999999999999643

>d1rzfh1 b.1.1.1 (H:2-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=87.68  E-value=0.28  Score=28.26  Aligned_cols=23  Identities=17%  Similarity=0.307  Sum_probs=19.1

Q ss_pred             EEEEcccCCCCCeeeEEEeEeCC
Q psy7035          22 SLVLQNVSRARAGHYTCVGSNGE   44 (70)
Q Consensus        22 tL~i~~v~~~D~G~Y~C~a~N~~   44 (70)
                      .|.|.+++.+|++.|.|......
T Consensus        79 ~L~~~~L~~eDtA~YYCAr~~~~  101 (133)
T d1rzfh1          79 YLHLRGLRSDDTAVYYCASNSIA  101 (133)
T ss_dssp             EEEECSCCGGGCEEEEEEEEECC
T ss_pred             EEeeccCCCCCCEEEEeeeccCC
Confidence            58899999999999999655443

>d1xiwb_ b.1.1.4 (B:) CD3 delta chain ectodomain fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 delta chain ectodomain fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.56  E-value=0.22  Score=26.14  Aligned_cols=38  Identities=16%  Similarity=0.150  Sum_probs=23.6

Q ss_pred             cCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeC
Q psy7035          19 SNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIG   59 (70)
Q Consensus        19 ~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~   59 (70)
                      .+.+|-+-+..+.=.|.|.|.+.....   .+...|.|+|.
T Consensus        33 ~~k~lnLG~~~~DPRG~Y~C~~~e~~~---~k~~~lQVyYR   70 (74)
T d1xiwb_          33 DITRLDLGKRILDPRGIYRCNGTDIYK---DKESTVQVHYR   70 (74)
T ss_dssp             GGTEEEEEEGGGCCEEEEEEC-----------CEEEEEEEE
T ss_pred             CccEeecCCcccCCCcceEeCCccccc---ccCccEEEEEE
Confidence            356788888889999999997764332   22345888874

>d1hdma1 b.1.1.2 (A:94-196) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=87.14  E-value=1.3  Score=23.70  Aligned_cols=57  Identities=9%  Similarity=-0.048  Sum_probs=29.6

Q ss_pred             cccCeEcCcCccce-EEecCCEEEEc---ccCCCCCeeeEEEeEeCCCcccceeEEEEEEeCCCCC
Q psy7035           2 SFSNVQLYNNISAG-VIVSNQSLVLQ---NVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGLGIP   63 (70)
Q Consensus         2 ~~ng~~l~~~~~~~-~~~~~~tL~i~---~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~p~~~   63 (70)
                      ++||..+....... ..-++++..+.   .+..+|...|+|.+... |    ..-.+.+.-.|..|
T Consensus        40 ~~ng~~~~~~~~~~~~~~~dgty~~~S~L~v~~~~~~~ytC~V~H~-~----l~~p~~~~w~~~~~  100 (103)
T d1hdma1          40 HDHSVPVEGFGPTFVSAVDGLSFQAFSYLNFTPEPSDIFSCIVTHE-P----DRYTAIAYWVPRNA  100 (103)
T ss_dssp             EETTEECSSCCCEEEEEETTTEEEEEEEEEECCCTTCCEEEEEEET-T----TTEEEEEEECCCSC
T ss_pred             EECCeecCCcEeceEEeCCCCcEEEEEEEEEecCCCCEEEEEEEeC-C----CCCCEEEEecCCCC
Confidence            46777664322211 22345543222   23556666899999996 2    23345555555544

>d1fnga1 b.1.1.2 (A:82-182) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-E group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-E group [TaxId: 10090]

Probab=86.22  E-value=0.41  Score=25.67  Aligned_cols=42  Identities=7%  Similarity=0.037  Sum_probs=21.9

Q ss_pred             cccCeEcCcCccc-e-EEecCCE---EEEcccCCCCCeeeEEEeEeC
Q psy7035           2 SFSNVQLYNNISA-G-VIVSNQS---LVLQNVSRARAGHYTCVGSNG   43 (70)
Q Consensus         2 ~~ng~~l~~~~~~-~-~~~~~~t---L~i~~v~~~D~G~Y~C~a~N~   43 (70)
                      ++||+++..+... . .--.+++   -....+..++...|+|.+.+.
T Consensus        41 ~~ng~~~~~~~~~~~~~~~~dgty~~~S~L~v~~~~~~~ytC~V~H~   87 (101)
T d1fnga1          41 LRNGRPVTEGVSETVFLPRDDHLFRKFHYLTFLPSTDDFYDCEVDHW   87 (101)
T ss_dssp             EETTEEECSSEEECCCEECSSSCEEEEEEEEECCCTTCCEEEEEECT
T ss_pred             EECCeecCCCcEeCeEEECCCCcEEEEEEeEEcCCCCCEEEEEEEEC
Confidence            4688887643111 1 1122332   112223445566899999995

>d1hdmb1 b.1.1.2 (B:88-185) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=86.02  E-value=0.7  Score=24.54  Aligned_cols=42  Identities=10%  Similarity=0.074  Sum_probs=22.9

Q ss_pred             cccCeEcCcCccc-eEE-ecCCEE---EEcccCCCCCeeeEEEeEeC
Q psy7035           2 SFSNVQLYNNISA-GVI-VSNQSL---VLQNVSRARAGHYTCVGSNG   43 (70)
Q Consensus         2 ~~ng~~l~~~~~~-~~~-~~~~tL---~i~~v~~~D~G~Y~C~a~N~   43 (70)
                      ++||+.+...... ... -.+++-   ....|..++...|+|.+.+.
T Consensus        39 ~~ng~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~~~~ytC~V~H~   85 (98)
T d1hdmb1          39 RKNGKLVMHSSAHKTAQPNGDWTYQTLSHLALTPSYGDTYTCVVEHI   85 (98)
T ss_dssp             EETTEECCCCCSBCCCEECSSSCEEEEEEEEECCCTTCCEEEEEECT
T ss_pred             EECCEeccCCeEeCceEECCCCCEEEEEEeEcCCCCCCEEEEEEEeC
Confidence            4688877543211 112 123321   11234566677899999996

>d1t7va1 b.1.1.2 (A:184-277) Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.51  E-value=1.3  Score=22.97  Aligned_cols=42  Identities=14%  Similarity=0.213  Sum_probs=22.9

Q ss_pred             cccCeEcCcCccceEEe-cCCE---EEEcccCCCCCeeeEEEeEeC
Q psy7035           2 SFSNVQLYNNISAGVIV-SNQS---LVLQNVSRARAGHYTCVGSNG   43 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~~-~~~t---L~i~~v~~~D~G~Y~C~a~N~   43 (70)
                      ++||+++.......... .+++   .....+...|...|+|.+.+.
T Consensus        37 ~~ng~~~~~~~~~~~~~~~~~t~~~~s~l~~~~~~~~~ytC~V~H~   82 (94)
T d1t7va1          37 TRAGEVQEPELRGDVLHNGNGTYQSWVVVAVPPQDTAPYSCHVQHS   82 (94)
T ss_dssp             EETTEECCCSEEEEEEETTTTEEEEEEEEEECTTCCSCEEEEEEET
T ss_pred             EECCEECCCcEEeeeecCCCCeEEEEEEeEeCCCCCCEEEEEEEEC
Confidence            46777665332222221 2332   223334566677899999996

>d3frua1 b.1.1.2 (A:179-269) Fc (IgG) receptor, alpha-3 domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Fc (IgG) receptor, alpha-3 domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=84.32  E-value=0.54  Score=24.58  Aligned_cols=39  Identities=13%  Similarity=0.089  Sum_probs=22.1

Q ss_pred             cccCeEcCcCccceEEecCC------EEEEcccCCCCCeeeEEEeEeC
Q psy7035           2 SFSNVQLYNNISAGVIVSNQ------SLVLQNVSRARAGHYTCVGSNG   43 (70)
Q Consensus         2 ~~ng~~l~~~~~~~~~~~~~------tL~i~~v~~~D~G~Y~C~a~N~   43 (70)
                      ++||+++.........-.++      .|.|   ..+|...|+|.+...
T Consensus        37 ~~ng~~~~~~~~~~~~~~dgty~~~S~l~v---~~~~~~~ytC~V~H~   81 (91)
T d3frua1          37 LRNGLASGSGNCSTGPNGDGSFHAWSLLEV---KRGDEHHYQCQVEHE   81 (91)
T ss_dssp             EETTEECCCCEEEEEECSSSCEEEEEEEEE---ETTCGGGEEEEEECT
T ss_pred             EECCEeCCccCccceecCCCCEeEEEEEEE---CCCCCCEEEEEEEeC
Confidence            46777765432211212333      3444   446667999999985

>d1uvqb1 b.1.1.2 (B:95-191) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=83.75  E-value=0.93  Score=23.82  Aligned_cols=18  Identities=22%  Similarity=0.388  Sum_probs=14.1

Q ss_pred             cccCCCCCeeeEEEeEeC
Q psy7035          26 QNVSRARAGHYTCVGSNG   43 (70)
Q Consensus        26 ~~v~~~D~G~Y~C~a~N~   43 (70)
                      -.+...+...|+|.+.+.
T Consensus        67 l~v~~~~~~~ytC~V~H~   84 (97)
T d1uvqb1          67 LEMTPQRGDVYTCHVEHP   84 (97)
T ss_dssp             EECCSCTTCCEEEEEECT
T ss_pred             eccCCCCCCEEEEEEEeC
Confidence            345667778999999996

>d1hxmb2 b.1.1.2 (B:124-230) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=80.73  E-value=0.7  Score=24.62  Aligned_cols=18  Identities=6%  Similarity=0.195  Sum_probs=12.0

Q ss_pred             CCCCCe-eeEEEeEeCCCc
Q psy7035          29 SRARAG-HYTCVGSNGEGD   46 (70)
Q Consensus        29 ~~~D~G-~Y~C~a~N~~G~   46 (70)
                      ..+|-| .|+|.+.+....
T Consensus        77 ~~~~w~~~ytC~V~H~s~~   95 (107)
T d1hxmb2          77 PEKSLDKEHRCIVRHENNK   95 (107)
T ss_dssp             CTGGGGSCEEEEEEETTSG
T ss_pred             ecccCCCeEEEEEEECCCC
Confidence            444423 699999997553