Psyllid ID: psy7036

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250----
Protein Sequence
MGIAEDFAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLVGEPEPTISW
Secondary Structure (PSIPRED)
cccccccccEEEEccccEEEcccccEEEEEEEEcccccEEEEEEccEEccccccEEEEEccccccccEEEEEEccccccccEEEEEEEEEccEEEEEEEEEEEEEccccccccEEEEccccEEEcccccEEEEEEEEcccccEEEEEEccEEccccccEEEEEcccccEEEEEEEEccccccccEEEEEEEEccccEEEEEEEEEEEccccccccccccccEEEcccccEEEcccccEEEEEEEEEEcccEEEc
Secondary Structure Prediction (SSPRO)
cccccccccEEEEccccEEEEcccEEEEEEEEEcccccEEEEEEccEEEcccccEEEEEEcccccccEEEEEEEccccccccEEEEEEEEccccccEEEEEEEEccccccccccEEcccccEEEEcccEEEEEEEEEcccccEEEEEEccEEEcccccEEEEEEcccccEEEEEEEEccccccccEEEEEEEEccccEEEEEEEEEEcccccccccccccEEEEcccccEEEEcccEEEEEEEEEcccccEEEc
Coil and Loop (DISEMBL)
mgiaedfapsftqkpqlrqedegNRLIFECQllcnpkpdivwfrgetqlsedtrtvmkttpigtnKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLNfsreqidglaptflkkpsirqeddgkRLLFECriqadpaptviwshsgvqvkedkrhkfsidkdghsyfaSLEIIDVTIEDAGKYKVTAknelgesnatislnfdsddapvpgegtkpvfterpvtkqsdddlNDIVIECrlvgepeptisw
Flexible Loop (DISEMBL)
mgiaedfapsftqkpqlrqEDEGNRLIFECQLLCNPKPDIVWFRgetqlsedtrtvmkttpigtnkyLVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLaptflkkpsirqEDDGKRLLFECRiqadpaptviwshsgvqvkedkrHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATislnfdsddapvpgegtkpvfterpvtkqsdddlndIVIECrlvgepeptisw
Low Complexity Region (SEG)
MGIAEDFAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLVGEPEPTISW
Disordered region (IsUnstruct)
************************RLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLK*********GKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTA********************************************NDIVIECRLV*********
Disordered Region (DISOPRED)
MG**EDFAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRH*FSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFDSDD***********FTERPVTKQSDDDLNDIVIECRLVGEPEPTISW
Disordered Region (DISEMBL)
MGIAEDFAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLVGEPEPTISW
Disordered Region (DISPRO)
****EDFAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLVGEPEPTISW
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGIAEDFAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLVGEPEPTISW
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	254	2.2.26 [Sep-21-2011]
Q23551	7158	Twitchin OS=Caenorhabditi	no	N/A	0.870	0.030	0.327	1e-30
Q9I7U4	18141	Titin OS=Drosophila melan	no	N/A	0.933	0.013	0.300	2e-21
Q18066	640	Disorganized muscle prote	no	N/A	0.917	0.364	0.298	3e-21
P11799	1906	Myosin light chain kinase	yes	N/A	0.913	0.121	0.273	9e-21
Q92626	1479	Peroxidasin homolog OS=Ho	yes	N/A	0.744	0.127	0.312	2e-18
Q3UQ28	1475	Peroxidasin homolog OS=Mu	yes	N/A	0.744	0.128	0.307	3e-18
A4IGL7	1457	Peroxidasin OS=Xenopus tr	yes	N/A	0.700	0.122	0.321	2e-17
O01761	8081	Muscle M-line assembly pr	no	N/A	0.937	0.029	0.246	3e-17
Q5VST9	7968	Obscurin OS=Homo sapiens	no	N/A	0.944	0.030	0.262	3e-17
Q6PDN3	1941	Myosin light chain kinase	no	N/A	0.901	0.117	0.253	4e-17

>sp|Q23551|UNC22_CAEEL Twitchin OS=Caenorhabditis elegans GN=unc-22 PE=1 SV=3

 Score =  133 bits (335), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 74/226 (32%), Positives = 115/226 (50%), Gaps = 5/226 (2%)

Query: 8   APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKY 67
           AP FTQKP ++Q   G+ L+ EC L  +P+P I W      L    R V   TP+G + Y
Sbjct: 4   APRFTQKPSIQQTPTGD-LLMECHLEADPQPTIAWQHSGNLLEPSGRVVQTLTPLGGSLY 62

Query: 68  LVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFS---REQIDGLAPTFLKKPSIRQE 124
              L + +    D G YK  A+N++GE  A+INLNF+    ++     P+F+ KP I  +
Sbjct: 63  KATLVIKEPNAGDGGAYKCTARNQLGESNANINLNFAGAGGDEAKSRGPSFVGKPRIIPK 122

Query: 125 DDGKRLLFECRIQADPAPTVIWSHSGVQVKEDK-RHKFSIDKDGHSYFASLEIIDVTIED 183
           D G  ++ EC++++   P   W   GV +      H    D    +Y   LEI   +  D
Sbjct: 123 DGGALIVMECKVKSASTPVAKWMKDGVPLSMGGLYHAIFSDLGDQTYLCQLEIRGPSSSD 182

Query: 184 AGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTK 229
           AG+Y+   +N+ GE+NA ++LNF+  D     E  +   + RP ++
Sbjct: 183 AGQYRCNIRNDQGETNANLALNFEEPDPSERQERKRSTASPRPSSR 228

Regulator of muscle contraction and relaxation. Senses mechanical strain that occurs during muscle activity by unfolding in clearly resolvable steps at differing forces.
Caenorhabditis elegans (taxid: 6239)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|Q9I7U4|TITIN_DROME Titin OS=Drosophila melanogaster GN=sls PE=1 SV=3

 Score =  102 bits (255), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 76/253 (30%), Positives = 115/253 (45%), Gaps = 16/253 (6%)

Query: 3     IAEDFAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVW-FRGETQLSEDTRTVMKTTP 61
             I E   P+F++KP+ +  DE   +I EC+L+  P+PDIVW F GE    E+ + V   T 
Sbjct: 16619 ILEGIPPTFSKKPKAQYVDENTNVILECRLVAVPEPDIVWTFNGEDIDEEEIKNVRIVTE 16678

Query: 62    IGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSI 121
                + Y   + +  V ++  G Y+V A N+ GE    I L       D  AP  L+    
Sbjct: 16679 SDMHMYCSVVHISKVKKSQEGTYEVIATNREGEARLPITLKVR--TTDKEAPQILEPLRN 16736

Query: 122   RQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTI 181
                 +G+ ++   +I  +P P V W   G  VK  K      DKD H    +L +I    
Sbjct: 16737 MVIREGESVVLSTQIVGNPPPKVTWYKDGKPVKNAKS-----DKDLH----TLTLITPQK 16787

Query: 182   EDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIE 241
              + G+Y V A N LG    T +L  +    P  G    P+F ER   +Q+     +I + 
Sbjct: 16788 SEKGEYTVKAVNPLGSVETTANLTIEE---PAGGNAEPPLFVER-FEEQNVPQKGEIRLP 16843

Query: 242   CRLVGEPEPTISW 254
              ++ G P P + W
Sbjct: 16844 AKVSGNPVPEVQW 16856

Key component in the assembly and functioning of adult and embryonic striated muscles and muscle tendons. By providing connections at the level of individual microfilaments, it contributes to the fine balance of forces between the two halves of the sarcomere. The size and extensibility of the cross-links are the main determinants of sarcomere extensibility properties of muscle. In non-muscle cells, seems to play a role in chromosome condensation and chromosome segregation during mitosis. Might link the lamina network to chromatin or nuclear actin, or both during interphase.

Drosophila melanogaster (taxid: 7227)

>sp|Q18066|DIM_CAEEL Disorganized muscle protein 1 OS=Caenorhabditis elegans GN=dim-1 PE=1 SV=3

 Score =  102 bits (254), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 77/258 (29%), Positives = 125/258 (48%), Gaps = 25/258 (9%)

Query: 8   APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKY 67
           AP F Q+P  RQ D+G+ L  EC +  NP P + W+    ++    R        G++ Y
Sbjct: 322 APHFPQQPVARQNDDGS-LELECFVDANPTPQVKWYYDNKEVENSGRFSANLANKGSDSY 380

Query: 68  LVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGL-APTFLKKPSIRQEDD 126
              L + ++ + DAG Y+    N  G+  A+ NL     ++ G  +PTF++KP I   DD
Sbjct: 381 SAILTIKELADADAGAYRCAIVNPHGKGNANFNL-----KLTGFSSPTFVEKPQISSRDD 435

Query: 127 GKRLLFECRIQADPAPTVIWSH---SGVQ---VKEDKRHKFSIDKDGHSYFASLEIIDVT 180
           G+ ++ E R ++   PT +W      G +      D+       + G+ Y+++LEI + T
Sbjct: 436 GQVMVMEFRAKSILEPTFVWQKLVGGGAEEIIANSDRIKAVKKLEAGNVYYSALEIKEPT 495

Query: 181 IE-DAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIV 239
            + DAG++  T KNE G+  AT ++ F+     VP EG  P FT +P   Q      +  
Sbjct: 496 KDKDAGQFICTVKNESGKLTATFTVKFE-----VP-EGA-PSFTRKPQILQQTSAGGEPA 548

Query: 240 IECRLVG---EPEPTISW 254
           I C  +G      P ++W
Sbjct: 549 I-CFDIGYSARMNPQVTW 565

Stabilizes the attachment of the myofilament lattice to the muscle cell membrane. Isoform b is sufficient for wild-type function.

Caenorhabditis elegans (taxid: 6239)

>sp|P11799|MYLK_CHICK Myosin light chain kinase, smooth muscle OS=Gallus gallus PE=1 SV=2

 Score =  100 bits (249), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 72/263 (27%), Positives = 117/263 (44%), Gaps = 31/263 (11%)

Query: 5   EDFAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGT 64
           E+ AP F+   +     EG   + +C +   P P+I W   E  +    +    T   G 
Sbjct: 524 EEVAPCFSSVLKGCTVSEGQDFVLQCYVGGVPVPEITWLLNEQPI----QYAHSTFEAGV 579

Query: 65  NKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDG-------------L 111
            K    L + D +  D G+Y   A+N  G  + S  +    ++                 
Sbjct: 580 AK----LTVQDALPEDDGIYTCLAENNAGRASCSAQVTVKEKKSSKKAEGTQAAKLNKTF 635

Query: 112 APTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYF 171
           AP FLK  +  +  DG +++    + A+P P +IW H+G +++E +   F  +K G+ Y 
Sbjct: 636 APIFLKGLTDLKVMDGSQVIMTVEVSANPCPEIIWLHNGKEIQETE--DFHFEKKGNEY- 692

Query: 172 ASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQS 231
            SL I +V  ED GKY   A NELGE+    +L         P +G +P F  +P +  +
Sbjct: 693 -SLYIQEVFPEDTGKYTCEAWNELGETQTQATLTVQE-----PQDGIQPWFISKPRSVTA 746

Query: 232 DDDLNDIVIECRLVGEPEPTISW 254
               N ++I C + G+P PT+ W
Sbjct: 747 AAGQN-VLISCAIAGDPFPTVHW 768

Phosphorylates a specific serine in the N-terminus of a myosin light chain, which leads to the formation of calmodulin/MLCK signal transduction complexes which allow selective transduction of calcium signals.

Gallus gallus (taxid: 9031)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

EC: 8

>sp|Q92626|PXDN_HUMAN Peroxidasin homolog OS=Homo sapiens GN=PXDN PE=1 SV=2

 Score = 92.8 bits (229), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 65/208 (31%), Positives = 97/208 (46%), Gaps = 19/208 (9%)

Query: 9   PSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYL 68
           P FT  PQ R   EG  + F+C+   NP P I W +G +QLS D R ++ ++  GT    
Sbjct: 433 PQFTVTPQDRVVIEGQTVDFQCEAKGNPPPVIAWTKGGSQLSVDRRHLVLSS--GT---- 486

Query: 69  VALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDGK 128
             L +  V   D G Y+ +A N +G      +L         + P F   PS    + G 
Sbjct: 487 --LRISGVALHDQGQYECQAVNIIGSQKVVAHLTVQPR----VTPVFASIPSDTTVEVGA 540

Query: 129 RLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYK 188
            +   C  Q +P P + W+  GVQV E    KF I  +G      L I DV   DAG+Y+
Sbjct: 541 NVQLPCSSQGEPEPAITWNKDGVQVTESG--KFHISPEGF-----LTINDVGPADAGRYE 593

Query: 189 VTAKNELGESNATISLNFDSDDAPVPGE 216
             A+N +G ++ ++ L+ +  D    G+
Sbjct: 594 CVARNTIGSASVSMVLSVNVPDVSRNGD 621

Displays low peroxidase activity and is likely to participate in H(2)O(2) metabolism and peroxidative reactions in the cardiovascular system. Plays a role in extracellular matrix formation.

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 1

EC: 1

EC: .

EC: 1

EC: .

EC: 7

>sp|Q3UQ28|PXDN_MOUSE Peroxidasin homolog OS=Mus musculus GN=Pxdn PE=2 SV=2

 Score = 92.4 bits (228), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 64/208 (30%), Positives = 97/208 (46%), Gaps = 19/208 (9%)

Query: 9   PSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYL 68
           P FT  PQ R   EG  + F+C    +P+P I W +G +QLS D R ++ ++  GT    
Sbjct: 430 PQFTVTPQSRVVIEGQTVDFQCAAKGHPQPVIAWTKGGSQLSVDRRHLVLSS--GT---- 483

Query: 69  VALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDGK 128
             L +  V   D G Y+ +A N +G      +L         + P F   PS    + G 
Sbjct: 484 --LRISGVALHDQGQYECQAVNIIGSQKVVAHLTVQPR----VTPVFASIPSDMTVEVGT 537

Query: 129 RLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYK 188
            +   C  Q +P P + W+  GVQV E    KF I  +G      L I DV   DAG+Y+
Sbjct: 538 NVQLPCSSQGEPEPAITWNKDGVQVTESG--KFHISPEGF-----LTINDVGTADAGRYE 590

Query: 189 VTAKNELGESNATISLNFDSDDAPVPGE 216
             A+N +G ++ ++ L+ +  D    G+
Sbjct: 591 CVARNTIGYASVSMVLSVNVPDVSRNGD 618

Displays low peroxidase activity and is likely to participate in H(2)O(2) metabolism and peroxidative reactions in the cardiovascular system (By similarity). Plays a role in extracellular matrix formation.

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: 1

EC: 1

EC: .

EC: 1

EC: .

EC: 7

>sp|A4IGL7|PXDN_XENTR Peroxidasin OS=Xenopus tropicalis GN=pxdn PE=2 SV=1

 Score = 90.1 bits (222), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 64/199 (32%), Positives = 94/199 (47%), Gaps = 21/199 (10%)

Query: 8   APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKY 67
            P FT  PQ R   EG+ + F C+   NPKP I W +G  QLS D R  + ++  GT + 
Sbjct: 422 VPQFTVVPQDRNVFEGHTVDFHCEAQGNPKPVIAWTKGGNQLSVDRRHQVLSS--GTLRI 479

Query: 68  L-VALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDD 126
           L VAL        D G Y+ +A N +G  + +  L         + P F   P+    + 
Sbjct: 480 LRVALH-------DQGQYECQAVNIVGSKSTAAQLIVQTR----VTPVFATVPNDMTVEV 528

Query: 127 GKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGK 186
           G  +   C  Q DP P + W+  G+QV E    KF I   G+     L I D  + D G+
Sbjct: 529 GTDVQIPCSSQGDPLPIITWNKDGIQVTESG--KFHISPHGY-----LAIRDAGLADQGR 581

Query: 187 YKVTAKNELGESNATISLN 205
           Y+  A+N +G S+ ++ L+
Sbjct: 582 YECVARNPIGYSSVSMVLS 600

Xenopus tropicalis (taxid: 8364)

EC: 1

EC: .

EC: 1

EC: 1

EC: .

EC: 1

EC: .

EC: 7

>sp|O01761|UNC89_CAEEL Muscle M-line assembly protein unc-89 OS=Caenorhabditis elegans GN=unc-89 PE=1 SV=3

 Score = 89.0 bits (219), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 64/260 (24%), Positives = 115/260 (44%), Gaps = 22/260 (8%)

Query: 6    DFAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTN 65
            ++AP      + +  + G  +   C++   P+  +VW++    L  D+RT ++    GT 
Sbjct: 5380 EYAPKINPPLEDKTVNGGQPIRLSCKVDAIPRASVVWYKDGLPLRADSRTSIQYEEDGT- 5438

Query: 66   KYLVALELDDVIETDAGLYKVKAKNKMGEV--AASINLNFSREQI--DGLAPTFLKKPSI 121
                 L ++D  E D G Y+  A N  G +  + S+N+   ++++  +G  P F K    
Sbjct: 5439 ---ATLAINDSTEEDIGAYRCVATNAHGTINTSCSVNVKVPKQEVKKEGEEPFFTKGLVD 5495

Query: 122  RQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTI 181
               D G     +C +  DP P + W  +G  ++   R       DG     SL + + T+
Sbjct: 5496 LWADRGDSFTLKCAVTGDPFPEIKWYRNGQLLRNGPRTVIETSPDGS---CSLTVNESTM 5552

Query: 182  EDAGKYKVTAKNELG----ESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDL-- 235
             D G Y+  A+N  G    ++ A + +     + P   EG  P F    + + SD  +  
Sbjct: 5553 SDEGIYRCEAENAHGKAKTQATAHVQMALGKTEKPKMDEGKPPKF----ILELSDMSVSL 5608

Query: 236  -NDIVIECRLVGEPEPTISW 254
             N I +EC++ G P P++ W
Sbjct: 5609 GNVIDLECKVTGLPNPSVKW 5628

Structural component of the muscle M-line. Myofilament lattice assembly begins with positional cues laid down in the basement membrane and muscle cell membrane. UNC-89 responds to these signals, localizes, and then participates in assembling an M-line.

Caenorhabditis elegans (taxid: 6239)

>sp|Q5VST9|OBSCN_HUMAN Obscurin OS=Homo sapiens GN=OBSCN PE=1 SV=3

 Score = 89.0 bits (219), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 71/270 (26%), Positives = 113/270 (41%), Gaps = 30/270 (11%)

Query: 8   APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKY 67
           AP F  +P+      G      CQ++ NP P + W + +  ++   R  +       +  
Sbjct: 9   APRFLTRPKAFVVSVGKDATLSCQIVGNPTPQVSWEKDQQPVAAGARFRL-----AQDGD 63

Query: 68  LVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDG-LAPTFLKKPSIRQEDD 126
           L  L + D+   D+G Y  +A+N +GE  A++ L    E      AP FL +P+  +  +
Sbjct: 64  LYRLTILDLALGDSGQYVCRARNAIGEAFAAVGLQVDAEAACAEQAPHFLLRPTSIRVRE 123

Query: 127 GKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGK 186
           G    F CR+   P P V WS  G ++ E    +  +++ G +  ++L I      D G 
Sbjct: 124 GSEATFRCRVGGSPRPAVSWSKDGRRLGEPDGPRVRVEELGEA--SALRIRAARPRDGGT 181

Query: 187 YKVTAKNELGESNATISLNFDSDDAPV---PGEGTKPVFTE------------RPVTKQS 231
           Y+V A+N LG ++A  +L  DSD A     PG  T  +                P +  S
Sbjct: 182 YEVRAENPLGAASAAAALVVDSDAADTASRPGTSTAALLAHLQRRREAMRAEGAPASPPS 241

Query: 232 DDDLNDIVIE-------CRLVGEPEPTISW 254
                  V E       C + GEP+P   W
Sbjct: 242 TGTRTCTVTEGKHARLSCYVTGEPKPETVW 271

Involved in myofibrillogenesis. Seems to be involved in assembly of myosin into sarcomeric A bands in striated muscle. Isoform 3 together with ANK1 isoform Mu17/Ank1.5 may provide a molecular link between the sarcoplasmic reticulum and myofibrils.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q6PDN3|MYLK_MOUSE Myosin light chain kinase, smooth muscle OS=Mus musculus GN=Mylk PE=1 SV=3

 Score = 88.6 bits (218), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 66/260 (25%), Positives = 108/260 (41%), Gaps = 31/260 (11%)

Query: 8   APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKY 67
           APSF+   +     EG   +  C +   P P + W     Q  +   ++ +         
Sbjct: 501 APSFSSVLKDSVVIEGQDFVLRCSVQGTPAPRVTWLLN-GQPIQFAHSICEAG------- 552

Query: 68  LVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDG-------------LAPT 114
           +  L + D +  D G Y   A+N MG+V+ S  +    ++ +G             +AP 
Sbjct: 553 VAELHIQDALPEDRGTYTCLAENAMGQVSCSATVTVQEKKGEGEREHRLSPARSKPIAPI 612

Query: 115 FLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASL 174
           FL+  S  +  DG ++    ++  +P P VIW H G +++E +   F      HS    L
Sbjct: 613 FLQGLSDLKVMDGSQVTMTVQVSGNPPPEVIWLHDGNEIQESEDFHFEQKGGWHS----L 668

Query: 175 EIIDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDD 234
            I +V  ED G Y   A N  GE      L         P +GT+P F  +P +  +   
Sbjct: 669 CIQEVFPEDTGTYTCEAWNSAGEVRTRAVLTVQE-----PHDGTQPWFISKPRSVTATLG 723

Query: 235 LNDIVIECRLVGEPEPTISW 254
              ++I C + G+P PT+ W
Sbjct: 724 -QSVLISCAIAGDPFPTVHW 742

Calcium/calmodulin-dependent myosin light chain kinase implicated in smooth muscle contraction via phosphorylation of myosin light chains (MLC). Also regulates actin-myosin interaction through a non-kinase activty. Phosphorylates PTK2B/PYK2 and myosin light-chains. Involved in the inflammatory response (e.g. apoptosis, vascular permeability, leukocyte diapedesis), cell motility and morphology, airway hyperreactivity and other activities relevant to asthma. Required for tonic airway smooth muscle contraction that is necessary for physiological and asthmatic airway resistance. Necessary for gastrointestinal motility. Implicated in the regulation of endothelial as well as vascular permeability, probably via the regulation of cytoskeletal rearrangements. In the nervous system it has been shown to control the growth initiation of astrocytic processes in culture and to participate in transmitter release at synapses formed between cultured sympathetic ganglion cells. Critical participant in signaling sequences that result in fibroblast apoptosis. Plays a role in the regulation of epithelial cell survival. Required for epithelial wound healing, especially during actomyosin ring contraction during purse-string wound closure. Mediates RhoA-dependent membrane blebbing. Triggers TRPC5 channel activity in a calcium-dependent signaling, by inducing its subcellular localization at the plasma membrane. Promotes cell migration (including tumor cells) and tumor metastasis. PTK2B/PYK2 activation by phosphorylation mediates ITGB2 activation and is thus essential to trigger neutrophil transmigration during acute lung injury (ALI). May regulate optic nerve head astrocyte migration. Probably involved in mitotic cytoskeletal regulation. Regulates tight junction probably by modulating ZO-1 exchange in the perijunctional actomyosin ring. Mediates burn-induced microvascular barrier injury; triggers endothelial contraction in the development of microvascular hyperpermeability by phosphorylating MLC. Essential for intestinal barrier dysfunction. Mediates Giardia spp.-mediated reduced epithelial barrier function during giardiasis intestinal infection via reorganization of cytoskeletal F-actin and tight junctional ZO-1. Necessary for hypotonicity-induced Ca(2+) entry and subsequent activation of volume-sensitive organic osmolyte/anion channels (VSOAC) in cervical cancer cells.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

EC: 8

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	254
325071197	1174	projectin long variant [Libellula pulche	0.988	0.213	0.751	1e-113
325071195	972	projectin short variant [Libellula pulch	0.988	0.258	0.751	1e-113
325071189	1444	projectin [Pediculus humanus]	0.996	0.175	0.757	1e-113
325071201	1126	projectin long variant [Pachydiplax long	0.988	0.222	0.751	1e-113
325071199	968	projectin short variant [Pachydiplax lon	0.988	0.259	0.751	1e-113
307200527	515	Muscle M-line assembly protein unc-89 [H	0.996	0.491	0.75	1e-111
242010244	8829	titin, putative [Pediculus humanus corpo	0.996	0.028	0.757	1e-111
383852204	8627	PREDICTED: twitchin-like [Megachile rotu	0.996	0.029	0.75	1e-111
345486445	8816	PREDICTED: twitchin-like [Nasonia vitrip	0.996	0.028	0.757	1e-111
189233817	8838	PREDICTED: similar to CG32019-PA [Tribol	0.996	0.028	0.765	1e-110

>gi|325071197|gb|ADY75709.1| projectin long variant [Libellula pulchella]

 Score =  414 bits (1063), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 194/258 (75%), Positives = 225/258 (87%), Gaps = 7/258 (2%)

Query: 3   IAEDFAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPI 62
           +AEDFAPSFTQKPQLRQED+GNRLIFECQLL +PKPDI+WFRG+TQL+ED RT+M+ TP+
Sbjct: 4   VAEDFAPSFTQKPQLRQEDDGNRLIFECQLLASPKPDILWFRGDTQLAEDRRTLMRITPL 63

Query: 63  GTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFS------REQIDGLAPTFL 116
           G NK+LV LELDDVIETDAGLYKVKAKNKMGEV+ASINLNFS        QIDG+APTF 
Sbjct: 64  GANKFLVVLELDDVIETDAGLYKVKAKNKMGEVSASINLNFSPAEAEKARQIDGIAPTFA 123

Query: 117 KKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEI 176
           KKP+IRQE+DGKRLLFECRIQADP P+V WSH+G  VK+  RH+  ++KDGHSYFA+LEI
Sbjct: 124 KKPAIRQEEDGKRLLFECRIQADPQPSVSWSHNGNPVKDSPRHRLVVEKDGHSYFATLEI 183

Query: 177 IDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLN 236
            +VT+EDAGKYKVTAKNELGESNATISLNFDSD+APVP +G KP FTERPV +QSDD   
Sbjct: 184 KNVTVEDAGKYKVTAKNELGESNATISLNFDSDEAPVPADGIKPTFTERPVIRQSDDG-G 242

Query: 237 DIVIECRLVGEPEPTISW 254
            I  ECR+VG+P+PT++W
Sbjct: 243 KITFECRVVGDPKPTVTW 260

Source: Libellula pulchella

Species: Libellula pulchella

Genus: Libellula

Family: Libellulidae

Order: Odonata

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|325071195|gb|ADY75708.1| projectin short variant [Libellula pulchella]

 Score =  413 bits (1062), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 194/258 (75%), Positives = 225/258 (87%), Gaps = 7/258 (2%)

Query: 3   IAEDFAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPI 62
           +AEDFAPSFTQKPQLRQED+GNRLIFECQLL +PKPDI+WFRG+TQL+ED RT+M+ TP+
Sbjct: 4   VAEDFAPSFTQKPQLRQEDDGNRLIFECQLLASPKPDILWFRGDTQLAEDRRTLMRITPL 63

Query: 63  GTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFS------REQIDGLAPTFL 116
           G NK+LV LELDDVIETDAGLYKVKAKNKMGEV+ASINLNFS        QIDG+APTF 
Sbjct: 64  GANKFLVVLELDDVIETDAGLYKVKAKNKMGEVSASINLNFSPAEAEKARQIDGIAPTFA 123

Query: 117 KKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEI 176
           KKP+IRQE+DGKRLLFECRIQADP P+V WSH+G  VK+  RH+  ++KDGHSYFA+LEI
Sbjct: 124 KKPAIRQEEDGKRLLFECRIQADPQPSVSWSHNGNPVKDSPRHRLVVEKDGHSYFATLEI 183

Query: 177 IDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLN 236
            +VT+EDAGKYKVTAKNELGESNATISLNFDSD+APVP +G KP FTERPV +QSDD   
Sbjct: 184 KNVTVEDAGKYKVTAKNELGESNATISLNFDSDEAPVPADGIKPTFTERPVIRQSDDG-G 242

Query: 237 DIVIECRLVGEPEPTISW 254
            I  ECR+VG+P+PT++W
Sbjct: 243 KITFECRVVGDPKPTVTW 260

Source: Libellula pulchella

Species: Libellula pulchella

Genus: Libellula

Family: Libellulidae

Order: Odonata

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|325071189|gb|ADY75705.1| projectin [Pediculus humanus]

 Score =  412 bits (1060), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 197/260 (75%), Positives = 220/260 (84%), Gaps = 7/260 (2%)

Query: 1   MGIAEDFAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTT 60
           MG+AEDFAPSFTQKPQLRQEDEGNRL+FECQLL +PKP+I WFRGET+L ED RTV KT 
Sbjct: 1   MGVAEDFAPSFTQKPQLRQEDEGNRLVFECQLLSSPKPEIHWFRGETELFEDNRTVFKTQ 60

Query: 61  PIGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFS------REQIDGLAPT 114
           PI  NK+LVALELDDV+E DAGLYKVKAKNKMGEVAASINLNFS       +QIDGLAP+
Sbjct: 61  PIENNKFLVALELDDVVEEDAGLYKVKAKNKMGEVAASINLNFSPVDEPQEKQIDGLAPS 120

Query: 115 FLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASL 174
           F KKP+IRQE+DGK+LLFECRIQADP PTV W H GV VK   RHK  +DKDGHSYFA+L
Sbjct: 121 FSKKPAIRQEEDGKKLLFECRIQADPKPTVTWFHDGVLVKNTPRHKILLDKDGHSYFATL 180

Query: 175 EIIDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDD 234
           EI +VT+EDAGKYKVTAKNELGESNATISLNFDSD+APVP +G KP FTERP+ +QSDD 
Sbjct: 181 EIKNVTVEDAGKYKVTAKNELGESNATISLNFDSDEAPVPEDGIKPTFTERPIIRQSDDG 240

Query: 235 LNDIVIECRLVGEPEPTISW 254
              I  ECR  G+P+PTI+W
Sbjct: 241 TK-ITFECRCAGDPKPTITW 259

Source: Pediculus humanus

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|325071201|gb|ADY75711.1| projectin long variant [Pachydiplax longipennis]

 Score =  412 bits (1060), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 194/258 (75%), Positives = 224/258 (86%), Gaps = 7/258 (2%)

Query: 3   IAEDFAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPI 62
           +A+DFAPSFTQKPQLRQED+GNRLIFECQLL +PKPDI+WFRG+TQL+ED RTVM+ TP+
Sbjct: 1   VADDFAPSFTQKPQLRQEDDGNRLIFECQLLASPKPDILWFRGDTQLAEDRRTVMRITPL 60

Query: 63  GTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFS------REQIDGLAPTFL 116
           G NK+LV LELDDVIETDAGLYKVKAKNKMGEV+ASINLNFS        QIDGLAPTF 
Sbjct: 61  GANKFLVVLELDDVIETDAGLYKVKAKNKMGEVSASINLNFSPAEAEKSRQIDGLAPTFA 120

Query: 117 KKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEI 176
           KKP+IRQE+DGKRLLFECRIQADP P+V WSH+G  VK+  RH+  ++KDGHSYFA+LEI
Sbjct: 121 KKPAIRQEEDGKRLLFECRIQADPQPSVSWSHNGNPVKDSPRHRLVVEKDGHSYFATLEI 180

Query: 177 IDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLN 236
            +VT+EDAGKYKVTAKNELGESNATISLNFD D+APVP +G KP FTERPV +QSDD   
Sbjct: 181 KNVTVEDAGKYKVTAKNELGESNATISLNFDCDEAPVPADGIKPTFTERPVIRQSDDG-G 239

Query: 237 DIVIECRLVGEPEPTISW 254
            I  ECR+VG+P+PT++W
Sbjct: 240 KITFECRVVGDPKPTVTW 257

Source: Pachydiplax longipennis

Species: Pachydiplax longipennis

Genus: Pachydiplax

Family: Libellulidae

Order: Odonata

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|325071199|gb|ADY75710.1| projectin short variant [Pachydiplax longipennis]

 Score =  412 bits (1059), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 194/258 (75%), Positives = 224/258 (86%), Gaps = 7/258 (2%)

Query: 3   IAEDFAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPI 62
           +A+DFAPSFTQKPQLRQED+GNRLIFECQLL +PKPDI+WFRG+TQL+ED RTVM+ TP+
Sbjct: 1   VADDFAPSFTQKPQLRQEDDGNRLIFECQLLASPKPDILWFRGDTQLAEDRRTVMRITPL 60

Query: 63  GTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFS------REQIDGLAPTFL 116
           G NK+LV LELDDVIETDAGLYKVKAKNKMGEV+ASINLNFS        QIDGLAPTF 
Sbjct: 61  GANKFLVVLELDDVIETDAGLYKVKAKNKMGEVSASINLNFSPAEAEKSRQIDGLAPTFA 120

Query: 117 KKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEI 176
           KKP+IRQE+DGKRLLFECRIQADP P+V WSH+G  VK+  RH+  ++KDGHSYFA+LEI
Sbjct: 121 KKPAIRQEEDGKRLLFECRIQADPQPSVSWSHNGNPVKDSPRHRLVVEKDGHSYFATLEI 180

Query: 177 IDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLN 236
            +VT+EDAGKYKVTAKNELGESNATISLNFD D+APVP +G KP FTERPV +QSDD   
Sbjct: 181 KNVTVEDAGKYKVTAKNELGESNATISLNFDCDEAPVPADGIKPTFTERPVIRQSDDG-G 239

Query: 237 DIVIECRLVGEPEPTISW 254
            I  ECR+VG+P+PT++W
Sbjct: 240 KITFECRVVGDPKPTVTW 257

Source: Pachydiplax longipennis

Species: Pachydiplax longipennis

Genus: Pachydiplax

Family: Libellulidae

Order: Odonata

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307200527|gb|EFN80689.1| Muscle M-line assembly protein unc-89 [Harpegnathos saltator]

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 195/260 (75%), Positives = 221/260 (85%), Gaps = 7/260 (2%)

Query: 1   MGIAEDFAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTT 60
           MG+A+DFAPSFTQKPQLRQED+GNRLIFECQL+ +PKP+I WFRGET+LS+D RT  K  
Sbjct: 1   MGVADDFAPSFTQKPQLRQEDDGNRLIFECQLVSSPKPEIAWFRGETELSQDDRTNFKMQ 60

Query: 61  PIGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFS------REQIDGLAPT 114
            +GTNK+LV LELDDVIETDAGLYKVKAKNKMGEVAASINLNFS       +QIDG+APT
Sbjct: 61  SVGTNKFLVVLELDDVIETDAGLYKVKAKNKMGEVAASINLNFSPMDEPREKQIDGIAPT 120

Query: 115 FLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASL 174
           F KKP+IRQEDDGKRLLFECRI ADP P V W H G  VK+  RHK ++DKDGHSYFA+L
Sbjct: 121 FAKKPAIRQEDDGKRLLFECRITADPTPKVTWFHDGNMVKDSPRHKLTVDKDGHSYFATL 180

Query: 175 EIIDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDD 234
           EI +VT+EDAGKYKVTAKNELGESNATISLNFDSD+APVP +G KP FTERPV +QSDD 
Sbjct: 181 EIKNVTVEDAGKYKVTAKNELGESNATISLNFDSDEAPVPEDGIKPTFTERPVIRQSDDG 240

Query: 235 LNDIVIECRLVGEPEPTISW 254
            N I  ECRLVG+P+P++ W
Sbjct: 241 -NTITFECRLVGDPKPSVKW 259

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242010244|ref|XP_002425880.1| titin, putative [Pediculus humanus corporis] gi|212509846|gb|EEB13142.1| titin, putative [Pediculus humanus corporis]

 Score =  406 bits (1044), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 197/260 (75%), Positives = 220/260 (84%), Gaps = 7/260 (2%)

Query: 1   MGIAEDFAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTT 60
           MG+AEDFAPSFTQKPQLRQEDEGNRL+FECQLL +PKP+I WFRGET+L ED RTV KT 
Sbjct: 1   MGVAEDFAPSFTQKPQLRQEDEGNRLVFECQLLSSPKPEIHWFRGETELFEDNRTVFKTQ 60

Query: 61  PIGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFS------REQIDGLAPT 114
           PI  NK+LVALELDDV+E DAGLYKVKAKNKMGEVAASINLNFS       +QIDGLAP+
Sbjct: 61  PIENNKFLVALELDDVVEEDAGLYKVKAKNKMGEVAASINLNFSPVDEPQEKQIDGLAPS 120

Query: 115 FLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASL 174
           F KKP+IRQE+DGK+LLFECRIQADP PTV W H GV VK   RHK  +DKDGHSYFA+L
Sbjct: 121 FSKKPAIRQEEDGKKLLFECRIQADPKPTVTWFHDGVLVKNTPRHKILLDKDGHSYFATL 180

Query: 175 EIIDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDD 234
           EI +VT+EDAGKYKVTAKNELGESNATISLNFDSD+APVP +G KP FTERP+ +QSDD 
Sbjct: 181 EIKNVTVEDAGKYKVTAKNELGESNATISLNFDSDEAPVPEDGIKPTFTERPIIRQSDDG 240

Query: 235 LNDIVIECRLVGEPEPTISW 254
              I  ECR  G+P+PTI+W
Sbjct: 241 TK-ITFECRCAGDPKPTITW 259

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383852204|ref|XP_003701618.1| PREDICTED: twitchin-like [Megachile rotundata]

 Score =  405 bits (1042), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 195/260 (75%), Positives = 221/260 (85%), Gaps = 7/260 (2%)

Query: 1   MGIAEDFAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTT 60
           MG+A+DFAPSFTQKPQLRQED+GNRLIFECQL+ +PKP+I W+RGET+LS+D RT  K  
Sbjct: 1   MGVADDFAPSFTQKPQLRQEDDGNRLIFECQLISSPKPEISWYRGETELSQDARTNFKMQ 60

Query: 61  PIGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFS------REQIDGLAPT 114
            IGTNK+LV LELDDVIETDAGLYKVKAKNKMGEVAASINLNFS       +QIDG+APT
Sbjct: 61  SIGTNKFLVVLELDDVIETDAGLYKVKAKNKMGEVAASINLNFSPVDEPREKQIDGIAPT 120

Query: 115 FLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASL 174
           F KKP+IRQEDDGKRLLFECRI ADP P V W H G  VK+  RHK ++DKDGHSYFA+L
Sbjct: 121 FAKKPAIRQEDDGKRLLFECRITADPTPKVTWFHDGNMVKDSPRHKLTVDKDGHSYFATL 180

Query: 175 EIIDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDD 234
           EI +VT+EDAGKYKVTAKNELGESNATISLNFDSD+APVP +G KP FTERPV +QSDD 
Sbjct: 181 EIKNVTVEDAGKYKVTAKNELGESNATISLNFDSDEAPVPEDGIKPTFTERPVIRQSDDG 240

Query: 235 LNDIVIECRLVGEPEPTISW 254
            N I  ECRLVG+P+P++ W
Sbjct: 241 -NTITFECRLVGDPKPSVKW 259

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345486445|ref|XP_003425477.1| PREDICTED: twitchin-like [Nasonia vitripennis]

 Score =  405 bits (1042), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 197/260 (75%), Positives = 218/260 (83%), Gaps = 7/260 (2%)

Query: 1   MGIAEDFAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTT 60
           MG+A+DFAPSFTQKPQLRQEDEGNRLIFECQL+  PKP+I WFRGETQL+ED RT  K  
Sbjct: 1   MGVADDFAPSFTQKPQLRQEDEGNRLIFECQLVSAPKPEITWFRGETQLAEDDRTNFKIQ 60

Query: 61  PIGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFS------REQIDGLAPT 114
            IGTNK+LV LELDDVIETDAGLYKVKAKNKMGEVAASINLNFS       +QIDG+APT
Sbjct: 61  SIGTNKFLVVLELDDVIETDAGLYKVKAKNKMGEVAASINLNFSPVDEPREKQIDGIAPT 120

Query: 115 FLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASL 174
           F KKPSIRQEDDGKRL+FECRI ADP P V W H G  V +  RHK ++DKDGHSYFASL
Sbjct: 121 FAKKPSIRQEDDGKRLVFECRITADPTPKVSWFHDGDAVSDSPRHKLTVDKDGHSYFASL 180

Query: 175 EIIDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDD 234
           EI +VT+EDAGKYKVTAKNELGESNATISLNFDSD+APVP +G KP FTERPV +QSDD 
Sbjct: 181 EIKNVTVEDAGKYKVTAKNELGESNATISLNFDSDEAPVPDDGVKPTFTERPVIRQSDDG 240

Query: 235 LNDIVIECRLVGEPEPTISW 254
            N I  ECRL G+P+P++ W
Sbjct: 241 -NTITFECRLAGDPKPSVKW 259

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189233817|ref|XP_971502.2| PREDICTED: similar to CG32019-PA [Tribolium castaneum]

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 199/260 (76%), Positives = 217/260 (83%), Gaps = 7/260 (2%)

Query: 1   MGIAEDFAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTT 60
           MG+AEDFAPSFTQKPQLRQED+GN+LIFECQLL NPKPDI WFR +T LSED+RT +K  
Sbjct: 1   MGVAEDFAPSFTQKPQLRQEDDGNKLIFECQLLSNPKPDIQWFRSDTLLSEDSRTNIKIQ 60

Query: 61  PIGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFS------REQIDGLAPT 114
            IGTNK+LV LELDDVIETDAGLYKVKAKNKMGEVAASINLNFS       +QIDGLAPT
Sbjct: 61  SIGTNKFLVVLELDDVIETDAGLYKVKAKNKMGEVAASINLNFSPMDEPKEKQIDGLAPT 120

Query: 115 FLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASL 174
           F KKPSIRQE+DGKRLLFECRIQADP PTV W H+   V E  RHK  IDKDGHSYFA+L
Sbjct: 121 FAKKPSIRQEEDGKRLLFECRIQADPRPTVSWFHNANPVHETPRHKLRIDKDGHSYFATL 180

Query: 175 EIIDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDD 234
           EI +VT+EDAGKYKVTAKNELGESNATISLNFDSD+APVP  G KP FTERPV +Q+DD 
Sbjct: 181 EIKNVTVEDAGKYKVTAKNELGESNATISLNFDSDEAPVPDNGIKPTFTERPVIRQTDDG 240

Query: 235 LNDIVIECRLVGEPEPTISW 254
              I  ECR VG+P+P I W
Sbjct: 241 TK-ITFECRCVGDPKPVIQW 259

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	254
FB|FBgn0005666	8933	bt "bent" [Drosophila melanoga	0.996	0.028	0.698	2.9e-96
WB|WBGene00006759	7158	unc-22 [Caenorhabditis elegans	0.870	0.030	0.327	1.9e-30
WB|WBGene00001000	640	dim-1 [Caenorhabditis elegans	0.913	0.362	0.305	9e-23
FB|FBgn0086906	18	sls "sallimus" [Drosophila mel	0.933	13.16	0.300	1.7e-21
UNIPROTKB|O97791	2000	titin "Titin" [Oryctolagus cun	0.830	0.105	0.252	4.3e-19
UNIPROTKB|F1NQ78	1906	MYLK "Uncharacterized protein"	0.913	0.121	0.281	2.6e-20
UNIPROTKB|P11799	1906	P11799 "Myosin light chain kin	0.913	0.121	0.281	2.6e-20
UNIPROTKB|F1PIF6	1960	MYLK "Uncharacterized protein"	0.811	0.105	0.296	1.7e-18
UNIPROTKB|Q5VST9	7968	OBSCN "Obscurin" [Homo sapiens	0.803	0.025	0.288	3.1e-18
UNIPROTKB|H3BPX2	8678	OBSCN "Obscurin" [Homo sapiens	0.803	0.023	0.288	3.7e-18

FB|FBgn0005666 bt "bent" [Drosophila melanogaster (taxid:7227)]

 Score = 978 (349.3 bits), Expect = 2.9e-96, Sum P(2) = 2.9e-96
 Identities = 183/262 (69%), Positives = 214/262 (81%)

Query:     1 MGIAEDFAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTT 60
             MG+AEDFAPSF +KPQL QED+GNRLIFECQLL +PKPDI WFR + ++ ED RT  K  
Sbjct:     1 MGVAEDFAPSFVKKPQLHQEDDGNRLIFECQLLSSPKPDIEWFRSDNKVVEDVRTKFKIQ 60

Query:    61 PIGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFS------REQIDGLAPT 114
             P+G NKY V LELDDV+ETDAGLYKVKAKNK GEV+ASINLNF+       +QIDG APT
Sbjct:    61 PVGENKYTVVLELDDVVETDAGLYKVKAKNKSGEVSASINLNFTPADEPKEKQIDGFAPT 120

Query:   115 FLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASL 174
             F KKP+IRQE+DGKRLLFECR+ ADP P +IW H+G  VKE +RHK ++DKD HSYFA+L
Sbjct:   121 FAKKPAIRQEEDGKRLLFECRVNADPIPAIIWFHNGAAVKESERHKITVDKDVHSYFATL 180

Query:   175 EIIDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVP--GEGTKPVFTERPVTKQSD 232
             EI++VT+EDAGKYKV AKNELGESNATISLNFDSD+APVP   EG KP FTERPV +QS+
Sbjct:   181 EILNVTVEDAGKYKVNAKNELGESNATISLNFDSDEAPVPESAEGIKPTFTERPVIRQSE 240

Query:   233 DDLNDIVIECRLVGEPEPTISW 254
             D  N +  ECR VG+P PT++W
Sbjct:   241 DGGN-VTFECRCVGDPTPTVTW 261

GO:0005737 "cytoplasm" evidence=ISS

GO:0004687 "myosin light chain kinase activity" evidence=NAS

GO:0005200 "structural constituent of cytoskeleton" evidence=ISS

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;NAS

GO:0006468 "protein phosphorylation" evidence=IEA;NAS

GO:0007498 "mesoderm development" evidence=IEP

GO:0005524 "ATP binding" evidence=IEA

GO:0008307 "structural constituent of muscle" evidence=IDA

GO:0030018 "Z disc" evidence=IDA

GO:0045214 "sarcomere organization" evidence=IMP

WB|WBGene00006759 unc-22 [Caenorhabditis elegans (taxid:6239)]

 Score = 338 (124.0 bits), Expect = 1.9e-30, Sum P(3) = 1.9e-30
 Identities = 74/226 (32%), Positives = 115/226 (50%)

Query:     8 APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKY 67
             AP FTQKP ++Q   G+ L+ EC L  +P+P I W      L    R V   TP+G + Y
Sbjct:     4 APRFTQKPSIQQTPTGD-LLMECHLEADPQPTIAWQHSGNLLEPSGRVVQTLTPLGGSLY 62

Query:    68 LVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSR---EQIDGLAPTFLKKPSIRQE 124
                L + +    D G YK  A+N++GE  A+INLNF+    ++     P+F+ KP I  +
Sbjct:    63 KATLVIKEPNAGDGGAYKCTARNQLGESNANINLNFAGAGGDEAKSRGPSFVGKPRIIPK 122

Query:   125 DDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKR-HKFSIDKDGHSYFASLEIIDVTIED 183
             D G  ++ EC++++   P   W   GV +      H    D    +Y   LEI   +  D
Sbjct:   123 DGGALIVMECKVKSASTPVAKWMKDGVPLSMGGLYHAIFSDLGDQTYLCQLEIRGPSSSD 182

Query:   184 AGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTK 229
             AG+Y+   +N+ GE+NA ++LNF+  D     E  +   + RP ++
Sbjct:   183 AGQYRCNIRNDQGETNANLALNFEEPDPSERQERKRSTASPRPSSR 228

GO:0004672 "protein kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0004812 "aminoacyl-tRNA ligase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006418 "tRNA aminoacylation for protein translation" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0040011 "locomotion" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

GO:0040027 "negative regulation of vulval development" evidence=IMP

GO:0040018 "positive regulation of multicellular organism growth" evidence=IMP

GO:0040015 "negative regulation of multicellular organism growth" evidence=IMP

GO:0030163 "protein catabolic process" evidence=IMP

GO:0031672 "A band" evidence=IDA

WB|WBGene00001000 dim-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 272 (100.8 bits), Expect = 9.0e-23, P = 9.0e-23
 Identities = 79/259 (30%), Positives = 128/259 (49%)

Query:     8 APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKY 67
             AP F Q+P  RQ D+G+ L  EC +  NP P + W+    ++    R        G++ Y
Sbjct:   322 APHFPQQPVARQNDDGS-LELECFVDANPTPQVKWYYDNKEVENSGRFSANLANKGSDSY 380

Query:    68 LVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLA-PTFLKKPSIRQEDD 126
                L + ++ + DAG Y+    N  G+  A+ NL     ++ G + PTF++KP I   DD
Sbjct:   381 SAILTIKELADADAGAYRCAIVNPHGKGNANFNL-----KLTGFSSPTFVEKPQISSRDD 435

Query:   127 GKRLLFECRIQADPAPTVIWSH---SGVQ--VKEDKRHKFSIDK--DGHSYFASLEIIDV 179
             G+ ++ E R ++   PT +W      G +  +    R K ++ K   G+ Y+++LEI + 
Sbjct:   436 GQVMVMEFRAKSILEPTFVWQKLVGGGAEEIIANSDRIK-AVKKLEAGNVYYSALEIKEP 494

Query:   180 TIE-DAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDI 238
             T + DAG++  T KNE G+  AT ++ F+     VP EG  P FT +P   Q      + 
Sbjct:   495 TKDKDAGQFICTVKNESGKLTATFTVKFE-----VP-EGA-PSFTRKPQILQQTSAGGEP 547

Query:   239 VIECRLVG---EPEPTISW 254
              I C  +G      P ++W
Sbjct:   548 AI-CFDIGYSARMNPQVTW 565

GO:0071688 "striated muscle myosin thick filament assembly" evidence=IMP

FB|FBgn0086906 sls "sallimus" [Drosophila melanogaster (taxid:7227)]

 Score = 277 (102.6 bits), Expect = 1.7e-21, P = 1.7e-21
 Identities = 76/253 (30%), Positives = 115/253 (45%)

Query:     3 IAEDFAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVW-FRGETQLSEDTRTVMKTTP 61
             I E   P+F++KP+ +  DE   +I EC+L+  P+PDIVW F GE    E+ + V   T 
Sbjct: 16619 ILEGIPPTFSKKPKAQYVDENTNVILECRLVAVPEPDIVWTFNGEDIDEEEIKNVRIVTE 16678

Query:    62 IGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSI 121
                + Y   + +  V ++  G Y+V A N+ GE    I L       D  AP  L+    
Sbjct: 16679 SDMHMYCSVVHISKVKKSQEGTYEVIATNREGEARLPITLKV--RTTDKEAPQILEPLRN 16736

Query:   122 RQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTI 181
                 +G+ ++   +I  +P P V W   G  VK  K      DKD H+    L +I    
Sbjct: 16737 MVIREGESVVLSTQIVGNPPPKVTWYKDGKPVKNAKS-----DKDLHT----LTLITPQK 16787

Query:   182 EDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIE 241
              + G+Y V A N LG    T +L  +    P  G    P+F ER   +Q+     +I + 
Sbjct: 16788 SEKGEYTVKAVNPLGSVETTANLTIEE---PAGGNAEPPLFVER-FEEQNVPQKGEIRLP 16843

Query:   242 CRLVGEPEPTISW 254
              ++ G P P + W
Sbjct: 16844 AKVSGNPVPEVQW 16856

GO:0030017 "sarcomere" evidence=IDA

GO:0000794 "condensed nuclear chromosome" evidence=IDA

GO:0004687 "myosin light chain kinase activity" evidence=ISS

GO:0003779 "actin binding" evidence=IMP;IDA

GO:0030018 "Z disc" evidence=IMP;IDA

GO:0008307 "structural constituent of muscle" evidence=IMP

GO:0016203 "muscle attachment" evidence=IMP

GO:0040011 "locomotion" evidence=IMP

GO:0045214 "sarcomere organization" evidence=IGI;IMP

GO:0007519 "skeletal muscle tissue development" evidence=IMP

GO:0007520 "myoblast fusion" evidence=IMP

GO:0007076 "mitotic chromosome condensation" evidence=IMP

GO:0007062 "sister chromatid cohesion" evidence=IMP

GO:0007498 "mesoderm development" evidence=IEP

GO:0007517 "muscle organ development" evidence=TAS

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IDA

GO:0035206 "regulation of hemocyte proliferation" evidence=IMP

UNIPROTKB|O97791 titin "Titin" [Oryctolagus cuniculus (taxid:9986)]

 Score = 192 (72.6 bits), Expect = 4.3e-19, Sum P(2) = 4.3e-19
 Identities = 56/222 (25%), Positives = 100/222 (45%)

Query:     8 APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKY 67
             AP+FTQ  Q     EG+   FE  +   P P++ WFR    +S  T   +    I  +  
Sbjct:     5 APTFTQPLQSVVVLEGSAATFEAHVSGFPVPEVSWFRDGQVISTST---LPGVQISFSDG 61

Query:    68 LVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDG 127
                L +  V + ++G Y ++A N  G+  ++  L  + E      P F+++        G
Sbjct:    62 RAKLTIPAVTKANSGRYSLRATNGSGQATSTAELLVTAETAP---PNFVQRLQSMTVRQG 118

Query:   128 KRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKY 187
              ++  + R+   P P V +   G +++      F I ++G  Y  SL I +   ED+G Y
Sbjct:   119 SQVRLQVRVTGIPTPVVKFYRDGAEIQSSL--DFQISQEGDLY--SLLIAEAYPEDSGTY 174

Query:   188 KVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTK 229
              V A N +G + +T  L    ++  VP + TK + +   +++
Sbjct:   175 SVNATNSVGRATSTAELLVQGEEV-VPAKRTKTIVSTAQISE 215

GO:0031433 "telethonin binding" evidence=IPI

UNIPROTKB|F1NQ78 MYLK "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 256 (95.2 bits), Expect = 2.6e-20, P = 2.6e-20
 Identities = 74/263 (28%), Positives = 120/263 (45%)

Query:     5 EDFAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGT 64
             E+ AP F+   +     EG   + +C +   P P+I W   E  +    +    T   G 
Sbjct:   524 EEVAPCFSSVLKGCTVSEGQDFVLQCYVGGVPVPEITWLLNEQPI----QYAHSTFEAGV 579

Query:    65 NKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLNF----SREQIDG---------L 111
              K    L + D +  D G+Y   A+N  G  + S  +      S ++ +G          
Sbjct:   580 AK----LTVQDALPEDDGIYTCLAENNAGRASCSAQVTVKEKKSSKKAEGTQAAKLNKTF 635

Query:   112 APTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYF 171
             AP FLK  +  +  DG +++    + A+P P +IW H+G +++E +   F  +K G+ Y 
Sbjct:   636 APIFLKGLTDLKVMDGSQVIMTVEVSANPCPEIIWLHNGKEIQETE--DFHFEKKGNEY- 692

Query:   172 ASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQS 231
              SL I +V  ED GKY   A NELGE+    +L         P +G +P F  +P +  +
Sbjct:   693 -SLYIQEVFPEDTGKYTCEAWNELGETQTQATLTVQE-----PQDGIQPWFISKPRSVTA 746

Query:   232 DDDLNDIVIECRLVGEPEPTISW 254
                 N ++I C + G+P PT+ W
Sbjct:   747 AAGQN-VLISCAIAGDPFPTVHW 768

GO:0005524 "ATP binding" evidence=IEA

GO:0001725 "stress fiber" evidence=IEA

GO:0004687 "myosin light chain kinase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0030027 "lamellipodium" evidence=IEA

GO:0030335 "positive regulation of cell migration" evidence=IEA

GO:0032060 "bleb assembly" evidence=IEA

GO:0032154 "cleavage furrow" evidence=IEA

GO:0051928 "positive regulation of calcium ion transport" evidence=IEA

GO:0060414 "aorta smooth muscle tissue morphogenesis" evidence=IEA

GO:0071476 "cellular hypotonic response" evidence=IEA

GO:0090303 "positive regulation of wound healing" evidence=IEA

UNIPROTKB|P11799 P11799 "Myosin light chain kinase, smooth muscle" [Gallus gallus (taxid:9031)]

 Score = 256 (95.2 bits), Expect = 2.6e-20, P = 2.6e-20
 Identities = 74/263 (28%), Positives = 120/263 (45%)

Query:     5 EDFAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGT 64
             E+ AP F+   +     EG   + +C +   P P+I W   E  +    +    T   G 
Sbjct:   524 EEVAPCFSSVLKGCTVSEGQDFVLQCYVGGVPVPEITWLLNEQPI----QYAHSTFEAGV 579

Query:    65 NKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLNF----SREQIDG---------L 111
              K    L + D +  D G+Y   A+N  G  + S  +      S ++ +G          
Sbjct:   580 AK----LTVQDALPEDDGIYTCLAENNAGRASCSAQVTVKEKKSSKKAEGTQAAKLNKTF 635

Query:   112 APTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYF 171
             AP FLK  +  +  DG +++    + A+P P +IW H+G +++E +   F  +K G+ Y 
Sbjct:   636 APIFLKGLTDLKVMDGSQVIMTVEVSANPCPEIIWLHNGKEIQETE--DFHFEKKGNEY- 692

Query:   172 ASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQS 231
              SL I +V  ED GKY   A NELGE+    +L         P +G +P F  +P +  +
Sbjct:   693 -SLYIQEVFPEDTGKYTCEAWNELGETQTQATLTVQE-----PQDGIQPWFISKPRSVTA 746

Query:   232 DDDLNDIVIECRLVGEPEPTISW 254
                 N ++I C + G+P PT+ W
Sbjct:   747 AAGQN-VLISCAIAGDPFPTVHW 768

GO:0005516 "calmodulin binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0004687 "myosin light chain kinase activity" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0001725 "stress fiber" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0030027 "lamellipodium" evidence=IEA

GO:0030335 "positive regulation of cell migration" evidence=IEA

GO:0032060 "bleb assembly" evidence=IEA

GO:0032154 "cleavage furrow" evidence=IEA

GO:0051928 "positive regulation of calcium ion transport" evidence=IEA

GO:0060414 "aorta smooth muscle tissue morphogenesis" evidence=IEA

GO:0071476 "cellular hypotonic response" evidence=IEA

GO:0090303 "positive regulation of wound healing" evidence=IEA

UNIPROTKB|F1PIF6 MYLK "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 225 (84.3 bits), Expect = 1.7e-18, Sum P(2) = 1.7e-18
 Identities = 65/219 (29%), Positives = 97/219 (44%)

Query:     8 APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRG--ETQLSEDTRTVMKTTPIGTN 65
             AP F Q     +  +G+++    Q+  NP P+++W     E Q SED     +    GT 
Sbjct:   624 APLFLQGLSDLKVMDGSQVTMTVQVSGNPPPEVIWLHNGNEIQESEDFHFEQR----GTQ 679

Query:    66 KYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQED 125
               L    + +V   D G Y  +A N  GEV     L     Q DG  P F+ KP      
Sbjct:   680 HSLC---IQEVFPEDTGTYTCEAWNSAGEVRTQAVLMVQEPQ-DGTQPWFISKPRSLTAS 735

Query:   126 DGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAG 185
              G+ +L  C I  DP PTV W   G  + +D  H F + ++   +  +L + +V    AG
Sbjct:   736 LGQTVLISCAIAGDPFPTVHWLRDGKALSKDSGH-FEVLQNEDVF--TLVLKNVQPWHAG 792

Query:   186 KYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTE 224
             +Y++  KN +GE +  +SL   S     P  G +P   E
Sbjct:   793 QYEIQLKNRVGECSCQVSLMLQSSPTGAPLRGREPASCE 831

GO:0005524 "ATP binding" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

UNIPROTKB|Q5VST9 OBSCN "Obscurin" [Homo sapiens (taxid:9606)]

 Score = 227 (85.0 bits), Expect = 3.1e-18, Sum P(2) = 3.1e-18
 Identities = 62/215 (28%), Positives = 99/215 (46%)

Query:     8 APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKY 67
             AP F  +P+      G      CQ++ NP P + W + +  ++   R   +    G    
Sbjct:     9 APRFLTRPKAFVVSVGKDATLSCQIVGNPTPQVSWEKDQQPVAAGAR--FRLAQDGD--- 63

Query:    68 LVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDG-LAPTFLKKPSIRQEDD 126
             L  L + D+   D+G Y  +A+N +GE  A++ L    E      AP FL +P+  +  +
Sbjct:    64 LYRLTILDLALGDSGQYVCRARNAIGEAFAAVGLQVDAEAACAEQAPHFLLRPTSIRVRE 123

Query:   127 GKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGK 186
             G    F CR+   P P V WS  G ++ E    +  +++ G +  ++L I      D G 
Sbjct:   124 GSEATFRCRVGGSPRPAVSWSKDGRRLGEPDGPRVRVEELGEA--SALRIRAARPRDGGT 181

Query:   187 YKVTAKNELGESNATISLNFDSDDAPV---PGEGT 218
             Y+V A+N LG ++A  +L  DSD A     PG  T
Sbjct:   182 YEVRAENPLGAASAAAALVVDSDAADTASRPGTST 216

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005089 "Rho guanyl-nucleotide exchange factor activity" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

GO:0035023 "regulation of Rho protein signal transduction" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005516 "calmodulin binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0005829 "cytosol" evidence=TAS

GO:0006915 "apoptotic process" evidence=TAS

GO:0007264 "small GTPase mediated signal transduction" evidence=TAS

GO:0048011 "neurotrophin TRK receptor signaling pathway" evidence=TAS

GO:0051056 "regulation of small GTPase mediated signal transduction" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0030016 "myofibril" evidence=NAS

GO:0031432 "titin binding" evidence=IPI

GO:0030018 "Z disc" evidence=ISS

GO:0031430 "M band" evidence=ISS

GO:0008307 "structural constituent of muscle" evidence=NAS

GO:0030506 "ankyrin binding" evidence=IPI

GO:0045214 "sarcomere organization" evidence=TAS

GO:0034613 "cellular protein localization" evidence=ISS

UNIPROTKB|H3BPX2 OBSCN "Obscurin" [Homo sapiens (taxid:9606)]

 Score = 227 (85.0 bits), Expect = 3.7e-18, Sum P(2) = 3.7e-18
 Identities = 62/215 (28%), Positives = 99/215 (46%)

Query:     8 APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKY 67
             AP F  +P+      G      CQ++ NP P + W + +  ++   R   +    G    
Sbjct:     9 APRFLTRPKAFVVSVGKDATLSCQIVGNPTPQVSWEKDQQPVAAGAR--FRLAQDGD--- 63

Query:    68 LVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDG-LAPTFLKKPSIRQEDD 126
             L  L + D+   D+G Y  +A+N +GE  A++ L    E      AP FL +P+  +  +
Sbjct:    64 LYRLTILDLALGDSGQYVCRARNAIGEAFAAVGLQVDAEAACAEQAPHFLLRPTSIRVRE 123

Query:   127 GKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGK 186
             G    F CR+   P P V WS  G ++ E    +  +++ G +  ++L I      D G 
Sbjct:   124 GSEATFRCRVGGSPRPAVSWSKDGRRLGEPDGPRVRVEELGEA--SALRIRAARPRDGGT 181

Query:   187 YKVTAKNELGESNATISLNFDSDDAPV---PGEGT 218
             Y+V A+N LG ++A  +L  DSD A     PG  T
Sbjct:   182 YEVRAENPLGAASAAAALVVDSDAADTASRPGTST 216

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005089 "Rho guanyl-nucleotide exchange factor activity" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0035023 "regulation of Rho protein signal transduction" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	254
pfam07679	90	pfam07679, I-set, Immunoglobulin I-set domain	4e-20
pfam07679	90	pfam07679, I-set, Immunoglobulin I-set domain	4e-15
cd00096	74	cd00096, Ig, Immunoglobulin domain	2e-12
cd04969	73	cd04969, Ig5_Contactin_like, Fifth Ig domain of co	8e-11
smart00410	85	smart00410, IG_like, Immunoglobulin like	9e-11
smart00409	85	smart00409, IG, Immunoglobulin	9e-11
cd05746	69	cd05746, Ig4_Peroxidasin, Fourth immunoglobulin (I	2e-10
cd05748	74	cd05748, Ig_Titin_like, Immunoglobulin (Ig)-like d	3e-10
smart00408	63	smart00408, IGc2, Immunoglobulin C-2 Type	4e-09
cd05747	92	cd05747, Ig5_Titin_like, M5, fifth immunoglobulin	5e-09
smart00408	63	smart00408, IGc2, Immunoglobulin C-2 Type	2e-08
cd05891	92	cd05891, Ig_M-protein_C, C-terminal immunoglobulin	2e-08
cd05725	69	cd05725, Ig3_Robo, Third immunoglobulin (Ig)-like	4e-08
cd05737	92	cd05737, Ig_Myomesin_like_C, C-temrinal immunoglob	1e-07
cd05744	75	cd05744, Ig_Myotilin_C_like, Immunoglobulin (Ig)-l	2e-07
cd00096	74	cd00096, Ig, Immunoglobulin domain	3e-07
cd05893	75	cd05893, Ig_Palladin_C, C-terminal immunoglobulin	3e-07
cd05852	73	cd05852, Ig5_Contactin-1, Fifth Ig domain of conta	1e-06
cd05730	95	cd05730, Ig3_NCAM-1_like, Third immunoglobulin (Ig	3e-06
cd05745	74	cd05745, Ig3_Peroxidasin, Third immunoglobulin (Ig	3e-06
cd05855	79	cd05855, Ig_TrkB_d5, Fifth domain (immunoglobulin-	9e-06
cd05745	74	cd05745, Ig3_Peroxidasin, Third immunoglobulin (Ig	1e-05
smart00410	85	smart00410, IG_like, Immunoglobulin like	2e-05
smart00409	85	smart00409, IG, Immunoglobulin	2e-05
cd04972	90	cd04972, Ig_TrkABC_d4, Fourth domain (immunoglobul	2e-05
cd04976	71	cd04976, Ig2_VEGFR, Second immunoglobulin (Ig)-lik	4e-05
cd05731	71	cd05731, Ig3_L1-CAM_like, Third immunoglobulin (Ig	4e-05
cd05894	86	cd05894, Ig_C5_MyBP-C, C5 immunoglobulin (Ig) doma	6e-05
cd05748	74	cd05748, Ig_Titin_like, Immunoglobulin (Ig)-like d	9e-05
cd05891	92	cd05891, Ig_M-protein_C, C-terminal immunoglobulin	2e-04
cd05764	74	cd05764, Ig_2, Subgroup of the immunoglobulin (Ig)	2e-04
cd05737	92	cd05737, Ig_Myomesin_like_C, C-temrinal immunoglob	3e-04
cd05754	85	cd05754, Ig3_Perlecan_like, Third immunoglobulin (	3e-04
cd05893	75	cd05893, Ig_Palladin_C, C-terminal immunoglobulin	4e-04
cd05732	96	cd05732, Ig5_NCAM-1_like, Fifth immunoglobulin (Ig	4e-04
cd04971	81	cd04971, Ig_TrKABC_d5, Fifth domain (immunoglobuli	4e-04
cd04971	81	cd04971, Ig_TrKABC_d5, Fifth domain (immunoglobuli	6e-04
cd05744	75	cd05744, Ig_Myotilin_C_like, Immunoglobulin (Ig)-l	7e-04
cd04969	73	cd04969, Ig5_Contactin_like, Fifth Ig domain of co	8e-04
cd05723	71	cd05723, Ig4_Neogenin, Fourth immunoglobulin (Ig)-	9e-04
pfam00047	62	pfam00047, ig, Immunoglobulin domain	0.001
cd05729	85	cd05729, Ig2_FGFR_like, Second immunoglobulin (Ig)	0.001
pfam13895	80	pfam13895, Ig_2, Immunoglobulin domain	0.001
cd07702	72	cd07702, Ig2_VEGFR-1, Second immunoglobulin (Ig)-l	0.001
cd05750	75	cd05750, Ig_Pro_neuregulin, Immunoglobulin (Ig)-li	0.001
cd05728	85	cd05728, Ig4_Contactin-2-like, Fourth Ig domain of	0.001
cd05747	92	cd05747, Ig5_Titin_like, M5, fifth immunoglobulin	0.002
cd04975	101	cd04975, Ig4_SCFR_like, Fourth immunoglobulin (Ig)	0.002
cd07693	100	cd07693, Ig1_Robo, First immunoglobulin (Ig)-like	0.002
cd05892	75	cd05892, Ig_Myotilin_C, C-terminal immunoglobulin	0.002
cd05869	97	cd05869, Ig5_NCAM-1, Fifth immunoglobulin (Ig)-lik	0.002
cd05728	85	cd05728, Ig4_Contactin-2-like, Fourth Ig domain of	0.003
cd05763	75	cd05763, Ig_1, Subgroup of the immunoglobulin (Ig)	0.004
cd05736	76	cd05736, Ig2_Follistatin_like, Second immunoglobul	0.004

>gnl|CDD|191810 pfam07679, I-set, Immunoglobulin I-set domain

 Score = 81.5 bits (202), Expect = 4e-20
 Identities = 29/93 (31%), Positives = 44/93 (47%), Gaps = 4/93 (4%)

Query: 113 PTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFA 172
           P F +KP   +  +G+   F C +  DP PTV W   G  ++   R K + +   +    
Sbjct: 1   PKFTQKPKDVEVQEGESARFTCTVTGDPDPTVSWFKDGQPLRSSDRFKVTYEGGTY---- 56

Query: 173 SLEIIDVTIEDAGKYKVTAKNELGESNATISLN 205
           +L I +V  +D GKY   A N  GE+ A+  L 
Sbjct: 57  TLTISNVQPDDEGKYTCVATNSAGEAEASAELT 89

Length = 90

>gnl|CDD|191810 pfam07679, I-set, Immunoglobulin I-set domain

 Score = 68.4 bits (168), Expect = 4e-15
 Identities = 28/94 (29%), Positives = 37/94 (39%), Gaps = 5/94 (5%)

Query: 9   PSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYL 68
           P FTQKP+  +  EG    F C +  +P P + WF+    L    R  +           
Sbjct: 1   PKFTQKPKDVEVQEGESARFTCTVTGDPDPTVSWFKDGQPLRSSDRFKVT-----YEGGT 55

Query: 69  VALELDDVIETDAGLYKVKAKNKMGEVAASINLN 102
             L + +V   D G Y   A N  GE  AS  L 
Sbjct: 56  YTLTISNVQPDDEGKYTCVATNSAGEAEASAELT 89

Length = 90

>gnl|CDD|143165 cd00096, Ig, Immunoglobulin domain

 Score = 60.6 bits (146), Expect = 2e-12
 Identities = 19/74 (25%), Positives = 34/74 (45%)

Query: 130 LLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKV 189
           +   C     P PT+ W  +G  +      +    +   S  ++L I +VT+ED+G Y  
Sbjct: 1   VTLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTC 60

Query: 190 TAKNELGESNATIS 203
            A N  G  +A+++
Sbjct: 61  VASNSAGTVSASVT 74

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74

>gnl|CDD|143170 cd04969, Ig5_Contactin_like, Fifth Ig domain of contactin

 Score = 56.3 bits (136), Expect = 8e-11
 Identities = 30/78 (38%), Positives = 42/78 (53%), Gaps = 7/78 (8%)

Query: 127 GKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGK 186
           G  ++ EC+ +A P PT+ WS     +    R    I  DG     SLEI++VT  D GK
Sbjct: 1   GGDVIIECKPKAAPKPTISWSKGTELLTNSSR--ICIWPDG-----SLEILNVTKSDEGK 53

Query: 187 YKVTAKNELGESNATISL 204
           Y   A+N  G++N+T SL
Sbjct: 54  YTCFAENFFGKANSTGSL 71

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neuronal act ivity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 73

>gnl|CDD|214653 smart00410, IG_like, Immunoglobulin like

 Score = 56.4 bits (136), Expect = 9e-11
 Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 5/79 (6%)

Query: 127 GKRLLFECRIQADPAPTVIWSHSGVQ-VKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAG 185
           G+ +   C     P P V W   G + + E  R  FS+ + G +  ++L I +VT ED+G
Sbjct: 9   GESVTLSCEASGSPPPEVTWYKQGGKLLAESGR--FSVSRSGST--STLTISNVTPEDSG 64

Query: 186 KYKVTAKNELGESNATISL 204
            Y   A N  G +++  +L
Sbjct: 65  TYTCAATNSSGSASSGTTL 83

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG. Length = 85

>gnl|CDD|214652 smart00409, IG, Immunoglobulin

 Score = 56.4 bits (136), Expect = 9e-11
 Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 5/79 (6%)

Query: 127 GKRLLFECRIQADPAPTVIWSHSGVQ-VKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAG 185
           G+ +   C     P P V W   G + + E  R  FS+ + G +  ++L I +VT ED+G
Sbjct: 9   GESVTLSCEASGSPPPEVTWYKQGGKLLAESGR--FSVSRSGST--STLTISNVTPEDSG 64

Query: 186 KYKVTAKNELGESNATISL 204
            Y   A N  G +++  +L
Sbjct: 65  TYTCAATNSSGSASSGTTL 83

Length = 85

>gnl|CDD|143223 cd05746, Ig4_Peroxidasin, Fourth immunoglobulin (Ig)-like domain of peroxidasin

 Score = 55.3 bits (133), Expect = 2e-10
 Identities = 27/71 (38%), Positives = 40/71 (56%), Gaps = 7/71 (9%)

Query: 134 CRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKN 193
           C  Q DP PT+ W+  GVQV E    KF I  +G+     L I DV + D G+Y+  A+N
Sbjct: 5   CSAQGDPEPTITWNKDGVQVTESG--KFHISPEGY-----LAIRDVGVADQGRYECVARN 57

Query: 194 ELGESNATISL 204
            +G ++ ++ L
Sbjct: 58  TIGYASVSMVL 68

Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self. Length = 69

>gnl|CDD|143225 cd05748, Ig_Titin_like, Immunoglobulin (Ig)-like domain of titin and similar proteins

 Score = 54.5 bits (132), Expect = 3e-10
 Identities = 26/69 (37%), Positives = 35/69 (50%), Gaps = 4/69 (5%)

Query: 136 IQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNEL 195
           I   P PTV WS  G  +K   R    I+    +   SL I +    D+GKY +T KN  
Sbjct: 8   ISGRPTPTVTWSKDGKPLKLSGR--VQIET--TASSTSLVIKNAERSDSGKYTLTLKNPA 63

Query: 196 GESNATISL 204
           GE +ATI++
Sbjct: 64  GEKSATINV 72

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-III domains. Also included in this group are worm twitchin and insect projectin, thick filament proteins of invertebrate muscle, which also have repeated Ig-like and FN-III domains. Length = 74

>gnl|CDD|197706 smart00408, IGc2, Immunoglobulin C-2 Type

 Score = 51.3 bits (123), Expect = 4e-09
 Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 8/70 (11%)

Query: 127 GKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGK 186
           G+ +   C  + +P P + W   G  + E  R   S         ++L I  V++ED+G 
Sbjct: 2   GQSVTLTCPAEGNPVPNITWLKDGKPLPESNRFVASG--------STLTIKSVSLEDSGL 53

Query: 187 YKVTAKNELG 196
           Y   A+N  G
Sbjct: 54  YTCVAENSAG 63

Length = 63

>gnl|CDD|143224 cd05747, Ig5_Titin_like, M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins

 Score = 52.0 bits (124), Expect = 5e-09
 Identities = 29/94 (30%), Positives = 44/94 (46%), Gaps = 4/94 (4%)

Query: 111 LAPTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSY 170
           L  T L KP      +G+   F C +  +PAPTV W   G  +   +RH+ +  +    Y
Sbjct: 2   LPATILTKPRSLTVSEGESARFSCDVDGEPAPTVTWMREGQIIVSSQRHQITSTE----Y 57

Query: 171 FASLEIIDVTIEDAGKYKVTAKNELGESNATISL 204
            ++ EI  V + D G Y V  +N  G+  A  +L
Sbjct: 58  KSTFEISKVQMSDEGNYTVVVENSEGKQEAQFTL 91

Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Length = 92

>gnl|CDD|197706 smart00408, IGc2, Immunoglobulin C-2 Type

 Score = 49.3 bits (118), Expect = 2e-08
 Identities = 21/72 (29%), Positives = 28/72 (38%), Gaps = 9/72 (12%)

Query: 22 EGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDA 81
          EG  +   C    NP P+I W +    L E  R V       +      L +  V   D+
Sbjct: 1  EGQSVTLTCPAEGNPVPNITWLKDGKPLPESNRFV------ASGST---LTIKSVSLEDS 51

Query: 82 GLYKVKAKNKMG 93
          GLY   A+N  G
Sbjct: 52 GLYTCVAENSAG 63

Length = 63

>gnl|CDD|143299 cd05891, Ig_M-protein_C, C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2)

 Score = 50.7 bits (121), Expect = 2e-08
 Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 3/71 (4%)

Query: 126 DGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAG 185
           +GK L   C +  +P P VIW  +   ++  + +   +++     +ASL I  VT ED+G
Sbjct: 15  EGKTLNLTCTVFGNPDPEVIWFKNDQDIELSEHYSVKLEQ---GKYASLTIKGVTSEDSG 71

Query: 186 KYKVTAKNELG 196
           KY +  KN+ G
Sbjct: 72  KYSINVKNKYG 82

Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers. Length = 92

>gnl|CDD|143202 cd05725, Ig3_Robo, Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

 Score = 48.6 bits (116), Expect = 4e-08
 Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 22/80 (27%)

Query: 132 FECRIQADPAPTVIWSHSG-------VQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDA 184
           F+C +  DP PTV+W            ++ +DK               SL+I +VT  D 
Sbjct: 3   FQCEVGGDPVPTVLWRKEDGELPKGRAEILDDK---------------SLKIRNVTAGDE 47

Query: 185 GKYKVTAKNELGESNATISL 204
           G Y   A+N +G+  A+ SL
Sbjct: 48  GSYTCEAENMVGKIEASASL 67

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 69

>gnl|CDD|143214 cd05737, Ig_Myomesin_like_C, C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein

 Score = 47.9 bits (114), Expect = 1e-07
 Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 5/81 (6%)

Query: 126 DGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAG 185
           +GK L   C +  DP P V W  +   +     +   +++     +ASL I  V+ ED+G
Sbjct: 15  EGKTLNLTCTVFGDPDPEVSWLKNDQALALSDHYNVKVEQ---GKYASLTIKGVSSEDSG 71

Query: 186 KYKVTAKNELG--ESNATISL 204
           KY +  KN+ G    + T+S+
Sbjct: 72  KYGIVVKNKYGGETVDVTVSV 92

Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity. Length = 92

>gnl|CDD|143221 cd05744, Ig_Myotilin_C_like, Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin

 Score = 47.1 bits (112), Expect = 2e-07
 Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 2/73 (2%)

Query: 133 ECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAK 192
           ECR+ A P P + W  +   +  +   + S+ +D       L I +   EDAG Y V+A 
Sbjct: 4   ECRVSAIPPPQIFWKKNNEMLTYNT-DRISLYQDNCGRI-CLLIQNANKEDAGWYTVSAV 61

Query: 193 NELGESNATISLN 205
           NE G  +    L+
Sbjct: 62  NEAGVVSCNARLD 74

Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP). Length = 75

>gnl|CDD|143165 cd00096, Ig, Immunoglobulin domain

 Score = 46.3 bits (109), Expect = 3e-07
 Identities = 20/75 (26%), Positives = 29/75 (38%), Gaps = 1/75 (1%)

Query: 26  LIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYK 85
           +   C     P P I W +    L     T    +  GT+     L + +V   D+G Y 
Sbjct: 1   VTLTCLASGPPPPTITWLKNGKPLPSSVLTR-VRSSRGTSSGSSTLTISNVTLEDSGTYT 59

Query: 86  VKAKNKMGEVAASIN 100
             A N  G V+AS+ 
Sbjct: 60  CVASNSAGTVSASVT 74

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74

>gnl|CDD|143301 cd05893, Ig_Palladin_C, C-terminal immunoglobulin (Ig)-like domain of palladin

 Score = 46.6 bits (110), Expect = 3e-07
 Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 2/74 (2%)

Query: 132 FECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTA 191
            ECR+   P P + W      +  +   + S+ +D   Y   L I   T EDAG Y V+A
Sbjct: 3   LECRVSGVPHPQIFWKKENESLTHNT-DRVSMHQDNCGYICLL-IQGATKEDAGWYTVSA 60

Query: 192 KNELGESNATISLN 205
           KNE G  + T  L+
Sbjct: 61  KNEAGIVSCTARLD 74

Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions. Length = 75

>gnl|CDD|143260 cd05852, Ig5_Contactin-1, Fifth Ig domain of contactin-1

 Score = 45.0 bits (106), Expect = 1e-06
 Identities = 28/78 (35%), Positives = 41/78 (52%), Gaps = 7/78 (8%)

Query: 127 GKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGK 186
           G R++ EC+ +A P P   WS     +  + R   SI  DG     SLEI+++T  D G 
Sbjct: 1   GGRVIIECKPKAAPKPKFSWSKGTELLVNNSR--ISIWDDG-----SLEILNITKLDEGS 53

Query: 187 YKVTAKNELGESNATISL 204
           Y   A+N  G++N+T  L
Sbjct: 54  YTCFAENNRGKANSTGVL 71

Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 73

>gnl|CDD|143207 cd05730, Ig3_NCAM-1_like, Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

 Score = 44.5 bits (105), Expect = 3e-06
 Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 5/80 (6%)

Query: 125 DDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDA 184
           + G+ +   C     P PT+ W+  G  + E    K+S ++DG    + + I+DV   D 
Sbjct: 16  NLGQSVTLACDADGFPEPTMTWTKDGEPI-ESGEEKYSFNEDG----SEMTILDVDKLDE 70

Query: 185 GKYKVTAKNELGESNATISL 204
            +Y   A+N+ GE  A I L
Sbjct: 71  AEYTCIAENKAGEQEAEIHL 90

Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans interactions), through binding to the Ig1 and Ig2 domains. The adhesive ability of NCAM is modulated by the addition of polysialic acid chains to the fifth Ig-like domain. Length = 95

>gnl|CDD|143222 cd05745, Ig3_Peroxidasin, Third immunoglobulin (Ig)-like domain of peroxidasin

 Score = 43.8 bits (103), Expect = 3e-06
 Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 8/81 (9%)

Query: 22  EGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDA 81
           EG  + F C+    P+P I W +G +QLS D R ++ ++  GT      L +  V   D 
Sbjct: 1   EGQTVDFLCEAQGYPQPVIAWTKGGSQLSVDRRHLVLSS--GT------LRISRVALHDQ 52

Query: 82  GLYKVKAKNKMGEVAASINLN 102
           G Y+ +A N +G       L 
Sbjct: 53  GQYECQAVNIVGSQRTVAQLT 73

Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self. Length = 74

>gnl|CDD|143263 cd05855, Ig_TrkB_d5, Fifth domain (immunoglobulin-like) of Trk receptor TrkB

 Score = 42.5 bits (100), Expect = 9e-06
 Identities = 22/69 (31%), Positives = 35/69 (50%)

Query: 35  NPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGE 94
           NPKP + WF     L+E      K   I   +Y   L+LD+    + G+Y + AKN+ GE
Sbjct: 10  NPKPTLQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGE 69

Query: 95  VAASINLNF 103
              +++ +F
Sbjct: 70  DEKNVSAHF 78

TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems. Length = 79

>gnl|CDD|143222 cd05745, Ig3_Peroxidasin, Third immunoglobulin (Ig)-like domain of peroxidasin

 Score = 41.8 bits (98), Expect = 1e-05
 Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 7/80 (8%)

Query: 126 DGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAG 185
           +G+ + F C  Q  P P + W+  G Q+  D+RH   +   G     +L I  V + D G
Sbjct: 1   EGQTVDFLCEAQGYPQPVIAWTKGGSQLSVDRRHL--VLSSG-----TLRISRVALHDQG 53

Query: 186 KYKVTAKNELGESNATISLN 205
           +Y+  A N +G       L 
Sbjct: 54  QYECQAVNIVGSQRTVAQLT 73

Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self. Length = 74

>gnl|CDD|214653 smart00410, IG_like, Immunoglobulin like

 Score = 41.7 bits (98), Expect = 2e-05
 Identities = 19/81 (23%), Positives = 34/81 (41%), Gaps = 6/81 (7%)

Query: 22  EGNRLIFECQLLCNPKPDIVWFR-GETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETD 80
           EG  +   C+   +P P++ W++ G   L+E  R  +       +     L + +V   D
Sbjct: 8   EGESVTLSCEASGSPPPEVTWYKQGGKLLAESGRFSVS-----RSGSTSTLTISNVTPED 62

Query: 81  AGLYKVKAKNKMGEVAASINL 101
           +G Y   A N  G  ++   L
Sbjct: 63  SGTYTCAATNSSGSASSGTTL 83

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG. Length = 85

>gnl|CDD|214652 smart00409, IG, Immunoglobulin

 Score = 41.7 bits (98), Expect = 2e-05
 Identities = 19/81 (23%), Positives = 34/81 (41%), Gaps = 6/81 (7%)

Query: 22  EGNRLIFECQLLCNPKPDIVWFR-GETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETD 80
           EG  +   C+   +P P++ W++ G   L+E  R  +       +     L + +V   D
Sbjct: 8   EGESVTLSCEASGSPPPEVTWYKQGGKLLAESGRFSVS-----RSGSTSTLTISNVTPED 62

Query: 81  AGLYKVKAKNKMGEVAASINL 101
           +G Y   A N  G  ++   L
Sbjct: 63  SGTYTCAATNSSGSASSGTTL 83

Length = 85

>gnl|CDD|143173 cd04972, Ig_TrkABC_d4, Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

 Score = 42.1 bits (99), Expect = 2e-05
 Identities = 15/75 (20%), Positives = 33/75 (44%), Gaps = 4/75 (5%)

Query: 131 LFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVT 190
              C  +  P P V W  +G+ V + +        +      +L++ ++T E       T
Sbjct: 19  TIRCTAEGSPLPKVEWIIAGLIVIQTRT----DTLETTVDIYNLQLSNITSETQTTVTCT 74

Query: 191 AKNELGESNATISLN 205
           A+N +G++N ++ + 
Sbjct: 75  AENPVGQANVSVQVT 89

TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor found in all major NGF targets, including the sympathetic, trigeminal, and dorsal root ganglia, cholinergic neurons of the basal forebrain and the striatum. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems. The TrkC gene is expressed throughout the mammalian nervous system. Length = 90

>gnl|CDD|143177 cd04976, Ig2_VEGFR, Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR)

 Score = 40.5 bits (95), Expect = 4e-05
 Identities = 25/72 (34%), Positives = 35/72 (48%), Gaps = 10/72 (13%)

Query: 135 RIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNE 194
           +++A P P + W  +G ++  +K       K GHS    L I DVT EDAG Y V   N+
Sbjct: 6   KVKAYPPPEIQWYKNG-KLISEKNRTK---KSGHS----LTIKDVTEEDAGNYTVVLTNK 57

Query: 195 LG--ESNATISL 204
               E   T +L
Sbjct: 58  QAKLEKRLTFTL 69

Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells. VEGFR-3 has been shown to be involved in tumor angiogenesis and growth. Length = 71

>gnl|CDD|143208 cd05731, Ig3_L1-CAM_like, Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

 Score = 40.4 bits (95), Expect = 4e-05
 Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 7/74 (9%)

Query: 130 LLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKV 189
           LL EC  +  P P + W   G ++  D+    + +K       +L+I +V+ ED G+Y+ 
Sbjct: 1   LLLECIAEGLPTPEISWIKIGGELPADRTKFENFNK-------TLKIDNVSEEDDGEYRC 53

Query: 190 TAKNELGESNATIS 203
           TA N LG +  TIS
Sbjct: 54  TASNSLGSARHTIS 67

Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin. Length = 71

>gnl|CDD|143302 cd05894, Ig_C5_MyBP-C, C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C)

 Score = 40.2 bits (94), Expect = 6e-05
 Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 3/78 (3%)

Query: 127 GKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGK 186
           G +L  +  I  +PAPTV WS  G +   +   +  ++       +S  I     ED G 
Sbjct: 10  GNKLRLDVPISGEPAPTVTWSR-GDKAFTETEGRVRVESYKDL--SSFVIEGAEREDEGV 66

Query: 187 YKVTAKNELGESNATISL 204
           Y +T  N +GE +A++ +
Sbjct: 67  YTITVTNPVGEDHASLFV 84

Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain. Length = 86

>gnl|CDD|143225 cd05748, Ig_Titin_like, Immunoglobulin (Ig)-like domain of titin and similar proteins

 Score = 39.5 bits (93), Expect = 9e-05
 Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 5/66 (7%)

Query: 36  PKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGEV 95
           P P + W +    L    R  ++TT   T+     L + +   +D+G Y +  KN  GE 
Sbjct: 12  PTPTVTWSKDGKPLKLSGRVQIETTASSTS-----LVIKNAERSDSGKYTLTLKNPAGEK 66

Query: 96  AASINL 101
           +A+IN+
Sbjct: 67  SATINV 72

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-III domains. Also included in this group are worm twitchin and insect projectin, thick filament proteins of invertebrate muscle, which also have repeated Ig-like and FN-III domains. Length = 74

>gnl|CDD|143299 cd05891, Ig_M-protein_C, C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2)

 Score = 38.7 bits (90), Expect = 2e-04
 Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 4/72 (5%)

Query: 22 EGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDA 81
          EG  L   C +  NP P+++WF+ +  +       +K   +   KY  +L +  V   D+
Sbjct: 15 EGKTLNLTCTVFGNPDPEVIWFKNDQDIELSEHYSVK---LEQGKY-ASLTIKGVTSEDS 70

Query: 82 GLYKVKAKNKMG 93
          G Y +  KNK G
Sbjct: 71 GKYSINVKNKYG 82

Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers. Length = 92

>gnl|CDD|143241 cd05764, Ig_2, Subgroup of the immunoglobulin (Ig) superfamily

 Score = 38.6 bits (90), Expect = 2e-04
 Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 8/79 (10%)

Query: 127 GKRLLFECRIQADPAPTVIW-SHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAG 185
           G+R    C+ + DP P + W S  G  +    R   ++  D      +L+I+  T++D G
Sbjct: 1   GQRATLRCKARGDPEPAIHWISPDGKLISNSSR---TLVYDN----GTLDILITTVKDTG 53

Query: 186 KYKVTAKNELGESNATISL 204
            +   A N  GE+ AT+ L
Sbjct: 54  SFTCIASNAAGEATATVEL 72

Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74

>gnl|CDD|143214 cd05737, Ig_Myomesin_like_C, C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein

 Score = 38.6 bits (90), Expect = 3e-04
 Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 4/72 (5%)

Query: 22 EGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDA 81
          EG  L   C +  +P P++ W + +  L+      +K   +   KY  +L +  V   D+
Sbjct: 15 EGKTLNLTCTVFGDPDPEVSWLKNDQALALSDHYNVK---VEQGKY-ASLTIKGVSSEDS 70

Query: 82 GLYKVKAKNKMG 93
          G Y +  KNK G
Sbjct: 71 GKYGIVVKNKYG 82

Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity. Length = 92

>gnl|CDD|143231 cd05754, Ig3_Perlecan_like, Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins

 Score = 38.7 bits (90), Expect = 3e-04
 Identities = 22/81 (27%), Positives = 32/81 (39%), Gaps = 13/81 (16%)

Query: 126 DGKRLLFECR-IQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDA 184
            G  + F CR     PA T++W+  G            +      +   L I +V + DA
Sbjct: 15  PGADVSFICRAKSKSPAYTLVWTRVG----------GGLPSRAMDFNGILTIRNVQLSDA 64

Query: 185 GKYKVTAKNELG--ESNATIS 203
           G Y  T  N L   E+ AT+ 
Sbjct: 65  GTYVCTGSNMLDTDEATATLY 85

Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2. Length = 85

>gnl|CDD|143301 cd05893, Ig_Palladin_C, C-terminal immunoglobulin (Ig)-like domain of palladin

 Score = 38.1 bits (88), Expect = 4e-04
 Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 5/76 (6%)

Query: 28  FECQLLCNPKPDIVWFRGETQLSEDT-RTVMKTTPIGTNKYLVALELDDVIETDAGLYKV 86
            EC++   P P I W +    L+ +T R  M     G     + L +    + DAG Y V
Sbjct: 3   LECRVSGVPHPQIFWKKENESLTHNTDRVSMHQDNCG----YICLLIQGATKEDAGWYTV 58

Query: 87  KAKNKMGEVAASINLN 102
            AKN+ G V+ +  L+
Sbjct: 59  SAKNEAGIVSCTARLD 74

Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions. Length = 75

>gnl|CDD|143209 cd05732, Ig5_NCAM-1_like, Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins

 Score = 38.7 bits (90), Expect = 4e-04
 Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 1/64 (1%)

Query: 134 CRIQADPAPTVIWSHSGVQV-KEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAK 192
           C  + DP P + W  +     + DK     I   GH+  +SL + DV + DAG+Y   A 
Sbjct: 23  CEAEGDPIPEITWRRATRNFSEGDKSLDGRIVVRGHARVSSLTLKDVQLTDAGRYDCEAS 82

Query: 193 NELG 196
           N +G
Sbjct: 83  NRIG 86

Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans interactions), through binding to the Ig1 and Ig2 domains. The adhesive ability of NCAM is modulated by the addition of polysialic acid chains to the fifth Ig-like domain. Also included in this group is NCAM-2 (also known as OCAM/mamFas II and RNCAM) NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE). Length = 96

>gnl|CDD|143172 cd04971, Ig_TrKABC_d5, Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

 Score = 38.1 bits (89), Expect = 4e-04
 Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 3/74 (4%)

Query: 136 IQADPAPTVIWSHSGVQVKEDKRHKFSID---KDGHSYFASLEIIDVTIEDAGKYKVTAK 192
           ++ +P PT+ W H+G  + E    +  I         Y   L+  + T  + G Y + A 
Sbjct: 7   VRGNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVAS 66

Query: 193 NELGESNATISLNF 206
           NE G+ + +IS +F
Sbjct: 67  NEYGQDSKSISAHF 80

TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor found in all major NGF targets, including the sympathetic, trigeminal, and dorsal root ganglia, cholinergic neurons of the basal forebrain and the striatum. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems. The TrkC gene is expressed throughout the mammalian nervous system. Length = 81

>gnl|CDD|143172 cd04971, Ig_TrKABC_d5, Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

 Score = 37.4 bits (87), Expect = 6e-04
 Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 2/71 (2%)

Query: 35  NPKPDIVWFRGETQLSEDT--RTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKM 92
           NPKP + W+     L+E    RT +        +Y   L+ D+    + G Y + A N+ 
Sbjct: 10  NPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEY 69

Query: 93  GEVAASINLNF 103
           G+ + SI+ +F
Sbjct: 70  GQDSKSISAHF 80

TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor found in all major NGF targets, including the sympathetic, trigeminal, and dorsal root ganglia, cholinergic neurons of the basal forebrain and the striatum. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems. The TrkC gene is expressed throughout the mammalian nervous system. Length = 81

>gnl|CDD|143221 cd05744, Ig_Myotilin_C_like, Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin

 Score = 37.1 bits (86), Expect = 7e-04
 Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 5/75 (6%)

Query: 29  ECQLLCNPKPDIVWFRGETQLSEDT-RTVMKTTPIGTNKYLVALELDDVIETDAGLYKVK 87
           EC++   P P I W +    L+ +T R  +     G     + L + +  + DAG Y V 
Sbjct: 4   ECRVSAIPPPQIFWKKNNEMLTYNTDRISLYQDNCGR----ICLLIQNANKEDAGWYTVS 59

Query: 88  AKNKMGEVAASINLN 102
           A N+ G V+ +  L+
Sbjct: 60  AVNEAGVVSCNARLD 74

Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP). Length = 75

>gnl|CDD|143170 cd04969, Ig5_Contactin_like, Fifth Ig domain of contactin

 Score = 37.0 bits (86), Expect = 8e-04
 Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 8/71 (11%)

Query: 23 GNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAG 82
          G  +I EC+    PKP I W +G   L+  +R  +   P G+      LE+ +V ++D G
Sbjct: 1  GGDVIIECKPKAAPKPTISWSKGTELLTNSSRICI--WPDGS------LEILNVTKSDEG 52

Query: 83 LYKVKAKNKMG 93
           Y   A+N  G
Sbjct: 53 KYTCFAENFFG 63

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neuronal act ivity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 73

>gnl|CDD|212460 cd05723, Ig4_Neogenin, Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins

 Score = 36.9 bits (85), Expect = 9e-04
 Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 7/75 (9%)

Query: 130 LLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKV 189
           ++FEC +   P PTV W  +G  V      K   + +       L+++ +   D G Y+ 
Sbjct: 2   IVFECEVTGKPTPTVKWVKNGDMVIPSDYFKIVKEHN-------LQVLGLVKSDEGFYQC 54

Query: 190 TAKNELGESNATISL 204
            A+N++G   A   L
Sbjct: 55  IAENDVGNVQAGAQL 69

Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain. Length = 71

>gnl|CDD|215677 pfam00047, ig, Immunoglobulin domain

 Score = 36.4 bits (84), Expect = 0.001
 Identities = 17/64 (26%), Positives = 23/64 (35%), Gaps = 9/64 (14%)

Query: 127 GKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYF---ASLEIIDVTIED 183
           G  +   C +   P   V W       KE K  + S             +L I +VT ED
Sbjct: 1   GSSVTLTCSVSGPPQVDVTWF------KEGKGLEESTTVGTDENRVSSITLTISNVTPED 54

Query: 184 AGKY 187
           +G Y
Sbjct: 55  SGTY 58

Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain. Length = 62

>gnl|CDD|143206 cd05729, Ig2_FGFR_like, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

 Score = 37.0 bits (86), Expect = 0.001
 Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 3/70 (4%)

Query: 132 FECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTA 191
            +C    +P PT+ W   G   K++ R      K     + +L +  V   D+GKY    
Sbjct: 14  LKCPASGNPRPTITWLKDGKPFKKEHRIG--GYKVRKKKW-TLILESVVPSDSGKYTCIV 70

Query: 192 KNELGESNAT 201
           +N+ G  N T
Sbjct: 71  ENKYGSINHT 80

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans. This group also contains fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors. Length = 85

>gnl|CDD|206066 pfam13895, Ig_2, Immunoglobulin domain

 Score = 36.6 bits (85), Expect = 0.001
 Identities = 19/93 (20%), Positives = 34/93 (36%), Gaps = 19/93 (20%)

Query: 118 KPSIRQE----DDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFAS 173
           KP +        +G+ +   C    +P P   W   GV +   +   F            
Sbjct: 1   KPVLTPSPTVVFEGEDVTLTCSAPGNPPPNYTWYKDGVPLSSSQNGFF------------ 48

Query: 174 LEIIDVTIEDAGKYKVTAKNE-LGESNATISLN 205
               +V+ ED+G Y   A N   G+++  ++L 
Sbjct: 49  --TPNVSAEDSGTYTCVASNGGGGKTSNPVTLT 79

This domain contains immunoglobulin-like domains. Length = 80

>gnl|CDD|143326 cd07702, Ig2_VEGFR-1, Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1)

 Score = 36.4 bits (84), Expect = 0.001
 Identities = 22/55 (40%), Positives = 28/55 (50%), Gaps = 7/55 (12%)

Query: 135 RIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKV 189
           +++A PAP VIW   G+   E          DG+S    L I DVT EDAG Y +
Sbjct: 6   KVKAFPAPEVIWLKDGLPAAEKCSRYHV---DGYS----LVIKDVTEEDAGIYTI 53

Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells. Length = 72

>gnl|CDD|143227 cd05750, Ig_Pro_neuregulin, Immunoglobulin (Ig)-like domain in neuregulins (NRGs)

 Score = 36.4 bits (84), Expect = 0.001
 Identities = 12/65 (18%), Positives = 27/65 (41%), Gaps = 1/65 (1%)

Query: 140 PAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESN 199
           P+    W   G ++    + +    ++     + L+I    + D+G+Y    +N LG   
Sbjct: 12  PSLRFKWFKDGKELNRKNKPRNIKIRNKKKN-SELQINKAKLADSGEYTCVVENILGNDT 70

Query: 200 ATISL 204
            T ++
Sbjct: 71  VTANV 75

Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell survival. There are many NRG-1 isoforms, which arise from the alternative splicing of mRNA. Less is known of the functions of the other NRGs. NRG-2 and -3 are expressed predominantly in the nervous system. NRG-2 is expressed by motor neurons and terminal Schwann cells, and is concentrated near synaptic sites and may be a signal that regulates synaptic differentiation. NRG-4 has been shown to direct pancreatic islet cell development towards the delta-cell lineage. Length = 75

>gnl|CDD|143205 cd05728, Ig4_Contactin-2-like, Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

 Score = 36.4 bits (84), Expect = 0.001
 Identities = 23/89 (25%), Positives = 42/89 (47%), Gaps = 9/89 (10%)

Query: 13  QKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALE 72
           +     + D G+ L +EC+   NP+P   W +    L+ + R  ++    G       L 
Sbjct: 4   KVISDTEADIGSSLRWECKASGNPRPAYRWLKNGQPLASENRIEVEA---GD------LR 54

Query: 73  LDDVIETDAGLYKVKAKNKMGEVAASINL 101
           +  +  +D+G+Y+  A+NK G + AS  L
Sbjct: 55  ITKLSLSDSGMYQCVAENKHGTIYASAEL 83

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes. Length = 85

>gnl|CDD|143224 cd05747, Ig5_Titin_like, M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins

 Score = 36.6 bits (84), Expect = 0.002
 Identities = 23/88 (26%), Positives = 34/88 (38%), Gaps = 5/88 (5%)

Query: 14  KPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALEL 73
           KP+     EG    F C +   P P + W R    +    R  + +T     +Y    E+
Sbjct: 9   KPRSLTVSEGESARFSCDVDGEPAPTVTWMREGQIIVSSQRHQITST-----EYKSTFEI 63

Query: 74  DDVIETDAGLYKVKAKNKMGEVAASINL 101
             V  +D G Y V  +N  G+  A   L
Sbjct: 64  SKVQMSDEGNYTVVVENSEGKQEAQFTL 91

Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Length = 92

>gnl|CDD|143176 cd04975, Ig4_SCFR_like, Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins

 Score = 36.5 bits (85), Expect = 0.002
 Identities = 16/87 (18%), Positives = 35/87 (40%), Gaps = 2/87 (2%)

Query: 120 SIRQEDDGKRLLFECRIQADP-APTVIWSHSGVQVKEDKRH-KFSIDKDGHSYFASLEII 177
           +    + G+ L     ++A P  P + W++    +         S ++  + Y + L+++
Sbjct: 11  TTIFVNLGENLNLVVEVEAYPPPPHINWTYDNRTLTNKLTEIVTSENESEYRYVSELKLV 70

Query: 178 DVTIEDAGKYKVTAKNELGESNATISL 204
            +   +AG Y   A N     + T  L
Sbjct: 71  RLKESEAGTYTFLASNSDASKSLTFEL 97

Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta, binds only to PDGF-B. In mice, PDGFR alpha, and PDGFR beta, are essential for normal development. Length = 101

>gnl|CDD|143317 cd07693, Ig1_Robo, First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

 Score = 36.4 bits (84), Expect = 0.002
 Identities = 25/98 (25%), Positives = 39/98 (39%), Gaps = 8/98 (8%)

Query: 112 APTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKR----HKFSIDKDG 167
            P  ++ PS      G      C+ +  P PT+ W  +G  ++ DK     H+  +   G
Sbjct: 1   PPRIVEHPSDLIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVLP-SG 59

Query: 168 HSYFASLEIIDVTIEDAGKYKVTAKNELGE---SNATI 202
             +F  +        D G Y   A N LGE    NA++
Sbjct: 60  SLFFLRVVHGRKGRSDEGVYVCVAHNSLGEAVSRNASL 97

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 100

>gnl|CDD|143300 cd05892, Ig_Myotilin_C, C-terminal immunoglobulin (Ig)-like domain of myotilin

 Score = 35.7 bits (82), Expect = 0.002
 Identities = 25/66 (37%), Positives = 32/66 (48%), Gaps = 6/66 (9%)

Query: 133 ECRIQADPAPTVIWSHSG--VQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVT 190
           EC+I A P P + W  +   VQ   D R     D  G     +L I +V  +DAG Y V+
Sbjct: 4   ECQISAIPPPKIFWKRNNEMVQYNTD-RISLYQDNSGR---VTLLIKNVNKKDAGWYTVS 59

Query: 191 AKNELG 196
           A NE G
Sbjct: 60  AVNEAG 65

Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders. Length = 75

>gnl|CDD|143277 cd05869, Ig5_NCAM-1, Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

 Score = 36.1 bits (83), Expect = 0.002
 Identities = 19/75 (25%), Positives = 37/75 (49%), Gaps = 7/75 (9%)

Query: 134 CRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKD----GHSYFASLEIIDVTIEDAGKYKV 189
           C    DP P++ W  S   +  +++   ++D       H+  +SL +  +   DAG+Y  
Sbjct: 24  CEASGDPIPSITWRTSTRNISSEEK---TLDGHIVVRSHARVSSLTLKYIQYTDAGEYLC 80

Query: 190 TAKNELGESNATISL 204
           TA N +G+ + ++ L
Sbjct: 81  TASNTIGQDSQSMYL 95

Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans interactions), through binding to the Ig1 and Ig2 domains. The adhesive ability of NCAM is modulated by the addition of polysialic acid chains to the fifth Ig-like domain. Length = 97

>gnl|CDD|143205 cd05728, Ig4_Contactin-2-like, Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

 Score = 35.7 bits (82), Expect = 0.003
 Identities = 23/90 (25%), Positives = 40/90 (44%), Gaps = 8/90 (8%)

Query: 115 FLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASL 174
           +LK  S  + D G  L +EC+   +P P   W  +G  +  + R +             L
Sbjct: 2   WLKVISDTEADIGSSLRWECKASGNPRPAYRWLKNGQPLASENRIEVEAGD--------L 53

Query: 175 EIIDVTIEDAGKYKVTAKNELGESNATISL 204
            I  +++ D+G Y+  A+N+ G   A+  L
Sbjct: 54  RITKLSLSDSGMYQCVAENKHGTIYASAEL 83

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes. Length = 85

>gnl|CDD|143240 cd05763, Ig_1, Subgroup of the immunoglobulin (Ig) superfamily

 Score = 34.9 bits (80), Expect = 0.004
 Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 7/75 (9%)

Query: 133 ECRIQADPAPTVIWSHSG-VQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTA 191
           EC     P P + W   G       +  +  +  +   +F    I+DV IED G Y  TA
Sbjct: 4   ECAATGHPTPQIAWQKDGGTDFPAARERRMHVMPEDDVFF----IVDVKIEDTGVYSCTA 59

Query: 192 KNELG--ESNATISL 204
           +N  G   +NAT+++
Sbjct: 60  QNTAGSISANATLTV 74

Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 75

>gnl|CDD|143213 cd05736, Ig2_Follistatin_like, Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins

 Score = 34.9 bits (80), Expect = 0.004
 Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 4/63 (6%)

Query: 134 CRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKN 193
           C  +  P P + W  +G+ +      + ++  +G    + L I +V  ED G Y   AKN
Sbjct: 5   CHAEGIPLPRLTWLKNGMDITPKLSKQLTLIANG----SELHISNVRYEDTGAYTCIAKN 60

Query: 194 ELG 196
           E G
Sbjct: 61  EAG 63

Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling. Length = 76

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	254
KOG3513|consensus	1051		100.0
KOG3513|consensus	1051		100.0
KOG4194|consensus	873		99.97
KOG4221|consensus	1381		99.97
PHA02785	326	IL-beta-binding protein; Provisional	99.95
KOG4222|consensus	1281		99.95
KOG4222|consensus	1281		99.94
KOG4194|consensus	873		99.94
PHA02826	227	IL-1 receptor-like protein; Provisional	99.93
KOG4221|consensus	1381		99.92
PHA02785	326	IL-beta-binding protein; Provisional	99.9
cd05762	98	Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of	99.85
cd05851	88	Ig3_Contactin-1 Third Ig domain of contactin-1. Ig	99.81
cd05747	92	Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like	99.8
PF07679	90	I-set: Immunoglobulin I-set domain; InterPro: IPR0	99.78
cd05762	98	Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of	99.78
cd04975	101	Ig4_SCFR_like Fourth immunoglobulin (Ig)-like doma	99.77
cd05728	85	Ig4_Contactin-2-like Fourth Ig domain of the neura	99.76
cd05737	92	Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-	99.76
cd04968	88	Ig3_Contactin_like Third Ig domain of contactin. I	99.75
cd05869	97	Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain o	99.75
cd05894	86	Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of card	99.74
cd04972	90	Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) o	99.74
cd05735	88	Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down	99.73
cd05745	74	Ig3_Peroxidasin Third immunoglobulin (Ig)-like dom	99.73
cd05730	95	Ig3_NCAM-1_like Third immunoglobulin (Ig)-like dom	99.73
cd05865	96	Ig1_NCAM-1 First immunoglobulin (Ig)-like domain o	99.73
cd05732	96	Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like dom	99.73
cd05773	109	Ig8_hNephrin_like Eighth immunoglobulin-like domai	99.73
cd05870	98	Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain o	99.72
cd05852	73	Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig	99.72
cd04975	101	Ig4_SCFR_like Fourth immunoglobulin (Ig)-like doma	99.72
cd05892	75	Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like	99.72
cd05867	76	Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like do	99.72
cd05868	76	Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain o	99.72
cd05851	88	Ig3_Contactin-1 Third Ig domain of contactin-1. Ig	99.72
cd05859	101	Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like do	99.71
cd05891	92	Ig_M-protein_C C-terminal immunoglobulin (Ig)-like	99.71
cd05737	92	Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-	99.71
cd07693	100	Ig1_Robo First immunoglobulin (Ig)-like domain in	99.7
cd05735	88	Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down	99.7
cd05855	79	Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of T	99.7
cd05863	67	Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain	99.7
cd05893	75	Ig_Palladin_C C-terminal immunoglobulin (Ig)-like	99.7
cd05866	92	Ig1_NCAM-2 First immunoglobulin (Ig)-like domain o	99.69
cd04973	79	Ig1_FGFR First immunoglobulin (Ig)-like domain of	99.69
cd05894	86	Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of card	99.69
cd05747	92	Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like	99.69
cd05848	94	Ig1_Contactin-5 First Ig domain of contactin-5. Ig	99.68
cd05892	75	Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like	99.68
cd05748	74	Ig_Titin_like Immunoglobulin (Ig)-like domain of t	99.68
cd05850	94	Ig1_Contactin-2 First Ig domain of contactin-2. Ig	99.68
cd05857	85	Ig2_FGFR Second immunoglobulin (Ig)-like domain of	99.68
cd05723	71	Ig4_Neogenin Fourth immunoglobulin (Ig)-like domai	99.68
cd05867	76	Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like do	99.68
cd05745	74	Ig3_Peroxidasin Third immunoglobulin (Ig)-like dom	99.67
cd04978	76	Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like	99.67
cd05868	76	Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain o	99.67
cd05771	139	IgC_Tapasin_R Tapasin-R immunoglobulin-like domain	99.67
cd05722	95	Ig1_Neogenin First immunoglobulin (Ig)-like domain	99.67
cd04969	73	Ig5_Contactin_like Fifth Ig domain of contactin. I	99.67
cd05859	101	Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like do	99.67
cd05852	73	Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig	99.67
cd05744	75	Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain	99.67
cd05740	91	Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domai	99.66
cd05730	95	Ig3_NCAM-1_like Third immunoglobulin (Ig)-like dom	99.66
cd04971	81	Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of	99.65
PF07679	90	I-set: Immunoglobulin I-set domain; InterPro: IPR0	99.65
cd04976	71	Ig2_VEGFR Second immunoglobulin (Ig)-like domain o	99.65
cd04968	88	Ig3_Contactin_like Third Ig domain of contactin. I	99.65
cd05893	75	Ig_Palladin_C C-terminal immunoglobulin (Ig)-like	99.65
cd05891	92	Ig_M-protein_C C-terminal immunoglobulin (Ig)-like	99.64
cd05743	78	Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domai	99.64
cd04972	90	Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) o	99.64
cd05758	98	Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like do	99.64
cd05863	67	Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain	99.64
cd05739	69	Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-li	99.64
cd04978	76	Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like	99.63
cd04977	92	Ig1_NCAM-1_like First immunoglobulin (Ig)-like dom	99.63
cd05748	74	Ig_Titin_like Immunoglobulin (Ig)-like domain of t	99.63
cd05723	71	Ig4_Neogenin Fourth immunoglobulin (Ig)-like domai	99.63
cd05864	70	Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain	99.63
cd05728	85	Ig4_Contactin-2-like Fourth Ig domain of the neura	99.63
cd05849	93	Ig1_Contactin-1 First Ig domain of contactin-1. Ig	99.63
cd05756	94	Ig1_IL1R_like First immunoglobulin (Ig)-like domai	99.63
cd05865	96	Ig1_NCAM-1 First immunoglobulin (Ig)-like domain o	99.63
cd05854	85	Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig	99.63
cd05855	79	Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of T	99.63
cd05760	77	Ig2_PTK7 Second immunoglobulin (Ig)-like domain of	99.63
cd05726	90	Ig4_Robo Fhird immunoglobulin (Ig)-like domain in	99.63
cd05752	78	Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like do	99.63
cd05749	81	Ig2_Tyro3_like Second immunoglobulin (Ig)-like dom	99.63
cd05744	75	Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain	99.62
cd07693	100	Ig1_Robo First immunoglobulin (Ig)-like domain in	99.62
cd04971	81	Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of	99.62
cd05724	86	Ig2_Robo Second immunoglobulin (Ig)-like domain in	99.62
cd05869	97	Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain o	99.61
cd04969	73	Ig5_Contactin_like Fifth Ig domain of contactin. I	99.61
cd05746	69	Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like do	99.61
cd05857	85	Ig2_FGFR Second immunoglobulin (Ig)-like domain of	99.61
cd05773	109	Ig8_hNephrin_like Eighth immunoglobulin-like domai	99.61
cd05738	74	Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-l	99.6
cd05858	90	Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain o	99.6
cd05856	82	Ig2_FGFRL1-like Second immunoglobulin (Ig)-like do	99.6
cd05876	71	Ig3_L1-CAM Third immunoglobulin (Ig)-like domain o	99.6
cd05853	85	Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig	99.6
cd05763	75	Ig_1 Subgroup of the immunoglobulin (Ig) superfami	99.59
cd05736	76	Ig2_Follistatin_like Second immunoglobulin (Ig)-li	99.59
cd05760	77	Ig2_PTK7 Second immunoglobulin (Ig)-like domain of	99.59
cd05864	70	Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain	99.59
cd04974	90	Ig3_FGFR Third immunoglobulin (Ig)-like domain of	99.59
cd05725	69	Ig3_Robo Third immunoglobulin (Ig)-like domain in	99.59
cd04970	85	Ig6_Contactin_like Sixth Ig domain of contactin. I	99.59
cd04976	71	Ig2_VEGFR Second immunoglobulin (Ig)-like domain o	99.59
cd05848	94	Ig1_Contactin-5 First Ig domain of contactin-5. Ig	99.58
cd04967	91	Ig1_Contactin First Ig domain of contactin. Ig1_Co	99.58
cd05764	74	Ig_2 Subgroup of the immunoglobulin (Ig) superfami	99.58
cd05738	74	Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-l	99.58
cd05732	96	Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like dom	99.58
cd05850	94	Ig1_Contactin-2 First Ig domain of contactin-2. Ig	99.58
cd05742	84	Ig1_VEGFR_like First immunoglobulin (Ig)-like doma	99.57
cd05876	71	Ig3_L1-CAM Third immunoglobulin (Ig)-like domain o	99.57
cd05854	85	Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig	99.57
cd05743	78	Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domai	99.57
cd05870	98	Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain o	99.57
cd05746	69	Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like do	99.56
cd05758	98	Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like do	99.56
cd04973	79	Ig1_FGFR First immunoglobulin (Ig)-like domain of	99.56
cd05736	76	Ig2_Follistatin_like Second immunoglobulin (Ig)-li	99.55
cd05722	95	Ig1_Neogenin First immunoglobulin (Ig)-like domain	99.55
cd05853	85	Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig	99.55
cd05856	82	Ig2_FGFRL1-like Second immunoglobulin (Ig)-like do	99.55
cd05731	71	Ig3_L1-CAM_like Third immunoglobulin (Ig)-like dom	99.55
cd05726	90	Ig4_Robo Fhird immunoglobulin (Ig)-like domain in	99.54
cd05866	92	Ig1_NCAM-2 First immunoglobulin (Ig)-like domain o	99.54
cd07702	72	Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain	99.54
KOG3515|consensus	741		99.54
cd04970	85	Ig6_Contactin_like Sixth Ig domain of contactin. I	99.54
cd05740	91	Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domai	99.54
cd05763	75	Ig_1 Subgroup of the immunoglobulin (Ig) superfami	99.54
cd05764	74	Ig_2 Subgroup of the immunoglobulin (Ig) superfami	99.54
cd05765	81	Ig_3 Subgroup of the immunoglobulin (Ig) superfami	99.53
cd05725	69	Ig3_Robo Third immunoglobulin (Ig)-like domain in	99.53
cd05724	86	Ig2_Robo Second immunoglobulin (Ig)-like domain in	99.53
cd05739	69	Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-li	99.52
cd05858	90	Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain o	99.52
cd05861	84	Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like	99.52
cd05849	93	Ig1_Contactin-1 First Ig domain of contactin-1. Ig	99.52
cd05750	75	Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain	99.52
cd05731	71	Ig3_L1-CAM_like Third immunoglobulin (Ig)-like dom	99.51
cd05882	95	Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-	99.51
cd04977	92	Ig1_NCAM-1_like First immunoglobulin (Ig)-like dom	99.51
cd04974	90	Ig3_FGFR Third immunoglobulin (Ig)-like domain of	99.5
cd05733	77	Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like dom	99.5
cd05898	98	Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain	99.5
cd07702	72	Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain	99.5
cd05873	87	Ig_Sema4D_like Immunoglobulin (Ig)-like domain of	99.5
PHA02826	227	IL-1 receptor-like protein; Provisional	99.5
cd05874	77	Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of	99.49
cd04979	89	Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of	99.49
cd05729	85	Ig2_FGFR_like Second immunoglobulin (Ig)-like doma	99.48
cd07701	95	Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-	99.48
cd05754	85	Ig3_Perlecan_like Third immunoglobulin (Ig)-like d	99.48
cd05753	83	Ig2_FcgammaR_like Second immunoglobulin (Ig)-like	99.47
cd05749	81	Ig2_Tyro3_like Second immunoglobulin (Ig)-like dom	99.47
cd05756	94	Ig1_IL1R_like First immunoglobulin (Ig)-like domai	99.47
cd05765	81	Ig_3 Subgroup of the immunoglobulin (Ig) superfami	99.46
cd05742	84	Ig1_VEGFR_like First immunoglobulin (Ig)-like doma	99.46
cd05875	77	Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-li	99.46
cd05750	75	Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain	99.45
cd05734	79	Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain	99.45
cd05733	77	Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like dom	99.45
cd05861	84	Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like	99.45
cd04967	91	Ig1_Contactin First Ig domain of contactin. Ig1_Co	99.44
cd05875	77	Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-li	99.44
cd05874	77	Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of	99.44
cd05895	76	Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domai	99.43
cd05752	78	Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like do	99.43
cd05734	79	Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain	99.43
cd05860	101	Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of	99.41
cd05898	98	Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain	99.41
cd05860	101	Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of	99.41
cd05757	92	Ig2_IL1R_like Second immunoglobulin (Ig)-like doma	99.4
cd05895	76	Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domai	99.4
PF13895	80	Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V	99.4
cd05729	85	Ig2_FGFR_like Second immunoglobulin (Ig)-like doma	99.38
cd05896	104	Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like	99.38
PHA03376	221	BARF1; Provisional	99.36
cd07690	94	Ig1_CD4 First immunoglobulin (Ig) domain of CD4. I	99.36
cd05882	95	Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-	99.35
cd05862	86	Ig1_VEGFR First immunoglobulin (Ig)-like domain of	99.35
cd05727	96	Ig2_Contactin-2-like Second Ig domain of the neura	99.33
cd05717	95	Ig1_Necl-1-3_like First (N-terminal) immunoglobuli	99.33
smart00409	86	IG Immunoglobulin.	99.33
smart00410	86	IG_like Immunoglobulin like. IG domains that canno	99.33
cd05871	91	Ig_Semaphorin_classIII Immunoglobulin (Ig)-like do	99.33
cd04979	89	Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of	99.32
cd05754	85	Ig3_Perlecan_like Third immunoglobulin (Ig)-like d	99.31
smart00408	63	IGc2 Immunoglobulin C-2 Type.	99.31
cd07701	95	Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-	99.29
cd05873	87	Ig_Sema4D_like Immunoglobulin (Ig)-like domain of	99.28
cd05757	92	Ig2_IL1R_like Second immunoglobulin (Ig)-like doma	99.28
cd05897	95	Ig2_IL1R2_like Second immunoglobulin (Ig)-like dom	99.26
cd05753	83	Ig2_FcgammaR_like Second immunoglobulin (Ig)-like	99.23
cd05872	85	Ig_Sema4B_like Immunoglobulin (Ig)-like domain of	99.22
cd05759	82	Ig2_KIRREL3-like Second immunoglobulin (Ig)-like d	99.22
cd05885	80	Ig2_Necl-4 Second immunoglobulin (Ig)-like domain	99.22
cd05845	95	Ig2_L1-CAM_like Second immunoglobulin (Ig)-like do	99.22
cd05727	96	Ig2_Contactin-2-like Second Ig domain of the neura	99.21
smart00408	63	IGc2 Immunoglobulin C-2 Type.	99.21
cd05881	95	Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-	99.21
PF00047	64	ig: Immunoglobulin domain The Prosite family only	99.2
cd05771	139	IgC_Tapasin_R Tapasin-R immunoglobulin-like domain	99.19
cd05714	106	Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of cho	99.17
cd05862	86	Ig1_VEGFR First immunoglobulin (Ig)-like domain of	99.17
cd05774	105	Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain	99.17
cd05900	112	Ig_Aggrecan Immunoglobulin (Ig)-like domain of the	99.14
cd05897	95	Ig2_IL1R2_like Second immunoglobulin (Ig)-like dom	99.14
cd04983	109	IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V	99.14
cd05885	80	Ig2_Necl-4 Second immunoglobulin (Ig)-like domain	99.13
cd05879	116	Ig_P0 Immunoglobulin (Ig)-like domain of Protein z	99.13
cd05713	100	Ig_MOG_like Immunoglobulin (Ig)-like domain of mye	99.12
smart00410	86	IG_like Immunoglobulin like. IG domains that canno	99.12
smart00409	86	IG Immunoglobulin.	99.12
cd05845	95	Ig2_L1-CAM_like Second immunoglobulin (Ig)-like do	99.12
PF13895	80	Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V	99.11
PF00047	64	ig: Immunoglobulin domain The Prosite family only	99.11
cd05878	110	Ig_Aggrecan_like Immunoglobulin (Ig)-like domain o	99.1
cd05759	82	Ig2_KIRREL3-like Second immunoglobulin (Ig)-like d	99.1
cd05877	106	Ig_LP_like Immunoglobulin (Ig)-like domain of huma	99.09
cd07690	94	Ig1_CD4 First immunoglobulin (Ig) domain of CD4. I	99.09
PHA03376	221	BARF1; Provisional	99.09
PF13927	75	Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1V	99.08
cd05717	95	Ig1_Necl-1-3_like First (N-terminal) immunoglobuli	99.08
cd05871	91	Ig_Semaphorin_classIII Immunoglobulin (Ig)-like do	99.08
cd05751	91	Ig1_LILRB1_like First immunoglobulin (Ig)-like dom	99.07
KOG3515|consensus	741		99.07
cd05899	110	IgV_TCR_beta Immunoglobulin (Ig) variable (V) doma	99.03
cd05896	104	Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like	99.02
cd05718	98	Ig1_PVR_like First immunoglobulin (Ig) domain of p	99.0
cd05883	82	Ig2_Necl-2 Second immunoglobulin (Ig)-like domain	98.98
cd05902	110	Ig_Neurocan Immunoglobulin (Ig)-like domain of the	98.98
cd05883	82	Ig2_Necl-2 Second immunoglobulin (Ig)-like domain	98.97
cd05741	92	Ig_CEACAM_D1_like First immunoglobulin (Ig)-like d	98.96
cd05880	115	Ig_EVA1 Immunoglobulin (Ig)-like domain of epithel	98.95
cd04980	106	IgV_L_kappa Immunoglobulin (Ig) light chain, kappa	98.95
cd00098	95	IgC Immunoglobulin Constant domain. IgC: Immunoglo	98.95
cd05881	95	Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-	98.93
cd05775	97	Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)	98.93
cd05888	100	Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain	98.92
cd05879	116	Ig_P0 Immunoglobulin (Ig)-like domain of Protein z	98.91
cd05901	117	Ig_Versican Immunoglobulin (Ig)-like domain of the	98.91
cd05761	82	Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like	98.91
cd04982	116	IgV_TCR_gamma Immunoglobulin (Ig) variable (V) dom	98.9
PF07686	114	V-set: Immunoglobulin V-set domain; InterPro: IPR0	98.9
cd05715	116	Ig_P0-like Immunoglobulin (Ig)-like domain of Prot	98.89
cd05711	94	Ig_FcalphaRI Immunoglobulin (IG)-like domain of of	98.89
cd00099	105	IgV Immunoglobulin variable domain (IgV). IgV: Imm	98.88
cd07705	83	Ig2_Necl-1 Second immunoglobulin (Ig)-like domain	98.88
cd05774	105	Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain	98.87
PHA02987	189	Ig domain OX-2-like protein; Provisional	98.87
cd05872	85	Ig_Sema4B_like Immunoglobulin (Ig)-like domain of	98.87
cd05714	106	Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of cho	98.87
cd05846	97	Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain	98.86
cd05886	99	Ig1_Nectin-1_like First immunoglobulin (Ig) domain	98.85
cd05884	83	Ig2_Necl-3 Second immunoglobulin (Ig)-like domain	98.84
cd05900	112	Ig_Aggrecan Immunoglobulin (Ig)-like domain of the	98.84
cd05755	100	Ig2_ICAM-1_like Second immunoglobulin (Ig)-like do	98.83
cd05761	82	Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like	98.83
cd00098	95	IgC Immunoglobulin Constant domain. IgC: Immunoglo	98.82
cd04983	109	IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V	98.82
cd05877	106	Ig_LP_like Immunoglobulin (Ig)-like domain of huma	98.81
cd07705	83	Ig2_Necl-1 Second immunoglobulin (Ig)-like domain	98.79
cd07706	116	IgV_TCR_delta Immunoglobulin (Ig) variable (V) dom	98.78
cd05718	98	Ig1_PVR_like First immunoglobulin (Ig) domain of p	98.78
cd05887	96	Ig1_Nectin-3_like First immunoglobulin (Ig) domain	98.76
PF13927	75	Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1V	98.76
cd07699	100	IgC_L Immunoglobulin Constant domain. IgC_L: Immun	98.76
cd05751	91	Ig1_LILRB1_like First immunoglobulin (Ig)-like dom	98.75
cd05878	110	Ig_Aggrecan_like Immunoglobulin (Ig)-like domain o	98.75
cd05888	100	Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain	98.75
cd07694	88	Ig2_CD4 Second immunoglobulin (Ig) domain of CD4.	98.74
cd05712	119	Ig_Siglec_N Immunoglobulin (Ig) domain at the N te	98.74
cd05713	100	Ig_MOG_like Immunoglobulin (Ig)-like domain of mye	98.73
PF08205	89	C2-set_2: CD80-like C2-set immunoglobulin domain ;	98.73
cd05741	92	Ig_CEACAM_D1_like First immunoglobulin (Ig)-like d	98.73
cd05886	99	Ig1_Nectin-1_like First immunoglobulin (Ig) domain	98.7
cd04984	98	IgV_L_lambda Immunoglobulin (Ig) lambda light chai	98.69
cd05880	115	Ig_EVA1 Immunoglobulin (Ig)-like domain of epithel	98.68
cd05899	110	IgV_TCR_beta Immunoglobulin (Ig) variable (V) doma	98.66
cd05902	110	Ig_Neurocan Immunoglobulin (Ig)-like domain of the	98.65
cd05775	97	Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)	98.65
cd05772	111	IgC_SIRP Signal-regulatory protein (SIRP) immunogl	98.65
cd07698	93	IgC_MHC_I_alpha3 Class I major histocompatibility	98.65
cd00099	105	IgV Immunoglobulin variable domain (IgV). IgV: Imm	98.64
cd05716	98	Ig_pIgR Immunoglobulin (Ig)-like domain in the pol	98.64
smart00407	75	IGc1 Immunoglobulin C-Type.	98.63
cd05901	117	Ig_Versican Immunoglobulin (Ig)-like domain of the	98.62
cd05846	97	Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain	98.62
cd05847	94	IgC_CH2_IgE CH2 domain (second constant Ig domain	98.61
cd05715	116	Ig_P0-like Immunoglobulin (Ig)-like domain of Prot	98.6
cd05887	96	Ig1_Nectin-3_like First immunoglobulin (Ig) domain	98.59
cd05884	83	Ig2_Necl-3 Second immunoglobulin (Ig)-like domain	98.58
cd04980	106	IgV_L_kappa Immunoglobulin (Ig) light chain, kappa	98.57
cd05889	96	Ig1_DNAM-1_like First immunoglobulin (Ig) domain o	98.57
cd07696	96	IgC_CH3 CH3 domain (third constant Ig domain of th	98.57
cd07700	107	IgV_CD8_beta Immunoglobulin (Ig) like domain of CD	98.56
cd05755	100	Ig2_ICAM-1_like Second immunoglobulin (Ig)-like do	98.56
cd05716	98	Ig_pIgR Immunoglobulin (Ig)-like domain in the pol	98.56
cd05711	94	Ig_FcalphaRI Immunoglobulin (IG)-like domain of of	98.56
cd00096	74	Ig Immunoglobulin domain. Ig: immunoglobulin (Ig)	98.55
cd04982	116	IgV_TCR_gamma Immunoglobulin (Ig) variable (V) dom	98.54
cd05766	94	IgC_MHC_II_beta Class II major histocompatibility	98.53
cd05772	111	IgC_SIRP Signal-regulatory protein (SIRP) immunogl	98.53
PF07686	114	V-set: Immunoglobulin V-set domain; InterPro: IPR0	98.52
cd05769	115	IgC_TCR_beta T cell receptor (TCR) beta chain cons	98.51
cd05770	93	IgC_beta2m Class I major histocompatibility comple	98.5
cd05768	102	IgC_CH4 CH4 domain (fourth constant Ig domain of t	98.47
cd04981	117	IgV_H Immunoglobulin (Ig) heavy chain (H), variabl	98.44
PHA03271	490	envelope glycoprotein C; Provisional	98.44
cd05767	94	IgC_MHC_II_alpha Class II major histocompatibility	98.44
cd07706	116	IgV_TCR_delta Immunoglobulin (Ig) variable (V) dom	98.43
cd05720	104	Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD	98.4
PF07654	83	C1-set: Immunoglobulin C1-set domain; InterPro: IP	98.39
cd04984	98	IgV_L_lambda Immunoglobulin (Ig) lambda light chai	98.38
PHA02987	189	Ig domain OX-2-like protein; Provisional	98.38
cd00096	74	Ig Immunoglobulin domain. Ig: immunoglobulin (Ig)	98.37
PF08205	89	C2-set_2: CD80-like C2-set immunoglobulin domain ;	98.36
smart00407	75	IGc1 Immunoglobulin C-Type.	98.35
cd05712	119	Ig_Siglec_N Immunoglobulin (Ig) domain at the N te	98.33
cd04985	95	IgC_CH1 CH1 domain (first constant Ig domain of th	98.33
cd07699	100	IgC_L Immunoglobulin Constant domain. IgC_L: Immun	98.32
cd05768	102	IgC_CH4 CH4 domain (fourth constant Ig domain of t	98.32
cd07694	88	Ig2_CD4 Second immunoglobulin (Ig) domain of CD4.	98.31
cd07696	96	IgC_CH3 CH3 domain (third constant Ig domain of th	98.31
cd07697	96	IgC_TCR_gamma T cell receptor (TCR) gamma chain co	98.29
cd05719	95	Ig2_PVR_like Second immunoglobulin (Ig) domain of	98.28
cd05769	115	IgC_TCR_beta T cell receptor (TCR) beta chain cons	98.27
cd05889	96	Ig1_DNAM-1_like First immunoglobulin (Ig) domain o	98.27
cd07698	93	IgC_MHC_I_alpha3 Class I major histocompatibility	98.24
PF07654	83	C1-set: Immunoglobulin C1-set domain; InterPro: IP	98.24
cd04986	99	IgC_CH2 CH2 domain (second constant Ig domain of t	98.23
cd05847	94	IgC_CH2_IgE CH2 domain (second constant Ig domain	98.23
cd07692	65	Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of	98.23
cd07703	95	Ig2_Nectin-2_like Second immunoglobulin (Ig) domai	98.21
smart00406	81	IGv Immunoglobulin V-Type.	98.19
cd07700	107	IgV_CD8_beta Immunoglobulin (Ig) like domain of CD	98.17
KOG1480|consensus	909		98.17
cd05766	94	IgC_MHC_II_beta Class II major histocompatibility	98.16
cd04981	117	IgV_H Immunoglobulin (Ig) heavy chain (H), variabl	98.16
PHA03273	486	envelope glycoprotein C; Provisional	98.14
cd05719	95	Ig2_PVR_like Second immunoglobulin (Ig) domain of	98.14
cd04985	95	IgC_CH1 CH1 domain (first constant Ig domain of th	98.13
PHA03270	466	envelope glycoprotein C; Provisional	98.1
PHA03270	466	envelope glycoprotein C; Provisional	98.09
cd05770	93	IgC_beta2m Class I major histocompatibility comple	98.09
cd05767	94	IgC_MHC_II_alpha Class II major histocompatibility	98.08
cd07697	96	IgC_TCR_gamma T cell receptor (TCR) gamma chain co	98.06
cd05720	104	Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD	98.04
cd04986	99	IgC_CH2 CH2 domain (second constant Ig domain of t	98.04
cd07703	95	Ig2_Nectin-2_like Second immunoglobulin (Ig) domai	98.03
PHA03273	486	envelope glycoprotein C; Provisional	98.02
PHA03269	566	envelope glycoprotein C; Provisional	98.0
PHA03269	566	envelope glycoprotein C; Provisional	97.98
cd07704	97	Ig2_Nectin-3-4_like Second immunoglobulin (Ig) dom	97.97
cd05721	115	IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic	97.92
PHA03271	490	envelope glycoprotein C; Provisional	97.87
cd07704	97	Ig2_Nectin-3-4_like Second immunoglobulin (Ig) dom	97.87
PHA02633	63	hypothetical protein; Provisional	97.87
smart00406	81	IGv Immunoglobulin V-Type.	97.85
PHA02914	500	Immunoglobulin-like domain protein; Provisional	97.8
cd07691	69	Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain	97.78
cd07692	65	Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of	97.77
PHA02982	251	hypothetical protein; Provisional	97.69
PF08204	130	V-set_CD47: CD47 immunoglobulin-like domain; Inter	97.64
cd07689	99	Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain	97.48
KOG0613|consensus	1205		97.37
cd05721	115	IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic	97.36
PF11465	108	Receptor_2B4: Natural killer cell receptor 2B4; In	97.32
PHA02914	500	Immunoglobulin-like domain protein; Provisional	97.32
PHA02633	63	hypothetical protein; Provisional	97.24
cd07691	69	Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain	97.1
cd07689	99	Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain	97.05
PHA03042	286	CD47-like protein; Provisional	96.96
PF02124	211	Marek_A: Marek's disease glycoprotein A; InterPro:	96.69
KOG1480|consensus	909		96.54
KOG4597|consensus	560		96.5
PHA02982	251	hypothetical protein; Provisional	96.43
PF08204	130	V-set_CD47: CD47 immunoglobulin-like domain; Inter	96.37
PF05790	80	C2-set: Immunoglobulin C2-set domain; InterPro: IP	96.11
PHA02865	338	MHC-like TNF binding protein; Provisional	96.0
PF06328	89	Lep_receptor_Ig: Ig-like C2-type domain; InterPro:	95.74
TIGR00864	2740	PCC polycystin cation channel protein. Note: this	95.65
PF11465	108	Receptor_2B4: Natural killer cell receptor 2B4; In	95.63
KOG4597|consensus	560		95.57
PF07354	271	Sp38: Zona-pellucida-binding protein (Sp38); Inter	95.01
PF07354	271	Sp38: Zona-pellucida-binding protein (Sp38); Inter	94.98
PHA02865	338	MHC-like TNF binding protein; Provisional	94.94
PF05790	80	C2-set: Immunoglobulin C2-set domain; InterPro: IP	94.85
PHA03042	286	CD47-like protein; Provisional	94.83
PHA03052	69	Hypothetical protein; Provisional	94.68
cd05890	98	Ig2_Nectin-1_like Second immunoglobulin (Ig) domai	94.66
KOG0613|consensus	1205		94.58
cd05890	98	Ig2_Nectin-1_like Second immunoglobulin (Ig) domai	93.61
KOG1026|consensus	774		92.59
PF03921	91	ICAM_N: Intercellular adhesion molecule (ICAM), N-	91.5
TIGR00864	2740	PCC polycystin cation channel protein. Note: this	91.43
PF06832	89	BiPBP_C: Penicillin-Binding Protein C-terminus Fam	91.35
PHA03189	348	UL14 tegument protein; Provisional	90.27
PHA03240	258	envelope glycoprotein M; Provisional	88.84
PHA03112	141	IL-18 binding protein; Provisional	87.81
PHA03052	69	Hypothetical protein; Provisional	85.87
PF02124	211	Marek_A: Marek's disease glycoprotein A; InterPro:	82.82
PF06328	89	Lep_receptor_Ig: Ig-like C2-type domain; InterPro:	82.73
PHA03283	542	envelope glycoprotein E; Provisional	81.89
PHA03112	141	IL-18 binding protein; Provisional	81.75
PF11049	71	KSHV_K1: Glycoprotein K1 of Kaposi's sarcoma-assoc	81.51

>KOG3513|consensus

Probab=100.00  E-value=1.6e-33  Score=228.39  Aligned_cols=223  Identities=29%  Similarity=0.499  Sum_probs=188.4

Q ss_pred             CCCCCCCeeEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCe
Q psy7036           3 IAEDFAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAG   82 (254)
Q Consensus         3 ~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G   82 (254)
                      |.+..+|.+++.+++..+..|++++|.|.+.|.|.|.++|++||.++....+..-.....+      .|+|.+++..|+|
T Consensus       326 v~v~a~P~w~~~~~d~~~~~gs~v~~eC~a~g~P~p~v~WlkNg~pl~~~~r~~~~~i~~g------~L~is~v~~~dsg  399 (1051)
T KOG3513|consen  326 VTVYAPPYWLQKPQDTEADTGSNVTLECKASGKPNPTVKWLKNGEPLEPAERDPRYKIDDG------TLIISNVQESDSG  399 (1051)
T ss_pred             EEEecCchhhcccceeEecCCCCeEEEEEecCCCCCceEEeeCCeecCccCCCcceEEeCC------EEEEEecccccCe
Confidence            4567899999999999999999999999999999999999999999986655221111122      7999999999999


Q ss_pred             EEEEEEEcCCCceEEEEEEEEeccccCCCCCccccCCCe--eeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcce
Q psy7036          83 LYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSI--RQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHK  160 (254)
Q Consensus        83 ~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~--~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~  160 (254)
                      .|+|.|.|..|...+.+.|+|..     .+|.+...+..  ..+..|..+.|.|...+.|.+.++|.+++..+..+  .+
T Consensus       400 ~YQC~A~Nk~G~i~anA~L~V~a-----~~P~f~~~p~~~~~~a~~g~~v~i~C~~~asP~p~~~W~k~~~~~~~~--~r  472 (1051)
T KOG3513|consen  400 VYQCIAENKYGTIYANAELKVLA-----SAPVFPLNPVERKVMAVVGGTVTIDCKPFASPKPKVSWLKGGEKLLQS--GR  472 (1051)
T ss_pred             EEEeeeecccceEeeeeEEEEEc-----cCCCCCCCccceEEEEEeCCeEEEeeccCCCCcceEEEEcCCcccccC--ce
Confidence            99999999999999999999975     44555444332  46678999999999999999999999998854333  35


Q ss_pred             EEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcceEEEEEEEecCCCCCCCCCCCCeeecCCccccccCCCCcEEE
Q psy7036         161 FSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVI  240 (254)
Q Consensus       161 ~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~l  240 (254)
                      +....+|     +|.|.+++.+|+|.|+|.|.|..|.+..+..|.|+.          ++.+...|....+..|+ ++.|
T Consensus       473 ~~i~edG-----tL~I~n~t~~DaG~YtC~A~N~~G~a~~~~~L~Vkd----------~tri~~~P~~~~v~~g~-~v~l  536 (1051)
T KOG3513|consen  473 IRILEDG-----TLEISNVTRSDAGKYTCVAENKLGKAESTGNLIVKD----------ATRITLAPSNTDVKVGE-SVTL  536 (1051)
T ss_pred             EEECCCC-----cEEecccCcccCcEEEEEEEcccCccceEEEEEEec----------CceEEeccchhhhccCc-eEEE
Confidence            5566677     799999999999999999999999999999999986          77788889999999999 9999


Q ss_pred             EEEEeccCCC--ceeC
Q psy7036         241 ECRLVGEPEP--TISW  254 (254)
Q Consensus       241 ~C~~~~~p~p--~~~W  254 (254)
                      .|.+.-+|..  .|.|
T Consensus       537 ~Ce~shD~~ld~~f~W  552 (1051)
T KOG3513|consen  537 TCEASHDPSLDITFTW  552 (1051)
T ss_pred             EeecccCCCcceEEEE
Confidence            9999877664  4666

>KOG3513|consensus

Probab=100.00  E-value=4.6e-32  Score=219.97  Aligned_cols=220  Identities=30%  Similarity=0.560  Sum_probs=180.7

Q ss_pred             CCCCCeeEe-CCCceeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeE
Q psy7036           5 EDFAPSFTQ-KPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGL   83 (254)
Q Consensus         5 ~~~~p~~~~-~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~   83 (254)
                      ...+|.|.. .|+......|+.|.|.|-+.|.|.|++.|.|.|...... +...  ..     +...|.|.++...|+|.
T Consensus       237 ~~~~P~i~~~~p~~~~a~~G~~v~LECfA~G~P~P~i~W~k~~g~~~~~-r~~~--~~-----~~~vL~I~nv~~~D~G~  308 (1051)
T KOG3513|consen  237 REYAPKILVPFPETETALKGQSVKLECFALGNPTPQIKWRKVDGKPPPR-RATY--SN-----YGKVLKIPNVQYEDAGE  308 (1051)
T ss_pred             cccCCccccCCCCcccccCCCeEEEEEEecCCCCCcEEEEeCCCCCCCc-ceee--ec-----cccEEEecccCcCCCeE
Confidence            446777654 455677899999999999999999999999988742221 1111  11     11289999999999999


Q ss_pred             EEEEEEcCCCceEEEEEEEEeccccCCCCCccccCCCeeeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcc-eEE
Q psy7036          84 YKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRH-KFS  162 (254)
Q Consensus        84 Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~-~~~  162 (254)
                      |.|.+.|..|.......+.|.      .+|.++..+.+..+..|+++.+.|.+.|.|.|.++|++||.++....+. +..
T Consensus       309 Y~C~AeN~~G~~~~~~~v~v~------a~P~w~~~~~d~~~~~gs~v~~eC~a~g~P~p~v~WlkNg~pl~~~~r~~~~~  382 (1051)
T KOG3513|consen  309 YECIAENSRGSATHSGHVTVY------APPYWLQKPQDTEADTGSNVTLECKASGKPNPTVKWLKNGEPLEPAERDPRYK  382 (1051)
T ss_pred             EEEEEecccccceeeEEEEEe------cCchhhcccceeEecCCCCeEEEEEecCCCCCceEEeeCCeecCccCCCcceE
Confidence            999999999998889999987      7888888888999999999999999999999999999999998754442 233


Q ss_pred             EcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcceEEEEEEEecCCCCCCCCCCCCeeecCCccc--cccCCCCcEEE
Q psy7036         163 IDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTK--QSDDDLNDIVI  240 (254)
Q Consensus       163 ~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~p~~~~~~~~~--~~~~g~~~~~l  240 (254)
                      .. ++     .|.|+++...|+|.|.|.|+|.+|..-+.+.|.|...         .|.+...|...  .+..|+ .+.|
T Consensus       383 i~-~g-----~L~is~v~~~dsg~YQC~A~Nk~G~i~anA~L~V~a~---------~P~f~~~p~~~~~~a~~g~-~v~i  446 (1051)
T KOG3513|consen  383 ID-DG-----TLIISNVQESDSGVYQCIAENKYGTIYANAELKVLAS---------APVFPLNPVERKVMAVVGG-TVTI  446 (1051)
T ss_pred             Ee-CC-----EEEEEecccccCeEEEeeeecccceEeeeeEEEEEcc---------CCCCCCCccceEEEEEeCC-eEEE
Confidence            33 33     8999999999999999999999999999999999863         45555555444  667888 9999


Q ss_pred             EEEEeccCCCceeC
Q psy7036         241 ECRLVGEPEPTISW  254 (254)
Q Consensus       241 ~C~~~~~p~p~~~W  254 (254)
                      .|...+.|.|.++|
T Consensus       447 ~C~~~asP~p~~~W  460 (1051)
T KOG3513|consen  447 DCKPFASPKPKVSW  460 (1051)
T ss_pred             eeccCCCCcceEEE
Confidence            99999999999999

>KOG4194|consensus

Probab=99.97  E-value=9.3e-30  Score=194.20  Aligned_cols=228  Identities=23%  Similarity=0.406  Sum_probs=178.9

Q ss_pred             CCCCeeEeCCCceeecCCCeEEEEEEEee--CCCCceEEEeCCEEeeeCC--cc-eEEEee-----cCCcceEEEEEEec
Q psy7036           6 DFAPSFTQKPQLRQEDEGNRLIFECQLLC--NPKPDIVWFRGETQLSEDT--RT-VMKTTP-----IGTNKYLVALELDD   75 (254)
Q Consensus         6 ~~~p~~~~~~~~~~v~~g~~v~l~C~~~~--~~~~~v~W~~~~~~~~~~~--~~-~~~~~~-----~~~~~~~~~l~i~~   75 (254)
                      ...|++...|+.+....|++++|+|.+.+  ..+..+.|.++++......  .+ .+....     .....+.+.|.+.|
T Consensus       501 spkpqI~~qPe~~~al~g~nirftC~a~sssasplsi~WR~dnevq~rv~ved~a~~~~q~r~~~~~e~~~~~~~L~L~n  580 (873)
T KOG4194|consen  501 SPKPQIVTQPETVSALIGENIRFTCNAYSSSASPLSIEWRKDNEVQPRVDVEDFATFLSQNRNGTFGEREEYTAILHLDN  580 (873)
T ss_pred             CCCcceecCchHhhhhhccceEEEEEeccCCCCCceeEeeeccccCcccchhcchhhhhhhccCccchhhhhhheeeeee
Confidence            35789999999999999999999999976  3456899999876332110  00 000000     11123455899999


Q ss_pred             cCCCCCeEEEEEEEcCCCceE-EEEEEEEeccccCCCCCccccCCCeeeecCCCeEEEEEEEeeCCCCeEEEEECCEe-c
Q psy7036          76 VIETDAGLYKVKAKNKMGEVA-ASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQ-V  153 (254)
Q Consensus        76 ~~~~d~G~Y~C~~~~~~~~~~-~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~-~  153 (254)
                      ++..|+|.|+|++.|.+|+.. ..+.++|.      ..|.+...+.+..+..|+...|.|.+.|.|.|.|.|.|+|.. .
T Consensus       581 Vt~td~grYQCVvtN~FGStysqk~KltV~------~~PsFtktP~dltl~tg~mArl~CaAtG~P~PeIawqkdggtdF  654 (873)
T KOG4194|consen  581 VTFTDEGRYQCVVTNHFGSTYSQKAKLTVN------QAPSFTKTPEDLTLRTGQMARLECAATGHPRPEIAWQKDGGTDF  654 (873)
T ss_pred             eecccCceEEEEEecccCcchhheeEEEee------ccCccccCcccceeecccceeeeeeccCCCCcceeehhcCCCCC
Confidence            999999999999999999854 36677775      577888888999999999999999999999999999998765 5


Q ss_pred             ccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcceEEEEEEEecCCCCCCCCCCCCeeecCCccccccC
Q psy7036         154 KEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDD  233 (254)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~  233 (254)
                      +.....+.....+..    .+.|.+++.+|.|.|+|.|.|..|..++..++.|..          -|.+..+-.+..+..
T Consensus       655 PAA~eRRl~Vmpedd----~f~Itnvk~eD~GiYtC~A~n~AG~isanAtL~V~e----------~p~f~~PL~~~~V~~  720 (873)
T KOG4194|consen  655 PAARERRLHVMPEDD----VFFITNVKIEDQGIYTCTAQNVAGQISANATLTVLE----------TPSFSIPLEDQLVVV  720 (873)
T ss_pred             chhhhheeeecCCCC----EEEEecccccccceeEEeeeccccceeeceEEEEec----------CCcccccccceEEEe
Confidence            544444554444333    688999999999999999999999999999999886          445555566777888


Q ss_pred             CCCcEEEEEEEeccCC-CceeC
Q psy7036         234 DLNDIVIECRLVGEPE-PTISW  254 (254)
Q Consensus       234 g~~~~~l~C~~~~~p~-p~~~W  254 (254)
                      |+ .+.|.|.+.+.|. |.+.|
T Consensus       721 ge-t~vlqC~a~~~~a~pr~~W  741 (873)
T KOG4194|consen  721 GE-TLVLQCLAEGAPADPRLEW  741 (873)
T ss_pred             cc-eEEEEEecCCCCCCccccc
Confidence            99 9999999999987 88888

>KOG4221|consensus

Probab=99.97  E-value=7.5e-29  Score=201.50  Aligned_cols=226  Identities=27%  Similarity=0.489  Sum_probs=182.5

Q ss_pred             CCCCCCeeEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeE
Q psy7036           4 AEDFAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGL   83 (254)
Q Consensus         4 ~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~   83 (254)
                      .....+.|...+.+..+..|+++.|.|.+.+.+.+.++|.+|+.++..+.+  +....++      .|.|.++.+.|.|.
T Consensus       136 ~~a~~~~f~~~~~~~t~~~g~ta~f~c~vn~e~~p~i~w~kn~~pl~~~~r--~i~lpsG------~L~I~~~qp~d~g~  207 (1381)
T KOG4221|consen  136 ALAGLADFALQPESTTLLYGQTALFSCEVNAEPVPTIMWLKNDQPLPLDSR--VIVLPSG------ALEISGLQPSDTGE  207 (1381)
T ss_pred             EecccCccccCccceeEecCCcEEEEEEEcCccCceeEEecccccccCCCc--EEEcCCC------cEEecccccCCCce
Confidence            334567778888899999999999999999888889999999998887764  3333344      69999999999999


Q ss_pred             EEEEEEcCCCc-eEEEEEEEEeccccCCCCCccccCCCeeeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEE
Q psy7036          84 YKVKAKNKMGE-VAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFS  162 (254)
Q Consensus        84 Y~C~~~~~~~~-~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~  162 (254)
                      |+|.+.+.... ....+.|+|...+.......+...+....+..|+++.|.|.+.+.|.|.+.|.+|+..+...+ .++.
T Consensus       208 yrc~vt~g~~~r~S~~a~ltv~s~~~~~~~~~fl~~p~~~~v~~g~~v~leCvvs~~p~p~v~Wlrng~~i~~ds-~riv  286 (1381)
T KOG4221|consen  208 YRCVVTGGASQRTSNEAELTVLSDPGALNKLVFLDEPSNAVVVEGDDVVLECVVSGVPKPSVKWLRNGEKISVDS-YRIV  286 (1381)
T ss_pred             EEEEEecCCcCCccceeEEEecCCcccccceeeecCCCccccccCCcEEEEEEecCCCCCceEEeeCCeeeeecc-eEEE
Confidence            99999987644 344566777632222223335566777788899999999999999999999999999987665 4554


Q ss_pred             EcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcceEEEEEEEecCCCCCCCCCCCCeeecCCccccccCCCCcEEEEE
Q psy7036         163 IDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIEC  242 (254)
Q Consensus       163 ~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~l~C  242 (254)
                      ....+     .|.|.+++..|+|.|+|.|.|......+...+.|..          +|.|...|......++- ++.|.|
T Consensus       287 l~g~~-----slliS~a~~~dSg~YtC~Atn~~D~idasaev~V~a----------~P~~~~~p~~l~A~e~~-die~ec  350 (1381)
T KOG4221|consen  287 LVGGS-----SLLISNATDDDSGKYTCRATNTNDSIDASAEVTVLA----------PPGFTKAPTTLVAHESM-DIEFEC  350 (1381)
T ss_pred             Eeccc-----ceEEeccccccCceEEEEecCCCcccccceEEEEEc----------CCCCCCCCcceeeeecc-ceeEeC
Confidence            44333     799999999999999999999777777777788875          67788888888888877 999999


Q ss_pred             EEeccCCCceeC
Q psy7036         243 RLVGEPEPTISW  254 (254)
Q Consensus       243 ~~~~~p~p~~~W  254 (254)
                      .+.|.|.|.+.|
T Consensus       351 ~~~g~p~p~v~w  362 (1381)
T KOG4221|consen  351 PVSGKPIPTVRW  362 (1381)
T ss_pred             CCCCCCcceEEE
Confidence            999999999988

>PHA02785 IL-beta-binding protein; Provisional

Probab=99.95  E-value=1e-25  Score=169.24  Aligned_cols=206  Identities=19%  Similarity=0.292  Sum_probs=142.6

Q ss_pred             ceeecCCCeEEEEEEE-----eeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcC
Q psy7036          17 LRQEDEGNRLIFECQL-----LCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNK   91 (254)
Q Consensus        17 ~~~v~~g~~v~l~C~~-----~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~   91 (254)
                      ...+.+|+.+.|.|.+     .|.|.+.++|+|+|....   +  ......+.     .|.|.++..+|+|.|+|.+.|.
T Consensus        35 ~~~~~~ge~~~l~C~~~~~~~~g~p~~~i~W~K~g~~~~---~--~~~~~~g~-----~l~i~~~~~~DsG~Y~C~a~N~  104 (326)
T PHA02785         35 SFMELENEPVILPCPQINTLSSGYNILDILWEKRGADND---R--IIPIDNGS-----NMLILNPTQSDSGIYICITKNE  104 (326)
T ss_pred             hhhhhcCCCEEEECCCccccccCCCCceEEEEECCCccc---e--EEEccCCc-----eEEEcccCcccCeEEEEEEECC
Confidence            3456789999999997     577888999999975321   1  11111111     4789999999999999999999


Q ss_pred             CCceEEEEEEEEeccccCCCCCccccCCCeeeecCCCeEEEEEE-----EeeCCCCeEEEEECCEecccCCcceEEEcCC
Q psy7036          92 MGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECR-----IQADPAPTVIWSHSGVQVKEDKRHKFSIDKD  166 (254)
Q Consensus        92 ~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~-----~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~  166 (254)
                      .+....++.|.|....    ++.+........+.+|..+.+.|.     ..+.+++.+.|+++.. +.   ..++....+
T Consensus       105 ~g~~~~s~~L~V~~~~----~~~~~~~~~~~~~~~g~~~~i~C~~~~~~~~~~~~~~i~W~k~~~-~~---~~r~~~~~~  176 (326)
T PHA02785        105 TYCDMMSLNLTIVSVS----ESNIDLISYPQIVNERSTGEMVCPNINAFIASNVNADIIWSGHRR-LR---NKRLKQRTP  176 (326)
T ss_pred             CcceEEEEEEEEEecC----CCccceeeccceecccCcEEEECCChhhcccCCCCceEEEccCCc-cC---CcceEecCC
Confidence            8887788888886421    121211223344668899999997     2357888999987542 21   122222223


Q ss_pred             CCceeeEEEEccCCCCCceeEEEEEEcCCCcceE----EEEEEEecCCCCCCCCCCCCeeecCCccccccCCCCcEEEEE
Q psy7036         167 GHSYFASLEIIDVTIEDAGKYKVTAKNELGESNA----TISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIEC  242 (254)
Q Consensus       167 ~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~----~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~l~C  242 (254)
                      +     .|.|.+++.+|.|.|+|.+.|..+....    .+.+.|..       +..+|.+. .|....+..|+ .+.|.|
T Consensus       177 ~-----~L~i~~v~~~d~G~Y~C~~~n~~g~~~~~~t~~v~l~V~~-------~~~pp~~~-~p~~~~~~~G~-~v~L~C  242 (326)
T PHA02785        177 G-----IITIEDVRKNDAGYYTCVLKYIYGDKTYNVTRIVKLEVRD-------RIIPPTMQ-LPEGVVTSIGS-NLTIAC  242 (326)
T ss_pred             C-----eEEEeecChhhCeEEEEEEEeccCCEEEeEEEEEEEEEec-------cCCCceec-CCCcEEecCCC-cEEEEE
Confidence            2     7999999999999999999998876532    33444432       12244443 44566777888 999999


Q ss_pred             EEeccCCC---ceeC
Q psy7036         243 RLVGEPEP---TISW  254 (254)
Q Consensus       243 ~~~~~p~p---~~~W  254 (254)
                      .|.|.|.+   .++|
T Consensus       243 ~a~g~P~~~~~~v~W  257 (326)
T PHA02785        243 RVSLRPPTTDADVFW  257 (326)
T ss_pred             EEECCCCCCCceEEE
Confidence            99998874   7888

>KOG4222|consensus

Probab=99.95  E-value=7.6e-27  Score=188.94  Aligned_cols=224  Identities=26%  Similarity=0.473  Sum_probs=172.0

Q ss_pred             CCCCCCeeEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEE-EeecCCcceEEEEEEecc-----C
Q psy7036           4 AEDFAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMK-TTPIGTNKYLVALELDDV-----I   77 (254)
Q Consensus         4 ~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~i~~~-----~   77 (254)
                      ..+.+|+|+..|.+..+..|++++|.|.+.|.|.+.++|||+|+..........+ ....+      +|.+..+     .
T Consensus        27 ~qd~~p~iiehp~d~vvs~~~patlnc~asG~ppPti~w~k~G~~~~~~e~~shR~~lp~g------sLf~l~~ahg~~a  100 (1281)
T KOG4222|consen   27 AQDQPPRIIEHPHDLVVSKGEPATLNCKASGDPPPTIEWYKDGENVFKGEPGSHRFLLPDG------SLFLLRLAHGKKA  100 (1281)
T ss_pred             cccCCCceEecchhhhccCCCCceeecCCCCCCCCceecccCCcccCCCCCCCcceecCCc------cEEEEecccCCcc
Confidence            3467899999999999999999999999999999999999999754332221111 11222      2332221     2


Q ss_pred             CCCCeEEEEEEEcCCCce-EEEEEEEEeccccCCCCCccccCCCeeeecCCCeEEEEEE-EeeCCCCeEEEEECCEeccc
Q psy7036          78 ETDAGLYKVKAKNKMGEV-AASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECR-IQADPAPTVIWSHSGVQVKE  155 (254)
Q Consensus        78 ~~d~G~Y~C~~~~~~~~~-~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~-~~~~~~~~~~W~~~~~~~~~  155 (254)
                      ..|.|.|+|++.|..|.. .....|.+..     .+..+...+..+....|+.+.|.|. ..+.|.+.+.|.|+|+.+..
T Consensus       101 ~~d~G~y~cvasn~~g~avSr~a~L~vav-----lrddfrv~prd~~~a~ge~avlEcgpP~ghpeptvSw~Kdg~pl~~  175 (1281)
T KOG4222|consen  101 GHDHGVYSCVASNRLGEAVSRGASLIVAV-----LRDDFRVSPRDVQAAVGEEAVLECGPPRGHPEPTVSWVKDGKPLDH  175 (1281)
T ss_pred             cCCCceeEeeecCccceeeecCceEEEEE-----echhcccCcccccccccceeEEeccCCCCCCCCcceeecCCCcccc
Confidence            338999999999999874 3344555432     2233444455567778999999999 56788999999999999885


Q ss_pred             CCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcc-eEEEEEEEecCCCCCCCCCCCCeeecCCccccccCC
Q psy7036         156 DKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGES-NATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDD  234 (254)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~g  234 (254)
                      ...........|     .|.|.+++.+|+|.|.|.+.|..|.. +....+.|+.          +|.|...|....+..|
T Consensus       176 ~~~~~~~lisgG-----~LlIsnvrksD~GtY~CVatNmvG~ReS~~A~lsv~e----------~P~f~~rp~~~~v~~g  240 (1281)
T KOG4222|consen  176 YDVPIIALISGG-----NLLISNVRKSDEGTYACVATNMVGERESIPARLSVQE----------KPWFWKRPKDLAVLVG  240 (1281)
T ss_pred             ccceeEEEecCC-----cEEEeccccCCCceeeeeecccccccccccceeeecc----------CCccccccccceeecc
Confidence            555555455555     69999999999999999999999965 5567778875          7889999999999999


Q ss_pred             CCcEEEEEEEeccCCCceeC
Q psy7036         235 LNDIVIECRLVGEPEPTISW  254 (254)
Q Consensus       235 ~~~~~l~C~~~~~p~p~~~W  254 (254)
                      . .+.+.|.+.|+|.|.+.|
T Consensus       241 ~-~~~f~c~v~GdP~P~Vrw  259 (1281)
T KOG4222|consen  241 A-AAEFDCRVGGDPQPTVRW  259 (1281)
T ss_pred             c-ccccccccCCCCCCceee
Confidence            9 899999999999999988

>KOG4222|consensus

Probab=99.94  E-value=5.7e-26  Score=183.95  Aligned_cols=216  Identities=27%  Similarity=0.500  Sum_probs=178.4

Q ss_pred             CeeEeCCCceeecCCCeEEEEEEE-eeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEE
Q psy7036           9 PSFTQKPQLRQEDEGNRLIFECQL-LCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVK   87 (254)
Q Consensus         9 p~~~~~~~~~~v~~g~~v~l~C~~-~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~   87 (254)
                      -.|.+.|..+.+..|+.+.|.|.- .+.|.+.+.|.|+|+.+.....-.......+      .|.|.+++.+|+|.|.|+
T Consensus       132 ddfrv~prd~~~a~ge~avlEcgpP~ghpeptvSw~Kdg~pl~~~~~~~~~lisgG------~LlIsnvrksD~GtY~CV  205 (1281)
T KOG4222|consen  132 DDFRVSPRDVQAAVGEEAVLECGPPRGHPEPTVSWVKDGKPLDHYDVPIIALISGG------NLLISNVRKSDEGTYACV  205 (1281)
T ss_pred             hhcccCcccccccccceeEEeccCCCCCCCCcceeecCCCccccccceeEEEecCC------cEEEeccccCCCceeeee
Confidence            346677888888999999999986 6688999999999998873322222222222      699999999999999999


Q ss_pred             EEcCCCce-EEEEEEEEeccccCCCCCccccCCCeeeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCC
Q psy7036          88 AKNKMGEV-AASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKD  166 (254)
Q Consensus        88 ~~~~~~~~-~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~  166 (254)
                      +.|..|.. +...+|.|.      .+|.+...+....+..|..+.+.|.+.|.|.|.+.|.+.+..+....   ..+..+
T Consensus       206 atNmvG~ReS~~A~lsv~------e~P~f~~rp~~~~v~~g~~~~f~c~v~GdP~P~Vrwkk~~~~~P~~r---y~i~~d  276 (1281)
T KOG4222|consen  206 ATNMVGERESIPARLSVQ------EKPWFWKRPKDLAVLVGAAAEFDCRVGGDPQPTVRWKKDDPSLPRSR---YSILDD  276 (1281)
T ss_pred             ecccccccccccceeeec------cCCccccccccceeecccccccccccCCCCCCceeeeccCCCCCccc---eeeeec
Confidence            99999874 456788887      56777778888888899999999999999999999999776664332   222223


Q ss_pred             CCceeeEEEEccCCCCCceeEEEEEEcCCCcceEEEEEEEecCCCCCCCCCCCCeeecCCccccccCCCCcEEEEEEEec
Q psy7036         167 GHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLVG  246 (254)
Q Consensus       167 ~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~l~C~~~~  246 (254)
                      ..    +|.|.+++..|.|.|.|.+.|..|.......+.|+.          +|.|...|....+..|+ .++|.|.+.|
T Consensus       277 ~q----tl~i~r~tp~deg~y~C~a~n~vG~l~asa~ltV~a----------pP~f~kkp~dq~v~lg~-~vt~pc~~~g  341 (1281)
T KOG4222|consen  277 TQ----TLRIDRVTPTDEGTYVCPAENLVGGLEASATLTVQA----------PPSFGKKPRDQKVALGG-TVTFPCETLG  341 (1281)
T ss_pred             cc----cccccccCCCcccceeeeccccccccccccceEEec----------CcccccccCccccccCc-eEEeeeecCC
Confidence            22    799999999999999999999999998888888986          78899999999999999 9999999999


Q ss_pred             cCCCceeC
Q psy7036         247 EPEPTISW  254 (254)
Q Consensus       247 ~p~p~~~W  254 (254)
                      +|.|.+.|
T Consensus       342 nP~PavfW  349 (1281)
T KOG4222|consen  342 NPPPAVFW  349 (1281)
T ss_pred             CCCcceEE
Confidence            99999988

>KOG4194|consensus

Probab=99.94  E-value=2.4e-25  Score=170.35  Aligned_cols=189  Identities=24%  Similarity=0.415  Sum_probs=152.0

Q ss_pred             CCCCCCCeeEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeCCEE-eeeCCcceEEEeecCCcceEEEEEEeccCCCCC
Q psy7036           3 IAEDFAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQ-LSEDTRTVMKTTPIGTNKYLVALELDDVIETDA   81 (254)
Q Consensus         3 ~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~   81 (254)
                      ++++..|.|+..|.+..+..|+.+.|.|.+.|.|.|++.|.|+|.. .+.....++...++..     .+.|.|++.+|.
T Consensus       607 ltV~~~PsFtktP~dltl~tg~mArl~CaAtG~P~PeIawqkdggtdFPAA~eRRl~Vmpedd-----~f~Itnvk~eD~  681 (873)
T KOG4194|consen  607 LTVNQAPSFTKTPEDLTLRTGQMARLECAATGHPRPEIAWQKDGGTDFPAARERRLHVMPEDD-----VFFITNVKIEDQ  681 (873)
T ss_pred             EEeeccCccccCcccceeecccceeeeeeccCCCCcceeehhcCCCCCchhhhheeeecCCCC-----EEEEeccccccc
Confidence            4677899999999999999999999999999999999999998875 4443334444444433     799999999999


Q ss_pred             eEEEEEEEcCCCceEEEEEEEEeccccCCCCCccccCCCeeeecCCCeEEEEEEEeeCCC-CeEEEEECCEecccCCcce
Q psy7036          82 GLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQADPA-PTVIWSHSGVQVKEDKRHK  160 (254)
Q Consensus        82 G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~-~~~~W~~~~~~~~~~~~~~  160 (254)
                      |.|+|.+.|..|..++.+++.|.+.+      .+........+..|+.+.|.|.+.+.|. |.+.|+|+++++....+..
T Consensus       682 GiYtC~A~n~AG~isanAtL~V~e~p------~f~~PL~~~~V~~get~vlqC~a~~~~a~pr~~W~k~d~pil~t~rh~  755 (873)
T KOG4194|consen  682 GIYTCTAQNVAGQISANATLTVLETP------SFSIPLEDQLVVVGETLVLQCLAEGAPADPRLEWFKEDKPILITERHT  755 (873)
T ss_pred             ceeEEeeeccccceeeceEEEEecCC------cccccccceEEEecceEEEEEecCCCCCCccccccCCCCceEEeeccc
Confidence            99999999999999999999998633      3333445667778999999999999887 8999999998876555433


Q ss_pred             EEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcceEEEEEEEec
Q psy7036         161 FSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFDS  208 (254)
Q Consensus       161 ~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~v~~  208 (254)
                      +.. .+.     -|.+.+...+|+|.|+|...+..|.....+.+.+..
T Consensus       756 f~d-~dQ-----llvv~~~~~~daG~yTcem~~~~~~~~~~i~l~~~~  797 (873)
T KOG4194|consen  756 FPD-GDQ-----LLVVKENLVEDAGIYTCEMSNTLGTERIHICLLVYQ  797 (873)
T ss_pred             CCC-CCe-----EEEEEehhhhhcceEEEEEEeeccceeeEEEEEEee
Confidence            321 121     688888889999999999999999877766665553

>PHA02826 IL-1 receptor-like protein; Provisional

Probab=99.93  E-value=9.5e-24  Score=149.40  Aligned_cols=163  Identities=19%  Similarity=0.269  Sum_probs=115.5

Q ss_pred             CCCceeecCCCeEEEEEEEeeC-----------CCCceEEEeCCEEe--eeC-Ccc--e-EEEeecCCcceEEEEEEecc
Q psy7036          14 KPQLRQEDEGNRLIFECQLLCN-----------PKPDIVWFRGETQL--SED-TRT--V-MKTTPIGTNKYLVALELDDV   76 (254)
Q Consensus        14 ~~~~~~v~~g~~v~l~C~~~~~-----------~~~~v~W~~~~~~~--~~~-~~~--~-~~~~~~~~~~~~~~l~i~~~   76 (254)
                      ....+.+.+|++|.|.|.+.+.           ..+.+.|+|++...  ... .+.  . ......+  .....|+|.++
T Consensus        28 ~~~~~~v~eGe~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~~s~~~v~~~~~~~~~~~i~~~~~~--~r~~~L~I~~v  105 (227)
T PHA02826         28 DLTPVYAKFGDPMVLLCTGKHYKKSIFFDKTFITSYNVTWSKTDSLAFVRDSGARTKIKKITHNEIG--DRSENLWIGNV  105 (227)
T ss_pred             CcceEEecCCCCEEEEccccccccccccccccCCCccEEEEeCCeEEEEEcCCCcccccccccccee--cCCCeEEECCC
Confidence            3456788999999999998653           34589999988642  111 110  0 0000000  01227999999


Q ss_pred             CCCCCeEEEEEEEcCCCceEEEEEEEEeccccCCCCCccccCCCeeeecCCCeEEEEEEEe-----eCCCCeEEEEECCE
Q psy7036          77 IETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQ-----ADPAPTVIWSHSGV  151 (254)
Q Consensus        77 ~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~-----~~~~~~~~W~~~~~  151 (254)
                      +.+|+|.|+|.+.|..+.....+.|.|..      ++      ....+.+|+.+.|.|.+.     +.|.|.+.|+|++.
T Consensus       106 ~~~DsG~Y~C~a~N~~~~~~~~i~L~V~~------~~------~~~~~~~G~~v~L~C~~~~~~~~~~p~p~I~WyKng~  173 (227)
T PHA02826        106 INIDEGIYICTISSGNICEESTIRLTFDS------GT------INYQFNSGKDSKLHCYGTDGISSTFKDYTLTWYKNGN  173 (227)
T ss_pred             ChHHCEEEEEEEEECCcceEEEEEEEEec------CC------ccceEecCCCEEEEeeCCCCccccCCCceEEEEECCE
Confidence            99999999999999888877788887742      11      123456799999999975     34578999999999


Q ss_pred             ecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCC
Q psy7036         152 QVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELG  196 (254)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~  196 (254)
                      .+......  ....++    ..|.|.+++.+|+|.|+|.|.....
T Consensus       174 ~l~~~~r~--~~~~~~----~~L~I~~V~~~DsG~YtC~a~~~~~  212 (227)
T PHA02826        174 IVLYTDRI--QLRNNN----STLVIKSATHDDSGIYTCNLRFNKN  212 (227)
T ss_pred             ECCCCCCE--EEeCCC----CEEEECcCCHHhCEEEEEEEEEeEC
Confidence            98754432  222222    1799999999999999999998653

>KOG4221|consensus

Probab=99.92  E-value=7.6e-24  Score=172.79  Aligned_cols=210  Identities=23%  Similarity=0.421  Sum_probs=163.1

Q ss_pred             eEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEc
Q psy7036          11 FTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKN   90 (254)
Q Consensus        11 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~   90 (254)
                      |...|....+.+|+++.|.|.+.+.|.|.|.|.||+..+..+. .++......      .|.|.+++..|+|.|+|.+.|
T Consensus       240 fl~~p~~~~v~~g~~v~leCvvs~~p~p~v~Wlrng~~i~~ds-~rivl~g~~------slliS~a~~~dSg~YtC~Atn  312 (1381)
T KOG4221|consen  240 FLDEPSNAVVVEGDDVVLECVVSGVPKPSVKWLRNGEKISVDS-YRIVLVGGS------SLLISNATDDDSGKYTCRATN  312 (1381)
T ss_pred             eecCCCccccccCCcEEEEEEecCCCCCceEEeeCCeeeeecc-eEEEEeccc------ceEEeccccccCceEEEEecC
Confidence            6778888899999999999999999999999999999988765 334332222      799999999999999999999


Q ss_pred             CCCceEEEEEEEEeccccCCCCCccccCCCeeeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCCCCce
Q psy7036          91 KMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSY  170 (254)
Q Consensus        91 ~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~  170 (254)
                      ..-...+...|.|.      .+|.+...+......++.++.|.|.+.+.|.+.+.|+|||..+..++.+++  ..++   
T Consensus       313 ~~D~idasaev~V~------a~P~~~~~p~~l~A~e~~die~ec~~~g~p~p~v~w~kNgd~~ipsdy~ki--~~~~---  381 (1381)
T KOG4221|consen  313 TNDSIDASAEVTVL------APPGFTKAPTTLVAHESMDIEFECPVSGKPIPTVRWYKNGDRIIPSDYFKI--VGGG---  381 (1381)
T ss_pred             CCcccccceEEEEE------cCCCCCCCCcceeeeeccceeEeCCCCCCCcceEEEEecCcccCcccceEe--cCCC---
Confidence            66666677777886      578888888888888899999999999999999999999998877555443  3333   


Q ss_pred             eeEEEEccCCCCCceeEEEEEEcCCCcceEEEEEEEecCCCCCCCCCCCCeeecCCccccccCCCCcEEEEEEEe
Q psy7036         171 FASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLV  245 (254)
Q Consensus       171 ~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~l~C~~~  245 (254)
                        .|.|..+-..|.|.|.|.++|..|.+.....+.+......    ...+.+...|..+.+..-+ ...+.|...
T Consensus       382 --~lrIlgi~~sdeg~yQcvaen~~G~a~a~a~l~vv~~p~~----~~s~~~~sap~~lv~~~~~-srfi~~tw~  449 (1381)
T KOG4221|consen  382 --NLRILGIVKSDEGFYQCVAENDAGSAQAAAQLEVVPQPAS----ASSDLLPSAPRDLVANLVS-SRFIQLTWR  449 (1381)
T ss_pred             --CcEEEEEecccchhhhhhhccCcccccchhhheeccCCcc----cccCccccCCcceeccccc-ceeEEEeec
Confidence              3777888889999999999999999888777755432111    1223444445555455455 667777665

>PHA02785 IL-beta-binding protein; Provisional

Probab=99.90  E-value=2.7e-21  Score=145.51  Aligned_cols=175  Identities=22%  Similarity=0.324  Sum_probs=116.9

Q ss_pred             CeeEeCCCceeecCCCeEEEEEEE-----eeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeE
Q psy7036           9 PSFTQKPQLRQEDEGNRLIFECQL-----LCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGL   83 (254)
Q Consensus         9 p~~~~~~~~~~v~~g~~v~l~C~~-----~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~   83 (254)
                      |.+...+....+.+|..+.|.|..     .+.+.+.++|++++. +. ..++  .....      ..|.|.+++.+|+|.
T Consensus       122 ~~~~~~~~~~~~~~g~~~~i~C~~~~~~~~~~~~~~i~W~k~~~-~~-~~r~--~~~~~------~~L~i~~v~~~d~G~  191 (326)
T PHA02785        122 SNIDLISYPQIVNERSTGEMVCPNINAFIASNVNADIIWSGHRR-LR-NKRL--KQRTP------GIITIEDVRKNDAGY  191 (326)
T ss_pred             CccceeeccceecccCcEEEECCChhhcccCCCCceEEEccCCc-cC-Ccce--EecCC------CeEEEeecChhhCeE
Confidence            333333344557799999999972     356888999998653 22 1221  11111      179999999999999


Q ss_pred             EEEEEEcCCCceEE----EEEEEEeccccCCCCCccccCCCeeeecCCCeEEEEEEEeeCCC---CeEEEEECCEecccC
Q psy7036          84 YKVKAKNKMGEVAA----SINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQADPA---PTVIWSHSGVQVKED  156 (254)
Q Consensus        84 Y~C~~~~~~~~~~~----~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~---~~~~W~~~~~~~~~~  156 (254)
                      |+|.+.|..+....    .+.|.|...   ..+|.+ ..+....+..|+.+.|.|.+.+.|.   +.+.|++||..+...
T Consensus       192 Y~C~~~n~~g~~~~~~t~~v~l~V~~~---~~pp~~-~~p~~~~~~~G~~v~L~C~a~g~P~~~~~~v~W~kng~~i~~~  267 (326)
T PHA02785        192 YTCVLKYIYGDKTYNVTRIVKLEVRDR---IIPPTM-QLPEGVVTSIGSNLTIACRVSLRPPTTDADVFWISNGMYYEED  267 (326)
T ss_pred             EEEEEEeccCCEEEeEEEEEEEEEecc---CCCcee-cCCCcEEecCCCcEEEEEEEECCCCCCCceEEEEECCEECCCc
Confidence            99999998776432    334444321   133332 3345566778999999999998876   479999999987543


Q ss_pred             Cc---ceEEEcCC------CCceeeEEEEccCCCCCceeEEEEEEcCCCc
Q psy7036         157 KR---HKFSIDKD------GHSYFASLEIIDVTIEDAGKYKVTAKNELGE  197 (254)
Q Consensus       157 ~~---~~~~~~~~------~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~  197 (254)
                      ..   .++.....      .......|.|.+++.+|.|.|+|.|.|..+.
T Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~V~~~D~G~Y~C~A~n~~~~  317 (326)
T PHA02785        268 DEDGDGRISVANKIYTTDKRRVITSRLNINPVKEEDATTFTCMAFTIPSI  317 (326)
T ss_pred             CCCCceeEEEecCccccccceeeeEEEEECCcchhcCeeeEEEEEeccCc
Confidence            21   12222111      1112457999999999999999999998743

>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK)

Probab=99.85  E-value=5.5e-20  Score=113.77  Aligned_cols=93  Identities=19%  Similarity=0.345  Sum_probs=80.8

Q ss_pred             CeeEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEE
Q psy7036           9 PSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKA   88 (254)
Q Consensus         9 p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~   88 (254)
                      |.|...|+...+..|+++.|.|.+.|.|.+.+.|+|+|..+....++.+....     ..+.|.|.++...|+|.|+|.+
T Consensus         1 p~~~~~p~~~~v~~G~~v~l~C~~~G~p~p~v~W~kdg~~l~~~~~~~~~~~~-----~~s~L~I~~~~~~D~G~Ytc~a   75 (98)
T cd05762           1 PQIIQFPEDMKVRAGESVELFCKVTGTQPITCTWMKFRKQIQEGEGIKIENTE-----NSSKLTITEGQQEHCGCYTLEV   75 (98)
T ss_pred             CceEECCcCEEEECCCEEEEEEEEcccCCCceEEEECCEEecCCCcEEEEecC-----CeeEEEECCCChhhCEEEEEEE
Confidence            78899999999999999999999999999999999999999766554443221     2238999999999999999999


Q ss_pred             EcCCCceEEEEEEEEecc
Q psy7036          89 KNKMGEVAASINLNFSRE  106 (254)
Q Consensus        89 ~~~~~~~~~~~~l~v~~~  106 (254)
                      .|..|.....+.|.|.+.
T Consensus        76 ~N~~G~~~~~~~l~V~~~   93 (98)
T cd05762          76 ENKLGSRQAQVNLTVVDK   93 (98)
T ss_pred             EcCCCceeEEEEEEEecC
Confidence            999999999999999753

Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has

>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1

Probab=99.81  E-value=3.4e-19  Score=108.17  Aligned_cols=87  Identities=22%  Similarity=0.331  Sum_probs=74.1

Q ss_pred             CCeeEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEE
Q psy7036           8 APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVK   87 (254)
Q Consensus         8 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~   87 (254)
                      +|.|...+.+..+.+|+.+.|.|.+.|.|.|.++|+|++..+....+...    .+     ..|.|.+++.+|+|.|+|.
T Consensus         1 ~p~i~~~~~~~~~~~G~~v~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~----~~-----~~L~I~~v~~~D~G~Y~C~   71 (88)
T cd05851           1 PADINVKFKDTYALKGQNVTLECFALGNPVPVIRWRKILEPMPATAEISM----SG-----AVLKIFNIQPEDEGTYECE   71 (88)
T ss_pred             CCceEEccccEEEeCCCcEEEEEEecccCCCEEEEEECCcCCCCCCEEec----CC-----CEEEECcCChhhCEEEEEE
Confidence            58899999999999999999999999999999999999887654322211    11     1699999999999999999


Q ss_pred             EEcCCCceEEEEEEEE
Q psy7036          88 AKNKMGEVAASINLNF  103 (254)
Q Consensus        88 ~~~~~~~~~~~~~l~v  103 (254)
                      +.|..|.....+.|.|
T Consensus        72 A~N~~G~~~~~~~l~V   87 (88)
T cd05851          72 AENIKGKDKHQARVYV   87 (88)
T ss_pred             EEcCCCceEEEEEEEE
Confidence            9999999888888776

Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins

Probab=99.80  E-value=2.3e-18  Score=105.75  Aligned_cols=90  Identities=26%  Similarity=0.495  Sum_probs=75.9

Q ss_pred             CCCeeEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEE
Q psy7036           7 FAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKV   86 (254)
Q Consensus         7 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C   86 (254)
                      .+|.|...|....+.+|+.+.|.|.+.+.|.+.+.|+|+|..+....++.+...     ...+.|.|.++...|+|.|+|
T Consensus         2 ~~~~~~~~p~~~~~~~G~~~~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~-----~~~~~L~i~~~~~~D~G~Y~C   76 (92)
T cd05747           2 LPATILTKPRSLTVSEGESARFSCDVDGEPAPTVTWMREGQIIVSSQRHQITST-----EYKSTFEISKVQMSDEGNYTV   76 (92)
T ss_pred             CCCcccccCccEEEeCCCcEEEEEEEeecCCCEEEEEECCEECCCCCcEEEEEc-----CCeeEEEECCCCcccCEeEEE
Confidence            578999999999999999999999999999999999999998876555444321     122489999999999999999


Q ss_pred             EEEcCCCceEEEEEE
Q psy7036          87 KAKNKMGEVAASINL  101 (254)
Q Consensus        87 ~~~~~~~~~~~~~~l  101 (254)
                      .+.|..|.....+.|
T Consensus        77 ~a~N~~G~~~~~~~l   91 (92)
T cd05747          77 VVENSEGKQEAQFTL   91 (92)
T ss_pred             EEEcCCCCEeEEEEe
Confidence            999999987776655

Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.

>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=99.78  E-value=6.2e-18  Score=103.89  Aligned_cols=90  Identities=32%  Similarity=0.601  Sum_probs=79.5

Q ss_pred             CeeEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEE
Q psy7036           9 PSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKA   88 (254)
Q Consensus         9 p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~   88 (254)
                      |.|...+....+.+|+++.|.|.+.+.|.+.+.|++++..+....+..+....     ..+.|.|.++..+|+|.|+|.+
T Consensus         1 P~~~~~~~~~~v~~G~~~~l~c~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~-----~~~~L~I~~v~~~D~G~Y~C~~   75 (90)
T PF07679_consen    1 PVFTKKPKDVTVKEGESVTLECEVSGNPPPTVTWYKNGRPLTSSQRYQIESDG-----GSSSLTIKNVTREDAGTYTCVA   75 (90)
T ss_dssp             EEEEEESSEEEEETTSEEEEEEEEEESSSSEEEEEETTEEEESSSSEEEEEET-----TEEEEEESSESGGGSEEEEEEE
T ss_pred             CEEEEecCCEEEeCCCEEEEEEEEEeCCCCcccccccccceeeeeeeeeeccc-----ceeEEccCCCChhhCEEEEEEE
Confidence            78899999999999999999999999999999999999999987776665433     3448999999999999999999


Q ss_pred             EcCCCceEEEEEEEE
Q psy7036          89 KNKMGEVAASINLNF  103 (254)
Q Consensus        89 ~~~~~~~~~~~~l~v  103 (254)
                      .|..|.....+.|.|
T Consensus        76 ~n~~g~~~~~~~l~V   90 (90)
T PF07679_consen   76 SNSSGEATASVNLTV   90 (90)
T ss_dssp             EETTEEEEEEEEEEE
T ss_pred             EECCCEEEEEEEEEC
Confidence            999998888887765

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....

>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK)

Probab=99.78  E-value=1.7e-17  Score=102.67  Aligned_cols=91  Identities=20%  Similarity=0.361  Sum_probs=75.1

Q ss_pred             cccCCCeeeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcC
Q psy7036         115 FLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNE  194 (254)
Q Consensus       115 ~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~  194 (254)
                      +...+....+..|+.+.|.|.+.|.|++.+.|+|++..+....+..+......    +.|.|.++..+|+|.|+|.|.|.
T Consensus         3 ~~~~p~~~~v~~G~~v~l~C~~~G~p~p~v~W~kdg~~l~~~~~~~~~~~~~~----s~L~I~~~~~~D~G~Ytc~a~N~   78 (98)
T cd05762           3 IIQFPEDMKVRAGESVELFCKVTGTQPITCTWMKFRKQIQEGEGIKIENTENS----SKLTITEGQQEHCGCYTLEVENK   78 (98)
T ss_pred             eEECCcCEEEECCCEEEEEEEEcccCCCceEEEECCEEecCCCcEEEEecCCe----eEEEECCCChhhCEEEEEEEEcC
Confidence            34455667888999999999999999999999999999875554433322222    48999999999999999999999


Q ss_pred             CCcceEEEEEEEecC
Q psy7036         195 LGESNATISLNFDSD  209 (254)
Q Consensus       195 ~~~~~~~~~~~v~~~  209 (254)
                      .|....++.|.|...
T Consensus        79 ~G~~~~~~~l~V~~~   93 (98)
T cd05762          79 LGSRQAQVNLTVVDK   93 (98)
T ss_pred             CCceeEEEEEEEecC
Confidence            999999999988763

Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has

>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins

Probab=99.77  E-value=1.4e-17  Score=103.08  Aligned_cols=89  Identities=19%  Similarity=0.312  Sum_probs=70.8

Q ss_pred             CceeecCCCeEEEEEEEee-CCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcCCCc
Q psy7036          16 QLRQEDEGNRLIFECQLLC-NPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGE   94 (254)
Q Consensus        16 ~~~~v~~g~~v~l~C~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~   94 (254)
                      ....+.+|+++.|.|.+.| .|.|.+.|+|||..+.....................|.|.+++.+|+|.|+|.|.|..|.
T Consensus        11 ~~~~v~~G~~v~L~c~v~g~~P~p~v~W~Kdg~~i~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~G~   90 (101)
T cd04975          11 TTIFVNLGENLNLVVEVEAYPPPPHINWTYDNRTLTNKLTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSDAS   90 (101)
T ss_pred             ceEEEECCCCEEEEEEEEecCCCCccEEEeCCeeCCCCcceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCCcc
Confidence            4567899999999999999 899999999999998754433222211112234568999999999999999999999999


Q ss_pred             eEEEEEEEEe
Q psy7036          95 VAASINLNFS  104 (254)
Q Consensus        95 ~~~~~~l~v~  104 (254)
                      ....+.|.|.
T Consensus        91 ~~~t~~L~V~  100 (101)
T cd04975          91 KSLTFELYVN  100 (101)
T ss_pred             EEEEEEEEEE
Confidence            8888888774

Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes

>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=99.76  E-value=9.2e-18  Score=101.38  Aligned_cols=84  Identities=27%  Similarity=0.530  Sum_probs=71.3

Q ss_pred             eEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEc
Q psy7036          11 FTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKN   90 (254)
Q Consensus        11 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~   90 (254)
                      |...|.+..+.+|+++.|.|.+.|.|.+.+.|+|++..+....+....   .+      .|.|.+++..|+|.|+|.+.|
T Consensus         2 ~~~~p~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~---~~------~L~i~~~~~~D~G~Y~C~a~N   72 (85)
T cd05728           2 WLKVISDTEADIGSSLRWECKASGNPRPAYRWLKNGQPLASENRIEVE---AG------DLRITKLSLSDSGMYQCVAEN   72 (85)
T ss_pred             ccccCCccEEcCCCcEEEEEEeeEeCCCEEEEEECCEECCCCCeEEEe---CC------EEEEeeCCHHHCEEEEEEEEC
Confidence            566788889999999999999999999999999999988665443321   11      699999999999999999999


Q ss_pred             CCCceEEEEEEEE
Q psy7036          91 KMGEVAASINLNF  103 (254)
Q Consensus        91 ~~~~~~~~~~l~v  103 (254)
                      ..|....++.|.|
T Consensus        73 ~~G~~~~~~~l~V   85 (85)
T cd05728          73 KHGTIYASAELAV   85 (85)
T ss_pred             CCCeEEEEEEEEC
Confidence            9999888887764

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein

Probab=99.76  E-value=2.2e-17  Score=101.37  Aligned_cols=86  Identities=22%  Similarity=0.465  Sum_probs=70.3

Q ss_pred             CCCceeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcCCC
Q psy7036          14 KPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMG   93 (254)
Q Consensus        14 ~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~   93 (254)
                      .|..+.+.+|+++.|.|.+.|.|.|.+.|+|++..+....++.+.....    ....|.|.+++..|+|.|+|.+.|..|
T Consensus         7 lp~~v~v~~G~~v~L~C~v~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~----~~~~L~I~~v~~~D~G~Y~C~a~N~~G   82 (92)
T cd05737           7 LPDVVTIMEGKTLNLTCTVFGDPDPEVSWLKNDQALALSDHYNVKVEQG----KYASLTIKGVSSEDSGKYGIVVKNKYG   82 (92)
T ss_pred             CCceEEEeCCCcEEEEEEEEecCCCeEEEEECCEECccCCCEEEEEcCC----CEEEEEEccCChhhCEEEEEEEEECCC
Confidence            4556788999999999999999999999999999987665554432211    123799999999999999999999999


Q ss_pred             ceEEEEEEEE
Q psy7036          94 EVAASINLNF  103 (254)
Q Consensus        94 ~~~~~~~l~v  103 (254)
                      .....+.|.|
T Consensus        83 ~~~~~~~v~v   92 (92)
T cd05737          83 GETVDVTVSV   92 (92)
T ss_pred             cceEEEEEeC
Confidence            9888777654

Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.

>cd04968 Ig3_Contactin_like Third Ig domain of contactin

Probab=99.75  E-value=3.9e-17  Score=99.55  Aligned_cols=87  Identities=20%  Similarity=0.324  Sum_probs=71.9

Q ss_pred             CCeeEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEE
Q psy7036           8 APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVK   87 (254)
Q Consensus         8 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~   87 (254)
                      +|.+...|....+.+|+++.|.|.+.|.|.+.++|+|++..+.......   ...      ..|.|.+++.+|+|.|+|.
T Consensus         1 p~~~~~~p~~~~~~~g~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~---~~~------~~L~i~~v~~~D~G~Y~C~   71 (88)
T cd04968           1 PSIIVVFPKDTYALKGQNVTLECFALGNPVPQIKWRKVDGSMPSSAEIS---MSG------AVLKIPNIQFEDEGTYECE   71 (88)
T ss_pred             CCcEEECCCceEEeCCCcEEEEEEeeEeCCCEEEEEECCCcCCCccEEE---EeC------CEEEECCCCcccCEEEEEE
Confidence            4667788888899999999999999999999999999887654332211   111      2799999999999999999


Q ss_pred             EEcCCCceEEEEEEEE
Q psy7036          88 AKNKMGEVAASINLNF  103 (254)
Q Consensus        88 ~~~~~~~~~~~~~l~v  103 (254)
                      +.|..|.......|.|
T Consensus        72 a~N~~G~~~~~~~l~V   87 (88)
T cd04968          72 AENIKGKDTHQGRIYV   87 (88)
T ss_pred             EEECCCcEEEEEEEEE
Confidence            9999999888888776

Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=99.75  E-value=4.8e-17  Score=100.89  Aligned_cols=93  Identities=22%  Similarity=0.376  Sum_probs=71.8

Q ss_pred             CCeeEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCc---ceEEEeecCCcceEEEEEEeccCCCCCeEE
Q psy7036           8 APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTR---TVMKTTPIGTNKYLVALELDDVIETDAGLY   84 (254)
Q Consensus         8 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y   84 (254)
                      .|.|...+....+..|+.++|.|.+.|.|.|.++|++++..+.....   .++....   ....+.|.|.+++..|+|.|
T Consensus         2 ~p~i~~~~~~~~~~~g~~v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~v~~---~~~~~~L~I~~v~~~D~G~Y   78 (97)
T cd05869           2 KPKITYVENQTAMELEEQITLTCEASGDPIPSITWRTSTRNISSEEKTLDGHIVVRS---HARVSSLTLKYIQYTDAGEY   78 (97)
T ss_pred             CceEEEccCceEEEcCCCEEEEEEeeEeCCCEEEEEECCccccCCccccCccEEEEc---CccEEEEEEecCccCcCEEE
Confidence            57888777776677789999999999999999999999877643211   1111111   12234799999999999999


Q ss_pred             EEEEEcCCCceEEEEEEEE
Q psy7036          85 KVKAKNKMGEVAASINLNF  103 (254)
Q Consensus        85 ~C~~~~~~~~~~~~~~l~v  103 (254)
                      +|.+.|..|.....+.|.|
T Consensus        79 ~C~A~N~~G~~~~~~~l~v   97 (97)
T cd05869          79 LCTASNTIGQDSQSMYLEV   97 (97)
T ss_pred             EEEEecCCCCeeEEEEEEC
Confidence            9999999999888887764

Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr

>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C)

Probab=99.74  E-value=5.7e-17  Score=97.82  Aligned_cols=82  Identities=23%  Similarity=0.446  Sum_probs=67.1

Q ss_pred             ceeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeC-CcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcCCCce
Q psy7036          17 LRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSED-TRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGEV   95 (254)
Q Consensus        17 ~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~   95 (254)
                      .+.+.+|+++.|.|.+.|.|.|.+.|+|++..+... .++.+...  .   ..+.|.|.++...|+|.|+|.+.|..|..
T Consensus         4 ~~~v~~G~~v~l~c~~~G~P~P~v~W~k~~~~i~~~~~r~~~~~~--~---~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~   78 (86)
T cd05894           4 TIVVVAGNKLRLDVPISGEPAPTVTWSRGDKAFTETEGRVRVESY--K---DLSSFVIEGAEREDEGVYTITVTNPVGED   78 (86)
T ss_pred             EEEEEcCCEEEEEeeEeecCCCeEEEEECCEECccCCCeEEEEEc--C---CeEEEEECCCccCcCEEEEEEEEeCCCcE
Confidence            457889999999999999999999999999988653 23333221  1   13479999999999999999999999998


Q ss_pred             EEEEEEEE
Q psy7036          96 AASINLNF  103 (254)
Q Consensus        96 ~~~~~l~v  103 (254)
                      ...+.|.|
T Consensus        79 ~~~~~l~V   86 (86)
T cd05894          79 HASLFVKV   86 (86)
T ss_pred             EEEEEEEC
Confidence            88887764

Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.

>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=99.74  E-value=9e-17  Score=98.28  Aligned_cols=87  Identities=16%  Similarity=0.318  Sum_probs=69.2

Q ss_pred             EeCCCceeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcC
Q psy7036          12 TQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNK   91 (254)
Q Consensus        12 ~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~   91 (254)
                      ...|+...+.+|+.+.|.|.+.|.|.|.+.|++++..+..........     ......|.|.+++..|.|.|+|.+.|.
T Consensus         4 v~~p~~~~v~~G~~v~l~C~~~G~P~p~v~W~~~g~~~~~~~~~~~~~-----~~~~~~L~I~~v~~~D~g~Y~C~A~N~   78 (90)
T cd04972           4 VDGPNATVVYEGGTATIRCTAEGSPLPKVEWIIAGLIVIQTRTDTLET-----TVDIYNLQLSNITSETQTTVTCTAENP   78 (90)
T ss_pred             ccCCcCEEEcCCCcEEEEEEEEEcCCCeEEEEECCEEccCCccEEEEe-----cCCEEEEEEecCCcccCEEEEEEEECC
Confidence            456667779999999999999999999999999998875433321111     112337999999999999999999999


Q ss_pred             CCceEEEEEEEE
Q psy7036          92 MGEVAASINLNF  103 (254)
Q Consensus        92 ~~~~~~~~~l~v  103 (254)
                      .|.....+.|.|
T Consensus        79 ~G~~~~~~~L~v   90 (90)
T cd04972          79 VGQANVSVQVTV   90 (90)
T ss_pred             CCceeEEEEEeC
Confidence            999888877764

TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo

>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=99.73  E-value=1.8e-16  Score=96.16  Aligned_cols=82  Identities=17%  Similarity=0.323  Sum_probs=66.5

Q ss_pred             CCeEEEEEEEeeCCCCceEEEeCCEEeeeCC-cceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcCCCceEEEEEE
Q psy7036          23 GNRLIFECQLLCNPKPDIVWFRGETQLSEDT-RTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINL  101 (254)
Q Consensus        23 g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l  101 (254)
                      |+.++|.|.+.|.|.+.+.|+|++..+.... ++.+... ..+....+.|.|.++...|+|.|+|.|.|..|.....+.|
T Consensus         1 g~~~~l~C~~~g~p~~~i~W~k~~~~i~~~~~r~~~~~~-~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~L   79 (88)
T cd05735           1 GQKKEMSCTAHGEKPIIVRWEKEDRIINPEMSRYLVSTK-EVGDEVISTLQILPTVREDSGFFSCHAINSYGEDRGIIQL   79 (88)
T ss_pred             CCeEEEEEEEECCCCCEEEEeeCCEECCCCCCcEEEEEe-cCCCcEEEEEEECCCCcccCEEEEEEEEcCCCcceEEEEE
Confidence            7899999999999999999999998875432 3333221 1223445689999999999999999999999999999999


Q ss_pred             EEec
Q psy7036         102 NFSR  105 (254)
Q Consensus       102 ~v~~  105 (254)
                      .|.+
T Consensus        80 ~V~~   83 (88)
T cd05735          80 TVQE   83 (88)
T ss_pred             EEeC
Confidence            9874

Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.73  E-value=4e-17  Score=95.94  Aligned_cols=74  Identities=32%  Similarity=0.556  Sum_probs=61.9

Q ss_pred             CCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcCCCceEEEEEE
Q psy7036          22 EGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINL  101 (254)
Q Consensus        22 ~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l  101 (254)
                      +|+++.|.|.+.|.|.|.++|+|++..+....+..+  ...+      .|.|.+++..|+|.|+|.+.|..|.....+.|
T Consensus         1 eG~~v~l~C~~~g~P~p~i~W~k~g~~~~~~~~~~~--~~~~------~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~L   72 (74)
T cd05745           1 EGQTVDFLCEAQGYPQPVIAWTKGGSQLSVDRRHLV--LSSG------TLRISRVALHDQGQYECQAVNIVGSQRTVAQL   72 (74)
T ss_pred             CCCeEEEEeECCEecCCEEEEEECCEECCCCCCeEE--ccCC------eEEEeeCCHHhCEEEEEEEEeCCCceeEEEEE
Confidence            689999999999999999999999998865443322  1111      79999999999999999999999998888877


Q ss_pred             EE
Q psy7036         102 NF  103 (254)
Q Consensus       102 ~v  103 (254)
                      .|
T Consensus        73 ~V   74 (74)
T cd05745          73 TV   74 (74)
T ss_pred             eC
Confidence            64

Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.

>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=99.73  E-value=1.7e-16  Score=98.24  Aligned_cols=91  Identities=21%  Similarity=0.350  Sum_probs=71.1

Q ss_pred             CCeeEeCC--CceeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEE
Q psy7036           8 APSFTQKP--QLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYK   85 (254)
Q Consensus         8 ~p~~~~~~--~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~   85 (254)
                      +|.|...+  ....+..|+++.|.|.+.|.|.+.+.|+++|..+.... ..+.....+     ..|.|.+++..|+|.|+
T Consensus         1 pp~i~~~~~~~~~~~~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~-~~~~~~~~~-----~~L~I~~v~~~D~G~Y~   74 (95)
T cd05730           1 PPTIRARQSEVNATANLGQSVTLACDADGFPEPTMTWTKDGEPIESGE-EKYSFNEDG-----SEMTILDVDKLDEAEYT   74 (95)
T ss_pred             CCccccCCcccceEEeCCCCEEEEEeccEeCCCEEEEEECCEECcCCC-CEEEEeCCC-----CEEEECCCChhhCEEEE
Confidence            35555443  33468899999999999999999999999999886541 122222111     26999999999999999


Q ss_pred             EEEEcCCCceEEEEEEEEe
Q psy7036          86 VKAKNKMGEVAASINLNFS  104 (254)
Q Consensus        86 C~~~~~~~~~~~~~~l~v~  104 (254)
                      |.+.|..|.....+.|.|.
T Consensus        75 C~a~N~~G~~~~~~~L~V~   93 (95)
T cd05730          75 CIAENKAGEQEAEIHLKVF   93 (95)
T ss_pred             EEEEcCCCeEEEEEEEEEE
Confidence            9999999998888888875

Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the

>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1

Probab=99.73  E-value=1.8e-16  Score=97.35  Aligned_cols=89  Identities=27%  Similarity=0.456  Sum_probs=68.4

Q ss_pred             eEeCCCceeecCCCeEEEEEEEeeCCC-CceEEEe-CCEEeee-CCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEE
Q psy7036          11 FTQKPQLRQEDEGNRLIFECQLLCNPK-PDIVWFR-GETQLSE-DTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVK   87 (254)
Q Consensus        11 ~~~~~~~~~v~~g~~v~l~C~~~~~~~-~~v~W~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~   87 (254)
                      +...|....+.+|++++|.|.+.|.|. +.++|++ ++..+.. ..++.+.  ..  ....+.|.|.+++.+|+|.|+|.
T Consensus         3 ~~~~p~~~~v~~G~~v~l~C~v~G~P~~p~i~W~~~~g~~l~~~~~r~~v~--~~--~~~~~~L~I~~v~~~D~G~YtC~   78 (96)
T cd05865           3 VDIVPSQGEISVGESKFFLCQVAGEAKDKDISWFSPNGEKLTPNQQRISVV--RN--DDYSSTLTIYNANIDDAGIYKCV   78 (96)
T ss_pred             EEEeCCccEECCCCeEEEEEEEeCCCCCCEEEEECCCCcCccccCCeEEEE--eC--CCCceEEEEeccChhhCEEEEEE
Confidence            345677778999999999999999985 7999998 7776654 2232222  11  11234899999999999999999


Q ss_pred             EEcCC-CceEEEEEEEE
Q psy7036          88 AKNKM-GEVAASINLNF  103 (254)
Q Consensus        88 ~~~~~-~~~~~~~~l~v  103 (254)
                      |.|.. |....++.|.|
T Consensus        79 A~N~~~g~~~~s~~l~v   95 (96)
T cd05865          79 VSNEDEGESEATVNVKI   95 (96)
T ss_pred             EEcCCCCcEEEEEEEEE
Confidence            99986 77888887776

Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans

>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins

Probab=99.73  E-value=1.2e-16  Score=99.19  Aligned_cols=92  Identities=27%  Similarity=0.439  Sum_probs=70.4

Q ss_pred             CCeeEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCc---ceEEEeecCCcceEEEEEEeccCCCCCeEE
Q psy7036           8 APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTR---TVMKTTPIGTNKYLVALELDDVIETDAGLY   84 (254)
Q Consensus         8 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y   84 (254)
                      +|.|. .+....+.+|+++.|.|.+.|.|.+.+.|++++..+.....   .++...   .....+.|.|.+++.+|+|.|
T Consensus         2 ~P~i~-~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~---~~~~~~~L~I~~v~~~D~G~Y   77 (96)
T cd05732           2 QPKIT-YLENQTAVELEQITLTCEAEGDPIPEITWRRATRNFSEGDKSLDGRIVVR---GHARVSSLTLKDVQLTDAGRY   77 (96)
T ss_pred             Cccce-ecCceeEecCCcEEEEEEEeEcCCCcEEEEECCcccCCCCccccceEEEe---CCccEEEEEECcCCcCcCEEe
Confidence            57775 45567889999999999999999999999999866543211   112111   122334899999999999999


Q ss_pred             EEEEEcCCCceEEEEEEEE
Q psy7036          85 KVKAKNKMGEVAASINLNF  103 (254)
Q Consensus        85 ~C~~~~~~~~~~~~~~l~v  103 (254)
                      +|.+.|..|....++.|.|
T Consensus        78 ~C~a~N~~G~~~~s~~l~v   96 (96)
T cd05732          78 DCEASNRIGGDQQSMYLEV   96 (96)
T ss_pred             EEEEEeCCCCcEEEEEEeC
Confidence            9999999999887777654

Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole

>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin

Probab=99.73  E-value=2.5e-16  Score=99.46  Aligned_cols=99  Identities=25%  Similarity=0.342  Sum_probs=74.6

Q ss_pred             CCCCCeeEeCCCceee----cCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCC-cceEEEeecCCcceEEEEEEeccC-C
Q psy7036           5 EDFAPSFTQKPQLRQE----DEGNRLIFECQLLCNPKPDIVWFRGETQLSEDT-RTVMKTTPIGTNKYLVALELDDVI-E   78 (254)
Q Consensus         5 ~~~~p~~~~~~~~~~v----~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~i~~~~-~   78 (254)
                      +.++|.|...|....+    ..|..++|.|.+.|.|.+.+.|+|+|..+.... ++...... ......+.|.|.+++ .
T Consensus         1 v~~~P~~~~~~~~~~~~~~~~~g~~v~L~C~a~G~P~p~i~W~k~g~~l~~~~~r~~~~~~~-~~~~~~s~L~I~~v~~~   79 (109)
T cd05773           1 VRFAPDLQKGPQLRKVASRGDGSSDANLVCQAQGVPRVQFRWAKNGVPLDLGNPRYEETTEH-TGTVHTSILTIINVSAA   79 (109)
T ss_pred             CccccccccCCceEEEEEecCCCCEEEEEEECcccCCCEEEEEECCEECCCCCCeEEEEeec-cCccceeEEEECcCCcc
Confidence            3578888877764333    256799999999999999999999999886432 32222111 122223579999997 5


Q ss_pred             CCCeEEEEEEEcCCCceEEEEEEEEe
Q psy7036          79 TDAGLYKVKAKNKMGEVAASINLNFS  104 (254)
Q Consensus        79 ~d~G~Y~C~~~~~~~~~~~~~~l~v~  104 (254)
                      .|.|.|+|.|.|..|.....+.|.|.
T Consensus        80 ~D~G~Y~C~A~N~~G~~~~~i~L~~~  105 (109)
T cd05773          80 LDYALFTCTAHNSLGEDSLDIQLVST  105 (109)
T ss_pred             CCCEEEEEEEEeCCccCcEEEEEEec
Confidence            99999999999999999999988886

Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p

>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM)

Probab=99.72  E-value=1.4e-16  Score=99.00  Aligned_cols=92  Identities=23%  Similarity=0.376  Sum_probs=68.7

Q ss_pred             CCeeEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeC--CEEeeeCC---cceEEEeecCCcceEEEEEEeccCCCCCe
Q psy7036           8 APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRG--ETQLSEDT---RTVMKTTPIGTNKYLVALELDDVIETDAG   82 (254)
Q Consensus         8 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~--~~~~~~~~---~~~~~~~~~~~~~~~~~l~i~~~~~~d~G   82 (254)
                      +|.|.. +.+..+.+|++++|.|.+.|.|.|.+.|+++  +..+....   ..++.....   .....|.|.+++.+|+|
T Consensus         2 ~p~i~~-~~~~~~~~G~~v~l~C~~~G~P~p~i~W~k~~~g~~~~~~~~~~~~r~~v~~~---~~~~~L~I~~v~~~D~G   77 (98)
T cd05870           2 QPHIIQ-LKNETTVENGAATLSCKAEGEPIPEITWKRASDGHTFSEGDKSPDGRIEVKGQ---HGESSLHIKDVKLSDSG   77 (98)
T ss_pred             CCEEEe-eccEEEcCCCcEEEEEecccCCCCeEEEEECCCCceeccCCcCcCceEEEeec---CCeeEEEEeeCCcCCCE
Confidence            577765 6678899999999999999999999999994  44443211   112222111   12237999999999999


Q ss_pred             EEEEEEEcCCCceEEEEEEEE
Q psy7036          83 LYKVKAKNKMGEVAASINLNF  103 (254)
Q Consensus        83 ~Y~C~~~~~~~~~~~~~~l~v  103 (254)
                      .|+|.+.|..|....++.|.|
T Consensus        78 ~Y~C~A~N~~G~~~~~~~l~~   98 (98)
T cd05870          78 RYDCEAASRIGGHQKSMYLDI   98 (98)
T ss_pred             EEEEEEeccCCcceeEEEEeC
Confidence            999999999999887777754

Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1

Probab=99.72  E-value=6.6e-17  Score=94.18  Aligned_cols=73  Identities=30%  Similarity=0.555  Sum_probs=61.6

Q ss_pred             CCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcCCCceEEEEEEE
Q psy7036          23 GNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLN  102 (254)
Q Consensus        23 g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~  102 (254)
                      |+++.|.|.+.|.|.+.++|+|++..+....++.+  ..++      +|.|.+++.+|+|.|+|.+.|..|.....+.|.
T Consensus         1 G~~~~l~C~~~g~P~p~v~W~k~~~~l~~~~r~~~--~~~g------~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~   72 (73)
T cd05852           1 GGRVIIECKPKAAPKPKFSWSKGTELLVNNSRISI--WDDG------SLEILNITKLDEGSYTCFAENNRGKANSTGVLS   72 (73)
T ss_pred             CCeEEEEEecceeCCCEEEEEeCCEecccCCCEEE--cCCC------EEEECcCChhHCEEEEEEEECCCCceeEEEEEE
Confidence            78899999999999999999999988765554433  2222      799999999999999999999999988888776


Q ss_pred             E
Q psy7036         103 F  103 (254)
Q Consensus       103 v  103 (254)
                      |
T Consensus        73 ~   73 (73)
T cd05852          73 V   73 (73)
T ss_pred             C
Confidence            4

Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins

Probab=99.72  E-value=3.2e-16  Score=97.02  Aligned_cols=88  Identities=17%  Similarity=0.326  Sum_probs=70.3

Q ss_pred             CeeeecCCCeEEEEEEEee-CCCCeEEEEECCEecccCCcceEEEcC-CCCceeeEEEEccCCCCCceeEEEEEEcCCCc
Q psy7036         120 SIRQEDDGKRLLFECRIQA-DPAPTVIWSHSGVQVKEDKRHKFSIDK-DGHSYFASLEIIDVTIEDAGKYKVTAKNELGE  197 (254)
Q Consensus       120 ~~~~~~~g~~~~l~C~~~~-~~~~~~~W~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~  197 (254)
                      ....+..|+.+.|.|.+.+ .|+|.+.|+|+|..+............ ....+.+.|.|.+++.+|+|.|+|.|.|..|.
T Consensus        11 ~~~~v~~G~~v~L~c~v~g~~P~p~v~W~Kdg~~i~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~G~   90 (101)
T cd04975          11 TTIFVNLGENLNLVVEVEAYPPPPHINWTYDNRTLTNKLTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSDAS   90 (101)
T ss_pred             ceEEEECCCCEEEEEEEEecCCCCccEEEeCCeeCCCCcceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCCcc
Confidence            4567888999999999999 889999999999998754332222211 12234468999999999999999999999999


Q ss_pred             ceEEEEEEEe
Q psy7036         198 SNATISLNFD  207 (254)
Q Consensus       198 ~~~~~~~~v~  207 (254)
                      .+.++.|.|.
T Consensus        91 ~~~t~~L~V~  100 (101)
T cd04975          91 KSLTFELYVN  100 (101)
T ss_pred             EEEEEEEEEE
Confidence            8888888775

Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes

>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin

Probab=99.72  E-value=1.3e-16  Score=93.25  Aligned_cols=74  Identities=28%  Similarity=0.478  Sum_probs=59.5

Q ss_pred             EEEEEEEeeCCCCceEEEeCCEEeeeC-CcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEE
Q psy7036          26 LIFECQLLCNPKPDIVWFRGETQLSED-TRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLNF  103 (254)
Q Consensus        26 v~l~C~~~~~~~~~v~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v  103 (254)
                      |.|.|.+.|.|.|.+.|+|++..+... .++.+...  +  .+..+|.|.+++.+|+|.|+|.+.|..|.....+.|.|
T Consensus         1 v~l~C~v~G~P~P~i~W~k~~~~i~~~~~r~~~~~~--~--~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~a~L~V   75 (75)
T cd05892           1 VKLECQISAIPPPKIFWKRNNEMVQYNTDRISLYQD--N--SGRVTLLIKNVNKKDAGWYTVSAVNEAGVATCHARLDV   75 (75)
T ss_pred             CEEEEEEEecCCCeEEEEECCEECcCCCCeEEEEEc--C--CCcEEEEECCCChhhCEEEEEEEEcCcCeEEEEEEEeC
Confidence            579999999999999999999988743 33333221  1  12237999999999999999999999999988888765

Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.

>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.72  E-value=2e-16  Score=93.45  Aligned_cols=74  Identities=24%  Similarity=0.447  Sum_probs=60.9

Q ss_pred             CCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcc-eEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcCCCceEEEEEE
Q psy7036          23 GNRLIFECQLLCNPKPDIVWFRGETQLSEDTRT-VMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINL  101 (254)
Q Consensus        23 g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l  101 (254)
                      |+++.|.|.+.|.|.|.++|+|+|..+...... +... ..      ..|.|.+++..|+|.|+|.+.|..|.....+.|
T Consensus         1 G~~v~l~C~~~G~P~p~i~W~k~g~~i~~~~~~~~~~~-~~------~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l   73 (76)
T cd05867           1 GETARLDCQVEGIPTPNITWSINGAPIEGTDPDPRRHV-SS------GALILTDVQPSDTAVYQCEARNRHGNLLANAHV   73 (76)
T ss_pred             CCeEEEEEEeeEeCCCeEEEEECCEECCCCCCCceEEe-eC------CEEEECCCChhhCEEEEEEEECCCCeEEEEEEE
Confidence            789999999999999999999999987653221 2211 11      179999999999999999999999998888888


Q ss_pred             EE
Q psy7036         102 NF  103 (254)
Q Consensus       102 ~v  103 (254)
                      .|
T Consensus        74 ~V   75 (76)
T cd05867          74 HV   75 (76)
T ss_pred             EE
Confidence            76

Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule)

Probab=99.72  E-value=1.8e-16  Score=93.43  Aligned_cols=75  Identities=23%  Similarity=0.407  Sum_probs=61.1

Q ss_pred             CCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcCCCceEEEEEEE
Q psy7036          23 GNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLN  102 (254)
Q Consensus        23 g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~  102 (254)
                      |+++.|.|.+.|.|.|.++|+|+|..+........... .+.     .|.|.+++..|+|.|+|.+.|..|...+.+.|.
T Consensus         1 g~~~~l~C~a~G~P~P~i~W~k~g~~i~~~~~~~~~~~-~~~-----~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~   74 (76)
T cd05868           1 GEDGTLICRANGNPKPSISWLTNGVPIEIAPTDPSRKV-DGD-----TIIFSKVQERSSAVYQCNASNEYGYLLANAFVN   74 (76)
T ss_pred             CCCEEEEEEeeEeCCCeEEEEECCEEccccCCCceEEe-cCC-----EEEECCCCHhhCEEEEEEEEcCCCEEEEEEEEE
Confidence            78899999999999999999999998864322211111 111     689999999999999999999999999988888


Q ss_pred             E
Q psy7036         103 F  103 (254)
Q Consensus       103 v  103 (254)
                      |
T Consensus        75 v   75 (76)
T cd05868          75 V   75 (76)
T ss_pred             e
Confidence            7

Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1

Probab=99.72  E-value=2.5e-16  Score=95.61  Aligned_cols=86  Identities=20%  Similarity=0.339  Sum_probs=69.8

Q ss_pred             CccccCCCeeeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEE
Q psy7036         113 PTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAK  192 (254)
Q Consensus       113 ~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~  192 (254)
                      |.+...+....+.+|+.+.|.|.+.|.|.|.+.|+|++..+....  ++... ++     .|.|.++..+|.|.|+|.|.
T Consensus         2 p~i~~~~~~~~~~~G~~v~l~C~~~G~P~P~v~W~k~~~~~~~~~--~~~~~-~~-----~L~I~~v~~~D~G~Y~C~A~   73 (88)
T cd05851           2 ADINVKFKDTYALKGQNVTLECFALGNPVPVIRWRKILEPMPATA--EISMS-GA-----VLKIFNIQPEDEGTYECEAE   73 (88)
T ss_pred             CceEEccccEEEeCCCcEEEEEEecccCCCEEEEEECCcCCCCCC--EEecC-CC-----EEEECcCChhhCEEEEEEEE
Confidence            455555667778899999999999999999999999987765432  22221 22     79999999999999999999


Q ss_pred             cCCCcceEEEEEEE
Q psy7036         193 NELGESNATISLNF  206 (254)
Q Consensus       193 ~~~~~~~~~~~~~v  206 (254)
                      |..|.......|.|
T Consensus        74 N~~G~~~~~~~l~V   87 (88)
T cd05851          74 NIKGKDKHQARVYV   87 (88)
T ss_pred             cCCCceEEEEEEEE
Confidence            99999888887776

Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha

Probab=99.71  E-value=3e-16  Score=97.34  Aligned_cols=88  Identities=22%  Similarity=0.370  Sum_probs=69.6

Q ss_pred             ceeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEee-cCCcceEEEEEEeccCCCCCeEEEEEEEcCCCce
Q psy7036          17 LRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTP-IGTNKYLVALELDDVIETDAGLYKVKAKNKMGEV   95 (254)
Q Consensus        17 ~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~   95 (254)
                      ...+..|+.+.|.|.+.|.|.|.+.|+|+|.++............ .....+.+.|.|.+++.+|+|.|+|.|.|..|..
T Consensus        12 ~~~~~~~~~~~l~~~v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g~~   91 (101)
T cd05859          12 LEFANLHEVKEFVVEVEAYPPPQIRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDAVK   91 (101)
T ss_pred             eEEEecCCcEEEEEEEEEeCCCceEEEECCEECcCCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCceE
Confidence            557889999999999999999999999999998765433222110 0112334589999999999999999999999998


Q ss_pred             EEEEEEEEe
Q psy7036          96 AASINLNFS  104 (254)
Q Consensus        96 ~~~~~l~v~  104 (254)
                      ..++.|.|.
T Consensus        92 ~~t~~l~V~  100 (101)
T cd05859          92 SYTFALQIQ  100 (101)
T ss_pred             EEEEEEEEE
Confidence            888888774

IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.

>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2)

Probab=99.71  E-value=2.8e-16  Score=96.24  Aligned_cols=86  Identities=24%  Similarity=0.574  Sum_probs=69.3

Q ss_pred             CCCceeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcCCC
Q psy7036          14 KPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMG   93 (254)
Q Consensus        14 ~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~   93 (254)
                      .|..+.+.+|+++.|.|.+.+.|.+.+.||+++..+....++...... + .  ...|.|.+++.+|+|.|+|.+.|..|
T Consensus         7 ~p~~v~v~eG~~v~L~C~v~g~P~p~i~W~k~~~~~~~~~~~~~~~~~-~-~--~~~L~I~~~~~~D~G~Y~C~a~N~~G   82 (92)
T cd05891           7 LPDVVTIMEGKTLNLTCTVFGNPDPEVIWFKNDQDIELSEHYSVKLEQ-G-K--YASLTIKGVTSEDSGKYSINVKNKYG   82 (92)
T ss_pred             CCCcEEEcCCCEEEEEEEEEEeCCCeEEEEECCEECCCCCCEEEEEcC-C-C--EEEEEECCCChhhCEEEEEEEEeCCC
Confidence            345678899999999999999999999999999988765554443321 1 1  23799999999999999999999999


Q ss_pred             ceEEEEEEEE
Q psy7036          94 EVAASINLNF  103 (254)
Q Consensus        94 ~~~~~~~l~v  103 (254)
                      .....+.|.|
T Consensus        83 ~~~~~~~v~~   92 (92)
T cd05891          83 GETVDVTVSV   92 (92)
T ss_pred             ceeeEEEEEC
Confidence            9888777654

Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.

>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein

Probab=99.71  E-value=4.5e-16  Score=95.53  Aligned_cols=84  Identities=26%  Similarity=0.495  Sum_probs=68.7

Q ss_pred             CeeeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcce
Q psy7036         120 SIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESN  199 (254)
Q Consensus       120 ~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~  199 (254)
                      ..+.+.+|+.+.|.|.+.|.|.|.+.|+|++..+.......+.......   +.|.|.++..+|+|.|+|.|.|..|...
T Consensus         9 ~~v~v~~G~~v~L~C~v~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~---~~L~I~~v~~~D~G~Y~C~a~N~~G~~~   85 (92)
T cd05737           9 DVVTIMEGKTLNLTCTVFGDPDPEVSWLKNDQALALSDHYNVKVEQGKY---ASLTIKGVSSEDSGKYGIVVKNKYGGET   85 (92)
T ss_pred             ceEEEeCCCcEEEEEEEEecCCCeEEEEECCEECccCCCEEEEEcCCCE---EEEEEccCChhhCEEEEEEEEECCCcce
Confidence            3567888999999999999999999999999988765554443332211   3799999999999999999999999988


Q ss_pred             EEEEEEE
Q psy7036         200 ATISLNF  206 (254)
Q Consensus       200 ~~~~~~v  206 (254)
                      ..+.|.|
T Consensus        86 ~~~~v~v   92 (92)
T cd05737          86 VDVTVSV   92 (92)
T ss_pred             EEEEEeC
Confidence            8877654

Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.

>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

Probab=99.70  E-value=5.8e-16  Score=97.11  Aligned_cols=95  Identities=23%  Similarity=0.461  Sum_probs=68.5

Q ss_pred             CCeeEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCC---cceEEEeecCCcceEEEEEEeccCCCCCeEE
Q psy7036           8 APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDT---RTVMKTTPIGTNKYLVALELDDVIETDAGLY   84 (254)
Q Consensus         8 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y   84 (254)
                      +|.|...|....+.+|+++.|.|.+.|.|.+.+.|+|+|..+....   .........+ ......+.+.+++..|+|.|
T Consensus         1 ~P~i~~~p~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~D~G~Y   79 (100)
T cd07693           1 PPRIVEHPSDLIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSG-SLFFLRVVHGRKGRSDEGVY   79 (100)
T ss_pred             CCeEEecCceeEEcCCCeEEEEeeCCcCCCCEEEEEECCEECccccCCCCcceEEecCC-cEEEEEeeccCCCcCcCEEE
Confidence            5899999999999999999999999999999999999999876521   1111111111 11111122233478999999


Q ss_pred             EEEEEcCCCc-eEEEEEEEE
Q psy7036          85 KVKAKNKMGE-VAASINLNF  103 (254)
Q Consensus        85 ~C~~~~~~~~-~~~~~~l~v  103 (254)
                      +|.+.|..|. ....+.|.|
T Consensus        80 ~C~a~N~~G~~~s~~~~l~v   99 (100)
T cd07693          80 VCVAHNSLGEAVSRNASLEV   99 (100)
T ss_pred             EEEEEccccceecceEEEEe
Confidence            9999999998 556666665

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res

>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=99.70  E-value=1.1e-15  Score=92.78  Aligned_cols=82  Identities=22%  Similarity=0.403  Sum_probs=66.9

Q ss_pred             CCeEEEEEEEeeCCCCeEEEEECCEecccCC-cceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcceEEEEEE
Q psy7036         127 GKRLLFECRIQADPAPTVIWSHSGVQVKEDK-RHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLN  205 (254)
Q Consensus       127 g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~  205 (254)
                      |+.+.|.|.+.|.|++.+.|++++..+.... +..+.....+....+.|.|.++..+|.|.|+|.|.|..|.....+.|.
T Consensus         1 g~~~~l~C~~~g~p~~~i~W~k~~~~i~~~~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~L~   80 (88)
T cd05735           1 GQKKEMSCTAHGEKPIIVRWEKEDRIINPEMSRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGEDRGIIQLT   80 (88)
T ss_pred             CCeEEEEEEEECCCCCEEEEeeCCEECCCCCCcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCcceEEEEEE
Confidence            6889999999999999999999998875443 222222233445556899999999999999999999999999999988


Q ss_pred             Eec
Q psy7036         206 FDS  208 (254)
Q Consensus       206 v~~  208 (254)
                      |..
T Consensus        81 V~~   83 (88)
T cd05735          81 VQE   83 (88)
T ss_pred             EeC
Confidence            875

Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB

Probab=99.70  E-value=3.8e-16  Score=91.51  Aligned_cols=76  Identities=28%  Similarity=0.482  Sum_probs=59.9

Q ss_pred             EEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcCCCceEEEEEEE
Q psy7036          27 IFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLN  102 (254)
Q Consensus        27 ~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~  102 (254)
                      .|.|.+.|.|.|.++|||||..+..+.+............+.+.|.|.++...|+|.|+|.|.|..|....++.+.
T Consensus         2 ~i~~~v~G~P~Pti~W~kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~~~~~   77 (79)
T cd05855           2 CIPFTVKGNPKPTLQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDEKNVSAH   77 (79)
T ss_pred             eEEEEEeEeCCCceEEEECCEECCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCcccceEEEee
Confidence            3679999999999999999999976655433322222333455899999999999999999999999887766554

TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.

>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3)

Probab=99.70  E-value=2e-16  Score=89.86  Aligned_cols=66  Identities=21%  Similarity=0.440  Sum_probs=55.4

Q ss_pred             EEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEEe
Q psy7036          26 LIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFS  104 (254)
Q Consensus        26 v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~  104 (254)
                      ++|.|.+.|.|.|.++|||||..+.....             ...|.|.++..+|+|.|+|.+.|..|....+..+.|.
T Consensus         1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~~~-------------~~~L~i~~v~~~D~G~YtC~a~N~~g~~~~~~~~~l~   66 (67)
T cd05863           1 VKLPVKVAAYPPPEFQWYKDGKLISGKHS-------------QHSLQIKDVTEASAGTYTLVLWNSAAGLEKRISLELI   66 (67)
T ss_pred             CEEEEEEEEeCCCEEEEEECCEECcccCC-------------cCEEEECCCCHHHCEEEEEEEEECCccEEEEEEEEEE
Confidence            47999999999999999999998863211             1279999999999999999999999987777776653

Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.

>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin

Probab=99.70  E-value=2.9e-16  Score=91.92  Aligned_cols=75  Identities=27%  Similarity=0.474  Sum_probs=59.0

Q ss_pred             EEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEE
Q psy7036          26 LIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLNF  103 (254)
Q Consensus        26 v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v  103 (254)
                      |+|.|.+.|.|.|.+.|+|++..+..... ++.....+  .....|.|.+++.+|+|.|+|.+.|..|....++.|.|
T Consensus         1 v~l~C~v~G~P~P~v~W~k~~~~l~~~~~-~~~~~~~~--~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V   75 (75)
T cd05893           1 VRLECRVSGVPHPQIFWKKENESLTHNTD-RVSMHQDN--CGYICLLIQGATKEDAGWYTVSAKNEAGIVSCTARLDV   75 (75)
T ss_pred             CEEEEEEeEecCCEEEEEECCEECCCCCC-eEEEEEcC--CCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEEEEEeC
Confidence            57999999999999999999998864321 22222221  12336999999999999999999999999988888765

Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.

>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2

Probab=99.69  E-value=8.5e-16  Score=93.41  Aligned_cols=87  Identities=21%  Similarity=0.418  Sum_probs=66.5

Q ss_pred             eEeCCCceeecCCCeEEEEEEEeeCCCCceEEEe-CCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEE
Q psy7036          11 FTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFR-GETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAK   89 (254)
Q Consensus        11 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~   89 (254)
                      +...|....+.+|+++.|.|.+.|.|. .+.|++ ++..+....+..+.  ..+   ..+.|.|.+++.+|+|.|+|.|.
T Consensus         3 ~~~~~~~~~v~~G~~v~l~C~~~G~P~-~v~W~k~~g~~~~~~~r~~~~--~~g---~~~~L~I~~v~~~D~G~Y~C~A~   76 (92)
T cd05866           3 VSISLSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIVSSQRVVVQ--KEG---VRSRLTIYNANIEDAGIYRCQAT   76 (92)
T ss_pred             EEEEecceEEcCCCeEEEEEEEEEeCC-eEEEEeCCCeEecCCCCEEEE--eCC---CeeEEEEecCChHHCEEEEEEEE
Confidence            456777888999999999999999888 899998 46666555444332  222   12379999999999999999999


Q ss_pred             cCCCce-EEEEEEEE
Q psy7036          90 NKMGEV-AASINLNF  103 (254)
Q Consensus        90 ~~~~~~-~~~~~l~v  103 (254)
                      |..|.. ..++.|.+
T Consensus        77 N~~G~~~~~~i~l~~   91 (92)
T cd05866          77 DAKGQTQEATVVLEI   91 (92)
T ss_pred             cCCCcEEEEEEEEEE
Confidence            999874 44555543

Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=99.69  E-value=2.7e-16  Score=93.47  Aligned_cols=79  Identities=24%  Similarity=0.463  Sum_probs=63.6

Q ss_pred             CCceeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcCCCc
Q psy7036          15 PQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGE   94 (254)
Q Consensus        15 ~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~   94 (254)
                      |+...+.+|+.+.|.|.+.+. .+.+.|+|+|..+....+..+.    +.     .|.|.+++..|+|.|+|.+.|..|.
T Consensus         1 ~~~~~~~~G~~v~l~C~~~~~-~~~v~W~k~g~~l~~~~~~~~~----~~-----~L~I~~~~~~DsG~Y~C~a~n~~g~   70 (79)
T cd04973           1 VESYSAHPGDLLQLRCRLRDD-VQSINWTKDGVQLGENNRTRIT----GE-----EVQIKDAVPRDSGLYACVTSSPSGS   70 (79)
T ss_pred             CCcEEecCCCCEEEEEEecCC-CceEEEeeCCcCCCCCceEEEe----CC-----EEEECCCChhhCEEEEEEEeCCCCc
Confidence            456778999999999999875 5689999999988765544332    11     6999999999999999999998888


Q ss_pred             eEEEEEEEE
Q psy7036          95 VAASINLNF  103 (254)
Q Consensus        95 ~~~~~~l~v  103 (254)
                      ....+.|.|
T Consensus        71 ~~~~~~v~V   79 (79)
T cd04973          71 DTTYFSVNV   79 (79)
T ss_pred             ccEEEEEeC
Confidence            766666553

Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.

>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C)

Probab=99.69  E-value=1.8e-15  Score=91.26  Aligned_cols=82  Identities=30%  Similarity=0.492  Sum_probs=66.2

Q ss_pred             eeeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCC-cceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcce
Q psy7036         121 IRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDK-RHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESN  199 (254)
Q Consensus       121 ~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~  199 (254)
                      .+.+..|+.+.|.|.+.|.|.|.+.|++++..+.... +..+....+    .+.|.|.++..+|+|.|+|.|.|..|...
T Consensus         4 ~~~v~~G~~v~l~c~~~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~----~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~   79 (86)
T cd05894           4 TIVVVAGNKLRLDVPISGEPAPTVTWSRGDKAFTETEGRVRVESYKD----LSSFVIEGAEREDEGVYTITVTNPVGEDH   79 (86)
T ss_pred             EEEEEcCCEEEEEeeEeecCCCeEEEEECCEECccCCCeEEEEEcCC----eEEEEECCCccCcCEEEEEEEEeCCCcEE
Confidence            4567789999999999999999999999999886543 222222211    24799999999999999999999999988


Q ss_pred             EEEEEEE
Q psy7036         200 ATISLNF  206 (254)
Q Consensus       200 ~~~~~~v  206 (254)
                      .++.|.|
T Consensus        80 ~~~~l~V   86 (86)
T cd05894          80 ASLFVKV   86 (86)
T ss_pred             EEEEEEC
Confidence            8877754

Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.

>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins

Probab=99.69  E-value=1.4e-15  Score=93.41  Aligned_cols=90  Identities=31%  Similarity=0.600  Sum_probs=72.8

Q ss_pred             CCCccccCCCeeeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEE
Q psy7036         111 LAPTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVT  190 (254)
Q Consensus       111 ~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~  190 (254)
                      .+|.+...+....+..|+.+.|.|.+.+.|.|.+.|++++..+....+..+.....    .+.|.|.++..+|.|.|.|.
T Consensus         2 ~~~~~~~~p~~~~~~~G~~~~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~----~~~L~i~~~~~~D~G~Y~C~   77 (92)
T cd05747           2 LPATILTKPRSLTVSEGESARFSCDVDGEPAPTVTWMREGQIIVSSQRHQITSTEY----KSTFEISKVQMSDEGNYTVV   77 (92)
T ss_pred             CCCcccccCccEEEeCCCcEEEEEEEeecCCCEEEEEECCEECCCCCcEEEEEcCC----eeEEEECCCCcccCEeEEEE
Confidence            35666777778889999999999999999999999999998876544433332211    24899999999999999999


Q ss_pred             EEcCCCcceEEEEE
Q psy7036         191 AKNELGESNATISL  204 (254)
Q Consensus       191 ~~~~~~~~~~~~~~  204 (254)
                      |.|..|....++.|
T Consensus        78 a~N~~G~~~~~~~l   91 (92)
T cd05747          78 VENSEGKQEAQFTL   91 (92)
T ss_pred             EEcCCCCEeEEEEe
Confidence            99999988777665

Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.

>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5

Probab=99.68  E-value=1.6e-15  Score=93.18  Aligned_cols=81  Identities=25%  Similarity=0.479  Sum_probs=64.1

Q ss_pred             CeeEeCCCceeec---CCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccC-CCCCeEE
Q psy7036           9 PSFTQKPQLRQED---EGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVI-ETDAGLY   84 (254)
Q Consensus         9 p~~~~~~~~~~v~---~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~G~Y   84 (254)
                      |.|+..|.+..+.   +|++++|.|.+.|.|.|.++|+|+|..+......++... ++      .|.|.++. ..|+|.|
T Consensus         2 P~f~~~p~~~~~~~~~~g~~v~l~C~~~G~P~P~i~W~k~g~~l~~~~~~~~~~~-~g------~L~i~~~~~~~D~G~Y   74 (94)
T cd05848           2 PVFVQEPDDAIFPTDSDEKKVILNCEARGNPVPTYRWLRNGTEIDTESDYRYSLI-DG------NLIISNPSEVKDSGRY   74 (94)
T ss_pred             CeeEECCCcEEccCCCCCCEEEEEEEeeecCCCEEEEEECCeECccCCCceEEee-CC------eEEEccCCccCcCEEE
Confidence            7888888887654   478999999999999999999999998865433333221 11      68898875 6999999


Q ss_pred             EEEEEcCCCceE
Q psy7036          85 KVKAKNKMGEVA   96 (254)
Q Consensus        85 ~C~~~~~~~~~~   96 (254)
                      +|.|.|..|...
T Consensus        75 ~C~A~N~~G~~~   86 (94)
T cd05848          75 QCLATNSIGSIL   86 (94)
T ss_pred             EEEEEcCCCeEE
Confidence            999999998754

Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.

>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin

Probab=99.68  E-value=8.8e-16  Score=89.72  Aligned_cols=74  Identities=32%  Similarity=0.562  Sum_probs=58.7

Q ss_pred             EEEEEEEeeCCCCeEEEEECCEecccC-CcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcceEEEEEEE
Q psy7036         130 LLFECRIQADPAPTVIWSHSGVQVKED-KRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNF  206 (254)
Q Consensus       130 ~~l~C~~~~~~~~~~~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~v  206 (254)
                      +.|.|.+.|.|.|.+.|+|++..+... .+..+.....+.   .+|.|.++..+|+|.|+|.|.|..|....+..|.|
T Consensus         1 v~l~C~v~G~P~P~i~W~k~~~~i~~~~~r~~~~~~~~g~---~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~a~L~V   75 (75)
T cd05892           1 VKLECQISAIPPPKIFWKRNNEMVQYNTDRISLYQDNSGR---VTLLIKNVNKKDAGWYTVSAVNEAGVATCHARLDV   75 (75)
T ss_pred             CEEEEEEEecCCCeEEEEECCEECcCCCCeEEEEEcCCCc---EEEEECCCChhhCEEEEEEEEcCcCeEEEEEEEeC
Confidence            478999999999999999999988643 222222222222   37999999999999999999999999988877754

Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.

>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins

Probab=99.68  E-value=7.8e-16  Score=90.56  Aligned_cols=74  Identities=26%  Similarity=0.455  Sum_probs=60.3

Q ss_pred             eEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEE
Q psy7036          25 RLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLNF  103 (254)
Q Consensus        25 ~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v  103 (254)
                      .+.|.|.+.|.|.|.+.|+|+|..+....+..+....     ..+.|.|.++...|+|.|+|.+.|..|.....+.|.|
T Consensus         1 ~~~l~c~~~G~P~p~v~W~k~g~~l~~~~~~~~~~~~-----~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V   74 (74)
T cd05748           1 SVRLEVPISGRPTPTVTWSKDGKPLKLSGRVQIETTA-----SSTSLVIKNAERSDSGKYTLTLKNPAGEKSATINVKV   74 (74)
T ss_pred             CEEEEeeEeeeCCCeEEEEECCEEcCCCCeEEEEECC-----CeEEEEECCCCcCcCEEEEEEEECCCccEEEEEEEEC
Confidence            3789999999999999999999998655544433221     2347999999999999999999999999888877764

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-

>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2

Probab=99.68  E-value=2.6e-15  Score=92.31  Aligned_cols=82  Identities=23%  Similarity=0.419  Sum_probs=64.3

Q ss_pred             CeeEeCCCceeecCC---CeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccC-CCCCeEE
Q psy7036           9 PSFTQKPQLRQEDEG---NRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVI-ETDAGLY   84 (254)
Q Consensus         9 p~~~~~~~~~~v~~g---~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~G~Y   84 (254)
                      |.|...|....+.+|   ++++|.|.+.|.|.+.++|+++|..+......++... .+      .|.|.++. ..|+|.|
T Consensus         2 P~f~~~P~~~~~~~~~~g~~v~l~C~a~g~P~p~i~W~~~g~~l~~~~~~~~~~~-~g------~L~I~~~~~~~D~G~Y   74 (94)
T cd05850           2 PVFEEQPSSLLFPEGSPEEKVTLGCRARASPPATYRWKMNGTEIKFAPESRYTLV-AG------NLVINNPQKARDAGSY   74 (94)
T ss_pred             CeeEECCCCEEecCCCCCCeEEEEeEceeCCCCEEEEEECCEECccCCCceEEEE-CC------eEEEccCCccCcCEEE
Confidence            788888988877665   5899999999999999999999998864433333221 11      68888765 6999999


Q ss_pred             EEEEEcCCCceEE
Q psy7036          85 KVKAKNKMGEVAA   97 (254)
Q Consensus        85 ~C~~~~~~~~~~~   97 (254)
                      +|.|.|..|...+
T Consensus        75 ~C~A~N~~G~~~s   87 (94)
T cd05850          75 QCLAINRCGTVVS   87 (94)
T ss_pred             EEEEEcCcCcEEE
Confidence            9999999997543

Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor

Probab=99.68  E-value=1.3e-15  Score=92.32  Aligned_cols=81  Identities=21%  Similarity=0.453  Sum_probs=64.8

Q ss_pred             eeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcce-EEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcCCCceE
Q psy7036          18 RQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTV-MKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVA   96 (254)
Q Consensus        18 ~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~   96 (254)
                      ..+.+|+++.|.|.+.|.|.+.++|+|+|..+....+.. .... .    ....|.|.++..+|+|.|+|.+.|..|...
T Consensus         4 ~~v~~G~~~~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~-~----~~~~l~i~~~~~~D~G~Y~C~a~N~~G~~~   78 (85)
T cd05857           4 HAVPAANTVKFRCPAAGNPTPTMRWLKNGKEFKQEHRIGGYKVR-N----QHWSLIMESVVPSDKGNYTCVVENEYGSIN   78 (85)
T ss_pred             EEcCCCCEEEEEEEcCCCCCCEEEEEECCEECCCCCceeeeEEe-C----CceEEEEccCCcccCEEEEEEEEeCCCEEE
Confidence            457899999999999999999999999999886543321 1111 1    123699999999999999999999999988


Q ss_pred             EEEEEEE
Q psy7036          97 ASINLNF  103 (254)
Q Consensus        97 ~~~~l~v  103 (254)
                      ..+.|.|
T Consensus        79 ~~~~l~v   85 (85)
T cd05857          79 HTYHLDV   85 (85)
T ss_pred             EEEEEEC
Confidence            8887764

Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.

>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=99.68  E-value=9.6e-16  Score=89.18  Aligned_cols=71  Identities=25%  Similarity=0.515  Sum_probs=58.5

Q ss_pred             eEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEE
Q psy7036          25 RLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLNF  103 (254)
Q Consensus        25 ~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v  103 (254)
                      ++.|.|.+.|.|.|.++|+|++..+....++.+.  ..+      .|.|.+++.+|+|.|+|.|.|..|....++.|.|
T Consensus         1 ~v~l~C~~~G~P~p~v~W~k~g~~~~~~~~~~~~--~~~------~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V   71 (71)
T cd05723           1 DVIFECEVTGKPTPTVKWVKNGDMVIPSDYFKIV--KEH------NLQVLGLVKSDEGFYQCIAENDVGNVQASAQLII   71 (71)
T ss_pred             CEEEEEEEEEeCCCEEEEEECCeECCCCCCEEEE--ecC------CEEEEcCCcccCEEEEEEEEcCCCEEEEEEEEEC
Confidence            4789999999999999999999988655443332  222      4888899999999999999999999888887764

Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.68  E-value=1.9e-15  Score=89.32  Aligned_cols=74  Identities=23%  Similarity=0.520  Sum_probs=60.8

Q ss_pred             CCeEEEEEEEeeCCCCeEEEEECCEecccCCcc-eEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcceEEEEEE
Q psy7036         127 GKRLLFECRIQADPAPTVIWSHSGVQVKEDKRH-KFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLN  205 (254)
Q Consensus       127 g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~  205 (254)
                      |+.+.|.|.+.|.|.|.+.|++++..+...... +... .++     .|.|.+++.+|+|.|.|.|.|..|.......|.
T Consensus         1 G~~v~l~C~~~G~P~p~i~W~k~g~~i~~~~~~~~~~~-~~~-----~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~   74 (76)
T cd05867           1 GETARLDCQVEGIPTPNITWSINGAPIEGTDPDPRRHV-SSG-----ALILTDVQPSDTAVYQCEARNRHGNLLANAHVH   74 (76)
T ss_pred             CCeEEEEEEeeEeCCCeEEEEECCEECCCCCCCceEEe-eCC-----EEEECCCChhhCEEEEEEEECCCCeEEEEEEEE
Confidence            678999999999999999999999987654322 2222 222     799999999999999999999999988887776


Q ss_pred             E
Q psy7036         206 F  206 (254)
Q Consensus       206 v  206 (254)
                      |
T Consensus        75 V   75 (76)
T cd05867          75 V   75 (76)
T ss_pred             E
Confidence            5

Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.67  E-value=7.6e-16  Score=90.49  Aligned_cols=74  Identities=30%  Similarity=0.607  Sum_probs=61.7

Q ss_pred             CCCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcceEEEEEE
Q psy7036         126 DGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLN  205 (254)
Q Consensus       126 ~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~  205 (254)
                      +|+.+.|.|.+.|.|.|.+.|+|++..+.....  .....++     .|.|.+++.+|.|.|+|.|.|..|....++.|.
T Consensus         1 eG~~v~l~C~~~g~P~p~i~W~k~g~~~~~~~~--~~~~~~~-----~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~   73 (74)
T cd05745           1 EGQTVDFLCEAQGYPQPVIAWTKGGSQLSVDRR--HLVLSSG-----TLRISRVALHDQGQYECQAVNIVGSQRTVAQLT   73 (74)
T ss_pred             CCCeEEEEeECCEecCCEEEEEECCEECCCCCC--eEEccCC-----eEEEeeCCHHhCEEEEEEEEeCCCceeEEEEEe
Confidence            588999999999999999999999988764432  2222333     799999999999999999999999988887776


Q ss_pred             E
Q psy7036         206 F  206 (254)
Q Consensus       206 v  206 (254)
                      |
T Consensus        74 V   74 (74)
T cd05745          74 V   74 (74)
T ss_pred             C
Confidence            4

Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.

>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)

Probab=99.67  E-value=1.2e-15  Score=90.46  Aligned_cols=75  Identities=23%  Similarity=0.335  Sum_probs=61.3

Q ss_pred             CCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcCCCceEEEEEEE
Q psy7036          23 GNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLN  102 (254)
Q Consensus        23 g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~  102 (254)
                      |+++.|.|.+.|.|.|.+.|+++|..+......... ....     ..|.|.+++..|+|.|+|.+.|..|...+.+.|.
T Consensus         1 G~~~~l~C~~~g~P~p~i~W~~~g~~~~~~~~~~~~-~~~~-----~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~   74 (76)
T cd04978           1 GETGRLDCEAEGIPQPTITWRLNGVPIEELPPDPRR-RVDG-----GTLILSNVQPNDTAVYQCNASNVHGYLLANAFVH   74 (76)
T ss_pred             CCeEEEEEEceeeCCCEEEEEECCEECCCCCCcceE-EccC-----CEEEECCCChhhCEEEEEEEEccCCeEEEeEEEE
Confidence            789999999999999999999999988654432111 1111     1799999999999999999999999988888887


Q ss_pred             E
Q psy7036         103 F  103 (254)
Q Consensus       103 v  103 (254)
                      |
T Consensus        75 V   75 (76)
T cd04978          75 V   75 (76)
T ss_pred             E
Confidence            6

Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule)

Probab=99.67  E-value=1.5e-15  Score=89.51  Aligned_cols=75  Identities=21%  Similarity=0.354  Sum_probs=60.7

Q ss_pred             CCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcceEEEEEEE
Q psy7036         127 GKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNF  206 (254)
Q Consensus       127 g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~v  206 (254)
                      |+.+.|.|.+.|.|.|.+.|+|++..+............++     .|.|.+++.+|.|.|+|.|.|..|....++.|.|
T Consensus         1 g~~~~l~C~a~G~P~P~i~W~k~g~~i~~~~~~~~~~~~~~-----~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v   75 (76)
T cd05868           1 GEDGTLICRANGNPKPSISWLTNGVPIEIAPTDPSRKVDGD-----TIIFSKVQERSSAVYQCNASNEYGYLLANAFVNV   75 (76)
T ss_pred             CCCEEEEEEeeEeCCCeEEEEECCEEccccCCCceEEecCC-----EEEECCCCHhhCEEEEEEEEcCCCEEEEEEEEEe
Confidence            67899999999999999999999998854322211112222     6889999999999999999999999999888876

Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain

Probab=99.67  E-value=3.3e-15  Score=99.11  Aligned_cols=122  Identities=16%  Similarity=0.125  Sum_probs=84.9

Q ss_pred             EEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEEeccccCCCCCccccCCCeeeecCCCeEEEEEEEeeCCC--CeEEEE
Q psy7036          70 ALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQADPA--PTVIWS  147 (254)
Q Consensus        70 ~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~--~~~~W~  147 (254)
                      +|+|.+++..|+|.|.|.+.+..+.....+.|.|.      .+|.+...+.......|..+.|.|.+.++++  +.+.|+
T Consensus         2 sL~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~v~------~~P~v~~~~~~~~~~~~~~~~L~C~a~g~~P~~~~i~W~   75 (139)
T cd05771           2 SLTLPGLTVHDEGTYICSVSTPPHQAQQIIQLSVS------EPPRVRLSLEKLVSMIEEPQTLICHIAGYYPLDVQVEWT   75 (139)
T ss_pred             eEEECCCCHHHCEEEEEEEEccCcceeeEEEEEEe------cCCceEEeCCCceeecCCcEEEEEEECCCCCCCeEEEEE
Confidence            69999999999999999999888888888888886      4555544444333446888999999998644  479999


Q ss_pred             ECCEeccc----CCcc---eEEEcCCCC-ceeeEEEEccCCCCCceeEEEEEEcCCCc
Q psy7036         148 HSGVQVKE----DKRH---KFSIDKDGH-SYFASLEIIDVTIEDAGKYKVTAKNELGE  197 (254)
Q Consensus       148 ~~~~~~~~----~~~~---~~~~~~~~~-~~~~~l~i~~~~~~d~G~y~C~~~~~~~~  197 (254)
                      +++.....    ....   ......++. ...+.|.+..-..++.+.|+|.+.+....
T Consensus        76 ~~g~~~~~~~~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~~~~~g~~ytC~V~H~~l~  133 (139)
T cd05771          76 REPPGDSPPPVSLSNVSFSSHRQHQDGTYSLSSHLTLEPGTEDAGATYTCRVSHVSLE  133 (139)
T ss_pred             ECCCCCccceeccCCeEecceEeCCCCCEEEEEEEEecCCccCCCCEEEEEEEcCCCC
Confidence            99854221    0111   122233332 44567888766656667999999886543

IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.

>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=99.67  E-value=2e-15  Score=93.37  Aligned_cols=86  Identities=23%  Similarity=0.454  Sum_probs=64.9

Q ss_pred             eEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEecc-----CCCCCeEEE
Q psy7036          11 FTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDV-----IETDAGLYK   85 (254)
Q Consensus        11 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~-----~~~d~G~Y~   85 (254)
                      |...|....+.+|+++.|.|.+.+.|.+.++|+|+|..+.............+      .+.|.++     +..|.|.|+
T Consensus         2 f~~~P~~~~~~~g~~v~l~C~v~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~------~l~i~~v~~~~~~~~D~G~Y~   75 (95)
T cd05722           2 FLSEPSDIVAVRGGPVVLNCSAEGEPPPKIEWKKDGVLLNLVSDERRQQLPNG------SLLITSVVHSKHNKPDEGFYQ   75 (95)
T ss_pred             cEECCCCeEEcCCCCEEEeeecccCCCCEEEEEECCeECccccCcceEEccCC------eEEEeeeeccCCCCCcCEEEE
Confidence            56778888899999999999999999999999999998875443222222222      4556555     689999999


Q ss_pred             EEEEcC-CCce-EEEEEEE
Q psy7036          86 VKAKNK-MGEV-AASINLN  102 (254)
Q Consensus        86 C~~~~~-~~~~-~~~~~l~  102 (254)
                      |.+.|. .|.. ...+.|.
T Consensus        76 C~a~N~~~G~~~s~~~~l~   94 (95)
T cd05722          76 CVAQNDSLGSIVSRTARLT   94 (95)
T ss_pred             EEEECCccCcEEEeeeEEe
Confidence            999999 8875 3455444

Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin

Probab=99.67  E-value=8.4e-16  Score=90.10  Aligned_cols=73  Identities=33%  Similarity=0.614  Sum_probs=61.5

Q ss_pred             CCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcCCCceEEEEEEE
Q psy7036          23 GNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLN  102 (254)
Q Consensus        23 g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~  102 (254)
                      |+.+.|.|.+.|.|.+.++|+|++..+....+..+  ...+      .|.|.+++..|+|.|+|.+.|..|....++.|.
T Consensus         1 G~~v~L~C~~~g~P~p~v~W~k~~~~~~~~~~~~~--~~~~------~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~   72 (73)
T cd04969           1 GGDVIIECKPKAAPKPTISWSKGTELLTNSSRICI--WPDG------SLEILNVTKSDEGKYTCFAENFFGKANSTGSLS   72 (73)
T ss_pred             CCeEEEEEeeeEcCCCEEEEEECCEEcccCCCEEE--CCCC------eEEEccCChhHCEEEEEEEECCCCceEEEEEEE
Confidence            78899999999999999999999998866554432  2111      699999999999999999999999988888776


Q ss_pred             E
Q psy7036         103 F  103 (254)
Q Consensus       103 v  103 (254)
                      |
T Consensus        73 V   73 (73)
T cd04969          73 V   73 (73)
T ss_pred             C
Confidence            4

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha

Probab=99.67  E-value=1.7e-15  Score=93.97  Aligned_cols=87  Identities=21%  Similarity=0.331  Sum_probs=68.9

Q ss_pred             eeeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcC--CCCceeeEEEEccCCCCCceeEEEEEEcCCCcc
Q psy7036         121 IRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDK--DGHSYFASLEIIDVTIEDAGKYKVTAKNELGES  198 (254)
Q Consensus       121 ~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~  198 (254)
                      ...+..|+.+.|.|.+.|+|+|.+.|+|++..+............  ....+.+.|.|.+++.+|+|.|+|.|.|..|..
T Consensus        12 ~~~~~~~~~~~l~~~v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g~~   91 (101)
T cd05859          12 LEFANLHEVKEFVVEVEAYPPPQIRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDAVK   91 (101)
T ss_pred             eEEEecCCcEEEEEEEEEeCCCceEEEECCEECcCCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCceE
Confidence            456778999999999999999999999999998755432221111  112334689999999999999999999999999


Q ss_pred             eEEEEEEEe
Q psy7036         199 NATISLNFD  207 (254)
Q Consensus       199 ~~~~~~~v~  207 (254)
                      ..++.|.|.
T Consensus        92 ~~t~~l~V~  100 (101)
T cd05859          92 SYTFALQIQ  100 (101)
T ss_pred             EEEEEEEEE
Confidence            888888774

IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.

>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1

Probab=99.67  E-value=1.6e-15  Score=88.32  Aligned_cols=73  Identities=37%  Similarity=0.635  Sum_probs=61.3

Q ss_pred             CCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcceEEEEEEE
Q psy7036         127 GKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNF  206 (254)
Q Consensus       127 g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~v  206 (254)
                      |+.+.|.|.+.+.|.|.+.|+|++..+....  ++....++     .|.|.+++.+|.|.|+|.|.|..|....+..|.|
T Consensus         1 G~~~~l~C~~~g~P~p~v~W~k~~~~l~~~~--r~~~~~~g-----~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~~   73 (73)
T cd05852           1 GGRVIIECKPKAAPKPKFSWSKGTELLVNNS--RISIWDDG-----SLEILNITKLDEGSYTCFAENNRGKANSTGVLSV   73 (73)
T ss_pred             CCeEEEEEecceeCCCEEEEEeCCEecccCC--CEEEcCCC-----EEEECcCChhHCEEEEEEEECCCCceeEEEEEEC
Confidence            6789999999999999999999998765443  34344444     7999999999999999999999999988887754

Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin

Probab=99.67  E-value=1.7e-15  Score=88.93  Aligned_cols=74  Identities=26%  Similarity=0.451  Sum_probs=58.6

Q ss_pred             EEEEEEEeeCCCCceEEEeCCEEeeeC-CcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEE
Q psy7036          26 LIFECQLLCNPKPDIVWFRGETQLSED-TRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLNF  103 (254)
Q Consensus        26 v~l~C~~~~~~~~~v~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v  103 (254)
                      ++|.|.+.|.|.|.+.|+|++..+... .++.+.  ..+  .....|.|.+++..|+|.|+|.+.|..|.....+.|.|
T Consensus         1 v~L~C~v~G~P~P~v~W~k~~~~i~~~~~r~~~~--~~~--~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v   75 (75)
T cd05744           1 VRLECRVSAIPPPQIFWKKNNEMLTYNTDRISLY--QDN--CGRICLLIQNANKEDAGWYTVSAVNEAGVVSCNARLDV   75 (75)
T ss_pred             CEEEEEEeecCCCeEEEEECCEECCCCCCcEEEE--EcC--CCeEEEEECCCCcccCEEEEEEEEcCCCcEEEEEEEeC
Confidence            579999999999999999999988643 233222  111  12236999999999999999999999999888887764

Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).

>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=99.66  E-value=3e-15  Score=91.21  Aligned_cols=86  Identities=17%  Similarity=0.366  Sum_probs=65.4

Q ss_pred             CeeE--eCCCceeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEE
Q psy7036           9 PSFT--QKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKV   86 (254)
Q Consensus         9 p~~~--~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C   86 (254)
                      |.+.  ..+....+.+|++++|.|.+.|. .+.+.|+|++..+... +  +.....+.     .|.|.+++.+|+|.|+|
T Consensus         2 p~~~~~~~~~~~~v~~g~~v~l~C~a~g~-~p~i~W~kng~~l~~~-~--~~~~~~~~-----~L~I~~v~~~D~G~Y~C   72 (91)
T cd05740           2 PVINSNNSVGNQPPEDNQPVTLTCEAEGQ-ATYIWWVNNGSLLVPP-R--LQLSNDNR-----TLTFNNVTRSDTGHYQC   72 (91)
T ss_pred             CEeecccccCccccccCCcEEEEEEeCCC-CCEEEEEECCEECCCC-C--EEEeCCCC-----EEEECcCChhhCEEEEE
Confidence            5554  33455688999999999999999 9999999999887543 2  22221111     79999999999999999


Q ss_pred             EEEcCCCceEE-EEEEEE
Q psy7036          87 KAKNKMGEVAA-SINLNF  103 (254)
Q Consensus        87 ~~~~~~~~~~~-~~~l~v  103 (254)
                      .+.|..|...+ .+.|.|
T Consensus        73 ~a~N~~G~~~S~~~~L~V   90 (91)
T cd05740          73 EASNEVSNMTSDPYILNV   90 (91)
T ss_pred             EEEcCCCCEEeeeEEEEe
Confidence            99999997543 555554

Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the

>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=99.66  E-value=5.2e-15  Score=91.58  Aligned_cols=82  Identities=28%  Similarity=0.561  Sum_probs=67.2

Q ss_pred             eeeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcceE
Q psy7036         121 IRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNA  200 (254)
Q Consensus       121 ~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~  200 (254)
                      ...+..|+.+.|.|.+.|.|.|.+.|++++..+.... ..+....++    +.|.|.++..+|.|.|+|.|.|..|....
T Consensus        12 ~~~~~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~-~~~~~~~~~----~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~   86 (95)
T cd05730          12 NATANLGQSVTLACDADGFPEPTMTWTKDGEPIESGE-EKYSFNEDG----SEMTILDVDKLDEAEYTCIAENKAGEQEA   86 (95)
T ss_pred             ceEEeCCCCEEEEEeccEeCCCEEEEEECCEECcCCC-CEEEEeCCC----CEEEECCCChhhCEEEEEEEEcCCCeEEE
Confidence            3467789999999999999999999999998876542 223333332    26999999999999999999999999888


Q ss_pred             EEEEEEe
Q psy7036         201 TISLNFD  207 (254)
Q Consensus       201 ~~~~~v~  207 (254)
                      ++.|.|.
T Consensus        87 ~~~L~V~   93 (95)
T cd05730          87 EIHLKVF   93 (95)
T ss_pred             EEEEEEE
Confidence            8888875

Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the

>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=99.65  E-value=3.9e-15  Score=88.43  Aligned_cols=76  Identities=22%  Similarity=0.390  Sum_probs=58.9

Q ss_pred             EEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeec--CCcceEEEEEEeccCCCCCeEEEEEEEcCCCceEEEEEEE
Q psy7036          27 IFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPI--GTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLN  102 (254)
Q Consensus        27 ~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~  102 (254)
                      .|.|.+.|.|.|.++|+|+|..+.............  ......+.|.|.+++..|+|.|+|.|.|..|.....+.+.
T Consensus         2 ~i~~~v~G~P~P~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~~~   79 (81)
T cd04971           2 CIPFTVRGNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQDSKSISAH   79 (81)
T ss_pred             eEEEEeEeeCCCcEEEEECCEECcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCeeeEEEee
Confidence            368999999999999999999997665433222211  1233445799999999999999999999999987776654

TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun

>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=99.65  E-value=3.3e-15  Score=91.66  Aligned_cols=88  Identities=35%  Similarity=0.603  Sum_probs=73.4

Q ss_pred             cccCCCeeeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcC
Q psy7036         115 FLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNE  194 (254)
Q Consensus       115 ~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~  194 (254)
                      +...+....+..|+.+.|.|.+.+.|.+.+.|++++..+.......+....    ..+.|.|.++..+|.|.|+|.+.|.
T Consensus         3 ~~~~~~~~~v~~G~~~~l~c~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~----~~~~L~I~~v~~~D~G~Y~C~~~n~   78 (90)
T PF07679_consen    3 FTKKPKDVTVKEGESVTLECEVSGNPPPTVTWYKNGRPLTSSQRYQIESDG----GSSSLTIKNVTREDAGTYTCVASNS   78 (90)
T ss_dssp             EEEESSEEEEETTSEEEEEEEEEESSSSEEEEEETTEEEESSSSEEEEEET----TEEEEEESSESGGGSEEEEEEEEET
T ss_pred             EEEecCCEEEeCCCEEEEEEEEEeCCCCcccccccccceeeeeeeeeeccc----ceeEEccCCCChhhCEEEEEEEEEC
Confidence            344456778889999999999999999999999999999876665554443    2248999999999999999999999


Q ss_pred             CCcceEEEEEEE
Q psy7036         195 LGESNATISLNF  206 (254)
Q Consensus       195 ~~~~~~~~~~~v  206 (254)
                      .|....++.|.|
T Consensus        79 ~g~~~~~~~l~V   90 (90)
T PF07679_consen   79 SGEATASVNLTV   90 (90)
T ss_dssp             TEEEEEEEEEEE
T ss_pred             CCEEEEEEEEEC
Confidence            998888877764

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....

>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR)

Probab=99.65  E-value=1.2e-15  Score=88.62  Aligned_cols=70  Identities=29%  Similarity=0.533  Sum_probs=57.0

Q ss_pred             EEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEEe
Q psy7036          26 LIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFS  104 (254)
Q Consensus        26 v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~  104 (254)
                      +.|.|.+.|.|.|.+.|+|+|..+....+...    .+     ..|.|.+++..|+|.|+|.+.|..|.....+.+.|.
T Consensus         1 ~~l~c~v~g~P~p~v~W~k~g~~l~~~~~~~~----~~-----~~L~I~~v~~~D~G~YtC~a~N~~g~~~~~~~~~~~   70 (71)
T cd04976           1 VRLPVKVKAYPPPEIQWYKNGKLISEKNRTKK----SG-----HSLTIKDVTEEDAGNYTVVLTNKQAKLEKRLTFTLV   70 (71)
T ss_pred             CEEEeEEEEeCCCEEEEEECCEECCCCCEEEc----CC-----CEEEECcCCHHHCEEEEEEEEcCCccEEEEEEEEEE
Confidence            47899999999999999999998876532211    11     279999999999999999999999987777777653

Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa

>cd04968 Ig3_Contactin_like Third Ig domain of contactin

Probab=99.65  E-value=5.3e-15  Score=90.11  Aligned_cols=83  Identities=20%  Similarity=0.367  Sum_probs=66.1

Q ss_pred             ccCCCeeeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCC
Q psy7036         116 LKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNEL  195 (254)
Q Consensus       116 ~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~  195 (254)
                      ...+....+.+|+.+.|.|.+.|.|.|.+.|++++..+.....  .. ..++     .|.|.+++.+|+|.|.|.+.|..
T Consensus         5 ~~~p~~~~~~~g~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~--~~-~~~~-----~L~i~~v~~~D~G~Y~C~a~N~~   76 (88)
T cd04968           5 VVFPKDTYALKGQNVTLECFALGNPVPQIKWRKVDGSMPSSAE--IS-MSGA-----VLKIPNIQFEDEGTYECEAENIK   76 (88)
T ss_pred             EECCCceEEeCCCcEEEEEEeeEeCCCEEEEEECCCcCCCccE--EE-EeCC-----EEEECCCCcccCEEEEEEEEECC
Confidence            3344556677899999999999999999999998876543322  11 1222     79999999999999999999999


Q ss_pred             CcceEEEEEEE
Q psy7036         196 GESNATISLNF  206 (254)
Q Consensus       196 ~~~~~~~~~~v  206 (254)
                      |....+..|.|
T Consensus        77 G~~~~~~~l~V   87 (88)
T cd04968          77 GKDTHQGRIYV   87 (88)
T ss_pred             CcEEEEEEEEE
Confidence            99888877765

Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin

Probab=99.65  E-value=3.7e-15  Score=87.20  Aligned_cols=75  Identities=32%  Similarity=0.565  Sum_probs=58.6

Q ss_pred             EEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcceEEEEEEE
Q psy7036         130 LLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNF  206 (254)
Q Consensus       130 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~v  206 (254)
                      +.|.|.+.|.|.|.+.|+|++..+..... ++....++. ....|.|.++..+|+|.|+|.|.|..|....+..|.|
T Consensus         1 v~l~C~v~G~P~P~v~W~k~~~~l~~~~~-~~~~~~~~~-~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V   75 (75)
T cd05893           1 VRLECRVSGVPHPQIFWKKENESLTHNTD-RVSMHQDNC-GYICLLIQGATKEDAGWYTVSAKNEAGIVSCTARLDV   75 (75)
T ss_pred             CEEEEEEeEecCCEEEEEECCEECCCCCC-eEEEEEcCC-CEEEEEECCCCHHHCEEEEEEEEcCCCEEEEEEEEeC
Confidence            47899999999999999999998865332 233322211 1236999999999999999999999999988877754

Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.

>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2)

Probab=99.64  E-value=8.9e-15  Score=89.56  Aligned_cols=84  Identities=27%  Similarity=0.566  Sum_probs=67.9

Q ss_pred             CeeeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcce
Q psy7036         120 SIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESN  199 (254)
Q Consensus       120 ~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~  199 (254)
                      ..+.+.+|+.+.|.|.+.+.|.|.+.|++++..+............. .  .+.|.|.++..+|+|.|+|.|.|..|...
T Consensus         9 ~~v~v~eG~~v~L~C~v~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~-~--~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~   85 (92)
T cd05891           9 DVVTIMEGKTLNLTCTVFGNPDPEVIWFKNDQDIELSEHYSVKLEQG-K--YASLTIKGVTSEDSGKYSINVKNKYGGET   85 (92)
T ss_pred             CcEEEcCCCEEEEEEEEEEeCCCeEEEEECCEECCCCCCEEEEEcCC-C--EEEEEECCCChhhCEEEEEEEEeCCCcee
Confidence            45678899999999999999999999999998876554433333222 1  13799999999999999999999999998


Q ss_pred             EEEEEEE
Q psy7036         200 ATISLNF  206 (254)
Q Consensus       200 ~~~~~~v  206 (254)
                      .++.|.|
T Consensus        86 ~~~~v~~   92 (92)
T cd05891          86 VDVTVSV   92 (92)
T ss_pred             eEEEEEC
Confidence            8887754

Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.

>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2

Probab=99.64  E-value=2.5e-15  Score=89.20  Aligned_cols=75  Identities=27%  Similarity=0.364  Sum_probs=59.4

Q ss_pred             CCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcCCCceEEEEEEE
Q psy7036          23 GNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLN  102 (254)
Q Consensus        23 g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~  102 (254)
                      |+++.|.|.+.|.|.|.++|++++..+....++.+..  ..   ....|.|.+++.+|+|.|+|.+.|..|.......+.
T Consensus         1 G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~--~~---~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~~~   75 (78)
T cd05743           1 GETVEFTCVATGVPTPIINWRLNWGHVPDSARVSITS--EG---GYGTLTIRDVKESDQGAYTCEAINTRGMVFGIPDGI   75 (78)
T ss_pred             CCEEEEEEEEEEecCCEEEEEECCeECCCCCCEEEEE--CC---CEEEEEECCCChHHCEEEEEEEEecCCEEEecccEE
Confidence            7899999999999999999999998876554433321  11   223799999999999999999999999866555444

Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.

>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=99.64  E-value=9.2e-15  Score=89.35  Aligned_cols=83  Identities=19%  Similarity=0.383  Sum_probs=65.2

Q ss_pred             CeeeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcce
Q psy7036         120 SIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESN  199 (254)
Q Consensus       120 ~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~  199 (254)
                      ....+..|+.+.|.|.+.|.|.|.+.|++++..+............    ..+.|.|.++..+|.|.|+|.|.|..|...
T Consensus         8 ~~~~v~~G~~v~l~C~~~G~P~p~v~W~~~g~~~~~~~~~~~~~~~----~~~~L~I~~v~~~D~g~Y~C~A~N~~G~~~   83 (90)
T cd04972           8 NATVVYEGGTATIRCTAEGSPLPKVEWIIAGLIVIQTRTDTLETTV----DIYNLQLSNITSETQTTVTCTAENPVGQAN   83 (90)
T ss_pred             cCEEEcCCCcEEEEEEEEEcCCCeEEEEECCEEccCCccEEEEecC----CEEEEEEecCCcccCEEEEEEEECCCCcee
Confidence            3445788999999999999999999999999877543321111111    123799999999999999999999999988


Q ss_pred             EEEEEEE
Q psy7036         200 ATISLNF  206 (254)
Q Consensus       200 ~~~~~~v  206 (254)
                      .++.|.|
T Consensus        84 ~~~~L~v   90 (90)
T cd04972          84 VSVQVTV   90 (90)
T ss_pred             EEEEEeC
Confidence            8877754

TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo

>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins

Probab=99.64  E-value=1.1e-14  Score=90.49  Aligned_cols=92  Identities=27%  Similarity=0.413  Sum_probs=70.1

Q ss_pred             CCeeEeCCCceeecCCCeEEEEEEEeeCCCC-ceEEEeCCEEeeeCC--cceEEEeecCCcceEEEEEEeccCCC-CCeE
Q psy7036           8 APSFTQKPQLRQEDEGNRLIFECQLLCNPKP-DIVWFRGETQLSEDT--RTVMKTTPIGTNKYLVALELDDVIET-DAGL   83 (254)
Q Consensus         8 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~-~v~W~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~i~~~~~~-d~G~   83 (254)
                      +|.+.. +....+.+|+++.|.|.+.|.|.| .+.|++++..+....  ++.+..... .....+.|.|.++..+ |.|.
T Consensus         2 pp~i~~-~~~~~~~~G~~v~L~C~~~g~P~P~~v~W~~~~~~i~~~~~~r~~i~~~~~-~~~~~s~L~I~~v~~~d~~G~   79 (98)
T cd05758           2 PPIITS-EATQYAILGDKGRVECFIFSTPPPDRIVWTWKENELESGSSGRYTVETDPS-PGGVLSTLTISNTQESDFQTS   79 (98)
T ss_pred             CCeEcC-CCcEEEeCCCcEEEEEEEcccCCCCEeEEEECCEEccCCCCCCEEEEEecC-CCceEEEEEECCcccccccee
Confidence            566654 566788999999999999999998 599999999886543  333332211 2334458999999984 4899


Q ss_pred             EEEEEEcCCCceEEEEEE
Q psy7036          84 YKVKAKNKMGEVAASINL  101 (254)
Q Consensus        84 Y~C~~~~~~~~~~~~~~l  101 (254)
                      |.|.|.|..|.....+.|
T Consensus        80 Y~C~A~N~~G~~~~~~~L   97 (98)
T cd05758          80 YNCTAWNSFGSGTAIISL   97 (98)
T ss_pred             EEEEEEcCCCcccEEEEe
Confidence            999999999987776654

Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3)

Probab=99.64  E-value=3.8e-15  Score=84.64  Aligned_cols=66  Identities=27%  Similarity=0.411  Sum_probs=55.0

Q ss_pred             EEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcceEEEEEEEe
Q psy7036         130 LLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFD  207 (254)
Q Consensus       130 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~v~  207 (254)
                      ++|.|.+.|.|.|.+.|+|+|..+....        .+    ..|.|.++..+|+|.|+|.|.|..|....++.+.+.
T Consensus         1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~~--------~~----~~L~i~~v~~~D~G~YtC~a~N~~g~~~~~~~~~l~   66 (67)
T cd05863           1 VKLPVKVAAYPPPEFQWYKDGKLISGKH--------SQ----HSLQIKDVTEASAGTYTLVLWNSAAGLEKRISLELI   66 (67)
T ss_pred             CEEEEEEEEeCCCEEEEEECCEECcccC--------Cc----CEEEECCCCHHHCEEEEEEEEECCccEEEEEEEEEE
Confidence            4789999999999999999999885221        11    279999999999999999999999987777766653

Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.

>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=99.64  E-value=3.7e-15  Score=85.82  Aligned_cols=68  Identities=22%  Similarity=0.518  Sum_probs=53.9

Q ss_pred             CCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcCCCceEEEEEE
Q psy7036          23 GNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINL  101 (254)
Q Consensus        23 g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l  101 (254)
                      |++++|.|.+.|.|.|.|+|+|++..+....+...     +    ...|.|.++  .|+|.|+|.+.|..|....++.|
T Consensus         1 G~~v~L~C~a~G~P~P~v~W~k~g~~l~~~~~~~~-----~----~~~L~i~~~--~d~G~Y~C~A~N~~G~~~~~a~l   68 (69)
T cd05739           1 GGSVNLTCVAVGAPMPYVKWMKGGEELTKEDEMPV-----G----RNVLELTNI--YESANYTCVAISSLGMIEATAQV   68 (69)
T ss_pred             CCeEEEEEEeeecCCCEEEEEECCEECCCccceec-----C----ccEEEEecc--ccCeeEEEEEEeCCCEEEEEEEE
Confidence            68899999999999999999999988755433211     1    116888886  48999999999999987776655

Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).

>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)

Probab=99.63  E-value=7.8e-15  Score=86.90  Aligned_cols=75  Identities=24%  Similarity=0.375  Sum_probs=61.2

Q ss_pred             CCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcceEEEEEEE
Q psy7036         127 GKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNF  206 (254)
Q Consensus       127 g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~v  206 (254)
                      |+.+.|.|.+.|.|.|.+.|++++..+............++     .|.|.+++.+|.|.|+|.|.|..|.....+.|.|
T Consensus         1 G~~~~l~C~~~g~P~p~i~W~~~g~~~~~~~~~~~~~~~~~-----~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V   75 (76)
T cd04978           1 GETGRLDCEAEGIPQPTITWRLNGVPIEELPPDPRRRVDGG-----TLILSNVQPNDTAVYQCNASNVHGYLLANAFVHV   75 (76)
T ss_pred             CCeEEEEEEceeeCCCEEEEEECCEECCCCCCcceEEccCC-----EEEECCCChhhCEEEEEEEEccCCeEEEeEEEEE
Confidence            67899999999999999999999988765443211222222     7999999999999999999999999888887776

Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins

Probab=99.63  E-value=9.2e-15  Score=89.50  Aligned_cols=87  Identities=26%  Similarity=0.466  Sum_probs=64.6

Q ss_pred             eEeCCCceeecCCCeEEEEEEEeeCCCCceEEEe-CCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEE
Q psy7036          11 FTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFR-GETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAK   89 (254)
Q Consensus        11 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~   89 (254)
                      +.+.|....+.+|+++.|.|.+.|.|. .+.|++ ++..+....+.....    .....+.|.|.+++.+|+|.|+|.+.
T Consensus         3 v~v~p~~~~v~~G~~~~l~C~~~G~p~-~i~W~~~~~~~~~~~~~~~~~~----~~~~~~~L~I~~v~~~D~G~Y~C~A~   77 (92)
T cd04977           3 VDIVPSQGEISVGESKFFLCQVIGEPK-DISWFSPNGEKLVTQQQISVVQ----NDDVRSTLTIYNANIEDAGIYKCVAT   77 (92)
T ss_pred             EEEecCcEEECCCCeEEEEEEeEeeCC-eEEEECCCCCEeccCCCEEEEe----CCCCEEEEEEecCCcccCEEEEEEEE
Confidence            456777889999999999999999874 899998 566555433332221    12234489999999999999999999


Q ss_pred             cCCCc-eEEEEEEE
Q psy7036          90 NKMGE-VAASINLN  102 (254)
Q Consensus        90 ~~~~~-~~~~~~l~  102 (254)
                      |..|. ...++.|.
T Consensus        78 N~~g~~~~~sv~l~   91 (92)
T cd04977          78 DAKGTESEATVNLK   91 (92)
T ss_pred             cCCCCcceeEEEEE
Confidence            98654 45555554

Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s

>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins

Probab=99.63  E-value=7.7e-15  Score=86.31  Aligned_cols=73  Identities=36%  Similarity=0.540  Sum_probs=59.6

Q ss_pred             EEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcceEEEEEEE
Q psy7036         130 LLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNF  206 (254)
Q Consensus       130 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~v  206 (254)
                      +.|.|.+.|.|.|.+.|+|++..+.......+.....    .+.|.|.++..+|+|.|+|.|.|..|....++.|.|
T Consensus         2 ~~l~c~~~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~----~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V   74 (74)
T cd05748           2 VRLEVPISGRPTPTVTWSKDGKPLKLSGRVQIETTAS----STSLVIKNAERSDSGKYTLTLKNPAGEKSATINVKV   74 (74)
T ss_pred             EEEEeeEeeeCCCeEEEEECCEEcCCCCeEEEEECCC----eEEEEECCCCcCcCEEEEEEEECCCccEEEEEEEEC
Confidence            6899999999999999999999885554433333222    247999999999999999999999999888877754

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-

>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=99.63  E-value=8.3e-15  Score=85.22  Aligned_cols=71  Identities=31%  Similarity=0.613  Sum_probs=57.8

Q ss_pred             eEEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcceEEEEEEE
Q psy7036         129 RLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNF  206 (254)
Q Consensus       129 ~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~v  206 (254)
                      ++.|.|.+.|.|.|.+.|+|++..+.......  ...++     .|.|.+++.+|.|.|+|.|.|..|....+..|.|
T Consensus         1 ~v~l~C~~~G~P~p~v~W~k~g~~~~~~~~~~--~~~~~-----~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V   71 (71)
T cd05723           1 DVIFECEVTGKPTPTVKWVKNGDMVIPSDYFK--IVKEH-----NLQVLGLVKSDEGFYQCIAENDVGNVQASAQLII   71 (71)
T ss_pred             CEEEEEEEEEeCCCEEEEEECCeECCCCCCEE--EEecC-----CEEEEcCCcccCEEEEEEEEcCCCEEEEEEEEEC
Confidence            47899999999999999999998876544332  22233     5788899999999999999999999888887754

Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2)

Probab=99.63  E-value=1.9e-15  Score=87.00  Aligned_cols=68  Identities=21%  Similarity=0.399  Sum_probs=55.0

Q ss_pred             EEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEE
Q psy7036          26 LIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLNF  103 (254)
Q Consensus        26 v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v  103 (254)
                      +.|.|.+.|.|.|.++|||||.++....+.    . .+     ..|.|.++..+|+|.|+|.+.|..|......++.+
T Consensus         1 ~~~~c~v~G~P~P~v~W~k~g~~l~~~~~~----~-~~-----~~L~I~~v~~~D~G~YtC~a~N~~G~~~~~~t~~l   68 (70)
T cd05864           1 VKIPVKYYGYPPPEVKWYKNGQLIVLNHTF----K-RG-----VHLTIYEVTEKDAGNYTVVLTNPITKEEQRHTFQL   68 (70)
T ss_pred             CEEEeEEEEeCCCEEEEEECCEECCCCCEE----c-cC-----CEEEECcCCHHHCEEEEEEEEECCCceeeEEEEEE
Confidence            468999999999999999999998654321    1 11     16999999999999999999999997766665554

Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=99.63  E-value=8e-15  Score=88.51  Aligned_cols=81  Identities=27%  Similarity=0.553  Sum_probs=66.6

Q ss_pred             CCCeeeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCc
Q psy7036         118 KPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGE  197 (254)
Q Consensus       118 ~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~  197 (254)
                      .+....+..|+.+.|.|.+.|.|.|.+.|++++..+.....  +... ++     .|.|.++..+|.|.|+|.|.|..|.
T Consensus         5 ~p~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~g~~~~~~~~--~~~~-~~-----~L~i~~~~~~D~G~Y~C~a~N~~G~   76 (85)
T cd05728           5 VISDTEADIGSSLRWECKASGNPRPAYRWLKNGQPLASENR--IEVE-AG-----DLRITKLSLSDSGMYQCVAENKHGT   76 (85)
T ss_pred             cCCccEEcCCCcEEEEEEeeEeCCCEEEEEECCEECCCCCe--EEEe-CC-----EEEEeeCCHHHCEEEEEEEECCCCe
Confidence            44566788999999999999999999999999998764432  2222 22     7999999999999999999999999


Q ss_pred             ceEEEEEEE
Q psy7036         198 SNATISLNF  206 (254)
Q Consensus       198 ~~~~~~~~v  206 (254)
                      ...++.|.|
T Consensus        77 ~~~~~~l~V   85 (85)
T cd05728          77 IYASAELAV   85 (85)
T ss_pred             EEEEEEEEC
Confidence            888777654

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1

Probab=99.63  E-value=1e-14  Score=89.22  Aligned_cols=82  Identities=22%  Similarity=0.344  Sum_probs=62.9

Q ss_pred             CCeeEeCCCceeecCC---CeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccC-CCCCeE
Q psy7036           8 APSFTQKPQLRQEDEG---NRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVI-ETDAGL   83 (254)
Q Consensus         8 ~p~~~~~~~~~~v~~g---~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~G~   83 (254)
                      .|.|...|....+.++   ..+.|.|.+.|.|.+.++|+|++..+..... ++... ++      .|.|.++. ..|+|.
T Consensus         1 ~P~f~~~P~~~~~~~~~~~~~v~l~C~a~G~P~P~i~W~k~~~~i~~~~~-~~~~~-~g------~L~I~~~~~~~D~G~   72 (93)
T cd05849           1 GPVFEEQPIDTIYPEESTEGKVSVNCRARANPFPIYKWRKNNLDIDLTND-RYSMV-GG------NLVINNPDKYKDAGR   72 (93)
T ss_pred             CCEEEECCCCEEecCCccCCeEEEeCcCccCCCCEEEEEECCEEccCCCC-eEEEE-CC------EEEECcCCcCCCCEE
Confidence            3788888888766554   4899999999999999999999998753222 22111 11      69998885 689999


Q ss_pred             EEEEEEcCCCceEE
Q psy7036          84 YKVKAKNKMGEVAA   97 (254)
Q Consensus        84 Y~C~~~~~~~~~~~   97 (254)
                      |+|.|.|..|...+
T Consensus        73 Y~C~A~N~~G~~~s   86 (93)
T cd05849          73 YVCIVSNIYGKVRS   86 (93)
T ss_pred             EEEEEEeCcceEEE
Confidence            99999999987543

Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=99.63  E-value=2.3e-15  Score=92.17  Aligned_cols=81  Identities=21%  Similarity=0.359  Sum_probs=62.6

Q ss_pred             CceeecCCCeEEEEEEEee-----CCCCceEEEeCCEEeeeC--CcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEE
Q psy7036          16 QLRQEDEGNRLIFECQLLC-----NPKPDIVWFRGETQLSED--TRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKA   88 (254)
Q Consensus        16 ~~~~v~~g~~v~l~C~~~~-----~~~~~v~W~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~   88 (254)
                      ....+.+|+++.|.|.+.+     .|.+.+.|||++..+...  ...++..  .+     ..|.|.++..+|+|.|+|.+
T Consensus         7 ~~~~v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~~~~~~~~~~~~~r~~~--~~-----~~L~I~~~~~~DsG~Y~C~~   79 (94)
T cd05756           7 KKSYVLEGEPVVIKCPLFYSYIAQSPGLNLTWYKSDGKTPIPTEERSRMHQ--QK-----DLLWFLPAALEDSGLYTCVV   79 (94)
T ss_pred             eEEEEecCCCeEEECCCCCcccccCCCceEEEEEcCCCCcccccccceeee--cC-----CeEEEccCCcccCeEEEEEE
Confidence            3456789999999999988     688899999998764321  1222221  11     17999999999999999999


Q ss_pred             EcCCCceEEEEEEEE
Q psy7036          89 KNKMGEVAASINLNF  103 (254)
Q Consensus        89 ~~~~~~~~~~~~l~v  103 (254)
                      .|..|.....+.|.|
T Consensus        80 ~N~~g~~~~~~~L~v   94 (94)
T cd05756          80 RNSTYCMKVSISLTV   94 (94)
T ss_pred             cCCCccEEEEEEEEC
Confidence            999999888877764

Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1

Probab=99.63  E-value=1.3e-14  Score=89.19  Aligned_cols=84  Identities=29%  Similarity=0.567  Sum_probs=63.0

Q ss_pred             CeeeecCCCeEEEEEEEeeCCC-CeEEEEE-CCEecccCCcceEEE-cCCCCceeeEEEEccCCCCCceeEEEEEEcCC-
Q psy7036         120 SIRQEDDGKRLLFECRIQADPA-PTVIWSH-SGVQVKEDKRHKFSI-DKDGHSYFASLEIIDVTIEDAGKYKVTAKNEL-  195 (254)
Q Consensus       120 ~~~~~~~g~~~~l~C~~~~~~~-~~~~W~~-~~~~~~~~~~~~~~~-~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~-  195 (254)
                      ....+..|+.+.|.|.+.|.|. |.+.|++ ++..+..... ++.. ..+.  +.++|.|.+++.+|.|.|+|.|.|.. 
T Consensus         8 ~~~~v~~G~~v~l~C~v~G~P~~p~i~W~~~~g~~l~~~~~-r~~v~~~~~--~~~~L~I~~v~~~D~G~YtC~A~N~~~   84 (96)
T cd05865           8 SQGEISVGESKFFLCQVAGEAKDKDISWFSPNGEKLTPNQQ-RISVVRNDD--YSSTLTIYNANIDDAGIYKCVVSNEDE   84 (96)
T ss_pred             CccEECCCCeEEEEEEEeCCCCCCEEEEECCCCcCccccCC-eEEEEeCCC--CceEEEEeccChhhCEEEEEEEEcCCC
Confidence            3446778999999999999985 6999998 7766544222 2222 1111  12489999999999999999999996 


Q ss_pred             CcceEEEEEEE
Q psy7036         196 GESNATISLNF  206 (254)
Q Consensus       196 ~~~~~~~~~~v  206 (254)
                      |....++.|.|
T Consensus        85 g~~~~s~~l~v   95 (96)
T cd05865          85 GESEATVNVKI   95 (96)
T ss_pred             CcEEEEEEEEE
Confidence            77888877765

Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans

>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2

Probab=99.63  E-value=1.3e-14  Score=87.24  Aligned_cols=79  Identities=16%  Similarity=0.295  Sum_probs=60.2

Q ss_pred             CeEEEEEEEeeCCCC--ceEEEeCCEEeeeCC-cceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcCCCceEEEEE
Q psy7036          24 NRLIFECQLLCNPKP--DIVWFRGETQLSEDT-RTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASIN  100 (254)
Q Consensus        24 ~~v~l~C~~~~~~~~--~v~W~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~  100 (254)
                      ++++|.|.+.|.|.+  .++|+++|..+.... ...+.....  ....+.|.|.+++..|+|.|+|.|.|..|...+.+.
T Consensus         1 ~~~~L~C~a~g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~~~--~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~~~~   78 (85)
T cd05854           1 ENLTLQCHASHDPTMDLTFTWSLDDFPIDLDKPNGHYRRMEV--KETIGDLVIVNAQLSHAGTYTCTAQTVVDSASASAT   78 (85)
T ss_pred             CcEEEEEEEecCCCCCeEEEEEECCeEccccCCCCcEEEEEe--cceEeEEEEccCChhhCeEEEEEEecCCCCEEEEEE
Confidence            478999999998876  589999999875432 111111110  011237999999999999999999999999999999


Q ss_pred             EEEe
Q psy7036         101 LNFS  104 (254)
Q Consensus       101 l~v~  104 (254)
                      |.|.
T Consensus        79 L~V~   82 (85)
T cd05854          79 LVVR   82 (85)
T ss_pred             EEEE
Confidence            9986

Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB

Probab=99.63  E-value=8.9e-15  Score=85.74  Aligned_cols=74  Identities=27%  Similarity=0.469  Sum_probs=58.0

Q ss_pred             EEEEEeeCCCCeEEEEECCEecccCCcceEEE-cCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcceEEEEEE
Q psy7036         132 FECRIQADPAPTVIWSHSGVQVKEDKRHKFSI-DKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLN  205 (254)
Q Consensus       132 l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~  205 (254)
                      |.|.+.|+|.|.++|+|++..+.......... ......+.+.|.|.++..+|+|.|+|.|.|..|....++.+.
T Consensus         3 i~~~v~G~P~Pti~W~kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~~~~~   77 (79)
T cd05855           3 IPFTVKGNPKPTLQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDEKNVSAH   77 (79)
T ss_pred             EEEEEeEeCCCceEEEECCEECCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCcccceEEEee
Confidence            67999999999999999999997554322211 112223445899999999999999999999999988887664

TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.

>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4

Probab=99.63  E-value=6e-15  Score=87.24  Aligned_cols=72  Identities=28%  Similarity=0.529  Sum_probs=55.0

Q ss_pred             EEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcCCCceEE--EEEEEE
Q psy7036          26 LIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAA--SINLNF  103 (254)
Q Consensus        26 v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~--~~~l~v  103 (254)
                      |+|.|.+.|.|.|.++|+|+|..+...... +......     ..|.|.+++.+|+|.|+|.+.|..|....  .+.|.|
T Consensus         1 v~L~C~~~g~P~p~v~W~k~g~~l~~~~~~-~~~~~~~-----~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~l~v   74 (77)
T cd05760           1 VTLRCHIDGHPRPTYQWFRDGTPLSDGQGN-YSVSSKE-----RTLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNFTLSI   74 (77)
T ss_pred             CEEEEEeeecCCCcEEEEECCEECCCCCcc-EEEeCCC-----CEEEEeeCCcccCEEEEEEEEeCCCeEeeCceEEEEE
Confidence            579999999999999999999988654321 1111111     17999999999999999999999998644  455554

Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s

>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.63  E-value=6.9e-15  Score=89.91  Aligned_cols=77  Identities=22%  Similarity=0.448  Sum_probs=60.4

Q ss_pred             CCeEEEEEEEeeCCCCceEEEeCCEEeee------CCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcCCCceE
Q psy7036          23 GNRLIFECQLLCNPKPDIVWFRGETQLSE------DTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVA   96 (254)
Q Consensus        23 g~~v~l~C~~~~~~~~~v~W~~~~~~~~~------~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~   96 (254)
                      |+.++|.|.+.|.|.+.+.|+|++..+..      ....++.....      ..|.|.+++.+|+|.|+|.+.|..|...
T Consensus         1 G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v~~~------~~L~I~~v~~~D~G~Y~C~a~N~~G~~~   74 (90)
T cd05726           1 GRTVTFQCEATGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVSQT------GDLTITNVQRSDVGYYICQTLNVAGSIL   74 (90)
T ss_pred             CCEEEEEEECCccCCCEEEEEeCCCcceeecccCCCCCCeEEECCC------CeEEEeeCChhhCEEEEEEEEcCCCceE
Confidence            78999999999999999999998864311      11112222111      1699999999999999999999999999


Q ss_pred             EEEEEEEec
Q psy7036          97 ASINLNFSR  105 (254)
Q Consensus        97 ~~~~l~v~~  105 (254)
                      ..+.|.|.+
T Consensus        75 ~~~~l~V~~   83 (90)
T cd05726          75 TKAYLEVTD   83 (90)
T ss_pred             EEEEEEEee
Confidence            999999875

Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=99.63  E-value=4.5e-15  Score=87.42  Aligned_cols=67  Identities=15%  Similarity=0.405  Sum_probs=56.1

Q ss_pred             CeeEeCCCceeecCCCeEEEEEEEeeCCC-CceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEE
Q psy7036           9 PSFTQKPQLRQEDEGNRLIFECQLLCNPK-PDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVK   87 (254)
Q Consensus         9 p~~~~~~~~~~v~~g~~v~l~C~~~~~~~-~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~   87 (254)
                      |.+...|+...+.+|++|+|+|.+.+.|. ..+.|||||..+....               ..|.|.++ .+|+|.|+|.
T Consensus         1 ~vv~~~P~~~~v~~G~~V~L~C~~~~~p~~~~~~W~kng~~l~~~~---------------~~l~i~~~-~~dsG~Y~C~   64 (78)
T cd05752           1 AVVSLDPPWTTIFQGEKVTLTCNGFNSPEQNSTQWYHNGKLLETTT---------------NSYRIRAA-NNDSGEYRCQ   64 (78)
T ss_pred             CeEEeCCCCeEeeCCCCEEEEEeCCCCCCCccEEEEECCEEeeccC---------------CeEEEeec-ccCCEEeEEE
Confidence            56778888889999999999999988775 4699999998873211               16899999 9999999999


Q ss_pred             EEcC
Q psy7036          88 AKNK   91 (254)
Q Consensus        88 ~~~~   91 (254)
                      +.+.
T Consensus        65 a~~~   68 (78)
T cd05752          65 TQGS   68 (78)
T ss_pred             CCCC
Confidence            9865

Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs)

Probab=99.63  E-value=5.6e-15  Score=87.56  Aligned_cols=73  Identities=22%  Similarity=0.519  Sum_probs=58.5

Q ss_pred             eEeCCCceeecCCCeEEEEEEEeeCCCC-ceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEE
Q psy7036          11 FTQKPQLRQEDEGNRLIFECQLLCNPKP-DIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAK   89 (254)
Q Consensus        11 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~   89 (254)
                      |++.|+++.+.+|+++.|.|.+.|.|.| .|.|+|+|..+.....      .  .   .+.|.|.++  .|+|.|.|.|.
T Consensus         1 f~~~P~~~~v~~G~~v~l~C~a~G~P~P~~I~W~k~g~~l~~~~~------~--~---~s~L~i~~~--~d~g~Y~C~A~   67 (81)
T cd05749           1 FTVEPEDLSVTANTPFNLTCQAVGPPEPVEILWWQGGSPLGDPPA------P--S---PSVLNVPGL--NETSKFSCEAH   67 (81)
T ss_pred             CcCCCCceEEcCCCCEEEEEEeeeecCCeEEEEEECCEECCCCCC------C--C---CCEEEEccc--cCCeEEEEEEE
Confidence            4567888899999999999999999999 7999999998754110      0  1   116888876  57899999999


Q ss_pred             cCCCceE
Q psy7036          90 NKMGEVA   96 (254)
Q Consensus        90 ~~~~~~~   96 (254)
                      |..|...
T Consensus        68 N~~G~~~   74 (81)
T cd05749          68 NAKGVTT   74 (81)
T ss_pred             eccCcEE
Confidence            9998654

Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c

>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin

Probab=99.62  E-value=1.5e-14  Score=84.98  Aligned_cols=74  Identities=30%  Similarity=0.482  Sum_probs=57.8

Q ss_pred             EEEEEEEeeCCCCeEEEEECCEecccCCc-ceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcceEEEEEEE
Q psy7036         130 LLFECRIQADPAPTVIWSHSGVQVKEDKR-HKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNF  206 (254)
Q Consensus       130 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~v  206 (254)
                      +.|.|.+.|.|.|.+.|+|++..+..... ..+.....+   ...|.|.+++.+|.|.|+|.|.|..|....+..|.|
T Consensus         1 v~L~C~v~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~---~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v   75 (75)
T cd05744           1 VRLECRVSAIPPPQIFWKKNNEMLTYNTDRISLYQDNCG---RICLLIQNANKEDAGWYTVSAVNEAGVVSCNARLDV   75 (75)
T ss_pred             CEEEEEEeecCCCeEEEEECCEECCCCCCcEEEEEcCCC---eEEEEECCCCcccCEEEEEEEEcCCCcEEEEEEEeC
Confidence            47899999999999999999998864332 222222222   126999999999999999999999999888877654

Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).

>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

Probab=99.62  E-value=1.9e-14  Score=90.17  Aligned_cols=94  Identities=26%  Similarity=0.444  Sum_probs=65.5

Q ss_pred             CccccCCCeeeecCCCeEEEEEEEeeCCCCeEEEEECCEecccC---CcceEEEcCCCCceeeEEEEccCCCCCceeEEE
Q psy7036         113 PTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKED---KRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKV  189 (254)
Q Consensus       113 ~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C  189 (254)
                      |.+...+....+.+|+.+.|.|.+.|.|.|.+.|+|++..+...   .........++......+.+..++.+|.|.|+|
T Consensus         2 P~i~~~p~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~D~G~Y~C   81 (100)
T cd07693           2 PRIVEHPSDLIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGRSDEGVYVC   81 (100)
T ss_pred             CeEEecCceeEEcCCCeEEEEeeCCcCCCCEEEEEECCEECccccCCCCcceEEecCCcEEEEEeeccCCCcCcCEEEEE
Confidence            45555666778889999999999999999999999999987652   111222223332221122333346899999999


Q ss_pred             EEEcCCCc-ceEEEEEEE
Q psy7036         190 TAKNELGE-SNATISLNF  206 (254)
Q Consensus       190 ~~~~~~~~-~~~~~~~~v  206 (254)
                      .|.|..|. ....+.|.|
T Consensus        82 ~a~N~~G~~~s~~~~l~v   99 (100)
T cd07693          82 VAHNSLGEAVSRNASLEV   99 (100)
T ss_pred             EEEccccceecceEEEEe
Confidence            99999998 456666554

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res

>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=99.62  E-value=1.3e-14  Score=86.19  Aligned_cols=76  Identities=26%  Similarity=0.520  Sum_probs=58.7

Q ss_pred             EEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCC---CCceeeEEEEccCCCCCceeEEEEEEcCCCcceEEEEEEE
Q psy7036         131 LFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKD---GHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNF  206 (254)
Q Consensus       131 ~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~v  206 (254)
                      .|.|.+.|.|.|.++|+|+|..+.............   .....+.|.|.++..+|.|.|+|.|.|..|....++.+.+
T Consensus         2 ~i~~~v~G~P~P~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~~~~   80 (81)
T cd04971           2 CIPFTVRGNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQDSKSISAHF   80 (81)
T ss_pred             eEEEEeEeeCCCcEEEEECCEECcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCeeeEEEeee
Confidence            368999999999999999999987654322221111   2223457999999999999999999999999988877653

TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun

>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.62  E-value=1.2e-14  Score=88.38  Aligned_cols=81  Identities=26%  Similarity=0.427  Sum_probs=62.8

Q ss_pred             CCCceeecCCCeEEEEEEE-eeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcCC
Q psy7036          14 KPQLRQEDEGNRLIFECQL-LCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKM   92 (254)
Q Consensus        14 ~~~~~~v~~g~~v~l~C~~-~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~   92 (254)
                      .|....+.+|+++.|.|.+ .|.|.+.+.|+|++..+..... +......      ..|.|.+++.+|+|.|+|.+.|..
T Consensus         2 ~p~~~~~~~G~~v~l~C~~~~g~p~p~i~W~k~g~~~~~~~~-~~~~~~~------~~L~I~~~~~~D~G~Y~C~a~N~~   74 (86)
T cd05724           2 EPSDTQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLDNE-RVRIVDD------GNLLIAEARKSDEGTYKCVATNMV   74 (86)
T ss_pred             CCccEEEeCCCCEEEEEECCCCCCCCEEEEEECCEECCCCCC-CEEEccC------CEEEEeECCcccCEEEEEEEEecc
Confidence            4667788999999999998 6889999999999998765322 1221111      179999999999999999999998


Q ss_pred             CceE-EEEEE
Q psy7036          93 GEVA-ASINL  101 (254)
Q Consensus        93 ~~~~-~~~~l  101 (254)
                      |... ..+.|
T Consensus        75 G~~~s~~~~l   84 (86)
T cd05724          75 GERESAAARL   84 (86)
T ss_pred             CceeeeeEEE
Confidence            8753 34444

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago

>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=99.61  E-value=2.4e-14  Score=88.76  Aligned_cols=85  Identities=20%  Similarity=0.457  Sum_probs=63.7

Q ss_pred             CeeeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCc---ceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCC
Q psy7036         120 SIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKR---HKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELG  196 (254)
Q Consensus       120 ~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~  196 (254)
                      .......|+.+.|.|.+.|.|.|.+.|++++..+.....   .++....+.  ..+.|.|.++..+|.|.|+|.|.|..|
T Consensus        10 ~~~~~~~g~~v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~v~~~~--~~~~L~I~~v~~~D~G~Y~C~A~N~~G   87 (97)
T cd05869          10 NQTAMELEEQITLTCEASGDPIPSITWRTSTRNISSEEKTLDGHIVVRSHA--RVSSLTLKYIQYTDAGEYLCTASNTIG   87 (97)
T ss_pred             CceEEEcCCCEEEEEEeeEeCCCEEEEEECCccccCCccccCccEEEEcCc--cEEEEEEecCccCcCEEEEEEEecCCC
Confidence            334455589999999999999999999998876643211   112111111  224799999999999999999999999


Q ss_pred             cceEEEEEEE
Q psy7036         197 ESNATISLNF  206 (254)
Q Consensus       197 ~~~~~~~~~v  206 (254)
                      ....++.|.|
T Consensus        88 ~~~~~~~l~v   97 (97)
T cd05869          88 QDSQSMYLEV   97 (97)
T ss_pred             CeeEEEEEEC
Confidence            9988887764

Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr

>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin

Probab=99.61  E-value=1.7e-14  Score=84.49  Aligned_cols=73  Identities=41%  Similarity=0.672  Sum_probs=61.2

Q ss_pred             CCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcceEEEEEEE
Q psy7036         127 GKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNF  206 (254)
Q Consensus       127 g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~v  206 (254)
                      |+.+.|.|.+.+.|.+.+.|++++..+.....  .....++     .|.|.+++.+|.|.|+|.|.|..|....+..|.|
T Consensus         1 G~~v~L~C~~~g~P~p~v~W~k~~~~~~~~~~--~~~~~~~-----~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   73 (73)
T cd04969           1 GGDVIIECKPKAAPKPTISWSKGTELLTNSSR--ICIWPDG-----SLEILNVTKSDEGKYTCFAENFFGKANSTGSLSV   73 (73)
T ss_pred             CCeEEEEEeeeEcCCCEEEEEECCEEcccCCC--EEECCCC-----eEEEccCChhHCEEEEEEEECCCCceEEEEEEEC
Confidence            67899999999999999999999988764443  3333333     7999999999999999999999999988887764

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.61  E-value=3.3e-15  Score=86.42  Aligned_cols=68  Identities=29%  Similarity=0.550  Sum_probs=55.8

Q ss_pred             EEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcCCCceEEEEEE
Q psy7036          26 LIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINL  101 (254)
Q Consensus        26 v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l  101 (254)
                      |.|.|.+.|.|.|.++|+|++..+....++.+  ...+      .|.|.+++.+|+|.|+|.+.|..|....++.|
T Consensus         1 v~L~C~~~g~P~p~i~W~k~g~~~~~~~~~~~--~~~~------~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L   68 (69)
T cd05746           1 VQIPCSAQGDPEPTITWNKDGVQVTESGKFHI--SPEG------YLAIRDVGVADQGRYECVARNTIGYASVSMVL   68 (69)
T ss_pred             CEeEecceEeCCCEEEEEECCEECCCCCCEEE--CCCC------EEEECcCChhhCEEEEEEEECCCCcEEEEEEe
Confidence            57999999999999999999998865544332  1111      79999999999999999999999998776655

Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.

>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor

Probab=99.61  E-value=2e-14  Score=87.05  Aligned_cols=81  Identities=26%  Similarity=0.491  Sum_probs=63.8

Q ss_pred             eeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcc-eEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcceE
Q psy7036         122 RQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRH-KFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNA  200 (254)
Q Consensus       122 ~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~  200 (254)
                      ..+..|+.+.|.|.+.|.|.|.+.|+|++..+...... ........    ..|.|.++..+|+|.|+|.+.|..|....
T Consensus         4 ~~v~~G~~~~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~----~~l~i~~~~~~D~G~Y~C~a~N~~G~~~~   79 (85)
T cd05857           4 HAVPAANTVKFRCPAAGNPTPTMRWLKNGKEFKQEHRIGGYKVRNQH----WSLIMESVVPSDKGNYTCVVENEYGSINH   79 (85)
T ss_pred             EEcCCCCEEEEEEEcCCCCCCEEEEEECCEECCCCCceeeeEEeCCc----eEEEEccCCcccCEEEEEEEEeCCCEEEE
Confidence            34678999999999999999999999999988654321 11111111    26899999999999999999999999888


Q ss_pred             EEEEEE
Q psy7036         201 TISLNF  206 (254)
Q Consensus       201 ~~~~~v  206 (254)
                      ++.|.|
T Consensus        80 ~~~l~v   85 (85)
T cd05857          80 TYHLDV   85 (85)
T ss_pred             EEEEEC
Confidence            887764

Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.

>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin

Probab=99.61  E-value=5.5e-14  Score=88.75  Aligned_cols=83  Identities=27%  Similarity=0.377  Sum_probs=64.8

Q ss_pred             CCCeEEEEEEEeeCCCCeEEEEECCEecccCC-cceEEEcCCCCceeeEEEEccCC-CCCceeEEEEEEcCCCcceEEEE
Q psy7036         126 DGKRLLFECRIQADPAPTVIWSHSGVQVKEDK-RHKFSIDKDGHSYFASLEIIDVT-IEDAGKYKVTAKNELGESNATIS  203 (254)
Q Consensus       126 ~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~i~~~~-~~d~G~y~C~~~~~~~~~~~~~~  203 (254)
                      .|..+.|.|.+.|.|.+.+.|++++..+.... +........+....+.|.|.++. .+|.|.|+|.|.|..|.....+.
T Consensus        22 ~g~~v~L~C~a~G~P~p~i~W~k~g~~l~~~~~r~~~~~~~~~~~~~s~L~I~~v~~~~D~G~Y~C~A~N~~G~~~~~i~  101 (109)
T cd05773          22 GSSDANLVCQAQGVPRVQFRWAKNGVPLDLGNPRYEETTEHTGTVHTSILTIINVSAALDYALFTCTAHNSLGEDSLDIQ  101 (109)
T ss_pred             CCCEEEEEEECcccCCCEEEEEECCEECCCCCCeEEEEeeccCccceeEEEECcCCccCCCEEEEEEEEeCCccCcEEEE
Confidence            56889999999999999999999999886432 22222222233334689999997 58999999999999999999988


Q ss_pred             EEEec
Q psy7036         204 LNFDS  208 (254)
Q Consensus       204 ~~v~~  208 (254)
                      |.+..
T Consensus       102 L~~~~  106 (109)
T cd05773         102 LVSTS  106 (109)
T ss_pred             EEecC
Confidence            88764

Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p

>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=99.60  E-value=1.3e-14  Score=85.19  Aligned_cols=72  Identities=29%  Similarity=0.512  Sum_probs=55.5

Q ss_pred             EEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcCCCce-EEEEEEEE
Q psy7036          26 LIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGEV-AASINLNF  103 (254)
Q Consensus        26 v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~l~v  103 (254)
                      ++|.|.+.|.|.|.++|+|++..+......++.....+      .|.|.+++.+|+|.|+|.+.|..|.. ...+.|.|
T Consensus         1 a~l~C~~~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~g------~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l~v   73 (74)
T cd05738           1 ATMLCAASGNPDPEITWFKDFLPVDTTSNGRIKQLRSG------ALQIENSEESDQGKYECVATNSAGTRYSAPANLYV   73 (74)
T ss_pred             CEEEEEEeEecCCEEEEEECCEECccCCCCCEEEcCCc------EEEECCCChhhCEEEEEEEECCCCceEcccEEEEE
Confidence            47999999999999999999998764332333322222      69999999999999999999999874 45666654

Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.

>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2)

Probab=99.60  E-value=1.6e-14  Score=88.30  Aligned_cols=81  Identities=26%  Similarity=0.416  Sum_probs=58.9

Q ss_pred             CCeEEEEEEEeeCCCCceEEEeC----CEEeeeCCcceEEEeecC----CcceEEEEEEeccCCCCCeEEEEEEEcCCCc
Q psy7036          23 GNRLIFECQLLCNPKPDIVWFRG----ETQLSEDTRTVMKTTPIG----TNKYLVALELDDVIETDAGLYKVKAKNKMGE   94 (254)
Q Consensus        23 g~~v~l~C~~~~~~~~~v~W~~~----~~~~~~~~~~~~~~~~~~----~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~   94 (254)
                      |+++.|.|.+.|.|.|.++|+|+    +..+..............    .....+.|.|.+++.+|+|.|+|.+.|..|.
T Consensus         1 G~~v~L~C~~~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~   80 (90)
T cd05858           1 GSTVEFVCKVYSDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNSIGI   80 (90)
T ss_pred             CCeEEEEEEEecCCCCEEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeCCCc
Confidence            78999999999999999999984    444432221111111100    0112247999999999999999999999999


Q ss_pred             eEEEEEEEE
Q psy7036          95 VAASINLNF  103 (254)
Q Consensus        95 ~~~~~~l~v  103 (254)
                      ...++.|.|
T Consensus        81 ~~~~a~L~V   89 (90)
T cd05858          81 SHHSAWLTV   89 (90)
T ss_pred             ccceEEEEE
Confidence            888888876

Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.

>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1)

Probab=99.60  E-value=1.1e-14  Score=87.68  Aligned_cols=78  Identities=24%  Similarity=0.487  Sum_probs=61.7

Q ss_pred             eecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcCCCceEEE
Q psy7036          19 QEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAAS   98 (254)
Q Consensus        19 ~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~   98 (254)
                      ....|+++.|.|.+.+.|.+.+.|++++..+........       ......|.|.+++.+|+|.|+|.+.|..|.....
T Consensus         5 ~~~~G~~v~L~C~~~g~p~p~i~W~k~~~~~~~~~~~~~-------~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~   77 (82)
T cd05856           5 ARPVGSSVRLKCVASGNPRPDITWLKDNKPLTPTEIGES-------RKKKWTLSLKNLKPEDSGKYTCHVSNRAGEINAT   77 (82)
T ss_pred             eccCCCeEEEEEEeeEeCCCcEEEEECCcCCcCCcccee-------cCceEEEEEccCChhhCEEEEEEEEcCCccEEEE
Confidence            456799999999999999999999999987754332211       1112379999999999999999999999987777


Q ss_pred             EEEEE
Q psy7036          99 INLNF  103 (254)
Q Consensus        99 ~~l~v  103 (254)
                      +.|.|
T Consensus        78 ~~v~v   82 (82)
T cd05856          78 YKVDV   82 (82)
T ss_pred             EEEeC
Confidence            76653

Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.

>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.60  E-value=6.9e-15  Score=85.57  Aligned_cols=70  Identities=29%  Similarity=0.450  Sum_probs=56.0

Q ss_pred             EEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEE
Q psy7036          26 LIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLNF  103 (254)
Q Consensus        26 v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v  103 (254)
                      +.|.|.+.|.|.|.+.|+|++..+..... ..  ...     ...|.|.+++..|+|.|+|.+.|..|.....+.|.|
T Consensus         1 ~~L~C~~~G~P~P~v~W~k~~~~~~~~~~-~~--~~~-----~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   70 (71)
T cd05876           1 LVLECIAEGLPTPEVHWDRIDGPLSPNRT-KK--LNN-----NKTLQLDNVLESDDGEYVCTAENSEGSARHHYTVTV   70 (71)
T ss_pred             CEEEEEeeEecCCeEEEEECCcCCCCCce-eE--EcC-----CCEEEEcccCHHhCEEEEEEEEcCCCeEEEEEEEEE
Confidence            47899999999999999999887654321 11  111     127999999999999999999999999888887765

Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4

Probab=99.60  E-value=2.4e-14  Score=85.17  Aligned_cols=79  Identities=13%  Similarity=0.216  Sum_probs=59.6

Q ss_pred             CeEEEEEEEee--CCCCceEEEeCCEEeeeCC-cceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcCCCceEEEEE
Q psy7036          24 NRLIFECQLLC--NPKPDIVWFRGETQLSEDT-RTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASIN  100 (254)
Q Consensus        24 ~~v~l~C~~~~--~~~~~v~W~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~  100 (254)
                      +++.|.|.+.+  .+.+.+.|++||..+.... ..++...  ++....+.|.|.+++..|+|.|+|.|.|..+....++.
T Consensus         1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~~~~~~~~~--~~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a~a~   78 (85)
T cd05853           1 ESIVLPCQVSHDHSLDIVFTWSFNGHLIDFQKDGDHFERV--GGQDSAGDLMIRSIQLKHAGKYVCMVQTSVDKLSAAAD   78 (85)
T ss_pred             CcEEEEEEeccCCCCCcEEEEEECCEECcccCCCccEEEe--ccCCCCCcEEEecCCHHHCEEEEEEEEcccCceEEEEE
Confidence            47899999976  4477899999999996321 1122211  11011127999999999999999999999999999999


Q ss_pred             EEEe
Q psy7036         101 LNFS  104 (254)
Q Consensus       101 l~v~  104 (254)
                      |.|.
T Consensus        79 L~V~   82 (85)
T cd05853          79 LIVR   82 (85)
T ss_pred             EEEe
Confidence            9987

Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.

>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.59  E-value=1.5e-14  Score=85.32  Aligned_cols=73  Identities=25%  Similarity=0.420  Sum_probs=55.2

Q ss_pred             EEEEEEEeeCCCCceEEEeCCEEee-eCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEE
Q psy7036          26 LIFECQLLCNPKPDIVWFRGETQLS-EDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLNF  103 (254)
Q Consensus        26 v~l~C~~~~~~~~~v~W~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v  103 (254)
                      ++|.|.+.|.|.|.++|+|++.... .....++.....+.     .|.|.+++..|+|.|+|.+.|..|.....+.|.|
T Consensus         1 a~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~~~~-----~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~~~l~V   74 (75)
T cd05763           1 ARLECAATGHPTPQIAWQKDGGTDFPAARERRMHVMPEDD-----VFFIVDVKIEDTGVYSCTAQNTAGSISANATLTV   74 (75)
T ss_pred             CEeEeecccccCCEEEEEeCCCccCCcccccceEEecCCC-----EEEEeeCCcccCEEEEEEEEcCCCEEEeeEEEEE
Confidence            4789999999999999999986422 11111222211111     6999999999999999999999999888888876

Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins

Probab=99.59  E-value=2.7e-14  Score=84.46  Aligned_cols=74  Identities=20%  Similarity=0.363  Sum_probs=60.2

Q ss_pred             EEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEEe
Q psy7036          26 LIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFS  104 (254)
Q Consensus        26 v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~  104 (254)
                      +.|.|.+.|.|.+.+.|+|++..+.......+.....+.     .|.|.+++..|.|.|+|.+.|..|.....+.|.|.
T Consensus         1 ~~L~C~v~g~P~p~v~W~k~~~~l~~~~~~~~~~~~~~~-----~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~   74 (76)
T cd05736           1 ASLRCHAEGIPLPRLTWLKNGMDITPKLSKQLTLIANGS-----ELHISNVRYEDTGAYTCIAKNEAGVDEDISSLFVE   74 (76)
T ss_pred             CEeEeEeeecCCCEEEEEECCEECCCCCCccEEEeCCCC-----EEEECcCCcccCEEEEEEEEcCCCCcceEEEEEEE
Confidence            368999999999999999999988765444443322221     69999999999999999999999998888888774

Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.

>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4

Probab=99.59  E-value=2.7e-14  Score=84.40  Aligned_cols=72  Identities=22%  Similarity=0.471  Sum_probs=54.9

Q ss_pred             EEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcceE--EEEEEE
Q psy7036         130 LLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNA--TISLNF  206 (254)
Q Consensus       130 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~--~~~~~v  206 (254)
                      ++|.|.+.|.|.|.+.|+|++..+.............+     .|.|.++..+|.|.|.|.|.|..|....  .++|.|
T Consensus         1 v~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~-----~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~l~v   74 (77)
T cd05760           1 VTLRCHIDGHPRPTYQWFRDGTPLSDGQGNYSVSSKER-----TLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNFTLSI   74 (77)
T ss_pred             CEEEEEeeecCCCcEEEEECCEECCCCCccEEEeCCCC-----EEEEeeCCcccCEEEEEEEEeCCCeEeeCceEEEEE
Confidence            47899999999999999999998765432222222222     7999999999999999999999997643  455544

Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s

>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2)

Probab=99.59  E-value=1.4e-14  Score=83.41  Aligned_cols=68  Identities=24%  Similarity=0.459  Sum_probs=55.2

Q ss_pred             EEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcceEEEEEEE
Q psy7036         130 LLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNF  206 (254)
Q Consensus       130 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~v  206 (254)
                      +.|.|.+.|.|.|.+.|+|++..+.....  +  ..+     ..|.|.++..+|+|.|+|.|.|..|......++.+
T Consensus         1 ~~~~c~v~G~P~P~v~W~k~g~~l~~~~~--~--~~~-----~~L~I~~v~~~D~G~YtC~a~N~~G~~~~~~t~~l   68 (70)
T cd05864           1 VKIPVKYYGYPPPEVKWYKNGQLIVLNHT--F--KRG-----VHLTIYEVTEKDAGNYTVVLTNPITKEEQRHTFQL   68 (70)
T ss_pred             CEEEeEEEEeCCCEEEEEECCEECCCCCE--E--ccC-----CEEEECcCCHHHCEEEEEEEEECCCceeeEEEEEE
Confidence            36899999999999999999999864422  1  111     17999999999999999999999998777666655

Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=99.59  E-value=2.2e-14  Score=87.57  Aligned_cols=81  Identities=25%  Similarity=0.373  Sum_probs=57.8

Q ss_pred             CCeEEEEEEEeeCCCCceEEEeCC----EEeeeCCcc--eEEEe--ecCCcceEEEEEEeccCCCCCeEEEEEEEcCCCc
Q psy7036          23 GNRLIFECQLLCNPKPDIVWFRGE----TQLSEDTRT--VMKTT--PIGTNKYLVALELDDVIETDAGLYKVKAKNKMGE   94 (254)
Q Consensus        23 g~~v~l~C~~~~~~~~~v~W~~~~----~~~~~~~~~--~~~~~--~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~   94 (254)
                      |+.++|.|.+.|.|.|.++|+|++    ..+......  .....  ..........|.|.+++.+|+|.|+|.|.|..|.
T Consensus         1 G~~v~l~C~v~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~   80 (90)
T cd04974           1 GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGNSIGP   80 (90)
T ss_pred             CCcEEEEEEEeCCCCCeEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEeecccCc
Confidence            688999999999999999999964    232211111  11110  0111111237999999999999999999999999


Q ss_pred             eEEEEEEEE
Q psy7036          95 VAASINLNF  103 (254)
Q Consensus        95 ~~~~~~l~v  103 (254)
                      ...++.|.|
T Consensus        81 ~~~sa~L~V   89 (90)
T cd04974          81 SHHSAWLTV   89 (90)
T ss_pred             ccCCEEEEe
Confidence            888888876

Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.

>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.59  E-value=8.6e-15  Score=84.81  Aligned_cols=69  Identities=26%  Similarity=0.561  Sum_probs=55.4

Q ss_pred             EEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEE
Q psy7036          26 LIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLNF  103 (254)
Q Consensus        26 v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v  103 (254)
                      ++|.|.+.|.|.|.+.|+|++..+... +....  ..+      .|.|.+++.+|+|.|+|.+.|..|.....+.|.|
T Consensus         1 v~l~C~~~g~P~p~v~W~k~~~~~~~~-~~~~~--~~~------~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   69 (69)
T cd05725           1 VEFQCEVGGDPVPTVLWRKEDGELPKG-RAEIL--DDK------SLKIRNVTAGDEGSYTCEAENMVGKIEASASLTV   69 (69)
T ss_pred             CEEEEECccCCCCEEEEEECCccCCCC-cEEEe--eCC------EEEECcCChhHCEEEEEEEEcCCCcEEEEEEEEC
Confidence            579999999999999999998766432 22221  111      7999999999999999999999999888777764

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin

Probab=99.59  E-value=3.1e-14  Score=86.06  Aligned_cols=79  Identities=15%  Similarity=0.225  Sum_probs=59.3

Q ss_pred             CeEEEEEEEeeCCCC--ceEEEeCCEEeeeCCc-ceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcCCCceEEEEE
Q psy7036          24 NRLIFECQLLCNPKP--DIVWFRGETQLSEDTR-TVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASIN  100 (254)
Q Consensus        24 ~~v~l~C~~~~~~~~--~v~W~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~  100 (254)
                      +++.|.|.+.+.|.+  .+.|+++|..+..... ..+.....  ....+.|.|.+++..|+|.|+|.+.|..|.....+.
T Consensus         1 e~~~L~C~~~g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~~--~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~   78 (85)
T cd04970           1 ESITLQCHASHDPTLDLTFTWSFNGVPIDFDKDGGHYRRVGG--KDSNGDLMIRNAQLKHAGKYTCTAQTVVDSLSASAD   78 (85)
T ss_pred             CcEEEEEEEecCCCCCeEEEEEECCeEeeccCCCccEEEEec--ccccceEEEccCCHHhCeeeEEEEecCCCcEEEEEE
Confidence            478999999998877  5799999998764322 11110000  011227999999999999999999999999988999


Q ss_pred             EEEe
Q psy7036         101 LNFS  104 (254)
Q Consensus       101 l~v~  104 (254)
                      |.|.
T Consensus        79 l~V~   82 (85)
T cd04970          79 LIVR   82 (85)
T ss_pred             EEEE
Confidence            9886

Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR)

Probab=99.59  E-value=3.1e-14  Score=82.65  Aligned_cols=70  Identities=27%  Similarity=0.482  Sum_probs=56.8

Q ss_pred             EEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcceEEEEEEEe
Q psy7036         130 LLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFD  207 (254)
Q Consensus       130 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~v~  207 (254)
                      +.|.|.+.|.|.|.+.|+|++..+....  .... ..     ..|.|.++..+|+|.|+|.|.|..|.....+.+.+.
T Consensus         1 ~~l~c~v~g~P~p~v~W~k~g~~l~~~~--~~~~-~~-----~~L~I~~v~~~D~G~YtC~a~N~~g~~~~~~~~~~~   70 (71)
T cd04976           1 VRLPVKVKAYPPPEIQWYKNGKLISEKN--RTKK-SG-----HSLTIKDVTEEDAGNYTVVLTNKQAKLEKRLTFTLV   70 (71)
T ss_pred             CEEEeEEEEeCCCEEEEEECCEECCCCC--EEEc-CC-----CEEEECcCCHHHCEEEEEEEEcCCccEEEEEEEEEE
Confidence            4689999999999999999999886542  2221 22     279999999999999999999999988777776653

Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa

>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5

Probab=99.58  E-value=7e-14  Score=85.90  Aligned_cols=68  Identities=28%  Similarity=0.676  Sum_probs=54.7

Q ss_pred             CCCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCC-CCCceeEEEEEEcCCCcce
Q psy7036         126 DGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVT-IEDAGKYKVTAKNELGESN  199 (254)
Q Consensus       126 ~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~G~y~C~~~~~~~~~~  199 (254)
                      +|+.+.|.|.+.|.|.|.+.|+|++..+......++... ++     .|.|.++. .+|.|.|+|.|.|..|...
T Consensus        18 ~g~~v~l~C~~~G~P~P~i~W~k~g~~l~~~~~~~~~~~-~g-----~L~i~~~~~~~D~G~Y~C~A~N~~G~~~   86 (94)
T cd05848          18 DEKKVILNCEARGNPVPTYRWLRNGTEIDTESDYRYSLI-DG-----NLIISNPSEVKDSGRYQCLATNSIGSIL   86 (94)
T ss_pred             CCCEEEEEEEeeecCCCEEEEEECCeECccCCCceEEee-CC-----eEEEccCCccCcCEEEEEEEEcCCCeEE
Confidence            478999999999999999999999998864443333332 22     68888875 6999999999999999763

Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.

>cd04967 Ig1_Contactin First Ig domain of contactin

Probab=99.58  E-value=6.6e-14  Score=85.75  Aligned_cols=81  Identities=23%  Similarity=0.444  Sum_probs=61.7

Q ss_pred             CeeEeCCCceeecC---CCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccC-CCCCeEE
Q psy7036           9 PSFTQKPQLRQEDE---GNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVI-ETDAGLY   84 (254)
Q Consensus         9 p~~~~~~~~~~v~~---g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~G~Y   84 (254)
                      |.|...|....+.+   |+++.|.|.+.|.|.+.++|++++..+.......+... .+      .|.|.++. ..|+|.|
T Consensus         2 P~f~~~p~~~~~~~~~~~~~~~l~C~~~g~p~p~i~W~k~~~~l~~~~~~~~~~~-~~------~L~i~~~~~~~d~G~Y   74 (91)
T cd04967           2 PVFEEQPDDTIFPEESDEGKVSLNCRARGSPPPTYRWLMNGTEIDDEPDSRYSLV-GG------NLVISNPSKAKDAGRY   74 (91)
T ss_pred             CeeEeCCCCEEccCCCCCCEEEEEEeeeEcCCCEEEEEECCEECCCCCCCCEEEE-CC------EEEEecCCccCCCEEE
Confidence            67888888776544   46799999999999999999999998843333333221 11      68898887 4899999


Q ss_pred             EEEEEcCCCceE
Q psy7036          85 KVKAKNKMGEVA   96 (254)
Q Consensus        85 ~C~~~~~~~~~~   96 (254)
                      +|.+.|..|...
T Consensus        75 ~C~a~N~~G~~~   86 (91)
T cd04967          75 QCLASNIVGTVL   86 (91)
T ss_pred             EEEEEcCCCEEE
Confidence            999999998644

Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata

>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.58  E-value=3e-14  Score=83.83  Aligned_cols=73  Identities=27%  Similarity=0.530  Sum_probs=57.4

Q ss_pred             CCeEEEEEEEeeCCCCceEEEe-CCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcCCCceEEEEEE
Q psy7036          23 GNRLIFECQLLCNPKPDIVWFR-GETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINL  101 (254)
Q Consensus        23 g~~v~l~C~~~~~~~~~v~W~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l  101 (254)
                      |+.+.|.|.+.|.|.+.+.|++ ++..+....+...  ...+      +|.|.+++..|+|.|+|.+.|..|.....+.|
T Consensus         1 G~~~~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~--~~~~------~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l   72 (74)
T cd05764           1 GQRATLRCKARGDPEPAIHWISPDGKLISNSSRTLV--YDNG------TLDILITTVKDTGSFTCIASNAAGEATATVEL   72 (74)
T ss_pred             CCeEEEEEEccCcCCCEEEEEeCCCEEecCCCeEEE--ecCC------EEEEEECChhhCEEEEEEEECCCCeEEEEEEE
Confidence            7899999999999999999997 5665544333221  1121      69999999999999999999999988777776


Q ss_pred             EE
Q psy7036         102 NF  103 (254)
Q Consensus       102 ~v  103 (254)
                      .|
T Consensus        73 ~v   74 (74)
T cd05764          73 HI   74 (74)
T ss_pred             EC
Confidence            54

Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=99.58  E-value=3.9e-14  Score=83.08  Aligned_cols=72  Identities=24%  Similarity=0.435  Sum_probs=57.3

Q ss_pred             EEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcc-eEEEEEEE
Q psy7036         130 LLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGES-NATISLNF  206 (254)
Q Consensus       130 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~-~~~~~~~v  206 (254)
                      ++|.|.+.|.|.|.+.|+|++..+......++....++     .|.|.++..+|.|.|+|.|.|..|.. +....|.|
T Consensus         1 a~l~C~~~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~g-----~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l~v   73 (74)
T cd05738           1 ATMLCAASGNPDPEITWFKDFLPVDTTSNGRIKQLRSG-----ALQIENSEESDQGKYECVATNSAGTRYSAPANLYV   73 (74)
T ss_pred             CEEEEEEeEecCCEEEEEECCEECccCCCCCEEEcCCc-----EEEECCCChhhCEEEEEEEECCCCceEcccEEEEE
Confidence            36899999999999999999988764333344444444     69999999999999999999999974 56666655

Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.

>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins

Probab=99.58  E-value=7e-14  Score=86.74  Aligned_cols=85  Identities=21%  Similarity=0.480  Sum_probs=64.9

Q ss_pred             CeeeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCC---cceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCC
Q psy7036         120 SIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDK---RHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELG  196 (254)
Q Consensus       120 ~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~  196 (254)
                      ....+.+|+.+.|.|.+.+.|.|.+.|++++..+....   ..++.....  ...+.|.|.+++.+|.|.|.|.|.|..|
T Consensus         9 ~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~--~~~~~L~I~~v~~~D~G~Y~C~a~N~~G   86 (96)
T cd05732           9 ENQTAVELEQITLTCEAEGDPIPEITWRRATRNFSEGDKSLDGRIVVRGH--ARVSSLTLKDVQLTDAGRYDCEASNRIG   86 (96)
T ss_pred             CceeEecCCcEEEEEEEeEcCCCcEEEEECCcccCCCCccccceEEEeCC--ccEEEEEECcCCcCcCEEeEEEEEeCCC
Confidence            34567789999999999999999999999886554321   112222221  1234899999999999999999999999


Q ss_pred             cceEEEEEEE
Q psy7036         197 ESNATISLNF  206 (254)
Q Consensus       197 ~~~~~~~~~v  206 (254)
                      ....++.|.|
T Consensus        87 ~~~~s~~l~v   96 (96)
T cd05732          87 GDQQSMYLEV   96 (96)
T ss_pred             CcEEEEEEeC
Confidence            9888877653

Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole

>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2

Probab=99.58  E-value=1.2e-13  Score=84.84  Aligned_cols=72  Identities=26%  Similarity=0.495  Sum_probs=55.4

Q ss_pred             CCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCC-CCCceeEEEEEEcCCCcce-EEEEE
Q psy7036         127 GKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVT-IEDAGKYKVTAKNELGESN-ATISL  204 (254)
Q Consensus       127 g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~G~y~C~~~~~~~~~~-~~~~~  204 (254)
                      |+.+.|.|.+.|.|.+.+.|++++..+.......+.... +     .|.|.++. ..|.|.|.|.|.|..|... ..+.|
T Consensus        19 g~~v~l~C~a~g~P~p~i~W~~~g~~l~~~~~~~~~~~~-g-----~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s~~a~l   92 (94)
T cd05850          19 EEKVTLGCRARASPPATYRWKMNGTEIKFAPESRYTLVA-G-----NLVINNPQKARDAGSYQCLAINRCGTVVSREANL   92 (94)
T ss_pred             CCeEEEEeEceeCCCCEEEEEECCEECccCCCceEEEEC-C-----eEEEccCCccCcCEEEEEEEEcCcCcEEEEEEEE
Confidence            568999999999999999999999988644333333332 2     68888765 5999999999999999763 34443

Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins

Probab=99.57  E-value=2.9e-14  Score=85.98  Aligned_cols=81  Identities=17%  Similarity=0.317  Sum_probs=59.3

Q ss_pred             CCeEEEEEEEeeC--CCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcCCCceEEEEE
Q psy7036          23 GNRLIFECQLLCN--PKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASIN  100 (254)
Q Consensus        23 g~~v~l~C~~~~~--~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~  100 (254)
                      |+++.|.|.+.+.  |.+.+.|++++..+...................+.|.|.+++.+|+|.|+|.+.|..+....+..
T Consensus         1 Ge~~~L~C~~~g~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~~s~~   80 (84)
T cd05742           1 GETLVLNCTVLTELNEGVDFQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNATLKDSGTYTCAASSGTMDQKESTK   80 (84)
T ss_pred             CCeEEEEEEEEeCCCccEEEEEecCCcccCCceEeecccccccceEEEEEEEECCCChhhCEEEEEEEccCCCceEEEEE
Confidence            7899999999998  78899999887654322111000011112234568999999999999999999999998888777


Q ss_pred             EEE
Q psy7036         101 LNF  103 (254)
Q Consensus       101 l~v  103 (254)
                      |.|
T Consensus        81 v~v   83 (84)
T cd05742          81 VNI   83 (84)
T ss_pred             EEE
Confidence            765

Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF

>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.57  E-value=4.2e-14  Score=82.26  Aligned_cols=70  Identities=24%  Similarity=0.485  Sum_probs=56.2

Q ss_pred             EEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcceEEEEEEE
Q psy7036         130 LLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNF  206 (254)
Q Consensus       130 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~v  206 (254)
                      +.|.|.+.|.|.|.+.|+|++..+.... ... ...++     .|.|.++..+|.|.|+|.|.|..|....++.|.|
T Consensus         1 ~~L~C~~~G~P~P~v~W~k~~~~~~~~~-~~~-~~~~~-----~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   70 (71)
T cd05876           1 LVLECIAEGLPTPEVHWDRIDGPLSPNR-TKK-LNNNK-----TLQLDNVLESDDGEYVCTAENSEGSARHHYTVTV   70 (71)
T ss_pred             CEEEEEeeEecCCeEEEEECCcCCCCCc-eeE-EcCCC-----EEEEcccCHHhCEEEEEEEEcCCCeEEEEEEEEE
Confidence            4689999999999999999987764332 111 22222     7999999999999999999999999888887765

Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2

Probab=99.57  E-value=9.1e-14  Score=83.63  Aligned_cols=79  Identities=23%  Similarity=0.466  Sum_probs=60.0

Q ss_pred             CeEEEEEEEeeCCCC--eEEEEECCEecccCC-cceE-EEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcceEEEE
Q psy7036         128 KRLLFECRIQADPAP--TVIWSHSGVQVKEDK-RHKF-SIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATIS  203 (254)
Q Consensus       128 ~~~~l~C~~~~~~~~--~~~W~~~~~~~~~~~-~~~~-~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~  203 (254)
                      +.+.|.|.+.+.|.|  .+.|++++..+.... ..++ ......  ..+.|.|.+++..|+|.|+|.|.|..|...++..
T Consensus         1 ~~~~L~C~a~g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~--~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~~~~   78 (85)
T cd05854           1 ENLTLQCHASHDPTMDLTFTWSLDDFPIDLDKPNGHYRRMEVKE--TIGDLVIVNAQLSHAGTYTCTAQTVVDSASASAT   78 (85)
T ss_pred             CcEEEEEEEecCCCCCeEEEEEECCeEccccCCCCcEEEEEecc--eEeEEEEccCChhhCeEEEEEEecCCCCEEEEEE
Confidence            368999999999877  589999998875432 1111 111000  1138999999999999999999999999999999


Q ss_pred             EEEec
Q psy7036         204 LNFDS  208 (254)
Q Consensus       204 ~~v~~  208 (254)
                      |.|..
T Consensus        79 L~V~~   83 (85)
T cd05854          79 LVVRG   83 (85)
T ss_pred             EEEEC
Confidence            98874

Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2

Probab=99.57  E-value=5.3e-14  Score=83.50  Aligned_cols=74  Identities=26%  Similarity=0.421  Sum_probs=57.8

Q ss_pred             CCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcceEEEEE
Q psy7036         127 GKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISL  204 (254)
Q Consensus       127 g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~  204 (254)
                      |+.+.|.|.+.+.|.|.+.|++++..+....+...... .+   ...|.|.++..+|.|.|+|.|.|..|.......+
T Consensus         1 G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~-~~---~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~~   74 (78)
T cd05743           1 GETVEFTCVATGVPTPIINWRLNWGHVPDSARVSITSE-GG---YGTLTIRDVKESDQGAYTCEAINTRGMVFGIPDG   74 (78)
T ss_pred             CCEEEEEEEEEEecCCEEEEEECCeECCCCCCEEEEEC-CC---EEEEEECCCChHHCEEEEEEEEecCCEEEecccE
Confidence            67899999999999999999999887765443332222 11   1379999999999999999999999977555443

Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.

>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM)

Probab=99.57  E-value=8.6e-14  Score=86.45  Aligned_cols=86  Identities=20%  Similarity=0.444  Sum_probs=63.5

Q ss_pred             CCeeeecCCCeEEEEEEEeeCCCCeEEEEEC--CEecccC---CcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEc
Q psy7036         119 PSIRQEDDGKRLLFECRIQADPAPTVIWSHS--GVQVKED---KRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKN  193 (254)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~--~~~~~~~---~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~  193 (254)
                      +....+.+|+.+.|.|.+.|.|.|.+.|+++  +..+...   ...++......  ....|.|.+++.+|+|.|+|.|.|
T Consensus         8 ~~~~~~~~G~~v~l~C~~~G~P~p~i~W~k~~~g~~~~~~~~~~~~r~~v~~~~--~~~~L~I~~v~~~D~G~Y~C~A~N   85 (98)
T cd05870           8 LKNETTVENGAATLSCKAEGEPIPEITWKRASDGHTFSEGDKSPDGRIEVKGQH--GESSLHIKDVKLSDSGRYDCEAAS   85 (98)
T ss_pred             eccEEEcCCCcEEEEEecccCCCCeEEEEECCCCceeccCCcCcCceEEEeecC--CeeEEEEeeCCcCCCEEEEEEEec
Confidence            3456788999999999999999999999994  3333211   11223322111  113799999999999999999999


Q ss_pred             CCCcceEEEEEEE
Q psy7036         194 ELGESNATISLNF  206 (254)
Q Consensus       194 ~~~~~~~~~~~~v  206 (254)
                      ..|....++.|.|
T Consensus        86 ~~G~~~~~~~l~~   98 (98)
T cd05870          86 RIGGHQKSMYLDI   98 (98)
T ss_pred             cCCcceeEEEEeC
Confidence            9999888877654

Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.56  E-value=2.6e-14  Score=82.66  Aligned_cols=68  Identities=38%  Similarity=0.777  Sum_probs=56.0

Q ss_pred             EEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcceEEEEE
Q psy7036         130 LLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISL  204 (254)
Q Consensus       130 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~  204 (254)
                      +.|.|.+.|.|.|.+.|+|++..+.....  +....++     .|.|.++..+|.|.|+|.|.|..|....++.|
T Consensus         1 v~L~C~~~g~P~p~i~W~k~g~~~~~~~~--~~~~~~~-----~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L   68 (69)
T cd05746           1 VQIPCSAQGDPEPTITWNKDGVQVTESGK--FHISPEG-----YLAIRDVGVADQGRYECVARNTIGYASVSMVL   68 (69)
T ss_pred             CEeEecceEeCCCEEEEEECCEECCCCCC--EEECCCC-----EEEECcCChhhCEEEEEEEECCCCcEEEEEEe
Confidence            47899999999999999999988764433  3333333     79999999999999999999999998877665

Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.

>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins

Probab=99.56  E-value=2.3e-13  Score=84.49  Aligned_cols=86  Identities=21%  Similarity=0.392  Sum_probs=65.1

Q ss_pred             CCeeeecCCCeEEEEEEEeeCCCC-eEEEEECCEecccCCcceEEEc--CCCCceeeEEEEccCCC-CCceeEEEEEEcC
Q psy7036         119 PSIRQEDDGKRLLFECRIQADPAP-TVIWSHSGVQVKEDKRHKFSID--KDGHSYFASLEIIDVTI-EDAGKYKVTAKNE  194 (254)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~~~~-~~~W~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~i~~~~~-~d~G~y~C~~~~~  194 (254)
                      .....+..|+.+.|.|.+.|.|.| .+.|++++..+......++...  .......+.|.|.++.. +|.|.|.|.|.|.
T Consensus         8 ~~~~~~~~G~~v~L~C~~~g~P~P~~v~W~~~~~~i~~~~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~Y~C~A~N~   87 (98)
T cd05758           8 EATQYAILGDKGRVECFIFSTPPPDRIVWTWKENELESGSSGRYTVETDPSPGGVLSTLTISNTQESDFQTSYNCTAWNS   87 (98)
T ss_pred             CCcEEEeCCCcEEEEEEEcccCCCCEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEECCccccccceeEEEEEEcC
Confidence            345567889999999999999998 6999999988765432223222  22223346899999998 4589999999999


Q ss_pred             CCcceEEEEE
Q psy7036         195 LGESNATISL  204 (254)
Q Consensus       195 ~~~~~~~~~~  204 (254)
                      .|.....+.|
T Consensus        88 ~G~~~~~~~L   97 (98)
T cd05758          88 FGSGTAIISL   97 (98)
T ss_pred             CCcccEEEEe
Confidence            9998877664

Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=99.56  E-value=8.1e-14  Score=82.81  Aligned_cols=77  Identities=26%  Similarity=0.516  Sum_probs=61.4

Q ss_pred             eeeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcceE
Q psy7036         121 IRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNA  200 (254)
Q Consensus       121 ~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~  200 (254)
                      ...+.+|+.+.|.|.+.+. .+.+.|+|+|..+....+..  ... .     .|.|.++..+|+|.|+|.+.|..|....
T Consensus         3 ~~~~~~G~~v~l~C~~~~~-~~~v~W~k~g~~l~~~~~~~--~~~-~-----~L~I~~~~~~DsG~Y~C~a~n~~g~~~~   73 (79)
T cd04973           3 SYSAHPGDLLQLRCRLRDD-VQSINWTKDGVQLGENNRTR--ITG-E-----EVQIKDAVPRDSGLYACVTSSPSGSDTT   73 (79)
T ss_pred             cEEecCCCCEEEEEEecCC-CceEEEeeCCcCCCCCceEE--EeC-C-----EEEECCCChhhCEEEEEEEeCCCCcccE
Confidence            4567789999999999886 56899999998886544332  222 2     7999999999999999999999888777


Q ss_pred             EEEEEE
Q psy7036         201 TISLNF  206 (254)
Q Consensus       201 ~~~~~v  206 (254)
                      .+.|.|
T Consensus        74 ~~~v~V   79 (79)
T cd04973          74 YFSVNV   79 (79)
T ss_pred             EEEEeC
Confidence            766553

Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.

>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins

Probab=99.55  E-value=1.3e-13  Score=81.54  Aligned_cols=73  Identities=27%  Similarity=0.532  Sum_probs=60.7

Q ss_pred             EEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcceEEEEEEEe
Q psy7036         131 LFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFD  207 (254)
Q Consensus       131 ~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~v~  207 (254)
                      .|.|.+.|.|.|.+.|+|++..+......++....++.    .|.|.++..+|.|.|+|.+.|..|....++.|.|.
T Consensus         2 ~L~C~v~g~P~p~v~W~k~~~~l~~~~~~~~~~~~~~~----~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~   74 (76)
T cd05736           2 SLRCHAEGIPLPRLTWLKNGMDITPKLSKQLTLIANGS----ELHISNVRYEDTGAYTCIAKNEAGVDEDISSLFVE   74 (76)
T ss_pred             EeEeEeeecCCCEEEEEECCEECCCCCCccEEEeCCCC----EEEECcCCcccCEEEEEEEEcCCCCcceEEEEEEE
Confidence            68999999999999999999988655444444443332    69999999999999999999999999988888775

Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.

>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=99.55  E-value=1.2e-13  Score=85.38  Aligned_cols=83  Identities=28%  Similarity=0.471  Sum_probs=61.5

Q ss_pred             CCCeeeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccC-----CCCCceeEEEEEE
Q psy7036         118 KPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDV-----TIEDAGKYKVTAK  192 (254)
Q Consensus       118 ~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~-----~~~d~G~y~C~~~  192 (254)
                      .+....+..|+.+.|.|.+.+.|.|.+.|+|++..+............++     .+.|.++     ..+|.|.|.|.|.
T Consensus         5 ~P~~~~~~~g~~v~l~C~v~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~-----~l~i~~v~~~~~~~~D~G~Y~C~a~   79 (95)
T cd05722           5 EPSDIVAVRGGPVVLNCSAEGEPPPKIEWKKDGVLLNLVSDERRQQLPNG-----SLLITSVVHSKHNKPDEGFYQCVAQ   79 (95)
T ss_pred             CCCCeEEcCCCCEEEeeecccCCCCEEEEEECCeECccccCcceEEccCC-----eEEEeeeeccCCCCCcCEEEEEEEE
Confidence            34455667899999999999999999999999998865443333333343     4555554     6889999999999


Q ss_pred             cC-CCcc-eEEEEEE
Q psy7036         193 NE-LGES-NATISLN  205 (254)
Q Consensus       193 ~~-~~~~-~~~~~~~  205 (254)
                      |. .|.. +..+.|.
T Consensus        80 N~~~G~~~s~~~~l~   94 (95)
T cd05722          80 NDSLGSIVSRTARLT   94 (95)
T ss_pred             CCccCcEEEeeeEEe
Confidence            99 8876 4455554

Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4

Probab=99.55  E-value=8.1e-14  Score=82.93  Aligned_cols=80  Identities=19%  Similarity=0.366  Sum_probs=60.2

Q ss_pred             CeEEEEEEEeeCC--CCeEEEEECCEecccC-CcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcceEEEEE
Q psy7036         128 KRLLFECRIQADP--APTVIWSHSGVQVKED-KRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISL  204 (254)
Q Consensus       128 ~~~~l~C~~~~~~--~~~~~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~  204 (254)
                      +++.|.|.+.+.+  .+.+.|+++|..+... ...++.... +....+.|.|.+++.+|+|.|+|.|.|..+....+..|
T Consensus         1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~~~~~~~~~~-~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a~a~L   79 (85)
T cd05853           1 ESIVLPCQVSHDHSLDIVFTWSFNGHLIDFQKDGDHFERVG-GQDSAGDLMIRSIQLKHAGKYVCMVQTSVDKLSAAADL   79 (85)
T ss_pred             CcEEEEEEeccCCCCCcEEEEEECCEECcccCCCccEEEec-cCCCCCcEEEecCCHHHCEEEEEEEEcccCceEEEEEE
Confidence            3678999987744  7789999999999632 222332211 00011279999999999999999999999999999999


Q ss_pred             EEec
Q psy7036         205 NFDS  208 (254)
Q Consensus       205 ~v~~  208 (254)
                      .|+.
T Consensus        80 ~V~~   83 (85)
T cd05853          80 IVRG   83 (85)
T ss_pred             EEec
Confidence            8874

Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.

>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1)

Probab=99.55  E-value=6.6e-14  Score=84.26  Aligned_cols=78  Identities=23%  Similarity=0.415  Sum_probs=61.0

Q ss_pred             eecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcceEEE
Q psy7036         123 QEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATI  202 (254)
Q Consensus       123 ~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~  202 (254)
                      ....|+.+.|.|.+.+.|.|.+.|++++..+.......  ...    ....|.|.++..+|+|.|+|.+.|..|....++
T Consensus         5 ~~~~G~~v~L~C~~~g~p~p~i~W~k~~~~~~~~~~~~--~~~----~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~   78 (82)
T cd05856           5 ARPVGSSVRLKCVASGNPRPDITWLKDNKPLTPTEIGE--SRK----KKWTLSLKNLKPEDSGKYTCHVSNRAGEINATY   78 (82)
T ss_pred             eccCCCeEEEEEEeeEeCCCcEEEEECCcCCcCCccce--ecC----ceEEEEEccCChhhCEEEEEEEEcCCccEEEEE
Confidence            35569999999999999999999999988765332211  111    113799999999999999999999999887777


Q ss_pred             EEEE
Q psy7036         203 SLNF  206 (254)
Q Consensus       203 ~~~v  206 (254)
                      .|.|
T Consensus        79 ~v~v   82 (82)
T cd05856          79 KVDV   82 (82)
T ss_pred             EEeC
Confidence            6653

Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.

>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.55  E-value=3.8e-14  Score=82.77  Aligned_cols=70  Identities=30%  Similarity=0.556  Sum_probs=55.5

Q ss_pred             EEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEE
Q psy7036          26 LIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLNF  103 (254)
Q Consensus        26 v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v  103 (254)
                      +.|.|.+.|.|.|.+.|+|++..+.... ...  ...     ...|.|.+++..|+|.|+|.+.|..|.....+.|.|
T Consensus         1 v~l~C~~~g~P~p~v~W~k~~~~~~~~~-~~~--~~~-----~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   70 (71)
T cd05731           1 LLLECIAEGLPTPEISWIKIGGELPADR-TKF--ENF-----NKTLKIDNVSEEDDGEYRCTASNSLGSARHTISVTV   70 (71)
T ss_pred             CEEEEEeeEecCCeEEEEECCeECCCCc-eeE--ecC-----CCEEEECCCCHHHCEEEEEEEEeCCceEEEEEEEEE
Confidence            4789999999999999999998764321 111  111     127999999999999999999999998887777765

Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.

>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.54  E-value=1.1e-13  Score=84.52  Aligned_cols=77  Identities=26%  Similarity=0.535  Sum_probs=61.3

Q ss_pred             CCeEEEEEEEeeCCCCeEEEEECCEeccc------CCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcceE
Q psy7036         127 GKRLLFECRIQADPAPTVIWSHSGVQVKE------DKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNA  200 (254)
Q Consensus       127 g~~~~l~C~~~~~~~~~~~W~~~~~~~~~------~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~  200 (254)
                      |+.+.|.|.+.+.|.|.+.|++++..+..      ....++....++     .|.|.+++.+|+|.|+|.+.|..|....
T Consensus         1 G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v~~~~-----~L~I~~v~~~D~G~Y~C~a~N~~G~~~~   75 (90)
T cd05726           1 GRTVTFQCEATGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVSQTG-----DLTITNVQRSDVGYYICQTLNVAGSILT   75 (90)
T ss_pred             CCEEEEEEECCccCCCEEEEEeCCCcceeecccCCCCCCeEEECCCC-----eEEEeeCChhhCEEEEEEEEcCCCceEE
Confidence            67899999999999999999998764311      112233333333     7999999999999999999999999988


Q ss_pred             EEEEEEec
Q psy7036         201 TISLNFDS  208 (254)
Q Consensus       201 ~~~~~v~~  208 (254)
                      .+.|.|..
T Consensus        76 ~~~l~V~~   83 (90)
T cd05726          76 KAYLEVTD   83 (90)
T ss_pred             EEEEEEee
Confidence            88888874

Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2

Probab=99.54  E-value=1.9e-13  Score=83.10  Aligned_cols=82  Identities=28%  Similarity=0.560  Sum_probs=61.4

Q ss_pred             CeeeecCCCeEEEEEEEeeCCCCeEEEEE-CCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcc
Q psy7036         120 SIRQEDDGKRLLFECRIQADPAPTVIWSH-SGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGES  198 (254)
Q Consensus       120 ~~~~~~~g~~~~l~C~~~~~~~~~~~W~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~  198 (254)
                      ....+..|+.+.|.|.+.|.|. .+.|++ ++..+....+  +....++..  +.|.|.++..+|+|.|+|.|.|..|..
T Consensus         8 ~~~~v~~G~~v~l~C~~~G~P~-~v~W~k~~g~~~~~~~r--~~~~~~g~~--~~L~I~~v~~~D~G~Y~C~A~N~~G~~   82 (92)
T cd05866           8 SKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIVSSQR--VVVQKEGVR--SRLTIYNANIEDAGIYRCQATDAKGQT   82 (92)
T ss_pred             cceEEcCCCeEEEEEEEEEeCC-eEEEEeCCCeEecCCCC--EEEEeCCCe--eEEEEecCChHHCEEEEEEEEcCCCcE
Confidence            4456788999999999999988 899998 4666544333  222223221  379999999999999999999999875


Q ss_pred             -eEEEEEEE
Q psy7036         199 -NATISLNF  206 (254)
Q Consensus       199 -~~~~~~~v  206 (254)
                       .+++.|.+
T Consensus        83 ~~~~i~l~~   91 (92)
T cd05866          83 QEATVVLEI   91 (92)
T ss_pred             EEEEEEEEE
Confidence             55665543

Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1)

Probab=99.54  E-value=4.4e-14  Score=81.40  Aligned_cols=68  Identities=21%  Similarity=0.398  Sum_probs=51.6

Q ss_pred             EEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcCCCceEEEEEE
Q psy7036          26 LIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINL  101 (254)
Q Consensus        26 v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l  101 (254)
                      +.|.|.+.|.|.|.+.|+|++.++..... ....  .+.     +|.|.+++.+|+|.|+|.+.+..........+
T Consensus         1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~~~-~~~~--~~~-----~L~I~~v~~~D~G~YtC~a~~~~~~~~~~~~i   68 (72)
T cd07702           1 YRLTPKVKAFPAPEVIWLKDGLPAAEKCS-RYHV--DGY-----SLVIKDVTEEDAGIYTILLGIKQYNLFKNLTI   68 (72)
T ss_pred             CeEEeeEEEcCCCeEEEEECCEECCCCCc-EEEe--CCC-----EEEECcCCHHHCEEEEEEEEccccceEeeEEE
Confidence            46899999999999999999998765422 2211  111     69999999999999999999876554444433

Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>KOG3515|consensus

Probab=99.54  E-value=1.3e-13  Score=110.80  Aligned_cols=222  Identities=14%  Similarity=0.211  Sum_probs=139.4

Q ss_pred             CeeEeCCCceeecCCCeEEEEEEEeeC-CCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEE
Q psy7036           9 PSFTQKPQLRQEDEGNRLIFECQLLCN-PKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVK   87 (254)
Q Consensus         9 p~~~~~~~~~~v~~g~~v~l~C~~~~~-~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~   87 (254)
                      |.....+-+..+..|++|.|.|.+.+. |.+.+.||+.++.+. .....   ....      .|......++.-+.|.|.
T Consensus         8 pv~~~~~l~~~~~~g~~v~l~C~v~~~pp~~~~eW~h~~~~~~-~~~~~---~~~~------~~~~~~~~~~~~~~~~c~   77 (741)
T KOG3515|consen    8 PVCESSSLTVGLRLGEDVPLPCRVNSNPPEIDVEWYHSTSGEH-GRYAT---IADP------TLVTTGDVRDTVAELNCR   77 (741)
T ss_pred             ccccCCCCChhhccCCcceeeeecCCCCCCcceEEEecCcccc-ccccc---ccCC------ceeeecchhhhhhhhhhh
Confidence            333333333478999999999999875 567899999988776 11111   1111      577777778888899999


Q ss_pred             EEcCCCc-eEEEEEEEEeccccCCCCCccccCCCeeeecCCCeEEEEEEEe--eCCCCeEEEEECCEecccCCcceEEE-
Q psy7036          88 AKNKMGE-VAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQ--ADPAPTVIWSHSGVQVKEDKRHKFSI-  163 (254)
Q Consensus        88 ~~~~~~~-~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~--~~~~~~~~W~~~~~~~~~~~~~~~~~-  163 (254)
                      +.|..+. ......+.+.      .++.............+..+.+.|...  +.|.+.+.|..+.............. 
T Consensus        78 a~ns~~~~~~~~~~l~v~------~~pa~~~~~~e~~~~~~~vvqi~c~~~~~~~P~~nlrW~~n~r~e~~~~~~~~~~~  151 (741)
T KOG3515|consen   78 AFNSVGMPSRCPMILDVD------YPPACLPELGEIFQVDKGVVQIICSAKVAGRPNPNLRWGFNNRAELNAVNQRGRVG  151 (741)
T ss_pred             hcccccCceecceeeccc------cCccccccccchhhhcCCeEEEEEeecCCCCCCcceeeeeccEEeecccCCccccc
Confidence            9988654 3334444443      344333333334455688899999654  45677899999876543322111111 


Q ss_pred             --cCCCC-ceeeEEEEccCCCCCceeEEEEEEcC---CCcceEEEEEEEecCCCCCCCCCCCCeeecCCccccccCCCCc
Q psy7036         164 --DKDGH-SYFASLEIIDVTIEDAGKYKVTAKNE---LGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLND  237 (254)
Q Consensus       164 --~~~~~-~~~~~l~i~~~~~~d~G~y~C~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~  237 (254)
                        ...++ .-.+.+.+...+..+.|.|+|.+.|.   .+...+...+.+....       ....+........+.+|. .
T Consensus       152 ~~a~gss~t~~s~l~~~v~Rka~~g~~tC~A~nr~s~~l~~~~~~~i~v~~~~-------~~~~~~~~~~~qsF~~g~-~  223 (741)
T KOG3515|consen  152 AGALGSSYTEPSLLKQTVSRKADNGNYTCPANNRNSPGLSFAKQLTIIVEAPC-------KGIGITGAQEQQSFTEGQ-T  223 (741)
T ss_pred             ccccCceeccccceeeEEEEecCCceeEcccccccCccccccceeEeeccccc-------ccceecchhhcCcccccc-e
Confidence              11111 11246888888899999999999984   4445555555554311       112222223335667788 9


Q ss_pred             EEEEEEEe-ccCCCceeC
Q psy7036         238 IVIECRLV-GEPEPTISW  254 (254)
Q Consensus       238 ~~l~C~~~-~~p~p~~~W  254 (254)
                      +.|.|.+. |+|.+.++|
T Consensus       224 inlvc~~~gg~P~~~~~w  241 (741)
T KOG3515|consen  224 INLVCNAQGGNPSQQQTW  241 (741)
T ss_pred             EEEEehhhcCCcchhhhh
Confidence            99999885 568888888

>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin

Probab=99.54  E-value=1.7e-13  Score=82.85  Aligned_cols=80  Identities=26%  Similarity=0.445  Sum_probs=59.2

Q ss_pred             CeEEEEEEEeeCCCC--eEEEEECCEecccCCc-ceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcceEEEEE
Q psy7036         128 KRLLFECRIQADPAP--TVIWSHSGVQVKEDKR-HKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISL  204 (254)
Q Consensus       128 ~~~~l~C~~~~~~~~--~~~W~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~  204 (254)
                      +.+.|.|.+.+.|.+  .+.|++++..+..... ..+.... .....+.|.|.+++.+|+|.|+|.|.|..|....+..|
T Consensus         1 e~~~L~C~~~g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~-~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l   79 (85)
T cd04970           1 ESITLQCHASHDPTLDLTFTWSFNGVPIDFDKDGGHYRRVG-GKDSNGDLMIRNAQLKHAGKYTCTAQTVVDSLSASADL   79 (85)
T ss_pred             CcEEEEEEEecCCCCCeEEEEEECCeEeeccCCCccEEEEe-cccccceEEEccCCHHhCeeeEEEEecCCCcEEEEEEE
Confidence            368999999999877  5799999988754321 1111000 00011379999999999999999999999999888888


Q ss_pred             EEec
Q psy7036         205 NFDS  208 (254)
Q Consensus       205 ~v~~  208 (254)
                      .|..
T Consensus        80 ~V~~   83 (85)
T cd04970          80 IVRG   83 (85)
T ss_pred             EEEC
Confidence            8874

Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=99.54  E-value=2.3e-13  Score=82.88  Aligned_cols=78  Identities=22%  Similarity=0.457  Sum_probs=61.6

Q ss_pred             eeeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcc-e
Q psy7036         121 IRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGES-N  199 (254)
Q Consensus       121 ~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~-~  199 (254)
                      ...+.+|+.++|.|.+.+. .|.+.|++++..+....   +....++.    .|.|.+++.+|.|.|.|.|.|..|.. +
T Consensus        12 ~~~v~~g~~v~l~C~a~g~-~p~i~W~kng~~l~~~~---~~~~~~~~----~L~I~~v~~~D~G~Y~C~a~N~~G~~~S   83 (91)
T cd05740          12 NQPPEDNQPVTLTCEAEGQ-ATYIWWVNNGSLLVPPR---LQLSNDNR----TLTFNNVTRSDTGHYQCEASNEVSNMTS   83 (91)
T ss_pred             ccccccCCcEEEEEEeCCC-CCEEEEEECCEECCCCC---EEEeCCCC----EEEECcCChhhCEEEEEEEEcCCCCEEe
Confidence            4567789999999999999 99999999998875332   22222221    79999999999999999999999975 4


Q ss_pred             EEEEEEE
Q psy7036         200 ATISLNF  206 (254)
Q Consensus       200 ~~~~~~v  206 (254)
                      ..+.|.|
T Consensus        84 ~~~~L~V   90 (91)
T cd05740          84 DPYILNV   90 (91)
T ss_pred             eeEEEEe
Confidence            4666655

Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the

>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.54  E-value=1e-13  Score=81.68  Aligned_cols=73  Identities=27%  Similarity=0.524  Sum_probs=55.4

Q ss_pred             EEEEEEEeeCCCCeEEEEECCEecc-cCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcceEEEEEEE
Q psy7036         130 LLFECRIQADPAPTVIWSHSGVQVK-EDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNF  206 (254)
Q Consensus       130 ~~l~C~~~~~~~~~~~W~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~v  206 (254)
                      +.|.|.+.|.|.|.+.|+|++.... .....++.....+    ..|.|.+++.+|+|.|.|.|.|..|.......|.|
T Consensus         1 a~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~~~----~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~~~l~V   74 (75)
T cd05763           1 ARLECAATGHPTPQIAWQKDGGTDFPAARERRMHVMPED----DVFFIVDVKIEDTGVYSCTAQNTAGSISANATLTV   74 (75)
T ss_pred             CEeEeecccccCCEEEEEeCCCccCCcccccceEEecCC----CEEEEeeCCcccCEEEEEEEEcCCCEEEeeEEEEE
Confidence            3689999999999999999886422 2222223222222    17999999999999999999999998888877766

Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.54  E-value=1.4e-13  Score=80.89  Aligned_cols=73  Identities=30%  Similarity=0.667  Sum_probs=57.1

Q ss_pred             CCeEEEEEEEeeCCCCeEEEEE-CCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcceEEEEEE
Q psy7036         127 GKRLLFECRIQADPAPTVIWSH-SGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLN  205 (254)
Q Consensus       127 g~~~~l~C~~~~~~~~~~~W~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~  205 (254)
                      |+.+.|.|.+.+.|.|.+.|++ ++..+.....  .....++     .|.|..+..+|.|.|+|.|.|..|..+.++.|.
T Consensus         1 G~~~~l~C~~~g~P~p~v~W~~~~~~~~~~~~~--~~~~~~~-----~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~   73 (74)
T cd05764           1 GQRATLRCKARGDPEPAIHWISPDGKLISNSSR--TLVYDNG-----TLDILITTVKDTGSFTCIASNAAGEATATVELH   73 (74)
T ss_pred             CCeEEEEEEccCcCCCEEEEEeCCCEEecCCCe--EEEecCC-----EEEEEECChhhCEEEEEEEECCCCeEEEEEEEE
Confidence            6789999999999999999997 5555443322  2222333     799999999999999999999999888877765


Q ss_pred             E
Q psy7036         206 F  206 (254)
Q Consensus       206 v  206 (254)
                      |
T Consensus        74 v   74 (74)
T cd05764          74 I   74 (74)
T ss_pred             C
Confidence            4

Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.53  E-value=1.3e-13  Score=82.69  Aligned_cols=75  Identities=27%  Similarity=0.458  Sum_probs=55.7

Q ss_pred             CCeEEEEEEEeeCCCCceEEEeCCE---Ee-eeCCcc--eEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcCCCceE
Q psy7036          23 GNRLIFECQLLCNPKPDIVWFRGET---QL-SEDTRT--VMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVA   96 (254)
Q Consensus        23 g~~v~l~C~~~~~~~~~v~W~~~~~---~~-~~~~~~--~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~   96 (254)
                      |++++|.|.+.|.|.|.++|+|++.   .+ ......  .+...      ....|.|.+++.+|+|.|+|.+.|..|...
T Consensus         1 G~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~------~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~   74 (81)
T cd05765           1 GETASFHCDVTGRPPPEITWEKQVHGKENLIMRPNHVRGNVVVT------NIGQLVIYNAQPQDAGLYTCTARNSGGLLR   74 (81)
T ss_pred             CCcEEEEeeccccCCCcEEEEecCCCCcceeecCCcccCCEEEc------cccEEEEccCCcccCEEEEEEEecCCceEE
Confidence            7899999999999999999999742   11 111110  11111      113799999999999999999999999988


Q ss_pred             EEEEEEE
Q psy7036          97 ASINLNF  103 (254)
Q Consensus        97 ~~~~l~v  103 (254)
                      ..+.|.|
T Consensus        75 ~~~~l~v   81 (81)
T cd05765          75 ANFPLSV   81 (81)
T ss_pred             EEEEEeC
Confidence            8887764

Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.53  E-value=1.2e-13  Score=80.04  Aligned_cols=69  Identities=36%  Similarity=0.639  Sum_probs=55.0

Q ss_pred             EEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcceEEEEEEE
Q psy7036         130 LLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNF  206 (254)
Q Consensus       130 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~v  206 (254)
                      +.|.|.+.|.|.|.+.|+|++..+... .  .....++     .|.|.++..+|+|.|+|.|.|..|....+..|.|
T Consensus         1 v~l~C~~~g~P~p~v~W~k~~~~~~~~-~--~~~~~~~-----~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   69 (69)
T cd05725           1 VEFQCEVGGDPVPTVLWRKEDGELPKG-R--AEILDDK-----SLKIRNVTAGDEGSYTCEAENMVGKIEASASLTV   69 (69)
T ss_pred             CEEEEECccCCCCEEEEEECCccCCCC-c--EEEeeCC-----EEEECcCChhHCEEEEEEEEcCCCcEEEEEEEEC
Confidence            478999999999999999998766432 1  2222232     7999999999999999999999999888777653

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.53  E-value=3e-13  Score=82.10  Aligned_cols=79  Identities=34%  Similarity=0.554  Sum_probs=61.4

Q ss_pred             CeeeecCCCeEEEEEEE-eeCCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcc
Q psy7036         120 SIRQEDDGKRLLFECRI-QADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGES  198 (254)
Q Consensus       120 ~~~~~~~g~~~~l~C~~-~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~  198 (254)
                      ....+.+|+.+.|.|.+ .+.|.+.+.|++++..+..... ......++     .|.|.++..+|.|.|+|.+.|..|..
T Consensus         4 ~~~~~~~G~~v~l~C~~~~g~p~p~i~W~k~g~~~~~~~~-~~~~~~~~-----~L~I~~~~~~D~G~Y~C~a~N~~G~~   77 (86)
T cd05724           4 SDTQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLDNE-RVRIVDDG-----NLLIAEARKSDEGTYKCVATNMVGER   77 (86)
T ss_pred             ccEEEeCCCCEEEEEECCCCCCCCEEEEEECCEECCCCCC-CEEEccCC-----EEEEeECCcccCEEEEEEEEeccCce
Confidence            45567789999999997 6889999999999988765432 22222233     79999999999999999999999875


Q ss_pred             -eEEEEE
Q psy7036         199 -NATISL  204 (254)
Q Consensus       199 -~~~~~~  204 (254)
                       ...+.+
T Consensus        78 ~s~~~~l   84 (86)
T cd05724          78 ESAAARL   84 (86)
T ss_pred             eeeeEEE
Confidence             344444

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago

>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=99.52  E-value=2.2e-13  Score=78.41  Aligned_cols=68  Identities=22%  Similarity=0.481  Sum_probs=53.2

Q ss_pred             CCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcceEEEEE
Q psy7036         127 GKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISL  204 (254)
Q Consensus       127 g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~  204 (254)
                      |+.+.|.|.+.|.|.|.+.|+|++..+.....  ... ..     ..|.|.++.  |+|.|+|.|.|..|....+..|
T Consensus         1 G~~v~L~C~a~G~P~P~v~W~k~g~~l~~~~~--~~~-~~-----~~L~i~~~~--d~G~Y~C~A~N~~G~~~~~a~l   68 (69)
T cd05739           1 GGSVNLTCVAVGAPMPYVKWMKGGEELTKEDE--MPV-GR-----NVLELTNIY--ESANYTCVAISSLGMIEATAQV   68 (69)
T ss_pred             CCeEEEEEEeeecCCCEEEEEECCEECCCccc--eec-Cc-----cEEEEeccc--cCeeEEEEEEeCCCEEEEEEEE
Confidence            67899999999999999999999988754332  211 11     268888874  7899999999999987777654

Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).

>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2)

Probab=99.52  E-value=2.9e-13  Score=82.69  Aligned_cols=80  Identities=28%  Similarity=0.453  Sum_probs=57.6

Q ss_pred             CCeEEEEEEEeeCCCCeEEEEEC----CEecccCCcceEEEcCCC-C----ceeeEEEEccCCCCCceeEEEEEEcCCCc
Q psy7036         127 GKRLLFECRIQADPAPTVIWSHS----GVQVKEDKRHKFSIDKDG-H----SYFASLEIIDVTIEDAGKYKVTAKNELGE  197 (254)
Q Consensus       127 g~~~~l~C~~~~~~~~~~~W~~~----~~~~~~~~~~~~~~~~~~-~----~~~~~l~i~~~~~~d~G~y~C~~~~~~~~  197 (254)
                      |+.+.|.|.+.+.|.|.+.|+|+    +..+.............. .    ...+.|.|.+++.+|+|.|+|.|.|..|.
T Consensus         1 G~~v~L~C~~~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~   80 (90)
T cd05858           1 GSTVEFVCKVYSDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNSIGI   80 (90)
T ss_pred             CCeEEEEEEEecCCCCEEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeCCCc
Confidence            67899999999999999999984    333332211111111111 0    01247999999999999999999999999


Q ss_pred             ceEEEEEEE
Q psy7036         198 SNATISLNF  206 (254)
Q Consensus       198 ~~~~~~~~v  206 (254)
                      ...+..|.|
T Consensus        81 ~~~~a~L~V   89 (90)
T cd05858          81 SHHSAWLTV   89 (90)
T ss_pred             ccceEEEEE
Confidence            888877766

Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.

>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b)

Probab=99.52  E-value=5.1e-13  Score=80.22  Aligned_cols=81  Identities=15%  Similarity=0.292  Sum_probs=57.1

Q ss_pred             CCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcCCC--ceEEEEE
Q psy7036          23 GNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMG--EVAASIN  100 (254)
Q Consensus        23 g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~--~~~~~~~  100 (254)
                      |++++|.|.+.+.|.+.+.|++.++........... .........+.|.|.+++.+|+|.|.|.+.+..+  ....++.
T Consensus         1 Ge~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~-~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~sv~   79 (84)
T cd05861           1 GETITVNCIVQGNEVVDFSWTYPGKDIGKGIPEVEE-VKVPATTLRSTLTFPHATVEDSGTYECAAHESTQDQKAFKKVN   79 (84)
T ss_pred             CCcEEEEEEEECCCccEEEEEECCccCCCCceEEEE-EecCCcEEEEEEEECCCCcCCCEEEEEEEEECccCcceeEEEE
Confidence            789999999999889999999877643211110000 1111223355899999999999999999998765  4566677


Q ss_pred             EEEe
Q psy7036         101 LNFS  104 (254)
Q Consensus       101 l~v~  104 (254)
                      |+|.
T Consensus        80 i~V~   83 (84)
T cd05861          80 ITVH   83 (84)
T ss_pred             EEEe
Confidence            7664

Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.

>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1

Probab=99.52  E-value=3.6e-13  Score=82.40  Aligned_cols=71  Identities=24%  Similarity=0.506  Sum_probs=54.3

Q ss_pred             CCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCC-CCCceeEEEEEEcCCCcce-EEEEE
Q psy7036         127 GKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVT-IEDAGKYKVTAKNELGESN-ATISL  204 (254)
Q Consensus       127 g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~G~y~C~~~~~~~~~~-~~~~~  204 (254)
                      +..+.|.|.+.|.|.|.+.|+|++..+..... +.... ++     .|.|.++. .+|+|.|.|.|.|..|... ..++|
T Consensus        19 ~~~v~l~C~a~G~P~P~i~W~k~~~~i~~~~~-~~~~~-~g-----~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s~~a~l   91 (93)
T cd05849          19 EGKVSVNCRARANPFPIYKWRKNNLDIDLTND-RYSMV-GG-----NLVINNPDKYKDAGRYVCIVSNIYGKVRSREATL   91 (93)
T ss_pred             CCeEEEeCcCccCCCCEEEEEECCEEccCCCC-eEEEE-CC-----EEEECcCCcCCCCEEEEEEEEeCcceEEEccEEE
Confidence            45799999999999999999999988753322 22222 23     79998885 6899999999999999763 34443

Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs)

Probab=99.52  E-value=1.6e-13  Score=81.00  Aligned_cols=72  Identities=21%  Similarity=0.433  Sum_probs=55.1

Q ss_pred             EEEEEEEee-CCCCceEEEeCCEEeeeCCcceE-EEeecCCcceEEEEEEeccCCCCCeEEEEEEEcCCCceEEEEE
Q psy7036          26 LIFECQLLC-NPKPDIVWFRGETQLSEDTRTVM-KTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASIN  100 (254)
Q Consensus        26 v~l~C~~~~-~~~~~v~W~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~  100 (254)
                      +.|.|.+.| .|.+.+.|+|++..+........ ...   .....+.|.|.+++..|+|.|+|.+.|..|....++.
T Consensus         1 ~~l~C~~~g~~P~p~~~W~k~g~~l~~~~~~~~~~~~---~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~   74 (75)
T cd05750           1 LVLKCEATSEYPSLRFKWFKDGKELNRKNKPRNIKIR---NKKKNSELQINKAKLADSGEYTCVVENILGNDTVTAN   74 (75)
T ss_pred             CEEEEEccCCCCCceEEEEcCCeeccccCCcceEEEE---ecCceEEEEEccCCcccCeEEEEEEEEcCCceeEEEe
Confidence            468999999 89999999999998865543321 111   1122348999999999999999999999998766553

Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv

>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.51  E-value=1.5e-13  Score=80.26  Aligned_cols=70  Identities=36%  Similarity=0.638  Sum_probs=55.5

Q ss_pred             EEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcceEEEEEEE
Q psy7036         130 LLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNF  206 (254)
Q Consensus       130 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~v  206 (254)
                      +.|.|.+.|.|.|.+.|++++..+.... ..  ....+    ..|.|.++..+|.|.|+|.|.|..|....++.|.|
T Consensus         1 v~l~C~~~g~P~p~v~W~k~~~~~~~~~-~~--~~~~~----~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   70 (71)
T cd05731           1 LLLECIAEGLPTPEISWIKIGGELPADR-TK--FENFN----KTLKIDNVSEEDDGEYRCTASNSLGSARHTISVTV   70 (71)
T ss_pred             CEEEEEeeEecCCeEEEEECCeECCCCc-ee--EecCC----CEEEECCCCHHHCEEEEEEEEeCCceEEEEEEEEE
Confidence            4689999999999999999988764321 11  11111    27999999999999999999999998888877765

Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.

>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=99.51  E-value=3.7e-13  Score=82.40  Aligned_cols=82  Identities=15%  Similarity=0.203  Sum_probs=57.3

Q ss_pred             CceeecCCCeEEEEEEEeeCCCCceEEEeCCEEee--------eCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEE
Q psy7036          16 QLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLS--------EDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVK   87 (254)
Q Consensus        16 ~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~   87 (254)
                      ....+.+|+++.|.|.+.+.|.+.+.|++++..+.        ...++.+..  .  ......|.|.+++.+|+|.|+|.
T Consensus         5 ~~~tv~~G~tv~L~C~v~g~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~--~--~~~~~~L~I~nV~~~D~G~YtC~   80 (95)
T cd05882           5 QDETVAVGGTVTLKCGVKEHDNSSLQWSNTAQQTLYFGEKRALRDNRIQLVK--S--TPTELIISISNVQLSDEGEYTCS   80 (95)
T ss_pred             ccEEEecCCcEEEEEEEeCCCCCeEEEeccCccEEEeCCeEEEeCCeEEEEe--C--CCceEEEEECCCCcccCEEEEEE
Confidence            46788999999999999999999999999876431        112222111  1  11234899999999999999999


Q ss_pred             EEcCCCceEEEEEEE
Q psy7036          88 AKNKMGEVAASINLN  102 (254)
Q Consensus        88 ~~~~~~~~~~~~~l~  102 (254)
                      +.... .....+.|.
T Consensus        81 ~~t~~-~~~~~~~~~   94 (95)
T cd05882          81 IFTMP-VRTAKATVT   94 (95)
T ss_pred             EEeec-cccEEEEEE
Confidence            98633 233344443

Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format

>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins

Probab=99.51  E-value=6e-13  Score=81.44  Aligned_cols=82  Identities=27%  Similarity=0.482  Sum_probs=59.2

Q ss_pred             CeeeecCCCeEEEEEEEeeCCCCeEEEEE-CCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCc-
Q psy7036         120 SIRQEDDGKRLLFECRIQADPAPTVIWSH-SGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGE-  197 (254)
Q Consensus       120 ~~~~~~~g~~~~l~C~~~~~~~~~~~W~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~-  197 (254)
                      ....+..|+.+.|.|.+.|.|. .+.|++ ++..+............   ...+.|.|.+++.+|.|.|+|.|.|..|. 
T Consensus         8 ~~~~v~~G~~~~l~C~~~G~p~-~i~W~~~~~~~~~~~~~~~~~~~~---~~~~~L~I~~v~~~D~G~Y~C~A~N~~g~~   83 (92)
T cd04977           8 SQGEISVGESKFFLCQVIGEPK-DISWFSPNGEKLVTQQQISVVQND---DVRSTLTIYNANIEDAGIYKCVATDAKGTE   83 (92)
T ss_pred             CcEEECCCCeEEEEEEeEeeCC-eEEEECCCCCEeccCCCEEEEeCC---CCEEEEEEecCCcccCEEEEEEEEcCCCCc
Confidence            4466888999999999999864 999997 55555433332222211   12348999999999999999999998654 


Q ss_pred             ceEEEEEE
Q psy7036         198 SNATISLN  205 (254)
Q Consensus       198 ~~~~~~~~  205 (254)
                      ...++.|.
T Consensus        84 ~~~sv~l~   91 (92)
T cd04977          84 SEATVNLK   91 (92)
T ss_pred             ceeEEEEE
Confidence            46666554

Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s

>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=99.50  E-value=2.7e-13  Score=82.70  Aligned_cols=80  Identities=23%  Similarity=0.363  Sum_probs=56.2

Q ss_pred             CCeEEEEEEEeeCCCCeEEEEECC----EecccCCcce--EEEc--CCCC-ceeeEEEEccCCCCCceeEEEEEEcCCCc
Q psy7036         127 GKRLLFECRIQADPAPTVIWSHSG----VQVKEDKRHK--FSID--KDGH-SYFASLEIIDVTIEDAGKYKVTAKNELGE  197 (254)
Q Consensus       127 g~~~~l~C~~~~~~~~~~~W~~~~----~~~~~~~~~~--~~~~--~~~~-~~~~~l~i~~~~~~d~G~y~C~~~~~~~~  197 (254)
                      |+.++|.|.+.+.|.|.+.|+|++    ..+.......  ....  .+.. .....|.|.+++.+|+|.|+|.|.|..|.
T Consensus         1 G~~v~l~C~v~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~   80 (90)
T cd04974           1 GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGNSIGP   80 (90)
T ss_pred             CCcEEEEEEEeCCCCCeEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEeecccCc
Confidence            578999999999999999999963    2222111111  1110  0000 01126999999999999999999999999


Q ss_pred             ceEEEEEEE
Q psy7036         198 SNATISLNF  206 (254)
Q Consensus       198 ~~~~~~~~v  206 (254)
                      ...+..|.|
T Consensus        81 ~~~sa~L~V   89 (90)
T cd04974          81 SHHSAWLTV   89 (90)
T ss_pred             ccCCEEEEe
Confidence            888887776

Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.

>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=99.50  E-value=1.8e-13  Score=80.89  Aligned_cols=66  Identities=23%  Similarity=0.486  Sum_probs=49.5

Q ss_pred             EEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCC----CCCeEEEEEEEcCCCceE
Q psy7036          26 LIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIE----TDAGLYKVKAKNKMGEVA   96 (254)
Q Consensus        26 v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~----~d~G~Y~C~~~~~~~~~~   96 (254)
                      ++|.|.+.|.|.|.++|+|++..+.......+......+     .|.|.+++.    .|+|.|+|.|.|..|...
T Consensus         1 i~l~C~~~G~P~P~v~W~k~g~~l~~~~~~~~~~~~~~g-----~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~   70 (77)
T cd05733           1 IVIKCEAKGNPPPTFSWTRNGTHFDPEKDPRVTMKPDSG-----TLVIDNMNGGRAEDYEGEYQCYASNELGTAI   70 (77)
T ss_pred             CEEEeeCcccCCCeEEEEECCeECCCCCCCCEEEeCCCC-----EEEEeccCCCCCcCCCEEEEEEEEcCCCcEE
Confidence            478999999999999999999987543333332222111     688888754    689999999999998754

Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.

>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)

Probab=99.50  E-value=1.2e-12  Score=79.99  Aligned_cols=92  Identities=26%  Similarity=0.420  Sum_probs=69.2

Q ss_pred             CCeeEeCCCceeecCCCeEEEEEEEeeCCCC-ceEEEeCCEEeeeC--CcceEEEeecCCcceEEEEEEeccCCCC-CeE
Q psy7036           8 APSFTQKPQLRQEDEGNRLIFECQLLCNPKP-DIVWFRGETQLSED--TRTVMKTTPIGTNKYLVALELDDVIETD-AGL   83 (254)
Q Consensus         8 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~-~v~W~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~i~~~~~~d-~G~   83 (254)
                      +|.+ .......+.+|+++.|.|.+.+.|.| .+.|..++..+...  .++.+.... ......+.|.|.++...| .|.
T Consensus         2 pP~i-~~~~s~~~~~G~~~~L~C~~~s~P~P~~i~W~w~~~~i~~~~~~r~~I~~~~-~~~g~~S~L~I~~~~~~d~~g~   79 (98)
T cd05898           2 PPII-SSEQVQYAVRGERGKVKCFIGSTPPPDRIAWAWKENVLESGTSERYTVERTS-TGSGVLSTLTINNIMEADFQTH   79 (98)
T ss_pred             CCEE-ecCceEEEeCCCcEEEEEEEccCCCCcEEEEEEccccccCCCCCCEEEEEEc-cCCCcEEEEEECCCccccCCcE
Confidence            6766 55667788999999999999777765 57999888776554  344443322 233456689999998877 799


Q ss_pred             EEEEEEcCCCceEEEEEE
Q psy7036          84 YKVKAKNKMGEVAASINL  101 (254)
Q Consensus        84 Y~C~~~~~~~~~~~~~~l  101 (254)
                      |.|.|.|..|.+...+.|
T Consensus        80 Y~C~a~N~~G~d~~~i~L   97 (98)
T cd05898          80 YNCTAWNSFGSGTAIIQL   97 (98)
T ss_pred             EEEEEEeCCccceEEEEe
Confidence            999999999998776655

Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.

>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1)

Probab=99.50  E-value=4.6e-13  Score=77.16  Aligned_cols=70  Identities=30%  Similarity=0.455  Sum_probs=53.8

Q ss_pred             EEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcceEEEEEEE
Q psy7036         130 LLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNF  206 (254)
Q Consensus       130 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~v  206 (254)
                      +.|.|.+.|.|.|.+.|+|++..+..... ..... +.     +|.|.++..+|+|.|+|.|.|..........+.+
T Consensus         1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~~~-~~~~~-~~-----~L~I~~v~~~D~G~YtC~a~~~~~~~~~~~~i~~   70 (72)
T cd07702           1 YRLTPKVKAFPAPEVIWLKDGLPAAEKCS-RYHVD-GY-----SLVIKDVTEEDAGIYTILLGIKQYNLFKNLTITL   70 (72)
T ss_pred             CeEEeeEEEcCCCeEEEEECCEECCCCCc-EEEeC-CC-----EEEECcCCHHHCEEEEEEEEccccceEeeEEEEE
Confidence            46899999999999999999988765422 22222 22     7999999999999999999998666555555443

Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D

Probab=99.50  E-value=3.2e-13  Score=80.69  Aligned_cols=70  Identities=21%  Similarity=0.274  Sum_probs=55.4

Q ss_pred             CCCceeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcCC
Q psy7036          14 KPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKM   92 (254)
Q Consensus        14 ~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~   92 (254)
                      .|+...+.+|+++.|.|.+. .+.+.+.|++||..+..... ++.. ..+      .|.|.+++.+|+|.|+|.+.+..
T Consensus         2 ~P~~~~v~~G~~v~L~C~~~-~~~~~i~W~~ng~~i~~~~~-r~~~-~~~------~L~I~nv~~~DsG~Y~C~a~e~~   71 (87)
T cd05873           2 DPRQRTFKLGNNAELKCSPK-SNLARVVWKFDGKVLTPESA-KYLL-YRD------GLLIFNASEADAGRYQCLSVEKS   71 (87)
T ss_pred             CcceEEEECCCCEEEEEECC-CCCCeEEEEECCEECCCCCc-eEEE-ECC------cEEEeCCCHHHCEEEEEEEEecc
Confidence            46778899999999999985 46788999999999876532 2222 112      59999999999999999998653

Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas

>PHA02826 IL-1 receptor-like protein; Provisional

Probab=99.50  E-value=5.9e-13  Score=94.72  Aligned_cols=116  Identities=22%  Similarity=0.269  Sum_probs=78.5

Q ss_pred             eeeecCCCeEEEEEEEeeCC-----------CCeEEEEECCEecc--cC-Cc---ceEEEcCCCCceeeEEEEccCCCCC
Q psy7036         121 IRQEDDGKRLLFECRIQADP-----------APTVIWSHSGVQVK--ED-KR---HKFSIDKDGHSYFASLEIIDVTIED  183 (254)
Q Consensus       121 ~~~~~~g~~~~l~C~~~~~~-----------~~~~~W~~~~~~~~--~~-~~---~~~~~~~~~~~~~~~l~i~~~~~~d  183 (254)
                      ...+.+|+.+.|.|.+.+.+           ...+.|+|++....  .. ..   ..+.....+.. ...|.|.+++.+|
T Consensus        31 ~~~v~eGe~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~~s~~~v~~~~~~~~~~~i~~~~~~~r-~~~L~I~~v~~~D  109 (227)
T PHA02826         31 PVYAKFGDPMVLLCTGKHYKKSIFFDKTFITSYNVTWSKTDSLAFVRDSGARTKIKKITHNEIGDR-SENLWIGNVINID  109 (227)
T ss_pred             eEEecCCCCEEEEccccccccccccccccCCCccEEEEeCCeEEEEEcCCCccccccccccceecC-CCeEEECCCChHH
Confidence            45677899999999986643           34799999875421  10 10   00000100000 1279999999999


Q ss_pred             ceeEEEEEEcCCCcceEEEEEEEecCCCCCCCCCCCCeeecCCccccccCCCCcEEEEEEEec-----cCCCceeC
Q psy7036         184 AGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLVG-----EPEPTISW  254 (254)
Q Consensus       184 ~G~y~C~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~l~C~~~~-----~p~p~~~W  254 (254)
                      +|.|+|.|.|..+....++.|.|..          +      +....+.+|+ .+.|.|.+.+     .|.|.++|
T Consensus       110 sG~Y~C~a~N~~~~~~~~i~L~V~~----------~------~~~~~~~~G~-~v~L~C~~~~~~~~~~p~p~I~W  168 (227)
T PHA02826        110 EGIYICTISSGNICEESTIRLTFDS----------G------TINYQFNSGK-DSKLHCYGTDGISSTFKDYTLTW  168 (227)
T ss_pred             CEEEEEEEEECCcceEEEEEEEEec----------C------CccceEecCC-CEEEEeeCCCCccccCCCceEEE
Confidence            9999999999888877777777742          1      1122456788 9999999863     46789999

>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule)

Probab=99.49  E-value=3.4e-13  Score=79.52  Aligned_cols=67  Identities=21%  Similarity=0.462  Sum_probs=48.6

Q ss_pred             EEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCC----CCCeEEEEEEEcCCCceEE
Q psy7036          26 LIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIE----TDAGLYKVKAKNKMGEVAA   97 (254)
Q Consensus        26 v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~----~d~G~Y~C~~~~~~~~~~~   97 (254)
                      +.|.|.+.|.|.|.++|+|++..+..............+     +|.|..+..    .|.|.|+|.|.|..|...+
T Consensus         1 ~~l~C~a~G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~g-----~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s   71 (77)
T cd05874           1 IVIQCEAKGKPPPSFSWTRNGTHFDIDKDPKVTMKPNTG-----TLVINIMNGEKAEAYEGVYQCTARNERGAAVS   71 (77)
T ss_pred             CEEEeeCcccCCCeEEEEECCeECCCcCCCCEEEeCCCc-----eEEEeccccCCCCCCCEEEEEEEEcCCCeEEe
Confidence            478999999999999999999987433332232222111     677777664    3789999999999987544

Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin

Probab=99.49  E-value=4e-13  Score=81.94  Aligned_cols=83  Identities=22%  Similarity=0.342  Sum_probs=61.5

Q ss_pred             CCCceeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCc--ceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcC
Q psy7036          14 KPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTR--TVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNK   91 (254)
Q Consensus        14 ~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~   91 (254)
                      .|..+.+.+|+++.|.|.+.+ |.+.+.|++++..+.....  .+....  ..     .|.|.+++.+|+|.|.|.+.+.
T Consensus         2 ~~~~~~v~~g~~v~L~C~~~~-p~~~i~W~k~~~~~~~~~~~~~~~~~~--~~-----~L~I~~~~~~D~G~Y~C~a~~~   73 (89)
T cd04979           2 EEKVVTVVEGNSVFLECSPKS-NLASVVWLFQGGPLQRKEEPEERLLVT--ED-----GLLIRSVSPADAGVYTCQSVEH   73 (89)
T ss_pred             cceEEEEECCCcEEEEEeCCC-CCceEEEEECCcccccccCcCceEEEc--CC-----CEEEccCCHHHCEEEEEEEecC
Confidence            355677899999999999976 7789999999987654321  122211  11     5899999999999999999865


Q ss_pred             C-CceEEEEEEEEe
Q psy7036          92 M-GEVAASINLNFS  104 (254)
Q Consensus        92 ~-~~~~~~~~l~v~  104 (254)
                      . +....+..|.|.
T Consensus        74 ~~~~~~~~~~l~V~   87 (89)
T cd04979          74 GFKQTLATYSLNVL   87 (89)
T ss_pred             ccceeEeEEEEEEe
Confidence            4 445667777764

Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.

>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

Probab=99.48  E-value=1.1e-12  Score=79.56  Aligned_cols=82  Identities=22%  Similarity=0.450  Sum_probs=63.1

Q ss_pred             eeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcCCCceEE
Q psy7036          18 RQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAA   97 (254)
Q Consensus        18 ~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~   97 (254)
                      ..+.+|+++.|.|.+.+.|.+.+.|++++..+..........    .......|.|.++..+|+|.|.|.+.|..|....
T Consensus         4 ~~~~~G~~~~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~----~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~~~~   79 (85)
T cd05729           4 HAVPAGSTVRLKCPASGNPRPTITWLKDGKPFKKEHRIGGYK----VRKKKWTLILESVVPSDSGKYTCIVENKYGSINH   79 (85)
T ss_pred             eEecCCCcEEEEEEcCCCCCCeEEEEECCEECcccCceeEEE----ccCcEEEEEEeECCcccCEEEEEEEEECCceEEE
Confidence            356789999999999988999999999998776443222111    1112337999999999999999999999988777


Q ss_pred             EEEEEE
Q psy7036          98 SINLNF  103 (254)
Q Consensus        98 ~~~l~v  103 (254)
                      ++.|.|
T Consensus        80 ~~~l~v   85 (85)
T cd05729          80 TYKVDV   85 (85)
T ss_pred             EEEEeC
Confidence            777653

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin

>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=99.48  E-value=6.2e-13  Score=81.70  Aligned_cols=83  Identities=18%  Similarity=0.202  Sum_probs=57.4

Q ss_pred             CCceeecCCCeEEEEEEEeeCCCCceEEEeCCEE--------eeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEE
Q psy7036          15 PQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQ--------LSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKV   86 (254)
Q Consensus        15 ~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C   86 (254)
                      ++.+.+.+|++++|.|.+.+.|.+.+.||+.+..        .....++.....    .....+|.|.+++.+|+|.|.|
T Consensus         4 ~~~v~v~eG~~v~L~C~~~~~p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~----~~~~~sL~I~~v~~~DsG~Y~C   79 (95)
T cd07701           4 TQNVTVVEGGTANLTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRA----SWHELSISISDVSLSDEGQYTC   79 (95)
T ss_pred             cceEEEecCCcEEEEEEEecCCceEEEEeCCCCeEEEEcCcccccCCCEEEEEC----CCCcEEEEECcCCcccCEEEEE
Confidence            4567899999999999999999999999864321        112223322111    1122379999999999999999


Q ss_pred             EEEcCCCceEEEEEEE
Q psy7036          87 KAKNKMGEVAASINLN  102 (254)
Q Consensus        87 ~~~~~~~~~~~~~~l~  102 (254)
                      .+.+..+ ......|.
T Consensus        80 ~~~t~~~-~~~~~~l~   94 (95)
T cd07701          80 SLFTMPV-KTSKAYLT   94 (95)
T ss_pred             EeEeecC-ccEEEEEE
Confidence            9987433 34455554

Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.

>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins

Probab=99.48  E-value=3.3e-13  Score=81.58  Aligned_cols=79  Identities=23%  Similarity=0.371  Sum_probs=62.0

Q ss_pred             EeCCCceeecCCCeEEEEEEEee-CCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEc
Q psy7036          12 TQKPQLRQEDEGNRLIFECQLLC-NPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKN   90 (254)
Q Consensus        12 ~~~~~~~~v~~g~~v~l~C~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~   90 (254)
                      ...|....+.+|++++|.|.+.+ .|.+.+.|++++..+....      ...     ...|.|.+++.+|+|.|.|.+.|
T Consensus         5 ~~~p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~~~------~~~-----~~~L~I~~v~~~DsG~Y~C~a~n   73 (85)
T cd05754           5 VEEPRSQEVRPGADVSFICRAKSKSPAYTLVWTRVGGGLPSRA------MDF-----NGILTIRNVQLSDAGTYVCTGSN   73 (85)
T ss_pred             ecCCCceEEcCCCCEEEEEEcCCCCCCcEEEEEECCCcCCCcc------ccc-----CCEEEECCCCHHHCEEEEEEEec
Confidence            35667778999999999999964 6788999999886543211      001     12799999999999999999999


Q ss_pred             CCCceEEEEEE
Q psy7036          91 KMGEVAASINL  101 (254)
Q Consensus        91 ~~~~~~~~~~l  101 (254)
                      ..|.....+.|
T Consensus        74 ~~g~~~~~~~l   84 (85)
T cd05754          74 MLDTDEATATL   84 (85)
T ss_pred             cCCeEeEEEEE
Confidence            99887776654

Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.

>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=99.47  E-value=3.8e-13  Score=80.47  Aligned_cols=66  Identities=17%  Similarity=0.227  Sum_probs=52.3

Q ss_pred             CceeecCCCeEEEEEEEee-CCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcCCCc
Q psy7036          16 QLRQEDEGNRLIFECQLLC-NPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGE   94 (254)
Q Consensus        16 ~~~~v~~g~~v~l~C~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~   94 (254)
                      ....+.+|++++|+|.+.+ .+...+.|||+|..+....             ....|.|.+++.+|+|.|+|.+.+..+.
T Consensus         7 p~~~V~~G~~vtL~C~~~~~~~~~~~~w~k~g~~~~~~~-------------~~~~l~I~~~~~~dsG~Y~C~~~~~~~~   73 (83)
T cd05753           7 PSRVVFEGEPLVLRCHGWKNKPVYKVTYYRDGKAKKYSH-------------SNSNLSIPQATLSDSGSYHCSGIIGSYD   73 (83)
T ss_pred             CcceecCCCCEEEEeeCCCCCcceEEEEEECCeEccccC-------------CCceEEECccCHHHCEEEEEEEEeCCce
Confidence            3457899999999999853 5667899999997653211             0127999999999999999999988864

Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs)

Probab=99.47  E-value=1.1e-12  Score=77.76  Aligned_cols=70  Identities=16%  Similarity=0.387  Sum_probs=55.0

Q ss_pred             CCCeeeecCCCeEEEEEEEeeCCCC-eEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCC
Q psy7036         118 KPSIRQEDDGKRLLFECRIQADPAP-TVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELG  196 (254)
Q Consensus       118 ~~~~~~~~~g~~~~l~C~~~~~~~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~  196 (254)
                      .+..+.+..|+.+.|.|.+.|.|.| .+.|+|++..+.....    . ..     +.|.|..+  .|.|.|.|.|.|..|
T Consensus         4 ~P~~~~v~~G~~v~l~C~a~G~P~P~~I~W~k~g~~l~~~~~----~-~~-----s~L~i~~~--~d~g~Y~C~A~N~~G   71 (81)
T cd05749           4 EPEDLSVTANTPFNLTCQAVGPPEPVEILWWQGGSPLGDPPA----P-SP-----SVLNVPGL--NETSKFSCEAHNAKG   71 (81)
T ss_pred             CCCceEEcCCCCEEEEEEeeeecCCeEEEEEECCEECCCCCC----C-CC-----CEEEEccc--cCCeEEEEEEEeccC
Confidence            3456778899999999999999999 7999999998753110    1 11     27888876  478999999999999


Q ss_pred             cce
Q psy7036         197 ESN  199 (254)
Q Consensus       197 ~~~  199 (254)
                      ...
T Consensus        72 ~~~   74 (81)
T cd05749          72 VTT   74 (81)
T ss_pred             cEE
Confidence            654

Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c

>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=99.47  E-value=4.9e-13  Score=81.86  Aligned_cols=80  Identities=19%  Similarity=0.323  Sum_probs=61.4

Q ss_pred             eeeecCCCeEEEEEEEee-----CCCCeEEEEECCEecccC--CcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEc
Q psy7036         121 IRQEDDGKRLLFECRIQA-----DPAPTVIWSHSGVQVKED--KRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKN  193 (254)
Q Consensus       121 ~~~~~~g~~~~l~C~~~~-----~~~~~~~W~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~  193 (254)
                      ...+.+|+.+.|.|.+.+     .|.+.+.|+|++..+...  ...++... ++     .|.|.++..+|+|.|.|.+.|
T Consensus         8 ~~~v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~~~~~~~~~~~~~r~~~~-~~-----~L~I~~~~~~DsG~Y~C~~~N   81 (94)
T cd05756           8 KSYVLEGEPVVIKCPLFYSYIAQSPGLNLTWYKSDGKTPIPTEERSRMHQQ-KD-----LLWFLPAALEDSGLYTCVVRN   81 (94)
T ss_pred             EEEEecCCCeEEECCCCCcccccCCCceEEEEEcCCCCcccccccceeeec-CC-----eEEEccCCcccCeEEEEEEcC
Confidence            345668999999999888     678899999998664322  12223222 22     799999999999999999999


Q ss_pred             CCCcceEEEEEEE
Q psy7036         194 ELGESNATISLNF  206 (254)
Q Consensus       194 ~~~~~~~~~~~~v  206 (254)
                      ..|.....+.|.|
T Consensus        82 ~~g~~~~~~~L~v   94 (94)
T cd05756          82 STYCMKVSISLTV   94 (94)
T ss_pred             CCccEEEEEEEEC
Confidence            9998888877654

Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.46  E-value=9.5e-13  Score=78.93  Aligned_cols=75  Identities=24%  Similarity=0.421  Sum_probs=55.4

Q ss_pred             CCeEEEEEEEeeCCCCeEEEEECCEe---cccCC-c--ceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcceE
Q psy7036         127 GKRLLFECRIQADPAPTVIWSHSGVQ---VKEDK-R--HKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNA  200 (254)
Q Consensus       127 g~~~~l~C~~~~~~~~~~~W~~~~~~---~~~~~-~--~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~  200 (254)
                      |+.+.|.|.+.+.|.|.+.|+|++..   +.... .  ..+.....     ..|.|.++..+|+|.|.|.+.|..|....
T Consensus         1 G~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~-----~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~   75 (81)
T cd05765           1 GETASFHCDVTGRPPPEITWEKQVHGKENLIMRPNHVRGNVVVTNI-----GQLVIYNAQPQDAGLYTCTARNSGGLLRA   75 (81)
T ss_pred             CCcEEEEeeccccCCCcEEEEecCCCCcceeecCCcccCCEEEccc-----cEEEEccCCcccCEEEEEEEecCCceEEE
Confidence            67899999999999999999997421   11011 0  01111111     37999999999999999999999999888


Q ss_pred             EEEEEE
Q psy7036         201 TISLNF  206 (254)
Q Consensus       201 ~~~~~v  206 (254)
                      .+.|.|
T Consensus        76 ~~~l~v   81 (81)
T cd05765          76 NFPLSV   81 (81)
T ss_pred             EEEEeC
Confidence            877754

Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins

Probab=99.46  E-value=1.1e-12  Score=79.05  Aligned_cols=80  Identities=18%  Similarity=0.355  Sum_probs=58.8

Q ss_pred             CCeEEEEEEEeeC--CCCeEEEEECCEecccCCcce-EEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcceEEEE
Q psy7036         127 GKRLLFECRIQAD--PAPTVIWSHSGVQVKEDKRHK-FSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATIS  203 (254)
Q Consensus       127 g~~~~l~C~~~~~--~~~~~~W~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~  203 (254)
                      |+.+.|.|.+.+.  |.+.+.|++++..+....... .....+.....+.|.|.+++.+|+|.|+|.|.|..+....+..
T Consensus         1 Ge~~~L~C~~~g~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~~s~~   80 (84)
T cd05742           1 GETLVLNCTVLTELNEGVDFQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNATLKDSGTYTCAASSGTMDQKESTK   80 (84)
T ss_pred             CCeEEEEEEEEeCCCccEEEEEecCCcccCCceEeecccccccceEEEEEEEECCCChhhCEEEEEEEccCCCceEEEEE
Confidence            6789999999998  788999998776543221100 0011112234468999999999999999999999998888877


Q ss_pred             EEE
Q psy7036         204 LNF  206 (254)
Q Consensus       204 ~~v  206 (254)
                      |.|
T Consensus        81 v~v   83 (84)
T cd05742          81 VNI   83 (84)
T ss_pred             EEE
Confidence            765

Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF

>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF)

Probab=99.46  E-value=8.7e-13  Score=77.76  Aligned_cols=67  Identities=24%  Similarity=0.365  Sum_probs=47.9

Q ss_pred             EEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccC----CCCCeEEEEEEEcCCCceEE
Q psy7036          26 LIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVI----ETDAGLYKVKAKNKMGEVAA   97 (254)
Q Consensus        26 v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~----~~d~G~Y~C~~~~~~~~~~~   97 (254)
                      +.|.|.+.|.|.|.++|+|++..+.......+.....+     ..|.|.++.    .+|+|.|+|.|.|..|...+
T Consensus         1 ~~l~C~~~G~P~P~v~W~k~g~~~~~~~~~~~~~~~~~-----~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s   71 (77)
T cd05875           1 IIIECEAKGNPVPTFQWTRNGKFFNVAKDPRVSMRRRS-----GTLVIDFSGGGRPEDYEGEYQCFARNNLGTALS   71 (77)
T ss_pred             CEEEEeccccCCCEEEEEECCEEccCcCCCcEEEeCCC-----ceEEEeccCCCCCCCCCEEEEEEEEeccceEEE
Confidence            46899999999999999999987643222222221111     168888764    24699999999999997543

Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.

>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs)

Probab=99.45  E-value=8.3e-13  Score=77.94  Aligned_cols=72  Identities=21%  Similarity=0.455  Sum_probs=54.7

Q ss_pred             EEEEEEEee-CCCCeEEEEECCEecccCCcceE-EEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcceEEEE
Q psy7036         130 LLFECRIQA-DPAPTVIWSHSGVQVKEDKRHKF-SIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATIS  203 (254)
Q Consensus       130 ~~l~C~~~~-~~~~~~~W~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~  203 (254)
                      +.|.|.+.+ .|.+.+.|+|++..+........ .....  ...+.|.|.++..+|.|.|+|.|.|..|....++.
T Consensus         1 ~~l~C~~~g~~P~p~~~W~k~g~~l~~~~~~~~~~~~~~--~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~   74 (75)
T cd05750           1 LVLKCEATSEYPSLRFKWFKDGKELNRKNKPRNIKIRNK--KKNSELQINKAKLADSGEYTCVVENILGNDTVTAN   74 (75)
T ss_pred             CEEEEEccCCCCCceEEEEcCCeeccccCCcceEEEEec--CceEEEEEccCCcccCeEEEEEEEEcCCceeEEEe
Confidence            368999999 89999999999988865443221 11111  11248999999999999999999999998776654

Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv

>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=99.45  E-value=8.1e-13  Score=78.64  Aligned_cols=71  Identities=24%  Similarity=0.400  Sum_probs=49.9

Q ss_pred             EEEEEEEeeCCCCceEEEeCCEEeeeC------CcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcCCCce-EEE
Q psy7036          26 LIFECQLLCNPKPDIVWFRGETQLSED------TRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGEV-AAS   98 (254)
Q Consensus        26 v~l~C~~~~~~~~~v~W~~~~~~~~~~------~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~-~~~   98 (254)
                      |+|.|.+.|.|.|.+.|++++......      ...++.....      .+|.|.++..+|+|.|.|.+.|..|.. ...
T Consensus         1 v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~------~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~~   74 (79)
T cd05734           1 VTLNCSAEGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQLLSN------GSLLIKHVLEEDSGYYLCKVSNDVGADASKS   74 (79)
T ss_pred             CEeEeeCeEeCCCEEEEEECCCccccccccccccCCCEEEecC------CeEEECcCCcccCEEEEEEEEeCCCCCCceE
Confidence            579999999999999999975422110      1111211111      279999999999999999999999875 444


Q ss_pred             EEEE
Q psy7036          99 INLN  102 (254)
Q Consensus        99 ~~l~  102 (254)
                      +.|.
T Consensus        75 ~~l~   78 (79)
T cd05734          75 MVLT   78 (79)
T ss_pred             EEEe
Confidence            4444

Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=99.45  E-value=9.8e-13  Score=77.74  Aligned_cols=65  Identities=26%  Similarity=0.612  Sum_probs=49.6

Q ss_pred             EEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcC-CCCceeeEEEEccCCC----CCceeEEEEEEcCCCcce
Q psy7036         130 LLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDK-DGHSYFASLEIIDVTI----EDAGKYKVTAKNELGESN  199 (254)
Q Consensus       130 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~i~~~~~----~d~G~y~C~~~~~~~~~~  199 (254)
                      +.|.|.+.|.|.|.+.|+|++..+.......+.... ++     .|.|.++..    +|.|.|.|.|.|..|...
T Consensus         1 i~l~C~~~G~P~P~v~W~k~g~~l~~~~~~~~~~~~~~g-----~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~   70 (77)
T cd05733           1 IVIKCEAKGNPPPTFSWTRNGTHFDPEKDPRVTMKPDSG-----TLVIDNMNGGRAEDYEGEYQCYASNELGTAI   70 (77)
T ss_pred             CEEEeeCcccCCCeEEEEECCeECCCCCCCCEEEeCCCC-----EEEEeccCCCCCcCCCEEEEEEEEcCCCcEE
Confidence            468999999999999999999887543333333322 33     788887753    689999999999999753

Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.

>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b)

Probab=99.45  E-value=4.6e-12  Score=76.09  Aligned_cols=80  Identities=15%  Similarity=0.348  Sum_probs=55.8

Q ss_pred             CCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCC--cceEEEEE
Q psy7036         127 GKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELG--ESNATISL  204 (254)
Q Consensus       127 g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~--~~~~~~~~  204 (254)
                      |+.+.|.|.+.+.|.+.+.|++.++..............+.....+.|.|.+++.+|+|.|.|.+.|..+  ...+++.|
T Consensus         1 Ge~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~sv~i   80 (84)
T cd05861           1 GETITVNCIVQGNEVVDFSWTYPGKDIGKGIPEVEEVKVPATTLRSTLTFPHATVEDSGTYECAAHESTQDQKAFKKVNI   80 (84)
T ss_pred             CCcEEEEEEEECCCccEEEEEECCccCCCCceEEEEEecCCcEEEEEEEECCCCcCCCEEEEEEEEECccCcceeEEEEE
Confidence            6889999999999999999998775432111110011111222345899999999999999999999776  44566666


Q ss_pred             EE
Q psy7036         205 NF  206 (254)
Q Consensus       205 ~v  206 (254)
                      .|
T Consensus        81 ~V   82 (84)
T cd05861          81 TV   82 (84)
T ss_pred             EE
Confidence            55

Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.

>cd04967 Ig1_Contactin First Ig domain of contactin

Probab=99.44  E-value=3.2e-12  Score=78.29  Aligned_cols=68  Identities=28%  Similarity=0.606  Sum_probs=52.8

Q ss_pred             CCCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCC-CCCceeEEEEEEcCCCcce
Q psy7036         126 DGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVT-IEDAGKYKVTAKNELGESN  199 (254)
Q Consensus       126 ~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~G~y~C~~~~~~~~~~  199 (254)
                      .|..+.|.|.+.+.|.+.+.|++++..+.......+.... +     .|.|.++. .+|.|.|+|.|.|..|...
T Consensus        18 ~~~~~~l~C~~~g~p~p~i~W~k~~~~l~~~~~~~~~~~~-~-----~L~i~~~~~~~d~G~Y~C~a~N~~G~~~   86 (91)
T cd04967          18 DEGKVSLNCRARGSPPPTYRWLMNGTEIDDEPDSRYSLVG-G-----NLVISNPSKAKDAGRYQCLASNIVGTVL   86 (91)
T ss_pred             CCCEEEEEEeeeEcCCCEEEEEECCEECCCCCCCCEEEEC-C-----EEEEecCCccCCCEEEEEEEEcCCCEEE
Confidence            3467999999999999999999999887543333333322 2     68888876 4899999999999998653

Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata

>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF)

Probab=99.44  E-value=2.2e-12  Score=76.04  Aligned_cols=66  Identities=27%  Similarity=0.543  Sum_probs=48.7

Q ss_pred             EEEEEEEeeCCCCeEEEEECCEecccCCcceEEEc-CCCCceeeEEEEccCC----CCCceeEEEEEEcCCCcceE
Q psy7036         130 LLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSID-KDGHSYFASLEIIDVT----IEDAGKYKVTAKNELGESNA  200 (254)
Q Consensus       130 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~i~~~~----~~d~G~y~C~~~~~~~~~~~  200 (254)
                      +.|.|.+.|.|.|.+.|+|++..+......++... .++     .|.|..+.    .+|+|.|.|.|.|..|....
T Consensus         1 ~~l~C~~~G~P~P~v~W~k~g~~~~~~~~~~~~~~~~~~-----~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s   71 (77)
T cd05875           1 IIIECEAKGNPVPTFQWTRNGKFFNVAKDPRVSMRRRSG-----TLVIDFSGGGRPEDYEGEYQCFARNNLGTALS   71 (77)
T ss_pred             CEEEEeccccCCCEEEEEECCEEccCcCCCcEEEeCCCc-----eEEEeccCCCCCCCCCEEEEEEEEeccceEEE
Confidence            46899999999999999999987643333333332 233     68888753    24699999999999997643

Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.

>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule)

Probab=99.44  E-value=2e-12  Score=76.18  Aligned_cols=66  Identities=27%  Similarity=0.550  Sum_probs=48.9

Q ss_pred             EEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcC-CCCceeeEEEEccCCC----CCceeEEEEEEcCCCcceE
Q psy7036         130 LLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDK-DGHSYFASLEIIDVTI----EDAGKYKVTAKNELGESNA  200 (254)
Q Consensus       130 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~i~~~~~----~d~G~y~C~~~~~~~~~~~  200 (254)
                      +.|.|.+.|.|.|.+.|+|++..+............ ++     .|.|..+..    .|.|.|+|.|.|..|....
T Consensus         1 ~~l~C~a~G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~g-----~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s   71 (77)
T cd05874           1 IVIQCEAKGKPPPSFSWTRNGTHFDIDKDPKVTMKPNTG-----TLVINIMNGEKAEAYEGVYQCTARNERGAAVS   71 (77)
T ss_pred             CEEEeeCcccCCCeEEEEECCeECCCcCCCCEEEeCCCc-----eEEEeccccCCCCCCCEEEEEEEEcCCCeEEe
Confidence            478999999999999999999887433333333322 33     677776654    3789999999999997644

Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1

Probab=99.43  E-value=1.3e-12  Score=77.11  Aligned_cols=72  Identities=21%  Similarity=0.456  Sum_probs=52.2

Q ss_pred             EEEEEEEee-CCCCceEEEeCCEEeeeCC--cceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcCCCceEEEEE
Q psy7036          26 LIFECQLLC-NPKPDIVWFRGETQLSEDT--RTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASIN  100 (254)
Q Consensus        26 v~l~C~~~~-~~~~~v~W~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~  100 (254)
                      +.|+|.+.+ .|.+.++||++|..+....  ..++....   ......|.|.++..+|+|.|+|.+.|..|....++.
T Consensus         1 ~~L~C~a~~~~p~~~~~W~~~g~~i~~~~~~~~~~~~~~---~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~~~~~   75 (76)
T cd05895           1 LVLRCETVSEYPSLRFKWFKNGKEIGAKNKPDNKIKIRK---KKKSSELQISKASLADNGEYKCMVSSKLGNDSVTAN   75 (76)
T ss_pred             CEEEEecccCCCCCceEEEECCcccccCCCCCceEEEEe---CCcEEEEEECcCCcccCEEEEEEEEeCCCceeEEEe
Confidence            478999864 6788999999998875432  11122111   112237999999999999999999999988766553

Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process

>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=99.43  E-value=1.2e-12  Score=77.14  Aligned_cols=63  Identities=19%  Similarity=0.408  Sum_probs=50.4

Q ss_pred             cCCCeeeecCCCeEEEEEEEeeCCC-CeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcC
Q psy7036         117 KKPSIRQEDDGKRLLFECRIQADPA-PTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNE  194 (254)
Q Consensus       117 ~~~~~~~~~~g~~~~l~C~~~~~~~-~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~  194 (254)
                      ..+....+.+|+.++|.|.+.+.|. ..+.|+|++..+...         .+     .|.|.++ .+|+|.|+|.|.|.
T Consensus         5 ~~P~~~~v~~G~~V~L~C~~~~~p~~~~~~W~kng~~l~~~---------~~-----~l~i~~~-~~dsG~Y~C~a~~~   68 (78)
T cd05752           5 LDPPWTTIFQGEKVTLTCNGFNSPEQNSTQWYHNGKLLETT---------TN-----SYRIRAA-NNDSGEYRCQTQGS   68 (78)
T ss_pred             eCCCCeEeeCCCCEEEEEeCCCCCCCccEEEEECCEEeecc---------CC-----eEEEeec-ccCCEEeEEECCCC
Confidence            3445567889999999999988775 469999999876321         11     6899999 99999999999875

Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=99.43  E-value=2e-12  Score=76.94  Aligned_cols=71  Identities=27%  Similarity=0.521  Sum_probs=51.0

Q ss_pred             EEEEEEEeeCCCCeEEEEECCEecccC------CcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcc-eEEE
Q psy7036         130 LLFECRIQADPAPTVIWSHSGVQVKED------KRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGES-NATI  202 (254)
Q Consensus       130 ~~l~C~~~~~~~~~~~W~~~~~~~~~~------~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~-~~~~  202 (254)
                      ++|.|.+.|+|.|.+.|++++......      ...++....++     +|.|.++..+|.|.|.|.|.|..|.. +..+
T Consensus         1 v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~-----~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~~~   75 (79)
T cd05734           1 VTLNCSAEGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQLLSNG-----SLLIKHVLEEDSGYYLCKVSNDVGADASKSM   75 (79)
T ss_pred             CEeEeeCeEeCCCEEEEEECCCccccccccccccCCCEEEecCC-----eEEECcCCcccCEEEEEEEEeCCCCCCceEE
Confidence            478999999999999999964321110      11222222333     79999999999999999999999976 4555


Q ss_pred             EEE
Q psy7036         203 SLN  205 (254)
Q Consensus       203 ~~~  205 (254)
                      .|.
T Consensus        76 ~l~   78 (79)
T cd05734          76 VLT   78 (79)
T ss_pred             EEe
Confidence            544

Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR)

Probab=99.41  E-value=1.4e-11  Score=74.73  Aligned_cols=88  Identities=15%  Similarity=0.265  Sum_probs=72.3

Q ss_pred             CeeeecCCCeEEEEEEEeeCCCCe-EEEEECCEecccCCcceEEEcC-CCCceeeEEEEccCCCCCceeEEEEEEcCCCc
Q psy7036         120 SIRQEDDGKRLLFECRIQADPAPT-VIWSHSGVQVKEDKRHKFSIDK-DGHSYFASLEIIDVTIEDAGKYKVTAKNELGE  197 (254)
Q Consensus       120 ~~~~~~~g~~~~l~C~~~~~~~~~-~~W~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~  197 (254)
                      ..+.+..|+.+.|.|.+..+|+|. +.|.+++..+.......+.... ...+|.+.|.|.+++.++.|.|+|.|.|...+
T Consensus        11 ~~~~v~~gE~~~L~V~ieAYP~p~~~~W~~~~~~l~~~~~~~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~~~   90 (101)
T cd05860          11 TTIFVNAGENLDLIVEYEAYPKPEHQQWIYMNRTLTNTSDHYVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNSDAS   90 (101)
T ss_pred             ceEEEECCCCEEEEEEEEeCCCCeeeEEEcCCcccCccccceeEEeccCceEEEEEEEEeecChhhCcEEEEEEECCCCe
Confidence            456788999999999999999998 9999988776544442333332 33578899999999999999999999999999


Q ss_pred             ceEEEEEEEe
Q psy7036         198 SNATISLNFD  207 (254)
Q Consensus       198 ~~~~~~~~v~  207 (254)
                      ...++.|.|+
T Consensus        91 ~s~tF~l~v~  100 (101)
T cd05860          91 ASVTFNVYVN  100 (101)
T ss_pred             EEEEEEEEEe
Confidence            9999888775

Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.

>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)

Probab=99.41  E-value=1.1e-11  Score=75.82  Aligned_cols=88  Identities=23%  Similarity=0.403  Sum_probs=65.8

Q ss_pred             cCCCeeeecCCCeEEEEEEEeeCCCC-eEEEEECCEecccCC--cceEEEcCCCCceeeEEEEccCCCCC-ceeEEEEEE
Q psy7036         117 KKPSIRQEDDGKRLLFECRIQADPAP-TVIWSHSGVQVKEDK--RHKFSIDKDGHSYFASLEIIDVTIED-AGKYKVTAK  192 (254)
Q Consensus       117 ~~~~~~~~~~g~~~~l~C~~~~~~~~-~~~W~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~i~~~~~~d-~G~y~C~~~  192 (254)
                      .......+..|+.+.|.|.+.+.|+| .+.|.+++..+....  +..+..........+.|.|.++...| .|.|.|.|.
T Consensus         6 ~~~~s~~~~~G~~~~L~C~~~s~P~P~~i~W~w~~~~i~~~~~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~Y~C~a~   85 (98)
T cd05898           6 SSEQVQYAVRGERGKVKCFIGSTPPPDRIAWAWKENVLESGTSERYTVERTSTGSGVLSTLTINNIMEADFQTHYNCTAW   85 (98)
T ss_pred             ecCceEEEeCCCcEEEEEEEccCCCCcEEEEEEccccccCCCCCCEEEEEEccCCCcEEEEEECCCccccCCcEEEEEEE
Confidence            44456678899999999999888876 589998887765443  23333222333445799999998766 799999999


Q ss_pred             cCCCcceEEEEE
Q psy7036         193 NELGESNATISL  204 (254)
Q Consensus       193 ~~~~~~~~~~~~  204 (254)
                      |.+|.....++|
T Consensus        86 N~~G~d~~~i~L   97 (98)
T cd05898          86 NSFGSGTAIIQL   97 (98)
T ss_pred             eCCccceEEEEe
Confidence            999999887765

Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.

>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR)

Probab=99.41  E-value=1.2e-11  Score=75.07  Aligned_cols=89  Identities=19%  Similarity=0.327  Sum_probs=71.9

Q ss_pred             CceeecCCCeEEEEEEEeeCCCCc-eEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcCCCc
Q psy7036          16 QLRQEDEGNRLIFECQLLCNPKPD-IVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGE   94 (254)
Q Consensus        16 ~~~~v~~g~~v~l~C~~~~~~~~~-v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~   94 (254)
                      ....|.+|+++.|.|.+...|.|. +.|.+++..+.............+...+.+.|.+.+++..|.|.|+|.+.|....
T Consensus        11 ~~~~v~~gE~~~L~V~ieAYP~p~~~~W~~~~~~l~~~~~~~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~~~   90 (101)
T cd05860          11 TTIFVNAGENLDLIVEYEAYPKPEHQQWIYMNRTLTNTSDHYVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNSDAS   90 (101)
T ss_pred             ceEEEECCCCEEEEEEEEeCCCCeeeEEEcCCcccCccccceeEEeccCceEEEEEEEEeecChhhCcEEEEEEECCCCe
Confidence            456789999999999999999997 9999998876544332233333345568889999999999999999999999988


Q ss_pred             eEEEEEEEEe
Q psy7036          95 VAASINLNFS  104 (254)
Q Consensus        95 ~~~~~~l~v~  104 (254)
                      ...++.|.|.
T Consensus        91 ~s~tF~l~v~  100 (101)
T cd05860          91 ASVTFNVYVN  100 (101)
T ss_pred             EEEEEEEEEe
Confidence            8888887763

Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.

>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=99.40  E-value=3e-12  Score=77.85  Aligned_cols=73  Identities=22%  Similarity=0.298  Sum_probs=55.9

Q ss_pred             eeecCCCeEEEEEEEee-----CCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcCC
Q psy7036          18 RQEDEGNRLIFECQLLC-----NPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKM   92 (254)
Q Consensus        18 ~~v~~g~~v~l~C~~~~-----~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~   92 (254)
                      ..+.+|+++.|.|...+     .|.+.+.|||++.++...... ..   .+.     .|.|.+++.+|+|.|+|.+.+..
T Consensus         5 ~~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~~~~~-~~---~~~-----~L~I~~v~~~DsG~YtC~~~n~~   75 (92)
T cd05757           5 QILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEGDRKR-FV---KGS-----KLLIQNVTEEDAGNYTCKLTFTH   75 (92)
T ss_pred             EEEeeccCCEEECCChHHccCCCCCCcEEEeECCEECCCCccE-Ee---cCC-----EEEEeeCChhhCEEEEEEEEecC
Confidence            46789999999999743     257899999999988754432 21   111     79999999999999999999887


Q ss_pred             CceEEEE
Q psy7036          93 GEVAASI   99 (254)
Q Consensus        93 ~~~~~~~   99 (254)
                      +.....+
T Consensus        76 ~~~~~~~   82 (92)
T cd05757          76 NGKQYNV   82 (92)
T ss_pred             CCEEEEE
Confidence            7644433

Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1

>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1

Probab=99.40  E-value=2.5e-12  Score=75.95  Aligned_cols=72  Identities=24%  Similarity=0.485  Sum_probs=52.1

Q ss_pred             EEEEEEEee-CCCCeEEEEECCEecccCC--cceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcceEEEE
Q psy7036         130 LLFECRIQA-DPAPTVIWSHSGVQVKEDK--RHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATIS  203 (254)
Q Consensus       130 ~~l~C~~~~-~~~~~~~W~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~  203 (254)
                      +.|.|.+.+ .|.+.+.|++++..+....  ..++......  ..+.|.|.++..+|+|.|+|.+.|..|....++.
T Consensus         1 ~~L~C~a~~~~p~~~~~W~~~g~~i~~~~~~~~~~~~~~~~--~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~~~~~   75 (76)
T cd05895           1 LVLRCETVSEYPSLRFKWFKNGKEIGAKNKPDNKIKIRKKK--KSSELQISKASLADNGEYKCMVSSKLGNDSVTAN   75 (76)
T ss_pred             CEEEEecccCCCCCceEEEECCcccccCCCCCceEEEEeCC--cEEEEEECcCCcccCEEEEEEEEeCCCceeEEEe
Confidence            468999764 6778999999998875432  1112211111  1247999999999999999999999998776654

Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process

>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A

Probab=99.40  E-value=5.5e-12  Score=75.43  Aligned_cols=79  Identities=24%  Similarity=0.607  Sum_probs=59.3

Q ss_pred             CCeeEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEE
Q psy7036           8 APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVK   87 (254)
Q Consensus         8 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~   87 (254)
                      .|.+...+  ..+.+|++++|.|.+.+.|...+.|++++..+.....               .+.+.+++..|+|.|+|.
T Consensus         1 kP~l~~~~--~~v~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~---------------~~~~~~~~~~~~g~y~C~   63 (80)
T PF13895_consen    1 KPVLSSSP--QSVEEGDSVTLTCSVSGNPPPQVQWYKNGSPINSSQN---------------GLFIPNVSPEDSGNYTCR   63 (80)
T ss_dssp             --EEEEES--SEEETTSEEEEEEEEESSSSSEEEEEETTEEEEEESS---------------EEEESSEEGGGTEEEEEE
T ss_pred             CcEEEccc--eEEeCCCcEEEEEEEEcccceeeeeeeeeeeeeeeee---------------eeeeeeeccccCEEEEEE
Confidence            36666555  4588999999999999888899999999987774322               266688889999999999


Q ss_pred             EEcCCC-ceEEEEEEEE
Q psy7036          88 AKNKMG-EVAASINLNF  103 (254)
Q Consensus        88 ~~~~~~-~~~~~~~l~v  103 (254)
                      +.+..+ .....+.|.|
T Consensus        64 ~~~~~~~~~s~~~~v~V   80 (80)
T PF13895_consen   64 ASNGSGSNTSTSVNVTV   80 (80)
T ss_dssp             EEETTEEEEEEEEEEEE
T ss_pred             EEeCCCCeEeeeEEeeC
Confidence            998654 3444555543

...

>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

Probab=99.38  E-value=1.4e-11  Score=74.53  Aligned_cols=81  Identities=23%  Similarity=0.383  Sum_probs=61.1

Q ss_pred             eecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcceEEE
Q psy7036         123 QEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATI  202 (254)
Q Consensus       123 ~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~  202 (254)
                      .+..|+.+.|.|.+.+.|.+.+.|++++..+...........   ......|.|.++..+|.|.|.|.+.|..|....++
T Consensus         5 ~~~~G~~~~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~---~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~~~~~~   81 (85)
T cd05729           5 AVPAGSTVRLKCPASGNPRPTITWLKDGKPFKKEHRIGGYKV---RKKKWTLILESVVPSDSGKYTCIVENKYGSINHTY   81 (85)
T ss_pred             EecCCCcEEEEEEcCCCCCCeEEEEECCEECcccCceeEEEc---cCcEEEEEEeECCcccCEEEEEEEEECCceEEEEE
Confidence            455799999999999999999999999887654322211111   11123799999999999999999999999877777


Q ss_pred             EEEE
Q psy7036         203 SLNF  206 (254)
Q Consensus       203 ~~~v  206 (254)
                      .|.|
T Consensus        82 ~l~v   85 (85)
T cd05729          82 KVDV   85 (85)
T ss_pred             EEeC
Confidence            6653

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin

>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1)

Probab=99.38  E-value=4e-12  Score=77.32  Aligned_cols=81  Identities=16%  Similarity=0.263  Sum_probs=58.3

Q ss_pred             CceeecCCCeEEEEEEEe-----------eCCCCceEEEeCCEEeeeCCc-----ceEEEeecCCcceEEEEEEeccCCC
Q psy7036          16 QLRQEDEGNRLIFECQLL-----------CNPKPDIVWFRGETQLSEDTR-----TVMKTTPIGTNKYLVALELDDVIET   79 (254)
Q Consensus        16 ~~~~v~~g~~v~l~C~~~-----------~~~~~~v~W~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~i~~~~~~   79 (254)
                      ....+.+||++.|.|...           ......+.|||++..+.....     .++..  .+.     .|.|.++..+
T Consensus         8 ~~~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~~--~~~-----~Lwf~Pa~~e   80 (104)
T cd05896           8 KKYMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMSK--EED-----SIWFRPAELQ   80 (104)
T ss_pred             eeEEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEEE--eCC-----EEEEEeCChh
Confidence            446789999999999972           122447999999755544321     12221  122     7999999999


Q ss_pred             CCeEEEEEEEcCCCceEEEEEEEE
Q psy7036          80 DAGLYKVKAKNKMGEVAASINLNF  103 (254)
Q Consensus        80 d~G~Y~C~~~~~~~~~~~~~~l~v  103 (254)
                      |+|.|+|++.|........+.|+|
T Consensus        81 DSG~Y~C~~rN~t~C~~~~i~l~V  104 (104)
T cd05896          81 DSGLYTCVLRNSTYCMKVSMSLTV  104 (104)
T ss_pred             hCeEEEEEECCCCcceEEEEEEEC
Confidence            999999999998877776666654

Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of

>PHA03376 BARF1; Provisional

Probab=99.36  E-value=8.5e-11  Score=78.14  Aligned_cols=126  Identities=20%  Similarity=0.206  Sum_probs=75.4

Q ss_pred             ceeecCCCeEEEEEEEee---CCCCceEEEeC----CEEe-e----------eCCcceEEEeecCCcceEEEEEEeccCC
Q psy7036          17 LRQEDEGNRLIFECQLLC---NPKPDIVWFRG----ETQL-S----------EDTRTVMKTTPIGTNKYLVALELDDVIE   78 (254)
Q Consensus        17 ~~~v~~g~~v~l~C~~~~---~~~~~v~W~~~----~~~~-~----------~~~~~~~~~~~~~~~~~~~~l~i~~~~~   78 (254)
                      .+.+..|+++.|+|..+.   .+...|.|+|.    ...+ .          -..+.+.....+.   .+.+|.|.+++.
T Consensus        20 pVta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~~---gnvsLvI~~l~l   96 (221)
T PHA03376         20 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSA---NTFFLVVTAANI   96 (221)
T ss_pred             chhheeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEecC---CeEEEEEEeeee
Confidence            457789999999999863   23457999994    2211 1          1122222221112   345899999999


Q ss_pred             CCCeEEEEEEEcCCCceEEEEEEEEeccccCCCCCccccCCCeeeecCCCeEEEEEEEeeCCCCeEEEEECCE
Q psy7036          79 TDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGV  151 (254)
Q Consensus        79 ~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~  151 (254)
                      +|.|.|+|.+..........--|.+..      |..............-+..++.|.+.++|.|.+.|..+..
T Consensus        97 SDdGtY~C~fQkge~~~~k~ehLt~V~------~~~Lsv~a~~~dFp~~~~~~i~C~sggfP~P~~~Wle~~~  163 (221)
T PHA03376         97 SHDGNYLCRMKLGETEVTKQEHLSVVK------PLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEG  163 (221)
T ss_pred             cCCceEEEEEEcCCCceeeeeeeeeee------cceEEEEeccccCCCCCeeEEEEecCCcCCchheeccccC
Confidence            999999999987654433333333221      0000000000011114456889998889999999987654

>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4

Probab=99.36  E-value=5e-12  Score=76.87  Aligned_cols=75  Identities=12%  Similarity=0.123  Sum_probs=53.5

Q ss_pred             eeecCCCeEEEEEEEeeCCCCceEEEeCCEEeee--------------CCcceEEEeecCCcceEEEEEEeccCCCCCeE
Q psy7036          18 RQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSE--------------DTRTVMKTTPIGTNKYLVALELDDVIETDAGL   83 (254)
Q Consensus        18 ~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~   83 (254)
                      +.+.+|++|+|.|.+.+.+.+.+.||+++.....              ..++....  .........|.|.+++.+|+|.
T Consensus         2 v~~~~G~~VtL~C~~s~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~--~~~~~g~~~L~I~~l~~sDsgt   79 (94)
T cd07690           2 VLGKKGDTAELPCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRR--NLWDQGSFPLIIKNLKIEDSDT   79 (94)
T ss_pred             eEeeCCCCEEEEEEeCCCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceec--ccCCCCeEEEEECCCCHHHCEE
Confidence            4578999999999998888899999987633211              11222221  1112345589999999999999


Q ss_pred             EEEEEEcCCCc
Q psy7036          84 YKVKAKNKMGE   94 (254)
Q Consensus        84 Y~C~~~~~~~~   94 (254)
                      |.|.+.|..++
T Consensus        80 Y~C~v~~~~~~   90 (94)
T cd07690          80 YICEVEDKKEE   90 (94)
T ss_pred             EEEEECCccce
Confidence            99999876543

Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=99.35  E-value=2.3e-11  Score=74.50  Aligned_cols=73  Identities=15%  Similarity=0.300  Sum_probs=51.9

Q ss_pred             CeeeecCCCeEEEEEEEeeCCCCeEEEEECCEeccc-CC-----cceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEc
Q psy7036         120 SIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKE-DK-----RHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKN  193 (254)
Q Consensus       120 ~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~-~~-----~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~  193 (254)
                      ....+..|+.+.|.|.+.+.|.+.+.|++.+..+.. ..     ..++...... .....|.|.++..+|+|.|+|.+..
T Consensus         5 ~~~tv~~G~tv~L~C~v~g~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~-~~~~~L~I~nV~~~D~G~YtC~~~t   83 (95)
T cd05882           5 QDETVAVGGTVTLKCGVKEHDNSSLQWSNTAQQTLYFGEKRALRDNRIQLVKST-PTELIISISNVQLSDEGEYTCSIFT   83 (95)
T ss_pred             ccEEEecCCcEEEEEEEeCCCCCeEEEeccCccEEEeCCeEEEeCCeEEEEeCC-CceEEEEECCCCcccCEEEEEEEEe
Confidence            356778899999999999999999999987753211 10     1111111111 0123899999999999999999987

Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format

>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R)

Probab=99.35  E-value=1.2e-11  Score=74.49  Aligned_cols=80  Identities=15%  Similarity=0.191  Sum_probs=56.9

Q ss_pred             CCeEEEEEEEeeCC--CCceEEEeCCEEeeeC---CcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcCCCceEE
Q psy7036          23 GNRLIFECQLLCNP--KPDIVWFRGETQLSED---TRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAA   97 (254)
Q Consensus        23 g~~v~l~C~~~~~~--~~~v~W~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~   97 (254)
                      |+++.|.|.+.+.+  ...+.|.+.+......   ...+..  ........+.|.|.+++..|+|.|+|.+.|..+....
T Consensus         1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~--~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~   78 (86)
T cd05862           1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENRRS--LQEHTELSSTLTIENVTLSDLGRYTCTASSGQMIAKN   78 (86)
T ss_pred             CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceeccccccc--ccccceeeeEEEEecCCcccCEEEEEEEeecceEecc
Confidence            78999999998755  4578998877643211   110100  0111234568999999999999999999998888777


Q ss_pred             EEEEEEe
Q psy7036          98 SINLNFS  104 (254)
Q Consensus        98 ~~~l~v~  104 (254)
                      ...|.|.
T Consensus        79 ~t~~~V~   85 (86)
T cd05862          79 STIVIVH   85 (86)
T ss_pred             cEEEEEe
Confidence            8887774

IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge

>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=99.33  E-value=6e-12  Score=76.30  Aligned_cols=73  Identities=21%  Similarity=0.255  Sum_probs=54.6

Q ss_pred             CCceeecCCCeEEEEEEE-eeCCCCceEEEeCCEEee--eCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcC
Q psy7036          15 PQLRQEDEGNRLIFECQL-LCNPKPDIVWFRGETQLS--EDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNK   91 (254)
Q Consensus        15 ~~~~~v~~g~~v~l~C~~-~~~~~~~v~W~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~   91 (254)
                      .+...+.+|+.+.|.|.. .|.|.+.+.|++++..+.  ...+ ++....++      .|.|.+++.+|+|.|+|.|.|.
T Consensus        10 ~~~~~v~eG~~~~L~C~pP~g~P~p~~~W~k~~~~~~~~~d~r-~~~~~~~G------~L~fs~v~~~D~g~Y~C~A~n~   82 (96)
T cd05727          10 RDEVKVKEGWGVVLFCDPPPHYPDLSYRWLLNEFPNFIPEDGR-RFVSQTNG------NLYIAKVEASDRGNYSCFVSSP   82 (96)
T ss_pred             cCceeeeeCCcEEEeeCCCCCCCCCEEEEEECCcccccccCCC-eEEeCCCC------cEEEeecCHhhCceeEEEEEec
Confidence            345678999999999986 668899999999987542  2222 22222222      7999999999999999999987


Q ss_pred             CCc
Q psy7036          92 MGE   94 (254)
Q Consensus        92 ~~~   94 (254)
                      ...
T Consensus        83 ~~~   85 (96)
T cd05727          83 SST   85 (96)
T ss_pred             ccC
Confidence            643

Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively)

Probab=99.33  E-value=2.7e-11  Score=74.79  Aligned_cols=83  Identities=17%  Similarity=0.234  Sum_probs=56.1

Q ss_pred             CceeecCCCeEEEEEEEeeCCCCceEEEeCCEEe-e-------eCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEE
Q psy7036          16 QLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQL-S-------EDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVK   87 (254)
Q Consensus        16 ~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~-~-------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~   87 (254)
                      +...+.+|++++|.|.+.+.+.+.+.|++.+..+ .       ...++.+.  .  .......|.|.+++.+|+|.|+|.
T Consensus         5 ~~~~v~~G~~v~L~C~~~~~~~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~--~--~~~~~~~L~I~~v~~~DsG~Y~C~   80 (95)
T cd05717           5 QDVTVVEGGTATLKCRVKNNDNSSLQWSNPNQQTLYFNDKRALRDNRIQLV--N--FSANELSISISNVSLSDEGRYTCS   80 (95)
T ss_pred             CcEEEcCCCCEEEEEEECCCCCceEEEeCCCCcEEEeccccccccCcEEEE--c--CCCCeeEEEEccCCcccCEEEEEE
Confidence            4567899999999999988788899998633221 1       11222221  1  111234799999999999999999


Q ss_pred             EEcCCCceEEEEEEEE
Q psy7036          88 AKNKMGEVAASINLNF  103 (254)
Q Consensus        88 ~~~~~~~~~~~~~l~v  103 (254)
                      +.+.. .....+.|.|
T Consensus        81 ~~~~~-~~~~~~~~~v   95 (95)
T cd05717          81 LYTMP-VQTAKATVTV   95 (95)
T ss_pred             EecCC-CceEEEEEEC
Confidence            98654 3345555543

Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form

>smart00409 IG Immunoglobulin

Probab=99.33  E-value=9.2e-11  Score=70.93  Aligned_cols=83  Identities=22%  Similarity=0.465  Sum_probs=63.2

Q ss_pred             CceeecCCCeEEEEEEEeeCCCCceEEEeC-CEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcCCCc
Q psy7036          16 QLRQEDEGNRLIFECQLLCNPKPDIVWFRG-ETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGE   94 (254)
Q Consensus        16 ~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~   94 (254)
                      ....+.+|+++.|.|.+.+.+.+.+.|+++ +..+....+........     ...|.|.+++..|+|.|.|.+.+..+.
T Consensus         2 ~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~-----~~~l~i~~~~~~d~G~Y~C~v~~~~~~   76 (86)
T smart00409        2 PSVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGS-----NSTLTISNVTPEDSGTYTCAATNSSGS   76 (86)
T ss_pred             CcEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCC-----eeEEEEEeeccccCeEEEEEEEcCCCe
Confidence            455778999999999998777889999998 77775344433322211     348999999999999999999988777


Q ss_pred             eEEEEEEEE
Q psy7036          95 VAASINLNF  103 (254)
Q Consensus        95 ~~~~~~l~v  103 (254)
                      ....+.|.|
T Consensus        77 ~~~~~~l~V   85 (86)
T smart00409       77 ASSTTTLTV   85 (86)
T ss_pred             EEEEEEEEE
Confidence            666666654

>smart00410 IG_like Immunoglobulin like

Probab=99.33  E-value=9.2e-11  Score=70.93  Aligned_cols=83  Identities=22%  Similarity=0.465  Sum_probs=63.2

Q ss_pred             CceeecCCCeEEEEEEEeeCCCCceEEEeC-CEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcCCCc
Q psy7036          16 QLRQEDEGNRLIFECQLLCNPKPDIVWFRG-ETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGE   94 (254)
Q Consensus        16 ~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~   94 (254)
                      ....+.+|+++.|.|.+.+.+.+.+.|+++ +..+....+........     ...|.|.+++..|+|.|.|.+.+..+.
T Consensus         2 ~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~-----~~~l~i~~~~~~d~G~Y~C~v~~~~~~   76 (86)
T smart00410        2 PSVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGS-----NSTLTISNVTPEDSGTYTCAATNSSGS   76 (86)
T ss_pred             CcEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCC-----eeEEEEEeeccccCeEEEEEEEcCCCe
Confidence            455778999999999998777889999998 77775344433322211     348999999999999999999988777


Q ss_pred             eEEEEEEEE
Q psy7036          95 VAASINLNF  103 (254)
Q Consensus        95 ~~~~~~l~v  103 (254)
                      ....+.|.|
T Consensus        77 ~~~~~~l~V   85 (86)
T smart00410       77 ASSTTTLTV   85 (86)
T ss_pred             EEEEEEEEE
Confidence            666666654

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.

>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin

Probab=99.33  E-value=2.3e-11  Score=73.98  Aligned_cols=79  Identities=24%  Similarity=0.344  Sum_probs=55.3

Q ss_pred             eeecCCCeEEEEEEEeeCCCCceEEEeCCE--EeeeC--CcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEE-cCC
Q psy7036          18 RQEDEGNRLIFECQLLCNPKPDIVWFRGET--QLSED--TRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAK-NKM   92 (254)
Q Consensus        18 ~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~-~~~   92 (254)
                      +.+.+|+++.|.|.. +.|.+.+.||+.+.  .....  ...+....       ...|.|.+++.+|+|.|+|.+. +..
T Consensus         6 ~~~~eG~~v~L~C~~-~~p~p~v~Wykq~~g~~~~~~~~~~~r~~~~-------~~~L~I~~~~~~DsG~Y~C~a~~~~~   77 (91)
T cd05871           6 VYGVENNSTFLECLP-KSPQASVKWLFQRGGDQRKEEVKTEERLIHT-------ERGLLLRSLQRSDAGVYTCTAVEHSF   77 (91)
T ss_pred             EEEecCCcEEEEEEC-CCCCceEEEEEECCCCCccccccccccEEEe-------cCeEEEeeCChhHCEEEEEEEEccCC
Confidence            457899999999996 47888999998432  21110  11111111       1269999999999999999997 566


Q ss_pred             CceEEEEEEEEe
Q psy7036          93 GEVAASINLNFS  104 (254)
Q Consensus        93 ~~~~~~~~l~v~  104 (254)
                      +.....++|.|.
T Consensus        78 ~~~~~~~~l~v~   89 (91)
T cd05871          78 SQTLAKYTLHVI   89 (91)
T ss_pred             eEEEEEEEEEEe
Confidence            666677777775

Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula

>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin

Probab=99.32  E-value=3.6e-11  Score=73.26  Aligned_cols=81  Identities=23%  Similarity=0.387  Sum_probs=59.8

Q ss_pred             CeeeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCC--cceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCC-
Q psy7036         120 SIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDK--RHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELG-  196 (254)
Q Consensus       120 ~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~-  196 (254)
                      ....+..|+.+.|.|.+.+ |.+.+.|++++..+....  ..++.....      .|.|.++..+|+|.|.|.+.+..+ 
T Consensus         4 ~~~~v~~g~~v~L~C~~~~-p~~~i~W~k~~~~~~~~~~~~~~~~~~~~------~L~I~~~~~~D~G~Y~C~a~~~~~~   76 (89)
T cd04979           4 KVVTVVEGNSVFLECSPKS-NLASVVWLFQGGPLQRKEEPEERLLVTED------GLLIRSVSPADAGVYTCQSVEHGFK   76 (89)
T ss_pred             eEEEEECCCcEEEEEeCCC-CCceEEEEECCcccccccCcCceEEEcCC------CEEEccCCHHHCEEEEEEEecCccc
Confidence            3456778999999999876 778999999987765432  123333222      589999999999999999987654 


Q ss_pred             cceEEEEEEEe
Q psy7036         197 ESNATISLNFD  207 (254)
Q Consensus       197 ~~~~~~~~~v~  207 (254)
                      ....+..|.|.
T Consensus        77 ~~~~~~~l~V~   87 (89)
T cd04979          77 QTLATYSLNVL   87 (89)
T ss_pred             eeEeEEEEEEe
Confidence            44666776664

Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.

>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins

Probab=99.31  E-value=3.2e-11  Score=72.86  Aligned_cols=76  Identities=32%  Similarity=0.543  Sum_probs=58.9

Q ss_pred             CCeeeecCCCeEEEEEEEee-CCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCc
Q psy7036         119 PSIRQEDDGKRLLFECRIQA-DPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGE  197 (254)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~-~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~  197 (254)
                      +....+..|+.++|.|.+.+ .|.+.+.|++++..+...    . ...+     ..|.|.+++.+|+|.|.|.+.|..|.
T Consensus         8 p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~~----~-~~~~-----~~L~I~~v~~~DsG~Y~C~a~n~~g~   77 (85)
T cd05754           8 PRSQEVRPGADVSFICRAKSKSPAYTLVWTRVGGGLPSR----A-MDFN-----GILTIRNVQLSDAGTYVCTGSNMLDT   77 (85)
T ss_pred             CCceEEcCCCCEEEEEEcCCCCCCcEEEEEECCCcCCCc----c-cccC-----CEEEECCCCHHHCEEEEEEEeccCCe
Confidence            34567788999999999865 678899999988654321    1 1112     27999999999999999999999998


Q ss_pred             ceEEEEE
Q psy7036         198 SNATISL  204 (254)
Q Consensus       198 ~~~~~~~  204 (254)
                      ......|
T Consensus        78 ~~~~~~l   84 (85)
T cd05754          78 DEATATL   84 (85)
T ss_pred             EeEEEEE
Confidence            8776554

Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.

>smart00408 IGc2 Immunoglobulin C-2 Type

Probab=99.31  E-value=2.5e-11  Score=68.83  Aligned_cols=63  Identities=27%  Similarity=0.525  Sum_probs=49.1

Q ss_pred             CCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcCCC
Q psy7036          22 EGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMG   93 (254)
Q Consensus        22 ~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~   93 (254)
                      +|++++|.|.+.+.+.+.+.|++++..+..  ....  ...     ...|.|.+++..|+|.|+|.+.+..|
T Consensus         1 ~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~--~~~~--~~~-----~~~L~i~~~~~~d~G~Y~C~~~n~~g   63 (63)
T smart00408        1 EGQSVTLTCPAEGDPVPNITWLKDGKPLPE--SNRL--SAS-----GSTLTIKSVSLEDSGEYTCVAENSAG   63 (63)
T ss_pred             CCceEEEEeeCccCCCCeEEEEECCEECCC--CCEE--ecC-----CcEEEEeeCCcccCEEEEEEEecCCC
Confidence            588999999988788889999999987761  1111  111     12799999999999999999987653

>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=99.29  E-value=9e-11  Score=72.11  Aligned_cols=82  Identities=18%  Similarity=0.297  Sum_probs=54.9

Q ss_pred             CeeeecCCCeEEEEEEEeeCCCCeEEEEECCEe--------cccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEE
Q psy7036         120 SIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQ--------VKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTA  191 (254)
Q Consensus       120 ~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~--------~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~  191 (254)
                      ..+.+.+|+++.|.|.+.+.|.+.+.|++.+..        .....  ++...... ....+|.|.+++.+|+|.|.|.+
T Consensus         5 ~~v~v~eG~~v~L~C~~~~~p~~~v~W~~~~~~~l~~~~~~~~~~~--r~~~~~~~-~~~~sL~I~~v~~~DsG~Y~C~~   81 (95)
T cd07701           5 QNVTVVEGGTANLTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDN--RIELVRAS-WHELSISISDVSLSDEGQYTCSL   81 (95)
T ss_pred             ceEEEecCCcEEEEEEEecCCceEEEEeCCCCeEEEEcCcccccCC--CEEEEECC-CCcEEEEECcCCcccCEEEEEEe
Confidence            456788999999999999999999999863321        11112  22221110 01137999999999999999999


Q ss_pred             EcCCCcceEEEEEE
Q psy7036         192 KNELGESNATISLN  205 (254)
Q Consensus       192 ~~~~~~~~~~~~~~  205 (254)
                      .+..+ .+.+..|.
T Consensus        82 ~t~~~-~~~~~~l~   94 (95)
T cd07701          82 FTMPV-KTSKAYLT   94 (95)
T ss_pred             EeecC-ccEEEEEE
Confidence            97433 24444443

Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.

>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D

Probab=99.28  E-value=9.2e-11  Score=70.13  Aligned_cols=69  Identities=22%  Similarity=0.444  Sum_probs=54.2

Q ss_pred             CCeeeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCC
Q psy7036         119 PSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNEL  195 (254)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~  195 (254)
                      +....+..|+++.|.|.+. .+.+.+.|++++..+..... ++....+      .|.|.+++.+|+|.|+|.+.+..
T Consensus         3 P~~~~v~~G~~v~L~C~~~-~~~~~i~W~~ng~~i~~~~~-r~~~~~~------~L~I~nv~~~DsG~Y~C~a~e~~   71 (87)
T cd05873           3 PRQRTFKLGNNAELKCSPK-SNLARVVWKFDGKVLTPESA-KYLLYRD------GLLIFNASEADAGRYQCLSVEKS   71 (87)
T ss_pred             cceEEEECCCCEEEEEECC-CCCCeEEEEECCEECCCCCc-eEEEECC------cEEEeCCCHHHCEEEEEEEEecc
Confidence            3456778899999999975 46789999999999875532 3333333      69999999999999999998753

Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas

>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=99.28  E-value=4.6e-11  Score=72.67  Aligned_cols=76  Identities=22%  Similarity=0.304  Sum_probs=56.8

Q ss_pred             eeecCCCeEEEEEEEee-----CCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCC
Q psy7036         122 RQEDDGKRLLFECRIQA-----DPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELG  196 (254)
Q Consensus       122 ~~~~~g~~~~l~C~~~~-----~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~  196 (254)
                      ..+..|....|.|...+     +|.+.+.|+|++..+..... .. . .++     .|.|.++..+|+|.|+|.+.|..+
T Consensus         5 ~~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~~~~-~~-~-~~~-----~L~I~~v~~~DsG~YtC~~~n~~~   76 (92)
T cd05757           5 QILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEGDRK-RF-V-KGS-----KLLIQNVTEEDAGNYTCKLTFTHN   76 (92)
T ss_pred             EEEeeccCCEEECCChHHccCCCCCCcEEEeECCEECCCCcc-EE-e-cCC-----EEEEeeCChhhCEEEEEEEEecCC
Confidence            45667899999998643     25679999999998865432 22 1 222     799999999999999999999988


Q ss_pred             cceEEEEEE
Q psy7036         197 ESNATISLN  205 (254)
Q Consensus       197 ~~~~~~~~~  205 (254)
                      .....++..
T Consensus        77 ~~~~~~t~t   85 (92)
T cd05757          77 GKQYNVTRT   85 (92)
T ss_pred             CEEEEEEEE
Confidence            765444333

Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1

>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2)

Probab=99.26  E-value=5.8e-11  Score=72.11  Aligned_cols=71  Identities=17%  Similarity=0.216  Sum_probs=51.7

Q ss_pred             eeecCCCeEEEEEEE-e----eCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcCC
Q psy7036          18 RQEDEGNRLIFECQL-L----CNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKM   92 (254)
Q Consensus        18 ~~v~~g~~v~l~C~~-~----~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~   92 (254)
                      ..+.+|.+..|.|.- .    ..+.+.++||||+.++...... ........     .|.|.+++.+|+|.|+|++.+..
T Consensus         5 ~~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~~~~~-~~~~~~~~-----~L~I~~v~~~D~G~YtC~~~~~~   78 (95)
T cd05897           5 QILFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDKDNEK-FYSLKGST-----YLHIIDVSLNDSGYYTCKLQFTH   78 (95)
T ss_pred             eEeccccCcEEECCCHHHcccCCCCCcEEEccCCEECcCCCcc-eEecCCCC-----EEEEEEcChhhCEEEEEEEEEee
Confidence            356789999999983 2    2356799999999988654322 11111111     69999999999999999999876


Q ss_pred             Cc
Q psy7036          93 GE   94 (254)
Q Consensus        93 ~~   94 (254)
                      +.
T Consensus        79 ~g   80 (95)
T cd05897          79 EG   80 (95)
T ss_pred             CC
Confidence            54

Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=99.23  E-value=7.1e-11  Score=70.64  Aligned_cols=64  Identities=22%  Similarity=0.341  Sum_probs=50.4

Q ss_pred             eeecCCCeEEEEEEEee-CCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCc
Q psy7036         122 RQEDDGKRLLFECRIQA-DPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGE  197 (254)
Q Consensus       122 ~~~~~g~~~~l~C~~~~-~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~  197 (254)
                      ..+.+|+.++|.|.+.. .+...+.|+|++..+....       .+     +.|.|.+++.+|+|.|+|.+.+..+.
T Consensus         9 ~~V~~G~~vtL~C~~~~~~~~~~~~w~k~g~~~~~~~-------~~-----~~l~I~~~~~~dsG~Y~C~~~~~~~~   73 (83)
T cd05753           9 RVVFEGEPLVLRCHGWKNKPVYKVTYYRDGKAKKYSH-------SN-----SNLSIPQATLSDSGSYHCSGIIGSYD   73 (83)
T ss_pred             ceecCCCCEEEEeeCCCCCcceEEEEEECCeEccccC-------CC-----ceEEECccCHHHCEEEEEEEEeCCce
Confidence            35778999999999854 4566799999987653110       11     27999999999999999999998874

Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B

Probab=99.22  E-value=8.8e-11  Score=69.68  Aligned_cols=77  Identities=22%  Similarity=0.299  Sum_probs=56.2

Q ss_pred             CceeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcCCCc-
Q psy7036          16 QLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGE-   94 (254)
Q Consensus        16 ~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~-   94 (254)
                      +...+.+|+++.|.|... +..+.+.|++++..+..+.+...  ...       .|.|.+++..|+|.|.|.+. ..|. 
T Consensus         4 ~~~tv~~g~~v~L~C~~~-s~~A~v~W~~ng~~l~~~~r~~~--~~~-------GLlI~~~~~~dsG~Y~C~s~-E~gf~   72 (85)
T cd05872           4 KNRTVAPGADVVLPCQLR-SNLASPVWLFNGTPLNAQFSYRV--GTD-------GLLILVTSPEHSGTYRCYSE-EEGFQ   72 (85)
T ss_pred             eEEEEecCCCEEEECCCC-CCCccEEEEECCcccCCCcceEE--eCC-------CCEEEECCHhhCEEEEEEEe-cCCCe
Confidence            456789999999999997 45779999999998865544322  222       37899999999999999987 3333 


Q ss_pred             -eEEEEEEEE
Q psy7036          95 -VAASINLNF  103 (254)
Q Consensus        95 -~~~~~~l~v  103 (254)
                       .-....|.|
T Consensus        73 ~~~~~y~l~v   82 (85)
T cd05872          73 QLVASYSLNV   82 (85)
T ss_pred             EEEEEEEEEE
Confidence             333444444

Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.

>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)

Probab=99.22  E-value=2e-10  Score=68.78  Aligned_cols=76  Identities=18%  Similarity=0.313  Sum_probs=50.6

Q ss_pred             eEEEEEEEee-CCCCceEEEeCCEEeeeCCcceEEEeecCC-cceEEEEEEeccCCCCCeEEEEEEEcCCCc--eEEEEE
Q psy7036          25 RLIFECQLLC-NPKPDIVWFRGETQLSEDTRTVMKTTPIGT-NKYLVALELDDVIETDAGLYKVKAKNKMGE--VAASIN  100 (254)
Q Consensus        25 ~v~l~C~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~--~~~~~~  100 (254)
                      ++.|.|.+.| .|.+.++|+++|..+..... ......++. ....+.|.|......|.|.|+|.+.|....  ...+++
T Consensus         1 ~~~L~C~v~g~~P~~~v~W~~~g~~l~~~~~-~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~l~~~~~~s~~   79 (82)
T cd05759           1 PYNLTCRARGAKPAAEIIWFRDGEVLDGATY-SKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNEALPTGKETSVT   79 (82)
T ss_pred             CEEEEEEEeCccCCCEEEEEECCEEccCcee-eeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCccCCCCcEEEEE
Confidence            3689999987 68889999999998754322 111111111 123457888888888899999999987644  334444


Q ss_pred             E
Q psy7036         101 L  101 (254)
Q Consensus       101 l  101 (254)
                      |
T Consensus        80 l   80 (82)
T cd05759          80 L   80 (82)
T ss_pred             E
Confidence            4

Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4))

Probab=99.22  E-value=1.5e-10  Score=67.68  Aligned_cols=66  Identities=12%  Similarity=0.170  Sum_probs=49.2

Q ss_pred             EEEEEEEee-CCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcCCCc
Q psy7036          26 LIFECQLLC-NPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGE   94 (254)
Q Consensus        26 v~l~C~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~   94 (254)
                      +.|+|...+ .|.+.++|||++..+.....   ....+......+.|.|...+.+|.+.|+|++.|..+.
T Consensus         2 ~~L~C~s~~skP~a~i~W~k~~~~l~~~~~---~~~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~   68 (80)
T cd05885           2 VELTCLSPRSKPAATLRWYRDRKELKGVIS---QQENGKTVSVSNTIRFPVDRKDDGAILSCEASHPALV   68 (80)
T ss_pred             EEEEEeCCCccCCCeEEEEECCEECCCCcc---cccCCceEEEEEEEEEEeeeccCCcEEEEEEEChhhC
Confidence            789999854 79999999999999864321   1111111233447999999999999999999998765

Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.

>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=99.22  E-value=8e-11  Score=71.28  Aligned_cols=78  Identities=18%  Similarity=0.255  Sum_probs=57.5

Q ss_pred             CeeEe-CCCceeecCCCeEEEEEE-EeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCe-EEE
Q psy7036           9 PSFTQ-KPQLRQEDEGNRLIFECQ-LLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAG-LYK   85 (254)
Q Consensus         9 p~~~~-~~~~~~v~~g~~v~l~C~-~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G-~Y~   85 (254)
                      |.|.. ..+.+.+.+|+.+.|.|. ..|.|.+.+.|++++...-.. ..++....++      .|.|.+++..|+| .|.
T Consensus         3 ~~~~~~~~~~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~~i~~-~~Ri~~~~~G------nL~fs~v~~~D~g~~Y~   75 (95)
T cd05845           3 PKWPKEKIRPVEVEEGDSVVLPCNPPKSAVPLRIYWMNSDLLHITQ-DERVSMGQNG------NLYFANVEEQDSHPDYI   75 (95)
T ss_pred             CcCCccccceeEEecCCCEEEEecCCCCCCCCEEEEECCCCccccc-cccEEECCCc------eEEEEEEehhhCCCCeE
Confidence            34433 346788999999999997 588999999999876542221 2233333333      7999999999999 899


Q ss_pred             EEEEcCCC
Q psy7036          86 VKAKNKMG   93 (254)
Q Consensus        86 C~~~~~~~   93 (254)
                      |.|.+...
T Consensus        76 C~a~~~~~   83 (95)
T cd05845          76 CHAHFPGL   83 (95)
T ss_pred             EEEEcccc
Confidence            99997653

Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=99.21  E-value=8.5e-11  Score=71.32  Aligned_cols=73  Identities=16%  Similarity=0.257  Sum_probs=55.7

Q ss_pred             eeeecCCCeEEEEEE-EeeCCCCeEEEEECCEeccc-CCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcc
Q psy7036         121 IRQEDDGKRLLFECR-IQADPAPTVIWSHSGVQVKE-DKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGES  198 (254)
Q Consensus       121 ~~~~~~g~~~~l~C~-~~~~~~~~~~W~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~  198 (254)
                      ...+.+|+.+.|.|. ..+.|.+.+.|++++..+.. .+...+....+|     .|.|.+++.+|+|.|.|.|.|.....
T Consensus        12 ~~~v~eG~~~~L~C~pP~g~P~p~~~W~k~~~~~~~~~d~r~~~~~~~G-----~L~fs~v~~~D~g~Y~C~A~n~~~~~   86 (96)
T cd05727          12 EVKVKEGWGVVLFCDPPPHYPDLSYRWLLNEFPNFIPEDGRRFVSQTNG-----NLYIAKVEASDRGNYSCFVSSPSSTK   86 (96)
T ss_pred             ceeeeeCCcEEEeeCCCCCCCCCEEEEEECCcccccccCCCeEEeCCCC-----cEEEeecCHhhCceeEEEEEecccCC
Confidence            456778999999997 55788999999999875422 122334344455     79999999999999999999976544

Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>smart00408 IGc2 Immunoglobulin C-2 Type

Probab=99.21  E-value=2.3e-10  Score=64.76  Aligned_cols=63  Identities=27%  Similarity=0.671  Sum_probs=49.3

Q ss_pred             CCCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCC
Q psy7036         126 DGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELG  196 (254)
Q Consensus       126 ~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~  196 (254)
                      +|+.+.|.|.+.+.+.+.+.|++++..+.  ..... ....     ..|.|.++..+|.|.|+|.+.|..|
T Consensus         1 ~g~~~~l~C~~~~~~~~~v~W~~~~~~~~--~~~~~-~~~~-----~~L~i~~~~~~d~G~Y~C~~~n~~g   63 (63)
T smart00408        1 EGQSVTLTCPAEGDPVPNITWLKDGKPLP--ESNRL-SASG-----STLTIKSVSLEDSGEYTCVAENSAG   63 (63)
T ss_pred             CCceEEEEeeCccCCCCeEEEEECCEECC--CCCEE-ecCC-----cEEEEeeCCcccCEEEEEEEecCCC
Confidence            47889999998888888999999988776  11111 1122     2799999999999999999998754

>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=99.21  E-value=4.8e-10  Score=68.20  Aligned_cols=73  Identities=19%  Similarity=0.199  Sum_probs=52.8

Q ss_pred             CceeecCCCeEEEEEEEeeCCCCceEEEeCCEEe--------eeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEE
Q psy7036          16 QLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQL--------SEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVK   87 (254)
Q Consensus        16 ~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~   87 (254)
                      +.+.+.+|++++|+|.+.+.....+.|++-+..+        ..+.++.....  .  ....+|.|.+++.+|+|.|.|.
T Consensus         5 ~nvtv~~G~ta~L~C~v~~~~~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~--~--~~~~tL~I~~vq~~D~G~Y~Cq   80 (95)
T cd05881           5 EDVTVVEGEVAIISCRVKNNDDSVIQLLNPNRQTIYFRDVRPLKDSRFQLVNF--S--SNELRVSLSNVSLSDEGRYFCQ   80 (95)
T ss_pred             CceEEcCCCcEEEEEEEccCCccEEEEEecCCcEEEecCccccCCcCEEEEeC--C--CCEEEEEECcCCcccCEEEEEE
Confidence            4568899999999999987666778898766432        23344443321  1  2244799999999999999999


Q ss_pred             EEcCC
Q psy7036          88 AKNKM   92 (254)
Q Consensus        88 ~~~~~   92 (254)
                      +....
T Consensus        81 v~t~p   85 (95)
T cd05881          81 LYTDP   85 (95)
T ss_pred             EEccc
Confidence            98543

Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a

>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs

Probab=99.20  E-value=2.4e-11  Score=69.21  Aligned_cols=63  Identities=19%  Similarity=0.376  Sum_probs=44.2

Q ss_pred             CCeEEEEEEE-eeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEE
Q psy7036          23 GNRLIFECQL-LCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKA   88 (254)
Q Consensus        23 g~~v~l~C~~-~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~   88 (254)
                      |++++|.|.+ .+.+...+.|++++............  ... ......|.|.+++.+|+|.|+|.|
T Consensus         1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~--~~~-~~~~~~L~i~~v~~~d~G~Y~C~v   64 (64)
T PF00047_consen    1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPEGSTTNRS--TNS-VSSTSRLTISNVTPEDSGTYTCVV   64 (64)
T ss_dssp             TSEEEEEEEEEESSSTSEEEEEETTTTTSEEEEEEEE--ETT-TEEEEEEEESSCTGGGTEEEEEEE
T ss_pred             CCeEEEEeecCCCCCCcEEEEEECCccccCcceeEee--ccc-ceeeeEEEEccCCHHHCEEEEEEC
Confidence            7899999999 65778899999988754332221111  111 111114999999999999999986

; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....

>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain

Probab=99.19  E-value=1.1e-10  Score=77.49  Aligned_cols=72  Identities=21%  Similarity=0.329  Sum_probs=56.8

Q ss_pred             eEEEEccCCCCCceeEEEEEEcCCCcceEEEEEEEecCCCCCCCCCCCCeeecCCccccccCCCCcEEEEEEEecc-CC-
Q psy7036         172 ASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLVGE-PE-  249 (254)
Q Consensus       172 ~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~l~C~~~~~-p~-  249 (254)
                      ++|.|.+++.+|+|.|.|.+.+..+.....+.|.+..          +|.+...+.......|+ .+.|.|.+.|. |. 
T Consensus         1 asL~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~v~~----------~P~v~~~~~~~~~~~~~-~~~L~C~a~g~~P~~   69 (139)
T cd05771           1 ASLTLPGLTVHDEGTYICSVSTPPHQAQQIIQLSVSE----------PPRVRLSLEKLVSMIEE-PQTLICHIAGYYPLD   69 (139)
T ss_pred             CeEEECCCCHHHCEEEEEEEEccCcceeeEEEEEEec----------CCceEEeCCCceeecCC-cEEEEEEECCCCCCC
Confidence            3799999999999999999999888888888888874          45555555444444677 89999999986 54 


Q ss_pred             CceeC
Q psy7036         250 PTISW  254 (254)
Q Consensus       250 p~~~W  254 (254)
                      +.|.|
T Consensus        70 ~~i~W   74 (139)
T cd05771          70 VQVEW   74 (139)
T ss_pred             eEEEE
Confidence            37888

IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.

>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins

Probab=99.17  E-value=7e-10  Score=69.97  Aligned_cols=83  Identities=16%  Similarity=0.314  Sum_probs=55.8

Q ss_pred             CCCeEEEEEEEeeCC------CCceEEEeCC-----E-Eee--eC------CcceEEEeecCCcceEEEEEEeccCCCCC
Q psy7036          22 EGNRLIFECQLLCNP------KPDIVWFRGE-----T-QLS--ED------TRTVMKTTPIGTNKYLVALELDDVIETDA   81 (254)
Q Consensus        22 ~g~~v~l~C~~~~~~------~~~v~W~~~~-----~-~~~--~~------~~~~~~~~~~~~~~~~~~l~i~~~~~~d~   81 (254)
                      .|++|+|.|.....+      ...+.|++..     . .+.  ..      ..+..+..........++|+|.+++.+|+
T Consensus         1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~sD~   80 (106)
T cd05714           1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRLEDS   80 (106)
T ss_pred             CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCHHHC
Confidence            489999999986542      5689999862     1 110  11      11111111111223456999999999999


Q ss_pred             eEEEEEEEcCCCceEEEEEEEEe
Q psy7036          82 GLYKVKAKNKMGEVAASINLNFS  104 (254)
Q Consensus        82 G~Y~C~~~~~~~~~~~~~~l~v~  104 (254)
                      |.|.|.+.+..+.....+.|.|.
T Consensus        81 G~Y~C~v~~~~~~~~~~v~L~V~  103 (106)
T cd05714          81 GRYRCEVIDGIEDEQDTVELEVR  103 (106)
T ss_pred             EEEEEEEEcCCCceEEEEEEEEE
Confidence            99999999887777778888875

Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.

>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R)

Probab=99.17  E-value=5.5e-10  Score=67.29  Aligned_cols=80  Identities=19%  Similarity=0.375  Sum_probs=55.5

Q ss_pred             CCeEEEEEEEeeCCC--CeEEEEECCEecccC---CcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcceEE
Q psy7036         127 GKRLLFECRIQADPA--PTVIWSHSGVQVKED---KRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNAT  201 (254)
Q Consensus       127 g~~~~l~C~~~~~~~--~~~~W~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~  201 (254)
                      |+.+.|.|.+.+.+.  ..+.|...+......   ...+... .......+.|.|.+++.+|+|.|+|.|.|..+.....
T Consensus         1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~-~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~   79 (86)
T cd05862           1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENRRSL-QEHTELSSTLTIENVTLSDLGRYTCTASSGQMIAKNS   79 (86)
T ss_pred             CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceecccccccc-cccceeeeEEEEecCCcccCEEEEEEEeecceEeccc
Confidence            678999999987654  468998876543211   1000000 1112234689999999999999999999988877777


Q ss_pred             EEEEEe
Q psy7036         202 ISLNFD  207 (254)
Q Consensus       202 ~~~~v~  207 (254)
                      ..|.|.
T Consensus        80 t~~~V~   85 (86)
T cd05862          80 TIVIVH   85 (86)
T ss_pred             EEEEEe
Confidence            777664

IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge

>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=99.17  E-value=3.4e-10  Score=70.40  Aligned_cols=84  Identities=18%  Similarity=0.258  Sum_probs=54.2

Q ss_pred             eCCCceeecCCCeEEEEEEEeeCCCCceEEEeCCE-----Eee---eC---------CcceEEEeecCCcceEEEEEEec
Q psy7036          13 QKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGET-----QLS---ED---------TRTVMKTTPIGTNKYLVALELDD   75 (254)
Q Consensus        13 ~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~-----~~~---~~---------~~~~~~~~~~~~~~~~~~l~i~~   75 (254)
                      +.+-+..+.+|++|.|.|.........++|||+..     .+.   ..         ...+.....+      ++|.|.+
T Consensus         3 ie~~p~~~~~G~~V~L~v~~~p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~n------gSL~I~~   76 (105)
T cd05774           3 IELVPPQVAEGENVLLLVHNLPENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYPN------GSLLIQN   76 (105)
T ss_pred             EeccCCcccCCCCEEEEecCCCCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeCC------CcEEEec
Confidence            34445578899999999976544455899999632     110   00         1111212222      2899999


Q ss_pred             cCCCCCeEEEEEEEcCCC-ceEEEEEEE
Q psy7036          76 VIETDAGLYKVKAKNKMG-EVAASINLN  102 (254)
Q Consensus        76 ~~~~d~G~Y~C~~~~~~~-~~~~~~~l~  102 (254)
                      ++.+|+|.|+|.+.+... .......|.
T Consensus        77 v~~~D~G~Y~~~v~~~~~~~~~~~v~l~  104 (105)
T cd05774          77 VTQKDTGFYTLQTITTNFQVEQATVHLQ  104 (105)
T ss_pred             CCcccCEEEEEEEEeCCccEEEEEEEEE
Confidence            999999999999998763 344444443

IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D

>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan

Probab=99.14  E-value=1.5e-09  Score=68.41  Aligned_cols=83  Identities=16%  Similarity=0.252  Sum_probs=54.1

Q ss_pred             CCCeEEEEEEEeeCC------------CCceEEEeC--CE---Eee---------eCCcceEEEeecCCcceEEEEEEec
Q psy7036          22 EGNRLIFECQLLCNP------------KPDIVWFRG--ET---QLS---------EDTRTVMKTTPIGTNKYLVALELDD   75 (254)
Q Consensus        22 ~g~~v~l~C~~~~~~------------~~~v~W~~~--~~---~~~---------~~~~~~~~~~~~~~~~~~~~l~i~~   75 (254)
                      .|++|+|.|......            .+.+.|+|-  ++   .+.         ...+.++...........++|+|.+
T Consensus         1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~n   80 (112)
T cd05900           1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEITE   80 (112)
T ss_pred             CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEee
Confidence            489999999986432            458999984  21   111         1111122222211123455899999


Q ss_pred             cCCCCCeEEEEEEEcCCCceEEEEEEEEe
Q psy7036          76 VIETDAGLYKVKAKNKMGEVAASINLNFS  104 (254)
Q Consensus        76 ~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~  104 (254)
                      ++.+|+|.|+|.+.++....+..+.|.|.
T Consensus        81 l~~sDsG~Y~C~V~~g~~~~~~~v~l~v~  109 (112)
T cd05900          81 LRSNDSGTYRCEVMHGIEDNYDTVEVQVK  109 (112)
T ss_pred             cccccCEEEEEEEecCCCCceeEEEEEEE
Confidence            99999999999999776666667777664

Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2)

Probab=99.14  E-value=4.2e-10  Score=68.38  Aligned_cols=71  Identities=20%  Similarity=0.286  Sum_probs=51.5

Q ss_pred             eecCCCeEEEEEE-Eee----CCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCc
Q psy7036         123 QEDDGKRLLFECR-IQA----DPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGE  197 (254)
Q Consensus       123 ~~~~g~~~~l~C~-~~~----~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~  197 (254)
                      .+..|....|.|. ..+    .+.+.+.|||++..+...... +....+.    ..|.|.++..+|+|.|+|.+.+..+.
T Consensus         6 ~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~~~~~-~~~~~~~----~~L~I~~v~~~D~G~YtC~~~~~~~g   80 (95)
T cd05897           6 ILFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDKDNEK-FYSLKGS----TYLHIIDVSLNDSGYYTCKLQFTHEG   80 (95)
T ss_pred             EeccccCcEEECCCHHHcccCCCCCcEEEccCCEECcCCCcc-eEecCCC----CEEEEEEcChhhCEEEEEEEEEeeCC
Confidence            4556888999997 223    356789999999988644322 2221221    16999999999999999999998764


Q ss_pred             c
Q psy7036         198 S  198 (254)
Q Consensus       198 ~  198 (254)
                      .
T Consensus        81 ~   81 (95)
T cd05897          81 K   81 (95)
T ss_pred             E
Confidence            3

Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins

Probab=99.14  E-value=4.2e-10  Score=71.49  Aligned_cols=78  Identities=18%  Similarity=0.286  Sum_probs=55.4

Q ss_pred             EeCCCceeecCCCeEEEEEEEeeCCCCceEEEeCCE---E---ee--------eCCcceEEEeecCCcceEEEEEEeccC
Q psy7036          12 TQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGET---Q---LS--------EDTRTVMKTTPIGTNKYLVALELDDVI   77 (254)
Q Consensus        12 ~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~---~---~~--------~~~~~~~~~~~~~~~~~~~~l~i~~~~   77 (254)
                      .+.|..+.+.+|++|+|.|.+.+.+...+.||+...   .   +.        ...++.+...   .....+.|.|.+++
T Consensus         2 ~q~~~~v~~~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~---~~~~~~~L~I~~~~   78 (109)
T cd04983           2 TQSPQSLSVQEGENVTLNCNYSTSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLD---KSRKSSSLHISAAQ   78 (109)
T ss_pred             eecCCceEEcCCCCEEEEEEECCCCccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEc---ccCCEEEEEECCCC
Confidence            456778889999999999999876778899998431   1   10        1122222211   12345689999999


Q ss_pred             CCCCeEEEEEEEcCC
Q psy7036          78 ETDAGLYKVKAKNKM   92 (254)
Q Consensus        78 ~~d~G~Y~C~~~~~~   92 (254)
                      .+|+|.|.|.+.+..
T Consensus        79 ~~DsG~Y~C~~~~~~   93 (109)
T cd04983          79 LSDSAVYFCALSESG   93 (109)
T ss_pred             HHHCEEEEEEEecCC
Confidence            999999999998654

IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4))

Probab=99.13  E-value=8.2e-10  Score=64.61  Aligned_cols=65  Identities=17%  Similarity=0.224  Sum_probs=49.3

Q ss_pred             EEEEEEEe-eCCCCeEEEEECCEecccCCcceEEEcCCCC--ceeeEEEEccCCCCCceeEEEEEEcCCCcc
Q psy7036         130 LLFECRIQ-ADPAPTVIWSHSGVQVKEDKRHKFSIDKDGH--SYFASLEIIDVTIEDAGKYKVTAKNELGES  198 (254)
Q Consensus       130 ~~l~C~~~-~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~  198 (254)
                      +.|.|... ++|++.+.||+++..+......    ..++.  ...+.|.|...+.+|.+.|+|.|.|+.+..
T Consensus         2 ~~L~C~s~~skP~a~i~W~k~~~~l~~~~~~----~~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~~   69 (80)
T cd05885           2 VELTCLSPRSKPAATLRWYRDRKELKGVISQ----QENGKTVSVSNTIRFPVDRKDDGAILSCEASHPALVS   69 (80)
T ss_pred             EEEEEeCCCccCCCeEEEEECCEECCCCccc----ccCCceEEEEEEEEEEeeeccCCcEEEEEEEChhhCC
Confidence            68999965 5788999999999998653211    11222  334579999889999999999999988754

Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.

>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0)

Probab=99.13  E-value=2.2e-09  Score=68.17  Aligned_cols=79  Identities=10%  Similarity=0.143  Sum_probs=52.5

Q ss_pred             CCCceeecCCCeEEEEEEEeeC----CCCceEEEe---------------CCEEee---eCCcceEEEeecCCcceEEEE
Q psy7036          14 KPQLRQEDEGNRLIFECQLLCN----PKPDIVWFR---------------GETQLS---EDTRTVMKTTPIGTNKYLVAL   71 (254)
Q Consensus        14 ~~~~~~v~~g~~v~l~C~~~~~----~~~~v~W~~---------------~~~~~~---~~~~~~~~~~~~~~~~~~~~l   71 (254)
                      .+..+.+..|++++|.|.....    +...++|.+               +|....   ...+.++....+. .....+|
T Consensus         4 ~~~ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~-~~~daSI   82 (116)
T cd05879           4 TDREVYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNP-SRKDGSI   82 (116)
T ss_pred             ccceEEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCC-CcCeeEE
Confidence            3456788999999999999653    345899932               233221   0111233222222 3455689


Q ss_pred             EEeccCCCCCeEEEEEEEcCCC
Q psy7036          72 ELDDVIETDAGLYKVKAKNKMG   93 (254)
Q Consensus        72 ~i~~~~~~d~G~Y~C~~~~~~~   93 (254)
                      .|.+++.+|+|.|+|.+.|...
T Consensus        83 ~I~nv~~sD~G~Y~C~v~n~p~  104 (116)
T cd05879          83 VIHNLDYTDNGTFTCDVKNPPD  104 (116)
T ss_pred             EEccCCcccCEEEEEEEEcCCC
Confidence            9999999999999999998665

Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.

>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG)

Probab=99.12  E-value=1.3e-09  Score=68.06  Aligned_cols=81  Identities=21%  Similarity=0.302  Sum_probs=52.0

Q ss_pred             CCeEEEEEEEeeCC---CCceEEEeCCE--Eee--e-----------CCcceEEEeecCCcceEEEEEEeccCCCCCeEE
Q psy7036          23 GNRLIFECQLLCNP---KPDIVWFRGET--QLS--E-----------DTRTVMKTTPIGTNKYLVALELDDVIETDAGLY   84 (254)
Q Consensus        23 g~~v~l~C~~~~~~---~~~v~W~~~~~--~~~--~-----------~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y   84 (254)
                      |++|+|.|...+..   ...+.|++...  .+.  .           ..+.++............+|+|.+++.+|+|.|
T Consensus         1 G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y   80 (100)
T cd05713           1 GEDAELPCHLSPKMSAEHMEVRWFRSQFSPAVHLYRDGQDQYGEQMPEYRGRTELLKDAIAEGSVALRIHNVRASDEGLY   80 (100)
T ss_pred             CCcEEEEeEEcCCCCCCeeEEEEEECCCceeEEEEcCCcccccccCccccceEEeecccccCCcEEEEEEcCChhhCEEE
Confidence            78999999986322   23688988541  110  0           001122221111223445899999999999999


Q ss_pred             EEEEEcCCCceEEEEEEEE
Q psy7036          85 KVKAKNKMGEVAASINLNF  103 (254)
Q Consensus        85 ~C~~~~~~~~~~~~~~l~v  103 (254)
                      +|.+.+..+..+..+.|+|
T Consensus        81 ~C~v~~~~~~~~~~i~l~v   99 (100)
T cd05713          81 TCFFQSDGFYEEATVELKV   99 (100)
T ss_pred             EEEEecCCcEEEEEEEEEE
Confidence            9999987776777777765

Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).

>smart00410 IG_like Immunoglobulin like

Probab=99.12  E-value=5.2e-09  Score=63.10  Aligned_cols=81  Identities=28%  Similarity=0.525  Sum_probs=60.2

Q ss_pred             eeecCCCeEEEEEEEeeCCCCeEEEEEC-CEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcceE
Q psy7036         122 RQEDDGKRLLFECRIQADPAPTVIWSHS-GVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNA  200 (254)
Q Consensus       122 ~~~~~g~~~~l~C~~~~~~~~~~~W~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~  200 (254)
                      ..+..|+.+.|.|.+.+.+.+.+.|+++ +..+.............    ...|.|.+++.+|.|.|.|.+.+..+....
T Consensus         4 ~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~   79 (86)
T smart00410        4 VTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGS----NSTLTISNVTPEDSGTYTCAATNSSGSASS   79 (86)
T ss_pred             EEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCC----eeEEEEEeeccccCeEEEEEEEcCCCeEEE
Confidence            4566899999999998887889999998 77665333323222211    248999999999999999999988776665


Q ss_pred             EEEEEE
Q psy7036         201 TISLNF  206 (254)
Q Consensus       201 ~~~~~v  206 (254)
                      .+.|.|
T Consensus        80 ~~~l~V   85 (86)
T smart00410       80 TTTLTV   85 (86)
T ss_pred             EEEEEE
Confidence            555554

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.

>smart00409 IG Immunoglobulin

Probab=99.12  E-value=5.2e-09  Score=63.10  Aligned_cols=81  Identities=28%  Similarity=0.525  Sum_probs=60.2

Q ss_pred             eeecCCCeEEEEEEEeeCCCCeEEEEEC-CEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcceE
Q psy7036         122 RQEDDGKRLLFECRIQADPAPTVIWSHS-GVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNA  200 (254)
Q Consensus       122 ~~~~~g~~~~l~C~~~~~~~~~~~W~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~  200 (254)
                      ..+..|+.+.|.|.+.+.+.+.+.|+++ +..+.............    ...|.|.+++.+|.|.|.|.+.+..+....
T Consensus         4 ~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~   79 (86)
T smart00409        4 VTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGS----NSTLTISNVTPEDSGTYTCAATNSSGSASS   79 (86)
T ss_pred             EEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCC----eeEEEEEeeccccCeEEEEEEEcCCCeEEE
Confidence            4566899999999998887889999998 77665333323222211    248999999999999999999988776665


Q ss_pred             EEEEEE
Q psy7036         201 TISLNF  206 (254)
Q Consensus       201 ~~~~~v  206 (254)
                      .+.|.|
T Consensus        80 ~~~l~V   85 (86)
T smart00409       80 TTTLTV   85 (86)
T ss_pred             EEEEEE
Confidence            555554

>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=99.12  E-value=5e-10  Score=67.85  Aligned_cols=73  Identities=15%  Similarity=0.272  Sum_probs=57.8

Q ss_pred             CCeeeecCCCeEEEEEE-EeeCCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCce-eEEEEEEcCCC
Q psy7036         119 PSIRQEDDGKRLLFECR-IQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAG-KYKVTAKNELG  196 (254)
Q Consensus       119 ~~~~~~~~g~~~~l~C~-~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G-~y~C~~~~~~~  196 (254)
                      ...+.+.+|+.+.|.|. ..+.|.|.+.|++++...... ..++....+|     .|.|.++..+|.| .|.|.|.|...
T Consensus        10 ~~~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~~i~~-~~Ri~~~~~G-----nL~fs~v~~~D~g~~Y~C~a~~~~~   83 (95)
T cd05845          10 IRPVEVEEGDSVVLPCNPPKSAVPLRIYWMNSDLLHITQ-DERVSMGQNG-----NLYFANVEEQDSHPDYICHAHFPGL   83 (95)
T ss_pred             cceeEEecCCCEEEEecCCCCCCCCEEEEECCCCccccc-cccEEECCCc-----eEEEEEEehhhCCCCeEEEEEcccc
Confidence            35677889999999997 689999999999876543332 3455555556     7999999999999 89999998754


Q ss_pred             c
Q psy7036         197 E  197 (254)
Q Consensus       197 ~  197 (254)
                      .
T Consensus        84 ~   84 (95)
T cd05845          84 R   84 (95)
T ss_pred             c
Confidence            3

Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A

Probab=99.11  E-value=7.1e-10  Score=66.16  Aligned_cols=71  Identities=24%  Similarity=0.597  Sum_probs=53.9

Q ss_pred             eeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCC-cceE
Q psy7036         122 RQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELG-ESNA  200 (254)
Q Consensus       122 ~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~-~~~~  200 (254)
                      ..+..|+.+.|.|.+.+.|...+.|++++..+.....              .+.+..+..+|.|.|+|.+.+..+ ..+.
T Consensus         9 ~~v~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~--------------~~~~~~~~~~~~g~y~C~~~~~~~~~~s~   74 (80)
T PF13895_consen    9 QSVEEGDSVTLTCSVSGNPPPQVQWYKNGSPINSSQN--------------GLFIPNVSPEDSGNYTCRASNGSGSNTST   74 (80)
T ss_dssp             SEEETTSEEEEEEEEESSSSSEEEEEETTEEEEEESS--------------EEEESSEEGGGTEEEEEEEEETTEEEEEE
T ss_pred             eEEeCCCcEEEEEEEEcccceeeeeeeeeeeeeeeee--------------eeeeeeeccccCEEEEEEEEeCCCCeEee
Confidence            3467899999999999888899999998877652221              266678889999999999999654 3345


Q ss_pred             EEEEEE
Q psy7036         201 TISLNF  206 (254)
Q Consensus       201 ~~~~~v  206 (254)
                      ++.|.|
T Consensus        75 ~~~v~V   80 (80)
T PF13895_consen   75 SVNVTV   80 (80)
T ss_dssp             EEEEEE
T ss_pred             eEEeeC
Confidence            555543

...

>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs

Probab=99.11  E-value=5.5e-10  Score=63.54  Aligned_cols=63  Identities=30%  Similarity=0.524  Sum_probs=45.4

Q ss_pred             CCeEEEEEEE-eeCCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEE
Q psy7036         127 GKRLLFECRI-QADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTA  191 (254)
Q Consensus       127 g~~~~l~C~~-~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~  191 (254)
                      |+.++|.|.+ .+.+...+.|++++.............  +.......|.|.+++.+|+|.|+|.|
T Consensus         1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~--~~~~~~~~L~i~~v~~~d~G~Y~C~v   64 (64)
T PF00047_consen    1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPEGSTTNRST--NSVSSTSRLTISNVTPEDSGTYTCVV   64 (64)
T ss_dssp             TSEEEEEEEEEESSSTSEEEEEETTTTTSEEEEEEEEE--TTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred             CCeEEEEeecCCCCCCcEEEEEECCccccCcceeEeec--ccceeeeEEEEccCCHHHCEEEEEEC
Confidence            7889999999 667778999999987654333222221  22211124999999999999999986

; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....

>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)

Probab=99.10  E-value=2.6e-09  Score=67.48  Aligned_cols=83  Identities=14%  Similarity=0.368  Sum_probs=55.2

Q ss_pred             CCCeEEEEEEEeeCC----------CCceEEEeCC--EEe----ee--------CCcceEEEeecCCcceEEEEEEeccC
Q psy7036          22 EGNRLIFECQLLCNP----------KPDIVWFRGE--TQL----SE--------DTRTVMKTTPIGTNKYLVALELDDVI   77 (254)
Q Consensus        22 ~g~~v~l~C~~~~~~----------~~~v~W~~~~--~~~----~~--------~~~~~~~~~~~~~~~~~~~l~i~~~~   77 (254)
                      .|++|+|.|.....+          ...+.|||..  ...    ..        ..+.++...........++|+|.+++
T Consensus         1 ~G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~   80 (110)
T cd05878           1 LSSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLR   80 (110)
T ss_pred             CCCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCC
Confidence            389999999996533          3569999852  111    01        11112222111223345689999999


Q ss_pred             CCCCeEEEEEEEcCCCceEEEEEEEEe
Q psy7036          78 ETDAGLYKVKAKNKMGEVAASINLNFS  104 (254)
Q Consensus        78 ~~d~G~Y~C~~~~~~~~~~~~~~l~v~  104 (254)
                      .+|+|.|.|.+.......+..+.|.|.
T Consensus        81 ~sD~G~Y~C~v~~~~~~~~~~v~l~V~  107 (110)
T cd05878          81 SSDSGVYRCEVMHGIEDEQDTVPLEVT  107 (110)
T ss_pred             hhhCEEEEEEEEeCCCcceEEEEEEEE
Confidence            999999999999876667777888775

Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi

>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)

Probab=99.10  E-value=2.6e-09  Score=63.95  Aligned_cols=71  Identities=23%  Similarity=0.409  Sum_probs=49.5

Q ss_pred             EEEEEEEee-CCCCeEEEEECCEecccCCcceEEEcCCCC--ceeeEEEEccCCCCCceeEEEEEEcCCCcceEE
Q psy7036         130 LLFECRIQA-DPAPTVIWSHSGVQVKEDKRHKFSIDKDGH--SYFASLEIIDVTIEDAGKYKVTAKNELGESNAT  201 (254)
Q Consensus       130 ~~l~C~~~~-~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~  201 (254)
                      +.|.|.+.+ .|.+.+.|++++..+....... ....++.  ...+.|.|.....+|.|.|+|.|.|........
T Consensus         2 ~~L~C~v~g~~P~~~v~W~~~g~~l~~~~~~~-~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~l~~~~~   75 (82)
T cd05759           2 YNLTCRARGAKPAAEIIWFRDGEVLDGATYSK-ELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNEALPTGKE   75 (82)
T ss_pred             EEEEEEEeCccCCCEEEEEECCEEccCceeee-eEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCccCCCCcE
Confidence            689999987 5778999999999875432211 1122222  234578888777888899999999987654333

Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP)

Probab=99.09  E-value=2.4e-09  Score=67.59  Aligned_cols=81  Identities=15%  Similarity=0.311  Sum_probs=54.8

Q ss_pred             CCCeEEEEEEEeeCC------CCceEEEeCCE------E--eeeC--------CcceEEEeecCCcceEEEEEEeccCCC
Q psy7036          22 EGNRLIFECQLLCNP------KPDIVWFRGET------Q--LSED--------TRTVMKTTPIGTNKYLVALELDDVIET   79 (254)
Q Consensus        22 ~g~~v~l~C~~~~~~------~~~v~W~~~~~------~--~~~~--------~~~~~~~~~~~~~~~~~~l~i~~~~~~   79 (254)
                      .|++|+|.|.....+      ...+.|+|...      .  +...        ...+....  ......++|.|.+++.+
T Consensus         1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~--~~~~~~~sL~I~~v~~~   78 (106)
T cd05877           1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLR--RAHDLDASLVITDLRLE   78 (106)
T ss_pred             CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEec--CCCCCcEEEEEccCChH
Confidence            489999999986542      35699998531      1  1100        01112111  11123458999999999


Q ss_pred             CCeEEEEEEEcCCCceEEEEEEEEe
Q psy7036          80 DAGLYKVKAKNKMGEVAASINLNFS  104 (254)
Q Consensus        80 d~G~Y~C~~~~~~~~~~~~~~l~v~  104 (254)
                      |+|.|.|.+.+..+.....+.|.|.
T Consensus        79 DsG~Y~C~v~~~~~~~~~~~~l~v~  103 (106)
T cd05877          79 DYGRYRCEVIDGLEDESVVVALRLR  103 (106)
T ss_pred             HCEEEEEEEEecccceEEEEEEEEE
Confidence            9999999999888888888888775

Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4

Probab=99.09  E-value=1.2e-09  Score=66.47  Aligned_cols=76  Identities=16%  Similarity=0.207  Sum_probs=51.4

Q ss_pred             eeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcceE------------EEcCCC-CceeeEEEEccCCCCCceeEE
Q psy7036         122 RQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKF------------SIDKDG-HSYFASLEIIDVTIEDAGKYK  188 (254)
Q Consensus       122 ~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~------------~~~~~~-~~~~~~l~i~~~~~~d~G~y~  188 (254)
                      +.+..|+.++|.|...+.+.+.+.|+++++........++            ....++ ......|+|.+++.+|+|.|.
T Consensus         2 v~~~~G~~VtL~C~~s~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~sDsgtY~   81 (94)
T cd07690           2 VLGKKGDTAELPCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKIEDSDTYI   81 (94)
T ss_pred             eEeeCCCCEEEEEEeCCCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCCHHHCEEEE
Confidence            3466899999999998888889999977633211111111            111100 112347999999999999999


Q ss_pred             EEEEcCCCc
Q psy7036         189 VTAKNELGE  197 (254)
Q Consensus       189 C~~~~~~~~  197 (254)
                      |.+.|..+.
T Consensus        82 C~v~~~~~~   90 (94)
T cd07690          82 CEVEDKKEE   90 (94)
T ss_pred             EEECCccce
Confidence            999887554

Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>PHA03376 BARF1; Provisional

Probab=99.09  E-value=3.5e-09  Score=70.64  Aligned_cols=121  Identities=18%  Similarity=0.225  Sum_probs=68.7

Q ss_pred             eeeecCCCeEEEEEEEee---CCCCeEEEEECCE----ecc---c--------CCcceEEEcCCCCceeeEEEEccCCCC
Q psy7036         121 IRQEDDGKRLLFECRIQA---DPAPTVIWSHSGV----QVK---E--------DKRHKFSIDKDGHSYFASLEIIDVTIE  182 (254)
Q Consensus       121 ~~~~~~g~~~~l~C~~~~---~~~~~~~W~~~~~----~~~---~--------~~~~~~~~~~~~~~~~~~l~i~~~~~~  182 (254)
                      .+....|+.+.|.|....   .....+.|+|.+.    .+-   .        ..+.+.....+.  ...+|.|.+++.+
T Consensus        20 pVta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~~--gnvsLvI~~l~lS   97 (221)
T PHA03376         20 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSA--NTFFLVVTAANIS   97 (221)
T ss_pred             chhheeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEecC--CeEEEEEEeeeec
Confidence            344557999999999652   2345799999432    110   0        001111111111  1248999999999


Q ss_pred             CceeEEEEEEcCCCcceEEEEEEEecCCCCCCCCCCCCeeecCCccccccCCCCcEEEEEEEeccCCCceeC
Q psy7036         183 DAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLVGEPEPTISW  254 (254)
Q Consensus       183 d~G~y~C~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~l~C~~~~~p~p~~~W  254 (254)
                      |.|.|+|.+........+.-.+++..          +-.+...........-+ ...+.|.+.|+|.|.++|
T Consensus        98 DdGtY~C~fQkge~~~~k~ehLt~V~----------~~~Lsv~a~~~dFp~~~-~~~i~C~sggfP~P~~~W  158 (221)
T PHA03376         98 HDGNYLCRMKLGETEVTKQEHLSVVK----------PLTLSVHSERSQFPDFS-VLTVTCTVNAFPHPHVQW  158 (221)
T ss_pred             CCceEEEEEEcCCCceeeeeeeeeee----------cceEEEEeccccCCCCC-eeEEEEecCCcCCchhee
Confidence            99999999987543332222222210          00111111111112244 789999988999999999

>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C

Probab=99.08  E-value=4.1e-10  Score=66.30  Aligned_cols=74  Identities=22%  Similarity=0.444  Sum_probs=50.5

Q ss_pred             CCeeEeCCCceeecCCCeEEEEEEEeeCC-CCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEE
Q psy7036           8 APSFTQKPQLRQEDEGNRLIFECQLLCNP-KPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKV   86 (254)
Q Consensus         8 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C   86 (254)
                      +|.+...+.......+. ++|.|.+.+.+ .+.++|+ +........       ........+.|.|.++..+|.|.|+|
T Consensus         1 kP~I~~~~~~~~~~~~~-~~l~C~~~~~~~~~~~~W~-~~~~~~~~~-------~~~~~~~~~~L~i~~v~~~~~g~y~C   71 (75)
T PF13927_consen    1 KPQISVPPPPVVTSGGS-VTLTCSAEGGPPPPSISWY-DSNPSFNSN-------SRGSSSSNSTLTISNVTRSDNGTYTC   71 (75)
T ss_dssp             ESEEEEESTSEEETTEE-EEEEEEESSEESSEEEEEE-TEEEEEEEE-------EEEEEEEEEEEEESSCCGGGTEEEEE
T ss_pred             CCEEEEcCCCcEeecee-EEEEEEEccccCCeEEEEE-ecCCceeee-------eeeccceeeEEEEccCCHHhCcEEEE
Confidence            47777777766555544 99999998765 8899999 111111110       11112233489999999999999999


Q ss_pred             EEEc
Q psy7036          87 KAKN   90 (254)
Q Consensus        87 ~~~~   90 (254)
                      .|.|
T Consensus        72 ~a~N   75 (75)
T PF13927_consen   72 IASN   75 (75)
T ss_dssp             EEEE
T ss_pred             EEEC
Confidence            9976

...

>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively)

Probab=99.08  E-value=3.5e-09  Score=65.34  Aligned_cols=84  Identities=15%  Similarity=0.285  Sum_probs=53.6

Q ss_pred             CeeeecCCCeEEEEEEEeeCCCCeEEEEECCEec-c--c---CCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEc
Q psy7036         120 SIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQV-K--E---DKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKN  193 (254)
Q Consensus       120 ~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~-~--~---~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~  193 (254)
                      ....+.+|+.+.|.|.+.+.+.+.+.|++.+..+ .  .   ....++....... ....|.|.+++.+|+|.|.|.+.+
T Consensus         5 ~~~~v~~G~~v~L~C~~~~~~~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~~~-~~~~L~I~~v~~~DsG~Y~C~~~~   83 (95)
T cd05717           5 QDVTVVEGGTATLKCRVKNNDNSSLQWSNPNQQTLYFNDKRALRDNRIQLVNFSA-NELSISISNVSLSDEGRYTCSLYT   83 (95)
T ss_pred             CcEEEcCCCCEEEEEEECCCCCceEEEeCCCCcEEEeccccccccCcEEEEcCCC-CeeEEEEccCCcccCEEEEEEEec
Confidence            3456788999999999988888899998632211 0  0   0111222211111 123799999999999999999987


Q ss_pred             CCCcceEEEEEE
Q psy7036         194 ELGESNATISLN  205 (254)
Q Consensus       194 ~~~~~~~~~~~~  205 (254)
                      ... ...+..|.
T Consensus        84 ~~~-~~~~~~~~   94 (95)
T cd05717          84 MPV-QTAKATVT   94 (95)
T ss_pred             CCC-ceEEEEEE
Confidence            642 34444443

Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form

>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin

Probab=99.08  E-value=2.6e-09  Score=65.00  Aligned_cols=79  Identities=22%  Similarity=0.304  Sum_probs=53.6

Q ss_pred             eeecCCCeEEEEEEEeeCCCCeEEEEECCE--eccc--CCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEc-CCC
Q psy7036         122 RQEDDGKRLLFECRIQADPAPTVIWSHSGV--QVKE--DKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKN-ELG  196 (254)
Q Consensus       122 ~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~--~~~~--~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~-~~~  196 (254)
                      +...+|+.+.|.|.. +.|.+.+.|++...  ....  ....+.....      ..|.|.++..+|+|.|.|.+.+ ..+
T Consensus         6 ~~~~eG~~v~L~C~~-~~p~p~v~Wykq~~g~~~~~~~~~~~r~~~~~------~~L~I~~~~~~DsG~Y~C~a~~~~~~   78 (91)
T cd05871           6 VYGVENNSTFLECLP-KSPQASVKWLFQRGGDQRKEEVKTEERLIHTE------RGLLLRSLQRSDAGVYTCTAVEHSFS   78 (91)
T ss_pred             EEEecCCcEEEEEEC-CCCCceEEEEEECCCCCccccccccccEEEec------CeEEEeeCChhHCEEEEEEEEccCCe
Confidence            456689999999996 57888999998432  2111  0111222221      2699999999999999999985 555


Q ss_pred             cceEEEEEEEe
Q psy7036         197 ESNATISLNFD  207 (254)
Q Consensus       197 ~~~~~~~~~v~  207 (254)
                      .....++|.|.
T Consensus        79 ~~~~~~~l~v~   89 (91)
T cd05871          79 QTLAKYTLHVI   89 (91)
T ss_pred             EEEEEEEEEEe
Confidence            45556666654

Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula

>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins

Probab=99.07  E-value=9.1e-10  Score=67.21  Aligned_cols=74  Identities=14%  Similarity=0.189  Sum_probs=55.5

Q ss_pred             CCeeEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEE
Q psy7036           8 APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVK   87 (254)
Q Consensus         8 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~   87 (254)
                      .|.+...|.. .|.+|++|+|+|... .+...+.|+|+|........        ......+.+.|.+++.+|+|.|+|.
T Consensus         2 kP~L~a~p~~-vV~~G~~VtL~C~~~-~~~~~f~l~k~g~~~~~~~~--------~~~~~~~~f~i~~v~~~~~G~Y~C~   71 (91)
T cd05751           2 KPSLWAEPSS-VVPLGKPVTLRCQGP-YGAVEYRLYREGSTFAVKKP--------PEPQNKAKFFIPSMKREHAGRYRCY   71 (91)
T ss_pred             CCEEEecCCC-ccCCCCcEEEEEecC-CCCCEEEEEECCCCcccccc--------CCCceeEEEEccCCChhHCEEEEEE
Confidence            5777777754 688999999999885 66778999999875432110        0112233799999999999999999


Q ss_pred             EEcC
Q psy7036          88 AKNK   91 (254)
Q Consensus        88 ~~~~   91 (254)
                      +.+.
T Consensus        72 ~~~~   75 (91)
T cd05751          72 YRSG   75 (91)
T ss_pred             EECC
Confidence            9875

Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),

>KOG3515|consensus

Probab=99.07  E-value=1.7e-09  Score=87.64  Aligned_cols=233  Identities=14%  Similarity=0.197  Sum_probs=129.2

Q ss_pred             CCCCCCeeEeCCCceeecCCCeEEEEEEEe--eCCCCceEEEeCCEEeeeCCc--ceEEEeecCCc-ceEEEEEEeccCC
Q psy7036           4 AEDFAPSFTQKPQLRQEDEGNRLIFECQLL--CNPKPDIVWFRGETQLSEDTR--TVMKTTPIGTN-KYLVALELDDVIE   78 (254)
Q Consensus         4 ~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~--~~~~~~v~W~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~l~i~~~~~   78 (254)
                      .+.++|.-...........+..+.+.|.+.  +.|.+.++|+.++........  ........+.. ...+.+.+...+.
T Consensus        93 ~v~~~pa~~~~~~e~~~~~~~vvqi~c~~~~~~~P~~nlrW~~n~r~e~~~~~~~~~~~~~a~gss~t~~s~l~~~v~Rk  172 (741)
T KOG3515|consen   93 DVDYPPACLPELGEIFQVDKGVVQIICSAKVAGRPNPNLRWGFNNRAELNAVNQRGRVGAGALGSSYTEPSLLKQTVSRK  172 (741)
T ss_pred             ccccCccccccccchhhhcCCeEEEEEeecCCCCCCcceeeeeccEEeecccCCcccccccccCceeccccceeeEEEEe
Confidence            344445433333344556788999999763  467889999998875543321  11111111111 2234688888889


Q ss_pred             CCCeEEEEEEEcCCC---ceEEEEEEEEeccccCCCCCccccCCCeeeecCCCeEEEEEEEe-eCCCCeEEEEECCEecc
Q psy7036          79 TDAGLYKVKAKNKMG---EVAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQ-ADPAPTVIWSHSGVQVK  154 (254)
Q Consensus        79 ~d~G~Y~C~~~~~~~---~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~-~~~~~~~~W~~~~~~~~  154 (254)
                      .+.|.|+|.+.+...   ..-....+.|...   ................+|..+.|.|.+. ++|.+.++|+++.....
T Consensus       173 a~~g~~tC~A~nr~s~~l~~~~~~~i~v~~~---~~~~~~~~~~~~qsF~~g~~inlvc~~~gg~P~~~~~w~~~s~~~~  249 (741)
T KOG3515|consen  173 ADNGNYTCPANNRNSPGLSFAKQLTIIVEAP---CKGIGITGAQEQQSFTEGQTINLVCNAQGGNPSQQQTWYKDSRPQS  249 (741)
T ss_pred             cCCceeEcccccccCccccccceeEeecccc---cccceecchhhcCcccccceEEEEehhhcCCcchhhhhccccccch
Confidence            999999999998532   2223333443211   0111111222224567899999999754 57888999999887665


Q ss_pred             cCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcceEEEEEEEecCCCCCCCCCCCCeeecCCccccccCC
Q psy7036         155 EDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDD  234 (254)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~g  234 (254)
                      ...  .+....++....+.+.+..-+.++.-...|.+.| ..  ..+..+.+...  +.     .  ....+.......|
T Consensus       250 ~~s--l~~~~~sg~~v~~~~~~~~~r~~~~~~~kc~a~n-~~--~~~~~tav~~~--~~-----~--~~Ist~~~~ls~g  315 (741)
T KOG3515|consen  250 ESS--LLSQEPSGDTVSSTLVLRVGRQDLQAQLKCKASN-LL--AASQITAVQVK--PT-----A--VPISTSDSGLSSG  315 (741)
T ss_pred             hhh--cccCCCCCCcccccccccccccchhhhhhccccC-cc--ccceeeecccc--cc-----c--ccccCcccccccc
Confidence            431  1222223333333444444444445578899988 12  22222222211  00     0  1112222235667


Q ss_pred             CCcEEEEEEEe-ccCCCceeC
Q psy7036         235 LNDIVIECRLV-GEPEPTISW  254 (254)
Q Consensus       235 ~~~~~l~C~~~-~~p~p~~~W  254 (254)
                      + .+.+.|... ++|.+.+.|
T Consensus       316 ~-s~r~~c~~sss~p~~~i~w  335 (741)
T KOG3515|consen  316 R-SARSSCVSSSSKPPAHIAW  335 (741)
T ss_pred             c-ccccceeccCCCCccceee
Confidence            7 889999885 457777887

>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain

Probab=99.03  E-value=2.3e-09  Score=68.08  Aligned_cols=77  Identities=16%  Similarity=0.323  Sum_probs=53.0

Q ss_pred             EeCCCceeecCCCeEEEEEEEeeCCCCceEEEeCCE--E---ee-----------eCCcceEEEeecCCcceEEEEEEec
Q psy7036          12 TQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGET--Q---LS-----------EDTRTVMKTTPIGTNKYLVALELDD   75 (254)
Q Consensus        12 ~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~--~---~~-----------~~~~~~~~~~~~~~~~~~~~l~i~~   75 (254)
                      .+.|....+.+|++|+|.|.+.+ +...+.|||...  .   +.           .....++.....  ......|.|.+
T Consensus         2 ~Q~p~~~~v~~G~~v~l~C~~~~-~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~--~~~~~~L~I~~   78 (110)
T cd05899           2 TQSPRYLIKGRGQSVTLRCSQTS-GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRP--SLTRSSLTIKS   78 (110)
T ss_pred             EECCCceEEcCCCcEEEEEEECC-CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECc--CCCccEEEECC
Confidence            46777889999999999999976 667899998532  1   10           000111111111  11345899999


Q ss_pred             cCCCCCeEEEEEEEcC
Q psy7036          76 VIETDAGLYKVKAKNK   91 (254)
Q Consensus        76 ~~~~d~G~Y~C~~~~~   91 (254)
                      ++.+|+|.|.|.+.+.
T Consensus        79 ~~~~Dsg~Y~Ca~~~~   94 (110)
T cd05899          79 AEPEDSAVYLCASSLG   94 (110)
T ss_pred             CChhhCEEEEEEeeCC
Confidence            9999999999998764

IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1)

Probab=99.02  E-value=5e-09  Score=63.90  Aligned_cols=79  Identities=18%  Similarity=0.278  Sum_probs=56.1

Q ss_pred             eeecCCCeEEEEEEEee-----------CCCCeEEEEECCEecccCCc-----ceEEEcCCCCceeeEEEEccCCCCCce
Q psy7036         122 RQEDDGKRLLFECRIQA-----------DPAPTVIWSHSGVQVKEDKR-----HKFSIDKDGHSYFASLEIIDVTIEDAG  185 (254)
Q Consensus       122 ~~~~~g~~~~l~C~~~~-----------~~~~~~~W~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~i~~~~~~d~G  185 (254)
                      ..+.+|+.+.|.|....           .....+.|+|++........     .++.....      .|.|.++..+|+|
T Consensus        10 ~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~~~~~------~Lwf~Pa~~eDSG   83 (104)
T cd05896          10 YMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMSKEED------SIWFRPAELQDSG   83 (104)
T ss_pred             EEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEEEeCC------EEEEEeCChhhCe
Confidence            45778999999999511           11236999999755443221     23333333      7999999999999


Q ss_pred             eEEEEEEcCCCcceEEEEEEE
Q psy7036         186 KYKVTAKNELGESNATISLNF  206 (254)
Q Consensus       186 ~y~C~~~~~~~~~~~~~~~~v  206 (254)
                      .|+|.+.|.....+.++.|+|
T Consensus        84 ~Y~C~~rN~t~C~~~~i~l~V  104 (104)
T cd05896          84 LYTCVLRNSTYCMKVSMSLTV  104 (104)
T ss_pred             EEEEEECCCCcceEEEEEEEC
Confidence            999999998877777766553

Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of

>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=99.00  E-value=6.4e-09  Score=64.64  Aligned_cols=78  Identities=10%  Similarity=0.165  Sum_probs=51.2

Q ss_pred             CeEEEEEEEeeCC---CCceEEEeCCEE----e--e---------eCCcceEEEeecCCcceEEEEEEeccCCCCCeEEE
Q psy7036          24 NRLIFECQLLCNP---KPDIVWFRGETQ----L--S---------EDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYK   85 (254)
Q Consensus        24 ~~v~l~C~~~~~~---~~~v~W~~~~~~----~--~---------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~   85 (254)
                      ++|+|.|......   ...+.|+|....    +  .         ...+.++......  ....+|.|.+++.+|+|.|.
T Consensus         1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~--~~~~sL~I~~v~~~D~G~Y~   78 (98)
T cd05718           1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSS--LEDATISISNLRLEDEGNYI   78 (98)
T ss_pred             CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCC--CCceEEEEccCCcccCEEEE
Confidence            5799999987543   347999985421    1  0         1111222222111  13458999999999999999


Q ss_pred             EEEEc-CCCceEEEEEEEE
Q psy7036          86 VKAKN-KMGEVAASINLNF  103 (254)
Q Consensus        86 C~~~~-~~~~~~~~~~l~v  103 (254)
                      |.+.. ..|.....+.|.|
T Consensus        79 C~v~~~~~g~~~~~~~l~V   97 (98)
T cd05718          79 CEFATFPQGNRQKVTTLTV   97 (98)
T ss_pred             EEEEeCCCCcEEEEEEEEe
Confidence            99874 5677777777776

Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c

>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=98.98  E-value=2e-08  Score=59.02  Aligned_cols=76  Identities=12%  Similarity=0.098  Sum_probs=52.3

Q ss_pred             EEEEEEEee-CCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCc-ceEEEEEEE
Q psy7036         130 LLFECRIQA-DPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGE-SNATISLNF  206 (254)
Q Consensus       130 ~~l~C~~~~-~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~-~~~~~~~~v  206 (254)
                      +.|.|.+.| .|.+.|.|++++..+...... ......++...++|.|..-..+|...|+|+|.|+.-. ...+..|.|
T Consensus         2 ~~L~C~s~gSkP~A~I~W~k~~~~l~~~~~~-~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~~~l~~~~~~~~L~V   79 (82)
T cd05883           2 IELNCTAMASKPAATIRWFKGNKELTGKSTV-EETWSRMFTVTSQLMLKVTKEDDGVPVICLVDHPAVKDLQTQRYLEV   79 (82)
T ss_pred             EEEEEEecCCCCCCEEEEEECCEECcCcccc-eeccCCCcEEEEEEEEECchhhCCCEEEEEEcCcccCCceeeEEEEE
Confidence            689999776 678899999999998654221 1123344556678888766666666999999997643 244444544

Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.

>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan

Probab=98.98  E-value=1.3e-08  Score=63.86  Aligned_cols=83  Identities=17%  Similarity=0.333  Sum_probs=55.9

Q ss_pred             CCCeEEEEEEEeeCC-------CCceEEEeCC-----EEe------------eeCCcceEEEeecCCcceEEEEEEeccC
Q psy7036          22 EGNRLIFECQLLCNP-------KPDIVWFRGE-----TQL------------SEDTRTVMKTTPIGTNKYLVALELDDVI   77 (254)
Q Consensus        22 ~g~~v~l~C~~~~~~-------~~~v~W~~~~-----~~~------------~~~~~~~~~~~~~~~~~~~~~l~i~~~~   77 (254)
                      .|++|+|.|...-.|       .+.+.|.|..     ...            ....+.+............++|.|.+++
T Consensus         1 ~~~~v~LpC~~~~~p~~~~~~~~~~I~W~k~~~~~~~~~~~v~v~~~~~~~~~~~y~gRvsl~~~~~~~~~asL~i~nv~   80 (110)
T cd05902           1 LSSSVLLPCVFTLPPSASSPPEGPRIKWTKLRPASGQKQRPVLVARDNVVRVAKAFQGRVSLPGYPKNRYNASLVLSRLR   80 (110)
T ss_pred             CCCcEEEeeEEEcCccccCCCCCCEEEEEEeCCCCCceEEEEEECCCCcEEEchhcccEEEeecCCCCCceEEEEECCCC
Confidence            378999999965222       4689999741     111            1122233333333333456799999999


Q ss_pred             CCCCeEEEEEEEcCCCceEEEEEEEEe
Q psy7036          78 ETDAGLYKVKAKNKMGEVAASINLNFS  104 (254)
Q Consensus        78 ~~d~G~Y~C~~~~~~~~~~~~~~l~v~  104 (254)
                      .+|+|.|.|.+.......+..+.|.|.
T Consensus        81 ~~D~G~Y~C~v~~g~~~~~~~v~L~V~  107 (110)
T cd05902          81 YSDSGTYRCEVVLGINDEQDTVPLEVT  107 (110)
T ss_pred             HHHCEEEEEEEEECCcccEEEEEEEEE
Confidence            999999999999866566777777775

Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen

>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=98.97  E-value=2e-08  Score=59.04  Aligned_cols=76  Identities=17%  Similarity=0.250  Sum_probs=52.5

Q ss_pred             EEEEEEEee-CCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcCCCc-eEEEEEEEE
Q psy7036          26 LIFECQLLC-NPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGE-VAASINLNF  103 (254)
Q Consensus        26 v~l~C~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~-~~~~~~l~v  103 (254)
                      +.|.|.+.| .|.+.|+||+++..+......  .....++....++|.|..-..+|...|+|++.|..-. ......|.|
T Consensus         2 ~~L~C~s~gSkP~A~I~W~k~~~~l~~~~~~--~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~~~l~~~~~~~~L~V   79 (82)
T cd05883           2 IELNCTAMASKPAATIRWFKGNKELTGKSTV--EETWSRMFTVTSQLMLKVTKEDDGVPVICLVDHPAVKDLQTQRYLEV   79 (82)
T ss_pred             EEEEEEecCCCCCCEEEEEECCEECcCcccc--eeccCCCcEEEEEEEEECchhhCCCEEEEEEcCcccCCceeeEEEEE
Confidence            689999976 688999999999988654221  1122334455668888766677777999999986532 344555554

Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.

>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins

Probab=98.96  E-value=9e-09  Score=63.16  Aligned_cols=73  Identities=19%  Similarity=0.327  Sum_probs=48.7

Q ss_pred             CCeEEEEEEEeeCCCCceEEEeCCEEeee----------------CCcceEEEeecCCcceEEEEEEeccCCCCCeEEEE
Q psy7036          23 GNRLIFECQLLCNPKPDIVWFRGETQLSE----------------DTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKV   86 (254)
Q Consensus        23 g~~v~l~C~~~~~~~~~v~W~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C   86 (254)
                      |++|+|.|.........+.|+++......                ....+.....      ..+|.|.+++.+|+|.|+|
T Consensus         1 G~~VtL~c~~~~~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~------~~sL~I~~l~~~DsG~Y~c   74 (92)
T cd05741           1 GESVTLPVSNLPENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIYP------NGSLLIQNLTKEDSGTYTL   74 (92)
T ss_pred             CCcEEEEcccCCCCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEcC------CceEEEccCCchhcEEEEE
Confidence            78999999987656668999986532110                0111122211      1389999999999999999


Q ss_pred             EEEcCCCc-eEEEEEE
Q psy7036          87 KAKNKMGE-VAASINL  101 (254)
Q Consensus        87 ~~~~~~~~-~~~~~~l  101 (254)
                      .+....+. ....+.|
T Consensus        75 ~v~~~~~~~~~~~~~l   90 (92)
T cd05741          75 QIISTNGVTENAKFFL   90 (92)
T ss_pred             EEEcCCCcEEEEEEEE
Confidence            99877643 3334443

Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf

>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA)

Probab=98.95  E-value=2e-08  Score=64.07  Aligned_cols=79  Identities=15%  Similarity=0.175  Sum_probs=50.5

Q ss_pred             CCCceeecCCCeEEEEEEEeeCC----CCceEEEeC----CEE--e-ee--------CCcc--eEEEeecCCcceEEEEE
Q psy7036          14 KPQLRQEDEGNRLIFECQLLCNP----KPDIVWFRG----ETQ--L-SE--------DTRT--VMKTTPIGTNKYLVALE   72 (254)
Q Consensus        14 ~~~~~~v~~g~~v~l~C~~~~~~----~~~v~W~~~----~~~--~-~~--------~~~~--~~~~~~~~~~~~~~~l~   72 (254)
                      .+..+.+.+|++++|.|.....+    ...+.||+.    +..  + ..        ..++  ++.... ......++|.
T Consensus         4 ~~~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~-~~~~~~~sL~   82 (115)
T cd05880           4 TSKEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDG-NIMRRDASIL   82 (115)
T ss_pred             cCceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEec-CCcCCceEEE
Confidence            45677899999999999986432    246999852    211  1 00        0111  111111 1123345899


Q ss_pred             EeccCCCCCeEEEEEEEcCCC
Q psy7036          73 LDDVIETDAGLYKVKAKNKMG   93 (254)
Q Consensus        73 i~~~~~~d~G~Y~C~~~~~~~   93 (254)
                      |.+++.+|+|.|.|.+.+...
T Consensus        83 I~~v~~~D~G~Y~C~v~~~~~  103 (115)
T cd05880          83 IWQLQPTDNGTYTCQVKNPPD  103 (115)
T ss_pred             EeeCChhhCEEEEEEEEeCCC
Confidence            999999999999999997654

Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.

>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain

Probab=98.95  E-value=8.2e-09  Score=65.07  Aligned_cols=78  Identities=17%  Similarity=0.256  Sum_probs=53.0

Q ss_pred             eEeCCCceeecCCCeEEEEEEEeeCC-CCceEEEeCC--E---EeeeC-------CcceEEEeecCCcceEEEEEEeccC
Q psy7036          11 FTQKPQLRQEDEGNRLIFECQLLCNP-KPDIVWFRGE--T---QLSED-------TRTVMKTTPIGTNKYLVALELDDVI   77 (254)
Q Consensus        11 ~~~~~~~~~v~~g~~v~l~C~~~~~~-~~~v~W~~~~--~---~~~~~-------~~~~~~~~~~~~~~~~~~l~i~~~~   77 (254)
                      +.+.|....+.+|++|+|.|.+.+.. ...+.|||..  +   .+...       ...++...   .......|.|.+++
T Consensus         3 v~Q~p~~~~v~~G~~v~L~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~---~~~~~~~L~I~~~~   79 (106)
T cd04980           3 LTQSPATLSVSPGESATISCKASQSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGS---GSGTDFTLTISRVE   79 (106)
T ss_pred             EEECCCcEEECCCCCEEEEEEECCCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEe---ccCCEEEEEECCCC
Confidence            45678888999999999999997554 5679999742  1   11110       00111111   12234579999999


Q ss_pred             CCCCeEEEEEEEcC
Q psy7036          78 ETDAGLYKVKAKNK   91 (254)
Q Consensus        78 ~~d~G~Y~C~~~~~   91 (254)
                      .+|+|.|.|.+.+.
T Consensus        80 ~~Dsg~Y~Ca~~~~   93 (106)
T cd04980          80 PEDAAVYYCQQYGT   93 (106)
T ss_pred             hHHCEEEEEEEeCC
Confidence            99999999998653

IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd00098 IgC Immunoglobulin Constant domain

Probab=98.95  E-value=5.3e-09  Score=64.60  Aligned_cols=74  Identities=14%  Similarity=0.166  Sum_probs=54.5

Q ss_pred             cCCCeEEEEEEEeeC-C-CCceEEEeCCEEeeeCCc-ceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcCCCc
Q psy7036          21 DEGNRLIFECQLLCN-P-KPDIVWFRGETQLSEDTR-TVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGE   94 (254)
Q Consensus        21 ~~g~~v~l~C~~~~~-~-~~~v~W~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~   94 (254)
                      ..|+.++|.|.+.|. | ...++|+++|..+..... .......++.....+.|.+......|.+.|+|.|.+....
T Consensus        11 ~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~~~~   87 (95)
T cd00098          11 LLGGSVTLTCLATGFYPPDITVTWLKNGKELTSGVTTTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHESLP   87 (95)
T ss_pred             HcCCCeEEEEEEeeEECCCcEEEEEECCEECCCceeccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCCC
Confidence            478999999999986 5 468999999998865543 2333333444445557777777778999999999986643

IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.

>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=98.93  E-value=5.9e-08  Score=59.08  Aligned_cols=72  Identities=14%  Similarity=0.282  Sum_probs=50.1

Q ss_pred             CeeeecCCCeEEEEEEEeeCCCCeEEEEECCEecc------cCCcceEEEcC-CCCceeeEEEEccCCCCCceeEEEEEE
Q psy7036         120 SIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVK------EDKRHKFSIDK-DGHSYFASLEIIDVTIEDAGKYKVTAK  192 (254)
Q Consensus       120 ~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~------~~~~~~~~~~~-~~~~~~~~l~i~~~~~~d~G~y~C~~~  192 (254)
                      ..+.+.+|+++.|.|.+.+.....+.|++.+..+.      ...+.++.... ++..  .+|.|.+++.+|+|.|.|.+.
T Consensus         5 ~nvtv~~G~ta~L~C~v~~~~~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~~~~--~tL~I~~vq~~D~G~Y~Cqv~   82 (95)
T cd05881           5 EDVTVVEGEVAIISCRVKNNDDSVIQLLNPNRQTIYFRDVRPLKDSRFQLVNFSSNE--LRVSLSNVSLSDEGRYFCQLY   82 (95)
T ss_pred             CceEEcCCCcEEEEEEEccCCccEEEEEecCCcEEEecCccccCCcCEEEEeCCCCE--EEEEECcCCcccCEEEEEEEE
Confidence            34678899999999999887666788887653321      01122333222 2332  379999999999999999997


Q ss_pred             c
Q psy7036         193 N  193 (254)
Q Consensus       193 ~  193 (254)
                      .
T Consensus        83 t   83 (95)
T cd05881          83 T   83 (95)
T ss_pred             c
Confidence            5

Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a

>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like

Probab=98.93  E-value=9.5e-09  Score=63.47  Aligned_cols=80  Identities=14%  Similarity=0.174  Sum_probs=51.8

Q ss_pred             cCCCeEEEEEEEee-CCCCceEEEeCCEEeeeCC-------------cceEEEeecCCcceEEEEEEeccCCCCCeEEEE
Q psy7036          21 DEGNRLIFECQLLC-NPKPDIVWFRGETQLSEDT-------------RTVMKTTPIGTNKYLVALELDDVIETDAGLYKV   86 (254)
Q Consensus        21 ~~g~~v~l~C~~~~-~~~~~v~W~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C   86 (254)
                      .+|++|+|.|.... .....+.|++....+....             ++.-+..-   .....+|.|.+++.+|+|.|.|
T Consensus         2 ~~G~sVtL~c~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~---~~~~~sL~I~~~~~~DsG~Y~c   78 (97)
T cd05775           2 ILGGSVTLPLNIPDGTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNF---SQNDYSLQISNLKMEDAGSYRA   78 (97)
T ss_pred             ccCCeEEEeCCCCCCcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEe---cCCceeEEECCCchHHCEEEEE
Confidence            47999999998854 4456799998754321110             11111111   1123489999999999999999


Q ss_pred             EEEcCCCce-EEEEEEEE
Q psy7036          87 KAKNKMGEV-AASINLNF  103 (254)
Q Consensus        87 ~~~~~~~~~-~~~~~l~v  103 (254)
                      .+.+..+.. ...+.|.|
T Consensus        79 ~v~~~~~~~~~~~f~L~v   96 (97)
T cd05775          79 EINTKNGVTITKEFTLHI   96 (97)
T ss_pred             EEEcCCCCeEEEEEEEEe
Confidence            999776553 44555554

Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region

>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins

Probab=98.92  E-value=3.1e-08  Score=61.56  Aligned_cols=78  Identities=17%  Similarity=0.276  Sum_probs=49.5

Q ss_pred             eEEEEEEEeeCC---CCceEEEeCCE-----Ee---ee--------CCcceEEEeecCCcceEEEEEEeccCCCCCeEEE
Q psy7036          25 RLIFECQLLCNP---KPDIVWFRGET-----QL---SE--------DTRTVMKTTPIGTNKYLVALELDDVIETDAGLYK   85 (254)
Q Consensus        25 ~v~l~C~~~~~~---~~~v~W~~~~~-----~~---~~--------~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~   85 (254)
                      +|+|.|......   ...+.|+|...     .+   ..        ..+.+..+..+ .....++|.|.+++.+|+|.|.
T Consensus         2 ~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~Rv~f~~~-~~~~~~sL~I~nv~~sD~GtY~   80 (100)
T cd05888           2 DTRLPCRYNVSDGETVVQVLWIRENAGGVEEEIALLHFKYGQTEFHAYEGRVRFETP-NPIADGALILRNAVQADEGKYK   80 (100)
T ss_pred             CEEEEeEEecCCCCcEEEEEEEEccCCCCcEEEEEEeccCCcccCCCccCcEEEeCC-CCCCceEEEEecCccccceEEE
Confidence            689999986443   44799998321     11   10        11122333221 1123457999999999999999


Q ss_pred             EEEEc-CCCceEEEEEEEE
Q psy7036          86 VKAKN-KMGEVAASINLNF  103 (254)
Q Consensus        86 C~~~~-~~~~~~~~~~l~v  103 (254)
                      |.+.+ ..|..+..+.|.|
T Consensus        81 C~v~~~p~g~~~~~~~L~V   99 (100)
T cd05888          81 CRVITFPAGNFEAELVLTV   99 (100)
T ss_pred             EEEEeCCCCCeeeEEEEEe
Confidence            99986 5566666666665

Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult

>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0)

Probab=98.91  E-value=5.5e-08  Score=61.81  Aligned_cols=79  Identities=13%  Similarity=0.172  Sum_probs=50.8

Q ss_pred             CeeeecCCCeEEEEEEEeeCC----CCeEEEEE---------------CCEeccc---CCcceEEEcCCCCceeeEEEEc
Q psy7036         120 SIRQEDDGKRLLFECRIQADP----APTVIWSH---------------SGVQVKE---DKRHKFSIDKDGHSYFASLEII  177 (254)
Q Consensus       120 ~~~~~~~g~~~~l~C~~~~~~----~~~~~W~~---------------~~~~~~~---~~~~~~~~~~~~~~~~~~l~i~  177 (254)
                      ..+.+..|+.+.|.|......    ...+.|.+               ++.....   ....+.....+.....+++.|.
T Consensus         6 ~ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daSI~I~   85 (116)
T cd05879           6 REVYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGSIVIH   85 (116)
T ss_pred             ceEEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeEEEEc
Confidence            345677899999999986532    34799943               2222210   0111222222222344689999


Q ss_pred             cCCCCCceeEEEEEEcCCCcc
Q psy7036         178 DVTIEDAGKYKVTAKNELGES  198 (254)
Q Consensus       178 ~~~~~d~G~y~C~~~~~~~~~  198 (254)
                      +++.+|.|.|+|.+.|.-+..
T Consensus        86 nv~~sD~G~Y~C~v~n~p~~~  106 (116)
T cd05879          86 NLDYTDNGTFTCDVKNPPDIV  106 (116)
T ss_pred             cCCcccCEEEEEEEEcCCCcC
Confidence            999999999999999976644

Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.

>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican

Probab=98.91  E-value=4.7e-08  Score=61.53  Aligned_cols=82  Identities=13%  Similarity=0.303  Sum_probs=55.8

Q ss_pred             CCeEEEEEEEeeCC-----------CCceEEEeC-----CE-----Ee----------eeCCcceEEEeecCCcceEEEE
Q psy7036          23 GNRLIFECQLLCNP-----------KPDIVWFRG-----ET-----QL----------SEDTRTVMKTTPIGTNKYLVAL   71 (254)
Q Consensus        23 g~~v~l~C~~~~~~-----------~~~v~W~~~-----~~-----~~----------~~~~~~~~~~~~~~~~~~~~~l   71 (254)
                      |++++|.|...-.|           ...|.|++-     +.     .+          ....+.+..........+.++|
T Consensus         2 ~g~v~LPC~f~~~p~~p~~~~~~~~~~rIkW~~~~~~~~g~~~~e~~Vlv~~~g~~~~~~~y~gRv~l~~~~~~~g~asL   81 (117)
T cd05901           2 SGSVVLPCRFSTLPTLPPSVITTSEFLRIKWTKIEVDKNGKDHKETTVLVAQNGIIKIGQEYMGRVSVPSHPEDQGDASL   81 (117)
T ss_pred             CCCEEEeeEEEecCCCCCcccCCCCCcEEEEEEecccccccCCCccEEEEEECCEEEECCcccCcEEeeccCCcCCceEE
Confidence            67899999996432           247999873     11     11          0112223333333333455799


Q ss_pred             EEeccCCCCCeEEEEEEEcCCCceEEEEEEEEe
Q psy7036          72 ELDDVIETDAGLYKVKAKNKMGEVAASINLNFS  104 (254)
Q Consensus        72 ~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~  104 (254)
                      .|.+++.+|+|.|.|.+.+........+.|.|.
T Consensus        82 ~i~~v~~sD~G~Y~C~V~~g~~~~~~~v~L~V~  114 (117)
T cd05901          82 TIVKLRASDAGVYRCEVMHGIEDTQDTVSLDVS  114 (117)
T ss_pred             EEcccccccCEEEEEEEEECCcccEEEEEEEEE
Confidence            999999999999999999887777778888775

Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA

>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively)

Probab=98.91  E-value=2.4e-08  Score=59.62  Aligned_cols=68  Identities=16%  Similarity=0.209  Sum_probs=44.7

Q ss_pred             EEEEEEEee-CCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcCCCc
Q psy7036          26 LIFECQLLC-NPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGE   94 (254)
Q Consensus        26 v~l~C~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~   94 (254)
                      +.|.|.+.+ .|.+.++|+++++.+.... ........+.....+.|.+......+.+.|+|.+.+....
T Consensus         2 ~~L~C~~~~~~P~~~v~W~~~~~~l~~~~-~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~~l~   70 (82)
T cd05761           2 VELTCTSSGSKPAATIRWFKGDKELKGVK-LKEEDENGKTFTVTSSLRFQVDREDDGAPIICRVDHPALK   70 (82)
T ss_pred             EEEEEEecCcCcCCeEEEEECCEEccCce-eeEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeChhcC
Confidence            689999976 5888999999999886432 1111111122233445666655566677999999987654

Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel

>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain

Probab=98.90  E-value=1.1e-08  Score=65.65  Aligned_cols=78  Identities=17%  Similarity=0.253  Sum_probs=52.0

Q ss_pred             EeCCCceeecCCCeEEEEEEEee--CCCCceEEEeCC--EE----e--ee---------CCcceEEEeecCCcceEEEEE
Q psy7036          12 TQKPQLRQEDEGNRLIFECQLLC--NPKPDIVWFRGE--TQ----L--SE---------DTRTVMKTTPIGTNKYLVALE   72 (254)
Q Consensus        12 ~~~~~~~~v~~g~~v~l~C~~~~--~~~~~v~W~~~~--~~----~--~~---------~~~~~~~~~~~~~~~~~~~l~   72 (254)
                      .+.|..+.+.+|++|+|.|.+.+  .+...+.|||..  ..    +  ..         ....++...... ......|.
T Consensus         2 ~Q~p~~~~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~-~~~~~~L~   80 (116)
T cd04982           2 EQPQLSITREESKSVTISCKVSGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDV-GKSTSTLT   80 (116)
T ss_pred             CCcCCeEEeCCCCCEEEEEEEeCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEEC-CCCEEEEE
Confidence            34567778999999999999976  567789999842  11    1  00         001112111111 11345899


Q ss_pred             EeccCCCCCeEEEEEEEc
Q psy7036          73 LDDVIETDAGLYKVKAKN   90 (254)
Q Consensus        73 i~~~~~~d~G~Y~C~~~~   90 (254)
                      |.+++.+|+|.|.|.+..
T Consensus        81 I~~~~~~Dsg~Y~C~~~~   98 (116)
T cd04982          81 IQNLEKEDSATYYCAYWE   98 (116)
T ss_pred             EEECCHHHCEEEEEEEec
Confidence            999999999999999864

IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=98.90  E-value=2.2e-08  Score=64.07  Aligned_cols=80  Identities=15%  Similarity=0.299  Sum_probs=53.8

Q ss_pred             eEeCCCceeecCCCeEEEEEEEe-eCCCCceEEEeCCE-----Eee--eC----------CcceEEEeecCCcceEEEEE
Q psy7036          11 FTQKPQLRQEDEGNRLIFECQLL-CNPKPDIVWFRGET-----QLS--ED----------TRTVMKTTPIGTNKYLVALE   72 (254)
Q Consensus        11 ~~~~~~~~~v~~g~~v~l~C~~~-~~~~~~v~W~~~~~-----~~~--~~----------~~~~~~~~~~~~~~~~~~l~   72 (254)
                      ++..|..+.+.+|+++.|.|... ......+.|++...     .+.  ..          ...+.....+ ......+|.
T Consensus         4 vt~~~~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~sL~   82 (114)
T PF07686_consen    4 VTQPPSPVTVQEGESVTLPCSYSSSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGN-GSQNNFSLT   82 (114)
T ss_dssp             EEEEESEEEEETTSEEEEEEEEESSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEE-TTTTEEEEE
T ss_pred             EEEeCCeEEEecCCCEEEEEEEeCCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeec-ccCCeEEEE
Confidence            44557788899999999999998 44566899998321     111  00          0011111111 113355899


Q ss_pred             EeccCCCCCeEEEEEEEcC
Q psy7036          73 LDDVIETDAGLYKVKAKNK   91 (254)
Q Consensus        73 i~~~~~~d~G~Y~C~~~~~   91 (254)
                      |.+++.+|+|.|.|.+...
T Consensus        83 i~~l~~~DsG~Y~C~v~~~  101 (114)
T PF07686_consen   83 IKNLQPSDSGTYFCQVSTS  101 (114)
T ss_dssp             ESSESGGGEEEEEEEEEES
T ss_pred             ECCCCcCcCEEEEEEEEEC
Confidence            9999999999999999876

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....

>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins

Probab=98.89  E-value=2.8e-08  Score=63.66  Aligned_cols=79  Identities=15%  Similarity=0.237  Sum_probs=50.4

Q ss_pred             CCCceeecCCCeEEEEEEEeeCC----CCceEEEeCCE------Ee-ee---------CCcc--eEEEeecCCcceEEEE
Q psy7036          14 KPQLRQEDEGNRLIFECQLLCNP----KPDIVWFRGET------QL-SE---------DTRT--VMKTTPIGTNKYLVAL   71 (254)
Q Consensus        14 ~~~~~~v~~g~~v~l~C~~~~~~----~~~v~W~~~~~------~~-~~---------~~~~--~~~~~~~~~~~~~~~l   71 (254)
                      .|..+.+.+|++|+|.|......    ...+.|++...      .+ ..         ..++  ++... .......++|
T Consensus         4 ~p~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~-~~~~~~~~sL   82 (116)
T cd05715           4 TPREVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWV-GNPSRKDASI   82 (116)
T ss_pred             cCCeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEe-cCCcCCeeEE
Confidence            46677889999999999986432    24699986321      11 00         0111  11111 1112234689


Q ss_pred             EEeccCCCCCeEEEEEEEcCCC
Q psy7036          72 ELDDVIETDAGLYKVKAKNKMG   93 (254)
Q Consensus        72 ~i~~~~~~d~G~Y~C~~~~~~~   93 (254)
                      .|.+++.+|+|.|.|.+.+...
T Consensus        83 ~I~~v~~~D~G~Y~C~v~~~~~  104 (116)
T cd05715          83 VIHNLQFTDNGTYTCDVKNPPD  104 (116)
T ss_pred             EEeeCCcccCEEEEEEEEeCCC
Confidence            9999999999999999987654

Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2

>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI

Probab=98.89  E-value=2.8e-08  Score=60.94  Aligned_cols=76  Identities=12%  Similarity=0.222  Sum_probs=52.6

Q ss_pred             CCeeEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEE
Q psy7036           8 APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVK   87 (254)
Q Consensus         8 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~   87 (254)
                      .|.+...|. ..|.+|++|+|.|.... ....+.|||+|.......   .  .........+.+.|.+++..|+|.|.|.
T Consensus         1 kP~l~a~p~-~vV~~G~~VTL~C~~~~-~~~~f~l~k~g~~~~~~~---~--~~~~~~~~~a~f~I~~~~~~~~G~Y~C~   73 (94)
T cd05711           1 KPFLSAHPS-PVVPSGENVTLQCHSDI-RFDRFILYKEGRSKPVLH---L--YEKHHGGFQASFPLGPVTPAHAGTYRCY   73 (94)
T ss_pred             CCEEEecCC-CccCCCCeEEEEEecCC-CCCEEEEEECCCCCCcee---c--ccccCCeEEEEEEecCCCcccCEEEEEE
Confidence            366776664 46889999999998753 455799999887532110   0  0001123344799999999999999998


Q ss_pred             EEc
Q psy7036          88 AKN   90 (254)
Q Consensus        88 ~~~   90 (254)
                      ...
T Consensus        74 ~~~   76 (94)
T cd05711          74 GSY   76 (94)
T ss_pred             EEC
Confidence            753

IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.

>cd00099 IgV Immunoglobulin variable domain (IgV)

Probab=98.88  E-value=9.6e-09  Score=64.73  Aligned_cols=74  Identities=18%  Similarity=0.291  Sum_probs=49.7

Q ss_pred             eecCCCeEEEEEEEeeC-CCCceEEEeCCE-----Eee----------eCCcceEEEeecCCcceEEEEEEeccCCCCCe
Q psy7036          19 QEDEGNRLIFECQLLCN-PKPDIVWFRGET-----QLS----------EDTRTVMKTTPIGTNKYLVALELDDVIETDAG   82 (254)
Q Consensus        19 ~v~~g~~v~l~C~~~~~-~~~~v~W~~~~~-----~~~----------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G   82 (254)
                      .+.+|++++|.|.+.+. +...+.|++...     .+.          .....+....... .....+|.|.+++.+|+|
T Consensus         2 ~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~-~~~~~sL~I~~v~~~D~G   80 (105)
T cd00099           2 SVSEGESVTLSCTYSGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDS-SKSSFTLTISSLQPEDSA   80 (105)
T ss_pred             eecCCCCEEEEEEEeCCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEec-cCCEEEEEECCCCHHHCE
Confidence            57899999999999865 667899998432     110          0011122211111 124558999999999999


Q ss_pred             EEEEEEEcCCC
Q psy7036          83 LYKVKAKNKMG   93 (254)
Q Consensus        83 ~Y~C~~~~~~~   93 (254)
                      .|.|.+.+..+
T Consensus        81 ~Y~C~v~~~~~   91 (105)
T cd00099          81 VYYCAVSLSGG   91 (105)
T ss_pred             EEEEEEecCCC
Confidence            99999987654

IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=98.88  E-value=3.9e-08  Score=58.68  Aligned_cols=68  Identities=16%  Similarity=0.232  Sum_probs=46.5

Q ss_pred             EEEEEEEee-CCCCceEEEeCCEEeeeCCcceEEEeecC-CcceEEEEEEeccCCCCCeEEEEEEEcCCCc
Q psy7036          26 LIFECQLLC-NPKPDIVWFRGETQLSEDTRTVMKTTPIG-TNKYLVALELDDVIETDAGLYKVKAKNKMGE   94 (254)
Q Consensus        26 v~l~C~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~   94 (254)
                      ++|+|.+.+ .|.+.|+|+++|+.+..... ......++ .....+.|.+......+...|+|++.+....
T Consensus         2 ~~LtC~a~g~~P~~~ItW~k~g~~l~~~~~-~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~l~   71 (83)
T cd07705           2 AKLRCTSSGSKPAANIKWRKGDQELEGAPT-SVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHESLH   71 (83)
T ss_pred             EEEEEEecCccCCCEeEEEECCEECCCcce-eEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECcccC
Confidence            689999977 58889999999998765432 22222221 2223456777666677778999999987643

Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel

>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=98.87  E-value=2.9e-08  Score=61.82  Aligned_cols=79  Identities=22%  Similarity=0.253  Sum_probs=51.3

Q ss_pred             eeecCCCeEEEEEEEeeCCCCeEEEEECCEe-----cc---cC---------CcceEEEcCCCCceeeEEEEccCCCCCc
Q psy7036         122 RQEDDGKRLLFECRIQADPAPTVIWSHSGVQ-----VK---ED---------KRHKFSIDKDGHSYFASLEIIDVTIEDA  184 (254)
Q Consensus       122 ~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~-----~~---~~---------~~~~~~~~~~~~~~~~~l~i~~~~~~d~  184 (254)
                      ..+.+|+++.|.|.........+.|+|+...     +.   ..         ...+.....++     +|.|.+++.+|+
T Consensus         8 ~~~~~G~~V~L~v~~~p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~ng-----SL~I~~v~~~D~   82 (105)
T cd05774           8 PQVAEGENVLLLVHNLPENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYPNG-----SLLIQNVTQKDT   82 (105)
T ss_pred             CcccCCCCEEEEecCCCCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeCCC-----cEEEecCCcccC
Confidence            3566899999999754333448999996321     10   00         11122233333     799999999999


Q ss_pred             eeEEEEEEcCCC-cceEEEEEE
Q psy7036         185 GKYKVTAKNELG-ESNATISLN  205 (254)
Q Consensus       185 G~y~C~~~~~~~-~~~~~~~~~  205 (254)
                      |.|+|.+.+... ....++.+.
T Consensus        83 G~Y~~~v~~~~~~~~~~~v~l~  104 (105)
T cd05774          83 GFYTLQTITTNFQVEQATVHLQ  104 (105)
T ss_pred             EEEEEEEEeCCccEEEEEEEEE
Confidence            999999998764 344555443

IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D

>PHA02987 Ig domain OX-2-like protein; Provisional

Probab=98.87  E-value=5.9e-08  Score=65.20  Aligned_cols=87  Identities=11%  Similarity=0.155  Sum_probs=59.1

Q ss_pred             ceeecCCCeEEEEEEEe-eCCCCceEEEeCCEEee----------eCCcceEEEeecCCcceEEEEEEeccCCCCCeEEE
Q psy7036          17 LRQEDEGNRLIFECQLL-CNPKPDIVWFRGETQLS----------EDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYK   85 (254)
Q Consensus        17 ~~~v~~g~~v~l~C~~~-~~~~~~v~W~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~   85 (254)
                      .+.|.+|++|+|.|... +...+.++|+|..+.+.          .+...++..  .......+.|+|.+++.+|+|.|.
T Consensus        24 ~v~V~ege~VtLsCs~t~s~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~--mS~s~~~StItIknVt~sDeGcY~  101 (189)
T PHA02987         24 KITVSEHVNVKISCNKTSSFNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEY--LSKSFNESTILIKNVSLKDNGCYT  101 (189)
T ss_pred             EEEEcCCCCEEEEEecCCCCccceEEEEEcCCCEEEEecCCcEEChhhcCeEEE--eccCCCcceEEEEeCChhhCeEEE
Confidence            45789999999999984 55677899999643221          111112211  111122348999999999999999


Q ss_pred             EEEEc-CCC-ceEEEEEEEEec
Q psy7036          86 VKAKN-KMG-EVAASINLNFSR  105 (254)
Q Consensus        86 C~~~~-~~~-~~~~~~~l~v~~  105 (254)
                      |.+.. ..| ..+....|.|..
T Consensus       102 C~F~tfp~G~~~~gt~CLtVt~  123 (189)
T PHA02987        102 CIFNTLLSKNNEKGVVCLNVTT  123 (189)
T ss_pred             EEEEecCCCCCceeEEEEEEEc
Confidence            98874 445 677788888864

>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B

Probab=98.87  E-value=2.7e-08  Score=59.08  Aligned_cols=63  Identities=19%  Similarity=0.538  Sum_probs=50.1

Q ss_pred             eeeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEE
Q psy7036         121 IRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAK  192 (254)
Q Consensus       121 ~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~  192 (254)
                      ...+..|.++.|.|...+. .+.+.|++++..+..+  .++.....+      |.|..++.+|+|.|.|.+.
T Consensus         5 ~~tv~~g~~v~L~C~~~s~-~A~v~W~~ng~~l~~~--~r~~~~~~G------LlI~~~~~~dsG~Y~C~s~   67 (85)
T cd05872           5 NRTVAPGADVVLPCQLRSN-LASPVWLFNGTPLNAQ--FSYRVGTDG------LLILVTSPEHSGTYRCYSE   67 (85)
T ss_pred             EEEEecCCCEEEECCCCCC-CccEEEEECCcccCCC--cceEEeCCC------CEEEECCHhhCEEEEEEEe
Confidence            3567789999999998665 6699999999987643  344444443      7799999999999999987

Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.

>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins

Probab=98.87  E-value=5.7e-08  Score=61.25  Aligned_cols=81  Identities=23%  Similarity=0.464  Sum_probs=53.8

Q ss_pred             CCCeEEEEEEEeeCC------CCeEEEEECC-----E-eccc--CCc--------ceEEEcCCCCceeeEEEEccCCCCC
Q psy7036         126 DGKRLLFECRIQADP------APTVIWSHSG-----V-QVKE--DKR--------HKFSIDKDGHSYFASLEIIDVTIED  183 (254)
Q Consensus       126 ~g~~~~l~C~~~~~~------~~~~~W~~~~-----~-~~~~--~~~--------~~~~~~~~~~~~~~~l~i~~~~~~d  183 (254)
                      .|++++|.|.....+      ...+.|++..     . .+..  ...        .++... ......++|.|.+++.+|
T Consensus         1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~-~~~~~~~sL~I~~v~~sD   79 (106)
T cd05714           1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLY-PADPGDASLVITDLRLED   79 (106)
T ss_pred             CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEee-CCCCCcceEEECCCCHHH
Confidence            378999999987543      4579999862     1 1110  000        011110 111234689999999999


Q ss_pred             ceeEEEEEEcCCCcceEEEEEEEe
Q psy7036         184 AGKYKVTAKNELGESNATISLNFD  207 (254)
Q Consensus       184 ~G~y~C~~~~~~~~~~~~~~~~v~  207 (254)
                      +|.|.|.+.+..+.....+.|.|.
T Consensus        80 ~G~Y~C~v~~~~~~~~~~v~L~V~  103 (106)
T cd05714          80 SGRYRCEVIDGIEDEQDTVELEVR  103 (106)
T ss_pred             CEEEEEEEEcCCCceEEEEEEEEE
Confidence            999999999877767778877775

Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.

>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins

Probab=98.86  E-value=3.6e-08  Score=60.97  Aligned_cols=79  Identities=14%  Similarity=0.212  Sum_probs=50.5

Q ss_pred             CCeEEEEEEEeeCCC-CceEEEeCCE----Eee-e----------CCcceEEEeecCCcceEEEEEEeccCCCCCeEEEE
Q psy7036          23 GNRLIFECQLLCNPK-PDIVWFRGET----QLS-E----------DTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKV   86 (254)
Q Consensus        23 g~~v~l~C~~~~~~~-~~v~W~~~~~----~~~-~----------~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C   86 (254)
                      |++|+|.|....... ..+.|+|...    .+. .          ....+...  .......++|.|.+++.+|+|.|.|
T Consensus         1 G~~vtL~C~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~--~~~~~~~~sL~I~nv~~~D~G~Y~C   78 (97)
T cd05846           1 GGNVTLSCNLTLPEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSI--TSLGLNSTSITIWNVTLEDEGCYKC   78 (97)
T ss_pred             CCcEEEEEEeCCCCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEE--cCCCCCccEEEEeCCceeeeEEEEE
Confidence            789999999754332 3699998532    110 0          00111111  1122334589999999999999999


Q ss_pred             EEE-cCCCceEEEEEEEE
Q psy7036          87 KAK-NKMGEVAASINLNF  103 (254)
Q Consensus        87 ~~~-~~~~~~~~~~~l~v  103 (254)
                      .+. ...|.....+.|+|
T Consensus        79 ~~~~~p~g~~~~~~~L~v   96 (97)
T cd05846          79 IFNTFPDGSKSGTMCLTV   96 (97)
T ss_pred             EEEeCCCCCeeeEEEEEE
Confidence            987 45566777777776

Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.

>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins

Probab=98.85  E-value=8.7e-08  Score=59.02  Aligned_cols=77  Identities=14%  Similarity=0.293  Sum_probs=49.7

Q ss_pred             eEEEEEEEee-CC---CCceEEEeCC--E--Ee--ee---------CCcceEEEeecCCcceEEEEEEeccCCCCCeEEE
Q psy7036          25 RLIFECQLLC-NP---KPDIVWFRGE--T--QL--SE---------DTRTVMKTTPIGTNKYLVALELDDVIETDAGLYK   85 (254)
Q Consensus        25 ~v~l~C~~~~-~~---~~~v~W~~~~--~--~~--~~---------~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~   85 (254)
                      +|+|.|.... .+   ..+|+|.+..  .  .+  ..         ..+.++...  ......++|.|.+++.+|+|.|+
T Consensus         2 ~v~L~C~f~~~~~~~~~~~V~W~k~~~~~~~~va~y~~~~g~~~~~~f~~Rv~f~--~~~~~daSi~i~nl~~~D~G~Y~   79 (99)
T cd05886           2 DVVLHCSFINPLPPVKITQVTWQKLTNGSKQNVAIYNPSMGVSVLPPYRERVTFK--NPSFEDGTISLSRLELEDEGVYI   79 (99)
T ss_pred             cEEEEeEeecCCCCCCeEEEEEEECCCCCceEEEEECCcCCcccCccccCcEEEc--CCCCCcceEEEcCCccccCEEEE
Confidence            6899999963 22   1269998742  1  11  00         111222222  11123458999999999999999


Q ss_pred             EEEEc-CCCceEEEEEEEE
Q psy7036          86 VKAKN-KMGEVAASINLNF  103 (254)
Q Consensus        86 C~~~~-~~~~~~~~~~l~v  103 (254)
                      |.+.+ ..|..+..+.|.|
T Consensus        80 C~v~t~P~g~~~~~~~L~V   98 (99)
T cd05886          80 CEFATFPTGNRESQLNLTV   98 (99)
T ss_pred             EEEEeCCCCCeEEEEEEEE
Confidence            99998 6677777777776

Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is

>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=98.84  E-value=2.7e-08  Score=59.24  Aligned_cols=69  Identities=13%  Similarity=0.208  Sum_probs=46.4

Q ss_pred             EEEEEEEee-CCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcCCCc
Q psy7036          26 LIFECQLLC-NPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGE   94 (254)
Q Consensus        26 v~l~C~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~   94 (254)
                      ++|.|.+.| .|...++|+|+|..+............++.....+.|.+......+...|+|.+.+....
T Consensus         2 ~~LtC~a~gf~P~~~itW~kng~~l~~~~~~~~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~~l~   71 (83)
T cd05884           2 MQLTCKTSGSKPAADIRWFKNDKEIKDVKYLKEEDANRKTFTVSSTLDFRVDRSDDGVAIICRVDHESLN   71 (83)
T ss_pred             EEEEEEeCCccCCCEEEEEECCEECcCceeeEeeCCCCCEEEEEEEEEEEcccccCCCEEEEEEechhcC
Confidence            689999977 677899999999987543322222222222334557777755566777999999876543

Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.

>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan

Probab=98.84  E-value=1.1e-07  Score=59.98  Aligned_cols=82  Identities=21%  Similarity=0.383  Sum_probs=53.5

Q ss_pred             CCCeEEEEEEEeeCC------------CCeEEEEECCE----e-c---------ccCCcceEEEcCC-CCceeeEEEEcc
Q psy7036         126 DGKRLLFECRIQADP------------APTVIWSHSGV----Q-V---------KEDKRHKFSIDKD-GHSYFASLEIID  178 (254)
Q Consensus       126 ~g~~~~l~C~~~~~~------------~~~~~W~~~~~----~-~---------~~~~~~~~~~~~~-~~~~~~~l~i~~  178 (254)
                      .|++++|.|......            .+.+.|+|...    . +         ......++..... .....++|.|.+
T Consensus         1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~n   80 (112)
T cd05900           1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEITE   80 (112)
T ss_pred             CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEee
Confidence            378999999976432            35799998421    1 1         0111113332210 011235899999


Q ss_pred             CCCCCceeEEEEEEcCCCcceEEEEEEEe
Q psy7036         179 VTIEDAGKYKVTAKNELGESNATISLNFD  207 (254)
Q Consensus       179 ~~~~d~G~y~C~~~~~~~~~~~~~~~~v~  207 (254)
                      ++.+|+|.|+|.+.+........+.|.|+
T Consensus        81 l~~sDsG~Y~C~V~~g~~~~~~~v~l~v~  109 (112)
T cd05900          81 LRSNDSGTYRCEVMHGIEDNYDTVEVQVK  109 (112)
T ss_pred             cccccCEEEEEEEecCCCCceeEEEEEEE
Confidence            99999999999999877777777777765

Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=98.83  E-value=7.7e-08  Score=58.91  Aligned_cols=81  Identities=12%  Similarity=0.214  Sum_probs=52.5

Q ss_pred             eEeCCCceeecCCCeEEEEEEEee-CCCCc--eEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEE
Q psy7036          11 FTQKPQLRQEDEGNRLIFECQLLC-NPKPD--IVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVK   87 (254)
Q Consensus        11 ~~~~~~~~~v~~g~~v~l~C~~~~-~~~~~--v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~   87 (254)
                      +...+....+.+|+.++|+|.+.| .|.+.  +.|||++..+.......   ..........++.+...+.+|...|+|+
T Consensus         4 V~l~~~p~~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~~~~~~---~~~~~~~~~stlt~~~~r~D~g~~~sC~   80 (100)
T cd05755           4 VELSPLPSWQPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSRQPFGD---NTKSPVNAPATITITVDREDHGANFSCE   80 (100)
T ss_pred             EEEecCCCcccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEcccceecc---ccCCCceeEEEEEEecchhhCCcEEEEE
Confidence            344444556789999999999976 56665  79999999885432110   1111222344677765544445599999


Q ss_pred             EEcCCCc
Q psy7036          88 AKNKMGE   94 (254)
Q Consensus        88 ~~~~~~~   94 (254)
                      +.+..+.
T Consensus        81 A~l~l~~   87 (100)
T cd05755          81 TELDLRP   87 (100)
T ss_pred             EEeccCc
Confidence            9876544

Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.

>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively)

Probab=98.83  E-value=5.8e-08  Score=57.95  Aligned_cols=67  Identities=19%  Similarity=0.249  Sum_probs=45.4

Q ss_pred             EEEEEEEeeC-CCCeEEEEECCEecccCCcceEEEcCCCC--ceeeEEEEccCCCCCceeEEEEEEcCCCcc
Q psy7036         130 LLFECRIQAD-PAPTVIWSHSGVQVKEDKRHKFSIDKDGH--SYFASLEIIDVTIEDAGKYKVTAKNELGES  198 (254)
Q Consensus       130 ~~l~C~~~~~-~~~~~~W~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~  198 (254)
                      +.|.|.+.+. |.+.+.|++++..+....  ......++.  ...+.|.+.....++.+.|+|.|.|.....
T Consensus         2 ~~L~C~~~~~~P~~~v~W~~~~~~l~~~~--~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~~l~~   71 (82)
T cd05761           2 VELTCTSSGSKPAATIRWFKGDKELKGVK--LKEEDENGKTFTVTSSLRFQVDREDDGAPIICRVDHPALKS   71 (82)
T ss_pred             EEEEEEecCcCcCCeEEEEECCEEccCce--eeEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeChhcCC
Confidence            6899998764 788999999999886433  122222222  234566666555666679999999986543

Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel

>cd00098 IgC Immunoglobulin Constant domain

Probab=98.82  E-value=3.7e-08  Score=60.81  Aligned_cols=73  Identities=18%  Similarity=0.220  Sum_probs=52.2

Q ss_pred             cCCCeEEEEEEEeeC-CC-CeEEEEECCEecccCCc-ceEEEcCCC-CceeeEEEEccCCCCCceeEEEEEEcCCCc
Q psy7036         125 DDGKRLLFECRIQAD-PA-PTVIWSHSGVQVKEDKR-HKFSIDKDG-HSYFASLEIIDVTIEDAGKYKVTAKNELGE  197 (254)
Q Consensus       125 ~~g~~~~l~C~~~~~-~~-~~~~W~~~~~~~~~~~~-~~~~~~~~~-~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~  197 (254)
                      ..|..+.|.|.+.++ |. ..+.|+++|..+..... .......++ +...+.|.+......+.+.|+|.|.+....
T Consensus        11 ~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~~~~   87 (95)
T cd00098          11 LLGGSVTLTCLATGFYPPDITVTWLKNGKELTSGVTTTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHESLP   87 (95)
T ss_pred             HcCCCeEEEEEEeeEECCCcEEEEEECCEECCCceeccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCCC
Confidence            358899999999997 53 57999999998865543 222222232 244567777777777999999999987654

IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.

>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins

Probab=98.82  E-value=7.7e-08  Score=61.03  Aligned_cols=77  Identities=16%  Similarity=0.253  Sum_probs=51.9

Q ss_pred             CCeeeecCCCeEEEEEEEeeCCCCeEEEEECCEe------ccc------CCcceEEEcCCCCceeeEEEEccCCCCCcee
Q psy7036         119 PSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQ------VKE------DKRHKFSIDKDGHSYFASLEIIDVTIEDAGK  186 (254)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~------~~~------~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~  186 (254)
                      +..+.+.+|++++|.|.+.+.+...+.|++....      +..      ....++....+.......|.|.+++.+|+|.
T Consensus         5 ~~~v~~~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~DsG~   84 (109)
T cd04983           5 PQSLSVQEGENVTLNCNYSTSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAAQLSDSAV   84 (109)
T ss_pred             CCceEEcCCCCEEEEEEECCCCccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCCCHHHCEE
Confidence            3456788999999999988777778999985321      000      0112222221111123589999999999999


Q ss_pred             EEEEEEcCC
Q psy7036         187 YKVTAKNEL  195 (254)
Q Consensus       187 y~C~~~~~~  195 (254)
                      |.|.+.+..
T Consensus        85 Y~C~~~~~~   93 (109)
T cd04983          85 YFCALSESG   93 (109)
T ss_pred             EEEEEecCC
Confidence            999998754

IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP)

Probab=98.81  E-value=1.6e-07  Score=59.23  Aligned_cols=81  Identities=22%  Similarity=0.452  Sum_probs=53.9

Q ss_pred             CCCeEEEEEEEeeCC------CCeEEEEECCEe-------c-cc--------CCcceEEEcCCCCceeeEEEEccCCCCC
Q psy7036         126 DGKRLLFECRIQADP------APTVIWSHSGVQ-------V-KE--------DKRHKFSIDKDGHSYFASLEIIDVTIED  183 (254)
Q Consensus       126 ~g~~~~l~C~~~~~~------~~~~~W~~~~~~-------~-~~--------~~~~~~~~~~~~~~~~~~l~i~~~~~~d  183 (254)
                      .|++++|.|.....|      ...+.|+|....       + ..        ....++..... ....++|.|.+++.+|
T Consensus         1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~-~~~~~sL~I~~v~~~D   79 (106)
T cd05877           1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRA-HDLDASLVITDLRLED   79 (106)
T ss_pred             CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCC-CCCcEEEEEccCChHH
Confidence            378999999976553      346999985311       0 00        00112222111 1123589999999999


Q ss_pred             ceeEEEEEEcCCCcceEEEEEEEe
Q psy7036         184 AGKYKVTAKNELGESNATISLNFD  207 (254)
Q Consensus       184 ~G~y~C~~~~~~~~~~~~~~~~v~  207 (254)
                      +|.|.|.+.+..+.....+.|.|.
T Consensus        80 sG~Y~C~v~~~~~~~~~~~~l~v~  103 (106)
T cd05877          80 YGRYRCEVIDGLEDESVVVALRLR  103 (106)
T ss_pred             CEEEEEEEEecccceEEEEEEEEE
Confidence            999999999988888888877775

Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=98.79  E-value=1.5e-07  Score=56.19  Aligned_cols=68  Identities=15%  Similarity=0.300  Sum_probs=47.8

Q ss_pred             EEEEEEEeeC-CCCeEEEEECCEecccCCcceEEEcCCCCce--eeEEEEccCCCCCceeEEEEEEcCCCcc
Q psy7036         130 LLFECRIQAD-PAPTVIWSHSGVQVKEDKRHKFSIDKDGHSY--FASLEIIDVTIEDAGKYKVTAKNELGES  198 (254)
Q Consensus       130 ~~l~C~~~~~-~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~i~~~~~~d~G~y~C~~~~~~~~~  198 (254)
                      +.|.|.+.+. |.+.|+|+++|..+..... ......++..+  .+.|.+.....++...|+|.+.++....
T Consensus         2 ~~LtC~a~g~~P~~~ItW~k~g~~l~~~~~-~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~l~~   72 (83)
T cd07705           2 AKLRCTSSGSKPAANIKWRKGDQELEGAPT-SVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHESLHD   72 (83)
T ss_pred             EEEEEEecCccCCCEeEEEECCEECCCcce-eEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECcccCC
Confidence            6899998875 7889999999998865432 23333333233  4667776666777789999999987543

Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel

>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain

Probab=98.78  E-value=5.4e-08  Score=62.42  Aligned_cols=79  Identities=14%  Similarity=0.206  Sum_probs=52.2

Q ss_pred             eEeCCCceeecCCCeEEEEEEEeeC-CCCceEEEeCC--EE---eee-------CCcceEEEeecCCcceEEEEEEeccC
Q psy7036          11 FTQKPQLRQEDEGNRLIFECQLLCN-PKPDIVWFRGE--TQ---LSE-------DTRTVMKTTPIGTNKYLVALELDDVI   77 (254)
Q Consensus        11 ~~~~~~~~~v~~g~~v~l~C~~~~~-~~~~v~W~~~~--~~---~~~-------~~~~~~~~~~~~~~~~~~~l~i~~~~   77 (254)
                      +.+.|..+.+.+|++|+|.|..... ....+.|||..  ..   +..       ....++..... ......+|.|.+++
T Consensus         2 v~q~~~~v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~-~~~~~~sL~I~~~~   80 (116)
T cd07706           2 VTQAQPDVSVQVGEEVTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQ-KAQKSISLTISALQ   80 (116)
T ss_pred             cEEeCCceEEcCCCCEEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEe-ccCCEEEEEECCCC
Confidence            4567778889999999999998653 45679999832  11   110       11112221111 11224589999999


Q ss_pred             CCCCeEEEEEEEc
Q psy7036          78 ETDAGLYKVKAKN   90 (254)
Q Consensus        78 ~~d~G~Y~C~~~~   90 (254)
                      .+|+|.|.|.+..
T Consensus        81 ~~Dsg~Y~C~~~~   93 (116)
T cd07706          81 LEDSAKYFCALST   93 (116)
T ss_pred             HHHCEEEEEEEEC
Confidence            9999999999874

IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=98.78  E-value=1.6e-07  Score=58.35  Aligned_cols=78  Identities=17%  Similarity=0.279  Sum_probs=49.8

Q ss_pred             CeEEEEEEEeeCC---CCeEEEEECCEe----c-----------ccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEE
Q psy7036         128 KRLLFECRIQADP---APTVIWSHSGVQ----V-----------KEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKV  189 (254)
Q Consensus       128 ~~~~l~C~~~~~~---~~~~~W~~~~~~----~-----------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C  189 (254)
                      ++++|.|......   ...+.|+|....    +           ......+.....+. ...++|.|.+++.+|+|.|.|
T Consensus         1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~-~~~~sL~I~~v~~~D~G~Y~C   79 (98)
T cd05718           1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSS-LEDATISISNLRLEDEGNYIC   79 (98)
T ss_pred             CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCC-CCceEEEEccCCcccCEEEEE
Confidence            4689999987654   336999986431    0           00011122211111 123589999999999999999


Q ss_pred             EEEc-CCCcceEEEEEEE
Q psy7036         190 TAKN-ELGESNATISLNF  206 (254)
Q Consensus       190 ~~~~-~~~~~~~~~~~~v  206 (254)
                      .+.. +.|.....+.|.|
T Consensus        80 ~v~~~~~g~~~~~~~l~V   97 (98)
T cd05718          80 EFATFPQGNRQKVTTLTV   97 (98)
T ss_pred             EEEeCCCCcEEEEEEEEe
Confidence            9875 5677777777765

Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c

>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins

Probab=98.76  E-value=1.6e-07  Score=57.38  Aligned_cols=78  Identities=18%  Similarity=0.287  Sum_probs=51.3

Q ss_pred             CeEEEEEEEeeC-CCCceEEEeCC----EEee-----------eCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEE
Q psy7036          24 NRLIFECQLLCN-PKPDIVWFRGE----TQLS-----------EDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVK   87 (254)
Q Consensus        24 ~~v~l~C~~~~~-~~~~v~W~~~~----~~~~-----------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~   87 (254)
                      ++++|.|..... ...+|+|.|-.    ..+.           .....++....  .....++|.|.+++.+|+|.|+|.
T Consensus         1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~~--~~~~d~sl~i~nv~~~D~G~Y~C~   78 (96)
T cd05887           1 KNVTLKCRIQVNETITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFKN--YSLLDATIMLENVGFSDIGVYICK   78 (96)
T ss_pred             CCEEEEEEecCCCcEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEcC--CCCCccEEEEeCCCccccEEEEEE
Confidence            468999998642 34579998742    1121           01112232221  222345899999999999999999


Q ss_pred             EE-cCCCceEEEEEEEE
Q psy7036          88 AK-NKMGEVAASINLNF  103 (254)
Q Consensus        88 ~~-~~~~~~~~~~~l~v  103 (254)
                      +. ...|...++..|.|
T Consensus        79 v~tfP~G~~~~~~~l~~   95 (96)
T cd05887          79 AVTFPLGNTQSSTTVTV   95 (96)
T ss_pred             EEeCCCCCeeEEEEEEE
Confidence            86 46678888888876

Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also

>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C

Probab=98.76  E-value=1.3e-08  Score=59.82  Aligned_cols=57  Identities=26%  Similarity=0.447  Sum_probs=39.4

Q ss_pred             EEEEEEEeeCC-CCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEc
Q psy7036         130 LLFECRIQADP-APTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKN  193 (254)
Q Consensus       130 ~~l~C~~~~~~-~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~  193 (254)
                      +.|.|.+.+.+ .+.+.|+ +....      ............+.|.|.++..+|.|.|+|.|.|
T Consensus        18 ~~l~C~~~~~~~~~~~~W~-~~~~~------~~~~~~~~~~~~~~L~i~~v~~~~~g~y~C~a~N   75 (75)
T PF13927_consen   18 VTLTCSAEGGPPPPSISWY-DSNPS------FNSNSRGSSSSNSTLTISNVTRSDNGTYTCIASN   75 (75)
T ss_dssp             EEEEEEESSEESSEEEEEE-TEEEE------EEEEEEEEEEEEEEEEESSCCGGGTEEEEEEEEE
T ss_pred             EEEEEEEccccCCeEEEEE-ecCCc------eeeeeeeccceeeEEEEccCCHHhCcEEEEEEEC
Confidence            99999998877 7789999 11110      0011111112235899999999999999999986

...

>cd07699 IgC_L Immunoglobulin Constant domain

Probab=98.76  E-value=5.7e-08  Score=60.21  Aligned_cols=86  Identities=15%  Similarity=0.177  Sum_probs=55.7

Q ss_pred             CCeeEeC-CCceeecCCCeEEEEEEEee-CC-CCceEEEeCCEEeeeCCc-ceEEEeecCCcceEEEEEEeccCCCCCeE
Q psy7036           8 APSFTQK-PQLRQEDEGNRLIFECQLLC-NP-KPDIVWFRGETQLSEDTR-TVMKTTPIGTNKYLVALELDDVIETDAGL   83 (254)
Q Consensus         8 ~p~~~~~-~~~~~v~~g~~v~l~C~~~~-~~-~~~v~W~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~i~~~~~~d~G~   83 (254)
                      +|.+... |.......++.++|.|.+.| .| ...|+|++||+.+..... .......++.....+.|.+......+...
T Consensus         1 pP~V~v~~p~~~~~~~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~   80 (100)
T cd07699           1 APSVTIFPPSSEELEKSGKATLVCLINDFYPGFATVQWKVDGATVSSGVQTSTTEQQSDNTYSLSSYLTLTKSDWNKHKV   80 (100)
T ss_pred             CCeEEEECCCHHHHccCCCcEEEEEEEeEECCCCEEEEEECCEECcccEeccccEECCCCCEEEEEEEEEcHHHhCCCCe
Confidence            3555443 33334457888999999988 45 568999999998753321 12222234444455567676666666789


Q ss_pred             EEEEEEcCCC
Q psy7036          84 YKVKAKNKMG   93 (254)
Q Consensus        84 Y~C~~~~~~~   93 (254)
                      |+|.+.+...
T Consensus        81 ~sC~V~H~~l   90 (100)
T cd07699          81 YTCEVTHEGL   90 (100)
T ss_pred             EEEEEEecCC
Confidence            9999987653

IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins

Probab=98.75  E-value=7.7e-08  Score=58.68  Aligned_cols=65  Identities=18%  Similarity=0.139  Sum_probs=48.0

Q ss_pred             eeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcC
Q psy7036         122 RQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNE  194 (254)
Q Consensus       122 ~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~  194 (254)
                      ..+..|++++|.|... .+...+.|+|+|.......     .  ......+.+.|.+++.+|+|.|+|.+.+.
T Consensus        11 ~vV~~G~~VtL~C~~~-~~~~~f~l~k~g~~~~~~~-----~--~~~~~~~~f~i~~v~~~~~G~Y~C~~~~~   75 (91)
T cd05751          11 SVVPLGKPVTLRCQGP-YGAVEYRLYREGSTFAVKK-----P--PEPQNKAKFFIPSMKREHAGRYRCYYRSG   75 (91)
T ss_pred             CccCCCCcEEEEEecC-CCCCEEEEEECCCCccccc-----c--CCCceeEEEEccCCChhHCEEEEEEEECC
Confidence            3567899999999874 6667899999987533211     0  01112247999999999999999999886

Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),

>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)

Probab=98.75  E-value=3.6e-07  Score=57.78  Aligned_cols=82  Identities=21%  Similarity=0.392  Sum_probs=53.5

Q ss_pred             CCCeEEEEEEEeeCC----------CCeEEEEECC--Eec------------ccCCcceEEEcCC-CCceeeEEEEccCC
Q psy7036         126 DGKRLLFECRIQADP----------APTVIWSHSG--VQV------------KEDKRHKFSIDKD-GHSYFASLEIIDVT  180 (254)
Q Consensus       126 ~g~~~~l~C~~~~~~----------~~~~~W~~~~--~~~------------~~~~~~~~~~~~~-~~~~~~~l~i~~~~  180 (254)
                      .|++++|.|.....+          ...+.|+|..  +..            ......++....+ .....++|.|.+++
T Consensus         1 ~G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~   80 (110)
T cd05878           1 LSSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLR   80 (110)
T ss_pred             CCCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCC
Confidence            378999999986543          2569999852  111            0011112222111 11223589999999


Q ss_pred             CCCceeEEEEEEcCCCcceEEEEEEEe
Q psy7036         181 IEDAGKYKVTAKNELGESNATISLNFD  207 (254)
Q Consensus       181 ~~d~G~y~C~~~~~~~~~~~~~~~~v~  207 (254)
                      .+|+|.|.|.+..........+.|.|.
T Consensus        81 ~sD~G~Y~C~v~~~~~~~~~~v~l~V~  107 (110)
T cd05878          81 SSDSGVYRCEVMHGIEDEQDTVPLEVT  107 (110)
T ss_pred             hhhCEEEEEEEEeCCCcceEEEEEEEE
Confidence            999999999999876667777777775

Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi

>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins

Probab=98.75  E-value=2.7e-07  Score=57.29  Aligned_cols=36  Identities=25%  Similarity=0.331  Sum_probs=29.7

Q ss_pred             eeEEEEccCCCCCceeEEEEEEc-CCCcceEEEEEEE
Q psy7036         171 FASLEIIDVTIEDAGKYKVTAKN-ELGESNATISLNF  206 (254)
Q Consensus       171 ~~~l~i~~~~~~d~G~y~C~~~~-~~~~~~~~~~~~v  206 (254)
                      .++|.|.+++.+|+|.|.|.+.+ +.|..+..+.|.|
T Consensus        63 ~~sL~I~nv~~sD~GtY~C~v~~~p~g~~~~~~~L~V   99 (100)
T cd05888          63 DGALILRNAVQADEGKYKCRVITFPAGNFEAELVLTV   99 (100)
T ss_pred             ceEEEEecCccccceEEEEEEEeCCCCCeeeEEEEEe
Confidence            35799999999999999999997 6776666666655

Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult

>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4

Probab=98.74  E-value=2.4e-07  Score=54.40  Aligned_cols=75  Identities=12%  Similarity=0.151  Sum_probs=51.1

Q ss_pred             eeecCCCeEEEEEEEeeCC--CCceEEEeCCEEeee-CCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcCCCc
Q psy7036          18 RQEDEGNRLIFECQLLCNP--KPDIVWFRGETQLSE-DTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGE   94 (254)
Q Consensus        18 ~~v~~g~~v~l~C~~~~~~--~~~v~W~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~   94 (254)
                      ..+..|++++|+|.....+  .+.++|+..+..... ...         ..   .+|.+.+++..|+|.++|.+....-.
T Consensus         9 ~~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~~~~~~---------~~---ktL~~~qv~~qdSG~WtC~V~~~~k~   76 (88)
T cd07694           9 DHVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSKQILNQ---------DK---KTLNLVQLGPNDSGTWDCIVSVNSSE   76 (88)
T ss_pred             CeeecCCcEEEEEecCCCCCCCccEEEeCCCCccceeccC---------Cc---cEEEeceeCcccCCEEEEEEEECceE
Confidence            3678999999999995533  459999975443221 111         01   17999999999999999999755433


Q ss_pred             eEEEEEEEEe
Q psy7036          95 VAASINLNFS  104 (254)
Q Consensus        95 ~~~~~~l~v~  104 (254)
                      ....+.+.|.
T Consensus        77 ~~~~~~V~Vl   86 (88)
T cd07694          77 KTLKLDIKVL   86 (88)
T ss_pred             EEEEeeEEEE
Confidence            4445555553

Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins)

Probab=98.74  E-value=3.9e-07  Score=58.64  Aligned_cols=78  Identities=18%  Similarity=0.319  Sum_probs=50.5

Q ss_pred             eCCCceeecCCCeEEEEEEEeeCC------CCceEEEeCCE------Eee--e-------CCcceEEEeecCCcceEEEE
Q psy7036          13 QKPQLRQEDEGNRLIFECQLLCNP------KPDIVWFRGET------QLS--E-------DTRTVMKTTPIGTNKYLVAL   71 (254)
Q Consensus        13 ~~~~~~~v~~g~~v~l~C~~~~~~------~~~v~W~~~~~------~~~--~-------~~~~~~~~~~~~~~~~~~~l   71 (254)
                      +.|+.+.+.+|++|+|.|......      ...+.||+...      .+.  .       ..+.++.... ......++|
T Consensus         4 q~P~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~-~~~~~~~sL   82 (119)
T cd05712           4 WMPKSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLG-DLGKKNCSL   82 (119)
T ss_pred             cCCCEEEEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEec-CCCCCEEEE
Confidence            456778899999999999875221      34589998532      111  0       0001111110 123445689


Q ss_pred             EEeccCCCCCeEEEEEEEcC
Q psy7036          72 ELDDVIETDAGLYKVKAKNK   91 (254)
Q Consensus        72 ~i~~~~~~d~G~Y~C~~~~~   91 (254)
                      .|.+++..|+|.|.|.+...
T Consensus        83 ~I~~l~~~Dsg~Y~C~~~~~  102 (119)
T cd05712          83 LISDAQPEDSGKYFFRVELG  102 (119)
T ss_pred             EEccCChhhCeEEEEEEEcC
Confidence            99999999999999998754

Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.

>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG)

Probab=98.73  E-value=2.4e-07  Score=57.72  Aligned_cols=35  Identities=26%  Similarity=0.304  Sum_probs=29.9

Q ss_pred             eEEEEccCCCCCceeEEEEEEcCCCcceEEEEEEE
Q psy7036         172 ASLEIIDVTIEDAGKYKVTAKNELGESNATISLNF  206 (254)
Q Consensus       172 ~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~v  206 (254)
                      ++|.|.+++.+|+|.|+|.+.+..+.....+.|.|
T Consensus        65 ~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~i~l~v   99 (100)
T cd05713          65 VALRIHNVRASDEGLYTCFFQSDGFYEEATVELKV   99 (100)
T ss_pred             EEEEEEcCChhhCEEEEEEEecCCcEEEEEEEEEE
Confidence            58999999999999999999987776666766665

Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).

>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=98.73  E-value=1.9e-07  Score=56.82  Aligned_cols=85  Identities=20%  Similarity=0.322  Sum_probs=51.3

Q ss_pred             CeeEeCCCceeecCCCeEEEEEEEe-eCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEE
Q psy7036           9 PSFTQKPQLRQEDEGNRLIFECQLL-CNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVK   87 (254)
Q Consensus         9 p~~~~~~~~~~v~~g~~v~l~C~~~-~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~   87 (254)
                      |.|......... +|+.+.|+|.+. +.|.+.++|+.++..+.............+.....+.|.+..-...+...++|.
T Consensus         1 p~I~~~~~~~~~-~~~~~~~~C~s~~~~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~S~l~~~~~~~~~~~~~~C~   79 (89)
T PF08205_consen    1 PEITPNPSLLEG-EGEEVTLTCSSSGGYPPPQITWYLDGGPVVASNTTQSSSPDNGLFTVSSTLTLTPTREDHGKTLTCR   79 (89)
T ss_dssp             EEEEEECSEEES-STEEEEEEEEEEEEBS-EEEEEEETTCEECEEEEEEEEETTTTTEEEEEEEEEETTGGGTTEEEEEE
T ss_pred             CEeeCCCeeEcc-cceEEEEEEEeCCeECCeEEEEEECCCceeeeeeeeeeccCCCcceEEEEEEEEcChHHCCeEEEEE
Confidence            445444433333 378999999885 489999999999987722111111111222223345677765555667799999


Q ss_pred             EEcCCCc
Q psy7036          88 AKNKMGE   94 (254)
Q Consensus        88 ~~~~~~~   94 (254)
                      +.+....
T Consensus        80 ~~~~~~~   86 (89)
T PF08205_consen   80 ASHPALS   86 (89)
T ss_dssp             EEETTCC
T ss_pred             EECCccC
Confidence            9987643

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....

>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins

Probab=98.73  E-value=1.4e-07  Score=57.78  Aligned_cols=66  Identities=20%  Similarity=0.278  Sum_probs=45.9

Q ss_pred             CCeEEEEEEEeeCCCCeEEEEECCEeccc----------------CCcceEEEcCCCCceeeEEEEccCCCCCceeEEEE
Q psy7036         127 GKRLLFECRIQADPAPTVIWSHSGVQVKE----------------DKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVT  190 (254)
Q Consensus       127 g~~~~l~C~~~~~~~~~~~W~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~  190 (254)
                      |++++|.|.........+.|+++......                ....++....+     .+|.|.+++.+|+|.|+|.
T Consensus         1 G~~VtL~c~~~~~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~-----~sL~I~~l~~~DsG~Y~c~   75 (92)
T cd05741           1 GESVTLPVSNLPENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIYPN-----GSLLIQNLTKEDSGTYTLQ   75 (92)
T ss_pred             CCcEEEEcccCCCCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEcCC-----ceEEEccCCchhcEEEEEE
Confidence            67899999877655667999986533210                01112223233     3799999999999999999


Q ss_pred             EEcCCCc
Q psy7036         191 AKNELGE  197 (254)
Q Consensus       191 ~~~~~~~  197 (254)
                      +....+.
T Consensus        76 v~~~~~~   82 (92)
T cd05741          76 IISTNGV   82 (92)
T ss_pred             EEcCCCc
Confidence            9887643

Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf

>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins

Probab=98.70  E-value=6.3e-07  Score=55.23  Aligned_cols=36  Identities=17%  Similarity=0.354  Sum_probs=31.6

Q ss_pred             eeEEEEccCCCCCceeEEEEEEc-CCCcceEEEEEEE
Q psy7036         171 FASLEIIDVTIEDAGKYKVTAKN-ELGESNATISLNF  206 (254)
Q Consensus       171 ~~~l~i~~~~~~d~G~y~C~~~~-~~~~~~~~~~~~v  206 (254)
                      .++|.|.+++.+|+|.|+|.+.+ +.|+.+..+.|.|
T Consensus        62 daSi~i~nl~~~D~G~Y~C~v~t~P~g~~~~~~~L~V   98 (99)
T cd05886          62 DGTISLSRLELEDEGVYICEFATFPTGNRESQLNLTV   98 (99)
T ss_pred             cceEEEcCCccccCEEEEEEEEeCCCCCeEEEEEEEE
Confidence            36899999999999999999999 7888788877776

Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is

>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain

Probab=98.69  E-value=8.5e-08  Score=59.49  Aligned_cols=69  Identities=12%  Similarity=0.221  Sum_probs=45.7

Q ss_pred             eecCCCeEEEEEEEeeC--CCCceEEEeCCE--E---ee-e------CCcceEEEeecCCcceEEEEEEeccCCCCCeEE
Q psy7036          19 QEDEGNRLIFECQLLCN--PKPDIVWFRGET--Q---LS-E------DTRTVMKTTPIGTNKYLVALELDDVIETDAGLY   84 (254)
Q Consensus        19 ~v~~g~~v~l~C~~~~~--~~~~v~W~~~~~--~---~~-~------~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y   84 (254)
                      .+.+|++|+|.|...+.  ....+.||+...  .   +. .      ....++....   ......|.|.+++.+|+|.|
T Consensus         2 ~v~~G~~v~l~C~~~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~---~~~~~~L~I~~~~~~Dsg~Y   78 (98)
T cd04984           2 SVSPGETVTITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSK---SGNTASLTISGAQTEDEADY   78 (98)
T ss_pred             ccCCCCCEEEEEEEcCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEc---cCCEEEEEECCCChhhCEEE
Confidence            47799999999998654  456799997431  1   11 0      0011121111   12345799999999999999


Q ss_pred             EEEEEc
Q psy7036          85 KVKAKN   90 (254)
Q Consensus        85 ~C~~~~   90 (254)
                      .|.+.+
T Consensus        79 ~C~~~~   84 (98)
T cd04984          79 YCQVWD   84 (98)
T ss_pred             EEEEcc
Confidence            998874

IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA)

Probab=98.68  E-value=5.9e-07  Score=57.30  Aligned_cols=78  Identities=21%  Similarity=0.309  Sum_probs=48.7

Q ss_pred             CeeeecCCCeEEEEEEEeeCC----CCeEEEEEC----CEe--cc---c------CCc--ceEEEcCCCCceeeEEEEcc
Q psy7036         120 SIRQEDDGKRLLFECRIQADP----APTVIWSHS----GVQ--VK---E------DKR--HKFSIDKDGHSYFASLEIID  178 (254)
Q Consensus       120 ~~~~~~~g~~~~l~C~~~~~~----~~~~~W~~~----~~~--~~---~------~~~--~~~~~~~~~~~~~~~l~i~~  178 (254)
                      ..+.+..|++++|.|.....+    ...+.|++.    +..  +.   .      ...  .+.....+.....++|.|.+
T Consensus         6 ~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I~~   85 (115)
T cd05880           6 KEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASILIWQ   85 (115)
T ss_pred             ceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEEEEee
Confidence            456778899999999976433    235999752    111  10   0      000  11111111112235799999


Q ss_pred             CCCCCceeEEEEEEcCCCc
Q psy7036         179 VTIEDAGKYKVTAKNELGE  197 (254)
Q Consensus       179 ~~~~d~G~y~C~~~~~~~~  197 (254)
                      ++.+|+|.|+|.+.|....
T Consensus        86 v~~~D~G~Y~C~v~~~~~~  104 (115)
T cd05880          86 LQPTDNGTYTCQVKNPPDV  104 (115)
T ss_pred             CChhhCEEEEEEEEeCCCC
Confidence            9999999999999986654

Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.

>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain

Probab=98.66  E-value=2.7e-07  Score=58.53  Aligned_cols=75  Identities=17%  Similarity=0.290  Sum_probs=50.3

Q ss_pred             CCeeeecCCCeEEEEEEEeeCCCCeEEEEECCE--ecc--------------cCCcceEEEcCCCCceeeEEEEccCCCC
Q psy7036         119 PSIRQEDDGKRLLFECRIQADPAPTVIWSHSGV--QVK--------------EDKRHKFSIDKDGHSYFASLEIIDVTIE  182 (254)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~--~~~--------------~~~~~~~~~~~~~~~~~~~l~i~~~~~~  182 (254)
                      +..+.+.+|+.++|.|...+ +...+.|||...  ...              .....++....+.. ....|.|.+++.+
T Consensus         5 p~~~~v~~G~~v~l~C~~~~-~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~~L~I~~~~~~   82 (110)
T cd05899           5 PRYLIKGRGQSVTLRCSQTS-GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSL-TRSSLTIKSAEPE   82 (110)
T ss_pred             CCceEEcCCCcEEEEEEECC-CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCC-CccEEEECCCChh
Confidence            44567889999999999877 667899998532  110              00111222222211 2247999999999


Q ss_pred             CceeEEEEEEcCC
Q psy7036         183 DAGKYKVTAKNEL  195 (254)
Q Consensus       183 d~G~y~C~~~~~~  195 (254)
                      |+|.|.|.+.+..
T Consensus        83 Dsg~Y~Ca~~~~~   95 (110)
T cd05899          83 DSAVYLCASSLGG   95 (110)
T ss_pred             hCEEEEEEeeCCC
Confidence            9999999998643

IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan

Probab=98.65  E-value=8.9e-07  Score=55.63  Aligned_cols=81  Identities=20%  Similarity=0.395  Sum_probs=52.5

Q ss_pred             CCeEEEEEEEeeCC-------CCeEEEEECC-----Eec------------ccCCcceEEEcC-CCCceeeEEEEccCCC
Q psy7036         127 GKRLLFECRIQADP-------APTVIWSHSG-----VQV------------KEDKRHKFSIDK-DGHSYFASLEIIDVTI  181 (254)
Q Consensus       127 g~~~~l~C~~~~~~-------~~~~~W~~~~-----~~~------------~~~~~~~~~~~~-~~~~~~~~l~i~~~~~  181 (254)
                      |.+++|.|...-.|       .+.+.|.+..     ...            ......+..... ......++|.|.+++.
T Consensus         2 ~~~v~LpC~~~~~p~~~~~~~~~~I~W~k~~~~~~~~~~~v~v~~~~~~~~~~~y~gRvsl~~~~~~~~~asL~i~nv~~   81 (110)
T cd05902           2 SSSVLLPCVFTLPPSASSPPEGPRIKWTKLRPASGQKQRPVLVARDNVVRVAKAFQGRVSLPGYPKNRYNASLVLSRLRY   81 (110)
T ss_pred             CCcEEEeeEEEcCccccCCCCCCEEEEEEeCCCCCceEEEEEECCCCcEEEchhcccEEEeecCCCCCceEEEEECCCCH
Confidence            67889999965332       3578998741     110            011111222222 1122457999999999


Q ss_pred             CCceeEEEEEEcCCCcceEEEEEEEe
Q psy7036         182 EDAGKYKVTAKNELGESNATISLNFD  207 (254)
Q Consensus       182 ~d~G~y~C~~~~~~~~~~~~~~~~v~  207 (254)
                      +|+|.|.|.+..........+.|.|.
T Consensus        82 ~D~G~Y~C~v~~g~~~~~~~v~L~V~  107 (110)
T cd05902          82 SDSGTYRCEVVLGINDEQDTVPLEVT  107 (110)
T ss_pred             HHCEEEEEEEEECCcccEEEEEEEEE
Confidence            99999999999876666777777765

Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen

>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like

Probab=98.65  E-value=2.2e-07  Score=57.40  Aligned_cols=77  Identities=18%  Similarity=0.333  Sum_probs=50.0

Q ss_pred             CCCeEEEEEEEee-CCCCeEEEEECCEecccCC-------------c--ceEEEcCCCCceeeEEEEccCCCCCceeEEE
Q psy7036         126 DGKRLLFECRIQA-DPAPTVIWSHSGVQVKEDK-------------R--HKFSIDKDGHSYFASLEIIDVTIEDAGKYKV  189 (254)
Q Consensus       126 ~g~~~~l~C~~~~-~~~~~~~W~~~~~~~~~~~-------------~--~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C  189 (254)
                      .|++|+|.|.... .....+.|++....+....             .  .++....+    ..+|.|.+++.+|+|.|.|
T Consensus         3 ~G~sVtL~c~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~----~~sL~I~~~~~~DsG~Y~c   78 (97)
T cd05775           3 LGGSVTLPLNIPDGTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQN----DYSLQISNLKMEDAGSYRA   78 (97)
T ss_pred             cCCeEEEeCCCCCCcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCC----ceeEEECCCchHHCEEEEE
Confidence            5899999998654 3345699998643221110             0  11222121    2479999999999999999


Q ss_pred             EEEcCCCcc-eEEEEEEE
Q psy7036         190 TAKNELGES-NATISLNF  206 (254)
Q Consensus       190 ~~~~~~~~~-~~~~~~~v  206 (254)
                      .+.+..+.. ...+.|.|
T Consensus        79 ~v~~~~~~~~~~~f~L~v   96 (97)
T cd05775          79 EINTKNGVTITKEFTLHI   96 (97)
T ss_pred             EEEcCCCCeEEEEEEEEe
Confidence            999877654 44555544

Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region

>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain

Probab=98.65  E-value=9.4e-07  Score=55.66  Aligned_cols=73  Identities=12%  Similarity=0.276  Sum_probs=46.7

Q ss_pred             eecCCCeEEEEEEEee-CC-CCceEEEeCCEEeeeCCcceEEEeecC-CcceEEEEEEeccCCCCCe-EEEEEEEcCCC
Q psy7036          19 QEDEGNRLIFECQLLC-NP-KPDIVWFRGETQLSEDTRTVMKTTPIG-TNKYLVALELDDVIETDAG-LYKVKAKNKMG   93 (254)
Q Consensus        19 ~v~~g~~v~l~C~~~~-~~-~~~v~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~i~~~~~~d~G-~Y~C~~~~~~~   93 (254)
                      .+..|+.++|.|.+.| .| ...++|+|||+.+..... ......++ .....+.|.+.. ...|.| .|+|.+.+...
T Consensus        17 ~~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~~~~~-~~~p~~d~~ty~~~S~L~~~~-~~~d~~~~ytC~V~H~~l   93 (111)
T cd05772          17 RANPGQSVNFTCSAHGFSPRDITVKWLKNGNELSAEQP-NITPEGDSVSYNVTSTVQVKL-TEDDVHSQVTCEVQHRTL   93 (111)
T ss_pred             ccCCCCCEEEEEEEeeEeCCCCEEEEEECCEECccccc-ceeeCCCCCcEEEEEEEEEEC-ccccccCceEEEEEeCCC
Confidence            4557888999999988 45 468999999999864322 22222221 233344566664 344444 69999998653

IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating

>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=98.65  E-value=4.2e-07  Score=55.67  Aligned_cols=80  Identities=18%  Similarity=0.314  Sum_probs=48.0

Q ss_pred             CCeeEeCCCceeecCCCeEEEEEEEeeC-CC-CceEEEeCCEEeeeCC-cceEEEeecCCcceEEEEEEeccCCCCCeEE
Q psy7036           8 APSFTQKPQLRQEDEGNRLIFECQLLCN-PK-PDIVWFRGETQLSEDT-RTVMKTTPIGTNKYLVALELDDVIETDAGLY   84 (254)
Q Consensus         8 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~-~~-~~v~W~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y   84 (254)
                      +|.+.+.+....   |+.++|.|.+.|. |. ..++|+++++.+.... ........++.....+.|.|.   ..+.+.|
T Consensus         2 pP~v~v~~~~~~---~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~~~d~ty~~~s~l~v~---~~~~~~y   75 (93)
T cd07698           2 PPEVRVTRKRAP---DGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDVESGEILPNGDGTYQLWVTLEVP---PEDKARY   75 (93)
T ss_pred             CCEEEEEecCCC---CCcEEEEEEEEEEeCCCcEEEEEECCEECcccccccceEECCCCeEEEEEEEEEC---CCCCCEE
Confidence            466655444322   7889999999984 54 4899999996433221 112222222222333345444   4478999


Q ss_pred             EEEEEcCCC
Q psy7036          85 KVKAKNKMG   93 (254)
Q Consensus        85 ~C~~~~~~~   93 (254)
                      +|.+.+...
T Consensus        76 tC~V~H~~~   84 (93)
T cd07698          76 SCRVEHSGL   84 (93)
T ss_pred             EEEEEeCCC
Confidence            999987653

IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.

>cd00099 IgV Immunoglobulin variable domain (IgV)

Probab=98.64  E-value=2.5e-07  Score=58.23  Aligned_cols=74  Identities=16%  Similarity=0.279  Sum_probs=49.1

Q ss_pred             eecCCCeEEEEEEEeeC-CCCeEEEEECCEe-----cc----------cCCcceEEEcCCCCceeeEEEEccCCCCCcee
Q psy7036         123 QEDDGKRLLFECRIQAD-PAPTVIWSHSGVQ-----VK----------EDKRHKFSIDKDGHSYFASLEIIDVTIEDAGK  186 (254)
Q Consensus       123 ~~~~g~~~~l~C~~~~~-~~~~~~W~~~~~~-----~~----------~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~  186 (254)
                      .+..|+.++|.|..... +...+.|++....     +.          .....++....+......+|.|.+++.+|+|.
T Consensus         2 ~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~G~   81 (105)
T cd00099           2 SVSEGESVTLSCTYSGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQPEDSAV   81 (105)
T ss_pred             eecCCCCEEEEEEEeCCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCCHHHCEE
Confidence            35689999999998876 5668999985321     10          01111222222211123489999999999999


Q ss_pred             EEEEEEcCCC
Q psy7036         187 YKVTAKNELG  196 (254)
Q Consensus       187 y~C~~~~~~~  196 (254)
                      |.|.+.+..+
T Consensus        82 Y~C~v~~~~~   91 (105)
T cd00099          82 YYCAVSLSGG   91 (105)
T ss_pred             EEEEEecCCC
Confidence            9999987664

IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR)

Probab=98.64  E-value=2e-07  Score=57.86  Aligned_cols=74  Identities=14%  Similarity=0.217  Sum_probs=48.4

Q ss_pred             eeecCCCeEEEEEEEee-CCCCceEEEeCCE-----Eee------eCCcceEEEeecCCcceEEEEEEeccCCCCCeEEE
Q psy7036          18 RQEDEGNRLIFECQLLC-NPKPDIVWFRGET-----QLS------EDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYK   85 (254)
Q Consensus        18 ~~v~~g~~v~l~C~~~~-~~~~~v~W~~~~~-----~~~------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~   85 (254)
                      +.+.+|++|+|.|.... .....+.|+|...     .+.      .....++.... ........|.|.+++.+|+|.|.
T Consensus         2 v~~~~G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~-~~~~~~~~L~I~~v~~~DsG~Y~   80 (98)
T cd05716           2 VTGELGGSVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTD-DPDNGVFTVTLNQLRKEDAGWYW   80 (98)
T ss_pred             EEEEeCCeEEEEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEe-cCCCCEEEEEEcCCCHHHCEEEE
Confidence            35789999999999864 3456789998542     110      01111222211 12234558999999999999999


Q ss_pred             EEEEcCC
Q psy7036          86 VKAKNKM   92 (254)
Q Consensus        86 C~~~~~~   92 (254)
                      |.+....
T Consensus        81 C~~~~~~   87 (98)
T cd05716          81 CGVGDDG   87 (98)
T ss_pred             EEcccCC
Confidence            9987543

Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.

>smart00407 IGc1 Immunoglobulin C-Type

Probab=98.63  E-value=4.6e-07  Score=53.03  Aligned_cols=68  Identities=13%  Similarity=0.189  Sum_probs=45.1

Q ss_pred             eEEEEEEEeeC-CC-CceEEEeCCEEeeeCCc-ceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcCC
Q psy7036          25 RLIFECQLLCN-PK-PDIVWFRGETQLSEDTR-TVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKM   92 (254)
Q Consensus        25 ~v~l~C~~~~~-~~-~~v~W~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~   92 (254)
                      .++|.|.+.|. |. ..++|+|||+.+..... .......++.....+.|.|......+...|+|.+.+..
T Consensus         1 ~~~L~C~a~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~v~~~~~~~~~~~tC~V~H~~   71 (75)
T smart00407        1 KATLVCLVSGFYPPDITVTWLRNGQEVTSGVSTTDPLKNSDGTYFLSSYLTVSASTWESGDTYTCQVTHEG   71 (75)
T ss_pred             CeEEEEEEEeEeCCCCEEEEEECCEECCCCEEECceEECCCCCEEEEEEEEEccccCCCCCEEEEEEEEcC
Confidence            37899999884 54 68999999987433211 11222234444455567776666777889999998654

>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican

Probab=98.62  E-value=1.7e-06  Score=54.54  Aligned_cols=37  Identities=30%  Similarity=0.499  Sum_probs=32.7

Q ss_pred             eeEEEEccCCCCCceeEEEEEEcCCCcceEEEEEEEe
Q psy7036         171 FASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFD  207 (254)
Q Consensus       171 ~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~v~  207 (254)
                      .++|.|.+++.+|.|.|+|.+.+........+.|.|.
T Consensus        78 ~asL~i~~v~~sD~G~Y~C~V~~g~~~~~~~v~L~V~  114 (117)
T cd05901          78 DASLTIVKLRASDAGVYRCEVMHGIEDTQDTVSLDVS  114 (117)
T ss_pred             ceEEEEcccccccCEEEEEEEEECCcccEEEEEEEEE
Confidence            4689999999999999999999888777888888775

Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA

>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins

Probab=98.62  E-value=8.2e-07  Score=54.89  Aligned_cols=79  Identities=23%  Similarity=0.307  Sum_probs=49.6

Q ss_pred             CCeEEEEEEEeeCCCC-eEEEEECCEe----cc-----------cCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEE
Q psy7036         127 GKRLLFECRIQADPAP-TVIWSHSGVQ----VK-----------EDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVT  190 (254)
Q Consensus       127 g~~~~l~C~~~~~~~~-~~~W~~~~~~----~~-----------~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~  190 (254)
                      |++++|.|........ .+.|+|....    +.           .....+..... .....++|.|.+++.+|+|.|+|.
T Consensus         1 G~~vtL~C~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~sL~I~nv~~~D~G~Y~C~   79 (97)
T cd05846           1 GGNVTLSCNLTLPEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITS-LGLNSTSITIWNVTLEDEGCYKCI   79 (97)
T ss_pred             CCcEEEEEEeCCCCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcC-CCCCccEEEEeCCceeeeEEEEEE
Confidence            6789999986544332 5999984321    10           00011111111 112346899999999999999999


Q ss_pred             EE-cCCCcceEEEEEEE
Q psy7036         191 AK-NELGESNATISLNF  206 (254)
Q Consensus       191 ~~-~~~~~~~~~~~~~v  206 (254)
                      +. .+.|.....+.|+|
T Consensus        80 ~~~~p~g~~~~~~~L~v   96 (97)
T cd05846          80 FNTFPDGSKSGTMCLTV   96 (97)
T ss_pred             EEeCCCCCeeeEEEEEE
Confidence            87 46677777777765

Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.

>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE)

Probab=98.61  E-value=7.2e-07  Score=54.44  Aligned_cols=74  Identities=11%  Similarity=0.112  Sum_probs=47.3

Q ss_pred             ecCCCeEEEEEEEee-CC-CCceEEEeCCEEeeeC-CcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcCCC
Q psy7036          20 EDEGNRLIFECQLLC-NP-KPDIVWFRGETQLSED-TRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMG   93 (254)
Q Consensus        20 v~~g~~v~l~C~~~~-~~-~~~v~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~   93 (254)
                      ...++.++|.|.+.| .| ...|+|+++|..+... .........++.....+.|.+......+...|+|.|.+...
T Consensus        11 ~~~~~~~~L~C~a~gFyP~~I~vtW~~dg~~~~~~~~~s~~~~~~~~Ty~~~S~L~v~~~~w~~~~~ytC~V~H~~~   87 (94)
T cd05847          11 TGTSETIQLLCLISGYTPGTIEVEWLVDGQVATLVAASTAPQKEEGSTFSTTSELNVTQEDWKSGKTYTCKVTHQGT   87 (94)
T ss_pred             cCCCCCEEEEEEEEeEECCCCEEEEEECCEECcCceeecccEECCCCcEEEEEEEEEchHHhcCCCeEEEEEEECCe
Confidence            335667999999988 45 4689999999986332 11122222333334455666665545567799999987653

IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.

>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins

Probab=98.60  E-value=1.2e-06  Score=56.06  Aligned_cols=78  Identities=19%  Similarity=0.256  Sum_probs=48.3

Q ss_pred             CeeeecCCCeEEEEEEEeeCC----CCeEEEEECCE------ecc-c---------CCc--ceEEEcCCCCceeeEEEEc
Q psy7036         120 SIRQEDDGKRLLFECRIQADP----APTVIWSHSGV------QVK-E---------DKR--HKFSIDKDGHSYFASLEII  177 (254)
Q Consensus       120 ~~~~~~~g~~~~l~C~~~~~~----~~~~~W~~~~~------~~~-~---------~~~--~~~~~~~~~~~~~~~l~i~  177 (254)
                      ..+.+..|+.++|.|......    ...+.|++...      .+. .         ...  .++....+.....++|.|.
T Consensus         6 ~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~   85 (116)
T cd05715           6 REVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIVIH   85 (116)
T ss_pred             CeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEEEe
Confidence            455677899999999976432    24599986321      110 0         000  1111111111223589999


Q ss_pred             cCCCCCceeEEEEEEcCCCc
Q psy7036         178 DVTIEDAGKYKVTAKNELGE  197 (254)
Q Consensus       178 ~~~~~d~G~y~C~~~~~~~~  197 (254)
                      +++.+|+|.|.|.+.|....
T Consensus        86 ~v~~~D~G~Y~C~v~~~~~~  105 (116)
T cd05715          86 NLQFTDNGTYTCDVKNPPDI  105 (116)
T ss_pred             eCCcccCEEEEEEEEeCCCC
Confidence            99999999999999986553

Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2

>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins

Probab=98.59  E-value=1.3e-06  Score=53.36  Aligned_cols=77  Identities=19%  Similarity=0.335  Sum_probs=48.9

Q ss_pred             eEEEEEEEeeCC-CCeEEEEECCE----ecc-----------cCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEE
Q psy7036         129 RLLFECRIQADP-APTVIWSHSGV----QVK-----------EDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAK  192 (254)
Q Consensus       129 ~~~l~C~~~~~~-~~~~~W~~~~~----~~~-----------~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~  192 (254)
                      +++|.|.....+ ...+.|.|...    .+.           .....+.... +.....++|.|.+++.+|+|.|+|.+.
T Consensus         2 ~vtL~C~~~~~~~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~-~~~~~d~sl~i~nv~~~D~G~Y~C~v~   80 (96)
T cd05887           2 NVTLKCRIQVNETITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFK-NYSLLDATIMLENVGFSDIGVYICKAV   80 (96)
T ss_pred             CEEEEEEecCCCcEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEc-CCCCCccEEEEeCCCccccEEEEEEEE
Confidence            578999976433 23689987421    111           0111122221 111224589999999999999999976


Q ss_pred             -cCCCcceEEEEEEE
Q psy7036         193 -NELGESNATISLNF  206 (254)
Q Consensus       193 -~~~~~~~~~~~~~v  206 (254)
                       .+.|+.+.+..|.|
T Consensus        81 tfP~G~~~~~~~l~~   95 (96)
T cd05887          81 TFPLGNTQSSTTVTV   95 (96)
T ss_pred             eCCCCCeeEEEEEEE
Confidence             57788888887776

Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also

>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=98.58  E-value=8.1e-07  Score=52.94  Aligned_cols=68  Identities=15%  Similarity=0.202  Sum_probs=45.1

Q ss_pred             EEEEEEEee-CCCCeEEEEECCEecccCCcceEEEcCCC-CceeeEEEEccCCCCCceeEEEEEEcCCCc
Q psy7036         130 LLFECRIQA-DPAPTVIWSHSGVQVKEDKRHKFSIDKDG-HSYFASLEIIDVTIEDAGKYKVTAKNELGE  197 (254)
Q Consensus       130 ~~l~C~~~~-~~~~~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~  197 (254)
                      ++|.|.+.+ +|...++|+|+|..+............++ +...+.|.+..-..++...|+|.+.+....
T Consensus         2 ~~LtC~a~gf~P~~~itW~kng~~l~~~~~~~~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~~l~   71 (83)
T cd05884           2 MQLTCKTSGSKPAADIRWFKNDKEIKDVKYLKEEDANRKTFTVSSTLDFRVDRSDDGVAIICRVDHESLN   71 (83)
T ss_pred             EEEEEEeCCccCCCEEEEEECCEECcCceeeEeeCCCCCEEEEEEEEEEEcccccCCCEEEEEEechhcC
Confidence            689999887 56678999999999754332222122222 233467777655566666999999987654

Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.

>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain

Probab=98.57  E-value=6.6e-07  Score=56.37  Aligned_cols=74  Identities=19%  Similarity=0.262  Sum_probs=48.7

Q ss_pred             CCeeeecCCCeEEEEEEEeeCC-CCeEEEEECCE--e---cc-------cCCcceEEEcCCCCceeeEEEEccCCCCCce
Q psy7036         119 PSIRQEDDGKRLLFECRIQADP-APTVIWSHSGV--Q---VK-------EDKRHKFSIDKDGHSYFASLEIIDVTIEDAG  185 (254)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~~-~~~~~W~~~~~--~---~~-------~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G  185 (254)
                      +....+.+|++++|.|.+.+.. ...+.|+|...  .   +.       .....++....+.  ....|.|.+++.+|+|
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~--~~~~L~I~~~~~~Dsg   84 (106)
T cd04980           7 PATLSVSPGESATISCKASQSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSGSG--TDFTLTISRVEPEDAA   84 (106)
T ss_pred             CCcEEECCCCCEEEEEEECCCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEeccC--CEEEEEECCCChHHCE
Confidence            4456788999999999987654 56799997431  1   10       0001122222221  2247999999999999


Q ss_pred             eEEEEEEcC
Q psy7036         186 KYKVTAKNE  194 (254)
Q Consensus       186 ~y~C~~~~~  194 (254)
                      .|.|.+.+.
T Consensus        85 ~Y~Ca~~~~   93 (106)
T cd04980          85 VYYCQQYGT   93 (106)
T ss_pred             EEEEEEeCC
Confidence            999998653

IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins

Probab=98.57  E-value=1.6e-06  Score=53.01  Aligned_cols=75  Identities=16%  Similarity=0.273  Sum_probs=45.7

Q ss_pred             CeEEEEEEEee-CCCCceEEEeCCE----Eee-----------eCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEE
Q psy7036          24 NRLIFECQLLC-NPKPDIVWFRGET----QLS-----------EDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVK   87 (254)
Q Consensus        24 ~~v~l~C~~~~-~~~~~v~W~~~~~----~~~-----------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~   87 (254)
                      ++++|.|.... ....+|+|.|...    .+.           .....++......  ....+|.|.|++.+|+|.|+|.
T Consensus         1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~iavy~~~~g~~~~~~y~~Rv~f~~~~--~~d~sI~i~nvt~~D~G~Y~C~   78 (96)
T cd05889           1 EKMKLECVYPKTGVLIQVSWTKHNGSHKENIAVYHPIYGMHIEDKYRGRVYFLNST--REDMSLSFNNATEEDVGLYCCS   78 (96)
T ss_pred             CCEEEEeEcCCCCcEEEEEEEEcCCCCCceEEEEECCCCCEECccccCeEEEecCC--CCccEEEEcCCCcccCEEEEEE
Confidence            46899999853 3356789998421    111           1111222222111  1235899999999999999999


Q ss_pred             EEc-CCCceEEEEE
Q psy7036          88 AKN-KMGEVAASIN  100 (254)
Q Consensus        88 ~~~-~~~~~~~~~~  100 (254)
                      +.. ..|...+.+.
T Consensus        79 ~~t~P~g~~~~~i~   92 (96)
T cd05889          79 LVTYPQGSWEKVIE   92 (96)
T ss_pred             EEeCCCCCeEEEEE
Confidence            875 3455555443

Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.

>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin

Probab=98.57  E-value=5.4e-07  Score=55.22  Aligned_cols=81  Identities=12%  Similarity=0.118  Sum_probs=49.2

Q ss_pred             CCCceeecCCCeEEEEEEEeeC--C-CCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEc
Q psy7036          14 KPQLRQEDEGNRLIFECQLLCN--P-KPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKN   90 (254)
Q Consensus        14 ~~~~~~v~~g~~v~l~C~~~~~--~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~   90 (254)
                      .|....+..|+.++|.|.+.|.  | ...++|.|+++..............++.....+.|.+......+.-.|+|.+.+
T Consensus         5 pPs~~~l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~w~~g~~ysC~V~H   84 (96)
T cd07696           5 PPSPKQLLLTKSVKLTCLVTNLTSPEGVNVTWTRGSGEPVKASIQPPESHNNATLSVTSTLNVSTDDWISGDTFQCKVTH   84 (96)
T ss_pred             CcCHHHhccCCCeEEEEEEeCCCCCCCcEEEEEECCeEeeeEEecccccCCCCCEEEEEEEEeCHHHccCCCcEEEEEEC
Confidence            3444456678999999999887  3 347899998753321111112222333334444566665444456689999997


Q ss_pred             CCCc
Q psy7036          91 KMGE   94 (254)
Q Consensus        91 ~~~~   94 (254)
                      ....
T Consensus        85 ~~l~   88 (96)
T cd07696          85 PDLP   88 (96)
T ss_pred             CCCC
Confidence            6543

IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain

Probab=98.56  E-value=4.9e-07  Score=56.99  Aligned_cols=69  Identities=14%  Similarity=0.226  Sum_probs=44.5

Q ss_pred             eecCCCeEEEEEEEeeC-CCCceEEEeCCEE---------eee-------------CCcceEEEeecCCcceEEEEEEec
Q psy7036          19 QEDEGNRLIFECQLLCN-PKPDIVWFRGETQ---------LSE-------------DTRTVMKTTPIGTNKYLVALELDD   75 (254)
Q Consensus        19 ~v~~g~~v~l~C~~~~~-~~~~v~W~~~~~~---------~~~-------------~~~~~~~~~~~~~~~~~~~l~i~~   75 (254)
                      .+.+|++|+|.|.+.+. ....+.|||....         +..             ..++....   ........|.|.+
T Consensus         2 ~v~~G~~vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~---~~~~~~~~L~I~~   78 (107)
T cd07700           2 LVQTNNTVKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRV---TSDSSRYRLHINR   78 (107)
T ss_pred             EEcCCCCEEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEE---ECCCCEEEEEECC
Confidence            57899999999998653 3457999974221         100             01111111   1112234799999


Q ss_pred             cCCCCCeEEEEEEEc
Q psy7036          76 VIETDAGLYKVKAKN   90 (254)
Q Consensus        76 ~~~~d~G~Y~C~~~~   90 (254)
                      ++.+|+|.|.|...+
T Consensus        79 ~~~~Dsg~YyCa~~~   93 (107)
T cd07700          79 VKPEDSGTYFCMTVG   93 (107)
T ss_pred             CCHHHCEEEEEeEcC
Confidence            999999999998753

IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.

>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=98.56  E-value=1.1e-06  Score=53.84  Aligned_cols=73  Identities=12%  Similarity=0.175  Sum_probs=47.7

Q ss_pred             ecCCCeEEEEEEEee-CCCCe--EEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcc
Q psy7036         124 EDDGKRLLFECRIQA-DPAPT--VIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGES  198 (254)
Q Consensus       124 ~~~g~~~~l~C~~~~-~~~~~--~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~  198 (254)
                      +.+|+.++|.|.+.+ .|.+.  +.||+++..+.....  ...........+++.+..-+.+|...|+|.|.+.....
T Consensus        13 ~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~~~~--~~~~~~~~~~~stlt~~~~r~D~g~~~sC~A~l~l~~~   88 (100)
T cd05755          13 QPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSRQPF--GDNTKSPVNAPATITITVDREDHGANFSCETELDLRPE   88 (100)
T ss_pred             ccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEccccee--ccccCCCceeEEEEEEecchhhCCcEEEEEEEeccCcc
Confidence            568999999999886 56665  799999988854321  11111222234567776544444449999999876543

Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.

>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR)

Probab=98.56  E-value=8.1e-07  Score=55.10  Aligned_cols=73  Identities=15%  Similarity=0.248  Sum_probs=46.8

Q ss_pred             eecCCCeEEEEEEEee-CCCCeEEEEECCEe-----cc------cCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEE
Q psy7036         123 QEDDGKRLLFECRIQA-DPAPTVIWSHSGVQ-----VK------EDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVT  190 (254)
Q Consensus       123 ~~~~g~~~~l~C~~~~-~~~~~~~W~~~~~~-----~~------~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~  190 (254)
                      .+.+|++++|.|.... .....+.|+|....     +.      .....++....+.......|.|.+++.+|+|.|.|.
T Consensus         3 ~~~~G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~   82 (98)
T cd05716           3 TGELGGSVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRKEDAGWYWCG   82 (98)
T ss_pred             EEEeCCeEEEEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCCHHHCEEEEEE
Confidence            4668999999999764 34557899986421     10      011112222211112235899999999999999999


Q ss_pred             EEcCC
Q psy7036         191 AKNEL  195 (254)
Q Consensus       191 ~~~~~  195 (254)
                      +....
T Consensus        83 ~~~~~   87 (98)
T cd05716          83 VGDDG   87 (98)
T ss_pred             cccCC
Confidence            87643

Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.

>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI

Probab=98.56  E-value=1.2e-06  Score=53.73  Aligned_cols=67  Identities=18%  Similarity=0.205  Sum_probs=46.5

Q ss_pred             eeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEc
Q psy7036         122 RQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKN  193 (254)
Q Consensus       122 ~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~  193 (254)
                      ..+..|++++|.|.... ....+.|+|++......    ...........+.+.|..++.+|+|.|+|....
T Consensus        10 ~vV~~G~~VTL~C~~~~-~~~~f~l~k~g~~~~~~----~~~~~~~~~~~a~f~I~~~~~~~~G~Y~C~~~~   76 (94)
T cd05711          10 PVVPSGENVTLQCHSDI-RFDRFILYKEGRSKPVL----HLYEKHHGGFQASFPLGPVTPAHAGTYRCYGSY   76 (94)
T ss_pred             CccCCCCeEEEEEecCC-CCCEEEEEECCCCCCce----ecccccCCeEEEEEEecCCCcccCEEEEEEEEC
Confidence            35678999999998754 45679999988653211    000111123345899999999999999999753

IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.

>cd00096 Ig Immunoglobulin domain

Probab=98.55  E-value=1.3e-06  Score=50.31  Aligned_cols=66  Identities=24%  Similarity=0.410  Sum_probs=47.0

Q ss_pred             EEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcCC
Q psy7036          26 LIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKM   92 (254)
Q Consensus        26 v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~   92 (254)
                      +.|.|.+.+.+...+.|++++......... ..............|.|.+++..|.|.|.|.+.+..
T Consensus         1 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~   66 (74)
T cd00096           1 VTLTCLASGPPPPTITWLKNGKPLPSSVLT-RVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSA   66 (74)
T ss_pred             CEEEEEecCCCCCcEEEEECCEECCCcccE-EeccccCcceeEEEEEECccCcccCcEEEEEEecCc
Confidence            468999987778899999988765443221 111222233445589999999999999999998765

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain

Probab=98.54  E-value=9.1e-07  Score=56.74  Aligned_cols=75  Identities=16%  Similarity=0.290  Sum_probs=49.6

Q ss_pred             CCeeeecCCCeEEEEEEEee--CCCCeEEEEECC--Eec------cc---------CCcceEEEcCCCCceeeEEEEccC
Q psy7036         119 PSIRQEDDGKRLLFECRIQA--DPAPTVIWSHSG--VQV------KE---------DKRHKFSIDKDGHSYFASLEIIDV  179 (254)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~--~~~~~~~W~~~~--~~~------~~---------~~~~~~~~~~~~~~~~~~l~i~~~  179 (254)
                      +..+.+.+|+.++|.|.+.+  .+...+.|++..  ...      ..         ....++....+.......|.|.++
T Consensus         5 p~~~~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~   84 (116)
T cd04982           5 QLSITREESKSVTISCKVSGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTIQNL   84 (116)
T ss_pred             CCeEEeCCCCCEEEEEEEeCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEEEEC
Confidence            44567788999999999877  567789999852  110      00         011122222222112347999999


Q ss_pred             CCCCceeEEEEEEc
Q psy7036         180 TIEDAGKYKVTAKN  193 (254)
Q Consensus       180 ~~~d~G~y~C~~~~  193 (254)
                      +.+|+|.|.|.+..
T Consensus        85 ~~~Dsg~Y~C~~~~   98 (116)
T cd04982          85 EKEDSATYYCAYWE   98 (116)
T ss_pred             CHHHCEEEEEEEec
Confidence            99999999999864

IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain

Probab=98.53  E-value=3.4e-06  Score=51.55  Aligned_cols=72  Identities=17%  Similarity=0.253  Sum_probs=45.7

Q ss_pred             ecCCCeEEEEEEEee-CCC-CceEEEeCCEEeeeC-CcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcCCCc
Q psy7036          20 EDEGNRLIFECQLLC-NPK-PDIVWFRGETQLSED-TRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGE   94 (254)
Q Consensus        20 v~~g~~v~l~C~~~~-~~~-~~v~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~   94 (254)
                      +..|+.++|.|.+.| .|. ..++|++||+.+... .........++.....+.|.+.   ..+...|+|.+.+....
T Consensus        11 ~~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgTy~~~s~L~~~---~~~~~~ysC~V~H~~l~   85 (94)
T cd05766          11 GSLSHPHLLVCHVWGFYPPEITVKWFKNGQEETEGVVSTELIPNGDWTYQILVMLETT---PSRGDTYTCVVEHSSLQ   85 (94)
T ss_pred             ccCCCCeEEEEEEeeecCCCCEEEEEECCeecCCCceecceEECCCCcEEEEEEEEEc---CCCCCEEEEEEEeCCCC
Confidence            346899999999988 453 478999999987654 1122222222233333344443   45667999999976543

IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be

>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain

Probab=98.53  E-value=3.7e-06  Score=52.98  Aligned_cols=80  Identities=10%  Similarity=0.195  Sum_probs=50.0

Q ss_pred             ecCCCeEEEEEEEeeCCC--CeEEEEECCEecccCCcceEEEcCCC--CceeeEEEEccCCCCCceeEEEEEEcCCCcce
Q psy7036         124 EDDGKRLLFECRIQADPA--PTVIWSHSGVQVKEDKRHKFSIDKDG--HSYFASLEIIDVTIEDAGKYKVTAKNELGESN  199 (254)
Q Consensus       124 ~~~g~~~~l~C~~~~~~~--~~~~W~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~  199 (254)
                      ...|+.++|.|.+.++.+  ..++|++||..+..... ......++  +...+.|.+..-..++...|+|.+.+......
T Consensus        18 ~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~~~~~-~~~p~~d~~ty~~~S~L~~~~~~~d~~~~ytC~V~H~~l~~p   96 (111)
T cd05772          18 ANPGQSVNFTCSAHGFSPRDITVKWLKNGNELSAEQP-NITPEGDSVSYNVTSTVQVKLTEDDVHSQVTCEVQHRTLQAP   96 (111)
T ss_pred             cCCCCCEEEEEEEeeEeCCCCEEEEEECCEECccccc-ceeeCCCCCcEEEEEEEEEECccccccCceEEEEEeCCCCCC
Confidence            446778999999998644  47999999999864322 22223332  33445676665333333369999998765443


Q ss_pred             EEEEE
Q psy7036         200 ATISL  204 (254)
Q Consensus       200 ~~~~~  204 (254)
                      ....+
T Consensus        97 ~~~~~  101 (111)
T cd05772          97 LRGTY  101 (111)
T ss_pred             eEEEE
Confidence            33333

IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating

>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=98.52  E-value=8e-07  Score=56.75  Aligned_cols=75  Identities=17%  Similarity=0.320  Sum_probs=49.2

Q ss_pred             CeeeecCCCeEEEEEEEe-eCCCCeEEEEECCE-----ecc--cCC----------cceEEEcCCCCceeeEEEEccCCC
Q psy7036         120 SIRQEDDGKRLLFECRIQ-ADPAPTVIWSHSGV-----QVK--EDK----------RHKFSIDKDGHSYFASLEIIDVTI  181 (254)
Q Consensus       120 ~~~~~~~g~~~~l~C~~~-~~~~~~~~W~~~~~-----~~~--~~~----------~~~~~~~~~~~~~~~~l~i~~~~~  181 (254)
                      ..+.+..|+++.|.|... ......+.|++...     .+.  ...          ..+.....+......+|.|.+++.
T Consensus         9 ~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i~~l~~   88 (114)
T PF07686_consen    9 SPVTVQEGESVTLPCSYSSSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTIKNLQP   88 (114)
T ss_dssp             SEEEEETTSEEEEEEEEESSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEESSESG
T ss_pred             CeEEEecCCCEEEEEEEeCCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEECCCCc
Confidence            456788999999999988 44556799998422     111  000          001111111112235799999999


Q ss_pred             CCceeEEEEEEcC
Q psy7036         182 EDAGKYKVTAKNE  194 (254)
Q Consensus       182 ~d~G~y~C~~~~~  194 (254)
                      +|+|.|.|.+...
T Consensus        89 ~DsG~Y~C~v~~~  101 (114)
T PF07686_consen   89 SDSGTYFCQVSTS  101 (114)
T ss_dssp             GGEEEEEEEEEES
T ss_pred             CcCEEEEEEEEEC
Confidence            9999999999886

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....

>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain

Probab=98.51  E-value=1.4e-06  Score=55.16  Aligned_cols=89  Identities=10%  Similarity=0.100  Sum_probs=55.3

Q ss_pred             CCeeEeC-CCceeecCCCeEEEEEEEee-CCC-CceEEEeCCEEeeeCCcce-EEEeec-CCcceEEEEEEeccCCCC-C
Q psy7036           8 APSFTQK-PQLRQEDEGNRLIFECQLLC-NPK-PDIVWFRGETQLSEDTRTV-MKTTPI-GTNKYLVALELDDVIETD-A   81 (254)
Q Consensus         8 ~p~~~~~-~~~~~v~~g~~v~l~C~~~~-~~~-~~v~W~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~l~i~~~~~~d-~   81 (254)
                      +|.+.+. |....+.+++.++|.|.+.+ .|. ..|+|++||..+....... .....+ +.....+.|.|......+ .
T Consensus         2 ~P~V~v~~ps~~e~~~~~~~tL~Cla~gFyP~~I~V~W~kng~~l~~g~~~~~~~~~~~~gTYs~~S~L~v~~~~w~~~~   81 (115)
T cd05769           2 PPTVAIFPPSEAEIRNKRKATLVCLATGFYPDHVSLSWKVNGKEVTDGVATDPQALRENTSTYSISSRLRVSATEWFNPR   81 (115)
T ss_pred             CCEEEEECcChHHhccCCCcEEEEEEEeEeCCCcEEEEEECCEECCCCcccccceecCCCCeEEEEEEEEEChHHhccCC
Confidence            4655544 33334456788999999988 454 5899999999876543211 111111 233445567776555444 5


Q ss_pred             eEEEEEEEcCCCceE
Q psy7036          82 GLYKVKAKNKMGEVA   96 (254)
Q Consensus        82 G~Y~C~~~~~~~~~~   96 (254)
                      ..|+|.+.+......
T Consensus        82 ~~ytC~V~H~g~~~~   96 (115)
T cd05769          82 NTFTCIVQFYGGTDT   96 (115)
T ss_pred             CeEEEEEEEeCCccc
Confidence            699999997655433

IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.

>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin

Probab=98.50  E-value=5.5e-06  Score=50.33  Aligned_cols=70  Identities=13%  Similarity=0.247  Sum_probs=44.3

Q ss_pred             ecCCCeEEEEEEEee-CC-CCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcCC
Q psy7036          20 EDEGNRLIFECQLLC-NP-KPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKM   92 (254)
Q Consensus        20 v~~g~~v~l~C~~~~-~~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~   92 (254)
                      +..|...+|.|.+.| .| ...++|+|||..+............++.....+.|.+   ...+...|+|.+.+..
T Consensus        12 ~~~g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~~~~~~~~~p~~d~tyq~~s~l~~---~~~~~~~ysC~V~H~~   83 (93)
T cd05770          12 AENGKPNVLNCYVTGFHPPDIEIRLLKNGVKIPKVEQSDLSFSKDWTFYLLKSTEF---TPTKGDEYACRVRHNS   83 (93)
T ss_pred             CcCCCceEEEEEEEEEeCCCCEEEEEECCEECCCcEECcEEECCCCCEEEEEEEEE---CCCCCCeEEEEEEECC
Confidence            345777899999988 44 4578999999987622112222222333333334434   4667779999998754

IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.

>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin

Probab=98.47  E-value=1.1e-06  Score=54.52  Aligned_cols=79  Identities=10%  Similarity=0.114  Sum_probs=48.6

Q ss_pred             CCceeecCCCeEEEEEEEeeC-C-CCceEEEeCCEEeeeCCcce--EEEee--cCCcceEEEEEEeccCCCCCeEEEEEE
Q psy7036          15 PQLRQEDEGNRLIFECQLLCN-P-KPDIVWFRGETQLSEDTRTV--MKTTP--IGTNKYLVALELDDVIETDAGLYKVKA   88 (254)
Q Consensus        15 ~~~~~v~~g~~v~l~C~~~~~-~-~~~v~W~~~~~~~~~~~~~~--~~~~~--~~~~~~~~~l~i~~~~~~d~G~Y~C~~   88 (254)
                      |....+..|..++|.|.+.|. | ...++|++||+.+.......  .....  ++.....+.|.|..-...+...|+|.+
T Consensus         8 p~~~~~~~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~~~~~~~~~~~~~~~~dgTy~~~s~L~v~~~~w~~~~~ytC~V   87 (102)
T cd05768           8 PPSEELSLQETATLTCLVKGFSPSDIFVKWLQNGQPLSKQKYVTTAPMQEPGGNESYFLYSKLTVSAEDWNAGDVFTCVV   87 (102)
T ss_pred             cChHHhCcCCceEEEEEEeeEeCCCCEEEEEECCEECCcccccccCcccccCCCCeEEEEEEEEEcHHHhcCCCcEEEEe
Confidence            333345567899999999884 4 34689999999875432111  11111  233334446666544445667899999


Q ss_pred             EcCCC
Q psy7036          89 KNKMG   93 (254)
Q Consensus        89 ~~~~~   93 (254)
                      .+...
T Consensus        88 ~H~~l   92 (102)
T cd05768          88 GHEAL   92 (102)
T ss_pred             EeCCC
Confidence            87653

IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain

Probab=98.44  E-value=2.5e-06  Score=54.61  Aligned_cols=76  Identities=17%  Similarity=0.224  Sum_probs=47.6

Q ss_pred             CCCceeecCCCeEEEEEEEeeCC--CCceEEEeCC--E-E--e---eeC-C--------cceEEEeecCCcceEEEEEEe
Q psy7036          14 KPQLRQEDEGNRLIFECQLLCNP--KPDIVWFRGE--T-Q--L---SED-T--------RTVMKTTPIGTNKYLVALELD   74 (254)
Q Consensus        14 ~~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~~--~-~--~---~~~-~--------~~~~~~~~~~~~~~~~~l~i~   74 (254)
                      .|....+.+|++|+|.|...+..  ...+.|||-.  + +  +   ... .        ..++..... .......|.|.
T Consensus         3 ~~~~~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~-~~~~~~~L~I~   81 (117)
T cd04981           3 ESGPGLVKPGQSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRD-TSKSTVYLQLN   81 (117)
T ss_pred             cCCCeEEcCCCCEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEE-ccCCEEEEEEC
Confidence            46677899999999999986432  4569999732  1 1  1   000 0        011111111 11123369999


Q ss_pred             ccCCCCCeEEEEEEEc
Q psy7036          75 DVIETDAGLYKVKAKN   90 (254)
Q Consensus        75 ~~~~~d~G~Y~C~~~~   90 (254)
                      +++.+|+|.|.|.+..
T Consensus        82 ~~~~~Dsa~YyCa~~~   97 (117)
T cd04981          82 SLTPEDTAVYYCARGL   97 (117)
T ss_pred             CCCHHHCEEEEEEEEc
Confidence            9999999999998764

IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.

>PHA03271 envelope glycoprotein C; Provisional

Probab=98.44  E-value=0.00032  Score=53.26  Aligned_cols=184  Identities=16%  Similarity=0.195  Sum_probs=104.8

Q ss_pred             CCCeeEeCCCceeecCCCeEEEEEEEeeCCCCceEEEe--------------CCEEe-----------------------
Q psy7036           7 FAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFR--------------GETQL-----------------------   49 (254)
Q Consensus         7 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~--------------~~~~~-----------------------   49 (254)
                      ..|.+.-..+.+.+..+++-.+-|...-.|...-.|..              |.+.+                       
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (490)
T PHA03271         93 KMPSIVCDKEEVFVFLNKTGRFVCTLKVDPPSDNEWSNFALDLIFNPIEYHANEKNVEAARIAGLYGVPGSDYAYPRPSE  172 (490)
T ss_pred             cCCceeeccceEEEEEcCCCcEEEEEEeCCCCcchhhhheeeeeecchhhcccccchhhhhhcccccCCCccccCCCHHH
Confidence            35667777788888889999999998766655555621              11100                       


Q ss_pred             -----eeCCcceEE----------EeecCCcceEEEEEEeccCCCCCeEEEEEEEcCCCc--eEEEEEEEEeccccCCCC
Q psy7036          50 -----SEDTRTVMK----------TTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGE--VAASINLNFSREQIDGLA  112 (254)
Q Consensus        50 -----~~~~~~~~~----------~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~--~~~~~~l~v~~~~~~~~~  112 (254)
                           ..+.+..+.          ..........-.+.|.++...++|.|+-...+....  ......+.+..     .+
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~ky~i~~~ktt~~m~v~I~svD~~t~Gy~~v~~~d~~N~~i~e~~~~~~v~~-----RP  247 (490)
T PHA03271        173 LISSIRRDPQGTFWTSPSPHGNKYFIWINKTTNTMGVEIRNVDYADNGYIQVIMRDPFNRPLLDKHIYIRVCQ-----RP  247 (490)
T ss_pred             HhHHhhcCCCCccccCCCCCCceeEEeeccccceeeEEEEEeecccceEEEEEecCCCCCccccceEEEEEEe-----cC
Confidence                 000000000          001111122337899999999999775555544433  22333444432     44


Q ss_pred             CccccCCCeeeecCCCeEEEEEEEeeCCCC---eEEEEECCEecccCCcceEE----EcCCCCceeeEEEEccCCCCCce
Q psy7036         113 PTFLKKPSIRQEDDGKRLLFECRIQADPAP---TVIWSHSGVQVKEDKRHKFS----IDKDGHSYFASLEIIDVTIEDAG  185 (254)
Q Consensus       113 ~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~---~~~W~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~i~~~~~~d~G  185 (254)
                      |.+...+.  .+..|+...-.|.+..+.++   .+.|++||..+.........    ...++....+++.+.+...+..-
T Consensus       248 PsVsV~a~--PVL~Ge~YkAtC~vAnYYPP~SvrlrWf~nG~~V~~~~~rdt~~~w~d~~~g~S~VSTltl~a~~~~~PP  325 (490)
T PHA03271        248 ASVDVLAP--PVLSGENYKASCIVRHFYPPGSVYVSWRQNGNIATPRKDRDGSFWWFESGRGATLVSTITLGNSGIDPPP  325 (490)
T ss_pred             CCccccCC--ccccCCCceEEEEeeeecCCCceEEEEEeCCccccCccccceeEEEecCCCceeEEEEEEcccccCCCCC
Confidence            44444333  35579999999998775444   59999999877533221111    12334444556666554333444


Q ss_pred             eEEEEEEcCCCc
Q psy7036         186 KYKVTAKNELGE  197 (254)
Q Consensus       186 ~y~C~~~~~~~~  197 (254)
                      ..+|.+....+.
T Consensus       326 sLRCeV~W~rd~  337 (490)
T PHA03271        326 KISCLVAWKQGD  337 (490)
T ss_pred             CceEEEEEccCC
Confidence            899999876553

>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=98.44  E-value=6.1e-06  Score=50.30  Aligned_cols=81  Identities=11%  Similarity=0.157  Sum_probs=48.8

Q ss_pred             CCeeEeCCCceeecCCCeEEEEEEEee-CC-CCceEEEeCCEEeeeCCc-ceEEEeecCCcceEEEEEEeccCCCCCeEE
Q psy7036           8 APSFTQKPQLRQEDEGNRLIFECQLLC-NP-KPDIVWFRGETQLSEDTR-TVMKTTPIGTNKYLVALELDDVIETDAGLY   84 (254)
Q Consensus         8 ~p~~~~~~~~~~v~~g~~v~l~C~~~~-~~-~~~v~W~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y   84 (254)
                      +|.+.+.+.. ....|+.++|.|.+.| .| ...++|.+||..+..+.. .......++.....+.|.+.   +.+...|
T Consensus         1 ~P~V~v~~~~-~~~~~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~~~~~~~~~~~~Dgty~~~s~L~v~---~~~~~~y   76 (94)
T cd05767           1 PPEVTVFSLK-PVELGEPNTLICFVDNFFPPVLNVTWLKNGVPVTDGVSETRYYPRQDLSFQKFSYLNFT---PEEGDIY   76 (94)
T ss_pred             CCEEEEEeCC-cccCCCCeEEEEEEEEEECCcCEEEEEECCeEccCceEEeeeEeCCCCcEEEEEEEEEE---CCCCCeE
Confidence            3554443332 2345677899999998 45 467899999998754321 12222223333334455554   3456699


Q ss_pred             EEEEEcCC
Q psy7036          85 KVKAKNKM   92 (254)
Q Consensus        85 ~C~~~~~~   92 (254)
                      +|.+.+..
T Consensus        77 tC~V~H~~   84 (94)
T cd05767          77 SCIVEHWG   84 (94)
T ss_pred             EEEEEeCC
Confidence            99998754

IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom

>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain

Probab=98.43  E-value=2.4e-06  Score=54.77  Aligned_cols=76  Identities=16%  Similarity=0.277  Sum_probs=48.8

Q ss_pred             CCeeeecCCCeEEEEEEEeeC-CCCeEEEEECCE--e---cc-------cCCcceEEEcCCCCceeeEEEEccCCCCCce
Q psy7036         119 PSIRQEDDGKRLLFECRIQAD-PAPTVIWSHSGV--Q---VK-------EDKRHKFSIDKDGHSYFASLEIIDVTIEDAG  185 (254)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~-~~~~~~W~~~~~--~---~~-------~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G  185 (254)
                      +..+.+..|++++|.|..... ....+.|+|...  .   +.       .....++....+.......|.|.+++.+|+|
T Consensus         6 ~~~v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~~Dsg   85 (116)
T cd07706           6 QPDVSVQVGEEVTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISALQLEDSA   85 (116)
T ss_pred             CCceEEcCCCCEEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCCCHHHCE
Confidence            345678899999999997654 345699998421  1   00       0111223322111111347999999999999


Q ss_pred             eEEEEEEcC
Q psy7036         186 KYKVTAKNE  194 (254)
Q Consensus       186 ~y~C~~~~~  194 (254)
                      .|.|.+...
T Consensus        86 ~Y~C~~~~~   94 (116)
T cd07706          86 KYFCALSTL   94 (116)
T ss_pred             EEEEEEECC
Confidence            999999853

IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain

Probab=98.40  E-value=1.8e-06  Score=54.04  Aligned_cols=71  Identities=14%  Similarity=0.296  Sum_probs=44.8

Q ss_pred             eecCCCeEEEEEEEeeCCCCceEEEeCCE----E---ee-eCC--cc--------eEEEeecCCcceEEEEEEeccCCCC
Q psy7036          19 QEDEGNRLIFECQLLCNPKPDIVWFRGET----Q---LS-EDT--RT--------VMKTTPIGTNKYLVALELDDVIETD   80 (254)
Q Consensus        19 ~v~~g~~v~l~C~~~~~~~~~v~W~~~~~----~---~~-~~~--~~--------~~~~~~~~~~~~~~~l~i~~~~~~d   80 (254)
                      .+.+|++|+|.|.........+.|||...    .   +. ...  ..        ..+.... .......|.|.+++.+|
T Consensus         2 ~v~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~-~~~~~~~L~I~~~~~sD   80 (104)
T cd05720           2 DAELGQKVELKCEVLNSSPTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGS-RSSNSFVLTLKNFQKEN   80 (104)
T ss_pred             cccCCCeEEEEEEecCCCCCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEE-ecCCEEEEEECCCCHHH
Confidence            46799999999998654456799998431    1   11 000  00        0011110 11234579999999999


Q ss_pred             CeEEEEEEEc
Q psy7036          81 AGLYKVKAKN   90 (254)
Q Consensus        81 ~G~Y~C~~~~   90 (254)
                      +|.|.|.+.+
T Consensus        81 sgtY~Ca~~~   90 (104)
T cd05720          81 EGYYFCSVAS   90 (104)
T ss_pred             CEEEEEEEcc
Confidence            9999998763

Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.

>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=98.39  E-value=4.5e-06  Score=49.92  Aligned_cols=71  Identities=14%  Similarity=0.291  Sum_probs=47.9

Q ss_pred             cCCCeEEEEEEEee-CC-CCceEEEeCCEEeeeCCcceEEE-eecCCcceEEEEEEeccCCCCCeEEEEEEEcCCCc
Q psy7036          21 DEGNRLIFECQLLC-NP-KPDIVWFRGETQLSEDTRTVMKT-TPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGE   94 (254)
Q Consensus        21 ~~g~~v~l~C~~~~-~~-~~~v~W~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~   94 (254)
                      ..++.++|.|.+.+ .| ...|+|+++|..+.......... ..++.....+.|.+.   ..+...|+|.+.+....
T Consensus         6 ~~~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~---~~~~~~ysC~V~H~~l~   79 (83)
T PF07654_consen    6 ELGGSVTLTCLVSGFYPKDITVTWLKNGKEVTEGVETTPPPPNSDGTYSVTSSLTVT---WNSGDEYSCRVTHESLP   79 (83)
T ss_dssp             HSTSEEEEEEEEEEEBSSTEEEEEEETTEEETTTEEEEEEEEETTSEEEEEEEEEEE---TTTTGGEEEEEEETTSS
T ss_pred             cCCCCEEEEEEEEEEECCCcEEEEEeccceeeeeeeecccccccccceeeeEEEEec---CCCCCEEEEEEEECCCC
Confidence            34889999999988 45 34799999999876543332222 234444445566666   56666999999876543

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....

>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain

Probab=98.38  E-value=3.1e-06  Score=52.44  Aligned_cols=69  Identities=22%  Similarity=0.277  Sum_probs=45.6

Q ss_pred             eecCCCeEEEEEEEeeC--CCCeEEEEECCE--ec---c-------cCCcceEEEcCCCCceeeEEEEccCCCCCceeEE
Q psy7036         123 QEDDGKRLLFECRIQAD--PAPTVIWSHSGV--QV---K-------EDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYK  188 (254)
Q Consensus       123 ~~~~g~~~~l~C~~~~~--~~~~~~W~~~~~--~~---~-------~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~  188 (254)
                      .+.+|++++|.|.....  ....+.||+...  ..   .       .....++....+.  ....|.|.+++.+|+|.|.
T Consensus         2 ~v~~G~~v~l~C~~~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~~--~~~~L~I~~~~~~Dsg~Y~   79 (98)
T cd04984           2 SVSPGETVTITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKSG--NTASLTISGAQTEDEADYY   79 (98)
T ss_pred             ccCCCCCEEEEEEEcCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEccC--CEEEEEECCCChhhCEEEE
Confidence            35689999999998654  455799998432  11   0       0011123332222  2347999999999999999


Q ss_pred             EEEEc
Q psy7036         189 VTAKN  193 (254)
Q Consensus       189 C~~~~  193 (254)
                      |.+.+
T Consensus        80 C~~~~   84 (98)
T cd04984          80 CQVWD   84 (98)
T ss_pred             EEEcc
Confidence            99875

IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>PHA02987 Ig domain OX-2-like protein; Provisional

Probab=98.38  E-value=9e-06  Score=54.95  Aligned_cols=86  Identities=13%  Similarity=0.234  Sum_probs=59.0

Q ss_pred             eeeecCCCeEEEEEEEe-eCCCCeEEEEECCEecc----------cCCcceEEE-cCCCCceeeEEEEccCCCCCceeEE
Q psy7036         121 IRQEDDGKRLLFECRIQ-ADPAPTVIWSHSGVQVK----------EDKRHKFSI-DKDGHSYFASLEIIDVTIEDAGKYK  188 (254)
Q Consensus       121 ~~~~~~g~~~~l~C~~~-~~~~~~~~W~~~~~~~~----------~~~~~~~~~-~~~~~~~~~~l~i~~~~~~d~G~y~  188 (254)
                      .+.+.+|+++.|.|... +...+.+.|+|....+.          .....++.. ..+  ...+.|.|.+++.+|+|.|+
T Consensus        24 ~v~V~ege~VtLsCs~t~s~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s--~~~StItIknVt~sDeGcY~  101 (189)
T PHA02987         24 KITVSEHVNVKISCNKTSSFNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKS--FNESTILIKNVSLKDNGCYT  101 (189)
T ss_pred             EEEEcCCCCEEEEEecCCCCccceEEEEEcCCCEEEEecCCcEEChhhcCeEEEeccC--CCcceEEEEeCChhhCeEEE
Confidence            45678899999999974 55567899998643221          111112221 111  12358999999999999999


Q ss_pred             EEEEc-CCC-cceEEEEEEEec
Q psy7036         189 VTAKN-ELG-ESNATISLNFDS  208 (254)
Q Consensus       189 C~~~~-~~~-~~~~~~~~~v~~  208 (254)
                      |.+.. +.| ..+.+..|.|..
T Consensus       102 C~F~tfp~G~~~~gt~CLtVt~  123 (189)
T PHA02987        102 CIFNTLLSKNNEKGVVCLNVTT  123 (189)
T ss_pred             EEEEecCCCCCceeEEEEEEEc
Confidence            99874 456 677888888875

>cd00096 Ig Immunoglobulin domain

Probab=98.37  E-value=7e-06  Score=47.08  Aligned_cols=66  Identities=26%  Similarity=0.478  Sum_probs=45.9

Q ss_pred             EEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCC
Q psy7036         130 LLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNEL  195 (254)
Q Consensus       130 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~  195 (254)
                      +.|.|.+.+.+...+.|++++.......................|.|.++...|.|.|.|.+.+..
T Consensus         1 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~   66 (74)
T cd00096           1 VTLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSA   66 (74)
T ss_pred             CEEEEEecCCCCCcEEEEECCEECCCcccEEeccccCcceeEEEEEECccCcccCcEEEEEEecCc
Confidence            368899888677789999988765433221111112222344589999999999999999998765

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=98.36  E-value=3.6e-06  Score=51.13  Aligned_cols=72  Identities=15%  Similarity=0.295  Sum_probs=46.2

Q ss_pred             CCeEEEEEEEe-eCCCCeEEEEECCEecccCCcceEEEcCCC-CceeeEEEEccCCCCCceeEEEEEEcCCCcc
Q psy7036         127 GKRLLFECRIQ-ADPAPTVIWSHSGVQVKEDKRHKFSIDKDG-HSYFASLEIIDVTIEDAGKYKVTAKNELGES  198 (254)
Q Consensus       127 g~~~~l~C~~~-~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~  198 (254)
                      |+.+.+.|.+. ++|.+.+.|+.++..+............++ ....+.|.+..-+.++...++|.|.++....
T Consensus        14 ~~~~~~~C~s~~~~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~S~l~~~~~~~~~~~~~~C~~~~~~~~~   87 (89)
T PF08205_consen   14 GEEVTLTCSSSGGYPPPQITWYLDGGPVVASNTTQSSSPDNGLFTVSSTLTLTPTREDHGKTLTCRASHPALSQ   87 (89)
T ss_dssp             TEEEEEEEEEEEEBS-EEEEEEETTCEECEEEEEEEEETTTTTEEEEEEEEEETTGGGTTEEEEEEEEETTCCE
T ss_pred             ceEEEEEEEeCCeECCeEEEEEECCCceeeeeeeeeeccCCCcceEEEEEEEEcChHHCCeEEEEEEECCccCC
Confidence            77999999755 688899999999887722221122222222 2334677776555555669999999876543

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....

>smart00407 IGc1 Immunoglobulin C-Type

Probab=98.35  E-value=9.5e-06  Score=47.44  Aligned_cols=66  Identities=21%  Similarity=0.275  Sum_probs=43.3

Q ss_pred             EEEEEEEeeC-CC-CeEEEEECCEecccCC-cceEEEcCCC-CceeeEEEEccCCCCCceeEEEEEEcCC
Q psy7036         130 LLFECRIQAD-PA-PTVIWSHSGVQVKEDK-RHKFSIDKDG-HSYFASLEIIDVTIEDAGKYKVTAKNEL  195 (254)
Q Consensus       130 ~~l~C~~~~~-~~-~~~~W~~~~~~~~~~~-~~~~~~~~~~-~~~~~~l~i~~~~~~d~G~y~C~~~~~~  195 (254)
                      ++|.|.+.++ |+ ..+.|+|+|+.+.... ........++ +...+.|.+.....++...|+|.+.+..
T Consensus         2 ~~L~C~a~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~v~~~~~~~~~~~tC~V~H~~   71 (75)
T smart00407        2 ATLVCLVSGFYPPDITVTWLRNGQEVTSGVSTTDPLKNSDGTYFLSSYLTVSASTWESGDTYTCQVTHEG   71 (75)
T ss_pred             eEEEEEEEeEeCCCCEEEEEECCEECCCCEEECceEECCCCCEEEEEEEEEccccCCCCCEEEEEEEEcC
Confidence            6899999986 43 4799999998743321 1122222333 3445677776666667779999998764

>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins)

Probab=98.33  E-value=1.1e-05  Score=51.95  Aligned_cols=76  Identities=25%  Similarity=0.309  Sum_probs=48.0

Q ss_pred             CCeeeecCCCeEEEEEEEeeCC------CCeEEEEECCEe------cc--c-------CCcceEEEcCCCCceeeEEEEc
Q psy7036         119 PSIRQEDDGKRLLFECRIQADP------APTVIWSHSGVQ------VK--E-------DKRHKFSIDKDGHSYFASLEII  177 (254)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~~------~~~~~W~~~~~~------~~--~-------~~~~~~~~~~~~~~~~~~l~i~  177 (254)
                      +..+.+..|+.++|.|......      ...+.|++....      +.  .       ....++....+.....+.|.|.
T Consensus         6 P~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~sL~I~   85 (119)
T cd05712           6 PKSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCSLLIS   85 (119)
T ss_pred             CCEEEEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEEEEEc
Confidence            3456788899999999864221      245899985321      10  0       0011222221222334689999


Q ss_pred             cCCCCCceeEEEEEEcC
Q psy7036         178 DVTIEDAGKYKVTAKNE  194 (254)
Q Consensus       178 ~~~~~d~G~y~C~~~~~  194 (254)
                      +++.+|+|.|.|.+...
T Consensus        86 ~l~~~Dsg~Y~C~~~~~  102 (119)
T cd05712          86 DAQPEDSGKYFFRVELG  102 (119)
T ss_pred             cCChhhCeEEEEEEEcC
Confidence            99999999999998764

Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.

>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin

Probab=98.33  E-value=1.3e-05  Score=49.06  Aligned_cols=70  Identities=10%  Similarity=0.116  Sum_probs=43.6

Q ss_pred             CCCeEEEEEEEee-CC-CCceEEEeCCEEeeeCCc-ceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcCC
Q psy7036          22 EGNRLIFECQLLC-NP-KPDIVWFRGETQLSEDTR-TVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKM   92 (254)
Q Consensus        22 ~g~~v~l~C~~~~-~~-~~~v~W~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~   92 (254)
                      .++.++|.|.+.| .| ...|+|+|||+. ..+.. .......++.....+.|.+..........|+|.+.+..
T Consensus        15 ~~~~~~L~C~a~gFyP~~i~vtW~k~g~~-~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~ytC~V~H~~   87 (95)
T cd04985          15 SSDSVTLGCLATGFLPEPVTFTWNSGSNS-TSGVKTYPAVLQSGGLYTASSQLTVPASEWKGKESFYCKVEHPS   87 (95)
T ss_pred             CCCcEEEEEEEeeEECCCcEEEEeECCEE-CCCcEECCCEeCCCCCEEEEEEEEEeHHHcCCCCcEEEEEEeCC
Confidence            5678999999988 34 457899999997 33211 11111113334444566666544334668999998764

IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd07699 IgC_L Immunoglobulin Constant domain

Probab=98.32  E-value=2.9e-06  Score=52.57  Aligned_cols=75  Identities=17%  Similarity=0.181  Sum_probs=48.3

Q ss_pred             ecCCCeEEEEEEEeeCCC--CeEEEEECCEecccCCc-ceEEEcCCC-CceeeEEEEccCCCCCceeEEEEEEcCCCcc
Q psy7036         124 EDDGKRLLFECRIQADPA--PTVIWSHSGVQVKEDKR-HKFSIDKDG-HSYFASLEIIDVTIEDAGKYKVTAKNELGES  198 (254)
Q Consensus       124 ~~~g~~~~l~C~~~~~~~--~~~~W~~~~~~~~~~~~-~~~~~~~~~-~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~  198 (254)
                      ...++.++|.|.+.++.+  ..+.|++||..+..... .......++ +...+.|.+..-...+...|+|.+.+.....
T Consensus        14 ~~~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~~sC~V~H~~l~~   92 (100)
T cd07699          14 LEKSGKATLVCLINDFYPGFATVQWKVDGATVSSGVQTSTTEQQSDNTYSLSSYLTLTKSDWNKHKVYTCEVTHEGLSS   92 (100)
T ss_pred             HccCCCcEEEEEEEeEECCCCEEEEEECCEECcccEeccccEECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEecCCCC
Confidence            334677899999998543  46899999998753311 112222233 3445667776555555679999999875433

IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin

Probab=98.32  E-value=3e-06  Score=52.62  Aligned_cols=72  Identities=10%  Similarity=0.146  Sum_probs=45.4

Q ss_pred             CCCeEEEEEEEeeCCCC--eEEEEECCEecccCCcce--EEEcC---CCCceeeEEEEccCCCCCceeEEEEEEcCCCc
Q psy7036         126 DGKRLLFECRIQADPAP--TVIWSHSGVQVKEDKRHK--FSIDK---DGHSYFASLEIIDVTIEDAGKYKVTAKNELGE  197 (254)
Q Consensus       126 ~g~~~~l~C~~~~~~~~--~~~W~~~~~~~~~~~~~~--~~~~~---~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~  197 (254)
                      .+..++|.|.+.|+.+.  .+.|+++|..+.......  .....   ..+...+.|.+..-...+...|+|.+.+....
T Consensus        15 ~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~~~~~~~~~~~~~~~~dgTy~~~s~L~v~~~~w~~~~~ytC~V~H~~l~   93 (102)
T cd05768          15 LQETATLTCLVKGFSPSDIFVKWLQNGQPLSKQKYVTTAPMQEPGGNESYFLYSKLTVSAEDWNAGDVFTCVVGHEALP   93 (102)
T ss_pred             cCCceEEEEEEeeEeCCCCEEEEEECCEECCcccccccCcccccCCCCeEEEEEEEEEcHHHhcCCCcEEEEeEeCCCC
Confidence            46779999999996544  579999999875432111  11111   22334566766544444556899999886543

IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4

Probab=98.31  E-value=1.1e-05  Score=47.46  Aligned_cols=74  Identities=16%  Similarity=0.343  Sum_probs=49.1

Q ss_pred             eecCCCeEEEEEEEeeCC--CCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcceE
Q psy7036         123 QEDDGKRLLFECRIQADP--APTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNA  200 (254)
Q Consensus       123 ~~~~g~~~~l~C~~~~~~--~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~  200 (254)
                      .+..|++++|+|.....+  .+.+.|...+.....     . ...+..    +|.+..+...|+|.++|.+.........
T Consensus        10 ~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~~-----~-~~~~~k----tL~~~qv~~qdSG~WtC~V~~~~k~~~~   79 (88)
T cd07694          10 HVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSKQ-----I-LNQDKK----TLNLVQLGPNDSGTWDCIVSVNSSEKTL   79 (88)
T ss_pred             eeecCCcEEEEEecCCCCCCCccEEEeCCCCccce-----e-ccCCcc----EEEeceeCcccCCEEEEEEEECceEEEE
Confidence            566899999999986544  448999864433211     0 011111    7999999999999999999755333444


Q ss_pred             EEEEEE
Q psy7036         201 TISLNF  206 (254)
Q Consensus       201 ~~~~~v  206 (254)
                      .+.+.|
T Consensus        80 ~~~V~V   85 (88)
T cd07694          80 KLDIKV   85 (88)
T ss_pred             EeeEEE
Confidence            444444

Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin

Probab=98.31  E-value=5.3e-06  Score=50.85  Aligned_cols=77  Identities=9%  Similarity=0.070  Sum_probs=46.3

Q ss_pred             eecCCCeEEEEEEEeeC-CCC--eEEEEECCEecccCCcceEEEcCCC-CceeeEEEEccCCCCCceeEEEEEEcCCCcc
Q psy7036         123 QEDDGKRLLFECRIQAD-PAP--TVIWSHSGVQVKEDKRHKFSIDKDG-HSYFASLEIIDVTIEDAGKYKVTAKNELGES  198 (254)
Q Consensus       123 ~~~~g~~~~l~C~~~~~-~~~--~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~  198 (254)
                      .+..++.++|.|.+.++ .++  .+.|.|+++..............++ +...+.|.+..-...+.-.|+|.+.+.....
T Consensus        10 ~l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~w~~g~~ysC~V~H~~l~~   89 (96)
T cd07696          10 QLLLTKSVKLTCLVTNLTSPEGVNVTWTRGSGEPVKASIQPPESHNNATLSVTSTLNVSTDDWISGDTFQCKVTHPDLPT   89 (96)
T ss_pred             HhccCCCeEEEEEEeCCCCCCCcEEEEEECCeEeeeEEecccccCCCCCEEEEEEEEeCHHHccCCCcEEEEEECCCCCC
Confidence            34457889999999998 443  5899998753321111112222333 2344566666544444558999999876544


Q ss_pred             e
Q psy7036         199 N  199 (254)
Q Consensus       199 ~  199 (254)
                      .
T Consensus        90 p   90 (96)
T cd07696          90 P   90 (96)
T ss_pred             C
Confidence            3

IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain

Probab=98.29  E-value=8.3e-06  Score=49.84  Aligned_cols=71  Identities=11%  Similarity=0.088  Sum_probs=41.4

Q ss_pred             eecCCCeEEEEEEEee-CC-CCceEEEeCCEEeeeCCcceEEEeecC-CcceEEEEEEeccCCCCCeEEEEEEEcCC
Q psy7036          19 QEDEGNRLIFECQLLC-NP-KPDIVWFRGETQLSEDTRTVMKTTPIG-TNKYLVALELDDVIETDAGLYKVKAKNKM   92 (254)
Q Consensus        19 ~v~~g~~v~l~C~~~~-~~-~~~v~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~   92 (254)
                      .+..+..++|.|.+.| .| ...++|.+||..+..+..... ...++ .....+.|.+..-.  ....|+|.+.+..
T Consensus        12 e~~~~~~~tL~C~a~gFyP~~I~v~W~kng~~~~~~~~~~~-~~~~~dty~~~S~L~vt~~~--~~~~ysC~V~H~g   85 (96)
T cd07697          12 EIEKQGQGIYLCLLENFFPDVIQVHWREGNSPSILGSQKSE-KDKDNDVYSTTSWLTVTKDS--LGKKFRCIYKHEG   85 (96)
T ss_pred             HHccCCCEEEEEEEEEEeCCCeEEEEEECCEECcCCeEecc-EecCCCEEEEEEEEEECchh--CCCeEEEEEEECC
Confidence            4445678999999988 44 457899999998654322111 11122 22223344444221  2345999998743

IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.

>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=98.28  E-value=1.3e-05  Score=49.08  Aligned_cols=70  Identities=16%  Similarity=0.127  Sum_probs=43.1

Q ss_pred             CCCeEEEEEEE-eeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcCCCc
Q psy7036          22 EGNRLIFECQL-LCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGE   94 (254)
Q Consensus        22 ~g~~v~l~C~~-~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~   94 (254)
                      ......+.|.+ .|.|.+.|+|+++.   ............++.....+.|.+......|...|+|++.+....
T Consensus        14 ~~~~~va~C~s~~gkP~a~ItW~~~~---~~~~~~~~~~~~~g~~tv~S~l~~~p~~~d~G~~~tC~v~h~~l~   84 (95)
T cd05719          14 GEPVTVATCVSANGKPPATISWETTL---GGEAETQSKENPNGTVTVTSEYRLVPSREANGKELTCVVSHPTLQ   84 (95)
T ss_pred             CCccEEEEEECCCCcCCCEEEEEeCC---CCcceeEeecCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccC
Confidence            34457789998 56899999999971   111111111122223334557777655556666999999987644

Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus

>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain

Probab=98.27  E-value=7.4e-06  Score=51.84  Aligned_cols=77  Identities=9%  Similarity=0.147  Sum_probs=49.3

Q ss_pred             CCCeEEEEEEEeeCCCC--eEEEEECCEecccCCcc-eEEEcCC--CCceeeEEEEccCCCCC-ceeEEEEEEcCCCcce
Q psy7036         126 DGKRLLFECRIQADPAP--TVIWSHSGVQVKEDKRH-KFSIDKD--GHSYFASLEIIDVTIED-AGKYKVTAKNELGESN  199 (254)
Q Consensus       126 ~g~~~~l~C~~~~~~~~--~~~W~~~~~~~~~~~~~-~~~~~~~--~~~~~~~l~i~~~~~~d-~G~y~C~~~~~~~~~~  199 (254)
                      .+..++|.|.+.++.+.  .+.|++|+..+...... ......+  .+...+.|.+..-...+ ...|+|.+.+......
T Consensus        17 ~~~~~tL~Cla~gFyP~~I~V~W~kng~~l~~g~~~~~~~~~~~~gTYs~~S~L~v~~~~w~~~~~~ytC~V~H~g~~~~   96 (115)
T cd05769          17 NKRKATLVCLATGFYPDHVSLSWKVNGKEVTDGVATDPQALRENTSTYSISSRLRVSATEWFNPRNTFTCIVQFYGGTDT   96 (115)
T ss_pred             cCCCcEEEEEEEeEeCCCcEEEEEECCEECCCCcccccceecCCCCeEEEEEEEEEChHHhccCCCeEEEEEEEeCCccc
Confidence            45678999999986443  68999999887643211 1122222  23445677777655444 4589999998766555


Q ss_pred             EEE
Q psy7036         200 ATI  202 (254)
Q Consensus       200 ~~~  202 (254)
                      ...
T Consensus        97 ~~~   99 (115)
T cd05769          97 DKW   99 (115)
T ss_pred             eee
Confidence            443

IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.

>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins

Probab=98.27  E-value=2.3e-05  Score=47.90  Aligned_cols=33  Identities=27%  Similarity=0.314  Sum_probs=26.7

Q ss_pred             eEEEEccCCCCCceeEEEEEEc-CCCcceEEEEE
Q psy7036         172 ASLEIIDVTIEDAGKYKVTAKN-ELGESNATISL  204 (254)
Q Consensus       172 ~~l~i~~~~~~d~G~y~C~~~~-~~~~~~~~~~~  204 (254)
                      ++|.|.+++.+|+|.|+|.+.. +.|...+.+.+
T Consensus        60 ~sI~i~nvt~~D~G~Y~C~~~t~P~g~~~~~i~~   93 (96)
T cd05889          60 MSLSFNNATEEDVGLYCCSLVTYPQGSWEKVIEV   93 (96)
T ss_pred             cEEEEcCCCcccCEEEEEEEEeCCCCCeEEEEEE
Confidence            5899999999999999999975 46666665543

Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.

>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=98.24  E-value=3e-05  Score=47.45  Aligned_cols=68  Identities=19%  Similarity=0.318  Sum_probs=42.6

Q ss_pred             CCeEEEEEEEeeCCCC--eEEEEECCEecccCC-cceEEEcCCC-CceeeEEEEccCCCCCceeEEEEEEcCCCc
Q psy7036         127 GKRLLFECRIQADPAP--TVIWSHSGVQVKEDK-RHKFSIDKDG-HSYFASLEIIDVTIEDAGKYKVTAKNELGE  197 (254)
Q Consensus       127 g~~~~l~C~~~~~~~~--~~~W~~~~~~~~~~~-~~~~~~~~~~-~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~  197 (254)
                      ++.++|.|.+.|+.++  .+.|.+++....... ........++ +...+.|.+..   .+.+.|+|.+.+....
T Consensus        14 ~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~~~d~ty~~~s~l~v~~---~~~~~ytC~V~H~~~~   85 (93)
T cd07698          14 DGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDVESGEILPNGDGTYQLWVTLEVPP---EDKARYSCRVEHSGLK   85 (93)
T ss_pred             CCcEEEEEEEEEEeCCCcEEEEEECCEECcccccccceEECCCCeEEEEEEEEECC---CCCCEEEEEEEeCCCC
Confidence            6679999999996443  799999986432221 1122223332 23344565554   3678999999886543

IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.

>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=98.24  E-value=2.3e-05  Score=46.82  Aligned_cols=69  Identities=22%  Similarity=0.297  Sum_probs=46.0

Q ss_pred             CCCeEEEEEEEeeCCC-C-eEEEEECCEecccCCcceEEE-cCCC-CceeeEEEEccCCCCCceeEEEEEEcCCCc
Q psy7036         126 DGKRLLFECRIQADPA-P-TVIWSHSGVQVKEDKRHKFSI-DKDG-HSYFASLEIIDVTIEDAGKYKVTAKNELGE  197 (254)
Q Consensus       126 ~g~~~~l~C~~~~~~~-~-~~~W~~~~~~~~~~~~~~~~~-~~~~-~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~  197 (254)
                      .+..+.|.|.+.++.+ . .+.|++++..+.......... ..++ +...+.|.+.   ..+...|+|.+.+....
T Consensus         7 ~~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~---~~~~~~ysC~V~H~~l~   79 (83)
T PF07654_consen    7 LGGSVTLTCLVSGFYPKDITVTWLKNGKEVTEGVETTPPPPNSDGTYSVTSSLTVT---WNSGDEYSCRVTHESLP   79 (83)
T ss_dssp             STSEEEEEEEEEEEBSSTEEEEEEETTEEETTTEEEEEEEEETTSEEEEEEEEEEE---TTTTGGEEEEEEETTSS
T ss_pred             CCCCEEEEEEEEEEECCCcEEEEEeccceeeeeeeecccccccccceeeeEEEEec---CCCCCEEEEEEEECCCC
Confidence            3788999999988543 3 599999999876543322222 2233 3444566666   45555899999987554

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....

>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin

Probab=98.23  E-value=6.6e-06  Score=50.33  Aligned_cols=84  Identities=17%  Similarity=0.221  Sum_probs=51.5

Q ss_pred             CCeeE-eCCCceeecCCCeEEEEEEEee-C-C-CCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeE
Q psy7036           8 APSFT-QKPQLRQEDEGNRLIFECQLLC-N-P-KPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGL   83 (254)
Q Consensus         8 ~p~~~-~~~~~~~v~~g~~v~l~C~~~~-~-~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~   83 (254)
                      .|.+. ..|....+..+..++|.|.+.+ . | ...|+|.++|.. .. .........++.....+.|.+..-.......
T Consensus         3 ~PsV~l~pPs~e~l~~~~~atLtClV~~f~~P~~i~V~W~~~g~~-~~-~~t~~~~~~dgTys~~S~L~v~~~~W~~g~~   80 (99)
T cd04986           3 KPSLSLQRPALEDLLLGSSASLTCTLSGLRDPEGAVFTWTPSGGK-EA-VQTSAESDQCGCYSVSSVLPGCAEEWNKGEP   80 (99)
T ss_pred             CCEEEEECcChHHhCcCCccEEEEEEeccCCCCCeEEEEEECCcc-Cc-EEcCcccCCCCCEEEEEEEEeCHHHhcCCCe
Confidence            45543 3454445557889999999988 3 4 457999999875 11 1111122234444555567766444444457


Q ss_pred             EEEEEEcCCC
Q psy7036          84 YKVKAKNKMG   93 (254)
Q Consensus        84 Y~C~~~~~~~   93 (254)
                      |+|.|.+...
T Consensus        81 ytC~V~H~~l   90 (99)
T cd04986          81 FACTVTHPEG   90 (99)
T ss_pred             EEEEEECCCc
Confidence            9999987653

IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE)

Probab=98.23  E-value=1.4e-05  Score=48.78  Aligned_cols=72  Identities=11%  Similarity=0.132  Sum_probs=45.3

Q ss_pred             CCCeEEEEEEEeeCCC--CeEEEEECCEecccC-CcceEEEcCCC-CceeeEEEEccCCCCCceeEEEEEEcCCCc
Q psy7036         126 DGKRLLFECRIQADPA--PTVIWSHSGVQVKED-KRHKFSIDKDG-HSYFASLEIIDVTIEDAGKYKVTAKNELGE  197 (254)
Q Consensus       126 ~g~~~~l~C~~~~~~~--~~~~W~~~~~~~~~~-~~~~~~~~~~~-~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~  197 (254)
                      ....+.|.|.+.++.+  ..+.|.++|..+... .........++ +...+.|.+..-...+...|+|.+.+....
T Consensus        13 ~~~~~~L~C~a~gFyP~~I~vtW~~dg~~~~~~~~~s~~~~~~~~Ty~~~S~L~v~~~~w~~~~~ytC~V~H~~~~   88 (94)
T cd05847          13 TSETIQLLCLISGYTPGTIEVEWLVDGQVATLVAASTAPQKEEGSTFSTTSELNVTQEDWKSGKTYTCKVTHQGTT   88 (94)
T ss_pred             CCCCEEEEEEEEeEECCCCEEEEEECCEECcCceeecccEECCCCcEEEEEEEEEchHHhcCCCeEEEEEEECCee
Confidence            3456899999998644  468999999886332 11112222222 333456666654444566999999986544

IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.

>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain

Probab=98.23  E-value=3.4e-06  Score=46.55  Aligned_cols=53  Identities=19%  Similarity=0.347  Sum_probs=36.5

Q ss_pred             ecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcC
Q psy7036          20 EDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNK   91 (254)
Q Consensus        20 v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~   91 (254)
                      -..|.+|+|+|+..+.   .+.|++++..+.....               .+.+.+-. +++|.|.|.+.+.
T Consensus         4 sisGTtVtlTCP~~~~---~i~W~~n~~~~~g~~~---------------~~~~~~~~-e~~G~Y~C~~~~~   56 (65)
T cd07692           4 SISGTTVTVTCPLSGD---DIKWKKNDQVSQGSDE---------------KYLSLNHF-SSSGYYHCTADNA   56 (65)
T ss_pred             EEeccEEEEECCCCCC---CceEEeCCccCCCCCc---------------eEEeeccC-CCCceEEEEeCCC
Confidence            3579999999976422   2999999865543221               24444555 8899999998643

Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins

Probab=98.21  E-value=1.9e-05  Score=48.19  Aligned_cols=76  Identities=14%  Similarity=0.098  Sum_probs=44.8

Q ss_pred             CCeEEEEEEEe-eCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcCCCceEEEEEE
Q psy7036          23 GNRLIFECQLL-CNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINL  101 (254)
Q Consensus        23 g~~v~l~C~~~-~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l  101 (254)
                      ...+.++|.+. +.|.+.|+|+++...   ..........++.....+.|.+......|...|+|++.+........+.+
T Consensus        15 ~~~~va~C~s~~gkPaa~IsW~~~~~g---~~~~~~~~~~~gt~tv~S~l~~~P~~~d~Gk~ltC~v~h~al~~~~~~~~   91 (95)
T cd07703          15 IPVPVAKCVSANGRPPARISWSSTLGG---NANTTSKENGDGTVTVTSEYSLVPTPEANGKEVTCKVEHETLQEPQLLPV   91 (95)
T ss_pred             CccEEEEEEcCCCCCCcEEEEEcCCCC---CeeEEEEeCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCCCeEEEE
Confidence            34578999985 589999999997211   11111111112222334567776555666669999999876544333333

Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.

>smart00406 IGv Immunoglobulin V-Type

Probab=98.19  E-value=7.2e-06  Score=48.73  Aligned_cols=63  Identities=16%  Similarity=0.207  Sum_probs=38.6

Q ss_pred             eEEEEEEEeeCCC--CceEEEeCCE-----Eeee-----------CCcceEEEeecCCcceEEEEEEeccCCCCCeEEEE
Q psy7036          25 RLIFECQLLCNPK--PDIVWFRGET-----QLSE-----------DTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKV   86 (254)
Q Consensus        25 ~v~l~C~~~~~~~--~~v~W~~~~~-----~~~~-----------~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C   86 (254)
                      +|+|.|.+.....  ..+.|++...     .+..           ....++...... ......|.|.+++.+|+|.|.|
T Consensus         1 ~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~-~~~~~~L~i~~~~~~D~G~Y~C   79 (81)
T smart00406        1 SVTLSCKASGFTFSSYYVSWVRQPPGKGLEWLGYIGSSGSTYYQQSYKGRVTISKDT-SKNDVSLTISNLRVEDTGTYYC   79 (81)
T ss_pred             CEEEEEEEeccccceeEEEEEEeCCCCCeEEEEEEcCCCcEEECcccCCcEEEEecC-cCCEEEEEEcCCCHHHCEEEEE
Confidence            4789999875443  3789998431     1111           011122222111 1345689999999999999999


Q ss_pred             EE
Q psy7036          87 KA   88 (254)
Q Consensus        87 ~~   88 (254)
                      .+
T Consensus        80 ~v   81 (81)
T smart00406       80 AV   81 (81)
T ss_pred             cC
Confidence            63

>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain

Probab=98.17  E-value=2e-05  Score=49.67  Aligned_cols=69  Identities=14%  Similarity=0.233  Sum_probs=43.6

Q ss_pred             eecCCCeEEEEEEEeeC-CCCeEEEEECCEe---------cc-c------------CCcceEEEcCCCCceeeEEEEccC
Q psy7036         123 QEDDGKRLLFECRIQAD-PAPTVIWSHSGVQ---------VK-E------------DKRHKFSIDKDGHSYFASLEIIDV  179 (254)
Q Consensus       123 ~~~~g~~~~l~C~~~~~-~~~~~~W~~~~~~---------~~-~------------~~~~~~~~~~~~~~~~~~l~i~~~  179 (254)
                      .+..|+.++|.|..... ....+.|||....         +. .            ..+..+......  ....|+|.++
T Consensus         2 ~v~~G~~vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~--~~~~L~I~~~   79 (107)
T cd07700           2 LVQTNNTVKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDS--SRYRLHINRV   79 (107)
T ss_pred             EEcCCCCEEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCC--CEEEEEECCC
Confidence            46689999999998653 3457999985321         00 0            011111111111  1236999999


Q ss_pred             CCCCceeEEEEEEc
Q psy7036         180 TIEDAGKYKVTAKN  193 (254)
Q Consensus       180 ~~~d~G~y~C~~~~  193 (254)
                      +.+|+|.|.|...+
T Consensus        80 ~~~Dsg~YyCa~~~   93 (107)
T cd07700          80 KPEDSGTYFCMTVG   93 (107)
T ss_pred             CHHHCEEEEEeEcC
Confidence            99999999999853

IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.

>KOG1480|consensus

Probab=98.17  E-value=1.4e-06  Score=70.50  Aligned_cols=177  Identities=20%  Similarity=0.277  Sum_probs=98.8

Q ss_pred             CCCCeeEeCCCceeecCCCeEEEEEEEeeCCCC----ceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCC
Q psy7036           6 DFAPSFTQKPQLRQEDEGNRLIFECQLLCNPKP----DIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDA   81 (254)
Q Consensus         6 ~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~----~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~   81 (254)
                      +..|.|+..|++..+..|.++.|.|.+...++.    .-.|..+............    .+.......+.|......+.
T Consensus        22 g~l~~~~~~p~~~yii~~~p~~l~c~a~~a~~i~~kc~~~wv~~~~~~~~~~~d~t----sg~~~~~~si~Isr~~v~~~   97 (909)
T KOG1480|consen   22 GDLPHFTTEPKSAYIIKNKPLRLQCKANPATQIRFKCNSEWVHQSRHEKLEGTDET----SGLGVREVSIDISRQQVETS   97 (909)
T ss_pred             CCcceeeecCCccceecCCCccceecCCcccccccccChhhhcCccceeeeccCcc----cceeEEeeeeeeehhhhhcc
Confidence            357889999999999999999999998643332    2235443322211100000    00000111344444443333


Q ss_pred             e---EEEE--EEEcCCCceEEEEEEEEeccccCCCCCccccCCCeeeecCCCeEEEEEE-EeeCCCCeEEEEECCEeccc
Q psy7036          82 G---LYKV--KAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECR-IQADPAPTVIWSHSGVQVKE  155 (254)
Q Consensus        82 G---~Y~C--~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~-~~~~~~~~~~W~~~~~~~~~  155 (254)
                      |   .|.|  .+....|....  ++.+..-.+  ....+...+....+..+..+.+.|. ..+.|...+.|++++..+..
T Consensus        98 ~~~~d~~cQc~a~~~~g~~~s--~~a~vr~ay--~rk~f~~~p~~q~V~~~s~~~l~cr~pe~~paae~~w~k~e~~~~p  173 (909)
T KOG1480|consen   98 GGPEDYWCQCVAWSDDGTVKS--RKATVRIAY--LRKHFEQSPVGQEVQEETTLQLPCRPPEGDPKAEVEWLKNEVVIDP  173 (909)
T ss_pred             cCccceeeeeeeecCCCcchh--hhHHHHHHH--HHHhhccChhhheecccccccccccCcccchhhhhhccccCCCCCc
Confidence            2   5665  45555552111  111100000  0111222333445666777888888 45677788999999988766


Q ss_pred             CCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCc
Q psy7036         156 DKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGE  197 (254)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~  197 (254)
                      ..+..  ...+.     .+++...+..|.|+|+|.+.|..+.
T Consensus       174 d~n~~--~~~d~-----~li~~~arlsd~~nytc~a~ni~~~  208 (909)
T KOG1480|consen  174 DANVI--RASDH-----NLIISQARLSDSGNYTCEATNIVAK  208 (909)
T ss_pred             cccch--hhhcC-----Cccccchhhhhcccceeeeehhhcc
Confidence            33222  22222     5889999999999999999997764

>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain

Probab=98.16  E-value=6.5e-05  Score=45.94  Aligned_cols=71  Identities=17%  Similarity=0.212  Sum_probs=45.3

Q ss_pred             CCCeEEEEEEEeeCCCC--eEEEEECCEecccC-CcceEEEcCCC-CceeeEEEEccCCCCCceeEEEEEEcCCCcce
Q psy7036         126 DGKRLLFECRIQADPAP--TVIWSHSGVQVKED-KRHKFSIDKDG-HSYFASLEIIDVTIEDAGKYKVTAKNELGESN  199 (254)
Q Consensus       126 ~g~~~~l~C~~~~~~~~--~~~W~~~~~~~~~~-~~~~~~~~~~~-~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~  199 (254)
                      .|+..+|.|.+.++.++  .+.|+++|..+... .........++ +...+.|.+..   .+...|+|.+.+......
T Consensus        13 ~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgTy~~~s~L~~~~---~~~~~ysC~V~H~~l~~~   87 (94)
T cd05766          13 LSHPHLLVCHVWGFYPPEITVKWFKNGQEETEGVVSTELIPNGDWTYQILVMLETTP---SRGDTYTCVVEHSSLQEP   87 (94)
T ss_pred             CCCCeEEEEEEeeecCCCCEEEEEECCeecCCCceecceEECCCCcEEEEEEEEEcC---CCCCEEEEEEEeCCCCCc
Confidence            47789999999986443  68999999987653 21222233332 23344555543   455589999998765433

IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be

>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain

Probab=98.16  E-value=3.1e-05  Score=49.59  Aligned_cols=75  Identities=17%  Similarity=0.271  Sum_probs=46.8

Q ss_pred             CCeeeecCCCeEEEEEEEeeCC--CCeEEEEECCE--e---c---cc---------CCcceEEEcCCCCceeeEEEEccC
Q psy7036         119 PSIRQEDDGKRLLFECRIQADP--APTVIWSHSGV--Q---V---KE---------DKRHKFSIDKDGHSYFASLEIIDV  179 (254)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~~--~~~~~W~~~~~--~---~---~~---------~~~~~~~~~~~~~~~~~~l~i~~~  179 (254)
                      +....+..|+.++|.|......  ...+.|||...  .   +   ..         ....++....+.......|.|.++
T Consensus         4 ~~~~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~   83 (117)
T cd04981           4 SGPGLVKPGQSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLNSL   83 (117)
T ss_pred             CCCeEEcCCCCEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEECCC
Confidence            3456788899999999875433  45699998421  1   1   00         001122222111112236999999


Q ss_pred             CCCCceeEEEEEEc
Q psy7036         180 TIEDAGKYKVTAKN  193 (254)
Q Consensus       180 ~~~d~G~y~C~~~~  193 (254)
                      ..+|+|.|.|.+..
T Consensus        84 ~~~Dsa~YyCa~~~   97 (117)
T cd04981          84 TPEDTAVYYCARGL   97 (117)
T ss_pred             CHHHCEEEEEEEEc
Confidence            99999999999865

IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.

>PHA03273 envelope glycoprotein C; Provisional

Probab=98.14  E-value=0.00041  Score=53.54  Aligned_cols=122  Identities=18%  Similarity=0.124  Sum_probs=76.7

Q ss_pred             EEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEEeccccCCCCCccccCCCeeeecCCCeEEEEEEEeeCCCC---eEEE
Q psy7036          70 ALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQADPAP---TVIW  146 (254)
Q Consensus        70 ~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~---~~~W  146 (254)
                      .|.|..++..++|.|+=.+.+.++.......++|.-    ..+|.+...+.  .+.+|+...-.|.+..+.++   .+.|
T Consensus       199 ~LtI~sltaaTeGvYtWr~~~~n~t~~~~~~VtV~~----yr~Psvsv~~~--PvL~Ge~y~A~C~aa~YYPp~Sv~~rW  272 (486)
T PHA03273        199 PLTIKSVDWRTAGVYVWSLYAKNGTLVNSTSVTVST----YNAPLVDLSVH--PSLKGENYRAVCVVASYFPHSSVKLRW  272 (486)
T ss_pred             ceEEEecchhhceEEEEEEecCCCceeeeeEEEEEE----ecCCcccccCC--ccccCCCceEEEEeeeecCCCceEEEE
Confidence            599999999999999866656555444444444421    13444443333  35679999999998765443   5999


Q ss_pred             EECCEeccc-CC-cceEEEcCCC-CceeeEEEEccCCC-CCceeEEEEEEcCCCc
Q psy7036         147 SHSGVQVKE-DK-RHKFSIDKDG-HSYFASLEIIDVTI-EDAGKYKVTAKNELGE  197 (254)
Q Consensus       147 ~~~~~~~~~-~~-~~~~~~~~~~-~~~~~~l~i~~~~~-~d~G~y~C~~~~~~~~  197 (254)
                      ++|+..+.. .. ........++ ....|+|.+..... +..-..+|.+......
T Consensus       273 f~dg~~V~~~~~~~~~~~~~~~gl~T~vStlt~~~~~~~~~PP~lrC~v~W~rd~  327 (486)
T PHA03273        273 YKNAKEVDFTKYVTNASSVWVDGLITRISTLSIPVDPDEEYTPSLRCSIEWYRDE  327 (486)
T ss_pred             EeCCeeccccccceeeEEEecCCceEEEEEEeccCcccCCCCCCceEEEEEccCC
Confidence            999998872 21 1222222233 24556777766443 3344899998865443

>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=98.14  E-value=6.2e-05  Score=46.05  Aligned_cols=75  Identities=8%  Similarity=0.201  Sum_probs=46.0

Q ss_pred             CeEEEEEEE-eeCCCCeEEEEECCEecccCCcceEEEcCCC-CceeeEEEEccCCCCCceeEEEEEEcCCCcceEEEEEE
Q psy7036         128 KRLLFECRI-QADPAPTVIWSHSGVQVKEDKRHKFSIDKDG-HSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLN  205 (254)
Q Consensus       128 ~~~~l~C~~-~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~  205 (254)
                      ....+.|.+ .++|.+.|.|+++   +............++ ....+.|.+.....+|...|+|.+.+........+.+.
T Consensus        16 ~~~va~C~s~~gkP~a~ItW~~~---~~~~~~~~~~~~~~g~~tv~S~l~~~p~~~d~G~~~tC~v~h~~l~~~~~~~~~   92 (95)
T cd05719          16 PVTVATCVSANGKPPATISWETT---LGGEAETQSKENPNGTVTVTSEYRLVPSREANGKELTCVVSHPTLQEPQRFSVT   92 (95)
T ss_pred             ccEEEEEECCCCcCCCEEEEEeC---CCCcceeEeecCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCCCeEEEEE
Confidence            456788997 4789999999997   111111111122232 33456777765555555699999999876554444433

Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus

>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin

Probab=98.13  E-value=3.1e-05  Score=47.39  Aligned_cols=69  Identities=6%  Similarity=0.051  Sum_probs=42.5

Q ss_pred             CCCeEEEEEEEeeCCC--CeEEEEECCEecccCC-cceEEEc-CCCCceeeEEEEccCCCCCceeEEEEEEcCC
Q psy7036         126 DGKRLLFECRIQADPA--PTVIWSHSGVQVKEDK-RHKFSID-KDGHSYFASLEIIDVTIEDAGKYKVTAKNEL  195 (254)
Q Consensus       126 ~g~~~~l~C~~~~~~~--~~~~W~~~~~~~~~~~-~~~~~~~-~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~  195 (254)
                      .++.++|.|.+.++.+  ..+.|.++|.. .... ....... ++.+...+.|.+..-.......|+|.+.+..
T Consensus        15 ~~~~~~L~C~a~gFyP~~i~vtW~k~g~~-~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~ytC~V~H~~   87 (95)
T cd04985          15 SSDSVTLGCLATGFLPEPVTFTWNSGSNS-TSGVKTYPAVLQSGGLYTASSQLTVPASEWKGKESFYCKVEHPS   87 (95)
T ss_pred             CCCcEEEEEEEeeEECCCcEEEEeECCEE-CCCcEECCCEeCCCCCEEEEEEEEEeHHHcCCCCcEEEEEEeCC
Confidence            3566899999998654  36899999997 3221 1111222 2233445566666543333558999999865

IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>PHA03270 envelope glycoprotein C; Provisional

Probab=98.10  E-value=0.0005  Score=52.57  Aligned_cols=137  Identities=16%  Similarity=0.185  Sum_probs=71.4

Q ss_pred             CCCCCCeeEeCCCceeecCCCeEEEEEEEee-CC--CCceEEEeCCEEeeeCCcceEEE-eecCCcceEEEEEEeccCCC
Q psy7036           4 AEDFAPSFTQKPQLRQEDEGNRLIFECQLLC-NP--KPDIVWFRGETQLSEDTRTVMKT-TPIGTNKYLVALELDDVIET   79 (254)
Q Consensus         4 ~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~-~~--~~~v~W~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~i~~~~~~   79 (254)
                      .-..+|.+.+.+..  +.+|+...-.|.+.. .|  +..++||+|+..+.......... ...++....+++.+.+....
T Consensus       217 ~~yr~Psvsv~~~P--vL~Ge~Y~AtC~va~YYPp~Sv~lrWf~ng~~V~~~~~i~~~~~~~~dGfs~vStvtsea~~~~  294 (466)
T PHA03270        217 RMFRRPSLSIRPHA--VLEGEPFGATCVAANYYPGDRAAFRWFEGGDEVFAPERVRTRVDAQRDGFSATSTLTSEARAGL  294 (466)
T ss_pred             EEecCCcccccCCc--cccCCCceEEEEeeeecCCCceEEEEEeCCccccCcceeeeeeEecCCCeeEEEEEeccccccC
Confidence            33456666666554  679999999999965 44  45799999999875432222221 22222234445555443322


Q ss_pred             CC-eEEEEEEEcCCCc-eEEEEEEEEeccccCCCCCccccCCC-eeeecCCCeEEEEEEEeeCC-CCeEEEEECCEec
Q psy7036          80 DA-GLYKVKAKNKMGE-VAASINLNFSREQIDGLAPTFLKKPS-IRQEDDGKRLLFECRIQADP-APTVIWSHSGVQV  153 (254)
Q Consensus        80 d~-G~Y~C~~~~~~~~-~~~~~~l~v~~~~~~~~~~~~~~~~~-~~~~~~g~~~~l~C~~~~~~-~~~~~W~~~~~~~  153 (254)
                      .. =..+|.+.-.... ....+.-.+        .|.+...+. .+....|.-   .|.+.--| ...+.|.-++...
T Consensus       295 ~~PPsLrC~v~W~rd~vS~sR~nAa~--------~P~VY~~P~Isv~F~dG~A---VCtA~CVPegV~l~W~V~D~~~  361 (466)
T PHA03270        295 APPRNLTCEFTWHRDSVSFSRRNATG--------APTVLPRPTIEMEFGGDEA---VCTAACVPEGVTLAWLLGADPA  361 (466)
T ss_pred             CCCCCceEEEEEccCCccceeecccc--------cCccccCCeEEEEEeCCEE---EEeccccCCCCEEEEEecCCCC
Confidence            12 2689987632222 222222121        122222222 233333433   36655444 3479998776554

>PHA03270 envelope glycoprotein C; Provisional

Probab=98.09  E-value=0.00065  Score=51.97  Aligned_cols=120  Identities=13%  Similarity=0.111  Sum_probs=77.5

Q ss_pred             EEEEeccCCCCCeEEEEEEEcCCCceE--EEEEEEEeccccCCCCCccccCCCeeeecCCCeEEEEEEEeeCCCC---eE
Q psy7036          70 ALELDDVIETDAGLYKVKAKNKMGEVA--ASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQADPAP---TV  144 (254)
Q Consensus        70 ~l~i~~~~~~d~G~Y~C~~~~~~~~~~--~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~---~~  144 (254)
                      .|.|..++...+|.|+=...+..+...  ..++|...      .+|.+...+.  .+.+|+...-.|.+..+.++   .+
T Consensus       183 ~L~I~slt~aTeGvY~Wr~~~~~~~~~~~~~VtV~~y------r~Psvsv~~~--PvL~Ge~Y~AtC~va~YYPp~Sv~l  254 (466)
T PHA03270        183 RLVIQELTLATQGMYYWARGPADRPHRYGTWTRVRMF------RRPSLSIRPH--AVLEGEPFGATCVAANYYPGDRAAF  254 (466)
T ss_pred             eEEEEEcccccceEEEEEEecCCCceeeeeEEEEEEe------cCCcccccCC--ccccCCCceEEEEeeeecCCCceEE
Confidence            499999999999999998877666433  33444443      3444433333  35679999999998765443   59


Q ss_pred             EEEECCEecccC--CcceEEEcCCCCceeeEEEEccCCCCC-ceeEEEEEEcCCCc
Q psy7036         145 IWSHSGVQVKED--KRHKFSIDKDGHSYFASLEIIDVTIED-AGKYKVTAKNELGE  197 (254)
Q Consensus       145 ~W~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~i~~~~~~d-~G~y~C~~~~~~~~  197 (254)
                      .|++|+..+...  .........++....|++++....... .-..+|.+......
T Consensus       255 rWf~ng~~V~~~~~i~~~~~~~~dGfs~vStvtsea~~~~~~PPsLrC~v~W~rd~  310 (466)
T PHA03270        255 RWFEGGDEVFAPERVRTRVDAQRDGFSATSTLTSEARAGLAPPRNLTCEFTWHRDS  310 (466)
T ss_pred             EEEeCCccccCcceeeeeeEecCCCeeEEEEEeccccccCCCCCCceEEEEEccCC
Confidence            999999887532  222233344555556677766544322 23789998865443

>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin

Probab=98.09  E-value=8.8e-05  Score=45.10  Aligned_cols=69  Identities=17%  Similarity=0.307  Sum_probs=43.7

Q ss_pred             CCCeEEEEEEEeeCCCC--eEEEEECCEecccCCcceEEEcCCCC-ceeeEEEEccCCCCCceeEEEEEEcCCCc
Q psy7036         126 DGKRLLFECRIQADPAP--TVIWSHSGVQVKEDKRHKFSIDKDGH-SYFASLEIIDVTIEDAGKYKVTAKNELGE  197 (254)
Q Consensus       126 ~g~~~~l~C~~~~~~~~--~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~G~y~C~~~~~~~~  197 (254)
                      .|...+|.|.+.++.++  .+.|.+||..+............++. ...+.|.+.   ..+...|+|.+.+....
T Consensus        14 ~g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~~~~~~~~~p~~d~tyq~~s~l~~~---~~~~~~ysC~V~H~~l~   85 (93)
T cd05770          14 NGKPNVLNCYVTGFHPPDIEIRLLKNGVKIPKVEQSDLSFSKDWTFYLLKSTEFT---PTKGDEYACRVRHNSMS   85 (93)
T ss_pred             CCCceEEEEEEEEEeCCCCEEEEEECCEECCCcEECcEEECCCCCEEEEEEEEEC---CCCCCeEEEEEEECCCC
Confidence            36667899999996543  58999999987622222233333432 223445444   45666899999886443

IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.

>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=98.08  E-value=9.1e-05  Score=45.19  Aligned_cols=68  Identities=19%  Similarity=0.261  Sum_probs=43.0

Q ss_pred             CCeEEEEEEEeeCCC--CeEEEEECCEecccCCc-ceEEEcCCCC-ceeeEEEEccCCCCCceeEEEEEEcCCCc
Q psy7036         127 GKRLLFECRIQADPA--PTVIWSHSGVQVKEDKR-HKFSIDKDGH-SYFASLEIIDVTIEDAGKYKVTAKNELGE  197 (254)
Q Consensus       127 g~~~~l~C~~~~~~~--~~~~W~~~~~~~~~~~~-~~~~~~~~~~-~~~~~l~i~~~~~~d~G~y~C~~~~~~~~  197 (254)
                      +...+|.|.+.|+.+  ..+.|.++|..+..... .......++. ...+.|.+..   .+...|+|.+.+....
T Consensus        15 ~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~~~~~~~~~~~~Dgty~~~s~L~v~~---~~~~~ytC~V~H~~l~   86 (94)
T cd05767          15 GEPNTLICFVDNFFPPVLNVTWLKNGVPVTDGVSETRYYPRQDLSFQKFSYLNFTP---EEGDIYSCIVEHWGLE   86 (94)
T ss_pred             CCCeEEEEEEEEEECCcCEEEEEECCeEccCceEEeeeEeCCCCcEEEEEEEEEEC---CCCCeEEEEEEeCCCC
Confidence            455799999999654  36899999998754321 1222333332 3345566553   3455899999886443

IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom

>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain

Probab=98.06  E-value=7.7e-05  Score=45.62  Aligned_cols=68  Identities=15%  Similarity=0.127  Sum_probs=41.1

Q ss_pred             CCCeEEEEEEEeeCCCC--eEEEEECCEecccCCcce-EEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCC
Q psy7036         126 DGKRLLFECRIQADPAP--TVIWSHSGVQVKEDKRHK-FSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNEL  195 (254)
Q Consensus       126 ~g~~~~l~C~~~~~~~~--~~~W~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~  195 (254)
                      .+..++|.|.+.++.+.  .+.|.++|..+....... .....+.+...+.|.+..-.  ....|+|.+.+..
T Consensus        15 ~~~~~tL~C~a~gFyP~~I~v~W~kng~~~~~~~~~~~~~~~~dty~~~S~L~vt~~~--~~~~ysC~V~H~g   85 (96)
T cd07697          15 KQGQGIYLCLLENFFPDVIQVHWREGNSPSILGSQKSEKDKDNDVYSTTSWLTVTKDS--LGKKFRCIYKHEG   85 (96)
T ss_pred             cCCCEEEEEEEEEEeCCCeEEEEEECCEECcCCeEeccEecCCCEEEEEEEEEECchh--CCCeEEEEEEECC
Confidence            35678999999996543  579999999875432211 22222222334556555322  2336999998843

IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.

>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain

Probab=98.04  E-value=3.5e-05  Score=48.20  Aligned_cols=68  Identities=13%  Similarity=0.265  Sum_probs=43.8

Q ss_pred             ecCCCeEEEEEEEeeCCCCeEEEEECCEe-------cc-cCC------------cceEEEcCCCCceeeEEEEccCCCCC
Q psy7036         124 EDDGKRLLFECRIQADPAPTVIWSHSGVQ-------VK-EDK------------RHKFSIDKDGHSYFASLEIIDVTIED  183 (254)
Q Consensus       124 ~~~g~~~~l~C~~~~~~~~~~~W~~~~~~-------~~-~~~------------~~~~~~~~~~~~~~~~l~i~~~~~~d  183 (254)
                      +..|+.++|.|.........+.|++....       +. ...            ..++....+.  ....|.|.+++.+|
T Consensus         3 v~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~~--~~~~L~I~~~~~sD   80 (104)
T cd05720           3 AELGQKVELKCEVLNSSPTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRSS--NSFVLTLKNFQKEN   80 (104)
T ss_pred             ccCCCeEEEEEEecCCCCCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEecC--CEEEEEECCCCHHH
Confidence            56799999999976554456999985421       10 000            1122221222  23479999999999


Q ss_pred             ceeEEEEEEc
Q psy7036         184 AGKYKVTAKN  193 (254)
Q Consensus       184 ~G~y~C~~~~  193 (254)
                      +|.|.|.+.+
T Consensus        81 sgtY~Ca~~~   90 (104)
T cd05720          81 EGYYFCSVAS   90 (104)
T ss_pred             CEEEEEEEcc
Confidence            9999999763

Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.

>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin

Probab=98.04  E-value=1.7e-05  Score=48.52  Aligned_cols=71  Identities=15%  Similarity=0.160  Sum_probs=44.8

Q ss_pred             ecCCCeEEEEEEEeeCC-C--CeEEEEECCEecccCCcceEEEcCCC-CceeeEEEEccCCCCCceeEEEEEEcCCC
Q psy7036         124 EDDGKRLLFECRIQADP-A--PTVIWSHSGVQVKEDKRHKFSIDKDG-HSYFASLEIIDVTIEDAGKYKVTAKNELG  196 (254)
Q Consensus       124 ~~~g~~~~l~C~~~~~~-~--~~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~G~y~C~~~~~~~  196 (254)
                      ...+..++|.|.+.++. +  ..+.|.+++.. ..... ......++ +...+.|.+..-.......|+|.+.+...
T Consensus        16 l~~~~~atLtClV~~f~~P~~i~V~W~~~g~~-~~~~t-~~~~~~dgTys~~S~L~v~~~~W~~g~~ytC~V~H~~l   90 (99)
T cd04986          16 LLLGSSASLTCTLSGLRDPEGAVFTWTPSGGK-EAVQT-SAESDQCGCYSVSSVLPGCAEEWNKGEPFACTVTHPEG   90 (99)
T ss_pred             hCcCCccEEEEEEeccCCCCCeEEEEEECCcc-CcEEc-CcccCCCCCEEEEEEEEeCHHHhcCCCeEEEEEECCCc
Confidence            43577899999999865 2  36999999876 21111 11122233 34556777765444444579999988754

IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins

Probab=98.03  E-value=0.00013  Score=44.54  Aligned_cols=75  Identities=9%  Similarity=0.190  Sum_probs=47.0

Q ss_pred             CeEEEEEEEe-eCCCCeEEEEECCEecccCCcceEEEcCCCC-ceeeEEEEccCCCCCceeEEEEEEcCCCcceEEEEEE
Q psy7036         128 KRLLFECRIQ-ADPAPTVIWSHSGVQVKEDKRHKFSIDKDGH-SYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLN  205 (254)
Q Consensus       128 ~~~~l~C~~~-~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~  205 (254)
                      ..+.+.|.+. +.|.+.|+|+++.   ............++. ...+.|.+.....+|...|+|.+.+........+.+.
T Consensus        16 ~~~va~C~s~~gkPaa~IsW~~~~---~g~~~~~~~~~~~gt~tv~S~l~~~P~~~d~Gk~ltC~v~h~al~~~~~~~~~   92 (95)
T cd07703          16 PVPVAKCVSANGRPPARISWSSTL---GGNANTTSKENGDGTVTVTSEYSLVPTPEANGKEVTCKVEHETLQEPQLLPVT   92 (95)
T ss_pred             ccEEEEEEcCCCCCCcEEEEEcCC---CCCeeEEEEeCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCCCeEEEEE
Confidence            3578899865 6888999999872   111111122222332 3456777765555666699999999876655555444

Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.

>PHA03273 envelope glycoprotein C; Provisional

Probab=98.02  E-value=0.00065  Score=52.46  Aligned_cols=132  Identities=15%  Similarity=0.181  Sum_probs=71.4

Q ss_pred             CCCCeeEeCCCceeecCCCeEEEEEEEee-CC--CCceEEEeCCEEeeeCCc--ceEEEeecCCcceEEEEEEeccCC-C
Q psy7036           6 DFAPSFTQKPQLRQEDEGNRLIFECQLLC-NP--KPDIVWFRGETQLSEDTR--TVMKTTPIGTNKYLVALELDDVIE-T   79 (254)
Q Consensus         6 ~~~p~~~~~~~~~~v~~g~~v~l~C~~~~-~~--~~~v~W~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~i~~~~~-~   79 (254)
                      ..+|.+.+.+..  +.+|+...-.|.+.. .|  ...++|++||..+.....  .......++.....+.|.+.+... .
T Consensus       235 yr~Psvsv~~~P--vL~Ge~y~A~C~aa~YYPp~Sv~~rWf~dg~~V~~~~~~~~~~~~~~~gl~T~vStlt~~~~~~~~  312 (486)
T PHA03273        235 YNAPLVDLSVHP--SLKGENYRAVCVVASYFPHSSVKLRWYKNAKEVDFTKYVTNASSVWVDGLITRISTLSIPVDPDEE  312 (486)
T ss_pred             ecCCcccccCCc--cccCCCceEEEEeeeecCCCceEEEEEeCCeeccccccceeeEEEecCCceEEEEEEeccCcccCC
Confidence            456666666554  679999999999965 34  457999999998872221  112212233334455666665432 3


Q ss_pred             CCeEEEEEEEcCCCc-eEEEEEEEEeccccCCCCCccccCCC-eeeecCCCeEEEEEEEeeCCC--CeEEEEECC
Q psy7036          80 DAGLYKVKAKNKMGE-VAASINLNFSREQIDGLAPTFLKKPS-IRQEDDGKRLLFECRIQADPA--PTVIWSHSG  150 (254)
Q Consensus        80 d~G~Y~C~~~~~~~~-~~~~~~l~v~~~~~~~~~~~~~~~~~-~~~~~~g~~~~l~C~~~~~~~--~~~~W~~~~  150 (254)
                      .--..+|.+.-.... ....+.-.+        .|.+...+. .+....|+-   .|.+.--|.  ..+.|.-++
T Consensus       313 ~PP~lrC~v~W~rd~vS~~RfsAt~--------~P~Vy~~P~Is~~F~~G~A---VCtA~CVP~egV~l~W~v~D  376 (486)
T PHA03273        313 YTPSLRCSIEWYRDEVSFARIAKAG--------TPSVFVAPTVSVTVEDGDA---VCTAKCVPSTGVFVSWSVND  376 (486)
T ss_pred             CCCCceEEEEEccCCcceeeccccc--------cCccccCCeEEEEEeCCEE---EEecccccCCCeeEEEEccC
Confidence            334789987633222 222111111        122222222 233333432   477665554  579998766

>PHA03269 envelope glycoprotein C; Provisional

Probab=98.00  E-value=0.001  Score=51.68  Aligned_cols=120  Identities=13%  Similarity=0.109  Sum_probs=73.9

Q ss_pred             EEEEEeccCCCCCeEEEEEEEcCC-Cc--eEEEEEEEEeccccCCCCCccccCCCeeeecCCCeEEEEEEEeeCCCC---
Q psy7036          69 VALELDDVIETDAGLYKVKAKNKM-GE--VAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQADPAP---  142 (254)
Q Consensus        69 ~~l~i~~~~~~d~G~Y~C~~~~~~-~~--~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~---  142 (254)
                      ..|.|.+++..++|.|+=.+.+.. +.  ....++|.+.      .+|.+...+.  .+.+|+...-.|.+..+.++   
T Consensus       289 ~pL~I~sltaATeGvY~Wrv~~~~n~t~~~~~~VtV~~y------r~PsVsV~p~--PVL~Ge~YkAtC~vA~YYPp~Sv  360 (566)
T PHA03269        289 FSLHILSLDASTEGTYIWRVIHTANKNVINEHHITVMSY------KRPNITVIGD--PVLLGNPYAAYCKVNKYYPPHSV  360 (566)
T ss_pred             cceEEeecccccCceEEEEEecCCCCceeeeeEEEEEEe------cCCCccccCC--ccccCCCceEEEEeeeecCCCce
Confidence            369999999999999986655332 22  3345555554      3444333333  35679999999998775443   


Q ss_pred             eEEEEECCEecccCCc-ceEEEcCCC-CceeeEEEEccCCCCC--ceeEEEEEEcCCC
Q psy7036         143 TVIWSHSGVQVKEDKR-HKFSIDKDG-HSYFASLEIIDVTIED--AGKYKVTAKNELG  196 (254)
Q Consensus       143 ~~~W~~~~~~~~~~~~-~~~~~~~~~-~~~~~~l~i~~~~~~d--~G~y~C~~~~~~~  196 (254)
                      .+.|++|+..+..... .......+| ....|+|.+......|  .-..+|.+....+
T Consensus       361 rlrWf~ng~~V~~~~it~t~~~~~dGlFSrVSTLtlp~~~~~d~~PPsLrCeV~W~RD  418 (566)
T PHA03269        361 IVKWTSNFGNIGKNFITDAIKENADGLFSSVSALHIPAQKNADYPPPAIQCNVLWIRD  418 (566)
T ss_pred             EEEEEeCCcccCccccccceeecCCCceEEEEEEeccCccccCCCCCCceEEEEEccC
Confidence            5999999888763211 112223333 4455667664332222  3468999887544

>PHA03269 envelope glycoprotein C; Provisional

Probab=97.98  E-value=0.00062  Score=52.87  Aligned_cols=136  Identities=15%  Similarity=0.130  Sum_probs=71.9

Q ss_pred             CCCCCCeeEeCCCceeecCCCeEEEEEEEee-CC--CCceEEEeCCEEeeeCCcce-EEEeecCCcceEEEEEEeccCCC
Q psy7036           4 AEDFAPSFTQKPQLRQEDEGNRLIFECQLLC-NP--KPDIVWFRGETQLSEDTRTV-MKTTPIGTNKYLVALELDDVIET   79 (254)
Q Consensus         4 ~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~-~~--~~~v~W~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~i~~~~~~   79 (254)
                      ....+|.+.+.+..  +.+|+...-.|.+.. .|  +..++||+|+..+....... .....++.-...++|.+......
T Consensus       325 ~~yr~PsVsV~p~P--VL~Ge~YkAtC~vA~YYPp~SvrlrWf~ng~~V~~~~it~t~~~~~dGlFSrVSTLtlp~~~~~  402 (566)
T PHA03269        325 MSYKRPNITVIGDP--VLLGNPYAAYCKVNKYYPPHSVIVKWTSNFGNIGKNFITDAIKENADGLFSSVSALHIPAQKNA  402 (566)
T ss_pred             EEecCCCccccCCc--cccCCCceEEEEeeeecCCCceEEEEEeCCcccCccccccceeecCCCceEEEEEEeccCcccc
Confidence            34456766665544  679999999999965 34  45799999988876422111 12223333344555655433222


Q ss_pred             C--CeEEEEEEEcC-CCceEEEEEEEEeccccCCCCCccccCCC-eeeecCCCeEEEEEEEeeCCC--CeEEEEECCEe
Q psy7036          80 D--AGLYKVKAKNK-MGEVAASINLNFSREQIDGLAPTFLKKPS-IRQEDDGKRLLFECRIQADPA--PTVIWSHSGVQ  152 (254)
Q Consensus        80 d--~G~Y~C~~~~~-~~~~~~~~~l~v~~~~~~~~~~~~~~~~~-~~~~~~g~~~~l~C~~~~~~~--~~~~W~~~~~~  152 (254)
                      |  --..+|.+.-. .+.....+.-.+        .|.+...+. .+....|.-   .|.+.--|.  ..+.|.-++..
T Consensus       403 d~~PPsLrCeV~W~RDsVS~tRfnAaa--------tP~VY~~PtISm~FedG~A---VCtA~CVP~~~V~l~WlVgD~p  470 (566)
T PHA03269        403 DYPPPAIQCNVLWIRDGVSHMKYSAAV--------TPDVYPFPNVSIEIIDGHI---VCLAKCVPRGVVHFNWWINDIP  470 (566)
T ss_pred             CCCCCCceEEEEEccCCchheeccccc--------CCccccCCeEEEEEeCCEE---EEecccccCCCceEEEEecCCC
Confidence            2  34579987632 222222111111        111122222 333434443   377665554  47899877655

>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins

Probab=97.97  E-value=0.00013  Score=44.50  Aligned_cols=73  Identities=15%  Similarity=0.124  Sum_probs=48.4

Q ss_pred             eeecCCCeEEE-EEEE-eeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcCCC
Q psy7036          18 RQEDEGNRLIF-ECQL-LCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMG   93 (254)
Q Consensus        18 ~~v~~g~~v~l-~C~~-~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~   93 (254)
                      ..+.+|+.+.+ .|.+ .|.|.+.|+|+.+.....   ........++.....+.+.+...+..|.-.++|.+.+..-
T Consensus        11 ~~~~~g~~~~vA~C~sa~gkPaa~IsW~~~~~G~~---~~~~~~~~ngT~TV~S~~~l~p~r~d~G~~vtC~V~H~al   85 (97)
T cd07704          11 LLIDGGNGTTLAACCAAEGRPAADVTWETNVYGTS---ESHSQEHPNGTTTVTSEYIWVPSRHANGHPLTCVVSHPAL   85 (97)
T ss_pred             eEeecCcceeEEEEEccCCccCCEeEEeCCCCCcc---ceeeecCCCCCEEEEEEEEEEeCHHHCCcEEEEEEeCccc
Confidence            45678999998 9998 458999999998643221   1112222334444555777766666667799999987653

Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect

>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4)

Probab=97.92  E-value=0.00014  Score=45.54  Aligned_cols=73  Identities=12%  Similarity=0.122  Sum_probs=47.0

Q ss_pred             eCCCceeecCCCeEEEEEEEeeCC--C-CceEEEeCCE-Ee------e--------eCCcceEEEeecCCcceEEEEEEe
Q psy7036          13 QKPQLRQEDEGNRLIFECQLLCNP--K-PDIVWFRGET-QL------S--------EDTRTVMKTTPIGTNKYLVALELD   74 (254)
Q Consensus        13 ~~~~~~~v~~g~~v~l~C~~~~~~--~-~~v~W~~~~~-~~------~--------~~~~~~~~~~~~~~~~~~~~l~i~   74 (254)
                      +++....+..|+.++|+|.+.|..  . ..+.|+|... .+      .        ...++.....   ...-...|.+.
T Consensus         3 ~~~~~~lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg~lE~c~~~~~~g~~~~~~~~r~tcs~~---~s~ntv~L~l~   79 (115)
T cd05721           3 VQQSPVLASSNGAASLVCEYTYNGFSKEFRASLLKGADSAVEVCAVTGNMSNQLQTSLDGFNCDGT---LGNEQVNFTLQ   79 (115)
T ss_pred             eecCCeEEcCCCCEEEEEEecCCccccEEEEEEEEeCCCCcEEEEEEeCCCccccccCCCeEEeEe---CCCCEEEEEEc
Confidence            345566889999999999997643  3 5688998421 11      0        1111111111   12233489999


Q ss_pred             ccCCCCCeEEEEEE
Q psy7036          75 DVIETDAGLYKVKA   88 (254)
Q Consensus        75 ~~~~~d~G~Y~C~~   88 (254)
                      +++.+|.+.|.|..
T Consensus        80 ~L~a~DTa~Y~Ca~   93 (115)
T cd05721          80 NLRANQTDIYFCKI   93 (115)
T ss_pred             CCCHHHCeEEEEEe
Confidence            99999999999964

IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased

>PHA03271 envelope glycoprotein C; Provisional

Probab=97.87  E-value=0.0026  Score=48.60  Aligned_cols=133  Identities=15%  Similarity=0.141  Sum_probs=70.2

Q ss_pred             CCeeEeCCCceeecCCCeEEEEEEEee-CC--CCceEEEeCCEEeeeCCcceEE---EeecCCcceEEEEEEeccCCCCC
Q psy7036           8 APSFTQKPQLRQEDEGNRLIFECQLLC-NP--KPDIVWFRGETQLSEDTRTVMK---TTPIGTNKYLVALELDDVIETDA   81 (254)
Q Consensus         8 ~p~~~~~~~~~~v~~g~~v~l~C~~~~-~~--~~~v~W~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~i~~~~~~d~   81 (254)
                      +|.+.+.+..  +.+|+...-.|.+.. .|  +..++|++||............   ....++....++|.+.+.....-
T Consensus       247 PPsVsV~a~P--VL~Ge~YkAtC~vAnYYPP~SvrlrWf~nG~~V~~~~~rdt~~~w~d~~~g~S~VSTltl~a~~~~~P  324 (490)
T PHA03271        247 PASVDVLAPP--VLSGENYKASCIVRHFYPPGSVYVSWRQNGNIATPRKDRDGSFWWFESGRGATLVSTITLGNSGIDPP  324 (490)
T ss_pred             CCCccccCCc--cccCCCceEEEEeeeecCCCceEEEEEeCCccccCccccceeEEEecCCCceeEEEEEEcccccCCCC
Confidence            4555555543  679999999999966 34  3579999999877543322221   12233334445565554433333


Q ss_pred             eEEEEEEEcCCCceEEEEEEEEeccccCCCCCccccCCC-eeeecCCCeEEEEEEEeeCC-CCeEEEEECCEec
Q psy7036          82 GLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPS-IRQEDDGKRLLFECRIQADP-APTVIWSHSGVQV  153 (254)
Q Consensus        82 G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~-~~~~~~g~~~~l~C~~~~~~-~~~~~W~~~~~~~  153 (254)
                      =..+|.+.-.........  .-.      ..|.+...+. .+....|+.   .|.+.--| ...+.|.-++...
T Consensus       325 PsLRCeV~W~rd~v~s~r--nAa------atP~VY~~P~ISv~FedG~A---VCtA~CVP~gV~lrWlVgD~p~  387 (490)
T PHA03271        325 PKISCLVAWKQGDMISTT--NAT------AIPTVYHHPRISLAFKDGYA---ICTIECVPSGITVRWLVHDEPQ  387 (490)
T ss_pred             CCceEEEEEccCCceeee--ecc------cCCccccCCeEEEEEeCCEE---EEeccccCCCcEEEEEecCCCC
Confidence            478998864333222222  111      1222222222 334444443   36654443 3479998766543

>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins

Probab=97.87  E-value=0.00028  Score=43.03  Aligned_cols=75  Identities=11%  Similarity=0.136  Sum_probs=48.5

Q ss_pred             eeeecCCCeEEE-EEEEe-eCCCCeEEEEECCEecccCCcceEEEcCCC-CceeeEEEEccCCCCCceeEEEEEEcCCCc
Q psy7036         121 IRQEDDGKRLLF-ECRIQ-ADPAPTVIWSHSGVQVKEDKRHKFSIDKDG-HSYFASLEIIDVTIEDAGKYKVTAKNELGE  197 (254)
Q Consensus       121 ~~~~~~g~~~~l-~C~~~-~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~  197 (254)
                      ...+.+|+.+.+ .|.+. +.|.+.|+|+.+.....  . .......++ ....+.+.+...+..|...++|.+.++...
T Consensus        10 ~~~~~~g~~~~vA~C~sa~gkPaa~IsW~~~~~G~~--~-~~~~~~~ngT~TV~S~~~l~p~r~d~G~~vtC~V~H~al~   86 (97)
T cd07704          10 SLLIDGGNGTTLAACCAAEGRPAADVTWETNVYGTS--E-SHSQEHPNGTTTVTSEYIWVPSRHANGHPLTCVVSHPALQ   86 (97)
T ss_pred             eeEeecCcceeEEEEEccCCccCCEeEEeCCCCCcc--c-eeeecCCCCCEEEEEEEEEEeCHHHCCcEEEEEEeCcccC
Confidence            445667888888 88854 67889999997643321  1 111222233 345567777666666667999999988654


Q ss_pred             c
Q psy7036         198 S  198 (254)
Q Consensus       198 ~  198 (254)
                      .
T Consensus        87 ~   87 (97)
T cd07704          87 Q   87 (97)
T ss_pred             C
Confidence            3

Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect

>PHA02633 hypothetical protein; Provisional

Probab=97.87  E-value=7.1e-05  Score=40.56  Aligned_cols=36  Identities=17%  Similarity=0.238  Sum_probs=32.3

Q ss_pred             EEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEEec
Q psy7036          70 ALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSR  105 (254)
Q Consensus        70 ~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~  105 (254)
                      .|+|.++..+|+|.|.|.+.|..-....++.|.|..
T Consensus        19 nLwilpa~~sDSGiYiC~~rn~t~c~~~si~l~V~~   54 (63)
T PHA02633         19 NMLILNPTQSDSGIYMCITKNETYSDMMKFDLCICL   54 (63)
T ss_pred             cEEEeccccccCcEEEEEEcCCCeeEEEEEEEEEee
Confidence            699999999999999999998887788888888864

>smart00406 IGv Immunoglobulin V-Type

Probab=97.85  E-value=0.00012  Score=43.36  Aligned_cols=62  Identities=21%  Similarity=0.348  Sum_probs=36.6

Q ss_pred             EEEEEEEeeCCCC--eEEEEECCE--e---cc-c----------CCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEE
Q psy7036         130 LLFECRIQADPAP--TVIWSHSGV--Q---VK-E----------DKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTA  191 (254)
Q Consensus       130 ~~l~C~~~~~~~~--~~~W~~~~~--~---~~-~----------~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~  191 (254)
                      +.|.|.......+  .+.|++...  .   +. .          ....++............|.|.+++.+|+|.|.|.+
T Consensus         2 v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~v   81 (81)
T smart00406        2 VTLSCKASGFTFSSYYVSWVRQPPGKGLEWLGYIGSSGSTYYQQSYKGRVTISKDTSKNDVSLTISNLRVEDTGTYYCAV   81 (81)
T ss_pred             EEEEEEEeccccceeEEEEEEeCCCCCeEEEEEEcCCCcEEECcccCCcEEEEecCcCCEEEEEEcCCCHHHCEEEEEcC
Confidence            6788987654443  688987431  0   10 0          111122222221122357999999999999999963

>PHA02914 Immunoglobulin-like domain protein; Provisional

Probab=97.80  E-value=0.0084  Score=45.70  Aligned_cols=85  Identities=20%  Similarity=0.292  Sum_probs=51.4

Q ss_pred             eecCCCeEEEEEEEee--CC-CCeEEEEECCEecc-----------------cCCcceEEEcCC--CCceeeEEEEccCC
Q psy7036         123 QEDDGKRLLFECRIQA--DP-APTVIWSHSGVQVK-----------------EDKRHKFSIDKD--GHSYFASLEIIDVT  180 (254)
Q Consensus       123 ~~~~g~~~~l~C~~~~--~~-~~~~~W~~~~~~~~-----------------~~~~~~~~~~~~--~~~~~~~l~i~~~~  180 (254)
                      .+..|..+.+.|..+-  +. -....|+--+-++.                 ....+-+....+  .....++|+|..+.
T Consensus       275 ~~~~g~~v~~~c~~s~~~~e~i~~~~w~~t~~~~~~~~g~~~~~~~v~~~~~~~~~~~i~~~~~~s~dlk~STLTIkka~  354 (500)
T PHA02914        275 MLEVGKRVDIECFFSMCGNENISNAKWIDTGFEIGPLIGTVKSKDIVEGDFAEDDDFMISAHANYSDDLKNSTLTIKKAH  354 (500)
T ss_pred             EeccCcEEEEEEEEeecCCcccccceEEecCCcccceeEEEEecceeecccccCCceEEEEecccccchhhceEEeeeEE
Confidence            4556999999999653  33 33578986443221                 111111111111  11335799999999


Q ss_pred             CCCceeEEEEEEcCCCcceEEEEEEEe
Q psy7036         181 IEDAGKYKVTAKNELGESNATISLNFD  207 (254)
Q Consensus       181 ~~d~G~y~C~~~~~~~~~~~~~~~~v~  207 (254)
                      .+..|-|.|.|............+.|.
T Consensus       355 I~N~GCY~~~a~~g~~~~ec~~Cl~V~  381 (500)
T PHA02914        355 INNAGCYEAQAFMGKFKEECRHCFKVA  381 (500)
T ss_pred             EEcCCceEEEEecCcchhhhhhheEec
Confidence            999999999998765444444444443

>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains

Probab=97.78  E-value=9.3e-05  Score=41.22  Aligned_cols=49  Identities=22%  Similarity=0.487  Sum_probs=35.9

Q ss_pred             CCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEc
Q psy7036          23 GNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKN   90 (254)
Q Consensus        23 g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~   90 (254)
                      .+.|.|+|.+    ..+|+|++ |..+......              +|.+.....+-.|.|.|.+.+
T Consensus         6 ~~~V~L~C~~----~tsi~W~k-G~~~~~~~~~--------------tlnLGs~~~DPRG~Y~C~~s~   54 (69)
T cd07691           6 EGKVFLKCNG----ATNITWKK-GKEILEVSNT--------------LLDLGSRINDPRGTYSCKESE   54 (69)
T ss_pred             CceEEEEecC----CCcEEEec-Cccccccccc--------------EEeccCcccCCCcceEecCcc
Confidence            4579999965    25699999 5544322111              688888889999999998865

Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain

Probab=97.77  E-value=6.9e-05  Score=41.45  Aligned_cols=50  Identities=18%  Similarity=0.411  Sum_probs=34.3

Q ss_pred             CCCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEc
Q psy7036         126 DGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKN  193 (254)
Q Consensus       126 ~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~  193 (254)
                      .|..|+|+|.....   .+.|.+++..+.....              .+.+.+-. ++.|.|.|.+.+
T Consensus         6 sGTtVtlTCP~~~~---~i~W~~n~~~~~g~~~--------------~~~~~~~~-e~~G~Y~C~~~~   55 (65)
T cd07692           6 SGTTVTVTCPLSGD---DIKWKKNDQVSQGSDE--------------KYLSLNHF-SSSGYYHCTADN   55 (65)
T ss_pred             eccEEEEECCCCCC---CceEEeCCccCCCCCc--------------eEEeeccC-CCCceEEEEeCC
Confidence            58899999985422   3999999865544222              23344444 789999999853

Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>PHA02982 hypothetical protein; Provisional

Probab=97.69  E-value=0.0074  Score=41.73  Aligned_cols=163  Identities=11%  Similarity=0.189  Sum_probs=87.1

Q ss_pred             CceeecCCCeEEEEEEEee-CCCCceEEEeCCE-EeeeCC----------------cceEEEeecCCcceEEEEEEeccC
Q psy7036          16 QLRQEDEGNRLIFECQLLC-NPKPDIVWFRGET-QLSEDT----------------RTVMKTTPIGTNKYLVALELDDVI   77 (254)
Q Consensus        16 ~~~~v~~g~~v~l~C~~~~-~~~~~v~W~~~~~-~~~~~~----------------~~~~~~~~~~~~~~~~~l~i~~~~   77 (254)
                      .++...++++|.|.|.... +.-....|++++. .+....                +......-.   ...++|+|.++.
T Consensus        32 ~dv~a~vd~~V~L~C~~~~~~~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~---g~~STLTIkk~~  108 (251)
T PHA02982         32 ADVNATVDQEVKLQCLFKDADEISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVS---GNSSTFTMKKPD  108 (251)
T ss_pred             hhhhccCCCcEEEEecCCCcchhhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEe---ccceeEEeccCC
Confidence            3456678999999999632 2334688998653 222110                111111111   224489999999


Q ss_pred             CCCCeEEEEEEEcCCCceE-EEEEEEEeccccCCCCCccccCCCeeeecC-CCeEEEEEEEeeCCCCeEEEEECCEeccc
Q psy7036          78 ETDAGLYKVKAKNKMGEVA-ASINLNFSREQIDGLAPTFLKKPSIRQEDD-GKRLLFECRIQADPAPTVIWSHSGVQVKE  155 (254)
Q Consensus        78 ~~d~G~Y~C~~~~~~~~~~-~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~-g~~~~l~C~~~~~~~~~~~W~~~~~~~~~  155 (254)
                      .+..|.|+|++....+..+ ...-+.|...            .....+.+ .....+.|-+-....+...|.-+|.....
T Consensus       109 i~N~GCYtc~~ks~~~k~E~c~kCl~V~~~------------~V~~~W~e~nNeT~V~CyVgS~~~dvp~W~V~GVvttG  176 (251)
T PHA02982        109 PQNLGCFTCEAKDAEGKEETCEKCLEIQKE------------DILYVVEEHNNETIITCFVGSKHGDVPRFIVAGIVTTG  176 (251)
T ss_pred             cccCCceEEEEecCCCchheeheeeeEecc------------eEEEEEEecCCeEEEEEEEEeccCCCccEEEeeEEecC
Confidence            9999999999997665433 2455555210            00111222 23456788876554444489877653221


Q ss_pred             CC-----cceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcC
Q psy7036         156 DK-----RHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNE  194 (254)
Q Consensus       156 ~~-----~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~  194 (254)
                      ..     ...+.....+..+ .++.+.+--..+--.-.|+....
T Consensus       177 g~~sg~i~~gfn~~segy~y-~~Ikin~s~~~~V~kp~CRy~~~  219 (251)
T PHA02982        177 GPMSGEIPKGFNQDSEGYRY-NSIKINESVTDHIEKPYCRYWID  219 (251)
T ss_pred             CccccccccccccccCceEE-EEEEEcccccccccccEEEEEcC
Confidence            11     1111122223222 24555544344455667877643

>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ]

Probab=97.64  E-value=0.00011  Score=47.12  Aligned_cols=84  Identities=12%  Similarity=0.094  Sum_probs=47.5

Q ss_pred             eecCCCeEEEEEEEeeC-----CCCceEEEeCCEEeeeCCc--ceEEE------eecCCcceEEEEEEeccCCCCCeEEE
Q psy7036          19 QEDEGNRLIFECQLLCN-----PKPDIVWFRGETQLSEDTR--TVMKT------TPIGTNKYLVALELDDVIETDAGLYK   85 (254)
Q Consensus        19 ~v~~g~~v~l~C~~~~~-----~~~~v~W~~~~~~~~~~~~--~~~~~------~~~~~~~~~~~l~i~~~~~~d~G~Y~   85 (254)
                      ...-+++|.|+|.+..-     +...|.|..+|..+-.-..  .....      .......++++|.+.....- .|.|+
T Consensus        23 ~t~CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~~a~-~GnYT  101 (130)
T PF08204_consen   23 YTVCNDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDKSDAV-EGNYT  101 (130)
T ss_dssp             E-TT-SEEEE--BBSS---SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEHHHHH--EEEE
T ss_pred             EEecCCCEEEEeEeccccccccceEEEEEEECCeEEEEEcCccceecccCccccchhHhhCCCEEEEEcchhcc-ccceE
Confidence            34569999999999641     2346899999887632111  11100      00222245567888875544 89999


Q ss_pred             EEEEcCCCceEEEEEEEE
Q psy7036          86 VKAKNKMGEVAASINLNF  103 (254)
Q Consensus        86 C~~~~~~~~~~~~~~l~v  103 (254)
                      |.+.......+..+.|+.
T Consensus       102 CeVt~~~~ege~~i~Lk~  119 (130)
T PF08204_consen  102 CEVTELSREGETTIELKY  119 (130)
T ss_dssp             EEEEETTEEEEEEEEEEE
T ss_pred             EEEEecCCCceEEEEEEE
Confidence            999877766666666665

; PDB: 2VSC_B 2JJS_D 2JJT_C.

>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=97.48  E-value=0.0011  Score=40.34  Aligned_cols=69  Identities=19%  Similarity=0.309  Sum_probs=39.9

Q ss_pred             ecCCCeEEEEEEEee-CC--CCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCe-EEEEEEEc
Q psy7036          20 EDEGNRLIFECQLLC-NP--KPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAG-LYKVKAKN   90 (254)
Q Consensus        20 v~~g~~v~l~C~~~~-~~--~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G-~Y~C~~~~   90 (254)
                      +.+|..+++.|.+.+ .|  ...+.|++++..+.... +.-.............+.+.-. ++|.| .|+|.+.-
T Consensus        12 l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l~~~~-f~~~~~~ks~~~~~~~vtftpt-reD~g~~fsC~A~L   84 (99)
T cd07689          12 LEEGKPVTVKCEVPDVYPFDRLEIELLKGETLLPSKS-FLEDMDKKSLETKSLEVTFTPT-IEDIGKVLVCRAKL   84 (99)
T ss_pred             ccCCceEEEEEEecCcccCCceEEEEecCcceecccc-cccccccCCCCCcceeEEEecc-hhhCCcEEEEEEEE
Confidence            479999999999965 44  36799999776654432 1110000000111124455443 56665 99998863

Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.

>KOG0613|consensus

Probab=97.37  E-value=0.0012  Score=57.44  Aligned_cols=174  Identities=11%  Similarity=0.004  Sum_probs=94.1

Q ss_pred             EEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEEecccc----------CCCCCccc---cCCCeeeecCCCeEEEEEEE
Q psy7036          70 ALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQI----------DGLAPTFL---KKPSIRQEDDGKRLLFECRI  136 (254)
Q Consensus        70 ~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~----------~~~~~~~~---~~~~~~~~~~g~~~~l~C~~  136 (254)
                      ...+.+....+.+.|+|...+..+.........+.....          ...++.+.   .....+....+..+++.|..
T Consensus       279 t~~i~~~~~~~~~s~t~~~~~~~~q~~~~v~~~~~i~~~~~~p~~~~~aaa~~~~~~v~~~~~~~v~a~d~~~v~m~~~~  358 (1205)
T KOG0613|consen  279 TKTIQNDGPEPELSWTVADKRQGCQDRFKVTEEAPIGKGKPGPESLQAAAARPPEVPVGLVRNLSVTARDNTLVEMPTAL  358 (1205)
T ss_pred             cccccccCCccccceeeecccCCcccceeeeEEeeccccccCchhhhhhccCCccccccccccceeccccCcceeecccc
Confidence            455666667777888888877666544333322221000          01122111   11223445667788999999


Q ss_pred             eeCCCCe-EEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcceEEEEEEEecCCCCCCC
Q psy7036         137 QADPAPT-VIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPG  215 (254)
Q Consensus       137 ~~~~~~~-~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~v~~~~~~~~~  215 (254)
                      .+...+. +.|++++..........+.......  .-.+.|..+...+.+.|.|.|.|..|.....-...+...     .
T Consensus       359 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~t--s~~~~~~~~~~~e~~~~~~~a~n~~g~~~~~~~~~vs~~-----~  431 (1205)
T KOG0613|consen  359 SGTQKPDEAQGYHGEEVSSESLGALPCPVGTVT--SHTYTIKDAGPGEGYFTRVPAVNKGGTEQTIAESTVSEE-----M  431 (1205)
T ss_pred             cCCcCCchheeeccccccccccccccccccccc--CcchhhhhcCcccccccccceeccCCcccccchhhcccc-----c
Confidence            8887776 9999987665544332222222211  115778888889999999999998886533322222211     0


Q ss_pred             CCCCCeeecCCccccccCC-CCcEEEEEEEeccCCC
Q psy7036         216 EGTKPVFTERPVTKQSDDD-LNDIVIECRLVGEPEP  250 (254)
Q Consensus       216 ~~~~p~~~~~~~~~~~~~g-~~~~~l~C~~~~~p~p  250 (254)
                      ....|.............+ -+.+.+.|...++|.|
T Consensus       432 ~gt~~~~~kk~~~~t~~L~~~~~i~~~~~~~s~~~~  467 (1205)
T KOG0613|consen  432 PGTQPPKFKKDVSTTDLLTVKDEITVRTPDSSTSMP  467 (1205)
T ss_pred             CCCCCccccccccccccccCCcccccccCCCCcccc
Confidence            1122222222222222222 1267777777777655

>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4)

Probab=97.36  E-value=0.0025  Score=39.97  Aligned_cols=72  Identities=7%  Similarity=-0.006  Sum_probs=45.3

Q ss_pred             CeeeecCCCeEEEEEEEeeCCC---CeEEEEECCEec-------------ccCCcceEEEcCCCCceeeEEEEccCCCCC
Q psy7036         120 SIRQEDDGKRLLFECRIQADPA---PTVIWSHSGVQV-------------KEDKRHKFSIDKDGHSYFASLEIIDVTIED  183 (254)
Q Consensus       120 ~~~~~~~g~~~~l~C~~~~~~~---~~~~W~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d  183 (254)
                      ....+..|..++|.|.+.++..   -.+.|+|.....             ......++....+.......|.|.+++.+|
T Consensus         6 ~~~lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~L~a~D   85 (115)
T cd05721           6 SPVLASSNGAASLVCEYTYNGFSKEFRASLLKGADSAVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQNLRANQ   85 (115)
T ss_pred             CCeEEcCCCCEEEEEEecCCccccEEEEEEEEeCCCCcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcCCCHHH
Confidence            3455667888999999877543   357888742210             001112222222222334589999999999


Q ss_pred             ceeEEEEE
Q psy7036         184 AGKYKVTA  191 (254)
Q Consensus       184 ~G~y~C~~  191 (254)
                      .+.|.|..
T Consensus        86 Ta~Y~Ca~   93 (115)
T cd05721          86 TDIYFCKI   93 (115)
T ss_pred             CeEEEEEe
Confidence            99999986

IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased

>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells

Probab=97.32  E-value=0.0027  Score=38.83  Aligned_cols=35  Identities=26%  Similarity=0.444  Sum_probs=27.1

Q ss_pred             EEEEeccCCCCCeEEEEEEEcCCCce-EEEEEEEEe
Q psy7036          70 ALELDDVIETDAGLYKVKAKNKMGEV-AASINLNFS  104 (254)
Q Consensus        70 ~l~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~l~v~  104 (254)
                      .|.|+.++..|+|.|.-++.+..|.. ...+++.|.
T Consensus        72 aLlIkaAq~qDSG~Y~LEvT~~sG~V~~~~FqVsVF  107 (108)
T PF11465_consen   72 ALLIKAAQPQDSGLYCLEVTNESGKVCTKNFQVSVF  107 (108)
T ss_dssp             EEEESS-SGGG-EEEEEEEEETTSCEEEEEEEEEEE
T ss_pred             eEEEeecCcccCceEEEEEEcCCCcEEEEEEEEEee
Confidence            79999999999999999999988874 445666553

It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.

>PHA02914 Immunoglobulin-like domain protein; Provisional

Probab=97.32  E-value=0.034  Score=42.56  Aligned_cols=167  Identities=15%  Similarity=0.215  Sum_probs=95.1

Q ss_pred             CceeecCCCeEEEEEEEee--C-CCCceEEEeCCEEee-----------------eCCcceEEEee-cCCcceEEEEEEe
Q psy7036          16 QLRQEDEGNRLIFECQLLC--N-PKPDIVWFRGETQLS-----------------EDTRTVMKTTP-IGTNKYLVALELD   74 (254)
Q Consensus        16 ~~~~v~~g~~v~l~C~~~~--~-~~~~v~W~~~~~~~~-----------------~~~~~~~~~~~-~~~~~~~~~l~i~   74 (254)
                      ..+.+.+|..|.|.|...-  . .-....|+..|-++.                 .+..+.+.... -..+...++|+|.
T Consensus       272 ~~~~~~~g~~v~~~c~~s~~~~e~i~~~~w~~t~~~~~~~~g~~~~~~~v~~~~~~~~~~~i~~~~~~s~dlk~STLTIk  351 (500)
T PHA02914        272 DEVMLEVGKRVDIECFFSMCGNENISNAKWIDTGFEIGPLIGTVKSKDIVEGDFAEDDDFMISAHANYSDDLKNSTLTIK  351 (500)
T ss_pred             ceeEeccCcEEEEEEEEeecCCcccccceEEecCCcccceeEEEEecceeecccccCCceEEEEecccccchhhceEEee
Confidence            4456677999999999853  3 334688987653321                 11222222211 1123446699999


Q ss_pred             ccCCCCCeEEEEEEEcCCCceEEEEEEEEeccccCCCCCccccCCCeeeec-CC-CeEEEEEEEeeC--CCCeEEEEECC
Q psy7036          75 DVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQED-DG-KRLLFECRIQAD--PAPTVIWSHSG  150 (254)
Q Consensus        75 ~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~-~g-~~~~l~C~~~~~--~~~~~~W~~~~  150 (254)
                      ++....+|.|.|++..+.-......-|.|...             ....+. ++ ......|-+-..  .++++.|.-+|
T Consensus       352 ka~I~N~GCY~~~a~~g~~~~ec~~Cl~V~d~-------------V~f~W~~e~~n~T~V~Cyv~sy~~kp~si~wkvnG  418 (500)
T PHA02914        352 KAHINNAGCYEAQAFMGKFKEECRHCFKVADH-------------VFFKWNTEGDNETKVACYAAQYDMQPFSILWKSNG  418 (500)
T ss_pred             eEEEEcCCceEEEEecCcchhhhhhheEeccE-------------EEEEEEeccCceEEEEEEEEecccCCceeEEEEcc
Confidence            99999999999999876544444444555310             011111 22 334567886543  34569999888


Q ss_pred             EecccCCcceEEEc----CCCCceeeEEEEccCCCCC-ceeEEEEEEcCCC
Q psy7036         151 VQVKEDKRHKFSID----KDGHSYFASLEIIDVTIED-AGKYKVTAKNELG  196 (254)
Q Consensus       151 ~~~~~~~~~~~~~~----~~~~~~~~~l~i~~~~~~d-~G~y~C~~~~~~~  196 (254)
                      ..........+...    .++ .+.+.+.|.+-...| --.-.|+.....+
T Consensus       419 V~~~G~~~~~l~~~~~~~~~G-c~~seI~I~~s~d~dtV~k~~Cr~~tg~~  468 (500)
T PHA02914        419 VSFGGEIADALDEHEGAICDG-CEASEIIIMDKRDKDTVKKLSCINITGQG  468 (500)
T ss_pred             EEecCeecCcccccccccccc-cceEEEEEecccCccccccceEEEecCCC
Confidence            66543222111100    111 223567787776666 4467888766544

>PHA02633 hypothetical protein; Provisional

Probab=97.24  E-value=0.00099  Score=36.23  Aligned_cols=36  Identities=25%  Similarity=0.263  Sum_probs=31.0

Q ss_pred             EEEEccCCCCCceeEEEEEEcCCCcceEEEEEEEec
Q psy7036         173 SLEIIDVTIEDAGKYKVTAKNELGESNATISLNFDS  208 (254)
Q Consensus       173 ~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~v~~  208 (254)
                      .|-|-+...+|+|.|.|..+|..-....++.+.|..
T Consensus        19 nLwilpa~~sDSGiYiC~~rn~t~c~~~si~l~V~~   54 (63)
T PHA02633         19 NMLILNPTQSDSGIYMCITKNETYSDMMKFDLCICL   54 (63)
T ss_pred             cEEEeccccccCcEEEEEEcCCCeeEEEEEEEEEee
Confidence            588889999999999999999877778888887764

>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains

Probab=97.10  E-value=0.0044  Score=34.70  Aligned_cols=49  Identities=16%  Similarity=0.410  Sum_probs=34.5

Q ss_pred             CCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEc
Q psy7036         127 GKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKN  193 (254)
Q Consensus       127 g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~  193 (254)
                      ...|.|.|..    ...|.|++ |..+....        +.     +|.+.....+-.|.|.|.+.+
T Consensus         6 ~~~V~L~C~~----~tsi~W~k-G~~~~~~~--------~~-----tlnLGs~~~DPRG~Y~C~~s~   54 (69)
T cd07691           6 EGKVFLKCNG----ATNITWKK-GKEILEVS--------NT-----LLDLGSRINDPRGTYSCKESE   54 (69)
T ss_pred             CceEEEEecC----CCcEEEec-Cccccccc--------cc-----EEeccCcccCCCcceEecCcc
Confidence            4568999965    24699999 54443221        11     677888888889999999866

Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=97.05  E-value=0.0085  Score=36.50  Aligned_cols=71  Identities=18%  Similarity=0.246  Sum_probs=40.6

Q ss_pred             ecCCCeEEEEEEEee-CCC--CeEEEEECCEecccCCcceEEEcCCC-CceeeEEEEccCCCCCce-eEEEEEEcCCC
Q psy7036         124 EDDGKRLLFECRIQA-DPA--PTVIWSHSGVQVKEDKRHKFSIDKDG-HSYFASLEIIDVTIEDAG-KYKVTAKNELG  196 (254)
Q Consensus       124 ~~~g~~~~l~C~~~~-~~~--~~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~G-~y~C~~~~~~~  196 (254)
                      +..|..+++.|.+.+ .|.  ..+.|+++...+.... +.-....+. ....+.+++.. ..+|.| .|+|+|.-...
T Consensus        12 l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l~~~~-f~~~~~~ks~~~~~~~vtftp-treD~g~~fsC~A~L~l~   87 (99)
T cd07689          12 LEEGKPVTVKCEVPDVYPFDRLEIELLKGETLLPSKS-FLEDMDKKSLETKSLEVTFTP-TIEDIGKVLVCRAKLHID   87 (99)
T ss_pred             ccCCceEEEEEEecCcccCCceEEEEecCcceecccc-cccccccCCCCCcceeEEEec-chhhCCcEEEEEEEEeec
Confidence            357999999999875 443  4689998766554322 111000000 00112455554 366666 99999975433

Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.

>PHA03042 CD47-like protein; Provisional

Probab=96.96  E-value=0.0085  Score=43.26  Aligned_cols=70  Identities=19%  Similarity=0.296  Sum_probs=45.9

Q ss_pred             cCCCeEEEEEEEeeC-----CCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcCCCce
Q psy7036          21 DEGNRLIFECQLLCN-----PKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGEV   95 (254)
Q Consensus        21 ~~g~~v~l~C~~~~~-----~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~   95 (254)
                      .-++++.+.|.+..-     ....+.|..++..+-.......           ++|.+... ..-.|+|+|++.+.....
T Consensus        29 ~CN~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~If~~n~tn~-----------aSL~~~f~-~~l~GNYTCEv~~l~n~g   96 (286)
T PHA03042         29 TCNKTIVIVCNLNLLIYYNISNIHINWKFNNKVIFKKNNTNT-----------SSLKFNFS-KNLSGNYTCEAINKFNKI   96 (286)
T ss_pred             ecCceEEEEeecCChhhcCccceEEEEEeCCeeEEEecCCcc-----------eEEEEecc-ccCCCceeEEEeecccCc
Confidence            468899999999642     3556999999987754333211           25666543 444899999998766544


Q ss_pred             EEEEEEE
Q psy7036          96 AASINLN  102 (254)
Q Consensus        96 ~~~~~l~  102 (254)
                      .....|+
T Consensus        97 k~~IeLk  103 (286)
T PHA03042         97 KNTIELQ  103 (286)
T ss_pred             cEEEEEE
Confidence            4444443

>PF02124 Marek_A: Marek's disease glycoprotein A; InterPro: IPR001038 Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) glycoprotein 13 (EHV-1 gp13) has the characteristic features of a membrane-spanning protein: an N-terminal signal sequence; a hydrophobic membrane anchor region; a charged C-terminal cytoplasmic tail; and an exterior domain with nine potential N-glycosylation sites []

Probab=96.69  E-value=0.12  Score=36.36  Aligned_cols=106  Identities=15%  Similarity=0.190  Sum_probs=51.5

Q ss_pred             CCceEEEeCCEEeeeCCcc-eEEEeecCCcceEEEEEEecc-CCCCCeEEEEEEEcCCCc-eEEEEEEEEeccccCCCCC
Q psy7036          37 KPDIVWFRGETQLSEDTRT-VMKTTPIGTNKYLVALELDDV-IETDAGLYKVKAKNKMGE-VAASINLNFSREQIDGLAP  113 (254)
Q Consensus        37 ~~~v~W~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~i~~~-~~~d~G~Y~C~~~~~~~~-~~~~~~l~v~~~~~~~~~~  113 (254)
                      ...++|+.||..+....-. ......++.....++|.+... .....-..+|.+.-.... ....+...+        .|
T Consensus         6 S~~~~Wf~dg~~v~~~~~~~~~~~~~~G~~s~vStl~~~~~~~~~~pp~i~C~v~W~r~~v~~~r~~a~~--------~P   77 (211)
T PF02124_consen    6 SVRFRWFEDGNPVEPRFIRDSSQVWSDGLFSRVSTLTLPGNSADSPPPSIRCQVTWYRDSVSETRFNATA--------TP   77 (211)
T ss_pred             cEEEEEEECCEeCCccceeeEEEEecCCcEEEEEEEEecCCCCCCCCCcceEEEEEccCCCeeeEeeccc--------cc
Confidence            3468999999987633221 112222233344556666322 233345789987633322 222222221        22


Q ss_pred             ccccCCC-eeeecCCCeEEEEEEEeeCCC--CeEEEEECCEec
Q psy7036         114 TFLKKPS-IRQEDDGKRLLFECRIQADPA--PTVIWSHSGVQV  153 (254)
Q Consensus       114 ~~~~~~~-~~~~~~g~~~~l~C~~~~~~~--~~~~W~~~~~~~  153 (254)
                      .....+. .+....|.   ..|.+.--|.  ..+.|.-++...
T Consensus        78 ~Vy~~P~vsv~F~~g~---AVC~A~CVP~~~v~l~W~v~d~~~  117 (211)
T PF02124_consen   78 SVYPKPRVSVRFEDGY---AVCTARCVPRGNVTLRWSVGDDPS  117 (211)
T ss_pred             ceecCCEEEEEecCCE---EEEEcceeeCCCeEEEEEECCccC
Confidence            2222222 23333333   3466654442  579999877654

EHV-1 gp13 is the structural homologue of the gC-like glycoproteins of the Human herpesvirus 1 (HHV-1) and Human herpesvirus 2 (HHV-2) (gC-1 and gC-2 respectively), Pseudorabies virus (strain Indiana-Funkhauser/Becker) (PRV) (gIII) and Human herpesvirus 3 (HHV-3) (gp66). Secretory glycoprotein GP57-65 precursor (glycoprotein A - GA) is similar to Herpesvirus glycoprotein C, and belongs to the immunoglobulin gene superfamily [, ]. GA is thought to play an immunoevasive role in the pathogenesis of Marek's disease. It is a candidate for causing the early-stage immunosuppression that occurs after MDHV infection.

>KOG1480|consensus

Probab=96.54  E-value=0.00099  Score=54.77  Aligned_cols=76  Identities=22%  Similarity=0.431  Sum_probs=57.7

Q ss_pred             eEeCCCceeecCCCeEEEEEEE-eeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEE
Q psy7036          11 FTQKPQLRQEDEGNRLIFECQL-LCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAK   89 (254)
Q Consensus        11 ~~~~~~~~~v~~g~~v~l~C~~-~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~   89 (254)
                      |.+.|.-..|..+..+.+.|.. .+.|...++|++++..+..........  ..      .+.+..++..|.|+|+|++.
T Consensus       132 f~~~p~~q~V~~~s~~~l~cr~pe~~paae~~w~k~e~~~~pd~n~~~~~--d~------~li~~~arlsd~~nytc~a~  203 (909)
T KOG1480|consen  132 FEQSPVGQEVQEETTLQLPCRPPEGDPKAEVEWLKNEVVIDPDANVIRAS--DH------NLIISQARLSDSGNYTCEAT  203 (909)
T ss_pred             hccChhhheecccccccccccCcccchhhhhhccccCCCCCccccchhhh--cC------Cccccchhhhhcccceeeee
Confidence            4455666678888899999987 567888999999998776643332211  11      58999999999999999999


Q ss_pred             cCCCc
Q psy7036          90 NKMGE   94 (254)
Q Consensus        90 ~~~~~   94 (254)
                      |-.+.
T Consensus       204 ni~~~  208 (909)
T KOG1480|consen  204 NIVAK  208 (909)
T ss_pred             hhhcc
Confidence            87764

>KOG4597|consensus

Probab=96.50  E-value=0.0041  Score=48.35  Aligned_cols=92  Identities=10%  Similarity=0.040  Sum_probs=65.0

Q ss_pred             eEeCCCceeecCCCeEEEEEEEeeCCCCceEEEe---CCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEE
Q psy7036          11 FTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFR---GETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVK   87 (254)
Q Consensus        11 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~   87 (254)
                      +..-|....+.+|++..++|-+.|.+.+.|.|.+   |...+..... .+..  +-.-.....|.|-+....|+|-|+|.
T Consensus       199 l~~cpa~w~vg~wetcS~tCg~~G~q~r~V~c~qv~anr~~vv~~~n-q~~e--~p~vtstcql~ic~ewq~~a~w~tCs  275 (560)
T KOG4597|consen  199 LVDCPAEWFVGDWETCSSTCGVQGRQYRVVTCEQVFANRENVVMRPN-QTVE--NPVVTSTCQLVICNEWQADAGWYTCS  275 (560)
T ss_pred             cccCcchhhcccchhhcccccccCCcCceeeeehhhccccceeecCc-cccC--CcceeeeeeEEEcchhhcCCCceeec
Confidence            3344555678899999999999999999999975   3332221111 1110  11112344899999999999999999


Q ss_pred             EEcCCCceEEEEEEEEec
Q psy7036          88 AKNKMGEVAASINLNFSR  105 (254)
Q Consensus        88 ~~~~~~~~~~~~~l~v~~  105 (254)
                      +.+..|.....+.+.+..
T Consensus       276 ~rcg~g~~~rdv~c~s~~  293 (560)
T KOG4597|consen  276 ARCGAGFLRRDVPCSSVK  293 (560)
T ss_pred             cccccceeeccceeeeec
Confidence            999999988888777653

>PHA02982 hypothetical protein; Provisional

Probab=96.43  E-value=0.047  Score=37.97  Aligned_cols=81  Identities=11%  Similarity=0.281  Sum_probs=49.1

Q ss_pred             eeecCCCeEEEEEEEee-CCCCeEEEEECCE-ecccC------------------CcceEEEcCCCCceeeEEEEccCCC
Q psy7036         122 RQEDDGKRLLFECRIQA-DPAPTVIWSHSGV-QVKED------------------KRHKFSIDKDGHSYFASLEIIDVTI  181 (254)
Q Consensus       122 ~~~~~g~~~~l~C~~~~-~~~~~~~W~~~~~-~~~~~------------------~~~~~~~~~~~~~~~~~l~i~~~~~  181 (254)
                      +....++.+.|+|.... ..-.+..|..+.. .+...                  .....+.+.    ..|+|+|.++..
T Consensus        34 v~a~vd~~V~L~C~~~~~~~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~g----~~STLTIkk~~i  109 (251)
T PHA02982         34 VNATVDQEVKLQCLFKDADEISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVSG----NSSTFTMKKPDP  109 (251)
T ss_pred             hhccCCCcEEEEecCCCcchhhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEec----cceeEEeccCCc
Confidence            44556899999998432 2234578886432 22100                  001111111    136899999999


Q ss_pred             CCceeEEEEEEcCCCcc-eEEEEEEE
Q psy7036         182 EDAGKYKVTAKNELGES-NATISLNF  206 (254)
Q Consensus       182 ~d~G~y~C~~~~~~~~~-~~~~~~~v  206 (254)
                      +..|-|+|.+....+.. .....+.|
T Consensus       110 ~N~GCYtc~~ks~~~k~E~c~kCl~V  135 (251)
T PHA02982        110 QNLGCFTCEAKDAEGKEETCEKCLEI  135 (251)
T ss_pred             ccCCceEEEEecCCCchheeheeeeE
Confidence            99999999999866544 33445555

>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ]

Probab=96.37  E-value=0.0048  Score=39.70  Aligned_cols=84  Identities=17%  Similarity=0.165  Sum_probs=45.3

Q ss_pred             eecCCCeEEEEEEEeeC-----CCCeEEEEECCEecccCCc--ceEEEc-------CCCCceeeEEEEccCCCCCceeEE
Q psy7036         123 QEDDGKRLLFECRIQAD-----PAPTVIWSHSGVQVKEDKR--HKFSID-------KDGHSYFASLEIIDVTIEDAGKYK  188 (254)
Q Consensus       123 ~~~~g~~~~l~C~~~~~-----~~~~~~W~~~~~~~~~~~~--~~~~~~-------~~~~~~~~~l~i~~~~~~d~G~y~  188 (254)
                      .....+.+.|.|.+...     +...+.|..++..+.....  ......       .+-....++|.+.....- .|.|+
T Consensus        23 ~t~CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~~a~-~GnYT  101 (130)
T PF08204_consen   23 YTVCNDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDKSDAV-EGNYT  101 (130)
T ss_dssp             E-TT-SEEEE--BBSS---SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEHHHHH--EEEE
T ss_pred             EEecCCCEEEEeEeccccccccceEEEEEEECCeEEEEEcCccceecccCccccchhHhhCCCEEEEEcchhcc-ccceE
Confidence            45568899999998642     2235899998877542211  111000       111112346777764433 89999


Q ss_pred             EEEEcCCCcceEEEEEEEe
Q psy7036         189 VTAKNELGESNATISLNFD  207 (254)
Q Consensus       189 C~~~~~~~~~~~~~~~~v~  207 (254)
                      |.+.......+..+.|...
T Consensus       102 CeVt~~~~ege~~i~Lk~~  120 (130)
T PF08204_consen  102 CEVTELSREGETTIELKYR  120 (130)
T ss_dssp             EEEEETTEEEEEEEEEEE-
T ss_pred             EEEEecCCCceEEEEEEEE
Confidence            9998877767777776654

; PDB: 2VSC_B 2JJS_D 2JJT_C.

>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=96.11  E-value=0.11  Score=30.55  Aligned_cols=51  Identities=18%  Similarity=0.190  Sum_probs=31.8

Q ss_pred             CCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEE-cCCCceEEEEEEE
Q psy7036          37 KPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAK-NKMGEVAASINLN  102 (254)
Q Consensus        37 ~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~-~~~~~~~~~~~l~  102 (254)
                      .+.+.|+..+........               .+........|+|.+.|.|. +..-.......|.
T Consensus        26 ~~~~~l~~~~~k~~~~~~---------------~~~~~~~~~~d~G~w~C~a~~~~~k~~~s~~~i~   77 (80)
T PF05790_consen   26 KPSLFLENPGKKSLETKK---------------LVSTFTPTTEDSGTWVCTASDNEPKERESKIEIL   77 (80)
T ss_dssp             CEEEEEECSSCEEEEESS---------------EEEEESBTCGGSEEEEEEEEECTTEEEEEEEEEE
T ss_pred             ChhheeeccCccccccce---------------EEEEecCCCCCCEEEEEEEcCCceEEEEEEEEEE
Confidence            456778776655543332               45666778899999999994 4433333344443

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....

>PHA02865 MHC-like TNF binding protein; Provisional

Probab=96.00  E-value=0.092  Score=39.84  Aligned_cols=21  Identities=14%  Similarity=0.483  Sum_probs=17.3

Q ss_pred             eEEEEEEEeeC-C-CCceEEEeC
Q psy7036          25 RLIFECQLLCN-P-KPDIVWFRG   45 (254)
Q Consensus        25 ~v~l~C~~~~~-~-~~~v~W~~~   45 (254)
                      .++|+|.+.|. | ...++|.|+
T Consensus       216 ~~tL~C~A~GFYP~~I~v~W~kd  238 (338)
T PHA02865        216 NTTLFCTFDSHYPSSVAAKWYNS  238 (338)
T ss_pred             CceEEEEEEeEeCCccEEEEEec
Confidence            58999999983 4 457899999

>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []

Probab=95.74  E-value=0.14  Score=30.84  Aligned_cols=70  Identities=21%  Similarity=0.301  Sum_probs=43.7

Q ss_pred             eCCCceeecCCCeEEEEEEEeeC-----CCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEE
Q psy7036          13 QKPQLRQEDEGNRLIFECQLLCN-----PKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVK   87 (254)
Q Consensus        13 ~~~~~~~v~~g~~v~l~C~~~~~-----~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~   87 (254)
                      ..|+...+..|++|+..|.+...     ....+.|..++..+..++...+       +...+.+++.+......-.|-|.
T Consensus         8 i~p~~pvv~lGS~vtasC~l~~~c~~~~~a~~I~Wkln~~~iP~~qy~~i-------n~~~SsVT~~~~~~~~~~L~cC~   80 (89)
T PF06328_consen    8 ISPPSPVVSLGSNVTASCVLKQNCSHSVNASQIVWKLNGEKIPGSQYRVI-------NDTVSSVTLPNLNPTGATLFCCK   80 (89)
T ss_dssp             EECSSSEEETTS-EEEEEEE-CCCHCT-STTCEEEECSSCESTCGCEEEE-------STTEEEEEESS--SSEEEEEEEE
T ss_pred             EecCCCEEeCCCCEEEEEEEECCCCCCcccceEEEEECCEECChhHccee-------CCeEEEEEEccCCCCCceEEEEE
Confidence            34556678999999999999532     3557999999886665443222       11124677777766666677776


Q ss_pred             EE
Q psy7036          88 AK   89 (254)
Q Consensus        88 ~~   89 (254)
                      ..
T Consensus        81 l~   82 (89)
T PF06328_consen   81 LA   82 (89)
T ss_dssp             EC
T ss_pred             Ec
Confidence            43

The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.

>TIGR00864 PCC polycystin cation channel protein

Probab=95.65  E-value=2.5  Score=41.61  Aligned_cols=190  Identities=15%  Similarity=0.129  Sum_probs=104.7

Q ss_pred             CceeecCCCeEEEEEEEeeCCCCceEEEeCCEEee-eCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEE--EEcCC
Q psy7036          16 QLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLS-EDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVK--AKNKM   92 (254)
Q Consensus        16 ~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~--~~~~~   92 (254)
                      ....+..|+.|.|.-....-....++|..++..-. ......                  -.+-...|.|...  +.|..
T Consensus      1705 S~~~aavn~~V~fs~~lt~GS~vty~W~~gdG~s~~~s~p~~------------------tHtf~~~G~y~VtVta~N~v 1766 (2740)
T TIGR00864      1705 SDNPAAVNALINLSAELAEGSGLQYRWFLEEGDDLETSEPFM------------------SHSFPSAGLHLVTMKAFNEL 1766 (2740)
T ss_pred             cCCcccCCCeEEEEEEecCCCCcEEEEEECCCCCcccCCCce------------------EEEccCCceEEEEEEEEccc
Confidence            34456789999998877666777899987653211 111100                  1113446777664  45777


Q ss_pred             CceEEEEEEEEeccccCCCCCccccCCC--eeeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCCCCce
Q psy7036          93 GEVAASINLNFSREQIDGLAPTFLKKPS--IRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSY  170 (254)
Q Consensus        93 ~~~~~~~~l~v~~~~~~~~~~~~~~~~~--~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~  170 (254)
                      +....+..+.|.+..   ....+.....  ...+..|..+.+.-.+.........|..++..-.....            
T Consensus      1767 ss~~~s~~V~VqepV---~GL~i~~~~~~~~~~~~ag~~v~F~a~vstGsnVsw~W~f~~g~s~~gk~------------ 1831 (2740)
T TIGR00864      1767 GSANASEEVDVQEPI---SGLKIRAADAGEQNFFAADSSVCFQGELATGTNVSWCWAIDGGSSKMGKH------------ 1831 (2740)
T ss_pred             cccceeEEEEEEecc---ccceEecCCCCcccceecCcEEEEEEEccCCCeeEEEEEeCCCCccccce------------
Confidence            777777777776422   1112211111  11344567777766654333446778776432111100            


Q ss_pred             eeEEEEccCCCCCceeEEE--EEEcCCCcceEEEEEEEecCCCCCCCCCCCCeeecCCccccccCCCCcEEEEEEEeccC
Q psy7036         171 FASLEIIDVTIEDAGKYKV--TAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLVGEP  248 (254)
Q Consensus       171 ~~~l~i~~~~~~d~G~y~C--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~l~C~~~~~p  248 (254)
                       ..     ....+.|.|+-  .|.|..+....+..+.|+...         -.+........+..|+ .+++.+.....+
T Consensus      1832 -v~-----~Tf~~aG~ytV~L~AsN~vs~~~~s~~~~VQe~I---------~~L~L~as~~~~~~n~-~v~fsa~l~~GS 1895 (2740)
T TIGR00864      1832 -AC-----MTFPDAGTFAIRLNASNAVSGKSASREFFAEEPI---------FGLELKASKKIAAIGE-KVEFQILLAAGS 1895 (2740)
T ss_pred             -eE-----EecCCCeEEEEEEEEEcccCcceeeeeEEEEEec---------ceEEEecccccccCCC-EEEEEEEecCCC
Confidence             01     23457888865  566888888788888877411         1122233333455677 888888776555


Q ss_pred             CCceeC
Q psy7036         249 EPTISW  254 (254)
Q Consensus       249 ~p~~~W  254 (254)
                      .-.+.|
T Consensus      1896 ~Vtf~w 1901 (2740)
T TIGR00864      1896 AVNFRL 1901 (2740)
T ss_pred             ceEEEE
Confidence            444444

Note: this model has been restricted to the amino half because for technical reasons.

>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells

Probab=95.63  E-value=0.24  Score=30.58  Aligned_cols=34  Identities=24%  Similarity=0.364  Sum_probs=26.7

Q ss_pred             EEEEccCCCCCceeEEEEEEcCCCcc-eEEEEEEE
Q psy7036         173 SLEIIDVTIEDAGKYKVTAKNELGES-NATISLNF  206 (254)
Q Consensus       173 ~l~i~~~~~~d~G~y~C~~~~~~~~~-~~~~~~~v  206 (254)
                      .|.|+.++..|+|.|..++.+..|.. ...+.+.|
T Consensus        72 aLlIkaAq~qDSG~Y~LEvT~~sG~V~~~~FqVsV  106 (108)
T PF11465_consen   72 ALLIKAAQPQDSGLYCLEVTNESGKVCTKNFQVSV  106 (108)
T ss_dssp             EEEESS-SGGG-EEEEEEEEETTSCEEEEEEEEEE
T ss_pred             eEEEeecCcccCceEEEEEEcCCCcEEEEEEEEEe
Confidence            79999999999999999999988876 45555555

It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.

>KOG4597|consensus

Probab=95.57  E-value=0.029  Score=43.91  Aligned_cols=84  Identities=15%  Similarity=0.093  Sum_probs=58.2

Q ss_pred             eecCCCeEEEEEEEeeCCCCeEEEEEC---CEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcce
Q psy7036         123 QEDDGKRLLFECRIQADPAPTVIWSHS---GVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESN  199 (254)
Q Consensus       123 ~~~~g~~~~l~C~~~~~~~~~~~W~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~  199 (254)
                      .+.++++..++|-+.|.+.+.+.|.+.   +..+.-....  ...+--......|.|-+....|+|.|+|.+.+..|...
T Consensus       207 ~vg~wetcS~tCg~~G~q~r~V~c~qv~anr~~vv~~~nq--~~e~p~vtstcql~ic~ewq~~a~w~tCs~rcg~g~~~  284 (560)
T KOG4597|consen  207 FVGDWETCSSTCGVQGRQYRVVTCEQVFANRENVVMRPNQ--TVENPVVTSTCQLVICNEWQADAGWYTCSARCGAGFLR  284 (560)
T ss_pred             hcccchhhcccccccCCcCceeeeehhhccccceeecCcc--ccCCcceeeeeeEEEcchhhcCCCceeeccccccceee
Confidence            456788999999999999999999762   2221111110  01111112345799999999999999999999999887


Q ss_pred             EEEEEEEec
Q psy7036         200 ATISLNFDS  208 (254)
Q Consensus       200 ~~~~~~v~~  208 (254)
                      +.+.+.+..
T Consensus       285 rdv~c~s~~  293 (560)
T KOG4597|consen  285 RDVPCSSVK  293 (560)
T ss_pred             ccceeeeec
Confidence            777666543

>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals

Probab=95.01  E-value=0.052  Score=39.27  Aligned_cols=49  Identities=22%  Similarity=0.354  Sum_probs=34.5

Q ss_pred             CCCceEEEeCCE-EeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcCC
Q psy7036          36 PKPDIVWFRGET-QLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKM   92 (254)
Q Consensus        36 ~~~~v~W~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~   92 (254)
                      ..|.+.|...+. .+....  .+.....+      .|.+.+...+++|.|+|.+....
T Consensus        11 iDP~y~W~GP~g~~l~gn~--~~nIT~TG------~L~~~~F~esmSG~YTCtLsYk~   60 (271)
T PF07354_consen   11 IDPTYLWTGPNGKPLSGNS--YVNITETG------KLMFKNFQESMSGSYTCTLSYKP   60 (271)
T ss_pred             CCCceEEECCCCcccCCCC--eEEEccCc------eEEeeccccccCCceEEEEEEEe
Confidence            468899997654 444332  33333333      79999999999999999887543

These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region

>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals

Probab=94.98  E-value=0.058  Score=39.04  Aligned_cols=48  Identities=21%  Similarity=0.398  Sum_probs=35.0

Q ss_pred             CCeEEEEEC-CEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCC
Q psy7036         141 APTVIWSHS-GVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNEL  195 (254)
Q Consensus       141 ~~~~~W~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~  195 (254)
                      .|.+.|... +..+...  ..+.+.+.|     .|.+.+...+++|.|+|......
T Consensus        12 DP~y~W~GP~g~~l~gn--~~~nIT~TG-----~L~~~~F~esmSG~YTCtLsYk~   60 (271)
T PF07354_consen   12 DPTYLWTGPNGKPLSGN--SYVNITETG-----KLMFKNFQESMSGSYTCTLSYKP   60 (271)
T ss_pred             CCceEEECCCCcccCCC--CeEEEccCc-----eEEeeccccccCCceEEEEEEEe
Confidence            578999864 3444433  234445555     79999999999999999998754

These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region

>PHA02865 MHC-like TNF binding protein; Provisional

Probab=94.94  E-value=0.27  Score=37.41  Aligned_cols=67  Identities=12%  Similarity=0.220  Sum_probs=37.3

Q ss_pred             eEEEEEEEeeCCCC--eEEEEEC---------C---EecccCCc---------ceEEEcCCCCceeeEEEEccCCCCCce
Q psy7036         129 RLLFECRIQADPAP--TVIWSHS---------G---VQVKEDKR---------HKFSIDKDGHSYFASLEIIDVTIEDAG  185 (254)
Q Consensus       129 ~~~l~C~~~~~~~~--~~~W~~~---------~---~~~~~~~~---------~~~~~~~~~~~~~~~l~i~~~~~~d~G  185 (254)
                      .++|.|.+.|+.+.  .++|.|+         +   ..+..+..         .....+.++..+.....+ .+..++..
T Consensus       216 ~~tL~C~A~GFYP~~I~v~W~kd~~~~~~~~~g~e~~e~~~n~d~e~ge~~~~~~~~pn~DggTfQ~~~~v-~v~~~~~~  294 (338)
T PHA02865        216 NTTLFCTFDSHYPSSVAAKWYNSEDFAPEYRYGRYYPELGRDTDYEPGEPGFPTNTKKDNDKNTFSSTPSV-RVPTDMSN  294 (338)
T ss_pred             CceEEEEEEeEeCCccEEEEEecccccccccCCccccccccCCCccccccccccceeeCCCCCeeEEEEEE-EeCCCCCC
Confidence            57999999997654  5789999         3   11111110         012233343233323333 34455666


Q ss_pred             eEEEEEEcCCC
Q psy7036         186 KYKVTAKNELG  196 (254)
Q Consensus       186 ~y~C~~~~~~~  196 (254)
                      .|+|.+.+...
T Consensus       295 ~Y~C~V~Hsgl  305 (338)
T PHA02865        295 QIVCVVFHSTL  305 (338)
T ss_pred             CcEEEEEeCCC
Confidence            79999988543

>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=94.85  E-value=0.42  Score=28.14  Aligned_cols=32  Identities=31%  Similarity=0.422  Sum_probs=21.0

Q ss_pred             EEEEccCCCCCceeEEEEEE-cCCCcceEEEEE
Q psy7036         173 SLEIIDVTIEDAGKYKVTAK-NELGESNATISL  204 (254)
Q Consensus       173 ~l~i~~~~~~d~G~y~C~~~-~~~~~~~~~~~~  204 (254)
                      ......+..+|+|.+.|.|. +..........|
T Consensus        44 ~~~~~~~~~~d~G~w~C~a~~~~~k~~~s~~~i   76 (80)
T PF05790_consen   44 LVSTFTPTTEDSGTWVCTASDNEPKERESKIEI   76 (80)
T ss_dssp             EEEEESBTCGGSEEEEEEEEECTTEEEEEEEEE
T ss_pred             EEEEecCCCCCCEEEEEEEcCCceEEEEEEEEE
Confidence            46667778899999999995 433333333333

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....

>PHA03042 CD47-like protein; Provisional

Probab=94.83  E-value=0.26  Score=35.97  Aligned_cols=71  Identities=17%  Similarity=0.265  Sum_probs=45.2

Q ss_pred             ecCCCeEEEEEEEeeC-----CCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcc
Q psy7036         124 EDDGKRLLFECRIQAD-----PAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGES  198 (254)
Q Consensus       124 ~~~g~~~~l~C~~~~~-----~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~  198 (254)
                      ....+++.+.|.+..-     ....+.|..++..+......          ..++|.+.. ...-.|+|+|.|.+.....
T Consensus        28 T~CN~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~If~~n~t----------n~aSL~~~f-~~~l~GNYTCEv~~l~n~g   96 (286)
T PHA03042         28 TTCNKTIVIVCNLNLLIYYNISNIHINWKFNNKVIFKKNNT----------NTSSLKFNF-SKNLSGNYTCEAINKFNKI   96 (286)
T ss_pred             EecCceEEEEeecCChhhcCccceEEEEEeCCeeEEEecCC----------cceEEEEec-cccCCCceeEEEeecccCc
Confidence            3457889999997542     24459999998776433221          013566553 3345899999999866555


Q ss_pred             eEEEEEE
Q psy7036         199 NATISLN  205 (254)
Q Consensus       199 ~~~~~~~  205 (254)
                      +....++
T Consensus        97 k~~IeLk  103 (286)
T PHA03042         97 KNTIELQ  103 (286)
T ss_pred             cEEEEEE
Confidence            5444443

>PHA03052 Hypothetical protein; Provisional

Probab=94.68  E-value=0.12  Score=28.72  Aligned_cols=38  Identities=18%  Similarity=0.392  Sum_probs=29.1

Q ss_pred             CCCceeecCCCeEEEEEEEe-e--CCCCceEEEeCCEEeee
Q psy7036          14 KPQLRQEDEGNRLIFECQLL-C--NPKPDIVWFRGETQLSE   51 (254)
Q Consensus        14 ~~~~~~v~~g~~v~l~C~~~-~--~~~~~v~W~~~~~~~~~   51 (254)
                      .|+...+..|.+++|.|.+. |  ...+.|.|.-|+..+..
T Consensus         3 ~P~~i~~slGs~ltI~Ckv~lg~g~~~a~V~W~~N~~~~e~   43 (69)
T PHA03052          3 LPEGIVTSLGSNLTITCKVSLRPPTTDADVFWISNGMYYEE   43 (69)
T ss_pred             CCccEEEEccCCceEeEEEEecCCCcceEEEEEeCCcEEec
Confidence            34667788999999999993 2  33567999999888743

>cd05890 Ig2_Nectin-1_like Second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins

Probab=94.66  E-value=0.37  Score=29.12  Aligned_cols=74  Identities=14%  Similarity=0.275  Sum_probs=43.3

Q ss_pred             eEEEEEE-EeeCCCCeEEEEECCEecccCCcceEEEcCCC-CceeeEEEEccCCCCCceeEEEEEEcCCCcceEEEEEE
Q psy7036         129 RLLFECR-IQADPAPTVIWSHSGVQVKEDKRHKFSIDKDG-HSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLN  205 (254)
Q Consensus       129 ~~~l~C~-~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~  205 (254)
                      .+.-.|. +.|.|++.|+|.-+   +............++ ....+.+.+-..+..|.-..+|.+..........+.|+
T Consensus        22 v~VA~CiSa~GrPpa~ItW~t~---l~G~~etq~~~~~~GT~TV~S~y~lVPs~~~~gk~lTCvV~h~~~~~~~~~~L~   97 (98)
T cd05890          22 MLVATCVSANGKPPSVVRWDTR---LKGEAEFQEIRNQNGTVTVISRYRLVPSREAHKQKLTCIVNYRNDRFTDSVTLN   97 (98)
T ss_pred             EEEEEEEcCCCcCCcEeEEEcc---CCCceeeeeeCCCCCCEEEEEEEEEeECHHHcCCEeEEEEEeccccccccEEec
Confidence            4566788 66889999999742   211111111122222 23445666666667777799999988755444444443

Ig2_Nectin-1_like: domain similar to the second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectins also heterophilically trans-interact with other CAMs such as nectin-like molecules (necls); nectin-1 for example, has been shown to trans-interact with necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is associ

>KOG0613|consensus

Probab=94.58  E-value=0.081  Score=46.76  Aligned_cols=174  Identities=17%  Similarity=0.160  Sum_probs=99.1

Q ss_pred             eCCCceeecCCCeEEEEEEEeeCCCCc-eEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcC
Q psy7036          13 QKPQLRQEDEGNRLIFECQLLCNPKPD-IVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNK   91 (254)
Q Consensus        13 ~~~~~~~v~~g~~v~l~C~~~~~~~~~-v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~   91 (254)
                      .....+.+..+..+++.|...+.+.+. +.||+++.....+..-...   .........+.|..+...+.+.|.|.+.|.
T Consensus       339 ~~~~~v~a~d~~~v~m~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~---~~~~~ts~~~~~~~~~~~e~~~~~~~a~n~  415 (1205)
T KOG0613|consen  339 VRNLSVTARDNTLVEMPTALSGTQKPDEAQGYHGEEVSSESLGALPC---PVGTVTSHTYTIKDAGPGEGYFTRVPAVNK  415 (1205)
T ss_pred             cccceeccccCcceeecccccCCcCCchheeeccccccccccccccc---ccccccCcchhhhhcCcccccccccceecc
Confidence            344555677888899999998877765 9999987655443311111   111222337889999999999999999999


Q ss_pred             CCceEEEEEEEEeccccCCCCCccccCCCeeeecC--CCeEEEEEEEeeCCCC--eEEEEECCEecccCCcceEEEcCCC
Q psy7036          92 MGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDD--GKRLLFECRIQADPAP--TVIWSHSGVQVKEDKRHKFSIDKDG  167 (254)
Q Consensus        92 ~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~--g~~~~l~C~~~~~~~~--~~~W~~~~~~~~~~~~~~~~~~~~~  167 (254)
                      .|.........|..... +..+.............  -+.+.+.|...+++.+  .++|++++-......   .......
T Consensus       416 ~g~~~~~~~~~vs~~~~-gt~~~~~kk~~~~t~~L~~~~~i~~~~~~~s~~~~~~~~tt~~~~~~~s~~s---~~l~r~~  491 (1205)
T KOG0613|consen  416 GGTEQTIAESTVSEEMP-GTQPPKFKKDVSTTDLLTVKDEITVRTPDSSTSMPMTTVTTIKDGLPLSDRS---VTLTRDV  491 (1205)
T ss_pred             CCcccccchhhcccccC-CCCCccccccccccccccCCcccccccCCCCccccceeEeeccCCccccccc---ccccccc
Confidence            88755444334432211 12222222222222222  3677888887777644  455666543332111   1111111


Q ss_pred             CceeeEEEEccCCCCCceeEEEEEEcCCC
Q psy7036         168 HSYFASLEIIDVTIEDAGKYKVTAKNELG  196 (254)
Q Consensus       168 ~~~~~~l~i~~~~~~d~G~y~C~~~~~~~  196 (254)
                         ..+|.+......+.+.|.-......+
T Consensus       492 ---~tslLlk~~~~~~~A~~~~a~~~~~~  517 (1205)
T KOG0613|consen  492 ---LTSLLLKVASLSDGAQYTRALRTLQG  517 (1205)
T ss_pred             ---hhhheeeccCCCccchhhhhhhccCC
Confidence               12566666677788887555444433

>cd05890 Ig2_Nectin-1_like Second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins

Probab=93.61  E-value=0.49  Score=28.61  Aligned_cols=63  Identities=13%  Similarity=0.082  Sum_probs=38.5

Q ss_pred             EEEEEEE-eeCCCCceEEEeC--CEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcCCC
Q psy7036          26 LIFECQL-LCNPKPDIVWFRG--ETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMG   93 (254)
Q Consensus        26 v~l~C~~-~~~~~~~v~W~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~   93 (254)
                      +.-.|.+ .|.|...|+|.-+  |..     ........++.-...+.+.+-.....|.-..+|++....-
T Consensus        23 ~VA~CiSa~GrPpa~ItW~t~l~G~~-----etq~~~~~~GT~TV~S~y~lVPs~~~~gk~lTCvV~h~~~   88 (98)
T cd05890          23 LVATCVSANGKPPSVVRWDTRLKGEA-----EFQEIRNQNGTVTVISRYRLVPSREAHKQKLTCIVNYRND   88 (98)
T ss_pred             EEEEEEcCCCcCCcEeEEEccCCCce-----eeeeeCCCCCCEEEEEEEEEeECHHHcCCEeEEEEEeccc
Confidence            4557985 6789999999842  322     1111112233334445666666777777899999986543

Ig2_Nectin-1_like: domain similar to the second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectins also heterophilically trans-interact with other CAMs such as nectin-like molecules (necls); nectin-1 for example, has been shown to trans-interact with necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is associ

>KOG1026|consensus

Probab=92.59  E-value=0.37  Score=40.93  Aligned_cols=158  Identities=18%  Similarity=0.201  Sum_probs=86.5

Q ss_pred             eeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcCCCceEE
Q psy7036          18 RQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAA   97 (254)
Q Consensus        18 ~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~   97 (254)
                      ..+..|..+++.|...+.+.+...|+.++............-.  +    . ...+.+        +.|...+..+....
T Consensus       202 ~~v~~~~~~~~~c~~~~~~vp~~~~~~~~~~~~~~~~~~~~c~--~----~-~~~~~~--------~~c~~E~~~~~~~~  266 (774)
T KOG1026|consen  202 LTVEEGSSITLKCSQAGIPVPCHYWFPNCLASSNTNQTSSLCR--S----E-CEVLEN--------DLCIAENAVARSNP  266 (774)
T ss_pred             hhhcccchheeeeecccCCCcceeeecccccccCCCccccccc--c----c-ceeeec--------hhhHHHHhhhhcCc
Confidence            4567899999999999999999999987766544322211100  0    0 111111        88998888887766


Q ss_pred             EEEEEEeccccCCCCCccccCCCeeeecCCCeEEEEEEE---eeCCCCeEEEEECCEecccCCcceEEEcCC-CCceeeE
Q psy7036          98 SINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRI---QADPAPTVIWSHSGVQVKEDKRHKFSIDKD-GHSYFAS  173 (254)
Q Consensus        98 ~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~---~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~-~~~~~~~  173 (254)
                      .+.+.+.      .++.........    +.  .-.|..   .+.+.+...|..++..+............. +     .
T Consensus       267 ~v~~~~~------~p~~~~~~~~~~----~~--~~~C~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~t~s~~~~-----C  329 (774)
T KOG1026|consen  267 SILLVVD------LPKAEVLLCSPL----SD--HHNCIPIGITANPGPALHWCYNGSGLNYRGTVCVTKSGKEQ-----C  329 (774)
T ss_pred             eeeeEEe------cccccccCCCCc----cc--cCceeeeeccCCCCCceeeeecCccceEecccccccccCcC-----C
Confidence            6666554      221111110100    00  222332   245666788888776543222211111111 1     2


Q ss_pred             EEEccCCCCCceeEEEEEEcCCCcceEEEEEEEe
Q psy7036         174 LEIIDVTIEDAGKYKVTAKNELGESNATISLNFD  207 (254)
Q Consensus       174 l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~v~  207 (254)
                      +........+.|.|.|.+.+..|.........+.
T Consensus       330 ~~~~~~~h~~~~~~~~~~e~~~g~~~~r~~g~~~  363 (774)
T KOG1026|consen  330 LPWNDPPHSHNGNYTLFPELPGGKNYCRNPGGFM  363 (774)
T ss_pred             cccCcCcccccCcceeeecccCccccccCcCccc
Confidence            3333335667899999999988765444433333

>PF03921 ICAM_N: Intercellular adhesion molecule (ICAM), N-terminal domain; InterPro: IPR013768 Intercellular adhesion molecules (ICAMs) and vascular cell adhesion molecule-1 (VCAM-1) are part of the immunoglobulin superfamily

Probab=91.50  E-value=2  Score=25.99  Aligned_cols=78  Identities=21%  Similarity=0.232  Sum_probs=47.5

Q ss_pred             eEeCCCceeecCCCeEEEEEEEeeCCCC-ceEEEeC--CEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEE
Q psy7036          11 FTQKPQLRQEDEGNRLIFECQLLCNPKP-DIVWFRG--ETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVK   87 (254)
Q Consensus        11 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~-~v~W~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~   87 (254)
                      +.+.|+...|..|+++.+.|... -+.+ .+-|.-.  ...+.....             -..+.+.|++. | ..-.|.
T Consensus         6 v~v~P~~~vV~~G~Sv~VNCSts-C~~p~~~GLET~L~k~~~~~g~~-------------W~~f~LsnV~~-d-s~~~C~   69 (91)
T PF03921_consen    6 VRVSPEEPVVPPGGSVWVNCSTS-CPQPEKIGLETSLSKTELDSGPQ-------------WKAFQLSNVTE-D-SSPLCF   69 (91)
T ss_dssp             EEEESSEEEEETTEEEEEEEEES-SSS-SEEEEESSSEEEEEEEETT-------------EEEEEEEEE-S-C-EEEEEE
T ss_pred             EEEECCccEECCCCCEEEEEcCC-CCCCCcceEEEecCCcccCCCCc-------------EEEEEEEcccc-C-CeEEEE
Confidence            45678888999999999999985 3333 3344321  111212111             12678888886 4 456788


Q ss_pred             EEcCCCceEEEEEEEEe
Q psy7036          88 AKNKMGEVAASINLNFS  104 (254)
Q Consensus        88 ~~~~~~~~~~~~~l~v~  104 (254)
                      +.-...+...+..|+|.
T Consensus        70 ~~C~g~Q~~~~~~ItVY   86 (91)
T PF03921_consen   70 FNCSGEQSSASANITVY   86 (91)
T ss_dssp             EEETTEEEEEEEEEEEE
T ss_pred             EEcCCeEEEeEEeeEEe
Confidence            87544455667777776

They are important in inflammation, immune responses and in intracellular signalling events []. The ICAM family consists of five members, designated ICAM-1 to ICAM-5. They are known to bind to leucocyte integrins CD11/CD18 during inflammation and in immune responses. In addition, ICAMs may exist in soluble forms in human plasma, due to activation and proteolysis mechanisms at cell surfaces. ICAM-1 (CD54) contains five Ig-like domains. It is expressed on leucocytes, endothelial and epithelial cells, and is upregulated in response to bacterial invasion. The protein is a ligand for lymphocyte-function associated (LFA) antigens and also a receptor for CD11a,b/CD18, fibrinogen, human rhinovirus and Plasmodium falciparum-infected erythrocytes. ICAM-1 binding sites for CD11a/CD18 and its other binding partners are located in the first domain and are overlapping. ICAM-1 domain 2 seems to play an important role in maintaining the conformation of domain 1 and particularly the structural integrity of the LFA-1 ligand-binding site []. The 3-dimensional atomic structure of the tandem N-terminal Ig-like domains (D1 and D2) of ICAM-1 has been determined to 2.2A resolution and fitted into a cryoelectron microscopy reconstruction of a rhinovirus-ICAM-1 complex []. Extensive charge interactions between ICAM-1 and human rhinovirusesare largely conserved in major and minor receptor groups of rhinoviruses. The interaction of ICAMs with LFA-1 is mediated by a divalent cation bound to the insertion (I)-domain on the alpha chain of LFA-1 and the carboxyl group of a conserved glutamic acid residue on ICAMs. ICAM-2 (CD102) has two Ig-like domains. It is expressed on endothelial cells, leucocytes and platelets, and binds to CD11a'b/CD18. The protein is refractory to proinflammatory cytokines, and plays an important role in the adhesion of leucocytes to the uninduced endothelium []. ICAM-3 (CD50) contains five Ig-like domains and binds to leucocyte integrins CD11a'd/CD18. The protein plays an important role in the immune response and perhaps in signal transduction []. ICAM-4 (LW blood group Ag) is red blood cell (RBC) specific and binds to CD11a'b/CD18. It is associated with the RBC Rh antigens and could be important in retaining immature red cells in the bone marrow, or in the uptake of senescent cells into the spleen []. ICAM-5 (telencephalin) has nine Ig-like domains and is confined to the telencephalon of the brain. The role of this CD11a/CD18 binding molecule is not yet known []. VCAM-1 was first described as a cytokine-inducible endothelial adhesion molecule. It can bind to leucocyte integrin VL-4 (very late antigen-4) to recruit leucocytes to sites of inflammation []. The predominant form of VCAM-1 in vivo has an N-terminal extracellular region comprising seven Ig-like domains []. A conserved integrin-binding motif has been identified in domains 1 and 4, variants of which are present in the N-terminal domain of all members of the integrin-binding subgroup of the immunoglobulin superfamily. The structure of a VLA-4-binding fragment comprising the first two domains of VCAM-1 has been determined to 1.8A resolution. The integrin-binding motif is exposed and forms the N-terminal region of the loop between beta-strands C and D of domain 1 []. VCAM-1 domains 1 and 2 are structurally similar to ICAM-1 and ICAM-2 []. This entry represents the N-terminal domain of ICAM proteins such as ICAM-2, ICAM-3 and ICAM-4.; PDB: 3BN3_B 1T0P_B 1ZXQ_A 3TCX_A 1MQ8_A 1Z7Z_I 1IC1_A 1IAM_A.

>TIGR00864 PCC polycystin cation channel protein

Probab=91.43  E-value=17  Score=36.52  Aligned_cols=197  Identities=14%  Similarity=0.146  Sum_probs=105.2

Q ss_pred             CCceeecCCCeEEEEEEEeeCCCCceEEEeCCE-EeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEE--EEEcC
Q psy7036          15 PQLRQEDEGNRLIFECQLLCNPKPDIVWFRGET-QLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKV--KAKNK   91 (254)
Q Consensus        15 ~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C--~~~~~   91 (254)
                      .....+..|+.++|.+.+...+...+.|...+. .........+.                 -+-..-|.|..  .+.|.
T Consensus      1874 as~~~~~~n~~v~fsa~l~~GS~Vtf~w~fGdgs~~~~t~~~t~~-----------------HsY~~~G~Y~VtV~A~N~ 1936 (2740)
T TIGR00864      1874 ASKKIAAIGEKVEFQILLAAGSAVNFRLQIGGAAPEVLQPGPRFS-----------------HSFPRVDDHMVNLRAKNE 1936 (2740)
T ss_pred             cccccccCCCEEEEEEEecCCCceEEEEEeCCCCceeecCCCeEE-----------------eecCCCCcEEEEEEEEec
Confidence            344467789999999998766677888976543 22111111111                 11223455544  44566


Q ss_pred             CCceEEEEEEEEeccccCCCCCccccCCC-eeeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCCCCce
Q psy7036          92 MGEVAASINLNFSREQIDGLAPTFLKKPS-IRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSY  170 (254)
Q Consensus        92 ~~~~~~~~~l~v~~~~~~~~~~~~~~~~~-~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~  170 (254)
                      .+.......+.|.+...     .+.+... ...+..|+..++...+....+..+.|+..-..+.....  +.....    
T Consensus      1937 Vs~~~a~~~V~Vle~V~-----gL~I~~~c~~~~~~g~~~tF~A~v~~g~~V~f~W~f~~~~~~g~~~--~~~~G~---- 2005 (2740)
T TIGR00864      1937 VSCAQANLHIEVLEAVR-----GLQIPDCCAAGIATGEEKNFTANVQRGKPVAFAWTFDLHHLHGDSL--VIHMGK---- 2005 (2740)
T ss_pred             cceeeeeEEEEEEEecc-----ceEecCCcccceecCceEEEEEEEecCCceEEEEEeeecccCCCcc--eeecCC----
Confidence            66666666666654211     1111111 11256788999999987666678999865433332222  111111    


Q ss_pred             eeEEEEccCCCCCceeEEE--EEEcCCCcceEEEEEEEecCCCCCCCCCCCCeeecCCccccccCCCCcEEEEEEEeccC
Q psy7036         171 FASLEIIDVTIEDAGKYKV--TAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLVGEP  248 (254)
Q Consensus       171 ~~~l~i~~~~~~d~G~y~C--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~l~C~~~~~p  248 (254)
                        .++..   ....|.|.-  .|.|..+....+..+.|+...       ....+...|  .....+. .+.+.|.+...+
T Consensus      2006 --~vty~---~~~~G~~~I~v~A~N~l~s~n~t~~i~VQ~~i-------~~~~L~~~p--~~~~~n~-~v~f~~~~~~~~ 2070 (2740)
T TIGR00864      2006 --DVSYT---AEAAGLLEIQLGAFNALGAENITLQLEAQDAL-------MDAALQAGP--QDCFTNK-MAQFEAATSPKP 2070 (2740)
T ss_pred             --ceEEc---cCCCcEEEEEEEEEcccCcccccEEEEEEehe-------eeEEEeecC--cceecCc-eEEEEEEEccCC
Confidence              11111   236787765  566877877777777776411       111222222  2344466 888888875443


Q ss_pred             C-CceeC
Q psy7036         249 E-PTISW  254 (254)
Q Consensus       249 ~-p~~~W  254 (254)
                      . ..+.|
T Consensus      2071 ~~v~~~W 2077 (2740)
T TIGR00864      2071 NFMACHW 2077 (2740)
T ss_pred             CcEEEEE
Confidence            2 24554

Note: this model has been restricted to the amino half because for technical reasons.

>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs)

Probab=91.35  E-value=2  Score=25.79  Aligned_cols=74  Identities=15%  Similarity=0.161  Sum_probs=44.8

Q ss_pred             CCCCCeeEeCCCceee--cCC--CeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCC
Q psy7036           5 EDFAPSFTQKPQLRQE--DEG--NRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETD   80 (254)
Q Consensus         5 ~~~~p~~~~~~~~~~v--~~g--~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d   80 (254)
                      ...+|.|+.++....+  ..+  +...|.+.+.+. ...+.||.||..+.......             .+.+.   ...
T Consensus         7 ~~~~l~I~~P~~g~~~~~~~~~~~~~~l~l~a~~~-~~~~~W~vdg~~~g~~~~~~-------------~~~~~---~~~   69 (89)
T PF06832_consen    7 SGSPLRITSPPDGAVLALDPGIPERQPLVLKAAGG-RGPVYWFVDGEPLGTTQPGH-------------QLFWQ---PDR   69 (89)
T ss_pred             CCCCCEEEecCCCCEEEeCCCCCccceEEEEEeCC-CCcEEEEECCEEcccCCCCC-------------eEEeC---CCC
Confidence            3456677665544433  222  245666666655 44899999999984433221             23332   356


Q ss_pred             CeEEEEEEEcCCCce
Q psy7036          81 AGLYKVKAKNKMGEV   95 (254)
Q Consensus        81 ~G~Y~C~~~~~~~~~   95 (254)
                      .|.|+-.+....|..
T Consensus        70 ~G~h~l~vvD~~G~~   84 (89)
T PF06832_consen   70 PGEHTLTVVDAQGRS   84 (89)
T ss_pred             CeeEEEEEEcCCCCE
Confidence            789988887777764

A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.

>PHA03189 UL14 tegument protein; Provisional

Probab=90.27  E-value=3.7  Score=30.81  Aligned_cols=87  Identities=18%  Similarity=0.226  Sum_probs=44.8

Q ss_pred             CCceeecCCCeEEEEEEEee--CCCCceE-----EEe----------CCEEeeeCCcc-----eEEEeecCCcceEEEEE
Q psy7036          15 PQLRQEDEGNRLIFECQLLC--NPKPDIV-----WFR----------GETQLSEDTRT-----VMKTTPIGTNKYLVALE   72 (254)
Q Consensus        15 ~~~~~v~~g~~v~l~C~~~~--~~~~~v~-----W~~----------~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~   72 (254)
                      |....+-.|+.|++.|.+-.  .|...++     |-.          .|..+.++-..     ...+...+. .-..+|.
T Consensus        59 pAP~l~pyGdrvtVpC~fp~H~WPevsIrarfCys~e~s~eLv~da~~G~~l~ndl~~~L~~~~W~Fedlg~-aq~ltLt  137 (348)
T PHA03189         59 PAPLLVPYGDRVTVPCTFPTHDWPEVSIRARFCYSPERSRELVVDADSGGELHNDLTYRLPEASWKFEDLGA-AQRLTLT  137 (348)
T ss_pred             CCccccCCCceeeeeeeecCCCCceeeEEEEEeeccccceEEEEEcccCCEeccccceecccceeeeecccc-eeEEEEE
Confidence            55667889999999999843  3443332     211          12222221111     111111111 1112344


Q ss_pred             EeccCCCCCeEEEEEEEcCCCceEEEEEEEE
Q psy7036          73 LDDVIETDAGLYKVKAKNKMGEVAASINLNF  103 (254)
Q Consensus        73 i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v  103 (254)
                      + ++.-+.+|.|.|+..|..........+.|
T Consensus       138 F-~v~t~taG~Y~CvLrN~tHglv~~rf~iv  167 (348)
T PHA03189        138 F-RVSTSTAGMYECVLRNETHGLVLQRFVIV  167 (348)
T ss_pred             E-EEEecccceEEEEeccccceeeeEEeeee
Confidence            4 45567899999999987655333333334

>PHA03240 envelope glycoprotein M; Provisional

Probab=88.84  E-value=0.76  Score=32.20  Aligned_cols=69  Identities=14%  Similarity=0.237  Sum_probs=39.1

Q ss_pred             ceeecCCCeEEEEEEEeeCCCCceEEEe-------C-CE---Ee----e--eCCcceEEEeecCC----cceEEEEEEec
Q psy7036          17 LRQEDEGNRLIFECQLLCNPKPDIVWFR-------G-ET---QL----S--EDTRTVMKTTPIGT----NKYLVALELDD   75 (254)
Q Consensus        17 ~~~v~~g~~v~l~C~~~~~~~~~v~W~~-------~-~~---~~----~--~~~~~~~~~~~~~~----~~~~~~l~i~~   75 (254)
                      ++.+.+|++|+|.-.---.+...+.||+       . |.   ++    .  ++....+.......    ...+++|.|.+
T Consensus        32 evt~r~G~nVTLga~~~lhpgq~v~Wy~~~c~~~~G~G~~~~plC~Ytppk~~r~ktl~~t~~nt~i~y~C~NstL~i~~  111 (258)
T PHA03240         32 EHTTREGDPLLLGGGHGLGAGQKAHWYKHKCDGITGNGDKLHPICTYDPPKNGKGKTLDESAENSFILYECHNSTLIIAH  111 (258)
T ss_pred             ecccccCCceeeCCcccCCCCCEEEEEeeecccccCCCCCCceeEEecCCccccccccccccCCCceEEEeccceEEEEE
Confidence            4567899999996543224677899998       1 11   11    0  01100111111000    12345889999


Q ss_pred             cCCCCCeEEE
Q psy7036          76 VIETDAGLYK   85 (254)
Q Consensus        76 ~~~~d~G~Y~   85 (254)
                      +..+|.|+|.
T Consensus       112 vn~sd~~nYc  121 (258)
T PHA03240        112 LNLSDAGEYC  121 (258)
T ss_pred             EeecCcchhh
Confidence            9999999983

>PHA03112 IL-18 binding protein; Provisional

Probab=87.81  E-value=5  Score=26.46  Aligned_cols=73  Identities=15%  Similarity=0.229  Sum_probs=38.5

Q ss_pred             cCCCeEEEEEEEeeC-CC-CceEEEeCC-EEeeeC-C--c--ceEE---EeecCCcceEEEEEEeccCCC-CCeEEEEEE
Q psy7036          21 DEGNRLIFECQLLCN-PK-PDIVWFRGE-TQLSED-T--R--TVMK---TTPIGTNKYLVALELDDVIET-DAGLYKVKA   88 (254)
Q Consensus        21 ~~g~~v~l~C~~~~~-~~-~~v~W~~~~-~~~~~~-~--~--~~~~---~~~~~~~~~~~~l~i~~~~~~-d~G~Y~C~~   88 (254)
                      .+|+++.|+|.+-+. |. .-+.|..++ +..... .  .  .+..   ......+.....+.+.+++.. +.-.++|+.
T Consensus        36 k~~~~vvL~C~gcs~fp~fS~lYWl~gn~~s~~d~~~~~hy~e~~~~~~~~~~~~~~~~~~l~l~~vt~~~~~T~~TCVL  115 (141)
T PHA03112         36 KETEKVVLECRGCSYFPKFSYVYWLIGNNKSDVDQKPIEHYGEGIYESEKPRTCDNEPRTDLIVYNVTDEMKFTKLTCVL  115 (141)
T ss_pred             CCCCEEEEEEECccCCCCceEEEEEcCCCccchhccccccccccccCCccccccCCcceeEEEEEecCCcceecceEEEE
Confidence            579999999999753 54 357899655 322100 0  0  0000   000111123346676777644 334788877


Q ss_pred             EcCCC
Q psy7036          89 KNKMG   93 (254)
Q Consensus        89 ~~~~~   93 (254)
                      ....+
T Consensus       116 ~D~~~  120 (141)
T PHA03112        116 MDLDG  120 (141)
T ss_pred             ecCCc
Confidence            65544

>PHA03052 Hypothetical protein; Provisional

Probab=85.87  E-value=3.7  Score=23.07  Aligned_cols=34  Identities=21%  Similarity=0.445  Sum_probs=25.9

Q ss_pred             CeeeecCCCeEEEEEEEeeCC---CCeEEEEECCEec
Q psy7036         120 SIRQEDDGKRLLFECRIQADP---APTVIWSHSGVQV  153 (254)
Q Consensus       120 ~~~~~~~g~~~~l~C~~~~~~---~~~~~W~~~~~~~  153 (254)
                      ..+.+..|..+++.|.+.-.+   .+.+.|..|+..+
T Consensus         5 ~~i~~slGs~ltI~Ckv~lg~g~~~a~V~W~~N~~~~   41 (69)
T PHA03052          5 EGIVTSLGSNLTITCKVSLRPPTTDADVFWISNGMYY   41 (69)
T ss_pred             ccEEEEccCCceEeEEEEecCCCcceEEEEEeCCcEE
Confidence            445677899999999987433   4468999988776

>PF02124 Marek_A: Marek's disease glycoprotein A; InterPro: IPR001038 Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) glycoprotein 13 (EHV-1 gp13) has the characteristic features of a membrane-spanning protein: an N-terminal signal sequence; a hydrophobic membrane anchor region; a charged C-terminal cytoplasmic tail; and an exterior domain with nine potential N-glycosylation sites []

Probab=82.82  E-value=15  Score=26.30  Aligned_cols=97  Identities=14%  Similarity=0.168  Sum_probs=50.2

Q ss_pred             eEEEEECCEecccCCc-ceEEEcCCC-CceeeEEEEccC-CCCCceeEEEEEEcCCCcc-eEEEEEEEecCCCCCCCCCC
Q psy7036         143 TVIWSHSGVQVKEDKR-HKFSIDKDG-HSYFASLEIIDV-TIEDAGKYKVTAKNELGES-NATISLNFDSDDAPVPGEGT  218 (254)
Q Consensus       143 ~~~W~~~~~~~~~~~~-~~~~~~~~~-~~~~~~l~i~~~-~~~d~G~y~C~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~  218 (254)
                      .+.|+.|+..+..... .......+| ....++|.+... ..+..-..+|.+....... ...+...+            
T Consensus         8 ~~~Wf~dg~~v~~~~~~~~~~~~~~G~~s~vStl~~~~~~~~~~pp~i~C~v~W~r~~v~~~r~~a~~------------   75 (211)
T PF02124_consen    8 RFRWFEDGNPVEPRFIRDSSQVWSDGLFSRVSTLTLPGNSADSPPPSIRCQVTWYRDSVSETRFNATA------------   75 (211)
T ss_pred             EEEEEECCEeCCccceeeEEEEecCCcEEEEEEEEecCCCCCCCCCcceEEEEEccCCCeeeEeeccc------------
Confidence            5899999998763321 112222234 445567777333 3344558999988755433 22222222            


Q ss_pred             CCeeecCCccccccCCCCcEEEEEEEeccCCC--ceeC
Q psy7036         219 KPVFTERPVTKQSDDDLNDIVIECRLVGEPEP--TISW  254 (254)
Q Consensus       219 ~p~~~~~~~~~~~~~g~~~~~l~C~~~~~p~p--~~~W  254 (254)
                      .|.+...|....-..+   ....|.|.--|..  .+.|
T Consensus        76 ~P~Vy~~P~vsv~F~~---g~AVC~A~CVP~~~v~l~W  110 (211)
T PF02124_consen   76 TPSVYPKPRVSVRFED---GYAVCTARCVPRGNVTLRW  110 (211)
T ss_pred             ccceecCCEEEEEecC---CEEEEEcceeeCCCeEEEE
Confidence            2333333322222233   3677888766643  4666

EHV-1 gp13 is the structural homologue of the gC-like glycoproteins of the Human herpesvirus 1 (HHV-1) and Human herpesvirus 2 (HHV-2) (gC-1 and gC-2 respectively), Pseudorabies virus (strain Indiana-Funkhauser/Becker) (PRV) (gIII) and Human herpesvirus 3 (HHV-3) (gp66). Secretory glycoprotein GP57-65 precursor (glycoprotein A - GA) is similar to Herpesvirus glycoprotein C, and belongs to the immunoglobulin gene superfamily [, ]. GA is thought to play an immunoevasive role in the pathogenesis of Marek's disease. It is a candidate for causing the early-stage immunosuppression that occurs after MDHV infection.

>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []

Probab=82.73  E-value=8.3  Score=23.28  Aligned_cols=65  Identities=12%  Similarity=0.266  Sum_probs=38.8

Q ss_pred             eeecCCCeEEEEEEEeeC-----CCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEE
Q psy7036         122 RQEDDGKRLLFECRIQAD-----PAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAK  192 (254)
Q Consensus       122 ~~~~~g~~~~l~C~~~~~-----~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~  192 (254)
                      ..+..|..++..|.....     ....+.|..++..+.....   ...+++.   +.+++.+......-.|.|...
T Consensus        13 pvv~lGS~vtasC~l~~~c~~~~~a~~I~Wkln~~~iP~~qy---~~in~~~---SsVT~~~~~~~~~~L~cC~l~   82 (89)
T PF06328_consen   13 PVVSLGSNVTASCVLKQNCSHSVNASQIVWKLNGEKIPGSQY---RVINDTV---SSVTLPNLNPTGATLFCCKLA   82 (89)
T ss_dssp             SEEETTS-EEEEEEE-CCCHCT-STTCEEEECSSCESTCGCE---EEESTTE---EEEEESS--SSEEEEEEEEEC
T ss_pred             CEEeCCCCEEEEEEEECCCCCCcccceEEEEECCEECChhHc---ceeCCeE---EEEEEccCCCCCceEEEEEEc
Confidence            356789999999997632     3456999988886654432   2222322   467777776655556777643

The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.

>PHA03283 envelope glycoprotein E; Provisional

Probab=81.89  E-value=27  Score=28.70  Aligned_cols=79  Identities=13%  Similarity=0.211  Sum_probs=48.6

Q ss_pred             EEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEEeccccCC--CCCcc-ccCCC------------eeeecCCCeEEEEE
Q psy7036          70 ALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDG--LAPTF-LKKPS------------IRQEDDGKRLLFEC  134 (254)
Q Consensus        70 ~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~--~~~~~-~~~~~------------~~~~~~g~~~~l~C  134 (254)
                      .|.|.+++..++|.|+-...+..+.....+.|.|..+....  .|+.. ...+.            ......|+++.+.-
T Consensus       135 ~l~I~~at~~~aGVYtly~r~d~~~~~~vflvtVk~~~~~~~~~Pp~~~pv~P~~h~a~f~v~nYhS~vf~~GDtf~lsi  214 (542)
T PHA03283        135 VLQIQRATPNIAGVYTLHVSSDGMMKHSVFFVTVKKPPKQPQTPPAPLVPQVPARHHTDFHVRGYHSRVYSPGDSFDLSV  214 (542)
T ss_pred             eeEEEecccccCeEEEEEecCCCceEEEEEEEEecCCCcCCCCCCCCccccCCccCCceEEEecceeEEecCCCceeEeE
Confidence            79999999999999999888776655666677776522211  11211 10000            12345788888866


Q ss_pred             EEeeCC-----CCeEEEEE
Q psy7036         135 RIQADP-----APTVIWSH  148 (254)
Q Consensus       135 ~~~~~~-----~~~~~W~~  148 (254)
                      ......     ...+.|+.
T Consensus       215 ~l~s~~~d~~fs~~i~Wyy  233 (542)
T PHA03283        215 HLESDIGDPSFSATIDWYY  233 (542)
T ss_pred             EEeeccCCCCceEEEEEEE
Confidence            654321     23688986

>PHA03112 IL-18 binding protein; Provisional

Probab=81.75  E-value=9.2  Score=25.27  Aligned_cols=77  Identities=17%  Similarity=0.190  Sum_probs=40.1

Q ss_pred             cCCCeEEEEEEEeeC-CC-CeEEEEECC-EecccCCc-----ceE----EEcCCCCceeeEEEEccCCCC-CceeEEEEE
Q psy7036         125 DDGKRLLFECRIQAD-PA-PTVIWSHSG-VQVKEDKR-----HKF----SIDKDGHSYFASLEIIDVTIE-DAGKYKVTA  191 (254)
Q Consensus       125 ~~g~~~~l~C~~~~~-~~-~~~~W~~~~-~~~~~~~~-----~~~----~~~~~~~~~~~~l~i~~~~~~-d~G~y~C~~  191 (254)
                      .+++.+.|.|.+.+. |. .-+.|..++ +.......     .+.    ....-...-.+.|.+.+++.+ +.-.++|..
T Consensus        36 k~~~~vvL~C~gcs~fp~fS~lYWl~gn~~s~~d~~~~~hy~e~~~~~~~~~~~~~~~~~~l~l~~vt~~~~~T~~TCVL  115 (141)
T PHA03112         36 KETEKVVLECRGCSYFPKFSYVYWLIGNNKSDVDQKPIEHYGEGIYESEKPRTCDNEPRTDLIVYNVTDEMKFTKLTCVL  115 (141)
T ss_pred             CCCCEEEEEEECccCCCCceEEEEEcCCCccchhccccccccccccCCccccccCCcceeEEEEEecCCcceecceEEEE
Confidence            358899999998765 43 358899765 22211100     000    000011122345666776643 333788887


Q ss_pred             EcCCCcceEE
Q psy7036         192 KNELGESNAT  201 (254)
Q Consensus       192 ~~~~~~~~~~  201 (254)
                      ....+..+.+
T Consensus       116 ~D~~~~~k~~  125 (141)
T PHA03112        116 MDLDGPIKKS  125 (141)
T ss_pred             ecCCchhhHH
Confidence            7665544433

>PF11049 KSHV_K1: Glycoprotein K1 of Kaposi's sarcoma-associated herpes virus; InterPro: IPR021022 This is a highly glycosylated cytoplasmic and membrane protein similar to the immunoglobulin receptor family that is expressed as an inducible early-lytic-cycle gene product in primary effusion lymphoma cell-lines

Probab=81.51  E-value=3.4  Score=22.97  Aligned_cols=44  Identities=16%  Similarity=0.290  Sum_probs=27.1

Q ss_pred             EEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEc
Q psy7036          27 IFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKN   90 (254)
Q Consensus        27 ~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~   90 (254)
                      +|+|...  ...-++||-||..+-.-...              ++.+.++    .++|+|+-..
T Consensus         2 tltC~s~--~sLPiswYcN~TRLlRlt~~--------------Tlt~~~l----tcNFtCV~qS   45 (71)
T PF11049_consen    2 TLTCPSN--ASLPISWYCNGTRLLRLTQQ--------------TLTVVTL----TCNFTCVGQS   45 (71)
T ss_pred             ceecCCC--CCCcccEEECCceeeeecCC--------------eEeeeee----eEEeeecCCC
Confidence            5778764  44558999999876433221              3444333    5788897553

This domain would appear to be the cytoplasmic region of the protein [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	254
3b43_A	570	I-band Fragment I65-i70 From Titin Length = 570		8e-14
1ya5_A	201	Crystal Structure Of The Titin Domains Z1z2 In Comp		1e-13
2a38_A	194	Crystal Structure Of The N-Terminus Of Titin Length		1e-13
3laf_A	403	Structure Of Dcc, A Netrin-1 Receptor Length = 403		9e-12
2xy1_A	192	Crystal Structure Of Ncam2 Ig3-4 Length = 192		1e-11
2rik_A	284	I-Band Fragment I67-I69 From Titin Length = 284		1e-11
2rjm_A	284	3ig Structure Of Titin Domains I67-I69 E-To-A Mutat		2e-11
2iep_A	192	Crystal Structure Of Immunoglobulin-Like Domains 1		1e-08
2iep_A	192	Crystal Structure Of Immunoglobulin-Like Domains 1		4e-05
3kld_A	384	Ptprg Cntn4 Complex Length = 384		1e-08
3kld_A	384	Ptprg Cntn4 Complex Length = 384		9e-06
3jxa_A	383	Immunoglobulin Domains 1-4 Of Mouse Cntn4 Length =		1e-08
3jxa_A	383	Immunoglobulin Domains 1-4 Of Mouse Cntn4 Length =		1e-05
3knb_A	100	Crystal Structure Of The Titin C-Terminus In Comple		2e-08
3pxj_A	210	Tandem Ig Repeats Of Dlar Length = 210		2e-08
3pxj_A	210	Tandem Ig Repeats Of Dlar Length = 210		3e-08
2wp3_T	102	Crystal Structure Of The Titin M10-Obscurin Like 1		2e-08
2yd1_A	212	Crystal Structure Of The N-Terminal Ig1-2 Module Of		2e-08
1qz1_A	291	Crystal Structure Of The Ig 1-2-3 Fragment Of Ncam		4e-08
1qz1_A	291	Crystal Structure Of The Ig 1-2-3 Fragment Of Ncam		3e-05
2yd6_A	212	Crystal Structure Of The N-Terminal Ig1-2 Module Of		4e-08
2yd6_A	212	Crystal Structure Of The N-Terminal Ig1-2 Module Of		3e-04
2v9q_A	212	First And Second Ig Domains From Human Robo1 Length		5e-08
2v9q_A	212	First And Second Ig Domains From Human Robo1 Length		6e-05
3dmk_A	816	Crystal Structure Of Down Syndrome Cell Adhesion Mo		6e-08
2nzi_A	305	Crystal Structure Of Domains A168-A170 From Titin L		6e-08
2nzi_A	305	Crystal Structure Of Domains A168-A170 From Titin L		2e-04
2om5_A	381	N-Terminal Fragment Of Human Tax1 Length = 381		7e-08
3p3y_A	404	Crystal Structure Of Neurofascin Homophilic Adhesio		8e-08
3p3y_A	404	Crystal Structure Of Neurofascin Homophilic Adhesio		4e-06
2dm3_A	110	Solution Structure Of The Second Ig Domain Of Human		1e-07
3pxh_A	201	Tandem Ig Domains Of Tyrosine Phosphatase Lar Lengt		2e-07
3pxh_A	201	Tandem Ig Domains Of Tyrosine Phosphatase Lar Lengt		8e-06
2yd9_A	304	Crystal Structure Of The N-Terminal Ig1-3 Module Of		3e-07
2kdg_A	100	Solution Structure Of The 1st Ig Domain Of Myotilin		3e-07
1ry7_B	334	Crystal Structure Of The 3 Ig Form Of Fgfr3c In Com		4e-07
1nct_A	106	Titin Module M5, N-Terminally Extended, Nmr Length		9e-07
2ill_A	195	Anomalous Substructure Of Titin-A168169 Length = 19		1e-06
2ill_A	195	Anomalous Substructure Of Titin-A168169 Length = 19		1e-04
2j8h_A	197	Structure Of The Immunoglobulin Tandem Repeat A168-		1e-06
2j8h_A	197	Structure Of The Immunoglobulin Tandem Repeat A168-		1e-04
2kkq_A	116	Solution Nmr Structure Of The Ig-Like C2-Type 2 Dom		2e-06
2jll_A	389	Crystal Structure Of Ncam2 Igiv-Fn3ii Length = 389		2e-06
2xyc_A	291	Crystal Structure Of Ncam2 Igiv-Fn3i Length = 291		2e-06
1cvs_C	225	Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex L		3e-06
1cvs_C	225	Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex L		8e-04
3ojv_C	226	Crystal Structure Of Fgf1 Complexed With The Ectodo		3e-06
3ojv_C	226	Crystal Structure Of Fgf1 Complexed With The Ectodo		7e-04
1fhg_A	154	High Resolution Refinement Of Telokin Length = 154		3e-06
2yd5_A	214	Crystal Structure Of The N-Terminal Ig1-2 Module Of		3e-06
1tlk_A	154	X-Ray Structure Determination Of Telokin, The C-Ter		4e-06
1evt_C	225	Crystal Structure Of Fgf1 In Complex With The Extra		4e-06
1evt_C	225	Crystal Structure Of Fgf1 In Complex With The Extra		9e-04
1tnm_A	100	Tertiary Structure Of An Immunoglobulin-Like Domain		5e-06
2fdb_P	220	Crystal Structure Of Fibroblast Growth Factor (Fgf)		6e-06
2fdb_P	220	Crystal Structure Of Fibroblast Growth Factor (Fgf)		8e-04
1iil_E	220	Crystal Structure Of Pro253arg Apert Mutant Fgf Rec		6e-06
1iil_E	220	Crystal Structure Of Pro253arg Apert Mutant Fgf Rec		8e-04
1koa_A	491	Twitchin Kinase Fragment (C.Elegans), Autoregulated		8e-06
1wwc_A	118	Nt3 Binding Domain Of Human Trkc Receptor Length =		8e-06
2v5t_A	189	Crystal Structure Of Ncam2 Ig2-3 Length = 189		9e-06
1cs6_A	382	N-terminal Fragment Of Axonin-1 From Chicken Length		1e-05
1e0o_B	219	Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin C		1e-05
1e0o_B	219	Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin C		8e-04
3ojm_B	231	Crystal Structure Of Fgf1 Complexed With The Ectodo		1e-05
3ojm_B	231	Crystal Structure Of Fgf1 Complexed With The Ectodo		8e-04
2wim_A	291	Crystal Structure Of Ncam2 Ig1-3 Length = 291		1e-05
1ev2_E	220	Crystal Structure Of Fgf2 In Complex With The Extra		1e-05
1ev2_E	220	Crystal Structure Of Fgf2 In Complex With The Extra		9e-04
1ii4_E	220	Crystal Structure Of Ser252trp Apert Mutant Fgf Rec		1e-05
2vra_A	208	Drosophila Robo Ig1-2 (Monoclinic Form) Length = 20		2e-05
2vr9_A	217	Drosophila Robo Ig1-2 (Tetragonal Form) Length = 21		2e-05
3oj2_C	231	Crystal Structure Of Fgf1 Complexed With The Ectodo		2e-05
3oj2_C	231	Crystal Structure Of Fgf1 Complexed With The Ectodo		8e-04
2wwk_O	109	Crystal Structure Of The Titin M10-Obscurin Like 1		4e-05
2yd3_A	202	Crystal Structure Of The N-Terminal Ig1-2 Module Of		5e-05
2yd3_A	202	Crystal Structure Of The N-Terminal Ig1-2 Module Of		5e-04
2yd4_A	210	Crystal Structure Of The N-Terminal Ig1-2 Module Of		5e-05
3lcy_A	197	Titin Ig Tandem Domains A164-A165 Length = 197		6e-05
3uto_A	573	Twitchin Kinase Region From C.Elegans (Fn31-Nl-Kin-		6e-05
3puc_A	99	Atomic Resolution Structure Of Titin Domain M7 Leng		6e-05
2yd2_A	214	Crystal Structure Of The N-Terminal Ig1-2 Module Of		7e-05
2yd2_A	214	Crystal Structure Of The N-Terminal Ig1-2 Module Of		5e-04
3qp3_A	103	Crystal Structure Of Titin Domain M4, Tetragonal Fo		7e-05
1djs_A	216	Ligand-binding Portion Of Fibroblast Growth Factor		7e-05
2lqr_A	108	Nmr Structure Of Ig3 Domain Of Palladin Length = 10		1e-04
2lqr_A	108	Nmr Structure Of Ig3 Domain Of Palladin Length = 10		1e-04
3grw_A	241	Fgfr3 In Complex With A Fab Length = 241		1e-04
3knb_B	107	Crystal Structure Of The Titin C-Terminus In Comple		1e-04
2dm2_A	110	Solution Structure Of The First Ig Domain Of Human		2e-04
2dm2_A	110	Solution Structure Of The First Ig Domain Of Human		2e-04
2wp3_O	109	Crystal Structure Of The Titin M10-Obscurin Like 1		2e-04
1nun_B	230	Crystal Structure Analysis Of The Fgf10-fgfr2b Comp		2e-04
1u2h_A	99	X-Ray Structure Of The N-Terminally Truncated Human		9e-04

>pdb|3B43|A Chain A, I-band Fragment I65-i70 From Titin Length = 570

Iteration: 1
 Score = 73.9 bits (180), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 61/247 (24%), Positives = 105/247 (42%), Gaps = 22/247 (8%)
Query: 9   PSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYL 68
           P F +  +  +   G  +  +C++   P+  I W++  T+L       M+         +
Sbjct: 6   PYFIEPLEHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQF-----KNNV 60
Query: 69  VALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDGK 128
            +L ++ V  +D G Y  KA+N +G VA+S  L     +   L P+F +K     E  G 
Sbjct: 61  ASLVINKVDHSDVGEYTCKAENSVGAVASSAVLVIKERK---LPPSFARKLKDVHETLGF 117
Query: 129 RLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYK 188
            + FECRI       V W   G  +K+D   + S   +     A+L+I+       G+Y 
Sbjct: 118 PVAFECRINGSEPLQVSWYKDGELLKDDANLQTSFIHN----VATLQILQTDQSHVGQYN 173
Query: 189 VTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDI-VIECRLVGE 247
            +A N LG ++++  L     + P       P F  +PV+   D  L +    +C + G 
Sbjct: 174 CSASNPLGTASSSAKLTLSEHEVP-------PFFDLKPVS--VDLALGESGTFKCHVTGT 224
Query: 248 PEPTISW 254
               I+W
Sbjct: 225 APIKITW 231

>pdb|1YA5|A Chain A, Crystal Structure Of The Titin Domains Z1z2 In Complex With Telethonin Length = 201

Iteration: 1
 Score = 73.2 bits (178), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 53/197 (26%), Positives = 87/197 (44%), Gaps = 10/197 (5%)
Query: 8   APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKY 67
           AP+FTQ  Q     EG+   FE  +   P P++ WFR    +S  T   +    I  +  
Sbjct: 5   APTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTST---LPGVQISFSDG 61
Query: 68  LVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDG 127
              L +  V + ++G Y +KA N  G+  ++  L    E      P F+++        G
Sbjct: 62  RAKLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAP---PNFVQRLQSMTVRQG 118
Query: 128 KRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKY 187
            ++  + R+   P P V +   G +++      F I ++G  Y  SL I +   ED+G Y
Sbjct: 119 SQVRLQVRVTGIPTPVVKFYRDGAEIQSS--LDFQISQEGDLY--SLLIAEAYPEDSGTY 174
Query: 188 KVTAKNELGESNATISL 204
            V A N +G + +T  L
Sbjct: 175 SVNATNSVGRATSTAEL 191

>pdb|2A38|A Chain A, Crystal Structure Of The N-Terminus Of Titin Length = 194

Iteration: 1
 Score = 73.2 bits (178), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 53/197 (26%), Positives = 87/197 (44%), Gaps = 10/197 (5%)
Query: 8   APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKY 67
           AP+FTQ  Q     EG+   FE  +   P P++ WFR    +S  T   +    I  +  
Sbjct: 5   APTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTST---LPGVQISFSDG 61
Query: 68  LVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDG 127
              L +  V + ++G Y +KA N  G+  ++  L    E      P F+++        G
Sbjct: 62  RAKLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAP---PNFVQRLQSMTVRQG 118
Query: 128 KRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKY 187
            ++  + R+   P P V +   G +++      F I ++G  Y  SL I +   ED+G Y
Sbjct: 119 SQVRLQVRVTGIPTPVVKFYRDGAEIQSS--LDFQISQEGDLY--SLLIAEAYPEDSGTY 174
Query: 188 KVTAKNELGESNATISL 204
            V A N +G + +T  L
Sbjct: 175 SVNATNSVGRATSTAEL 191

>pdb|3LAF|A Chain A, Structure Of Dcc, A Netrin-1 Receptor Length = 403

Iteration: 1
 Score = 67.0 bits (162), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 64/244 (26%), Positives = 114/244 (46%), Gaps = 45/244 (18%)
Query: 23  GNRLIFECQLLCNPKPDIVWFRGETQLSE---DTRTVMKTTPIGTNKYLVALELDDVIET 79
           G+ ++ +C+++ +P P I W + +  L+    D+R V+   P G      AL++  +   
Sbjct: 136 GDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSRVVV--LPSG------ALQISRLQPG 187
Query: 80  DAGLYKVKAKNKM-------GEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLF 132
           D+G+Y+  A+N          EV    +    R+        FL++PS     +GK  + 
Sbjct: 188 DSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLY------FLQRPSNVIAIEGKDAVL 241
Query: 133 ECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYK--VT 190
           EC +   P P+  W   G +V + +  K+S+        ++L I +VT +D+G Y   VT
Sbjct: 242 ECCVSGYPPPSFTWLR-GEEVIQLRSKKYSLLGG-----SNLLISNVTDDDSGTYTCVVT 295
Query: 191 AKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLVGEPEP 250
            KNE   ++A +++        VP     P F   P    + + + DI  EC + G+P P
Sbjct: 296 YKNENISASAELTV-------LVP-----PWFLNHPSNLYAYESM-DIEFECAVSGKPVP 342
Query: 251 TISW 254
           T++W
Sbjct: 343 TVNW 346

>pdb|2XY1|A Chain A, Crystal Structure Of Ncam2 Ig3-4 Length = 192

Iteration: 1
 Score = 66.6 bits (161), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 52/203 (25%), Positives = 90/203 (44%), Gaps = 17/203 (8%)
Query: 8   APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKY 67
           A S  QK      + G  + F C+   +P+P I WFR    + E+ + ++K    G+N  
Sbjct: 4   AISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILK----GSN-- 57
Query: 68  LVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDG 127
              L + ++I +D G Y  +A NK GE      L         + P  ++  +    ++G
Sbjct: 58  -TELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVF------VQPHIIQLKNETTYENG 110
Query: 128 KRLLFECRIQADPAPTVIWSHS--GVQVKE-DKRHKFSIDKDGHSYFASLEIIDVTIEDA 184
           +  L  C  + +P P + W  +  G    E DK     I+  G    +SL I DV + D+
Sbjct: 111 QVTLV-CDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDS 169
Query: 185 GKYKVTAKNELGESNATISLNFD 207
           G+Y   A + +G    ++ L+ +
Sbjct: 170 GRYDCEAASRIGGHQKSMYLDIE 192

>pdb|2RIK|A Chain A, I-Band Fragment I67-I69 From Titin Length = 284

Iteration: 1
 Score = 66.6 bits (161), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 50/211 (23%), Positives = 100/211 (47%), Gaps = 22/211 (10%)
Query: 1   MGIAEDFAPSFTQK---PQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVM 57
           +G+ E   P F +K    ++ ++DE  R  +EC++  +P+  ++W++ ET++ E ++  M
Sbjct: 93  LGVQE--PPRFIKKLEPSRIVKQDEHTR--YECKIGGSPEIKVLWYKDETEIQESSKFRM 148
Query: 58  KTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLK 117
                   + +  LE+ ++   D+G Y  +A N  G  ++S +L           P F K
Sbjct: 149 SFV-----ESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKE------PPVFRK 197
Query: 118 KPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEII 177
           KP   +   G  +  EC +Q  P   V W     +++  K++K   +    ++  S+ I+
Sbjct: 198 KPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSE----NFLTSIHIL 253
Query: 178 DVTIEDAGKYKVTAKNELGESNATISLNFDS 208
           +V   D G+Y+  A N++G      S+   +
Sbjct: 254 NVDSADIGEYQCKASNDVGSYTCVGSITLKA 284

>pdb|2RJM|A Chain A, 3ig Structure Of Titin Domains I67-I69 E-To-A Mutated Variant Length = 284

Iteration: 1
 Score = 66.2 bits (160), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 48/203 (23%), Positives = 96/203 (47%), Gaps = 20/203 (9%)
Query: 9   PSFTQK---PQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTN 65
           P F +K    ++ ++DE  R  +EC++  +P+  ++W++ ET++ E ++  M        
Sbjct: 99  PRFIKKLEPSRIVKQDEHTR--YECKIGGSPEIKVLWYKDETEIQESSKFRMSFV----- 151
Query: 66  KYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQED 125
           + +  LE+ ++   D+G Y  +A N  G  ++S +L           P F KKP   +  
Sbjct: 152 ESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKE------PPVFRKKPHPVETL 205
Query: 126 DGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAG 185
            G  +  EC +Q  P   V W     +++  K++K   +    ++  S+ I++V   D G
Sbjct: 206 KGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSE----NFLTSIHILNVDSADIG 261
Query: 186 KYKVTAKNELGESNATISLNFDS 208
           +Y+  A N++G      S+   +
Sbjct: 262 EYQCKASNDVGSYTCVGSITLKA 284

>pdb|2IEP|A Chain A, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2 Of The Receptor Tyrosine Kinase Musk Length = 192

Iteration: 1
 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/172 (26%), Positives = 78/172 (45%), Gaps = 20/172 (11%)
Query: 28  FECQLLCNPKPDIVWFRGETQLSE-DTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKV 86
           F C +   P+P+I W R +  +   DTR  ++       + L  L ++D   +D G+Y  
Sbjct: 27  FMCAVESYPQPEISWTRNKILIKLFDTRYSIREN----GQLLTILSVED---SDDGIYCC 79
Query: 87  KAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIW 146
            A N +G    S        Q+  + P   + P   +  +G + +  C    +P P+V W
Sbjct: 80  TANNGVGGAVESCG----ALQVK-MKPKITRPPINVKIIEGLKAVLPCTTMGNPKPSVSW 134
Query: 147 SHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGES 198
                 ++E+ R   ++ + G     SL I +V  EDAG+Y+  AKN LG +
Sbjct: 135 IKGDSALRENSR--IAVLESG-----SLRIHNVQKEDAGQYRCVAKNSLGTA 179

>pdb|2IEP|A Chain A, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2 Of The Receptor Tyrosine Kinase Musk Length = 192

Iteration: 1
 Score = 45.1 bits (105), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 58/127 (45%), Gaps = 23/127 (18%)
Query: 132 FECRIQADPAPTVIWSHSGVQVKE-DKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVT 190
           F C +++ P P + W+ + + +K  D R  +SI ++G      L I+ V   D G Y  T
Sbjct: 27  FMCAVESYPQPEISWTRNKILIKLFDTR--YSIRENGQL----LTILSVEDSDDGIYCCT 80
Query: 191 AKNELG---ESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLVGE 247
           A N +G   ES   + +              KP  T  P+  +  + L   V+ C  +G 
Sbjct: 81  ANNGVGGAVESCGALQVKM------------KPKITRPPINVKIIEGLKA-VLPCTTMGN 127
Query: 248 PEPTISW 254
           P+P++SW
Sbjct: 128 PKPSVSW 134

>pdb|3KLD|A Chain A, Ptprg Cntn4 Complex Length = 384

Iteration: 1
 Score = 56.6 bits (135), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 48/196 (24%), Positives = 84/196 (42%), Gaps = 23/196 (11%)
Query: 2   GIAEDFAPSF-TQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTT 60
           G+  ++ P    Q P+    ++G  +  EC  L NP P I+W R + +         K+ 
Sbjct: 198 GVMGEYEPKIEVQFPETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKARRHKSN 257
Query: 61  PIGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPS 120
            I        LE+ +  + DAG Y+  A+N  G+  A   L F  +      P +++  +
Sbjct: 258 GI--------LEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYAQ------PNWVQIIN 303
Query: 121 IRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVT 180
                  + + +EC+    P PT  W  +G  +    R +  I++       +L I  V 
Sbjct: 304 DIHVAMEESVFWECKANGRPKPTYRWLKNGDPLL--TRDRIQIEQ------GTLNITIVN 355
Query: 181 IEDAGKYKVTAKNELG 196
           + DAG Y+  A+N+ G
Sbjct: 356 LSDAGMYQCVAENKHG 371

>pdb|3KLD|A Chain A, Ptprg Cntn4 Complex Length = 384

Iteration: 1
 Score = 47.0 bits (110), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 56/241 (23%), Positives = 89/241 (36%), Gaps = 51/241 (21%)
Query: 32  LLCNPKP-----DIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKV 86
           LLC P P        W   E    +D R  +       N Y+  +E  DV      +   
Sbjct: 122 LLCGPPPHSGELSYAWIFNEYPSYQDNRRFVSQET--GNLYIAKVEKSDVGNYTCVVTNT 179
Query: 87  KAKNK-MGEVAASINLNFSREQIDGLAPTFLKK-----PSIRQEDDGKRLLFECRIQADP 140
              +K +G     I  N      DG+   +  K     P     + G  +  EC    +P
Sbjct: 180 VTNHKVLGPPTPLILRN------DGVMGEYEPKIEVQFPETVPAEKGTTVKLECFALGNP 233
Query: 141 APTVIWSHSGVQ--VKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGES 198
            PT++W  +  +   ++ +RHK +           LEI +   EDAG Y+  A+N  G++
Sbjct: 234 VPTILWRRADGKPIARKARRHKSN---------GILEIPNFQQEDAGSYECVAENSRGKN 284
Query: 199 NATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLN-----DIVIECRLVGEPEPTIS 253
            A   L F +                +P   Q  +D++      +  EC+  G P+PT  
Sbjct: 285 VAKGQLTFYA----------------QPNWVQIINDIHVAMEESVFWECKANGRPKPTYR 328
Query: 254 W 254
           W
Sbjct: 329 W 329

>pdb|3JXA|A Chain A, Immunoglobulin Domains 1-4 Of Mouse Cntn4 Length = 383

Iteration: 1
 Score = 56.6 bits (135), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 48/196 (24%), Positives = 84/196 (42%), Gaps = 23/196 (11%)
Query: 2   GIAEDFAPSF-TQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTT 60
           G+  ++ P    Q P+    ++G  +  EC  L NP P I+W R + +         K+ 
Sbjct: 197 GVMGEYEPKIEVQFPETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKARRHKSN 256
Query: 61  PIGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPS 120
            I        LE+ +  + DAG Y+  A+N  G+  A   L F  +      P +++  +
Sbjct: 257 GI--------LEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYAQ------PNWVQIIN 302
Query: 121 IRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVT 180
                  + + +EC+    P PT  W  +G  +    R +  I++       +L I  V 
Sbjct: 303 DIHVAMEESVFWECKANGRPKPTYRWLKNGDPLL--TRDRIQIEQ------GTLNITIVN 354
Query: 181 IEDAGKYKVTAKNELG 196
           + DAG Y+  A+N+ G
Sbjct: 355 LSDAGMYQCVAENKHG 370

>pdb|3JXA|A Chain A, Immunoglobulin Domains 1-4 Of Mouse Cntn4 Length = 383

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 56/241 (23%), Positives = 89/241 (36%), Gaps = 51/241 (21%)
Query: 32  LLCNPKP-----DIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKV 86
           LLC P P        W   E    +D R  +       N Y+  +E  DV      +   
Sbjct: 121 LLCGPPPHSGELSYAWIFNEYPSYQDNRRFVSQET--GNLYIAKVEKSDVGNYTCVVTNT 178
Query: 87  KAKNK-MGEVAASINLNFSREQIDGLAPTFLKK-----PSIRQEDDGKRLLFECRIQADP 140
              +K +G     I  N      DG+   +  K     P     + G  +  EC    +P
Sbjct: 179 VTNHKVLGPPTPLILRN------DGVMGEYEPKIEVQFPETVPAEKGTTVKLECFALGNP 232
Query: 141 APTVIWSHSGVQ--VKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGES 198
            PT++W  +  +   ++ +RHK +           LEI +   EDAG Y+  A+N  G++
Sbjct: 233 VPTILWRRADGKPIARKARRHKSN---------GILEIPNFQQEDAGSYECVAENSRGKN 283
Query: 199 NATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLN-----DIVIECRLVGEPEPTIS 253
            A   L F +                +P   Q  +D++      +  EC+  G P+PT  
Sbjct: 284 VAKGQLTFYA----------------QPNWVQIINDIHVAMEESVFWECKANGRPKPTYR 327
Query: 254 W 254
           W
Sbjct: 328 W 328

>pdb|3KNB|A Chain A, Crystal Structure Of The Titin C-Terminus In Complex With Obscurin- Like 1 Length = 100

Iteration: 1
 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 49/99 (49%), Gaps = 2/99 (2%)
Query: 110 GLAPTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHS 169
           G+ P     PS    D+GK L   C    +P P V WS  G ++   ++ +F I+     
Sbjct: 3   GIPPKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENT--D 60
Query: 170 YFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFDS 208
              +L I+DV  +D G Y ++  NE G  +AT++++  S
Sbjct: 61  DLTTLIIMDVQKQDGGLYTLSLGNEFGSDSATVNIHIRS 99

>pdb|3PXJ|A Chain A, Tandem Ig Repeats Of Dlar Length = 210

Iteration: 1
 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 51/196 (26%), Positives = 85/196 (43%), Gaps = 15/196 (7%)
Query: 9   PSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLS-EDTRTVMKTTPIGTNKY 67
           P   +KPQ +    G    F C    +P P IVW +   ++S   +R  +   P G    
Sbjct: 9   PEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGG---- 64
Query: 68  LVALELDDV-IETDAGLYKVKAKNKMGE-VAASINLN-FSREQIDGLAPTFLKKPSIRQE 124
           +  L ++ V    D   Y+  A+N +G+ V+A   L  +  ++     P   + P  R  
Sbjct: 65  ISILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVI 124
Query: 125 DDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDA 184
           + G  +L  C+   +P P + W  +  Q K D  +     KDG      L+I +   ED 
Sbjct: 125 EVGHTVLMTCKAIGNPTPNIYWIKN--QTKVDMSNPRYSLKDGF-----LQIENSREEDQ 177
Query: 185 GKYKVTAKNELGESNA 200
           GKY+  A+N +G  ++
Sbjct: 178 GKYECVAENSMGTEHS 193

>pdb|3PXJ|A Chain A, Tandem Ig Repeats Of Dlar Length = 210

Iteration: 1
 Score = 55.5 bits (132), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 35/145 (24%), Positives = 71/145 (48%), Gaps = 10/145 (6%)
Query: 113 PTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFA 172
           P  ++KP  +    G    F C  + DP P+++W  +G +V   +     +++ G     
Sbjct: 9   PEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISIL 68
Query: 173 SLEIIDVTIEDAGKYKVTAKNELGE---SNATISLNFDSDDAPVPGEGTKPVFTERPVTK 229
            +E +    +DA  Y+  A+N +G+   ++AT+++ ++ D  P       PV T+ P T+
Sbjct: 69  RIEPVRAGRDDA-PYECVAENGVGDAVSADATLTI-YEGDKTPA----GFPVITQGPGTR 122
Query: 230 QSDDDLNDIVIECRLVGEPEPTISW 254
             +   + +++ C+ +G P P I W
Sbjct: 123 VIEVG-HTVLMTCKAIGNPTPNIYW 146

>pdb|2WP3|T Chain T, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig Complex Length = 102

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 49/99 (49%), Gaps = 2/99 (2%)
Query: 110 GLAPTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHS 169
           G+ P     PS    D+GK L   C    +P P V WS  G ++   ++ +F I+     
Sbjct: 5   GIPPKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENT--D 62
Query: 170 YFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFDS 208
              +L I+DV  +D G Y ++  NE G  +AT++++  S
Sbjct: 63  DLTTLIIMDVQKQDGGLYTLSLGNEFGSDSATVNIHIRS 101

>pdb|2YD1|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Drosophila Receptor Protein Tyrosine Phosphatase Dlar Length = 212

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 35/145 (24%), Positives = 71/145 (48%), Gaps = 10/145 (6%)
Query: 113 PTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFA 172
           P  ++KP  +    G    F C  + DP P+++W  +G +V   +     +++ G     
Sbjct: 7   PEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISIL 66
Query: 173 SLEIIDVTIEDAGKYKVTAKNELGE---SNATISLNFDSDDAPVPGEGTKPVFTERPVTK 229
            +E +    +DA  Y+  A+N +G+   ++AT+++ ++ D  P       PV T+ P T+
Sbjct: 67  RIEPVRAGRDDA-PYECVAENGVGDAVSADATLTI-YEGDKTPA----GFPVITQGPGTR 120
Query: 230 QSDDDLNDIVIECRLVGEPEPTISW 254
             +   + +++ C+ +G P P I W
Sbjct: 121 VIEVG-HTVLMTCKAIGNPTPNIYW 144

>pdb|1QZ1|A Chain A, Crystal Structure Of The Ig 1-2-3 Fragment Of Ncam Length = 291

Iteration: 1
 Score = 55.1 bits (131), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 53/203 (26%), Positives = 93/203 (45%), Gaps = 28/203 (13%)
Query: 11  FTQKPQLRQEDEGNRLIFECQLLCNPKPDIVW-FRG-ETQLSEDTRTVMKTTPIGTNKYL 68
           F   P  ++  EG   +  C ++ +  P I+W  +G +  L +D R +     + +N YL
Sbjct: 103 FKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFI-----VLSNNYL 157
Query: 69  VALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQ-IDGLAPTFLKKPSI--RQED 125
              ++  + +TD G Y+ +     G + A   +NF   Q I  + PT   + SI     +
Sbjct: 158 ---QIRGIKKTDEGTYRCE-----GRILARGEINFKDIQVIVNVPPTVQARQSIVNATAN 209
Query: 126 DGKRLLFECRIQADPAPTVIWSHSGVQVK----EDKRHKFSIDKDGHSYFASLEIIDVTI 181
            G+ +   C     P PT+ W+  G  ++    +D++H FS D       + L I +V  
Sbjct: 210 LGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDS------SELTIRNVDK 263
Query: 182 EDAGKYKVTAKNELGESNATISL 204
            D  +Y   A+N+ GE +A+I L
Sbjct: 264 NDEAEYVCIAENKAGEQDASIHL 286

>pdb|1QZ1|A Chain A, Crystal Structure Of The Ig 1-2-3 Fragment Of Ncam Length = 291

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 54/240 (22%), Positives = 102/240 (42%), Gaps = 34/240 (14%)
Query: 23  GNRLIFECQLLCNPK-PDIVWF--RGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIET 79
           G    F CQ+  + K  DI WF   GE +LS + +   + + +  +     L + +    
Sbjct: 17  GESKFFLCQVAGDAKDKDISWFSPNGE-KLSPNQQ---RISVVWNDDDSSTLTIYNANID 72
Query: 80  DAGLYKVKAKNKMG-EVAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQA 138
           DAG+YK     + G +  A++N+   ++ +      F   P+ ++  +G+  +  C + +
Sbjct: 73  DAGIYKCVVTAEDGTQSEATVNVKIFQKLM------FKNAPTPQEFKEGEDAVIVCDVVS 126
Query: 139 DPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKY----KVTAKNE 194
              PT+IW H G  V   K  +F +  + +     L+I  +   D G Y    ++ A+ E
Sbjct: 127 SLPPTIIWKHKGRDVILKKDVRFIVLSNNY-----LQIRGIKKTDEGTYRCEGRILARGE 181
Query: 195 LGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLVGEPEPTISW 254
           +   +  + +N      P   +  + +        QS      + + C   G PEPT+SW
Sbjct: 182 INFKDIQVIVN-----VPPTVQARQSIVNATANLGQS------VTLVCDADGFPEPTMSW 230

>pdb|2YD6|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Delta Length = 212

Iteration: 1
 Score = 55.1 bits (131), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 47/199 (23%), Positives = 79/199 (39%), Gaps = 25/199 (12%)
Query: 9   PSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLS----------EDTRTVMK 58
           P FT+ P  +    G    F CQ   +P+P IVW +   ++S          + + +V++
Sbjct: 7   PRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVLR 66
Query: 59  TTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSRE-QIDGLAPTFLK 117
             P+ T +             D  +Y+  A N +GE++ S  L   RE QI    PT   
Sbjct: 67  IQPLRTPR-------------DEAIYECVASNNVGEISVSTRLTVLREDQIPRGFPTIDM 113
Query: 118 KPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEII 177
            P ++  +  +     C    +P P + W    + V +   +   I +       +L+I 
Sbjct: 114 GPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPV-DTSNNNGRIKQLRSESIGALQIE 172
Query: 178 DVTIEDAGKYKVTAKNELG 196
                D GKY+  A N  G
Sbjct: 173 QSEESDQGKYECVATNSAG 191

>pdb|2YD6|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Delta Length = 212

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/142 (23%), Positives = 57/142 (40%), Gaps = 6/142 (4%)
Query: 113 PTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFA 172
           P F + P  +    G    F C+   DP P ++W+  G +V   +      D DG     
Sbjct: 7   PRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFD-DGSGSVL 65
Query: 173 SLEIIDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSD 232
            ++ +  T  D   Y+  A N +GE + +  L    +D    G  T  +  +  V +++ 
Sbjct: 66  RIQPLR-TPRDEAIYECVASNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQLKVVERT- 123
Query: 233 DDLNDIVIECRLVGEPEPTISW 254
                  + C   G P+P I+W
Sbjct: 124 ---RTATMLCAASGNPDPEITW 142

>pdb|2V9Q|A Chain A, First And Second Ig Domains From Human Robo1 Length = 212

Iteration: 1
 Score = 54.7 bits (130), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 51/206 (24%), Positives = 83/206 (40%), Gaps = 22/206 (10%)
Query: 5   EDFAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQL---SEDTRTVMKTTP 61
           EDF P   + P      +G      C+    P P I W++G  ++    +D R+     P
Sbjct: 6   EDFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLP 65
Query: 62  IGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVA---ASINLNFSREQIDGLAPTFLKK 118
            G+  +L  +        D G+Y   A+N +GE     AS+ +   R+        F + 
Sbjct: 66  SGSLFFLRIVHGRKS-RPDEGVYVCVARNYLGEAVSHDASLEVAILRDD-------FRQN 117
Query: 119 PSIRQEDDGKRLLFECR-IQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEII 177
           PS      G+  + EC+  +  P PT+ W   G  + +DK  + +I          L I 
Sbjct: 118 PSDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPL-DDKDERITIRG------GKLMIT 170
Query: 178 DVTIEDAGKYKVTAKNELGESNATIS 203
                DAGKY     N +GE  + ++
Sbjct: 171 YTRKSDAGKYVCVGTNMVGERESEVA 196

>pdb|2V9Q|A Chain A, First And Second Ig Domains From Human Robo1 Length = 212

Iteration: 1
 Score = 44.3 bits (103), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 40/154 (25%), Positives = 63/154 (40%), Gaps = 29/154 (18%)
Query: 113 PTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQV---KEDKRHKFSIDKDGHS 169
           P  ++ PS      G+     C+ +  P PT+ W   G +V   K+D R    +   G  
Sbjct: 10  PRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSL 69
Query: 170 YFASLEIIDVTIEDAGKYKVTAKNELGES---NATISLNFDSDDAPVPGEGTKPVFTERP 226
           +F  +     +  D G Y   A+N LGE+   +A++ +    DD                
Sbjct: 70  FFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAILRDD---------------- 113
Query: 227 VTKQSDDDL-----NDIVIECR-LVGEPEPTISW 254
             +Q+  D+        V+EC+   G PEPTISW
Sbjct: 114 -FRQNPSDVMVAVGEPAVMECQPPRGHPEPTISW 146

>pdb|3DMK|A Chain A, Crystal Structure Of Down Syndrome Cell Adhesion Molecule (Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains Length = 816

Iteration: 1
 Score = 54.3 bits (129), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 53/250 (21%), Positives = 93/250 (37%), Gaps = 49/250 (19%)
Query: 15  PQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELD 74
           P  +  D G   +F CQ   NP   + W +       D + +  +  +        L ++
Sbjct: 350 PPTQTVDFGRPAVFTCQYTGNPIKTVSWMK-------DGKAIGHSESV--------LRIE 394
Query: 75  DVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQE------DDGK 128
            V + D G+Y+   +N      AS  L                 P IRQ       + G 
Sbjct: 395 SVKKEDKGMYQCFVRNDRESAEASAELKLGGR---------FDPPVIRQAFQEETMEPGP 445
Query: 129 RLLFECRIQADPAPTVIWSHSGVQVKEDKRHKF----SIDKDGHSYFASLEIIDVTIEDA 184
            +  +C    +P P + W   G ++  + R++     +++ D  SY   L I  V   D 
Sbjct: 446 SVFLKCVAGGNPTPEISWELDGKKIANNDRYQVGQYVTVNGDVVSY---LNITSVHANDG 502
Query: 185 GKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRL 244
           G YK  AK+++G +  +  LN              P    R + K++      +++ C +
Sbjct: 503 GLYKCIAKSKVGVAEHSAKLNVYG----------LPYI--RQMEKKAIVAGETLIVTCPV 550
Query: 245 VGEPEPTISW 254
            G P  +I W
Sbjct: 551 AGYPIDSIVW 560

>pdb|2NZI|A Chain A, Crystal Structure Of Domains A168-A170 From Titin Length = 305

Iteration: 1
 Score = 54.3 bits (129), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 55/221 (24%), Positives = 94/221 (42%), Gaps = 25/221 (11%)
Query: 7   FAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFR-GETQLSEDTRTVMKTTPIGTN 65
            AP F ++ +       +     C++  +PKP + W+R G+  +++  +  ++    G +
Sbjct: 3   MAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYH 62
Query: 66  KYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQED 125
           + ++A   DD    DA +Y+V+A N+ G V+ + +L         L P  L+        
Sbjct: 63  QLIIASVTDD----DATVYQVRATNQGGSVSGTASLEVEVPAKIHL-PKTLEGMGAVHAL 117
Query: 126 DGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGH------SYFASLEIID- 178
            G+ +  +      P P + W          ++ +  ID +GH        F SL   + 
Sbjct: 118 RGEVVSIKIPFSGKPDPVITW----------QKGQDLIDNNGHYQVIVTRSFTSLVFPNG 167
Query: 179 VTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTK 219
           V  +DAG Y V AKN  G    T+ L  D  D P P  G K
Sbjct: 168 VERKDAGFYVVCAKNRFGIDQKTVEL--DVADVPDPPRGVK 206

>pdb|2NZI|A Chain A, Crystal Structure Of Domains A168-A170 From Titin Length = 305

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/152 (25%), Positives = 64/152 (42%), Gaps = 22/152 (14%)
Query: 110 GLAPTF---LKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDK-RHKFSIDK 165
            +AP F   L+  ++R + +   +   C++   P P V W   G ++  D  +++    K
Sbjct: 2   AMAPHFKEELRNLNVRYQSNATLV---CKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFK 58
Query: 166 DGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFD---SDDAPVPGEGTKPVF 222
            G   +  L I  VT +DA  Y+V A N+ G  + T SL  +       P   EG   V 
Sbjct: 59  GG---YHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVH 115
Query: 223 TERPVTKQSDDDLNDIVIECRLVGEPEPTISW 254
             R            + I+    G+P+P I+W
Sbjct: 116 ALRGEV---------VSIKIPFSGKPDPVITW 138

>pdb|2OM5|A Chain A, N-Terminal Fragment Of Human Tax1 Length = 381

Iteration: 1
 Score = 54.3 bits (129), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 55/210 (26%), Positives = 81/210 (38%), Gaps = 39/210 (18%)
Query: 4   AED---FAPSFTQK-PQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKT 59
           AED   FAPS   + P       G ++  EC    NP P I W + +  LS    T   T
Sbjct: 198 AEDTRLFAPSIKARFPAETYALVGQQVTLECFAFGNPVPRIKWRKVDGSLSPQWTTAEPT 257
Query: 60  TPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDG-----LAPT 114
                      L++  V   D G Y+ +A+N  G           R+ + G       P 
Sbjct: 258 -----------LQIPSVSFEDEGTYECEAENSKG-----------RDTVQGRIIVQAQPE 295
Query: 115 FLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASL 174
           +LK  S  + D G  L + C     P PTV W  +G  +    R +             L
Sbjct: 296 WLKVISDTEADIGSNLRWGCAAAGKPRPTVRWLRNGEPLASQNRVEV--------LAGDL 347
Query: 175 EIIDVTIEDAGKYKVTAKNELGESNATISL 204
               +++ED+G Y+  A+N+ G   A+  L
Sbjct: 348 RFSKLSLEDSGMYQCVAENKHGTIYASAEL 377

>pdb|3P3Y|A Chain A, Crystal Structure Of Neurofascin Homophilic Adhesion Complex In Space Group P6522 Length = 404

Iteration: 1
 Score = 53.9 bits (128), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 59/214 (27%), Positives = 88/214 (41%), Gaps = 37/214 (17%)
Query: 2   GIAEDFAPSFTQKPQLRQEDE----GNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVM 57
           G+AE   PSF   PQ     +    G  L+ EC     P PDI W++    L  D     
Sbjct: 214 GVAER-TPSFMY-PQGTASSQMVLRGMDLLLECIASGVPTPDIAWYKKGGDLPSDKAKF- 270
Query: 58  KTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLK 117
                    +  AL + +V E D+G Y   A NKMG +  +I++          AP +L 
Sbjct: 271 -------ENFNKALRITNVSEEDSGEYFCLASNKMGSIRHTISVRVK------AAPYWLD 317
Query: 118 KPS---IRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASL 174
           +P    +   +DG+ +   CR   +P PTV W  +G  ++       S   + +   A  
Sbjct: 318 EPKNLILAPGEDGRLV---CRANGNPKPTVQWMVNGEPLQ-------SAPPNPNREVAGD 367
Query: 175 EII--DVTIEDAGKYKVTAKNELGE--SNATISL 204
            II  D  I     Y+    NE G   +NA +S+
Sbjct: 368 TIIFRDTQISSRAVYQCNTSNEHGYLLANAFVSV 401

>pdb|3P3Y|A Chain A, Crystal Structure Of Neurofascin Homophilic Adhesion Complex In Space Group P6522 Length = 404

Iteration: 1
 Score = 48.5 bits (114), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 36/131 (27%), Positives = 56/131 (42%), Gaps = 24/131 (18%)
Query: 127 GKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGK 186
           G  LL EC     P P + W   G  +  DK  KF       ++  +L I +V+ ED+G+
Sbjct: 237 GMDLLLECIASGVPTPDIAWYKKGGDLPSDK-AKF------ENFNKALRITNVSEEDSGE 289
Query: 187 YKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERP---VTKQSDDDLNDIVIECR 243
           Y   A N++G    TIS+   +           P + + P   +    +D      + CR
Sbjct: 290 YFCLASNKMGSIRHTISVRVKA----------APYWLDEPKNLILAPGEDGR----LVCR 335
Query: 244 LVGEPEPTISW 254
             G P+PT+ W
Sbjct: 336 ANGNPKPTVQW 346

>pdb|2DM3|A Chain A, Solution Structure Of The Second Ig Domain Of Human Palladin Length = 110

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 45/95 (47%), Gaps = 3/95 (3%)
Query: 110 GLAPTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHS 169
           G  P FL+ P      +GK    +C++   P P + W   G  V+ D  HK  + ++G  
Sbjct: 7   GFRPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENG-- 64
Query: 170 YFASLEIIDVTIEDAGKYKVTAKNELGESNATISL 204
              SL I  VT  DAG Y   A N  G+++ ++ L
Sbjct: 65  -VHSLIIEPVTSRDAGIYTCIATNRAGQNSFSLEL 98

>pdb|3PXH|A Chain A, Tandem Ig Domains Of Tyrosine Phosphatase Lar Length = 201

Iteration: 1
 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/205 (23%), Positives = 77/205 (37%), Gaps = 26/205 (12%)
Query: 2   GIAEDFAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTP 61
           G   D  P F + P+ +    G    F CQ    PKP I W +   ++S     V++   
Sbjct: 1   GPGSDSKPVFVKVPEDQTGLSGGVASFVCQATGEPKPRITWMKKGKKVSSQRFEVIEFDD 60
Query: 62  IGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSRE-QIDGLAPTFLKKPS 120
            G    L    L   ++ D  +Y+  A N +GE+  S  L+   E Q+    PT    P 
Sbjct: 61  -GAGSVLRIQPLR--VQRDEAIYECTATNSLGEINTSAKLSVLEEDQLPSGFPTIDMGPQ 117
Query: 121 IRQEDDGKRLLFECRIQADPAPTVIW---------SHSGVQVKEDKRHKFSIDKDGHSYF 171
           ++  + G+     C    +P P + W         + S  ++K+ +     I+    S  
Sbjct: 118 LKVVEKGRTATMLCAAGGNPDPEISWFKDFLPVDPAASNGRIKQLRSGALQIESSEES-- 175
Query: 172 ASLEIIDVTIEDAGKYKVTAKNELG 196
                      D GKY+  A N  G
Sbjct: 176 -----------DQGKYECVATNSAG 189

>pdb|3PXH|A Chain A, Tandem Ig Domains Of Tyrosine Phosphatase Lar Length = 201

Iteration: 1
 Score = 47.4 bits (111), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 38/142 (26%), Positives = 58/142 (40%), Gaps = 6/142 (4%)
Query: 113 PTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFA 172
           P F+K P  +    G    F C+   +P P + W   G +V   +      D DG     
Sbjct: 8   PVFVKVPEDQTGLSGGVASFVCQATGEPKPRITWMKKGKKVSSQRFEVIEFD-DGAGSVL 66
Query: 173 SLEIIDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSD 232
            ++ + V  ++A  Y+ TA N LGE N +  L+   +D    G    P     P  K  +
Sbjct: 67  RIQPLRVQRDEA-IYECTATNSLGEINTSAKLSVLEEDQLPSG---FPTIDMGPQLKVVE 122
Query: 233 DDLNDIVIECRLVGEPEPTISW 254
                 ++ C   G P+P ISW
Sbjct: 123 KGRTATML-CAAGGNPDPEISW 143

>pdb|2YD9|A Chain A, Crystal Structure Of The N-Terminal Ig1-3 Module Of Human Receptor Protein Tyrosine Phosphatase Sigma Length = 304

Iteration: 1
 Score = 52.0 bits (123), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 57/266 (21%), Positives = 98/266 (36%), Gaps = 53/266 (19%)
Query: 9   PSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWF---------RGET-QLSEDTRTVMK 58
           P F ++P+ +    G    F CQ   +PKP + W          R ET +  E    V++
Sbjct: 7   PRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLR 66
Query: 59  TTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSRE-QIDGLAPTFLK 117
             P+ T +             D  +Y+  A+N +GE+     L   RE Q+    P    
Sbjct: 67  IQPLRTPR-------------DENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDM 113
Query: 118 KPSIRQEDDGKRLLFECRIQADPAPTVIW---------SHSGVQVKEDKRHKFSIDKDGH 168
            P ++  +  +     C    +P P + W         S S  ++K+ +     I+    
Sbjct: 114 GPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEE 173
Query: 169 SYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVT 228
           +             D GKY+  A N  G   ++ +  +      V  +   P F+  P++
Sbjct: 174 T-------------DQGKYECVATNSAGVRYSSPANLY------VRVQNVAPRFSILPMS 214
Query: 229 KQSDDDLNDIVIECRLVGEPEPTISW 254
            +     N + I C  VG P P + W
Sbjct: 215 HEIMPGGN-VNITCVAVGSPMPYVKW 239

>pdb|2KDG|A Chain A, Solution Structure Of The 1st Ig Domain Of Myotilin Length = 100

Iteration: 1
 Score = 52.0 bits (123), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 44/93 (47%), Gaps = 3/93 (3%)
Query: 113 PTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFA 172
           P F++ P     D+G+    + ++   PAP V W  +G  V+ D  HK  + + G     
Sbjct: 6   PRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKG---LH 62
Query: 173 SLEIIDVTIEDAGKYKVTAKNELGESNATISLN 205
           SL    V   DAG Y   AKN  GE+  T+ L+
Sbjct: 63  SLIFEVVRASDAGAYACVAKNRAGEATFTVQLD 95

>pdb|1RY7|B Chain B, Crystal Structure Of The 3 Ig Form Of Fgfr3c In Complex With Fgf1 Length = 334

Iteration: 1
 Score = 51.6 bits (122), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 49/197 (24%), Positives = 80/197 (40%), Gaps = 28/197 (14%)
Query: 24  NRLIFECQLLCNPKPDIVW------FRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVI 77
           N + F C    NP P I W      FRGE ++            I       +L ++ V+
Sbjct: 139 NTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGG----------IKLRHQQWSLVMESVV 188
Query: 78  ETDAGLYKVKAKNKMGEVAASINLN-FSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRI 136
            +D G Y    +NK G +  +  L+   R     +    L  P+ +    G  + F C++
Sbjct: 189 PSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGL--PANQTAVLGSDVEFHCKV 246
Query: 137 QADPAPTVIW-SH---SGVQVKEDKRHKFSIDKDGHSY-----FASLEIIDVTIEDAGKY 187
            +D  P + W  H   +G +V  D     ++ K   +         L + +VT EDAG+Y
Sbjct: 247 YSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEY 306
Query: 188 KVTAKNELGESNATISL 204
              A N +G S+ +  L
Sbjct: 307 TCLAGNSIGFSHHSAWL 323

>pdb|1NCT|A Chain A, Titin Module M5, N-Terminally Extended, Nmr Length = 106

Iteration: 1
 Score = 50.4 bits (119), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 29/96 (30%), Positives = 40/96 (41%), Gaps = 4/96 (4%)
Query: 111 LAPTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSY 170
           LA   L KP      +G+   F C    +P PTV W   G  +    RH+ +  K    Y
Sbjct: 13  LAARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTK----Y 68
Query: 171 FASLEIIDVTIEDAGKYKVTAKNELGESNATISLNF 206
            ++ EI  V   D G Y V  +N  G+  A  +L  
Sbjct: 69  KSTFEISSVQASDEGNYSVVVENSEGKQEAEFTLTI 104

>pdb|2ILL|A Chain A, Anomalous Substructure Of Titin-A168169 Length = 195

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/201 (22%), Positives = 87/201 (43%), Gaps = 11/201 (5%)
Query: 7   FAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFR-GETQLSEDTRTVMKTTPIGTN 65
            AP F ++ +       +     C++  +PKP + W+R G+  +++  +  ++    G +
Sbjct: 1   MAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYH 60
Query: 66  KYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQED 125
           + ++A   DD    DA +Y+V+A N+ G V+ + +L         L P  L+        
Sbjct: 61  QLIIASVTDD----DATVYQVRATNQGGSVSGTASLEVEVPAKIHL-PKTLEGMGAVHAL 115
Query: 126 DGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIID-VTIEDA 184
            G+ +  +      P P + W      +  +  ++  + +     F SL   + V  +DA
Sbjct: 116 RGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRS----FTSLVFPNGVERKDA 171
Query: 185 GKYKVTAKNELGESNATISLN 205
           G Y V AKN  G    T+ L+
Sbjct: 172 GFYVVCAKNRFGIDQKTVELD 192

>pdb|2ILL|A Chain A, Anomalous Substructure Of Titin-A168169 Length = 195

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/150 (26%), Positives = 63/150 (42%), Gaps = 20/150 (13%)
Query: 111 LAPTF---LKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDG 167
           +AP F   L+  ++R + +   +   C++   P P V W   G ++  D   K+ I +  
Sbjct: 1   MAPHFKEELRNLNVRYQSNATLV---CKVTGHPKPIVKWYRQGKEIIADGL-KYRIQEFK 56
Query: 168 HSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFD---SDDAPVPGEGTKPVFTE 224
             Y   L I  VT +DA  Y+V A N+ G  + T SL  +       P   EG   V   
Sbjct: 57  GGYH-QLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHAL 115
Query: 225 RPVTKQSDDDLNDIVIECRLVGEPEPTISW 254
           R            + I+    G+P+P I+W
Sbjct: 116 RGEV---------VSIKIPFSGKPDPVITW 136

>pdb|2J8H|A Chain A, Structure Of The Immunoglobulin Tandem Repeat A168-A169 Of Titin Length = 197

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/201 (22%), Positives = 87/201 (43%), Gaps = 11/201 (5%)
Query: 7   FAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFR-GETQLSEDTRTVMKTTPIGTN 65
            AP F ++ +       +     C++  +PKP + W+R G+  +++  +  ++    G +
Sbjct: 3   MAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYH 62
Query: 66  KYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQED 125
           + ++A   DD    DA +Y+V+A N+ G V+ + +L         L P  L+        
Sbjct: 63  QLIIASVTDD----DATVYQVRATNQGGSVSGTASLEVEVPAKIHL-PKTLEGMGAVHAL 117
Query: 126 DGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIID-VTIEDA 184
            G+ +  +      P P + W      +  +  ++  + +     F SL   + V  +DA
Sbjct: 118 RGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRS----FTSLVFPNGVERKDA 173
Query: 185 GKYKVTAKNELGESNATISLN 205
           G Y V AKN  G    T+ L+
Sbjct: 174 GFYVVCAKNRFGIDQKTVELD 194

>pdb|2J8H|A Chain A, Structure Of The Immunoglobulin Tandem Repeat A168-A169 Of Titin Length = 197

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/150 (26%), Positives = 63/150 (42%), Gaps = 20/150 (13%)
Query: 111 LAPTF---LKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDG 167
           +AP F   L+  ++R + +   +   C++   P P V W   G ++  D   K+ I +  
Sbjct: 3   MAPHFKEELRNLNVRYQSNATLV---CKVTGHPKPIVKWYRQGKEIIADGL-KYRIQEFK 58
Query: 168 HSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFD---SDDAPVPGEGTKPVFTE 224
             Y   L I  VT +DA  Y+V A N+ G  + T SL  +       P   EG   V   
Sbjct: 59  GGYH-QLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHAL 117
Query: 225 RPVTKQSDDDLNDIVIECRLVGEPEPTISW 254
           R            + I+    G+P+P I+W
Sbjct: 118 RGEV---------VSIKIPFSGKPDPVITW 138

>pdb|2KKQ|A Chain A, Solution Nmr Structure Of The Ig-Like C2-Type 2 Domain Of Human Myotilin. Northeast Structural Genomics Target Hr3158 Length = 116

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 47/96 (48%), Gaps = 6/96 (6%)
Query: 112 APTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSG--VQVKEDKRHKFSIDKDGHS 169
           AP F+ KP  ++  +G  +  EC+I A P P + W  +   VQ   D+   +  D  G  
Sbjct: 15  APMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQ-DNTGR- 72
Query: 170 YFASLEIIDVTIEDAGKYKVTAKNELGESNATISLN 205
              +L I DV  +DAG Y V+A NE G +     L+
Sbjct: 73  --VTLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLD 106

>pdb|2JLL|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3ii Length = 389

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/185 (21%), Positives = 74/185 (40%), Gaps = 12/185 (6%)
Query: 16  QLRQED--EGNRLIFECQLLCNPKPDIVWFRG--ETQLSEDTRTVMKTTPIGTNKYLVAL 71
           QL+ E   E  ++   C     P P+I W R       +E  +++     +       +L
Sbjct: 6   QLKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSL 65
Query: 72  ELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLL 131
            + DV  +D+G Y  +A +++G    S+ L+         AP F+   +I    +G  + 
Sbjct: 66  HIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIE------YAPKFISNQTIYYSWEGNPIN 119
Query: 132 FECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTA 191
             C ++++P  ++ W    + +             G      LEI   +  D G+Y  TA
Sbjct: 120 ISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMI--LEIAPTSDNDFGRYNCTA 177
Query: 192 KNELG 196
            N +G
Sbjct: 178 TNHIG 182

>pdb|2XYC|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3i Length = 291

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/185 (21%), Positives = 74/185 (40%), Gaps = 12/185 (6%)
Query: 16  QLRQED--EGNRLIFECQLLCNPKPDIVWFRG--ETQLSEDTRTVMKTTPIGTNKYLVAL 71
           QL+ E   E  ++   C     P P+I W R       +E  +++     +       +L
Sbjct: 6   QLKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSL 65
Query: 72  ELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLL 131
            + DV  +D+G Y  +A +++G    S+ L+         AP F+   +I    +G  + 
Sbjct: 66  HIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIE------YAPKFISNQTIYYSWEGNPIN 119
Query: 132 FECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTA 191
             C ++++P  ++ W    + +             G      LEI   +  D G+Y  TA
Sbjct: 120 ISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMI--LEIAPTSDNDFGRYNCTA 177
Query: 192 KNELG 196
            N +G
Sbjct: 178 TNHIG 182

>pdb|1CVS|C Chain C, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex Length = 225

Iteration: 1
 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 46/190 (24%), Positives = 78/190 (41%), Gaps = 22/190 (11%)
Query: 28  FECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVA---LELDDVIETDAGLY 84
           F+C     P+P + W +   +   D R       IG  K   A   + +D V+ +D G Y
Sbjct: 36  FKCPSSGTPQPTLRWLKNGKEFKPDHR-------IGGYKVRYATWSIIMDSVVPSDKGNY 88
Query: 85  KVKAKNKMGEVAASINLNF-SREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQADPAPT 143
               +N+ G +  +  L+   R     +    L  P+ +    G  + F C++ +DP P 
Sbjct: 89  TCIVENEYGSINHTYQLDVVERSPHRPILQAGL--PANKTVALGSNVEFMCKVYSDPQPH 146
Query: 144 VIW-SH---SGVQVKEDKRHKFSIDKDGH-----SYFASLEIIDVTIEDAGKYKVTAKNE 194
           + W  H   +G ++  D      I K             L + +V+ EDAG+Y   A N 
Sbjct: 147 IQWLKHIEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEVLHLRNVSFEDAGEYTCLAGNS 206
Query: 195 LGESNATISL 204
           +G S+ +  L
Sbjct: 207 IGLSHHSAWL 216

>pdb|1CVS|C Chain C, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex Length = 225

Iteration: 1
 Score = 40.8 bits (94), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 32/131 (24%), Positives = 53/131 (40%), Gaps = 15/131 (11%)
Query: 127 GKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSY-FASLEII--DVTIED 183
            K + F+C     P PT+ W  +G + K D R        G+   +A+  II   V   D
Sbjct: 31  AKTVKFKCPSSGTPQPTLRWLKNGKEFKPDHR------IGGYKVRYATWSIIMDSVVPSD 84
Query: 184 AGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECR 243
            G Y    +NE G  N T  L+       V     +P+        ++    +++   C+
Sbjct: 85  KGNYTCIVENEYGSINHTYQLDV------VERSPHRPILQAGLPANKTVALGSNVEFMCK 138
Query: 244 LVGEPEPTISW 254
           +  +P+P I W
Sbjct: 139 VYSDPQPHIQW 149

>pdb|3OJV|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of Fgfr1c Exhibiting An Ordered Ligand Specificity-Determining Betac'-Betae Loop Length = 226

Iteration: 1
 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 46/190 (24%), Positives = 78/190 (41%), Gaps = 22/190 (11%)
Query: 28  FECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVA---LELDDVIETDAGLY 84
           F+C     P+P + W +   +   D R       IG  K   A   + +D V+ +D G Y
Sbjct: 37  FKCPSSGTPQPTLRWLKNGKEFKPDHR-------IGGYKVRYATWSIIMDSVVPSDKGNY 89
Query: 85  KVKAKNKMGEVAASINLNF-SREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQADPAPT 143
               +N+ G +  +  L+   R     +    L  P+ +    G  + F C++ +DP P 
Sbjct: 90  TCIVENEYGSINHTYQLDVVERSPHRPILQAGL--PANKTVALGSNVEFMCKVYSDPQPH 147
Query: 144 VIW-SH---SGVQVKEDKRHKFSIDKDGH-----SYFASLEIIDVTIEDAGKYKVTAKNE 194
           + W  H   +G ++  D      I K             L + +V+ EDAG+Y   A N 
Sbjct: 148 IQWLKHIEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEVLHLRNVSFEDAGEYTCLAGNS 207
Query: 195 LGESNATISL 204
           +G S+ +  L
Sbjct: 208 IGLSHHSAWL 217

>pdb|3OJV|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of Fgfr1c Exhibiting An Ordered Ligand Specificity-Determining Betac'-Betae Loop Length = 226

Iteration: 1
 Score = 40.8 bits (94), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 32/131 (24%), Positives = 53/131 (40%), Gaps = 15/131 (11%)
Query: 127 GKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSY-FASLEII--DVTIED 183
            K + F+C     P PT+ W  +G + K D R        G+   +A+  II   V   D
Sbjct: 32  AKTVKFKCPSSGTPQPTLRWLKNGKEFKPDHR------IGGYKVRYATWSIIMDSVVPSD 85
Query: 184 AGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECR 243
            G Y    +NE G  N T  L+       V     +P+        ++    +++   C+
Sbjct: 86  KGNYTCIVENEYGSINHTYQLDV------VERSPHRPILQAGLPANKTVALGSNVEFMCK 139
Query: 244 LVGEPEPTISW 254
           +  +P+P I W
Sbjct: 140 VYSDPQPHIQW 150

>pdb|1FHG|A Chain A, High Resolution Refinement Of Telokin Length = 154

Iteration: 1
 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 45/94 (47%), Gaps = 3/94 (3%)
Query: 111 LAPTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSY 170
           + P F K     +  +G    F+C+++  P P V+W      VKE +  +   D++G+  
Sbjct: 40  VKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGN-- 97
Query: 171 FASLEIIDVTIEDAGKYKVTAKNELGESNATISL 204
             SL I +V  +D  KY   A N LGE+  T  L
Sbjct: 98  -CSLTISEVCGDDDAKYTCKAVNSLGEATCTAEL 130

>pdb|2YD5|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Lar Length = 214

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 38/142 (26%), Positives = 57/142 (40%), Gaps = 6/142 (4%)
Query: 113 PTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFA 172
           P F+K P  +    G    F C+   +P P + W   G +V   +      D DG     
Sbjct: 7   PVFIKVPEDQTGLSGGVASFVCQATGEPKPRITWMKKGKKVSSQRFEVIEFD-DGAGSVL 65
Query: 173 SLEIIDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSD 232
            ++ + V   D   Y+ TA N LGE N +  L+   ++   PG    P     P  K  +
Sbjct: 66  RIQPLRVQ-RDEAIYECTATNSLGEINTSAKLSVLEEEQLPPG---FPSIDMGPQLKVVE 121
Query: 233 DDLNDIVIECRLVGEPEPTISW 254
                 ++ C   G P+P ISW
Sbjct: 122 KARTATML-CAAGGNPDPEISW 142

>pdb|1TLK|A Chain A, X-Ray Structure Determination Of Telokin, The C-Terminal Domain Of Myosin Light Chain Kinase, At 2.8 Angstroms Resolution Length = 154

Iteration: 1
 Score = 48.5 bits (114), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 3/79 (3%)
Query: 126 DGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAG 185
           +G    F+C+++  P P V+W      VKE +  +   D++G+    SL I +V  +D  
Sbjct: 55  EGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGN---CSLTISEVCGDDDA 111
Query: 186 KYKVTAKNELGESNATISL 204
           KY   A N LGE+  T  L
Sbjct: 112 KYTCKAVNSLGEATCTAEL 130

>pdb|1EVT|C Chain C, Crystal Structure Of Fgf1 In Complex With The Extracellular Ligand Binding Domain Of Fgf Receptor 1 (Fgfr1) Length = 225

Iteration: 1
 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 46/190 (24%), Positives = 77/190 (40%), Gaps = 22/190 (11%)
Query: 28  FECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVA---LELDDVIETDAGLY 84
           F+C     P P + W +   +   D R       IG  K   A   + +D V+ +D G Y
Sbjct: 36  FKCPSSGTPNPTLRWLKNGKEFKPDHR-------IGGYKVRYATWSIIMDSVVPSDKGNY 88
Query: 85  KVKAKNKMGEVAASINLNF-SREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQADPAPT 143
               +N+ G +  +  L+   R     +    L  P+ +    G  + F C++ +DP P 
Sbjct: 89  TCIVENEYGSINHTYQLDVVERSPHRPILQAGL--PANKTVALGSNVEFMCKVYSDPQPH 146
Query: 144 VIW-SH---SGVQVKEDKRHKFSIDKDGH-----SYFASLEIIDVTIEDAGKYKVTAKNE 194
           + W  H   +G ++  D      I K             L + +V+ EDAG+Y   A N 
Sbjct: 147 IQWLKHIEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEVLHLRNVSFEDAGEYTCLAGNS 206
Query: 195 LGESNATISL 204
           +G S+ +  L
Sbjct: 207 IGLSHHSAWL 216

>pdb|1EVT|C Chain C, Crystal Structure Of Fgf1 In Complex With The Extracellular Ligand Binding Domain Of Fgf Receptor 1 (Fgfr1) Length = 225

Iteration: 1
 Score = 40.4 bits (93), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 32/131 (24%), Positives = 53/131 (40%), Gaps = 15/131 (11%)
Query: 127 GKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSY-FASLEII--DVTIED 183
            K + F+C     P PT+ W  +G + K D R        G+   +A+  II   V   D
Sbjct: 31  AKTVKFKCPSSGTPNPTLRWLKNGKEFKPDHR------IGGYKVRYATWSIIMDSVVPSD 84
Query: 184 AGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECR 243
            G Y    +NE G  N T  L+       V     +P+        ++    +++   C+
Sbjct: 85  KGNYTCIVENEYGSINHTYQLDV------VERSPHRPILQAGLPANKTVALGSNVEFMCK 138
Query: 244 LVGEPEPTISW 254
           +  +P+P I W
Sbjct: 139 VYSDPQPHIQW 149

>pdb|1TNM|A Chain A, Tertiary Structure Of An Immunoglobulin-Like Domain From The Muscle Protein Titin: A New Member Of The I Set Length = 100

Iteration: 1
 Score = 48.1 bits (113), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 38/92 (41%), Gaps = 4/92 (4%)
Query: 115 FLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASL 174
            L KP      +G+   F C    +P PTV W   G  +    RH+ +  K    Y ++ 
Sbjct: 11  ILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTK----YKSTF 66
Query: 175 EIIDVTIEDAGKYKVTAKNELGESNATISLNF 206
           EI  V   D G Y V  +N  G+  A  +L  
Sbjct: 67  EISSVQASDEGNYSVVVENSEGKQEAEFTLTI 98

>pdb|2FDB|P Chain P, Crystal Structure Of Fibroblast Growth Factor (Fgf)8b In Complex With Fgf Receptor (Fgfr) 2c Length = 220

Iteration: 1
 Score = 47.8 bits (112), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 53/231 (22%), Positives = 90/231 (38%), Gaps = 42/231 (18%)
Query: 8   APSFTQ----KPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIG 63
           AP +T     + +L      N + F C    NP P + W +   +  ++ R       IG
Sbjct: 5   APYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHR-------IG 57
Query: 64  TNKY---LVALELDDVIETDAGLYKVKAKNKMGEVAASINLNF-SREQIDGLAPTFLKKP 119
             K      +L ++ V+ +D G Y    +N+ G +  + +L+   R +   +    L  P
Sbjct: 58  GYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSRHRPILQAGL--P 115
Query: 120 SIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLE---- 175
           +      G  + F C++ +D  P + W      +K  +++      DG  Y   L+    
Sbjct: 116 ANASTVVGGDVEFVCKVYSDAQPHIQW------IKHVEKNGSKYGPDGLPYLKVLKAAGV 169
Query: 176 -----------IIDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPG 215
                      I +VT EDAG+Y   A N +G S  +  L       P PG
Sbjct: 170 NTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWLTV----LPAPG 216

>pdb|2FDB|P Chain P, Crystal Structure Of Fibroblast Growth Factor (Fgf)8b In Complex With Fgf Receptor (Fgfr) 2c Length = 220

Iteration: 1
 Score = 40.8 bits (94), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 30/123 (24%), Positives = 48/123 (39%), Gaps = 9/123 (7%)
Query: 132 FECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTA 191
           F C    +P PT+ W  +G + K++ R      ++ H    SL +  V   D G Y    
Sbjct: 29  FRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQH---WSLIMESVVPSDKGNYTCVV 85
Query: 192 KNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLVGEPEPT 251
           +NE G  N T  L+       V     +P+         S     D+   C++  + +P 
Sbjct: 86  ENEYGSINHTYHLDV------VERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPH 139
Query: 252 ISW 254
           I W
Sbjct: 140 IQW 142

>pdb|1IIL|E Chain E, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2 (Fgfr2) In Complex With Fgf2 Length = 220

Iteration: 1
 Score = 47.8 bits (112), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 53/231 (22%), Positives = 90/231 (38%), Gaps = 42/231 (18%)
Query: 8   APSFTQ----KPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIG 63
           AP +T     + +L      N + F C    NP P + W +   +  ++ R       IG
Sbjct: 7   APYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHR-------IG 59
Query: 64  TNKY---LVALELDDVIETDAGLYKVKAKNKMGEVAASINLNF-SREQIDGLAPTFLKKP 119
             K      +L ++ V+ +D G Y    +N+ G +  + +L+   R +   +    L  P
Sbjct: 60  GYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSRHRPILQAGL--P 117
Query: 120 SIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLE---- 175
           +      G  + F C++ +D  P + W      +K  +++      DG  Y   L+    
Sbjct: 118 ANASTVVGGDVEFVCKVYSDAQPHIQW------IKHVEKNGSKYGPDGLPYLKVLKAAGV 171
Query: 176 -----------IIDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPG 215
                      I +VT EDAG+Y   A N +G S  +  L       P PG
Sbjct: 172 NTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWLTV----LPAPG 218

>pdb|1IIL|E Chain E, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2 (Fgfr2) In Complex With Fgf2 Length = 220

Iteration: 1
 Score = 40.8 bits (94), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 30/123 (24%), Positives = 48/123 (39%), Gaps = 9/123 (7%)
Query: 132 FECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTA 191
           F C    +P PT+ W  +G + K++ R      ++ H    SL +  V   D G Y    
Sbjct: 31  FRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQH---WSLIMESVVPSDKGNYTCVV 87
Query: 192 KNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLVGEPEPT 251
           +NE G  N T  L+       V     +P+         S     D+   C++  + +P 
Sbjct: 88  ENEYGSINHTYHLDV------VERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPH 141
Query: 252 ISW 254
           I W
Sbjct: 142 IQW 144

>pdb|1KOA|A Chain A, Twitchin Kinase Fragment (C.Elegans), Autoregulated Protein Kinase And Immunoglobulin Domains Length = 491

Iteration: 1
 Score = 47.4 bits (111), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 49/109 (44%), Gaps = 4/109 (3%)
Query: 113 PTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFA 172
           P F+ KP   +  +G+   F CR+ A   P V W     ++K+    K+    +G+ Y  
Sbjct: 377 PRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSV--KYMKRYNGNDY-- 432
Query: 173 SLEIIDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPV 221
            L I  V  +D G+Y V AKN  G     + LN      P+  E  +P+
Sbjct: 433 GLTINRVKGDDKGEYTVRAKNSYGTKEEIVFLNVTRHSEPLKFEPLEPM 481

>pdb|1WWC|A Chain A, Nt3 Binding Domain Of Human Trkc Receptor Length = 118

Iteration: 1
 Score = 47.4 bits (111), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 29/98 (29%), Positives = 47/98 (47%), Gaps = 5/98 (5%)
Query: 116 LKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLE 175
           L++P +R E        E  ++ +P PT+ W H+G  ++E K       ++G      L 
Sbjct: 14  LEEPELRLEH-----CIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLL 68
Query: 176 IIDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPV 213
               T  + G Y + AKN LG +N TI+ +F  +  PV
Sbjct: 69  FNKPTHYNNGNYTLIAKNPLGTANQTINGHFLKEPFPV 106

>pdb|2V5T|A Chain A, Crystal Structure Of Ncam2 Ig2-3 Length = 189

Iteration: 1
 Score = 47.0 bits (110), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 7/87 (8%)
Query: 8   APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKY 67
           A S  QK      + G  + F C+   +P+P I WFR    + E+ + ++K    G+N  
Sbjct: 98  AISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILK----GSN-- 151
Query: 68  LVALELDDVIETDAGLYKVKAKNKMGE 94
              L + ++I +D G Y  +A NK GE
Sbjct: 152 -TELTVRNIINSDGGPYVCRATNKAGE 177

>pdb|1CS6|A Chain A, N-terminal Fragment Of Axonin-1 From Chicken Length = 382

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 49/203 (24%), Positives = 75/203 (36%), Gaps = 26/203 (12%)
Query: 4   AEDFAPSFTQK-PQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPI 62
           A  +APS   K P       G  +  EC    NP P I W + +      T   + + P+
Sbjct: 202 ARQYAPSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLD---GSQTSKWLSSEPL 258
Query: 63  GTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIR 122
                   L + +V   D G Y+ +A+N  G         +    I    P +L   +  
Sbjct: 259 --------LHIQNVDFEDEGTYECEAENIKGRD------TYQGRIIIHAQPDWLDVITDT 304
Query: 123 QEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIE 182
           + D G  L + C     P P V W   G  +    R    I+  G      L    + +E
Sbjct: 305 EADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNR----IEVSG----GELRFSKLVLE 356
Query: 183 DAGKYKVTAKNELGESNATISLN 205
           D+G Y+  A+N+ G   A+  L 
Sbjct: 357 DSGMYQCVAENKHGTVYASAELT 379

>pdb|1E0O|B Chain B, Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin Complex Length = 219

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 53/231 (22%), Positives = 89/231 (38%), Gaps = 42/231 (18%)
Query: 8   APSFTQ----KPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIG 63
           AP +T     + +L      N + F C    NP P + W +   +  ++ R       IG
Sbjct: 6   APYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHR-------IG 58
Query: 64  TNKY---LVALELDDVIETDAGLYKVKAKNKMGEVAASINLNF-SREQIDGLAPTFLKKP 119
             K      +L ++ V+ +D G Y    +N+ G +  + +L+   R     +    L  P
Sbjct: 59  GYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSPHRPILQAGL--P 116
Query: 120 SIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLE---- 175
           +      G  + F C++ +D  P + W      +K  +++      DG  Y   L+    
Sbjct: 117 ANASTVVGGDVEFVCKVYSDAQPHIQW------IKHVEKNGSKYGPDGLPYLKVLKAAGV 170
Query: 176 -----------IIDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPG 215
                      I +VT EDAG+Y   A N +G S  +  L       P PG
Sbjct: 171 NTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWLTV----LPAPG 217

>pdb|1E0O|B Chain B, Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin Complex Length = 219

Iteration: 1
 Score = 40.4 bits (93), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 30/123 (24%), Positives = 48/123 (39%), Gaps = 9/123 (7%)
Query: 132 FECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTA 191
           F C    +P PT+ W  +G + K++ R      ++ H    SL +  V   D G Y    
Sbjct: 30  FRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQH---WSLIMESVVPSDKGNYTCVV 86
Query: 192 KNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLVGEPEPT 251
           +NE G  N T  L+       V     +P+         S     D+   C++  + +P 
Sbjct: 87  ENEYGSINHTYHLDV------VERSPHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPH 140
Query: 252 ISW 254
           I W
Sbjct: 141 IQW 143

>pdb|3OJM|B Chain B, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of Fgfr2b Harboring P253r Apert Mutation Length = 231

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 51/232 (21%), Positives = 92/232 (39%), Gaps = 45/232 (19%)
Query: 3   IAEDF---------APSFTQ----KPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQL 49
           +AEDF         AP +T     + +L      N + F C    NP P + W +   + 
Sbjct: 1   MAEDFVSENSNNKRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEF 60
Query: 50  SEDTRTVMKTTPIGTNKY---LVALELDDVIETDAGLYKVKAKNKMGEVAASINLN-FSR 105
            ++ R       IG  K      +L ++ V+ +D G Y    +N+ G +  + +L+   R
Sbjct: 61  KQEHR-------IGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVER 113
Query: 106 EQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDK 165
            +   +    L  P+      G  + F C++ +D  P + W      +K  +++      
Sbjct: 114 SRHRPILQAGL--PANASTVVGGDVEFVCKVYSDAQPHIQW------IKHVEKNGSKYGP 165
Query: 166 DGHSYFASLE-------------IIDVTIEDAGKYKVTAKNELGESNATISL 204
           DG  Y   L+             + +VT  DAG+Y     N +G++N +  L
Sbjct: 166 DGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQANQSAWL 217

>pdb|3OJM|B Chain B, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of Fgfr2b Harboring P253r Apert Mutation Length = 231

Iteration: 1
 Score = 40.8 bits (94), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 30/123 (24%), Positives = 48/123 (39%), Gaps = 9/123 (7%)
Query: 132 FECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTA 191
           F C    +P PT+ W  +G + K++ R      ++ H    SL +  V   D G Y    
Sbjct: 39  FRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQH---WSLIMESVVPSDKGNYTCVV 95
Query: 192 KNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLVGEPEPT 251
           +NE G  N T  L+       V     +P+         S     D+   C++  + +P 
Sbjct: 96  ENEYGSINHTYHLDV------VERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPH 149
Query: 252 ISW 254
           I W
Sbjct: 150 IQW 152

>pdb|2WIM|A Chain A, Crystal Structure Of Ncam2 Ig1-3 Length = 291

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 7/87 (8%)
Query: 8   APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKY 67
           A S  QK      + G  + F C+   +P+P I WFR    + E+ + ++K    G+N  
Sbjct: 194 AISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILK----GSN-- 247
Query: 68  LVALELDDVIETDAGLYKVKAKNKMGE 94
              L + ++I +D G Y  +A NK GE
Sbjct: 248 -TELTVRNIINSDGGPYVCRATNKAGE 273

>pdb|1EV2|E Chain E, Crystal Structure Of Fgf2 In Complex With The Extracellular Ligand Binding Domain Of Fgf Receptor 2 (Fgfr2) Length = 220

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 53/231 (22%), Positives = 89/231 (38%), Gaps = 42/231 (18%)
Query: 8   APSFTQ----KPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIG 63
           AP +T     + +L      N + F C    NP P + W +   +  ++ R       IG
Sbjct: 7   APYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHR-------IG 59
Query: 64  TNKY---LVALELDDVIETDAGLYKVKAKNKMGEVAASINLNF-SREQIDGLAPTFLKKP 119
             K      +L ++ V+ +D G Y    +N+ G +  + +L+   R     +    L  P
Sbjct: 60  GYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSPHRPILQAGL--P 117
Query: 120 SIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLE---- 175
           +      G  + F C++ +D  P + W      +K  +++      DG  Y   L+    
Sbjct: 118 ANASTVVGGDVEFVCKVYSDAQPHIQW------IKHVEKNGSKYGPDGLPYLKVLKAAGV 171
Query: 176 -----------IIDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPG 215
                      I +VT EDAG+Y   A N +G S  +  L       P PG
Sbjct: 172 NTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWLTV----LPAPG 218

>pdb|1EV2|E Chain E, Crystal Structure Of Fgf2 In Complex With The Extracellular Ligand Binding Domain Of Fgf Receptor 2 (Fgfr2) Length = 220

Iteration: 1
 Score = 40.4 bits (93), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 30/123 (24%), Positives = 48/123 (39%), Gaps = 9/123 (7%)
Query: 132 FECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTA 191
           F C    +P PT+ W  +G + K++ R      ++ H    SL +  V   D G Y    
Sbjct: 31  FRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQH---WSLIMESVVPSDKGNYTCVV 87
Query: 192 KNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLVGEPEPT 251
           +NE G  N T  L+       V     +P+         S     D+   C++  + +P 
Sbjct: 88  ENEYGSINHTYHLDV------VERSPHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPH 141
Query: 252 ISW 254
           I W
Sbjct: 142 IQW 144

>pdb|1II4|E Chain E, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2 (Fgfr2) In Complex With Fgf2 Length = 220

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 52/230 (22%), Positives = 88/230 (38%), Gaps = 40/230 (17%)
Query: 8   APSFTQ----KPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIG 63
           AP +T     + +L      N + F C    NP P + W +   +  ++ R       IG
Sbjct: 7   APYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHR-------IG 59
Query: 64  TNKY---LVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPS 120
             K      +L ++ V+ +D G Y    +N+ G +  + +L+   E+           P+
Sbjct: 60  GYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVV-ERWPHRPILQAGLPA 118
Query: 121 IRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLE----- 175
                 G  + F C++ +D  P + W      +K  +++      DG  Y   L+     
Sbjct: 119 NASTVVGGDVEFVCKVYSDAQPHIQW------IKHVEKNGSKYGPDGLPYLKVLKAAGVN 172
Query: 176 ----------IIDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPG 215
                     I +VT EDAG+Y   A N +G S  +  L       P PG
Sbjct: 173 TTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWLTV----LPAPG 218

>pdb|2VRA|A Chain A, Drosophila Robo Ig1-2 (Monoclinic Form) Length = 208

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/182 (24%), Positives = 73/182 (40%), Gaps = 15/182 (8%)
Query: 28  FECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVK 87
             C++   P+P I WF+    +S + +   +              +    E D G Y   
Sbjct: 29  LNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQ-FKDGALFFYRTMQGKKEQDGGEYWCV 87
Query: 88  AKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRI-QADPAPTVIW 146
           AKN++G+  +      +  QI  L   F  +P   +   G+  L EC   +  P PT+IW
Sbjct: 88  AKNRVGQAVS----RHASLQIAVLRDDFRVEPKDTRVAKGETALLECGPPKGIPEPTLIW 143
Query: 147 SHSGVQVKEDKRHKFSIDK-----DGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNAT 201
              GV + + K   F         DG     +L I +V   D G YK  A+N +G   ++
Sbjct: 144 IKDGVPLDDLKAMSFGASSRVRIVDG----GNLLISNVEPIDEGNYKCIAQNLVGTRESS 199
Query: 202 IS 203
            +
Sbjct: 200 YA 201

>pdb|2VR9|A Chain A, Drosophila Robo Ig1-2 (Tetragonal Form) Length = 217

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/182 (24%), Positives = 73/182 (40%), Gaps = 15/182 (8%)
Query: 28  FECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVK 87
             C++   P+P I WF+    +S + +   +              +    E D G Y   
Sbjct: 29  LNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQ-FKDGALFFYRTMQGKKEQDGGEYWCV 87
Query: 88  AKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRI-QADPAPTVIW 146
           AKN++G+  +      +  QI  L   F  +P   +   G+  L EC   +  P PT+IW
Sbjct: 88  AKNRVGQAVS----RHASLQIAVLRDDFRVEPKDTRVAKGETALLECGPPKGIPEPTLIW 143
Query: 147 SHSGVQVKEDKRHKFSIDK-----DGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNAT 201
              GV + + K   F         DG     +L I +V   D G YK  A+N +G   ++
Sbjct: 144 IKDGVPLDDLKAMSFGASSRVRIVDG----GNLLISNVEPIDEGNYKCIAQNLVGTRESS 199
Query: 202 IS 203
            +
Sbjct: 200 YA 201

>pdb|3OJ2|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of Fgfr2b Harboring The A172f Pfeiffer Syndrome Mutation Length = 231

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 50/232 (21%), Positives = 91/232 (39%), Gaps = 45/232 (19%)
Query: 3   IAEDF---------APSFTQKPQLRQEDEG----NRLIFECQLLCNPKPDIVWFRGETQL 49
           +AEDF         AP +T   ++ +        N + F C    NP P + W +   + 
Sbjct: 1   MAEDFVSENSNNKRAPYWTNTEKMEKRLHAVPAFNTVKFRCPAGGNPMPTMRWLKNGKEF 60
Query: 50  SEDTRTVMKTTPIGTNKY---LVALELDDVIETDAGLYKVKAKNKMGEVAASINLN-FSR 105
            ++ R       IG  K      +L ++ V+ +D G Y    +N+ G +  + +L+   R
Sbjct: 61  KQEHR-------IGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVER 113
Query: 106 EQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDK 165
                +    L  P+      G  + F C++ +D  P + W      +K  +++      
Sbjct: 114 SPHRPILQAGL--PANASTVVGGDVEFVCKVYSDAQPHIQW------IKHVEKNGSKYGP 165
Query: 166 DGHSYFASLE-------------IIDVTIEDAGKYKVTAKNELGESNATISL 204
           DG  Y   L+             + +VT  DAG+Y     N +G++N +  L
Sbjct: 166 DGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQANQSAWL 217

>pdb|3OJ2|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of Fgfr2b Harboring The A172f Pfeiffer Syndrome Mutation Length = 231

Iteration: 1
 Score = 40.8 bits (94), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 30/123 (24%), Positives = 48/123 (39%), Gaps = 9/123 (7%)
Query: 132 FECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTA 191
           F C    +P PT+ W  +G + K++ R      ++ H    SL +  V   D G Y    
Sbjct: 39  FRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQH---WSLIMESVVPSDKGNYTCVV 95
Query: 192 KNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLVGEPEPT 251
           +NE G  N T  L+       V     +P+         S     D+   C++  + +P 
Sbjct: 96  ENEYGSINHTYHLDV------VERSPHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPH 149
Query: 252 ISW 254
           I W
Sbjct: 150 IQW 152

>pdb|2WWK|O Chain O, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig F17r Mutant Complex Length = 109

Iteration: 1
 Score = 45.1 bits (105), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 24/85 (28%), Positives = 35/85 (41%), Gaps = 4/85 (4%)
Query: 109 DGLAPTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGH 168
            G  P FL++P   +   G     +C +  +P P V+W   G Q+   +R  F  D   H
Sbjct: 11  QGSPPCFLRRPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEH 70
Query: 169 SYFASLEIIDVTIEDAGKYKVTAKN 193
                L +      DAG Y   A+N
Sbjct: 71  ----GLLLTAALPTDAGVYVCRARN 91

>pdb|2YD3|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Sigma Length = 202

Iteration: 1
 Score = 44.7 bits (104), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 45/199 (22%), Positives = 73/199 (36%), Gaps = 28/199 (14%)
Query: 9   PSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWF---------RGET-QLSEDTRTVMK 58
           P F ++P+ +    G    F CQ   +PKP + W          R ET +  E    V++
Sbjct: 7   PRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLR 66
Query: 59  TTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSRE-QIDGLAPTFLK 117
             P+ T +             D  +Y+  A+N +GE+     L   RE Q+    P    
Sbjct: 67  IQPLRTPR-------------DENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDM 113
Query: 118 KPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEII 177
            P ++  +  +     C    +P P + W    + V        S  +       +L+I 
Sbjct: 114 GPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDPSA----SNGRIKQLRSGALQIE 169
Query: 178 DVTIEDAGKYKVTAKNELG 196
                D GKY+  A N  G
Sbjct: 170 SSEETDQGKYECVATNSAG 188

>pdb|2YD3|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Sigma Length = 202

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 38/143 (26%), Positives = 55/143 (38%), Gaps = 8/143 (5%)
Query: 113 PTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFA 172
           P F+K+P  +    G    F C+   DP P V W+  G +V   +      D    S  A
Sbjct: 7   PRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFD---ESAGA 63
Query: 173 SLEIIDV-TIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQS 231
            L I  + T  D   Y+  A+N +GE      L    +D    G    P     P  K  
Sbjct: 64  VLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSG---FPNIDMGPQLKVV 120
Query: 232 DDDLNDIVIECRLVGEPEPTISW 254
           +      ++ C   G P+P I+W
Sbjct: 121 ERTRTATML-CAASGNPDPEITW 142

>pdb|2YD4|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Chicken Receptor Protein Tyrosine Phosphatase Sigma Length = 210

Iteration: 1
 Score = 44.7 bits (104), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 40/143 (27%), Positives = 56/143 (39%), Gaps = 8/143 (5%)
Query: 113 PTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFA 172
           P F+KKP  +    G    F C+   DP P V W+  G +V   +      D+   S  A
Sbjct: 7   PVFIKKPVDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDE---SAGA 63
Query: 173 SLEIIDV-TIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQS 231
            L I  + T  D   Y+  A+N  GE      L    +D   PG    P     P  K  
Sbjct: 64  VLRIQPLRTPRDENIYECVAQNPHGEVTVHAKLTVLREDQLPPG---FPNIDMGPQLKVV 120
Query: 232 DDDLNDIVIECRLVGEPEPTISW 254
           +      ++ C   G P+P I+W
Sbjct: 121 ERTRTATML-CAASGNPDPEITW 142

>pdb|3LCY|A Chain A, Titin Ig Tandem Domains A164-A165 Length = 197

Iteration: 1
 Score = 44.7 bits (104), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 33/143 (23%), Positives = 58/143 (40%), Gaps = 20/143 (13%)
Query: 119 PSIRQEDD------GKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFA 172
           P IR+E        G+     C+I   P P + W   G ++ + +++K S D   H    
Sbjct: 8   PGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTH---- 63
Query: 173 SLEIIDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSD 232
           +L ++    ED G Y   A NE+GE   +  L   +     PG          P+ ++  
Sbjct: 64  TLTVMTEEQEDEGVYTCIATNEVGEVETSSKLLLQATPQFHPG---------YPLKEKYY 114
Query: 233 DDLNDIV-IECRLVGEPEPTISW 254
             +   + +    +G P P ++W
Sbjct: 115 GAVGSTLRLHVMYIGRPVPAMTW 137

>pdb|3UTO|A Chain A, Twitchin Kinase Region From C.Elegans (Fn31-Nl-Kin-Crd-Ig26) Length = 573

Iteration: 1
 Score = 44.3 bits (103), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 43/93 (46%), Gaps = 4/93 (4%)
Query: 113 PTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFA 172
           P F+ KP   +  +G+   F CR+ A   P V W     ++K+    K+    +G+ Y  
Sbjct: 483 PRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSV--KYMKRYNGNDY-- 538
Query: 173 SLEIIDVTIEDAGKYKVTAKNELGESNATISLN 205
            L I  V  +D G+Y V AKN  G     + LN
Sbjct: 539 GLTINRVKGDDKGEYTVRAKNSYGTKEEIVFLN 571

>pdb|3PUC|A Chain A, Atomic Resolution Structure Of Titin Domain M7 Length = 99

Iteration: 1
 Score = 44.3 bits (103), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 4/75 (5%)
Query: 132 FECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTA 191
           F  +   +P PT IW+  G  + +  ++K S DK G  +F  LEI      D+G Y  T 
Sbjct: 26  FAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGG--FF--LEIHKTDTSDSGLYTCTV 81
Query: 192 KNELGESNATISLNF 206
           KN  G  +++  L  
Sbjct: 82  KNSAGSVSSSCKLTI 96

>pdb|2YD2|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Sigma Length = 214

Iteration: 1
 Score = 44.3 bits (103), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 45/199 (22%), Positives = 73/199 (36%), Gaps = 28/199 (14%)
Query: 9   PSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWF---------RGET-QLSEDTRTVMK 58
           P F ++P+ +    G    F CQ   +PKP + W          R ET +  E    V++
Sbjct: 7   PRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLR 66
Query: 59  TTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSRE-QIDGLAPTFLK 117
             P+ T +             D  +Y+  A+N +GE+     L   RE Q+    P    
Sbjct: 67  IQPLRTPR-------------DENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDM 113
Query: 118 KPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEII 177
            P ++  +  +     C    +P P + W    + V        S  +       +L+I 
Sbjct: 114 GPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDPSA----SNGRIKQLRSGALQIE 169
Query: 178 DVTIEDAGKYKVTAKNELG 196
                D GKY+  A N  G
Sbjct: 170 SSEETDQGKYECVATNSAG 188

>pdb|2YD2|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Sigma Length = 214

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 38/143 (26%), Positives = 55/143 (38%), Gaps = 8/143 (5%)
Query: 113 PTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFA 172
           P F+K+P  +    G    F C+   DP P V W+  G +V   +      D    S  A
Sbjct: 7   PRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFD---ESAGA 63
Query: 173 SLEIIDV-TIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQS 231
            L I  + T  D   Y+  A+N +GE      L    +D    G    P     P  K  
Sbjct: 64  VLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSG---FPNIDMGPQLKVV 120
Query: 232 DDDLNDIVIECRLVGEPEPTISW 254
           +      ++ C   G P+P I+W
Sbjct: 121 ERTRTATML-CAASGNPDPEITW 142

>pdb|3QP3|A Chain A, Crystal Structure Of Titin Domain M4, Tetragonal Form Length = 103

Iteration: 1
 Score = 44.3 bits (103), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 4/84 (4%)
Query: 127 GKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGK 186
           G+   F   +Q+ P   V W H+GV+++E  +    I     S   +LEI+D   +D+G 
Sbjct: 23  GQNTRFILNVQSKPTAEVKWYHNGVELQESSK----IHYTNTSGVLTLEILDCHTDDSGT 78
Query: 187 YKVTAKNELGESNATISLNFDSDD 210
           Y+    N  GE++   +L+    D
Sbjct: 79  YRAVCTNYKGEASDYATLDVTGGD 102

>pdb|1DJS|A Chain A, Ligand-binding Portion Of Fibroblast Growth Factor Receptor 2 In Complex With Fgf1 Length = 216

Iteration: 1
 Score = 44.3 bits (103), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 49/214 (22%), Positives = 82/214 (38%), Gaps = 38/214 (17%)
Query: 8   APSFTQ----KPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIG 63
           AP +T     + +L      N + F C    NP P   W +   +  ++ R       IG
Sbjct: 7   APYWTNTEKXEKRLHAVPAANTVKFRCPAGGNPXPTXRWLKNGKEFKQEHR-------IG 59
Query: 64  TNKY---LVALELDDVIETDAGLYKVKAKNKMGEVAASINLNF-SREQIDGLAPTFLKKP 119
             K      +L  + V+ +D G Y    +N+ G +  + +L+   R     +    L  P
Sbjct: 60  GYKVRNQHWSLIXESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSPHRPILQAGL--P 117
Query: 120 SIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLE---- 175
           +      G  + F C++ +D  P + W      +K  +++      DG  Y   L+    
Sbjct: 118 ANASTVVGGDVEFVCKVYSDAQPHIQW------IKHVEKNGSKYGPDGLPYLKVLKAAGV 171
Query: 176 -----------IIDVTIEDAGKYKVTAKNELGES 198
                      I +VT EDAG+Y   A N +G S
Sbjct: 172 NTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGIS 205

>pdb|2LQR|A Chain A, Nmr Structure Of Ig3 Domain Of Palladin Length = 108

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/102 (30%), Positives = 46/102 (45%), Gaps = 7/102 (6%)
Query: 2   GIAEDFAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLS--EDTRTVMKT 59
           G +   AP F  K +  +  EG  + F C++  NPKP I WF+   Q+S   D  T+ + 
Sbjct: 1   GGSNATAPFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRD 60
Query: 60  TPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINL 101
                + +  A  LD     D G Y + A N  G V+ +  L
Sbjct: 61  LDGTCSLHTTASTLD-----DDGNYTIMAANPQGRVSCTGRL 97

>pdb|2LQR|A Chain A, Nmr Structure Of Ig3 Domain Of Palladin Length = 108

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 42/96 (43%), Gaps = 2/96 (2%)
Query: 109 DGLAPTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGH 168
           +  AP F  K    +  +G  + F CR+  +P P + W   G Q+     H ++I +D  
Sbjct: 4   NATAPFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDH-YTIQRDLD 62
Query: 169 SYFASLEIIDVTIEDAGKYKVTAKNELGESNATISL 204
               SL     T++D G Y + A N  G  + T  L
Sbjct: 63  GT-CSLHTTASTLDDDGNYTIMAANPQGRVSCTGRL 97

>pdb|3GRW|A Chain A, Fgfr3 In Complex With A Fab Length = 241

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 45/210 (21%), Positives = 76/210 (36%), Gaps = 39/210 (18%)
Query: 23  GNRLIFECQLLCNPKPDIVW------FRGETQLSEDTRTVMKTTPIGTNKYLVALELDDV 76
            N + F C    NP P I W      FRGE ++            I       +L ++ V
Sbjct: 30  ANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGG----------IKLRHQQWSLVMESV 79
Query: 77  IETDAGLYKVKAKNKMGEVAASINLN-FSREQIDGLAPTFLKKPSIRQEDDGKRLLFECR 135
           + +D G Y    +NK G +  +  L+   R     +    L  P+ +    G  + F C+
Sbjct: 80  VPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGL--PANQTAVLGSDVEFHCK 137
Query: 136 IQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYF--------------ASLEIIDVTI 181
           + +D  P + W      +K  + +   +  DG  Y                 L + +V+ 
Sbjct: 138 VYSDAQPHIQW------LKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRLANVSE 191
Query: 182 EDAGKYKVTAKNELGESNATISLNFDSDDA 211
            D G+Y   A N +G +     L+     A
Sbjct: 192 RDGGEYLCRATNFIGVAEKAFWLSVHGPRA 221

>pdb|3KNB|B Chain B, Crystal Structure Of The Titin C-Terminus In Complex With Obscurin- Like 1 Length = 107

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/85 (28%), Positives = 34/85 (40%), Gaps = 4/85 (4%)
Query: 109 DGLAPTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGH 168
            G  P FL+ P   +   G     +C +  +P P V+W   G Q+   +R  F  D   H
Sbjct: 10  QGSPPCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEH 69
Query: 169 SYFASLEIIDVTIEDAGKYKVTAKN 193
                L +      DAG Y   A+N
Sbjct: 70  ----GLLLTAALPTDAGVYVCRARN 90

>pdb|2DM2|A Chain A, Solution Structure Of The First Ig Domain Of Human Palladin Length = 110

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/96 (30%), Positives = 44/96 (45%), Gaps = 7/96 (7%)
Query: 8   APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLS--EDTRTVMKTTPIGTN 65
           AP F  K +  +  EG  + F C++  NPKP I WF+   Q+S   D  T+ +      +
Sbjct: 8   APFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCS 67
Query: 66  KYLVALELDDVIETDAGLYKVKAKNKMGEVAASINL 101
            +  A  LD     D G Y + A N  G ++ +  L
Sbjct: 68  LHTTASTLD-----DDGNYTIMAANPQGRISCTGRL 98

>pdb|2DM2|A Chain A, Solution Structure Of The First Ig Domain Of Human Palladin Length = 110

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/93 (29%), Positives = 41/93 (44%), Gaps = 2/93 (2%)
Query: 112 APTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYF 171
           AP F  K    +  +G  + F CR+  +P P + W   G Q+     H ++I +D     
Sbjct: 8   APFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDH-YTIQRDLDGT- 65
Query: 172 ASLEIIDVTIEDAGKYKVTAKNELGESNATISL 204
            SL     T++D G Y + A N  G  + T  L
Sbjct: 66  CSLHTTASTLDDDGNYTIMAANPQGRISCTGRL 98

>pdb|2WP3|O Chain O, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig Complex Length = 109

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/85 (28%), Positives = 34/85 (40%), Gaps = 4/85 (4%)
Query: 109 DGLAPTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGH 168
            G  P FL+ P   +   G     +C +  +P P V+W   G Q+   +R  F  D   H
Sbjct: 11  QGSPPCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEH 70
Query: 169 SYFASLEIIDVTIEDAGKYKVTAKN 193
                L +      DAG Y   A+N
Sbjct: 71  ----GLLLTAALPTDAGVYVCRARN 91

>pdb|1NUN|B Chain B, Crystal Structure Analysis Of The Fgf10-fgfr2b Complex Length = 230

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 51/231 (22%), Positives = 88/231 (38%), Gaps = 45/231 (19%)
Query: 4   AEDF---------APSFTQ----KPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLS 50
           AEDF         AP +T     + +L      N + F C    NP P   W +   +  
Sbjct: 1   AEDFVSENSNNKRAPYWTNTEKXEKRLHAVPAANTVKFRCPAGGNPXPTXRWLKNGKEFK 60
Query: 51  EDTRTVMKTTPIGTNKY---LVALELDDVIETDAGLYKVKAKNKMGEVAASINLN-FSRE 106
           ++ R       IG  K      +L  + V+ +D G Y    +N+ G +  + +L+   R 
Sbjct: 61  QEHR-------IGGYKVRNQHWSLIXESVVPSDKGNYTCVVENEYGSINHTYHLDVVERS 113
Query: 107 QIDGLAPTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKD 166
               +    L  P+      G  + F C++ +D  P + W      +K  +++      D
Sbjct: 114 PHRPILQAGL--PANASTVVGGDVEFVCKVYSDAQPHIQW------IKHVEKNGSKYGPD 165
Query: 167 GHSYFASLE-------------IIDVTIEDAGKYKVTAKNELGESNATISL 204
           G  Y   L+             + +VT  DAG+Y     N +G++N +  L
Sbjct: 166 GLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQANQSAWL 216

>pdb|1U2H|A Chain A, X-Ray Structure Of The N-Terminally Truncated Human Apep-1 Length = 99

Iteration: 1
 Score = 40.4 bits (93), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 29/100 (29%), Positives = 45/100 (45%), Gaps = 9/100 (9%)
Query: 113 PTF---LKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHS 169
           PTF   L   S+R   +G+ ++   R+Q +P P V W  +   V+ D+R +F+ + +G  
Sbjct: 6   PTFKVSLMDQSVR---EGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQR-RFAEEAEGG- 60
Query: 170 YFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFDSD 209
               L I+     DAG Y   A NE G       L    +
Sbjct: 61  -LCRLRILAAERGDAGFYTCKAVNEYGARQCEARLEVRGE 99

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	254
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	5e-56
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	1e-46
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	5e-56
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	1e-52
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	4e-47
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	4e-39
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	3e-53
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	6e-35
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	3e-17
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	6e-49
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	2e-39
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	3e-17
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	4e-47
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	1e-34
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	5e-18
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	3e-45
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	5e-35
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	4e-14
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	3e-44
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	5e-33
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	1e-43
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	2e-33
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	5e-24
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	4e-43
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	1e-41
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	3e-41
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	2e-40
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	4e-38
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	1e-35
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	1e-29
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	4e-24
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	1e-12
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	7e-41
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	1e-37
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	5e-11
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	1e-40
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	1e-35
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	9e-35
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	3e-20
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	5e-40
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	2e-23
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	6e-18
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	7e-40
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	7e-26
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	2e-39
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	2e-34
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	3e-39
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	2e-26
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	3e-39
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	2e-28
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	5e-13
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	2e-38
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	5e-32
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	9e-32
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	2e-37
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	3e-24
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	2e-37
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	1e-31
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	3e-31
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	1e-15
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	4e-37
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	4e-25
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	2e-12
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	1e-36
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	9e-31
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	7e-30
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	5e-36
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	3e-25
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	7e-36
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	2e-24
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	2e-35
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	3e-30
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	2e-35
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	1e-25
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	5e-35
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	2e-32
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	3e-28
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	1e-34
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	7e-24
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	4e-34
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	1e-28
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	6e-16
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	2e-11
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	4e-34
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	3e-21
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	4e-11
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	6e-34
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	1e-18
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	5e-16
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	9e-34
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	2e-25
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	1e-33
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	7e-33
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	2e-31
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	3e-30
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	3e-30
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	4e-23
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	2e-14
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	3e-33
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	2e-29
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	3e-27
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	2e-32
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	8e-26
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	3e-24
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	2e-20
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	1e-31
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	4e-21
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	3e-31
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	2e-20
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	4e-31
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	3e-21
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	3e-30
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	1e-26
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	4e-30
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	2e-22
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	6e-06
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	1e-29
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	1e-17
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	3e-13
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	6e-29
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	3e-28
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	9e-27
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	4e-20
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	2e-28
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	1e-26
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	6e-26
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	4e-24
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	1e-23
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	2e-28
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	5e-19
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	6e-04
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	4e-28
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	7e-20
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	8e-04
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	4e-28
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	5e-22
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	1e-27
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	2e-15
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	5e-12
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	2e-27
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	8e-19
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	6e-27
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	5e-16
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	8e-27
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	1e-17
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	9e-05
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	9e-27
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	6e-20
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	3e-07
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	1e-26
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	1e-16
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	7e-11
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	1e-26
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	1e-19
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	2e-26
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	1e-14
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	5e-25
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	1e-16
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	7e-07
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	5e-25
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	9e-17
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	2e-09
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	8e-25
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	3e-20
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	2e-24
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	2e-18
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	2e-24
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	3e-20
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	2e-24
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	4e-19
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	3e-24
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	9e-18
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	2e-04
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	7e-24
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	1e-17
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	5e-04
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	7e-24
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	3e-19
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	9e-24
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	3e-19
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	1e-23
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	2e-18
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	1e-23
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	4e-19
1he7_A	126	High affinity nerve growth factor receptor; transf	1e-22
1he7_A	126	High affinity nerve growth factor receptor; transf	3e-14
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	3e-22
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	8e-18
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	1e-21
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	6e-19
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	3e-14
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	1e-07
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	2e-21
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	4e-17
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	7e-21
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	8e-08
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	8e-21
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	4e-18
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	1e-20
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	1e-15
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	2e-20
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	2e-16
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	5e-20
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	6e-09
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	2e-08
3qr2_A	137	Basigin; CD147, EMMPRIN, immunoglobulin-like domai	6e-20
3qr2_A	137	Basigin; CD147, EMMPRIN, immunoglobulin-like domai	3e-16
3qr2_A	137	Basigin; CD147, EMMPRIN, immunoglobulin-like domai	4e-06
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	1e-19
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	2e-15
2ch8_A	201	BARF1, P33, 33 kDa early protein; viral protein, i	1e-19
2ch8_A	201	BARF1, P33, 33 kDa early protein; viral protein, i	3e-12
2ch8_A	201	BARF1, P33, 33 kDa early protein; viral protein, i	2e-09
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	3e-19
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	3e-11
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	3e-19
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	1e-13
1nn8_R	302	CD155 antigen, poliovirus receptor; icosahedral vi	5e-19
1nn8_R	302	CD155 antigen, poliovirus receptor; icosahedral vi	6e-15
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	6e-19
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	1e-08
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	1e-18
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	4e-16
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	2e-18
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	5e-14
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	2e-18
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	5e-14
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	2e-04
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	2e-18
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	2e-09
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	6e-09
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	4e-18
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	1e-13
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	2e-08
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	5e-18
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	1e-08
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	5e-18
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	2e-14
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	7e-18
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	6e-16
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	2e-06
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	9e-18
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	2e-13
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	1e-04
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	1e-17
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	1e-10
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	1e-17
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	8e-13
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	2e-17
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	2e-13
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	2e-17
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	2e-15
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	3e-17
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	3e-11
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	4e-17
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	1e-12
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	5e-17
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	8e-10
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	1e-06
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	8e-17
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	8e-17
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	4e-12
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	3e-04
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	1e-16
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	7e-07
2dku_A	103	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	3e-16
2dku_A	103	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	7e-12
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	4e-16
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	4e-13
2dm7_A	108	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	7e-16
2dm7_A	108	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	4e-12
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	7e-16
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	1e-10
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	8e-16
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	3e-10
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	8e-16
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	1e-04
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	9e-16
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	8e-12
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	9e-16
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	2e-09
2e7b_A	103	Obscurin; IG-like domain, structural genomics, NPP	1e-15
2e7b_A	103	Obscurin; IG-like domain, structural genomics, NPP	3e-09
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	2e-15
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	1e-10
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	2e-10
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	3e-15
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	1e-11
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	3e-15
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	3e-05
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	6e-15
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	1e-12
1pd6_A	104	Cardiac MYBP-C;, myosin-binding protein C, cardiac	7e-15
1pd6_A	104	Cardiac MYBP-C;, myosin-binding protein C, cardiac	5e-10
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	7e-15
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	3e-09
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	7e-15
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	2e-10
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	1e-14
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	7e-10
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	2e-14
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	4e-10
2eo1_A	102	OBSCN protein, cDNA FLJ14124 FIS, clone mamma10024	3e-14
2eo1_A	102	OBSCN protein, cDNA FLJ14124 FIS, clone mamma10024	6e-09
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	3e-14
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	3e-09
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	4e-14
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	8e-12
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	4e-14
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	1e-05
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	1e-13
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	5e-07
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	1e-13
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	7e-09
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	2e-13
2ens_A	96	Advanced glycosylation END product-specific recept	2e-13
2ens_A	96	Advanced glycosylation END product-specific recept	2e-11
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	2e-13
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	3e-04
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	2e-13
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	2e-04
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	7e-13
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	2e-07
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	1e-12
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-12
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	5e-08
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	3e-12
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	2e-11
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	5e-12
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	1e-08
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	6e-12
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	1e-08
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	6e-12
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	9e-12
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-11
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-07
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-11
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-07
3so5_A	112	LIG-3, leucine-rich repeats and immunoglobulin-lik	1e-10
3so5_A	112	LIG-3, leucine-rich repeats and immunoglobulin-lik	1e-09
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	2e-10
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	1e-06
2edn_A	118	Myosin-binding protein C, fast-type; beta-sandwich	2e-10
2edn_A	118	Myosin-binding protein C, fast-type; beta-sandwich	6e-10
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-10
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-06
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	1e-09
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	3e-09
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	4e-06
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	5e-09
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	3e-07
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	1e-08
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	6e-07
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	5e-08
1mq8_A	291	ICAM-1, intercellular adhesion molecule-1, CD54 an	5e-07
3m45_A	108	Cell adhesion molecule 2; IG fold, dimer, disulfid	1e-06
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	3e-06
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	6e-06
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	4e-06
3rbg_A	124	Cytotoxic and regulatory T-cell molecule; IGV, crt	5e-06
2zg1_A	214	Sialic acid-binding IG-like lectin 5; siglec-5 inh	1e-05
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	2e-05
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	2e-05
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	3e-05
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	3e-05
1qfo_A	119	Protein (sialoadhesin); immunoglobulin superfamily	2e-04
2e6q_A	112	Obscurin-like protein 1; IG-like domain, structura	4e-04
1nko_A	132	Sialic acid binding IG-like lectin 7; immunoglobul	6e-04

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score =  179 bits (457), Expect = 5e-56
 Identities = 56/248 (22%), Positives = 94/248 (37%), Gaps = 27/248 (10%)

Query: 8   APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKY 67
            P F  KP       G    F+C +       I W +   ++       M          
Sbjct: 5   PPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTA--- 61

Query: 68  LVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQE-DD 126
              L +  V + DAG Y   A N  G+ + S  L           P F+KK    +    
Sbjct: 62  --TLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQE------PPRFIKKLEPSRIVKQ 113

Query: 127 GKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGK 186
            +   +EC+I   P   V+W     +++E  + + S  +        LE+ ++++ED+G 
Sbjct: 114 DEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVA----VLEMYNLSVEDSGD 169

Query: 187 YKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLVG 246
           Y   A N  G ++++ SL               PVF ++P   ++     D+ +EC L G
Sbjct: 170 YTCEAHNAAGSASSSTSLKVKE----------PPVFRKKPHPVETLKG-ADVHLECELQG 218

Query: 247 EPEPTISW 254
            P   +SW
Sbjct: 219 TPPFQVSW 226

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score =  155 bits (394), Expect = 1e-46
 Identities = 46/200 (23%), Positives = 88/200 (44%), Gaps = 18/200 (9%)

Query: 8   APSFTQKPQ-LRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTP-IGTN 65
            P F +K +  R   +     +EC++  +P+  ++W++ ET++ E ++  M     +   
Sbjct: 98  PPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAV- 156

Query: 66  KYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQED 125
                LE+ ++   D+G Y  +A N  G  ++S +L           P F KKP   +  
Sbjct: 157 -----LEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKE------PPVFRKKPHPVETL 205

Query: 126 DGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAG 185
            G  +  EC +Q  P   V W     +++  K++K   +        S+ I++V   D G
Sbjct: 206 KGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLT----SIHILNVDSADIG 261

Query: 186 KYKVTAKNELGESNATISLN 205
           +Y+  A N++G      S+ 
Sbjct: 262 EYQCKASNDVGSYTCVGSIT 281

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score =  187 bits (476), Expect = 5e-56
 Identities = 57/247 (23%), Positives = 99/247 (40%), Gaps = 20/247 (8%)

Query: 8   APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKY 67
            P F +  +  +   G  +  +C++   P+  I W++  T+L       M+      +  
Sbjct: 5   PPYFIEPLEHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQFKNNVAS-- 62

Query: 68  LVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDG 127
              L ++ V  +D G Y  KA+N +G VA+S  L     +   L P+F +K     E  G
Sbjct: 63  ---LVINKVDHSDVGEYTCKAENSVGAVASSAVLVI---KERKLPPSFARKLKDVHETLG 116

Query: 128 KRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKY 187
             + FECRI       V W   G  +K+D   + S   +      +L+I+       G+Y
Sbjct: 117 FPVAFECRINGSEPLQVSWYKDGELLKDDANLQTSFIHNVA----TLQILQTDQSHVGQY 172

Query: 188 KVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLVGE 247
             +A N LG ++++  L        +      P F  +PV+            +C + G 
Sbjct: 173 NCSASNPLGTASSSAKLT-------LSEHEVPPFFDLKPVSVDLALG-ESGTFKCHVTGT 224

Query: 248 PEPTISW 254
               I+W
Sbjct: 225 APIKITW 231

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score =  178 bits (453), Expect = 1e-52
 Identities = 49/252 (19%), Positives = 94/252 (37%), Gaps = 22/252 (8%)

Query: 3   IAEDFAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPI 62
                 PSF +K +   E  G  + FEC++  +    + W++    L +D          
Sbjct: 96  KERKLPPSFARKLKDVHETLGFPVAFECRINGSEPLQVSWYKDGELLKDDANLQTSFIHN 155

Query: 63  GTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIR 122
                   L++    ++  G Y   A N +G  ++S  L  S  ++    P F  KP   
Sbjct: 156 VAT-----LQILQTDQSHVGQYNCSASNPLGTASSSAKLTLSEHEV---PPFFDLKPVSV 207

Query: 123 QEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIE 182
               G+   F+C +       + W+    +++    +K ++ ++      +L ++ VT  
Sbjct: 208 DLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTA----TLTVLKVTKG 263

Query: 183 DAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIEC 242
           DAG+Y   A N  G+ + +  L               P F ++    +          EC
Sbjct: 264 DAGQYTCYASNVAGKDSCSAQLGVQE----------PPRFIKKLEPSRIVKQDEHTRYEC 313

Query: 243 RLVGEPEPTISW 254
           ++ G PE  + W
Sbjct: 314 KIGGSPEIKVLW 325

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score =  163 bits (414), Expect = 4e-47
 Identities = 48/249 (19%), Positives = 104/249 (41%), Gaps = 29/249 (11%)

Query: 8   APSFTQKPQLRQE-DEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTR-TVMKTTPIGTN 65
            P F +K +  +   +     +EC++  +P+  ++W++ ET++ E ++  +     +   
Sbjct: 290 PPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAV- 348

Query: 66  KYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQED 125
                LE+ ++   D+G Y  +A N  G  ++S +L           P F KKP   +  
Sbjct: 349 -----LEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKE------PPVFRKKPHPVETL 397

Query: 126 DGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAG 185
            G  +  EC +Q  P   V W     +++  K++K   +        S+ I++V   D G
Sbjct: 398 KGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLT----SIHILNVDSADIG 453

Query: 186 KYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLV 245
           +Y+  A N++G      S+   +           P F ++     +     ++ ++  + 
Sbjct: 454 EYQCKASNDVGSDTCVGSITLKA----------PPRFVKKLSDISTVVG-EEVQLQATIE 502

Query: 246 GEPEPTISW 254
           G    +++W
Sbjct: 503 GAEPISVAW 511

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score =  141 bits (358), Expect = 4e-39
 Identities = 41/198 (20%), Positives = 78/198 (39%), Gaps = 14/198 (7%)

Query: 8   APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKY 67
            P F +KP   +  +G  +  EC+L   P   + W + + +L    +  + +       +
Sbjct: 384 PPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMS-----ENF 438

Query: 68  LVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDG 127
           L ++ + +V   D G Y+ KA N +G      ++           P F+KK S      G
Sbjct: 439 LTSIHILNVDSADIGEYQCKASNDVGSDTCVGSITLKA------PPRFVKKLSDISTVVG 492

Query: 128 KRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKY 187
           + +  +  I+     +V W     ++  +  +   I    +   A+L+       +AGKY
Sbjct: 493 EEVQLQATIEGAEPISVAWFKDKGEIVRESDN-IWISYSENI--ATLQFSRAEPANAGKY 549

Query: 188 KVTAKNELGESNATISLN 205
               KNE G      +L+
Sbjct: 550 TCQIKNEAGTQECFATLS 567

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194

 Score =  169 bits (431), Expect = 3e-53
 Identities = 49/198 (24%), Positives = 87/198 (43%), Gaps = 10/198 (5%)

Query: 8   APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKY 67
           AP+FTQ  Q     EG+   FE  +   P P++ WFR    +S  T   ++ +       
Sbjct: 5   APTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGR-- 62

Query: 68  LVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDG 127
              L +  V + ++G Y +KA N  G+  ++  L     + +   P F+++        G
Sbjct: 63  -AKLTIPAVTKANSGRYSLKATNGSGQATSTAELLV---KAETAPPNFVQRLQSMTVRQG 118

Query: 128 KRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKY 187
            ++  + R+   P P V +   G +++     + S + D +    SL I +   ED+G Y
Sbjct: 119 SQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLY----SLLIAEAYPEDSGTY 174

Query: 188 KVTAKNELGESNATISLN 205
            V A N +G + +T  L 
Sbjct: 175 SVNATNSVGRATSTAELL 192

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194

 Score =  122 bits (309), Expect = 6e-35
 Identities = 34/143 (23%), Positives = 53/143 (37%), Gaps = 10/143 (6%)

Query: 112 APTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYF 171
           APTF +        +G    FE  I   P P V W   G  +         I        
Sbjct: 5   APTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRA- 63

Query: 172 ASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQS 231
             L I  VT  ++G+Y + A N  G++ +T  L        V  E   P F +R  +   
Sbjct: 64  -KLTIPAVTKANSGRYSLKATNGSGQATSTAELL-------VKAETAPPNFVQRLQSMTV 115

Query: 232 DDDLNDIVIECRLVGEPEPTISW 254
               + + ++ R+ G P P + +
Sbjct: 116 RQG-SQVRLQVRVTGIPTPVVKF 137

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194

 Score = 76.3 bits (188), Expect = 3e-17
 Identities = 21/99 (21%), Positives = 42/99 (42%), Gaps = 5/99 (5%)

Query: 4   AEDFAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIG 63
           AE   P+F Q+ Q     +G+++  + ++   P P + ++R   ++            I 
Sbjct: 99  AETAPPNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQ-----IS 153

Query: 64  TNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLN 102
               L +L + +    D+G Y V A N +G   ++  L 
Sbjct: 154 QEGDLYSLLIAEAYPEDSGTYSVNATNSVGRATSTAELL 192

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score =  162 bits (412), Expect = 6e-49
 Identities = 50/270 (18%), Positives = 97/270 (35%), Gaps = 31/270 (11%)

Query: 2   GIAEDFAPSFTQKPQLRQEDEGNRLIFECQLL-CNPKPDIVWFRGETQLSEDTRTVMKTT 60
           GI     P F +            ++ +C++     +  IVW++ E ++S D +   K  
Sbjct: 1   GIDPFTGPHFVEYLSWEVT-GECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFK-- 57

Query: 61  PIGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFS-----REQIDGLAPTF 115
                  +  L + +  + DAG+Y+V  K+  G+  + + L          ++       
Sbjct: 58  -----DGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEAFKELMMEVCKKIALS 112

Query: 116 LKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLE 175
                I+   +G +L             V WSH+G  ++   R K  +  +       L+
Sbjct: 113 ATDLKIQSTAEGIQLYSFVTY-YVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIW----LQ 167

Query: 176 IIDVTIEDAGKYKVTAKNELGESNATISLNFDSDD-----------APVPGEGTKPVFTE 224
           I + T  D GKY +   +       T+ L+  + D           A +  +    V   
Sbjct: 168 INEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGG 227

Query: 225 RPVTKQSDDDLNDIVIECRLVGEPEPTISW 254
            P      +    + + C + G+P P +SW
Sbjct: 228 LPDVVTIQEG-KALNLTCNVWGDPPPEVSW 256

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score =  138 bits (348), Expect = 2e-39
 Identities = 34/216 (15%), Positives = 69/216 (31%), Gaps = 24/216 (11%)

Query: 5   EDFAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGT 64
                      +++   EG +L             + W    + +    R  +KT   G 
Sbjct: 106 CKKIALSATDLKIQSTAEGIQLYSFVTYY-VEDLKVNWSHNGSAIRYSDR--VKTGVTGE 162

Query: 65  NKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGL------------- 111
               + L++++    D G Y ++  +       +++L+                      
Sbjct: 163 Q---IWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEK 219

Query: 112 --APTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHS 169
             A      P +    +GK L   C +  DP P V W  +   +  D       +    +
Sbjct: 220 NRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALASDDHCNLKFEAGRTA 279

Query: 170 YFASLEIIDVTIEDAGKYKVTAKNELGESNATISLN 205
                 I  V+  D+GKY +  KN+ G   +  +++
Sbjct: 280 ---YFTINGVSTADSGKYGLVVKNKYGSETSDFTVS 312

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score = 78.4 bits (193), Expect = 3e-17
 Identities = 22/100 (22%), Positives = 39/100 (39%), Gaps = 4/100 (4%)

Query: 3   IAEDFAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPI 62
             ++ A      P +    EG  L   C +  +P P++ W + E  L+ D    +K    
Sbjct: 217 AEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALASDDHCNLKFEAG 276

Query: 63  GTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLN 102
            T        ++ V   D+G Y +  KNK G   +   ++
Sbjct: 277 RT----AYFTINGVSTADSGKYGLVVKNKYGSETSDFTVS 312

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197

 Score =  154 bits (391), Expect = 4e-47
 Identities = 40/199 (20%), Positives = 81/199 (40%), Gaps = 9/199 (4%)

Query: 8   APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQL-SEDTRTVMKTTPIGTNK 66
           AP F ++ +       +     C++  +PKP + W+R   ++ ++  +  ++    G + 
Sbjct: 4   APHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYH- 62

Query: 67  YLVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDD 126
               L +  V + DA +Y+V+A N+ G V+ + +L           P  L+         
Sbjct: 63  ---QLIIASVTDDDATVYQVRATNQGGSVSGTASLEV-EVPAKIHLPKTLEGMGAVHALR 118

Query: 127 GKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGK 186
           G+ +  +      P P + W      +  +  ++  + +   S    +    V  +DAG 
Sbjct: 119 GEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTS---LVFPNGVERKDAGF 175

Query: 187 YKVTAKNELGESNATISLN 205
           Y V AKN  G    T+ L+
Sbjct: 176 YVVCAKNRFGIDQKTVELD 194

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197

 Score =  122 bits (307), Expect = 1e-34
 Identities = 36/146 (24%), Positives = 59/146 (40%), Gaps = 10/146 (6%)

Query: 110 GLAPTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKED-KRHKFSIDKDGH 168
            +AP F ++               C++   P P V W   G ++  D  +++    K G+
Sbjct: 2   AMAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGY 61

Query: 169 SYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVT 228
                L I  VT +DA  Y+V A N+ G  + T SL  +     VP +   P   E    
Sbjct: 62  H---QLIIASVTDDDATVYQVRATNQGGSVSGTASLEVE-----VPAKIHLPKTLEGMGA 113

Query: 229 KQSDDDLNDIVIECRLVGEPEPTISW 254
             +      + I+    G+P+P I+W
Sbjct: 114 VHALRG-EVVSIKIPFSGKPDPVITW 138

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197

 Score = 78.6 bits (194), Expect = 5e-18
 Identities = 20/99 (20%), Positives = 36/99 (36%), Gaps = 4/99 (4%)

Query: 4   AEDFAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIG 63
           A+   P   +         G  +  +      P P I W +G+  +  +     +     
Sbjct: 100 AKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGH--YQVIVTR 157

Query: 64  TNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLN 102
           +   L  +  + V   DAG Y V AKN+ G    ++ L+
Sbjct: 158 SFTSL--VFPNGVERKDAGFYVVCAKNRFGIDQKTVELD 194

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score =  153 bits (387), Expect = 3e-45
 Identities = 50/250 (20%), Positives = 93/250 (37%), Gaps = 19/250 (7%)

Query: 8   APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKY 67
            P F ++P+ +    G    F CQ   +PKP + W +   +++      ++         
Sbjct: 6   PPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEF----DESA 61

Query: 68  LVALELDDV-IETDAGLYKVKAKNKMGEVAASINLNFSRE-QIDGLAPTFLKKPSIRQED 125
              L +  +    D  +Y+  A+N +GE+     L   RE Q+    P     P ++  +
Sbjct: 62  GAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVE 121

Query: 126 DGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHK-FSIDKDGHSYFASLEIIDVTIEDA 184
             +     C    +P P + W    + V     +      + G     +L+I      D 
Sbjct: 122 RTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSG-----ALQIESSEETDQ 176

Query: 185 GKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRL 244
           GKY+  A N  G   ++        +  V  +   P F+  P++ +      ++ I C  
Sbjct: 177 GKYECVATNSAGVRYSS------PANLYVRVQNVAPRFSILPMSHEIMPG-GNVNITCVA 229

Query: 245 VGEPEPTISW 254
           VG P P + W
Sbjct: 230 VGSPMPYVKW 239

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score =  126 bits (317), Expect = 5e-35
 Identities = 40/200 (20%), Positives = 66/200 (33%), Gaps = 21/200 (10%)

Query: 8   APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTV-MKTTPIGTNK 66
            P+    PQL+  +        C    NP P+I WF+    +        +K    G   
Sbjct: 108 FPNIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGA-- 165

Query: 67  YLVALELDDVIETDAGLYKVKAKNKMGE-VAASINLNFSREQIDGLAPTFLKKPSIRQED 125
               L+++   ETD G Y+  A N  G   ++  NL     ++  +AP F   P   +  
Sbjct: 166 ----LQIESSEETDQGKYECVATNSAGVRYSSPANL---YVRVQNVAPRFSILPMSHEIM 218

Query: 126 DGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAG 185
            G  +   C     P P V W      +  +                   +    ++D+ 
Sbjct: 219 PGGNVNITCVAVGSPMPYVKWMQGAEDLTPEDDMPVG----------RNVLELTDVKDSA 268

Query: 186 KYKVTAKNELGESNATISLN 205
            Y   A + LG   A   + 
Sbjct: 269 NYTCVAMSSLGVIEAVAQIT 288

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score = 69.5 bits (170), Expect = 4e-14
 Identities = 19/98 (19%), Positives = 37/98 (37%), Gaps = 11/98 (11%)

Query: 5   EDFAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGT 64
           ++ AP F+  P   +   G  +   C  + +P P + W +G   L+ +        P+G 
Sbjct: 202 QNVAPRFSILPMSHEIMPGGNVNITCVAVGSPMPYVKWMQGAEDLTPEDD-----MPVGR 256

Query: 65  NKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLN 102
                   L+     D+  Y   A + +G + A   + 
Sbjct: 257 ------NVLELTDVKDSANYTCVAMSSLGVIEAVAQIT 288

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197

 Score =  147 bits (372), Expect = 3e-44
 Identities = 44/208 (21%), Positives = 75/208 (36%), Gaps = 19/208 (9%)

Query: 2   GIAEDFAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTP 61
           G     AP   ++ +      G      CQ++  P PDI W+R   +L +  +  M    
Sbjct: 1   GAMSGEAPGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMS--- 57

Query: 62  IGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSI 121
             ++     L +    + D G+Y   A N++GEV  S  L           P F     +
Sbjct: 58  --SDGRTHTLTVMTEEQEDEGVYTCIATNEVGEVETSSKLLLQA------TPQFHPGYPL 109

Query: 122 RQE---DDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIID 178
           +++     G  L         P P + W H    ++  +       +        L + +
Sbjct: 110 KEKYYGAVGSTLRLHVMYIGRPVPAMTWFHGQKLLQNSENITIENTEHYT----HLVMKN 165

Query: 179 VTIE-DAGKYKVTAKNELGESNATISLN 205
           V  +  AGKYKV   N  G  +A + + 
Sbjct: 166 VQRKTHAGKYKVQLSNVFGTVDAILDVE 193

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197

 Score =  118 bits (297), Expect = 5e-33
 Identities = 33/149 (22%), Positives = 57/149 (38%), Gaps = 16/149 (10%)

Query: 108 IDGLAPTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDG 167
           + G AP   K+        G+     C+I   P P + W   G ++ + +++K S D   
Sbjct: 3   MSGEAPGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRT 62

Query: 168 HSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPV 227
           H    +L ++    ED G Y   A NE+GE   +  L   +           P F     
Sbjct: 63  H----TLTVMTEEQEDEGVYTCIATNEVGEVETSSKLLLQA----------TPQFHPGYP 108

Query: 228 TKQSDDDL--NDIVIECRLVGEPEPTISW 254
            K+       + + +    +G P P ++W
Sbjct: 109 LKEKYYGAVGSTLRLHVMYIGRPVPAMTW 137

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score =  148 bits (376), Expect = 1e-43
 Identities = 36/264 (13%), Positives = 86/264 (32%), Gaps = 27/264 (10%)

Query: 8   APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKY 67
            P   +      +D    L FEC     PK +  W +      +  R  +++        
Sbjct: 3   DPFTKEVVVNVDDDGVISLNFECDK-MTPKSEFSWSKDYVSTEDSPRLEVES-----KGN 56

Query: 68  LVALELDDVIETDAGLYKVKAKNKMGEVAASI------NLNFSREQIDGLAPTFLKKPSI 121
              +   D+   D G+Y     +  G  ++ +          +           +K    
Sbjct: 57  KTKMTFKDLGMDDLGIYSCDVTDTDGIASSYLIDEEELKRLLALSHEHKFPTVPVKSELA 116

Query: 122 RQEDDGKRLLFECRIQ-ADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVT 180
            +  +  ++ F  + +       V +  +  ++ E  ++K  ID++       + +  + 
Sbjct: 117 VEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGII--EMFMEKLQ 174

Query: 181 IEDAGKYKVTAKNELGESNATISLNFD---------SDDAPVPGEGTKPVFTERPVTKQS 231
            ED G Y    ++    +++T+ L  D                     P F E    + +
Sbjct: 175 DEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEVT 234

Query: 232 DDDLNDIVIECRLVGE-PEPTISW 254
            +   +++++C++     E  I W
Sbjct: 235 GEC--NVLLKCKVANIKKETHIVW 256

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score =  122 bits (307), Expect = 2e-33
 Identities = 34/213 (15%), Positives = 81/213 (38%), Gaps = 25/213 (11%)

Query: 7   FAPSFTQKPQLRQEDEGNRLIFECQL-LCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTN 65
           F     +     +  E  ++ F  Q    +    + +   E ++ E  +  M       N
Sbjct: 106 FPTVPVKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDR---N 162

Query: 66  KYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLN-------------FSREQIDGLA 112
             ++ + ++ + + D G Y  + ++      +++ L                +E I    
Sbjct: 163 TGIIEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQG 222

Query: 113 PTFLKKPSIRQEDDGKRLLFECRIQADPAPT-VIWSHSGVQVKEDKRHKFSIDKDGHSYF 171
           P F++  S  +      +L +C++      T ++W     ++  D++H F          
Sbjct: 223 PHFVEYLSW-EVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGI------ 275

Query: 172 ASLEIIDVTIEDAGKYKVTAKNELGESNATISL 204
            +L I + + +DAG Y+V  K++ G+  + + L
Sbjct: 276 CTLLITEFSKKDAGIYEVILKDDRGKDKSRLKL 308

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score = 97.4 bits (242), Expect = 5e-24
 Identities = 19/147 (12%), Positives = 43/147 (29%), Gaps = 7/147 (4%)

Query: 110 GLAPTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHS 169
           G+ P   +      +D    L FEC     P     WS   V  ++  R +     +   
Sbjct: 1   GIDPFTKEVVVNVDDDGVISLNFECDK-MTPKSEFSWSKDYVSTEDSPRLEVESKGNKT- 58

Query: 170 YFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTK--PVFTERPV 227
               +   D+ ++D G Y     +  G +++ +    +           K   V  +  +
Sbjct: 59  ---KMTFKDLGMDDLGIYSCDVTDTDGIASSYLIDEEELKRLLALSHEHKFPTVPVKSEL 115

Query: 228 TKQSDDDLNDIVIECRLVGEPEPTISW 254
             +  +                  +++
Sbjct: 116 AVEILEKGQVRFWMQAEKLSGNAKVNY 142

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score =  154 bits (391), Expect = 4e-43
 Identities = 49/250 (19%), Positives = 89/250 (35%), Gaps = 27/250 (10%)

Query: 8   APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKY 67
            P   Q  Q    + G  +  +C    NP P+I W     +++ + R  +          
Sbjct: 429 PPVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIANNDRYQVGQYVTVNGDV 488

Query: 68  LVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDG 127
           +  L +  V   D GLYK  AK+K+G    S  LN            ++++   +    G
Sbjct: 489 VSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNV-------YGLPYIRQMEKKAIVAG 541

Query: 128 KRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTI-EDAGK 186
           + L+  C +   P  +++W      +  +++ K  +  +G     +L I +V    D   
Sbjct: 542 ETLIVTCPVAGYPIDSIVWERDNRALPINRKQK--VFPNG-----TLIIENVERNSDQAT 594

Query: 187 YKVTAKNELGES-NATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLV 245
           Y   AKN+ G S   ++ +        V      P        +        + + C + 
Sbjct: 595 YTCVAKNQEGYSARGSLEVQ-------VMV---LPRIIPFAFEEGPAQVGQYLTLHCSVP 644

Query: 246 GEPEP-TISW 254
           G   P  I W
Sbjct: 645 GGDLPLNIDW 654

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score =  150 bits (379), Expect = 1e-41
 Identities = 50/261 (19%), Positives = 87/261 (33%), Gaps = 20/261 (7%)

Query: 3   IAEDFAPSFTQKPQLRQE-DEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTP 61
            A+   P F ++P  R +         EC+   NP P+I+W R +     D   + + + 
Sbjct: 33  DADQKGPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISS 92

Query: 62  IGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSI 121
            G   +      D   E  A +Y   A+N+ G + +      +      +A  +    + 
Sbjct: 93  DGKLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRA-----VVAQYYEADVNK 147

Query: 122 RQEDDGKRLLFECRI---QADPAPTVIWSHSGVQVKEDKRH---KFSIDKDGHSYFASLE 175
                G   + +C I    AD    V W     +          K+ +   G      L 
Sbjct: 148 EHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSG-----ELH 202

Query: 176 IIDVTIEDA-GKYKVTAKNELG-ESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDD 233
           I +V  ED    Y+   K+ L  E+  + +        P+     K V   +   K    
Sbjct: 203 IREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSAVPKVVSLAKFDMKTYSG 262

Query: 234 DLNDIVIECRLVGEPEPTISW 254
             + + + C   G P P   W
Sbjct: 263 S-STMALLCPAQGYPVPVFRW 282

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score =  149 bits (377), Expect = 3e-41
 Identities = 44/244 (18%), Positives = 78/244 (31%), Gaps = 31/244 (12%)

Query: 11  FTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVA 70
              K  ++     + +   C     P P   W++     +     V+       +     
Sbjct: 251 SLAKFDMKTYSGSSTMALLCPAQGYPVPVFRWYKFIEGTTRKQAVVLNDRVKQVSG---T 307

Query: 71  LELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRL 130
           L + D +  D+G Y     N +G  +    L  +         +    P  +  D G+  
Sbjct: 308 LIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTA------PLSAKIDPPTQTVDFGRPA 361

Query: 131 LFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVT 190
           +F C+   +P  TV W   G  +   +                L I  V  ED G Y+  
Sbjct: 362 VFTCQYTGNPIKTVSWMKDGKAIGHSES--------------VLRIESVKKEDKGMYQCF 407

Query: 191 AKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLVGEPEP 250
            +N+   + A+  L       P       PV  +    +  +     + ++C   G P P
Sbjct: 408 VRNDRESAEASAELKLGGRFDP-------PVIRQAFQEETMEPG-PSVFLKCVAGGNPTP 459

Query: 251 TISW 254
            ISW
Sbjct: 460 EISW 463

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score =  147 bits (371), Expect = 2e-40
 Identities = 47/249 (18%), Positives = 84/249 (33%), Gaps = 33/249 (13%)

Query: 8   APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKY 67
             S    P  +  D G   +F CQ   NP   + W +    +                  
Sbjct: 343 PLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSESV------------ 390

Query: 68  LVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDG 127
              L ++ V + D G+Y+   +N      AS  L           P   +       + G
Sbjct: 391 ---LRIESVKKEDKGMYQCFVRNDRESAEASAELKL---GGRFDPPVIRQAFQEETMEPG 444

Query: 128 KRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGH-SYFASLEIIDVTIEDAGK 186
             +  +C    +P P + W   G ++  + R++       +    + L I  V   D G 
Sbjct: 445 PSVFLKCVAGGNPTPEISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGL 504

Query: 187 YKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTE-RPVTKQSDDDLNDIVIECRLV 245
           YK  AK+++G +  +  LN       V G    P   +       + +    +++ C + 
Sbjct: 505 YKCIAKSKVGVAEHSAKLN-------VYG---LPYIRQMEKKAIVAGE---TLIVTCPVA 551

Query: 246 GEPEPTISW 254
           G P  +I W
Sbjct: 552 GYPIDSIVW 560

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score =  140 bits (354), Expect = 4e-38
 Identities = 46/260 (17%), Positives = 78/260 (30%), Gaps = 31/260 (11%)

Query: 7   FAPSFTQKPQLRQEDEGNRLIFECQL---LCNPKPDIVWFRGETQLSEDTRTV---MKTT 60
            A  +           GN  + +C +   + +    + W   E +               
Sbjct: 137 VAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVL 196

Query: 61  PIGTNKYLVALELDDVIETDA-GLYKVKAKNKMGE---VAASINLNFSREQIDGLAP--T 114
           P G       L + +V   D    Y+ + K+++     ++A+       E I    P   
Sbjct: 197 PSGE------LHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSAVPKVV 250

Query: 115 FLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASL 174
            L K  ++       +   C  Q  P P   W          +    +      S   +L
Sbjct: 251 SLAKFDMKTYSGSSTMALLCPAQGYPVPVFRWYKFIEGTTRKQAVVLNDRVKQVS--GTL 308

Query: 175 EIIDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDD 234
            I D  +ED+GKY     N +G  +    L   +                 P T+  D  
Sbjct: 309 IIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTA----------PLSAKIDPPTQTVDFG 358

Query: 235 LNDIVIECRLVGEPEPTISW 254
               V  C+  G P  T+SW
Sbjct: 359 -RPAVFTCQYTGNPIKTVSW 377

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score =  133 bits (336), Expect = 1e-35
 Identities = 57/250 (22%), Positives = 87/250 (34%), Gaps = 30/250 (12%)

Query: 8   APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKY 67
              + ++ + +    G  LI  C +   P   IVW R    L  + +   K  P GT   
Sbjct: 526 GLPYIRQMEKKAIVAGETLIVTCPVAGYPIDSIVWERDNRALPINRK--QKVFPNGT--- 580

Query: 68  LVALELDDV-IETDAGLYKVKAKNKMGEVA-ASINLNFSREQIDGLAPTFLKKPSIRQED 125
              L +++V   +D   Y   AKN+ G  A  S+ +     Q+  L              
Sbjct: 581 ---LIIENVERNSDQATYTCVAKNQEGYSARGSLEV-----QVMVLPRIIPFAFEEGPAQ 632

Query: 126 DGKRLLFECRIQADPAP-TVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDA 184
            G+ L   C +     P  + W+  G  + ED     S      S    L I  V    A
Sbjct: 633 VGQYLTLHCSVPGGDLPLNIDWTLDGQAISEDLGITTSRVGRRGS---VLTIEAVEASHA 689

Query: 185 GKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRL 244
           G +   A+N  G    T  LN              P +   P  K      +D  +EC+ 
Sbjct: 690 GNFTCHARNLAGHQQFTTPLNVYV----------PPRWILEPTDKAFAQG-SDAKVECKA 738

Query: 245 VGEPEPTISW 254
            G P+P ++W
Sbjct: 739 DGFPKPQVTW 748

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score =  115 bits (290), Expect = 1e-29
 Identities = 33/197 (16%), Positives = 62/197 (31%), Gaps = 12/197 (6%)

Query: 9   PSFTQKPQLRQEDEGNRLIFECQLLCNPKP-DIVWFRGETQLSEDTRTVMKTTPIGTNKY 67
                  +      G  L   C +     P +I W      +SED            +  
Sbjct: 620 RIIPFAFEEGPAQVGQYLTLHCSVPGGDLPLNIDWTLDGQAISEDLGITTSRVGRRGSV- 678

Query: 68  LVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDG 127
              L ++ V  + AG +   A+N  G    +  LN          P ++ +P+ +    G
Sbjct: 679 ---LTIEAVEASHAGNFTCHARNLAGHQQFTTPLNVYV------PPRWILEPTDKAFAQG 729

Query: 128 KRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKY 187
                EC+    P P V W  +      +         +      +L + ++   + G Y
Sbjct: 730 SDAKVECKADGFPKPQVTWKKAVGDTPGE-YKDLKKSDNIRVEEGTLHVDNIQKTNEGYY 788

Query: 188 KVTAKNELGESNATISL 204
              A N +G   + + +
Sbjct: 789 LCEAINGIGSGLSAVIM 805

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score =  100 bits (249), Expect = 4e-24
 Identities = 40/189 (21%), Positives = 60/189 (31%), Gaps = 19/189 (10%)

Query: 71  LELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQE-DDGKR 129
           + + +       L+   A    G    + N        D   P FLK+P+ R +  +   
Sbjct: 1   MNMPNERLKWLMLFAAVALIACGSQTLAANP----PDADQKGPVFLKEPTNRIDFSNSTG 56

Query: 130 LLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIE-DAGKYK 188
              EC+   +P P +IW  S      D      I  DG   F      D   E  A  Y 
Sbjct: 57  AEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYA 116

Query: 189 VTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRL---V 245
             A+N+ G           S D  V        +      +      N  VI+C +   V
Sbjct: 117 CLARNQFGSI--------ISRDVHVR-AVVAQYYEADVNKEHVIRG-NSAVIKCLIPSFV 166

Query: 246 GEPEPTISW 254
            +    +SW
Sbjct: 167 ADFVEVVSW 175

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 66.1 bits (161), Expect = 1e-12
 Identities = 19/94 (20%), Positives = 43/94 (45%), Gaps = 2/94 (2%)

Query: 8   APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKY 67
            P +  +P  +   +G+    EC+    PKP + W +       + + + K+  I   + 
Sbjct: 714 PPRWILEPTDKAFAQGSDAKVECKADGFPKPQVTWKKAVGDTPGEYKDLKKSDNIRVEEG 773

Query: 68  LVALELDDVIETDAGLYKVKAKNKMGEVAASINL 101
              L +D++ +T+ G Y  +A N +G   +++ +
Sbjct: 774 --TLHVDNIQKTNEGYYLCEAINGIGSGLSAVIM 805

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score =  142 bits (359), Expect = 7e-41
 Identities = 42/274 (15%), Positives = 86/274 (31%), Gaps = 38/274 (13%)

Query: 1   MGIAEDFAPSFTQKPQLRQEDEGNRLIFECQLLC-NPKPDIVWFRGETQLSEDTRTVMKT 59
           MG A +       + +      G+ +   C      P    VW +  T L    R ++  
Sbjct: 1   MGRAAEVPGPEPGQQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPSERVLVGP 60

Query: 60  TPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINL---------------NFS 104
                      L++ +    D+G Y  + +     +                        
Sbjct: 61  Q---------RLQVLNASHEDSGAYSCRQRLTQRVLCHFSVRVTDAPSSGDDEDGEDEAE 111

Query: 105 REQIDGLAPTFLKKPSIRQED----DGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHK 160
              +D  AP + +   + ++         + F C    +P P++ W  +G + + + R  
Sbjct: 112 DTGVDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIG 171

Query: 161 FSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKP 220
               +       SL +  V   D G Y    +N+ G    T +L+        P      
Sbjct: 172 GIKLRHQQW---SLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRP-----I 223

Query: 221 VFTERPVTKQSDDDLNDIVIECRLVGEPEPTISW 254
           +    P  + +    +D+   C++  + +P I W
Sbjct: 224 LQAGLPANQTAVLG-SDVEFHCKVYSDAQPHIQW 256

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score =  133 bits (336), Expect = 1e-37
 Identities = 46/211 (21%), Positives = 84/211 (39%), Gaps = 18/211 (8%)

Query: 8   APSFTQKPQLRQED----EGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIG 63
           AP +T+  ++ ++       N + F C    NP P I W +   +   + R         
Sbjct: 119 APYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQ 178

Query: 64  TNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQ 123
                 +L ++ V+ +D G Y    +NK G +  +  L+   E+           P+ + 
Sbjct: 179 QW----SLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDV-LERSPHRPILQAGLPANQT 233

Query: 124 EDDGKRLLFECRIQADPAPTVIWSH----SGVQVKEDKRHKFSIDKDGHSYF-----ASL 174
              G  + F C++ +D  P + W      +G +V  D     ++ K   +         L
Sbjct: 234 AVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVL 293

Query: 175 EIIDVTIEDAGKYKVTAKNELGESNATISLN 205
            + +VT EDAG+Y   A N +G S+ +  L 
Sbjct: 294 SLHNVTFEDAGEYTCLAGNSIGFSHHSAWLV 324

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score = 60.8 bits (147), Expect = 5e-11
 Identities = 20/107 (18%), Positives = 35/107 (32%), Gaps = 8/107 (7%)

Query: 4   AEDFAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGE----TQLSEDTRTVMKT 59
           +          P  +    G+ + F C++  + +P I W +      +++  D    +  
Sbjct: 218 SPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTV 277

Query: 60  TPIGTNKYLVA----LELDDVIETDAGLYKVKAKNKMGEVAASINLN 102
                          L L +V   DAG Y   A N +G    S  L 
Sbjct: 278 LKTAGANTTDKELEVLSLHNVTFEDAGEYTCLAGNSIGFSHHSAWLV 324

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score =  143 bits (361), Expect = 1e-40
 Identities = 51/249 (20%), Positives = 98/249 (39%), Gaps = 25/249 (10%)

Query: 8   APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTV-MKTTPIGTNK 66
              F  + +      G+ ++ +C+++ +P P I W + +  L+       +   P G   
Sbjct: 121 PLRFLSQTESITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSRVVVLPSGA-- 178

Query: 67  YLVALELDDVIETDAGLYKVKAKNKMGE-VAASINLNFSREQIDGLAPTFLKKPSIRQED 125
               L++  +   D+G+Y+  A+N           +    +        FL++PS     
Sbjct: 179 ----LQISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAI 234

Query: 126 DGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAG 185
           +GK  + EC +   P P+  W      ++   +  +S+         +L I +VT +D+G
Sbjct: 235 EGKDAVLECCVSGYPPPSFTWLRGEEVIQLRSKK-YSLLGGS-----NLLISNVTDDDSG 288

Query: 186 KYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLV 245
            Y      +    +A+  L        VP     P F   P    + +   DI  EC + 
Sbjct: 289 TYTCVVTYKNENISASAELTVL-----VP-----PWFLNHPSNLYAYES-MDIEFECAVS 337

Query: 246 GEPEPTISW 254
           G+P PT++W
Sbjct: 338 GKPVPTVNW 346

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score =  129 bits (327), Expect = 1e-35
 Identities = 50/202 (24%), Positives = 73/202 (36%), Gaps = 20/202 (9%)

Query: 4   AEDFAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIG 63
                  F Q+P      EG   + EC +   P P   W RGE  +   ++         
Sbjct: 217 GLHRQLYFLQRPSNVIAIEGKDAVLECCVSGYPPPSFTWLRGEEVIQLRSKKYS-LLGGS 275

Query: 64  TNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQ 123
                  L + +V + D+G Y      K   ++AS  L           P FL  PS   
Sbjct: 276 N------LLISNVTDDDSGTYTCVVTYKNENISASAELTVLV------PPWFLNHPSNLY 323

Query: 124 EDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIED 183
             +   + FEC +   P PTV W  +G  V       F I         +L I+ V   D
Sbjct: 324 AYESMDIEFECAVSGKPVPTVNWMKNGDVVIPSDY--FQIVGGS-----NLRILGVVKSD 376

Query: 184 AGKYKVTAKNELGESNATISLN 205
            G Y+  A+NE G + ++  L 
Sbjct: 377 EGFYQCVAENEAGNAQSSAQLI 398

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score =  127 bits (321), Expect = 9e-35
 Identities = 49/256 (19%), Positives = 91/256 (35%), Gaps = 30/256 (11%)

Query: 8   APSFTQKPQLRQEDEGNRLIFECQLLCN-PKPDIVWFRGETQLSEDTRTVMKTTPIGTNK 66
           +  F  +P       G  ++  C    +   P I W +    L+       +  P G+  
Sbjct: 21  SLHFVSEPSDAVTMRGGNVLLNCSAESDRGVPVIKWKKDGLILALGMDDRKQQLPNGSL- 79

Query: 67  YLVALELDDVIETDAGLYKVKAKNKMGEVAAS--INLNFSREQIDGLAPTFLKKPSIRQE 124
            +  +      + D GLY+ +A         S    +  +          FL +      
Sbjct: 80  LIQNILHSRHHKPDEGLYQCEASLGDSGSIISRTAKVMVAG------PLRFLSQTESITA 133

Query: 125 DDGKRLLFECRIQADPAPTVIWSHSGVQVKE-DKRHKFSIDKDGHSYFASLEIIDVTIED 183
             G  +L +C +  DP PT+ W  +   +       +  +   G     +L+I  +   D
Sbjct: 134 FMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSRVVVLPSG-----ALQISRLQPGD 188

Query: 184 AGKYKVTAKNELGESNATISLNFDSDDAPV-----PGEGTKPVFTERPVTKQSDDDLNDI 238
           +G Y+ +A+N               ++A V     PG   +  F +RP    + +   D 
Sbjct: 189 SGVYRCSARNPASTR--------TGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEG-KDA 239

Query: 239 VIECRLVGEPEPTISW 254
           V+EC + G P P+ +W
Sbjct: 240 VLECCVSGYPPPSFTW 255

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score = 88.0 bits (218), Expect = 3e-20
 Identities = 28/173 (16%), Positives = 57/173 (32%), Gaps = 24/173 (13%)

Query: 87  KAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQAD-PAPTVI 145
           +  +++       +    R      +  F+ +PS      G  +L  C  ++D   P + 
Sbjct: 2   RWGSELESSHHHHHHGGRR------SLHFVSEPSDAVTMRGGNVLLNCSAESDRGVPVIK 55

Query: 146 WSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNA--TIS 203
           W   G+ +      +     +G     ++        D G Y+  A      S    T  
Sbjct: 56  WKKDGLILALGMDDRKQQLPNGSLLIQNILHSRHHKPDEGLYQCEASLGDSGSIISRTAK 115

Query: 204 LNFDSDDAPVPGEGTKPVFTERP--VTKQSDDDLNDIVIECRLVGEPEPTISW 254
           +                 F  +   +T    D    ++++C ++G+P PTI W
Sbjct: 116 VMV----------AGPLRFLSQTESITAFMGD---TVLLKCEVIGDPMPTIHW 155

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212

 Score =  136 bits (345), Expect = 5e-40
 Identities = 31/216 (14%), Positives = 67/216 (31%), Gaps = 26/216 (12%)

Query: 6   DFAPSFTQKPQLRQEDEGNRLIFECQLLC-NPKPDIVWFRGETQLSEDTRTVMKTTPIGT 64
                     +++   EG +L     +        + W    + +    R        G 
Sbjct: 2   SSIALSATDLKIQSTAEGIQL--YSFVTYYVEDLKVNWSHNGSAIRYSDRVK-----TGV 54

Query: 65  NKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGL------------- 111
               + L++++    D G Y ++  +       +++L+                      
Sbjct: 55  TGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEK 114

Query: 112 --APTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHS 169
             A      P +    +GK L   C +  DP P V W  +   + +        +    +
Sbjct: 115 NRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNLKFEAGRTA 174

Query: 170 YFASLEIIDVTIEDAGKYKVTAKNELGESNATISLN 205
                 I  V+  D+GKY +  KN+ G   +  +++
Sbjct: 175 ---YFTINGVSTADSGKYGLVVKNKYGSETSDFTVS 207

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212

 Score = 93.4 bits (232), Expect = 2e-23
 Identities = 26/140 (18%), Positives = 49/140 (35%), Gaps = 17/140 (12%)

Query: 127 GKRLLFECRIQA-DPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAG 185
            + +     +        V WSH+G  ++   R K  +  +       L+I + T  D G
Sbjct: 17  AEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIW----LQINEPTPNDKG 72

Query: 186 KYKVTAKNELGESNATISLNFDSDD-----------APVPGEGTKPVFTERPVTKQSDDD 234
           KY +   +       T+ L+  + D           A +  +    V    P      + 
Sbjct: 73  KYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEG 132

Query: 235 LNDIVIECRLVGEPEPTISW 254
              + + C + G+P P +SW
Sbjct: 133 -KALNLTCNVWGDPPPEVSW 151

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212

 Score = 78.8 bits (194), Expect = 6e-18
 Identities = 21/98 (21%), Positives = 39/98 (39%), Gaps = 4/98 (4%)

Query: 5   EDFAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGT 64
           ++ A      P +    EG  L   C +  +P P++ W + E  L++     +K     T
Sbjct: 114 KNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNLKFEAGRT 173

Query: 65  NKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLN 102
                   ++ V   D+G Y +  KNK G   +   ++
Sbjct: 174 ----AYFTINGVSTADSGKYGLVVKNKYGSETSDFTVS 207

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305

 Score =  138 bits (350), Expect = 7e-40
 Identities = 40/198 (20%), Positives = 81/198 (40%), Gaps = 9/198 (4%)

Query: 8   APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQL-SEDTRTVMKTTPIGTNK 66
           AP F ++ +       +     C++  +PKP + W+R   ++ ++  +  ++    G ++
Sbjct: 4   APHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQ 63

Query: 67  YLVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDD 126
               L +  V + DA +Y+V+A N+ G V+ + +L           P  L+         
Sbjct: 64  ----LIIASVTDDDATVYQVRATNQGGSVSGTASLE-VEVPAKIHLPKTLEGMGAVHALR 118

Query: 127 GKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGK 186
           G+ +  +      P P + W      +  +  ++  + +   S    +    V  +DAG 
Sbjct: 119 GEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTS---LVFPNGVERKDAGF 175

Query: 187 YKVTAKNELGESNATISL 204
           Y V AKN  G    T+ L
Sbjct: 176 YVVCAKNRFGIDQKTVEL 193

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305

 Score =  101 bits (254), Expect = 7e-26
 Identities = 35/146 (23%), Positives = 59/146 (40%), Gaps = 10/146 (6%)

Query: 110 GLAPTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVK-EDKRHKFSIDKDGH 168
            +AP F ++               C++   P P V W   G ++  +  +++    K G+
Sbjct: 2   AMAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGY 61

Query: 169 SYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVT 228
                L I  VT +DA  Y+V A N+ G  + T SL     +  VP +   P   E    
Sbjct: 62  H---QLIIASVTDDDATVYQVRATNQGGSVSGTASL-----EVEVPAKIHLPKTLEGMGA 113

Query: 229 KQSDDDLNDIVIECRLVGEPEPTISW 254
             +      + I+    G+P+P I+W
Sbjct: 114 VHALRG-EVVSIKIPFSGKPDPVITW 138

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score =  137 bits (347), Expect = 2e-39
 Identities = 45/248 (18%), Positives = 91/248 (36%), Gaps = 24/248 (9%)

Query: 8   APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKY 67
               T      +   G    F C  +  P+    +     ++    R V++         
Sbjct: 4   LLQVTISLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQK-----EGV 58

Query: 68  LVALELDDVIETDAGLYKVKAKNKMGEVA-ASINLNFSREQIDGLAPTFLKKPSIRQEDD 126
              L + +    DAG+Y+ +A +  G+   A++ L   +        TF +  S ++   
Sbjct: 59  RSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQ------KLTFREVVSPQEFKQ 112

Query: 127 GKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGK 186
           G+     CR+ + PAP V W +   +V     ++F++  +      +L+I+++   D G 
Sbjct: 113 GEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANN-----NLQILNINKSDEGI 167

Query: 187 YKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLVG 246
           Y+   + E         +    +  P           ++     ++    ++   CR  G
Sbjct: 168 YRCEGRVEARGEIDFRDIIVIVNVPPA------ISMPQKSFNATAERG-EEMTFSCRASG 220

Query: 247 EPEPTISW 254
            PEP ISW
Sbjct: 221 SPEPAISW 228

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score =  124 bits (313), Expect = 2e-34
 Identities = 33/201 (16%), Positives = 76/201 (37%), Gaps = 20/201 (9%)

Query: 8   APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKY 67
             +F +    ++  +G      C++  +P P + W     +++  +              
Sbjct: 98  KLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNN--- 154

Query: 68  LVALELDDVIETDAGLYKVKAKNK-MGEVAASINLNFSREQIDGLAPTF--LKKPSIRQE 124
              L++ ++ ++D G+Y+ + + +  GE+     +      I  + P     +K      
Sbjct: 155 ---LQILNINKSDEGIYRCEGRVEARGEIDFRDIIV-----IVNVPPAISMPQKSFNATA 206

Query: 125 DDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDA 184
           + G+ + F CR    P P + W  +G  ++E++++              L + ++   D 
Sbjct: 207 ERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSN------TELTVRNIINSDG 260

Query: 185 GKYKVTAKNELGESNATISLN 205
           G Y   A N+ GE      L 
Sbjct: 261 GPYVCRATNKAGEDEKQAFLQ 281

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212

 Score =  134 bits (339), Expect = 3e-39
 Identities = 44/193 (22%), Positives = 74/193 (38%), Gaps = 7/193 (3%)

Query: 8   APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKY 67
            P FT+ P  +    G    F CQ   +P+P IVW +   ++S     V++      +  
Sbjct: 6   PPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFD----DGS 61

Query: 68  LVALELDDV-IETDAGLYKVKAKNKMGEVAASINLN-FSREQIDGLAPTFLKKPSIRQED 125
              L +  +    D  +Y+  A N +GE++ S  L     +QI    PT    P ++  +
Sbjct: 62  GSVLRIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQLKVVE 121

Query: 126 DGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAG 185
             +     C    +P P + W    + V     +   I +       +L+I      D G
Sbjct: 122 RTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNG-RIKQLRSESIGALQIEQSEESDQG 180

Query: 186 KYKVTAKNELGES 198
           KY+  A N  G  
Sbjct: 181 KYECVATNSAGTR 193

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212

 Score =  106 bits (266), Expect = 2e-28
 Identities = 35/144 (24%), Positives = 53/144 (36%), Gaps = 8/144 (5%)

Query: 112 APTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYF 171
            P F + P  +    G    F C+   DP P ++W+  G +V   +      D    S  
Sbjct: 6   PPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGS-- 63

Query: 172 ASLEIIDV-TIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQ 230
             L I  + T  D   Y+  A N +GE + +  L    +D    G    P     P  K 
Sbjct: 64  -VLRIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIPRG---FPTIDMGPQLKV 119

Query: 231 SDDDLNDIVIECRLVGEPEPTISW 254
            +       + C   G P+P I+W
Sbjct: 120 VERT-RTATMLCAASGNPDPEITW 142

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212

 Score = 65.2 bits (159), Expect = 5e-13
 Identities = 23/95 (24%), Positives = 36/95 (37%), Gaps = 3/95 (3%)

Query: 8   APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKY 67
            P+    PQL+  +        C    NP P+I WF+    +               +  
Sbjct: 108 FPTIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIG 167

Query: 68  LVALELDDVIETDAGLYKVKAKNKMGE-VAASINL 101
             AL+++   E+D G Y+  A N  G   +A  NL
Sbjct: 168 --ALQIEQSEESDQGKYECVATNSAGTRYSAPANL 200

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score =  137 bits (346), Expect = 2e-38
 Identities = 43/257 (16%), Positives = 75/257 (29%), Gaps = 21/257 (8%)

Query: 7   FAPSFTQKPQLRQEDEGNRLIFECQLLC-NPKPDIVWFRGETQLSEDTRTVMKTT--PIG 63
           +  +   K   +   EG     +C L    PKP I W +  +    +            G
Sbjct: 99  YLIASPAKTHEKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAG 158

Query: 64  TNKYLVALELDDVIETDAGLYKVKAKNKMGE---VAASINLNFSREQIDGL--APTFLKK 118
            +  L    +     +D   Y   AKN   +   V     +    +   G    P     
Sbjct: 159 PDGNLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQYV 218

Query: 119 PSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIID 178
                   G   +  C   ++P     +  +G  V  +   + +           L    
Sbjct: 219 SKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSG--KRLLFKT 276

Query: 179 VTIEDAGKYKVTAKNELGESNA-TISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLND 237
              ED G Y     N +G+    ++ L   S           P + ++P          D
Sbjct: 277 TLPEDEGVYTCEVDNGVGKPQKHSLKLTVVS----------APKYEQKPEKVIVVKQGQD 326

Query: 238 IVIECRLVGEPEPTISW 254
           + I C++ G P P + W
Sbjct: 327 VTIPCKVTGLPAPNVVW 343

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score =  120 bits (301), Expect = 5e-32
 Identities = 43/258 (16%), Positives = 75/258 (29%), Gaps = 24/258 (9%)

Query: 6   DFAPSFTQKPQLRQEDEGNRLIFECQLLCNPKP-DIVWFRGETQLSEDTRTVMKTTPIGT 64
           D  P    +P      E N  + EC +  N +     W +     +            G+
Sbjct: 4   DKYPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGS 63

Query: 65  NKYLVALELDDVIETDAGLYKVKAKNKMGEVA-ASINLNFSREQIDGLAPTFLKKPSIRQ 123
                 L       +D G Y+  A+   G  +   I+   +             K   + 
Sbjct: 64  ------LVFLRPQASDEGHYQCFAETPAGVASSRVISFRKTY------LIASPAKTHEKT 111

Query: 124 EDDGKRLLFECRI-QADPAPTVIWSHSGVQVKEDKRH-----KFSIDKDGHSYFASLEII 177
             +G+    +C +  A P P + W         +        + +   DG+ YF  +   
Sbjct: 112 PIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKE 171

Query: 178 DVTIEDAGKYKVTAKNELGESNATIS-LNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLN 236
           DV   D  KY  TAKN   +    +             G   +PV         +    +
Sbjct: 172 DV--SDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQYVSKDMMAKAG-D 228

Query: 237 DIVIECRLVGEPEPTISW 254
             +I C     P    ++
Sbjct: 229 VTMIYCMYGSNPMGYPNY 246

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score =  119 bits (300), Expect = 9e-32
 Identities = 39/203 (19%), Positives = 69/203 (33%), Gaps = 20/203 (9%)

Query: 5   EDFAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGT 64
               P      +      G+  +  C    NP     +F+    ++ +    +      +
Sbjct: 209 YKGEPVPQYVSKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTS 268

Query: 65  NKYLVALELDDVIETDAGLYKVKAKNKMGEV-AASINLNFSREQIDGLAPTFLKKP-SIR 122
            K    L     +  D G+Y  +  N +G+    S+ L          AP + +KP  + 
Sbjct: 269 GK---RLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVVS------APKYEQKPEKVI 319

Query: 123 QEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIE 182
               G+ +   C++   PAP V+WSH+   +   +     +   G      L I  V   
Sbjct: 320 VVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGGRAT---VTDSG------LVIKGVKNG 370

Query: 183 DAGKYKVTAKNELGESNATISLN 205
           D G Y   A NE G+      + 
Sbjct: 371 DKGYYGCRATNEHGDKYFETLVQ 393

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212

 Score =  130 bits (328), Expect = 2e-37
 Identities = 47/197 (23%), Positives = 79/197 (40%), Gaps = 13/197 (6%)

Query: 8   APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKY 67
            P   +KPQ +    G    F C    +P P IVW +   ++S            G    
Sbjct: 6   PPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGG--- 62

Query: 68  LVALELDDV-IETDAGLYKVKAKNKMGE-VAASINLN-FSREQIDGLAPTFLKKPSIRQE 124
           +  L ++ V    D   Y+  A+N +G+ V+A   L  +  ++     P   + P  R  
Sbjct: 63  ISILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVI 122

Query: 125 DDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDA 184
           + G  +L  C+   +P P + W  +  +V           KDG      L+I +   ED 
Sbjct: 123 EVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRY--SLKDG-----FLQIENSREEDQ 175

Query: 185 GKYKVTAKNELGESNAT 201
           GKY+  A+N +G  ++ 
Sbjct: 176 GKYECVAENSMGTEHSK 192

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212

 Score = 95.6 bits (238), Expect = 3e-24
 Identities = 34/147 (23%), Positives = 65/147 (44%), Gaps = 12/147 (8%)

Query: 112 APTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYF 171
            P  ++KP  +    G    F C  + DP P+++W  +G +V   +     +++ G    
Sbjct: 6   PPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISI 65

Query: 172 ASLEIIDVTI-EDAGKYKVTAKNELGES---NATISLNFDSDDAPVPGEGTKPVFTERPV 227
             L I  V    D   Y+  A+N +G++   +AT+++               PV T+ P 
Sbjct: 66  --LRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGF-----PVITQGPG 118

Query: 228 TKQSDDDLNDIVIECRLVGEPEPTISW 254
           T+  +   + +++ C+ +G P P I W
Sbjct: 119 TRVIEVG-HTVLMTCKAIGNPTPNIYW 144

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score =  134 bits (338), Expect = 2e-37
 Identities = 46/255 (18%), Positives = 87/255 (34%), Gaps = 32/255 (12%)

Query: 7   FAPSFTQKPQLRQE-DEGNRLIFECQLLC-NPKPDIVWFRGETQLSEDTRTVMKTTPIGT 64
           +  +F  + +       G  ++  C     + +    W   E    +D R  + +   G 
Sbjct: 100 YLENFKTRTRSTVSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPSYQDNRRFV-SQETGN 158

Query: 65  NKYLVALELDDVIETDAGLYKVKAKNKMGEV-----AASINLNFSREQIDGLAPTFLKKP 119
                 L +  V ++D G Y     N +           + L       +      ++ P
Sbjct: 159 ------LYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFP 212

Query: 120 SIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDV 179
                + G  +  EC    +P PT++W  +  +    K  +   +         LEI + 
Sbjct: 213 ETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKARRHKSNG-------ILEIPNF 265

Query: 180 TIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIV 239
             EDAG Y+  A+N  G++ A   L F +          +P + +         +   + 
Sbjct: 266 QQEDAGSYECVAENSRGKNVAKGQLTFYA----------QPNWVQIINDIHVAME-ESVF 314

Query: 240 IECRLVGEPEPTISW 254
            EC+  G P+PT  W
Sbjct: 315 WECKANGRPKPTYRW 329

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score =  118 bits (298), Expect = 1e-31
 Identities = 48/203 (23%), Positives = 82/203 (40%), Gaps = 22/203 (10%)

Query: 3   IAEDFAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPI 62
           + E       Q P+    ++G  +  EC  L NP P I+W R + +         K+  I
Sbjct: 200 MGEYEPKIEVQFPETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKARRHKSNGI 259

Query: 63  GTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIR 122
                   LE+ +  + DAG Y+  A+N  G+  A   L F         P +++  +  
Sbjct: 260 --------LEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYA------QPNWVQIINDI 305

Query: 123 QEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIE 182
                + + +EC+    P PT  W  +G  +    R +      G     +L I  V + 
Sbjct: 306 HVAMEESVFWECKANGRPKPTYRWLKNGDPLLTRDRIQIE---QG-----TLNITIVNLS 357

Query: 183 DAGKYKVTAKNELGESNATISLN 205
           DAG Y+  A+N+ G   ++  L+
Sbjct: 358 DAGMYQCVAENKHGVIFSSAELS 380

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score =  117 bits (295), Expect = 3e-31
 Identities = 55/255 (21%), Positives = 85/255 (33%), Gaps = 28/255 (10%)

Query: 8   APSFTQKPQ---LRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGT 64
            P F Q+P       + E  ++   C++  NPKP I W    T +             G+
Sbjct: 5   GPVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVD-GS 63

Query: 65  NKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSRE---QIDGLAPTFLKKPSI 121
              L+    +     DAG Y+  A N  G +        SRE   Q   L     +  S 
Sbjct: 64  ---LLINNPNK--TQDAGTYQCIATNSFGTIV-------SREAKLQFAYLENFKTRTRST 111

Query: 122 RQEDDGKRLLFECRI-QADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVT 180
                G+ ++  C         +  W  +     +D R  F   + G     +L I  V 
Sbjct: 112 VSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPSYQDNRR-FVSQETG-----NLYIAKVE 165

Query: 181 IEDAGKYKVTAKNELGESNATIS-LNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIV 239
             D G Y     N +               +  V GE    +  + P T  ++     + 
Sbjct: 166 KSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKG-TTVK 224

Query: 240 IECRLVGEPEPTISW 254
           +EC  +G P PTI W
Sbjct: 225 LECFALGNPVPTILW 239

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score = 74.1 bits (182), Expect = 1e-15
 Identities = 35/152 (23%), Positives = 58/152 (38%), Gaps = 24/152 (15%)

Query: 110 GLAPTFLKKPS---IRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKD 166
           G  P F+++PS      + + K++   C ++ +P P + W  +G  V      ++S+  D
Sbjct: 3   GSGPVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSV-VD 61

Query: 167 GHSYFASLEIIDVT-IEDAGKYKVTAKNELGE--SNATISLNFDSDDAPVPGEGTKPVFT 223
           G     SL I +    +DAG Y+  A N  G   S     L F               F 
Sbjct: 62  G-----SLLINNPNKTQDAGTYQCIATNSFGTIVSR-EAKLQF----------AYLENFK 105

Query: 224 ERPVTKQSDDDLNDIVIECRLV-GEPEPTISW 254
            R  +  S      +V+ C       E + +W
Sbjct: 106 TRTRSTVSVRRGQGMVLLCGPPPHSGELSYAW 137

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241

 Score =  130 bits (327), Expect = 4e-37
 Identities = 43/210 (20%), Positives = 80/210 (38%), Gaps = 17/210 (8%)

Query: 8   APSFTQKPQLRQED----EGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIG 63
           AP +T+  ++ ++       N + F C    NP P I W +   +   + R         
Sbjct: 11  APYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQ 70

Query: 64  TNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQ 123
                  L ++ V+ +D G Y    +NK G +  +  L+   E+           P+ + 
Sbjct: 71  QWS----LVMESVVPSDRGNYTCVVENKFGSIRQTYTLD-VLERSPHRPILQAGLPANQT 125

Query: 124 EDDGKRLLFECRIQADPAPTVIWSH----SGVQVKEDKRHKFSIDKDGHSYFA----SLE 175
              G  + F C++ +D  P + W      +G +V  D     ++ K   S        L 
Sbjct: 126 AVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLR 185

Query: 176 IIDVTIEDAGKYKVTAKNELGESNATISLN 205
           + +V+  D G+Y   A N +G +     L+
Sbjct: 186 LANVSERDGGEYLCRATNFIGVAEKAFWLS 215

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241

 Score = 98.5 bits (245), Expect = 4e-25
 Identities = 26/147 (17%), Positives = 54/147 (36%), Gaps = 13/147 (8%)

Query: 112 APTFLKKPSIRQED----DGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDG 167
           AP + +   + ++         + F C    +P P++ W  +G + + + R      +  
Sbjct: 11  APYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQ 70

Query: 168 HSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPV 227
                SL +  V   D G Y    +N+ G    T +L+        P      +    P 
Sbjct: 71  QW---SLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRP-----ILQAGLPA 122

Query: 228 TKQSDDDLNDIVIECRLVGEPEPTISW 254
            + +    +D+   C++  + +P I W
Sbjct: 123 NQTAVLG-SDVEFHCKVYSDAQPHIQW 148

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241

 Score = 64.2 bits (156), Expect = 2e-12
 Identities = 22/106 (20%), Positives = 40/106 (37%), Gaps = 7/106 (6%)

Query: 4   AEDFAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDT-------RTV 56
           +          P  +    G+ + F C++  + +P I W +                 TV
Sbjct: 110 SPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTV 169

Query: 57  MKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLN 102
           +K+    + +  V L L +V E D G Y  +A N +G    +  L+
Sbjct: 170 LKSWISESVEADVRLRLANVSERDGGEYLCRATNFIGVAEKAFWLS 215

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score =  132 bits (333), Expect = 1e-36
 Identities = 45/257 (17%), Positives = 79/257 (30%), Gaps = 36/257 (14%)

Query: 7   FAPSFTQKPQLRQE-DEGNRLIFECQL-LCNPKPDIVWFR-GETQLSEDTRTVMKTTPIG 63
           F   F+ + +   +  EG  ++F C      P     W                 +   G
Sbjct: 99  FLQEFSAEERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTG 158

Query: 64  TNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDG------LAPTFLK 117
                  L +     +D G Y   A + +  +  S+   FS+  +              K
Sbjct: 159 N------LYIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAK 212

Query: 118 KPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEII 177
            P+      G+ +  EC    +P P + W       K D                 L I 
Sbjct: 213 FPADTYALTGQMVTLECFAFGNPVPQIKWR------KLDGSQTSKWLSSEPL----LHIQ 262

Query: 178 DVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLND 237
           +V  ED G Y+  A+N  G       +   +          +P + +     ++D   +D
Sbjct: 263 NVDFEDEGTYECEAENIKGRDTYQGRIIIHA----------QPDWLDVITDTEADIG-SD 311

Query: 238 IVIECRLVGEPEPTISW 254
           +   C   G+P P + W
Sbjct: 312 LRWSCVASGKPRPAVRW 328

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score =  116 bits (292), Expect = 9e-31
 Identities = 41/204 (20%), Positives = 67/204 (32%), Gaps = 25/204 (12%)

Query: 2   GIAEDFAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTP 61
              +       + P       G  +  EC    NP P I W + +   +    +      
Sbjct: 201 DARQYAPSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSKWLSSEPL-- 258

Query: 62  IGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSI 121
                    L + +V   D G Y+ +A+N  G       +           P +L   + 
Sbjct: 259 ---------LHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIHA------QPDWLDVITD 303

Query: 122 RQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTI 181
            + D G  L + C     P P V W   G  +    R + S    G      L    + +
Sbjct: 304 TEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVS---GG-----ELRFSKLVL 355

Query: 182 EDAGKYKVTAKNELGESNATISLN 205
           ED+G Y+  A+N+ G   A+  L 
Sbjct: 356 EDSGMYQCVAENKHGTVYASAELT 379

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score =  114 bits (286), Expect = 7e-30
 Identities = 52/261 (19%), Positives = 87/261 (33%), Gaps = 35/261 (13%)

Query: 7   FAPSFTQKPQ---LRQEDEGNRLIFECQLLCNPKPDIVWFRGETQL--SEDTRTVMKTTP 61
           + P F ++P      +     ++   C+   NP     W    T+L    D+R  +    
Sbjct: 3   YGPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVA-- 60

Query: 62  IGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSRE---QIDGLAPTFLKK 118
            G       +  + V   DAG Y+  A N  G V        SRE   +   L     ++
Sbjct: 61  -GDL-----VISNPVKAKDAGSYQCVATNARGTVV-------SREASLRFGFLQEFSAEE 107

Query: 119 PSIRQEDDGKRLLFECRI-QADPAPTVIWSHSG--VQVKEDKRHKFSIDKDGHSYFASLE 175
               +  +G  ++F C      PA +  W  +     +  D R +F     G     +L 
Sbjct: 108 RDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGR-RFVSQTTG-----NLY 161

Query: 176 IIDVTIEDAGKYKVTAKNELGESNATISLNF--DSDDAPVPGEGTKPVFTERPVTKQSDD 233
           I      D G Y   A + +     ++   F   S  A    +    +  + P    +  
Sbjct: 162 IAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYALT 221

Query: 234 DLNDIVIECRLVGEPEPTISW 254
               + +EC   G P P I W
Sbjct: 222 G-QMVTLECFAFGNPVPQIKW 241

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231

 Score =  126 bits (319), Expect = 5e-36
 Identities = 46/223 (20%), Positives = 85/223 (38%), Gaps = 25/223 (11%)

Query: 3   IAEDF---------APSFTQKPQLRQED----EGNRLIFECQLLCNPKPDIVWFRGETQL 49
           +AEDF         AP +T   ++ +        N + F C    NP P + W +   + 
Sbjct: 1   MAEDFVSENSNNKRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEF 60

Query: 50  SEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQID 109
            ++ R               +L ++ V+ +D G Y    +N+ G +  + +L+   E+  
Sbjct: 61  KQEHRIGGYKVRNQHW----SLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV-VERSR 115

Query: 110 GLAPTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIW----SHSGVQVKEDKRHKFSIDK 165
                    P+      G  + F C++ +D  P + W      +G +   D      + K
Sbjct: 116 HRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLK 175

Query: 166 DGH---SYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLN 205
                 S    L + +VT  DAG+Y     N +G++N +  L 
Sbjct: 176 HSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQANQSAWLT 218

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231

 Score = 98.8 bits (246), Expect = 3e-25
 Identities = 31/147 (21%), Positives = 53/147 (36%), Gaps = 13/147 (8%)

Query: 112 APTFLKKPSIRQED----DGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDG 167
           AP +     + +          + F C    +P PT+ W  +G + K++ R      ++ 
Sbjct: 15  APYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQ 74

Query: 168 HSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPV 227
           H    SL +  V   D G Y    +NE G  N T  L+        P      +    P 
Sbjct: 75  HW---SLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSRHRP-----ILQAGLPA 126

Query: 228 TKQSDDDLNDIVIECRLVGEPEPTISW 254
              +     D+   C++  + +P I W
Sbjct: 127 NASTVVG-GDVEFVCKVYSDAQPHIQW 152

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192

 Score =  125 bits (315), Expect = 7e-36
 Identities = 48/201 (23%), Positives = 78/201 (38%), Gaps = 22/201 (10%)

Query: 4   AEDF--APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTP 61
           AE    AP  T   +           F C +   P+P+I W R +  +            
Sbjct: 1   AEKLPKAPVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTR-YSIRE 59

Query: 62  IGTNKYLVALELDDVIETDAGLYKVKAKNKMGE-VAASINLNFSREQIDGLAPTFLKKPS 120
            G       L +  V ++D G+Y   A N +G  V +   L         + P   + P 
Sbjct: 60  NGQL-----LTILSVEDSDDGIYCCTANNGVGGAVESCGALQVK------MKPKITRPPI 108

Query: 121 IRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVT 180
             +  +G + +  C    +P P+V W      ++E+ R    + + G     SL I +V 
Sbjct: 109 NVKIIEGLKAVLPCTTMGNPKPSVSWIKGDSALRENSRIA--VLESG-----SLRIHNVQ 161

Query: 181 IEDAGKYKVTAKNELGESNAT 201
            EDAG+Y+  AKN LG + + 
Sbjct: 162 KEDAGQYRCVAKNSLGTAYSK 182

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192

 Score = 95.6 bits (238), Expect = 2e-24
 Identities = 33/146 (22%), Positives = 58/146 (39%), Gaps = 21/146 (14%)

Query: 112 APTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYF 171
           AP              +   F C +++ P P + W+ + + +K     ++SI ++G    
Sbjct: 7   APVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDT-RYSIRENG---- 61

Query: 172 ASLEIIDVTIEDAGKYKVTAKNELGE---SNATISLNFDSDDAPVPGEGTKPVFTERPVT 228
             L I+ V   D G Y  TA N +G    S   + +              KP  T  P+ 
Sbjct: 62  QLLTILSVEDSDDGIYCCTANNGVGGAVESCGALQVK------------MKPKITRPPIN 109

Query: 229 KQSDDDLNDIVIECRLVGEPEPTISW 254
            +  +     V+ C  +G P+P++SW
Sbjct: 110 VKIIEG-LKAVLPCTTMGNPKPSVSW 134

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score =  127 bits (320), Expect = 2e-35
 Identities = 46/248 (18%), Positives = 84/248 (33%), Gaps = 22/248 (8%)

Query: 9   PSFTQKPQLRQEDEGNRLIFECQLLCNPK-PDIVWFRGETQLSEDTRTVMKTTPIGTNKY 67
                 P   +   G    F CQ+  + K  DI WF    +     +  +       +  
Sbjct: 3   LQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSS 62

Query: 68  LVALELDDVIETDAGLYKVKAKNKMGEVA-ASINLNFSREQIDGLAPTFLKKPSIRQEDD 126
              L + +    DAG+YK     + G  + A++N+   +         F   P+ ++  +
Sbjct: 63  --TLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQ------KLMFKNAPTPQEFKE 114

Query: 127 GKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGK 186
           G+  +  C + +   PT+IW H G  V   K  +F +  +       L+I  +   D G 
Sbjct: 115 GEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNN-----YLQIRGIKKTDEGT 169

Query: 187 YKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLVG 246
           Y+   +           +    +  P      +                  + + C   G
Sbjct: 170 YRCEGRILARGEINFKDIQVIVNVPPTV--QARQSIVNATANLGQ-----SVTLVCDADG 222

Query: 247 EPEPTISW 254
            PEPT+SW
Sbjct: 223 FPEPTMSW 230

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score =  113 bits (283), Expect = 3e-30
 Identities = 38/200 (19%), Positives = 74/200 (37%), Gaps = 14/200 (7%)

Query: 8   APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKY 67
              F   P  ++  EG   +  C ++ +  P I+W      +                  
Sbjct: 100 KLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNY--- 156

Query: 68  LVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQE--D 125
              L++  + +TD G Y+ + +          ++    + I  + PT   + SI     +
Sbjct: 157 ---LQIRGIKKTDEGTYRCEGRILARGEINFKDI----QVIVNVPPTVQARQSIVNATAN 209

Query: 126 DGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAG 185
            G+ +   C     P PT+ W+  G  ++ ++           S  + L I +V   D  
Sbjct: 210 LGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDS--SELTIRNVDKNDEA 267

Query: 186 KYKVTAKNELGESNATISLN 205
           +Y   A+N+ GE +A+I L 
Sbjct: 268 EYVCIAENKAGEQDASIHLK 287

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189

 Score =  124 bits (312), Expect = 2e-35
 Identities = 31/200 (15%), Positives = 75/200 (37%), Gaps = 18/200 (9%)

Query: 8   APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKY 67
             +F +    ++  +G      C++  +P P + W     +++  +              
Sbjct: 2   MLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNN--- 58

Query: 68  LVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTF--LKKPSIRQED 125
              L++ ++ ++D G+Y+ + + +        ++      I  + P     +K      +
Sbjct: 59  ---LQILNINKSDEGIYRCEGRVEARGEIDFRDI----IVIVNVPPAISMPQKSFNATAE 111

Query: 126 DGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAG 185
            G+ + F CR    P P + W  +G  ++E+++  + +          L + ++   D G
Sbjct: 112 RGEEMTFSCRASGSPEPAISWFRNGKLIEENEK--YILKGSNT----ELTVRNIINSDGG 165

Query: 186 KYKVTAKNELGESNATISLN 205
            Y   A N+ GE      L 
Sbjct: 166 PYVCRATNKAGEDEKQAFLQ 185

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189

 Score = 98.7 bits (246), Expect = 1e-25
 Identities = 30/143 (20%), Positives = 55/143 (38%), Gaps = 12/143 (8%)

Query: 112 APTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYF 171
             TF +  S ++   G+     CR+ + PAP V W +   +V     ++F++  +     
Sbjct: 2   MLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANN---- 57

Query: 172 ASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQS 231
            +L+I+++   D G Y+   + E         +    +  P      K         +  
Sbjct: 58  -NLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGE-- 114

Query: 232 DDDLNDIVIECRLVGEPEPTISW 254
                ++   CR  G PEP ISW
Sbjct: 115 -----EMTFSCRASGSPEPAISW 132

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score =  128 bits (323), Expect = 5e-35
 Identities = 52/258 (20%), Positives = 81/258 (31%), Gaps = 35/258 (13%)

Query: 7   FAPSFTQKPQLRQE-DEGNRLIFECQLLC-NPKPDIVWFRGETQLSEDTRTVMKTTPIGT 64
            +P + ++        EG  L  +C      P P I W     +     + V      G 
Sbjct: 114 KSPLWPKENLDPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPITQDKRV-SQGHNGD 172

Query: 65  NKYLVALELDDVIETDA-GLYKVKAKNKMGEVA---ASINLNFSREQIDGLAPTFLKKPS 120
                 L   +V+  D    Y   A+              L     +           P 
Sbjct: 173 ------LYFSNVMLQDMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQ 226

Query: 121 IRQED----DGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEI 176
                     G  LL EC     P P + W   G  +  DK           ++  +L I
Sbjct: 227 GTASSQMVLRGMDLLLECIASGVPTPDIAWYKKGGDLPSDKAKF-------ENFNKALRI 279

Query: 177 IDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLN 236
            +V+ ED+G+Y   A N++G    TIS+   +           P + + P          
Sbjct: 280 TNVSEEDSGEYFCLASNKMGSIRHTISVRVKA----------APYWLDEPKNLILAPG-E 328

Query: 237 DIVIECRLVGEPEPTISW 254
           D  + CR  G P+PT+ W
Sbjct: 329 DGRLVCRANGNPKPTVQW 346

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score =  121 bits (305), Expect = 2e-32
 Identities = 46/203 (22%), Positives = 70/203 (34%), Gaps = 22/203 (10%)

Query: 6   DFAPSFTQKPQLRQE---DEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPI 62
           +  PSF              G  L+ EC     P PDI W++    L  D          
Sbjct: 217 ERTPSFMYPQGTASSQMVLRGMDLLLECIASGVPTPDIAWYKKGGDLPSDKAKFENFNKA 276

Query: 63  GTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIR 122
                   L + +V E D+G Y   A NKMG +  +I++          AP +L +P   
Sbjct: 277 --------LRITNVSEEDSGEYFCLASNKMGSIRHTISVRVK------AAPYWLDEPKNL 322

Query: 123 QEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIE 182
               G+     CR   +P PTV W  +G  ++    +             ++   D  I 
Sbjct: 323 ILAPGEDGRLVCRANGNPKPTVQWMVNGEPLQSAPPNPNREVAGD-----TIIFRDTQIS 377

Query: 183 DAGKYKVTAKNELGESNATISLN 205
               Y+    NE G   A   ++
Sbjct: 378 SRAVYQCNTSNEHGYLLANAFVS 400

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score =  109 bits (275), Expect = 3e-28
 Identities = 48/255 (18%), Positives = 83/255 (32%), Gaps = 22/255 (8%)

Query: 8   APSFTQKPQLRQE-DEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNK 66
            P+ T++       D  + ++ EC+   NP P   W R     +      +         
Sbjct: 16  PPTITKQSAKDHIVDPRDNILIECEAKGNPAPSFHWTRNSRFFNIAKDPRVSMRRRSGTL 75

Query: 67  YLVALELDDVIETDAGLYKVKAKNKMGEVA-ASINLNFSREQIDGLAPTFLKKPSIRQE- 124
            +         E   G Y+  A+NK G      I L  S+      +P + K+       
Sbjct: 76  VIDFRS-GGRPEEYEGEYQCFARNKFGTALSNRIRLQVSK------SPLWPKENLDPVVV 128

Query: 125 DDGKRLLFECRIQA-DPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIED 183
            +G  L  +C      P+P + W  S ++     +   S   +G      L   +V ++D
Sbjct: 129 QEGAPLTLQCNPPPGLPSPVIFWMSSSMEPITQDKR-VSQGHNG-----DLYFSNVMLQD 182

Query: 184 A-GKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDL---NDIV 239
               Y   A+     +       F        G   +      P    S   +    D++
Sbjct: 183 MQTDYSCNARFHFTHTIQQ-KNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLL 241

Query: 240 IECRLVGEPEPTISW 254
           +EC   G P P I+W
Sbjct: 242 LECIASGVPTPDIAW 256

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207

 Score =  122 bits (308), Expect = 1e-34
 Identities = 36/211 (17%), Positives = 80/211 (37%), Gaps = 25/211 (11%)

Query: 9   PSFTQKPQLRQEDEGNRLIFECQ-LLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKY 67
             FT+     +  E  ++ F  Q    +    + +   E ++ E  +  M       N  
Sbjct: 3   DPFTKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDR---NTG 59

Query: 68  LVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFS-------------REQIDGLAPT 114
           ++ + ++ + + D G Y  + ++      +++ L                +E I    P 
Sbjct: 60  IIEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPH 119

Query: 115 FLKKPSIRQEDDGKRLLFECRIQADPAPTVI-WSHSGVQVKEDKRHKFSIDKDGHSYFAS 173
           F++  S         +L +C++      T I W     ++  D++H F           +
Sbjct: 120 FVEYLSWEV-TGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFK------DGICT 172

Query: 174 LEIIDVTIEDAGKYKVTAKNELGESNATISL 204
           L I + + +DAG Y+V  K++ G+  + + L
Sbjct: 173 LLITEFSKKDAGIYEVILKDDRGKDKSRLKL 203

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207

 Score = 94.2 bits (234), Expect = 7e-24
 Identities = 22/153 (14%), Positives = 54/153 (35%), Gaps = 15/153 (9%)

Query: 113 PTFLKKPSIRQEDDGKRLLFE-CRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYF 171
             F K     +  +  ++ F     +      V +  +  ++ E  ++K  ID++     
Sbjct: 3   DPFTKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGII- 61

Query: 172 ASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFDSDDA---------PVPGEGTKPVF 222
             + +  +  ED G Y    ++    +++T+ L  D                     P F
Sbjct: 62  -EMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHF 120

Query: 223 TERPVTKQSDDDLNDIVIECRLVGE-PEPTISW 254
            E    + + +   +++++C++     E  I W
Sbjct: 121 VEYLSWEVTGEC--NVLLKCKVANIKKETHIVW 151

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score =  127 bits (321), Expect = 4e-34
 Identities = 40/251 (15%), Positives = 74/251 (29%), Gaps = 25/251 (9%)

Query: 8   APSFTQKPQLRQEDEGNRLIFECQLLCNPKP-DIVWFRGETQLSEDTRTVMKTTPIGTNK 66
            P  +         EG      C +          W R  +Q     +           +
Sbjct: 211 VPVVSVSKASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYE 270

Query: 67  YLVALELDDVIETDAGLYKVKAKNKMGEVAASINLN-FSREQIDGLAPTFLKKPSIRQED 125
               L +      D+G++   A N  G    +  L    +  I      F    +    +
Sbjct: 271 RQATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVVDKGFI----NIFPMINTTVFVN 326

Query: 126 DGKRLLFECRIQADPAPTVI-WSHSGVQVKED-KRHKFSIDKDGHSYFASLEIIDVTIED 183
           DG+ +      +A P P    W +      +  + +  S ++    Y + L +  +   +
Sbjct: 327 DGENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSELHLTRLKGTE 386

Query: 184 AGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECR 243
            G Y     N    +    ++  +          TKP              L + +++C 
Sbjct: 387 GGTYTFLVSNSDVNAAIAFNVYVN----------TKPEILTYD-------RLVNGMLQCV 429

Query: 244 LVGEPEPTISW 254
             G PEPTI W
Sbjct: 430 AAGFPEPTIDW 440

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score =  112 bits (281), Expect = 1e-28
 Identities = 33/208 (15%), Positives = 60/208 (28%), Gaps = 21/208 (10%)

Query: 7   FAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPD-IVWFRGETQLSEDTRTVMKTTPIGTN 65
           F   F         ++G  +    +    PKP+   W       ++      K+      
Sbjct: 312 FINIFPMINTTVFVNDGENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSENESNI 371

Query: 66  KYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQED 125
           +Y+  L L  +  T+ G Y     N     A + N+                KP I   D
Sbjct: 372 RYVSELHLTRLKGTEGGTYTFLVSNSDVNAAIAFNV------------YVNTKPEILTYD 419

Query: 126 DGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSID--------KDGHSYFASLEII 177
                + +C     P PT+ W       +        +D                   I 
Sbjct: 420 RLVNGMLQCVAAGFPEPTIDWYFCPGTEQRCSASVLPVDVQTLNSSGPPFGKLVVQSSID 479

Query: 178 DVTIEDAGKYKVTAKNELGESNATISLN 205
               +  G  +  A N++G+++A  +  
Sbjct: 480 SSAFKHNGTVECKAYNDVGKTSAYFNFA 507

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 75.9 bits (186), Expect = 6e-16
 Identities = 27/249 (10%), Positives = 50/249 (20%), Gaps = 40/249 (16%)

Query: 8   APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKY 67
            PS            G+ +   C         + W         +               
Sbjct: 36  PPSIHPGKSDLIVRVGDEIRLLCT----DPGFVKWTF-------EILDETNENKQNE--- 81

Query: 68  LVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDG 127
                 +    T+ G Y    K+ +     SI +                        + 
Sbjct: 82  ---WITEKAEATNTGKYTCTNKHGLS---NSIYVFVRD------PAKLFLVDRSLYGKED 129

Query: 128 KRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTI-EDAGK 186
              L  C +  DP  T             K  +F  D         + I  V        
Sbjct: 130 NDTLVRCPL-TDPEVTNYSLKGCQGKPLPKDLRFIPDPKAG-----IMIKSVKRAYHRLC 183

Query: 187 YKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLVG 246
              +   E       +S  F     P          ++     +  ++     + C +  
Sbjct: 184 LHCSVDQEGKSV---LSEKFILKVRPAFKAVPVVSVSKASYLLREGEEF---TVTCTIKD 237

Query: 247 EPEPT-ISW 254
                  +W
Sbjct: 238 VSSSVYSTW 246

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 62.4 bits (151), Expect = 2e-11
 Identities = 26/179 (14%), Positives = 49/179 (27%), Gaps = 41/179 (22%)

Query: 80  DAGLY----KVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECR 135
            A  +     +  + + G    S++            P+     S      G  +   C 
Sbjct: 6   GAWDFLCVLLLLLRVQTGSSQPSVSPGEPS------PPSIHPGKSDLIVRVGDEIRLLCT 59

Query: 136 IQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNEL 195
                   V W+   +    + +                        + GKY  T K+ L
Sbjct: 60  DP----GFVKWTFEILDETNENKQN------------EWITEKAEATNTGKYTCTNKHGL 103

Query: 196 GESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLVGEPEPTISW 254
             S   I +     D        K    +R +  + D+   D ++ C  + +PE T   
Sbjct: 104 SNS---IYVFV--RDPA------KLFLVDRSLYGKEDN---DTLVRCP-LTDPEVTNYS 147

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191

 Score =  120 bits (303), Expect = 4e-34
 Identities = 37/198 (18%), Positives = 70/198 (35%), Gaps = 15/198 (7%)

Query: 9   PSFTQKPQLRQEDEGNRLIFECQLLCNPK-PDIVWFRGETQLSEDTRTVMKTTPIGTNKY 67
                 P   +   G    F CQ+  + K  DI WF    +     +  +       +  
Sbjct: 3   LQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSS 62

Query: 68  LVALELDDVIETDAGLYKVKAKNKMGEVA-ASINLNFSREQIDGLAPTFLKKPSIRQEDD 126
              L + +    DAG+YK     + G  + A++N+   +         F   P+ ++  +
Sbjct: 63  --TLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQ------KLMFKNAPTPQEFKE 114

Query: 127 GKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGK 186
           G+  +  C + +   PT+IW H G  V   K  +F +  +       L+I  +   D G 
Sbjct: 115 GEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNN-----YLQIRGIKKTDEGT 169

Query: 187 YKVTAKNELGESNATISL 204
           Y+   +           +
Sbjct: 170 YRCEGRILARGEINFKDI 187

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191

 Score = 87.2 bits (216), Expect = 3e-21
 Identities = 33/144 (22%), Positives = 55/144 (38%), Gaps = 14/144 (9%)

Query: 113 PTFLKKPSIRQEDDGKRLLFECRIQADP-APTVIWSHSGVQVKEDKRHKFSIDKDGHSYF 171
                 PS  +   G+   F C++  D     + W     +     + + S+  +     
Sbjct: 3   LQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDD-S 61

Query: 172 ASLEIIDVTIEDAGKYKVTAKNELGE-SNATISLNFDSDDAPVPGEGTKPVFTERPVTKQ 230
           ++L I +  I+DAG YK     E G  S AT+++              K +F   P  ++
Sbjct: 62  STLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQ----------KLMFKNAPTPQE 111

Query: 231 SDDDLNDIVIECRLVGEPEPTISW 254
             +   D VI C +V    PTI W
Sbjct: 112 FKEG-EDAVIVCDVVSSLPPTIIW 134

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191

 Score = 59.5 bits (144), Expect = 4e-11
 Identities = 13/94 (13%), Positives = 30/94 (31%), Gaps = 6/94 (6%)

Query: 8   APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKY 67
              F   P  ++  EG   +  C ++ +  P I+W      +                  
Sbjct: 100 KLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNY--- 156

Query: 68  LVALELDDVIETDAGLYKVKAKNKMGEVAASINL 101
              L++  + +TD G Y+ + +          ++
Sbjct: 157 ---LQIRGIKKTDEGTYRCEGRILARGEINFKDI 187

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389

 Score =  125 bits (315), Expect = 6e-34
 Identities = 42/207 (20%), Positives = 77/207 (37%), Gaps = 12/207 (5%)

Query: 9   PSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRG--ETQLSEDTRTVMKTTPIGTNK 66
           P   Q  +     E  ++   C     P P+I W R       +E  +++     +    
Sbjct: 2   PHIIQ-LKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQH 60

Query: 67  YLVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDD 126
              +L + DV  +D+G Y  +A +++G    S+ L+         AP F+   +I    +
Sbjct: 61  GSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIEY------APKFISNQTIYYSWE 114

Query: 127 GKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGK 186
           G  +   C ++++P  ++ W    + +             G      LEI   +  D G+
Sbjct: 115 GNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRK--MILEIAPTSDNDFGR 172

Query: 187 YKVTAKNELGESNATISLN-FDSDDAP 212
           Y  TA N +G       L   D   +P
Sbjct: 173 YNCTATNHIGTRFQEYILALADVPSSP 199

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389

 Score = 83.3 bits (206), Expect = 1e-18
 Identities = 30/149 (20%), Positives = 51/149 (34%), Gaps = 27/149 (18%)

Query: 118 KPSIRQEDD-----GKRLLFECRIQADPAPTVIWSHSGVQV-------KEDKRHKFSIDK 165
           +P I Q  +       ++   C  + +P P + W  +             D R +     
Sbjct: 1   QPHIIQLKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQH 60

Query: 166 DGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTER 225
              S    L I DV + D+G+Y   A + +G    ++ L+ +            P F   
Sbjct: 61  GSSS----LHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIEY----------APKFISN 106

Query: 226 PVTKQSDDDLNDIVIECRLVGEPEPTISW 254
                S +  N I I C +   P  +I W
Sbjct: 107 QTIYYSWEG-NPINISCDVKSNPPASIHW 134

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389

 Score = 75.6 bits (186), Expect = 5e-16
 Identities = 38/221 (17%), Positives = 69/221 (31%), Gaps = 36/221 (16%)

Query: 7   FAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNK 66
           +AP F     +    EGN +   C +  NP   I W R +  L     T +KT   G   
Sbjct: 99  YAPKFISNQTIYYSWEGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRK- 157

Query: 67  YLVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGL--APTFLKKPSIRQ- 123
             + LE+    + D G Y   A N +G       L      +  +  +P  +K   + Q 
Sbjct: 158 --MILEIAPTSDNDFGRYNCTATNHIGTRFQEYIL-----ALADVPSSPYGVKIIELSQT 210

Query: 124 ---------EDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASL 174
                    +  G   +   ++      + IW        +                  +
Sbjct: 211 TAKVSFNKPDSHGGVPIHHYQVDVKEVASEIWKIVRSHGVQ----------------TMV 254

Query: 175 EIIDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPG 215
            + ++      + +V A N  G+ + +    F +     P 
Sbjct: 255 VLNNLEPNTTYEIRVAAVNGKGQGDYSKIEIFQTLPVREPS 295

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score =  127 bits (320), Expect = 1e-33
 Identities = 43/259 (16%), Positives = 79/259 (30%), Gaps = 28/259 (10%)

Query: 4   AEDFAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIV--WFRGETQLSEDT---RTVMK 58
                          +   G +L+  C         I   W    ++        R +  
Sbjct: 220 GYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKT 279

Query: 59  TTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKK 118
            +     K+L  L +D V  +D GLY   A + +     S  +                 
Sbjct: 280 QSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHE---KPFVAFGSGM 336

Query: 119 PSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIID 178
            S+ +   G+R+    +    P P + W  +G+ ++ +   K      GH     L I++
Sbjct: 337 ESLVEATVGERVRIPAKYLGYPPPEIKWYKNGIPLESNHTIK-----AGHV----LTIME 387

Query: 179 VTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDL--N 236
           V+  D G Y V   N + +   +  ++              P   E+ +    D      
Sbjct: 388 VSERDTGNYTVILTNPISKEKQSHVVSLV--------VYVPPQIGEKSLISPVDSYQYGT 439

Query: 237 DIVIECRLVGEPEP-TISW 254
              + C +   P P  I W
Sbjct: 440 TQTLTCTVYAIPPPHHIHW 458

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score =  125 bits (314), Expect = 7e-33
 Identities = 35/213 (16%), Positives = 67/213 (31%), Gaps = 24/213 (11%)

Query: 8   APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVM---------- 57
            P  T +P + Q  E   +   C    +   ++ W++   Q        +          
Sbjct: 550 GPEITLQPDM-QPTEQESVSLWCTADRSTFENLTWYKLGPQPLPIHVGELPTPVCKNLDT 608

Query: 58  -----KTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLA 112
                 T    +   ++ +EL +    D G Y   A+++  +    +    +    + +A
Sbjct: 609 LWKLNATMFSNSTNDILIMELKNASLQDQGDYVCLAQDRKTKKRHCVVRQLTVL--ERVA 666

Query: 113 PTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFA 172
           PT       +    G+ +   C    +P P ++W      + ED                
Sbjct: 667 PTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGN------R 720

Query: 173 SLEIIDVTIEDAGKYKVTAKNELGESNATISLN 205
           +L I  V  ED G Y   A + LG +       
Sbjct: 721 NLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFI 753

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score =  121 bits (303), Expect = 2e-31
 Identities = 42/294 (14%), Positives = 81/294 (27%), Gaps = 62/294 (21%)

Query: 9   PSFTQKPQLRQED---EGNRLIFECQLLCNPKPD-IVWFRGETQLSEDTRTVMKT----- 59
           P   +K  +   D    G      C +   P P  I W+    +   +  +   +     
Sbjct: 421 PQIGEKSLISPVDSYQYGTTQTLTCTVYAIPPPHHIHWYWQLEEECANEPSQAVSVTNPY 480

Query: 60  -----------------------TPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVA 96
                                    +   K      L       + LYK +A NK+G   
Sbjct: 481 PCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKTVSTLVIQAANVSALYKCEAVNKVGRGE 540

Query: 97  ASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKED 156
             I+ + +R       P    +P + Q  + + +   C         + W   G Q    
Sbjct: 541 RVISFHVTR------GPEITLQPDM-QPTEQESVSLWCTADRSTFENLTWYKLGPQPLPI 593

Query: 157 KRHKF----------------SIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNA 200
              +                 ++  +  +    +E+ + +++D G Y   A++   +   
Sbjct: 594 HVGELPTPVCKNLDTLWKLNATMFSNSTNDILIMELKNASLQDQGDYVCLAQDRKTKKRH 653

Query: 201 TISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLVGEPEPTISW 254
            +       +         P  T      Q+      I + C   G P P I W
Sbjct: 654 CVVRQLTVLERV------APTITGNL-ENQTTSIGESIEVSCTASGNPPPQIMW 700

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score =  117 bits (295), Expect = 3e-30
 Identities = 31/247 (12%), Positives = 61/247 (24%), Gaps = 19/247 (7%)

Query: 8   APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKY 67
            P  + +  +        L   C+     + D+ W     Q   + R  +     G    
Sbjct: 31  LPRLSIQKDILTIKANTTLQITCR----GQRDLDWLWPNNQSGSEQRVEVTECSDGLFCK 86

Query: 68  LVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDG 127
              L +  VI  D G YK   +         + +          + +         E+  
Sbjct: 87  T--LTIPKVIGNDTGAYKCFYRETDLASVIYVYVQ-DYRSPFIASVSDQHGVVYITENKN 143

Query: 128 KRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKY 187
           K ++  C          + +    +      ++ S D           I    I  AG  
Sbjct: 144 KTVVIPCLGSISNLNVSLCARYPEKRFVPDGNRISWDSKKG-----FTIPSYMISYAGMV 198

Query: 188 KVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLVGE 247
              AK       + + +             +        +     + L   V+ C    E
Sbjct: 199 FCEAKINDESYQSIMYIVVVVGYRIYDVVLSPS----HGIELSVGEKL---VLNCTARTE 251

Query: 248 PEPTISW 254
               I +
Sbjct: 252 LNVGIDF 258

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score =  117 bits (295), Expect = 3e-30
 Identities = 30/252 (11%), Positives = 73/252 (28%), Gaps = 22/252 (8%)

Query: 9   PSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYL 68
            S         E++   ++  C    +     +  R   +        +           
Sbjct: 129 VSDQHGVVYITENKNKTVVIPCLGSISNLNVSLCARYPEKRFVPDGNRISWDSKKG---- 184

Query: 69  VALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDGK 128
               +   + + AG+   +AK       + + +         +    L      +   G+
Sbjct: 185 --FTIPSYMISYAGMVFCEAKINDESYQSIMYIVV--VVGYRIYDVVLSPSHGIELSVGE 240

Query: 129 RLLFECRIQADPAPTVIWS--HSGVQVKEDK----RHKFSIDKDGHSYFASLEIIDVTIE 182
           +L+  C  + +    + ++  +   + +  K      K     +   + ++L I  VT  
Sbjct: 241 KLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRS 300

Query: 183 DAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIEC 242
           D G Y   A + L     +  +        V  +      +      ++      + I  
Sbjct: 301 DQGLYTCAASSGLMTKKNSTFVR-------VHEKPFVAFGSGMESLVEATVG-ERVRIPA 352

Query: 243 RLVGEPEPTISW 254
           + +G P P I W
Sbjct: 353 KYLGYPPPEIKW 364

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 97.1 bits (241), Expect = 4e-23
 Identities = 28/175 (16%), Positives = 49/175 (28%), Gaps = 20/175 (11%)

Query: 80  DAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQAD 139
              L+             S++L+          P    +  I        L   CR Q  
Sbjct: 8   AVALWLCVETRAASVGLPSVSLD---------LPRLSIQKDILTIKANTTLQITCRGQ-- 56

Query: 140 PAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESN 199
               + W     Q   ++R + +   DG  +  +L I  V   D G YK   +     S 
Sbjct: 57  --RDLDWLWPNNQSGSEQRVEVTECSDGL-FCKTLTIPKVIGNDTGAYKCFYRETDLASV 113

Query: 200 ATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLVGEPEPTISW 254
             + +  D     +       V  +  V   +++    +VI C            
Sbjct: 114 IYVYVQ-DYRSPFIA-----SVSDQHGVVYITENKNKTVVIPCLGSISNLNVSLC 162

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 71.7 bits (175), Expect = 2e-14
 Identities = 26/100 (26%), Positives = 40/100 (40%), Gaps = 7/100 (7%)

Query: 3   IAEDFAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPI 62
           + E  AP+ T   + +    G  +   C    NP P I+WF+    L ED+  V+K    
Sbjct: 661 VLERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKD--- 717

Query: 63  GTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLN 102
           G       L +  V + D GLY  +A + +G         
Sbjct: 718 GNRN----LTIRRVRKEDEGLYTCQACSVLGCAKVEAFFI 753

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score =  123 bits (309), Expect = 3e-33
 Identities = 43/259 (16%), Positives = 80/259 (30%), Gaps = 30/259 (11%)

Query: 7   FAPSFTQKPQLRQEDEGNRLIFECQL---LCNPKPDIVWFRGETQL---SEDTRTVMKTT 60
            A  +           GN  + +C +   + +    + W   E +      +        
Sbjct: 102 VAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVL 161

Query: 61  PIGTNKYLVALELDDVIETDA-GLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKP 119
           P G       L + +V   D    Y+ + K+++                + ++ +  + P
Sbjct: 162 PSGE------LHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTP 215

Query: 120 SIRQED----DGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLE 175
           ++ Q+         +   C  Q  PAP+  W          +    +      S   +L 
Sbjct: 216 ALVQKPLELMVAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVS--GTLI 273

Query: 176 IIDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDL 235
           I D  +ED+GKY     N +G  +    L   +                 P T+  D   
Sbjct: 274 IKDAVVEDSGKYLCVVNNSVGGESVETVLTVTA----------PLSAKIDPPTQTVDFG- 322

Query: 236 NDIVIECRLVGEPEPTISW 254
              V  C+  G P  T+SW
Sbjct: 323 RPAVFTCQYTGNPIKTVSW 341

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score =  112 bits (282), Expect = 2e-29
 Identities = 37/198 (18%), Positives = 65/198 (32%), Gaps = 25/198 (12%)

Query: 8   APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKY 67
            P+  QKP   +    + +   C     P P   W++     +     V+       +  
Sbjct: 214 TPALVQKPL--ELMVAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSG- 270

Query: 68  LVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDG 127
              L + D +  D+G Y     N +G  +    L  +         +    P  +  D G
Sbjct: 271 --TLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVT------APLSAKIDPPTQTVDFG 322

Query: 128 KRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKY 187
           +  +F C+   +P  TV W   G  +   +                L I  V  ED G Y
Sbjct: 323 RPAVFTCQYTGNPIKTVSWMKDGKAIGHSES--------------VLRIESVKKEDKGMY 368

Query: 188 KVTAKNELGESNATISLN 205
           +   +N+   + A+  L 
Sbjct: 369 QCFVRNDRESAEASAELK 386

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score =  106 bits (267), Expect = 3e-27
 Identities = 49/259 (18%), Positives = 85/259 (32%), Gaps = 27/259 (10%)

Query: 8   APSFTQKPQLRQE-DEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNK 66
            P F ++P  R +         EC+   NP P+I+W R +     D   + + +  G   
Sbjct: 3   GPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLV 62

Query: 67  YLVALELDDVIETDAGLYKVKAKNKMGEVA-ASINLNFSREQIDGLAPTFLKKPSIRQED 125
           +      D   E  A +Y   A+N+ G +    +++          A  +    +     
Sbjct: 63  FPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVV------AQYYEADVNKEHVI 116

Query: 126 DGKRLLFECRI---QADPAPTVIWSHSGVQVKEDKRH---KFSIDKDGHSYFASLEIIDV 179
            G   + +C I    AD    V W     +          K+ +   G      L I +V
Sbjct: 117 RGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSG-----ELHIREV 171

Query: 180 TIEDA-GKYKVTAKNELGES---NATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDL 235
             ED    Y+   K+ L      +AT      ++          P   ++P+        
Sbjct: 172 GPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAP-RTPALVQKPLELMVAH-- 228

Query: 236 NDIVIECRLVGEPEPTISW 254
             I + C   G P P+  W
Sbjct: 229 -TISLLCPAQGFPAPSFRW 246

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score =  123 bits (309), Expect = 2e-32
 Identities = 37/254 (14%), Positives = 67/254 (26%), Gaps = 42/254 (16%)

Query: 6   DFAPSFTQKPQLRQEDEGNRLIFECQLL-CNPKPDIVWFRGETQLSEDTRTVMKTTPIGT 64
           D   +            G  L   C+ +  N    + W      L E     M T     
Sbjct: 225 DLNQTPQTTLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNR 284

Query: 65  NKYLVA-LELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQ 123
               +    +  V   D G Y   +     +   S  +         +   F+   +  +
Sbjct: 285 TMIRILFAFVSSVARNDTGYYTCSSSKHPSQ---SALVTI-------VEKGFINATNSSE 334

Query: 124 E---DDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVT 180
           +   D  +   F  R +A P     W+ S      +++              S+      
Sbjct: 335 DYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKG--------LDNGYSISKFCNH 386

Query: 181 IEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVI 240
               G+Y   A+N+  +     +LN       +     KP               +    
Sbjct: 387 KHQPGEYIFHAENDDAQFTKMFTLN-------IR---RKPQVLAEA---------SASQA 427

Query: 241 ECRLVGEPEPTISW 254
            C   G P P+ +W
Sbjct: 428 SCFSDGYPLPSWTW 441

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score =  104 bits (260), Expect = 8e-26
 Identities = 38/251 (15%), Positives = 79/251 (31%), Gaps = 40/251 (15%)

Query: 8   APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKY 67
           +     +    + D    +  +  +        +W    + L+      +       N+ 
Sbjct: 48  SSGTVYEAAAVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDL------QNRG 101

Query: 68  LVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDG 127
           +V++ +  + ET AG Y +  +++         +      I       L++P  R+ ++ 
Sbjct: 102 VVSMVILKMTETQAGEYLLFIQSEATNYTILFTV-----SIRNTLLYTLRRPYFRKMEN- 155

Query: 128 KRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKY 187
            +    C  ++ P P V W     Q +  K    ++           E   +        
Sbjct: 156 -QDALVCISESVPEPIVEWVLCDSQGESCKEESPAV--------VKKEEKVLHELFGTDI 206

Query: 188 KVTAKNELGE---SNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRL 244
           +  A+NELG       TI LN              P  T   +  +  + L    I C+ 
Sbjct: 207 RCCARNELGRECTRLFTIDLN------------QTPQTTLPQLFLKVGEPL---WIRCKA 251

Query: 245 VG-EPEPTISW 254
           V       ++W
Sbjct: 252 VHVNHGFGLTW 262

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 99.8 bits (248), Expect = 3e-24
 Identities = 30/203 (14%), Positives = 55/203 (27%), Gaps = 30/203 (14%)

Query: 10  SFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLV 69
           + T   +  + D+     F  +    P+    W         + + +             
Sbjct: 328 NATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGLDNGY--------- 378

Query: 70  ALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKR 129
           ++      +   G Y   A+N   +      L               +KP +  E     
Sbjct: 379 SISKFCNHKHQPGEYIFHAENDDAQFTKMFTL------------NIRRKPQVLAE--ASA 424

Query: 130 LLFECRIQADPAPTVIWSHSG-------VQVKEDKRHKFSIDKDGHSYFASLEIIDVTIE 182
               C     P P+  W            ++ E   ++ +  K    + +S  +      
Sbjct: 425 SQASCFSDGYPLPSWTWKKCSDKSPNCTEEITEGVWNRKANRKVFGQWVSSSTLNMSEAI 484

Query: 183 DAGKYKVTAKNELGESNATISLN 205
                K  A N LG S  TI LN
Sbjct: 485 KGFLVKCCAYNSLGTSCETILLN 507

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 89.0 bits (220), Expect = 2e-20
 Identities = 22/190 (11%), Positives = 55/190 (28%), Gaps = 27/190 (14%)

Query: 75  DVIETDAGLYK----VKAKNKMGEVAASINLNFSRE------QIDGLAPTFLKKPSIRQE 124
           +    D  + K        N      +S     S         +   +   + + +  + 
Sbjct: 1   ETGNQDLPVIKCVLINHKNNDSSVGKSSSYPMVSESPEDLGCALRPQSSGTVYEAAAVEV 60

Query: 125 DDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDA 184
           D    +  +  + A    + +W      +              +    S+ I+ +T   A
Sbjct: 61  DVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQ-----NRGVVSMVILKMTETQA 115

Query: 185 GKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRL 244
           G+Y +  ++E        +++               ++T R    +  ++     + C  
Sbjct: 116 GEYLLFIQSEATNYTILFTVS----------IRNTLLYTLRRPYFRKMEN--QDALVCIS 163

Query: 245 VGEPEPTISW 254
              PEP + W
Sbjct: 164 ESVPEPIVEW 173

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212

 Score =  114 bits (288), Expect = 1e-31
 Identities = 50/229 (21%), Positives = 82/229 (35%), Gaps = 31/229 (13%)

Query: 5   EDFAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGT 64
           EDF P   + P      +G      C+    P P I W++G  ++  D         +  
Sbjct: 6   EDFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLP 65

Query: 65  NKYLVALEL--DDVIETDAGLYKVKAKNKMGE-VAASINLNFSREQIDGLAPTFLKKPSI 121
           +  L  L +        D G+Y   A+N +GE V+   +L     ++  L   F + PS 
Sbjct: 66  SGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASL-----EVAILRDDFRQNPSD 120

Query: 122 RQEDDGKRLLFECR-IQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVT 180
                G+  + EC+  +  P PT+ W   G  + +         + G      L I    
Sbjct: 121 VMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDER--ITIRGG-----KLMITYTR 173

Query: 181 IEDAGKYKVTAKNELGE---SNATISLNFDSDDAPVPGEGTKPVFTERP 226
             DAGKY     N +GE     A +++              +P F +  
Sbjct: 174 KSDAGKYVCVGTNMVGERESEVAELTVL------------ERPSFVKAA 210

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212

 Score = 87.2 bits (216), Expect = 4e-21
 Identities = 40/152 (26%), Positives = 61/152 (40%), Gaps = 13/152 (8%)

Query: 107 QIDGLAPTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDK---RHKFSI 163
           + +   P  ++ PS      G+     C+ +  P PT+ W   G +V+ DK   R    +
Sbjct: 4   RQEDFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRML 63

Query: 164 DKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFT 223
              G  +F  +     +  D G Y   A+N LGE+         S DA +     +  F 
Sbjct: 64  LPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAV--------SHDASLEVAILRDDFR 115

Query: 224 ERPVTKQSDDDLNDIVIECRLV-GEPEPTISW 254
           + P            V+EC+   G PEPTISW
Sbjct: 116 QNPSDVMVAVG-EPAVMECQPPRGHPEPTISW 146

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190

 Score =  113 bits (284), Expect = 3e-31
 Identities = 32/204 (15%), Positives = 69/204 (33%), Gaps = 25/204 (12%)

Query: 8   APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDI--VWFRGETQLSEDTRTVMKTTPIGTN 65
            P      ++   D    +  +C L  +    +   W +   +L+   +           
Sbjct: 3   EPRIVTSEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRKNASNME----- 57

Query: 66  KYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQED 125
                  ++     D+G Y     + +    A+  +          AP          ++
Sbjct: 58  -----YRINKPRAEDSGEYHCVY-HFVSAPKANATIEVKA------APDITGHKRSENKN 105

Query: 126 DGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRH---KFSIDKDGHSYFASLEIIDVTI- 181
           +G+  +  C+    P P  +W      V E+  +   +F I    +     L I+++ I 
Sbjct: 106 EGQDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIINKENYT--ELNIVNLQIT 163

Query: 182 EDAGKYKVTAKNELGESNATISLN 205
           ED G+Y+  A N +G ++ +  L 
Sbjct: 164 EDPGEYECNATNSIGSASVSTVLR 187

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190

 Score = 84.9 bits (210), Expect = 2e-20
 Identities = 21/145 (14%), Positives = 49/145 (33%), Gaps = 23/145 (15%)

Query: 112 APTFLKKPSIRQEDDGKRLLFECRIQADPAP--TVIWSHSGVQVKEDKRHKFSIDKDGHS 169
            P  +    +   D    +  +C + +         W+ +GV++   +++  +       
Sbjct: 3   EPRIVTSEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRKNASN------- 55

Query: 170 YFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTK 229
                 I     ED+G+Y     + +    A  ++   +           P  T    ++
Sbjct: 56  --MEYRINKPRAEDSGEYHCVY-HFVSAPKANATIEVKA----------APDITGHKRSE 102

Query: 230 QSDDDLNDIVIECRLVGEPEPTISW 254
             ++   D ++ C+ VG P P   W
Sbjct: 103 NKNEG-QDAMMYCKSVGYPHPEWMW 126

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218

 Score =  113 bits (285), Expect = 4e-31
 Identities = 27/204 (13%), Positives = 57/204 (27%), Gaps = 37/204 (18%)

Query: 8   APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKY 67
               T  P+ +    G  +   C+   +P     WF+   ++     +            
Sbjct: 18  GSKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNGNTSE----------- 66

Query: 68  LVALELDDVIETDAGLYKVKAKNKMGEV----------AASINLNFSREQIDGLAPTFLK 117
              L  + V   DAG Y  +  N                   +   S + +         
Sbjct: 67  ---LIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQICV 123

Query: 118 KPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEII 177
           +P+ ++   G  L+ +C     P P   W  + + +  + +                 + 
Sbjct: 124 EPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETKK-------------LYMVP 170

Query: 178 DVTIEDAGKYKVTAKNELGESNAT 201
            V +E  G Y     N+    ++ 
Sbjct: 171 YVDLEHQGTYWCHVYNDRDSQDSK 194

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218

 Score = 87.6 bits (217), Expect = 3e-21
 Identities = 23/149 (15%), Positives = 43/149 (28%), Gaps = 20/149 (13%)

Query: 112 APTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYF 171
                  P  +    G+ +   CR    P     W     ++                  
Sbjct: 18  GSKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNGNTS------------ 65

Query: 172 ASLEIIDVTIEDAGKYKVTAKNELGE---SNATISLNFDSDDAPVPGEG---TKPVFTER 225
             L    V ++DAG Y     N         + + +    +      +G   +K      
Sbjct: 66  -ELIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVE 124

Query: 226 PVTKQSDDDLNDIVIECRLVGEPEPTISW 254
           P +++     + +V++C  VG P P   W
Sbjct: 125 PTSQKLMPG-STLVLQCVAVGSPIPHYQW 152

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339

 Score =  114 bits (286), Expect = 3e-30
 Identities = 43/264 (16%), Positives = 77/264 (29%), Gaps = 27/264 (10%)

Query: 4   AEDFAPSFTQKPQLRQEDEGNRLIFECQLLC-------NPKPDIVWFRGETQLSEDTRTV 56
           A        +  +     EG  +   C  +        +P+ ++ W + ++  +      
Sbjct: 14  AARSCRFRGRHYKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGEEE 73

Query: 57  MKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFL 116
            +           AL L   ++ D+G Y    +N       SI L             F+
Sbjct: 74  TRMWAQDG-----ALWLLPALQEDSGTYVCTTRNASYCDKMSIELRVFENTDAF--LPFI 126

Query: 117 KKPSIRQEDDGKRL---LFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFAS 173
             P I        L         +      + W    + + +D     S+          
Sbjct: 127 SYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNEKFLSVRGTT-----H 181

Query: 174 LEIIDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDD 233
           L + DV +EDAG Y+             I+ +          E T PV      T  +  
Sbjct: 182 LLVHDVALEDAGYYRCVLTFAHEGQQYNITRSI-ELRIKKKKEETIPVIISPLKTISASL 240

Query: 234 DLNDIVIECR---LVGEPEPTISW 254
             + + I C+     G P  T+ W
Sbjct: 241 G-SRLTIPCKVFLGTGTPLTTMLW 263

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339

 Score =  104 bits (261), Expect = 1e-26
 Identities = 38/220 (17%), Positives = 68/220 (30%), Gaps = 27/220 (12%)

Query: 5   EDFAPSFTQKPQLRQEDEGNRLI---FECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTP 61
            D    F   PQ+        L+               I W++    L +D    +    
Sbjct: 119 TDAFLPFISYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNEKFLSVRG 178

Query: 62  IGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFS---REQIDGLAPTFLKK 118
                    L + DV   DAG Y+            +I  +     +++ +   P  +  
Sbjct: 179 TTH------LLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKKKEETIPVIISP 232

Query: 119 PSIRQEDDGKRLLFECRIQA---DPAPTVIW----------SHSGVQVKEDKRHKFSIDK 165
                   G RL   C++      P  T++W          ++ G +V E  R ++S + 
Sbjct: 233 LKTISASLGSRLTIPCKVFLGTGTPLTTMLWWTANDTHIESAYPGGRVTEGPRQEYSENN 292

Query: 166 DGHSYFASLEIIDVTIEDAG-KYKVTAKNELGESNATISL 204
           + +     L    VT ED    +K    N L       ++
Sbjct: 293 ENY-IEVPLIFDPVTREDLHMDFKCVVHNTLSFQTLRTTV 331

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217

 Score =  111 bits (278), Expect = 4e-30
 Identities = 48/206 (23%), Positives = 80/206 (38%), Gaps = 19/206 (9%)

Query: 4   AEDFAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIG 63
            +  +P   + P      +       C++   P+P I WF+    +S + +   +     
Sbjct: 5   GQYQSPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKD 64

Query: 64  TNKYLVALELDDVIETDAGLYKVKAKNKMGE-VAASINLNFSREQIDGLAPTFLKKPSIR 122
                    +    E D G Y   AKN++G+ V+   +L     QI  L   F  +P   
Sbjct: 65  GA-LFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASL-----QIAVLRDDFRVEPKDT 118

Query: 123 QEDDGKRLLFEC-RIQADPAPTVIWSHSGVQVKEDKRH------KFSIDKDGHSYFASLE 175
           +   G+  L EC   +  P PT+IW   GV + + K        +  I   G     +L 
Sbjct: 119 RVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGG-----NLL 173

Query: 176 IIDVTIEDAGKYKVTAKNELGESNAT 201
           I +V   D G YK  A+N +G   ++
Sbjct: 174 ISNVEPIDEGNYKCIAQNLVGTRESS 199

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217

 Score = 91.1 bits (226), Expect = 2e-22
 Identities = 28/147 (19%), Positives = 57/147 (38%), Gaps = 16/147 (10%)

Query: 112 APTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYF 171
           +P  ++ P+       +     C+++  P PT+ W   G  V  +++    +     + F
Sbjct: 9   SPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALF 68

Query: 172 ASLEIIDVTIEDAGKYKVTAKNELGES---NATISLNFDSDDAPVPGEGTKPVFTERPVT 228
               +     +D G+Y   AKN +G++   +A++ +              +  F   P  
Sbjct: 69  FYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAV-----------LRDDFRVEPKD 117

Query: 229 KQSDDDLNDIVIECRLV-GEPEPTISW 254
            +        ++EC    G PEPT+ W
Sbjct: 118 TRVAKG-ETALLECGPPKGIPEPTLIW 143

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217

 Score = 44.9 bits (106), Expect = 6e-06
 Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 1/44 (2%)

Query: 211 APVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLVGEPEPTISW 254
           AP+ G+   P   E P       +     + C++ G+PEPTI W
Sbjct: 1   APLAGQYQSPRIIEHPTDLVVKKN-EPATLNCKVEGKPEPTIEW 43

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209

 Score =  109 bits (274), Expect = 1e-29
 Identities = 27/205 (13%), Positives = 56/205 (27%), Gaps = 11/205 (5%)

Query: 8   APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKY 67
           + +        +  E N +   C       P + W   +   +       K T    ++ 
Sbjct: 4   SVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRV 63

Query: 68  LVA---LELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQE 124
                 +    V   D G Y      + G     + +         + P+          
Sbjct: 64  TFLPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVL----VPPSKPTVNIPSSA 119

Query: 125 DDGKRLLFECRIQ-ADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFA---SLEIIDVT 180
             G R +  C  Q   P     W   G+ +  + +   +     +        L    ++
Sbjct: 120 TIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLS 179

Query: 181 IEDAGKYKVTAKNELGESNATISLN 205
             D G+Y   A+N  G    + ++ 
Sbjct: 180 ASDTGEYSCEARNGYGTPMTSNAVR 204

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209

 Score = 77.7 bits (191), Expect = 1e-17
 Identities = 24/148 (16%), Positives = 37/148 (25%), Gaps = 14/148 (9%)

Query: 112 APTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYF 171
           + T        +  +   +   C      +P V W            +   I        
Sbjct: 4   SVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRV 63

Query: 172 ----ASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPV 227
                 +    VT ED G Y      E G S   + +        VP     P      +
Sbjct: 64  TFLPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKL---IVLVP-----PSKPTVNI 115

Query: 228 TKQSDDDLNDIVIECRLV-GEPEPTISW 254
              +    N  V+ C    G P    +W
Sbjct: 116 PSSATIG-NRAVLTCSEQDGSPPSEYTW 142

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209

 Score = 65.8 bits (160), Expect = 3e-13
 Identities = 18/99 (18%), Positives = 32/99 (32%), Gaps = 3/99 (3%)

Query: 7   FAPSFTQKPQLRQEDEGNRLIFECQLLC-NPKPDIVWFRGETQLSEDTRTVMKTTPIGTN 65
             PS            GNR +  C     +P  +  WF+    +  + ++    +     
Sbjct: 106 VPPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYV 165

Query: 66  KYLV--ALELDDVIETDAGLYKVKAKNKMGEVAASINLN 102
                  L  D +  +D G Y  +A+N  G    S  + 
Sbjct: 166 LNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVR 204

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score =  112 bits (280), Expect = 6e-29
 Identities = 34/248 (13%), Positives = 79/248 (31%), Gaps = 34/248 (13%)

Query: 8   APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKY 67
           +     +    + D    +  +  +        +W    + L+      ++   + +   
Sbjct: 48  SSGTVYEAAAVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQNRGVVS--- 104

Query: 68  LVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDG 127
              + +  + ET AG Y +  +++         ++     I       L++P  R+ ++ 
Sbjct: 105 ---MVILKMTETQAGEYLLFIQSEATNYTILFTVS-----IRNTLLYTLRRPYFRKMEN- 155

Query: 128 KRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKY 187
            +    C  ++ P P V W     Q +  K    ++ K          + ++   D    
Sbjct: 156 -QDALVCISESVPEPIVEWVLCDSQGESCKEESPAVVKKE-----EKVLHELFGTD---I 206

Query: 188 KVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLV-G 246
           +  A+NELG     +       D         P  T   +  +  + L    I C+ V  
Sbjct: 207 RCCARNELGRECTRLFTI----DLNQT-----PQTTLPQLFLKVGEPL---WIRCKAVHV 254

Query: 247 EPEPTISW 254
                ++W
Sbjct: 255 NHGFGLTW 262

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score =  110 bits (275), Expect = 3e-28
 Identities = 31/205 (15%), Positives = 56/205 (27%), Gaps = 23/205 (11%)

Query: 6   DFAPSFTQKPQLRQEDEGNRLIFECQLLC-NPKPDIVWFRGETQLSEDTRTVMKTTPIGT 64
           D   +            G  L   C+ +  N    + W      L E     M T     
Sbjct: 225 DLNQTPQTTLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNR 284

Query: 65  NKYLVA-LELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTF---LKKPS 120
               +    +  V   D G Y   +     + A           +  +   F        
Sbjct: 285 TMIRILFAFVSSVARNDTGYYTCSSSKHPSQSA----------LVTIVEKGFINATNSSE 334

Query: 121 IRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVT 180
             + D  +   F  R +A P     W+ S      +++       +G+S    +      
Sbjct: 335 DYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGL----DNGYS----ISKFCNH 386

Query: 181 IEDAGKYKVTAKNELGESNATISLN 205
               G+Y   A+N+  +     +LN
Sbjct: 387 KHQPGEYIFHAENDDAQFTKMFTLN 411

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score =  106 bits (265), Expect = 9e-27
 Identities = 32/251 (12%), Positives = 66/251 (26%), Gaps = 34/251 (13%)

Query: 8   APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKY 67
              +T +    ++ E       C     P+P + W   ++Q                   
Sbjct: 140 TLLYTLRRPYFRKMENQ-DALVCISESVPEPIVEWVLCDSQGESCKEESPAVVKKEE--- 195

Query: 68  LVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDG 127
                L ++  TD    +  A+N++G     +           L  T            G
Sbjct: 196 ---KVLHELFGTD---IRCCARNELGRECTRLFTID-------LNQTPQTTLPQLFLKVG 242

Query: 128 KRLLFECR-IQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYF--ASLEIIDVTIEDA 184
           + L   C+ +  +    + W      ++E    + S      +        +  V   D 
Sbjct: 243 EPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDT 302

Query: 185 GKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPV-TKQSDDDLNDIVIECR 243
           G Y  ++     +S A +++              K              D   +     R
Sbjct: 303 GYYTCSSSKHPSQS-ALVTIV------------EKGFINATNSSEDYEIDQYEEFCFSVR 349

Query: 244 LVGEPEPTISW 254
               P+   +W
Sbjct: 350 FKAYPQIRCTW 360

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score = 87.4 bits (216), Expect = 4e-20
 Identities = 21/190 (11%), Positives = 57/190 (30%), Gaps = 27/190 (14%)

Query: 75  DVIETDAGLYK-VKAKNKMGEVAASI---------NLNFSREQIDGLAPTFLKKPSIRQE 124
           +    D  + K V   +K  + +            +       +   +   + + +  + 
Sbjct: 1   ETGNQDLPVIKCVLINHKNNDSSVGKSSSYPMVSESPEDLGCALRPQSSGTVYEAAAVEV 60

Query: 125 DDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDA 184
           D    +  +  + A    + +W      +                   S+ I+ +T   A
Sbjct: 61  DVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQNRGVV-----SMVILKMTETQA 115

Query: 185 GKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRL 244
           G+Y +  ++E        +++  +            ++T R    +  ++     + C  
Sbjct: 116 GEYLLFIQSEATNYTILFTVSIRN----------TLLYTLRRPYFRKMEN--QDALVCIS 163

Query: 245 VGEPEPTISW 254
              PEP + W
Sbjct: 164 ESVPEPIVEW 173

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score =  112 bits (281), Expect = 2e-28
 Identities = 44/248 (17%), Positives = 77/248 (31%), Gaps = 38/248 (15%)

Query: 9   PSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFR-GETQLSEDTRTVMKTTPIGTNKY 67
              T  P       G  L   C    NP     W   G  Q                   
Sbjct: 382 DDPTISPSYTYYRPGVNLSLSCHAASNPPAQYSWLIDGNIQQHTQE-------------- 427

Query: 68  LVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDG 127
              L + ++ E ++GLY  +A N     + +            L    +   + +  +D 
Sbjct: 428 ---LFISNITEKNSGLYTCQANNSASGHSRTTVKTI--TVSAELPKPSISSNNSKPVEDK 482

Query: 128 KRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKY 187
             + F C  +A    T +W  +G  +    R + S          +L + +VT  DA  Y
Sbjct: 483 DAVAFTCEPEAQN-TTYLWWVNGQSLPVSPRLQLSNGN------RTLTLFNVTRNDARAY 535

Query: 188 KVTAKNELGESNA-TISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLVG 246
               +N +  + +  ++L+       V      P+ +    +  S  +L    + C    
Sbjct: 536 VCGIQNSVSANRSDPVTLD-------VLYGPDTPIISPPDSSYLSGANL---NLSCHSAS 585

Query: 247 EPEPTISW 254
            P P  SW
Sbjct: 586 NPSPQYSW 593

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score =  107 bits (268), Expect = 1e-26
 Identities = 40/257 (15%), Positives = 76/257 (29%), Gaps = 34/257 (13%)

Query: 11  FTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRT-------VMKTTPIG 63
            T +       EG  ++     L        W++GE                     P  
Sbjct: 2   LTIESTPFNVAEGKEVLLLVHNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAY 61

Query: 64  TNKYLVA----LELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKP 119
           + + ++     L + ++I+ D G Y +        V       F         P      
Sbjct: 62  SGREIIYPNASLLIQNIIQNDTGFYTLHVIKSDL-VNEEATGQFRVYP---ELPKPSISS 117

Query: 120 SIRQE-DDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIID 178
           +  +  +D   + F C  +     T +W  +   +    R + S          +L + +
Sbjct: 118 NNSKPVEDKDAVAFTCEPETQD-ATYLWWVNNQSLPVSPRLQLSNGN------RTLTLFN 170

Query: 179 VTIEDAGKYKVTAKNELGESN-ATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLND 237
           VT  D   YK   +N +      ++ LN       V      P  +    + +S ++L  
Sbjct: 171 VTRNDTASYKCETQNPVSARRSDSVILN-------VLYGPDAPTISPLNTSYRSGENL-- 221

Query: 238 IVIECRLVGEPEPTISW 254
             + C     P    SW
Sbjct: 222 -NLSCHAASNPPAQYSW 237

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score =  105 bits (262), Expect = 6e-26
 Identities = 34/253 (13%), Positives = 70/253 (27%), Gaps = 36/253 (14%)

Query: 3   IAEDFAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPI 62
           +  +    F         ++ + +   C+         +W+     L    R  ++ +  
Sbjct: 284 VYAEPPKPFITSNNSNPVEDEDAVALTCEPEIQNTT-YLWWVNNQSLPVSPR--LQLSND 340

Query: 63  GTNKYLVALELDDVIETDAGLYKVKAKNKMGE-VAASINLNFSREQIDGLAPTFLKKPSI 121
                   L L  V   D G Y+   +N++    +  + LN     +          PS 
Sbjct: 341 NRT-----LTLLSVTRNDVGPYECGIQNELSVDHSDPVILN-----VLYGPDDPTISPSY 390

Query: 122 RQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTI 181
                G  L   C   ++P     W   G   +                   L I ++T 
Sbjct: 391 TYYRPGVNLSLSCHAASNPPAQYSWLIDGNIQQHT---------------QELFISNITE 435

Query: 182 EDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIE 241
           +++G Y   A N     + T           +      P  +      +  +D + +   
Sbjct: 436 KNSGLYTCQANNSASGHSRTTVKT-------ITVSAELPKPSISSNNSKPVEDKDAVAFT 488

Query: 242 CRLVGEPEPTISW 254
           C    +    + W
Sbjct: 489 CEPEAQNTTYLWW 501

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score =  100 bits (249), Expect = 4e-24
 Identities = 30/198 (15%), Positives = 58/198 (29%), Gaps = 29/198 (14%)

Query: 9   PSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYL 68
                    +  ++ + + F C+        + W  G++        +       T    
Sbjct: 468 KPSISSNNSKPVEDKDAVAFTCEPEAQNTTYLWWVNGQSLPVSPRLQLSNGN--RT---- 521

Query: 69  VALELDDVIETDAGLYKVKAKNKMGEV-AASINLNFSREQIDGLAPTFLKKPSIRQEDDG 127
             L L +V   DA  Y    +N +    +  + L+     +     T +  P       G
Sbjct: 522 --LTLFNVTRNDARAYVCGIQNSVSANRSDPVTLD-----VLYGPDTPIISPPDSSYLSG 574

Query: 128 KRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKY 187
             L   C   ++P+P   W  +G+  +                   L I  +T  + G Y
Sbjct: 575 ANLNLSCHSASNPSPQYSWRINGIPQQHT---------------QVLFIAKITPNNNGTY 619

Query: 188 KVTAKNELGESNATISLN 205
                N     N +I  +
Sbjct: 620 ACFVSNLATGRNNSIVKS 637

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 98.5 bits (245), Expect = 1e-23
 Identities = 41/253 (16%), Positives = 73/253 (28%), Gaps = 36/253 (14%)

Query: 3   IAEDFAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPI 62
           +  +           +  ++ + + F C+         +W+     L    R  +     
Sbjct: 106 VYPELPKPSISSNNSKPVEDKDAVAFTCEPETQD-ATYLWWVNNQSLPVSPRLQLSNGN- 163

Query: 63  GTNKYLVALELDDVIETDAGLYKVKAKNKMGEVA-ASINLNFSREQIDGLAPTFLKKPSI 121
            T      L L +V   D   YK + +N +      S+ LN                P  
Sbjct: 164 RT------LTLFNVTRNDTASYKCETQNPVSARRSDSVILNVL-----YGPDAPTISPLN 212

Query: 122 RQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTI 181
                G+ L   C   ++P     W  +G   +  +                L I ++T+
Sbjct: 213 TSYRSGENLNLSCHAASNPPAQYSWFVNGTFQQSTQE---------------LFIPNITV 257

Query: 182 EDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIE 241
            ++G Y   A N     N T           V  E  KP  T        D+D   + + 
Sbjct: 258 NNSGSYTCQAHNSDTGLNRTTVTTIT-----VYAEPPKPFITSNNSNPVEDED--AVALT 310

Query: 242 CRLVGEPEPTISW 254
           C    +    + W
Sbjct: 311 CEPEIQNTTYLWW 323

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score =  103 bits (259), Expect = 2e-28
 Identities = 32/108 (29%), Positives = 50/108 (46%), Gaps = 4/108 (3%)

Query: 110 GLAPTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHS 169
           G  P FL+ P      +GK    +C++   P P + W   G  V+ D  HK  + ++G  
Sbjct: 7   GFRPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVH 66

Query: 170 YFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEG 217
              SL I  VT  DAG Y   A N  G+++ ++ L   + ++  P  G
Sbjct: 67  ---SLIIEPVTSRDAGIYTCIATNRAGQNSFSLELVVAAKESG-PSSG 110

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 78.9 bits (195), Expect = 5e-19
 Identities = 26/99 (26%), Positives = 42/99 (42%), Gaps = 4/99 (4%)

Query: 4   AEDFAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIG 63
           +  F P F Q P      EG     +C++   P PD+ W      +  D+   M     G
Sbjct: 5   SSGFRPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENG 64

Query: 64  TNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLN 102
            +    +L ++ V   DAG+Y   A N+ G+ + S+ L 
Sbjct: 65  VH----SLIIEPVTSRDAGIYTCIATNRAGQNSFSLELV 99

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 37.3 bits (87), Expect = 6e-04
 Identities = 11/44 (25%), Positives = 20/44 (45%), Gaps = 7/44 (15%)

Query: 214 PGEGTKPVFTERPVTKQSDDDLND---IVIECRLVGEPEPTISW 254
              G +P F + P     D  + +     ++C++ G P P +SW
Sbjct: 4   GSSGFRPHFLQAP----GDLTVQEGKLCRMDCKVSGLPTPDLSW 43

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score =  108 bits (270), Expect = 4e-28
 Identities = 34/256 (13%), Positives = 68/256 (26%), Gaps = 24/256 (9%)

Query: 8   APSFTQK--PQLRQEDEGNRLIFECQLLCNP-KPDIVWFRGETQLSEDTRTVMKTTPIGT 64
           A    ++    +         +  C L  N  K  I W++ +++    T    +      
Sbjct: 3   ADKCKEREEKIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKE 62

Query: 65  NKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQE 124
                 L        D+G Y    +N    +   I+  F   + +               
Sbjct: 63  -----KLWFVPAKVEDSGHYYCVVRNSSYCLRIKISAKFVENEPNLCYNAQAIFKQKLPV 117

Query: 125 DDGKRLLFEC------RIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIID 178
                    C      + + +  P + W      +  D  H   +          L +++
Sbjct: 118 --AGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVK-------DRLIVMN 168

Query: 179 VTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDI 238
           V  +  G Y   A          I+   +        + T+PV           D  + I
Sbjct: 169 VAEKHRGNYTCHASYTYLGKQYPITRVIEFITL-EENKPTRPVIVSPANETMEVDLGSQI 227

Query: 239 VIECRLVGEPEPTISW 254
            + C + G+      W
Sbjct: 228 QLICNVTGQLSDIAYW 243

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score = 91.7 bits (227), Expect = 5e-22
 Identities = 35/219 (15%), Positives = 58/219 (26%), Gaps = 30/219 (13%)

Query: 8   APSFTQKPQLRQE---DEGNRLIFECQLLC------NPKPDIVWFRGETQLSEDTRTVMK 58
            P+     Q   +            C  +       N  P + W++    L  D      
Sbjct: 100 EPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSG 159

Query: 59  TTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFS---REQIDGLAPTF 115
                       L + +V E   G Y   A          I         E+     P  
Sbjct: 160 VKDR--------LIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFITLEENKPTRPVI 211

Query: 116 LKKPSIRQE-DDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRH--------KFSIDKD 166
           +   +   E D G ++   C +    +    W  +G  + ED           +   +K 
Sbjct: 212 VSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKR 271

Query: 167 GHSYFASLEIIDVTIED-AGKYKVTAKNELGESNATISL 204
             +    L I ++        +   AKN  G   A I L
Sbjct: 272 RSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQL 310

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201

 Score =  104 bits (260), Expect = 1e-27
 Identities = 31/205 (15%), Positives = 61/205 (29%), Gaps = 23/205 (11%)

Query: 9   PSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIV--WFRGETQL--SEDTRTVMKTTPIGT 64
           P   ++    +  EG  ++  C    +   D+   W   E  +  + D R    +   G 
Sbjct: 9   PFPPEERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKR-RFVSQTNGN 67

Query: 65  NKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLN----FSREQIDGLAPTFLKKPS 120
                 L + +V  +D G Y     +     +                       + +  
Sbjct: 68  ------LYIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFK 121

Query: 121 IRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVT 180
                 G+ +  EC    +P P + W      +             G      L+I ++ 
Sbjct: 122 DVYALMGQNVTLECFALGNPVPDIRWRKVLEPMPSTAEIS----TSGAV----LKIFNIQ 173

Query: 181 IEDAGKYKVTAKNELGESNATISLN 205
           +ED G Y+  A+N  G+      + 
Sbjct: 174 LEDEGIYECEAENIRGKDKHQARIY 198

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201

 Score = 71.5 bits (175), Expect = 2e-15
 Identities = 25/148 (16%), Positives = 46/148 (31%), Gaps = 11/148 (7%)

Query: 111 LAPTFLKKPSIRQEDDGKRLLFECRIQADPAP--TVIWSHSG--VQVKEDKRHKFSIDKD 166
           L P   ++    +  +GK ++  C          +  W  +   V +  DKR  F    +
Sbjct: 7   LDPFPPEERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRR-FVSQTN 65

Query: 167 GHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERP 226
           G     +L I +V   D G Y     +     +                +        + 
Sbjct: 66  G-----NLYIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQF 120

Query: 227 VTKQSDDDLNDIVIECRLVGEPEPTISW 254
               +     ++ +EC  +G P P I W
Sbjct: 121 KDVYALMG-QNVTLECFALGNPVPDIRW 147

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201

 Score = 62.2 bits (151), Expect = 5e-12
 Identities = 17/101 (16%), Positives = 34/101 (33%), Gaps = 9/101 (8%)

Query: 2   GIAEDFAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTP 61
              + +      + +      G  +  EC  L NP PDI W +    +            
Sbjct: 107 RTTKPYPADIVVQFKDVYALMGQNVTLECFALGNPVPDIRWRKVLEPMPSTAEISTSGA- 165

Query: 62  IGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLN 102
                    L++ ++   D G+Y+ +A+N  G+      + 
Sbjct: 166 --------VLKIFNIQLEDEGIYECEAENIRGKDKHQARIY 198

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A Length = 106

 Score =  100 bits (252), Expect = 2e-27
 Identities = 28/107 (26%), Positives = 40/107 (37%), Gaps = 6/107 (5%)

Query: 101 LNFSREQID--GLAPTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKR 158
           ++          LA   L KP      +G+   F C    +P PTV W   G  +    R
Sbjct: 1   MHHHHHHSSKTTLAARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSAR 60

Query: 159 HKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLN 205
           H+ +  K       + EI  V   D G Y V  +N  G+  A  +L 
Sbjct: 61  HQVTTTKYKS----TFEISSVQASDEGNYSVVVENSEGKQEAEFTLT 103

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A Length = 106

 Score = 78.2 bits (193), Expect = 8e-19
 Identities = 26/95 (27%), Positives = 34/95 (35%), Gaps = 5/95 (5%)

Query: 8   APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKY 67
           A     KP+     EG    F C     P P + W R    LS   R  + TT   +   
Sbjct: 14  AARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKST-- 71

Query: 68  LVALELDDVIETDAGLYKVKAKNKMGEVAASINLN 102
               E+  V  +D G Y V  +N  G+  A   L 
Sbjct: 72  ---FEISSVQASDEGNYSVVVENSEGKQEAEFTLT 103

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score =  105 bits (263), Expect = 6e-27
 Identities = 31/201 (15%), Positives = 63/201 (31%), Gaps = 19/201 (9%)

Query: 9   PSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYL 68
           P+   +      D G+ ++  CQ+         W   E + S           +G     
Sbjct: 159 PTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPSLGL---- 214

Query: 69  VALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDGK 128
                +   + +       A+N +G    S+ +N           +F     +    +  
Sbjct: 215 --TLANVTSDLNRKNVTCWAENDVGRAEVSVQVN----------VSFPASVQLHTAVEMH 262

Query: 129 RLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFA---SLEIIDVTIEDAG 185
                  +   PAP++ W  +G  + E         +   +       L +   T  + G
Sbjct: 263 HWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNG 322

Query: 186 KYKVTAKNELGESNATISLNF 206
            Y + A N  G+++A+I   F
Sbjct: 323 NYTLLAANPFGQASASIMAAF 343

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 75.5 bits (185), Expect = 5e-16
 Identities = 23/143 (16%), Positives = 50/143 (34%), Gaps = 22/143 (15%)

Query: 113 PTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFA 172
           PT   +      D G  +L  C+++        W      +  +     ++ K G     
Sbjct: 159 PTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGW------ILTELEQSATVMKSGGLPSL 212

Query: 173 SLEIIDVT-IEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQS 231
            L + +VT   +       A+N++G +  ++ +N               V     V   +
Sbjct: 213 GLTLANVTSDLNRKNVTCWAENDVGRAEVSVQVN---------------VSFPASVQLHT 257

Query: 232 DDDLNDIVIECRLVGEPEPTISW 254
             +++   I   + G+P P++ W
Sbjct: 258 AVEMHHWCIPFSVDGQPAPSLRW 280

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A Length = 154

 Score =  100 bits (251), Expect = 8e-27
 Identities = 37/148 (25%), Positives = 58/148 (39%), Gaps = 5/148 (3%)

Query: 79  TDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQA 138
             +G       N          L    E+   + P F K     +  +G    F+C+++ 
Sbjct: 8   KASGSSPTSPINANKVENEDAFLEEVAEEKPHVKPYFTKTILDMEVVEGSAARFDCKVEG 67

Query: 139 DPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGES 198
            P P V+W      VKE +  +   D++G     SL I +V  +D  KY   A N LGE+
Sbjct: 68  YPDPEVMWFKDDNPVKESRHFQIDYDEEG---NCSLTISEVCGDDDAKYTCKAVNSLGEA 124

Query: 199 NATISLNFDS--DDAPVPGEGTKPVFTE 224
             T  L  ++   +    GEG +    E
Sbjct: 125 TCTAELLVETMGKEGEGEGEGEEDEEEE 152

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A Length = 154

 Score = 76.4 bits (188), Expect = 1e-17
 Identities = 23/95 (24%), Positives = 41/95 (43%), Gaps = 4/95 (4%)

Query: 8   APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKY 67
            P FT+     +  EG+   F+C++   P P+++WF+ +  + E     +     G    
Sbjct: 41  KPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGN--- 97

Query: 68  LVALELDDVIETDAGLYKVKAKNKMGEVAASINLN 102
             +L + +V   D   Y  KA N +GE   +  L 
Sbjct: 98  -CSLTISEVCGDDDAKYTCKAVNSLGEATCTAELL 131

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A Length = 154

 Score = 40.6 bits (95), Expect = 9e-05
 Identities = 11/76 (14%), Positives = 27/76 (35%), Gaps = 7/76 (9%)

Query: 179 VTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDI 238
                +        N++   +A +       +        KP FT+  +  +  +  +  
Sbjct: 7   RKASGSSPTSPINANKVENEDAFLE------EVAEEKPHVKPYFTKTILDMEVVEG-SAA 59

Query: 239 VIECRLVGEPEPTISW 254
             +C++ G P+P + W
Sbjct: 60  RFDCKVEGYPDPEVMW 75

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182

 Score =  101 bits (253), Expect = 9e-27
 Identities = 26/195 (13%), Positives = 54/195 (27%), Gaps = 24/195 (12%)

Query: 8   APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKY 67
                  P      +G  +   C +    +PDI W +    +    +  +  +       
Sbjct: 2   GLKLMGAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIG- 60

Query: 68  LVALELDDVIETDAGLYKVKAKNKMGE-VAASINLNFSREQIDGLAPTFLKKPSIRQEDD 126
              L L  V  +DAG Y  + ++     ++  + L           P F  +P       
Sbjct: 61  --FLSLKSVERSDAGRYWCQVEDGGETEISQPVWLTVEG------VPFFTVEPKDLAVPP 112

Query: 127 GKRLLFECRIQADPAP-TVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAG 185
                  C     P P T++W     ++                      +    +  + 
Sbjct: 113 NAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPAPS-------------PSVLNVTGVTQST 159

Query: 186 KYKVTAKNELGESNA 200
            +   A N  G +++
Sbjct: 160 MFSCEAHNLKGLASS 174

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182

 Score = 83.3 bits (206), Expect = 6e-20
 Identities = 26/149 (17%), Positives = 47/149 (31%), Gaps = 23/149 (15%)

Query: 112 APTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYF 171
               +  P       G+ +   C ++    P + W   G  V+   +    + +    + 
Sbjct: 2   GLKLMGAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQH--WI 59

Query: 172 ASLEIIDVTIEDAGKYKVTAKNELGES---NATISLNFDSDDAPVPGEGTKPVFTERP-- 226
             L +  V   DAG+Y    ++           +++               P FT  P  
Sbjct: 60  GFLSLKSVERSDAGRYWCQVEDGGETEISQPVWLTVE------------GVPFFTVEPKD 107

Query: 227 VTKQSDDDLNDIVIECRLVGEPEP-TISW 254
           +    +       + C  VG PEP TI W
Sbjct: 108 LAVPPNAP---FQLSCEAVGPPEPVTIVW 133

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182

 Score = 48.3 bits (115), Expect = 3e-07
 Identities = 19/92 (20%), Positives = 34/92 (36%), Gaps = 15/92 (16%)

Query: 8   APSFTQKPQLRQEDEGNRLIFECQLLCNPKPD-IVWFRGETQLSEDTRTVMKTTPIGTNK 66
            P FT +P+             C+ +  P+P  IVW+RG T++                 
Sbjct: 98  VPFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPA-----------PS 146

Query: 67  YLVALELDDVIETDAGLYKVKAKNKMGEVAAS 98
             V   L+    T + ++  +A N  G  ++ 
Sbjct: 147 PSV---LNVTGVTQSTMFSCEAHNLKGLASSR 175

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212

 Score =  101 bits (254), Expect = 1e-26
 Identities = 32/215 (14%), Positives = 63/215 (29%), Gaps = 12/215 (5%)

Query: 9   PSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYL 68
            S        Q  E   +   C       P + W   +   +       + T    ++  
Sbjct: 2   GSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVT 61

Query: 69  VA---LELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQED 125
            +   +    V   D G Y      + G+    ++++ +      + P+           
Sbjct: 62  FSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVL----VPPSKPTISVPSSVT 117

Query: 126 DGKRLLFECR-IQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYF----ASLEIIDVT 180
            G R +  C      P     W   G+ +      K     +           L    VT
Sbjct: 118 IGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVT 177

Query: 181 IEDAGKYKVTAKNELGESNATISLNFDSDDAPVPG 215
             D+G+Y   A+N  G +  + + + D+ +  V G
Sbjct: 178 AFDSGEYYCQAQNGYGTAMRSEAAHMDAVELNVGG 212

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212

 Score = 75.4 bits (185), Expect = 1e-16
 Identities = 25/149 (16%), Positives = 38/149 (25%), Gaps = 18/149 (12%)

Query: 113 PTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYF- 171
            +     S  Q  + + +   C      +P V W            +   I         
Sbjct: 2   GSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVT 61

Query: 172 ---ASLEIIDVTIEDAGKYKVTAKNELGE--SNATISLNFDSDDAPVPGEGTKPVFTERP 226
              + +    VT +D G+Y      E G+     +I L               P      
Sbjct: 62  FSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVLV----------PPSKPTIS 111

Query: 227 VTKQSDDDLNDIVIECRLV-GEPEPTISW 254
           V        N  V+ C    G P    SW
Sbjct: 112 VPSSVTIG-NRAVLTCSEHDGSPPSEYSW 139

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212

 Score = 59.2 bits (143), Expect = 7e-11
 Identities = 19/100 (19%), Positives = 30/100 (30%), Gaps = 4/100 (4%)

Query: 7   FAPSFTQKPQLRQEDEGNRLIFECQLLC-NPKPDIVWFRGETQLSEDTRTVMKTTPIGTN 65
             PS            GNR +  C     +P  +  WF+    +        +     + 
Sbjct: 103 VPPSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSF 162

Query: 66  KYLVA---LELDDVIETDAGLYKVKAKNKMGEVAASINLN 102
                   L  D V   D+G Y  +A+N  G    S   +
Sbjct: 163 TIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAH 202

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 100

 Score = 98.2 bits (245), Expect = 1e-26
 Identities = 30/94 (31%), Positives = 44/94 (46%), Gaps = 3/94 (3%)

Query: 112 APTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYF 171
            P F++ P     D+G+    + ++   PAP V W  +G  V+ D  HK  + + G    
Sbjct: 5   PPRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKG---L 61

Query: 172 ASLEIIDVTIEDAGKYKVTAKNELGESNATISLN 205
            SL    V   DAG Y   AKN  GE+  T+ L+
Sbjct: 62  HSLIFEVVRASDAGAYACVAKNRAGEATFTVQLD 95

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 100

 Score = 80.1 bits (198), Expect = 1e-19
 Identities = 26/95 (27%), Positives = 42/95 (44%), Gaps = 4/95 (4%)

Query: 8   APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKY 67
            P F Q P+    DEG     + ++   P PD+ W+     +  D    M  +  G +  
Sbjct: 5   PPRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLH-- 62

Query: 68  LVALELDDVIETDAGLYKVKAKNKMGEVAASINLN 102
             +L  + V  +DAG Y   AKN+ GE   ++ L+
Sbjct: 63  --SLIFEVVRASDAGAYACVAKNRAGEATFTVQLD 95

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 118

 Score = 98.3 bits (245), Expect = 2e-26
 Identities = 31/111 (27%), Positives = 49/111 (44%), Gaps = 9/111 (8%)

Query: 112 APTF--LKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHS 169
            P    L++P +R E        E  ++ +P PT+ W H+G  ++E K       ++G  
Sbjct: 8   PPRVVSLEEPELRLEH-----CIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEI 62

Query: 170 YFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKP 220
               L     T  + G Y + AKN LG +N TI+ +F     P P +   P
Sbjct: 63  SEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHF--LKEPFPVDEVSP 111

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 118

 Score = 67.1 bits (164), Expect = 1e-14
 Identities = 22/99 (22%), Positives = 35/99 (35%), Gaps = 8/99 (8%)

Query: 7   FAPSFTQ--KPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGT 64
           + P      +P+LR E        E  +  NP P + W      L E     ++      
Sbjct: 7   YPPRVVSLEEPELRLEH-----CIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQ-EG 60

Query: 65  NKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLNF 103
                 L  +     + G Y + AKN +G    +IN +F
Sbjct: 61  EISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHF 99

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195

 Score = 97.3 bits (242), Expect = 5e-25
 Identities = 31/200 (15%), Positives = 51/200 (25%), Gaps = 24/200 (12%)

Query: 9   PSFTQKPQLRQEDEGNRLIFECQLLC-NPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKY 67
             F   P       G      CQL      P++ W R    L     T  +       + 
Sbjct: 3   SPFVGNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQD 62

Query: 68  LV----ALELDDVIETDAGLYKVKAKNKMGE-VAASINLNFSREQIDGLAPTFLKKPSIR 122
                  L +  +  +D G Y+          V+    +           P FL++P  R
Sbjct: 63  DWIVVSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEG------LPYFLEEPEDR 116

Query: 123 QEDDGKRLLFECRIQADPAPTVI-WSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTI 181
                      C+ Q  P P  + W    V +     H                +    +
Sbjct: 117 TVAANTPFNLSCQAQGPPEPVDLLWLQDAVPLATAPGH-----------GPQRSLHVPGL 165

Query: 182 EDAGKYKVTAKNELGESNAT 201
                +   A N  G + + 
Sbjct: 166 NKTSSFSCEAHNAKGVTTSR 185

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195

 Score = 74.6 bits (183), Expect = 1e-16
 Identities = 26/152 (17%), Positives = 46/152 (30%), Gaps = 23/152 (15%)

Query: 113 PTFLKKPSIRQEDDGKRLLFECRIQA-DPAPTVIWSHSGVQVKEDKRHKFSI-----DKD 166
             F+  P       G      C++Q     P V W   G  ++     +  +     ++D
Sbjct: 3   SPFVGNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQD 62

Query: 167 GHSYFASLEIIDVTIEDAGKYKVTAKNELGE---SNATISLNFDSDDAPVPGEGTKPVFT 223
                + L I  + + D G+Y+                + L               P F 
Sbjct: 63  DWIVVSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLE------------GLPYFL 110

Query: 224 ERPVTKQSDDDLNDIVIECRLVGEPEPT-ISW 254
           E P  +    +     + C+  G PEP  + W
Sbjct: 111 EEPEDRTVAAN-TPFNLSCQAQGPPEPVDLLW 141

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195

 Score = 47.6 bits (113), Expect = 7e-07
 Identities = 15/92 (16%), Positives = 30/92 (32%), Gaps = 13/92 (14%)

Query: 8   APSFTQKPQLRQEDEGNRLIFECQLLCNPKP-DIVWFRGETQLSEDTRTVMKTTPIGTNK 66
            P F ++P+ R           CQ    P+P D++W +    L+       + +      
Sbjct: 106 LPYFLEEPEDRTVAANTPFNLSCQAQGPPEPVDLLWLQDAVPLATAPGHGPQRS------ 159

Query: 67  YLVALELDDVIETDAGLYKVKAKNKMGEVAAS 98
               L +  +       +  +A N  G   + 
Sbjct: 160 ----LHVPGL--NKTSSFSCEAHNAKGVTTSR 185

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score = 99.3 bits (247), Expect = 5e-25
 Identities = 27/203 (13%), Positives = 61/203 (30%), Gaps = 12/203 (5%)

Query: 5   EDFAPSFTQKPQLRQEDEGNRLIFECQLL-CNPKPDIVWFRGETQLSEDTRTVMKTTPIG 63
           +D A  +    Q     E    +  C L     +  +   R   +           +P  
Sbjct: 86  KDPARPWNVLAQEVVVFEDQDALLPCLLTDPVLEAGVSLVRVRGRPLMRHTNY-SFSPWH 144

Query: 64  TNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQ 123
                    +       +  Y+  A     +V  SI++    +++    P     P+   
Sbjct: 145 G------FTIHRAKFIQSQDYQCSALMGGRKVM-SISIRLKVQKVIPGPPALTLVPAELV 197

Query: 124 EDDGKRLLFECRIQADPAPTVI-WSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIE 182
              G+     C   +      +   H+  ++   ++  F  ++       +L +  V  +
Sbjct: 198 RIRGEAAQIVCSASSVDVNFDVFLQHNNTKLAIPQQSDFHNNRYQKVL--TLNLDQVDFQ 255

Query: 183 DAGKYKVTAKNELGESNATISLN 205
            AG Y   A N  G+ + ++   
Sbjct: 256 HAGNYSCVASNVQGKHSTSMFFR 278

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score = 76.9 bits (189), Expect = 9e-17
 Identities = 29/250 (11%), Positives = 56/250 (22%), Gaps = 38/250 (15%)

Query: 9   PSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYL 68
           P             G  +   C         + W                    G++  L
Sbjct: 5   PVIEPSVPELVVKPGATVTLRCVG----NGSVEWDG-------PPSPHWTLYSDGSSSIL 53

Query: 69  VALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDGK 128
                ++    + G Y+          +A+I+L      +   A  +          + +
Sbjct: 54  S---TNNATFQNTGTYRCTEPGDPLGGSAAIHLY-----VKDPARPWNVLAQEVVVFEDQ 105

Query: 129 RLLFECRIQA-DPAPTVIWSH-SGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGK 186
             L  C +        V      G  +     + FS             I       +  
Sbjct: 106 DALLPCLLTDPVLEAGVSLVRVRGRPLMRHTNYSFSPWH-------GFTIHRAKFIQSQD 158

Query: 187 YKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERP--VTKQSDDDLNDIVIECRL 244
           Y+ +A    G    +IS+               P  T  P  + +   +      I C  
Sbjct: 159 YQCSALMG-GRKVMSISIRLKVQKVI----PGPPALTLVPAELVRIRGEAA---QIVCSA 210

Query: 245 VGEPEPTISW 254
                    +
Sbjct: 211 SSVDVNFDVF 220

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score = 55.7 bits (134), Expect = 2e-09
 Identities = 19/100 (19%), Positives = 27/100 (27%), Gaps = 4/100 (4%)

Query: 4   AEDFAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIV-WFRGETQLSEDTRTVMKTTPI 62
                P+ T  P       G      C          V      T+L+   ++       
Sbjct: 182 VIPGPPALTLVPAELVRIRGEAAQIVCSASSVDVNFDVFLQHNNTKLAIPQQSDFHNNRY 241

Query: 63  GTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLN 102
                L    LD V    AG Y   A N  G+ + S+   
Sbjct: 242 QKVLTLN---LDQVDFQHAGNYSCVASNVQGKHSTSMFFR 278

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens} Length = 103

 Score = 93.9 bits (234), Expect = 8e-25
 Identities = 23/94 (24%), Positives = 44/94 (46%), Gaps = 4/94 (4%)

Query: 112 APTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYF 171
           AP    +    +   G+   F   +Q+ P   V W H+GV+++E  +  ++         
Sbjct: 8   APRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNTSGVL--- 64

Query: 172 ASLEIIDVTIEDAGKYKVTAKNELGESNATISLN 205
            +LEI+D   +D+G Y+    N  GE++   +L+
Sbjct: 65  -TLEILDCHTDDSGTYRAVCTNYKGEASDYATLD 97

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens} Length = 103

 Score = 82.0 bits (203), Expect = 3e-20
 Identities = 20/97 (20%), Positives = 37/97 (38%), Gaps = 5/97 (5%)

Query: 6   DFAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTN 65
           D AP  T + +  +   G    F   +   P  ++ W+    +L E ++           
Sbjct: 6   DHAPRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYT-----NT 60

Query: 66  KYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLN 102
             ++ LE+ D    D+G Y+    N  GE +    L+
Sbjct: 61  SGVLTLEILDCHTDDSGTYRAVCTNYKGEASDYATLD 97

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 116

 Score = 93.2 bits (232), Expect = 2e-24
 Identities = 28/94 (29%), Positives = 44/94 (46%), Gaps = 2/94 (2%)

Query: 112 APTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYF 171
           AP F+ KP  ++  +G  +  EC+I A P P + W  +   V+ +         +     
Sbjct: 15  APMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTGRV- 73

Query: 172 ASLEIIDVTIEDAGKYKVTAKNELGESNATISLN 205
            +L I DV  +DAG Y V+A NE G +     L+
Sbjct: 74  -TLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLD 106

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 116

 Score = 77.4 bits (191), Expect = 2e-18
 Identities = 30/95 (31%), Positives = 44/95 (46%), Gaps = 3/95 (3%)

Query: 8   APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKY 67
           AP F  KPQ ++  EG+ +  ECQ+   P P + W R    +  +T  +        N  
Sbjct: 15  APMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQ---DNTG 71

Query: 68  LVALELDDVIETDAGLYKVKAKNKMGEVAASINLN 102
            V L + DV + DAG Y V A N+ G    +  L+
Sbjct: 72  RVTLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLD 106

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score = 97.7 bits (243), Expect = 2e-24
 Identities = 36/202 (17%), Positives = 62/202 (30%), Gaps = 14/202 (6%)

Query: 6   DFAPSFTQKPQLRQEDEGNRLIFECQLL-CNPKPDIVWFR-GETQLSEDTRTVMKTTPIG 63
           D A S+    Q     EG   +  C +     K  +   R G  Q+   T      +P  
Sbjct: 87  DPAHSWNLLAQEVTVVEGQEAVLPCLITDPALKDSVSLMREGGRQVLRKTVYFF--SPWR 144

Query: 64  TNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQ 123
                    +      D+  Y  K     G  + S  +     ++    P    +PS   
Sbjct: 145 G------FIIRKAKVLDSNTYVCKTMVN-GRESTSTGIWLKVNRVHPEPPQIKLEPSKLV 197

Query: 124 EDDGKRLLFECRIQADPAPTVIWSHSG-VQVKEDKRHKFSIDKDGHSYFASLEIIDVTIE 182
              G+     C          +    G  +++      F  +        +L +  V  +
Sbjct: 198 RIRGEAAQIVCSATNAEVGFNVILKRGDTKLEIPLNSDFQDNYYKKVR--ALSLNAVDFQ 255

Query: 183 DAGKYKVTAKNELGESNATISL 204
           DAG Y   A N++G   AT++ 
Sbjct: 256 DAGIYSCVASNDVGTRTATMNF 277

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score = 86.2 bits (213), Expect = 3e-20
 Identities = 35/249 (14%), Positives = 59/249 (23%), Gaps = 34/249 (13%)

Query: 8   APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKY 67
           AP           + G  +   C         + W    +       T+   +P  T   
Sbjct: 4   APVIEPSGPELVVEPGETVTLRCV----SNGSVEWDGPISPY----WTLDPESPGST--- 52

Query: 68  LVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDG 127
              L   +    + G Y+          + +I+L      +   A ++          +G
Sbjct: 53  ---LTTRNATFKNTGTYRCTELEDPMAGSTTIHLY-----VKDPAHSWNLLAQEVTVVEG 104

Query: 128 KRLLFECRIQA-DPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGK 186
           +  +  C I       +V     G +    K   F     G        I    + D+  
Sbjct: 105 QEAVLPCLITDPALKDSVSLMREGGRQVLRKTVYFFSPWRG------FIIRKAKVLDSNT 158

Query: 187 YKVTAKNELGES-NATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLV 245
           Y         ES +  I L   +   P P     P     P             I C   
Sbjct: 159 YVCKTMVNGRESTSTGIWLKV-NRVHPEP-----PQIKLEPSKLVRIRG-EAAQIVCSAT 211

Query: 246 GEPEPTISW 254
                    
Sbjct: 212 NAEVGFNVI 220

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 114

 Score = 93.2 bits (232), Expect = 2e-24
 Identities = 24/107 (22%), Positives = 43/107 (40%), Gaps = 6/107 (5%)

Query: 112 APTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYF 171
            P  ++ P  ++   G+ +    ++      T  W     Q++E +  K    ++G    
Sbjct: 7   GPQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGS--- 63

Query: 172 ASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGT 218
             L I+    E  G Y +  +N+LG   A ++L     D P P  GT
Sbjct: 64  -KLTILAARQEHCGCYTLLVENKLGSRQAQVNLTV--VDKPDPPAGT 107

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 114

 Score = 78.9 bits (195), Expect = 4e-19
 Identities = 18/101 (17%), Positives = 37/101 (36%), Gaps = 5/101 (4%)

Query: 2   GIAEDFAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTP 61
           G +    P   Q P+ ++   G  +    ++         W +   Q+ E     ++ + 
Sbjct: 1   GSSGSSGPQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSE 60

Query: 62  IGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLN 102
            G+      L +    +   G Y +  +NK+G   A +NL 
Sbjct: 61  NGS-----KLTILAARQEHCGCYTLLVENKLGSRQAQVNLT 96

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens} Length = 99

 Score = 91.2 bits (227), Expect = 7e-24
 Identities = 24/93 (25%), Positives = 36/93 (38%), Gaps = 4/93 (4%)

Query: 112 APTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYF 171
            P  +               F  +   +P PT IW+  G  + +  ++K S DK G    
Sbjct: 6   KPVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGF--- 62

Query: 172 ASLEIIDVTIEDAGKYKVTAKNELGESNATISL 204
             LEI      D+G Y  T KN  G  +++  L
Sbjct: 63  -FLEIHKTDTSDSGLYTCTVKNSAGSVSSSCKL 94

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens} Length = 99

 Score = 75.0 bits (185), Expect = 1e-17
 Identities = 19/94 (20%), Positives = 35/94 (37%), Gaps = 5/94 (5%)

Query: 8   APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKY 67
            P      Q       +   F  +    P+P  +W +    +++  +  +       +K 
Sbjct: 6   KPVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLS-----EDKG 60

Query: 68  LVALELDDVIETDAGLYKVKAKNKMGEVAASINL 101
              LE+     +D+GLY    KN  G V++S  L
Sbjct: 61  GFFLEIHKTDTSDSGLYTCTVKNSAGSVSSSCKL 94

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens} Length = 99

 Score = 37.3 bits (87), Expect = 5e-04
 Identities = 11/44 (25%), Positives = 15/44 (34%), Gaps = 4/44 (9%)

Query: 211 APVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLVGEPEPTISW 254
            P+    +KPV            D +      +  GEP PT  W
Sbjct: 1   GPI---SSKPVIVTGLQDTTVSSD-SVAKFAVKATGEPRPTAIW 40

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4 Length = 99

 Score = 91.2 bits (227), Expect = 7e-24
 Identities = 25/94 (26%), Positives = 39/94 (41%), Gaps = 3/94 (3%)

Query: 112 APTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYF 171
           AP   ++   +    G    F  R+   P P   W  +GV+++   R  +   +D     
Sbjct: 5   APKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDN---V 61

Query: 172 ASLEIIDVTIEDAGKYKVTAKNELGESNATISLN 205
             L I DVT ED+    V A N  GE+++   L 
Sbjct: 62  CELVIRDVTGEDSASIMVKAINIAGETSSHAFLL 95

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4 Length = 99

 Score = 79.2 bits (196), Expect = 3e-19
 Identities = 20/95 (21%), Positives = 38/95 (40%), Gaps = 4/95 (4%)

Query: 8   APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKY 67
           AP   ++ Q +   +G+   F  +++  P P+  W++   ++    R             
Sbjct: 5   APKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDN---- 60

Query: 68  LVALELDDVIETDAGLYKVKAKNKMGEVAASINLN 102
           +  L + DV   D+    VKA N  GE ++   L 
Sbjct: 61  VCELVIRDVTGEDSASIMVKAINIAGETSSHAFLL 95

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X Length = 103

 Score = 91.0 bits (226), Expect = 9e-24
 Identities = 25/97 (25%), Positives = 40/97 (41%), Gaps = 4/97 (4%)

Query: 111 LAPTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHS- 169
            APT     S               ++ +P P + W ++G  + E K     I    H+ 
Sbjct: 3   FAPTITFLESPTS---DHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTE 59

Query: 170 YFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNF 206
           Y   L++ + T  + G Y + AKNE G+    IS +F
Sbjct: 60  YHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHF 96

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X Length = 103

 Score = 79.4 bits (196), Expect = 3e-19
 Identities = 26/97 (26%), Positives = 40/97 (41%), Gaps = 3/97 (3%)

Query: 7   FAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNK 66
           FAP+ T    L      +       +  NPKP + WF     L+E      K       +
Sbjct: 3   FAPTITF---LESPTSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTE 59

Query: 67  YLVALELDDVIETDAGLYKVKAKNKMGEVAASINLNF 103
           Y   L+LD+    + G Y + AKN+ G+    I+ +F
Sbjct: 60  YHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHF 96

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A Length = 93

 Score = 90.5 bits (225), Expect = 1e-23
 Identities = 21/95 (22%), Positives = 27/95 (28%), Gaps = 4/95 (4%)

Query: 111 LAPTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSY 170
           L P  L      +   G     E      P PT  W+                       
Sbjct: 1   LKPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTT-- 58

Query: 171 FASLEIIDVTIEDAGKYKVTAKNELGESNATISLN 205
             S+        D+G YK+  KNELGE  A   + 
Sbjct: 59  --SIFFPSAKRADSGNYKLKVKNELGEDEAIFEVI 91

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A Length = 93

 Score = 76.6 bits (189), Expect = 2e-18
 Identities = 17/95 (17%), Positives = 32/95 (33%), Gaps = 5/95 (5%)

Query: 8   APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKY 67
            P      +  +   G     E   +  P P   W  G++  +     ++          
Sbjct: 2   KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKS-----S 56

Query: 68  LVALELDDVIETDAGLYKVKAKNKMGEVAASINLN 102
             ++        D+G YK+K KN++GE  A   + 
Sbjct: 57  TTSIFFPSAKRADSGNYKLKVKNELGEDEAIFEVI 91

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens} Length = 99

 Score = 90.4 bits (225), Expect = 1e-23
 Identities = 25/94 (26%), Positives = 37/94 (39%), Gaps = 3/94 (3%)

Query: 112 APTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYF 171
            PTF      +   +G+ ++   R+Q +P P V W  +   V+ D+R      + G    
Sbjct: 5   PPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGG---L 61

Query: 172 ASLEIIDVTIEDAGKYKVTAKNELGESNATISLN 205
             L I+     DAG Y   A NE G       L 
Sbjct: 62  CRLRILAAERGDAGFYTCKAVNEYGARQCEARLE 95

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens} Length = 99

 Score = 78.9 bits (195), Expect = 4e-19
 Identities = 23/95 (24%), Positives = 32/95 (33%), Gaps = 4/95 (4%)

Query: 8   APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKY 67
            P+F      +   EG  +I   ++   PKP + W R    +  D R             
Sbjct: 5   PPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFA----EEAEGG 60

Query: 68  LVALELDDVIETDAGLYKVKAKNKMGEVAASINLN 102
           L  L +      DAG Y  KA N+ G       L 
Sbjct: 61  LCRLRILAAERGDAGFYTCKAVNEYGARQCEARLE 95

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X Length = 126

 Score = 88.8 bits (220), Expect = 1e-22
 Identities = 23/123 (18%), Positives = 42/123 (34%), Gaps = 8/123 (6%)

Query: 119 PSIRQEDDGKRLLFEC---RIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDG---HSYFA 172
           P+  Q      +   C    +   PAP++ W  +G  + E         +          
Sbjct: 4   PASVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHG 63

Query: 173 SLEIIDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVF--TERPVTKQ 230
            L +   T  + G Y + A N  G+++A+I   F  +      E   P    T     ++
Sbjct: 64  CLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMDNPFEFNPEDPIPDTNSTSGDPVEK 123

Query: 231 SDD 233
            D+
Sbjct: 124 KDE 126

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X Length = 126

 Score = 66.9 bits (163), Expect = 3e-14
 Identities = 20/95 (21%), Positives = 34/95 (35%), Gaps = 7/95 (7%)

Query: 15  PQLRQEDEGNRLIFECQLLC----NPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLV- 69
           P   Q      +   C +       P P + W    + L+E +    +      N+ +  
Sbjct: 4   PASVQLHTAVEMHHWC-IPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRH 62

Query: 70  -ALELDDVIETDAGLYKVKAKNKMGEVAASINLNF 103
             L L+     + G Y + A N  G+ +ASI   F
Sbjct: 63  GCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAF 97

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 87.4 bits (217), Expect = 3e-22
 Identities = 29/107 (27%), Positives = 44/107 (41%), Gaps = 5/107 (4%)

Query: 112 APTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKED-KRHKFSIDKDGHSY 170
           AP F  K    +  +G  + F CR+  +P P + W   G Q+      +    D DG   
Sbjct: 8   APFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDG--- 64

Query: 171 FASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEG 217
             SL     T++D G Y + A N  G  + T  L   + ++  P  G
Sbjct: 65  TCSLHTTASTLDDDGNYTIMAANPQGRISCTGRLMVQAVNSG-PSSG 110

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 75.5 bits (186), Expect = 8e-18
 Identities = 27/100 (27%), Positives = 42/100 (42%), Gaps = 5/100 (5%)

Query: 4   AEDFAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDT-RTVMKTTPI 62
               AP F  K +  +  EG  + F C++  NPKP I WF+   Q+S  +    ++    
Sbjct: 4   GSSGAPFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLD 63

Query: 63  GTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLN 102
           GT     +L        D G Y + A N  G ++ +  L 
Sbjct: 64  GT----CSLHTTASTLDDDGNYTIMAANPQGRISCTGRLM 99

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 92.4 bits (228), Expect = 1e-21
 Identities = 29/264 (10%), Positives = 74/264 (28%), Gaps = 23/264 (8%)

Query: 6   DFAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPD-IVWFRGETQLS-----------EDT 53
              P      ++   D G  +   C             ++                  + 
Sbjct: 110 SQGPGLLNDTKVYTVDLGRTVTINCPFKTENAQKRKSLYKQIGLYPVLVIDSSGYVNPNY 169

Query: 54  RTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAP 113
              ++    GT + L ++ ++ +  +DAG Y  +A +       + +L   + + + +  
Sbjct: 170 TGRIRLDIQGTGQLLFSVVINQLRLSDAGQYLCQAGDDSNSNKKNADLQVLKPEPELVYE 229

Query: 114 TFLKKPSIR---QEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSY 170
                 +       +      F CR  +     V+ +  G +       +  ++      
Sbjct: 230 DLRGSVTFHCALGPEVANVAKFLCRQSSGENCDVVVNTLG-KRAPAFEGRILLNPQDKDG 288

Query: 171 FASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQ 230
             S+ I  +  EDAG+Y   A ++      +    +             P   +      
Sbjct: 289 SFSVVITGLRKEDAGRYLCGAHSDGQLQEGSPIQAWQLFVNEESTIPRSPTVVKGVAGSS 348

Query: 231 SDDDLNDIVIECRLVGEPEPTISW 254
                  + + C    +   +I +
Sbjct: 349 -------VAVLCPYNRKESKSIKY 365

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 84.7 bits (208), Expect = 6e-19
 Identities = 30/252 (11%), Positives = 72/252 (28%), Gaps = 29/252 (11%)

Query: 19  QEDEGNRLIFECQLLCNPKPDIVWFR-GETQLSEDTRTVMKTTPIGTNKYLVALELDDVI 77
             +  N   F C+       D+V    G+   + + R ++            ++ +  + 
Sbjct: 242 GPEVANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQD---KDGSFSVVITGLR 298

Query: 78  ETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQ 137
           + DAG Y   A +       S    +     +    T  + P++ +   G  +   C   
Sbjct: 299 KEDAGRYLCGAHSDGQLQEGSPIQAWQLFVNE--ESTIPRSPTVVKGVAGSSVAVLCPYN 356

Query: 138 ADPAPTVIW---------------SHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIE 182
              + ++ +                 S   VK     + S+ ++  +   ++ +  +T  
Sbjct: 357 RKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEEPGNGTFTVILNQLTSR 416

Query: 183 DAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIEC 242
           DAG Y      +      T+ +     +  +   G         +              C
Sbjct: 417 DAGFYWCLTNGD-TLWRTTVEIKIIEGEPNLKVPGNVTAVLGETLKVP-------CHFPC 468

Query: 243 RLVGEPEPTISW 254
           +     +    W
Sbjct: 469 KFSSYEKYWCKW 480

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 70.8 bits (172), Expect = 3e-14
 Identities = 35/257 (13%), Positives = 75/257 (29%), Gaps = 21/257 (8%)

Query: 9   PSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIV-WFRGETQLSEDTRTVMKTTPIGTNKY 67
            +  + P + +   G+ +   C         I  W   E   +     ++ +      +Y
Sbjct: 332 STIPRSPTVVKGVAGSSVAVLCPYNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQY 391

Query: 68  -------------LVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPT 114
                           + L+ +   DAG Y                +     + +     
Sbjct: 392 EGRLSLLEEPGNGTFTVILNQLTSRDAGFYWCLTNGDTL---WRTTVEIKIIEGEPNLKV 448

Query: 115 FLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQV---KEDKRHKFSIDKDGHSYF 171
                ++  E       F C+  +       W+++G Q    +++   K  ++ D +S  
Sbjct: 449 PGNVTAVLGETLKVPCHFPCKFSSYEKYWCKWNNTGCQALPSQDEGPSKAFVNCDENSRL 508

Query: 172 ASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQS 231
            SL +  VT  D G Y    K        T ++    ++    G     +        + 
Sbjct: 509 VSLTLNLVTRADEGWYWCGVKQG-HFYGETAAVYVAVEERKAAGSRDVSLAKADAAPDEK 567

Query: 232 DDDLNDIVIECRLVGEP 248
             D     IE + + +P
Sbjct: 568 VLDSGFREIENKAIQDP 584

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 50.8 bits (120), Expect = 1e-07
 Identities = 20/121 (16%), Positives = 34/121 (28%), Gaps = 12/121 (9%)

Query: 134 CRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKN 193
           CR  A      + S  G  V      + ++     +    + I  ++ +D+G+YK     
Sbjct: 38  CRQGARGGCITLISSEG-YVSSKYAGRANLTNFPENGTFVVNIAQLSQDDSGRYKCGLGI 96

Query: 194 ELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLVGEPEPTIS 253
                +  +SL        +       V   R VT           I C    E      
Sbjct: 97  NSRGLSFDVSLEVSQGPGLLNDTKVYTVDLGRTVT-----------INCPFKTENAQKRK 145

Query: 254 W 254
            
Sbjct: 146 S 146

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 99

 Score = 84.7 bits (210), Expect = 2e-21
 Identities = 22/94 (23%), Positives = 40/94 (42%), Gaps = 7/94 (7%)

Query: 112 APTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYF 171
           AP+F          +G+  + +C ++  P P + W  +G  ++  +       + G    
Sbjct: 11  APSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARST----CEAGV--- 63

Query: 172 ASLEIIDVTIEDAGKYKVTAKNELGESNATISLN 205
           A L I D   ED G Y   A+N LG+ + +  + 
Sbjct: 64  AELHIQDALPEDHGTYTCLAENALGQVSCSAWVT 97

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 99

 Score = 73.5 bits (181), Expect = 4e-17
 Identities = 22/95 (23%), Positives = 36/95 (37%), Gaps = 8/95 (8%)

Query: 8   APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKY 67
           APSF+   +     EG   + +C +   P P I W      +     T      +     
Sbjct: 11  APSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARSTC--EAGVAE--- 65

Query: 68  LVALELDDVIETDAGLYKVKAKNKMGEVAASINLN 102
              L + D +  D G Y   A+N +G+V+ S  + 
Sbjct: 66  ---LHIQDALPEDHGTYTCLAENALGQVSCSAWVT 97

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184

 Score = 85.9 bits (212), Expect = 7e-21
 Identities = 33/194 (17%), Positives = 59/194 (30%), Gaps = 31/194 (15%)

Query: 20  EDEGNRLIFECQLLCNPKPDI--VWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVI 77
           ED G++++  C L  +        W +G   L ED     K             E     
Sbjct: 10  EDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALPGQK------------TEFKVDS 57

Query: 78  ETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQ 137
           +   G Y         E   + N+           P      S    ++G+  +  C+ +
Sbjct: 58  DDQWGEYSCVFLP---EPMGTANIQLHG------PPRVKAVKSSEHINEGETAMLVCKSE 108

Query: 138 ADP-APTVIWSHS----GVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIE-DAGKYKVTA 191
           + P      W          +      +F +          L I ++ +E D G+Y+   
Sbjct: 109 SVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRS--ELHIENLNMEADPGQYRCNG 166

Query: 192 KNELGESNATISLN 205
            +  G   A I+L 
Sbjct: 167 TSSKGSDQAIITLR 180

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184

 Score = 50.0 bits (119), Expect = 8e-08
 Identities = 16/97 (16%), Positives = 35/97 (36%), Gaps = 3/97 (3%)

Query: 9   PSFTQKPQLRQEDEGNRLIFECQLLCNPKP-DIVWFRGETQLSEDTRTVMKT-TPIGTNK 66
           P           +EG   +  C+    P   D  W++      +      ++   + +++
Sbjct: 84  PRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQ 143

Query: 67  YLVALELDDV-IETDAGLYKVKAKNKMGEVAASINLN 102
               L ++++ +E D G Y+    +  G   A I L 
Sbjct: 144 GRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLR 180

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349

 Score = 89.2 bits (220), Expect = 8e-21
 Identities = 31/254 (12%), Positives = 65/254 (25%), Gaps = 31/254 (12%)

Query: 22  EGNRLIFECQLLC-----------NPKPDIVWFR--GETQLSEDTRTVMKTTPIGTNKYL 68
           E      +C L             +    ++W+    +  L E     +    I   K  
Sbjct: 21  EDEPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKEKD- 79

Query: 69  VALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDGK 128
             L     +  D G Y    +N       +  L   ++     +P  L    +  E   +
Sbjct: 80  -VLWFRPTLLNDTGNYTCMLRNTTYCSKVAFPLEVVQKDSCFNSPMKLPVHKLYIEYGIQ 138

Query: 129 RLL---FECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAG 185
           R+     +    +   PT+ W     +++                  +L  +   I + G
Sbjct: 139 RITCPNVDGYFPSSVKPTITWYMGCYKIQNFNNVIPEGM--------NLSFLIALISNNG 190

Query: 186 KYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFT-ERPVTKQSDDDLNDIVIECR- 243
            Y              ++          P     PV            +   +++I C  
Sbjct: 191 NYTCVVTYPENGRTFHLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEELLIPCTV 250

Query: 244 ---LVGEPEPTISW 254
               + +    + W
Sbjct: 251 YFSFLMDSRNEVWW 264

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349

 Score = 81.5 bits (200), Expect = 4e-18
 Identities = 33/218 (15%), Positives = 65/218 (29%), Gaps = 31/218 (14%)

Query: 9   PSFTQKPQLRQEDEGNRLIFEC-QLLC----NPKPDIVWFRGETQLSEDTRTVMKTTPIG 63
            S  + P  +   E       C  +      + KP I W+ G  ++      + +     
Sbjct: 121 NSPMKLPVHKLYIEYGIQRITCPNVDGYFPSSVKPTITWYMGCYKIQNFNNVIPEGM--- 177

Query: 64  TNKYLVALELDDVIETDAGLYKVKAK----NKMGEVAASINLNFSREQIDGLAPTFL--K 117
                  L     + ++ G Y          +   +  ++ +       + + P      
Sbjct: 178 ------NLSFLIALISNNGNYTCVVTYPENGRTFHLTRTLTVKVVGSPKNAVPPVIHSPN 231

Query: 118 KPSIRQEDDGKRLLFECRI----QADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYF-- 171
              + +++ G+ LL  C +      D    V W+  G +  +        +   HS    
Sbjct: 232 DHVVYEKEPGEELLIPCTVYFSFLMDSRNEVWWTIDGKKPDDITIDVTINESISHSRTED 291

Query: 172 ----ASLEIIDVTIED-AGKYKVTAKNELGESNATISL 204
                 L I  VT ED    Y   A++  GE      +
Sbjct: 292 ETRTQILSIKKVTSEDLKRSYVCHARSAKGEVAKAAKV 329

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A Length = 100

 Score = 82.9 bits (205), Expect = 1e-20
 Identities = 24/98 (24%), Positives = 39/98 (39%), Gaps = 7/98 (7%)

Query: 112 APTFLKKPSIRQED----DGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDG 167
           AP +     + +          + F C    +P PT+ W  +G + K++ R      ++ 
Sbjct: 4   APYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQ 63

Query: 168 HSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLN 205
           H    SL +  V   D G Y    +NE G  N T  L+
Sbjct: 64  HW---SLIMESVVPSDKGNYTCVVENEYGSINHTYHLD 98

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A Length = 100

 Score = 69.4 bits (170), Expect = 1e-15
 Identities = 19/99 (19%), Positives = 39/99 (39%), Gaps = 8/99 (8%)

Query: 8   APSFTQKPQLRQED----EGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIG 63
           AP +T   ++ +        N + F C    NP P + W +   +  ++ R         
Sbjct: 4   APYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQ 63

Query: 64  TNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLN 102
                  L ++ V+ +D G Y    +N+ G +  + +L+
Sbjct: 64  HWS----LIMESVVPSDKGNYTCVVENEYGSINHTYHLD 98

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329

 Score = 88.0 bits (217), Expect = 2e-20
 Identities = 28/208 (13%), Positives = 56/208 (26%), Gaps = 18/208 (8%)

Query: 8   APSFTQKPQLRQEDEGNRLIFECQLL-CNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNK 66
            PS   +       +   +   C +L      +I W++   +L  D     ++       
Sbjct: 128 PPSCIPETYELGTHDKYGIDLYCGILYAKHYNNITWYKNNQELIIDGTKYSQSGQN---- 183

Query: 67  YLVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSRE---QIDGLAPTFLKKPSIRQ 123
               L + +    D+G Y          +   I ++  +             L       
Sbjct: 184 ----LIIHNPELEDSGRYDCYVHYDDVRIKNDIVVSRCKILTVIPSQDHRFKLILDPKIN 239

Query: 124 EDDGKRLLFECRIQADPAP----TVIWSHSGVQVKEDKRHKFSIDKDGHSYF-ASLEIID 178
              G+     C   +         + W +    +       +SI         A+L   +
Sbjct: 240 VTIGEPANITCTAVSTSLLVDDVLIDWENPSGWIIGLDFGVYSILTSSGGITEATLYFEN 299

Query: 179 VTIEDAGK-YKVTAKNELGESNATISLN 205
           VT E  G  Y     N   +   T ++ 
Sbjct: 300 VTEEYIGNTYTCRGHNYYFDKTLTTTVV 327

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329

 Score = 76.8 bits (188), Expect = 2e-16
 Identities = 35/248 (14%), Positives = 68/248 (27%), Gaps = 39/248 (15%)

Query: 22  EGNRLIFECQLL---------CNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALE 72
            G     +C  +          +    + W +         R V              L 
Sbjct: 43  LGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRRPLNRRVKNGD----------LW 92

Query: 73  LDDVIETDAG-LYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLL 131
           + +    D+   Y      K G+    I  +  R+      P+ + +       D   + 
Sbjct: 93  IANYTSNDSHRRYLCTVTTKNGDCVQGIVRSHIRK-----PPSCIPETYELGTHDKYGID 147

Query: 132 FECRI-QADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVT 190
             C I  A     + W  +  ++  D   K+S          +L I +  +ED+G+Y   
Sbjct: 148 LYCGILYAKHYNNITWYKNNQELIIDGT-KYSQSGQ------NLIIHNPELEDSGRYDCY 200

Query: 191 AKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLVGEPEP 250
              +       I ++       +P +  +      P    +  +     I C  V     
Sbjct: 201 VHYDDVRIKNDIVVSRCKILTVIPSQDHRFKLILDPKINVTIGE--PANITCTAVSTSLL 258

Query: 251 ----TISW 254
                I W
Sbjct: 259 VDDVLIDW 266

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214

 Score = 84.4 bits (208), Expect = 5e-20
 Identities = 26/210 (12%), Positives = 56/210 (26%), Gaps = 40/210 (19%)

Query: 22  EGNRLIFECQLLCNPKP----DIVWFRGETQLSE---------------------DTRTV 56
           +G      C+   +P+     DI W    +                           R  
Sbjct: 14  KGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGRVH 73

Query: 57  MKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFL 116
             +  + +     ++ + ++  +D G Y+ K K   G       L         + P+  
Sbjct: 74  FTSNDVKSGD--ASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVL------VKPSGT 125

Query: 117 KKPSIRQEDDGKRLLFECRIQA-DPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLE 175
           +      E+ G     +C  +         W                           + 
Sbjct: 126 RCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTPWLA-EMTSP-----VIS 179

Query: 176 IIDVTIEDAGKYKVTAKNELGESNATISLN 205
           + + + E +G Y  T +N +G     + L+
Sbjct: 180 VKNASSEYSGTYSCTVQNRVGSDQCMLRLD 209

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214

 Score = 53.5 bits (128), Expect = 6e-09
 Identities = 27/154 (17%), Positives = 42/154 (27%), Gaps = 38/154 (24%)

Query: 127 GKRLLFECRIQADPAPT----VIWSHSGVQVKE---------------------DKRHKF 161
           G+     C+    P       + W  S    +                        R  F
Sbjct: 15  GETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGRVHF 74

Query: 162 SIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPV 221
           +   D  S  AS+ + ++ + D G Y+   K   G +N    L              KP 
Sbjct: 75  T-SNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLV----------KPS 123

Query: 222 FTERPVTKQSDDDLNDIVIECRLV-GEPEPTISW 254
            T   V    +   ND  ++C    G       W
Sbjct: 124 GTRCFVDGSEEIG-NDFKLKCEPKEGSLPLQFEW 156

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214

 Score = 52.0 bits (124), Expect = 2e-08
 Identities = 16/97 (16%), Positives = 35/97 (36%), Gaps = 10/97 (10%)

Query: 8   APSFTQKPQLRQEDEGNRLIFECQLLC-NPKPDIVWFR-GETQLSEDTRTVMKTTPIGTN 65
            PS T+      E+ GN    +C+    +      W +  ++Q          T+P+   
Sbjct: 121 KPSGTRCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTPWLAEMTSPV--- 177

Query: 66  KYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLN 102
                + + +     +G Y    +N++G     + L+
Sbjct: 178 -----ISVKNASSEYSGTYSCTVQNRVGSDQCMLRLD 209

>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A Length = 137

 Score = 82.0 bits (202), Expect = 6e-20
 Identities = 17/102 (16%), Positives = 35/102 (34%), Gaps = 9/102 (8%)

Query: 112 APTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYF 171
              F++ P  +Q   G  +   C     P P + W   G    +     +   +    + 
Sbjct: 21  MAGFVQAPLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARLDRVHI 80

Query: 172 ---------ASLEIIDVTIEDAGKYKVTAKNELGESNATISL 204
                    +++ I  +  ED G Y+  A N+   ++ T + 
Sbjct: 81  HATYHQHAASTISIDTLVEEDTGTYECRASNDPDRNHLTRAP 122

>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A Length = 137

 Score = 72.4 bits (177), Expect = 3e-16
 Identities = 17/102 (16%), Positives = 35/102 (34%), Gaps = 8/102 (7%)

Query: 8   APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKY 67
              F Q P  +Q   G  +   C+ + +P P+I W+      ++    +     +     
Sbjct: 21  MAGFVQAPLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARLDRVHI 80

Query: 68  LVA--------LELDDVIETDAGLYKVKAKNKMGEVAASINL 101
                      + +D ++E D G Y+ +A N       +   
Sbjct: 81  HATYHQHAASTISIDTLVEEDTGTYECRASNDPDRNHLTRAP 122

>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A Length = 137

 Score = 44.6 bits (105), Expect = 4e-06
 Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 1/42 (2%)

Query: 213 VPGEGTKPVFTERPVTKQSDDDLNDIVIECRLVGEPEPTISW 254
           VP       F + P+++Q       + + C  VG P P I W
Sbjct: 15  VPRGSHMAGFVQAPLSQQRWVG-GSVELHCEAVGSPVPEIQW 55

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} Length = 108

 Score = 80.5 bits (199), Expect = 1e-19
 Identities = 22/98 (22%), Positives = 36/98 (36%), Gaps = 6/98 (6%)

Query: 108 IDGLAPTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDG 167
           ++ +APT       +    G+ +   C    +P P ++W      + ED         DG
Sbjct: 6   LERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLK---DG 62

Query: 168 HSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLN 205
           +    +L I  V  ED G Y   A + LG +       
Sbjct: 63  NR---NLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFI 97

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} Length = 108

 Score = 68.9 bits (169), Expect = 2e-15
 Identities = 23/95 (24%), Positives = 36/95 (37%), Gaps = 7/95 (7%)

Query: 8   APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKY 67
           AP+ T   + +    G  +   C    NP P I+WF+    L ED+  V+          
Sbjct: 10  APTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVL-KDGNRN--- 65

Query: 68  LVALELDDVIETDAGLYKVKAKNKMGEVAASINLN 102
              L +  V + D GLY  +A + +G         
Sbjct: 66  ---LTIRRVRKEDEGLYTCQACSVLGCAKVEAFFI 97

>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201

 Score = 83.2 bits (205), Expect = 1e-19
 Identities = 31/196 (15%), Positives = 53/196 (27%), Gaps = 27/196 (13%)

Query: 23  GNRLIFECQLL---CNPKPDIVWFR---GETQLSEDT------------RTVMKTTPIGT 64
           G R+            P+ ++ WF+   GE Q+                R          
Sbjct: 6   GERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSAN 65

Query: 65  NKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQE 124
             +LV   +     +  G Y  + K    EV    +L+  +        T        Q 
Sbjct: 66  TFFLV---VTAANISHDGNYLCRMKLGETEVTKQEHLSVVK------PLTLSVHSERSQF 116

Query: 125 DDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDA 184
            D   L   C + A P P V W                + K+     +    + +     
Sbjct: 117 PDFSVLTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGGVMKEKDGSLSVAVDLSLPKPWH 176

Query: 185 GKYKVTAKNELGESNA 200
                  KN+  E++ 
Sbjct: 177 LPVTCVGKNDKEEAHG 192

>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201

 Score = 63.1 bits (153), Expect = 3e-12
 Identities = 24/146 (16%), Positives = 41/146 (28%), Gaps = 31/146 (21%)

Query: 127 GKRLLFEC---RIQADPAPTVIWSHSGVQVKED---------------KRHKFSIDKDGH 168
           G+R+       R+   P   V W   G   ++                 R  F I +  +
Sbjct: 6   GERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSAN 65

Query: 169 SYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVT 228
           ++   L +    I   G Y    K    E      L+        P        +     
Sbjct: 66  TF--FLVVTAANISHDGNYLCRMKLGETEVTKQEHLS-----VVKP-----LTLSVHSER 113

Query: 229 KQSDDDLNDIVIECRLVGEPEPTISW 254
            Q  D  + + + C +   P P + W
Sbjct: 114 SQFPDF-SVLTVTCTVNAFPHPHVQW 138

>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201

 Score = 54.7 bits (131), Expect = 2e-09
 Identities = 12/89 (13%), Positives = 22/89 (24%), Gaps = 1/89 (1%)

Query: 9   PSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYL 68
            + +   +  Q  + + L   C +   P P + W   E      T           +  L
Sbjct: 105 LTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGGVM-KEKDGSL 163

Query: 69  VALELDDVIETDAGLYKVKAKNKMGEVAA 97
                  + +          KN   E   
Sbjct: 164 SVAVDLSLPKPWHLPVTCVGKNDKEEAHG 192

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184

 Score = 81.6 bits (201), Expect = 3e-19
 Identities = 21/196 (10%), Positives = 50/196 (25%), Gaps = 40/196 (20%)

Query: 22  EGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVA----------- 70
           +G+ +   C           W           +    T                      
Sbjct: 9   KGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNF 68

Query: 71  -LELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKR 129
            L + ++   D+  Y  + +++  EV           Q+     T      + Q   G+ 
Sbjct: 69  PLIIKNLKIEDSDTYICEVEDQKEEV-----------QLLVFGLTANSDTHLLQ---GQS 114

Query: 130 LLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKV 189
           L          +P+V       +  +  +              +L +  + ++D+G +  
Sbjct: 115 LTLTLESPPGSSPSVQCRSPRGKNIQGGK--------------TLSVSQLELQDSGTWTC 160

Query: 190 TAKNELGESNATISLN 205
           T      +    I + 
Sbjct: 161 TVLQNQKKVEFKIDIV 176

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184

 Score = 59.6 bits (144), Expect = 3e-11
 Identities = 15/142 (10%), Positives = 33/142 (23%), Gaps = 34/142 (23%)

Query: 127 GKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYF-------------AS 173
           G  +   C      +    W +S        +  F                         
Sbjct: 10  GDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFP 69

Query: 174 LEIIDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPV-PGEGTKPVFTERPVTKQSD 232
           L I ++ IED+  Y    +++  E    +     + D  +  G+                
Sbjct: 70  LIIKNLKIEDSDTYICEVEDQKEEVQLLVFGLTANSDTHLLQGQ---------------- 113

Query: 233 DDLNDIVIECRLVGEPEPTISW 254
                + +         P++  
Sbjct: 114 ----SLTLTLESPPGSSPSVQC 131

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 79.7 bits (197), Expect = 3e-19
 Identities = 24/121 (19%), Positives = 45/121 (37%), Gaps = 13/121 (10%)

Query: 88  AKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQE---DDGKRLLFECRIQADPAPTV 144
           +    G +A  + +    E      P       +RQ      G++L      Q  P P V
Sbjct: 2   SSGSSGTLAQPVTIREIAE-----PPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQV 56

Query: 145 IWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISL 204
           +W+  G  +   + H  + D D         +      D+G+Y+++ + E  +  ATI +
Sbjct: 57  VWTKGGAPLDTSRVHVRTSDFD-----TVFFVRQAARSDSGEYELSVQIENMKDTATIRI 111

Query: 205 N 205
            
Sbjct: 112 R 112

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 64.7 bits (158), Expect = 1e-13
 Identities = 20/98 (20%), Positives = 37/98 (37%), Gaps = 9/98 (9%)

Query: 8   APSFTQKPQLRQE---DEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGT 64
            P       LRQ      G +L         P+P +VW +G   L    R  ++T+   T
Sbjct: 21  PPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAPLDTS-RVHVRTSDFDT 79

Query: 65  NKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLN 102
                   +     +D+G Y++  + +  +  A+I + 
Sbjct: 80  V-----FFVRQAARSDSGEYELSVQIENMKDTATIRIR 112

>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302

 Score = 83.2 bits (205), Expect = 5e-19
 Identities = 30/201 (14%), Positives = 55/201 (27%), Gaps = 21/201 (10%)

Query: 9   PSFTQKPQLRQEDEGNRLIFECQLLC-NPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKY 67
           P  T + Q  Q       +  C      P   I W      +   ++     +  GT   
Sbjct: 118 PQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQVPGFLS--GTVTV 175

Query: 68  LVALELDDVIETDAGLYKVKAKNKMGE--VAASINLNFSREQIDGLAPTFLKKPSIRQED 125
                L    + D      K +++  E     ++NL      +       +         
Sbjct: 176 TSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLT-----VYYPPEVSISGYDNNWYL 230

Query: 126 DGKRLLFECRIQADPAPT-VIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDA 184
                   C  +++P PT   WS +   +       F++ +        L I  V     
Sbjct: 231 GQNEATLTCDARSNPEPTGYNWSTTMGPLPP-----FAVAQGA-----QLLIRPVDKPIN 280

Query: 185 GKYKVTAKNELGESNATISLN 205
                   N LG   A +++ 
Sbjct: 281 TTLICNVTNALGARQAELTVQ 301

>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302

 Score = 72.1 bits (176), Expect = 6e-15
 Identities = 37/270 (13%), Positives = 67/270 (24%), Gaps = 46/270 (17%)

Query: 11  FTQKPQLRQEDEGNRLIFECQLLCNPKPD-----IVWFR-------------GETQLSED 52
             Q P       G+ +   C L            + W R                  SE 
Sbjct: 3   VVQAPTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSES 62

Query: 53  TRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNK-MGEVAASINLNFSREQIDGL 111
            R       +G      +L +  +   D G Y         G  +  I L          
Sbjct: 63  KRLEFVAARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVL------A 116

Query: 112 APTFLKKPSIRQEDDGKRLLFECR-IQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSY 170
            P    +    Q       +  C      P   + W      +    +    +     + 
Sbjct: 117 KPQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQVPGFLSGTV-TV 175

Query: 171 FASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQ 230
            +   ++  +  D        ++E  E    +++N               V+    V+  
Sbjct: 176 TSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLT-------------VYYPPEVSIS 222

Query: 231 SDDDL-----NDIVIECRLVGEPEPT-ISW 254
             D+      N+  + C     PEPT  +W
Sbjct: 223 GYDNNWYLGQNEATLTCDARSNPEPTGYNW 252

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} Length = 250

 Score = 82.3 bits (202), Expect = 6e-19
 Identities = 36/246 (14%), Positives = 58/246 (23%), Gaps = 51/246 (20%)

Query: 9   PSFTQKPQLRQEDEGNRLIFECQLLC---NPKPDIVWFRGETQLSEDTRTVMKTTPIGTN 65
            +        +   G  +   C          P I W +G +               G  
Sbjct: 3   MTVRTTHTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEG 62

Query: 66  KYLVA------------------------LELDDVIETDAGLYKVKAKNK-----MGEVA 96
              V                         L L  V   D G Y  +          G  A
Sbjct: 63  LGFVESDSYKESFGDFLGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDA 122

Query: 97  ASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKED 156
            S+ L  +           +    + Q D+G  +   C         V W       +  
Sbjct: 123 KSVVLKVTGH--TPSNNVHVSTAEVVQVDEGNDITMTCPCTDCANANVTWYTGPTFFENY 180

Query: 157 KR----HKFSIDKDGHSYF-------------ASLEIIDVTIEDAGKYKVTAKNELGESN 199
           +        + ++ G ++F              +L I    I DAG+         GE +
Sbjct: 181 ETGTYQPLANKNQFGITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGELD 240

Query: 200 ATISLN 205
           A  S  
Sbjct: 241 ADRSST 246

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} Length = 250

 Score = 53.4 bits (127), Expect = 1e-08
 Identities = 22/156 (14%), Positives = 39/156 (25%), Gaps = 30/156 (19%)

Query: 127 GKRLLFECRIQA---DPAPTVIWSHSGVQVKEDKRHK--FSIDKDGHSYF---------- 171
           G  +   C  Q       P + W       +  K  K  ++   +G  +           
Sbjct: 17  GGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFG 76

Query: 172 -------------ASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGT 218
                         +L +  V  +D G+Y          +   +     S    V G   
Sbjct: 77  DFLGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLD--AKSVVLKVTGHTP 134

Query: 219 KPVFTERPVTKQSDDDLNDIVIECRLVGEPEPTISW 254
                         D+ NDI + C         ++W
Sbjct: 135 SNNVHVSTAEVVQVDEGNDITMTCPCTDCANANVTW 170

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 126

 Score = 78.5 bits (193), Expect = 1e-18
 Identities = 18/102 (17%), Positives = 37/102 (36%), Gaps = 8/102 (7%)

Query: 112 APTFLKKPSIRQEDDGKRLLFECRIQADP---APTVIWSHSGVQVKEDK-----RHKFSI 163
              F++KP       G+ + F  +++A+     PT+ W          K     + K + 
Sbjct: 7   GILFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETF 66

Query: 164 DKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLN 205
           ++    Y   ++II      AG Y+     +    + +  L 
Sbjct: 67  ERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLE 108

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 126

 Score = 71.6 bits (175), Expect = 4e-16
 Identities = 22/108 (20%), Positives = 39/108 (36%), Gaps = 7/108 (6%)

Query: 2   GIAEDFAPSFTQKPQLRQEDEGNRLIFECQLLCNP---KPDIVWFRG---ETQLSEDTRT 55
           G +      F +KPQ      G  + F  ++       KP I WF+G   +         
Sbjct: 1   GSSGSSGILFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHL 60

Query: 56  VMKTTP-IGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLN 102
            +K T    +  Y   +++    +  AG Y+ +   K    + S +L 
Sbjct: 61  QLKETFERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLE 108

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} Length = 215

 Score = 80.3 bits (198), Expect = 2e-18
 Identities = 28/151 (18%), Positives = 49/151 (32%), Gaps = 14/151 (9%)

Query: 112 APTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYF 171
           AP      ++   + G ++   C + A P+ T+ W   G  +         I     +  
Sbjct: 19  APKLQGPVAVYTWE-GNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNIKIYNTPSA-- 75

Query: 172 ASLEIIDVTIEDAGKYKVTAKNELGESNATISLN-FDSDDAPVPGEGTKPVFTERPVT-- 228
           + LE+   +  D G Y  TA N +G+ +    L   D+  +P   +              
Sbjct: 76  SYLEVTPDSENDFGNYNCTAVNRIGQESLEFILVQADTPSSPSIDQVEP---YSSTAQVQ 132

Query: 229 -KQSDDDLN----DIVIECRLVGEPEPTISW 254
             + +            E R VGE      W
Sbjct: 133 FDEPEATGGVPILKYKAEWRAVGEEVWHSKW 163

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} Length = 215

 Score = 67.9 bits (166), Expect = 5e-14
 Identities = 46/223 (20%), Positives = 75/223 (33%), Gaps = 38/223 (17%)

Query: 7   FAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNK 66
           +AP   Q P      EGN++   C++   P   I WFR    L     + +K   I    
Sbjct: 18  YAPKL-QGPVAVYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNIK---IYNTP 73

Query: 67  YLVALELDDVIETDAGLYKVKAKNKMGEVAASINLN-------FSREQIDGLAPTFL--- 116
               LE+    E D G Y   A N++G+ +    L         S +Q++  + T     
Sbjct: 74  SASYLEVTPDSENDFGNYNCTAVNRIGQESLEFILVQADTPSSPSIDQVEPYSSTAQVQF 133

Query: 117 KKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKE-DKRHKFSID--KDGHSYFAS 173
            +P    E  G   + + + +       +W       KE       +I   K   +Y   
Sbjct: 134 DEP----EATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASMEGIVTIVGLKPETTY--- 186

Query: 174 LEIIDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGE 216
                         ++ A N  G    + +  F +   PV GE
Sbjct: 187 ------------AVRLAALNGKGLGEISAASEFKTQ--PVQGE 215

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 77.5 bits (191), Expect = 2e-18
 Identities = 19/93 (20%), Positives = 32/93 (34%), Gaps = 6/93 (6%)

Query: 112 APTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYF 171
            P   + P  +        +  C     P PT++W   GV V           ++G    
Sbjct: 8   PPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSR-IKQLENG---- 62

Query: 172 ASLEIIDVTIEDAGKYKVTAKNELGESNATISL 204
             L+I    + D G+Y   A    GE+  +  +
Sbjct: 63  -VLQIRYAKLGDTGRYTCIASTPSGEATWSAYI 94

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 65.9 bits (161), Expect = 5e-14
 Identities = 19/94 (20%), Positives = 29/94 (30%), Gaps = 7/94 (7%)

Query: 8   APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKY 67
            P   Q P  +        +  C    +P P I+W +    +S      +K    G    
Sbjct: 8   PPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDS-RIKQLENGV--- 63

Query: 68  LVALELDDVIETDAGLYKVKAKNKMGEVAASINL 101
              L++      D G Y   A    GE   S  +
Sbjct: 64  ---LQIRYAKLGDTGRYTCIASTPSGEATWSAYI 94

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 39.0 bits (91), Expect = 2e-04
 Identities = 14/42 (33%), Positives = 17/42 (40%), Gaps = 1/42 (2%)

Query: 213 VPGEGTKPVFTERPVTKQSDDDLNDIVIECRLVGEPEPTISW 254
             G    PV  + PV +    D    V+ C   G P PTI W
Sbjct: 2   SSGSSGPPVIRQGPVNQTVAVD-GTFVLSCVATGSPVPTILW 42

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290

 Score = 81.3 bits (200), Expect = 2e-18
 Identities = 27/202 (13%), Positives = 50/202 (24%), Gaps = 13/202 (6%)

Query: 9   PSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQ-LSEDTRTVMKTTPIGTNKY 67
                        E +  +  C L             + + L  D   V           
Sbjct: 92  AKLFLVGLPLFGKEDSDALVRCPLTDPQVSQYSLIECDGKSLPTDLTFV-----PNPKAG 146

Query: 68  LVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDG 127
           +     +          +  A+   G    S        +     P      +      G
Sbjct: 147 I--TIKNVKRAYHRLCVRCAAQRD-GTWLHSDKFTLKVREAIKAIPVVSVPETSHLLKKG 203

Query: 128 KRLLFECRIQADPAP-TVIWSHSGVQVKEDKRHKFSIDKDG---HSYFASLEIIDVTIED 183
                 C I+        +W     Q +   + K +    G   +    +L I    ++D
Sbjct: 204 DTFTVVCTIKDVSTSVNSMWLKMNPQPQHIAQVKHNSWHRGDFNYERQETLTISSARVDD 263

Query: 184 AGKYKVTAKNELGESNATISLN 205
           +G +   A N  G +N T +L 
Sbjct: 264 SGVFMCYANNTFGSANVTTTLK 285

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290

 Score = 55.5 bits (133), Expect = 2e-09
 Identities = 27/255 (10%), Positives = 50/255 (19%), Gaps = 43/255 (16%)

Query: 4   AEDFAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIG 63
            E   PS          + G+ L   C         + W           +T        
Sbjct: 8   GEPSPPSIHPAQSELIVEAGDTLSLTCI----DPDFVRWTF---------KTYFNEMVEN 54

Query: 64  TNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQ 123
                +    +    T  G Y     N +    +SI +                      
Sbjct: 55  KKNEWI---QEKAEATRTGTYTCSNSNGLT---SSIYVFVRD------PAKLFLVGLPLF 102

Query: 124 EDDGKRLLFECRIQADPAPTVIWSH-SGVQVKEDKRHKFSIDKDGHSYFASLEIIDVT-I 181
             +    L  C +              G  +  D     +           + I +V   
Sbjct: 103 GKEDSDALVRCPLTDPQVSQYSLIECDGKSLPTDLTFVPNPKA-------GITIKNVKRA 155

Query: 182 EDAGKYKVTAKNELGESN-ATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVI 240
                 +  A+ +    +    +L        V            P T       +   +
Sbjct: 156 YHRLCVRCAAQRDGTWLHSDKFTLK-------VREAIKAIPVVSVPETSHLLKKGDTFTV 208

Query: 241 ECRLVGEPEP-TISW 254
            C +          W
Sbjct: 209 VCTIKDVSTSVNSMW 223

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290

 Score = 54.4 bits (130), Expect = 6e-09
 Identities = 22/150 (14%), Positives = 37/150 (24%), Gaps = 35/150 (23%)

Query: 111 LAPTFLKKPSIRQEDD------GKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSID 164
            +P     PSI           G  L   C         V W+       +   ++   +
Sbjct: 5   ASPGEPSPPSIHPAQSELIVEAGDTLSLTCIDP----DFVRWTF------KTYFNEMVEN 54

Query: 165 KDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTE 224
           K                   G Y  +  N L    ++I +     D         P+F +
Sbjct: 55  KKN-----EWIQEKAEATRTGTYTCSNSNGLT---SSIYVFV--RDPAKLFLVGLPLFGK 104

Query: 225 RPVTKQSDDDLNDIVIECRLVGEPEPTISW 254
                      +D ++ C L        S 
Sbjct: 105 ED---------SDALVRCPLTDPQVSQYSL 125

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289

 Score = 80.5 bits (198), Expect = 4e-18
 Identities = 20/194 (10%), Positives = 51/194 (26%), Gaps = 19/194 (9%)

Query: 13  QKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALE 72
            +       E   +   C++  +P+  +     +  ++       +    G         
Sbjct: 100 AEELFIFLTEITEITIPCRVT-DPQLVVTLHEKKGDVALPVPYDHQRGFSGIF------- 151

Query: 73  LDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLF 132
                  +   Y  K      EV +     +   ++   +              G+ +  
Sbjct: 152 -------EDRSYICKTTIGDREVDSDAYYVY---RLQVSSINVSVNAVQTVVRQGENITL 201

Query: 133 ECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFAS-LEIIDVTIEDAGKYKVTA 191
            C +  +      W++   +             D   +  S L I    +ED+G Y    
Sbjct: 202 MCIVIGNEVVNFEWTYPRKESGRLVEPVTDFLLDMPYHIRSILHIPSAELEDSGTYTCNV 261

Query: 192 KNELGESNATISLN 205
              + +     ++N
Sbjct: 262 TESVNDHQDEKAIN 275

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289

 Score = 68.2 bits (166), Expect = 1e-13
 Identities = 31/236 (13%), Positives = 63/236 (26%), Gaps = 37/236 (15%)

Query: 22  EGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDA 81
             +  +  C         +VW R   +  ++       T          L L ++   D 
Sbjct: 14  VSSTFVLTCS----GSAPVVWERMSQEPPQEMAKAQDGTFSSV------LTLTNLTGLDT 63

Query: 82  GLYKVKAKNKMGEV---AASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQA 138
           G Y     +  G        + + F  +   G  P    +       +   +   CR+  
Sbjct: 64  GEYFCTHNDSRGLETDERKRLYI-FVPDPTVGFLPND-AEELFIFLTEITEITIPCRV-T 120

Query: 139 DPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGES 198
           DP   V         ++       +  D    F         I +   Y         E 
Sbjct: 121 DPQLVVTL------HEKKGDVALPVPYDHQRGF-------SGIFEDRSYICKTTIGDREV 167

Query: 199 NATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLVGEPEPTISW 254
           ++     +    + +       V   + V +Q ++    I + C ++G       W
Sbjct: 168 DSDAYYVYRLQVSSINVS----VNAVQTVVRQGEN----ITLMCIVIGNEVVNFEW 215

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289

 Score = 53.2 bits (127), Expect = 2e-08
 Identities = 10/94 (10%), Positives = 23/94 (24%)

Query: 9   PSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYL 68
            + +         +G  +   C ++ N   +  W     +       V            
Sbjct: 182 INVSVNAVQTVVRQGENITLMCIVIGNEVVNFEWTYPRKESGRLVEPVTDFLLDMPYHIR 241

Query: 69  VALELDDVIETDAGLYKVKAKNKMGEVAASINLN 102
             L +      D+G Y       + +      +N
Sbjct: 242 SILHIPSAELEDSGTYTCNVTESVNDHQDEKAIN 275

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1 Length = 122

 Score = 76.5 bits (188), Expect = 5e-18
 Identities = 23/129 (17%), Positives = 43/129 (33%), Gaps = 11/129 (8%)

Query: 93  GEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQADPAP-TVIWSHSGV 151
           G   +S  L           P  +     +    G++   +C I++ P P  + WS    
Sbjct: 1   GSSGSSGTLTV-------NGPPIISSTQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKEN 53

Query: 152 QVKEDKRHKFSI--DKDGHSYFASLEIIDVTIED-AGKYKVTAKNELGESNATISLNFDS 208
            ++     ++++          ++L I ++   D    Y  TA N  G     I L    
Sbjct: 54  VLESGTSGRYTVETISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQG 113

Query: 209 DDAPVPGEG 217
            +   P  G
Sbjct: 114 SEMSGPSSG 122

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1 Length = 122

 Score = 51.0 bits (122), Expect = 1e-08
 Identities = 22/97 (22%), Positives = 35/97 (36%), Gaps = 3/97 (3%)

Query: 8   APSFTQKPQLRQEDEGNRLIFECQLLCNPKPD-IVWFRGETQLSEDTRTVMKTTPIGTNK 66
            P      Q +    G +   +C +   P PD I W   E  L   T        I T +
Sbjct: 13  GPPIISSTQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEE 72

Query: 67  YLVA-LELDDVIETD-AGLYKVKAKNKMGEVAASINL 101
            +++ L + +++  D   +Y   A N  G     I L
Sbjct: 73  GVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRL 109

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens} Length = 97

 Score = 75.8 bits (187), Expect = 5e-18
 Identities = 17/95 (17%), Positives = 38/95 (40%), Gaps = 5/95 (5%)

Query: 112 APTFLKKPSIRQEDDGKRLLFECRIQADPAPT-VIWSHSGVQVKEDKRHKFSIDKDGHSY 170
                 +      ++G  + + C+I+     T V W     Q++  ++++ + +      
Sbjct: 1   GAMVSGQIMHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYEDGVAI- 59

Query: 171 FASLEIIDVTIEDAGKYKVTAKNELGESNATISLN 205
              L + D+T  D G Y+    N+ GE ++   L 
Sbjct: 60  ---LYVKDITKLDDGTYRCKVVNDYGEDSSYAELF 91

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens} Length = 97

 Score = 66.2 bits (162), Expect = 2e-14
 Identities = 17/93 (18%), Positives = 36/93 (38%), Gaps = 6/93 (6%)

Query: 11  FTQKPQLRQEDEGNRLIFECQLLCNPKP-DIVWFRGETQLSEDTRTVMKTTPIGTNKYLV 69
            + +      +EG  + + C++    +   + W+ G  QL    +  +          + 
Sbjct: 4   VSGQIMHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITY-----EDGVA 58

Query: 70  ALELDDVIETDAGLYKVKAKNKMGEVAASINLN 102
            L + D+ + D G Y+ K  N  GE ++   L 
Sbjct: 59  ILYVKDITKLDDGTYRCKVVNDYGEDSSYAELF 91

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363

 Score = 81.0 bits (199), Expect = 7e-18
 Identities = 25/252 (9%), Positives = 61/252 (24%), Gaps = 47/252 (18%)

Query: 22  EGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVA----------- 70
           +G+ +   C           W           +    T                      
Sbjct: 8   KGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNF 67

Query: 71  -LELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKR 129
            L + ++   D+  Y  + +++  EV   +              T      + Q   G+ 
Sbjct: 68  PLIIKNLKIEDSDTYICEVEDQKEEVQLLV-----------FGLTANSDTHLLQ---GQS 113

Query: 130 LLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKV 189
           L          +P+V       +  +  +              +L +  + ++D+G +  
Sbjct: 114 LTLTLESPPGSSPSVQCRSPRGKNIQGGK--------------TLSVSQLELQDSGTWTC 159

Query: 190 TAKNELGESNATISLN---FDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLVG 246
           T      +    I +    F    + V  +  + V    P+    +       +  +   
Sbjct: 160 TVLQNQKKVEFKIDIVVLAFQKASSIVYKKEGEQVEFSFPLAFTVEKLTGSGELWWQAER 219

Query: 247 EPEP----TISW 254
                   T   
Sbjct: 220 ASSSKSWITFDL 231

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363

 Score = 75.2 bits (184), Expect = 6e-16
 Identities = 25/245 (10%), Positives = 60/245 (24%), Gaps = 51/245 (20%)

Query: 22  EGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDA 81
           +G  L    +      P +       +  +  +T               L +  +   D+
Sbjct: 110 QGQSLTLTLESPPGSSPSVQCRSPRGKNIQGGKT---------------LSVSQLELQDS 154

Query: 82  GLYKVKAKNKMGEVAASINLN--------FSREQIDGLAPTFLKKPSIRQEDDGKRLLFE 133
           G +         +V   I++             + +G    F    +   E         
Sbjct: 155 GTWTCTVLQNQKKVEFKIDIVVLAFQKASSIVYKKEGEQVEFSFPLAFTVEKLTGSGELW 214

Query: 134 CRIQADPAP----TVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKV 189
            + +   +     T    +  V VK   +              +L         +G   +
Sbjct: 215 WQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTL 274

Query: 190 TAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLVGEPE 249
             + + G+ +  ++L                      V + +    N   + C + G   
Sbjct: 275 ALEAKTGKLHQEVNLV---------------------VMRATQLQKN---LTCEVWGPTS 310

Query: 250 PTISW 254
           P +  
Sbjct: 311 PKLML 315

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363

 Score = 47.1 bits (111), Expect = 2e-06
 Identities = 26/197 (13%), Positives = 57/197 (28%), Gaps = 36/197 (18%)

Query: 10  SFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYL- 68
           SF     + +      L ++ +   + K  I +     ++S    T      +G    L 
Sbjct: 197 SFPLAFTVEKLTGSGELWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLH 256

Query: 69  VALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDGK 128
           + L         +G   +  + K G++   +NL                   +       
Sbjct: 257 LTLPQALPQYAGSGNLTLALEAKTGKLHQEVNL-------------------VVMRATQL 297

Query: 129 RLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYK 188
           +    C +    +P ++ S       E+K  K S            + + V   +AG ++
Sbjct: 298 QKNLTCEVWGPTSPKLMLSLK----LENKEAKVS---------KREKAVWVLNPEAGMWQ 344

Query: 189 VTAKNELGESNATISLN 205
               +        +  N
Sbjct: 345 CLLSD---SGQVLLESN 358

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100

 Score = 75.1 bits (185), Expect = 9e-18
 Identities = 22/94 (23%), Positives = 39/94 (41%), Gaps = 6/94 (6%)

Query: 112 APTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYF 171
            P  L+ P+ +        L +C+   DP P + W   G           +I + G    
Sbjct: 8   PPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPR-ATIQEQG---- 62

Query: 172 ASLEIIDVTIEDAGKYKVTAKNELGESNATISLN 205
            +L+I ++ I D G Y   A +  GE++ +  L+
Sbjct: 63  -TLQIKNLRISDTGTYTCVATSSSGETSWSAVLD 95

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100

 Score = 64.0 bits (156), Expect = 2e-13
 Identities = 21/96 (21%), Positives = 36/96 (37%), Gaps = 9/96 (9%)

Query: 8   APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQL-SEDTRTVMKTTPIGTNK 66
            P   Q P  +        + +C+   +P P I W +        D R  +     GT  
Sbjct: 8   PPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATI--QEQGT-- 63

Query: 67  YLVALELDDVIETDAGLYKVKAKNKMGEVAASINLN 102
               L++ ++  +D G Y   A +  GE + S  L+
Sbjct: 64  ----LQIKNLRISDTGTYTCVATSSSGETSWSAVLD 95

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100

 Score = 39.3 bits (92), Expect = 1e-04
 Identities = 11/42 (26%), Positives = 19/42 (45%), Gaps = 1/42 (2%)

Query: 213 VPGEGTKPVFTERPVTKQSDDDLNDIVIECRLVGEPEPTISW 254
             G    P+  + P  +    D    +++C+  G+P P ISW
Sbjct: 2   SSGSSGPPIILQGPANQTLAVD-GTALLKCKATGDPLPVISW 42

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 75.0 bits (185), Expect = 1e-17
 Identities = 12/90 (13%), Positives = 32/90 (35%), Gaps = 5/90 (5%)

Query: 113 PTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFA 172
              +K    +    G+ +   C +     P V W      +++ +++    +        
Sbjct: 9   AAIIKPLEDQWVAPGEDVELRCELSRAGTP-VHWLKDRKAIRKSQKYDVVCEGTMAM--- 64

Query: 173 SLEIIDVTIEDAGKYKVTAKNELGESNATI 202
            L I   +++DAG+Y    +     ++  +
Sbjct: 65  -LVIRGASLKDAGEYTCEVEASKSTASLHV 93

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 56.2 bits (136), Expect = 1e-10
 Identities = 10/86 (11%), Positives = 26/86 (30%), Gaps = 6/86 (6%)

Query: 9  PSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYL 68
           +  +  + +    G  +   C+L     P + W +    + +  +  +          +
Sbjct: 9  AAIIKPLEDQWVAPGEDVELRCELSRAGTP-VHWLKDRKAIRKSQKYDVV-----CEGTM 62

Query: 69 VALELDDVIETDAGLYKVKAKNKMGE 94
            L +      DAG Y  + +     
Sbjct: 63 AMLVIRGASLKDAGEYTCEVEASKST 88

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262

 Score = 78.8 bits (194), Expect = 1e-17
 Identities = 37/248 (14%), Positives = 68/248 (27%), Gaps = 47/248 (18%)

Query: 9   PSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIV-WFRGETQLSEDTRTVMKTTPIGTNKY 67
              T +P      +   +   C++L  P      WF   T     T +            
Sbjct: 2   AVITLQPPWVSVFQEETVTLHCEVLHLPGSSSTQWFLNGTATQTSTPS------------ 49

Query: 68  LVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDG 127
                +      D+G Y+ +        +  I L   R          L + S R   +G
Sbjct: 50  ---YRITSASVNDSGEYRCQRGL--SGRSDPIQLEIHR-------GWLLLQVSSRVFTEG 97

Query: 128 KRLLFECRIQAD-PAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGK 186
           + L   C    D     V++  +G   K           +      +L I+   I   G 
Sbjct: 98  EPLALRCHAWKDKLVYNVLYYRNGKAFK-------FFHWNS-----NLTILKTNISHNGT 145

Query: 187 YKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLVG 246
           Y  +   +   ++A IS+        V      PV      +   + +   + + C    
Sbjct: 146 YHCSGMGKHRYTSAGISVT-------VKELFPAPVLNASVTSPLLEGN--LVTLSCETKL 196

Query: 247 EPEPTISW 254
             +     
Sbjct: 197 LLQRPGLQ 204

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262

 Score = 65.3 bits (159), Expect = 8e-13
 Identities = 25/194 (12%), Positives = 48/194 (24%), Gaps = 35/194 (18%)

Query: 9   PSFTQKPQLRQEDEGNRLIFECQLLCNPK-PDIVWFRGETQLSEDTRTVMKTTPIGTNKY 67
                +   R   EG  L   C    +    +++++R                       
Sbjct: 83  GWLLLQVSSRVFTEGEPLALRCHAWKDKLVYNVLYYRNGKAFKFFHWN-------SN--- 132

Query: 68  LVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDG 127
              L +     +  G Y      K    +A I++       +      L         +G
Sbjct: 133 ---LTILKTNISHNGTYHCSGMGKHRYTSAGISVTVK----ELFPAPVLNASVTSPLLEG 185

Query: 128 KRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGH-----SYFASLEIIDVTIE 182
             +   C  +       +  +            FS           +  +  +I+    E
Sbjct: 186 NLVTLSCETKLLLQRPGLQLY------------FSFYMGSKTLRGRNTSSEYQILTARRE 233

Query: 183 DAGKYKVTAKNELG 196
           D+G Y   A  E G
Sbjct: 234 DSGLYWCEAATEDG 247

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 115

 Score = 74.7 bits (184), Expect = 2e-17
 Identities = 14/91 (15%), Positives = 31/91 (34%), Gaps = 3/91 (3%)

Query: 104 SREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSI 163
           S   + G     ++        +G    F CRI       V W      +  ++ ++   
Sbjct: 5   SSGLVQGRRVHIIEDLEDVDVQEGSSATFRCRISPANYEPVHWFLDKTPLHANELNEIDA 64

Query: 164 DKDGHSYFASLEIIDVTIEDAGKYKVTAKNE 194
              G   +  L +  + ++D+G     A ++
Sbjct: 65  QPGG---YHVLTLRQLALKDSGTIYFEAGDQ 92

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 115

 Score = 63.6 bits (155), Expect = 2e-13
 Identities = 20/117 (17%), Positives = 38/117 (32%), Gaps = 13/117 (11%)

Query: 3   IAEDFAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPI 62
           + +       +  +     EG+   F C++       + WF  +T L  +    +   P 
Sbjct: 8   LVQGRRVHIIEDLEDVDVQEGSSATFRCRISPANYEPVHWFLDKTPLHANELNEIDAQPG 67

Query: 63  GTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKP 119
           G +     L L  +   D+G    +A    G+  AS  L      +      F +  
Sbjct: 68  GYHV----LTLRQLALKDSGTIYFEA----GDQRASAALR-----VTEKPSVFSRSG 111

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A Length = 108

 Score = 74.7 bits (183), Expect = 2e-17
 Identities = 18/102 (17%), Positives = 31/102 (30%), Gaps = 8/102 (7%)

Query: 112 APTFLKKPSIRQEDDGKRLLFECRIQADP---APTVIW---SHSGVQVKEDKRHKF--SI 163
              F+ +P   +   G  + F  R+        P V W       +  K  +  +   S 
Sbjct: 4   IGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSY 63

Query: 164 DKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLN 205
           D+    Y   L I D      G Y+     +     +  +L 
Sbjct: 64  DRASKVYLFELHITDAQPAFTGSYRCEVSTKDKFDCSNFNLT 105

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A Length = 108

 Score = 69.3 bits (169), Expect = 2e-15
 Identities = 19/105 (18%), Positives = 37/105 (35%), Gaps = 7/105 (6%)

Query: 5   EDFAPSFTQKPQLRQEDEGNRLIFECQLLCNP---KPDIVWFRGE----TQLSEDTRTVM 57
           +D    F  +PQ  +   G  + F  ++        P + WF+G+    +        + 
Sbjct: 1   DDPIGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLH 60

Query: 58  KTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLN 102
            +    +  YL  L + D      G Y+ +   K     ++ NL 
Sbjct: 61  DSYDRASKVYLFELHITDAQPAFTGSYRCEVSTKDKFDCSNFNLT 105

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus} Length = 106

 Score = 74.0 bits (182), Expect = 3e-17
 Identities = 27/106 (25%), Positives = 39/106 (36%), Gaps = 7/106 (6%)

Query: 112 APTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYF 171
               L+  +       ++ +F+C + +D   T  W  +GV+V+  KR   S     H   
Sbjct: 8   QLEVLQDIADLTVKAAEQAVFKCEV-SDEKVTGKWYKNGVEVRPSKRITISHVGRFHK-- 64

Query: 172 ASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEG 217
             L I DV  ED G Y           +A   LNF       P  G
Sbjct: 65  --LVIDDVRPEDEGDYTFVPDGYALSLSAK--LNFLEIKVSGPSSG 106

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus} Length = 106

 Score = 57.8 bits (140), Expect = 3e-11
 Identities = 15/93 (16%), Positives = 30/93 (32%), Gaps = 6/93 (6%)

Query: 8   APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKY 67
                Q           + +F+C++  + K    W++   ++    R  +          
Sbjct: 8   QLEVLQDIADLTVKAAEQAVFKCEV-SDEKVTGKWYKNGVEVRPSKRITISH-----VGR 61

Query: 68  LVALELDDVIETDAGLYKVKAKNKMGEVAASIN 100
              L +DDV   D G Y          ++A +N
Sbjct: 62  FHKLVIDDVRPEDEGDYTFVPDGYALSLSAKLN 94

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score = 73.2 bits (180), Expect = 4e-17
 Identities = 22/108 (20%), Positives = 38/108 (35%), Gaps = 9/108 (8%)

Query: 110 GLAPTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHS 169
           G + +   +        G  L   CR++ D   ++ W   GVQ+ E  R + + +     
Sbjct: 1   GSSGSSGVEVESFLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLAESNRTRITGE----- 54

Query: 170 YFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEG 217
               +E+ D    D+G Y     +  G      S+N        P  G
Sbjct: 55  ---EVEVQDSVPADSGLYACVTSSPSGSDTTYFSVNVSDALPSGPSSG 99

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score = 61.6 bits (150), Expect = 1e-12
 Identities = 21/95 (22%), Positives = 36/95 (37%), Gaps = 10/95 (10%)

Query: 8   APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKY 67
           + S   + +      G+ L   C+L  +    I W R   QL+E  RT +          
Sbjct: 3   SGSSGVEVESFLVHPGDLLQLRCRL-RDDVQSINWLRDGVQLAESNRTRITGE------- 54

Query: 68  LVALELDDVIETDAGLYKVKAKNKMGEVAASINLN 102
              +E+ D +  D+GLY     +  G      ++N
Sbjct: 55  --EVEVQDSVPADSGLYACVTSSPSGSDTTYFSVN 87

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49} Length = 304

 Score = 77.9 bits (191), Expect = 5e-17
 Identities = 39/262 (14%), Positives = 73/262 (27%), Gaps = 52/262 (19%)

Query: 8   APSFTQKPQLRQEDEGNRLIFECQLLCN-PKPDIV---WFRGETQLSEDTRTVMKTTPIG 63
           A + + +   R    G+       +  + P P  +   W + +     +T T        
Sbjct: 2   AFTVSIQSNKRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHENNTAT-------- 53

Query: 64  TNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQ 123
                  L + D    +AG YKV  ++     +    +    E         + +P    
Sbjct: 54  -------LTVADATSENAGSYKVTVQDTDTMTSVESEVFLMEEAE---LIVNITEPQHFY 103

Query: 124 EDDGKRLLFECRIQA--------DPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLE 175
                 +     ++         +      WS     +                    + 
Sbjct: 104 VSSQTDVELHATVKFSGGKTPADNYELHYSWSKGEDVIDTT---------------QDIT 148

Query: 176 IIDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDL 235
           I + T +  G Y V    E  +S A+ S         V     + V   + V   ++  L
Sbjct: 149 IQEFTADKNGVYTVKVWGESEDSAASASTKIMLATMNV----DQDVVESKTVALGNEISL 204

Query: 236 NDIV---IECRLVGEPEPTISW 254
           N +V   I     G P  TI +
Sbjct: 205 NYVVSEDIVGDSSGMPNLTIKY 226

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49} Length = 304

 Score = 57.1 bits (137), Expect = 8e-10
 Identities = 35/226 (15%), Positives = 62/226 (27%), Gaps = 58/226 (25%)

Query: 9   PSFTQKPQLRQEDEGNRLIFECQLLC---NPKPDIV-----WFRGETQLSEDTRTVMKTT 60
                +PQ         +     +         D       W +GE  +           
Sbjct: 93  IVNITEPQHFYVSSQTDVELHATVKFSGGKTPADNYELHYSWSKGEDVIDTTQD------ 146

Query: 61  PIGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPS 120
                     + + +      G+Y VK   +  + AAS +          LA   + +  
Sbjct: 147 ----------ITIQEFTADKNGVYTVKVWGESEDSAASAST------KIMLATMNVDQDV 190

Query: 121 IRQE--DDGKRLLFECRIQAD--------PAPTVIWS------------HSGVQVKEDKR 158
           +  +    G  +     +  D        P  T+ ++              G +V E   
Sbjct: 191 VESKTVALGNEISLNYVVSEDIVGDSSGMPNLTIKYNWYLQREGQLSPTLIGSEVGE-AL 249

Query: 159 HKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISL 204
             FSI  DGH     L     T +D  K+   AK      + T+ +
Sbjct: 250 EGFSITPDGH-----LFKESATYDDTAKFWCVAKLYQQIEDETVEV 290

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49} Length = 304

 Score = 47.5 bits (112), Expect = 1e-06
 Identities = 26/150 (17%), Positives = 44/150 (29%), Gaps = 27/150 (18%)

Query: 111 LAPTFLKKPSIRQEDDGKRLLFECRIQAD-PAP---TVIWSHSGVQVKEDKRHKFSIDKD 166
           +A T   + + R    G        +  D P P   T  W+      + +          
Sbjct: 1   MAFTVSIQSNKRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHENNT--------- 51

Query: 167 GHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERP 226
                A+L + D T E+AG YKVT ++    ++    +        +  E    V    P
Sbjct: 52  -----ATLTVADATSENAGSYKVTVQDTDTMTSVESEV-------FLMEEAELIVNITEP 99

Query: 227 --VTKQSDDDLNDIVIECRLVGEPEPTISW 254
                 S  D+          G+       
Sbjct: 100 QHFYVSSQTDVELHATVKFSGGKTPADNYE 129

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E* Length = 204

 Score = 75.7 bits (185), Expect = 8e-17
 Identities = 27/202 (13%), Positives = 52/202 (25%), Gaps = 44/202 (21%)

Query: 22  EGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDA 81
           E   ++  C        +I WF+    +   T    K              L    +   
Sbjct: 17  EDGSVLLTCDA---EAKNITWFKDGKMIGFLTEDKKK------------WNLGSNAKDPR 61

Query: 82  GLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDD--------------- 126
           G+Y+ K      +         S +     A           + D               
Sbjct: 62  GMYQCKGSQNKSKPLQVYYRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQTP 121

Query: 127 ------GKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVT 180
                 G  ++  C     P   ++W H+   +  D+  K     + H     L + + +
Sbjct: 122 YKVSISGTTVILTCP--QYPGSEILWQHNDKNIGGDEDDKNIGSDEDH-----LSLKEFS 174

Query: 181 -IEDAGKYKVTAKNELGESNAT 201
            +E +G Y    +    E    
Sbjct: 175 ELEQSGYYVCYPRGSKPEDANF 196

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A Length = 182

 Score = 74.9 bits (184), Expect = 8e-17
 Identities = 27/175 (15%), Positives = 55/175 (31%), Gaps = 28/175 (16%)

Query: 35  NPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLV----ALELDDVIETDAGLYKVKAKN 90
           +   DI W +   +         K T    + Y +     L++  +   D  +YKV   +
Sbjct: 28  DDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIKHLKTDDQDIYKVSIYD 87

Query: 91  KMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSG 150
             G+       +    +I       + KP I            C +     P +     G
Sbjct: 88  TKGKNVLEKIFDL---KI--QER--VSKPKISWT--CINTTLTCEVMNGTDPELNLYQDG 138

Query: 151 VQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLN 205
             +K  +R               +     T   + K+K TA N++ + ++   ++
Sbjct: 139 KHLKLSQR---------------VITHKWTTSLSAKFKCTAGNKVSKESSVEPVS 178

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A Length = 182

 Score = 62.2 bits (151), Expect = 4e-12
 Identities = 15/135 (11%), Positives = 46/135 (34%), Gaps = 21/135 (15%)

Query: 127 GKRLLFECRIQA--DPAPTVIWSHSG--VQVKEDKRHKFSIDKDGHSYF---ASLEIIDV 179
           G+ +  +       D    + W  +    ++ + ++ K +  +          +L+I  +
Sbjct: 14  GQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIKHL 73

Query: 180 TIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIV 239
             +D   YKV+  +  G++      +    +       +KP  +             +  
Sbjct: 74  KTDDQDIYKVSIYDTKGKNVLEKIFDLKIQERV-----SKPKISWTC---------INTT 119

Query: 240 IECRLVGEPEPTISW 254
           + C ++   +P ++ 
Sbjct: 120 LTCEVMNGTDPELNL 134

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A Length = 182

 Score = 39.9 bits (93), Expect = 3e-04
 Identities = 10/89 (11%), Positives = 29/89 (32%), Gaps = 18/89 (20%)

Query: 14  KPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALEL 73
           KP++            C+++    P++  ++    L    R +                 
Sbjct: 108 KPKISWT--CINTTLTCEVMNGTDPELNLYQDGKHLKLSQRVITHKWT------------ 153

Query: 74  DDVIETDAGLYKVKAKNKMGEVAASINLN 102
                + +  +K  A NK+ + ++   ++
Sbjct: 154 ----TSLSAKFKCTAGNKVSKESSVEPVS 178

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* Length = 208

 Score = 75.5 bits (185), Expect = 1e-16
 Identities = 27/200 (13%), Positives = 67/200 (33%), Gaps = 31/200 (15%)

Query: 22  EGNRLIFECQLLCNPKPDIVWFRGETQLSED-------TRTVMKTTPIGTNKYLV----A 70
           E N ++     L        W++G T   +           +  T    + + ++    +
Sbjct: 13  EDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGS 72

Query: 71  LELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQED----D 126
           L    +   D G+Y +   ++            ++  +       + +P ++  +    +
Sbjct: 73  LLFQMITMKDMGVYTLDMTDENYRR--------TQATVRFHVHQPVTQPFLQVTNTTVKE 124

Query: 127 GKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGK 186
              +   C +  D    + W  +   ++  +R   S +         L I  +  EDAG+
Sbjct: 125 LDSVTLTC-LSNDIGANIQWLFNSQSLQLTERMTLSQNNS------ILRIDPIKREDAGE 177

Query: 187 YKVTAKNELGESNA-TISLN 205
           Y+    N +    + +I L+
Sbjct: 178 YQCEISNPVSVRRSNSIKLD 197

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* Length = 208

 Score = 47.7 bits (113), Expect = 7e-07
 Identities = 18/140 (12%), Positives = 32/140 (22%), Gaps = 22/140 (15%)

Query: 127 GKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKD----GHSYF--------ASL 174
              +L              W        + +  +F  + +    G +Y          SL
Sbjct: 14  DNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGSL 73

Query: 175 EIIDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDD 234
               +T++D G Y +   +E                   P         +          
Sbjct: 74  LFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNTTVKE--------- 124

Query: 235 LNDIVIECRLVGEPEPTISW 254
             D V    L  +    I W
Sbjct: 125 -LDSVTLTCLSNDIGANIQW 143

>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 71.2 bits (175), Expect = 3e-16
 Identities = 16/83 (19%), Positives = 32/83 (38%), Gaps = 5/83 (6%)

Query: 112 APTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYF 171
           A  F ++ +  Q ++    +F C+    PA TV W    ++++   +H+ S +       
Sbjct: 8   ANCFTEELTNLQVEEKGTAVFTCKT-EHPAATVTWRKGLLELRASGKHQPSQEGLTL--- 63

Query: 172 ASLEIIDVTIEDAGKYKVTAKNE 194
             L I  +   D+  Y       
Sbjct: 64  -RLTISALEKADSDTYTCDIGQA 85

>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 59.3 bits (144), Expect = 7e-12
 Identities = 14/83 (16%), Positives = 29/83 (34%), Gaps = 6/83 (7%)

Query: 8  APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKY 67
          A  FT++    Q +E    +F C+   +P   + W +G  +L    +             
Sbjct: 8  ANCFTEELTNLQVEEKGTAVFTCKT-EHPAATVTWRKGLLELRASGKHQPS-----QEGL 61

Query: 68 LVALELDDVIETDAGLYKVKAKN 90
           + L +  + + D+  Y      
Sbjct: 62 TLRLTISALEKADSDTYTCDIGQ 84

>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B Length = 202

 Score = 73.5 bits (180), Expect = 4e-16
 Identities = 21/189 (11%), Positives = 49/189 (25%), Gaps = 21/189 (11%)

Query: 22  EGNRLIFECQLLCNPKPDIVWFRGETQLSED------TRTVMKTTPIGTNKYLVALELDD 75
            G+ +  EC        ++   R   Q  E+       R  +    +   K      +  
Sbjct: 16  VGSSVSLECDFDRRECTELEGIRASLQKVENDTSLQSERATLLEEQLPLGK--ALFHIPS 73

Query: 76  VIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECR 135
           V   D+G Y+             + +      +            I +      +   C+
Sbjct: 74  VQVRDSGQYRCLVICGAAWDYKYLTVKVKASYMR-------IDTRILEVPGTGEVQLTCQ 126

Query: 136 IQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNEL 195
            +  P   V W +  V              +G     S  ++ +  + +  +     N  
Sbjct: 127 ARGYPLAEVSWQNVSVPANTS----HIRTPEGLYQVTS--VLRLKPQPSRNFSCMFWNAH 180

Query: 196 GESNATISL 204
            +   +  +
Sbjct: 181 MKELTSAII 189

>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B Length = 202

 Score = 65.4 bits (159), Expect = 4e-13
 Identities = 19/133 (14%), Positives = 42/133 (31%), Gaps = 17/133 (12%)

Query: 127 GKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKF----SIDKDGHSYF-ASLEIIDVTI 181
           G  +  EC         +    + +Q  E+         ++ ++      A   I  V +
Sbjct: 17  GSSVSLECDFDRRECTELEGIRASLQKVENDTSLQSERATLLEEQLPLGKALFHIPSVQV 76

Query: 182 EDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIE 241
            D+G+Y+             +++   +    +          E P T        ++ + 
Sbjct: 77  RDSGQYRCLVICGAAWDYKYLTVKVKASYMRID-----TRILEVPGT-------GEVQLT 124

Query: 242 CRLVGEPEPTISW 254
           C+  G P   +SW
Sbjct: 125 CQARGYPLAEVSW 137

>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A Length = 108

 Score = 70.5 bits (173), Expect = 7e-16
 Identities = 16/91 (17%), Positives = 33/91 (36%), Gaps = 6/91 (6%)

Query: 112 APTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYF 171
              F +    ++  +G     +C +       V W      +++  R+    D       
Sbjct: 8   PARFTQDLKTKEASEGATATLQCEL--SKVAPVEWKKGPETLRDGGRYSLKQDGTRC--- 62

Query: 172 ASLEIIDVTIEDAGKYKVTAKNELGESNATI 202
             L+I D+++ DAG+Y      E   +  T+
Sbjct: 63  -ELQIHDLSVADAGEYSCMCGQERTSATLTV 92

>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A Length = 108

 Score = 60.1 bits (146), Expect = 4e-12
 Identities = 23/112 (20%), Positives = 40/112 (35%), Gaps = 16/112 (14%)

Query: 8   APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKY 67
              FTQ  + ++  EG     +C+L  +    + W +G   L +  R  +K      +  
Sbjct: 8   PARFTQDLKTKEASEGATATLQCEL--SKVAPVEWKKGPETLRDGGRYSLK-----QDGT 60

Query: 68  LVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKP 119
              L++ D+   DAG Y        G+   S  L      +  L   F +  
Sbjct: 61  RCELQIHDLSVADAGEYSCMC----GQERTSATLT-----VRALPARFTEGS 103

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 70.5 bits (173), Expect = 7e-16
 Identities = 13/91 (14%), Positives = 33/91 (36%), Gaps = 5/91 (5%)

Query: 113 PTFLKKPSIRQEDDGKRLLFECRI-QADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYF 171
               K+    +  +G+   FEC +     +   +W+  G  V    R + +     +   
Sbjct: 9   VGITKRLKTMEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQATRQGRKY--- 65

Query: 172 ASLEIIDVTIEDAGKYKVTAKNELGESNATI 202
             L + +    DAG+   + +    +++  +
Sbjct: 66  -ILVVREAAPSDAGEVVFSVRGLTSKASLIV 95

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 56.2 bits (136), Expect = 1e-10
 Identities = 14/87 (16%), Positives = 27/87 (31%), Gaps = 6/87 (6%)

Query: 9  PSFTQKPQLRQEDEGNRLIFECQLLC-NPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKY 67
             T++ +  +  EG    FEC L   +     +W  G   +   +R             
Sbjct: 9  VGITKRLKTMEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQATR-----QGR 63

Query: 68 LVALELDDVIETDAGLYKVKAKNKMGE 94
             L + +   +DAG      +    +
Sbjct: 64 KYILVVREAAPSDAGEVVFSVRGLTSK 90

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens} Length = 113

 Score = 70.5 bits (173), Expect = 8e-16
 Identities = 18/96 (18%), Positives = 34/96 (35%), Gaps = 8/96 (8%)

Query: 108 IDGLAPTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDG 167
           +  L   F +     +  +G   +  C +       V W      +++  RH    D   
Sbjct: 15  VRALPIKFTEGLRNEEATEGATAVLRCEL--SKMAPVEWWKGHETLRDGDRHSLRQDGAR 72

Query: 168 HSYFASLEIIDVTIEDAGKYKVTAKNELGESNATIS 203
                 L+I  +  EDAG+Y      E   ++A ++
Sbjct: 73  C----ELQIRGLVAEDAGEYLCMCGKE--RTSAMLT 102

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens} Length = 113

 Score = 55.1 bits (133), Expect = 3e-10
 Identities = 15/86 (17%), Positives = 32/86 (37%), Gaps = 7/86 (8%)

Query: 5  EDFAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGT 64
                FT+  +  +  EG   +  C+L  +    + W++G   L +  R  ++      
Sbjct: 16 RALPIKFTEGLRNEEATEGATAVLRCEL--SKMAPVEWWKGHETLRDGDRHSLR-----Q 68

Query: 65 NKYLVALELDDVIETDAGLYKVKAKN 90
          +     L++  ++  DAG Y      
Sbjct: 69 DGARCELQIRGLVAEDAGEYLCMCGK 94

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R* Length = 213

 Score = 72.9 bits (178), Expect = 8e-16
 Identities = 27/209 (12%), Positives = 65/209 (31%), Gaps = 20/209 (9%)

Query: 7   FAPSFTQKPQLRQ--EDEGNRLIFECQLLCNPKPDIVWFR--GETQLSEDTRTVMKTTPI 62
           F  S + +  +    E++   ++  C        ++       E +   D   +   +  
Sbjct: 6   FIASVSDQHGVVYITENKNKTVVIPCLGS-ISNLNVSLCARYPEKRFVPDGNRISWDSKK 64

Query: 63  GTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIR 122
           G         +   + + AG+   +AK       + + +         +    L      
Sbjct: 65  G-------FTIPSYMISYAGMVFCEAKINDESYQSIMYI--VVVVGYRIYDVVLSPSHGI 115

Query: 123 QEDDGKRLLFECRIQADPAPTV--IWSHSGVQVKEDK----RHKFSIDKDGHSYFASLEI 176
           +   G++L+  C  + +    +   W +   + +  K      K     +   + ++L I
Sbjct: 116 ELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTI 175

Query: 177 IDVTIEDAGKYKVTAKNELGESNATISLN 205
             VT  D G Y   A + L     +  + 
Sbjct: 176 DGVTRSDQGLYTCAASSGLMTKKNSTFVR 204

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R* Length = 213

 Score = 40.9 bits (95), Expect = 1e-04
 Identities = 20/148 (13%), Positives = 35/148 (23%), Gaps = 22/148 (14%)

Query: 115 FLKKPSIRQED------DGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGH 168
           F+   S +           K ++  C   +     V               +F  D +  
Sbjct: 6   FIASVSDQHGVVYITENKNKTVVIPCLG-SISNLNVSLC------ARYPEKRFVPDGNRI 58

Query: 169 SYF--ASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERP 226
           S+       I    I  AG     AK       + + +             +     E  
Sbjct: 59  SWDSKKGFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELS 118

Query: 227 VTKQSDDDLNDIVIECRLVGEPEPTISW 254
           V          +V+ C    E    I +
Sbjct: 119 VG-------EKLVLNCTARTELNVGIDF 139

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score = 75.3 bits (185), Expect = 9e-16
 Identities = 26/100 (26%), Positives = 41/100 (41%), Gaps = 4/100 (4%)

Query: 106 EQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDK 165
                  P F+ KP   +  +G+   F CR+ A   P V W     ++K+  ++    + 
Sbjct: 476 WDRSEAQPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNG 535

Query: 166 DGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLN 205
           +       L I  V  +D G+Y V AKN  G     + LN
Sbjct: 536 N----DYGLTINRVKGDDKGEYTVRAKNSYGTKEEIVFLN 571

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score = 63.7 bits (155), Expect = 8e-12
 Identities = 25/98 (25%), Positives = 43/98 (43%), Gaps = 5/98 (5%)

Query: 5   EDFAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGT 64
            +  P F  KP   +  EG    F C+++ +  P + W + + +L +  + + +      
Sbjct: 479 SEAQPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNG--- 535

Query: 65  NKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLN 102
           N Y   L ++ V   D G Y V+AKN  G     + LN
Sbjct: 536 NDY--GLTINRVKGDDKGEYTVRAKNSYGTKEEIVFLN 571

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100

 Score = 70.1 bits (172), Expect = 9e-16
 Identities = 21/104 (20%), Positives = 34/104 (32%), Gaps = 10/104 (9%)

Query: 112 APTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYF 171
               L   + +  + GK +  +C I  +      W+ +G+ V+E  R K       H   
Sbjct: 7   GLKILTPLTDQTVNLGKEICLKCEISENI--PGKWTKNGLPVQESDRLKVVQKGRIHK-- 62

Query: 172 ASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPG 215
             L I +   ED G Y            A + +       P  G
Sbjct: 63  --LVIANALTEDEGDYVFAPDAYNVTLPAKVHV----ISGPSSG 100

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100

 Score = 52.7 bits (127), Expect = 2e-09
 Identities = 12/100 (12%), Positives = 30/100 (30%), Gaps = 7/100 (7%)

Query: 2   GIAEDFAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTP 61
           G +             +  + G  +  +C++  N      W +    + E  R  +    
Sbjct: 1   GSSGSSGLKILTPLTDQTVNLGKEICLKCEISENIPG--KWTKNGLPVQESDRLKVV--- 55

Query: 62  IGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINL 101
                 +  L + + +  D G Y          + A +++
Sbjct: 56  --QKGRIHKLVIANALTEDEGDYVFAPDAYNVTLPAKVHV 93

>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A Length = 103

 Score = 69.7 bits (171), Expect = 1e-15
 Identities = 13/92 (14%), Positives = 37/92 (40%), Gaps = 7/92 (7%)

Query: 112 APTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYF 171
              F +     +  +G      C + +  AP V W +    ++   ++    +       
Sbjct: 8   PVRFQEALKDLEVLEGGAATLRCVLSSVAAP-VKWCYGNNVLRPGDKYSLRQEGAMLE-- 64

Query: 172 ASLEIIDVTIEDAGKYKVTAKNELGESNATIS 203
             L + ++  +D+G+Y  +  ++   ++AT++
Sbjct: 65  --LVVRNLRPQDSGRYSCSFGDQ--TTSATLT 92

>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A Length = 103

 Score = 52.3 bits (126), Expect = 3e-09
 Identities = 16/95 (16%), Positives = 30/95 (31%), Gaps = 10/95 (10%)

Query: 8   APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKY 67
              F +  +  +  EG      C L     P + W  G   L    +  ++         
Sbjct: 8   PVRFQEALKDLEVLEGGAATLRCVLSSVAAP-VKWCYGNNVLRPGDKYSLR-----QEGA 61

Query: 68  LVALELDDVIETDAGLYKVKAKNKMGEVAASINLN 102
           ++ L + ++   D+G Y        G+   S  L 
Sbjct: 62  MLELVVRNLRPQDSGRYSCSF----GDQTTSATLT 92

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score = 74.5 bits (182), Expect = 2e-15
 Identities = 29/198 (14%), Positives = 56/198 (28%), Gaps = 34/198 (17%)

Query: 8   APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKY 67
            P+        +  EG  +  +C+   +P+  +                +   P+G    
Sbjct: 283 FPAPNVILTKPEVSEGTEVTVKCE--AHPRAKVTLNG------------VPAQPLGPR-- 326

Query: 68  LVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDG 127
              L L    E +   +   A  ++       N       + G        P      + 
Sbjct: 327 -AQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPEN 385

Query: 128 KRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKY 187
            +    C+   +P P +                    KDG       E + VT +  G Y
Sbjct: 386 SQQTPMCQAWGNPLPELKCL-----------------KDGTFPLPIGESVTVTRDLEGTY 428

Query: 188 KVTAKNELGESNATISLN 205
              A++  GE    +++N
Sbjct: 429 LCRARSTQGEVTREVTVN 446

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score = 59.9 bits (144), Expect = 1e-10
 Identities = 29/254 (11%), Positives = 61/254 (24%), Gaps = 40/254 (15%)

Query: 6   DFAPSFTQKPQLRQEDEGNRLIFECQLLCN---PKPDIVWFRGETQLSEDTRTVMKTTPI 62
               +  Q    R  +   +    C L       +  +    G+ +L+        +   
Sbjct: 186 VLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFS- 244

Query: 63  GTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIR 122
                  A     V   D G  ++     +G  +       +        P      +  
Sbjct: 245 -------AKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYS----FPAPNVILTKP 293

Query: 123 QEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIE 182
           +  +G  +  +C  +A P   V  +    Q    +                L +     +
Sbjct: 294 EVSEGTEVTVKC--EAHPRAKVTLNGVPAQPLGPRAQ--------------LLLKATPED 337

Query: 183 DAGKYKVTAKNELGESN--ATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVI 240
           +   +  +A  E+         +        P   E   P       T   +        
Sbjct: 338 NGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCP----GNWTWPENSQQ---TP 390

Query: 241 ECRLVGEPEPTISW 254
            C+  G P P +  
Sbjct: 391 MCQAWGNPLPELKC 404

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score = 59.5 bits (143), Expect = 2e-10
 Identities = 31/240 (12%), Positives = 63/240 (26%), Gaps = 34/240 (14%)

Query: 22  EGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDA 81
            G  ++  C   C+    +     ET L        K   +         EL +V   + 
Sbjct: 13  RGGSVLVTCSTSCDQPMLLGI---ETPLP-------KKELLLPGNNRKVYELSNV--QED 60

Query: 82  GLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLK-KPSIRQEDDGKRLLFECRIQA-- 138
                 +    G+  A   L           P  ++  P    +  GK L   C+++   
Sbjct: 61  SQPMCYSNCPDGQSTAKTFLTVYW------TPERVELAPLPSWQPVGKNLTLRCQVEGGA 114

Query: 139 -DPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGE 197
                TV+      ++K            G     +  ++         +    + +L  
Sbjct: 115 PRANLTVVLLRGEKELK-------REPAVGEPAEVTTTVLVRRDHHGANFSCRTELDLRP 167

Query: 198 SNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLVGE---PEPTISW 254
               +  N  +           P    + V+ +  +      + C L G     E  +  
Sbjct: 168 QGLELFEN--TSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHL 225

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A Length = 100

 Score = 68.6 bits (168), Expect = 3e-15
 Identities = 22/84 (26%), Positives = 34/84 (40%), Gaps = 6/84 (7%)

Query: 112 APTFLKK-PSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSY 170
              F K      Q D G R+ F   + ADP   V W  +G +++   ++ F         
Sbjct: 7   GAAFAKILDPAYQVDKGGRVRFVVEL-ADPKLEVKWYKNGQEIRPSTKYIFEHKGCQR-- 63

Query: 171 FASLEIIDVTIEDAGKYKVTAKNE 194
              L I +  + D  +Y VTA +E
Sbjct: 64  --ILFINNCQMTDDSEYYVTAGDE 85

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A Length = 100

 Score = 58.9 bits (143), Expect = 1e-11
 Identities = 20/102 (19%), Positives = 41/102 (40%), Gaps = 11/102 (10%)

Query: 2   GIAEDFAPSFTQKPQLRQE-DEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTT 60
           G +     +F +      + D+G R+ F  +L  +PK ++ W++   ++   T+ + +  
Sbjct: 1   GSSGSSGAAFAKILDPAYQVDKGGRVRFVVEL-ADPKLEVKWYKNGQEIRPSTKYIFE-- 57

Query: 61  PIGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLN 102
                     L +++   TD   Y V A    G+   S  L 
Sbjct: 58  ---HKGCQRILFINNCQMTDDSEYYVTA----GDEKCSTELF 92

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331

 Score = 73.2 bits (179), Expect = 3e-15
 Identities = 27/192 (14%), Positives = 48/192 (25%), Gaps = 21/192 (10%)

Query: 17  LRQEDEGNRLIFECQLLC-NPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDD 75
            ++  +   L+  C      P   + W       +E         P GT   +    L  
Sbjct: 144 AKKGQDDKVLVATCTSANGKPPSVVSWETRLKGEAEYQEI---RNPNGTVTVISRYRLVP 200

Query: 76  VIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTF-LKKPSIRQEDDGKRLLFEC 134
             E             M     S+ LN          P   ++            +   C
Sbjct: 201 SREAHQQSLACIVNYHMDRFKESLTLNVQ------YEPEVTIEGFDGNWYLQRMDVKLTC 254

Query: 135 RIQADPAPTVI-WSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKN 193
           +  A+P  T   W+     + +                       +    AG Y   A N
Sbjct: 255 KADANPPATEYHWTTLNGSLPKGVEA---------QNRTLFFKGPINYSLAGTYICEATN 305

Query: 194 ELGESNATISLN 205
            +G  +  + +N
Sbjct: 306 PIGTRSGQVEVN 317

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331

 Score = 43.6 bits (102), Expect = 3e-05
 Identities = 22/149 (14%), Positives = 43/149 (28%), Gaps = 28/149 (18%)

Query: 127 GKRLLFECRIQADPAP----TVIW---------------SHSGVQVKEDKRHKFSIDKDG 167
           G  ++  C             V W                  GV V    R +    +  
Sbjct: 29  GTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGVSVLAPYRERVEFLRPS 88

Query: 168 HSYFASLEIIDVTIEDAGKYKVTAKNELGESN-ATISLNFDSDDAPVPGEGTKPVFTERP 226
            +   ++ +  + +ED G Y          +  + ++L         P    +   T+  
Sbjct: 89  FT-DGTIRLSRLELEDEGVYICEFATFPTGNRESQLNLT----VMAKPTNWIEG--TQAV 141

Query: 227 VTKQSDDDLNDIVIECRLV-GEPEPTISW 254
           +  +   D   +V  C    G+P   +SW
Sbjct: 142 LRAKKGQDDKVLVATCTSANGKPPSVVSW 170

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3 Length = 176

 Score = 69.6 bits (170), Expect = 6e-15
 Identities = 24/175 (13%), Positives = 55/175 (31%), Gaps = 30/175 (17%)

Query: 35  NPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLV----ALELDDVIETDAGLYKVKAKN 90
           +   ++ W RG T ++E  R +       +  + +     L++ ++   D+G Y V   +
Sbjct: 25  DDIDEVRWERGSTLVAEFKRKMKPFLK--SGAFEILANGDLKIKNLTRDDSGTYNVTVYS 82

Query: 91  KMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSG 150
             G    +  L+    ++       + KP I  E     L   C +       +      
Sbjct: 83  TNGTRILNKALDLRILEM-------VSKPMIYWECSNATL--TCEVLEGTDVELKLYQGK 133

Query: 151 VQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLN 205
             ++  ++   S                        +K  A N + + +    +N
Sbjct: 134 EHLRSLRQKTMSYQWT---------------NLRAPFKCKAVNRVSQESEMEVVN 173

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3 Length = 176

 Score = 63.8 bits (155), Expect = 1e-12
 Identities = 24/133 (18%), Positives = 41/133 (30%), Gaps = 19/133 (14%)

Query: 127 GKRLLFECRIQ--ADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYF---ASLEIIDVTI 181
           G  +          D    V W      V E KR      K G         L+I ++T 
Sbjct: 11  GHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTR 70

Query: 182 EDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIE 241
           +D+G Y VT  +  G      +L+       V     KP+              ++  + 
Sbjct: 71  DDSGTYNVTVYSTNGTRILNKALDL-RILEMVS----KPMIYWEC---------SNATLT 116

Query: 242 CRLVGEPEPTISW 254
           C ++   +  +  
Sbjct: 117 CEVLEGTDVELKL 129

>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 104

 Score = 67.8 bits (166), Expect = 7e-15
 Identities = 17/84 (20%), Positives = 31/84 (36%), Gaps = 5/84 (5%)

Query: 112 APTFLKK-PSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSY 170
           +  F KK     Q   G ++     + AD    V W  +G +++     K+  +  G   
Sbjct: 15  STAFQKKLEPAYQVSKGHKIRLTVEL-ADHDAEVKWLKNGQEIQMSGS-KYIFESIGAKR 72

Query: 171 FASLEIIDVTIEDAGKYKVTAKNE 194
             +L I   ++ D   Y+     E
Sbjct: 73  --TLTISQCSLADDAAYQCVVGGE 94

>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 104

 Score = 54.3 bits (131), Expect = 5e-10
 Identities = 9/93 (9%), Positives = 31/93 (33%), Gaps = 6/93 (6%)

Query: 3  IAEDFAPSFTQKPQLRQE-DEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTP 61
          + E  + +F +K +   +  +G+++    +L  +   ++ W +   ++       +    
Sbjct: 10 MDEKKSTAFQKKLEPAYQVSKGHKIRLTVEL-ADHDAEVKWLKNGQEIQMSGSKYI---- 64

Query: 62 IGTNKYLVALELDDVIETDAGLYKVKAKNKMGE 94
            +      L +      D   Y+     +   
Sbjct: 65 FESIGAKRTLTISQCSLADDAAYQCVVGGEKCS 97

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 103

 Score = 67.7 bits (166), Expect = 7e-15
 Identities = 17/91 (18%), Positives = 35/91 (38%), Gaps = 3/91 (3%)

Query: 112 APTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYF 171
                K+        G+R+  EC + ++    V W  +G ++    + ++ I  +G  + 
Sbjct: 7   GIMVTKQLEDTTAYCGERVELECEV-SEDDANVKWFKNGEEIIPGPKSRYRIRVEGKKH- 64

Query: 172 ASLEIIDVTIEDAGKYKVTAKNELGESNATI 202
             L I   T  DA +Y V        +  ++
Sbjct: 65  -ILIIEGATKADAAEYSVMTTGGQSSAKLSV 94

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 103

 Score = 52.3 bits (126), Expect = 3e-09
 Identities = 14/89 (15%), Positives = 33/89 (37%), Gaps = 4/89 (4%)

Query: 2  GIAEDFAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTP 61
          G +       T++ +      G R+  EC++      ++ WF+   ++    ++  +   
Sbjct: 1  GSSGSSGIMVTKQLEDTTAYCGERVELECEV-SEDDANVKWFKNGEEIIPGPKSRYRIRV 59

Query: 62 IGTNKYLVALELDDVIETDAGLYKVKAKN 90
           G    L+   ++   + DA  Y V    
Sbjct: 60 EGKKHILI---IEGATKADAAEYSVMTTG 85

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A Length = 93

 Score = 67.3 bits (165), Expect = 7e-15
 Identities = 13/82 (15%), Positives = 24/82 (29%), Gaps = 5/82 (6%)

Query: 113 PTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFA 172
               K     +   G+   FE  + ++P     W   G  +      +   D   H    
Sbjct: 6   IEVEKPLYGVEVFVGETAHFEIEL-SEPDVHGQWKLKGQPLAASPDCEIIEDGKKH---- 60

Query: 173 SLEIIDVTIEDAGKYKVTAKNE 194
            L + +  +   G+    A N 
Sbjct: 61  ILILHNCQLGMTGEVSFQAANT 82

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A Length = 93

 Score = 55.0 bits (133), Expect = 2e-10
 Identities = 12/82 (14%), Positives = 20/82 (24%), Gaps = 6/82 (7%)

Query: 9  PSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYL 68
              +     +   G    FE +L   P     W      L+      +       +   
Sbjct: 6  IEVEKPLYGVEVFVGETAHFEIEL-SEPDVHGQWKLKGQPLAASPDCEIIE-----DGKK 59

Query: 69 VALELDDVIETDAGLYKVKAKN 90
            L L +      G    +A N
Sbjct: 60 HILILHNCQLGMTGEVSFQAAN 81

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens} Length = 95

 Score = 66.6 bits (163), Expect = 1e-14
 Identities = 21/93 (22%), Positives = 31/93 (33%), Gaps = 9/93 (9%)

Query: 113 PTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFA 172
             F KKP   +   G   +FE          V W   G  +    ++  + +   H    
Sbjct: 9   SAFSKKPRSVEVAAGSPAVFEAET-ERAGVKVRWQRGGSDISASNKYGLATEGTRH---- 63

Query: 173 SLEIIDVTIEDAGKYKVTAKNELGESNATISLN 205
           +L + +V   D G Y V A    G S     L 
Sbjct: 64  TLTVREVGPADQGSYAVIA----GSSKVKFDLK 92

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens} Length = 95

 Score = 53.9 bits (130), Expect = 7e-10
 Identities = 20/94 (21%), Positives = 36/94 (38%), Gaps = 10/94 (10%)

Query: 9   PSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYL 68
            +F++KP+  +   G+  +FE +        + W RG + +S   +  +      T    
Sbjct: 9   SAFSKKPRSVEVAAGSPAVFEAE-TERAGVKVRWQRGGSDISASNKYGLA-----TEGTR 62

Query: 69  VALELDDVIETDAGLYKVKAKNKMGEVAASINLN 102
             L + +V   D G Y V A    G      +L 
Sbjct: 63  HTLTVREVGPADQGSYAVIA----GSSKVKFDLK 92

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 101

 Score = 66.6 bits (163), Expect = 2e-14
 Identities = 20/92 (21%), Positives = 38/92 (41%), Gaps = 7/92 (7%)

Query: 113 PTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRH--KFSIDKDGHSY 170
              +     +Q   G R+     + ++    V+W  +GV++  +     ++   KDG  +
Sbjct: 9   VLIVTPLEDQQVFVGDRVEMAVEV-SEEGAQVMWMKNGVELTREDSFKARYRFKKDGKRH 67

Query: 171 FASLEIIDVTIEDAGKYKVTAKNELGESNATI 202
              L   DV  ED G+Y+V      G+  A +
Sbjct: 68  --ILIFSDVVQEDRGRYQVITNG--GQCEAEL 95

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 101

 Score = 54.6 bits (132), Expect = 4e-10
 Identities = 12/83 (14%), Positives = 29/83 (34%), Gaps = 2/83 (2%)

Query: 9  PSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYL 68
                 + +Q   G+R+    ++       ++W +   +L+ +     +      +   
Sbjct: 9  VLIVTPLEDQQVFVGDRVEMAVEV-SEEGAQVMWMKNGVELTREDSFKARYR-FKKDGKR 66

Query: 69 VALELDDVIETDAGLYKVKAKNK 91
            L   DV++ D G Y+V     
Sbjct: 67 HILIFSDVVQEDRGRYQVITNGG 89

>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 102

 Score = 65.9 bits (161), Expect = 3e-14
 Identities = 14/94 (14%), Positives = 27/94 (28%), Gaps = 8/94 (8%)

Query: 112 APTFLKKPSIRQE---DDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGH 168
              F K+    +E   + G      C + A     V W   G ++    + +        
Sbjct: 8   KVVFAKEQPAHREVQAEAGASATLSCEV-AQAQTEVTWYKDGKKLSSSSKVRVEAVGCTR 66

Query: 169 SYFASLEIIDVTIEDAGKYKVTAKNELGESNATI 202
                L +      +AG+Y   A  +       +
Sbjct: 67  ----RLVVQQAGQAEAGEYSCEAGGQQLSFRLQV 96

>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 102

 Score = 51.3 bits (123), Expect = 6e-09
 Identities = 14/94 (14%), Positives = 32/94 (34%), Gaps = 10/94 (10%)

Query: 9   PSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYL 68
                  +  Q + G      C++    + ++ W++   +LS  ++  ++          
Sbjct: 12  AKEQPAHREVQAEAGASATLSCEV-AQAQTEVTWYKDGKKLSSSSKVRVE-----AVGCT 65

Query: 69  VALELDDVIETDAGLYKVKAKNKMGEVAASINLN 102
             L +    + +AG Y  +A    G    S  L 
Sbjct: 66  RRLVVQQAGQAEAGEYSCEA----GGQQLSFRLQ 95

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 113

 Score = 65.9 bits (161), Expect = 3e-14
 Identities = 17/86 (19%), Positives = 33/86 (38%), Gaps = 8/86 (9%)

Query: 112 APTFLKKPSIRQE---DDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGH 168
             +++  PS +        +R++  C +   P   V W+  G +V E        +    
Sbjct: 10  VSSWIVYPSGKVYVAAVRLERVVLTCEL-CRPWAEVRWTKDGEEVVESPALLLQKEDTVR 68

Query: 169 SYFASLEIIDVTIEDAGKYKVTAKNE 194
                L +  V +ED+G+Y     +E
Sbjct: 69  ----RLVLPAVQLEDSGEYLCEIDDE 90

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 113

 Score = 52.5 bits (126), Expect = 3e-09
 Identities = 17/98 (17%), Positives = 36/98 (36%), Gaps = 13/98 (13%)

Query: 8   APSFTQKPQLRQE---DEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGT 64
             S+   P  +         R++  C+L C P  ++ W +   ++ E    +++      
Sbjct: 10  VSSWIVYPSGKVYVAAVRLERVVLTCEL-CRPWAEVRWTKDGEEVVESPALLLQ-----K 63

Query: 65  NKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLN 102
              +  L L  V   D+G Y  +      + +AS  + 
Sbjct: 64  EDTVRRLVLPAVQLEDSGEYLCEI----DDESASFTVT 97

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus} Length = 95

 Score = 65.2 bits (159), Expect = 4e-14
 Identities = 19/93 (20%), Positives = 33/93 (35%), Gaps = 9/93 (9%)

Query: 113 PTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFA 172
                +        G  L   CR++ D   ++ W   GVQ+ E  R + + +        
Sbjct: 10  WGVPVEVESLLVHPGDLLQLRCRLR-DDVQSINWLRDGVQLVESNRTRITGE-------- 60

Query: 173 SLEIIDVTIEDAGKYKVTAKNELGESNATISLN 205
            +E+ D    D+G Y     +  G      S+N
Sbjct: 61  EVEVRDSIPADSGLYACVTSSPSGSDTTYFSVN 93

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus} Length = 95

 Score = 59.0 bits (143), Expect = 8e-12
 Identities = 21/94 (22%), Positives = 33/94 (35%), Gaps = 10/94 (10%)

Query: 9   PSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYL 68
                + +      G+ L   C+L  +    I W R   QL E  RT +           
Sbjct: 10  WGVPVEVESLLVHPGDLLQLRCRLR-DDVQSINWLRDGVQLVESNRTRITGE-------- 60

Query: 69  VALELDDVIETDAGLYKVKAKNKMGEVAASINLN 102
             +E+ D I  D+GLY     +  G      ++N
Sbjct: 61  -EVEVRDSIPADSGLYACVTSSPSGSDTTYFSVN 93

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A Length = 170

 Score = 67.2 bits (164), Expect = 4e-14
 Identities = 28/200 (14%), Positives = 57/200 (28%), Gaps = 39/200 (19%)

Query: 9   PSFTQKPQLRQEDEGNRLIFECQLLCNPKPD-IVWFRGETQLSEDTRTVMKTTPIGTNKY 67
                +P      + + +   CQ   +P+ D I WF     +   T+             
Sbjct: 5   AVLKLEPPWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPTHTQP------------ 52

Query: 68  LVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDG 127
                       D+G Y  +       ++  ++L    E         L+ P + +  +G
Sbjct: 53  ---SYRFKANNNDSGEYTCQTGQ--TSLSDPVHLTVLFE------WLVLQTPHL-EFQEG 100

Query: 128 KRLLFECRIQAD-PAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGK 186
           + ++  C    D P   V +  +G   K                  +  I       +G 
Sbjct: 101 ETIMLRCHSWKDKPLVKVTFFQNGKSQKFSHLD------------PTFSIPQANHSHSGD 148

Query: 187 YKVTAKNELG-ESNATISLN 205
           Y  T        S+  +++ 
Sbjct: 149 YHCTGNIGYTLFSSKPVTIT 168

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A Length = 170

 Score = 43.7 bits (103), Expect = 1e-05
 Identities = 14/130 (10%), Positives = 35/130 (26%), Gaps = 30/130 (23%)

Query: 127 GKRLLFECRIQADPAP-TVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAG 185
              +   C+    P   ++ W H+G  +    +                        D+G
Sbjct: 19  EDSVTLTCQGARSPESDSIQWFHNGNLIPTHTQ--------------PSYRFKANNNDSG 64

Query: 186 KYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLV 245
           +Y              +++ F+     +  +     F E             I++ C   
Sbjct: 65  EYTCQTGQTSLSDPVHLTVLFE----WLVLQTPHLEFQEG----------ETIMLRCHSW 110

Query: 246 -GEPEPTISW 254
             +P   +++
Sbjct: 111 KDKPLVKVTF 120

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* Length = 265

 Score = 67.8 bits (165), Expect = 1e-13
 Identities = 28/201 (13%), Positives = 54/201 (26%), Gaps = 40/201 (19%)

Query: 8   APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKY 67
            P+        +  EG  +  +C+   +P+  +       Q                   
Sbjct: 98  FPAPNVILTKPEVSEGTEVTVKCE--AHPRAKVTLNGVPAQPLGPRAQ------------ 143

Query: 68  LVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAP---TFLKKPSIRQE 124
              L L    E +   +   A  ++       N      ++  L          P     
Sbjct: 144 ---LLLKATPEDNGRSFSCSATLEVAGQLIHKN---QTRELRVLYGPRLDERDCPGNWTW 197

Query: 125 DDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDA 184
            +  +    C+   +P P +                    KDG       E + VT +  
Sbjct: 198 PENSQQTPMCQAWGNPLPELKCL-----------------KDGTFPLPIGESVTVTRDLE 240

Query: 185 GKYKVTAKNELGESNATISLN 205
           G Y   A++  GE    +++N
Sbjct: 241 GTYLCRARSTQGEVTREVTVN 261

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* Length = 265

 Score = 48.5 bits (115), Expect = 5e-07
 Identities = 36/255 (14%), Positives = 64/255 (25%), Gaps = 49/255 (19%)

Query: 8   APSFTQKPQLRQEDEGNRLIFECQLL-CNPKPD--IVWFRGETQLSEDTRTVMKTTPIGT 64
            P       L       +    C L    P  +  +    G+ +L+        +    +
Sbjct: 6   PPQLVSPRVLE---VDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSF---S 59

Query: 65  NKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQE 124
            K  V++  +D                         +          AP  +       E
Sbjct: 60  AKASVSVTAED---EGTQRLTCAVILGNQSQETLQTVTIYSFP----APNVILTKPEVSE 112

Query: 125 DDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDA 184
             G  +  +C  +A P   V  +    Q    +               +  ++  T ED 
Sbjct: 113 --GTEVTVKC--EAHPRAKVTLNGVPAQPLGPR---------------AQLLLKATPEDN 153

Query: 185 GK-YKVTAKNELG----ESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIV 239
           G+ +  +A  E+       N T  L       P   E   P       T   +       
Sbjct: 154 GRSFSCSATLEVAGQLIHKNQTREL--RVLYGPRLDERDCP----GNWTWPENSQQ---T 204

Query: 240 IECRLVGEPEPTISW 254
             C+  G P P +  
Sbjct: 205 PMCQAWGNPLPELKC 219

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 64.3 bits (157), Expect = 1e-13
 Identities = 13/95 (13%), Positives = 36/95 (37%), Gaps = 10/95 (10%)

Query: 112 APTFLKKPSIRQE---DDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGH 168
            P  +  P  +        +R++  C + +       W   G +V+E +     +D   H
Sbjct: 7   GPVHILSPQDKVSLTFTTSERVVLTCEL-SRVDFPATWYKDGQKVEESELLVVKMDGRKH 65

Query: 169 SYFASLEIIDVTIEDAGKYKVTAKNELGESNATIS 203
                L + +  ++D+G+++   +     +   ++
Sbjct: 66  ----RLILPEAKVQDSGEFECRTEGV--SAFFGVT 94

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 51.2 bits (123), Expect = 7e-09
 Identities = 16/98 (16%), Positives = 33/98 (33%), Gaps = 13/98 (13%)

Query: 8   APSFTQKPQLRQE---DEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGT 64
            P     PQ +         R++  C+L         W++   ++ E    V+K      
Sbjct: 7   GPVHILSPQDKVSLTFTTSERVVLTCEL-SRVDFPATWYKDGQKVEESELLVVKM----- 60

Query: 65  NKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLN 102
           +     L L +    D+G ++ +       V+A   + 
Sbjct: 61  DGRKHRLILPEAKVQDSGEFECRT----EGVSAFFGVT 94

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A* Length = 268

 Score = 67.6 bits (164), Expect = 2e-13
 Identities = 39/261 (14%), Positives = 71/261 (27%), Gaps = 50/261 (19%)

Query: 9   PSFTQKPQLRQEDEGNRLIFECQLLC---NPKPDIVWFRGETQLSEDTRTVMK----TTP 61
           P  T      +   G  ++  C +          + W   + +       +      + P
Sbjct: 6   PGLTVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVP 65

Query: 62  IGTNKYLVA-----------LELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDG 110
            G  +               L L DV + D G+Y  + + K   +     +         
Sbjct: 66  TGRFQNRSHLVGDTFHNDGSLLLQDVQKADEGIYTCEIRLKNESMVMKKPVELW------ 119

Query: 111 LAPTFLKKPSIRQEDDGKRLLFECRIQADPAP---TVIWSHSGVQVKEDK---------- 157
                 ++P   +   G      C IQ+        V W  S     E++          
Sbjct: 120 ---VLPEEPRDLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMR 176

Query: 158 ----------RHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFD 207
                     R++  +  D      S+++  V   D G Y  +      ES  TI L+  
Sbjct: 177 SGKFQSLGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTIVLHVV 236

Query: 208 SDDAPVPGEGTKPVFTERPVT 228
            D+       T P    +   
Sbjct: 237 QDEFQRTISPTPPTDKGQQGI 257

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96

 Score = 63.6 bits (155), Expect = 2e-13
 Identities = 14/94 (14%), Positives = 30/94 (31%), Gaps = 13/94 (13%)

Query: 112 APTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYF 171
               + +P       G  +   C + A P+P + W   GV +                  
Sbjct: 10  EVQLVVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLPPSP------------ 57

Query: 172 ASLEIIDVTIEDAGKYKVTAKNELGESNATISLN 205
             L + ++  +D G Y   A +       + +++
Sbjct: 58  -VLILPEIGPQDQGTYSCVATHSSHGPQESRAVS 90

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96

 Score = 58.2 bits (141), Expect = 2e-11
 Identities = 16/95 (16%), Positives = 27/95 (28%), Gaps = 14/95 (14%)

Query: 8   APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKY 67
                 +P+      G  +   C++   P P I W +    L      V           
Sbjct: 10  EVQLVVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLPPSPV----------- 58

Query: 68  LVALELDDVIETDAGLYKVKAKNKMGEVAASINLN 102
              L L ++   D G Y   A +       S  ++
Sbjct: 59  ---LILPEIGPQDQGTYSCVATHSSHGPQESRAVS 90

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C* Length = 175

 Score = 65.7 bits (160), Expect = 2e-13
 Identities = 26/191 (13%), Positives = 54/191 (28%), Gaps = 38/191 (19%)

Query: 9   PSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIV-WFRGETQLSEDTRTVMKTTPIGTNKY 67
                +PQ     E + +  +CQ   +P+ +   WF  E+ +S    +            
Sbjct: 8   AVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQASS------------ 55

Query: 68  LVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDG 127
                +D     D+G Y+ +       ++  + L              L+ P      + 
Sbjct: 56  ---YFIDAATVNDSGEYRCQTNL--STLSDPVQLEVHI------GWLLLQAPR-WVFKEE 103

Query: 128 KRLLFECRIQAD-PAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGK 186
             +   C    +     V +  +G   K               + +   I   T++D+G 
Sbjct: 104 DPIHLRCHSWKNTALHKVTYLQNGKDRK------------YFHHNSDFHIPKATLKDSGS 151

Query: 187 YKVTAKNELGE 197
           Y          
Sbjct: 152 YFCRGLVGSKN 162

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C* Length = 175

 Score = 39.5 bits (92), Expect = 3e-04
 Identities = 14/130 (10%), Positives = 32/130 (24%), Gaps = 30/130 (23%)

Query: 127 GKRLLFECRIQADPAP-TVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAG 185
              +  +C+    P   +  W H+   +                   S  I   T+ D+G
Sbjct: 22  KDSVTLKCQGAYSPEDNSTQWFHNESLISSQAS--------------SYFIDAATVNDSG 67

Query: 186 KYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECR-L 244
           +Y+             + ++        P         E P+            + C   
Sbjct: 68  EYRCQTNLSTLSDPVQLEVHIGWLLLQAPRW---VFKEEDPIH-----------LRCHSW 113

Query: 245 VGEPEPTISW 254
                  +++
Sbjct: 114 KNTALHKVTY 123

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* Length = 176

 Score = 65.3 bits (159), Expect = 2e-13
 Identities = 29/200 (14%), Positives = 59/200 (29%), Gaps = 39/200 (19%)

Query: 9   PSFTQKPQLRQEDEGNRLIFECQLLCNPKPD-IVWFRGETQLSEDTRTVMKTTPIGTNKY 67
           P  +  P   +  +G  +   C      +     WF   +   E   +            
Sbjct: 5   PKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEETNSS------------ 52

Query: 68  LVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDG 127
              L + +    D+G YK + +         + +              L + S     +G
Sbjct: 53  ---LNIVNAKFEDSGEYKCQHQQVNESEPVYLEVFS---------DWLLLQASAEVVMEG 100

Query: 128 KRLLFECRIQAD-PAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGK 186
           + L   C    +     VI+   G  +K    +             ++ I + T+ED+G 
Sbjct: 101 QPLFLRCHGWRNWDVYKVIYYKDGEALKYWYEN------------HNISITNATVEDSGT 148

Query: 187 YKVTAKNELGESN-ATISLN 205
           Y  T K    +     +++ 
Sbjct: 149 YYCTGKVWQLDYESEPLNIT 168

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* Length = 176

 Score = 39.9 bits (93), Expect = 2e-04
 Identities = 21/144 (14%), Positives = 39/144 (27%), Gaps = 30/144 (20%)

Query: 113 PTFLKKPSIRQEDDGKRLLFECRIQADPAP-TVIWSHSGVQVKEDKRHKFSIDKDGHSYF 171
           P     P   +   G+ +   C         +  W H+G   +E                
Sbjct: 5   PKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEETNS------------- 51

Query: 172 ASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQS 231
            SL I++   ED+G+YK   +         + +  D        E    V   +P+    
Sbjct: 52  -SLNIVNAKFEDSGEYKCQHQQVNESEPVYLEVFSDWLLLQASAE---VVMEGQPLF--- 104

Query: 232 DDDLNDIVIECR-LVGEPEPTISW 254
                   + C          + +
Sbjct: 105 --------LRCHGWRNWDVYKVIY 120

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C* Length = 204

 Score = 63.7 bits (155), Expect = 1e-12
 Identities = 27/191 (14%), Positives = 56/191 (29%), Gaps = 38/191 (19%)

Query: 9   PSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIV-WFRGETQLSEDTRTVMKTTPIGTNKY 67
                +PQ  +  E + +  +CQ   +P+     WF  E+ +S    +            
Sbjct: 8   AVVFLEPQWYRVLEKDSVTLKCQGAYSPEDQSTQWFHNESLISSQASS------------ 55

Query: 68  LVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDG 127
                +D     D+G Y+ + +     ++  + L              L+ P      + 
Sbjct: 56  ---YFIDAATVDDSGEYRCQTQL--STLSDPVQLEVHI------GWLLLQAPR-WVFKEE 103

Query: 128 KRLLFECRIQADPAP-TVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGK 186
             +   C    + A   V +  +G   K               + +   I   T++D+G 
Sbjct: 104 DPIHLRCHSWKNTALHKVTYLQNGKGRK------------YFHHNSDFYIPKATLKDSGS 151

Query: 187 YKVTAKNELGE 197
           Y          
Sbjct: 152 YFCRGLVGSKN 162

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 65.2 bits (159), Expect = 2e-12
 Identities = 20/88 (22%), Positives = 28/88 (31%), Gaps = 5/88 (5%)

Query: 118 KPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEII 177
           K S  +   G  L   C  +      V  S S  QV     +     ++G      L   
Sbjct: 252 KESAWEAHLGDTLTIRCDTKQQGMTKVWVSPSNEQVLSQGSNGSVSVRNG-----DLFFK 306

Query: 178 DVTIEDAGKYKVTAKNELGESNATISLN 205
            V +ED G Y   A  E      ++ L 
Sbjct: 307 KVQVEDGGVYTCYAMGETFNETLSVELK 334

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 51.8 bits (124), Expect = 5e-08
 Identities = 16/102 (15%), Positives = 25/102 (24%), Gaps = 6/102 (5%)

Query: 14  KPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALEL 73
           K    +   G+ L   C         +       Q+         +   G       L  
Sbjct: 252 KESAWEAHLGDTLTIRCDTKQQGMTKVWVSPSNEQVLSQGSNGSVSVRNGD------LFF 305

Query: 74  DDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTF 115
             V   D G+Y   A  +      S+ L      + G   T 
Sbjct: 306 KKVQVEDGGVYTCYAMGETFNETLSVELKVYNFTLHGHHDTL 347

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens} Length = 91

 Score = 60.4 bits (147), Expect = 3e-12
 Identities = 15/90 (16%), Positives = 30/90 (33%), Gaps = 14/90 (15%)

Query: 9  PSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYL 68
               +P  ++   G+ L+ +C  + +P P   WF+ E  L+ +T+ +            
Sbjct: 4  LQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETKKL------------ 51

Query: 69 VALELDDVIETDAGLYKVKAKNKMGEVAAS 98
              +  V     G Y     N      + 
Sbjct: 52 --YMVPYVDLEHQGTYWCHVYNDRDSQDSK 79

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens} Length = 91

 Score = 58.1 bits (141), Expect = 2e-11
 Identities = 13/92 (14%), Positives = 29/92 (31%), Gaps = 13/92 (14%)

Query: 110 GLAPTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHS 169
           G       +P+ ++   G  L+ +C     P P   W  + + +  + +           
Sbjct: 1   GSKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETKK---------- 50

Query: 170 YFASLEIIDVTIEDAGKYKVTAKNELGESNAT 201
                 +  V +E  G Y     N+    ++ 
Sbjct: 51  ---LYMVPYVDLEHQGTYWCHVYNDRDSQDSK 79

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4 Length = 98

 Score = 59.8 bits (145), Expect = 5e-12
 Identities = 20/95 (21%), Positives = 37/95 (38%), Gaps = 10/95 (10%)

Query: 112 APTFLKKPSIRQEDDGKRLLFECRIQA-DPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSY 170
               +++   +    G  + F C  ++  PA T++W+         +    ++D +G   
Sbjct: 10  IMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSR----AMDFNG--- 62

Query: 171 FASLEIIDVTIEDAGKYKVTAKNELGESNATISLN 205
              L I +V   DAG Y  T  N       T +L+
Sbjct: 63  --ILTIRNVQPSDAGTYVCTGSNMFAMDQGTATLH 95

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4 Length = 98

 Score = 50.6 bits (121), Expect = 1e-08
 Identities = 18/96 (18%), Positives = 27/96 (28%), Gaps = 12/96 (12%)

Query: 9   PSFTQKPQLRQE-DEGNRLIFECQLLC-NPKPDIVWFRGETQLSEDTRTVMKTTPIGTNK 66
              T + Q  Q    G  + F C     +P   +VW R                      
Sbjct: 10  IMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAMDFNGI------ 63

Query: 67  YLVALELDDVIETDAGLYKVKAKNKMGEVAASINLN 102
               L + +V  +DAG Y     N       +  L+
Sbjct: 64  ----LTIRNVQPSDAGTYVCTGSNMFAMDQGTATLH 95

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A Length = 202

 Score = 62.1 bits (150), Expect = 6e-12
 Identities = 22/183 (12%), Positives = 50/183 (27%), Gaps = 19/183 (10%)

Query: 22  EGNRLIFECQLLCNPKPDIVWFRG-ETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETD 80
            G+ +   C       P   W    ++ L+        T+          L ++ V   +
Sbjct: 15  IGDSVSLTCSTTGCESPFFSWRTQIDSPLNGKVTNEGTTS---------TLTMNPVSFGN 65

Query: 81  AGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQAD- 139
              Y   A  +  ++   I +       D   P       +     GK +  +C +    
Sbjct: 66  EHSYLCTATCESRKLEKGIQVEIYSFPKD---PEIHLSGPLEA---GKPITVKCSVADVY 119

Query: 140 --PAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGE 197
                 +        +K  +  + +  K   +    +    V  +        AK  + E
Sbjct: 120 PFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDE 179

Query: 198 SNA 200
            ++
Sbjct: 180 MDS 182

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A Length = 202

 Score = 52.9 bits (126), Expect = 1e-08
 Identities = 18/131 (13%), Positives = 37/131 (28%), Gaps = 21/131 (16%)

Query: 127 GKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGK 186
           G  +   C      +P   W        +   +    ++   S   +L +  V+  +   
Sbjct: 16  GDSVSLTCSTTGCESPFFSWRTQI----DSPLNGKVTNEGTTS---TLTMNPVSFGNEHS 68

Query: 187 YKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLVG 246
           Y  TA  E  +    I +   S         + P+   +P+T           ++C +  
Sbjct: 69  YLCTATCESRKLEKGIQVEIYSFPKDPEIHLSGPLEAGKPIT-----------VKCSVAD 117

Query: 247 ---EPEPTISW 254
                   I  
Sbjct: 118 VYPFDRLEIDL 128

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} Length = 117

 Score = 60.2 bits (146), Expect = 6e-12
 Identities = 25/100 (25%), Positives = 43/100 (43%), Gaps = 6/100 (6%)

Query: 112 APTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDK---RHKFSIDKDGH 168
            P  ++ PS      G+     C+ +  P PT+ W   G +V+ DK   R    +   G 
Sbjct: 9   PPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGS 68

Query: 169 SYFASLEIIDVTIEDAGKYKVTAKNELGES---NATISLN 205
            +F  +     +  D G Y   A+N LGE+   +A++ + 
Sbjct: 69  LFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVA 108

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} Length = 117

 Score = 59.4 bits (144), Expect = 9e-12
 Identities = 24/102 (23%), Positives = 39/102 (38%), Gaps = 3/102 (2%)

Query: 5   EDFAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGT 64
           EDF P   + P      +G      C+    P P I W++G  ++  D         +  
Sbjct: 6   EDFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLP 65

Query: 65  NKYLVALELDD--VIETDAGLYKVKAKNKMGE-VAASINLNF 103
           +  L  L +        D G+Y   A+N +GE V+   +L  
Sbjct: 66  SGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEV 107

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 62.8 bits (153), Expect = 1e-11
 Identities = 25/105 (23%), Positives = 37/105 (35%), Gaps = 9/105 (8%)

Query: 112 APTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQV--KEDKRHKFSIDKDGHS 169
           AP  +  P      +G+    +CR    P  +V W      V     +  + S+  DG  
Sbjct: 352 APFIMDAPRDLNISEGRMAELKCR--TPPMSSVKWLLPNGTVLSHASRHPRISVLNDG-- 407

Query: 170 YFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVP 214
              +L    V + D G Y     N  G SNA+  LN  +      
Sbjct: 408 ---TLNFSHVLLSDTGVYTCMVTNVAGNSNASAYLNVSTAGTHHH 449

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 51.3 bits (123), Expect = 1e-07
 Identities = 24/105 (22%), Positives = 33/105 (31%), Gaps = 17/105 (16%)

Query: 5   EDF---APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWF----RGETQLSEDTRTVM 57
             F   AP     P+     EG     +C+    P   + W        +  S   R  +
Sbjct: 346 ASFQCSAPFIMDAPRDLNISEGRMAELKCRT--PPMSSVKWLLPNGTVLSHASRHPRISV 403

Query: 58  KTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLN 102
                GT      L    V+ +D G+Y     N  G   AS  LN
Sbjct: 404 LND--GT------LNFSHVLLSDTGVYTCMVTNVAGNSNASAYLN 440

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 62.0 bits (151), Expect = 3e-11
 Identities = 21/82 (25%), Positives = 34/82 (41%), Gaps = 6/82 (7%)

Query: 125 DDGKRLLFECRIQADPAPTVIWSH-SGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIED 183
           D+G  + F CR   DP P ++W       V      + ++  DG     +LE+    ++D
Sbjct: 398 DEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTVFPDG-----TLEVRYAQVQD 452

Query: 184 AGKYKVTAKNELGESNATISLN 205
            G Y   A N  G  +    L+
Sbjct: 453 NGTYLCIAANAGGNDSMPAHLH 474

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 49.3 bits (118), Expect = 4e-07
 Identities = 26/103 (25%), Positives = 40/103 (38%), Gaps = 11/103 (10%)

Query: 5   EDF----APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFR-GETQLSEDTRTVMKT 59
             F    A    +K Q    DEG+ + F C+   +P P I+W    +  +S  +   +  
Sbjct: 378 NYFTCRRARIRDRKAQQVFVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTV 437

Query: 60  TPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLN 102
            P GT      LE+      D G Y   A N  G  +   +L+
Sbjct: 438 FPDGT------LEVRYAQVQDNGTYLCIAANAGGNDSMPAHLH 474

>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus} Length = 112

 Score = 56.2 bits (135), Expect = 1e-10
 Identities = 16/99 (16%), Positives = 31/99 (31%), Gaps = 6/99 (6%)

Query: 109 DGLAPTFLKKPSIRQEDDGKRLLFECRIQADPAP--TVIWSHSGVQVKEDKRHKFSIDKD 166
           D   P    +P  +    G  + F C   +      T  W      +++ +   ++  + 
Sbjct: 7   DFPXPQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRA 66

Query: 167 GHS----YFASLEIIDVTIEDAGKYKVTAKNELGESNAT 201
                  Y   L + +V     G Y+    N  G S + 
Sbjct: 67  QGGELMEYTTILRLRNVEFTSEGXYQCVISNHFGSSYSV 105

>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus} Length = 112

 Score = 53.5 bits (128), Expect = 1e-09
 Identities = 19/100 (19%), Positives = 34/100 (34%), Gaps = 6/100 (6%)

Query: 5   EDFA-PSFTQKPQLRQEDEGNRLIFECQLLCNPKPDI--VWFRGETQLSEDT---RTVMK 58
           +DF  P  T +P+ +    G+ + F C    +    +   W      L +        ++
Sbjct: 6   DDFPXPQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLR 65

Query: 59  TTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAAS 98
                  +Y   L L +V  T  G Y+    N  G   + 
Sbjct: 66  AQGGELMEYTTILRLRNVEFTSEGXYQCVISNHFGSSYSV 105

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X Length = 122

 Score = 56.3 bits (135), Expect = 2e-10
 Identities = 15/85 (17%), Positives = 30/85 (35%), Gaps = 6/85 (7%)

Query: 127 GKRLLFECRIQADPAPTV--IWSHSGVQVKEDKRHKFSIDKDGHSYF----ASLEIIDVT 180
           G++L+  C  + +    +   W +   + +  K     +     S      ++L I  VT
Sbjct: 23  GEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVT 82

Query: 181 IEDAGKYKVTAKNELGESNATISLN 205
             D G Y   A + L     +  + 
Sbjct: 83  RSDQGLYTCAASSGLMTKKNSTFVR 107

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X Length = 122

 Score = 45.1 bits (106), Expect = 1e-06
 Identities = 15/86 (17%), Positives = 26/86 (30%), Gaps = 5/86 (5%)

Query: 22  EGNRLIFECQLLCNPKPDIVW---FRGETQLSEDTRTVMKTTPIGTNKYLVA--LELDDV 76
            G +L+  C         I +   +       +        T  G+        L +D V
Sbjct: 22  VGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGV 81

Query: 77  IETDAGLYKVKAKNKMGEVAASINLN 102
             +D GLY   A + +     S  + 
Sbjct: 82  TRSDQGLYTCAASSGLMTKKNSTFVR 107

>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 56.0 bits (134), Expect = 2e-10
 Identities = 24/106 (22%), Positives = 44/106 (41%), Gaps = 7/106 (6%)

Query: 4   AEDFAPSFTQKPQLRQEDEGNRLIFECQLLCNP---KPDIVWFRGE----TQLSEDTRTV 56
           AE+    F +KP     + G   +   ++       KP I WF+G+       S    + 
Sbjct: 8   AEEPTGVFLKKPDSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGARFSF 67

Query: 57  MKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLN 102
            ++    +N Y V L +  V+  D G Y+++ K K    +   N++
Sbjct: 68  KESHNSASNVYTVELHIGKVVLGDRGYYRLEVKAKDTCDSCGFNID 113

>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 54.4 bits (130), Expect = 6e-10
 Identities = 22/103 (21%), Positives = 38/103 (36%), Gaps = 8/103 (7%)

Query: 111 LAPTFLKKPSIRQEDDGKRLLFECRIQADP---APTVIW---SHSGVQVKEDKRHKF--S 162
               FLKKP     + GK  +   ++        PT+ W       +  K   R  F  S
Sbjct: 11  PTGVFLKKPDSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGARFSFKES 70

Query: 163 IDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLN 205
            +   + Y   L I  V + D G Y++  K +    +   +++
Sbjct: 71  HNSASNVYTVELHIGKVVLGDRGYYRLEVKAKDTCDSCGFNID 113

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 59.4 bits (144), Expect = 2e-10
 Identities = 21/95 (22%), Positives = 42/95 (44%), Gaps = 8/95 (8%)

Query: 113 PTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSH-SGVQVKED-KRHKFSIDKDGHSY 170
           P  ++ P+     +G     +CR  +    +V W   +G  +     + + ++  DG   
Sbjct: 342 PVIVEPPADLNVTEGMAAELKCRA-STSLTSVSWITPNGTVMTHGAYKVRIAVLSDG--- 397

Query: 171 FASLEIIDVTIEDAGKYKVTAKNELGESNATISLN 205
             +L   +VT++D G Y     N +G + A+ +LN
Sbjct: 398 --TLNFTNVTVQDTGMYTCMVSNSVGNTTASATLN 430

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 47.4 bits (113), Expect = 2e-06
 Identities = 23/119 (19%), Positives = 34/119 (28%), Gaps = 21/119 (17%)

Query: 5   EDFA---PSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWF----RGETQLSEDTRTVM 57
             F    P   + P      EG     +C+        + W        T  +   R  +
Sbjct: 335 NYFTCYAPVIVEPPADLNVTEGMAAELKCRA-STSLTSVSWITPNGTVMTHGAYKVRIAV 393

Query: 58  KTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFL 116
            +   GT      L   +V   D G+Y     N +G   AS  LN     + G      
Sbjct: 394 LSD--GT------LNFTNVTVQDTGMYTCMVSNSVGNTTASATLN-----VTGTHHHHH 439

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens} Length = 731

 Score = 57.5 bits (138), Expect = 1e-09
 Identities = 27/185 (14%), Positives = 54/185 (29%), Gaps = 18/185 (9%)

Query: 30  CQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAK 89
            ++   P  + +W           R  +  +    N Y V  E+  +     G       
Sbjct: 98  VKVNNGPLGNPIWNISGDPTRTWNRAELAISTFWPNFYQVIFEV--ITSGHQGYL----- 150

Query: 90  NKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHS 149
                  A   +                +    + + G+   F+C               
Sbjct: 151 -------AIDEVKVLGHPCT--RTPHFLRIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQ 201

Query: 150 GVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFDSD 209
           G+ V++    +  +        AS  +++ T  DAGKY+   + E G   +  +      
Sbjct: 202 GIDVRDAPLKEIKVTSSRRFI-ASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELV-VK 259

Query: 210 DAPVP 214
           + PVP
Sbjct: 260 EPPVP 264

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A Length = 222

 Score = 55.0 bits (132), Expect = 3e-09
 Identities = 35/202 (17%), Positives = 60/202 (29%), Gaps = 30/202 (14%)

Query: 23  GNRLIFECQLLCNPKPD---IVWFR------------GETQLSEDT-----RTVMKTTPI 62
           G+ +  EC+     + D   ++ +             GE  L         R  +    +
Sbjct: 16  GSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLKDQL 75

Query: 63  GTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIR 122
                  AL++ DV   DAG+Y+       G     I +  +           +  P   
Sbjct: 76  SLGN--AALQITDVKLQDAGVYRCMISYG-GADYKRITVKVNAPYNKINQRILVVDP--- 129

Query: 123 QEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIE 182
                  L   C+ +  P   VIW+ S  QV    +   +  K     F     + +   
Sbjct: 130 -VTSEHEL--TCQAEGYPKAEVIWTSSDHQVLSG-KTTTTNSKREEKLFNVTSTLRINTT 185

Query: 183 DAGKYKVTAKNELGESNATISL 204
               +  T +    E N T  L
Sbjct: 186 TNEIFYCTFRRLDPEENHTAEL 207

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A Length = 222

 Score = 45.4 bits (107), Expect = 4e-06
 Identities = 26/147 (17%), Positives = 45/147 (30%), Gaps = 31/147 (21%)

Query: 127 GKRLLFECRIQADPAP-----TVIWSHSGVQV-------------KEDKRHKFSIDKDG- 167
           G  +  EC+   +         V W      +                 R +  + KD  
Sbjct: 16  GSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLKDQL 75

Query: 168 HSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPV 227
               A+L+I DV ++DAG Y+       G     I++        V     K       V
Sbjct: 76  SLGNAALQITDVKLQDAGVYRCMISYG-GADYKRITVK-------VNAPYNKINQRILVV 127

Query: 228 TKQSDDDLNDIVIECRLVGEPEPTISW 254
              +     +  + C+  G P+  + W
Sbjct: 128 DPVTS----EHELTCQAEGYPKAEVIW 150

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B Length = 171

 Score = 53.4 bits (128), Expect = 5e-09
 Identities = 20/176 (11%), Positives = 54/176 (30%), Gaps = 33/176 (18%)

Query: 35  NPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLV-----ALELDDVIETDAGLYKVKAK 89
            P  +++W + + +++E   +  +      N+  +     +L + ++  +D   Y++++ 
Sbjct: 21  VPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESP 80

Query: 90  NKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHS 149
           N          L         L    + KP I  E     L   C +       +     
Sbjct: 81  NITDT--MKFFLYV-------LEM--VSKPMIYWECSNATLT--CEVLEGTDVELKLYQG 127

Query: 150 GVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLN 205
              ++  ++                 +          +K  A N + + +    +N
Sbjct: 128 KEHLRSLRQ---------------KTMSYQWTNLRAPFKCKAVNRVSQESEMEVVN 168

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B Length = 171

 Score = 48.4 bits (115), Expect = 3e-07
 Identities = 19/134 (14%), Positives = 41/134 (30%), Gaps = 25/134 (18%)

Query: 127 GKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKD--GHSYF----ASLEIIDVT 180
              + F       P   V+W     +V E +  +F          Y      SL I ++T
Sbjct: 10  YGNVTFHVPSN-VPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLT 68

Query: 181 IEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVI 240
             D  +Y++ + N        + +        V     KP+            + ++  +
Sbjct: 69  SSDEDEYEMESPNITDTMKFFLYVL-----EMVS----KPMIYW---------ECSNATL 110

Query: 241 ECRLVGEPEPTISW 254
            C ++   +  +  
Sbjct: 111 TCEVLEGTDVELKL 124

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens} Length = 193

 Score = 52.3 bits (125), Expect = 1e-08
 Identities = 32/196 (16%), Positives = 58/196 (29%), Gaps = 30/196 (15%)

Query: 22  EGNRLIFECQLLCNPKPD-IVWFRGETQLSEDTRTVMKTTPI----GTNKYLV------A 70
            G  +    +     K + I W   ET L+       K+  I          +      +
Sbjct: 12  LGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFTQSYS 71

Query: 71  LELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRL 130
           L+L ++   D G Y+ +   K     +S  L      +  L    +   S   ++    L
Sbjct: 72  LQLSNLKMEDTGSYRAQISTKTSAKLSSYTLRI----LRQLRNIQVTNHSQLFQNMTCEL 127

Query: 131 LFECRIQ-ADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKV 189
              C ++ AD   +  W   G  +        S D                I     Y  
Sbjct: 128 HLTCSVEDADDNVSFRWEALGNTLSSQPNLTVSWD--------------PRISSEQDYTC 173

Query: 190 TAKNELGESNATISLN 205
            A+N +   + ++S  
Sbjct: 174 IAENAVSNLSFSVSAQ 189

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens} Length = 193

 Score = 47.7 bits (113), Expect = 6e-07
 Identities = 16/141 (11%), Positives = 40/141 (28%), Gaps = 22/141 (15%)

Query: 127 GKRLLFECRIQADPAPT-VIWSHSG-----VQVKEDKRHKFSIDKDGHSYF------ASL 174
           G+ +       A      + W  +      +   E K  +  +               SL
Sbjct: 13  GESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFTQSYSL 72

Query: 175 EIIDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDD 234
           ++ ++ +ED G Y+     +     ++ +L                  T      Q+   
Sbjct: 73  QLSNLKMEDTGSYRAQISTKTSAKLSSYTLRILRQL-------RNIQVTNHSQLFQNMTC 125

Query: 235 LNDIVIECRLV-GEPEPTISW 254
             ++ + C +   +   +  W
Sbjct: 126 --ELHLTCSVEDADDNVSFRW 144

>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 Length = 291

 Score = 48.7 bits (115), Expect = 5e-07
 Identities = 33/214 (15%), Positives = 59/214 (27%), Gaps = 22/214 (10%)

Query: 9   PSFTQKPQLRQEDEGNRLIFECQLL-CNPKPD--IVWFRGETQLSEDTRTVMKTTPIGTN 65
                 P    +  G  L   CQ+    P+ +  +V  RGE +L  +             
Sbjct: 87  ERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAVGEPAE----- 141

Query: 66  KYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDG-----LAPTFLKKPS 120
              V   +    +     +  + +  +      +  N S             P  L  P 
Sbjct: 142 ---VTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPR 198

Query: 121 IRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVT 180
           + +     +    C +      +    H  +   +      +   D  S  AS+    VT
Sbjct: 199 VLEV--DTQGTVVCSLDGLFPVSEAQVHLALG-DQRLNPTVTYGNDSFSAKASV---SVT 252

Query: 181 IEDAGKYKVTAKNELGESNATISLNFDSDDAPVP 214
            ED G  ++T    LG  +            P P
Sbjct: 253 AEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAP 286

>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus} Length = 108

 Score = 45.2 bits (107), Expect = 1e-06
 Identities = 13/67 (19%), Positives = 29/67 (43%), Gaps = 7/67 (10%)

Query: 127 GKRLLFECRIQADPAPTVIWSHSGVQV------KEDKRHKFSIDKDGHSYFASLEIIDVT 180
           G   +  CR+  +   ++ WS+   Q       K  + ++  + +       S+ + DV+
Sbjct: 21  GGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHEL-SISVSDVS 79

Query: 181 IEDAGKY 187
           + D G+Y
Sbjct: 80  LSDEGQY 86

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus} Length = 180

 Score = 45.3 bits (107), Expect = 3e-06
 Identities = 18/113 (15%), Positives = 39/113 (34%), Gaps = 19/113 (16%)

Query: 142 PTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNAT 201
             + +  +G +   +   K  +D D  +   +L I +V+ ED G Y +   +E  E    
Sbjct: 41  KILEYFPNGKKTVFESVFKDRVDLDKTNG--ALRIYNVSKEDRGDYYMRMLHE-TEDQWK 97

Query: 202 ISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLVGEPEPTISW 254
           I++        V     KP+         +        + C ++   +  +  
Sbjct: 98  ITMEV---YEMVS----KPMIY---WECSN------ATLTCEVLEGTDVELKL 134

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus} Length = 180

 Score = 44.5 bits (105), Expect = 6e-06
 Identities = 20/193 (10%), Positives = 48/193 (24%), Gaps = 36/193 (18%)

Query: 22  EGNRLIFECQL-LCNPKPDIVWFRGETQL---SEDTRTVMKTTPIGTNKYLV-----ALE 72
            G+ +              + W     Q                +  ++  +     AL 
Sbjct: 13  TGSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDLDKTNGALR 72

Query: 73  LDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLF 132
           + +V + D G Y ++  ++  +    I +              + KP I  E        
Sbjct: 73  IYNVSKEDRGDYYMRMLHETEDQW-KITMEV-------YEM--VSKPMIYWE--CSNATL 120

Query: 133 ECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAK 192
            C +       +        ++  ++   S                        +K  A 
Sbjct: 121 TCEVLEGTDVELKLYQGKEHLRSLRQKTMSYQWT---------------NLRAPFKCKAV 165

Query: 193 NELGESNATISLN 205
           N + + +    +N
Sbjct: 166 NRVSQESEMEVVN 178

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A* Length = 201

 Score = 45.4 bits (107), Expect = 4e-06
 Identities = 23/122 (18%), Positives = 42/122 (34%), Gaps = 22/122 (18%)

Query: 140 PAPTVIWSHSG-VQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYK-----VTAKN 193
               V+   SG + +  + +++   D   +    S+ I+ +   D G Y+          
Sbjct: 35  EKKMVLTMMSGDMNIWPEYKNRTIFDITNN---LSIVILALRPSDEGTYECVVLKYEKDA 91

Query: 194 ELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLVG-EPEPTI 252
              E  A ++L+       V  +   P      ++       N   I C   G  PEP +
Sbjct: 92  FKREHLAEVTLS-------VKADFPTPS-----ISDFEIPTSNIRRIICSTSGGFPEPHL 139

Query: 253 SW 254
           SW
Sbjct: 140 SW 141

>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens} Length = 124

 Score = 43.8 bits (103), Expect = 5e-06
 Identities = 11/68 (16%), Positives = 24/68 (35%), Gaps = 7/68 (10%)

Query: 127 GKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHK------FSIDKDGHSYFASLEIIDVT 180
           G+ L  +C        ++ W            +       + +     +   S+ + +VT
Sbjct: 16  GQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHHSANQL-SITVPNVT 74

Query: 181 IEDAGKYK 188
           ++D G YK
Sbjct: 75  LQDEGVYK 82

>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A Length = 214

 Score = 43.7 bits (102), Expect = 1e-05
 Identities = 24/124 (19%), Positives = 40/124 (32%), Gaps = 19/124 (15%)

Query: 139 DPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGE- 197
             A  V  ++   +VK + + +F +  D      SL I D  +ED G Y    +      
Sbjct: 49  YYAEVVATNNPDRRVKPETQGRFRLLGDVQKKNCSLSIGDARMEDTGSYFFRVERGRDVK 108

Query: 198 ---SNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLV----GEPEP 250
                  ++L   +          +P+ + RP             + C L       P  
Sbjct: 109 YSYQQNKLNLEVTALIEKPDIHFLEPLESGRPTR-----------LSCSLPGSCEAGPPL 157

Query: 251 TISW 254
           T SW
Sbjct: 158 TFSW 161

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A Length = 186

 Score = 42.9 bits (100), Expect = 2e-05
 Identities = 25/194 (12%), Positives = 44/194 (22%), Gaps = 44/194 (22%)

Query: 23  GNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIET-DA 81
           G  +   C L  +   ++ W +   +L +                   L L D  E  D+
Sbjct: 14  GTSVELTCPL--DSDENLKWEKNGQELPQKHDK--------------HLVLQDFSEVEDS 57

Query: 82  GLYKVKAKNKMGEVAASINLNF-------SREQIDGLAPTFLKKPSIRQEDDGKRLLFEC 134
           G Y              +                   A     K    Q +  K L+   
Sbjct: 58  GYYVCYTPASNKNTYLYLKARVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVD 117

Query: 135 RIQAD---------PAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAG 185
             + D            T+ W   G  +      K            +  + +   +  G
Sbjct: 118 GSRGDGSVLLTCGLTDKTIKWLKDGSIISPLNATK-----------NTWNLGNNAKDPRG 166

Query: 186 KYKVTAKNELGESN 199
            Y+     E     
Sbjct: 167 TYQCQGAKETSNPL 180

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A Length = 226

 Score = 43.5 bits (102), Expect = 2e-05
 Identities = 27/122 (22%), Positives = 42/122 (34%), Gaps = 19/122 (15%)

Query: 139 DPAPTVIWSHSGVQVKEDKRHKF----SIDKDG-HSYFASLEIIDVTIEDAGKYKVTAKN 193
                V     G +V++ +   +    SI +DG  +  A+L I +VT  D+GKY    ++
Sbjct: 45  SLRQVVNVYADGKEVEDRQSAPYRGRTSILRDGITAGKAALRIHNVTASDSGKYLCYFQD 104

Query: 194 ELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLVGE-PEPTI 252
                 A + L                                 I +ECR  G  P+P I
Sbjct: 105 GDFYEKALVEL-------------KVAALGSDLHVDVKGYKDGGIHLECRSTGWYPQPQI 151

Query: 253 SW 254
            W
Sbjct: 152 QW 153

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A Length = 226

 Score = 42.8 bits (100), Expect = 3e-05
 Identities = 28/176 (15%), Positives = 53/176 (30%), Gaps = 18/176 (10%)

Query: 35  NPKPDIVWFRGETQLSEDT-----RTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAK 89
             +   V+  G+      +     RT +    I   K   AL + +V  +D+G Y    +
Sbjct: 46  LRQVVNVYADGKEVEDRQSAPYRGRTSILRDGITAGK--AALRIHNVTASDSGKYLCYFQ 103

Query: 90  NKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQAD-PAPTVIWSH 148
           +      A + L  +                  +      +  ECR     P P + WS+
Sbjct: 104 DGDFYEKALVELKVA--------ALGSDLHVDVKGYKDGGIHLECRSTGWYPQPQIQWSN 155

Query: 149 SGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISL 204
           +  +           D  G    A+   + +          T ++ L     T S+
Sbjct: 156 NKGENIPTVEAPVVADGVGLYAVAA--SVIMRGSSGEGVSCTIRSSLLGLEKTASI 209

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A Length = 231

 Score = 42.9 bits (100), Expect = 3e-05
 Identities = 20/119 (16%), Positives = 33/119 (27%), Gaps = 11/119 (9%)

Query: 140 PAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYF--ASLEIIDVTIEDAGKYK-VTAKNELG 196
             P +  +       +   H        +       L + +  + D   Y  V      G
Sbjct: 43  ARPRLASAEMQGSELQVTMHDTRGRSPPYQLDSQGRLVLAEAQVGDERDYVCVVRAGAAG 102

Query: 197 ESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLV-GEPEPTISW 254
            + AT  LN       V  +      +    T    +D    +  C    G P P I+W
Sbjct: 103 TAEATARLN-------VFAKPEATEVSPNKGTLSVMEDSAQEIATCNSRNGNPAPKITW 154

>1qfo_A Protein (sialoadhesin); immunoglobulin superfamily, carbohydrate binding, immune system; HET: SIA GAL GLC; 1.85A {Mus musculus} SCOP: b.1.1.1 PDB: 1od7_A* 1oda_A* 1od9_A* 1qfp_A 2bve_A* 1url_A* Length = 119

 Score = 39.1 bits (91), Expect = 2e-04
 Identities = 11/53 (20%), Positives = 20/53 (37%)

Query: 135 RIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKY 187
              +     VI S     V +  R +  +  +      +L + D+  ED+G Y
Sbjct: 42  YDYSGKRQVVIHSGDPKLVDKRFRGRAELMGNMDHKVCNLLLKDLKPEDSGTY 94

>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 112

 Score = 38.0 bits (88), Expect = 4e-04
 Identities = 19/119 (15%), Positives = 45/119 (37%), Gaps = 21/119 (17%)

Query: 110 GLAPT--FLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRH-------- 159
           G + T   +      Q  DG+  +F   +      T  W  +G ++K ++          
Sbjct: 4   GSSGTARLVAGLEDVQVYDGEDAVFSLDLSTIIQGT--WFLNGEELKSNEPEGQVEPGAL 61

Query: 160 KFSIDKDGHSYFASLEIIDVTIEDAGKY-KVTAKNELGESNATISLNFDSDDAPVPGEG 217
           ++ I++ G  +   L +  V  +D+G     +      + +A +++     ++  P  G
Sbjct: 62  RYRIEQKGLQH--RLILHAVKHQDSGALVGFSCPG--VQDSAALTIQ----ESSGPSSG 112

>1nko_A Sialic acid binding IG-like lectin 7; immunoglobulin, siglec7, immune system; 1.45A {Homo sapiens} SCOP: b.1.1.1 PDB: 2g5r_A* 1o7v_A* 2df3_A* 1o7s_A* 2hrl_A* Length = 132

 Score = 38.0 bits (88), Expect = 6e-04
 Identities = 13/49 (26%), Positives = 23/49 (46%)

Query: 139 DPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKY 187
                V  ++    V+E+ R +F +  D  +   +L I D  + DAG+Y
Sbjct: 55  SWKAPVATNNPAWAVQEETRDRFHLLGDPQTKNCTLSIRDARMSDAGRY 103

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	254
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	100.0
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	100.0
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	100.0
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	100.0
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	100.0
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	100.0
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	100.0
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	100.0
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	100.0
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	100.0
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	99.98
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	99.98
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	99.97
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	99.97
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	99.97
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	99.97
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	99.97
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	99.97
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	99.97
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	99.97
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	99.97
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	99.97
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	99.97
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	99.97
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	99.97
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	99.97
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	99.97
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	99.97
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	99.97
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	99.97
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	99.97
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	99.97
2rcj_C	523	Light chain; immunoglobulin M, polymeric antibodie	99.97
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	99.97
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	99.97
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	99.97
4fqp_A	313	Poliovirus receptor; immunoglobulin-like domain, I	99.97
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	99.97
2wng_A	327	Tyrosine-protein phosphatase non-receptor type sub	99.97
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	99.97
2rcj_C	523	Light chain; immunoglobulin M, polymeric antibodie	99.97
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	99.97
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	99.97
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	99.96
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	99.96
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	99.96
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	99.96
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	99.96
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	99.96
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	99.96
4fa8_A	203	Secreted protein BARF1; immunoglobulin-like domain	99.96
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	99.96
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	99.96
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	99.96
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	99.96
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	99.96
1qgc_4	438	Protein (immunoglobulin); virus-antibody complex,	99.96
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	99.96
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	99.96
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	99.96
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	99.96
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	99.96
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	99.96
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	99.96
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	99.96
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	99.95
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	99.95
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	99.95
4fom_A	308	Poliovirus receptor-related protein 3; immunoglobu	99.95
1qgc_4	438	Protein (immunoglobulin); virus-antibody complex,	99.95
1za6_B	344	IGG heavy chain; immunoglobulin fold, CH2-domain-d	99.95
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	99.95
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	99.95
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	99.95
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	99.95
2wqr_A	323	IG epsilon chain C region; immune system, immunogl	99.95
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	99.95
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	99.95
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	99.95
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	99.95
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	99.95
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	99.95
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	99.95
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.95
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	99.95
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	99.95
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	99.95
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	99.95
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	99.95
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	99.94
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	99.94
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	99.94
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	99.94
1igt_B	444	IGG2A intact antibody - MAB231; intact immunoglobu	99.94
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	99.94
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	99.94
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	99.94
1hzh_H	457	IGG, immunoglobulin heavy chain; antibody, immune	99.94
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	99.94
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	99.94
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	99.94
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	99.94
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	99.94
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	99.94
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	99.94
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	99.94
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	99.94
2d3v_A	196	Leukocyte immunoglobulin-like receptor subfamily A	99.94
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	99.94
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	99.94
4frw_A	218	Poliovirus receptor-related protein 4; immunoglobu	99.94
1ugn_A	198	LIR1, leukocyte immunoglobulin-like receptor 1; im	99.94
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	99.94
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	99.94
3mj8_L	213	Stimulatory hamster antibody HL4E10 FAB light CHA;	99.93
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	99.93
1hzh_H	457	IGG, immunoglobulin heavy chain; antibody, immune	99.93
3nl4_L	213	Antigen binding fragment, immunoglobulin IGG - LI;	99.93
1igt_B	444	IGG2A intact antibody - MAB231; intact immunoglobu	99.93
3d9a_L	213	Light chain of hyhel10 antibody fragment (FAB); ly	99.93
2gi7_A	184	GPVI protein; IG-like domains, blood clotting, cel	99.93
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	99.93
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	99.93
1oll_A	188	NK receptor; immune system/receptor, NK cell trigg	99.93
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	99.93
1lk3_L	210	9D7 light chain; antigen-antibody complex, immune	99.93
4fqp_A	313	Poliovirus receptor; immunoglobulin-like domain, I	99.93
1iga_A	475	IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg	99.92
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	99.92
1igy_B	434	IGG1 intact antibody MAB61.1.3; intact immunoglobu	99.92
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	99.92
3s96_B	218	3B5H10 FAB light chain; huntingtin, immune system;	99.92
3r06_A	213	Anti-mouse CD3epsilon antibody 2C11 FAB light CHA;	99.92
3tv3_L	211	PGT128 light chain, IG lambda-2 chain C regions; F	99.92
1igy_B	434	IGG1 intact antibody MAB61.1.3; intact immunoglobu	99.92
1b6u_A	257	KIR2DL3, P58 killer cell inhibitory receptor; natu	99.92
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	99.92
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	99.92
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	99.92
1c1e_H	219	Catalytic antibody 1E9 (heavy chain); diels-alder,	99.92
4i0k_A	222	CD276 antigen; immunoglobulin domain, glycoprotein	99.92
1q0x_L	212	FAB 9B1, light chain; anti-morphine antibody, FAB	99.92
1iga_A	475	IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg	99.92
3sob_L	237	Antibody light chain; beta propeller, protein bind	99.92
2rgs_A	218	I, IG gamma-2B heavy chain; FC-fragment, immunoglo	99.91
2c1o_A	254	IGK-C protein; FAB fragment, enantioselective, fin	99.91
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	99.91
2vol_A	207	Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry,	99.91
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	99.91
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	99.91
1q9r_B	222	S25-2 FAB (IGG1K) heavy chain; antigen-binding fra	99.91
2ghw_B	247	Anti-SARS SCFV antibody, 80R; S protein, neutraliz	99.91
2wng_A	327	Tyrosine-protein phosphatase non-receptor type sub	99.91
2xzc_L	216	FAB A.17 light chain; immune system; HET: XOP; 1.3	99.91
1nfd_E	212	H57 FAB; complex (immunoreceptor-immunoglobulin),	99.91
3pv7_A	248	B7-H6, IG-like domain-containing protein DKFZP686O	99.91
3d9a_H	210	Heavy chain of hyhel10 antibody fragment (FAB); ly	99.91
1nkr_A	201	P58-CL42 KIR; inhibitory receptor, natural killer	99.91
1p6f_A	242	NKP46, natural cytotoxicity triggering receptor 1;	99.91
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	99.91
4fom_A	308	Poliovirus receptor-related protein 3; immunoglobu	99.91
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	99.9
1nqb_A	256	Single-chain antibody fragment; multivalent antibo	99.9
3bkj_L	252	WO2 IGG2A FAB fragment light chain kappa; abeta, F	99.9
1moe_A	240	Anti-CEA MAB T84.66; anti carcinoembryonic antigen	99.9
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	99.9
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	99.9
3auv_A	276	SC-DSFV derived from the G6-FAB; SC-DSFV (disulfid	99.9
4dzb_B	246	Vbeta2 (MAIT T cell receptor); immune system; 1.70	99.9
1pz5_B	220	Heavy chain of FAB (SYA/J6); antibody-antigen stru	99.9
3tf7_C	256	42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE;	99.9
3uzq_A	253	Anti-dengue MAB 4E11; dengue antibody neutralizati	99.9
2p1y_A	238	Bispecific alpha/beta TCR; autoimmunity, immunoglo	99.9
3esu_F	250	Antibody 14B7* light chain and antibody 14B7* heav	99.9
1f3r_B	257	FV antibody fragment; IG-fold, immuno complex, ant	99.9
4fmk_A	225	Poliovirus receptor-related protein 2; immunoglobu	99.9
2zg1_A	214	Sialic acid-binding IG-like lectin 5; siglec-5 inh	99.9
3juy_B	256	3B3 single chain variant HIV-1 antibody; envelope	99.9
1mju_H	227	Immunoglobulin MS6-12; catalytic antibody, ester h	99.9
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	99.89
2fbj_H	220	IGA-kappa J539 FAB (heavy chain); immunoglobulin;	99.89
1l6x_A	207	Immunoglobulin gamma-1 heavy chain constant regio;	99.89
1i1c_A	239	IGG2A, IG gamma-2A chain C region; FC, immune syst	99.89
2j6e_L	234	IGM, FAB light chain; autoimmune complex human IGM	99.89
1dee_B	223	IGM RF 2A2; FAB-IBP complex 2.7A resolution bindin	99.89
3umt_A	256	SCFV heavy chain and light chain; stability engine	99.89
3gkz_A	257	Anti-methamphetamine single chain FV; therapeutic	99.89
2znx_A	242	SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, s	99.89
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	99.89
1op3_H	225	FAB 2G12, heavy chain; domain-swapped FAB 2G12, an	99.89
1qok_A	282	MFE-23 recombinant antibody fragment; immunoglobul	99.89
3omz_A	259	Human vdelta1 gamma delta T cell receptor delta1A;	99.89
1zvo_C	512	Myeloma immunoglobulin D delta; immunoglobulin fol	99.89
1svz_A	247	Immunoglobulin;, single-chain FV fragment 1696; an	99.89
3bae_H	228	WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO	99.89
1hxm_B	242	Gamma-delta T-cell receptor; IG domain, TCR, GDTCR	99.89
3bqu_C	233	3H6 FAB light chain; beta sheet, immune system; 3.	99.88
1gsm_A	210	Madcam-1, mucosal addressin cell adhesion molecule	99.88
1dn0_B	232	IGM-kappa cold agglutinin (heavy chain); FAB, anti	99.88
3liz_H	253	4C3 monoclonal antibody heavy chain; hydrolase-imm	99.88
3ux9_B	256	SCFV antibody; five helices, long loop connecting	99.88
4ei6_B	245	Vbeta16 XV19 type II natural killer T cell recept	99.88
2xqy_G	261	A13-D6.3 monoclonal antibody, envelope glycoprotei	99.88
3q5y_A	240	TCR N15 beta; IG, T cell receptor, antigen peptide	99.88
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	99.88
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	99.88
2gjj_A	264	A21 single-chain antibody fragment against ERBB2;	99.88
2wqr_A	323	IG epsilon chain C region; immune system, immunogl	99.88
2w59_A	231	IGY FCU3-4; immunoglobulin, avian, immune system;	99.87
3nfj_J	245	T cell receptor beta chain; immunoglobulin family,	99.87
3bn9_D	257	E2 FAB heavy chain; antibody-protease complex, pro	99.87
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	99.87
3pl6_D	268	MBP peptide / T-cell receptor beta chain chimera;	99.87
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	99.87
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	99.87
3m8o_H	221	Immunoglobulin A1 heavy chain; immunoglobulin fold	99.87
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	99.87
1zvo_C	512	Myeloma immunoglobulin D delta; immunoglobulin fol	99.86
1x9q_A	268	SCFV, 4M5.3 anti-fluorescein single chain antibody	99.86
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	99.86
1c5d_H	215	Monoclonal antibody against the main immunogenic t	99.86
2gki_A	291	Nuclease; anti-DNA antibody, catalytic antibody, i	99.86
3nl4_H	215	Antigen binding fragment,immunoglobulin IGG - HEA;	99.86
2wbj_D	279	OB TCR; transmembrane, immune response, T cell rec	99.86
3fku_X	280	Neutralizing antibody F10; influenza, hemagglutini	99.85
3knb_A	100	Titin; IG-like, titin, OBSL1, ATP-binding, calmodu	99.85
3knb_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, AT	99.85
3qib_D	270	2B4 beta chain; IG domain, immune system; HET: NAG	99.85
1bec_A	238	14.3.D T cell antigen receptor; T cell receptor; 1	99.84
4acp_A	240	IG gamma-1 chain C region; immune system, antibody	99.84
2aty_A	376	Complement receptor chimeric conjugate CR2-IG; imm	99.84
1ypz_F	230	T-cell receptor gamma chain, beta-2-microglobulin;	99.84
1za6_B	344	IGG heavy chain; immunoglobulin fold, CH2-domain-d	99.84
3to4_D	253	NKT vbeta2 (mouse variable domain, human constant;	99.84
3tv3_H	239	PGT128 heavy chain, IG gamma-1 chain C region; FAB	99.83
3qhz_H	232	Human monoclonal antibody DEL2D1, FAB heavy chain;	99.83
3o3u_N	581	Maltose-binding periplasmic protein, advanced Gly	99.83
3u2s_H	248	PG9 heavy chain; greek KEY, immunoglobulin, immune	99.83
1oga_E	252	TRBC1, T-cell receptor beta chain C region; immune	99.82
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	99.82
1mq8_A	291	ICAM-1, intercellular adhesion molecule-1, CD54 an	99.82
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	99.81
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	99.81
1ow0_A	214	IG alpha-1 chain C region; IGA1, fcari, CD89, anti	99.81
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	99.8
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	99.8
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	99.8
4fa8_A	203	Secreted protein BARF1; immunoglobulin-like domain	99.8
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	99.8
3knb_A	100	Titin; IG-like, titin, OBSL1, ATP-binding, calmodu	99.79
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	99.79
2c1o_A	254	IGK-C protein; FAB fragment, enantioselective, fin	99.79
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	99.78
3n9g_H	230	FAB fragment of MAB CR4354, heavy chain; human neu	99.78
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	99.78
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	99.78
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	99.78
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	99.77
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	99.77
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	99.77
3iu4_H	263	CHP3 FAB heavy chain; antibody, ganglioside, idiot	99.77
1ypz_E	207	T cell receptor delta, beta-2-microglobulin; H2-T2	99.77
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	99.77
3mlr_H	226	Human monoclonal anti-HIV-1 GP120 V3 antibody 255	99.77
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	99.76
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	99.76
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	99.76
3knb_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, AT	99.76
3sob_H	256	Antibody heavy chain, low-density lipoprotein rece	99.76
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	99.75
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	99.75
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	99.75
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	99.74
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	99.74
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	99.74
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	99.74
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	99.74
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	99.74
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	99.73
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	99.73
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	99.73
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	99.73
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	99.73
1iam_A	185	ICAM-1, CD54, intercellular adhesion molecule-1; r	99.73
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	99.73
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	99.73
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	99.73
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	99.72
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	99.72
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	99.72
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	99.72
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	99.72
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	99.72
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	99.71
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	99.71
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	99.71
3f8u_B	401	Tapasin; endoplasmic reticulum, glycoprotein, immu	99.71
1he7_A	126	High affinity nerve growth factor receptor; transf	99.71
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	99.71
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	99.7
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	99.7
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	99.7
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	99.7
2edn_A	118	Myosin-binding protein C, fast-type; beta-sandwich	99.7
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	99.69
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	99.69
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	99.69
1mq8_A	291	ICAM-1, intercellular adhesion molecule-1, CD54 an	99.69
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	99.69
1hxm_A	229	Gamma-delta T-cell receptor; IG domain, TCR, GDTCR	99.68
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	99.68
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	99.68
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	99.68
2d3v_A	196	Leukocyte immunoglobulin-like receptor subfamily A	99.68
2lu7_A	84	Obscurin-like protein 1; structural genomics, nort	99.68
3u1s_H	267	FAB PGT145 heavy chain; IGG, broadly neutralizing	99.68
3nl4_L	213	Antigen binding fragment, immunoglobulin IGG - LI;	99.67
2lvc_A	91	Obscurin-like protein 1; structural genomics, nort	99.67
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	99.67
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	99.67
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	99.67
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	99.66
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	99.66
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	99.66
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	99.66
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	99.66
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	99.65
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	99.65
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	99.65
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	99.65
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	99.65
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	99.65
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	99.65
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	99.65
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	99.64
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	99.64
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	99.64
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	99.64
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	99.64
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	99.64
3mj8_L	213	Stimulatory hamster antibody HL4E10 FAB light CHA;	99.64
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	99.64
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	99.64
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	99.64
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	99.63
1ugn_A	198	LIR1, leukocyte immunoglobulin-like receptor 1; im	99.63
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	99.63
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	99.63
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	99.63
2gi7_A	184	GPVI protein; IG-like domains, blood clotting, cel	99.63
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	99.63
1he7_A	126	High affinity nerve growth factor receptor; transf	99.63
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	99.63
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	99.63
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	99.63
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	99.63
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	99.62
3so5_A	112	LIG-3, leucine-rich repeats and immunoglobulin-lik	99.62
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	99.62
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	99.62
3bn3_B	196	ICAM-5, intercellular adhesion molecule 5, telence	99.62
1c1e_H	219	Catalytic antibody 1E9 (heavy chain); diels-alder,	99.62
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	99.62
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	99.62
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	99.62
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	99.62
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	99.62
1pd6_A	104	Cardiac MYBP-C;, myosin-binding protein C, cardiac	99.62
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	99.61
2rgs_A	218	I, IG gamma-2B heavy chain; FC-fragment, immunoglo	99.61
2ens_A	96	Advanced glycosylation END product-specific recept	99.61
3m45_A	108	Cell adhesion molecule 2; IG fold, dimer, disulfid	99.61
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	99.61
2dm7_A	108	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	99.61
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	99.61
4acp_A	240	IG gamma-1 chain C region; immune system, antibody	99.6
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	99.6
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	99.6
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	99.6
1ntl_A	551	CRRY-IG; immunology, complement, glycoprotein, SCR	99.6
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	99.6
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	99.6
2ghw_B	247	Anti-SARS SCFV antibody, 80R; S protein, neutraliz	99.6
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	99.59
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	99.59
3d9a_L	213	Light chain of hyhel10 antibody fragment (FAB); ly	99.59
1pz5_B	220	Heavy chain of FAB (SYA/J6); antibody-antigen stru	99.59
1oll_A	188	NK receptor; immune system/receptor, NK cell trigg	99.59
2e7b_A	103	Obscurin; IG-like domain, structural genomics, NPP	99.59
2e6q_A	112	Obscurin-like protein 1; IG-like domain, structura	99.59
3r06_A	213	Anti-mouse CD3epsilon antibody 2C11 FAB light CHA;	99.59
3qr2_A	137	Basigin; CD147, EMMPRIN, immunoglobulin-like domai	99.59
4hwu_A	95	Fibroblast growth factor receptor 2; FGFR2, KGFR,	99.59
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	99.59
3tv3_L	211	PGT128 light chain, IG lambda-2 chain C regions; F	99.58
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	99.58
3qib_D	270	2B4 beta chain; IG domain, immune system; HET: NAG	99.58
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	99.58
1lk3_L	210	9D7 light chain; antigen-antibody complex, immune	99.58
2dku_A	103	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	99.58
1q9r_B	222	S25-2 FAB (IGG1K) heavy chain; antigen-binding fra	99.58
1nkr_A	201	P58-CL42 KIR; inhibitory receptor, natural killer	99.58
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.58
3s96_B	218	3B5H10 FAB light chain; huntingtin, immune system;	99.58
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	99.58
3d9a_H	210	Heavy chain of hyhel10 antibody fragment (FAB); ly	99.58
1moe_A	240	Anti-CEA MAB T84.66; anti carcinoembryonic antigen	99.58
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	99.57
1nqb_A	256	Single-chain antibody fragment; multivalent antibo	99.57
2lu7_A	84	Obscurin-like protein 1; structural genomics, nort	99.57
3umt_A	256	SCFV heavy chain and light chain; stability engine	99.57
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	99.56
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	99.56
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	99.56
2vol_A	207	Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry,	99.56
2edn_A	118	Myosin-binding protein C, fast-type; beta-sandwich	99.56
2zg1_A	214	Sialic acid-binding IG-like lectin 5; siglec-5 inh	99.56
3juy_B	256	3B3 single chain variant HIV-1 antibody; envelope	99.55
3pv7_A	248	B7-H6, IG-like domain-containing protein DKFZP686O	99.55
1op3_H	225	FAB 2G12, heavy chain; domain-swapped FAB 2G12, an	99.55
1gsm_A	210	Madcam-1, mucosal addressin cell adhesion molecule	99.55
2p1y_A	238	Bispecific alpha/beta TCR; autoimmunity, immunoglo	99.55
1q0x_L	212	FAB 9B1, light chain; anti-morphine antibody, FAB	99.55
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	99.55
3gkz_A	257	Anti-methamphetamine single chain FV; therapeutic	99.55
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	99.55
1f3r_B	257	FV antibody fragment; IG-fold, immuno complex, ant	99.55
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.55
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.54
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	99.54
3sob_L	237	Antibody light chain; beta propeller, protein bind	99.54
2lvc_A	91	Obscurin-like protein 1; structural genomics, nort	99.54
1qok_A	282	MFE-23 recombinant antibody fragment; immunoglobul	99.53
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	99.53
2fbj_H	220	IGA-kappa J539 FAB (heavy chain); immunoglobulin;	99.53
4dzb_B	246	Vbeta2 (MAIT T cell receptor); immune system; 1.70	99.53
4f9l_D	259	20.1 anti-BTN3A1 antibody fragment; B7 superfamily	99.53
3uzq_A	253	Anti-dengue MAB 4E11; dengue antibody neutralizati	99.53
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	99.53
1c5d_H	215	Monoclonal antibody against the main immunogenic t	99.53
3omz_A	259	Human vdelta1 gamma delta T cell receptor delta1A;	99.53
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	99.53
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	99.53
3bae_H	228	WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO	99.53
1mju_H	227	Immunoglobulin MS6-12; catalytic antibody, ester h	99.52
1l6x_A	207	Immunoglobulin gamma-1 heavy chain constant regio;	99.52
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	99.52
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	99.52
3rbg_A	124	Cytotoxic and regulatory T-cell molecule; IGV, crt	99.52
2znx_A	242	SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, s	99.52
3tf7_C	256	42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE;	99.52
2xzc_L	216	FAB A.17 light chain; immune system; HET: XOP; 1.3	99.51
1i1c_A	239	IGG2A, IG gamma-2A chain C region; FC, immune syst	99.51
1dee_B	223	IGM RF 2A2; FAB-IBP complex 2.7A resolution bindin	99.51
2w59_A	231	IGY FCU3-4; immunoglobulin, avian, immune system;	99.51
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	99.51
3esu_F	250	Antibody 14B7* light chain and antibody 14B7* heav	99.51
3auv_A	276	SC-DSFV derived from the G6-FAB; SC-DSFV (disulfid	99.51
4frw_A	218	Poliovirus receptor-related protein 4; immunoglobu	99.51
1nfd_E	212	H57 FAB; complex (immunoreceptor-immunoglobulin),	99.51
4i0k_A	222	CD276 antigen; immunoglobulin domain, glycoprotein	99.5
3bkj_L	252	WO2 IGG2A FAB fragment light chain kappa; abeta, F	99.5
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	99.5
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	99.5
2eys_A	210	NKT15; natural killer T cell receptor, immune syst	99.5
1b6u_A	257	KIR2DL3, P58 killer cell inhibitory receptor; natu	99.5
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	99.49
1zxq_A	192	ICAM-2, intercellular adhesion molecule-2; immunog	99.49
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	99.49
2eo1_A	102	OBSCN protein, cDNA FLJ14124 FIS, clone mamma10024	99.48
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	99.48
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	99.48
2xqy_G	261	A13-D6.3 monoclonal antibody, envelope glycoprotei	99.48
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	99.48
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	99.48
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	99.48
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	99.48
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	99.48
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	99.47
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	99.47
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	99.47
1p6f_A	242	NKP46, natural cytotoxicity triggering receptor 1;	99.47
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	99.46
3ux9_B	256	SCFV antibody; five helices, long loop connecting	99.46
3c6l_A	185	TCR 2W20 alpha chain; TCR-PMHC complex; 3.40A {Mus	99.19
1svz_A	247	Immunoglobulin;, single-chain FV fragment 1696; an	99.46
3bn9_D	257	E2 FAB heavy chain; antibody-protease complex, pro	99.46
1hxm_B	242	Gamma-delta T-cell receptor; IG domain, TCR, GDTCR	99.46
3pl6_D	268	MBP peptide / T-cell receptor beta chain chimera;	99.45
4ei6_B	245	Vbeta16 XV19 type II natural killer T cell recept	99.45
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	99.45
3bqu_C	233	3H6 FAB light chain; beta sheet, immune system; 3.	99.45
4f9p_D	254	103.2 anti-BTN3A1 antibody fragment; B7 superfamil	99.45
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	99.45
3nl4_H	215	Antigen binding fragment,immunoglobulin IGG - HEA;	99.45
4gos_A	125	V-SET domain-containing T-cell activation inhibit;	99.45
3nfj_J	245	T cell receptor beta chain; immunoglobulin family,	99.44
3so5_A	112	LIG-3, leucine-rich repeats and immunoglobulin-lik	99.44
2j6e_L	234	IGM, FAB light chain; autoimmune complex human IGM	99.43
2dku_A	103	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	99.43

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A

Probab=100.00  E-value=5.9e-36  Score=222.61  Aligned_cols=222  Identities=26%  Similarity=0.483  Sum_probs=183.5

Q ss_pred             CCCeeEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEE
Q psy7036           7 FAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKV   86 (254)
Q Consensus         7 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C   86 (254)
                      .+|.|...|....+.+|++++|.|.+.+.|.+.++|++++..+....++.+.....     ...|.|.+++..|+|.|+|
T Consensus         4 ~pP~~~~~p~~~~~~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~-----~~~L~i~~v~~~d~G~Y~C   78 (284)
T 2rik_A            4 APPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVEN-----TATLTVLKVTKGDAGQYTC   78 (284)
T ss_dssp             CCCEEEECCCCEEEETTCCEEEEEEEESSSCCEEEEEETTEECCSSSSEEEEEETT-----EEEEEESSCCGGGCEEEEE
T ss_pred             CCCEEEccccceEecCCCcEEEEEEEEcCCCCEEEEEECCEECcCCCcEEEEEcCC-----EEEEEEecCCcccCEEEEE
Confidence            58899999999999999999999999988889999999999987766655443221     2389999999999999999


Q ss_pred             EEEcCCCceEEEEEEEEeccccCCCCCccccC-CCeeeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcC
Q psy7036          87 KAKNKMGEVAASINLNFSREQIDGLAPTFLKK-PSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDK  165 (254)
Q Consensus        87 ~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~-~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~  165 (254)
                      .+.|..|.....+.|.|.      .+|.+... .....+..|+.+.|.|.+.+.|.+.+.|++++..+............
T Consensus        79 ~~~n~~g~~~~~~~l~V~------~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~  152 (284)
T 2rik_A           79 YASNVAGKDSCSAQLGVQ------EPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVE  152 (284)
T ss_dssp             EEEETTEEEEEEEEEEEE------CCCEEEECCCSEEEEETTCCEEEEEEEESSSCCEEEEEETTEECCCSSSEEEEEET
T ss_pred             EEEECCceEEEEEEEEcc------CCCcccccCCCceEecCCceEEEEEEEeeeCCCEEEEEECCEECcCCCcEEEEEcC
Confidence            999998888788888886      34443332 33456788999999999999999999999999988766554443332


Q ss_pred             CCCceeeEEEEccCCCCCceeEEEEEEcCCCcceEEEEEEEecCCCCCCCCCCCCeeecCCccccccCCCCcEEEEEEEe
Q psy7036         166 DGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLV  245 (254)
Q Consensus       166 ~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~l~C~~~  245 (254)
                      ..    ..|.|.+++.+|.|.|+|.+.|..|.....+.|.|..          +|.+...+....+.+|+ .+.|.|.+.
T Consensus       153 ~~----~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~----------~p~~~~~~~~~~~~~g~-~v~l~C~~~  217 (284)
T 2rik_A          153 SV----AVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKE----------PPVFRKKPHPVETLKGA-DVHLECELQ  217 (284)
T ss_dssp             TE----EEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEEEC----------CCBCCSCCCCEEECTTC-CEEEEEECB
T ss_pred             CE----EEEEECCCCcccCEEEEEEEEcCCCceeEEEEEEEec----------CCcceeCCCcceecCCC-eEEEEEEEE
Confidence            21    3799999999999999999999999888888888874          56666667777788899 999999999


Q ss_pred             ccCCCceeC
Q psy7036         246 GEPEPTISW  254 (254)
Q Consensus       246 ~~p~p~~~W  254 (254)
                      |.|.|.++|
T Consensus       218 g~p~~~v~W  226 (284)
T 2rik_A          218 GTPPFQVSW  226 (284)
T ss_dssp             SSSCCEEEE
T ss_pred             ecCCCEEEE
Confidence            999999998

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}

Probab=100.00  E-value=1.2e-34  Score=234.88  Aligned_cols=226  Identities=22%  Similarity=0.454  Sum_probs=187.7

Q ss_pred             CCCCCCCeeEeCCC-ceeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCC
Q psy7036           3 IAEDFAPSFTQKPQ-LRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDA   81 (254)
Q Consensus         3 ~~~~~~p~~~~~~~-~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~   81 (254)
                      +.+..+|.|...+. ...+.+|+.+.|.|.+.|.|.+.++|+|++..+....++.+....     ....|.|.+++.+|+
T Consensus       285 l~V~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~P~p~v~W~k~~~~l~~~~~~~~~~~~-----~~~~L~i~~v~~~D~  359 (570)
T 3b43_A          285 LGVQEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVE-----SVAVLEMYNLSVEDS  359 (570)
T ss_dssp             ECCBCCCEEEECCCSBCCEESSCEEEEEEEEESSSSCEEEEEETTEECCCSSSEEEEEET-----TEEEEEEESCCGGGC
T ss_pred             EEeecCCcccccCCCccEEcCCCcEEEEEEEeeCCCCEEEEeECCEECCCCCcEEEEEEC-----CEEEEEECCCCcccC
Confidence            34556788776554 345789999999999999999999999999998877665544322     123799999999999


Q ss_pred             eEEEEEEEcCCCceEEEEEEEEeccccCCCCCccccCCCeeeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcceE
Q psy7036          82 GLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKF  161 (254)
Q Consensus        82 G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~  161 (254)
                      |.|+|.+.|..|.......|.|.      .+|.+...+....+.+|+.+.|.|.+.|.|.+.+.|+|++..+.......+
T Consensus       360 G~Y~C~a~N~~g~~~~~~~l~V~------~~P~~~~~~~~~~~~~G~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~  433 (570)
T 3b43_A          360 GDYTCEAHNAAGSASSSTSLKVK------EPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKI  433 (570)
T ss_dssp             EEEEEEEEBTTBCCEEEEEECEE------CCCEECSCCCCEEECTTCCEEEEEEEESSSSCCCEEEETTEECCSSSSEEE
T ss_pred             EEEEEEEEeCCCEEEEEEEEEec------CCCeeecCCCceeecCCCEEEEEEEEecCCCCEEEEEECCEECcCCCCEEE
Confidence            99999999999998888888887      466666666677788999999999999999999999999998876555444


Q ss_pred             EEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcceEEEEEEEecCCCCCCCCCCCCeeecCCccccccCCCCcEEEE
Q psy7036         162 SIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIE  241 (254)
Q Consensus       162 ~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~l~  241 (254)
                      .....    ...|.|.++..+|.|.|+|.|.|..|.......|.|..          +|.+...+....+..|+ .+.|.
T Consensus       434 ~~~~~----~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~~----------~P~~~~~~~~~~~~~g~-~~~l~  498 (570)
T 3b43_A          434 MSENF----LTSIHILNVDSADIGEYQCKASNDVGSDTCVGSITLKA----------PPRFVKKLSDISTVVGE-EVQLQ  498 (570)
T ss_dssp             EEETT----EEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEECC----------CCEEEECCCCBCCBTTC-CEEEE
T ss_pred             EEcCC----EEEEEECCCChhhCEEEEEEEEECCCeEEEEEEEEecc----------CCcccccCCCceecCCC-eEEEE
Confidence            32221    13799999999999999999999999988888888864          77888888888889999 99999


Q ss_pred             EEEeccCCCceeC
Q psy7036         242 CRLVGEPEPTISW  254 (254)
Q Consensus       242 C~~~~~p~p~~~W  254 (254)
                      |.+.|.|.|.+.|
T Consensus       499 c~~~g~p~~~v~W  511 (570)
T 3b43_A          499 ATIEGAEPISVAW  511 (570)
T ss_dssp             EEEESCSSCCCEE
T ss_pred             EEEecCCCCEEEE
Confidence            9999999999998

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}

Probab=100.00  E-value=1.2e-34  Score=234.91  Aligned_cols=229  Identities=25%  Similarity=0.450  Sum_probs=185.8

Q ss_pred             CCCCeeEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEE
Q psy7036           6 DFAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYK   85 (254)
Q Consensus         6 ~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~   85 (254)
                      ..+|.|...++...+.+|++++|.|.+.|.|.+.++|||+|..+....++.+...     .....|.|.+++.+|+|.|+
T Consensus         3 ~~pP~f~~~~~~~~v~~G~~v~L~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~-----~~~~~L~I~~v~~~D~G~Y~   77 (570)
T 3b43_A            3 MEPPYFIEPLEHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQFK-----NNVASLVINKVDHSDVGEYT   77 (570)
T ss_dssp             CCCCEEEECCCCEEECTTSCEEEEEEEESSSSCEEEEECSSSBCCCCSSEEEECC-----TTEEEEEESSCCGGGCEEEE
T ss_pred             CCCCcceEECCceEEcCCCEEEEEEEEccCCCCEEEEEECCEEccCCCCEEEEEE-----CCEEEEEEccCChhhCEEEE
Confidence            4589999999999999999999999999999999999999998876655544321     12348999999999999999


Q ss_pred             EEEEcCCCceEEEEEEEEeccccCCCCCccccCCCeeeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcC
Q psy7036          86 VKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDK  165 (254)
Q Consensus        86 C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~  165 (254)
                      |.+.|..|.......+.|...   ..+|.+...........|+.+.|.|.+.+.|++.+.|+|++..+............
T Consensus        78 C~a~N~~g~~~~~~~l~v~~~---~~~p~~~~~~~~~~~~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~~  154 (570)
T 3b43_A           78 CKAENSVGAVASSAVLVIKER---KLPPSFARKLKDVHETLGFPVAFECRINGSEPLQVSWYKDGELLKDDANLQTSFIH  154 (570)
T ss_dssp             EEEEETTEEEEEEEEEEECCC---CCCCEESSCCCCEEEETTSCEEEEEEEESSSSCEEEEEETTEECCCCSSEEEEEET
T ss_pred             EEEEeCCceEEEEEEEEECCC---CCCCcccccCCCeEecCCCeEEEEEEEccCCCCEEEEEECCEECcCCCCEEEEEEC
Confidence            999999988777777776531   13556655566677778999999999999999999999999988765543333222


Q ss_pred             CCCceeeEEEEccCCCCCceeEEEEEEcCCCcceEEEEEEEecCCCCCCCCCCCCeeecCCccccccCCCCcEEEEEEEe
Q psy7036         166 DGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLV  245 (254)
Q Consensus       166 ~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~l~C~~~  245 (254)
                      +.    ..|.|.++..+|.|.|+|.|.|..|....+..+.|...       ..+|.+...|....+.+|+ .+.|.|.+.
T Consensus       155 ~~----~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~-------~~pp~~~~~p~~~~v~~G~-~~~l~C~~~  222 (570)
T 3b43_A          155 NV----ATLQILQTDQSHVGQYNCSASNPLGTASSSAKLTLSEH-------EVPPFFDLKPVSVDLALGE-SGTFKCHVT  222 (570)
T ss_dssp             TE----EEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEECC-------CCCCEEEECCCCBCCBSBS-CEEEEEEEE
T ss_pred             CE----EEEEECcCChHHCEEEEEEEEeCCcEEEEEEEEEEcCC-------CCCCccccCCceeEecCCC-eEEEEEEEE
Confidence            21    37999999999999999999999998877777777632       2367777778777888999 999999999


Q ss_pred             ccCCCceeC
Q psy7036         246 GEPEPTISW  254 (254)
Q Consensus       246 ~~p~p~~~W  254 (254)
                      |.|.|.++|
T Consensus       223 g~p~p~i~W  231 (570)
T 3b43_A          223 GTAPIKITW  231 (570)
T ss_dssp             SSSCCEEEE
T ss_pred             ECCCCEEEE
Confidence            999999998

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}

Probab=100.00  E-value=1.3e-34  Score=217.34  Aligned_cols=232  Identities=22%  Similarity=0.395  Sum_probs=173.9

Q ss_pred             CCCCeeEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCC-CCCeEE
Q psy7036           6 DFAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIE-TDAGLY   84 (254)
Q Consensus         6 ~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~-~d~G~Y   84 (254)
                      ..+|.|...|....+.+|++++|.|.+.|.|.+.++|+++|..+... +........+   ....|.|.+++. .|+|.|
T Consensus         4 ~~~P~~~~~p~~~~v~~G~~v~l~C~~~g~p~~~i~W~k~g~~i~~~-~~~~~~~~~~---~~~~L~i~~~~~~~D~G~Y   79 (304)
T 2yd9_A            4 EEPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQ-RFETIEFDES---AGAVLRIQPLRTPRDENVY   79 (304)
T ss_dssp             CCCCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEC-------CT-TEEEEEETTT---TEEEEEECSCCTTTTCSEE
T ss_pred             ccCCeeeecCCceEecCCCeEEEEEEEEEeCCCeEEEEECCEECCCC-ceEEEEecCC---CceEEEEecccccCCCeEE
Confidence            46899999999999999999999999999999999999999987543 3333222221   123799999998 999999


Q ss_pred             EEEEEcCCCceEEEEEEEEeccccC-CCCCccccCCCeeeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCc-ceEE
Q psy7036          85 KVKAKNKMGEVAASINLNFSREQID-GLAPTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKR-HKFS  162 (254)
Q Consensus        85 ~C~~~~~~~~~~~~~~l~v~~~~~~-~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~-~~~~  162 (254)
                      +|.+.|..|.....+.|.|...... ...|.+...+....+..|+.+.|.|.+.+.|.+.+.|++++..+..... .++.
T Consensus        80 ~C~a~n~~g~~~~~~~l~V~~~~~~p~~~p~i~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~k~~~~~~~~~~~~~~~  159 (304)
T 2yd9_A           80 ECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIK  159 (304)
T ss_dssp             EEEEECSSCEECCEEEEEEECGGGCCTTCCEEEECCCCEEEETTSCEEECCEEECSSCCEEEEEETTEECCGGGGTTSEE
T ss_pred             EEEEECCCCeEEEEEEEEEeccccCCCCCCeeecCCccEEEeCCCeEEEEEECccCCCCeEEEEECCEECcCCCCcceEE
Confidence            9999999988777888888643221 1124555556667788999999999999999999999999988764422 2333


Q ss_pred             EcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcceEE-EEEEEecCCCCCCCCCCCCeeecCCccccccCCCCcEEEE
Q psy7036         163 IDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNAT-ISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIE  241 (254)
Q Consensus       163 ~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~l~  241 (254)
                      ...++     .|.|.+++.+|.|.|+|.+.|..|..... ..+.|..       ...+|.+...+....+.+|+ .+.|.
T Consensus       160 ~~~~~-----~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~v~~-------~~~~P~~~~~~~~~~v~~G~-~v~l~  226 (304)
T 2yd9_A          160 QLRSG-----ALQIESSEETDQGKYECVATNSAGVRYSSPANLYVRV-------QNVAPRFSILPMSHEIMPGG-NVNIT  226 (304)
T ss_dssp             ECTTS-----CEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC-------CCEEEEEEECCCCBCCCTTC-CEEEE
T ss_pred             eCCCe-----EEEEccCCcccCEEEEEEEEeCCCCEEeccEEEEEEe-------eccCCcEEecCCceEEcCCC-eEEEE
Confidence            33333     79999999999999999999998865422 4444442       11357777777777888999 99999


Q ss_pred             EEEeccCCCceeC
Q psy7036         242 CRLVGEPEPTISW  254 (254)
Q Consensus       242 C~~~~~p~p~~~W  254 (254)
                      |.+.|.|.|.++|
T Consensus       227 C~~~g~p~p~v~W  239 (304)
T 2yd9_A          227 CVAVGSPMPYVKW  239 (304)
T ss_dssp             EEEEEESCCEEEE
T ss_pred             EEEeeeCCCEEEE
Confidence            9999999999998

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A

Probab=100.00  E-value=8.2e-33  Score=206.34  Aligned_cols=221  Identities=23%  Similarity=0.408  Sum_probs=169.2

Q ss_pred             CCeeEeCCCceeecCCCeEEEEEEEeeCC-CCceEEEe-CCEEeeeCC-cceEEEeecCCcceEEEEEEeccCCCCCeEE
Q psy7036           8 APSFTQKPQLRQEDEGNRLIFECQLLCNP-KPDIVWFR-GETQLSEDT-RTVMKTTPIGTNKYLVALELDDVIETDAGLY   84 (254)
Q Consensus         8 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~-~~~v~W~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y   84 (254)
                      +|.|...|....+.+|++++|.|.+.+.+ .+.+.|++ +|..+.... +..+....    ...+.|.|.+++..|+|.|
T Consensus         2 ~~~v~~~p~~~~v~~G~~v~l~C~~~~~~~~~~i~W~~~~g~~~~~~~~~~~~~~~~----~~~~~L~i~~~~~~D~G~Y   77 (291)
T 1qz1_A            2 VLQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWND----DDSSTLTIYNANIDDAGIY   77 (291)
T ss_dssp             CCCEEEESSSEEEETTCCEEEEEEESSCCSCCEEEEECTTSCBCCSSCSSEEEEEEE----TTEEEEEECSCCGGGCEEE
T ss_pred             CcceEecCCCceEeCCCeEEEEEEeCCCCCCcEeEEECCCCeECccCCceEEEEEcC----CCeEEEEEecCCCCCCEEE
Confidence            57888999999999999999999998876 68999999 777665432 22222111    1234899999999999999


Q ss_pred             EEEEEcCCCc-eEEEEEEEEeccccCCCCCccccCCCeeeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEE
Q psy7036          85 KVKAKNKMGE-VAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSI  163 (254)
Q Consensus        85 ~C~~~~~~~~-~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~  163 (254)
                      +|.+.|..+. ....+.|.|.      .+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+......++..
T Consensus        78 ~C~~~n~~g~~~~~~~~l~v~------~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~  151 (291)
T 1qz1_A           78 KCVVTAEDGTQSEATVNVKIF------QKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIV  151 (291)
T ss_dssp             EEEEECTTSCEEEEEEEEEEE------CCSEEEECCSSEEEETTSCEEECCEEECSSCCEEEEEETTSCSSTTCCTTEEE
T ss_pred             EEEEEcCCCCeeEEEEEEEee------ccccccCCCCcccccCCCeEEEEEEeccCCCCEEEEEECCEEcccCCCceEEE
Confidence            9999998854 4556777775      34555555566778899999999999999999999999998876554444444


Q ss_pred             cCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcc--eEEEEEEEecCCCCCCCCCCCCeeecCC--ccccccCCCCcEE
Q psy7036         164 DKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGES--NATISLNFDSDDAPVPGEGTKPVFTERP--VTKQSDDDLNDIV  239 (254)
Q Consensus       164 ~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~p~~~~~~--~~~~~~~g~~~~~  239 (254)
                      ..++     .|.|.+++.+|.|.|+|.+.|..+..  ...+.+.|..          +|.+...+  ....+.+|+ .+.
T Consensus       152 ~~~~-----~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~l~v~~----------~p~~~~~~~~~~~~~~~g~-~v~  215 (291)
T 1qz1_A          152 LSNN-----YLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVIVNV----------PPTVQARQSIVNATANLGQ-SVT  215 (291)
T ss_dssp             CTTS-----CEEETTCCGGGCEEEEEEEEEGGGTEEEEEEEEEEEEE----------EEEEEESCSEEEEETTSCC-CEE
T ss_pred             ccCC-----cEEEccCccccCeEEEEEEEecCCCceeeEEEEEEEec----------CCcccccccccccccccCc-eEE
Confidence            4444     69999999999999999999876443  3455555553          45554432  344677898 999


Q ss_pred             EEEEEeccCCCceeC
Q psy7036         240 IECRLVGEPEPTISW  254 (254)
Q Consensus       240 l~C~~~~~p~p~~~W  254 (254)
                      |.|.+.|.|.|.++|
T Consensus       216 l~C~~~g~p~p~i~W  230 (291)
T 1qz1_A          216 LVCDADGFPEPTMSW  230 (291)
T ss_dssp             EEEEEEEESCCEEEE
T ss_pred             EEEEEEEeCCCcEEE
Confidence            999999999999998

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}

Probab=100.00  E-value=4e-32  Score=202.63  Aligned_cols=220  Identities=22%  Similarity=0.426  Sum_probs=165.4

Q ss_pred             CCCeeEeCCCceeecCCCeEEEEEEEeeCCCCceEEEe-CCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEE
Q psy7036           7 FAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFR-GETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYK   85 (254)
Q Consensus         7 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~   85 (254)
                      .+|.|...+....+.+|+.++|.|.+.+.|. .+.|++ ++..+....+..+...  +   ....|.|.+++..|+|.|+
T Consensus         3 ~~p~v~~~~~~~~v~~G~~v~l~C~~~~~p~-~v~W~~~~g~~~~~~~~~~~~~~--~---~~~~L~i~~~~~~D~G~Y~   76 (291)
T 2wim_A            3 ALLQVTISLSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIISTQRVVVQKE--G---VRSRLTIYNANIEDAGIYR   76 (291)
T ss_dssp             CCCEEEESCSEEEEETTCCEEEEEEEESCCS-EEECBCTTCCBCCCBTTEEEEEE--T---TEEEEEECSCCGGGCEEEE
T ss_pred             CCceEEEeccceEecCCCcEEEEEEEeCCCC-ceEEECCCCcCccCCCcEEEecC--C---CEEEEEEccCCcccCEEEE
Confidence            4789999999999999999999999988764 899999 6776665555444322  1   2348999999999999999


Q ss_pred             EEEEcCCCce-EEEEEEEEeccccCCCCCccccCCCeeeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEEc
Q psy7036          86 VKAKNKMGEV-AASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSID  164 (254)
Q Consensus        86 C~~~~~~~~~-~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~  164 (254)
                      |.+.+..|.. ...+.|.|.      .++.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+......++...
T Consensus        77 C~~~n~~g~~~~~~~~l~v~------~~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~  150 (291)
T 2wim_A           77 CQATDAKGQTQEATVVLEIY------QKLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAML  150 (291)
T ss_dssp             EEEECSSSCEEEEEEEEEEE------CCCBCCSCCCSEEEETTSCEEECCCCBCSSCCEEEEECC----CBCCCSSEEEC
T ss_pred             EEEecccCceEEEEEEEEec------CCcceEeCCCChhhcCCCCEEEEEEEccCCCCEEEEEECCccccccCCceEEEc
Confidence            9999988765 346667765      344444455566788999999999999999999999999988765444444444


Q ss_pred             CCCCceeeEEEEccCCCCCceeEEEEEEcCCCcc--eEEEEEEEecCCCCCCCCCCCCeeecCCc--cccccCCCCcEEE
Q psy7036         165 KDGHSYFASLEIIDVTIEDAGKYKVTAKNELGES--NATISLNFDSDDAPVPGEGTKPVFTERPV--TKQSDDDLNDIVI  240 (254)
Q Consensus       165 ~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~p~~~~~~~--~~~~~~g~~~~~l  240 (254)
                      .++     .|.|.++..+|.|.|+|.+.|..+..  ...+.+.+..          +|.+...+.  ...+.+|+ .+.|
T Consensus       151 ~~~-----~L~i~~v~~~d~G~Y~C~~~n~~~~~~~~~~~~~~v~~----------~p~~~~~~~~~~~~~~~g~-~~~l  214 (291)
T 2wim_A          151 ANN-----NLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNV----------PPAISMPQKSFNATAERGE-EMTF  214 (291)
T ss_dssp             TTS-----CEEETTCCGGGCEEEEEEEEETTTTEEEEEEEEEEEEB----------CCCCBCSCSEEECCSSSCC-EEEE
T ss_pred             cCC-----CEEEEecchhhCEEEEEEEEECCCCeeEEeeEEEEecc----------CCccccCcccccceecCCC-eEEE
Confidence            444     69999999999999999999987543  3445555553          333333322  44677888 9999


Q ss_pred             EEEEeccCCCceeC
Q psy7036         241 ECRLVGEPEPTISW  254 (254)
Q Consensus       241 ~C~~~~~p~p~~~W  254 (254)
                      .|.+.|.|.|.++|
T Consensus       215 ~C~~~g~p~p~v~W  228 (291)
T 2wim_A          215 SCRASGSPEPAISW  228 (291)
T ss_dssp             ECBCCCBSCCEEEE
T ss_pred             EEEeecCCCCeEEE
Confidence            99999999999998

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}

Probab=100.00  E-value=1e-32  Score=214.83  Aligned_cols=227  Identities=22%  Similarity=0.406  Sum_probs=175.4

Q ss_pred             CCCCCeeEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCc-ceEEEeecCCcceEEEEEEeccCCCCCeE
Q psy7036           5 EDFAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTR-TVMKTTPIGTNKYLVALELDDVIETDAGL   83 (254)
Q Consensus         5 ~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~i~~~~~~d~G~   83 (254)
                      +..+|.+...+....+.+|+++.|.|.+.+.|.+.+.|++++..+..... ........+      .|.|.+++..|+|.
T Consensus       118 v~~p~~~~~~~~~~~~~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~------~L~i~~~~~~d~G~  191 (403)
T 3laf_A          118 VAGPLRFLSQTESITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSRVVVLPSG------ALQISRLQPGDSGV  191 (403)
T ss_dssp             ECCCCEECSCCCCEEEETTSCEEECCCEECSSCCEEEEEESSSBCCCCTTCCSEEECTTS------CEEECSCCGGGCEE
T ss_pred             ecCCCccccCCCcEEEEcCCeEEEEEEEcccCCCeEEEEECCEeccccCCceEEEEcCCc------eEEEcccccccCEE
Confidence            34567777788888899999999999999889999999999987743222 122222122      69999999999999


Q ss_pred             EEEEEEcCCCce-EEEEEEEEeccccCCCCCccccCCCeeeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEE
Q psy7036          84 YKVKAKNKMGEV-AASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFS  162 (254)
Q Consensus        84 Y~C~~~~~~~~~-~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~  162 (254)
                      |+|.+.|..+.. .....+.|...+....++.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+........ 
T Consensus       192 Y~C~~~n~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~-  270 (403)
T 3laf_A          192 YRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKDAVLECCVSGYPPPSFTWLRGEEVIQLRSKKYS-  270 (403)
T ss_dssp             EEEEEECSSCCCBCCCEEEEEECCCCCCEEEEEEECCCCEEEETTSCEEECCEEEEESCCEEEEEETTEECCCSSSSEE-
T ss_pred             EEEEEEcCCCceeccceeEEEecCCCcccCceEecCCCceEecCCCcEEEEEEcCCCCCCeEEEEECCeeccCCCceEE-
Confidence            999999987653 345666665322211112233445556778999999999999999999999999988765443322 


Q ss_pred             EcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcceEEEEEEEecCCCCCCCCCCCCeeecCCccccccCCCCcEEEEE
Q psy7036         163 IDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIEC  242 (254)
Q Consensus       163 ~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~l~C  242 (254)
                      ...+.     .|.|.++..+|.|.|+|.+.|..|.....+.+.|..          +|.+...+....+.+|+ .+.|.|
T Consensus       271 ~~~~~-----~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~----------~p~~~~~~~~~~~~~g~-~v~l~C  334 (403)
T 3laf_A          271 LLGGS-----NLLISNVTDDDSGTYTCVVTYKNENISASAELTVLV----------PPWFLNHPSNLYAYESM-DIEFEC  334 (403)
T ss_dssp             EETTT-----EEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEE----------EEEEEECCCCEECCTTC-CEEECC
T ss_pred             ECCcc-----EEEEeCCCHHHCEEEEEEEEcCCCceEEEEEEEEEC----------CCcEeecCcceEEecCC-eEEEEE
Confidence            22232     799999999999999999999999888888888874          67777777777888999 999999


Q ss_pred             EEeccCCCceeC
Q psy7036         243 RLVGEPEPTISW  254 (254)
Q Consensus       243 ~~~~~p~p~~~W  254 (254)
                      .+.|.|.|.++|
T Consensus       335 ~~~g~p~p~v~W  346 (403)
T 3laf_A          335 AVSGKPVPTVNW  346 (403)
T ss_dssp             EEEEESCCEEEE
T ss_pred             EEeeccCCEEEE
Confidence            999999999998

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*

Probab=100.00  E-value=4e-31  Score=212.50  Aligned_cols=224  Identities=16%  Similarity=0.236  Sum_probs=171.5

Q ss_pred             CCCCeeEeCCCceeecCCCeEEEEEEEeeCCCCc-eEEEeCCEEe--eeCCcceEEEeecCCcceEEEEEEeccCCCCCe
Q psy7036           6 DFAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPD-IVWFRGETQL--SEDTRTVMKTTPIGTNKYLVALELDDVIETDAG   82 (254)
Q Consensus         6 ~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~-v~W~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G   82 (254)
                      ..+|.|...+....+.+|++++|.|.+.+.|.+. ++|++++..+  .....  ..............|.|.+++..|+|
T Consensus       209 ~~~p~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~~i~W~~~~~~~~~~~~~~--~~~~~~~~~~~~~~L~I~~~~~~D~G  286 (524)
T 2ec8_A          209 KAVPVVSVSKASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYN--SWHHGDFNYERQATLTISSARVNDSG  286 (524)
T ss_dssp             CSCCEEECSCSEEEEETTSCEEEEEEEEESSTTCEEEEEETTCSCCCCEEEE--EEECSSSCEEEEEEEEESSCCTTTCE
T ss_pred             CCCCcEEecCCcceEEcCCcEEEEEEEecCCCcEEEEEEeCCCCCccccccc--cccccCCccceEEEEEECCCCHHHCE
Confidence            4688998888888999999999999999988876 9999999873  22211  11111112233458999999999999


Q ss_pred             EEEEEEEcCCCceEEEEEEEEeccccCCCCCcccc---CCCeeeecCCCeEEEEEEEeeCCCCe-EEEEECCEecccCCc
Q psy7036          83 LYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLK---KPSIRQEDDGKRLLFECRIQADPAPT-VIWSHSGVQVKEDKR  158 (254)
Q Consensus        83 ~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~---~~~~~~~~~g~~~~l~C~~~~~~~~~-~~W~~~~~~~~~~~~  158 (254)
                      .|+|.+.|..|.....+.|.|..      +|.+..   ......+..|+.+.|.|.+.+.|.+. +.|++++..+.....
T Consensus       287 ~Y~C~a~n~~g~~~~~~~l~V~~------~p~~~~~~~~~~~~~v~~G~~v~l~C~~~g~P~p~~v~W~k~g~~~~~~~~  360 (524)
T 2ec8_A          287 VFMCYANNTFGSANVTTTLEVVD------KGFINIFPMINTTVFVNDGENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWE  360 (524)
T ss_dssp             EEEEEEECSSCEEEEEEEEEEES------SCEEEEEESSCSEEEECTTCCEEEEEEEEEESCCCEEEEESSSCBCSSSBC
T ss_pred             EEEEEEEecCCceEEEEEEEEec------cCceEeecCCCceEEEcCCCcEEEEEEEeecCCCcEEEEEECCeeccCCcc
Confidence            99999999999888888888873      333332   22357788999999999999999998 999999988765543


Q ss_pred             ceEEEcCC-CCceeeEEEEccCCCCCceeEEEEEEcCCCcceEEEEEEEecCCCCCCCCCCCCeeecCCccccccCCCCc
Q psy7036         159 HKFSIDKD-GHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLND  237 (254)
Q Consensus       159 ~~~~~~~~-~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~  237 (254)
                      .......+ .....+.|.|.+++.+|.|.|+|.|.|..|....++.|.|..          +|.+...+.   ..+|   
T Consensus       361 ~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~----------~P~i~~~~~---~~~g---  424 (524)
T 2ec8_A          361 DYPKSENESNIRYVSELHLTRLKGTEGGTYTFLVSNSDVNAAIAFNVYVNT----------KPEILTYDR---LVNG---  424 (524)
T ss_dssp             CEESCCSSSCCEEEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEECE----------EEEEEEEEC---CSSS---
T ss_pred             ceeEEccCCCceeEEEEEEeecCcccCeEEEEEEEecCceEEEEEEEEEec----------CCeEeeccc---CcCc---
Confidence            22212111 122446899999999999999999999999988888888864          566665443   2222   


Q ss_pred             EEEEEEEeccCCCceeC
Q psy7036         238 IVIECRLVGEPEPTISW  254 (254)
Q Consensus       238 ~~l~C~~~~~p~p~~~W  254 (254)
                       .|.|.+.|+|.|.++|
T Consensus       425 -~l~C~~~g~P~p~i~W  440 (524)
T 2ec8_A          425 -MLQCVAAGFPEPTIDW  440 (524)
T ss_dssp             -CEEEEEEEESCCEEEC
T ss_pred             -EEEEEEEeecCCEEEE
Confidence             9999999999999999

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}

Probab=100.00  E-value=2.3e-33  Score=211.78  Aligned_cols=234  Identities=20%  Similarity=0.346  Sum_probs=163.2

Q ss_pred             CCCCCCCCeeEeCCCceeecCCCeEEEEEEEeeC-CCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCC
Q psy7036           2 GIAEDFAPSFTQKPQLRQEDEGNRLIFECQLLCN-PKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETD   80 (254)
Q Consensus         2 ~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~-~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d   80 (254)
                      |+.+-.+|.|...+ ...+.+|++++|.|.+.+. |.+.+.|+|+|..+....++.+.       .....|.|.+++..|
T Consensus         1 gi~~~~~P~~~~~~-~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~-------~~~~~L~i~~~~~~d   72 (317)
T 2y25_A            1 GIDPFTGPHFVEYL-SWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFK-------DGICTLLITEFSKKD   72 (317)
T ss_dssp             -CCSSSCCEEEEEE-EEEEETTTEEEEEEEEESCCTTCEEEEEETTEEECCSCC------------CCEEEEETTCCSTT
T ss_pred             CCCccCCCcEeeee-eEEECCCCeEEEEEEEcCCCCCCEEEEEECCeEcCCCCcEEEE-------CCeEEEEEccCCccc
Confidence            45666789998554 5889999999999999876 77899999999998766554432       112389999999999


Q ss_pred             CeEEEEEEEcCCCceEEEEEEEEeccccCCCCCccccCCCeeeecCCCeEEEEEEEee----------CCCCeEEEEECC
Q psy7036          81 AGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQA----------DPAPTVIWSHSG  150 (254)
Q Consensus        81 ~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~----------~~~~~~~W~~~~  150 (254)
                      +|.|+|.+.|..+.....+.|.|..      ++.+........+..|+.+.|.|.+.+          .|.+.+.|++++
T Consensus        73 ~G~Y~C~~~n~~g~~~~~~~l~v~~------~~~~~~~~~~~~~~~g~~~~l~c~~~~~~l~c~~~~~~p~~~i~W~~~~  146 (317)
T 2y25_A           73 AGIYEVILKDDRGKDKSRLKLVDEA------FKELMMEVCKKIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNG  146 (317)
T ss_dssp             CSCEEEEEESSSCEEEEEECCSTHH------HHHHHHHHHHHHHTCBCCCEEEECSSEEEEEEEBSSCCSSCEEEEEESS
T ss_pred             CeEEEEEEECCCCcEEEEEEEEEec------CccccccCCceecccCCCeEEEeeccccEEEEEeccCCCCcEEEEEECC
Confidence            9999999999888766665555432      111111111223345556666666554          688899999999


Q ss_pred             EecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcceEEEEEEEecC-----------CCCCCCCCCC
Q psy7036         151 VQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFDSD-----------DAPVPGEGTK  219 (254)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~v~~~-----------~~~~~~~~~~  219 (254)
                      ..+.............    ...|.|.+++.+|.|.|+|.+.|..|....++.+.+...           .+.......+
T Consensus       147 ~~~~~~~~~~~~~~~~----~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~p  222 (317)
T 2y25_A          147 SAIRYSDRVKTGVTGE----QIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRA  222 (317)
T ss_dssp             SBCCCCSSEEEEECSS----EEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEECHHHHHHHHHHHHHHHHHHHHTTTSC
T ss_pred             EECCCCCCeEEeccCC----EEEEEECcCCcccCeeEEEEEEeCCceEEEEEEEeeeeccccchhhcccCCcccCcCCCC
Confidence            8887655444333222    236999999999999999999999888877777665310           0000001112


Q ss_pred             CeeecCCccccccCCCCcEEEEEEEeccCCCceeC
Q psy7036         220 PVFTERPVTKQSDDDLNDIVIECRLVGEPEPTISW  254 (254)
Q Consensus       220 p~~~~~~~~~~~~~g~~~~~l~C~~~~~p~p~~~W  254 (254)
                      +.+...+....+.+|+ .+.|.|.+.|+|.|.+.|
T Consensus       223 ~~~~~~~~~~~v~~g~-~~~l~C~~~g~p~p~i~W  256 (317)
T 2y25_A          223 RVLGGLPDVVTIQEGK-ALNLTCNVWGDPPPEVSW  256 (317)
T ss_dssp             EEEEBCCSEEEEETTS-BBCEEEEEECSSCCEEEE
T ss_pred             cccccCCccEEEEcCC-EEEEEEEEecCCCCEEEE
Confidence            3333345666788899 999999999999999998

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A

Probab=100.00  E-value=5.1e-31  Score=185.17  Aligned_cols=189  Identities=26%  Similarity=0.428  Sum_probs=150.8

Q ss_pred             CCCCeeEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCC--cceEEEeecCCcceEEEEEEeccCCCCCeE
Q psy7036           6 DFAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDT--RTVMKTTPIGTNKYLVALELDDVIETDAGL   83 (254)
Q Consensus         6 ~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~   83 (254)
                      ..+|.|...+....+.+|++++|.|.+.+.|.+.+.|++++..+....  +......  +   ....|.|.+++..|+|.
T Consensus         3 ~~~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~--~---~~~~L~i~~~~~~d~G~   77 (194)
T 2a38_A            3 TQAPTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFS--D---GRAKLTIPAVTKANSGR   77 (194)
T ss_dssp             CEEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEESSSBCCTTTSTTCEEEEE--T---TEEEEEESSCCGGGCEE
T ss_pred             CCCCeEEccCCceEEECCCEEEEEEEEEecCCCEEEEEECCEEcccccCCceEEEeC--C---CEEEEEECCCCcccCEE
Confidence            347899999999999999999999999998999999999998876553  2333221  1   23489999999999999


Q ss_pred             EEEEEEcCCCceEEEEEEEEeccccCCCCCccccCCCeeeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEE
Q psy7036          84 YKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSI  163 (254)
Q Consensus        84 Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~  163 (254)
                      |+|.+.+..+.......|.|...   ..+|.+...+....+..|+.+.|.|.+.+.|.+.+.|++++..+..........
T Consensus        78 Y~C~~~n~~~~~~~~~~l~v~~~---~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~  154 (194)
T 2a38_A           78 YSLKATNGSGQATSTAELLVKAE---TAPPNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQ  154 (194)
T ss_dssp             EEEEEEETTEEEEEEEEEEEECC---CEEEEEEECCCCEEECTTEEEEEEEEEEEESCCEEEEEETTEECCCSSSEEEEE
T ss_pred             EEEEEEcCCceEeEEEEEEEccC---CCCCEEEeCCccEEEcCCCEEEEEEEEEEecCCeEEEEECCEECCCCCcEEEEE
Confidence            99999998888777777777631   134444555556778899999999999999999999999999887655544433


Q ss_pred             cCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcceEEEEEEE
Q psy7036         164 DKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNF  206 (254)
Q Consensus       164 ~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~v  206 (254)
                      ...    ...|.|.++..+|.|.|+|.|.|..|....++.|.|
T Consensus       155 ~~~----~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V  193 (194)
T 2a38_A          155 EGD----LYSLLIAEAYPEDSGTYSVNATNSVGRATSTAELLV  193 (194)
T ss_dssp             ETT----EEEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             cCC----EEEEEECCCChhcCeEEEEEEEeCCCceEEEEEEEE
Confidence            222    137999999999999999999999998888887776

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A

Probab=99.98  E-value=2.8e-30  Score=181.89  Aligned_cols=192  Identities=22%  Similarity=0.379  Sum_probs=150.6

Q ss_pred             CCCeeEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCC-cceEEEeecCCcceEEEEEEeccCCCCCeEEE
Q psy7036           7 FAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDT-RTVMKTTPIGTNKYLVALELDDVIETDAGLYK   85 (254)
Q Consensus         7 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~   85 (254)
                      .+|.|...+....+.+|++++|.|.+.+.|.+.+.|++++..+.... ++.+... .   ...+.|.|.+++..|+|.|+
T Consensus         3 ~~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~-~---~~~~~L~i~~~~~~d~G~Y~   78 (197)
T 2j8h_A            3 MAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEF-K---GGYHQLIIASVTDDDATVYQ   78 (197)
T ss_dssp             CCCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEETTEECCCCSSSEEEEEE-T---TTEEEEEECSCCGGGCSEEE
T ss_pred             CCCEEEEcCCccEEcCCCEEEEEEEEeecCCCEEEEEECCEECccCCCcEEEEEc-C---CCEEEEEECcCCHHhCEEEE
Confidence            58999999999999999999999999989999999999999886543 3332221 1   12347999999999999999


Q ss_pred             EEEEcCCCceEEEEEEEEeccccCCCCCccccCCCeeeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcC
Q psy7036          86 VKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDK  165 (254)
Q Consensus        86 C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~  165 (254)
                      |.+.|..+.....+.|.|...+.... +.....+....+..|+.+.|.|.+.+.|.+.+.|++++..+.......+....
T Consensus        79 C~~~n~~g~~~~~~~l~V~~~p~~~~-~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~  157 (197)
T 2j8h_A           79 VRATNQGGSVSGTASLEVEVPAKIHL-PKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTR  157 (197)
T ss_dssp             EEEEETTEEEEEEEEEEEEEEEEECC-SSCBTTBEEEEEETTCCCEEEEEEEEESCCEEEEEESSCEECSSSSCEEEECS
T ss_pred             EEEEECCCceeEEEEEEEcCCCcCCC-CccccccCeEEEeCCCEEEEEEEEEecCCCcEEEEECCEEeecCCCEEEEEcC
Confidence            99999988877888888864333222 22222334566788999999999999999999999999988755544443322


Q ss_pred             CCCceeeEEEEcc-CCCCCceeEEEEEEcCCCcceEEEEEEEe
Q psy7036         166 DGHSYFASLEIID-VTIEDAGKYKVTAKNELGESNATISLNFD  207 (254)
Q Consensus       166 ~~~~~~~~l~i~~-~~~~d~G~y~C~~~~~~~~~~~~~~~~v~  207 (254)
                      .    ...|.|.+ +..+|.|.|+|.|.|..|....++.|.|.
T Consensus       158 ~----~~~L~i~~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~  196 (197)
T 2j8h_A          158 S----FTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVA  196 (197)
T ss_dssp             S----EEEEECTTCCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             C----ceEEEEeCCCCcccCEeEEEEEEeCCCcEeEEEEEEEe
Confidence            2    23799999 99999999999999999998888888774

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}

Probab=99.98  E-value=5.4e-32  Score=206.18  Aligned_cols=229  Identities=18%  Similarity=0.267  Sum_probs=171.7

Q ss_pred             CCCCCCeeEeCCCceeecCCCeEEEEEEEe-------eCCCCceEEEeCCEEe--eeCCcceEEEeecCCcceEEEEEEe
Q psy7036           4 AEDFAPSFTQKPQLRQEDEGNRLIFECQLL-------CNPKPDIVWFRGETQL--SEDTRTVMKTTPIGTNKYLVALELD   74 (254)
Q Consensus         4 ~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~-------~~~~~~v~W~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~i~   74 (254)
                      .....|.|...+....+.+|+++.|.|.+.       +.|.+.+.|++++..+  ......++.. ..+      .|.|.
T Consensus        14 ~~~~~p~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~-~~~------~L~i~   86 (339)
T 3o4o_C           14 AARSCRFRGRHYKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGEEETRMWA-QDG------ALWLL   86 (339)
T ss_dssp             ----CEEEEECSCCEEEETTBCCEEECTTSCSSCCSTTSSCCBCCCEESSCCSCCSCCSSSCEEE-ETT------EEEES
T ss_pred             cchhhHhhCcCceEEEEECCccEEEEeccccccccccCCCCceEEEEECCCCcccCccccccEEe-eCC------eEEEC
Confidence            345689999999999999999999999997       7888999999999873  3322333322 111      79999


Q ss_pred             ccCCCCCeEEEEEEEcCCCceEEEEEEEEeccccCCCCCccccCCCeeeecCCCeEEEEEE-----EeeCCCCeEEEEEC
Q psy7036          75 DVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECR-----IQADPAPTVIWSHS  149 (254)
Q Consensus        75 ~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~-----~~~~~~~~~~W~~~  149 (254)
                      +++..|+|.|+|.+.|..+.....+.|.|......    ..........+..|+.+.|.|.     +.+.|.+.+.|+++
T Consensus        87 ~v~~~D~G~Y~C~~~n~~g~~~~~~~l~V~~~~~~----~~~~~~~~~~~~~g~~v~l~C~~~~~~~~g~p~~~v~W~k~  162 (339)
T 3o4o_C           87 PALQEDSGTYVCTTRNASYCDKMSIELRVFENTDA----FLPFISYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKD  162 (339)
T ss_dssp             SBCTTCCEEEECCEEETTEEEEEEEEEEEECSCGG----GHHHHCEEEEEETTSCEEEECCSCTTTCCSSSCCCBCCEES
T ss_pred             CCCcccCEEEEEEEECCcceEEEEEEEEEEcCCCc----cccccccceEEECCCCEEEEecCCcccccCCCCceEEEecC
Confidence            99999999999999998888888888888642110    0011122346778999999999     77888999999999


Q ss_pred             CEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCc----ceEEEEEEEecCCCCCCCCCCCCeeecC
Q psy7036         150 GVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGE----SNATISLNFDSDDAPVPGEGTKPVFTER  225 (254)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~----~~~~~~~~v~~~~~~~~~~~~~p~~~~~  225 (254)
                      +..+...... +....+.    ..|.|.+++.+|.|.|+|.+.|..+.    ....+.|.|.....     ..+|.+...
T Consensus       163 g~~~~~~~~~-~~~~~~~----~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~~~~~l~V~~~~~-----~~~P~i~~~  232 (339)
T 3o4o_C          163 SLLLDKDNEK-FLSVRGT----THLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKKKE-----ETIPVIISP  232 (339)
T ss_dssp             SCBCCTTCSS-EEECTTS----SEEEESSCCGGGCEEEEEEEECCBTTBCCEEEEEEEEEEECCCC-----CCCCEECCC
T ss_pred             CeeCCCCCce-eEEcCCc----ceEEEcccCHhhCeEEEEEEEECCCCeEEEEEEEEEEEEEcCCC-----CCCCEEecC
Confidence            9887654332 2232222    17999999999999999999998773    45567777764321     135677777


Q ss_pred             CccccccCCCCcEEEEEEE---eccC-CCceeC
Q psy7036         226 PVTKQSDDDLNDIVIECRL---VGEP-EPTISW  254 (254)
Q Consensus       226 ~~~~~~~~g~~~~~l~C~~---~~~p-~p~~~W  254 (254)
                      +....+.+|+ .+.|.|.+   .|.| .+.++|
T Consensus       233 ~~~~~v~~G~-~v~L~C~~~~~~g~P~~~~v~W  264 (339)
T 3o4o_C          233 LKTISASLGS-RLTIPCKVFLGTGTPLTTMLWW  264 (339)
T ss_dssp             SCCCCCCCCS-CCCCCCCEEESSSCCSSCEEEE
T ss_pred             CceeEeccCC-CEEEEEEEECCCCCCCCceEEE
Confidence            7777888999 99999999   8998 778888

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.97  E-value=1.2e-32  Score=209.41  Aligned_cols=233  Identities=18%  Similarity=0.361  Sum_probs=96.7

Q ss_pred             CCCCCCCCeeEeCCCceeecCCCeEEEEEEEeeC-CCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCC
Q psy7036           2 GIAEDFAPSFTQKPQLRQEDEGNRLIFECQLLCN-PKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETD   80 (254)
Q Consensus         2 ~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~-~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d   80 (254)
                      |-....++-....+....+.+|++++|.|.+.+. |.+.+.|+|+|..+....++...         ...|.|.+++..|
T Consensus         2 g~~~~~p~p~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~~---------~~~L~i~~v~~~D   72 (334)
T 1ry7_B            2 GRAAEVPGPEPGQQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPSERVLVG---------PQRLQVLNASHED   72 (334)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CccccCCCCCCCCcCcEEEecCCcEEEEeeCCCCCCCcceEEEECCeeCCCcccEEec---------cceEEEeeccccc
Confidence            3333433333344778889999999999999875 67899999999988665444321         1279999999999


Q ss_pred             CeEEEEEEEcCCCceEEEEEEEEeccccCC----------------CCCcccc----CCCeeeecCCCeEEEEEEEeeCC
Q psy7036          81 AGLYKVKAKNKMGEVAASINLNFSREQIDG----------------LAPTFLK----KPSIRQEDDGKRLLFECRIQADP  140 (254)
Q Consensus        81 ~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~----------------~~~~~~~----~~~~~~~~~g~~~~l~C~~~~~~  140 (254)
                      +|.|+|.+.|. +.....+.|.|.......                .+|.+..    ......+..|+.+.|.|.+.+.|
T Consensus        73 ~G~Y~C~a~n~-~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~~~~~~~v~~g~~v~l~C~~~g~p  151 (334)
T 1ry7_B           73 SGAYSCRQRLT-QRVLCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNP  151 (334)
T ss_dssp             -----------------------------------------------CCCCSCCTTCCCCEEEEETTCCEEEECCCCCSS
T ss_pred             CEEEEEEEEeC-CeEEEEEEEEEeccCccccccccccccccccccCCCCEEeccccccceeEEecCCCcEEEEEEccCCC
Confidence            99999999988 766667777775422110                1232221    12235677899999999999999


Q ss_pred             CCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcceEEEEEEEecCCCCCCCCCCCC
Q psy7036         141 APTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKP  220 (254)
Q Consensus       141 ~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~p  220 (254)
                      .+.+.|++++..+.............+.   ..|.|.+++.+|.|.|+|.+.|..|.....+.+.|....+      .+|
T Consensus       152 ~~~v~W~~~~~~~~~~~~~~~~~~~~~~---~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~------~~p  222 (334)
T 1ry7_B          152 TPSISWLKNGREFRGEHRIGGIKLRHQQ---WSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSP------HRP  222 (334)
T ss_dssp             CCEEECCBTTBCCCTTSSTTCCCCCTTT---TEEEECSCCGGGCCCEEEEEEETTEEEEEEEEEEEECCCC------SSC
T ss_pred             CCeEEEEECCEECcccccccceecccce---EEEEECCCCcccCEEEEEEEEeCCCCEEEEEEEEEecCCC------CCC
Confidence            9999999999887654332111111111   2799999999999999999999998888888888875322      133


Q ss_pred             eeec-CCccccccCCCCcEEEEEEEeccCCCceeC
Q psy7036         221 VFTE-RPVTKQSDDDLNDIVIECRLVGEPEPTISW  254 (254)
Q Consensus       221 ~~~~-~~~~~~~~~g~~~~~l~C~~~~~p~p~~~W  254 (254)
                      .+.. .+....+.+|+ .+.|.|.+.|+|.|.++|
T Consensus       223 ~~~~~~~~~~~~~~G~-~v~l~C~~~g~p~p~v~W  256 (334)
T 1ry7_B          223 ILQAGLPANQTAVLGS-DVEFHCKVYSDAQPHIQW  256 (334)
T ss_dssp             BCCTTCSCCEEEESSC-CEEECCCCBCSSCEEEEE
T ss_pred             ceEecCCCceEEeCCC-CEEEEEEEecCCCCeEEE
Confidence            3432 34566778899 999999999999999998

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}

Probab=99.97  E-value=1e-29  Score=178.95  Aligned_cols=192  Identities=22%  Similarity=0.351  Sum_probs=151.9

Q ss_pred             CCCCCCeeEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeE
Q psy7036           4 AEDFAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGL   83 (254)
Q Consensus         4 ~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~   83 (254)
                      .+..+|.|...+....+.+|+++.|.|.+.+.|.+.+.|++++..+....+..+...  +   ....|.|.+++..|+|.
T Consensus         3 ~~~~~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~--~---~~~~L~i~~~~~~d~G~   77 (197)
T 3lcy_A            3 MSGEAPGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSD--G---RTHTLTVMTEEQEDEGV   77 (197)
T ss_dssp             CCCEEEEEEECCCCEEEETTSEEEEEEEEEEESCCEEEEEETTEEECCCSSEEEEES--S---SEEEEEEECCSGGGCEE
T ss_pred             ccCCCCcccccCCceEEeCCCcEEEEEEEecCCCCEEEEEECCEECCCCccEEEEeC--C---CEEEEEEecCCccCCEE
Confidence            456789999999999999999999999999889999999999999876665544322  1   23479999999999999


Q ss_pred             EEEEEEcCCCceEEEEEEEEeccccCCCCCccccCCCeeeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEE
Q psy7036          84 YKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSI  163 (254)
Q Consensus        84 Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~  163 (254)
                      |+|.+.+..+.......|.|...+...  + .........+..|+.+.|.|.+.+.|.+.+.|++++..+.......+..
T Consensus        78 Y~C~~~n~~~~~~~~~~l~v~~~p~~~--~-~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~~~  154 (197)
T 3lcy_A           78 YTCIATNEVGEVETSSKLLLQATPQFH--P-GYPLKEKYYGAVGSTLRLHVMYIGRPVPAMTWFHGQKLLQNSENITIEN  154 (197)
T ss_dssp             EEEEEECSSCEEEEEEEEEEEEEEEEC--T-TSCCCSEEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEE
T ss_pred             EEEEEECCCCceeEEEEEEEEcCCCCC--C-CccCCcceeecCCCeEEEEEEEeeeeCCeeEEeECCEECCCCCceEEEE
Confidence            999999988887777888776422111  0 0112344567789999999999999999999999999887655544433


Q ss_pred             cCCCCceeeEEEEccCCC-CCceeEEEEEEcCCCcceEEEEEEEe
Q psy7036         164 DKDGHSYFASLEIIDVTI-EDAGKYKVTAKNELGESNATISLNFD  207 (254)
Q Consensus       164 ~~~~~~~~~~l~i~~~~~-~d~G~y~C~~~~~~~~~~~~~~~~v~  207 (254)
                      ...    ...|.|.++.. +|.|.|+|.|.|..|....++.|.|.
T Consensus       155 ~~~----~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  195 (197)
T 3lcy_A          155 TEH----YTHLVMKNVQRKTHAGKYKVQLSNVFGTVDAILDVEIQ  195 (197)
T ss_dssp             CSS----EEEEEESSCCHHHHCEEEEEEEECSSCEEEEEEEEEEE
T ss_pred             cCC----EEEEEEccccchhhCceEEEEEEcCcCceEEEEEEEEe
Confidence            221    13799999985 89999999999999999888888775

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}

Probab=99.97  E-value=1.3e-30  Score=208.53  Aligned_cols=212  Identities=18%  Similarity=0.223  Sum_probs=153.7

Q ss_pred             CCCCCeeEeCCCceeecCCCeEEEEEEEe-eCCCCceEEEeCCEEeeeCCcceEEEee-cCCcceEEEEEEeccCCCCCe
Q psy7036           5 EDFAPSFTQKPQLRQEDEGNRLIFECQLL-CNPKPDIVWFRGETQLSEDTRTVMKTTP-IGTNKYLVALELDDVIETDAG   82 (254)
Q Consensus         5 ~~~~p~~~~~~~~~~v~~g~~v~l~C~~~-~~~~~~v~W~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~i~~~~~~d~G   82 (254)
                      +...|.+  .|....+.+|+++.|.|.+. +.|.+.++|++++..+............ .........|.|.+++.+|+|
T Consensus       226 V~~~p~~--~p~~~~v~~G~~v~L~C~~~~g~p~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG  303 (527)
T 3qs9_E          226 LNQTPQT--TLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTG  303 (527)
T ss_dssp             SSSCCCC--SCCEEEECTTSCEEEEEEEEESSSCCCEEEECSSSCCCGGGEEEEEEEETTTEEEEEEEEEESSCCGGGCE
T ss_pred             EeccCcc--CCCceEEeCCCeEEEEEEEccCCCCeEEEEEECCEECCCCceeeeeeeccCcceeeEEEEEEccCCcccCe
Confidence            3344544  56677899999999999996 8899999999999877554332221111 111122346999999999999


Q ss_pred             EEEEEEEcCCCceEEEEEEEEeccccCCCCCccccC--CCeeeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcce
Q psy7036          83 LYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKK--PSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHK  160 (254)
Q Consensus        83 ~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~--~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~  160 (254)
                      .|+|.+.|.   ....+.|.|..      +|.+...  .....+.+|+.+.|.|.+.+.|.|.+.|+|++..+.......
T Consensus       304 ~Y~C~a~N~---~~~~~~L~V~~------~p~i~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~  374 (527)
T 3qs9_E          304 YYTCSSSKH---PSQSALVTIVE------KGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGL  374 (527)
T ss_dssp             EEEEEETTE---EEEEEEEEEC--------CEEECCCSCCEECCCTTCCCCEEEEEEEESCCEEEEEETTEEEECBCCBC
T ss_pred             EEEEEEEeC---CCceEEEEEEc------cCccccccCcccEEEcCCCeEEEEEEEEecCCCEEEEEECCEECcCCcccc
Confidence            999999987   56677777763      2222221  124567789999999999999999999999999886544311


Q ss_pred             EEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcceEEEEEEEecCCCCCCCCCCCCeeecCCccccccCCCCcEEE
Q psy7036         161 FSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVI  240 (254)
Q Consensus       161 ~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~l  240 (254)
                         ..+.     .|.|.+++.+|+|.|+|.|.|..|....++.|.|..          +|.+...+.         ...|
T Consensus       375 ---~~~~-----~L~I~~v~~~D~G~YtC~A~N~~g~~~~~~~L~V~~----------~P~i~~~~~---------~~~l  427 (527)
T 3qs9_E          375 ---DNGY-----SISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRR----------KPQVLAEAS---------ASQA  427 (527)
T ss_dssp             ---SSSS-----EEEEECCCTTCCSCEEEEEEETTEEEEEEEEEC--C----------CCEEEECCC---------CE--
T ss_pred             ---cCCc-----EEEEecCCcccCEEEEEEEEeCCCcEEEEEEEEEec----------CCeEEEeCC---------CCEE
Confidence               1122     799999999999999999999999888888888764          666665432         2357


Q ss_pred             EEEEeccCCCceeC
Q psy7036         241 ECRLVGEPEPTISW  254 (254)
Q Consensus       241 ~C~~~~~p~p~~~W  254 (254)
                      .|.+.|+|.|.++|
T Consensus       428 ~C~a~g~P~p~i~W  441 (527)
T 3qs9_E          428 SCFSDGYPLPSWTW  441 (527)
T ss_dssp             -EEEECSSCCEEEE
T ss_pred             EEEEEEEcCCeEEE
Confidence            99999999999999

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A

Probab=99.97  E-value=1.8e-29  Score=179.72  Aligned_cols=192  Identities=26%  Similarity=0.457  Sum_probs=150.4

Q ss_pred             CCCCeeEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeCCEEee-eCCcceEEEeecCCcceEEEEEEeccCC-CCCeE
Q psy7036           6 DFAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLS-EDTRTVMKTTPIGTNKYLVALELDDVIE-TDAGL   83 (254)
Q Consensus         6 ~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~i~~~~~-~d~G~   83 (254)
                      ..+|.|...|....+.+|++++|.|.+.+.|.+.+.|++++..+. ...++.+.....    ....|.|.+++. .|+|.
T Consensus         4 ~~pP~~~~~p~~~~v~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~----~~~~L~i~~v~~~~d~G~   79 (212)
T 2yd1_A            4 AHPPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPG----GISILRIEPVRAGRDDAP   79 (212)
T ss_dssp             -CCCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEETTEECCTTSTTEEEEEETT----TEEEEEESSCCTTTTCSE
T ss_pred             CCCCEEEcCCCceEEecCCEEEEEEEEccCCCCeEEEEECCEECCCCcceeEEEEcCC----CeEEEEEEecCCCCcCce
Confidence            358999999999999999999999999999999999999999886 333333332211    124899999999 99999


Q ss_pred             EEEEEEcCCCc-eEEEEEEEEeccccC-CCCCccccCCCeeeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcceE
Q psy7036          84 YKVKAKNKMGE-VAASINLNFSREQID-GLAPTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKF  161 (254)
Q Consensus        84 Y~C~~~~~~~~-~~~~~~l~v~~~~~~-~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~  161 (254)
                      |+|.+.|..+. ....+.|.|...... ..+|.+...+....+..|+.+.|.|.+.+.|.+.+.|++++..+....... 
T Consensus        80 Y~C~~~n~~g~~~~~~~~l~V~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~-  158 (212)
T 2yd1_A           80 YECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRY-  158 (212)
T ss_dssp             EEEEEECSSSCEEEEEEEEEEECTTCSCTTCCEEEECCCCEEEETTCCEEECCEEECSSCCEEEEEETTEECCTTSTTE-
T ss_pred             EEEEEEeCCCCeEEeeEEEEEecccCCCCCCCeeEeCCCceEeecCCeEEEEEEeccCCCCeEEEEECCeEcccCCCeE-
Confidence            99999999887 677888888642211 112455555556678889999999999999999999999999886543322 


Q ss_pred             EEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcceEE-EEEEEec
Q psy7036         162 SIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNAT-ISLNFDS  208 (254)
Q Consensus       162 ~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~-~~~~v~~  208 (254)
                      ... ++     .|.|.+++.+|.|.|+|.|.|..|..... +.|.|..
T Consensus       159 ~~~-~~-----~L~i~~v~~~d~G~Y~C~a~N~~G~~~s~~~~l~V~~  200 (212)
T 2yd1_A          159 SLK-DG-----FLQIENSREEDQGKYECVAENSMGTEHSKATNLYVKV  200 (212)
T ss_dssp             EEE-TT-----EEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC
T ss_pred             Ecc-CC-----eEEEccCChhhCEEEEEEeecCCCceeEEEEEEEEEe
Confidence            222 22     79999999999999999999999987653 6777774

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}

Probab=99.97  E-value=3.7e-29  Score=187.75  Aligned_cols=235  Identities=19%  Similarity=0.314  Sum_probs=168.3

Q ss_pred             CCCCeeEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCC-cceEEEeecCCcceEEEEEEeccCCCCCeEE
Q psy7036           6 DFAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDT-RTVMKTTPIGTNKYLVALELDDVIETDAGLY   84 (254)
Q Consensus         6 ~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y   84 (254)
                      ..+|.|...|....+.+|++++|.|.+.+.|.+.+.|++++..+.... ++.+....    ...+.|.|.+++..|+|.|
T Consensus         2 ~~~P~~~~~p~~~~v~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~----~~~~~L~i~~v~~~d~G~Y   77 (305)
T 2nzi_A            2 AMAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFK----GGYHQLIIASVTDDDATVY   77 (305)
T ss_dssp             CCCCEEEECCCCEEECTTCCEEEEEEEECSSCCEEEEEETTEECCCCSSSEEEEEET----TTEEEEEESSCCGGGCSEE
T ss_pred             CCCCeeeecccceEEeCCCcEEEEEEEeCCCCCeEEEEECCEEcccCCCeEEEEECC----CCEEEEEEccCChhhCeEE
Confidence            358999999999999999999999999999999999999999886543 23222211    1234799999999999999


Q ss_pred             EEEEEcCCCceEEEEEEEEeccccCCCCCccccCCCeeeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEEc
Q psy7036          85 KVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSID  164 (254)
Q Consensus        85 ~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~  164 (254)
                      +|.+.|..|.....+.|.|...+... .+..........+..|+.+.|.|.+.+.|.+.+.|++++..+.......+...
T Consensus        78 ~C~a~n~~g~~~~~~~l~V~~~p~~~-~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~  156 (305)
T 2nzi_A           78 QVRATNQGGSVSGTASLEVEVPAKIH-LPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVT  156 (305)
T ss_dssp             EEEEEETTEEEEEEEEEEECEEEEEC-CCHHHHSSCCEEEETTCCEEEEEEEEEESCCEEEEEESSSBCCSSSSCEEEEC
T ss_pred             EEEEEcCCCCccceEEEEEecCCccC-CCccccccccEEecCCCEEEEEEEECCCCCCEEEEEECCEECCCCCcEEEEEc
Confidence            99999998888788888886432221 12222233456677899999999999999999999999988765554444332


Q ss_pred             CCCCceeeEEEEcc-CCCCCceeEEEEEEcCCCcceEEEEEEEecCCCCCCCCCCCCeeec-CCcccc------ccCCCC
Q psy7036         165 KDGHSYFASLEIID-VTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTE-RPVTKQ------SDDDLN  236 (254)
Q Consensus       165 ~~~~~~~~~l~i~~-~~~~d~G~y~C~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~p~~~~-~~~~~~------~~~g~~  236 (254)
                      ..    ...|.|.+ +..+|.|.|+|.|.|..|....++.+.|...+.++    ..+.+.. ....+.      ...|+ 
T Consensus       157 ~~----~~~l~i~~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~P~~p----~~~~~~~~~~~~v~l~w~~p~~~g~-  227 (305)
T 2nzi_A          157 RS----FTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVADVPDPP----RGVKVSDVSRDSVNLTWTEPASDGG-  227 (305)
T ss_dssp             SS----EEEEEETTCCCSTTCEEEEEEEEETTEEEEEEEEEEEEBCCCCC----EEEEEESCCSSCEEEEEECCSCCSB-
T ss_pred             CC----ceEEEEecCCccCccEEEEEEEEeCCCceeeEEEEEEecCCCCC----CCceeeeccCCEEEEEEcCCccCCC-
Confidence            22    13799999 99999999999999999998888888887532211    0011111 111111      12344 


Q ss_pred             cEEEEEEEeccCCCceeC
Q psy7036         237 DIVIECRLVGEPEPTISW  254 (254)
Q Consensus       237 ~~~l~C~~~~~p~p~~~W  254 (254)
                      ...+.|.+.+.+.+...|
T Consensus       228 ~~i~~y~v~~~~~~~~~w  245 (305)
T 2nzi_A          228 SKITNYIVEKCATTAERW  245 (305)
T ss_dssp             SCEEEEEEEEEETTSCCE
T ss_pred             CceeEEEEEEecCCCCcc
Confidence            566777777776666555

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}

Probab=99.97  E-value=2.3e-29  Score=176.93  Aligned_cols=182  Identities=18%  Similarity=0.332  Sum_probs=143.4

Q ss_pred             CCeeEeCCCceeecCCCeEEEEEEEe-eCCCCceEEEeCCEEeeeCCc--ceEEEeecCCcce--EEEEEEeccCCCCCe
Q psy7036           8 APSFTQKPQLRQEDEGNRLIFECQLL-CNPKPDIVWFRGETQLSEDTR--TVMKTTPIGTNKY--LVALELDDVIETDAG   82 (254)
Q Consensus         8 ~p~~~~~~~~~~v~~g~~v~l~C~~~-~~~~~~v~W~~~~~~~~~~~~--~~~~~~~~~~~~~--~~~l~i~~~~~~d~G   82 (254)
                      +|.|...|....+.+|++++|.|.+. +.|.+.+.|++++..+.....  .++....++...+  ...|.|.+++..|+|
T Consensus         2 ~~~~~~~p~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G   81 (195)
T 2c5d_C            2 ESPFVGNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQDDWIVVSQLRITSLQLSDTG   81 (195)
T ss_dssp             CCSEEECCCCEEECTTCCEEEEEEEEEESSCCCCEEEETTEECCSCEEEEEEEECSSSTTSEEEEEEEEEESSCCSTTCE
T ss_pred             CCeeccChhheEEecCCcEEEecccccCCCCcEEEEEECCEEcccCCCCceEEEEccccccceeeccEEEEEeccccCCc
Confidence            68899999999999999999999998 899999999999999876532  2332222222222  458999999999999


Q ss_pred             EEEEEEEcCCCceEE-EEEEEEeccccCCCCCccccCCCeeeecCCCeEEEEEEEeeCCCC-eEEEEECCEecccCCcce
Q psy7036          83 LYKVKAKNKMGEVAA-SINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQADPAP-TVIWSHSGVQVKEDKRHK  160 (254)
Q Consensus        83 ~Y~C~~~~~~~~~~~-~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~-~~~W~~~~~~~~~~~~~~  160 (254)
                      .|+|.+.+..+.... .+.|.|.      .+|.+...+....+.+|+.+.|.|.+.+.|.+ .+.|++++..+...... 
T Consensus        82 ~Y~C~~~~~~~~~~~~~~~l~V~------~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~~~~~~~-  154 (195)
T 2c5d_C           82 QYQCLVFLGHQTFVSQPGYVGLE------GLPYFLEEPEDRTVAANTPFNLSCQAQGPPEPVDLLWLQDAVPLATAPGH-  154 (195)
T ss_dssp             EEEEEEEETTEEEECCCEEEEEC------CSCEEEECCCCEEECTTCCEEEEEEEECSSCCCEEEEEESSCBSSSSTTS-
T ss_pred             EEEEEEEeCCCceecccEEEEEe------cCCeEEcCCCcEEEcCCCEEEEEeECCCCCCCCEEEEEECCEeccCCCCc-
Confidence            999999998765433 3777775      45666666666778899999999999999999 99999999887654332 


Q ss_pred             EEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcce-EEEEEEE
Q psy7036         161 FSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESN-ATISLNF  206 (254)
Q Consensus       161 ~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~-~~~~~~v  206 (254)
                         ..+     ..|.|.+++  |+|.|+|.|.|..|... ..+.|.|
T Consensus       155 ---~~~-----~~L~i~~~~--d~G~Y~C~a~N~~g~~~s~~~~l~V  191 (195)
T 2c5d_C          155 ---GPQ-----RSLHVPGLN--KTSSFSCEAHNAKGVTTSRTATITV  191 (195)
T ss_dssp             ---SCC-----EEEEECCCS--SCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             ---CCC-----CeEEEcccc--cCceEEEEEEcCCCceEEEEEEEEE
Confidence               111     379999887  78999999999999875 6777776

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*

Probab=99.97  E-value=2.8e-30  Score=199.85  Aligned_cols=223  Identities=26%  Similarity=0.463  Sum_probs=158.5

Q ss_pred             CCCCeeEeCCCceee---cCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEecc-CCCCC
Q psy7036           6 DFAPSFTQKPQLRQE---DEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDV-IETDA   81 (254)
Q Consensus         6 ~~~p~~~~~~~~~~v---~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~-~~~d~   81 (254)
                      +..|.|...|....+   .+|+.+.|.|.+.|.|.+.++|+|+|..+......++... ++      .|.|.+. +..|+
T Consensus         3 ~~~P~f~~~P~~~~~~~~~eg~~v~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~-~g------~l~i~~~~~~~D~   75 (384)
T 3kld_A            3 GSGPVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVV-DG------SLLINNPNKTQDA   75 (384)
T ss_dssp             CEEEEEEECCCCEEEETTCSCSEEEECCEEEEESCCEEEEEETTEECCC----CEEEE-TT------EEEEESCCHHHHC
T ss_pred             CCCCEEEeCCcceEeecCCCCCeEEEEeEecCCCCCEEEEEECCEECcCCCCccEEEE-CC------EEEEcCCCCcccC
Confidence            457899999988776   6899999999999999999999999999865443333321 12      5666665 67899


Q ss_pred             eEEEEEEEcCCCceE-EEEEEEEeccccC--------------------CCC----------------------------
Q psy7036          82 GLYKVKAKNKMGEVA-ASINLNFSREQID--------------------GLA----------------------------  112 (254)
Q Consensus        82 G~Y~C~~~~~~~~~~-~~~~l~v~~~~~~--------------------~~~----------------------------  112 (254)
                      |.|+|.|.|..|... ....+.+......                    ..+                            
T Consensus        76 G~Y~C~A~N~~G~~~s~~~~l~v~~~~~~~~~~~~~~~v~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~  155 (384)
T 3kld_A           76 GTYQCIATNSFGTIVSREAKLQFAYLENFKTRTRSTVSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPSYQDNRRFVSQE  155 (384)
T ss_dssp             EEEEEEEEETTEEEECCCEEEEEEEECCCSCCCCCCEEEEETCCEEECCCCCSEESCEEEEEEETTEECCCSSSEEECTT
T ss_pred             EEEEEEEEcCcccEEecceEEEEecccccccCCCCceeEEcCCCeEEecCCCCCCCCeEEEEEECCCCCEeeccEEEEcC
Confidence            999999998877532 1222222100000                    000                            


Q ss_pred             -------------------------------------------------Ccc-ccCCCeeeecCCCeEEEEEEEeeCCCC
Q psy7036         113 -------------------------------------------------PTF-LKKPSIRQEDDGKRLLFECRIQADPAP  142 (254)
Q Consensus       113 -------------------------------------------------~~~-~~~~~~~~~~~g~~~~l~C~~~~~~~~  142 (254)
                                                                       |.+ ...+....+.+|+.+.|.|.+.+.|.|
T Consensus       156 ~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~~~~~v~~~~~~~~~~p~~~~~~~~~~~~~~G~~v~l~C~~~g~P~p  235 (384)
T 3kld_A          156 TGNLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLECFALGNPVP  235 (384)
T ss_dssp             TCCEEESSCCGGGCEEEEEEEEETTTTEEEECCCEEEEEEEEEECCCEEEEEEEECCSEEEEETTSCEEEEEEEEEESCC
T ss_pred             CCcEEEeecCHHHCceEEEEEecccccceeeCCceEEEEccCCcccccCCceeecCCCceEecCCCcEEEEEEEeecCCC
Confidence                                                             000 001122335679999999999999999


Q ss_pred             eEEEEECCE-ecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcceEEEEEEEecCCCCCCCCCCCCe
Q psy7036         143 TVIWSHSGV-QVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPV  221 (254)
Q Consensus       143 ~~~W~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~p~  221 (254)
                      .+.|++++. .+....  .. ...++     .|.|.+++.+|+|.|+|.|.|..|.......+.|..          +|.
T Consensus       236 ~i~W~k~~~~~~~~~~--~~-~~~~~-----~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~v~~----------~P~  297 (384)
T 3kld_A          236 TILWRRADGKPIARKA--RR-HKSNG-----ILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYA----------QPN  297 (384)
T ss_dssp             EEEEEETTCCCCCTTC--EE-CTTSC-----EEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEE----------EEE
T ss_pred             cEEEEeCCCccccccc--ee-cCCCc-----EEEECCCChhhCEEEEEEEEcCCCeEEEEEEEEEec----------CCc
Confidence            999999543 443211  11 12222     799999999999999999999999888888888874          567


Q ss_pred             eecCCccccccCCCCcEEEEEEEeccCCCceeC
Q psy7036         222 FTERPVTKQSDDDLNDIVIECRLVGEPEPTISW  254 (254)
Q Consensus       222 ~~~~~~~~~~~~g~~~~~l~C~~~~~p~p~~~W  254 (254)
                      +...+....+..|+ .+.|.|.+.|.|.|.++|
T Consensus       298 ~~~~~~~~~v~~g~-~v~l~C~~~g~P~p~i~W  329 (384)
T 3kld_A          298 WVQIINDIHVAMEE-SVFWECKANGRPKPTYRW  329 (384)
T ss_dssp             EEECCCCEEECTTC-CEEEECEEEEESCCEEEE
T ss_pred             cccCCCceEecCCC-CEEEEeECCccCCCeEEE
Confidence            77777777888899 999999999999999999

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}

Probab=99.97  E-value=5.7e-30  Score=188.10  Aligned_cols=200  Identities=19%  Similarity=0.266  Sum_probs=154.1

Q ss_pred             CCeeEeCCCceeecCCCeEEEEEEEeeCCCC-ceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEE
Q psy7036           8 APSFTQKPQLRQEDEGNRLIFECQLLCNPKP-DIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKV   86 (254)
Q Consensus         8 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C   86 (254)
                      .|.|...|....+.+|+.+.|.|.+.+.+.+ .++|+++|..+.....               .|.|.+++..|+|.|+|
T Consensus         1 kP~i~~~p~~~~v~~G~~v~l~C~~~~~~~~~~~~W~~~g~~~~~~~~---------------~l~i~~~~~~d~G~Y~C   65 (262)
T 3rjd_A            1 KAVITLQPPWVSVFQEETVTLHCEVLHLPGSSSTQWFLNGTATQTSTP---------------SYRITSASVNDSGEYRC   65 (262)
T ss_dssp             CCEEEESSCCSEEETTCCEEEEEECSSCCCTTCEEEEETTEECSCCSS---------------EEEESSCCGGGCEEEEE
T ss_pred             CCeEecCCCcEEeeCCCeEEEEEECCCCCCCceEEEEECCEEeeccCC---------------eEEEecCCcccCeEEEE
Confidence            4889999999899999999999999888777 8999999998764321               69999999999999999


Q ss_pred             EEEcCCCceEEEEEEEEeccccCCCCCccccCCCeeeecCCCeEEEEEEE-eeCCCCeEEEEECCEecccCCcceEEEcC
Q psy7036          87 KAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRI-QADPAPTVIWSHSGVQVKEDKRHKFSIDK  165 (254)
Q Consensus        87 ~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~~~~~~~~W~~~~~~~~~~~~~~~~~~~  165 (254)
                      .+.+..+..  .+.|.|..      ++ ....+....+.+|+.+.|.|.+ .+.|.+.+.|++++..+....       .
T Consensus        66 ~~~~~~~s~--~~~l~v~~------~~-~~~~~~~~~~~~g~~v~l~C~~~~~~p~~~v~W~~~g~~~~~~~-------~  129 (262)
T 3rjd_A           66 QRGLSGRSD--PIQLEIHR------GW-LLLQVSSRVFTEGEPLALRCHAWKDKLVYNVLYYRNGKAFKFFH-------W  129 (262)
T ss_dssp             EESSSCCCC--CEEEEEEC------SS-EEEEESCSEEETTSCEEEEEEEGGGCCCEEEEEEETTEEEEEEE-------E
T ss_pred             EEecCCccc--cEEEEEec------cc-eEecCCCeEEecCCeEEEEEEccCCCCCceEEEEECCccccccC-------C
Confidence            998766544  45556642      22 2222334457789999999999 677888999999998764221       1


Q ss_pred             CCCceeeEEEEccCCCCCceeEEEEEEcCCCcceEEEEEEEecCCCCCCCCCCCCeeecCCccccccCCCCcEEEEEEEe
Q psy7036         166 DGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLV  245 (254)
Q Consensus       166 ~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~l~C~~~  245 (254)
                      +     ..|.|.+++.+|.|.|+|.+.|..+.....+.|.|...       ..+|.+...+ ...+.+|+ .+.|.|.+.
T Consensus       130 ~-----~~l~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~l~V~~~-------~~~p~~~~~~-~~~~~~g~-~~~l~C~~~  195 (262)
T 3rjd_A          130 N-----SNLTILKTNISHNGTYHCSGMGKHRYTSAGISVTVKEL-------FPAPVLNASV-TSPLLEGN-LVTLSCETK  195 (262)
T ss_dssp             C-----CCEEESSCCGGGCEEEEEEEESSSEEEEECEEEEEECS-------SCCCEEEESS-CSSEETTC-CEEEEEECC
T ss_pred             C-----CeEEEEECChhhCEEEEEEEeCCCCccccceEEEeccC-------CCCCeEeecC-ceeecCCC-eEEEEeEcc
Confidence            1     26999999999999999999999877777777877642       1256666655 45677888 999999999


Q ss_pred             ccCC-Cce
Q psy7036         246 GEPE-PTI  252 (254)
Q Consensus       246 ~~p~-p~~  252 (254)
                      +.|. |.+
T Consensus       196 ~~p~~p~~  203 (262)
T 3rjd_A          196 LLLQRPGL  203 (262)
T ss_dssp             CCCC----
T ss_pred             cCCCCCCc
Confidence            9986 553

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A

Probab=99.97  E-value=3.2e-29  Score=178.46  Aligned_cols=197  Identities=23%  Similarity=0.387  Sum_probs=147.4

Q ss_pred             CCCCeeEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEecc-CCCCCeEE
Q psy7036           6 DFAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDV-IETDAGLY   84 (254)
Q Consensus         6 ~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~-~~~d~G~Y   84 (254)
                      ..+|.|...|....+.+|+++.|.|.+.|.|.+.+.|++++..+........ ....+   ....|.|.++ +..|+|.|
T Consensus         4 ~~~P~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~v~W~k~~~~~~~~~~~~~-~~~~~---~~~~L~i~~v~~~~d~G~Y   79 (212)
T 2yd6_A            4 ETPPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVI-EFDDG---SGSVLRIQPLRTPRDEAIY   79 (212)
T ss_dssp             CEEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCTTEEEE-EEGGG---TEEEEEECSCCTTTTCEEE
T ss_pred             CCCCeEEeCcceeEEecCCeEEEEEEEeeCCCCEEEEEECCcCCCCCceeEE-EEcCC---CceEEEEeccCCCCCCeEE
Confidence            4578999999999999999999999999999999999999998875433222 22111   1237999999 59999999


Q ss_pred             EEEEEcCCCceEEEEEEEEeccccC-CCCCccccCCCeeeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCC-cceEE
Q psy7036          85 KVKAKNKMGEVAASINLNFSREQID-GLAPTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDK-RHKFS  162 (254)
Q Consensus        85 ~C~~~~~~~~~~~~~~l~v~~~~~~-~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~-~~~~~  162 (254)
                      +|.+.|..+.....+.|.|...... ...|.+...+....+..|+.+.|.|.+.+.|.+.+.|++++..+.... ..++.
T Consensus        80 ~C~a~n~~g~~~~~~~l~V~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~g~~l~~~~~~~~~~  159 (212)
T 2yd6_A           80 ECVASNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIK  159 (212)
T ss_dssp             EEEEEETTEEEEEEEEEEEECGGGCCTTCCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEETTEEC------CCEE
T ss_pred             EEEEEcCCCcEEEEEEEEEeccCccCCCcceeecCCcceeEecCCCEEEEEEecCCCCCeEEEEECCccccCcCCCceEE
Confidence            9999999988888888888643211 123455555556678889999999999999999999999999886542 11222


Q ss_pred             EcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcce-EEEEEEEec
Q psy7036         163 IDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESN-ATISLNFDS  208 (254)
Q Consensus       163 ~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~-~~~~~~v~~  208 (254)
                      ......  .+.|.|.++..+|.|.|+|.|.|..|... ....+.+..
T Consensus       160 ~~~~~~--~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~s~~a~l~~~~  204 (212)
T 2yd6_A          160 QLRSES--IGALQIEQSEESDQGKYECVATNSAGTRYSAPANLYVRG  204 (212)
T ss_dssp             EEEETT--EEEEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC
T ss_pred             EEecCC--eEEEEEcCCCcccCEEEEEEEECCCCccccccccEEEEe
Confidence            211111  24899999999999999999999999763 446666653

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}

Probab=99.97  E-value=1.2e-29  Score=197.47  Aligned_cols=227  Identities=21%  Similarity=0.380  Sum_probs=167.9

Q ss_pred             CCCCeeEeCCCceeecCCCeEEEEEEEee-CCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEecc-----CCC
Q psy7036           6 DFAPSFTQKPQLRQEDEGNRLIFECQLLC-NPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDV-----IET   79 (254)
Q Consensus         6 ~~~p~~~~~~~~~~v~~g~~v~l~C~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~-----~~~   79 (254)
                      .....|...|.+..+.+|++++|.|.+.+ .|.+.+.|+|+|..+......+.....++      .|.|.++     +..
T Consensus        19 ~~~~~~~~~P~~~~v~~G~~v~L~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~~~~~------~l~i~~~~~~~~~~~   92 (403)
T 3laf_A           19 RRSLHFVSEPSDAVTMRGGNVLLNCSAESDRGVPVIKWKKDGLILALGMDDRKQQLPNG------SLLIQNILHSRHHKP   92 (403)
T ss_dssp             CCSSEEEECCCCEEECTTCCEEECCEEECTTCCCEEEEEETTEECCTTSCTTEEECTTS------CEEECSCCCBTTBCS
T ss_pred             ceeEEEEeCCCceEEecCCcEEEEEEcCCCCCCceEEEEECCEECccCCcccEEEecCC------cEEEeeeeccCCCCC
Confidence            34567888999999999999999999976 57788999999999875443333333222      4666666     677


Q ss_pred             CCeEEEEEEEcCCCce--EEEEEEEEeccccCCCCCccccCCCeeeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCC
Q psy7036          80 DAGLYKVKAKNKMGEV--AASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDK  157 (254)
Q Consensus        80 d~G~Y~C~~~~~~~~~--~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~  157 (254)
                      |+|.|+|.+.+..+..  ...+.+.|.      .++.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+....
T Consensus        93 D~G~Y~C~~~~~~~~~~~s~~~~l~v~------~p~~~~~~~~~~~~~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~  166 (403)
T 3laf_A           93 DEGLYQCEASLGDSGSIISRTAKVMVA------GPLRFLSQTESITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIP  166 (403)
T ss_dssp             SCEEEEEEEECGGGCEEECCCEEEEEC------CCCEECSCCCCEEEETTSCEEECCCEECSSCCEEEEEESSSBCCCCT
T ss_pred             cceEEEEEEEeCCCccEEEEEEEEEec------CCCccccCCCcEEEEcCCeEEEEEEEcccCCCeEEEEECCEeccccC
Confidence            9999999999654332  334556654      35555666667788899999999999999999999999998775322


Q ss_pred             -cceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcc-eEEEEEEEecCCCCCCCCCCCCeeecCCccccccCCC
Q psy7036         158 -RHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGES-NATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDL  235 (254)
Q Consensus       158 -~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~g~  235 (254)
                       ........++     .|.|.+++.+|+|.|+|.+.|..+.. .....+.|...+..    ...+.+...+....+.+|+
T Consensus       167 ~~~~~~~~~~~-----~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~~l~v~~~p~~----~~~~~~~~~~~~~~~~~g~  237 (403)
T 3laf_A          167 GDSRVVVLPSG-----ALQISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGL----HRQLYFLQRPSNVIAIEGK  237 (403)
T ss_dssp             TCCSEEECTTS-----CEEECSCCGGGCEEEEEEEECSSCCCBCCCEEEEEECCCCC----CEEEEEEECCCCEEEETTS
T ss_pred             CceEEEEcCCc-----eEEEcccccccCEEEEEEEEcCCCceeccceeEEEecCCCc----ccCceEecCCCceEecCCC
Confidence             2223333333     79999999999999999999987753 34566666542211    1123455566667788899


Q ss_pred             CcEEEEEEEeccCCCceeC
Q psy7036         236 NDIVIECRLVGEPEPTISW  254 (254)
Q Consensus       236 ~~~~l~C~~~~~p~p~~~W  254 (254)
                       .+.|.|.+.+.|.|.+.|
T Consensus       238 -~~~l~C~~~~~p~~~~~W  255 (403)
T 3laf_A          238 -DAVLECCVSGYPPPSFTW  255 (403)
T ss_dssp             -CEEECCEEEEESCCEEEE
T ss_pred             -cEEEEEEcCCCCCCeEEE
Confidence             999999999999999998

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A

Probab=99.97  E-value=7.1e-29  Score=173.81  Aligned_cols=184  Identities=21%  Similarity=0.353  Sum_probs=142.8

Q ss_pred             CCeeEeCCCceeecCCCeEEEEEEEeeCC-CCceEEEe-CCEEeee-CCcceEEEeecCCcceEEEEEEeccCCCCCeEE
Q psy7036           8 APSFTQKPQLRQEDEGNRLIFECQLLCNP-KPDIVWFR-GETQLSE-DTRTVMKTTPIGTNKYLVALELDDVIETDAGLY   84 (254)
Q Consensus         8 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~-~~~v~W~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y   84 (254)
                      ++.|...|....+.+|++++|.|.+.+.+ .+.+.|++ ++..+.. ..++.+...    ......|.|.+++..|+|.|
T Consensus         2 p~~v~~~p~~~~v~~G~~v~l~C~~~~~~~~~~v~W~~~~g~~~~~~~~~~~~~~~----~~~~~~L~i~~~~~~d~G~Y   77 (191)
T 1epf_A            2 VLQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWN----DDDSSTLTIYNANIDDAGIY   77 (191)
T ss_dssp             -CCEEEESSSEEEETTCCEEEEEEECCCSCCCEEEEECTTSCEECCBSSSEEEEEE----ETTEEEEEECSCCGGGCEEE
T ss_pred             ceEEEecCCCcEEcCCCCEEEEEECCCCCCCceEEEEeCCCccccCCCCeEEEEEC----CCCceEEEEccCCcccCEEE
Confidence            46788889999999999999999998866 78999999 8887763 333332221    11234899999999999999


Q ss_pred             EEEEEcCC-CceEEEEEEEEeccccCCCCCccccCCCeeeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEE
Q psy7036          85 KVKAKNKM-GEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSI  163 (254)
Q Consensus        85 ~C~~~~~~-~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~  163 (254)
                      +|.+.+.. +.....+.|.|.      .+|.+...+....+..|+.+.|.|.+.+.|.+.+.|++++..+......++..
T Consensus        78 ~C~~~~~~~~~~~~~~~l~v~------~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~  151 (191)
T 1epf_A           78 KCVVTAEDGTQSEATVNVKIF------QKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIV  151 (191)
T ss_dssp             EEEEEETTTEEEEEEEEEEEE------CCSEEEECCSSEECCTTSCEEECCEEECSSCCEEEEEETTEEGGGGCCTTEEE
T ss_pred             EEEEEcCCCcceEEEEEEEee------cCceEecCCCcEeecCCCeEEEEEEECCCCCCEEEEEECCEEeeccCCceEEE
Confidence            99999987 455667777775      45555556666778899999999999999999999999999886554444544


Q ss_pred             cCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcceEEEEEEE
Q psy7036         164 DKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNF  206 (254)
Q Consensus       164 ~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~v  206 (254)
                      ..++     .|.|.++..+|.|.|+|.|.|..+.......+.|
T Consensus       152 ~~~~-----~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~i~v  189 (191)
T 1epf_A          152 LSNN-----YLQIRGIKKTDEGTYRCEGRILARGEINFKDIQV  189 (191)
T ss_dssp             CTTS-----CEEETTCCGGGCEEEEEEEEEGGGTEEEEEEEEE
T ss_pred             ecCC-----eEEECCCChhhCEEEEEEEEEecceeEEEEEEEE
Confidence            4444     6999999999999999999998865544444443

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}

Probab=99.97  E-value=6e-29  Score=194.11  Aligned_cols=225  Identities=12%  Similarity=0.159  Sum_probs=151.9

Q ss_pred             eeEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEE
Q psy7036          10 SFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAK   89 (254)
Q Consensus        10 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~   89 (254)
                      .++..+..+.|.+|+++.|.|.+.+.|.+.+.|++++..+.......      ....+...|.|.+++..|+|.|+|.+.
T Consensus        50 ~~~~~~~~v~V~~G~~v~L~C~v~g~P~p~i~W~~~~~~l~~~~~~~------~~~~~~~sL~I~~v~~~D~G~Y~C~a~  123 (423)
T 3qs7_E           50 GTVYEAAAVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFD------LQNRGVVSMVILKMTETQAGEYLLFIQ  123 (423)
T ss_dssp             ------CEEEECSSCCEEEEEECSCCSSCEEEEEETTEEECCCCBC-----------CEEEEEESSCCSSSCSEEEEEEE
T ss_pred             cceeccccEEEecCCcEEEEEEEEcCCCCeEEEEECCCccCccceec------cccceEEEEEEeecCcccCEEEEEEEE
Confidence            44556668899999999999999999999999999998765432211      111223379999999999999999999


Q ss_pred             cCCCceEEEEEEEEeccccC---------------------C-CCCcc--------------------------------
Q psy7036          90 NKMGEVAASINLNFSREQID---------------------G-LAPTF--------------------------------  115 (254)
Q Consensus        90 ~~~~~~~~~~~l~v~~~~~~---------------------~-~~~~~--------------------------------  115 (254)
                      |..|.....+.|.|...+..                     + .+|.+                                
T Consensus       124 N~~g~~~~~~~l~V~~~p~~~~~~p~~~~~~~~~~L~C~a~G~P~P~i~W~k~~~~~~~~~~~~~~~~~~~~~~l~~~d~  203 (423)
T 3qs7_E          124 SEATNYTILFTVSIRNTLLYTLRRPYFRKMENQDALVCISESVPEPIVEWVLCDSQGESCKEESPAVVKKEEKVLHELFG  203 (423)
T ss_dssp             C--CEEEEEEEEEEC-----CEEEEEEEECSSSSCEEEEEEESSCCEEEEEEC-------------CEEECCSEECCCCS
T ss_pred             cCCCcEEEEEEEEEecCccccccCCcEeccCCceEEEEEEeeecCCeEEEEECCCCCccccccccccccccceEEecccC
Confidence            99888777777766510000                     0 00000                                


Q ss_pred             ---------------------------ccCCCeeeecCCCeEEEEEEEee-CCCCeEEEEECCEecccCCcceEE-EcCC
Q psy7036         116 ---------------------------LKKPSIRQEDDGKRLLFECRIQA-DPAPTVIWSHSGVQVKEDKRHKFS-IDKD  166 (254)
Q Consensus       116 ---------------------------~~~~~~~~~~~g~~~~l~C~~~~-~~~~~~~W~~~~~~~~~~~~~~~~-~~~~  166 (254)
                                                 ...+....+.+|+.+.|.|.+.+ .|.+.+.|++++..+......... ...+
T Consensus       204 G~Y~C~A~N~~G~~~~~~~~l~V~~~p~~~~~~~~v~~G~~v~L~C~~~g~~p~p~i~W~k~g~~l~~~~~~~~~~~~~~  283 (423)
T 3qs7_E          204 TDIRCCARNELGRECTRLFTIDLNQTPQTTLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTN  283 (423)
T ss_dssp             SCEEEEEECSSCEEEEECEEEESSSCCCSSTTEEEEETTSCEEEEEEEEESSSCCCEEEEESSSBCCGGGEEEEEEEETT
T ss_pred             eEEEEEEEcCCCCcceeeEEEEEecCCccCCCceEEeCCCeEEEEEEEEcCCCCcEEEEEECCEEccccceeecccccCC
Confidence                                       00111233557999999999998 677899999999877543221111 1111


Q ss_pred             C-CceeeEEEEccCCCCCceeEEEEEEcCCCcceEEEEEEEecCCCCCCCCCCCCeeecCC--ccccccCCCCcEEEEEE
Q psy7036         167 G-HSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERP--VTKQSDDDLNDIVIECR  243 (254)
Q Consensus       167 ~-~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~p~~~~~~--~~~~~~~g~~~~~l~C~  243 (254)
                      . ......|.|.+++.+|+|.|+|.|.|.   ....+.|.|..          +|.+...+  ....+.+|+ .+.|.|.
T Consensus       284 ~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~---~~~~~~L~V~~----------~p~i~~~~~~~~~~v~~G~-~v~l~C~  349 (423)
T 3qs7_E          284 RTMIRILFAFVSSVARNDTGYYTCSSSKH---PSQSALVTIVE----------KGFINATNSSEDYEIDQYE-EFCFSVR  349 (423)
T ss_dssp             TEEEEEEEEEESSCCTTTCEEEEEEETTE---EEEEEEEEEES----------SCEEEEC---CEECCCTTC-CCCEEEE
T ss_pred             ceeEEEEEEEEeecCHHHCEEEEEEEecC---CCceEEEEEEe----------CCcceEcCCCccEEecCCC-eEEEEEE
Confidence            1 122347999999999999999999998   66667777764          34444333  345678889 9999999


Q ss_pred             EeccCCCceeC
Q psy7036         244 LVGEPEPTISW  254 (254)
Q Consensus       244 ~~~~p~p~~~W  254 (254)
                      +.|+|.|.++|
T Consensus       350 ~~g~P~p~i~W  360 (423)
T 3qs7_E          350 FKAYPQIRCTW  360 (423)
T ss_dssp             EEEESCCEEEE
T ss_pred             EEEcCCCeEEE
Confidence            99999999999

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*

Probab=99.97  E-value=1.5e-29  Score=197.05  Aligned_cols=227  Identities=27%  Similarity=0.457  Sum_probs=167.1

Q ss_pred             CCCCCeeEe-CCCceeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEe----ccCCC
Q psy7036           5 EDFAPSFTQ-KPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELD----DVIET   79 (254)
Q Consensus         5 ~~~~p~~~~-~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~----~~~~~   79 (254)
                      ...+|.|.. .+....+.+|++++|.|.+.|.|.+.++|+|+|..+......++.......     .|.|.    +++.+
T Consensus        13 ~~~~P~i~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~-----~l~i~~~~~~~~~~   87 (404)
T 3p3y_A           13 LTQPPTITKQSAKDHIVDPRDNILIECEAKGNPAPSFHWTRNSRFFNIAKDPRVSMRRRSG-----TLVIDFRSGGRPEE   87 (404)
T ss_dssp             CCCCCCEEEECCTTCEECSSSCCCCCEEECCSSCCEEEEEETTEECCGGGCSSCBCCSSSC-----CCBCCCTTTCCTTS
T ss_pred             ccCCCcccccCCccEEEcCCCCEEEEEEecCCCCCeEEEEECCEEeeeecCCcceEecCCc-----eEEEEeccCCCCcc
Confidence            446788875 467778999999999999999999999999999987644332222111111     35553    78899


Q ss_pred             CCeEEEEEEEcCCCceE-EEEEEEEeccccC-------------------------------------------------
Q psy7036          80 DAGLYKVKAKNKMGEVA-ASINLNFSREQID-------------------------------------------------  109 (254)
Q Consensus        80 d~G~Y~C~~~~~~~~~~-~~~~l~v~~~~~~-------------------------------------------------  109 (254)
                      |+|.|+|.+.|..|... ..+.|.|...+..                                                 
T Consensus        88 D~G~Y~C~a~n~~g~~~s~~~~l~V~~~p~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~  167 (404)
T 3p3y_A           88 YEGEYQCFARNKFGTALSNRIRLQVSKSPLWPKENLDPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPITQDKRVSQ  167 (404)
T ss_dssp             SCEEEEEEEECSSCEEEEEEEEEEECCCCCCCCCCCCCEEEETTSCEEECCCCCCCSSCCEEEEECTTSCBCCCCSSEEE
T ss_pred             CCEEEEEEEEcCCCeEeeeeEEEEEeccCccccCCCCCeEEccCCcEEEEeCCCCCCCCCeEEEeCCCccccCCCCcEEE
Confidence            99999999999887753 4566666430000                                                 


Q ss_pred             -----------------C--------------------------------CCCccccC---CCeeeecCCCeEEEEEEEe
Q psy7036         110 -----------------G--------------------------------LAPTFLKK---PSIRQEDDGKRLLFECRIQ  137 (254)
Q Consensus       110 -----------------~--------------------------------~~~~~~~~---~~~~~~~~g~~~~l~C~~~  137 (254)
                                       .                                .+|.+...   .....+..|+.+.|.|.+.
T Consensus       168 ~~~~~l~i~~v~~~d~~G~Y~C~a~n~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~~~~G~~v~l~C~~~  247 (404)
T 3p3y_A          168 GHNGDLYFSNVMLQDMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLECIAS  247 (404)
T ss_dssp             CTTSCEEESSCCSGGGSSCBEEEEECTTTCCEEECCCBCEEEECCSCCCCCCCCBSSSCSSEEEEEEETTSCEEEECCBC
T ss_pred             cCCCcEEEEeeeeccCCcceEEEEEeccccceeccCceeEEEeccCCccccCCccccccCCCCCceEecCCCEEEEEEEC
Confidence                             0                                00000000   0112356789999999999


Q ss_pred             eCCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcceEEEEEEEecCCCCCCCCC
Q psy7036         138 ADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEG  217 (254)
Q Consensus       138 ~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~v~~~~~~~~~~~  217 (254)
                      +.|.+.+.|++++..+..... .. ...++     .|.|.++..+|+|.|+|.|.|..|.....+.|.|..         
T Consensus       248 g~p~~~v~W~~~~~~~~~~~~-~~-~~~~~-----~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~---------  311 (404)
T 3p3y_A          248 GVPTPDIAWYKKGGDLPSDKA-KF-ENFNK-----ALRITNVSEEDSGEYFCLASNKMGSIRHTISVRVKA---------  311 (404)
T ss_dssp             CSSCCEEEEEETTBCCCTTTE-EE-EGGGT-----EEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEEE---------
T ss_pred             CCCCCcEEEEECCEECCCCcc-cc-cccCc-----eEEEccCCHhHCEEEEEEEEeCCCcEEEEEEEEEeC---------
Confidence            999999999999988754432 22 12222     799999999999999999999999888888888875         


Q ss_pred             CCCeeecCCccccccCCCCcEEEEEEEeccCCCceeC
Q psy7036         218 TKPVFTERPVTKQSDDDLNDIVIECRLVGEPEPTISW  254 (254)
Q Consensus       218 ~~p~~~~~~~~~~~~~g~~~~~l~C~~~~~p~p~~~W  254 (254)
                       +|.+...+....+.+|+ .+.|.|.+.|+|.|.++|
T Consensus       312 -~p~~~~~~~~~~v~~g~-~~~l~C~~~g~p~p~v~W  346 (404)
T 3p3y_A          312 -APYWLDEPKNLILAPGE-DGRLVCRANGNPKPTVQW  346 (404)
T ss_dssp             -EEEEEECCCCEEECTTC-CEEEECEEEEESCCEEEE
T ss_pred             -CCeeeccCCcceeecCC-cEEEEEEccccCCCceEE
Confidence             67777777778888999 999999999999999998

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A

Probab=99.97  E-value=9.9e-29  Score=183.62  Aligned_cols=188  Identities=24%  Similarity=0.468  Sum_probs=152.1

Q ss_pred             CCCCCeeEeCCC-ceeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeE
Q psy7036           5 EDFAPSFTQKPQ-LRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGL   83 (254)
Q Consensus         5 ~~~~p~~~~~~~-~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~   83 (254)
                      +..+|.+...+. ...+.+|+.+.|.|.+.+.|.+.+.|++++..+....+.......     ....|.|.+++..|+|.
T Consensus        95 V~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~-----~~~~L~i~~~~~~d~G~  169 (284)
T 2rik_A           95 VQEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVE-----SVAVLEMYNLSVEDSGD  169 (284)
T ss_dssp             EECCCEEEECCCSEEEEETTCCEEEEEEEESSSCCEEEEEETTEECCCSSSEEEEEET-----TEEEEEECSCCGGGCEE
T ss_pred             ccCCCcccccCCCceEecCCceEEEEEEEeeeCCCEEEEEECCEECcCCCcEEEEEcC-----CEEEEEECCCCcccCEE
Confidence            345677665543 456889999999999999999999999999998776655443322     13379999999999999


Q ss_pred             EEEEEEcCCCceEEEEEEEEeccccCCCCCccccCCCeeeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEE
Q psy7036          84 YKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSI  163 (254)
Q Consensus        84 Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~  163 (254)
                      |+|.+.|..|.....+.|.|.      .+|.+...+....+..|+.+.|.|.+.+.|.+.+.|++++..+.......+..
T Consensus       170 Y~C~a~n~~g~~~~~~~l~V~------~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~  243 (284)
T 2rik_A          170 YTCEAHNAAGSASSSTSLKVK------EPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMS  243 (284)
T ss_dssp             EEEEEECSSCEEEEEEEEEEE------CCCBCCSCCCCEEECTTCCEEEEEECBSSSCCEEEEEETTEEECBTTTEEEEE
T ss_pred             EEEEEEcCCCceeEEEEEEEe------cCCcceeCCCcceecCCCeEEEEEEEEecCCCEEEEEECCEECcCCCCEEEEE
Confidence            999999999988888888887      45555555666778899999999999999999999999999887665544433


Q ss_pred             cCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcceEEEEEEEe
Q psy7036         164 DKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFD  207 (254)
Q Consensus       164 ~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~v~  207 (254)
                      ...    .+.|.|.++..+|.|.|+|.|.|..|....++.|.|+
T Consensus       244 ~~~----~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~  283 (284)
T 2rik_A          244 ENF----LTSIHILNVDSADIGEYQCKASNDVGSYTCVGSITLK  283 (284)
T ss_dssp             ETT----EEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             cCC----EEEEEEcCCCcccCEEEEEEEEeCCCceeEEEEEEEc
Confidence            221    2379999999999999999999999999888888775

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}

Probab=99.97  E-value=2.1e-28  Score=171.26  Aligned_cols=181  Identities=17%  Similarity=0.344  Sum_probs=140.4

Q ss_pred             CCCeeEeCCCceeecC-CCeEEEEEEEeeCCC--CceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeE
Q psy7036           7 FAPSFTQKPQLRQEDE-GNRLIFECQLLCNPK--PDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGL   83 (254)
Q Consensus         7 ~~p~~~~~~~~~~v~~-g~~v~l~C~~~~~~~--~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~   83 (254)
                      .+|.|...+. ..+.+ |++++|.|.+.+.+.  +.+.|++++..+.......          ....|.|.+++..|+|.
T Consensus         2 ~~P~i~~~~~-~~v~~~G~~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~~~~----------~~~~L~i~~~~~~d~G~   70 (190)
T 2wv3_A            2 NEPRIVTSEE-VIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRKNA----------SNMEYRINKPRAEDSGE   70 (190)
T ss_dssp             -CCEEEECCC-EECCCSSSCEEEEEEEEECSSCEEEEEEEETTEECTTCCBCC----------SEEEEEESSCCGGGCEE
T ss_pred             CCCcccccce-EEEccCCceEEEEEEeccCCCCceEEEEEECCEECcccceEe----------ccEEEEEecCCcccCEE
Confidence            4788877554 45656 999999999988776  7899999999886543321          12389999999999999


Q ss_pred             EEEEEEcCCCceEEEEEEEEeccccCCCCCccccCCCeeeecCCCeEEEEEEEeeCCCCeEEEEE--CCEecccC-Ccce
Q psy7036          84 YKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSH--SGVQVKED-KRHK  160 (254)
Q Consensus        84 Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~--~~~~~~~~-~~~~  160 (254)
                      |+|.+.|. +.....+.|.|.      .+|.+...+....+..|+.+.|.|.+.+.|.+.+.|++  ++..+... ...+
T Consensus        71 Y~C~~~n~-~~~~~~~~l~V~------~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~g~~~~~~~~~~~  143 (190)
T 2wv3_A           71 YHCVYHFV-SAPKANATIEVK------AAPDITGHKRSENKNEGQDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSGR  143 (190)
T ss_dssp             EEEEEEET-TEEEEEEEEEEE------CCCEEEEECSEEEEETTSCEEEEEEEECSSCCEEEEEEEETTEEEECCCTTSC
T ss_pred             EEEEEEeC-CcccccEEEEEe------cCCcccccCCcceeeCCCcEEEEEEeCccCCCceEEEEcCCCceeeeecCCCe
Confidence            99999998 777788888887      45666655666778899999999999999999999999  67665421 1122


Q ss_pred             EEEcCCCCceeeEEEEccCC-CCCceeEEEEEEcCCCcceEEEEEEEe
Q psy7036         161 FSIDKDGHSYFASLEIIDVT-IEDAGKYKVTAKNELGESNATISLNFD  207 (254)
Q Consensus       161 ~~~~~~~~~~~~~l~i~~~~-~~d~G~y~C~~~~~~~~~~~~~~~~v~  207 (254)
                      +....++.  .+.|.|.++. .+|.|.|+|.|.|..|....++.|.|.
T Consensus       144 ~~~~~~~~--~~~L~i~~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~  189 (190)
T 2wv3_A          144 FFIINKEN--YTELNIVNLQITEDPGEYECNATNSIGSASVSTVLRVR  189 (190)
T ss_dssp             EEEEECSS--EEEEEECSCCTTTSCEEEEEEEECSSCEEEEEEEEEEE
T ss_pred             EEEecCCC--eeEEEEEeccccCCCEEEEEEEEecCCcceeEEEEEEE
Confidence            22222221  1379999999 799999999999999998888888775

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster}

Probab=99.97  E-value=1.9e-28  Score=206.44  Aligned_cols=234  Identities=24%  Similarity=0.354  Sum_probs=177.7

Q ss_pred             CCCeeEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEE
Q psy7036           7 FAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKV   86 (254)
Q Consensus         7 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C   86 (254)
                      .+|.+...+....+.+|+.+.|.|.+.|.|.+.++|+++|..+....+..............+.|.|.+++..|+|.|+|
T Consensus       428 ~~p~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C  507 (816)
T 3dmk_A          428 DPPVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKC  507 (816)
T ss_dssp             CCCEEEEECCCEEECSSSCEEEEEEEECSSCCEEEEEETTEECCSCTTEEEEEEECTTSCEEEEEEESSCCTTTCEEEEE
T ss_pred             CCCceEecCcceEEcCCCCEEEEEEEecCCCCEEEEEECCEECCCCCCcccccEEecCCCcEEEEEEeeccccCCEEEEE
Confidence            57788887888889999999999999999999999999999987766555433333333445579999999999999999


Q ss_pred             EEEcCCCceEEEEEEEEeccccC---------------------------------------------------------
Q psy7036          87 KAKNKMGEVAASINLNFSREQID---------------------------------------------------------  109 (254)
Q Consensus        87 ~~~~~~~~~~~~~~l~v~~~~~~---------------------------------------------------------  109 (254)
                      .+.|..|.......|.|...+..                                                         
T Consensus       508 ~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~k~~~~l~~~~~~~~~~~~~l~i~~v~  587 (816)
T 3dmk_A          508 IAKSKVGVAEHSAKLNVYGLPYIRQMEKKAIVAGETLIVTCPVAGYPIDSIVWERDNRALPINRKQKVFPNGTLIIENVE  587 (816)
T ss_dssp             EEEETTEEEEEEEEEEECSSCEECCCCCEEEETTCCEEEECCEECSSEEEEEEEETTEESCCSTTEEECTTSEEEESSCC
T ss_pred             EEEECCCeEEEEEEEEEecCCeeEccCCeEEecCCeEEEEEEecCCCCCEEEEEECCeEcccCCceEEecCCeEEEEecC
Confidence            99999888777777766431000                                                         


Q ss_pred             ----------------------------CCCCccc-cCCCeeeecCCCeEEEEEEEeeCCCC-eEEEEECCEecccCCcc
Q psy7036         110 ----------------------------GLAPTFL-KKPSIRQEDDGKRLLFECRIQADPAP-TVIWSHSGVQVKEDKRH  159 (254)
Q Consensus       110 ----------------------------~~~~~~~-~~~~~~~~~~g~~~~l~C~~~~~~~~-~~~W~~~~~~~~~~~~~  159 (254)
                                                  ..+|.+. .......+..|+.+.|.|.+.+.+.+ .+.|++++..+......
T Consensus       588 ~~~d~G~Y~C~a~n~~g~~~~~~~~v~v~~~p~~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~i~W~~~g~~l~~~~~~  667 (816)
T 3dmk_A          588 RNSDQATYTCVAKNQEGYSARGSLEVQVMVLPRIIPFAFEEGPAQVGQYLTLHCSVPGGDLPLNIDWTLDGQAISEDLGI  667 (816)
T ss_dssp             HHHHCEEEEEEEEESSSCEEEEEEEEEEECCCCCBCCCCCSSCEESSCEEEEEEBCCCSSSCCEEEEEETTBCCCGGGTC
T ss_pred             ccccCEEEEEEEEECCCceeeeeEEEEEecCCccccccccccccCCCCeEEEEEEEeCCCCCCEEEEEECCeEcCCCCCe
Confidence                                        0000000 00112234579999999998766554 89999999888654443


Q ss_pred             eEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcceEEEEEEEecCCCCCCCCCCCCeeecCCccccccCCCCcEE
Q psy7036         160 KFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIV  239 (254)
Q Consensus       160 ~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~  239 (254)
                      ........   .+.|.|.++..+|.|.|+|.|.|..|....+..|.|..          +|.+...+....+.+|+ .+.
T Consensus       668 ~~~~~~~~---~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~----------~P~~~~~~~~~~v~~G~-~v~  733 (816)
T 3dmk_A          668 TTSRVGRR---GSVLTIEAVEASHAGNFTCHARNLAGHQQFTTPLNVYV----------PPRWILEPTDKAFAQGS-DAK  733 (816)
T ss_dssp             EEEEETTT---EEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEECEEE----------EEEEEECCCCEEEETTC-CEE
T ss_pred             eEEEcCCC---eeEEEEccCChhhCEEEEEEEEeCCccEEEEEEEEEEe----------CCceeeecccceecCCC-cEE
Confidence            33222221   24799999999999999999999999988888888874          67787778778888999 999


Q ss_pred             EEEEEeccCCCceeC
Q psy7036         240 IECRLVGEPEPTISW  254 (254)
Q Consensus       240 l~C~~~~~p~p~~~W  254 (254)
                      |.|.+.|+|.|.++|
T Consensus       734 l~C~~~g~P~p~i~W  748 (816)
T 3dmk_A          734 VECKADGFPKPQVTW  748 (816)
T ss_dssp             EECEEEEESCCEEEC
T ss_pred             EEEEEecCCCCeEEE
Confidence            999999999999999

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}

Probab=99.97  E-value=1.4e-29  Score=179.21  Aligned_cols=187  Identities=17%  Similarity=0.303  Sum_probs=135.6

Q ss_pred             CCCeeEeCCCceeecCCCeEEEEEEEee-CCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEE
Q psy7036           7 FAPSFTQKPQLRQEDEGNRLIFECQLLC-NPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYK   85 (254)
Q Consensus         7 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~   85 (254)
                      ..|.|.... ...+.+|+.+.|.|.+.+ .|.+.++|++||..+..+.++.+....   ......|.|.+++.+|+|.|+
T Consensus         2 ~~p~~~~~~-~~~v~eg~~v~l~c~~~~~~P~p~i~W~kng~~l~~~~~~~~~~~~---~~g~~~L~I~~v~~~D~G~Y~   77 (207)
T 3rbs_A            2 IDPFTKSEL-AVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDR---NTGIIEMFMEKLQDEDEGTYT   77 (207)
T ss_dssp             ----CCEEE-EEEECGGGCEEEEEECSCCCSCCEEEEEETTEEECSSSSCEEEECT---TTCEEEEEESCCCGGGCEEEE
T ss_pred             CCCeeecCC-ceEEEeCCeEEEEEEEecCCCCCEEEEEECCEECccCCCEEEEEeC---CCCEEEEEECCCChhhCEEEE
Confidence            356666544 568899999999999964 799999999999999877776665422   224457999999999999999


Q ss_pred             EEEEcCCCceEEEEEEEEecccc---------------CCCCCccccCCCeeeecCCCeEEEEEEEeeC-CCCeEEEEEC
Q psy7036          86 VKAKNKMGEVAASINLNFSREQI---------------DGLAPTFLKKPSIRQEDDGKRLLFECRIQAD-PAPTVIWSHS  149 (254)
Q Consensus        86 C~~~~~~~~~~~~~~l~v~~~~~---------------~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~~~~W~~~  149 (254)
                      |.+.|  |.......+.+.....               ...+|.+.... ...+.+|+.+.|.|.+.+. |.|.+.|+|+
T Consensus        78 C~a~N--g~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~-~~~v~~g~~v~l~C~v~g~~P~p~i~W~k~  154 (207)
T 3rbs_A           78 FQLQD--GKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYL-SWEVTGECNVLLKCKVANIKKETHIVWYKD  154 (207)
T ss_dssp             EEEEE--TTEEEEEEEEECTHHHHHHHHHHHHHHHHHHHHTSSEEEEEE-EEEEETTTEEEEEEEEESCCTTCEEEEEET
T ss_pred             EEEEC--CCeEEEEEEEEEccchhhhcccccccccccccCCCCceEecC-CcEEcCCCcEEEEEEEeCCCCCCEEEEEEC
Confidence            99998  4444444433211000               00134443322 3567889999999999998 8999999999


Q ss_pred             CEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcceEEEEEEE
Q psy7036         150 GVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNF  206 (254)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~v  206 (254)
                      +..+......  .. .+   ....|.|.+++.+|+|.|+|.|.|..|....+..|..
T Consensus       155 g~~l~~~~~~--~~-~~---~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~~  205 (207)
T 3rbs_A          155 EREISVDEKH--DF-KD---GICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVD  205 (207)
T ss_dssp             TEEECCCCCC--CC-SS---EEEEEEETTCCGGGCEEEEEEEEETTEEEEEEEEECC
T ss_pred             CEECCCCCce--Ec-CC---CEEEEEECCCCcccCEEEEEEEEcCCCEEEEEEEEec
Confidence            9998654321  11 11   1237999999999999999999999999888877754

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}

Probab=99.97  E-value=8e-29  Score=173.19  Aligned_cols=182  Identities=16%  Similarity=0.367  Sum_probs=136.8

Q ss_pred             CCeeEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEE
Q psy7036           8 APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVK   87 (254)
Q Consensus         8 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~   87 (254)
                      +|.|...+....+.+|++++|.|.+.+.|.+.+.|++++..+......++.....+      .|.|.+++..|+|.|+|.
T Consensus         2 ~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~------~L~i~~~~~~d~G~Y~C~   75 (189)
T 2v5t_A            2 MLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANN------NLQILNINKSDEGIYRCE   75 (189)
T ss_dssp             CCEEEECCSSEEEETTSCEEECCEEECSSCCEEEEEC-----CBCCCTTEEECTTS------CEEETTCCGGGCEEEEEE
T ss_pred             CceeeccCCCEEEeCCCcEEEEEEEcCCCCCEEEEEECCccceeccCCeEEEecCC------CEEEeeCCHhHCcEEEEE
Confidence            68899999999999999999999999889999999999988765433333333222      699999999999999999


Q ss_pred             EEcCCCceE--EEEEEEEeccccCCCCCccccCCC--eeeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEE
Q psy7036          88 AKNKMGEVA--ASINLNFSREQIDGLAPTFLKKPS--IRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSI  163 (254)
Q Consensus        88 ~~~~~~~~~--~~~~l~v~~~~~~~~~~~~~~~~~--~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~  163 (254)
                      +.+..+...  ....+.|..      +|.+.....  ...+..|+.+.|.|.+.+.|.+.+.|++++..+........  
T Consensus        76 ~~~~~~~~~~~~~~~l~v~~------~p~~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~--  147 (189)
T 2v5t_A           76 GRVEARGEIDFRDIIVIVNV------PPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYIL--  147 (189)
T ss_dssp             EEETTTTEEEEEEEEEEEEE------EEEEECSCCEEEEETTSCCCEEEECEEEEESCCEEEEEETTEECCCSSSEEE--
T ss_pred             EEEcCCCceEEEEEEEEecC------CCCcccccccccccccCCCcEEEEEEEccCCCCeEEEEECCEECcCCCcEEE--
Confidence            998775433  344555542      233322222  34677899999999999999999999999998876554333  


Q ss_pred             cCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcceEEEEEEEe
Q psy7036         164 DKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFD  207 (254)
Q Consensus       164 ~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~v~  207 (254)
                      ..++    ..|.|.++..+|.|.|+|.|.|..|....++.|.|.
T Consensus       148 ~~~~----~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  187 (189)
T 2v5t_A          148 KGSN----TELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVF  187 (189)
T ss_dssp             ETTT----TEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             ecCC----CEEEEcCCChhhCeeEEEEEEeCCCceeEEEEEEEE
Confidence            2222    279999999999999999999999988888877765

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*

Probab=99.97  E-value=1.7e-29  Score=203.08  Aligned_cols=229  Identities=16%  Similarity=0.191  Sum_probs=168.3

Q ss_pred             CCCCCeeEeCCCceeecCCCeEEEEEEEeeCCCCceEEEe-CCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCe-
Q psy7036           5 EDFAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFR-GETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAG-   82 (254)
Q Consensus         5 ~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G-   82 (254)
                      +..+|.+...+....+.+|+.++|.|.+.+.+.+.++||+ +|..+....++..  ...+      .|.|.+++..|+| 
T Consensus       111 V~~p~~~~~~~~~~~v~~G~~v~l~C~~~~~~~~~v~W~~~~g~~l~~~~~~~~--~~~~------~L~i~~~~~~d~G~  182 (524)
T 2ec8_A          111 VRDPAKLFLVDRSLYGKEDNDTLVRCPLTDPEVTNYSLKGCQGKPLPKDLRFIP--DPKA------GIMIKSVKRAYHRL  182 (524)
T ss_dssp             CCCSSCSBCCCCCCCEETTSCEEECCCBSCCCCSCEEEECSSSCCCCSSCEEEE--ETTT------EEEEESCCGGGTTC
T ss_pred             ECCCCcccccccceEEEcCCeEEEECcCCCCccceEEEEccCCcCcCCCCceeE--CCCc------cEEEeccchhhCCc
Confidence            3445555566777889999999999999876778999998 7777765443322  2222      6999999999999 


Q ss_pred             EEEEEEEcCCCceE-EEEEEEEeccccCCCCCccccCCCeeeecCCCeEEEEEEEeeCCCCe-EEEEECCEecccCCcce
Q psy7036          83 LYKVKAKNKMGEVA-ASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQADPAPT-VIWSHSGVQVKEDKRHK  160 (254)
Q Consensus        83 ~Y~C~~~~~~~~~~-~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~-~~W~~~~~~~~~~~~~~  160 (254)
                      .|+|.+.|..+... ..+.|.|...  ...+|.+...+....+.+|+.+.|.|.+.+.|.+. +.|++++..+.......
T Consensus       183 ~Y~C~a~n~~~~~~s~~~~l~V~~~--~~~~p~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~~i~W~~~~~~~~~~~~~~  260 (524)
T 2ec8_A          183 CLHCSVDQEGKSVLSEKFILKVRPA--FKAVPVVSVSKASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYN  260 (524)
T ss_dssp             EEEEEEC----CCCCCCEECCEECC--CCSCCEEECSCSEEEEETTSCEEEEEEEEESSTTCEEEEEETTCSCCCCEEEE
T ss_pred             eEEEEEEECCceEEEEEEEEEEEeC--CCCCCcEEecCCcceEEcCCcEEEEEEEecCCCcEEEEEEeCCCCCccccccc
Confidence            99999998766543 3666666421  12566666666777888999999999999998886 99999988742111111


Q ss_pred             EEEcCC-CCceeeEEEEccCCCCCceeEEEEEEcCCCcceEEEEEEEecCCCCCCCCCCCCeeecCC---ccccccCCCC
Q psy7036         161 FSIDKD-GHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERP---VTKQSDDDLN  236 (254)
Q Consensus       161 ~~~~~~-~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~p~~~~~~---~~~~~~~g~~  236 (254)
                      .....+ .......|.|.++..+|+|.|+|.|.|..|.....+.|.|..          +|.+...+   ....+.+|+ 
T Consensus       261 ~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~----------~p~~~~~~~~~~~~~v~~G~-  329 (524)
T 2ec8_A          261 SWHHGDFNYERQATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVVD----------KGFINIFPMINTTVFVNDGE-  329 (524)
T ss_dssp             EEECSSSCEEEEEEEEESSCCTTTCEEEEEEEECSSCEEEEEEEEEEES----------SCEEEEEESSCSEEEECTTC-
T ss_pred             cccccCCccceEEEEEECCCCHHHCEEEEEEEEecCCceEEEEEEEEec----------cCceEeecCCCceEEEcCCC-
Confidence            112111 122335899999999999999999999999888888888874          45554433   356788999 


Q ss_pred             cEEEEEEEeccCCCc-eeC
Q psy7036         237 DIVIECRLVGEPEPT-ISW  254 (254)
Q Consensus       237 ~~~l~C~~~~~p~p~-~~W  254 (254)
                      .+.|.|.+.|+|.|. ++|
T Consensus       330 ~v~l~C~~~g~P~p~~v~W  348 (524)
T 2ec8_A          330 NVDLIVEYEAFPKPEHQQW  348 (524)
T ss_dssp             CEEEEEEEEEESCCCEEEE
T ss_pred             cEEEEEEEeecCCCcEEEE
Confidence            999999999999999 998

>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens}

Probab=99.97  E-value=5.4e-29  Score=200.10  Aligned_cols=235  Identities=13%  Similarity=0.160  Sum_probs=159.0

Q ss_pred             CCCCeeEeCCCceeecCCCeEEEEEEEeeCCCC--ceEEEeCCEEeeeCCcceE-EEeecCCcceEEEEEEeccCCCCCe
Q psy7036           6 DFAPSFTQKPQLRQEDEGNRLIFECQLLCNPKP--DIVWFRGETQLSEDTRTVM-KTTPIGTNKYLVALELDDVIETDAG   82 (254)
Q Consensus         6 ~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~--~v~W~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~G   82 (254)
                      ..+|.+...+....+.+|+.++|.|.+.|.+.+  .++|+|+|..+........ ....++.....+.|.|.+++.+|+|
T Consensus       112 ~~~P~~~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G  191 (523)
T 2rcj_C          112 KANPTVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADGSPVKAGVETTKPSKQSNNKYAASSYLSLTPEQWKSHR  191 (523)
T ss_pred             CcCCeEEecCCcccccCCCceEEEEEeccccCCceEEEEecCCCCCCCceEeccccccCCCCEEEEEEEEEechhcCCCc
Confidence            356777777777677889999999999887653  8999999988754322111 1111222223357999999999999


Q ss_pred             EEEEEEEcCCCceEEEEEEEEeccccCCCCCccccCCCeeeecCCCeEEEEEEEeeC-CCC-eEEEEECCEecccCCcce
Q psy7036          83 LYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQAD-PAP-TVIWSHSGVQVKEDKRHK  160 (254)
Q Consensus        83 ~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~-~~~W~~~~~~~~~~~~~~  160 (254)
                      .|+|.+.|..+.......+.+..  ....+|.+........+.+|+.+.|.|.+.+. |.+ .+.|++++..+.......
T Consensus       192 ~Y~C~a~n~~~~~~~~~~~~~~~--~~~~~P~v~~~~~~~~~~~G~~~~l~C~~~g~~P~p~~v~W~k~g~~~~~~~~~~  269 (523)
T 2rcj_C          192 SYSCQVTHEGSTVEKTVAPTECS--ASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPQPVTVSWNSGALTSGVHTFPA  269 (523)
T ss_pred             eEEEEEEecCcccccceeeeecC--CCCcCCEEEecCCCcccccCCceEEEEEEeceeCCCeEEEEecCCcccceEeCCc
Confidence            99999999887655544433211  11133443322223345689999999999886 777 899999997754322111


Q ss_pred             EEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcceEEEEEEEecCCCCCCCCCCCCe-eecCCcccc-ccCCCCcE
Q psy7036         161 FSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPV-FTERPVTKQ-SDDDLNDI  238 (254)
Q Consensus       161 ~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~p~-~~~~~~~~~-~~~g~~~~  238 (254)
                      .....+.+...+.|.|.++..+| |.|+|.|.|..|.......+.+..          .|. +...|.... +.+|+ .+
T Consensus       270 ~~~~~g~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~g~~~~~~~l~v~~----------~P~~~~~~p~~~~~v~~g~-~~  337 (523)
T 2rcj_C          270 VLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKRVEPLS----------LPSVFLFPPKPKDTLMISR-TP  337 (523)
T ss_pred             EecCCCcEEEEEEEEechhhcCC-ceEEEEEEeCCCCcceEEecCCCc----------CceEEecCCCchhhcccCC-ce
Confidence            21111222334689999999999 999999999999876666665542          233 333444333 67888 99


Q ss_pred             EEEEEEeccCC----CceeC
Q psy7036         239 VIECRLVGEPE----PTISW  254 (254)
Q Consensus       239 ~l~C~~~~~p~----p~~~W  254 (254)
                      .|.|.+.|.|+    +.++|
T Consensus       338 ~l~C~~~g~~p~~~~~~v~W  357 (523)
T 2rcj_C          338 EVTCVVVDVSHEDPQVKFNW  357 (523)
T ss_pred             EEEEEEecccCCCCceEEEE
Confidence            99999999754    47888

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}

Probab=99.97  E-value=3.9e-29  Score=186.39  Aligned_cols=209  Identities=13%  Similarity=0.138  Sum_probs=157.7

Q ss_pred             CCCCeeEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEE
Q psy7036           6 DFAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYK   85 (254)
Q Consensus         6 ~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~   85 (254)
                      ..+|.|...+....+.+|++++|.|.+.+    .++|++++..+.      .. ...+     ..|.|.+++..|+|.|+
T Consensus        10 ~~~P~i~~~~~~~~v~~G~~v~l~C~~~~----~i~W~~~~~~~~------~~-~~~~-----~~L~i~~~~~~d~G~Y~   73 (290)
T 2o26_X           10 PSPPSIHPAQSELIVEAGDTLSLTCIDPD----FVRWTFKTYFNE------MV-ENKK-----NEWIQEKAEATRTGTYT   73 (290)
T ss_dssp             --CCEESSCSSEEEEETTSCEEEEEECTT----EEEEEEECSSSC------EE-EECS-----SEEEETTCCGGGCEEEE
T ss_pred             CCCCEEeCCCCeEEEcCCCcEEEEECCCC----cEEEecCCccee------ee-cCCC-----ceEEEeccCHHhCeEEE
Confidence            46788888888889999999999999976    899999987651      11 1111     27999999999999999


Q ss_pred             EEEEcCCCceEEEEEEEEeccccCCCCCccccCCCeeeecCCCeEEEEEEEeeCCC-CeEEEE-ECCEecccCCcceEEE
Q psy7036          86 VKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQADPA-PTVIWS-HSGVQVKEDKRHKFSI  163 (254)
Q Consensus        86 C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~-~~~~W~-~~~~~~~~~~~~~~~~  163 (254)
                      |.+.|  |. ...+.|.|..      +|..........+.+|+.+.|.|.+.+ |. +.+.|+ +++..+....  ++..
T Consensus        74 C~~~n--g~-~~~~~l~V~~------~~~~~~~~~~~~~~~g~~v~l~C~~~~-p~~~~v~W~~~~g~~l~~~~--~~~~  141 (290)
T 2o26_X           74 CSNSN--GL-TSSIYVFVRD------PAKLFLVGLPLFGKEDSDALVRCPLTD-PQVSQYSLIECDGKSLPTDL--TFVP  141 (290)
T ss_dssp             EEESS--SC-EEEEEEEEEC------SSCCBCCCCCEEEETTSCEEECCCBSC-CSCEEEEEEETTSCCCCTTC--EEEE
T ss_pred             EEeeC--Cc-cEEEEEEEeC------CCcccccccceEEecCCeEEEeCcCCC-CCCceEEEEeCCCcCCCCCC--ceee
Confidence            99998  43 6667777763      233234445567779999999999985 77 889995 6777665432  3333


Q ss_pred             cCCCCceeeEEEEccCCCCCce-eEEEEEEcCCCcc-eEEEEEEEecCCCCCCCCCCCCeeecCCccccccCCCCcEEEE
Q psy7036         164 DKDGHSYFASLEIIDVTIEDAG-KYKVTAKNELGES-NATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIE  241 (254)
Q Consensus       164 ~~~~~~~~~~l~i~~~~~~d~G-~y~C~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~l~  241 (254)
                      ..++     .|.|.+++.+|.| .|+|.|.|..+.. ...+.+.|...      ...+|.+...+....+.+|+ .+.|.
T Consensus       142 ~~~~-----~L~i~~v~~~d~G~~Y~C~a~n~~~~~~s~~~~l~V~~~------~~~~P~i~~~~~~~~v~~G~-~v~l~  209 (290)
T 2o26_X          142 NPKA-----GITIKNVKRAYHRLCVRCAAQRDGTWLHSDKFTLKVREA------IKAIPVVSVPETSHLLKKGD-TFTVV  209 (290)
T ss_dssp             ETTT-----EEEEESCCGGGTTCEEEEEEEETTEEEECCCEEEEEECC------CCSCCEEECSCSBCCCCTTC-CEEEE
T ss_pred             CCCC-----CEEEecccHHHCCCEEEEEEEECCceEEeEEEEEEEEeC------CCCCCccccCCCcceEecCC-cEEEE
Confidence            3333     7999999999999 9999999985543 33466666531      12367787777777888999 99999


Q ss_pred             EEEeccCCCc-eeC
Q psy7036         242 CRLVGEPEPT-ISW  254 (254)
Q Consensus       242 C~~~~~p~p~-~~W  254 (254)
                      |.+.|.|.|. ++|
T Consensus       210 C~~~g~p~p~~i~W  223 (290)
T 2o26_X          210 CTIKDVSTSVNSMW  223 (290)
T ss_dssp             EEEEESSTTCEEEE
T ss_pred             EEEecCCcceeEEE
Confidence            9999999997 998

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}

Probab=99.97  E-value=4.4e-29  Score=189.31  Aligned_cols=209  Identities=15%  Similarity=0.198  Sum_probs=150.2

Q ss_pred             CceeecCCCeEEEEEEEeeC---------CCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCe-EEE
Q psy7036          16 QLRQEDEGNRLIFECQLLCN---------PKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAG-LYK   85 (254)
Q Consensus        16 ~~~~v~~g~~v~l~C~~~~~---------~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G-~Y~   85 (254)
                      ..+.+.+|+++.|.|.+.+.         |.+.++|+|++..+....+. .   ..+      .|.|.+++.+|+| .|+
T Consensus        37 ~~v~v~eG~~v~L~C~~~~~~~~~~~~~~p~~~v~W~k~~~~~~~~~~~-~---~~~------~L~i~~v~~~D~Gs~Y~  106 (329)
T 3oq3_B           37 MNDMAALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRRPLNRR-V---KNG------DLWIANYTSNDSHRRYL  106 (329)
T ss_dssp             EEEEECTTSCEEECCHHHHCTTTGGGSCCTTCEEEEEECSSSCEECSTT-E---ETT------EEEESSCCGGGGGCCEE
T ss_pred             ceEEEECCCeEEEEccCCCCccccccccCCCCeeEEEECCCCccccCce-e---ecc------eEEEcCCChHhCCCcEE
Confidence            55678999999999999774         55789999999876553332 1   111      7999999999999 999


Q ss_pred             EEEEcCCCceEEEEEEEEeccccCCCCCccccCCCeeeecCCCeEEEEEEEeeCC-CCeEEEEECCEecccCCcceEEEc
Q psy7036          86 VKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQADP-APTVIWSHSGVQVKEDKRHKFSID  164 (254)
Q Consensus        86 C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~-~~~~~W~~~~~~~~~~~~~~~~~~  164 (254)
                      |.+.|..|.......+.+..     .+|.+........+.+|+.+.|.|.+.+.| .+.+.|+|++..+..... ++...
T Consensus       107 C~a~n~~g~~~~~~~~~v~~-----~~p~~~~~~~~~~~~~G~~v~L~C~~~g~p~~~~i~W~k~~~~l~~~~~-~~~~~  180 (329)
T 3oq3_B          107 CTVTTKNGDCVQGIVRSHIR-----KPPSCIPETYELGTHDKYGIDLYCGILYAKHYNNITWYKNNQELIIDGT-KYSQS  180 (329)
T ss_dssp             EEEECTTSCEEEEEEEEEEC-----CCCSCEEEEEETTSSTTTCEEEECCCCSCCCCCEEEEEETTEECCCSSS-SEEEE
T ss_pred             EEEEeCCCceeeEEEEEEEc-----CCCcEeccccceEEeCCCcEEEEeccCCCCCCceEEEEECCccCCCCCc-eEecC
Confidence            99999887644433334432     233333222233456799999999999999 899999999998853332 23222


Q ss_pred             CCCCceeeEEEEccCCCCCceeEEEEEEcC--CCcceEE----EEEEEecCCCCCCCCCCCCeeecCCccccccCCCCcE
Q psy7036         165 KDGHSYFASLEIIDVTIEDAGKYKVTAKNE--LGESNAT----ISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDI  238 (254)
Q Consensus       165 ~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~--~~~~~~~----~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~  238 (254)
                       ++     .|.|.+++.+|+|.|+|.|.|.  .|.....    +.|.|...+..     ..|.+  .+....+.+|+ .+
T Consensus       181 -~~-----~L~I~~v~~~D~G~Y~C~a~n~~~~g~~~~~~s~~~~l~V~~~~~~-----~~~~~--~~~~~~v~~G~-~~  246 (329)
T 3oq3_B          181 -GQ-----NLIIHNPELEDSGRYDCYVHYDDVRIKNDIVVSRCKILTVIPSQDH-----RFKLI--LDPKINVTIGE-PA  246 (329)
T ss_dssp             -TT-----EEEECSCCGGGCEEEEEEEEECCTTSSSCEEEEEEEEEEEECCCCC-----CEEEE--CCSEEEECTTS-CE
T ss_pred             -CC-----EEEEeecChhhCEEEEEEEEecccCCCceeEEEeeEEEEEECCCCC-----CCcee--cCCeeEEecCC-CE
Confidence             22     7999999999999999999987  6544333    55666542111     11333  45556788899 99


Q ss_pred             EEEEEEeccC---CC-ceeC
Q psy7036         239 VIECRLVGEP---EP-TISW  254 (254)
Q Consensus       239 ~l~C~~~~~p---~p-~~~W  254 (254)
                      .|.|.+.|.|   .| .++|
T Consensus       247 ~l~C~~~g~p~~~~~i~v~W  266 (329)
T 3oq3_B          247 NITCTAVSTSLLVDDVLIDW  266 (329)
T ss_dssp             EEEEEEEETTCCTTCCEEEE
T ss_pred             EEEEEEEECCCCCCCcEEEE
Confidence            9999999998   67 7788

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster}

Probab=99.97  E-value=1.2e-28  Score=207.64  Aligned_cols=219  Identities=21%  Similarity=0.398  Sum_probs=172.7

Q ss_pred             CCCCeeEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEE
Q psy7036           6 DFAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYK   85 (254)
Q Consensus         6 ~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~   85 (254)
                      ..+|.+...+....+.+|++++|.|.+.+.|.+.++|+++|..+.....               .|.|.+++..|+|.|+
T Consensus       341 ~~~~~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~~~~~~~---------------~L~i~~v~~~d~G~Y~  405 (816)
T 3dmk_A          341 TAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSES---------------VLRIESVKKEDKGMYQ  405 (816)
T ss_dssp             CEEEEEEEESSEEECCTTSCEEEEEEEEEECCCEEEEEETTEECSCCSS---------------EEEESSCCGGGCEEEE
T ss_pred             cCCCceeeCCCceEecCCCCEEEEEEEeccCCCEEEEEECCEECCCCCC---------------EEEEcCCCHHHCEEEE
Confidence            3456666777788899999999999999999999999999998754321               6999999999999999


Q ss_pred             EEEEcCCCceEEEEEEEEeccccCCCCCccccCCCeeeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEEc-
Q psy7036          86 VKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSID-  164 (254)
Q Consensus        86 C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~-  164 (254)
                      |.+.|..+.......+.|...   ..+|.+........+..|+.+.|.|.+.+.|.+.+.|++++..+........... 
T Consensus       406 C~a~n~~g~~~~~~~l~v~~~---~~~p~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~v~W~~~g~~l~~~~~~~~~~~~  482 (816)
T 3dmk_A          406 CFVRNDRESAEASAELKLGGR---FDPPVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIANNDRYQVGQYV  482 (816)
T ss_dssp             EEEECSSCEEEECCEEECCCS---SCCCEEEEECCCEEECSSSCEEEEEEEECSSCCEEEEEETTEECCSCTTEEEEEEE
T ss_pred             EEEECCCCcEEEEEEEEEccc---cCCCceEecCcceEEcCCCCEEEEEEEecCCCCEEEEEECCEECCCCCCcccccEE
Confidence            999999887777777776421   1455555555556788999999999999999999999999998865544332211 


Q ss_pred             CCCCceeeEEEEccCCCCCceeEEEEEEcCCCcceEEEEEEEecCCCCCCCCCCCCeeecCCccccccCCCCcEEEEEEE
Q psy7036         165 KDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRL  244 (254)
Q Consensus       165 ~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~l~C~~  244 (254)
                      .......+.|.|.++..+|.|.|+|.|.|..|....+..+.|..          +|.+. .+....+.+|+ .+.|.|.+
T Consensus       483 ~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~----------~p~~~-~~~~~~v~~G~-~v~l~C~~  550 (816)
T 3dmk_A          483 TVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVYG----------LPYIR-QMEKKAIVAGE-TLIVTCPV  550 (816)
T ss_dssp             CTTSCEEEEEEESSCCTTTCEEEEEEEEETTEEEEEEEEEEECS----------SCEEC-CCCCEEEETTC-CEEEECCE
T ss_pred             ecCCCcEEEEEEeeccccCCEEEEEEEEECCCeEEEEEEEEEec----------CCeeE-ccCCeEEecCC-eEEEEEEe
Confidence            11112234799999999999999999999999888888888874          34443 33345677888 99999999


Q ss_pred             eccCCCceeC
Q psy7036         245 VGEPEPTISW  254 (254)
Q Consensus       245 ~~~p~p~~~W  254 (254)
                      .+.|.+.+.|
T Consensus       551 ~g~p~~~i~W  560 (816)
T 3dmk_A          551 AGYPIDSIVW  560 (816)
T ss_dssp             ECSSEEEEEE
T ss_pred             cCCCCCEEEE
Confidence            9999989988

>4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R

Probab=99.97  E-value=3.7e-29  Score=188.49  Aligned_cols=227  Identities=15%  Similarity=0.180  Sum_probs=151.1

Q ss_pred             eEeCCCceeecCCCeEEEEEEEeeCCCC-----ceEEEeCCEEe-------------eeCCcceEEEeecCCcceEEEEE
Q psy7036          11 FTQKPQLRQEDEGNRLIFECQLLCNPKP-----DIVWFRGETQL-------------SEDTRTVMKTTPIGTNKYLVALE   72 (254)
Q Consensus        11 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~-----~v~W~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~l~   72 (254)
                      ++..|..+.+..|++++|.|.+.+.+.+     .++|+|++...             ....+..+...........++|.
T Consensus         3 vv~~P~~v~~~~G~~v~L~C~v~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~sL~   82 (313)
T 4fqp_A            3 VVQAPTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRNASLR   82 (313)
T ss_dssp             EEECCSEECCBTTSCEEECCEEECCTTSCCCCCEEEEEETTSSSCSEEEETTTEEEESSTTTEEESSCCTTSCCCBCCEE
T ss_pred             EEcCCCEEEEecCCCEEEEEEEECCCCCccceEEEEEEECCCCcceEEEecCCCceeccCcceEEEeeccCCcccceEEE
Confidence            4567888889999999999999875543     48999987521             11112211111111122234799


Q ss_pred             EeccCCCCCeEEEEEEEc-CCCceEEEEEEEEeccccCCCCCccccCCCeeeecCCCeEEEEEEEe-eCCCCeEEEEECC
Q psy7036          73 LDDVIETDAGLYKVKAKN-KMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQ-ADPAPTVIWSHSG  150 (254)
Q Consensus        73 i~~~~~~d~G~Y~C~~~~-~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~-~~~~~~~~W~~~~  150 (254)
                      |.+++.+|+|.|+|.+.+ ..+.....+.|.+.      .+|..........+..+..+.+.|.+. +.|.+.+.|++++
T Consensus        83 I~~v~~~D~G~Y~C~v~~~~~~~~~~~~~l~v~------~~P~~~~~~~~~~~~~~~~~~~~C~~~~~~P~~~i~W~~~~  156 (313)
T 4fqp_A           83 MFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVL------AKPQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDL  156 (313)
T ss_dssp             ECSCCGGGCEEEEEEEECSSSCEEEEEEEECCB------BCCEEEEEECCBCCCSSCEEEEEEEEEEEBSCCEEEEEETT
T ss_pred             ECcCChhhCEEEEEEEeeccCcceeeeeeeeec------cCCcceecccceEeecCceEEEEEEccCccCCcEEEeecCC
Confidence            999999999999998864 44555566666654      334433333344556788888999865 7889999999998


Q ss_pred             EecccCCcceEEEcCCCC-ceeeEEEEccCCCCCceeEEEEEEcCCCcceEEEEEEEecCCCCCCCCCCCCeeecCC-cc
Q psy7036         151 VQVKEDKRHKFSIDKDGH-SYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERP-VT  228 (254)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~p~~~~~~-~~  228 (254)
                      ..+....  ......++. ...+.|.|.....+|.|.|+|.|.|..+.......+.+...        .+|.+...+ ..
T Consensus       157 ~~~~~~~--~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~l~V~--------~~P~v~~~~~~~  226 (313)
T 4fqp_A          157 GGMPNTS--QVPGFLSGTVTVTSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVY--------YPPEVSISGYDN  226 (313)
T ss_dssp             CCEEEEE--EEECSSTTCEEEEEEEEECCCGGGTTCEEEEEEECTTSSSCEEEEEECCBC--------EEEEEEEECCCS
T ss_pred             ccccccc--eeeeecccccccceeeeecccccccCeeEEEEEEccCcCccceeeeecccc--------cCCccccccccc
Confidence            7764322  122222222 23457999999999999999999998876654444443321        255554433 33


Q ss_pred             ccccCCCCcEEEEEEEeccCCC-ceeC
Q psy7036         229 KQSDDDLNDIVIECRLVGEPEP-TISW  254 (254)
Q Consensus       229 ~~~~~g~~~~~l~C~~~~~p~p-~~~W  254 (254)
                      ..+.+|+ .+.|.|.+.|+|.| .++|
T Consensus       227 ~~~~~g~-~v~l~C~~~g~P~p~~v~W  252 (313)
T 4fqp_A          227 NWYLGQN-EATLTCDARSNPEPTGYNW  252 (313)
T ss_dssp             CEETTCC-CEEEEEEEEEESCCCEEEE
T ss_pred             eeecCCC-eEEEEEEecCCCCCcEEEE
Confidence            3445566 99999999999999 5888

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}

Probab=99.97  E-value=9.2e-29  Score=173.35  Aligned_cols=184  Identities=26%  Similarity=0.439  Sum_probs=143.9

Q ss_pred             CCCCeeEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEE
Q psy7036           6 DFAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYK   85 (254)
Q Consensus         6 ~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~   85 (254)
                      ..+|.|...+....+.+|++++|.|.+.+.|.+.+.|++++..+..... ++.....+.     .|.|.+++..|+|.|+
T Consensus         5 ~~~P~i~~~~~~~~~~~G~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~-~~~~~~~~~-----~L~i~~~~~~d~G~Y~   78 (192)
T 2iep_A            5 PKAPVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDT-RYSIRENGQ-----LLTILSVEDSDDGIYC   78 (192)
T ss_dssp             CEEEEESSCCCEEEEETTSCEEEECCEEEESCCEEEEEETTEECCTTCT-TEEEEGGGT-----EEEESSCCGGGCEEEE
T ss_pred             CCCceeecCccceeeeCCCcEEEEeeCCCCCCCeEEEEECCEEccccCc-cEEEcCCcc-----EEEEcCCCcccCeEEE
Confidence            3468888888888999999999999999888899999999998764322 222222222     6999999999999999


Q ss_pred             EEEEcCCCc-eEEEEEEEEeccccCCCCCccccCCCeeeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEEc
Q psy7036          86 VKAKNKMGE-VAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSID  164 (254)
Q Consensus        86 C~~~~~~~~-~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~  164 (254)
                      |.+.+..+. ......|.|..      +|.+...+....+..|+.+.|.|.+.+.|.+.+.|++++..+.....  ....
T Consensus        79 C~~~~~~~~~~~~~~~l~v~~------~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~--~~~~  150 (192)
T 2iep_A           79 CTANNGVGGAVESCGALQVKM------KPKITRPPINVKIIEGLKAVLPCTTMGNPKPSVSWIKGDSALRENSR--IAVL  150 (192)
T ss_dssp             EEEECSSSCCEEEEEEEEEEE------EEEEEECCCCEEEETTSCEEECCEEEEESCCEEEEEETTEECCCCSS--EEEC
T ss_pred             EEEEcCCCceeEeEEEEEEEe------CCccccCCcceEEeCCCcEEEEEEEeccCCceEEEEeCCEEccCCCc--EEEe
Confidence            999998876 45556676652      34444445566788999999999999999999999999998865543  2233


Q ss_pred             CCCCceeeEEEEccCCCCCceeEEEEEEcCCCcc-eEEEEEEEec
Q psy7036         165 KDGHSYFASLEIIDVTIEDAGKYKVTAKNELGES-NATISLNFDS  208 (254)
Q Consensus       165 ~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~-~~~~~~~v~~  208 (254)
                      .++     .|.|.+++.+|.|.|+|.|.|..|.. ...+.|.|..
T Consensus       151 ~~~-----~L~i~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~  190 (192)
T 2iep_A          151 ESG-----SLRIHNVQKEDAGQYRCVAKNSLGTAYSKLVKLEVEV  190 (192)
T ss_dssp             TTS-----CEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC
T ss_pred             cCC-----cEEEecCChhhCEEEEEEEEcCCCcEEEEEEEEEEEe
Confidence            333     69999999999999999999999876 4567777763

>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens}

Probab=99.97  E-value=7.6e-29  Score=187.87  Aligned_cols=231  Identities=13%  Similarity=0.208  Sum_probs=152.0

Q ss_pred             CeeEeCCCceeecCCCeEEEEEEEeeC-CCCceEEEeCCEE----eeeCC---cceEEEeecC--CcceEEEEEEeccCC
Q psy7036           9 PSFTQKPQLRQEDEGNRLIFECQLLCN-PKPDIVWFRGETQ----LSEDT---RTVMKTTPIG--TNKYLVALELDDVIE   78 (254)
Q Consensus         9 p~~~~~~~~~~v~~g~~v~l~C~~~~~-~~~~v~W~~~~~~----~~~~~---~~~~~~~~~~--~~~~~~~l~i~~~~~   78 (254)
                      ..|+..|....+.+|++++|.|.+.+. |.+.++|+|++..    +....   ..++......  .......|.|.+++.
T Consensus         4 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~p~~~v~W~k~~~~~~~~i~~~~~~~~~r~~~~~~~~~~~~~~~~L~I~~v~~   83 (327)
T 2wng_A            4 LQVIQPDKSVSVAAGESAILHCTVTSLIPVGPIQWFRGAGPARELIYNQKEGHFPRVTTVSESTKRENMDFSISISNITP   83 (327)
T ss_dssp             CCEECCCSEEEEETTSCEEECCEESCCCSCCCEEEEESCSTTCEEEEETTSSCCTTEEECC---CTTCCBCCEEECSCCG
T ss_pred             eEEEcCCCceEEecCCcEEEEEEccCcCCCceEEEEECCCCCceEEEEcCCCCcceeeeecccccccCceeEEEEccCcc
Confidence            457778889999999999999999886 8889999998743    11110   0112111110  012233799999999


Q ss_pred             CCCeEEEEEEEcCCCce-----EEEEEEEEeccccCCCCCccccCCCeeeecCCCeEEEEEEEeeCCCC--eEEEEECCE
Q psy7036          79 TDAGLYKVKAKNKMGEV-----AASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQADPAP--TVIWSHSGV  151 (254)
Q Consensus        79 ~d~G~Y~C~~~~~~~~~-----~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~--~~~W~~~~~  151 (254)
                      +|+|.|+|.+.|..+..     .....|.|...+   .+|.+. .+ ...+..|+.+.|.|.+.+.|++  .+.|++++.
T Consensus        84 ~D~G~Y~C~a~n~~~~~~~~~~~~~~~l~V~~~p---~~p~i~-~~-~~~~~~g~~~~l~C~~~g~p~~~~~v~W~k~g~  158 (327)
T 2wng_A           84 ADAGTYYCVKFRKGSPDTEFKSGAGTELSVRAKP---SAPVVS-GP-AARATPQHTVSFTCESHGFSPRDITLKWFKNGN  158 (327)
T ss_dssp             GGCEEEEEEEEESSTTCEEEEECCCEEEEEEBCC---CCCEEE-CC-SSCBCTTCEEEEEEEEEEEBSSCCEEEEEETTE
T ss_pred             ccCeEEEEEeecCCCcceeEeecCcEEEEEEecC---CCceee-cc-ccccCCCCEEEEEEEEeCccCCCcEEEEEECCE
Confidence            99999999999876541     124566665321   222222 22 2456789999999999988765  899999998


Q ss_pred             ecccCCcceEEEcCC-C-CceeeEEEEccCCCCCceeEEEEEEcCCCcc-eEEEEEEEecCCCCCCCCCCCCeeecCCcc
Q psy7036         152 QVKEDKRHKFSIDKD-G-HSYFASLEIIDVTIEDAGKYKVTAKNELGES-NATISLNFDSDDAPVPGEGTKPVFTERPVT  228 (254)
Q Consensus       152 ~~~~~~~~~~~~~~~-~-~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~p~~~~~~~~  228 (254)
                      .+..... ....... + ....+.|.|.....+|.|.|+|.|.|..+.. .......+...      ...+|.+...+..
T Consensus       159 ~l~~~~~-~~~~~~~~~~~~~~s~L~i~~~~~d~~g~Y~C~a~n~~~~~~~~~~~~~~~~~------v~~~P~i~~~~~~  231 (327)
T 2wng_A          159 ELSDFQT-NVDPVGESVSYSIHSTAKVVLTREDVHSQVICEVAHVTLQGDPLRGTANLSET------IRVPPTLEVTQQP  231 (327)
T ss_dssp             ECCCEEE-EEECSSCCSCEEEEEEEEEECCTTGGGCEEEEEEECTTSCSCCEEEEEEGGGT------BCBCCEEEEEEEC
T ss_pred             Ecccccc-ccccccCCCceEEEEEEEEechhcCcCceEEEEEeccccCCCcccceEEeccc------cCCCCEEEEecCC
Confidence            8764432 1112212 1 2234568888777778899999999988763 22222222211      1125666655444


Q ss_pred             ccccCCCCcEEEEEEEeccCC-C-ceeC
Q psy7036         229 KQSDDDLNDIVIECRLVGEPE-P-TISW  254 (254)
Q Consensus       229 ~~~~~g~~~~~l~C~~~~~p~-p-~~~W  254 (254)
                        +.+|+ .+.|.|.+.|.|+ + .+.|
T Consensus       232 --~~~G~-~v~l~C~~~g~~p~~~~v~W  256 (327)
T 2wng_A          232 --VRAEN-QVNVTCQVRKFYPQRLQLTW  256 (327)
T ss_dssp             --CSSTT-CCEEEEEEEEEBSSCEEEEE
T ss_pred             --cCCCC-cEEEEEEEccccCCCcEEEE
Confidence              67888 9999999999644 4 6888

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4

Probab=99.97  E-value=3e-28  Score=169.35  Aligned_cols=177  Identities=16%  Similarity=0.317  Sum_probs=137.0

Q ss_pred             CCeeEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEE
Q psy7036           8 APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVK   87 (254)
Q Consensus         8 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~   87 (254)
                      .|.|...|....+.+|++++|.|.+.+.|.+.+.|++++..+....+.......   ......|.|.+++..|+|.|+|.
T Consensus         2 ~~~~~~~p~~~~v~~G~~v~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~---~~~~~~L~i~~~~~~d~G~Y~C~   78 (182)
T 1rhf_A            2 GLKLMGAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSE---QHWIGFLSLKSVERSDAGRYWCQ   78 (182)
T ss_dssp             -----CCCEEEEEETTCCEEEEEEEESCSSCCEEEEETTEECCSSEEEEEEEET---TEEEEEEEESSCCGGGCEEEEEE
T ss_pred             CCEEEeCCcceEEeCCCcEEEEEEEeCCCCCeEEEEECCeecCCCCceEEEecC---CCceEEEEEeecCcccCeEEEEE
Confidence            477888899999999999999999998889999999999988766444333221   22345899999999999999999


Q ss_pred             EEcCCCc-eEEEEEEEEeccccCCCCCccccCCCeeeecCCCeEEEEEEEeeCCCC-eEEEEECCEecccCCcceEEEcC
Q psy7036          88 AKNKMGE-VAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQADPAP-TVIWSHSGVQVKEDKRHKFSIDK  165 (254)
Q Consensus        88 ~~~~~~~-~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~-~~~W~~~~~~~~~~~~~~~~~~~  165 (254)
                      +.+..+. ....+.|.|.      .+|.+...+....+..|+.+.|.|.+.+.|.+ .+.|++++..+.....      .
T Consensus        79 ~~~~~~~~~~~~~~l~V~------~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~~~~~~------~  146 (182)
T 1rhf_A           79 VEDGGETEISQPVWLTVE------GVPFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPAP------S  146 (182)
T ss_dssp             ESSCTTCEECCCEEEEEE------CSCEEEECCCCEEECTTCCEEEEEEEECSSSCCEEEEEETTEECSCSEE------S
T ss_pred             EEcCCCcEEEEEEEEEEe------cCCeEEecCcceEecCCCEEEEEeEecCCCCCCEEEEEcCCeECCCCCC------C
Confidence            9988664 3456777776      45666666666788899999999999999999 9999999988754321      1


Q ss_pred             CCCceeeEEEEccCCCCCceeEEEEEEcCCCcce-EEEEEEE
Q psy7036         166 DGHSYFASLEIIDVTIEDAGKYKVTAKNELGESN-ATISLNF  206 (254)
Q Consensus       166 ~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~-~~~~~~v  206 (254)
                      .     ..|.|.++  +|+|.|+|.|.|..|... .++.|.|
T Consensus       147 ~-----~~L~i~~~--~d~G~Y~C~a~N~~g~~~s~~~~l~V  181 (182)
T 1rhf_A          147 P-----SVLNVTGV--TQSTMFSCEAHNLKGLASSRTATVHL  181 (182)
T ss_dssp             S-----EEEEECCC--SSCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             c-----eEEEEecc--ccCeEEEEEEECCCCCcccceEEEEe
Confidence            1     27889887  589999999999998774 4666665

>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens}

Probab=99.97  E-value=2.2e-28  Score=196.51  Aligned_cols=235  Identities=14%  Similarity=0.206  Sum_probs=157.3

Q ss_pred             CCCCeeEeCCCceeecCCCeEEEEEEEeeC-CCC-ceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeE
Q psy7036           6 DFAPSFTQKPQLRQEDEGNRLIFECQLLCN-PKP-DIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGL   83 (254)
Q Consensus         6 ~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~-~~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~   83 (254)
                      ..+|.+...+....+.+|+.+.|.|.+.|. |.+ .++|++++..+........ ....+.....+.|.|.+++..| |.
T Consensus       217 ~~~P~v~~~~~~~~~~~G~~~~l~C~~~g~~P~p~~v~W~k~g~~~~~~~~~~~-~~~~g~~~~~s~L~i~~~~~~d-G~  294 (523)
T 2rcj_C          217 TKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPQPVTVSWNSGALTSGVHTFPAV-LQSSGLYSLSSVVTVPSSSLGT-QT  294 (523)
T ss_pred             CcCCEEEecCCCcccccCCceEEEEEEeceeCCCeEEEEecCCcccceEeCCcE-ecCCCcEEEEEEEEechhhcCC-ce
Confidence            345666544444467899999999999885 767 8999999987533211111 1112222334589999999999 99


Q ss_pred             EEEEEEcCCCceEEEEEEEEeccccCCCCCccccCCCeee-ecCCCeEEEEEEEeeCCC----CeEEEEECCEecccCCc
Q psy7036          84 YKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQ-EDDGKRLLFECRIQADPA----PTVIWSHSGVQVKEDKR  158 (254)
Q Consensus        84 Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~-~~~g~~~~l~C~~~~~~~----~~~~W~~~~~~~~~~~~  158 (254)
                      |+|.|.|..|.......|.|..     .|..+...+.... +.+|+.+.|.|.+.+.++    +.+.|+|++..+.....
T Consensus       295 Y~C~a~n~~g~~~~~~~l~v~~-----~P~~~~~~p~~~~~v~~g~~~~l~C~~~g~~p~~~~~~v~W~k~g~~l~~~~~  369 (523)
T 2rcj_C          295 YICNVNHKPSNTKVDKRVEPLS-----LPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPQVKFNWYVDGVQVHNAKT  369 (523)
T ss_pred             EEEEEEeCCCCcceEEecCCCc-----CceEEecCCCchhhcccCCceEEEEEEecccCCCCceEEEEEECCeEccCCcc
Confidence            9999999998866666665532     1222222222222 678999999999998653    48999999998865543


Q ss_pred             ceEEEcCCCC-ceeeEEEEccCCCCCceeEEEEEEcCCCcceEEEEEEEecCCCCCCCCCCCCeeecCCccccccCCCCc
Q psy7036         159 HKFSIDKDGH-SYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLND  237 (254)
Q Consensus       159 ~~~~~~~~~~-~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~  237 (254)
                      .......++. ...+.|.|.++..+|.|.|+|.|.|..+.......+.+...      ...+|.+...+.......++ .
T Consensus       370 ~~~~~~~~g~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~~~~~------~~~~P~v~~~~~~~~~~~~~-~  442 (523)
T 2rcj_C          370 KPREQQYNSTYRVVSVLTVLHQNWLDGKEYKCKVSNKALPAPIEKTISKAKG------QPREPQVYTLPPSREEMTKN-Q  442 (523)
T ss_pred             CCceecCCCcEEEEEEEEECHHHhcCCCeEEEEEeCCCCCCceeEEEEcccC------CCCCCEEEEeCCChHHccCC-c
Confidence            2222223332 34467999999999999999999998777655544443110      11355555444333445677 7


Q ss_pred             EEEEEEEeccCCC--ceeC
Q psy7036         238 IVIECRLVGEPEP--TISW  254 (254)
Q Consensus       238 ~~l~C~~~~~p~p--~~~W  254 (254)
                      +.|.|.+.|.|+|  .++|
T Consensus       443 ~~l~C~~~g~~p~~~~v~W  461 (523)
T 2rcj_C          443 VSLTCLVKGFYPSDIAVEW  461 (523)
T ss_pred             eEEEEEEEeeECCCCEEEE
Confidence            9999999998766  7888

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A

Probab=99.97  E-value=6.7e-29  Score=176.72  Aligned_cols=192  Identities=24%  Similarity=0.460  Sum_probs=142.7

Q ss_pred             CCCCCeeEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcc--eEEEeecCCcceEEEEEEeccCCCCCe
Q psy7036           5 EDFAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRT--VMKTTPIGTNKYLVALELDDVIETDAG   82 (254)
Q Consensus         5 ~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~i~~~~~~d~G   82 (254)
                      ...+|.|...|....+.+|++++|.|.+.+.|.+.+.|++++..+......  ........+......|.|.+++..|+|
T Consensus         6 ~~~pp~i~~~p~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G   85 (212)
T 2v9r_A            6 EDFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEG   85 (212)
T ss_dssp             CCEEEEEEECCCCEEECTTCCEEECCEEEEESCCEEEEEETTEECCCTTTCTTCSEEECTTSCEEESSCCCCSSCCCSCE
T ss_pred             ccCCcceecCCCceEEeCCCcEEEEEEcCCCCCCEEEEEECCEEeeccccccccceEEecCCcEEEEEEEecCCCcccCe
Confidence            345789999999999999999999999998899999999999987643211  011111122222224566778999999


Q ss_pred             EEEEEEEcCCCce-EEEEEEEEeccccCCCCCccccCCCeeeecCCCeEEEEEEE-eeCCCCeEEEEECCEecccCCcce
Q psy7036          83 LYKVKAKNKMGEV-AASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRI-QADPAPTVIWSHSGVQVKEDKRHK  160 (254)
Q Consensus        83 ~Y~C~~~~~~~~~-~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~~~~~~~~W~~~~~~~~~~~~~~  160 (254)
                      .|+|.+.|..+.. .....|.|..     .++.+...+....+..|+.+.|.|.+ .+.|.+.+.|++++..+...... 
T Consensus        86 ~Y~C~~~n~~g~~~~~~~~l~V~~-----~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~~~~~~l~~~~~~-  159 (212)
T 2v9r_A           86 VYVCVARNYLGEAVSHDASLEVAI-----LRDDFRQNPSDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDER-  159 (212)
T ss_dssp             EEEEEEEETTEEEECCCEEEEECE-----ECSSCSBCCCCEEEETTSCEEEECBCCCEESCCEEEEEETTEEECTTSTT-
T ss_pred             EEEEEEECCCCceeecceEEEEEe-----ccccceeCCCceEecCCCcEEEEEecCCCCCCCEEEEEECCccCCCCcce-
Confidence            9999999987754 3456666643     23334445556678899999999998 88999999999999988754432 


Q ss_pred             EEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcceE-EEEEEEec
Q psy7036         161 FSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNA-TISLNFDS  208 (254)
Q Consensus       161 ~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~-~~~~~v~~  208 (254)
                      +... ++     .|.|.++..+|.|.|+|.|.|..|.... .+.|.|..
T Consensus       160 ~~~~-~~-----~L~i~~~~~~d~G~Y~C~a~N~~g~~~s~~~~l~V~~  202 (212)
T 2v9r_A          160 ITIR-GG-----KLMITYTRKSDAGKYVCVGTNMVGERESEVAELTVLE  202 (212)
T ss_dssp             EEEE-TT-----EEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC
T ss_pred             EEcc-CC-----eEEEeeCCHhhCeeEEEEEecccCceecceEEEEEEe
Confidence            2222 22     7999999999999999999999987644 47777774

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*

Probab=99.97  E-value=1.1e-29  Score=196.88  Aligned_cols=224  Identities=19%  Similarity=0.260  Sum_probs=158.0

Q ss_pred             CCCeeEeCCCceeecCCCeEEEEEEEeeCC---CCceEEEeCCEEeeeCC---cceEEEeecCCcceEEEEEEeccCCCC
Q psy7036           7 FAPSFTQKPQLRQEDEGNRLIFECQLLCNP---KPDIVWFRGETQLSEDT---RTVMKTTPIGTNKYLVALELDDVIETD   80 (254)
Q Consensus         7 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~---~~~v~W~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~i~~~~~~d   80 (254)
                      .+|.+...+....+.+|+.++|.|.+.+.+   .+.+.|++++..+....   ..+......+      .|.|.+++..|
T Consensus       102 ~~p~~~~~~~~~~v~~G~~v~l~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~------~L~i~~v~~~d  175 (388)
T 2v5m_A          102 VAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSG------ELHIREVGPED  175 (388)
T ss_dssp             CCCCCCCBCCCEEEETTSCEEECCBCCTTTTTTEEEEEEEETTCCEECSSSCBTTTEEECTTS------CEEESSCCGGG
T ss_pred             cccccccCccceeeecCCcEEEEEECcCCCCCCcceEEEEeCCCcccccccCCCCcEEEccCC------cEEEecCCccc
Confidence            456666667777899999999999997654   37899999987664321   1122222222      69999999999


Q ss_pred             C-eEEEEEEEcCCCceE-E---EEEEEEeccccCCCCCcc-ccCCCeeeecCCCeEEEEEEEeeCCCCeEEEEECCEecc
Q psy7036          81 A-GLYKVKAKNKMGEVA-A---SINLNFSREQIDGLAPTF-LKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVK  154 (254)
Q Consensus        81 ~-G~Y~C~~~~~~~~~~-~---~~~l~v~~~~~~~~~~~~-~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~  154 (254)
                      + |.|+|.+.+..+... .   ...|.|...... ..|.+ ........+..|+.+.|.|.+.+.|.+.+.|++++..+.
T Consensus       176 ~~G~Y~C~~~n~~~~~~~~~~~~~~l~v~~~~~~-~~p~~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~  254 (388)
T 2v5m_A          176 GYKSYQCRTKHRLTGETRLSATKGRLVITEPISS-SAPRTPALVQKPLELMVAHTISLLCPAQGFPAPSFRWYKFIEGTT  254 (388)
T ss_dssp             GGCCEEEEEEETTTCCEEECSSCBCEEEECCCSC-EEEECCSSCCCCEEEETTSCEEECCCCEEESCCEEEEEEECTTSS
T ss_pred             cCeeEEEEeccCCCCceeeccccceEEEecCCcC-CCCcCccccCCceEEeeCCcEEEEEECCCCCCCEEEEEecCCCCc
Confidence            9 999999998764322 1   124455421110 01111 112223457789999999999999999999999754321


Q ss_pred             cC----CcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcceEEEEEEEecCCCCCCCCCCCCeeecCCcccc
Q psy7036         155 ED----KRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQ  230 (254)
Q Consensus       155 ~~----~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~  230 (254)
                      ..    ...++... +     ..|.|.+++.+|.|.|+|.|.|..|.....+.|.|..          +|.+...|....
T Consensus       255 ~~~~~~~~~~~~~~-~-----~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~----------~p~~~~~~~~~~  318 (388)
T 2v5m_A          255 RKQAVVLNDRVKQV-S-----GTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTA----------PLSAKIDPPTQT  318 (388)
T ss_dssp             CEEECCCSSSEEEE-T-----TEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEEE----------EEEEEEESSEEE
T ss_pred             ccccccccCceecc-c-----CEEEECcCCHHHCeEEEEEEecCCCceeEEEEEEEeC----------CCccccCCCcEE
Confidence            10    11111111 2     2799999999999999999999999888888888874          555666666777


Q ss_pred             ccCCCCcEEEEEEEeccCCCceeC
Q psy7036         231 SDDDLNDIVIECRLVGEPEPTISW  254 (254)
Q Consensus       231 ~~~g~~~~~l~C~~~~~p~p~~~W  254 (254)
                      +.+|+ .+.|.|.+.|+|.|.++|
T Consensus       319 v~~g~-~~~l~C~~~g~p~p~i~W  341 (388)
T 2v5m_A          319 VDFGR-PAVFTCQYTGNPIKTVSW  341 (388)
T ss_dssp             ECTTS-CEEEEEEEEEECCCEEEE
T ss_pred             ecCCC-CEEEEEEeccccCCeEEE
Confidence            88999 999999999999999998

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A

Probab=99.96  E-value=1.4e-27  Score=185.07  Aligned_cols=186  Identities=23%  Similarity=0.412  Sum_probs=145.2

Q ss_pred             CCeeEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeC--CEEeeeC-----CcceEEEeecCCcceEEEEEEeccCCCC
Q psy7036           8 APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRG--ETQLSED-----TRTVMKTTPIGTNKYLVALELDDVIETD   80 (254)
Q Consensus         8 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~--~~~~~~~-----~~~~~~~~~~~~~~~~~~l~i~~~~~~d   80 (254)
                      +|.|.. +....+.+|++++|.|.+.|.|.+.++|+|+  |..+...     .++.+.  ..   .....|.|.+++.+|
T Consensus         1 ~P~i~~-~~~~~~~~G~~v~l~C~~~g~p~p~v~W~~~~~g~~~~~~~~~~~~~~~~~--~~---~~~~~L~i~~v~~~D   74 (389)
T 2jll_A            1 QPHIIQ-LKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVK--GQ---HGSSSLHIKDVKLSD   74 (389)
T ss_dssp             CCEEEE-CCCEEEETTSEEEEEEEEECSSCCEEEEEETTTTEEECC--CCSSSSEEEE--EC---SSEEEEEEESCCGGG
T ss_pred             CCeEEe-cCceEEeCCCeEEEEEEeecccCCeEEEEeCCCCceeccCcCCCCCeEEEe--cc---CCcceEEEcccChhh
Confidence            477776 5566788999999999999999999999999  8887642     233222  11   223489999999999


Q ss_pred             CeEEEEEEEcCCCceEEEEEEEEeccccCCCCCccccCCCeeeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcce
Q psy7036          81 AGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHK  160 (254)
Q Consensus        81 ~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~  160 (254)
                      +|.|+|.+.|..|.....+.|.|..      +|.+........+..|+.+.|.|.+.+.|.+.+.|++++..+.......
T Consensus        75 ~G~Y~C~a~n~~g~~~~~~~l~V~~------~P~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~i~W~~~g~~l~~~~~~~  148 (389)
T 2jll_A           75 SGRYDCEAASRIGGHQKSMYLDIEY------APKFISNQTIYYSWEGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTN  148 (389)
T ss_dssp             CEEEEEEEECSSCEEEEEEEEEEEE------EEEECCSCCEEEECTTCCEEEEECEEEESCCEEEEEETTEESSCTTCTT
T ss_pred             CEEEEEEEEeCCCCcceEEEEEEEe------CCEEecCcceEEeccCCEEEEEEEEEecCCCeEEEEECCccCCcccCce
Confidence            9999999999999888888888873      4444444444567889999999999999999999999999887654323


Q ss_pred             EEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcceEEEEEEEe
Q psy7036         161 FSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFD  207 (254)
Q Consensus       161 ~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~v~  207 (254)
                      +....++.  .+.|.|.++..+|.|.|+|.|.|..|.......+.+.
T Consensus       149 ~~~~~~~~--~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~  193 (389)
T 2jll_A          149 LKTYSTGR--KMILEIAPTSDNDFGRYNCTATNHIGTRFQEYILALA  193 (389)
T ss_dssp             EEEEECSS--CEEEEECCCSTTSSEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             EEEeccCC--EEEEEECCCChhhCEEEEEEEEcCCCcEEEEEEEEec
Confidence            33222221  1379999999999999999999999988777777664

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*

Probab=99.96  E-value=1.8e-28  Score=187.40  Aligned_cols=225  Identities=12%  Similarity=0.211  Sum_probs=148.6

Q ss_pred             CCeeEeC-CCceeecCCCeEEEEEEEeeCC-----------CCceEEEeCCE------Eee-eCCcceEEEeecCCcceE
Q psy7036           8 APSFTQK-PQLRQEDEGNRLIFECQLLCNP-----------KPDIVWFRGET------QLS-EDTRTVMKTTPIGTNKYL   68 (254)
Q Consensus         8 ~p~~~~~-~~~~~v~~g~~v~l~C~~~~~~-----------~~~v~W~~~~~------~~~-~~~~~~~~~~~~~~~~~~   68 (254)
                      .+.+... ...+.+.+|+++.|.|.+.+.|           .+.+.|+|++.      .+. .....++...  +.    
T Consensus         6 c~~~~~~~~~~v~v~~G~~v~L~C~~~~~p~~~~ys~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~--~~----   79 (349)
T 4dep_C            6 CDDWGLDTMRQIQVFEDEPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKE--KD----   79 (349)
T ss_dssp             CEEEEECCCCCCEEETTSCEEEECTCCCCCSSSCHHHHHHTTCEEEEEEEESSCCCEEECCCCCGGGCEEEE--TT----
T ss_pred             ccccccceeeeEEEecCCeEEEEccccccccccccccccCCCceEEEEECCCCCcccccccccccCceEeec--CC----
Confidence            3444443 5667899999999999998655           48999999873      111 0112222211  11    


Q ss_pred             EEEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEEeccccCCCCCccccCCCeeeecCCCeEEEEEEE-----eeCCCCe
Q psy7036          69 VALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRI-----QADPAPT  143 (254)
Q Consensus        69 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-----~~~~~~~  143 (254)
                       .|.|.+++.+|+|.|+|.+.|..+.....+.|.|...+..  .+.....+....+..|+.+.|.|.+     .+.|.+.
T Consensus        80 -~L~i~~~~~~D~G~Y~C~a~n~~~~~~~~~~l~V~~~~~~--~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~g~p~~~  156 (349)
T 4dep_C           80 -VLWFRPTLLNDTGNYTCMLRNTTYCSKVAFPLEVVQKDSC--FNSPMKLPVHKLYIEYGIQRITCPNVDGYFPSSVKPT  156 (349)
T ss_dssp             -EEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEECCCTT--SCCSCCCCEEEEETTCSEEEEECCSCTTSSCTTSCCE
T ss_pred             -EEEEccCChhhCEEEEEEEecCCceEEEEEEEEEecCCcc--cCcccccCcceeeecCccEEEEcCCCcccccCCCCce
Confidence             7999999999999999999999888888888888742211  1111122334567889999999984     6788999


Q ss_pred             EEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCC-Ccc---eEEEEEEEecCCCCCCCCCCC
Q psy7036         144 VIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNEL-GES---NATISLNFDSDDAPVPGEGTK  219 (254)
Q Consensus       144 ~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~-~~~---~~~~~~~v~~~~~~~~~~~~~  219 (254)
                      +.|+|++..+...  ..+....      ..|.|.+++.+|+|.|+|.|.|.. |..   ...+.|.|.....    ...+
T Consensus       157 v~W~k~~~~l~~~--~~~~~~~------~~L~i~~v~~~d~G~Y~C~a~n~~~g~~~~~~~~~~l~v~~~~~----~~~~  224 (349)
T 4dep_C          157 ITWYMGCYKIQNF--NNVIPEG------MNLSFLIALISNNGNYTCVVTYPENGRTFHLTRTLTVKVVGSPK----NAVP  224 (349)
T ss_dssp             EEEEETTEECCSC--SSEEEET------TEEEEESCCGGGCEEEEEEEEEEETTEEEEEEEEEEEEEECCGG----GCCS
T ss_pred             EEEeeCCEECCCc--cceeecC------CEEEEeeeeecCCcEEEEEEEEeeCCEEEEEEEEEEEEEEccCC----CCCC
Confidence            9999999988543  2222222      279999999999999999999986 443   4566666653211    1124


Q ss_pred             CeeecCCccc--cccCCCCcEEEEEEEe----ccCCCceeC
Q psy7036         220 PVFTERPVTK--QSDDDLNDIVIECRLV----GEPEPTISW  254 (254)
Q Consensus       220 p~~~~~~~~~--~~~~g~~~~~l~C~~~----~~p~p~~~W  254 (254)
                      |.+...+...  .+.+|+ .+.|.|.+.    |.|.|.++|
T Consensus       225 p~i~~~~~~~~~~v~~G~-~v~l~C~~~~~~~g~p~p~v~W  264 (349)
T 4dep_C          225 PVIHSPNDHVVYEKEPGE-ELLIPCTVYFSFLMDSRNEVWW  264 (349)
T ss_dssp             CEEC-----------------CCCEEEEECCCTTCCCEEEE
T ss_pred             CeEecCCCceeEEEecCC-cEEEEEEEEEccCCCCCCEEEE
Confidence            6665554332  677888 999999998    578899998

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A

Probab=99.96  E-value=1.2e-28  Score=190.64  Aligned_cols=227  Identities=20%  Similarity=0.334  Sum_probs=161.3

Q ss_pred             CCCeeEeCCCceee---cCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCC-CCCe
Q psy7036           7 FAPSFTQKPQLRQE---DEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIE-TDAG   82 (254)
Q Consensus         7 ~~p~~~~~~~~~~v---~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~-~d~G   82 (254)
                      .+|.|...|....+   .+|++++|.|.+.|.|.+.+.|+|+|..+......++... .+      .|.|.++.. .|+|
T Consensus         3 ~~P~~~~~p~~~~~~~~~~g~~v~l~C~~~g~p~~~v~W~k~g~~~~~~~~~~~~~~-~~------~L~i~~~~~~~D~G   75 (382)
T 1cs6_A            3 YGPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLV-AG------DLVISNPVKAKDAG   75 (382)
T ss_dssp             EEEEEEECCCCEEEETTCSCCEEEECCEEEEESCCEEEEEETTEECCCSTTSSEEEE-TT------EEEEESCCHHHHCE
T ss_pred             CCCEEEECCCcEEEecCCCCCcEEEEEEecCCCCCEEEEEECCEECCcCCCccEEee-CC------eEEEecccccccCE
Confidence            47899999988776   7899999999999999999999999999876543333322 11      699999997 9999


Q ss_pred             EEEEEEEcCCCceE-EEEEEEEeccccCCCCCccccCCCeeeecCCCeEEEEEEE-eeCCCCeEEEEECCEecccCCcce
Q psy7036          83 LYKVKAKNKMGEVA-ASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRI-QADPAPTVIWSHSGVQVKEDKRHK  160 (254)
Q Consensus        83 ~Y~C~~~~~~~~~~-~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~~~~~~~~W~~~~~~~~~~~~~~  160 (254)
                      .|+|.+.|..|... ....|.|...     +...........+.+|+.+.|.|.+ .+.|.+.+.|++++..+......+
T Consensus        76 ~Y~C~a~n~~g~~~s~~~~l~v~~~-----~~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~i~W~~~~~~~~~~~~~~  150 (382)
T 1cs6_A           76 SYQCVATNARGTVVSREASLRFGFL-----QEFSAEERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGR  150 (382)
T ss_dssp             EEEEEEEETTEEEECCCEEEEEEEE-----CCCCSSCCCCEEEETTSCEEECCCCCSEESCCEEEEEESSTTCBCCCCSS
T ss_pred             EEEEEEEcCCcEEEecceEEEeecc-----ccccccCCCceEEecCCcEEEEeCCCCCCCCcEEEEEECCCccccccCce
Confidence            99999999887643 2455555421     1111122345678899999999995 456788999999987653222222


Q ss_pred             EEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcceE-----EEEEEEecCCCCCCCCCCCCeeec-CCccccccCC
Q psy7036         161 FSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNA-----TISLNFDSDDAPVPGEGTKPVFTE-RPVTKQSDDD  234 (254)
Q Consensus       161 ~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~~~p~~~~-~~~~~~~~~g  234 (254)
                      .....+.    ..|.|.+++.+|.|.|+|.+.|..+....     ...+.+.....    ...+|.+.. .+....+.+|
T Consensus       151 ~~~~~~~----~~L~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~s~~~~l~v~~~~~----~~~~P~~~~~~~~~~~~~~G  222 (382)
T 1cs6_A          151 RFVSQTT----GNLYIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDA----RQYAPSIKAKFPADTYALTG  222 (382)
T ss_dssp             EEECTTT----CCEEESSCCGGGCEEEEEEEEEEETTEEEEEECCCEEEEEESCCC----CCEEEEEEECCCSEEEEETT
T ss_pred             EEEecCc----eEEEEEeeCcccCeeEEEEEEEccccccceeEccceeeccchhhc----ccCCCceeccCCCceEEeCC
Confidence            2222221    16999999999999999999998754322     23444432110    112344443 3556678889


Q ss_pred             CCcEEEEEEEeccCCCceeC
Q psy7036         235 LNDIVIECRLVGEPEPTISW  254 (254)
Q Consensus       235 ~~~~~l~C~~~~~p~p~~~W  254 (254)
                      + .+.|.|.+.|.|.|.+.|
T Consensus       223 ~-~v~l~C~~~g~p~~~i~W  241 (382)
T 1cs6_A          223 Q-MVTLECFAFGNPVPQIKW  241 (382)
T ss_dssp             C-CEEEECEEEEESCCEEEE
T ss_pred             C-eEEEEEEEccCCCCEEEE
Confidence            9 999999999999999998

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A

Probab=99.96  E-value=3e-28  Score=200.26  Aligned_cols=206  Identities=19%  Similarity=0.362  Sum_probs=157.4

Q ss_pred             EeCCCceeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcC
Q psy7036          12 TQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNK   91 (254)
Q Consensus        12 ~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~   91 (254)
                      ...+....+.+|+.++|.|.+.|.|.+.++|+++|..+....                .|.|.+++..|+|.|+|.+.|.
T Consensus       385 ~~~~~~~~~~~g~~~~l~C~~~g~p~~~i~W~~~g~~~~~~~----------------~L~i~~~~~~d~G~Y~C~a~n~  448 (642)
T 1e07_A          385 TISPSYTYYRPGVNLSLSCHAASNPPAQYSWLIDGNIQQHTQ----------------ELFISNITEKNSGLYTCQANNS  448 (642)
T ss_pred             eecCCceEecCCCcEEEEEEcCccCCCeEEEEECCEEcCCCc----------------eEEEccCChhhCeEEEEEEEcC
Confidence            445666778999999999999999999999999998765321                5999999999999999999999


Q ss_pred             CCceEEE--EEEEEeccccCCCCCccccCCCeeeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCCCCc
Q psy7036          92 MGEVAAS--INLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHS  169 (254)
Q Consensus        92 ~~~~~~~--~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~  169 (254)
                      .|....+  +.+.|....   .+|.+. ......+..|+.+.|.|.+. .+.+.+.|++++..+....+..+  ..++  
T Consensus       449 ~g~~~~s~~~~v~v~~~~---~~p~i~-~~~~~~v~~g~~v~l~C~~~-~~~~~i~W~~~g~~l~~~~~~~~--~~~~--  519 (642)
T 1e07_A          449 ASGHSRTTVKTITVSAEL---PKPSIS-SNNSKPVEDKDAVAFTCEPE-AQNTTYLWWVNGQSLPVSPRLQL--SNGN--  519 (642)
T ss_pred             CCCCcccceEEEEEeccC---CCceEe-cCCceeecCCCeEEEEEECC-CCCcEEEEEECCEeCCCCCcEEE--cCCC--
Confidence            8765544  444443210   233332 23345677899999999997 47889999999998876554333  2222  


Q ss_pred             eeeEEEEccCCCCCceeEEEEEEcCCCcce-EEEEEEEecCCCCCCCCCCCCeeecCCccccccCCCCcEEEEEEEeccC
Q psy7036         170 YFASLEIIDVTIEDAGKYKVTAKNELGESN-ATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLVGEP  248 (254)
Q Consensus       170 ~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~l~C~~~~~p  248 (254)
                        ..|.|.++..+|.|.|+|.|.|..|... ..+.|.|...         ++.+...+....+.+|+ .+.|.|.+.|.|
T Consensus       520 --~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~~---------p~~~~~~~~~~~v~~g~-~~~l~C~~~g~p  587 (642)
T 1e07_A          520 --RTLTLFNVTRNDARAYVCGIQNSVSANRSDPVTLDVLYG---------PDTPIISPPDSSYLSGA-NLNLSCHSASNP  587 (642)
T ss_pred             --cEEEEeecChhcCceEEEEeEcCCCCccCCCEEEEEEeC---------CCcceecCCceeEEcCC-cEEEEEEeccCC
Confidence              2799999999999999999999998753 3577777642         22334445566788899 999999999999


Q ss_pred             CCceeC
Q psy7036         249 EPTISW  254 (254)
Q Consensus       249 ~p~~~W  254 (254)
                      .|.++|
T Consensus       588 ~p~v~W  593 (642)
T 1e07_A          588 SPQYSW  593 (642)
T ss_pred             CCeEEE
Confidence            999999

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R

Probab=99.96  E-value=5.6e-30  Score=193.10  Aligned_cols=214  Identities=17%  Similarity=0.253  Sum_probs=154.6

Q ss_pred             CceeecCCCeEEEEEEEeeCC-CCceEEEeCCEEeee--CCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcCC
Q psy7036          16 QLRQEDEGNRLIFECQLLCNP-KPDIVWFRGETQLSE--DTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKM   92 (254)
Q Consensus        16 ~~~~v~~g~~v~l~C~~~~~~-~~~v~W~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~   92 (254)
                      ..+.+.+|+++.|.|.+.+.+ .+.++|+|++..+..  ....++...  +.     .|.|.+++.+|+|.|+|.+.|..
T Consensus        13 ~~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~--~~-----~L~i~~v~~~D~G~Y~C~a~n~~   85 (315)
T 1itb_B           13 IILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQH--KE-----KLWFVPAKVEDSGHYYCVVRNSS   85 (315)
T ss_dssp             CCCEEETTSCCCCBCCCCSCCCSSCCCEECTTSCSCSCCCTTSSSEEC--SS-----BEECTTCCGGGCSCCEECCCSSS
T ss_pred             eEEEEcCCCcEEEEeeccCcCCCceEEEEeCCCcCccccccCCcEecc--CC-----eEEECCCChhhCEEEEEEEeCCc
Confidence            356789999999999998876 789999999864321  112222211  11     69999999999999999999988


Q ss_pred             CceEEEEEEEEeccccCCCCCccccCC---CeeeecCCCeEEEEEEE------eeCCCCeEEEEECCEecccCCcceEEE
Q psy7036          93 GEVAASINLNFSREQIDGLAPTFLKKP---SIRQEDDGKRLLFECRI------QADPAPTVIWSHSGVQVKEDKRHKFSI  163 (254)
Q Consensus        93 ~~~~~~~~l~v~~~~~~~~~~~~~~~~---~~~~~~~g~~~~l~C~~------~~~~~~~~~W~~~~~~~~~~~~~~~~~  163 (254)
                      +.....+.+.+..     .+|.+...+   ....+..|+.+.|.|.+      .+.|.+.+.|++++..+..... ++..
T Consensus        86 g~~~~~~~v~v~~-----~~p~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~g~p~~~i~W~k~~~~l~~~~~-~~~~  159 (315)
T 1itb_B           86 YCLRIKISAKFVE-----NEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNI-HFSG  159 (315)
T ss_dssp             CCCCEECCCEEEC-----CCTTSSSCGGGEEEEEEETTSCEEEECSSCTTTCTTTTCCCCCEEEETTEECCCCSS-SEEE
T ss_pred             eEEEEEEEEEEeC-----CCCCcccccccccceEEecCCCeEEEEecccccccCCCCCCEEEEEECCEECCCccc-eEee
Confidence            8766666665542     233322111   23457789999999998      7889999999999998865332 2222


Q ss_pred             cCCCCceeeEEEEccCCCCCceeEEEEEE-cCCCcc---eEEEEEEEecCCCCCCCCCCCCeeecCCcc-ccccCCCCcE
Q psy7036         164 DKDGHSYFASLEIIDVTIEDAGKYKVTAK-NELGES---NATISLNFDSDDAPVPGEGTKPVFTERPVT-KQSDDDLNDI  238 (254)
Q Consensus       164 ~~~~~~~~~~l~i~~~~~~d~G~y~C~~~-~~~~~~---~~~~~~~v~~~~~~~~~~~~~p~~~~~~~~-~~~~~g~~~~  238 (254)
                      . ++     .|.|.+++.+|+|.|+|.+. |..|..   ...+.+.+....     ...+|.+...+.. ..+.+|+ .+
T Consensus       160 ~-~~-----~L~i~~v~~~d~G~Y~C~a~~n~~g~~~~~~~~~~~~~~~~~-----~~~~P~~~~~~~~~~~~~~g~-~v  227 (315)
T 1itb_B          160 V-KD-----RLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFITLEEN-----KPTRPVIVSPANETMEVDLGS-QI  227 (315)
T ss_dssp             E-TT-----EEEESSCCGGGCEEEEEEEEEEETTEEEEEEEEEEEEEECCC-----CCCCCEECSCCSEEEECCSSS-CE
T ss_pred             c-Cc-----eEEEEeceehhCcEEEEEEEcCCCCcEEEEEEEEEEEEecCC-----CCCCCEEecCCCCcEEEeCCC-cE
Confidence            2 22     79999999999999999999 777765   334444333211     1236777665543 4678898 99


Q ss_pred             EEEEEEeccCCCceeC
Q psy7036         239 VIECRLVGEPEPTISW  254 (254)
Q Consensus       239 ~l~C~~~~~p~p~~~W  254 (254)
                      .|.|.+.|.|.|.++|
T Consensus       228 ~l~C~~~g~P~p~i~W  243 (315)
T 1itb_B          228 QLICNVTGQLSDIAYW  243 (315)
T ss_dssp             EEEEEEEECTTSEEEE
T ss_pred             EEEEEEecCCCCeeEE
Confidence            9999999999999998

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}

Probab=99.96  E-value=2.9e-28  Score=183.40  Aligned_cols=226  Identities=15%  Similarity=0.235  Sum_probs=156.2

Q ss_pred             ceeecCCCeEEEEEEEe-eCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcCCCce
Q psy7036          17 LRQEDEGNRLIFECQLL-CNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGEV   95 (254)
Q Consensus        17 ~~~v~~g~~v~l~C~~~-~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~   95 (254)
                      .+.+.+|+.+.|.|... +.|.+.++|+|++..+....++.+...  +   ....|.|.+++.+|+|.|+|.+.|..|..
T Consensus        10 ~~~v~eg~~v~l~~~~~~~~p~~~v~W~k~~~~i~~~~~~~~~~~--~---~~~~L~I~~~~~~D~G~Y~C~~~n~~g~~   84 (312)
T 2y23_A           10 VVNVDDDGVISLNFECDKMTPKSEFSWSKDYVSTEDSPRLEVESK--G---NKTKMTFKDLGMDDLGIYSCDVTDTDGIA   84 (312)
T ss_dssp             EEEECTTCCEEEEEECSSCCTTCCEEEEETTEECTTCTTEEEEEE--T---TEEEEEESSCCGGGCEEEEEEESSSCCCC
T ss_pred             eEEEecCCeEEEEEEEeCCCCCcEEEEEECCEECCCCCCEEEEEe--C---CEEEEEECcCCccCCEEEEEEEEeCCCcE
Confidence            45788999999999885 478899999999999886666555432  1   12389999999999999999999988754


Q ss_pred             EEEEEEEEeccccCC------CCCccccCCC-eeeecCCCeEEEEEEEe-eCCCCeEEEEECCEecccCCcceEEEcCCC
Q psy7036          96 AASINLNFSREQIDG------LAPTFLKKPS-IRQEDDGKRLLFECRIQ-ADPAPTVIWSHSGVQVKEDKRHKFSIDKDG  167 (254)
Q Consensus        96 ~~~~~l~v~~~~~~~------~~~~~~~~~~-~~~~~~g~~~~l~C~~~-~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~  167 (254)
                      . +..+.|.......      .+|.+..... ...+.+|+.+.|.|.+. +.|.+.+.|++++..+.......+......
T Consensus        85 ~-s~~l~v~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~i~~~~~~~~~~~~~~  163 (312)
T 2y23_A           85 S-SYLIDEEELKRLLALSHEHKFPTVPVKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNT  163 (312)
T ss_dssp             E-EEEECHHHHHHHHHHHHHHHSCBCCEEEEEEEEECSSSCEEEEEEESCCCSSCEEEEEETTEEECSSSSCEEEEETTT
T ss_pred             E-EEEEEEeeeeeeecccccCCCCccccccCCceEEeeCCCEEEEEEEEeCCCCCEEEEEECCEECeeCCcEEEEEccCC
Confidence            4 4555553211000      0333333222 56788999999999998 889999999999999877655554443222


Q ss_pred             CceeeEEEEccCCCCCceeEEEEEEcCCCcceEEEEEEEecCC-------CCC----CCCCCCCeeecCCccccccCCCC
Q psy7036         168 HSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFDSDD-------APV----PGEGTKPVFTERPVTKQSDDDLN  236 (254)
Q Consensus       168 ~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~v~~~~-------~~~----~~~~~~p~~~~~~~~~~~~~g~~  236 (254)
                      .  ...|.|.+++.+|.|.|+|.+.+........  +.+....       ++.    .....+|.+... ....+.+|+ 
T Consensus       164 ~--~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~~~v~~G~-  237 (312)
T 2y23_A          164 G--IIEMFMEKLQDEDEGTYTFQLQDGKATNHST--VVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEY-LSWEVTGEC-  237 (312)
T ss_dssp             T--EEEEEESCCCGGGCEEEEEEEESSSCEEEEE--EEECTHHHHHHHHHHHHHHHHHHHHHSSEEEEE-EEEEEETTT-
T ss_pred             C--EEEEEEccCCcccCEeEEEEEEeCCceEEEE--EEEcchhhhhhcccccccccchhhccCCceeec-ceEEEeCCC-
Confidence            2  2469999999999999999998654433333  3331000       000    000013444432 235678899 


Q ss_pred             cEEEEEEEeccCCC-ceeC
Q psy7036         237 DIVIECRLVGEPEP-TISW  254 (254)
Q Consensus       237 ~~~l~C~~~~~p~p-~~~W  254 (254)
                      .+.|.|.+.+.|.| .++|
T Consensus       238 ~~~l~C~~~~~p~~~~v~W  256 (312)
T 2y23_A          238 NVLLKCKVANIKKETHIVW  256 (312)
T ss_dssp             EEEEEEEEESCCSSCEEEE
T ss_pred             EEEEEEEEcCCCCCCEEEE
Confidence            99999999999988 8998

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*

Probab=99.96  E-value=2.6e-28  Score=181.77  Aligned_cols=215  Identities=14%  Similarity=0.129  Sum_probs=155.8

Q ss_pred             CCCeeEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEE
Q psy7036           7 FAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKV   86 (254)
Q Consensus         7 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C   86 (254)
                      .+|.+...+....+.+|++++|.|.+.+    .++|++++....     ...  ...   ....|.|.+++..|+|.|+|
T Consensus         3 p~p~i~~~~~~~~v~~G~~v~L~C~~~~----~v~W~~~~~~~~-----~~~--~~~---~~~~L~i~~~~~~d~G~Y~C   68 (289)
T 3ejj_X            3 PAPVIEPSGPELVVEPGETVTLRCVSNG----SVEWDGPISPYW-----TLD--PES---PGSTLTTRNATFKNTGTYRC   68 (289)
T ss_dssp             -CCEEESCSSEEEECTTCCEEEEEECSS----CCEEECSCSSSS-----EEC--CCS---SCCEEEESSCCGGGCEEEEE
T ss_pred             CCcEecCCCceEEECCCCCEEEEEEeCC----cEEEccCCCceE-----EEe--ccC---CccEEEEeeeccccCEEEEE
Confidence            4678888888889999999999999976    499998764211     111  111   11279999999999999999


Q ss_pred             EEEcCCCceEEEEEEEEeccccCCCCCccccCCCeeeecCCCeEEEEEEEeeCCCCe-EEEEE-CCEecccCCcceEEEc
Q psy7036          87 KAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQADPAPT-VIWSH-SGVQVKEDKRHKFSID  164 (254)
Q Consensus        87 ~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~-~~W~~-~~~~~~~~~~~~~~~~  164 (254)
                      .+.+..+.....+.|.|..     .+..+...+....+.+|+.+.|.|.+.+.+.+. +.|++ ++..+.....  +...
T Consensus        69 ~~~~~~~~~~~~~~l~V~~-----~~~~~~~~~~~~~v~~g~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~~~--~~~~  141 (289)
T 3ejj_X           69 TELEDPMAGSTTIHLYVKD-----PAHSWNLLAQEVTVVEGQEAVLPCLITDPALKDSVSLMREGGRQVLRKTV--YFFS  141 (289)
T ss_dssp             ECCC-----CEEEEEEECC-----SSCSEEESCSEEEEETTSCEEECEEESCGGGGGSEEEEEGGGEECCTTCC--EEEE
T ss_pred             EEeccCCcceeEEEEEEeC-----CCcceecccceEEEecCCceEeEEEccCCCcceEEEEEecCCeecCCCcc--EEEC
Confidence            9998887777788888863     122234455677888999999999998876655 99986 5555543332  3333


Q ss_pred             CCCCceeeEEEEccCCCCCceeEEEEEE-cCCCcceEEEEEEEecCCCCCCCCCCCCeeecCCccccccCCCCcEEEEEE
Q psy7036         165 KDGHSYFASLEIIDVTIEDAGKYKVTAK-NELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECR  243 (254)
Q Consensus       165 ~~~~~~~~~l~i~~~~~~d~G~y~C~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~l~C~  243 (254)
                      .++     .|.|.+++.+|.|.|+|.+. +..+.....+.|.|....      ..+|.+...+....+.+|+ .+.|.|.
T Consensus       142 ~~~-----~L~i~~v~~~d~G~Y~C~a~~~~~~~~~~~~~l~V~~~~------~~~p~i~~~~~~~~~~~g~-~~~l~C~  209 (289)
T 3ejj_X          142 PWR-----GFIIRKAKVLDSNTYVCKTMVNGRESTSTGIWLKVNRVH------PEPPQIKLEPSKLVRIRGE-AAQIVCS  209 (289)
T ss_dssp             TTT-----EEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEESSC------CCCCEEEEESSSEECCSSS-CEEEEEE
T ss_pred             CCC-----CEEEeecccccCEEEEEEEEeCCCccccccEEEEEEECC------CCCCeEEecCCceEEEeCC-cEEEEEE
Confidence            333     79999999999999999999 444555666777776421      2367777777777778899 9999999


Q ss_pred             Eec-cCCCceeC
Q psy7036         244 LVG-EPEPTISW  254 (254)
Q Consensus       244 ~~~-~p~p~~~W  254 (254)
                      +.+ .|.|.+.|
T Consensus       210 ~~~~~p~~~i~W  221 (289)
T 3ejj_X          210 ATNAEVGFNVIL  221 (289)
T ss_dssp             EEESSSCCEEEE
T ss_pred             eCCCCCceEEEE
Confidence            998 78899998

>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*

Probab=99.96  E-value=3.5e-29  Score=176.23  Aligned_cols=173  Identities=17%  Similarity=0.141  Sum_probs=122.6

Q ss_pred             ceeecCCCeEEEEEE---EeeCCCCceEEEeCCEEeee---------------CCcceEEEeecCCcceEEEEEEeccCC
Q psy7036          17 LRQEDEGNRLIFECQ---LLCNPKPDIVWFRGETQLSE---------------DTRTVMKTTPIGTNKYLVALELDDVIE   78 (254)
Q Consensus        17 ~~~v~~g~~v~l~C~---~~~~~~~~v~W~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~l~i~~~~~   78 (254)
                      ++++.+|++++|.|.   +.+.|.+.|+|+|+|.....               ..+........   .....|.|.+++.
T Consensus         2 ~Vta~~Ge~v~L~C~~~~v~~~p~~~V~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~L~I~~v~~   78 (203)
T 4fa8_A            2 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRS---ANTFFLVVTAANI   78 (203)
T ss_dssp             CCEEETTCCEEEEEECSSTTCSTTSEEEEEEEETTTEEEEEEEEETTEEEECGGGBTTEEEEEE---TTEEEEEESSCCG
T ss_pred             CeEEEcCCCEEEEeeeeccCCCCCcEEEEEEcCCCcceEEEEecCCceEEeeccccceEEEEEc---CCEEEEEEccCCH
Confidence            567899999999996   45678899999997632110               00111111111   1234799999999


Q ss_pred             CCCeEEEEEEEcCCCceEEEEEEEEeccccCCCCCccccCCCeeeecCCCeEEEEEEEeeCCCCeEEEEECCEeccc--C
Q psy7036          79 TDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKE--D  156 (254)
Q Consensus        79 ~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~--~  156 (254)
                      +|+|.|+|.+.|..|.....+.|.|.      .||.+...+....+.+|+.+.|.|.+.|.|.|.+.|++++..+..  .
T Consensus        79 ~D~G~Y~C~a~n~~g~~~~~~~l~V~------~p~~~~~~~~~~~v~~g~~~~l~C~~~G~P~P~v~W~~~~~~~~~~~~  152 (203)
T 4fa8_A           79 SHDGNYLCRMKLGETEVTKQEHLSVV------KPLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVEPAPTA  152 (203)
T ss_dssp             GGCEEEEEEEEETTEEEEEEEEEEEE------EEEEEEEEEEECCSSCSCCEEEEEEEEEESCCEEEECCC---------
T ss_pred             HHCeEEEEEEEcCCCcEEEEEEEEec------CCceeeecceeEEEcCCCEEEEEEEcCCCCCCEEEEEECCeeecCccc
Confidence            99999999999999988888888886      344444445556678899999999999999999999987655432  2


Q ss_pred             CcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcceE
Q psy7036         157 KRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNA  200 (254)
Q Consensus       157 ~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~  200 (254)
                      ...++....++..  ..+.|.+++.+|.|.|+|.|.|..|.+..
T Consensus       153 ~~~r~~~~~~g~l--~il~i~~v~~~D~G~YtC~A~N~~G~a~~  194 (203)
T 4fa8_A          153 ANGGVMKEKDGSL--SVAVDLSLPKPWHLPVTCVGKNDKEEAHG  194 (203)
T ss_dssp             ---CCEECTTSCE--EEEEEEEECSSCCCCEEEEEESSSCEEEE
T ss_pred             ccceEEEeCCCCE--EEEEECCCCHHHCEEEEEEEEcCCCEEEE
Confidence            2334445555532  24667789999999999999999998764

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4

Probab=99.96  E-value=3.5e-29  Score=194.42  Aligned_cols=231  Identities=17%  Similarity=0.197  Sum_probs=160.5

Q ss_pred             CCCCCCeeEeCCCceeecCCCeEEEEEEEee-CCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCe
Q psy7036           4 AEDFAPSFTQKPQLRQEDEGNRLIFECQLLC-NPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAG   82 (254)
Q Consensus         4 ~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G   82 (254)
                      .+..+|.|...|....+.+|+.++|.|.+.+ .|.+.++|+|+|..+...... .......     .+|.|.+++..|+|
T Consensus         2 ~v~~~P~~~~~p~~~~v~~G~~v~l~C~~~~~~p~~~v~W~k~g~~~~~~~~~-~~~~~~~-----~~L~i~~~~~~D~G   75 (395)
T 1bih_A            2 PVDKYPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHN-AALRKDE-----GSLVFLRPQASDEG   75 (395)
T ss_dssp             ---CCCEECCCCSEEEEETTSCEEECCCEESCCSSCEEEEEESSSBCCTTTTT-EEECTTS-----CCEEESSCCGGGCE
T ss_pred             CcCCCCEeecCCCceEEeCCCEEEEEEEEecCCCCceEEEEECCcCcccccce-EEEecCC-----ceEEEecCCCCCCc
Confidence            4567899999999999999999999999988 788999999999887665432 2111111     16999999999999


Q ss_pred             EEEEEEEcCCCceE-EEEEEEEeccccCCCCCccccCCCeeeecCCCeEEEEEEE-eeCCCCeEEEEECCE---ecccC-
Q psy7036          83 LYKVKAKNKMGEVA-ASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRI-QADPAPTVIWSHSGV---QVKED-  156 (254)
Q Consensus        83 ~Y~C~~~~~~~~~~-~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~~~~~~~~W~~~~~---~~~~~-  156 (254)
                      .|+|.+.|..|... ..+.|.|...    ..|.+  .+....+.+|+.+.|.|.+ .+.|.+.+.|++++.   ..... 
T Consensus        76 ~Y~C~a~n~~g~~~s~~~~l~v~~~----~~p~~--~~~~~~~~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~  149 (395)
T 1bih_A           76 HYQCFAETPAGVASSRVISFRKTYL----IASPA--KTHEKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVT  149 (395)
T ss_dssp             EEEEEEEETTEEEECCCEEEEEEEE----ECCCC--EEEEECCBTTEEEEECCCCCEEESCCEEEEEEEETTSCGGGCCC
T ss_pred             EEEEEEEeCCCeEEeEEEEEEEEEe----ecCCc--CCcceeeeeCCcEEEEecCCCCCCCCeEEEEecCCCcCcccccc
Confidence            99999999877643 2345554321    11222  2234567789999999995 788999999999862   11111 


Q ss_pred             -CcceEEEcCCCCceeeEEEEccCCCCCce---eEEEEEEcCCCcceEEEEEEEec-CCCC--CCCCCCCCeeecCCccc
Q psy7036         157 -KRHKFSIDKDGHSYFASLEIIDVTIEDAG---KYKVTAKNELGESNATISLNFDS-DDAP--VPGEGTKPVFTERPVTK  229 (254)
Q Consensus       157 -~~~~~~~~~~~~~~~~~l~i~~~~~~d~G---~y~C~~~~~~~~~~~~~~~~v~~-~~~~--~~~~~~~p~~~~~~~~~  229 (254)
                       ...++....++     .|.|.+++.+|.|   .|+|.+.|..+............ ....  .......|.+  .+...
T Consensus       150 ~~~~~~~~~~~~-----~L~i~~v~~~d~G~~~~Y~C~a~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~~  222 (395)
T 1bih_A          150 DFDRRITAGPDG-----NLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQY--VSKDM  222 (395)
T ss_dssp             CCCTTEEECTTS-----CEEEEEECGGGCCSSEEEEEEEECTTCSSCEEEEEEEECCCBCCSSCCCCCCEEEE--ECCSE
T ss_pred             cccccEEEcCCC-----cEEEEEEeeccCCCceEEEEEEEecccceEEEeeeEEecccccccccccCCcCcee--cCCce
Confidence             02233344444     6999999999999   99999999988765443322221 1100  0011123444  24555


Q ss_pred             cccCCCCcEEEEEEEeccCCCceeC
Q psy7036         230 QSDDDLNDIVIECRLVGEPEPTISW  254 (254)
Q Consensus       230 ~~~~g~~~~~l~C~~~~~p~p~~~W  254 (254)
                      .+.+|+ .+.|.|.+.|.|.|.++|
T Consensus       223 ~~~~G~-~v~l~C~~~g~p~~~i~W  246 (395)
T 1bih_A          223 MAKAGD-VTMIYCMYGSNPMGYPNY  246 (395)
T ss_dssp             EEETTS-CEEEEEEEECSSCCCCEE
T ss_pred             EEECCC-cEEEEEEeccCCCCeEEE
Confidence            778899 999999999999999998

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A

Probab=99.96  E-value=5.2e-28  Score=183.54  Aligned_cols=225  Identities=15%  Similarity=0.237  Sum_probs=151.3

Q ss_pred             CCeeEeCCCceeecCCCeEEEEEEEeeC----CCCceEEEeCC--EE-------------eeeCCcceEEEeecCCcceE
Q psy7036           8 APSFTQKPQLRQEDEGNRLIFECQLLCN----PKPDIVWFRGE--TQ-------------LSEDTRTVMKTTPIGTNKYL   68 (254)
Q Consensus         8 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~----~~~~v~W~~~~--~~-------------~~~~~~~~~~~~~~~~~~~~   68 (254)
                      ++.+...+....+.+|++++|.|.+.+.    +.+.+.|++++  ..             +......++....  .....
T Consensus        14 ~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~--~~~~~   91 (331)
T 3u83_A           14 PSQVVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGVSVLAPYRERVEFLR--PSFTD   91 (331)
T ss_dssp             -------CEEEEEETTCCEEECCBCSSCCSSCEEEEEEEEEEETTEEEEEEEEETTTEEEECTTCTTTEEESS--CSSSB
T ss_pred             CcceEEcCCcEEEEecCCEEEeeecCCCCCCCceEEEEEEEcCCCCCceEEEEeccCCCCcCcccCCceEecc--cCCCC
Confidence            4456677788899999999999999765    44579999953  21             1111112222211  11122


Q ss_pred             EEEEEeccCCCCCeEEEEE-EEcCCCceEEEEEEEEeccccCCCCCcc--ccCCCeeeecCC---CeEEEEEE-EeeCCC
Q psy7036          69 VALELDDVIETDAGLYKVK-AKNKMGEVAASINLNFSREQIDGLAPTF--LKKPSIRQEDDG---KRLLFECR-IQADPA  141 (254)
Q Consensus        69 ~~l~i~~~~~~d~G~Y~C~-~~~~~~~~~~~~~l~v~~~~~~~~~~~~--~~~~~~~~~~~g---~~~~l~C~-~~~~~~  141 (254)
                      .+|.|.+++..|+|.|+|. +.+..+.....+.|.|..      +|.+  ........+.+|   +.+.|.|. ..+.|.
T Consensus        92 ~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~------~p~~~~~~~~~~~~~~~g~~~~~~~l~C~~~~~~p~  165 (331)
T 3u83_A           92 GTIRLSRLELEDEGVYICEFATFPTGNRESQLNLTVMA------KPTNWIEGTQAVLRAKKGQDDKVLVATCTSANGKPP  165 (331)
T ss_dssp             CCEEECSCCGGGCEEEEEEEEEETTEEEEEEEEEEEEB------CCEEEEEECSSCEEECTTCCCCEEEEEEEEEEEBSC
T ss_pred             ceEEEcccCcccCcEEEEEEEecCCCccEEEEEEEEec------CCcceeecCCCceeecCCCccceEEEEEEecCCcCC
Confidence            3799999999999999998 455566677778888863      3332  223445566777   77999998 888999


Q ss_pred             CeEEEEECCEecccCCcceEEEcCCCC-ceeeEEEEccCCCCCceeEEEEEEcCCCcceEEEEEEEecCCCCCCCCCCCC
Q psy7036         142 PTVIWSHSGVQVKEDKRHKFSIDKDGH-SYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKP  220 (254)
Q Consensus       142 ~~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~p  220 (254)
                      +.+.|++++......   ......++. ...+.|.|..+..+|.|.|+|.|.|..+....++.|.|..          +|
T Consensus       166 ~~i~W~~~~~~~~~~---~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~l~V~~----------~P  232 (331)
T 3u83_A          166 SVVSWETRLKGEAEY---QEIRNPNGTVTVISRYRLVPSREAHQQSLACIVNYHMDRFKESLTLNVQY----------EP  232 (331)
T ss_dssp             CEEEEEESSCCEEEE---EEEECTTSCEEEEEEEEECCCGGGTTCEEEEEEEETTEEEEEEEECCEEE----------EE
T ss_pred             ceEEEEcCCCCcccc---ceeECCCCcEEEEEEEEEEeccccCCCEEEEEEecCCCcceeeEEEEEec----------CC
Confidence            999999963221110   111112222 2345799999999999999999999988877777777764          45


Q ss_pred             eeec-CCccccccCCCCcEEEEEEEeccCCCc-eeC
Q psy7036         221 VFTE-RPVTKQSDDDLNDIVIECRLVGEPEPT-ISW  254 (254)
Q Consensus       221 ~~~~-~~~~~~~~~g~~~~~l~C~~~~~p~p~-~~W  254 (254)
                      .+.. .+....+.+|+ .+.|.|.+.|+|.|. +.|
T Consensus       233 ~~~~~~~~~~~~~~g~-~~~l~C~~~g~p~p~~i~W  267 (331)
T 3u83_A          233 EVTIEGFDGNWYLQRM-DVKLTCKADANPPATEYHW  267 (331)
T ss_dssp             EEEEECCCSCCBTTCC-CEEEEEEEEEESCCCEEEE
T ss_pred             eEEEecCCCceEeCCC-eEEEEEeCcCCCCCCEEEE
Confidence            5543 33444577888 999999999999998 998

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C

Probab=99.96  E-value=4.7e-28  Score=174.55  Aligned_cols=197  Identities=21%  Similarity=0.360  Sum_probs=145.9

Q ss_pred             CCCCeeEeCC----CceeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCC
Q psy7036           6 DFAPSFTQKP----QLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDA   81 (254)
Q Consensus         6 ~~~p~~~~~~----~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~   81 (254)
                      ..+|.|...+    ....+.+|++++|.|.+.+.|.+.+.|++++..+....+........+    ...|.|.+++..|+
T Consensus        13 ~~~P~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~----~~~L~i~~~~~~d~   88 (231)
T 3ojm_B           13 KRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQ----HWSLIMESVVPSDK   88 (231)
T ss_dssp             CEEEEESCGGGGCCSCEEEETTSCEEEECCEEEESCCEEEEEETTEECCGGGSTTCCEEEGG----GTEEEECSCCGGGC
T ss_pred             ccCCccccccccCceeEEEccCCCEEEEEecccCCCCeEEEEECCccccccccccceeeecC----cceEEEecCCcccC
Confidence            3467776655    677899999999999999999999999999998866544321111111    11799999999999


Q ss_pred             eEEEEEEEcCCCceEEEEEEEEeccccCCCCCccc-cCCCeeeecCCCeEEEEEEEeeCCCCeEEEEE----CCEecccC
Q psy7036          82 GLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFL-KKPSIRQEDDGKRLLFECRIQADPAPTVIWSH----SGVQVKED  156 (254)
Q Consensus        82 G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~-~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~----~~~~~~~~  156 (254)
                      |.|+|.+.|..+.......|.|.....  .+|... ..+....+..|+.+.|.|.+.+.|.+.+.|++    ++..+...
T Consensus        89 G~Y~C~~~n~~~~~~~~~~l~V~~~~~--~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~g~~~~~~  166 (231)
T 3ojm_B           89 GNYTCVVENEYGSINHTYHLDVVERSR--HRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPD  166 (231)
T ss_dssp             EEEEEEEEETTEEEEEEEEEEEECCCC--CCCEECTTCSCCEEEETTCCEEEECCEECSSCCEEEEEEECCBTTBSBCTT
T ss_pred             EEEEEEEecccCcccccEEEEEEcCCC--CCCceeeccCCceEEEeCCcEEEEEEEecCCCCEEEEEECCCCCCccccCC
Confidence            999999999988877788888864221  122222 23445678889999999999999999999999    77666543


Q ss_pred             CcceEEEc---CCCCceeeEEEEccCCCCCceeEEEEEEcCCCcceEEEEEEEec
Q psy7036         157 KRHKFSID---KDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFDS  208 (254)
Q Consensus       157 ~~~~~~~~---~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~v~~  208 (254)
                      ........   .......+.|.|.++..+|.|.|+|.|.|..|....++.|.|..
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~  221 (231)
T 3ojm_B          167 GLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQANQSAWLTVLP  221 (231)
T ss_dssp             SCBCEEEEEECSTTCSCTTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             CcceEeEecccccccCCccEEEEecCCHHHCeEEEEEEEeccceEeeEEEEEEec
Confidence            32222111   10111123799999999999999999999999998888888875

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*

Probab=99.96  E-value=8.3e-28  Score=171.73  Aligned_cols=189  Identities=24%  Similarity=0.416  Sum_probs=140.9

Q ss_pred             CCCCeeEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEE
Q psy7036           6 DFAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYK   85 (254)
Q Consensus         6 ~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~   85 (254)
                      ..+|.|...|....+.+|++++|.|.+.+.|.+.+.|+++|..+............. .......+.|.+++..|+|.|+
T Consensus         7 ~~~P~i~~~p~~~~v~~G~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~-~~~~~~~l~i~~v~~~d~G~Y~   85 (217)
T 2vr9_A            7 YQSPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFK-DGALFFYRTMQGKKEQDGGEYW   85 (217)
T ss_dssp             CCCCEEEECCCCEEECTTSCEEECCEEECSSCCEEEEEETTEECCCSSSSSSEEECT-TSCEEESSCCBSSSCBCCEEEE
T ss_pred             cCCCEEecCCCceEEeCCCcEEEEEEcCCCCCCeEEEEECCcCccCCCccceeEEec-CCceEEEEEeccCCcccCceEE
Confidence            468899999999999999999999999988899999999999887643222221111 2222223478899999999999


Q ss_pred             EEEEcCCCce-EEEEEEEEeccccCCCCCccccCCCeeeecCCCeEEEEEEE-eeCCCCeEEEEECCEecccCCc-----
Q psy7036          86 VKAKNKMGEV-AASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRI-QADPAPTVIWSHSGVQVKEDKR-----  158 (254)
Q Consensus        86 C~~~~~~~~~-~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~~~~~~~~W~~~~~~~~~~~~-----  158 (254)
                      |.+.|..+.. .....|.|..     .++.+...+....+..|+.+.|.|.+ .+.|.+.+.|++++..+.....     
T Consensus        86 C~~~n~~g~~~~~~~~l~v~~-----~~~~~~~~~~~~~~~~g~~v~l~C~~~~g~p~~~v~W~~~g~~~~~~~~~~~~~  160 (217)
T 2vr9_A           86 CVAKNRVGQAVSRHASLQIAV-----LRDDFRVEPKDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGA  160 (217)
T ss_dssp             EEEEETTEEEECCCEEEEECE-----ECCSCSBCCCCEEECTTSCEEECCBCCCEESCCEEEEEETTEEECCCCCC---C
T ss_pred             EEEecCCCccccccceEEEEE-----eCCCcEECCCccEEcCCCeEEEEEECCCCCCCCeEEEEECCcCCCccccccccc
Confidence            9999988764 2345555542     23444455556778899999999998 8899999999999988763321     


Q ss_pred             -ceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcceEEEEEE
Q psy7036         159 -HKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLN  205 (254)
Q Consensus       159 -~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~  205 (254)
                       .+.....++     .|.|.+++.+|.|.|+|.|.|..|....+..+.
T Consensus       161 ~~~~~~~~~~-----~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~~l  203 (217)
T 2vr9_A          161 SSRVRIVDGG-----NLLISNVEPIDEGNYKCIAQNLVGTRESSYAKL  203 (217)
T ss_dssp             CCSEEEETTT-----EEEESSCCSTTCEEEEEEEEETTEEEECCCEEE
T ss_pred             CCcEEecCCC-----cEEEeeCCHHHCeEEEEEEEcccceeccccEEE
Confidence             122222232     799999999999999999999999876554333

>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1

Probab=99.96  E-value=3.3e-28  Score=191.41  Aligned_cols=234  Identities=15%  Similarity=0.213  Sum_probs=150.2

Q ss_pred             CCeeEeCCCceeecCCCeEEEEEEEee-CCCC-ceEEEeCCEEeeeCCcceEEEee--cCCcceEEEEEEeccCCCCCeE
Q psy7036           8 APSFTQKPQLRQEDEGNRLIFECQLLC-NPKP-DIVWFRGETQLSEDTRTVMKTTP--IGTNKYLVALELDDVIETDAGL   83 (254)
Q Consensus         8 ~p~~~~~~~~~~v~~g~~v~l~C~~~~-~~~~-~v~W~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~i~~~~~~d~G~   83 (254)
                      +|.+...+....+.+|+.++|.|.+.+ .|.+ .++|+|+|..+............  ++.....+.|.|.+++.+|+|.
T Consensus       116 ~P~v~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~  195 (438)
T 1qgc_4          116 APTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNS  195 (438)
T ss_dssp             CCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCEEEEEEETTEEECTTEEEEEECCCTTTCCEEEEEEEEEEHHHHHTCCE
T ss_pred             CCEEEecCCChhhccCCceEEEEEEccccCCCcEEEEEECCEEcCCCceeccccccCCCCcEEEEEEEEEeCcccCCCCe
Confidence            566665443333456889999999987 6766 89999999987654111111111  1111224589999999999999


Q ss_pred             EEEEEEcCCCceEEEEEEEEeccccCCCCCccccCCCeeeecCCCeEEEEEEEeeCC--CCeEEEEEC--CEeccc----
Q psy7036          84 YKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQADP--APTVIWSHS--GVQVKE----  155 (254)
Q Consensus        84 Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~--~~~~~W~~~--~~~~~~----  155 (254)
                      |+|.+.|..+.......+.+.      .++.....+....+.+|+.+.|.|.+.+.|  .+.+.|+|+  +..+..    
T Consensus       196 Y~C~a~n~~~~~~~~~~~~~~------~~~~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~~~~~~~~~  269 (438)
T 1qgc_4          196 YTCEATHKTSTSPIVKSFNRN------ECEVMLVESGGGLVKPGGSLKLSCTASGFIFNRCAMSWVRQTPEKRLEWVATI  269 (438)
T ss_dssp             EEEEEEETTCSSCEEEEEETT------C-CCEEEEECCEEECTTCCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEE
T ss_pred             EEEEEEecccCCceecccccc------cceeEEecCCceEEecCCcEEEEEEEcccccCCcEEEEEECCCCCCcEEEEEE
Confidence            999999988765333333221      111222223455688999999999999988  678999996  433210    


Q ss_pred             -----------CCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCC-----cceEEEEEEEecCCCCCCCCCCC
Q psy7036         156 -----------DKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELG-----ESNATISLNFDSDDAPVPGEGTK  219 (254)
Q Consensus       156 -----------~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~-----~~~~~~~~~v~~~~~~~~~~~~~  219 (254)
                                 ....++....+.......|.|.+++.+|+|.|+|.|.|..+     .......+.|...      ...+
T Consensus       270 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~~~~~l~V~~~------~~~~  343 (438)
T 1qgc_4          270 SSGGTYTYYPDSVKGRFTISRDNAKNTLYLQMSSLRSADTAMYYCVRREDGGDEGFAYWGQGTVVTVSAA------KTTP  343 (438)
T ss_dssp             CTTSCCEECCGGGTTTEEEEEETTTTEEEEEECSCCGGGCCEEEEEECCSSSCCCCCSBCCCEEEEECSS------CCBC
T ss_pred             eecCCceecCcccCCcEEEEeecCCCeEEEEECCCChhhCEEEEEEEEccCCCccceeeCCCEEEEEecC------CCCC
Confidence                       00111222111111124799999999999999999998543     2223445666531      1124


Q ss_pred             CeeecCCccccccCCCCcEEEEEEEecc-CCC-ceeC
Q psy7036         220 PVFTERPVTKQSDDDLNDIVIECRLVGE-PEP-TISW  254 (254)
Q Consensus       220 p~~~~~~~~~~~~~g~~~~~l~C~~~~~-p~p-~~~W  254 (254)
                      |.+...+....+.+|+ .+.|.|.+.|. |.| .++|
T Consensus       344 P~v~~~~~~~~~~~g~-~v~L~C~~~g~~P~~~~v~W  379 (438)
T 1qgc_4          344 PSVYPLAPGSAAAAAS-MVTLGCLVKGYFPEPVTVTW  379 (438)
T ss_dssp             CEEEEECCCGGGCCSS-EEEEEEEEESCBSSCCEEEE
T ss_pred             CeEEEcCcccccccCC-cEEEEEEeccccCCCcEEEE
Confidence            5554433334567888 99999999997 888 8988

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}

Probab=99.96  E-value=2e-27  Score=172.41  Aligned_cols=195  Identities=22%  Similarity=0.391  Sum_probs=143.3

Q ss_pred             CCCeeEeC----CCceeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceE-EEeecCCcceEEEEEEeccCCCCC
Q psy7036           7 FAPSFTQK----PQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVM-KTTPIGTNKYLVALELDDVIETDA   81 (254)
Q Consensus         7 ~~p~~~~~----~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~   81 (254)
                      .+|.|...    +....+.+|+++.|.|.+.+.|.+.+.|++++..+........ ......     ..|.|.+++..|+
T Consensus        10 ~~P~~~~p~~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~-----~~L~i~~v~~~d~   84 (241)
T 3grw_A           10 GAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQ-----WSLVMESVVPSDR   84 (241)
T ss_dssp             -CCEESSGGGGSCCEEEEETTSEEEEECCEECSSCCEEEEEETTEECCGGGSTTCCEEEGGG-----TEEEECSCCGGGC
T ss_pred             CCceeEcCCCCCCcceEEcCCCeEEEEEEecCCCCceeEEEECCcccCCCCcccceeeeccc-----eEEEEEeCCcccC
Confidence            46777644    4467889999999999999989999999999998865543311 111111     1799999999999


Q ss_pred             eEEEEEEEcCCCceEEEEEEEEeccccCCCCCcc-ccCCCeeeecCCCeEEEEEEEeeCCCCeEEEEE----CCEecccC
Q psy7036          82 GLYKVKAKNKMGEVAASINLNFSREQIDGLAPTF-LKKPSIRQEDDGKRLLFECRIQADPAPTVIWSH----SGVQVKED  156 (254)
Q Consensus        82 G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~-~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~----~~~~~~~~  156 (254)
                      |.|+|.+.+..+.......|.|.....  .++.+ ...+....+..|+.+.|.|.+.+.|.+.+.|++    ++..+...
T Consensus        85 G~Y~C~~~~~~~~~~~~~~l~V~~~~~--~~~~~~~~~~~~~~~~~g~~v~L~C~~~~~p~p~v~W~~~~~~~g~~~~~~  162 (241)
T 3grw_A           85 GNYTCVVENKFGSIRQTYTLDVLERSP--HRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPD  162 (241)
T ss_dssp             EEEEEEEEETTEEEEEEEEEEEECCCC--CCCEEEECTTCSEECCTTCCEEEEEEEECSSCCEEEEEEECCSSSCSSCTT
T ss_pred             EEEEEEEeecCCceEEEEEEEEeccCC--CCceeecCCCccceecCCCEEEEEEEEecCCCCEEEEEEcccCCCcccCCC
Confidence            999999999888877788888764211  12222 223445667889999999999999999999999    77766544


Q ss_pred             CcceEEEc----CCCCceeeEEEEccCCCCCceeEEEEEEcCCCcceEEEEEEEec
Q psy7036         157 KRHKFSID----KDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFDS  208 (254)
Q Consensus       157 ~~~~~~~~----~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~v~~  208 (254)
                      ........    .......+.|.|.++..+|.|.|+|.|.|..|....++.|.|..
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~  218 (241)
T 3grw_A          163 GTPYVTVLKSWISESVEADVRLRLANVSERDGGEYLCRATNFIGVAEKAFWLSVHG  218 (241)
T ss_dssp             TCCCEEEEEEEECSBSEEEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEC--
T ss_pred             CceeeeeeeEeeeeecCCceEEEECcCCcccCcEEEEEEecCcceEEEEEEEEecC
Confidence            33222111    11112335799999999999999999999999998888888875

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A

Probab=99.96  E-value=2.9e-28  Score=188.48  Aligned_cols=214  Identities=19%  Similarity=0.320  Sum_probs=156.8

Q ss_pred             CCceeecCCCeEEEEEEE-eeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcCCC
Q psy7036          15 PQLRQEDEGNRLIFECQL-LCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMG   93 (254)
Q Consensus        15 ~~~~~v~~g~~v~l~C~~-~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~   93 (254)
                      +....+.+|++++|.|.+ .+.|.+.+.|++++..+......+........     .|.|.+++..|+|.|+|.+.+..+
T Consensus       108 ~~~~~v~~G~~v~l~C~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~-----~L~i~~~~~~d~G~Y~C~~~n~~g  182 (382)
T 1cs6_A          108 RDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTG-----NLYIAKTEASDLGNYSCFATSHID  182 (382)
T ss_dssp             CCCEEEETTSCEEECCCCCSEESCCEEEEEESSTTCBCCCCSSEEECTTTC-----CEEESSCCGGGCEEEEEEEEEEET
T ss_pred             CCceEEecCCcEEEEeCCCCCCCCcEEEEEECCCccccccCceEEEecCce-----EEEEEeeCcccCeeEEEEEEEccc
Confidence            455678999999999996 45688899999998754322222221111111     699999999999999999998775


Q ss_pred             ceEE-----EEEEEEeccccCCCCCcccc-CCCeeeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCCC
Q psy7036          94 EVAA-----SINLNFSREQIDGLAPTFLK-KPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDG  167 (254)
Q Consensus        94 ~~~~-----~~~l~v~~~~~~~~~~~~~~-~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~  167 (254)
                      ....     ...+.+........+|.+.. .+....+..|+.+.|.|.+.+.|.+.+.|++++..+...    . ...+ 
T Consensus       183 ~~~~~~~s~~~~l~v~~~~~~~~~P~~~~~~~~~~~~~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~----~-~~~~-  256 (382)
T 1cs6_A          183 FITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSK----W-LSSE-  256 (382)
T ss_dssp             TEEEEEECCCEEEEEESCCCCCEEEEEEECCCSEEEEETTCCEEEECEEEEESCCEEEEEECCSCCSCC----C-SBSS-
T ss_pred             cccceeEccceeeccchhhcccCCCceeccCCCceEEeCCCeEEEEEEEccCCCCEEEEEECCcccccE----E-ecCC-
Confidence            3222     23444432111112333322 344667889999999999999999999999988765421    1 1111 


Q ss_pred             CceeeEEEEccCCCCCceeEEEEEEcCCCcceEEEEEEEecCCCCCCCCCCCCeeecCCccccccCCCCcEEEEEEEecc
Q psy7036         168 HSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLVGE  247 (254)
Q Consensus       168 ~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~l~C~~~~~  247 (254)
                          ..|.|.+++.+|.|.|+|.+.|..|.......|.|..          +|.+...+....+.+|+ .+.|.|.+.|.
T Consensus       257 ----~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~----------~p~~~~~~~~~~~~~g~-~~~l~C~~~g~  321 (382)
T 1cs6_A          257 ----PLLHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIHA----------QPDWLDVITDTEADIGS-DLRWSCVASGK  321 (382)
T ss_dssp             ----SEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEE----------EEEEEECCCCEEEETTC-CEEEECEEEEE
T ss_pred             ----cEEEEccCChhhCEEEEEEEEcCCCeEEEEEEEEEec----------CCCcccCCCccEEcCCC-eEEEEEEeeee
Confidence                2799999999999999999999999888888888874          56677677777888899 99999999999


Q ss_pred             CCCceeC
Q psy7036         248 PEPTISW  254 (254)
Q Consensus       248 p~p~~~W  254 (254)
                      |.|.++|
T Consensus       322 p~p~v~W  328 (382)
T 1cs6_A          322 PRPAVRW  328 (382)
T ss_dssp             SCCEEEE
T ss_pred             cCCEEEE
Confidence            9999998

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}

Probab=99.96  E-value=2.2e-27  Score=169.67  Aligned_cols=177  Identities=16%  Similarity=0.284  Sum_probs=139.2

Q ss_pred             CCCCCeeEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEE
Q psy7036           5 EDFAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLY   84 (254)
Q Consensus         5 ~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y   84 (254)
                      .+..+.|...|....+.+|+++.|.|.+.+.|.+.+.|++++..+.....              ..|.|.+++..|+|.|
T Consensus        15 ~~~~~~i~~~p~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~--------------~~L~i~~v~~~d~G~Y   80 (218)
T 3k0w_A           15 VPRGSKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNGNT--------------SELIFNAVHVKDAGFY   80 (218)
T ss_dssp             ----CCEEECCCCEEEETTSBEEEECEETTTTSSEEEEEETTEECTTCCS--------------SEEEETTCCGGGCEEE
T ss_pred             cCCCCEEEECCCCeEEeCCCcEEEEeeecCCCCCEEEEEECCEECCCCCC--------------CEEEEccCChhhCeEe
Confidence            34578899999999999999999999999888999999999998754321              1799999999999999


Q ss_pred             EEEEEcCCCce-EEEEEEEEecccc---------CCCCCccccCCCeeeecCCCeEEEEEEEeeCCCCeEEEEECCEecc
Q psy7036          85 KVKAKNKMGEV-AASINLNFSREQI---------DGLAPTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVK  154 (254)
Q Consensus        85 ~C~~~~~~~~~-~~~~~l~v~~~~~---------~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~  154 (254)
                      +|.+.+..+.. ...+.|.|.....         ...+|.+...+....+..|+.+.|.|.+.+.|.+.+.|++++..+.
T Consensus        81 ~C~~~n~~~~~~s~~~~l~V~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~v~W~~~~~~~~  160 (218)
T 3k0w_A           81 VCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLT  160 (218)
T ss_dssp             EEEEECTTCCEECCCEEEEEECCCGGGCTTCCSBCCSSCEEEECCCCEEECTTCCEEEECEEEBSSCCEEEEEETTEECT
T ss_pred             EEEEEcCCCCceeeEEEEEEEccCcccccccccccCCCceEEECCCceeecCCCcEEEEEEecccCCCeEEEEECCEECC
Confidence            99999987753 4456677754211         0112444555566778899999999999999999999999998875


Q ss_pred             cCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCc-ceEEEEEEEec
Q psy7036         155 EDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGE-SNATISLNFDS  208 (254)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~-~~~~~~~~v~~  208 (254)
                      ....             ..|.|.+++.+|.|.|+|.|.|..|. .+..+.|.|..
T Consensus       161 ~~~~-------------~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~  202 (218)
T 3k0w_A          161 HETK-------------KLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDE  202 (218)
T ss_dssp             TCCS-------------SEEEESSCCGGGCEEEEEEEECSSCEEECCCEEEEECC
T ss_pred             CCCC-------------CEEEEeecChhcCEEEEEEEEcCCCCceeeeEEEEEeC
Confidence            4321             17999999999999999999998887 46667777764

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A

Probab=99.96  E-value=4e-27  Score=193.64  Aligned_cols=207  Identities=20%  Similarity=0.330  Sum_probs=152.9

Q ss_pred             eEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEc
Q psy7036          11 FTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKN   90 (254)
Q Consensus        11 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~   90 (254)
                      +...+....+.+|+.++|.|.+.+.|.+.++|+++|..+...                ..|.|.+++..|+|.|+|.+.|
T Consensus       206 ~~~~~~~~~~~~G~~~~l~C~~~g~p~~~i~W~~~g~~i~~~----------------~~L~i~~~~~~d~G~Y~C~a~n  269 (642)
T 1e07_A          206 PTISPLNTSYRSGENLNLSCHAASNPPAQYSWFVNGTFQQST----------------QELFIPNITVNNSGSYTCQAHN  269 (642)
T ss_pred             cEEecCCcccccCCEEEEEEEcCCCCCcEEEEEECCeEcccC----------------CceEEecccccCCeEEEEEEEe
Confidence            344556667899999999999988999999999999877321                1699999999999999999999


Q ss_pred             CCCceEE--EEEEEEeccccCCCCCccccCCCeeeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCCCC
Q psy7036          91 KMGEVAA--SINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGH  168 (254)
Q Consensus        91 ~~~~~~~--~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~  168 (254)
                      ..|....  .+.|.|....   .+|.+. ......+..|+.+.|.|.+.+.| +.+.|++++..+....+..+.  .++ 
T Consensus       270 ~~g~~~~s~~~~v~v~~~~---~~p~i~-~~~~~~~~~g~~v~l~C~~~~~p-~~v~W~~~g~~l~~~~~~~~~--~~~-  341 (642)
T 1e07_A          270 SDTGLNRTTVTTITVYAEP---PKPFIT-SNNSNPVEDEDAVALTCEPEIQN-TTYLWWVNNQSLPVSPRLQLS--NDN-  341 (642)
T ss_pred             CCCceEEeeeEEEEEEccC---CCCEEE-cCCceeEecCCcEEEEEECCCCC-ccEEEEECCccCCCcCCEEEe--CCC-
Confidence            8876543  3455554210   122222 22334455678899999998876 689999999887655443332  222 


Q ss_pred             ceeeEEEEccCCCCCceeEEEEEEcCCCcc-eEEEEEEEecCCCCCCCCCCCCeeecCCccccccCCCCcEEEEEEEecc
Q psy7036         169 SYFASLEIIDVTIEDAGKYKVTAKNELGES-NATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLVGE  247 (254)
Q Consensus       169 ~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~l~C~~~~~  247 (254)
                         ..|.|.++..+|.|.|+|.|.|..|.. ...+.|.|...+         +.....+....+.+|+ .+.|.|.+.|+
T Consensus       342 ---~~L~i~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~~p---------~~~~~~~~~~~~~~g~-~~~l~C~~~g~  408 (642)
T 1e07_A          342 ---RTLTLLSVTRNDVGPYECGIQNELSVDHSDPVILNVLYGP---------DDPTISPSYTYYRPGV-NLSLSCHAASN  408 (642)
T ss_pred             ---CEEEEeccCcccCeeEEEEEeCCCCCcceeeEEEEEEcCC---------CCCeecCCceEecCCC-cEEEEEEcCcc
Confidence               279999999999999999999998864 455677776411         1122234555678898 99999999999


Q ss_pred             CCCceeC
Q psy7036         248 PEPTISW  254 (254)
Q Consensus       248 p~p~~~W  254 (254)
                      |.|.++|
T Consensus       409 p~~~i~W  415 (642)
T 1e07_A          409 PPAQYSW  415 (642)
T ss_pred             CCCeEEE
Confidence            9999999

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*

Probab=99.96  E-value=1.4e-28  Score=190.58  Aligned_cols=225  Identities=20%  Similarity=0.316  Sum_probs=156.3

Q ss_pred             CCCeeEeCCCc-eeecCCCeEEEEEEEeeCCCCceEEEe-CCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCC----
Q psy7036           7 FAPSFTQKPQL-RQEDEGNRLIFECQLLCNPKPDIVWFR-GETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETD----   80 (254)
Q Consensus         7 ~~p~~~~~~~~-~~v~~g~~v~l~C~~~~~~~~~v~W~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d----   80 (254)
                      .+|.|...|.. ..+.+|+.++|.|.+.|.|.+.++|+| +|..+......... ..++      .|.|.+++..|    
T Consensus         2 ~~P~f~~~p~~~~~~~~G~~v~l~C~~~g~p~p~v~W~k~~g~~~~~~~~~~~~-~~~~------~L~i~~~~~~d~~~~   74 (388)
T 2v5m_A            2 KGPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQI-SSDG------KLVFPPFRAEDYRQE   74 (388)
T ss_dssp             EEEEEEECCCSEEEEETTTCEEEECEEEEESCCEEEEEETTSCBCCCBTTTBEE-CSTT------EEEECCCCGGGCCHH
T ss_pred             CCCchhhCCCceEEEEcCccEEEEEECCCCCCCEEEEEcCCCCccccCCCceEE-cCCc------eEEecccChhhcccc
Confidence            47899988876 457899999999999999999999999 78777654433321 1111      79999999987    


Q ss_pred             --CeEEEEEEEcCCCce-EEEEEEEEeccccCCCCCccccCCCeeeecCCCeEEEEEEEeeCCC---CeEEEEECCEecc
Q psy7036          81 --AGLYKVKAKNKMGEV-AASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQADPA---PTVIWSHSGVQVK  154 (254)
Q Consensus        81 --~G~Y~C~~~~~~~~~-~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~---~~~~W~~~~~~~~  154 (254)
                        +|.|+|.+.|..|.. ...+.|.+.      .+|.+........+.+|+.+.|.|.+.+.+.   +.+.|++++..+.
T Consensus        75 ~d~G~Y~C~a~n~~g~~~s~~~~v~v~------~~p~~~~~~~~~~v~~G~~v~l~C~~~~~~~~~~~~v~W~~~~~~~~  148 (388)
T 2v5m_A           75 VHAQVYACLARNQFGSIISRDVHVRAV------VAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENY  148 (388)
T ss_dssp             HHEEEEEEEEEETTEEEECCCEEEEEE------CCCCCCCBCCCEEEETTSCEEECCBCCTTTTTTEEEEEEEETTCCEE
T ss_pred             ccCceEEEEEEccCCeEEecceEEEEc------cccccccCccceeeecCCcEEEEEECcCCCCCCcceEEEEeCCCccc
Confidence              999999999988763 345566664      3344444445567889999999999887653   6799999987653


Q ss_pred             cCC---cceEEEcCCCCceeeEEEEccCCCCCc-eeEEEEEEcCCCcceE-E---EEEEEecCCCCCCCCCCCCeeecCC
Q psy7036         155 EDK---RHKFSIDKDGHSYFASLEIIDVTIEDA-GKYKVTAKNELGESNA-T---ISLNFDSDDAPVPGEGTKPVFTERP  226 (254)
Q Consensus       155 ~~~---~~~~~~~~~~~~~~~~l~i~~~~~~d~-G~y~C~~~~~~~~~~~-~---~~~~v~~~~~~~~~~~~~p~~~~~~  226 (254)
                      ...   ..+.....++     .|.|.+++.+|. |.|+|.+.|..+.... .   ..+.|.......  .+..|.+..  
T Consensus       149 ~~~~~~~~~~~~~~~~-----~L~i~~v~~~d~~G~Y~C~~~n~~~~~~~~~~~~~~l~v~~~~~~~--~p~~~~~~~--  219 (388)
T 2v5m_A          149 FPGAEYDGKYLVLPSG-----ELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSS--APRTPALVQ--  219 (388)
T ss_dssp             CSSSCBTTTEEECTTS-----CEEESSCCGGGGGCCEEEEEEETTTCCEEECSSCBCEEEECCCSCE--EEECCSSCC--
T ss_pred             ccccCCCCcEEEccCC-----cEEEecCCccccCeeEEEEeccCCCCceeeccccceEEEecCCcCC--CCcCccccC--
Confidence            221   1223333333     699999999999 9999999998643321 1   234444311000  000111222  


Q ss_pred             ccccccCCCCcEEEEEEEeccCCCceeC
Q psy7036         227 VTKQSDDDLNDIVIECRLVGEPEPTISW  254 (254)
Q Consensus       227 ~~~~~~~g~~~~~l~C~~~~~p~p~~~W  254 (254)
                      ....+.+|+ .+.|.|.+.|+|.|.+.|
T Consensus       220 ~~~~v~~G~-~v~l~C~~~g~p~p~v~W  246 (388)
T 2v5m_A          220 KPLELMVAH-TISLLCPAQGFPAPSFRW  246 (388)
T ss_dssp             CCEEEETTS-CEEECCCCEEESCCEEEE
T ss_pred             CceEEeeCC-cEEEEEECCCCCCCEEEE
Confidence            223467788 999999999999999998

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}

Probab=99.96  E-value=1.8e-27  Score=169.38  Aligned_cols=179  Identities=16%  Similarity=0.271  Sum_probs=136.4

Q ss_pred             cCCCeEEEEEEEeeC-CCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcCCCceEEEE
Q psy7036          21 DEGNRLIFECQLLCN-PKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASI   99 (254)
Q Consensus        21 ~~g~~v~l~C~~~~~-~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~   99 (254)
                      -.++.+.|.|.+.+. |.+.++|+|+|..+....+..+....     ....|.|.+++.+|+|.|+|.+.|..+.....+
T Consensus        15 c~~~~~~l~C~~~~~~p~~~i~W~~~g~~i~~~~~~~~~~~~-----~~~~L~i~~v~~~D~G~Y~C~~~n~~~~~~~~~   89 (212)
T 2r15_A           15 STAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTG-----EQIWLQINEPTPNDKGKYVMELFDGKTGHQKTV   89 (212)
T ss_dssp             ECSSEEEEEEEBSSCCSSCEEEEEETTEECCCCSSEEEEEET-----TEEEEEEESCCGGGCEEEEEEEECSSCEEEEEE
T ss_pred             EcCceEEEEEEEeccCCCceEEEEECCEEccCCCeEEEEEeC-----CEEEEEECCCCcccCEEEEEEEecCCcceEEEE
Confidence            467788888888774 58899999999999876665543322     123799999999999999999999888776666


Q ss_pred             EEEEecc---------------ccCCCCCccccCCCeeeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEEc
Q psy7036         100 NLNFSRE---------------QIDGLAPTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSID  164 (254)
Q Consensus       100 ~l~v~~~---------------~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~  164 (254)
                      .|.|...               .....++.....+....+..|+.+.|.|.+.+.|.+.+.|++++..+.......+...
T Consensus        90 ~l~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~  169 (212)
T 2r15_A           90 DLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNLKFE  169 (212)
T ss_dssp             EECHHHHHHHHHHHHHHHHHHHHHHHSCEEEEBCCSEEEEETTCCEEEEEEEECSSCCEEEEEETTEEECCCSSEEEEEE
T ss_pred             EEEEeeccchhhhccccCcccccccCCCcccccCCCcEEEccCCeEEEEEEEcCCCCceEEEEECCeECccCCCEEEEEc
Confidence            6654310               0000122233345566788999999999999999999999999999876665554443


Q ss_pred             CCCCceeeEEEEccCCCCCceeEEEEEEcCCCcceEEEEEEEe
Q psy7036         165 KDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFD  207 (254)
Q Consensus       165 ~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~v~  207 (254)
                      .++   .+.|.|.+++.+|.|.|+|.|.|..|....++.|.|.
T Consensus       170 ~~~---~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~  209 (212)
T 2r15_A          170 AGR---TAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVF  209 (212)
T ss_dssp             TTT---EEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             CCC---EEEEEEcCcchHHCeEEEEEEEcCCCcEEEEEEEEEE
Confidence            222   1489999999999999999999999998888888876

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D

Probab=99.96  E-value=5.6e-28  Score=182.27  Aligned_cols=220  Identities=11%  Similarity=0.186  Sum_probs=150.0

Q ss_pred             CCCCeeEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEE
Q psy7036           6 DFAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYK   85 (254)
Q Consensus         6 ~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~   85 (254)
                      ..+|.|...|. ..+.+|++++|.|.+.+. .+.+.|+|+|..+.......    .     ....|.|.+++.+|+|.|+
T Consensus        22 ~~~P~i~~~p~-~~v~~G~~v~L~C~~~~~-~~~~~W~k~g~~~~~~~~~~----~-----~~~~L~I~~v~~~D~G~Y~   90 (316)
T 3vh8_G           22 QDKPFLSAWPS-AVVPRGGHVTLRCHYRHR-FNNFMLYKEDRIHIPIFHGR----I-----FQESFNMSPVTTAHAGNYT   90 (316)
T ss_dssp             --CCEEEEESC-SEEETTSCEEEEEEBTTB-CCSEEEEESSCSSSCHHHHC----C-----BSSCEEECSCCGGGCEEEE
T ss_pred             CCCCEeeccCC-CccCCCCCEEEEEEccCC-CceEEEEeCCCccceeecCC----c-----ceEEEEECCCCcccCeEEE
Confidence            35788888887 568899999999999876 67899999998653311100    0     0116999999999999999


Q ss_pred             EEEEcCCC-----ceEEEEEEEEeccccCCCCCccccCCCeeeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcce
Q psy7036          86 VKAKNKMG-----EVAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHK  160 (254)
Q Consensus        86 C~~~~~~~-----~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~  160 (254)
                      |.+.+..+     .....+.|.|...   ..+|.+...+... +.+|+.++|.|.+. .+.+.+.|++++..+.......
T Consensus        91 C~a~~~~~~~~~~~~s~~~~l~V~~~---~~~p~~~~~~~~~-v~~G~~v~L~C~~~-~~~~~~~w~k~g~~~~~~~~~~  165 (316)
T 3vh8_G           91 CRGSHPHSPTGWSAPSNPVVIMVTGN---HRKPSLLAHPGPL-VKSGERVILQCWSD-IMFEHFFLHKEGISKDPSRLVG  165 (316)
T ss_dssp             EEEBCSSSSSSBCCCCCCEEEEEECS---SCCCEEEEESCSE-EETTCCEEEEEEES-SCCSEEEEEETTCCSCCEEEEC
T ss_pred             EEEEcCCCCcceecCCCcEEEEEecC---CCCCeEEecCCCc-cCCCCeEEEEEcCC-CCCcEEEEEECCCccccceeee
Confidence            99986332     2334566666531   1233443333333 77899999999984 5567899999987664221111


Q ss_pred             EEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcc-----eEEEEEEEecCCCCCCCCCCCCeeecCCccccccCCC
Q psy7036         161 FSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGES-----NATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDL  235 (254)
Q Consensus       161 ~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~-----~~~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~g~  235 (254)
                      ....   ......|.|.+++.+|+|.|+|.|.|..+..     ...+.|.|..       ...+|.+...+.. .+.+|+
T Consensus       166 ~~~~---~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~s~~~~l~V~~-------~~~~p~i~~~~~~-~v~~G~  234 (316)
T 3vh8_G          166 QIHD---GVSKANFSIGPMMLALAGTYRCYGSVTHTPYQLSAPSDPLDIVVTG-------PYEKPSLSAQPGP-KVQAGE  234 (316)
T ss_dssp             EEET---TEEEEEEEECSCCGGGCEEEEEEEECTTCTTBCCCCCCCEEEEEEC-------SSCCCEEEEESCS-CCCTTS
T ss_pred             eecC---CCceEEEEECCCChhhCceEEEEEecCCCCccccCCCCCEEEEecC-------CCCCCeEEeCCCC-eecCCC
Confidence            1110   1122479999999999999999999987742     4455666653       1235666665543 578898


Q ss_pred             CcEEEEEEEeccCCCceeC
Q psy7036         236 NDIVIECRLVGEPEPTISW  254 (254)
Q Consensus       236 ~~~~l~C~~~~~p~p~~~W  254 (254)
                       .+.|.|.+. .|.+.+.|
T Consensus       235 -~v~L~C~~~-~~~~~~~W  251 (316)
T 3vh8_G          235 -SVTLSCSSR-SSYDMYHL  251 (316)
T ss_dssp             -CCEEEEEES-SCCSEEEE
T ss_pred             -cEEEEEECC-CCCcEEEE
Confidence             999999997 46677877

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*

Probab=99.96  E-value=1e-27  Score=185.57  Aligned_cols=172  Identities=27%  Similarity=0.471  Sum_probs=138.6

Q ss_pred             eCCCceeecCCCeEEEEEEEeeCCCCceEEEeCCE-EeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcC
Q psy7036          13 QKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGET-QLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNK   91 (254)
Q Consensus        13 ~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~   91 (254)
                      ..+....+.+|+++.|.|.+.|.|.+.+.|++++. .+....+  .  ....     ..|.|.+++.+|+|.|+|.+.|.
T Consensus       210 ~~~~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~~~~~~~~~~~--~--~~~~-----~~L~I~~v~~~D~G~Y~C~a~N~  280 (384)
T 3kld_A          210 QFPETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKAR--R--HKSN-----GILEIPNFQQEDAGSYECVAENS  280 (384)
T ss_dssp             ECCSEEEEETTSCEEEEEEEEEESCCEEEEEETTCCCCCTTCE--E--CTTS-----CEEEECSCCGGGCEEEEEEEEET
T ss_pred             cCCCceEecCCCcEEEEEEEeecCCCcEEEEeCCCccccccce--e--cCCC-----cEEEECCCChhhCEEEEEEEEcC
Confidence            34666778999999999999999999999999544 4432211  1  1111     17999999999999999999999


Q ss_pred             CCceEEEEEEEEeccccCCCCCccccCCCeeeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCCCCcee
Q psy7036          92 MGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYF  171 (254)
Q Consensus        92 ~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~  171 (254)
                      .|.......|.|.      .+|.+........+..|+.+.|.|.+.|.|.|.+.|+|++..+.......  .. ++    
T Consensus       281 ~G~~~~~~~l~v~------~~P~~~~~~~~~~v~~g~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~--~~-~~----  347 (384)
T 3kld_A          281 RGKNVAKGQLTFY------AQPNWVQIINDIHVAMEESVFWECKANGRPKPTYRWLKNGDPLLTRDRIQ--IE-QG----  347 (384)
T ss_dssp             TEEEEEEEEEEEE------EEEEEEECCCCEEECTTCCEEEECEEEEESCCEEEEEETTEECCCBTTEE--EE-TT----
T ss_pred             CCeEEEEEEEEEe------cCCccccCCCceEecCCCCEEEEeECCccCCCeEEEEECCEECCCCccEE--Ee-CC----
Confidence            9988888888886      34555555566778899999999999999999999999999886544432  22 22    


Q ss_pred             eEEEEccCCCCCceeEEEEEEcCCCcceEEEEEEEe
Q psy7036         172 ASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFD  207 (254)
Q Consensus       172 ~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~v~  207 (254)
                       .|.|.++..+|+|.|+|.|.|..|....+..|.|.
T Consensus       348 -~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V~  382 (384)
T 3kld_A          348 -TLNITIVNLSDAGMYQCVAENKHGVIFSSAELSVI  382 (384)
T ss_dssp             -EEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             -EEEEeecChhhCEEEEEEEEeCCceEEeceEEEEe
Confidence             79999999999999999999999999888888875

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4

Probab=99.95  E-value=5.9e-27  Score=181.89  Aligned_cols=174  Identities=21%  Similarity=0.382  Sum_probs=139.2

Q ss_pred             CCceeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcCCCc
Q psy7036          15 PQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGE   94 (254)
Q Consensus        15 ~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~   94 (254)
                      +....+.+|+.+.|.|.+.+.|.+.+.|++++..+......++........   ..|.|.+++..|+|.|+|.+.|..|.
T Consensus       219 ~~~~~~~~G~~v~l~C~~~g~p~~~i~W~~~g~~~~~~~~~~~~~~~~~~~---~~L~i~~~~~~d~G~Y~C~a~n~~g~  295 (395)
T 1bih_A          219 SKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSG---KRLLFKTTLPEDEGVYTCEVDNGVGK  295 (395)
T ss_dssp             CCSEEEETTSCEEEEEEEECSSCCCCEEEETTEECCCCTTSSEESCSSSTT---SEEEESSCCGGGCEEEEEEECCSSSS
T ss_pred             CCceEEECCCcEEEEEEeccCCCCeEEEEECCEEcCCCCceeEEEEecCCC---ceEEEccCChhhCEEEEEEEEeCCCC
Confidence            556788999999999999999999999999999887654443332211111   16999999999999999999999888


Q ss_pred             eEE-EEEEEEeccccCCCCCccccCCCe-eeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCCCCceee
Q psy7036          95 VAA-SINLNFSREQIDGLAPTFLKKPSI-RQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFA  172 (254)
Q Consensus        95 ~~~-~~~l~v~~~~~~~~~~~~~~~~~~-~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (254)
                      ... .+.|.|..      +|.+...+.. ..+..|+.+.|.|.+.+.|.+.+.|++++..+...   ++....+      
T Consensus       296 ~~~~~~~l~V~~------~P~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~---~~~~~~~------  360 (395)
T 1bih_A          296 PQKHSLKLTVVS------APKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGG---RATVTDS------  360 (395)
T ss_dssp             CEEEEEEEEEEE------EEEEEECCCSEEEECTTSCEEEECEEEEESCCCCEEEETTEECCSS---SEEEETT------
T ss_pred             ceEEEEEEEEEc------CCccccCCCcceEecCCCeEEEEEEECcccCCeeEEEECCEECCCC---ceEEECC------
Confidence            655 78888873      4445444444 67889999999999999999999999999987643   2333222      


Q ss_pred             EEEEccCCCCCceeEEEEEEcCCCcceEEEEEEE
Q psy7036         173 SLEIIDVTIEDAGKYKVTAKNELGESNATISLNF  206 (254)
Q Consensus       173 ~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~v  206 (254)
                      .|.|.++..+|.|.|+|.|.|..|....++.|.|
T Consensus       361 ~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V  394 (395)
T 1bih_A          361 GLVIKGVKNGDKGYYGCRATNEHGDKYFETLVQV  394 (395)
T ss_dssp             EEEESSCCSTTCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             EEEEeeCCcccCEEEEEEEEccCCCceEEEEEEE
Confidence            7999999999999999999999999888887766

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A

Probab=99.95  E-value=3e-27  Score=176.17  Aligned_cols=187  Identities=20%  Similarity=0.359  Sum_probs=142.5

Q ss_pred             CCCCCeeEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEE
Q psy7036           5 EDFAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLY   84 (254)
Q Consensus         5 ~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y   84 (254)
                      +..+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+......++.....+      .|.|.+++..|+|.|
T Consensus        97 v~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~------~L~i~~~~~~d~G~Y  170 (291)
T 1qz1_A           97 IFQKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNN------YLQIRGIKKTDEGTY  170 (291)
T ss_dssp             EECCSEEEECCSSEEEETTSCEEECCEEECSSCCEEEEEETTSCSSTTCCTTEEECTTS------CEEETTCCGGGCEEE
T ss_pred             eeccccccCCCCcccccCCCeEEEEEEeccCCCCEEEEEECCEEcccCCCceEEEccCC------cEEEccCccccCeEE
Confidence            34567888888888899999999999999999999999999987755444333333222      699999999999999


Q ss_pred             EEEEEcCCCce--EEEEEEEEeccccCCCCCccccCC--CeeeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCc--
Q psy7036          85 KVKAKNKMGEV--AASINLNFSREQIDGLAPTFLKKP--SIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKR--  158 (254)
Q Consensus        85 ~C~~~~~~~~~--~~~~~l~v~~~~~~~~~~~~~~~~--~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~--  158 (254)
                      +|.+.|..+..  ...+.+.|.      .+|.+....  ....+..|+.+.|.|.+.+.|.+.+.|++++..+.....  
T Consensus       171 ~C~a~n~~~~~~~~~~~~l~v~------~~p~~~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~  244 (291)
T 1qz1_A          171 RCEGRILARGEINFKDIQVIVN------VPPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDD  244 (291)
T ss_dssp             EEEEEEGGGTEEEEEEEEEEEE------EEEEEEESCSEEEEETTSCCCEEEEEEEEEESCCEEEEEETTEECCCC--CC
T ss_pred             EEEEEecCCCceeeEEEEEEEe------cCCcccccccccccccccCceEEEEEEEEEeCCCcEEEEECCEECcCCCCCC
Confidence            99999866432  344555554      233333222  244677899999999999999999999999998865531  


Q ss_pred             ceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcceEEEEEEEe
Q psy7036         159 HKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFD  207 (254)
Q Consensus       159 ~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~v~  207 (254)
                      .++....++    +.|.|.++..+|.|.|+|.|.|..|.....+.|.|.
T Consensus       245 ~~~~~~~~~----~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~  289 (291)
T 1qz1_A          245 EKHIFSDDS----SELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKVF  289 (291)
T ss_dssp             SSEEECTTS----CEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             cceEEcCCC----cEEEEEecChhcCEEEEEEEEeCCCceEEEEEEEEE
Confidence            233333332    279999999999999999999999998888888875

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4

Probab=99.95  E-value=1.8e-27  Score=169.24  Aligned_cols=182  Identities=19%  Similarity=0.279  Sum_probs=132.6

Q ss_pred             CeeEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeCCEEee----------eCCcceEEEeecCCcceEEEEEEeccCC
Q psy7036           9 PSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLS----------EDTRTVMKTTPIGTNKYLVALELDDVIE   78 (254)
Q Consensus         9 p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~l~i~~~~~   78 (254)
                      ..|...+....+.+|+++.|.|.+.+.|.+.+.|++++..+.          .....++....       ..|.|.+++.
T Consensus         2 ~~v~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-------~~L~i~~v~~   74 (212)
T 1f97_A            2 GSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSS-------SGITFSSVTR   74 (212)
T ss_dssp             CEEECSCSEEEEETTCCEEEECEEESCSSEEEEEEEEETTEEEEEEETTEECGGGTTTEEEET-------TEEEESCCCG
T ss_pred             ceEEecCCCeEEEcCCCEEEEeEeCCCCCcEEEEEECCCceeeEEecCCcccccccCcEEeec-------eeEEEcccCc
Confidence            467778888899999999999999988899999999775421          11111222111       2799999999


Q ss_pred             CCCeEEEEEEEcCCC--ceEEEEEEEEeccccCCCCCccccCCCeeeecCCCeEEEEEE-EeeCCCCeEEEEECCE-ecc
Q psy7036          79 TDAGLYKVKAKNKMG--EVAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECR-IQADPAPTVIWSHSGV-QVK  154 (254)
Q Consensus        79 ~d~G~Y~C~~~~~~~--~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~-~~~~~~~~~~W~~~~~-~~~  154 (254)
                      .|+|.|+|.+.+..|  .....+.|.|..      +|.+........+..|+.+.|.|. ..+.|.+.+.|++++. .+.
T Consensus        75 ~D~G~Y~C~~~~~~g~~~~~~~~~l~V~~------~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~l~  148 (212)
T 1f97_A           75 KDNGEYTCMVSEEGGQNYGEVSIHLTVLV------PPSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLT  148 (212)
T ss_dssp             GGCEEEEEEEEETTSSSEEEEEEEEEEEB------CCCCCEEECCSEEETTSCEEEEEECSCCBSCCEEEEEETTEESBC
T ss_pred             ccCeEEEEEEEccCCCcccEEEEEEEEEc------CCCCcccCCccccCCCCeEEEEEEcccCcCCCEEEEEeCCccccc
Confidence            999999999999876  445667777763      333322223346778999999999 7889999999999998 765


Q ss_pred             cCCcc-------eEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcc--eEEEEEEEe
Q psy7036         155 EDKRH-------KFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGES--NATISLNFD  207 (254)
Q Consensus       155 ~~~~~-------~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~--~~~~~~~v~  207 (254)
                      .....       .+......    ..|.|.++..+|.|.|+|.|.|..|..  +..+.|.|.
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~----~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~~~l~V~  206 (212)
T 1f97_A          149 ADAKKTRAFMNSSFTIDPKS----GDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMDAV  206 (212)
T ss_dssp             -----CBSCSSSCEEECTTT----CCEEESSCCGGGCEEEEEEEECSSSCCEECCCEEEEEE
T ss_pred             ccccccccccCceeEecCCC----ceEEEEecChhhCcEEEEEEccccCCccccceEEEEEE
Confidence            43321       12222111    279999999999999999999999987  556666665

>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}

Probab=99.95  E-value=2.6e-27  Score=177.97  Aligned_cols=220  Identities=13%  Similarity=0.203  Sum_probs=143.8

Q ss_pred             ceeecCCCeEEEEEEEee-CCCCceEEEeCCEEee---------------eCCcceEEEeecCCcceEEEEEEeccCCCC
Q psy7036          17 LRQEDEGNRLIFECQLLC-NPKPDIVWFRGETQLS---------------EDTRTVMKTTPIGTNKYLVALELDDVIETD   80 (254)
Q Consensus        17 ~~~v~~g~~v~l~C~~~~-~~~~~v~W~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d   80 (254)
                      .+.+.+|++++|.|.+.+ .+.+.++|+|++....               .....++....  .....++|.|.+++.+|
T Consensus         8 ~vtv~~G~~v~L~C~v~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~sL~I~~v~~~D   85 (308)
T 4fom_A            8 HVTAVWGKNVSLKCLIEVNETITQISWEKIHGKSSQTVAVHHPQYGFSVQGEYQGRVLFKN--YSLNDATITLHNIGFSD   85 (308)
T ss_dssp             SCEEETTSCEEECCBCCCSSCEEEEEEEEESSSCEEEEEEECSSSCEEECTTTTTTEEESC--CSSSBCCEEECSCCGGG
T ss_pred             EeEEEcCCcEEEEEEecCCCCCcEEEEEECCCCCCceEEEecCCCCceecCcccceEEeec--cCCCceEEEEccCCHHH
Confidence            567889999999999864 4456799998643211               01111121111  11122379999999999


Q ss_pred             CeEEEEEEEcC-CCceEEEEEEEEeccccCCCCCccccCCCeeeecCCCeEEEEEEE-eeCCCCeEEEEECCEecccCCc
Q psy7036          81 AGLYKVKAKNK-MGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRI-QADPAPTVIWSHSGVQVKEDKR  158 (254)
Q Consensus        81 ~G~Y~C~~~~~-~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~~~~~~~~W~~~~~~~~~~~~  158 (254)
                      +|.|+|.+.+. .+.......+.+...    ..+.....+.......|+.+.|.|.+ .+.|.+.+.|++++..+.... 
T Consensus        86 ~G~Y~C~a~n~~~~~~~~~~~~~v~~~----~~~~~~~~~~~~~~~~~~~~~l~C~~~~g~P~~~i~W~~~~~~~~~~~-  160 (308)
T 4fom_A           86 SGKYICKAVTFPLGNAQSSTTVTVLVE----PTVSLIKGPDSLIDGGNETVAAICIAATGKPVAHIDWEGDLGEMESTT-  160 (308)
T ss_dssp             CEEEEEEEEETTTEEEEEEEEEEEEBC----CEEEEEECSSCCCTTCSCEEEEEEEEEEEBSCCEEEECCCSSBCCEEE-
T ss_pred             CEEEEEEEeeCCCcceeeeeEEEeeec----cccccccccceeEEcCCceEEEEEEecCCcCCceEEEEECCccccccc-
Confidence            99999999875 445555666666531    11112223334445568899999985 578999999999987764321 


Q ss_pred             ceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcceEEEEEEEecCCCCCCCCCCCCeeecCCcc-ccccCCCCc
Q psy7036         159 HKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVT-KQSDDDLND  237 (254)
Q Consensus       159 ~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~p~~~~~~~~-~~~~~g~~~  237 (254)
                        ...........+.|.|.....+|.|.|+|.|.|..+.......+.+...        .+|.+...+.. ..+..|+ .
T Consensus       161 --~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~l~V~--------~~P~~~~~~~~~~~~~~g~-~  229 (308)
T 4fom_A          161 --TSFPNETATIISQYKLFPTRFARGRRITCVVKHPALEKDIRYSFILDIQ--------YAPEVSVTGYDGNWFVGRK-G  229 (308)
T ss_dssp             --EECTTSCEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECCCC--------EEEEECCBCCCSCEETTCC-S
T ss_pred             --ceeeeecccccccceEEeeeecCCccEEEEEEccCCCCceEEeEEEEEe--------cCCeeEEcccceeeeeccc-c
Confidence              1111222233457999999999999999999998876654444443321        24555444433 3445566 9


Q ss_pred             EEEEEEEeccCCC-ceeC
Q psy7036         238 IVIECRLVGEPEP-TISW  254 (254)
Q Consensus       238 ~~l~C~~~~~p~p-~~~W  254 (254)
                      +.|.|.+.|.|.| .+.|
T Consensus       230 v~l~C~~~g~P~p~~v~W  247 (308)
T 4fom_A          230 VNLKCNADANPPPFKSVW  247 (308)
T ss_dssp             CEEECCEEEESCEEEEEC
T ss_pred             EEEEEEEecCCCCcEEEE
Confidence            9999999999998 5888

>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1

Probab=99.95  E-value=2.1e-27  Score=186.80  Aligned_cols=226  Identities=18%  Similarity=0.231  Sum_probs=150.8

Q ss_pred             eeEeCCCceeecCCCeEEEEEEEeeCCC----CceEEEeCC--EEe---e---------eCCcceEEEeecCCcceEEEE
Q psy7036          10 SFTQKPQLRQEDEGNRLIFECQLLCNPK----PDIVWFRGE--TQL---S---------EDTRTVMKTTPIGTNKYLVAL   71 (254)
Q Consensus        10 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~----~~v~W~~~~--~~~---~---------~~~~~~~~~~~~~~~~~~~~l   71 (254)
                      .|++.|..+.+.+|++++|.|.+.+.+.    +.+.|+|++  ..+   .         ...++...  ..   ...+.|
T Consensus         3 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~--~~---~~~~~L   77 (438)
T 1qgc_4            3 VLTQSPASLAVSLGQRATISCRASESVDSSGHSFMHWYQQKPGQPPKLLIYRASNLESGIPDRFSGS--GS---RTDFTL   77 (438)
T ss_dssp             CEEEECSEEEECTTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEESSSSCBCSSCCTTEEEE--EE---TTEEEE
T ss_pred             ceEecCCeEEeeCCCCEEEEEecCCCcccCCcceEEEEEECCCCCcEEEEEECcccCCCccCcEEEE--cc---CCcEEE
Confidence            4667788889999999999999987765    489999963  211   1         01222221  11   123479


Q ss_pred             EEeccCCCCCeEEEEEEEcCCCce-EEEEEEEEeccccCCCCCccccCCCeeeecCCCeEEEEEEEee-CCCC-eEEEEE
Q psy7036          72 ELDDVIETDAGLYKVKAKNKMGEV-AASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQA-DPAP-TVIWSH  148 (254)
Q Consensus        72 ~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~~~~-~~~W~~  148 (254)
                      .|.+++.+|+|.|+|.+.|..+.. .....|.|...   ..+|.+...........|+.+.|.|.+.+ .|.+ .+.|++
T Consensus        78 ~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~l~V~~~---~~~P~v~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~v~W~k  154 (438)
T 1qgc_4           78 TIDPVEADDVATYYCQQSNEVPLTFGAGTKLDLKRA---DAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKI  154 (438)
T ss_dssp             EESSCCGGGCEEEEEEECSSTTCCBCCCEEEEECCC---CBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCEEEEEEE
T ss_pred             EeCCCcCcCCeeEEEEEecCCCccccCceeEEecCC---CCCCEEEecCCChhhccCCceEEEEEEccccCCCcEEEEEE
Confidence            999999999999999999877642 33456666421   12444433222222335779999999987 6777 899999


Q ss_pred             CCEecccCCcceEEE--cCCCC-ceeeEEEEccCCCCCceeEEEEEEcCCCcceEEEEEEEecCCCCCCCCCCCCeeecC
Q psy7036         149 SGVQVKEDKRHKFSI--DKDGH-SYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTER  225 (254)
Q Consensus       149 ~~~~~~~~~~~~~~~--~~~~~-~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~p~~~~~  225 (254)
                      ++..+..........  ..++. ...+.|.|.++..+|+|.|+|.|.|..+.......+....          .+.....
T Consensus       155 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~~~~----------~~~~~~~  224 (438)
T 1qgc_4          155 DGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNE----------CEVMLVE  224 (438)
T ss_dssp             TTEEECTTEEEEEECCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEEETTCSSCEEEEEETTC-----------CCEEEE
T ss_pred             CCEEcCCCceeccccccCCCCcEEEEEEEEEeCcccCCCCeEEEEEEecccCCceeccccccc----------ceeEEec
Confidence            998876541111111  12221 2245899999999999999999999888764444433210          1122223


Q ss_pred             CccccccCCCCcEEEEEEEeccC--CCceeC
Q psy7036         226 PVTKQSDDDLNDIVIECRLVGEP--EPTISW  254 (254)
Q Consensus       226 ~~~~~~~~g~~~~~l~C~~~~~p--~p~~~W  254 (254)
                      +....+.+|+ .+.|.|.+.|.|  .+.+.|
T Consensus       225 ~~~~~v~~G~-~v~L~C~~~g~p~~~~~v~W  254 (438)
T 1qgc_4          225 SGGGLVKPGG-SLKLSCTASGFIFNRCAMSW  254 (438)
T ss_dssp             ECCEEECTTC-CEEEEEEEESSCGGGSCEEE
T ss_pred             CCceEEecCC-cEEEEEEEcccccCCcEEEE
Confidence            4555688899 999999999998  568888

>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2

Probab=99.95  E-value=2.7e-27  Score=180.55  Aligned_cols=235  Identities=12%  Similarity=0.212  Sum_probs=144.3

Q ss_pred             eCCCceeecCCCeEEEEEEEeeC--CCCceEEEeC--CEEee-----------------eCCcceEEEeecCCcceEEEE
Q psy7036          13 QKPQLRQEDEGNRLIFECQLLCN--PKPDIVWFRG--ETQLS-----------------EDTRTVMKTTPIGTNKYLVAL   71 (254)
Q Consensus        13 ~~~~~~~v~~g~~v~l~C~~~~~--~~~~v~W~~~--~~~~~-----------------~~~~~~~~~~~~~~~~~~~~l   71 (254)
                      ..|....+.+|++++|.|.+.+.  +.+.+.|||+  +..+.                 ...++.+...   .......|
T Consensus         5 ~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~---~~~~~~~L   81 (344)
T 1za6_B            5 VQSGAEVVKPGASVKISCKASGYTFTDHAIHWVKQNPGQRLEWIGYFSPGNDDFKYNERFKGKATLTAD---TSASTAYV   81 (344)
T ss_dssp             EECCCEEECTTCCEEEEEEEESSCTTSSCEEEEEECSSSCEEEEEEEETTTTEEEECTTTBTTEEEEEE---TTTTEEEE
T ss_pred             eCCCCeEEeCCCcEEEEEEcCCccccccEEEEEEECCCCCcEEEEEEecCCCceEECcccCCcEEEEEe---cCCCEEEE
Confidence            34556789999999999999875  3678999986  32211                 0122222211   11233489


Q ss_pred             EEeccCCCCCeEEEEEEEcCCCceEEEEEEEEeccccCCCCCccccCCCeeeecCCCeEEEEEEEeeC-CC-CeEEEEEC
Q psy7036          72 ELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQAD-PA-PTVIWSHS  149 (254)
Q Consensus        72 ~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~-~~~~W~~~  149 (254)
                      .|.+++.+|+|.|+|.+.+..+.......|.|....  ..+|.+........+..|+.+.|.|.+.+. |. +.+.|+++
T Consensus        82 ~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~l~V~~~~--~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~  159 (344)
T 1za6_B           82 ELSSLRSEDTAVYFCTRSLNMAYWGQGTLVTVSSAS--TKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSG  159 (344)
T ss_dssp             EECSCCGGGCEEEEEEETTTTCEECCCEEEEECSSC--CBCCEEEEECCSCTTTSSSEEEEEEEEEEEBSSCCCEEETTT
T ss_pred             EECCCCcccCEEEEEEEecCcceecCcEEEEEecCC--CCCCeEEEccccccccCCCcEEEEEEEeeEECCCeEEEEecC
Confidence            999999999999999999865444445667775211  123333322222335689999999999886 54 68999999


Q ss_pred             CEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcceEEEEEEEecC-----------CCC---CCC
Q psy7036         150 GVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFDSD-----------DAP---VPG  215 (254)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~v~~~-----------~~~---~~~  215 (254)
                      +..+............+.+...+.|.|.++..+| |.|+|.|.|..+.......+.+...           ...   ...
T Consensus       160 g~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~  238 (344)
T 1za6_B          160 ALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKVEPKSCDKTHTCPPCGGGSSGGGSGG  238 (344)
T ss_dssp             TBCTTEEECCCEECTTSCEEEEEEEEEETTHHHH-BCEEEEEEEGGGTEEEEEEECCCCC--------------------
T ss_pred             CccCceeECCCeECCCCCEEEEEEEEEcHHHcCC-CcEEEEEEeCCCCccceEeecccccccccccCCCCCCccccccCC
Confidence            8764211111111111222234579999888878 9999999998876544433321100           000   001


Q ss_pred             CCCCCeeecCCccccccCCCCcEEEEEEEecc-CC-CceeC
Q psy7036         216 EGTKPVFTERPVTKQSDDDLNDIVIECRLVGE-PE-PTISW  254 (254)
Q Consensus       216 ~~~~p~~~~~~~~~~~~~g~~~~~l~C~~~~~-p~-p~~~W  254 (254)
                      ...+|.+...+.......|+ .+.|.|.+.|. |+ +.++|
T Consensus       239 ~~~~P~v~~~~~~~~~~~~~-~~~L~C~~~g~~P~~~~v~W  278 (344)
T 1za6_B          239 QPREPQVYTLPPSRDELTKN-QVSLTCLVKGFYPSDIAVEW  278 (344)
T ss_dssp             CCBCCEEEEECCCGGGGGSS-SEEEEEEEEEEBSSCCEEEE
T ss_pred             CCcCCEEEEeCCChHhccCC-cEEEEEEEeeEECCCeEEEE
Confidence            12356555443333345688 79999999996 43 57888

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}

Probab=99.95  E-value=3.9e-27  Score=175.57  Aligned_cols=185  Identities=16%  Similarity=0.358  Sum_probs=137.7

Q ss_pred             CCCCeeEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEE
Q psy7036           6 DFAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYK   85 (254)
Q Consensus         6 ~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~   85 (254)
                      ..+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+......+......+      .|.|.+++..|+|.|+
T Consensus        96 ~~~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~------~L~i~~v~~~d~G~Y~  169 (291)
T 2wim_A           96 YQKLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANN------NLQILNINKSDEGIYR  169 (291)
T ss_dssp             ECCCBCCSCCCSEEEETTSCEEECCCCBCSSCCEEEEECC----CBCCCSSEEECTTS------CEEETTCCGGGCEEEE
T ss_pred             cCCcceEeCCCChhhcCCCCEEEEEEEccCCCCEEEEEECCccccccCCceEEEccCC------CEEEEecchhhCEEEE
Confidence            3456666677777899999999999999889999999999988765433333333222      6999999999999999


Q ss_pred             EEEEcCCCceE--EEEEEEEeccccCCCCCccccCCC--eeeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcceE
Q psy7036          86 VKAKNKMGEVA--ASINLNFSREQIDGLAPTFLKKPS--IRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKF  161 (254)
Q Consensus        86 C~~~~~~~~~~--~~~~l~v~~~~~~~~~~~~~~~~~--~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~  161 (254)
                      |.+.+..+...  ..+.+.|.      .+|.+.....  ...+..|+.+.|.|.+.+.|.+.+.|++++..+....... 
T Consensus       170 C~~~n~~~~~~~~~~~~~~v~------~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~-  242 (291)
T 2wim_A          170 CEGRVEARGEIDFRDIIVIVN------VPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYI-  242 (291)
T ss_dssp             EEEEETTTTEEEEEEEEEEEE------BCCCCBCSCSEEECCSSSCCEEEEECBCCCBSCCEEEEEETTEECCCTTTEE-
T ss_pred             EEEEECCCCeeEEeeEEEEec------cCCccccCcccccceecCCCeEEEEEEeecCCCCeEEEEECCEECcCCccEE-
Confidence            99998775433  34455554      3444433332  3456789999999999999999999999999887655432 


Q ss_pred             EEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcceEEEEEEEec
Q psy7036         162 SIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFDS  208 (254)
Q Consensus       162 ~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~v~~  208 (254)
                       ....+    ..|.|.++..+|.|.|+|.|.|..|....++.+.|..
T Consensus       243 -~~~~~----~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~  284 (291)
T 2wim_A          243 -LKGSN----TELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFV  284 (291)
T ss_dssp             -ECSTT----CEEEEESCCSTTCEEEEEEEEETTEEEEEEEEEEC--
T ss_pred             -EcCCc----cEEEEeeCCcccCEEEEEEEEECCCceeeeEEEEEEE
Confidence             22222    2799999999999999999999999999998888764

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A*

Probab=99.95  E-value=4.5e-27  Score=173.01  Aligned_cols=200  Identities=16%  Similarity=0.194  Sum_probs=143.4

Q ss_pred             CCeeEeCCCceeecCCCeEEEEEEEee-CCCC--ceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEecc---CCCCC
Q psy7036           8 APSFTQKPQLRQEDEGNRLIFECQLLC-NPKP--DIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDV---IETDA   81 (254)
Q Consensus         8 ~p~~~~~~~~~~v~~g~~v~l~C~~~~-~~~~--~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~---~~~d~   81 (254)
                      +|.+...   ..+.+|++++|.|.+.+ .|.+  .++|+|+|..+..    .+..  .+.     .+.+...   +..|+
T Consensus         6 ~p~~~~~---~~v~~G~~v~l~C~~~g~~p~p~~~v~W~k~~~~l~~----~~~~--~~~-----~~~~~~~~~~~~~d~   71 (265)
T 2oz4_A            6 PPQLVSP---RVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNP----TVTY--GND-----SFSAKASVSVTAEDE   71 (265)
T ss_dssp             CCEEECC---SEEETTEEEEEEEEEESCSCGGGCEEEEEETTEECCC----EEEE--CSS-----EEEEEEEEEECGGGC
T ss_pred             CCccccC---ceEecCCCEEEEEEccCCCCCcceEEEEEeCCEECCc----eEee--CCC-----eEEEEeecccccccC
Confidence            4555432   36889999999999988 6766  9999999998754    1111  111     3444444   77888


Q ss_pred             eE--EEEEEEcCCCceEEEEEEEEeccccCCCCCccccCCCeeeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcc
Q psy7036          82 GL--YKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRH  159 (254)
Q Consensus        82 G~--Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~  159 (254)
                      |.  |+|.+.|..+.....+.|.|...    .+|.+..  ....+.+|+.+.|.|.+.  |.+.+.|  +|..+....  
T Consensus        72 g~g~Y~C~a~n~~~~~~~~~~l~V~~~----p~p~~~~--~~~~v~~G~~v~l~C~~~--p~~~i~W--~g~~~~~~~--  139 (265)
T 2oz4_A           72 GTQRLTCAVILGNQSQETLQTVTIYSF----PAPNVIL--TKPEVSEGTEVTVKCEAH--PRAKVTL--NGVPAQPLG--  139 (265)
T ss_dssp             EEEEEEEEEEETTEEEEEEEEEEEECC----CCCEEEE--SCSEEETTCEEEEEEECC--TTSEEEE--SSCSSSCCS--
T ss_pred             CcceEEEEEecCCCCcEEEEEEEEeCC----CCceeec--CCceecCCCcEEEEEEcc--CCCEEEE--CCEEccCCC--
Confidence            85  99999999888888888888631    1233332  334567899999999987  8889999  776652211  


Q ss_pred             eEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCC-Ccce---EEEEEEEecCCCCCCCCCCCCeeec--CCccccccC
Q psy7036         160 KFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNEL-GESN---ATISLNFDSDDAPVPGEGTKPVFTE--RPVTKQSDD  233 (254)
Q Consensus       160 ~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~-~~~~---~~~~~~v~~~~~~~~~~~~~p~~~~--~~~~~~~~~  233 (254)
                                ..+.|.|.....+|.|.|+|.|.|.. |...   ..+.|.|..          +|.+..  .|....+.+
T Consensus       140 ----------~~~~l~i~~~~~~~~g~Y~C~a~n~~~g~~~~~s~~~~l~V~~----------~p~~~~~~~p~~~~v~~  199 (265)
T 2oz4_A          140 ----------PRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLY----------GPRLDERDCPGNWTWPE  199 (265)
T ss_dssp             ----------SEECCEEECCGGGTTEEEEEEEEEECSSSEEEEEEEEEEEEEE----------EEECCGGGSCSEEEEET
T ss_pred             ----------CcEEEEEccccccCCceEEEEEEcCCCCCcccccccEEEEEEe----------CCccccccCCCccEEcC
Confidence                      11268889899999999999998654 6554   566677664          333332  244557788


Q ss_pred             CCCcEEEEEEEeccCCCceeC
Q psy7036         234 DLNDIVIECRLVGEPEPTISW  254 (254)
Q Consensus       234 g~~~~~l~C~~~~~p~p~~~W  254 (254)
                      |+ .+.|.|.+.|+|.|.++|
T Consensus       200 g~-~~~l~C~~~g~P~p~i~W  219 (265)
T 2oz4_A          200 NS-QQTPMCQAWGNPLPELKC  219 (265)
T ss_dssp             TC-EECCCCCCEEESCCEEEE
T ss_pred             CC-eEEEEeECccCCCCeEEE
Confidence            99 999999999999999998

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}

Probab=99.95  E-value=1.4e-27  Score=178.09  Aligned_cols=215  Identities=12%  Similarity=0.093  Sum_probs=153.6

Q ss_pred             CCCCeeEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEE
Q psy7036           6 DFAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYK   85 (254)
Q Consensus         6 ~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~   85 (254)
                      ..+|.|...+....+.+|++++|.|.+.+.    ++|++++..     ....  .   .....+.|.|.+++..|+|.|+
T Consensus         2 ~~~P~i~~~~~~~~v~~G~~v~L~C~~~~~----v~W~~~~~~-----~~~~--~---~~~~~~~L~i~~~~~~d~G~Y~   67 (292)
T 4dkd_C            2 GSIPVIEPSVPELVVKPGATVTLRCVGNGS----VEWDGPPSP-----HWTL--Y---SDGSSSILSTNNATFQNTGTYR   67 (292)
T ss_dssp             --CCEEESCCSSCEECTTCCEEEEEECSSC----CCBCCCCCS-----SCEE--C---CBTTEEEEEESSCCGGGCSCEE
T ss_pred             CCCceecCCCCeEEEcCCCcEEEEEcCCCc----eEEccCCCC-----ceEE--e---ccCceEEEEEcccccccCEEEE
Confidence            357899999989999999999999999763    999976532     1111  1   1112348999999999999999


Q ss_pred             EEEEcCCCceEEEEEEEEeccccCCCCCccccCCCeeeecCCCeEEEEEEEeeCCC--CeEEEEECC-EecccCCcceEE
Q psy7036          86 VKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQADPA--PTVIWSHSG-VQVKEDKRHKFS  162 (254)
Q Consensus        86 C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~--~~~~W~~~~-~~~~~~~~~~~~  162 (254)
                      |.+.|..+.....+.|.|..     .+..+...+....+.+|+.+.|.|.+.+ +.  +.+.|++++ ..+....  ...
T Consensus        68 C~~~n~~~~~~~~~~l~V~~-----~~~~~~~~~~~~~v~~g~~v~l~C~~~~-~~~~~~v~W~~~~~~~~~~~~--~~~  139 (292)
T 4dkd_C           68 CTEPGDPLGGSAAIHLYVKD-----PARPWNVLAQEVVVFEDQDALLPCLLTD-PVLEAGVSLVRVRGRPLMRHT--NYS  139 (292)
T ss_dssp             ECCCC----CCEEECCEECC-----SSCCEEESCSEEEEETTSCEECCEEESS-GGGGSSEEEEEGGGCCCCSSC--CEE
T ss_pred             EEEccCCCCcceEEEEEEcC-----ccccccccCCeEEEcCCCcEEEeeeCCC-CCcceeEEEEecCCCccccCC--ccc
Confidence            99998887777777888763     2222344455677889999999999987 44  689999974 4443222  222


Q ss_pred             EcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcc-eEEEEEEEecCCCCCCCCCCCCeeecCCccccccCCCCcEEEE
Q psy7036         163 IDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGES-NATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIE  241 (254)
Q Consensus       163 ~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~l~  241 (254)
                      ...++     .|.|.+++.+|.|.|+|.+.|..+.. ...+.|.|....      ..+|.+...+....+.+|+ .+.|.
T Consensus       140 ~~~~~-----~L~i~~~~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~~------~~~p~i~~~~~~~~~~~g~-~v~l~  207 (292)
T 4dkd_C          140 FSPWH-----GFTIHRAKFIQSQDYQCSALMGGRKVMSISIRLKVQKVI------PGPPALTLVPAELVRIRGE-AAQIV  207 (292)
T ss_dssp             CCSSS-----CCEETTCCGGGCSEEEEEECSTTSCEECCCEEEEEECCC------CSSCEEEEESSCBCCCSSS-CEEEE
T ss_pred             ccCCc-----eEEECCCCHHHCeEEEEEEEeCCCceeEEEEEEEEeCCC------CCCCeEEccCCceeEecCC-CEEEE
Confidence            33332     59999999999999999999887754 346777776421      1267777777777777899 99999


Q ss_pred             EEEeccCCC-ceeC
Q psy7036         242 CRLVGEPEP-TISW  254 (254)
Q Consensus       242 C~~~~~p~p-~~~W  254 (254)
                      |.+.+.|.+ .+.|
T Consensus       208 C~~~~~~~~~~~~w  221 (292)
T 4dkd_C          208 CSASSVDVNFDVFL  221 (292)
T ss_dssp             EEEEESSSCCEEEC
T ss_pred             EEecCCCCceEEEE
Confidence            999987754 5776

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J

Probab=99.95  E-value=3.2e-26  Score=186.31  Aligned_cols=227  Identities=15%  Similarity=0.243  Sum_probs=159.1

Q ss_pred             CCCCCCCeeEeCCCceeecCCCeEEEEEEEeeC-CCCceEEEeCCEEee----eC-------CcceEEEeecCCcceEEE
Q psy7036           3 IAEDFAPSFTQKPQLRQEDEGNRLIFECQLLCN-PKPDIVWFRGETQLS----ED-------TRTVMKTTPIGTNKYLVA   70 (254)
Q Consensus         3 ~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~-~~~~v~W~~~~~~~~----~~-------~~~~~~~~~~~~~~~~~~   70 (254)
                      +.+..+|.|...+....+.+|++++|.|.+.+. +.+.+.|+|++....    ..       ...+......+.....+.
T Consensus       107 l~V~~~p~~~~~~~~~~v~~G~~v~l~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~  186 (585)
T 2ocw_A          107 LEVSQGPGLLNDTKVYTVDLGRTVTINCPFKTENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIRLDIQGTGQLLFS  186 (585)
T ss_pred             EEEecCccccCCCccEEEEcCCCEEEEEEecCCCCCccEEEEECCCCCceEEecCCcccCccccCcEEEEeccCCCcEEE
Confidence            344567888888888899999999999999864 467899999875321    10       012223333333344558


Q ss_pred             EEEeccCCCCCeEEEEEEEcCCCceEEEEEEEEeccccCCCCCccccCCCeeeecCCCeEEEEEEEeeCCC---CeEEEE
Q psy7036          71 LELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQADPA---PTVIWS  147 (254)
Q Consensus        71 l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~---~~~~W~  147 (254)
                      |.|.+++..|+|.|+|.+.|..+.....+.|.|..     .+      +..+.+.+|+.+.|.|.+ +.+.   +.+.|+
T Consensus       187 L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~-----~~------p~~~~~~~G~~v~l~C~~-~~~~~~~~~~~w~  254 (585)
T 2ocw_A          187 VVINQLRLSDAGQYLCQAGDDSNSNKKNADLQVLK-----PE------PELVYEDLRGSVTFHCAL-GPEVANVAKFLCR  254 (585)
T ss_pred             EEEccCChhHCeEEEEEeccCCccccceEEEEEcc-----CC------CceeEEcCCCcEEEEEEc-CCCCCCceEEEEE
Confidence            99999999999999999999988887888888863     12      233456789999999997 4443   578886


Q ss_pred             -ECCEe---cccC-------CcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcce----EEEEEEEecCCCC
Q psy7036         148 -HSGVQ---VKED-------KRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESN----ATISLNFDSDDAP  212 (254)
Q Consensus       148 -~~~~~---~~~~-------~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~----~~~~~~v~~~~~~  212 (254)
                       +++..   +...       ...++............|.|.+++.+|.|.|+|.|.|..+...    ..+.|.|..    
T Consensus       255 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~L~i~~v~~~d~G~Y~C~a~n~g~~~~~~~~~~~~l~V~~----  330 (585)
T 2ocw_A          255 QSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLRKEDAGRYLCGAHSDGQLQEGSPIQAWQLFVNE----  330 (585)
T ss_pred             eCCCCCcceEEeCCCcCCcccCCceEeeccCCCcEEEEEEccCChhhCEEEEEEEEcCCCccccCceeeEEEEEec----
Confidence             77732   1110       1112222211111122699999999999999999999533321    667777764    


Q ss_pred             CCCCCCCCeeecCCccccccCCCCcEEEEEEEeccCCCce
Q psy7036         213 VPGEGTKPVFTERPVTKQSDDDLNDIVIECRLVGEPEPTI  252 (254)
Q Consensus       213 ~~~~~~~p~~~~~~~~~~~~~g~~~~~l~C~~~~~p~p~~  252 (254)
                            +|.+...+....+.+|+ .+.|.|.+.+.|.|.+
T Consensus       331 ------~p~~~~~~~~~~~~~G~-~v~l~C~~~~~p~p~i  363 (585)
T 2ocw_A          331 ------ESTIPRSPTVVKGVAGS-SVAVLCPYNRKESKSI  363 (585)
T ss_pred             ------ccccccCCcceEEEeCC-cEEEEEecCCCCCccE
Confidence                  45555567777788999 9999999999999876

>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A

Probab=99.95  E-value=3.1e-27  Score=178.73  Aligned_cols=239  Identities=14%  Similarity=0.146  Sum_probs=145.0

Q ss_pred             CCCCeeEeCCCceeecCC--CeEEEEEEEeeC-C-CCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCC
Q psy7036           6 DFAPSFTQKPQLRQEDEG--NRLIFECQLLCN-P-KPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDA   81 (254)
Q Consensus         6 ~~~p~~~~~~~~~~v~~g--~~v~l~C~~~~~-~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~   81 (254)
                      ..+|.+...+.......|  ++++|.|.+.+. | .+.|+|+|+|..+............++.....+.|.|.+....|+
T Consensus         5 ~~~P~v~~~~~~~~~~~~~~~~v~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~   84 (323)
T 2wqr_A            5 FTPPTVKILQSSCDGGGHFPPTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLSTASTTQEGELASTQSELTLSQKHWLSD   84 (323)
T ss_dssp             CCCCCCEEEEECCCTTSCCCSEEEEEEEEEEECCCCEEEEEEETTEECCGGGEEEEEEEETTEEEEEEEEEEEHHHHHTT
T ss_pred             CCCCEEEEeCCChHHhccCCCcEEEEEEEeCeECCCeEEEEEECCEEcccceecCCcCccCCcEEEEEEEEEcHHHcCCC
Confidence            456776655433333344  699999999885 4 478999999998865432211111122223345788988888899


Q ss_pred             eEEEEEEEcCCCceEEEEEEEEeccccCCCCCccccCCCeeeecCCCeEEEEEEEeeC-CCC---eEEEEECC-EecccC
Q psy7036          82 GLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQAD-PAP---TVIWSHSG-VQVKED  156 (254)
Q Consensus        82 G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~---~~~W~~~~-~~~~~~  156 (254)
                      |.|+|.+.|..+.....+.+.+..  ....++.+...+....+..|+.+.|.|.+.+. |.+   .+.|++++ ..+...
T Consensus        85 g~Y~C~a~n~~~~~~~~~~~~~~~--~~~~p~v~~~~p~~~~v~~G~~v~L~C~~~g~~P~p~~~~i~W~k~~g~~~~~~  162 (323)
T 2wqr_A           85 RTYTCQVTYQGHTFEDSTKKCADS--NPRGVSAYLSRPSPFDLFIRKSPTITCLVVDLAPSKGTVQLTWSRASGKPVNHS  162 (323)
T ss_dssp             CCEEEEEEETTEEEEEEECCCCCS--SGGGCEEEECCCCHHHHHTSSCCEEEEEEEEECCCSSCCEEEEEETTCCCCCCC
T ss_pred             CcEEEEEEeCCCCcceeeecCCCC--CCCCCEEEEcCCCHHHhccCCeEEEEEEEeccCCCCCceEEEEEECCCcccccc
Confidence            999999998776543332211100  00012122333344456789999999998885 455   89999975 433221


Q ss_pred             CcceEEEcCCCC-ceeeEEEEccCCCCCceeEEEEEEcCCCcceEEEEEEEecCCCCCCCCCCCCeeecCCccccccCCC
Q psy7036         157 KRHKFSIDKDGH-SYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDL  235 (254)
Q Consensus       157 ~~~~~~~~~~~~-~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~g~  235 (254)
                      .. ......++. ...+.|.|.+++.+|.|.|+|.|.|..+.....+.+.+..      ....+|.+...+.......|+
T Consensus       163 ~~-~~~~~~~g~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~~~~~~~~~v~~~~------~~~~~P~v~~~~~~~~~~~g~  235 (323)
T 2wqr_A          163 TR-KEEKQRNGTLTVTSTLPVGTRDWIEGETYQCRVTHPHLPRALMRSTTKTS------GPRAAPEVYAFATPEWPGSRD  235 (323)
T ss_dssp             CC-EEEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECTTSSSCEEEEECCCC------SCCBCCEEEEEECCCCTTCTT
T ss_pred             cC-CCccCCCCCEEEEEEEEECHHHccCCCCEEEEEECCCCCCCeeeEEEccC------CCCCCCEEEEeCCChHHhcCC
Confidence            11 111111221 2345799999999999999999999875443343332210      011255554433332334488


Q ss_pred             CcEEEEEEEecc-CCC-ceeC
Q psy7036         236 NDIVIECRLVGE-PEP-TISW  254 (254)
Q Consensus       236 ~~~~l~C~~~~~-p~p-~~~W  254 (254)
                       .+.|.|.+.|. |.+ .++|
T Consensus       236 -~~~l~C~~~g~~p~~~~v~W  255 (323)
T 2wqr_A          236 -KRTLACLIQNFMPEDISVQW  255 (323)
T ss_dssp             -EEEEEEEEEEEBSSCCEEEE
T ss_pred             -cEEEEEEeeeeeCCCcEEEE
Confidence             99999999985 443 6888

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*

Probab=99.95  E-value=6e-27  Score=165.44  Aligned_cols=166  Identities=17%  Similarity=0.266  Sum_probs=127.2

Q ss_pred             CCCeeEeCCCceeecCCCeEEEEEEEeeCCCCc-eEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEE
Q psy7036           7 FAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPD-IVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYK   85 (254)
Q Consensus         7 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~-v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~   85 (254)
                      ..|.+...|....+.+|++++|.|.+.+.+.+. +.|+|+|..+....               ..|.|.+++.+|+|.|+
T Consensus         6 p~p~i~~~p~~~~v~~G~~v~L~C~~~~~p~~~~v~W~k~g~~l~~~~---------------~~L~i~~v~~~D~G~Y~   70 (204)
T 3sgj_C            6 PKAVVFLEPQWYRVLEKDSVTLKCQGAYSPEDQSTQWFHNESLISSQA---------------SSYFIDAATVDDSGEYR   70 (204)
T ss_dssp             CBCEEEEESCCSEEETTCCEEEEEECCSSSSCCCEEEEETTEEESCCS---------------SEEEESSCCGGGCEEEE
T ss_pred             CCCeEEEcCCCeEEECCCCEEEEEcCCCCCCCcEEEEEECCEEcccCc---------------cEEEEecccccCCEEEE
Confidence            467788888878899999999999998877665 99999999876543               17999999999999999


Q ss_pred             EEEEcCCCceEEEEEEEEeccccCCCCCccccCCCeeeecCCCeEEEEEEEeeC-CCCeEEEEECCEecccCCcceEEEc
Q psy7036          86 VKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQAD-PAPTVIWSHSGVQVKEDKRHKFSID  164 (254)
Q Consensus        86 C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~~~~W~~~~~~~~~~~~~~~~~~  164 (254)
                      |.+.|...  ...+.|.|..      ++.+...+. ..+.+|+.+.|.|.+.+. |.+.+.|++++..+....       
T Consensus        71 C~a~n~~~--s~~~~l~V~~------~p~~~~~~~-~~v~~G~~v~L~C~~~~~~p~~~v~W~k~g~~~~~~~-------  134 (204)
T 3sgj_C           71 CQTQLSTL--SDPVQLEVHI------GWLLLQAPR-WVFKEEDPIHLRCHSWKNTALHKVTYLQNGKGRKYFH-------  134 (204)
T ss_dssp             EEETTSBC--CCCEEEEEEC------SSEEEECSC-SEEETTCCEEEEEEEGGGCCCEEEEEEETTEEEEEEE-------
T ss_pred             EEeCCCcc--cccEEEEEec------CceEecCCc-eeEeCCCcEEEEEEecCCCCCceEEEEECCcEeeccc-------
Confidence            99987543  3455666652      233333332 567789999999999665 557899999998753211       


Q ss_pred             CCCCceeeEEEEccCCCCCceeEEEEEEcCC-CcceEEEEEEEec
Q psy7036         165 KDGHSYFASLEIIDVTIEDAGKYKVTAKNEL-GESNATISLNFDS  208 (254)
Q Consensus       165 ~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~-~~~~~~~~~~v~~  208 (254)
                      .+     ..|.|.+++.+|+|.|+|.|.|.. +..+..+.|.|..
T Consensus       135 ~~-----~~L~i~~v~~~D~G~Y~C~a~n~~~~~~s~~~~l~V~~  174 (204)
T 3sgj_C          135 HN-----SDFYIPKATLKDSGSYFCRGLVGSKNVSSETVQITITQ  174 (204)
T ss_dssp             EC-----CCEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC
T ss_pred             CC-----ceEEECcCCcccCEEEEEEEEeCCCceecCcEEEEEeC
Confidence            11     279999999999999999999954 4456677777775

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E

Probab=99.95  E-value=2.2e-27  Score=182.32  Aligned_cols=186  Identities=15%  Similarity=0.164  Sum_probs=141.4

Q ss_pred             eeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcCCCceEE
Q psy7036          18 RQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAA   97 (254)
Q Consensus        18 ~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~   97 (254)
                      ..+.+|++++|.|.+.+.|.+.++|++++..+...         .      ..|.|.+++..|+|.|+|.+.+..+....
T Consensus       106 ~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~---------~------~~L~i~~v~~~d~G~Y~C~a~~~~~~~~~  170 (363)
T 1wio_A          106 THLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQG---------G------KTLSVSQLELQDSGTWTCTVLQNQKKVEF  170 (363)
T ss_dssp             SSEESBSCEEEEEECCTTCCCCEEEECSSSCEEEE---------S------SEEEECSBCGGGCEECEEEEEETTEEEEE
T ss_pred             eEEecCCCEEEEEEcCCCCCCeEEEEcCCCccccc---------c------eEEEEeeCChhcCCEEEEEEecCCCeEEE
Confidence            36789999999999988899999999987543211         1      17999999999999999999987666666


Q ss_pred             EEEEEEeccccCCCCCccccCCCeeeecCCCeEEEEEEEee-----CCCCeEEEEECCEeccc--------CCcceEEEc
Q psy7036          98 SINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQA-----DPAPTVIWSHSGVQVKE--------DKRHKFSID  164 (254)
Q Consensus        98 ~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~-----~~~~~~~W~~~~~~~~~--------~~~~~~~~~  164 (254)
                      .+.|.|..      +|..   +....+.+|+.+.|.|.+.+     .|.+.+.|++++..+..        .....+...
T Consensus       171 ~~~l~v~~------~p~~---~~~~~~~~G~~v~l~C~~~~~~~~~~P~p~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~  241 (363)
T 1wio_A          171 KIDIVVLA------FQKA---SSIVYKKEGEQVEFSFPLAFTVEKLTGSGELWWQAERASSSKSWITFDLKNKEVSVKRV  241 (363)
T ss_dssp             CCEECEEC------CSCS---EEEEEEETBCCEEEECCCCCCCCSSCEEEEEEEEESSCCCCCCEEEEEECSSCEEEEEE
T ss_pred             EEEEEEec------CCCC---CCceEEecCCEEEEEEEEecccccCCCceeEEEecCCCCccceEEEEEecCCeeecccc
Confidence            66666652      2221   14556778999999998877     77889999999987654        222111110


Q ss_pred             ---------CCCCceeeEEEEccCCCCCceeEEEEEEcC--CCcceEEEEEEEecCCCCCCCCCCCCeeecCCccccccC
Q psy7036         165 ---------KDGHSYFASLEIIDVTIEDAGKYKVTAKNE--LGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDD  233 (254)
Q Consensus       165 ---------~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~  233 (254)
                               .++   ...|.|.++..+|+|.|+|.|.|.  .|.....+.|.|..             +          .
T Consensus       242 ~~~~~~~~~~~~---~~~L~i~~v~~~d~G~Y~C~a~n~~~~g~~~~~~~l~V~~-------------v----------~  295 (363)
T 1wio_A          242 TQDPKLQMGKKL---PLHLTLPQALPQYAGSGNLTLALEAKTGKLHQEVNLVVMR-------------A----------T  295 (363)
T ss_dssp             ECSSCCBCCSSS---SCEEEESSBCGGGCEEEEEEECBTTTTCCEEEEEEEEEEE-------------E----------C
T ss_pred             ccchhhhcccCC---ceEEEEccCCcCcCcEEEEEEEEhhhcCeEEEEEeEEEEE-------------e----------c
Confidence                     111   127999999999999999999999  88877777777752             1          1


Q ss_pred             CCCcEEEEEEEeccCCCc--eeC
Q psy7036         234 DLNDIVIECRLVGEPEPT--ISW  254 (254)
Q Consensus       234 g~~~~~l~C~~~~~p~p~--~~W  254 (254)
                      |+ .+.|.|.+.|.|.|.  ++|
T Consensus       296 g~-~~~l~C~~~g~p~p~~~i~W  317 (363)
T 1wio_A          296 QL-QKNLTCEVWGPTSPKLMLSL  317 (363)
T ss_dssp             CC-SSSEEEEEESSCCTTCCEEE
T ss_pred             CC-CeeEEEEEccccCCCccEEE
Confidence            66 899999999999988  888

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}

Probab=99.95  E-value=2.2e-26  Score=184.16  Aligned_cols=207  Identities=14%  Similarity=0.168  Sum_probs=137.4

Q ss_pred             CCCceeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcCCC
Q psy7036          14 KPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMG   93 (254)
Q Consensus        14 ~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~   93 (254)
                      .+..+.|.+|++++|.|.+.+.+...+.|++++..+.....+..      .+....+|.|.+++.+|+|.|+|.+.|..+
T Consensus        54 ~~~~~~v~~g~~~~L~c~~~~~~~~~~~W~~~~~~l~~~~~~~~------~~r~~~SL~I~~v~~~D~G~Y~C~~~n~~~  127 (527)
T 3qs9_E           54 EAAAVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDL------QNRGVVSMVILKMTETQAGEYLLFIQSEAT  127 (527)
T ss_dssp             --CEEEECSSCCEEEEEECSCCSSCEEEEEETTEEECCCCBC-----------CEEEEEESSCCSSSCSEEEEEEEC--C
T ss_pred             eeeeEEEeccccEEEEEEEecCCceeEEEEecCCccCcccccCC------CcceEEEEEECcCChhhCeeEEEEEEeccc
Confidence            33478899999999999998888889999999987754433321      112334799999999999999999999887


Q ss_pred             ceEEEEEEEEeccccCCCCCccccCCCeeeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCCCCceeeE
Q psy7036          94 EVAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFAS  173 (254)
Q Consensus        94 ~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (254)
                      .....+.|.|..       ..............+..+.|.|.+.|.|.|.+.|++++..+.....     .....   ..
T Consensus       128 ~~~~~~~v~v~~-------~~~~~~~~p~~~~~~~~~~L~C~a~G~P~P~i~W~~~~~~~~~~~~-----~~~~~---~~  192 (527)
T 3qs9_E          128 NYTILFTVSIRN-------TLLYTLRRPYFRKMENQDALVCISESVPEPIVEWVLCDSQGESCKE-----ESPAV---VK  192 (527)
T ss_dssp             EEEEEEEEEEC------------CEEEEEEEECSSSSCEEEEEEESSCCEEEEEEC------------------C---EE
T ss_pred             cEEEEEEEEECC-------ceeeccCCCcEEecCCceEEEEEEceecCCeEEEEECCCCCccccc-----cCCcE---EE
Confidence            766666666641       1111111112234567778999999999999999998765431110     00000   01


Q ss_pred             EEEccCCCCCceeEEEEEEcCCCcceEE-EEEEEecCCCCCCCCCCCCeeecCCccccccCCCCcEEEEEEEe-ccCCCc
Q psy7036         174 LEIIDVTIEDAGKYKVTAKNELGESNAT-ISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLV-GEPEPT  251 (254)
Q Consensus       174 l~i~~~~~~d~G~y~C~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~l~C~~~-~~p~p~  251 (254)
                      .....+..+|+|.|+|.|.|..|..... +.|.|..          .|.+  .+....+.+|+ .+.|.|.+. |.|.|.
T Consensus       193 ~~~~~~~~~d~G~Y~C~A~N~~G~~~~~~~~l~V~~----------~p~~--~p~~~~v~~G~-~v~L~C~~~~g~p~p~  259 (527)
T 3qs9_E          193 KEEKVLHELFGTDIRCCARNELGRECTRLFTIDLNQ----------TPQT--TLPQLFLKVGE-PLWIRCKAVHVNHGFG  259 (527)
T ss_dssp             ECCSEECCCCSSCEEEEEECSSCEEEEECEEEESSS----------CCCC--SCCEEEECTTS-CEEEEEEEEESSSCCC
T ss_pred             EeeeeccccCCEEEEEEEEeCCCcccceEEEEEEec----------cCcc--CCCceEEeCCC-eEEEEEEEccCCCCeE
Confidence            2223345789999999999999876544 6666653          2222  34456778899 999999996 899999


Q ss_pred             eeC
Q psy7036         252 ISW  254 (254)
Q Consensus       252 ~~W  254 (254)
                      ++|
T Consensus       260 i~W  262 (527)
T 3qs9_E          260 LTW  262 (527)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            999

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*

Probab=99.95  E-value=1.5e-26  Score=180.14  Aligned_cols=171  Identities=26%  Similarity=0.422  Sum_probs=139.0

Q ss_pred             ceeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcCCCceE
Q psy7036          17 LRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVA   96 (254)
Q Consensus        17 ~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~   96 (254)
                      ...+.+|+++.|.|.+.+.|.+.++|++++..+..... ..  ....     ..|.|.+++..|+|.|+|.+.|..|...
T Consensus       231 ~~~~~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~-~~--~~~~-----~~L~i~~~~~~d~G~Y~C~a~n~~g~~~  302 (404)
T 3p3y_A          231 SQMVLRGMDLLLECIASGVPTPDIAWYKKGGDLPSDKA-KF--ENFN-----KALRITNVSEEDSGEYFCLASNKMGSIR  302 (404)
T ss_dssp             EEEEETTSCEEEECCBCCSSCCEEEEEETTBCCCTTTE-EE--EGGG-----TEEEESSCCGGGCEEEEEEEECSSCEEE
T ss_pred             CceEecCCCEEEEEEECCCCCCcEEEEECCEECCCCcc-cc--cccC-----ceEEEccCCHhHCEEEEEEEEeCCCcEE
Confidence            45688999999999999999999999999988765433 11  1111     1799999999999999999999999888


Q ss_pred             EEEEEEEeccccCCCCCccccCCCeeeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcc-eEEEcCCCCceeeEEE
Q psy7036          97 ASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRH-KFSIDKDGHSYFASLE  175 (254)
Q Consensus        97 ~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~  175 (254)
                      ..+.|.|..      +|.+...+....+..|+.+.|.|.+.+.|.+.+.|++++..+...... .... .++     .|.
T Consensus       303 ~~~~l~V~~------~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~-~~~-----~L~  370 (404)
T 3p3y_A          303 HTISVRVKA------APYWLDEPKNLILAPGEDGRLVCRANGNPKPTVQWMVNGEPLQSAPPNPNREV-AGD-----TII  370 (404)
T ss_dssp             EEEEEEEEE------EEEEEECCCCEEECTTCCEEEECEEEEESCCEEEEEETTEEGGGSCCCTTEEE-ETT-----EEE
T ss_pred             EEEEEEEeC------CCeeeccCCcceeecCCcEEEEEEccccCCCceEEEECCEecCCCCCCceEEe-cCC-----EEE
Confidence            888888873      455555556677889999999999999999999999999988755322 2222 222     799


Q ss_pred             EccCCCCCceeEEEEEEcCCCcceEEEEEEEe
Q psy7036         176 IIDVTIEDAGKYKVTAKNELGESNATISLNFD  207 (254)
Q Consensus       176 i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~v~  207 (254)
                      |.++..+|+|.|+|.|.|..|.....+.|.|.
T Consensus       371 i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~  402 (404)
T 3p3y_A          371 FRDTQISSRAVYQCNTSNEHGYLLANAFVSVL  402 (404)
T ss_dssp             ESSCCSSCCCEEEEEEEETTEEEEEEEEEEEC
T ss_pred             EeecCHHHCEEEEEEEEeCCCcEEEEEEEEEE
Confidence            99999999999999999999999888888775

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens}

Probab=99.95  E-value=1.1e-26  Score=163.86  Aligned_cols=186  Identities=17%  Similarity=0.240  Sum_probs=133.6

Q ss_pred             CeeE-eCCCceeecCCCeEEEEEE-EeeCCC-CceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEE
Q psy7036           9 PSFT-QKPQLRQEDEGNRLIFECQ-LLCNPK-PDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYK   85 (254)
Q Consensus         9 p~~~-~~~~~~~v~~g~~v~l~C~-~~~~~~-~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~   85 (254)
                      |.|. ..+....+.+|+++.|.|. +.+.|. +.+.|++++..+...............     .|.|.+++..|+|.|+
T Consensus         8 ~~~~~~~~~~~~v~~G~~v~L~C~~~~~~p~~~~v~W~~~~~~~~~~~~~~~~~~~~~~-----~L~i~~v~~~d~G~Y~   82 (201)
T 3s97_C            8 DPFPPEERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNG-----NLYIANVEASDKGNYS   82 (201)
T ss_dssp             CCCCSSCCCCEEEETTCCEEECCCCCSEESSCCEEEEEESSTTCBCCCSSSEEECTTTC-----CEEESSCCGGGCEEEE
T ss_pred             CccCcCCCceEEEECCCCEEEeccccccCCCceEEEEEECCceeeeeeCCCeEEEcCCC-----eEEECcCCcccCeEEE
Confidence            4443 4557788999999999999 778888 999999998766432222222221111     6999999999999999


Q ss_pred             EEEEcCCCceEE---EEEEEEeccc-cCCCCCccccCCCeeeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcceE
Q psy7036          86 VKAKNKMGEVAA---SINLNFSREQ-IDGLAPTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKF  161 (254)
Q Consensus        86 C~~~~~~~~~~~---~~~l~v~~~~-~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~  161 (254)
                      |.+.+..+....   ...+.+.... ....+|.+........+..|+.+.|.|.+.+.|.+.+.|++++..+...  ..+
T Consensus        83 C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~~~~~~~~--~~~  160 (201)
T 3s97_C           83 CFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVYALMGQNVTLECFALGNPVPDIRWRKVLEPMPST--AEI  160 (201)
T ss_dssp             EEEEEGGGTEEEECCCEEEEEECCSSCCCEEEEEEEECCCEEEETTCCEEEEEEEEEESCCEEEEEETTBCCCTT--CEE
T ss_pred             EEEEecCCCcchhhcccceeeccccccCCCCCceEecCCceEEecCCcEEEEEEccCCCCCceEEEeCCCcCCCc--eee
Confidence            999987655332   2333332111 1112333333334567788999999999999999999999999876533  222


Q ss_pred             EEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcceEEEEEEEe
Q psy7036         162 SIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFD  207 (254)
Q Consensus       162 ~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~v~  207 (254)
                      . ..+.     .|.|.++..+|.|.|+|.|.|..|....++.|.|.
T Consensus       161 ~-~~~~-----~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  200 (201)
T 3s97_C          161 S-TSGA-----VLKIFNIQLEDEGIYECEAENIRGKDKHQARIYVQ  200 (201)
T ss_dssp             E-TTTT-----EEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             c-CCCC-----EEEEccCChhhCEEEEEEEEecCCceeeeEEEEEe
Confidence            2 2222     79999999999999999999999998888888775

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J

Probab=99.95  E-value=5.7e-26  Score=184.87  Aligned_cols=218  Identities=16%  Similarity=0.224  Sum_probs=152.1

Q ss_pred             eCCCceeecCCCeEEEEEEEeeCCC---CceEEEeCCEEe-----eeC-------CcceEEEeecCCcceEEEEEEeccC
Q psy7036          13 QKPQLRQEDEGNRLIFECQLLCNPK---PDIVWFRGETQL-----SED-------TRTVMKTTPIGTNKYLVALELDDVI   77 (254)
Q Consensus        13 ~~~~~~~v~~g~~v~l~C~~~~~~~---~~v~W~~~~~~~-----~~~-------~~~~~~~~~~~~~~~~~~l~i~~~~   77 (254)
                      ..|..+.+.+|++++|.|.+.+.+.   ..+.|+|++..+     ...       ...++..... .......|.|.+++
T Consensus         5 ~~P~~v~v~~G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~g~~~L~I~~v~   83 (585)
T 2ocw_A            5 FGPEEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNF-PENGTFVVNIAQLS   83 (585)
T ss_pred             cCcceeEEecCCcEEEEEeCCCCcCCCcccEEEEeCCCCCCceEEEECCCcccceeeceEEEEec-CCCCEEEEEECCCC
Confidence            4567788999999999999987654   379999987532     110       0111211110 12233479999999


Q ss_pred             CCCCeEEEEEEEcCCCceEEEEEEEEeccccCCCCCccccCCCeeeecCCCeEEEEEEEeeCC-CCeEEEEECCEecc--
Q psy7036          78 ETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQADP-APTVIWSHSGVQVK--  154 (254)
Q Consensus        78 ~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~-~~~~~W~~~~~~~~--  154 (254)
                      ..|+|.|+|.+.+..+.....+.|.|.      .+|.+...+....+.+|+.+.|.|.+.+.+ .+.+.|+|++....  
T Consensus        84 ~~D~G~Y~C~~~n~~~~~~~~~~l~V~------~~p~~~~~~~~~~v~~G~~v~l~C~~~~~~~~~~v~W~k~~~~~~~~  157 (585)
T 2ocw_A           84 QDDSGRYKCGLGINSRGLSFDVSLEVS------QGPGLLNDTKVYTVDLGRTVTINCPFKTENAQKRKSLYKQIGLYPVL  157 (585)
T ss_pred             cccCEEEEEEcccCCCCceEEEEEEEe------cCccccCCCccEEEEcCCCEEEEEEecCCCCCccEEEEECCCCCceE
Confidence            999999999999888877777888886      455555566677888999999999998654 56799999875421  


Q ss_pred             --cC-------CcceEEEcCCC-CceeeEEEEccCCCCCceeEEEEEEcCCCcceEEEEEEEecCCCCCCCCCCCCeeec
Q psy7036         155 --ED-------KRHKFSIDKDG-HSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTE  224 (254)
Q Consensus       155 --~~-------~~~~~~~~~~~-~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~p~~~~  224 (254)
                        ..       ...+.....++ ......|.|.+++.+|+|.|+|.+.|..+.....+.|.|...         +     
T Consensus       158 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~---------~-----  223 (585)
T 2ocw_A          158 VIDSSGYVNPNYTGRIRLDIQGTGQLLFSVVINQLRLSDAGQYLCQAGDDSNSNKKNADLQVLKP---------E-----  223 (585)
T ss_pred             EecCCcccCccccCcEEEEeccCCCcEEEEEEccCChhHCeEEEEEeccCCccccceEEEEEccC---------C-----
Confidence              10       01112222111 122347999999999999999999999988888888887631         1     


Q ss_pred             CCccccccCCCCcEEEEEEEeccCC---CceeC
Q psy7036         225 RPVTKQSDDDLNDIVIECRLVGEPE---PTISW  254 (254)
Q Consensus       225 ~~~~~~~~~g~~~~~l~C~~~~~p~---p~~~W  254 (254)
                       |....+.+|+ .+.|.|.+ +.|.   +.+.|
T Consensus       224 -p~~~~~~~G~-~v~l~C~~-~~~~~~~~~~~w  253 (585)
T 2ocw_A          224 -PELVYEDLRG-SVTFHCAL-GPEVANVAKFLC  253 (585)
T ss_pred             -CceeEEcCCC-cEEEEEEc-CCCCCCceEEEE
Confidence             2233466788 99999997 4444   45666

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X

Probab=99.95  E-value=4.8e-27  Score=167.28  Aligned_cols=184  Identities=16%  Similarity=0.249  Sum_probs=128.5

Q ss_pred             EeCCCceeecCCCeEEEEEEEeeCC----CCceEEEe----------------CCEEeee---CCcceEEEeecCCcceE
Q psy7036          12 TQKPQLRQEDEGNRLIFECQLLCNP----KPDIVWFR----------------GETQLSE---DTRTVMKTTPIGTNKYL   68 (254)
Q Consensus        12 ~~~~~~~~v~~g~~v~l~C~~~~~~----~~~v~W~~----------------~~~~~~~---~~~~~~~~~~~~~~~~~   68 (254)
                      ...+..+.+.+|++++|.|.+.+.+    .+.+.|++                ++..+..   ....+............
T Consensus         4 ~~~~~~v~v~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~   83 (214)
T 3jz7_A            4 TTPEQRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGRVHFTSNDVKSGD   83 (214)
T ss_dssp             --CEEEEEEETTSCEEECCBCCCCTTCCSCCEEEEEEEESSSSCCSEEEEEEETTEEECCCCGGGTTTEEESCSCGGGTB
T ss_pred             ecCCceEEEecCCCEEEEEEEecCCCCCCcEEEEEEecCCCCCCCceEEEEEeCCeEccccCCccccceEEeccCccCCc
Confidence            3445667889999999999998765    46899998                3333321   11112222221111223


Q ss_pred             EEEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEEeccccCCCCCccccCCCeeeecCCCeEEEEEEE-eeCCCCeEEEE
Q psy7036          69 VALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRI-QADPAPTVIWS  147 (254)
Q Consensus        69 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~~~~~~~~W~  147 (254)
                      .+|.|.+++..|+|.|+|.+.+..+.....+.|.|..      +|.+........+..|+.+.|.|.+ .+.|.+.+.|+
T Consensus        84 ~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~V~~------~p~~~~~~~~~~~~~g~~v~l~C~~~~g~p~~~v~W~  157 (214)
T 3jz7_A           84 ASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLV------KPSGTRCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQ  157 (214)
T ss_dssp             CCEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC------CCBSCEEEEESCCBTTCCEEEEEECSBCCSSCEEEEE
T ss_pred             ccEEEccCChhhCeEEEEEEEeCCCccccEEEEEEEc------CCCCceeeeecceecCCcEEEEecCCCCCCCCEEEEE
Confidence            3799999999999999999999888878888888873      3333222223346789999999999 78999999999


Q ss_pred             ECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcceEEEEEEEe
Q psy7036         148 HSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFD  207 (254)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~v~  207 (254)
                      +++........... ...++     .|.|.+++.+|.|.|+|.|.|..|....++.|.|.
T Consensus       158 ~~~~~~~~~~~~~~-~~~~~-----~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~  211 (214)
T 3jz7_A          158 KLSDSQTMPTPWLA-EMTSP-----VISVKNASSEYSGTYSCTVQNRVGSDQCMLRLDVV  211 (214)
T ss_dssp             ECSTTCCCCGGGGG-GTTSS-----EEEECSCCGGGCEEEEEEEECSSCEEEEEEEECCB
T ss_pred             ECCCCCccCcccee-ccCCC-----EEEEecCCHHHCEEEEEEEEcCCCcEEEEEEEEEe
Confidence            95432221111111 11122     79999999999999999999999998888887775

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.95  E-value=7.3e-27  Score=178.30  Aligned_cols=186  Identities=18%  Similarity=0.254  Sum_probs=143.2

Q ss_pred             CCCCCeeEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCe-E
Q psy7036           5 EDFAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAG-L   83 (254)
Q Consensus         5 ~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G-~   83 (254)
                      ...+|.|...+....+.+|++++|.|.+.+.|.+.+.|++++..+......       ........|.|.+++..|+| .
T Consensus       155 ~c~~P~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~i~W~~~~~~~~~~~~~-------~~~~~~~~L~i~~v~~~D~G~~  227 (347)
T 2ifg_A          155 SCGVPTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMK-------SGGLPSLGLTLANVTSDLNRKN  227 (347)
T ss_dssp             TCCCCEEEEECCSSCCBTTCCEEEEEEEECSSCCCCCEEESCCCSSEEECC-------CCCSSEEEEEEESCCSTTTTCC
T ss_pred             cCCCCceeccCCceEEeCCCcEEEEEEEecCCCCEEEEEcCCceeeccccc-------ceecccceEEEeeCChHHCCCe
Confidence            446899999998889999999999999999999999999988654321111       11223348999999999999 9


Q ss_pred             EEEEEEcCCCceEEEEEEEEeccccCCCCCccccCCCeeeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEE
Q psy7036          84 YKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSI  163 (254)
Q Consensus        84 Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~  163 (254)
                      |+|.+.|..|.....+.|.|.      .+|.+    .......|+.+.|.|.+.|.|.|.+.|++++..+..........
T Consensus       228 Y~C~a~n~~g~~~~~~~l~V~------~~P~i----~~~~~~~g~~v~l~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~  297 (347)
T 2ifg_A          228 VTCWAENDVGRAEVSVQVNVS------FPASV----QLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEF  297 (347)
T ss_dssp             EEECCEETTEECCEEECCCCB------EEEEE----EECCCEESSSEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEE
T ss_pred             EEEEEEcCCCCEEEEEEEEEc------CCCee----eeccCccCceEEEEEEeeecCCCcEEEEeCCEECCCCcceeeEE
Confidence            999999998887777777765      23332    11223468999999999999999999999999887544433322


Q ss_pred             cC---CCCceeeEEEEccCCCCCceeEEEEEEcCCCcceEEEEEEEe
Q psy7036         164 DK---DGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFD  207 (254)
Q Consensus       164 ~~---~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~v~  207 (254)
                      ..   +.......|.|.+++.+|+|.|+|.|.|..|....++.+.|.
T Consensus       298 ~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~  344 (347)
T 2ifg_A          298 LEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFM  344 (347)
T ss_dssp             CCCCTTCCCEEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEECSC
T ss_pred             EeecCCCcccceEEEECCCCcccCceEEEEEecCCCceeeEEEEEec
Confidence            22   122334579999999999999999999999988888877765

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4

Probab=99.95  E-value=1.3e-25  Score=177.27  Aligned_cols=215  Identities=14%  Similarity=0.218  Sum_probs=146.1

Q ss_pred             CCCeeE-eCCCceeecCCCeEEEEEEEeeCCCC---ceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCe
Q psy7036           7 FAPSFT-QKPQLRQEDEGNRLIFECQLLCNPKP---DIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAG   82 (254)
Q Consensus         7 ~~p~~~-~~~~~~~v~~g~~v~l~C~~~~~~~~---~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G   82 (254)
                      .+|.+. ..+....+.+|++++|.|.+.+.+.+   .++|+|++..+......        .......|.|.+++.+|+|
T Consensus        84 ~~P~~~~~~~~~~~v~~G~~v~L~C~~~g~~~~~~~~v~W~k~g~~l~~~~~~--------~~~~~~~L~i~~~~~~d~G  155 (450)
T 1z7z_I           84 WTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAV--------GEPAEVTTTVLVRRDHHGA  155 (450)
T ss_dssp             BCCSEEEECCCCSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEECC--------TTTEEEEEEEECCSSCSSC
T ss_pred             eCCCcceecCCCceEeeCCeEEEEEEecCCCCCcCcEEEEeeCCEEeeccccc--------ccccceEEEEEeeccccCc
Confidence            355544 56677789999999999999988777   89999999988654311        1122348999999999999


Q ss_pred             EEEEEEEcCCCceE--------EEEEEEEeccccCCCCCccccCCCeeeecCCCeEEEEEEEeeC-C--CCeEEEEECCE
Q psy7036          83 LYKVKAKNKMGEVA--------ASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQAD-P--APTVIWSHSGV  151 (254)
Q Consensus        83 ~Y~C~~~~~~~~~~--------~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~--~~~~~W~~~~~  151 (254)
                      .|+|.+.|..|...        ....+.|...  ...+|.+..   ...+.+|+.+.|.|.+.+. |  .+.+.|++++.
T Consensus       156 ~Y~C~a~n~~g~~~~~~~~~~s~~~~l~v~~~--~~~~p~~~~---~~~v~~G~~v~l~C~~~g~~P~~~~~~~W~~~~~  230 (450)
T 1z7z_I          156 NFSCRTELDLRPQGLELFENTSAPYQLQTFVL--PATPPQLVS---PRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQ  230 (450)
T ss_dssp             EEEEEEEEECGGGTSCEEEEECCCEECEECCC--CSSCCEEEC---CSEEETTSEEEEEEEEESCTTGGGCEEEEEETTE
T ss_pred             eEEEEEEcccCCCCceEEeeccCccceeeecc--CCCCCEecC---ceeEEeCCcEEEEEEeeCCCCCCceEEEEeCCCE
Confidence            99999999876422        2233444321  012222211   1567789999999999988 6  68999999998


Q ss_pred             ecccCCcceEEEcCCCCceeeEEEEccCCCCCce--eEEEEEEcCCCcceEEEEEEEecCCCCCCCCCCCCeeecCCccc
Q psy7036         152 QVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAG--KYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTK  229 (254)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G--~y~C~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~p~~~~~~~~~  229 (254)
                      .+..    .+....+.  ....+.+ +++.+|.|  .|+|.+.|..+.......|.|...+        +|.+...  ..
T Consensus       231 ~~~~----~~~~~~~~--~~~~~~~-~v~~~d~G~~~Y~C~a~n~~g~~~~~~~l~V~~~~--------~p~i~~~--~~  293 (450)
T 1z7z_I          231 RLNP----TVTYGNDS--FSAKASV-SVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFP--------APNVILT--KP  293 (450)
T ss_dssp             ECCC----EEEEETTE--EEEEEEE-ECCGGGCEEEEEEEEEEETTEEEEEEEEEEEECCC--------CCEEEES--CS
T ss_pred             eCCc----eEEecCCc--eeEEEEE-EeEhhhCCcEEEEEEEccCCccEEEEEEEEEecCC--------CCeEecC--Ce
Confidence            8754    12222221  1112223 67899999  9999999999888888888887522        3555433  34


Q ss_pred             cccCCCCcEEEEEEEeccCCCceeC
Q psy7036         230 QSDDDLNDIVIECRLVGEPEPTISW  254 (254)
Q Consensus       230 ~~~~g~~~~~l~C~~~~~p~p~~~W  254 (254)
                      .+.+|+ .+.|.|.+.  |.|.++|
T Consensus       294 ~v~~G~-~v~l~C~~~--p~p~i~W  315 (450)
T 1z7z_I          294 EVSEGT-EVTVKCEAH--PRAKVTL  315 (450)
T ss_dssp             EEETTC-EEEEEEEC----------
T ss_pred             eEeCCC-cEEEEEecC--CCCEeEE
Confidence            678899 999999997  8889998

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}

Probab=99.95  E-value=3.2e-26  Score=171.73  Aligned_cols=182  Identities=26%  Similarity=0.426  Sum_probs=136.5

Q ss_pred             CCeeEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCc-ceEEEeecCCcceEEEEEEeccCCCCCeEEEE
Q psy7036           8 APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTR-TVMKTTPIGTNKYLVALELDDVIETDAGLYKV   86 (254)
Q Consensus         8 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C   86 (254)
                      .|.+...+....+.+|+++.|.|.+.+.|.+.+.|++++..+..... .++.....+      .|.|.+++..|+|.|+|
T Consensus       108 ~p~i~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~------~L~i~~~~~~d~G~Y~C  181 (304)
T 2yd9_A          108 FPNIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSG------ALQIESSEETDQGKYEC  181 (304)
T ss_dssp             CCEEEECCCCEEEETTSCEEECCEEECSSCCEEEEEETTEECCGGGGTTSEEECTTS------CEEECSCCGGGCEEEEE
T ss_pred             CCeeecCCccEEEeCCCeEEEEEECccCCCCeEEEEECCEECcCCCCcceEEeCCCe------EEEEccCCcccCEEEEE
Confidence            37888888888899999999999999999999999999998865422 223222222      69999999999999999


Q ss_pred             EEEcCCCceEEE-EEEEEeccccCCCCCccccCCCeeeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcC
Q psy7036          87 KAKNKMGEVAAS-INLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDK  165 (254)
Q Consensus        87 ~~~~~~~~~~~~-~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~  165 (254)
                      .+.|..|..... ..+.|...   ..+|.+...+....+..|+.+.|.|.+.+.|.+.+.|++++..+.......     
T Consensus       182 ~a~n~~g~~~~~~~~l~v~~~---~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~-----  253 (304)
T 2yd9_A          182 VATNSAGVRYSSPANLYVRVQ---NVAPRFSILPMSHEIMPGGNVNITCVAVGSPMPYVKWMQGAEDLTPEDDMP-----  253 (304)
T ss_dssp             EEEETTEEEECCCEEEEEECC---CEEEEEEECCCCBCCCTTCCEEEEEEEEEESCCEEEEEETTEECSCSSSCC-----
T ss_pred             EEEeCCCCEEeccEEEEEEee---ccCCcEEecCCceEEcCCCeEEEEEEEeeeCCCEEEEEECCEECCCccccc-----
Confidence            999988865432 44444311   134555555555678889999999999999999999999998886543211     


Q ss_pred             CCCceeeEEEEccCCCCCceeEEEEEEcCCCcceEEEEEEEec
Q psy7036         166 DGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFDS  208 (254)
Q Consensus       166 ~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~v~~  208 (254)
                      .+   ...|.|.++  +|+|.|+|.|.|..|....++.|.|..
T Consensus       254 ~~---~~~L~i~~~--~d~G~Y~C~a~N~~G~~~~~~~l~V~~  291 (304)
T 2yd9_A          254 VG---RNVLELTDV--KDSANYTCVAMSSLGVIEAVAQITVKS  291 (304)
T ss_dssp             BS---EEEEEECSC--CSCEEEEEEEEETTEEEEEEEEEC---
T ss_pred             CC---cEEEEEccc--ccCEEEEEEEEeCCCcEEEEEEEEEec
Confidence            11   125666665  689999999999999998888888874

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4

Probab=99.95  E-value=1.7e-26  Score=182.34  Aligned_cols=204  Identities=18%  Similarity=0.237  Sum_probs=148.3

Q ss_pred             eEeCCCceeecCCCeEEEEEEEeeCCCCce-----EEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEE
Q psy7036          11 FTQKPQLRQEDEGNRLIFECQLLCNPKPDI-----VWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYK   85 (254)
Q Consensus        11 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v-----~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~   85 (254)
                      |...|....+.+|++++|.|.+.+ |.+.+     .|+|++..+... +             ...|.|.+++. |+| |+
T Consensus         2 i~~~P~~~~v~~G~~v~L~C~~~g-p~p~~~~~~~~w~k~~~~~~~~-~-------------~~~l~i~~v~~-d~g-Y~   64 (450)
T 1z7z_I            2 TSVSPSKVILPRGGSVLVTCSTSC-DQPMLLGIETPLPKKELLLPGN-N-------------RKVYELSNVQE-DSQ-PM   64 (450)
T ss_dssp             CEEESSEEEEETTEEEEEEEECCS-SCCCEEEECSSSCEEECCSSTT-T-------------EEEEEEEEECS-CBC-CE
T ss_pred             cccCCCceEEecCCcEEEEEEccC-CCcccccccceeeecceEecCC-C-------------ceEEEEEeccc-CCe-eE
Confidence            566788889999999999999998 88888     899876543211 1             11689999987 999 99


Q ss_pred             EEEEcCCCceEEEEEEEEeccccCCCCCccc-cCCCeeeecCCCeEEEEEEEeeCCCC---eEEEEECCEecccCCcceE
Q psy7036          86 VKAKNKMGEVAASINLNFSREQIDGLAPTFL-KKPSIRQEDDGKRLLFECRIQADPAP---TVIWSHSGVQVKEDKRHKF  161 (254)
Q Consensus        86 C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~-~~~~~~~~~~g~~~~l~C~~~~~~~~---~~~W~~~~~~~~~~~~~~~  161 (254)
                      |.+.+..+.....+.|.|..      +|... ..+....+.+|+.+.|.|.+.+.+++   .+.|+|++..+......  
T Consensus        65 C~a~~~~~~~~~~~~l~V~~------~P~~~~~~~~~~~v~~G~~v~L~C~~~g~~~~~~~~v~W~k~g~~l~~~~~~--  136 (450)
T 1z7z_I           65 CYSNCPDGQSTAKTFLTVYW------TPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAV--  136 (450)
T ss_dssp             EEEEETTEEEEEECEEEEEB------CCSEEEECCCCSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEECC--
T ss_pred             EEEeCCCCcceeEEEEEEEe------CCCcceecCCCceEeeCCeEEEEEEecCCCCCcCcEEEEeeCCEEeeccccc--
Confidence            99987666666677787763      33333 44455678899999999999998887   89999999887533210  


Q ss_pred             EEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcce--------EEEEEEEecCCCCCCCCCCCCeeecCCccccccC
Q psy7036         162 SIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESN--------ATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDD  233 (254)
Q Consensus       162 ~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~--------~~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~  233 (254)
                           .......|.|.+++.+|.|.|+|.|.|..|...        ....+.+...      ...+|.+...   ..+.+
T Consensus       137 -----~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~~~s~~~~l~v~~~------~~~~p~~~~~---~~v~~  202 (450)
T 1z7z_I          137 -----GEPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVL------PATPPQLVSP---RVLEV  202 (450)
T ss_dssp             -----TTTEEEEEEEECCSSCSSCEEEEEEEEECGGGTSCEEEEECCCEECEECCC------CSSCCEEECC---SEEET
T ss_pred             -----ccccceEEEEEeeccccCceEEEEEEcccCCCCceEEeeccCccceeeecc------CCCCCEecCc---eeEEe
Confidence                 011123799999999999999999999877543        2233333321      0123444322   56778


Q ss_pred             CCCcEEEEEEEecc-C--CCceeC
Q psy7036         234 DLNDIVIECRLVGE-P--EPTISW  254 (254)
Q Consensus       234 g~~~~~l~C~~~~~-p--~p~~~W  254 (254)
                      |+ .+.|.|.+.|. |  .+.++|
T Consensus       203 G~-~v~l~C~~~g~~P~~~~~~~W  225 (450)
T 1z7z_I          203 DT-QGTVVCSLDGLFPVSEAQVHL  225 (450)
T ss_dssp             TS-EEEEEEEEESCTTGGGCEEEE
T ss_pred             CC-cEEEEEEeeCCCCCCceEEEE
Confidence            99 99999999998 7  577887

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A

Probab=99.95  E-value=5.5e-26  Score=163.29  Aligned_cols=183  Identities=15%  Similarity=0.153  Sum_probs=121.3

Q ss_pred             CCceeecCCCeEEEEEEEeeCCCC---ceEEEeCCEE-----------eee----CCcceEEEeecCCcceEEEEEEecc
Q psy7036          15 PQLRQEDEGNRLIFECQLLCNPKP---DIVWFRGETQ-----------LSE----DTRTVMKTTPIGTNKYLVALELDDV   76 (254)
Q Consensus        15 ~~~~~v~~g~~v~l~C~~~~~~~~---~v~W~~~~~~-----------~~~----~~~~~~~~~~~~~~~~~~~l~i~~~   76 (254)
                      ++++.+.+|++|+|.|.+.+.+.+   .|+|+|++..           +..    ....+............++|.|.++
T Consensus        11 ~~pV~v~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v   90 (226)
T 4f80_A           11 SGPILAMVGEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQSAPYRGRTSILRDGITAGKAALRIHNV   90 (226)
T ss_dssp             SSCEEEETTSCEEEEEEEESCCCCTTSEEEEEETTTCCEEEEEETTEECGGGSCTTTTTTEEEECTTGGGTEEEEEESSC
T ss_pred             CCCEEEEcCCcEEEEEEEECCCCCCceEEEEEECCCCceEEEEeCCeEcccccCccccceEEEecccccCCeEEEEEeeC
Confidence            345788999999999999765543   6999987632           111    1112222223333344568999999


Q ss_pred             CCCCCeEEEEEEEcCCCceEEEEEEEEeccccCCCCCccccCCCeeeecCCCeEEEEEEEee-CCCCeEEEEECCEeccc
Q psy7036          77 IETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQA-DPAPTVIWSHSGVQVKE  155 (254)
Q Consensus        77 ~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~~~~~~~W~~~~~~~~~  155 (254)
                      +..|+|.|+|.+.|..+.....+.+.+..        ..........+..|..+.+.|.+.+ .|.|.+.|++++..+..
T Consensus        91 ~~~D~G~Y~C~a~n~~~~~~~~v~~~~~~--------~~~~~~~~~~~~~g~~v~l~c~~~g~~P~p~i~W~k~~~~~~~  162 (226)
T 4f80_A           91 TASDSGKYLCYFQDGDFYEKALVELKVAA--------LGSDLHVDVKGYKDGGIHLECRSTGWYPQPQIQWSNNKGENIP  162 (226)
T ss_dssp             CGGGCEEEEEEEEETTEEEEEEEEEEEEB--------CCCCCEEEEEEEETTEEEEEEEEEEEBSCCEEEEECTTSCBCC
T ss_pred             chHHCeeEEEEEECCCcEEEEEEEEeecc--------ceecccceeeeccCCceeeEEEeccCCCCCEEEEEECCceEcC
Confidence            99999999999999887766666555532        1112223455678999999999887 58999999997654433


Q ss_pred             CCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcceEEEEEEEe
Q psy7036         156 DKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFD  207 (254)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~v~  207 (254)
                      ..........++.  ...+.+..++.+|.|.|+|.|.|..|...++..|.|.
T Consensus       163 ~~~~~~~~~~~g~--~~v~s~l~v~~~d~G~YtC~a~N~~g~~~~~~~v~v~  212 (226)
T 4f80_A          163 TVEAPVVADGVGL--YAVAASVIMRGSSGEGVSCTIRSSLLGLEKTASISIA  212 (226)
T ss_dssp             CEECCCEECTTSC--EEEEEEEEECC----CEEEEEEETTTTEEEEEEECCC
T ss_pred             CCceEEEECCCCc--EEEEEEEEechhcCcEEEEEEEeCCCCeEEEEEEEEC
Confidence            3333333333332  1234455677899999999999999999888887775

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C*

Probab=99.95  E-value=4.3e-26  Score=157.39  Aligned_cols=165  Identities=17%  Similarity=0.260  Sum_probs=125.9

Q ss_pred             CCCeeEeCCCceeecCCCeEEEEEEEeeCCCCc-eEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEE
Q psy7036           7 FAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPD-IVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYK   85 (254)
Q Consensus         7 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~-v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~   85 (254)
                      .+|.+...|....+.+|++++|.|.+.+.+.+. +.|+|++..+.....               .|.|.+++.+|+|.|+
T Consensus         6 ~~p~i~~~p~~~~v~~G~~v~L~C~~~~~p~~~~~~W~~~~~~~~~~~~---------------~L~i~~~~~~d~G~Y~   70 (175)
T 1fnl_A            6 PKAVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQAS---------------SYFIDAATVNDSGEYR   70 (175)
T ss_dssp             CCCEEEEESCCSEEETTCCEEEEEECCCBTTBCCCEEEETTEEEESSCS---------------EEEESSCCGGGCEEEE
T ss_pred             CCCEEEEcCCceeeeCCCcEEEEeeCCCCCCCcceEEEECCEEccCCce---------------EEEEeCCCcccCEEEE
Confidence            478888888888899999999999998877665 899999988764211               7999999999999999


Q ss_pred             EEEEcCCCceEEEEEEEEeccccCCCCCccccCCCeeeecCCCeEEEEEEEeeCCCC-eEEEEECCEecccCCcceEEEc
Q psy7036          86 VKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQADPAP-TVIWSHSGVQVKEDKRHKFSID  164 (254)
Q Consensus        86 C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~-~~~W~~~~~~~~~~~~~~~~~~  164 (254)
                      |.+.|..+.  ..+.|.|..      ++..... ....+.+|+.+.|.|.+.+.+++ .+.|++++..+...      . 
T Consensus        71 C~~~n~~~s--~~~~l~V~~------~~~~~~~-~~~~~~~g~~~~l~C~~~~~~~~~~~~W~k~g~~~~~~------~-  134 (175)
T 1fnl_A           71 CQTNLSTLS--DPVQLEVHI------GWLLLQA-PRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKYF------H-  134 (175)
T ss_dssp             EECSSSCCC--CCEEEEEEC------SSEEEEC-SCSEEETTCCEEEEEEECTTCCCEEEEEEETTEEEEEE------E-
T ss_pred             EEeeCCccc--ccEEEEEeC------CCceeeC-CCceecCCCCEEEEEEcCCCCCceEEEEEECCeEccCC------C-
Confidence            999885543  345666652      2222222 23457789999999999887665 89999999876321      1 


Q ss_pred             CCCCceeeEEEEccCCCCCceeEEEEEEcCCCc-ceEEEEEEEe
Q psy7036         165 KDGHSYFASLEIIDVTIEDAGKYKVTAKNELGE-SNATISLNFD  207 (254)
Q Consensus       165 ~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~-~~~~~~~~v~  207 (254)
                      .+     ..|.|.+++.+|.|.|+|.|.|..+. .+..+.|.|.
T Consensus       135 ~~-----~~L~i~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~  173 (175)
T 1fnl_A          135 HN-----SDFHIPKATLKDSGSYFCRGLVGSKNVSSETVNITIT  173 (175)
T ss_dssp             EC-----CCEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEE
T ss_pred             CC-----CEEEEcccChhhCeEEEEEEEcCCCCccCccEEEEEe
Confidence            11     27999999999999999999997654 3555666664

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.94  E-value=3.3e-25  Score=154.22  Aligned_cols=167  Identities=19%  Similarity=0.352  Sum_probs=123.9

Q ss_pred             eeecCCCeEEEEEEEeeCCCC--ceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcCCCce
Q psy7036          18 RQEDEGNRLIFECQLLCNPKP--DIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGEV   95 (254)
Q Consensus        18 ~~v~~g~~v~l~C~~~~~~~~--~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~   95 (254)
                      ..+.+|++++|.|.+.+.+.+  .+.|+|++..+........          ...|.|.  +..|+|.|+|.+.|..   
T Consensus         8 ~~v~~G~~v~l~C~~~~~~~p~~~~~W~k~~~~l~~~~~~~~----------~~~l~i~--~~~d~G~Y~C~~~n~~---   72 (184)
T 3b5h_A            8 TVEDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALPGQ----------KTEFKVD--SDDQWGEYSCVFLPEP---   72 (184)
T ss_dssp             EEEEETTEEEEEEEEESCSSCCCEEEEESSSEEEECTTCCCS----------EEEEEEC--GGGCCEEEEEEEESTT---
T ss_pred             EEEecCCCEEEEEECCCCCCCceEEEEEeCCEEeecccccCC----------cEEEEEe--chhhCeEEEEEEECCc---
Confidence            467899999999999876666  8999999998876543211          1246665  6899999999999732   


Q ss_pred             EEEEEEEEeccccCCCCCccccCCCeeeecCCCeEEEEEEEeeCC-CCeEEEEE---CCE-ecccCCcceEEEcCCCCce
Q psy7036          96 AASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQADP-APTVIWSH---SGV-QVKEDKRHKFSIDKDGHSY  170 (254)
Q Consensus        96 ~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~-~~~~~W~~---~~~-~~~~~~~~~~~~~~~~~~~  170 (254)
                      .....|.|.      .+|.+...+....+..|+.+.|.|.+.+.| .+.+.|++   ++. .+......++....++.  
T Consensus        73 ~~~~~l~V~------~~P~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~--  144 (184)
T 3b5h_A           73 MGTANIQLH------GPPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQG--  144 (184)
T ss_dssp             SCEEEEEEC------CSCCCEESCSEEEECTTSCEEEEEECCCSSCCCEEEEEECCSSSCEECCTTGGGTEEEEEETT--
T ss_pred             CcEEEEEEe------cCCceeecCCCcEEcCCCcEEEEEEECCCCCCCeEEEEEcCCCCCEEeecCCCCEEEEEecCC--
Confidence            245667775      455555555666788999999999999999 78999999   444 33322222232222221  


Q ss_pred             eeEEEEccCC-CCCceeEEEEEEcCCCcceEEEEEEEe
Q psy7036         171 FASLEIIDVT-IEDAGKYKVTAKNELGESNATISLNFD  207 (254)
Q Consensus       171 ~~~l~i~~~~-~~d~G~y~C~~~~~~~~~~~~~~~~v~  207 (254)
                      .+.|.|.++. .+|.|.|+|.|.|..|.....+.|.|.
T Consensus       145 ~~~L~i~~v~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~  182 (184)
T 3b5h_A          145 RSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRVR  182 (184)
T ss_dssp             EEEEEECSCCTTTSSEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             eeEEEEeeccccccCceEEEEEEeCCCcceEEEEEEEe
Confidence            2479999999 999999999999999998888888775

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}

Probab=99.94  E-value=1e-26  Score=163.42  Aligned_cols=174  Identities=16%  Similarity=0.146  Sum_probs=122.8

Q ss_pred             CCCeeEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEE
Q psy7036           7 FAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKV   86 (254)
Q Consensus         7 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C   86 (254)
                      .+|.|...|.. .+.+|++|+|.|.+.+ +.+.+.|+|++..+.......      ........|.|.+++..|+|.|+|
T Consensus         4 ~~P~i~~~p~~-~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~~------~~~~~~~~L~i~~v~~~D~G~Y~C   75 (196)
T 3p2t_A            4 PKPTLWAEPGS-VISWGNSVTIWCQGTL-EAREYRLDKEESPAPWDRQNP------LEPKNKARFSIPSMTEDYAGRYRC   75 (196)
T ss_dssp             CCCEEEEESCS-EEETTCCEEEEEECCT-TCCEEEEEETTSCSCSEEECC------CSSSSEEEEEESSCCGGGCEEEEE
T ss_pred             CCCEEEccCCC-cCCCCCcEEEEeeCCC-CCCEEEEEECCCCCccccccc------ccCCceEEEEeccCCcccCceEEE
Confidence            36888888877 8899999999999986 678999999987664311110      011123379999999999999999


Q ss_pred             EEEcCCCc--eEEEEEEEEeccccCCCCCccccCCCeeeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEEc
Q psy7036          87 KAKNKMGE--VAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSID  164 (254)
Q Consensus        87 ~~~~~~~~--~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~  164 (254)
                      .+.|..+.  ....+.|.|...   ..+|.+...+. ..+.+|+.++|.|.+.+. .+.+.|+|++..+...........
T Consensus        76 ~a~n~~g~~~~s~~~~l~V~~~---~~~p~~~~~~~-~~v~~G~~v~L~C~~~~~-~~~~~w~k~g~~~~~~~~~~~~~~  150 (196)
T 3p2t_A           76 YYRSPVGWSQPSDPLELVMTGA---YSKPTLSALPS-PLVTSGKSVTLLCQSRSP-MDTFLLCKERAAHPLLCLRSEHGA  150 (196)
T ss_dssp             EEEETTEEBCCCCCEEEEEECS---SCCCEEEEESC-SEECTTCCEEEEEEEEEE-EEEEEEEETTCCCGGGSEEEEEEE
T ss_pred             EEeCCCcccCCCccEEEEecCC---CCCCEEEeCCc-ceecCCCeEEEEEecCCC-CCEEEEEeCCCcccceeecccccc
Confidence            99998872  344566666531   12333333332 256789999999998874 458999999876643321111000


Q ss_pred             CCCCceeeEEEEccCCCCCceeEEEEEEcCCC
Q psy7036         165 KDGHSYFASLEIIDVTIEDAGKYKVTAKNELG  196 (254)
Q Consensus       165 ~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~  196 (254)
                         ......|.|.+++.+|+|.|+|.|.|..+
T Consensus       151 ---~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~  179 (196)
T 3p2t_A          151 ---QQHQAEFPMSPVTSVHGGTYRCFSSHGFS  179 (196)
T ss_dssp             ---EEEEEEEEECSCCGGGCEEEEEEEECGGG
T ss_pred             ---cCcceEEEeCCCcccCCCeEEEEEEcCCC
Confidence               01123799999999999999999999876

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}

Probab=99.94  E-value=1.1e-25  Score=175.80  Aligned_cols=178  Identities=17%  Similarity=0.201  Sum_probs=127.1

Q ss_pred             CCCceeecCCCeEEEEEEEee-CCCCceEEEeCCEEeeeCCcceEEEeecC-CcceEEEEEEeccCCCCCeEEEEEEEcC
Q psy7036          14 KPQLRQEDEGNRLIFECQLLC-NPKPDIVWFRGETQLSEDTRTVMKTTPIG-TNKYLVALELDDVIETDAGLYKVKAKNK   91 (254)
Q Consensus        14 ~~~~~~v~~g~~v~l~C~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~i~~~~~~d~G~Y~C~~~~~   91 (254)
                      .+....+.+|+.+.|.|.+.| .|.+.++|+|++..+.....+........ .......|.|.+++..|+|.|+|.|.|.
T Consensus       233 ~~~~~~v~~G~~v~L~C~~~g~~p~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~  312 (423)
T 3qs7_E          233 TLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKH  312 (423)
T ss_dssp             STTEEEEETTSCEEEEEEEEESSSCCCEEEEESSSBCCGGGEEEEEEEETTTEEEEEEEEEESSCCTTTCEEEEEEETTE
T ss_pred             CCCceEEeCCCeEEEEEEEEcCCCCcEEEEEECCEEccccceeecccccCCceeEEEEEEEEeecCHHHCEEEEEEEecC
Confidence            445667899999999999998 67799999999987754322211111111 1122337999999999999999999987


Q ss_pred             CCceEEEEEEEEeccccCCCCCccccCC--CeeeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCCCCc
Q psy7036          92 MGEVAASINLNFSREQIDGLAPTFLKKP--SIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHS  169 (254)
Q Consensus        92 ~~~~~~~~~l~v~~~~~~~~~~~~~~~~--~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~  169 (254)
                         ....+.|.|..      +|.+...+  ....+.+|+.+.|.|.+.+.|.|.+.|+|++..+......    ..+.. 
T Consensus       313 ---~~~~~~L~V~~------~p~i~~~~~~~~~~v~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~----~~~~~-  378 (423)
T 3qs7_E          313 ---PSQSALVTIVE------KGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKG----LDNGY-  378 (423)
T ss_dssp             ---EEEEEEEEEES------SCEEEEC---CEECCCTTCCCCEEEEEEEESCCEEEEEETTEEEECBCCB----CSSSS-
T ss_pred             ---CCceEEEEEEe------CCcceEcCCCccEEecCCCeEEEEEEEEEcCCCeEEEEECCEECCCcccc----ccCCc-
Confidence               56677788863      33332222  3456778999999999999999999999999988644310    00111 


Q ss_pred             eeeEEEEccCCCCCceeEEEEEEcCCCcceEEEEEEEec
Q psy7036         170 YFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFDS  208 (254)
Q Consensus       170 ~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~v~~  208 (254)
                         .+.+.....+|+|.|+|.|.|..|....++.|.|..
T Consensus       379 ---~~~~~~~~~~D~G~YtC~A~N~~G~~~~s~~L~v~~  414 (423)
T 3qs7_E          379 ---SISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRS  414 (423)
T ss_dssp             ---EEEEECCCTTCCSCEEEEEEETTEEEEEEEEEC---
T ss_pred             ---EEEEEecccccCEEEEEEEEcCCceEEEEEEEEEec
Confidence               222345567899999999999999999998888875

>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=99.94  E-value=6.1e-26  Score=178.83  Aligned_cols=237  Identities=12%  Similarity=0.169  Sum_probs=148.3

Q ss_pred             CCeeEeCCCceeecCCCeEEEEEEEeeC-CCC-ceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEE
Q psy7036           8 APSFTQKPQLRQEDEGNRLIFECQLLCN-PKP-DIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYK   85 (254)
Q Consensus         8 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~-~~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~   85 (254)
                      +|.+...+....+.+|+.++|.|.+.|. |.+ .++|++++..+.........  ..+.....+.|.|.++...| |.|+
T Consensus       123 ~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~~~~~~~~~~~~~--~~~~~~~~s~L~i~~~~~~d-g~Y~  199 (444)
T 1igt_B          123 APSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVL--QSDLYTLSSSVTVTSSTWPS-QSIT  199 (444)
T ss_dssp             CCEEEEECCCSSCCCSSCEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEE--ETTEEEEEEEEEECSTTTTT-SCCE
T ss_pred             CCceeEecccccCCCCCcEEEEEEEcceeCCCcEEEEecCCCCCCeEecCccc--cCCcEEEEEEEEEchhhcCC-CeEE
Confidence            4544432323345799999999999884 766 99999988753111000011  01112223479999999999 9999


Q ss_pred             EEEEcCCCceEEEEEEEEecc------------ccCCCCCcc-ccCCCeee-ecCCCeEEEEEEEeeCC----CCeEEEE
Q psy7036          86 VKAKNKMGEVAASINLNFSRE------------QIDGLAPTF-LKKPSIRQ-EDDGKRLLFECRIQADP----APTVIWS  147 (254)
Q Consensus        86 C~~~~~~~~~~~~~~l~v~~~------------~~~~~~~~~-~~~~~~~~-~~~g~~~~l~C~~~~~~----~~~~~W~  147 (254)
                      |.+.|..+.......+.+.+.            .....+|.+ ...+.... +..|+.+.|.|.+.+.+    .+.+.|+
T Consensus       200 C~a~n~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~v~~~~p~~~~~~~~G~~~~L~C~~~g~~~~p~~~~v~W~  279 (444)
T 1igt_B          200 CNVAHPASSTKVDKKIEPRGPTIKPCPPCKCPAPNLLGGPSVFIFPPKIKDVLMISLSPIVTCVVVDVSEDDPDVQISWF  279 (444)
T ss_dssp             EEEEETTTTEEEEEECCCCCCSCCCCCCCSCCCSCCCCCCEEEEECCCHHHHHCTTSCCEEEEEEEEECTTCCCCEEEEE
T ss_pred             EEEEeCCCCcceEEEeccCCCCcccCCccccCCcccCCCceEEecCCchhheeecCCCcEEEEEEeecccCCCCeEEEEE
Confidence            999999887544444432100            000113332 22222222 47899999999999874    3589999


Q ss_pred             ECCEecccCCcceEEEcCCC-CceeeEEEEccCCCCCceeEEEEEEcCCCcceEEEEEEEecCCCCCCCCCCCCeeecCC
Q psy7036         148 HSGVQVKEDKRHKFSIDKDG-HSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERP  226 (254)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~p~~~~~~  226 (254)
                      +++..+............++ ....+.|.|.+++.+|.|.|+|.|.|..+.......+.+...      ...+|.+...+
T Consensus       280 k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~~~~~v~~~~~------~~~~P~v~~~~  353 (444)
T 1igt_B          280 VNNVEVHTAQTQTHREDYNSTLRVVSALPIQHQDWMSGKEFKCKVNNKDLPAPIERTISKPKG------SVRAPQVYVLP  353 (444)
T ss_dssp             ETTEECSSTTCBCCEEECSSSEEEEEEEECCHHHHHTTCEEEEEEECTTCSSCEEEEEECCCC------CCBCCEEEEEC
T ss_pred             ECCccccCcccccceeCCCCcEEEEEEEEEcHHHhccCCcEEEEEEcCCCCCceEEEEeccCC------CCCCCEEEEeC
Confidence            99988754332222222222 234468999999999999999999999887644444432100      12356665444


Q ss_pred             ccccccCCCCcEEEEEEEecc-CCC-ceeC
Q psy7036         227 VTKQSDDDLNDIVIECRLVGE-PEP-TISW  254 (254)
Q Consensus       227 ~~~~~~~g~~~~~l~C~~~~~-p~p-~~~W  254 (254)
                      .......++ .+.|.|.+.|. |.+ .++|
T Consensus       354 ~~~~~~~~~-~~~L~C~~~g~~P~~~~v~W  382 (444)
T 1igt_B          354 PPEEEMTKK-QVTLTCMVTDFMPEDIYVEW  382 (444)
T ss_dssp             CCGGGTTSS-EEEEEEEEEEEBSSCCEEEE
T ss_pred             CChHHccCC-eEEEEEEEEeeeCCCCEEEE
Confidence            333345677 79999999994 666 7888

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*

Probab=99.94  E-value=1.2e-25  Score=160.07  Aligned_cols=183  Identities=12%  Similarity=0.148  Sum_probs=123.9

Q ss_pred             eCCCceeecCC--CeEEEEEEEeeCCCCceEEEeC---CEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEE
Q psy7036          13 QKPQLRQEDEG--NRLIFECQLLCNPKPDIVWFRG---ETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVK   87 (254)
Q Consensus        13 ~~~~~~~v~~g--~~v~l~C~~~~~~~~~v~W~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~   87 (254)
                      ..|..+.+.+|  ++++|.|.+.+ |.+.++|+++   +..+....+..  .....      .|.|.+++.+|+|.|+|.
T Consensus        12 ~~p~~v~v~eG~~~~v~L~C~~~~-p~~~v~w~~~~~~g~~~~~~~~~~--~~~~~------~l~I~~v~~~D~G~Y~C~   82 (213)
T 2x1w_L           12 DQHGVVYITENKNKTVVIPCLGSI-SNLNVSLCARYPEKRFVPDGNRIS--WDSKK------GFTIPSYMISYAGMVFCE   82 (213)
T ss_dssp             --CEEEEECCSTTCEEEECCCBSS-TTCCEEEEEETTTEEECCCSSSCE--EETTT------EEEEEGGGTTTCSEEEEE
T ss_pred             CCceEEEEecCCCccEEEeeccCC-CCcEEEEEhhcCCCccccCCCccc--ccCCc------cEEEccCChhcCceEEEE
Confidence            45678889999  99999999975 7789999884   55555443222  12111      699999999999999999


Q ss_pred             EEcCCCceEE-EEEEEEeccccCCCCCccc-cCCCeeeecCCCeEEEEEEEeeCC--CCeEEEEECCEecccCCc-ceEE
Q psy7036          88 AKNKMGEVAA-SINLNFSREQIDGLAPTFL-KKPSIRQEDDGKRLLFECRIQADP--APTVIWSHSGVQVKEDKR-HKFS  162 (254)
Q Consensus        88 ~~~~~~~~~~-~~~l~v~~~~~~~~~~~~~-~~~~~~~~~~g~~~~l~C~~~~~~--~~~~~W~~~~~~~~~~~~-~~~~  162 (254)
                      +.|..+.... .+.|.|..    ..+|.+. .......+.+|+.++|.|.+.+.|  .+.+.|++++..+..... ....
T Consensus        83 a~n~~~~~~s~~~~l~v~~----~~~p~~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~i~W~~~g~~~~~~~~~~~~~  158 (213)
T 2x1w_L           83 AKINDESYQSIMYIVVVVG----YRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDL  158 (213)
T ss_dssp             EC----CEECCCEEEEECB----CCEEEEEEESCSCEEEETTCCEEEEEEEEECTTBCCEEEEECSCSSCCSEEEEEEEE
T ss_pred             EEECCeeEEEEEEEEEEeC----CcccceEEcCCCCeEEcCCCCEEEEEEEECCCCCceEEEEEecCCccceEEEecccc
Confidence            9885443322 25666632    1122222 233344788999999999999865  357999998876432211 0000


Q ss_pred             EcCCC---CceeeEEEEccCCCCCceeEEEEEEcCCCcceEEEEEEEec
Q psy7036         163 IDKDG---HSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFDS  208 (254)
Q Consensus       163 ~~~~~---~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~v~~  208 (254)
                      ....+   ....+.|.|.+++.+|+|.|+|.|.|..|....++.|.|..
T Consensus       159 ~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~  207 (213)
T 2x1w_L          159 KTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHE  207 (213)
T ss_dssp             CCCSSCSCEEEEEEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEEC
T ss_pred             ccccCccceeeeEEEEECCCCcccCEEEEEEEecCCCcEEEEEEEEEec
Confidence            00010   22345899999999999999999999999988888888874

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A*

Probab=99.94  E-value=3.9e-26  Score=157.75  Aligned_cols=166  Identities=18%  Similarity=0.243  Sum_probs=123.7

Q ss_pred             CCCeeEeCCCceeecCCCeEEEEEEEeeCCCC-ceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEE
Q psy7036           7 FAPSFTQKPQLRQEDEGNRLIFECQLLCNPKP-DIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYK   85 (254)
Q Consensus         7 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~   85 (254)
                      .+|.|...|....+.+|++++|.|.+.+.+.+ .+.|++++..+.....               .|.|.+++..|+|.|+
T Consensus         3 ~~P~i~~~p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~~~~---------------~L~i~~v~~~d~G~Y~   67 (176)
T 1f2q_A            3 QKPKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEETNS---------------SLNIVNAKFEDSGEYK   67 (176)
T ss_dssp             -CCCCEEESSCSEEETTCCEEEECCTTCC----CCEEEETTEECSCCSS---------------EEEECSCCGGGCEEEE
T ss_pred             CCCEEEcCCCCcceecCCcEEEEEeCCCCCCcceEEEEECCeECCCCce---------------EEEEeccceecCEEEE
Confidence            46888888888889999999999999877764 6999999988764211               7999999999999999


Q ss_pred             EEEEcCCCceEEEEEEEEeccccCCCCCccccCCCeeeecCCCeEEEEEEEe-eCCCCeEEEEECCEecccCCcceEEEc
Q psy7036          86 VKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQ-ADPAPTVIWSHSGVQVKEDKRHKFSID  164 (254)
Q Consensus        86 C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~-~~~~~~~~W~~~~~~~~~~~~~~~~~~  164 (254)
                      |.+.+..+..  .+.|.|..      ++.... .....+.+|+.+.|.|.+. +.|.+.+.|++++..+.....      
T Consensus        68 C~~~~~~~s~--~~~l~V~~------~~~~~~-~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~------  132 (176)
T 1f2q_A           68 CQHQQVNESE--PVYLEVFS------DWLLLQ-ASAEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYWYE------  132 (176)
T ss_dssp             EECTTSSCCC--CEEEEEEC------SSEEEE-ESCSEEETTSCEEEEEEEGGGCCEEEEEEEETTEECCSCCC------
T ss_pred             EEcCCccccc--cEEEEEeC------cceeec-CCcceeeCCCCEEEEEEecCCCCceEEEEEECCEEEeeecC------
Confidence            9998866543  45555541      222221 2234567899999999994 566779999999988742211      


Q ss_pred             CCCCceeeEEEEccCCCCCceeEEEEEEcCCCc-ceEEEEEEEec
Q psy7036         165 KDGHSYFASLEIIDVTIEDAGKYKVTAKNELGE-SNATISLNFDS  208 (254)
Q Consensus       165 ~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~-~~~~~~~~v~~  208 (254)
                       +     ..|.|.+++.+|+|.|+|.|.|..+. .+..+.|.|..
T Consensus       133 -~-----~~L~i~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~  171 (176)
T 1f2q_A          133 -N-----HNISITNATVEDSGTYYCTGKVWQLDYESEPLNITVIK  171 (176)
T ss_dssp             -S-----SEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC
T ss_pred             -C-----CeEEECCCCcccCEEEEEEEEeCCcceEecCEEEEEec
Confidence             1     27999999999999999999997443 34556777764

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}

Probab=99.94  E-value=9.1e-26  Score=168.05  Aligned_cols=208  Identities=14%  Similarity=0.172  Sum_probs=136.1

Q ss_pred             CeeEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEE
Q psy7036           9 PSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKA   88 (254)
Q Consensus         9 p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~   88 (254)
                      |.|........+.+|++++|.|.+.+.    ++|++++..+..    ....  .........|.|.+++..|+|.|+|.+
T Consensus         1 P~i~~~~~~~~v~~G~~v~L~C~~~~~----v~W~~~~~~~~~----~~~~--~~~~~~~~~L~i~~~~~~D~G~Y~C~a   70 (289)
T 3mjg_X            1 LVVTPPGPELVLNVSSTFVLTCSGSAP----VVWERMSQEPPQ----EMAK--AQDGTFSSVLTLTNLTGLDTGEYFCTH   70 (289)
T ss_dssp             CCBCSSCSEEECCTTCCEEEEEEESSC----CEEEBTTBCCSE----EEEE--CTTSCEEEEEEECSCCGGGCEEEEEEC
T ss_pred             CeecCCCCeEEEeCCCcEEEEEeccce----EEEECCCCCccc----ceec--cCCCceeEEEEEccCChhhCEEEEEEE
Confidence            455555666788999999999999764    999999987631    1111  112223458999999999999999999


Q ss_pred             EcCCCc---eEEEEEEEEeccccCCCCCccccCCCe---eeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEE
Q psy7036          89 KNKMGE---VAASINLNFSREQIDGLAPTFLKKPSI---RQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFS  162 (254)
Q Consensus        89 ~~~~~~---~~~~~~l~v~~~~~~~~~~~~~~~~~~---~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~  162 (254)
                      .|..|.   ....+.|.|...    ..+ +......   ..+.+|+.+.|.|.+. .|.+.+.|++++.......  .  
T Consensus        71 ~n~~g~~~~~~~~~~v~v~~p----~~~-~~~~~~~~~~~~v~~G~~v~l~C~~~-~p~~~v~w~~~~~~~~~~~--~--  140 (289)
T 3mjg_X           71 NDSRGLETDERKRLYIFVPDP----TVG-FLPNDAEELFIFLTEITEITIPCRVT-DPQLVVTLHEKKGDVALPV--P--  140 (289)
T ss_dssp             CC------CCCEEEEEECCCT----TCC-BCCCCHHHHEEEESSCCCEEECCCBS-CTTSCEEEEESSCCSCCCC--C--
T ss_pred             cccCCCCcCcEEeEEEEEECC----CcC-cccCCCCcceEEeecCCeEEEEeEcC-CCCceEEEEeCCCCCccce--e--
Confidence            988765   334455554321    111 1111111   5678899999999997 7778899998652221110  0  


Q ss_pred             EcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcc-eEEEEEEEecCCCCCCCCCCCCeeecCCccccccCCCCcEEEE
Q psy7036         163 IDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGES-NATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIE  241 (254)
Q Consensus       163 ~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~l~  241 (254)
                      .....     .+.    ...|.|.|+|.|.|..+.. ...+.+.+...        .+|.+...+....+.+|+ .+.|.
T Consensus       141 ~~~~~-----~~~----~~~d~G~Y~C~a~n~~~~~~s~~~~l~v~~~--------~~p~i~~~~~~~~v~~G~-~v~L~  202 (289)
T 3mjg_X          141 YDHQR-----GFS----GIFEDRSYICKTTIGDREVDSDAYYVYRLQV--------SSINVSVNAVQTVVRQGE-NITLM  202 (289)
T ss_dssp             EETTT-----EEE----ECCCSSEEEEEEEETTEEEECCCEEEEECCC--------CCCCCEEEESCSEEETTS-CEEEE
T ss_pred             ecCCc-----Cee----eeccCcEEEEEEEeCCceeeeeeEEEEecCC--------CCCCcEEeCCcceeEcCC-CEEEE
Confidence            11111     111    2569999999999876644 33345555532        244455555556788899 99999


Q ss_pred             EEEeccCCCceeC
Q psy7036         242 CRLVGEPEPTISW  254 (254)
Q Consensus       242 C~~~~~p~p~~~W  254 (254)
                      |.+.|.|.|.++|
T Consensus       203 C~~~g~p~p~v~W  215 (289)
T 3mjg_X          203 CIVIGNEVVNFEW  215 (289)
T ss_dssp             EEEESCSSBEEEE
T ss_pred             EEECCCCCcceEE
Confidence            9999999999998

>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*

Probab=99.94  E-value=1.3e-25  Score=177.51  Aligned_cols=235  Identities=14%  Similarity=0.180  Sum_probs=146.4

Q ss_pred             CCCceeecCCCeEEEEEEEeeCC--CCceEEEeC--CE---Ee-ee-----------CCcceEEEeecCCcceEEEEEEe
Q psy7036          14 KPQLRQEDEGNRLIFECQLLCNP--KPDIVWFRG--ET---QL-SE-----------DTRTVMKTTPIGTNKYLVALELD   74 (254)
Q Consensus        14 ~~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~--~~---~~-~~-----------~~~~~~~~~~~~~~~~~~~l~i~   74 (254)
                      .+..+.+.+|++++|.|.+.+.+  .+.+.|||+  +.   .+ ..           ....++....+. ....+.|.|.
T Consensus         6 ~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~-~~~~~~L~I~   84 (457)
T 1hzh_H            6 QSGAEVKKPGASVKVSCQASGYRFSNFVIHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADT-SANTAYMELR   84 (457)
T ss_dssp             ECCCEEECTTCCEEECEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEET-TTTEEEEEEC
T ss_pred             cCCceEEcCCCCEEEEEEecCccccCcEEEEEEeCCCCCcEEEEEEecCCCceecCccccCceEEEEeC-CCCEEEEEEC
Confidence            45567899999999999998765  678999984  21   11 00           011122222111 1234589999


Q ss_pred             ccCCCCCeEEEEEEEcCCC------------ceEEEEEEEEeccccCCCCCccccCCCeeeecCCCeEEEEEEEeeC-CC
Q psy7036          75 DVIETDAGLYKVKAKNKMG------------EVAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQAD-PA  141 (254)
Q Consensus        75 ~~~~~d~G~Y~C~~~~~~~------------~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~  141 (254)
                      +++.+|+|.|+|.+.+..+            .......|.|...  ...+|.+........+..|+.+.|.|.+.+. |.
T Consensus        85 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~--~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~  162 (457)
T 1hzh_H           85 SLRSADTAVYYCARVGPYSWDDSPQDNYYMDVWGKGTTVIVSSA--STKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPE  162 (457)
T ss_dssp             SCCGGGCEEEEEEECCCCCSSCCTTTTCSCCBCCCCEEEEECSC--CCBCCEEEEECCCSCCCTTCCEEEEEEEESBBSC
T ss_pred             CCCcccCEEEEEEEecCCccccccccccccceECCcEEEEecCC--CCCCCeEEecCccccccCCCcEEEEEEEeEEeCC
Confidence            9999999999999998764            1223456666531  1123433322222345689999999999886 54


Q ss_pred             -CeEEEEECCEecccCCcceEEEcCCC-CceeeEEEEccCCCCCceeEEEEEEcCCCcceEEEEEEEecCC-------CC
Q psy7036         142 -PTVIWSHSGVQVKEDKRHKFSIDKDG-HSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFDSDD-------AP  212 (254)
Q Consensus       142 -~~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~v~~~~-------~~  212 (254)
                       +.+.|++++..+........ ...++ +...+.|.|.++..+| |.|+|.|.|..+.......+.+....       .+
T Consensus       163 ~~~v~W~k~~~~~~~~~~~~~-~~~~~~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~~~~~~~~~v~~~~~~~~~~~~~~~  240 (457)
T 1hzh_H          163 PVTVSWNSGALTSGVHTFPAV-LQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKAEPKSCDKTHTCPPCP  240 (457)
T ss_dssp             CCEEEETTTTBCTTEEEEEEE-ECTTSCEEEEEEEEECSGGGGT-SCCEEEEEEGGGTEEEEEECCCCCSCSSCSCCSCC
T ss_pred             CeEEEEEeCCEeccceEcCce-ECCCCCEEEEEEEEecccccCC-ceEEEEEEeCCCCcceeEEecccCCCcccccCCCC
Confidence             78999999865432111111 12222 2334579999999999 99999999987765555444433210       00


Q ss_pred             CCCCCCCCee-ecCCcccc-ccCCCCcEEEEEEEeccCCC----ceeC
Q psy7036         213 VPGEGTKPVF-TERPVTKQ-SDDDLNDIVIECRLVGEPEP----TISW  254 (254)
Q Consensus       213 ~~~~~~~p~~-~~~~~~~~-~~~g~~~~~l~C~~~~~p~p----~~~W  254 (254)
                      .+....+|.+ ...|.... +.+|+ .+.|.|.+.|.|++    .++|
T Consensus       241 ~~~~~~~p~v~~~~p~~~~~~~~G~-~v~L~C~~~g~~p~p~~~~i~W  287 (457)
T 1hzh_H          241 APELLGGPSVFLFPPKPKDTLMISR-TPEVTCVVVDVSHEDPEVKFNW  287 (457)
T ss_dssp             CCCCSSSCEEEEECCCHHHHHCTTS-CCCEEEEEECCCTTCCCCEEEE
T ss_pred             CccccCCceEEeECcCchhhcccCC-ceEEEEEEEcccCCCCceEEEE
Confidence            0001124554 44444333 67788 99999999998553    7888

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E

Probab=99.94  E-value=1.9e-27  Score=182.71  Aligned_cols=196  Identities=9%  Similarity=0.090  Sum_probs=137.9

Q ss_pred             ceeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeC--C----------cceEEEeecCCcceEEEEEEeccCCCCCeEE
Q psy7036          17 LRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSED--T----------RTVMKTTPIGTNKYLVALELDDVIETDAGLY   84 (254)
Q Consensus        17 ~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~--~----------~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y   84 (254)
                      .+.+.+|++++|.|.+.+.|.+.+.|+|++..+...  .          ..++....+........|.|.+++.+|+|.|
T Consensus         3 ~v~~~~G~~v~L~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y   82 (363)
T 1wio_A            3 VVLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTY   82 (363)
T ss_dssp             EEEEETTSCEEECCCCTTCSSCCEEEEETTCCEEEEEETTEEEECSSTTGGGEECCHHHHHTTCCCEEECSCCGGGCEEE
T ss_pred             eEEEeCCCeEEEEEEecCCCceEEEEEeCCccceeccCccEEecCCcccccceeeeeccccCCeEEEEECCCCHHHCEEE
Confidence            457889999999999988899999999998532111  1          1111110000001123699999999999999


Q ss_pred             EEEEEcCCCceEEEEEEEEeccccCCCCCccccCCCeeeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEEc
Q psy7036          85 KVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSID  164 (254)
Q Consensus        85 ~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~  164 (254)
                      +|.+.|..    ..+.|.|....   ..      + ...+.+|+.+.|.|.+.+.|.+.+.|++++..+.        . 
T Consensus        83 ~C~~~n~~----~~~~l~V~~~~---~~------~-~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~--------~-  139 (363)
T 1wio_A           83 ICEVEDQK----EEVQLLVFGLT---AN------S-DTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNI--------Q-  139 (363)
T ss_dssp             EEEETTEE----EEEEEEEEEEE---ES------S-CSSEESBSCEEEEEECCTTCCCCEEEECSSSCEE--------E-
T ss_pred             EEEEEECC----CcEEEEEEeCC---CC------C-ceEEecCCCEEEEEEcCCCCCCeEEEEcCCCccc--------c-
Confidence            99998764    25566665311   11      1 1246789999999999889999999999875431        1 


Q ss_pred             CCCCceeeEEEEccCCCCCceeEEEEEEcCCCcceEEEEEEEecCCCCCCCCCCCCeeecCCccccccCCCCcEEEEEEE
Q psy7036         165 KDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRL  244 (254)
Q Consensus       165 ~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~l~C~~  244 (254)
                      ..     ..|.|.+++.+|+|.|+|.+.|..+.....+.+.|..          +|.   .+....+.+|+ .+.|.|.+
T Consensus       140 ~~-----~~L~i~~v~~~d~G~Y~C~a~~~~~~~~~~~~l~v~~----------~p~---~~~~~~~~~G~-~v~l~C~~  200 (363)
T 1wio_A          140 GG-----KTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLA----------FQK---ASSIVYKKEGE-QVEFSFPL  200 (363)
T ss_dssp             ES-----SEEEECSBCGGGCEECEEEEEETTEEEEECCEECEEC----------CSC---SEEEEEEETBC-CEEEECCC
T ss_pred             cc-----eEEEEeeCChhcCCEEEEEEecCCCeEEEEEEEEEec----------CCC---CCCceEEecCC-EEEEEEEE
Confidence            11     2799999999999999999998766666666666653          111   12444567888 99999988


Q ss_pred             ec-----cCCCceeC
Q psy7036         245 VG-----EPEPTISW  254 (254)
Q Consensus       245 ~~-----~p~p~~~W  254 (254)
                      .+     +|.|.++|
T Consensus       201 ~~~~~~~~P~p~i~W  215 (363)
T 1wio_A          201 AFTVEKLTGSGELWW  215 (363)
T ss_dssp             CCCCCSSCEEEEEEE
T ss_pred             ecccccCCCceeEEE
Confidence            87     78888988

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}

Probab=99.94  E-value=6.9e-27  Score=176.27  Aligned_cols=184  Identities=18%  Similarity=0.295  Sum_probs=137.9

Q ss_pred             ceeecCCCeEEEEEEEee----------CCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEE
Q psy7036          17 LRQEDEGNRLIFECQLLC----------NPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKV   86 (254)
Q Consensus        17 ~~~v~~g~~v~l~C~~~~----------~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C   86 (254)
                      ...+.+|+.+.|.|.+.+          .|.+.+.|++++..+....+......  +   ....|.|.+++..|+|.|+|
T Consensus       107 ~~~~~~g~~~~l~c~~~~~~l~c~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~--~---~~~~L~i~~~~~~d~G~Y~C  181 (317)
T 2y25_A          107 KKIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVT--G---EQIWLQINEPTPNDKGKYVM  181 (317)
T ss_dssp             HHHHTCBCCCEEEECSSEEEEEEEBSSCCSSCEEEEEESSSBCCCCSSEEEEEC--S---SEEEEEEESCCGGGCEEEEE
T ss_pred             ceecccCCCeEEEeeccccEEEEEeccCCCCcEEEEEECCEECCCCCCeEEecc--C---CEEEEEECcCCcccCeeEEE
Confidence            344568888888888876          68899999999998876655444322  1   23379999999999999999


Q ss_pred             EEEcCCCceEEEEEEEEecc--------------ccCCCCCccc-cCCCeeeecCCCeEEEEEEEeeCCCCeEEEEECCE
Q psy7036          87 KAKNKMGEVAASINLNFSRE--------------QIDGLAPTFL-KKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGV  151 (254)
Q Consensus        87 ~~~~~~~~~~~~~~l~v~~~--------------~~~~~~~~~~-~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~  151 (254)
                      .+.|..|.....+.+.|...              .....+|.+. ..+....+..|+.+.|.|.+.+.|.+.+.|++++.
T Consensus       182 ~a~n~~g~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~  261 (317)
T 2y25_A          182 ELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEK  261 (317)
T ss_dssp             EEECSSCEEEEEEEECHHHHHHHHHHHHHHHHHHHHTTTSCEEEEBCCSEEEEETTSBBCEEEEEECSSCCEEEEEESSS
T ss_pred             EEEeCCceEEEEEEEeeeeccccchhhcccCCcccCcCCCCcccccCCccEEEEcCCEEEEEEEEecCCCCEEEEEECCE
Confidence            99998888777777665310              0011122222 23445678899999999999999999999999999


Q ss_pred             ecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcceEEEEEEEec
Q psy7036         152 QVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFDS  208 (254)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~v~~  208 (254)
                      .+.......+.... +.  .+.|.|.+++.+|.|.|+|.|.|..|....++.|.|..
T Consensus       262 ~~~~~~~~~~~~~~-~~--~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~  315 (317)
T 2y25_A          262 ALASDDHCNLKFEA-GR--TAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVFI  315 (317)
T ss_dssp             EECCCSSEEECCBT-TT--EEEEEEBSCCSTTCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             eCCCCCcEEEEEcC-CC--EEEEEECCCCHHHCEEEEEEEEeCCCeEEEEEEEEEEc
Confidence            88765543332221 21  24899999999999999999999999998888888863

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}

Probab=99.94  E-value=5e-25  Score=167.03  Aligned_cols=188  Identities=15%  Similarity=0.135  Sum_probs=133.2

Q ss_pred             CCeeEeCCCceeecCCCeEEEEEEEeeCC-CCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEE
Q psy7036           8 APSFTQKPQLRQEDEGNRLIFECQLLCNP-KPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKV   86 (254)
Q Consensus         8 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C   86 (254)
                      +|.+...+....+.+|+.+.|.|.+.+.| .+.++|+|++..+..... ++... ..      .|.|.+++.+|+|.|+|
T Consensus       128 ~p~~~~~~~~~~~~~G~~v~L~C~~~g~p~~~~i~W~k~~~~l~~~~~-~~~~~-~~------~L~I~~v~~~D~G~Y~C  199 (329)
T 3oq3_B          128 PPSCIPETYELGTHDKYGIDLYCGILYAKHYNNITWYKNNQELIIDGT-KYSQS-GQ------NLIIHNPELEDSGRYDC  199 (329)
T ss_dssp             CCSCEEEEEETTSSTTTCEEEECCCCSCCCCCEEEEEETTEECCCSSS-SEEEE-TT------EEEECSCCGGGCEEEEE
T ss_pred             CCcEeccccceEEeCCCcEEEEeccCCCCCCceEEEEECCccCCCCCc-eEecC-CC------EEEEeecChhhCEEEEE
Confidence            34443333334467899999999999988 899999999998853322 22222 11      79999999999999999


Q ss_pred             EEEcC--CCceEE----EEEEEEeccccCCCCCccccCCCeeeecCCCeEEEEEEEeeCC---CC-eEEEEECCEeccc-
Q psy7036          87 KAKNK--MGEVAA----SINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQADP---AP-TVIWSHSGVQVKE-  155 (254)
Q Consensus        87 ~~~~~--~~~~~~----~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~---~~-~~~W~~~~~~~~~-  155 (254)
                      .+.|.  .|....    .+.|.|...+..  ..... .+....+..|+.+.|.|.+.+.|   .+ .+.|++++..+.. 
T Consensus       200 ~a~n~~~~g~~~~~~s~~~~l~V~~~~~~--~~~~~-~~~~~~v~~G~~~~l~C~~~g~p~~~~~i~v~W~~~g~~i~~~  276 (329)
T 3oq3_B          200 YVHYDDVRIKNDIVVSRCKILTVIPSQDH--RFKLI-LDPKINVTIGEPANITCTAVSTSLLVDDVLIDWENPSGWIIGL  276 (329)
T ss_dssp             EEEECCTTSSSCEEEEEEEEEEEECCCCC--CEEEE-CCSEEEECTTSCEEEEEEEEETTCCTTCCEEEEECTTSCBCCB
T ss_pred             EEEecccCCCceeEEEeeEEEEEECCCCC--CCcee-cCCeeEEecCCCEEEEEEEEECCCCCCCcEEEEEECCeeeecc
Confidence            99986  544322    366777532110  00222 45567888999999999999998   77 8999999887432 


Q ss_pred             CCcceEEEcCCCCceeeEEEEccCCCCCce-eEEEEEEcCCCcceEEEEEEE
Q psy7036         156 DKRHKFSIDKDGHSYFASLEIIDVTIEDAG-KYKVTAKNELGESNATISLNF  206 (254)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G-~y~C~~~~~~~~~~~~~~~~v  206 (254)
                      ...........+....+.|.|.+++.+|.| .|+|.|.|..|....++.|.|
T Consensus       277 ~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~~Y~C~a~N~~G~~~~~~~l~v  328 (329)
T 3oq3_B          277 DFGVYSILTSSGGITEATLYFENVTEEYIGNTYTCRGHNYYFDKTLTTTVVL  328 (329)
T ss_dssp             CSSEEEEEEEETTEEEEEEEESSCCGGGTTCEEEEEEECSSCEEEEEEEEEE
T ss_pred             CCceeeeecccCceeEeEEEEEeccHHHCCCcEEEEEEecCCceEEEEEEEe
Confidence            222111111122234568999999999999 999999999999888877765

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A

Probab=99.94  E-value=3.1e-25  Score=156.40  Aligned_cols=182  Identities=14%  Similarity=0.123  Sum_probs=121.7

Q ss_pred             eEeCCCcee-ecCCCeEEEEEEEeeCCCCceEEEeCCE-EeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEE
Q psy7036          11 FTQKPQLRQ-EDEGNRLIFECQLLCNPKPDIVWFRGET-QLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKA   88 (254)
Q Consensus        11 ~~~~~~~~~-v~~g~~v~l~C~~~~~~~~~v~W~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~   88 (254)
                      +...|.... +.+|++++|.|.+.|.|.+.+.|+++.. .+.    ......  +   ....|.|.+++..|+|.|+|.+
T Consensus         3 v~i~p~~~~~~~~G~~v~L~C~~~g~P~p~i~W~~~~~~~~~----~~~~~~--~---~~~~L~I~~v~~~D~G~Y~C~a   73 (202)
T 1vca_A            3 IETTPESRYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLN----GKVTNE--G---TTSTLTMNPVSFGNEHSYLCTA   73 (202)
T ss_dssp             EEEESSSEEEEETTSCEEEEEEEESCSSCEEEEEETTCCCCS----SEEEEE--T---TEEEEEESSCCGGGCSEEEEEE
T ss_pred             EEECCCCcEEEcCCCcEEEEEeecCCCCCeEEEECCCCCCcc----ceEEEc--C---CccEEEECcCCHHHCEEEEEEE
Confidence            445555544 4599999999999999999999998432 111    111111  1   1236999999999999999999


Q ss_pred             EcCCCceEEEEEEEEeccccCCCCCccccCCCeeeecCCCeEEEEEEEeeCCC---CeEEEEECCEecccCCcceEEEcC
Q psy7036          89 KNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQADPA---PTVIWSHSGVQVKEDKRHKFSIDK  165 (254)
Q Consensus        89 ~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~---~~~~W~~~~~~~~~~~~~~~~~~~  165 (254)
                      .|..+.....+.|.|...     |........ ..+.+|+.++|.|.+.+.++   +.+.|+|++..+....... ....
T Consensus        74 ~n~~~~~~~~~~l~V~~~-----p~~~~~~~~-~~~~~G~~~~L~C~~~~~~p~~~~~i~W~k~~~~l~~~~~~~-~~~~  146 (202)
T 1vca_A           74 TCESRKLEKGIQVEIYSF-----PKDPEIHLS-GPLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLE-DADR  146 (202)
T ss_dssp             EETTEEEEEEEEEEEEBC-----CSCCEEEES-SCEETTSCEEEEEEEEEEBSGGGEEEEEEETTEEEEEEECCS-CCSS
T ss_pred             EECCceEeeEEEEEEEeC-----CCCCEeCCc-eEEcCCCCEEEEEEECCcCCCCCeEEEEEeCCeECccccccc-ccCc
Confidence            999887777888888631     211111122 45778999999999987643   3799999998774321000 0000


Q ss_pred             C-CCceeeEEEEccCCCCCceeEEEEEEcCCCcc-------eEEEEEEEec
Q psy7036         166 D-GHSYFASLEIIDVTIEDAGKYKVTAKNELGES-------NATISLNFDS  208 (254)
Q Consensus       166 ~-~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~-------~~~~~~~v~~  208 (254)
                      . .....+.|.|.....+|.|.|+|.|.|..+..       ..++.|.|..
T Consensus       147 ~~~~~~~~~l~i~~~~~d~~g~ytC~A~n~~~~~~~~~~~~~~~~~L~V~y  197 (202)
T 1vca_A          147 KSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDEMDSVPTVRQAVKELQVYI  197 (202)
T ss_dssp             CCCEEEEEEEEECCCGGGTTCEEEEEEEECSCCCTTSCSEEEEEEECCEEC
T ss_pred             CcceEEEEEEEEEeeeccCCCeEEEEEEccccCCCCcceeEeeEEEEEEec
Confidence            0 11223467788888889999999999987652       3456666653

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae}

Probab=99.94  E-value=1.8e-25  Score=163.04  Aligned_cols=181  Identities=17%  Similarity=0.234  Sum_probs=123.1

Q ss_pred             eEeCCCceeecCCCeEEEEEEEee---CCCCceEEEeCCEEee-----e-----------------------CCcceEEE
Q psy7036          11 FTQKPQLRQEDEGNRLIFECQLLC---NPKPDIVWFRGETQLS-----E-----------------------DTRTVMKT   59 (254)
Q Consensus        11 ~~~~~~~~~v~~g~~v~l~C~~~~---~~~~~v~W~~~~~~~~-----~-----------------------~~~~~~~~   59 (254)
                      +...+..+.+.+|++++|.|.+.+   .+.+.+.|++++....     .                       ....+...
T Consensus         5 v~~~~~~v~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~   84 (250)
T 2fbo_J            5 VRTTHTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGDFLGRASV   84 (250)
T ss_dssp             EECSCSEEEECTTSCEEECCEEEECSCCSCCEEEEEEEEETTEEEEEEEEEECCCBTTBCCCTTSEEEEECGGGTTTEEC
T ss_pred             EEcCCCceEEecCCeEEEEEEeEcCCCCCceEEEEEeCCCCCccEEEEeeccccccccccccccccccccCCCcCceEEe
Confidence            445666788999999999999987   7788999999874321     0                       00111111


Q ss_pred             eecCCcceEEEEEEeccCCCCCeEEEEEEEcCCCce-----EEEEEEEEeccccCCCCCccc-cCCCeeeecCCCeEEEE
Q psy7036          60 TPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGEV-----AASINLNFSREQIDGLAPTFL-KKPSIRQEDDGKRLLFE  133 (254)
Q Consensus        60 ~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~-----~~~~~l~v~~~~~~~~~~~~~-~~~~~~~~~~g~~~~l~  133 (254)
                      ...    ....|.|.+++.+|+|.|+|.+.+..+..     ...+.|.|....   .++.+. ..+....+.+|+.+.|.
T Consensus        85 ~~~----~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~---~~~~~~~~~~~~~~v~~g~~v~L~  157 (250)
T 2fbo_J           85 ANL----AAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHT---PSNNVHVSTAEVVQVDEGNDITMT  157 (250)
T ss_dssp             SCT----TSCCEEECSCCGGGCEEEEEEEECTTCCSGGGEEEEEEEEEETTTS---CCSCCEECCCSEEECCTTCCEEEC
T ss_pred             ccC----CcceEEEeeCChhhCeEEEEEeccCccCCcccccceeEEEEEeccC---CCCeEEEecCceEEecCCCcEEEE
Confidence            110    12379999999999999999999877642     456777775321   122222 33445667789999999


Q ss_pred             EEEeeCCCCeEEEEECCEecccCCcceEEE------------cC--CCCc---eeeEEEEccCCCCCceeEEEEEEcCCC
Q psy7036         134 CRIQADPAPTVIWSHSGVQVKEDKRHKFSI------------DK--DGHS---YFASLEIIDVTIEDAGKYKVTAKNELG  196 (254)
Q Consensus       134 C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~------------~~--~~~~---~~~~l~i~~~~~~d~G~y~C~~~~~~~  196 (254)
                      |.+.+.|.|.+.|++++..+..........            ..  ....   ....|.|.+++.+|+|.|+|.|.|..|
T Consensus       158 C~~~g~p~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g  237 (250)
T 2fbo_J          158 CPCTDCANANVTWYTGPTFFENYETGTYQPLANKNQFGITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQG  237 (250)
T ss_dssp             CCEESCTTCEEEEEEEEECSSCSSSCEEEEEEEECTTSCEEECTTTTTSEEEETTTEEEECSCCGGGCEEEEEEEESSSS
T ss_pred             EEecCCCCCeeEEEeCCCcccccccCcceeEeccCCCCccccCceEecccccCCccEEEEecCCcccCEEEEEEecCCcc
Confidence            999999999999999988765432111000            00  0000   013799999999999999999999766


Q ss_pred             cc
Q psy7036         197 ES  198 (254)
Q Consensus       197 ~~  198 (254)
                      ..
T Consensus       238 ~~  239 (250)
T 2fbo_J          238 EL  239 (250)
T ss_dssp             GG
T ss_pred             cc
Confidence            43

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G

Probab=99.94  E-value=1.2e-26  Score=164.63  Aligned_cols=182  Identities=14%  Similarity=0.299  Sum_probs=130.9

Q ss_pred             CCeeEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeCCEEee----------eCCcceEEEeecCCcceEEEEEEeccC
Q psy7036           8 APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLS----------EDTRTVMKTTPIGTNKYLVALELDDVI   77 (254)
Q Consensus         8 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~l~i~~~~   77 (254)
                      ++.|...+....+.+|+++.|.|.+.+.|.+.+.|++++..+.          .....++....       ..|.|.+++
T Consensus         4 ~~~i~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-------~~L~i~~~~   76 (209)
T 1nbq_A            4 SVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLP-------TGITFKSVT   76 (209)
T ss_dssp             CCEEECSCSBCCEETTCCCEEECEEESCSSEEEEEEEEETTEEEESEETTEECTTTTTTCEEET-------TEEECSCCC
T ss_pred             eEEEEcCCCceEEEcCCCEEEEEEEeCCCCcEEEEEEcCCceeEEEEecCccCccccCceEeec-------cEEEEeeCC
Confidence            4567778888899999999999999988899999999765421          11111111111       279999999


Q ss_pred             CCCCeEEEEEEEcCCCc--eEEEEEEEEeccccCCCCCccccCCCeeeecCCCeEEEEEEE-eeCCCCeEEEEECCEecc
Q psy7036          78 ETDAGLYKVKAKNKMGE--VAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRI-QADPAPTVIWSHSGVQVK  154 (254)
Q Consensus        78 ~~d~G~Y~C~~~~~~~~--~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~~~~~~~~W~~~~~~~~  154 (254)
                      ..|+|.|+|.+.+..+.  ....+.|.|.      .+|..........+..|+.+.|.|.+ .+.|.+.+.|++++..+.
T Consensus        77 ~~d~G~Y~C~~~~~~g~~~~~~~~~l~V~------~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~~~~~~~~  150 (209)
T 1nbq_A           77 REDTGTYTCMVSEEGGNSYGEVKVKLIVL------VPPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMP  150 (209)
T ss_dssp             TTSCSEEEEEEEETTSSCEECCEEECCEE------BCCCCCCCCCBSEEETTSCEEECCCCCSCBSCCEEEEEETTCCCC
T ss_pred             HHHCcEEEEEEecCCCCccceEEEEEEEe------cCCcCCCcccccceecCCEEEEEEeCCCCCCCceeEEEECCeeCC
Confidence            99999999999987653  3345566665      23333333334567789999999996 889999999999998776


Q ss_pred             cCCcc-------eEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcc--eEEEEEEE
Q psy7036         155 EDKRH-------KFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGES--NATISLNF  206 (254)
Q Consensus       155 ~~~~~-------~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~--~~~~~~~v  206 (254)
                      .....       .+.....    .+.|.|.++..+|.|.|+|.|.|..|..  ...+.|.|
T Consensus       151 ~~~~~~~~~~~~~~~~~~~----~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~v~l~V  207 (209)
T 1nbq_A          151 TNPKSTRAFSNSSYVLNPT----TGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRMEA  207 (209)
T ss_dssp             SCSSSSSSCTTCCCCCCTT----TCCEEESSCCGGGCCCEEEEEECSSSCCEECCCBCCEE
T ss_pred             CccccceeeeccceEEcCC----cceEEEEeccccCCeEEEEEEeCCcCcccccccEEEEE
Confidence            54321       1111111    1379999999999999999999999987  33444443

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A

Probab=99.94  E-value=4.6e-25  Score=157.99  Aligned_cols=187  Identities=15%  Similarity=0.184  Sum_probs=122.3

Q ss_pred             eCCCceeecCCCeEEEEEEEeeCC-----CCceEEEeCCEEeeeCC-------------cceEEEeecCCcceEEEEEEe
Q psy7036          13 QKPQLRQEDEGNRLIFECQLLCNP-----KPDIVWFRGETQLSEDT-------------RTVMKTTPIGTNKYLVALELD   74 (254)
Q Consensus        13 ~~~~~~~v~~g~~v~l~C~~~~~~-----~~~v~W~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~l~i~   74 (254)
                      ..++.+.+.+|++++|.|.+.+.|     ...+.|+|++..+....             ..+.............+|.|.
T Consensus         6 ~p~~~v~~~~G~~v~L~C~~~~~p~~~~~~~~v~W~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~   85 (222)
T 3sbw_C            6 VPKDLYVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLKDQLSLGNAALQIT   85 (222)
T ss_dssp             CSCSEEEEETTSCEEEEEECCCCSSCCTTTCEEEEEETTEEEEEEETTEECSSSSCGGGSSSEEECHHHHTTTEEEEEES
T ss_pred             cCCccEEEEcCCcEEEEeEecCCCCCCCccEEEEEEECCcEEEEEeCCccccccccccccCceEEccccccCCEEEEEEc
Confidence            345667889999999999987655     34899999875432110             111221111111234589999


Q ss_pred             ccCCCCCeEEEEEEEcCCCceEEEEEEEEeccccCCCCCccccCCCeeeecCCCeEEEEEEEeeCCCCeEEEEEC-CEec
Q psy7036          75 DVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHS-GVQV  153 (254)
Q Consensus        75 ~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~-~~~~  153 (254)
                      +++.+|+|.|+|.+.+ .+.....+.|.|..      ++..........+..|+.+.|.|.+.+.|.+.+.|+++ +..+
T Consensus        86 ~v~~~D~G~Y~C~~~~-~~~~~~~~~l~V~~------~~~~~~~~~~~~~~~g~~v~L~C~~~g~P~p~i~W~~~~g~~~  158 (222)
T 3sbw_C           86 DVKLQDAGVYRCMISY-GGADYKRITVKVNA------PYNKINQRILVVDPVTSEHELTCQAEGYPKAEVIWTSSDHQVL  158 (222)
T ss_dssp             SCCGGGCEEEEEEEES-SSEEEEEEEEEEEB------CCCCCEEEEEEEETTTTEEEEEEEEEEBSCCEEEEEETTCCEE
T ss_pred             CcccccCeEEEEEEEe-CCCceeEEEEEEEC------CCCCCCceeeeeecCCCcEEEEEEecCCCCCeEEEEECCCcee
Confidence            9999999999999998 55666677788763      22211111112567899999999999999999999998 5554


Q ss_pred             ccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcceEEEEEEEec
Q psy7036         154 KEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFDS  208 (254)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~v~~  208 (254)
                      ............++. + ....+..+..+|.|.|+|.|.|..|.......|.|..
T Consensus       159 ~~~~~~~~~~~~~~~-~-~~~~~l~v~~~d~g~Y~C~a~n~~g~~~~~~~l~v~~  211 (222)
T 3sbw_C          159 SGKTTTTNSKREEKL-F-NVTSTLRINTTTNEIFYCTFRRLDPEENHTAELVIPE  211 (222)
T ss_dssp             CCEEEEEECC----C-E-EEEEEEEEECCTTCEEEEEEEETTTTEEEEEEEECCC
T ss_pred             cCccceEEEcCCCCC-E-EEEEEEEEeccCCcEEEEEEEeCccceeeEEEEEecC
Confidence            332211111112221 1 1222223456899999999999999998888888764

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*

Probab=99.94  E-value=2.5e-25  Score=157.82  Aligned_cols=179  Identities=15%  Similarity=0.239  Sum_probs=127.1

Q ss_pred             eEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeC-----------------CcceEEEeecCCcceEEEEEE
Q psy7036          11 FTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSED-----------------TRTVMKTTPIGTNKYLVALEL   73 (254)
Q Consensus        11 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~l~i   73 (254)
                      +...+....+.+|++++|.|...+.+.+.+.||+++......                 ...+.....+      .+|.|
T Consensus         2 ~~i~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~------~~L~i   75 (208)
T 3r4d_A            2 VTIEAVPPQVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSN------GSLLF   75 (208)
T ss_dssp             CEEEEESSEEETTCCEEEEEECCCSSCSEEEEEESSCCCGGGEEEEEEGGGTEEEECTTCCSSEEECTT------SCEEE
T ss_pred             ccccCccceeecCCcEEEEEeCCCCCceEEEeccCCCCCccceEEEEecCCCccccCccccceeEEecC------CeEEE
Confidence            344555668899999999999877888899999975422110                 0111111111      16999


Q ss_pred             eccCCCCCeEEEEEEEcCC-CceEEEEEEEEeccccCCCCCccccCCCeeeecCCCeEEEEEEEeeCCCCeEEEEECCEe
Q psy7036          74 DDVIETDAGLYKVKAKNKM-GEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQ  152 (254)
Q Consensus        74 ~~~~~~d~G~Y~C~~~~~~-~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~  152 (254)
                      .+++..|+|.|+|.+.+.. +.......|.|....   ..|.+......  +..|+.+.|.|.+.+.| +.+.|++++..
T Consensus        76 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~---~~p~i~~~~~~--~~~g~~v~l~C~~~~~p-p~i~W~~~g~~  149 (208)
T 3r4d_A           76 QMITMKDMGVYTLDMTDENYRRTQATVRFHVHQPV---TQPFLQVTNTT--VKELDSVTLTCLSNDIG-ANIQWLFNSQS  149 (208)
T ss_dssp             CSCCGGGCEEEEEEEECSSCEEEEEEEEEEEECCC---CCCEEEESCSS--CCTTCCEEEEEECSCTT-CEEEEEETTEE
T ss_pred             ccccccCCeEEEEEEEcccCceeEEEEEEEeccCC---CCCEEecCCce--EeeCCCEEEEEECCCCC-CceEEEECCEe
Confidence            9999999999999999885 455666777775321   22333333332  77899999999998866 79999999998


Q ss_pred             cccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcc-eEEEEEEEe
Q psy7036         153 VKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGES-NATISLNFD  207 (254)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~-~~~~~~~v~  207 (254)
                      +.......+  ..++    ..|.|.++..+|.|.|+|.|.|..|.. +..+.|.|.
T Consensus       150 l~~~~~~~~--~~~~----~~L~i~~v~~~d~G~Y~C~a~N~~g~~~s~~~~l~v~  199 (208)
T 3r4d_A          150 LQLTERMTL--SQNN----SILRIDPIKREDAGEYQCEISNPVSVRRSNSIKLDII  199 (208)
T ss_dssp             CCCCSSEEE--ETTT----TEEEESSCCGGGCEEEEEEEECTTCCEECCCEEECCC
T ss_pred             CCCCCCeEE--cCCC----CEEEEeccCHHhCeEEEEEEecCCCcccCCceeeeEE
Confidence            875554333  2222    279999999999999999999999976 345666554

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.94  E-value=4.7e-26  Score=172.99  Aligned_cols=186  Identities=24%  Similarity=0.399  Sum_probs=137.0

Q ss_pred             ceeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcCCCceE
Q psy7036          17 LRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVA   96 (254)
Q Consensus        17 ~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~   96 (254)
                      ...+.+|+++.|.|.+.+.|.+.+.|++++..+....+....... .   ....|.|.+++..|+|.|+|.+.|..|...
T Consensus       132 ~~~v~~g~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~-~---~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~  207 (334)
T 1ry7_B          132 LLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLR-H---QQWSLVMESVVPSDRGNYTCVVENKFGSIR  207 (334)
T ss_dssp             EEEEETTCCEEEECCCCCSSCCEEECCBTTBCCCTTSSTTCCCCC-T---TTTEEEECSCCGGGCCCEEEEEEETTEEEE
T ss_pred             eEEecCCCcEEEEEEccCCCCCeEEEEECCEECcccccccceecc-c---ceEEEEECCCCcccCEEEEEEEEeCCCCEE
Confidence            357889999999999999999999999999887654432111111 1   112799999999999999999999998888


Q ss_pred             EEEEEEEeccccCCCCCcccc-CCCeeeecCCCeEEEEEEEeeCCCCeEEEEE----CCEecccCCcceEEEcCCC----
Q psy7036          97 ASINLNFSREQIDGLAPTFLK-KPSIRQEDDGKRLLFECRIQADPAPTVIWSH----SGVQVKEDKRHKFSIDKDG----  167 (254)
Q Consensus        97 ~~~~l~v~~~~~~~~~~~~~~-~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~----~~~~~~~~~~~~~~~~~~~----  167 (254)
                      ..+.|.|.....  .+|.+.. .+....+..|+.+.|.|.+.+.|.+.+.|++    ++..+..............    
T Consensus       208 ~~~~l~V~~~~~--~~p~~~~~~~~~~~~~~G~~v~l~C~~~g~p~p~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  285 (334)
T 1ry7_B          208 QTYTLDVLERSP--HRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANT  285 (334)
T ss_dssp             EEEEEEEECCCC--SSCBCCTTCSCCEEEESSCCEEECCCCBCSSCEEEEEEECCCGGGCSBCTTSSBCCCCCCCSSCSC
T ss_pred             EEEEEEEecCCC--CCCceEecCCCceEEeCCCCEEEEEEEecCCCCeEEEEECCcCCCccccCCCCeeEEEeecCcccc
Confidence            888888864211  1232222 2345678889999999999999999999999    6666543332111111111    


Q ss_pred             -CceeeEEEEccCCCCCceeEEEEEEcCCCcceEEEEEEEec
Q psy7036         168 -HSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFDS  208 (254)
Q Consensus       168 -~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~v~~  208 (254)
                       ....+.|.|.++..+|.|.|+|.|.|..|....++.|.|..
T Consensus       286 ~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~  327 (334)
T 1ry7_B          286 TDKELEVLSLHNVTFEDAGEYTCLAGNSIGFSHHSAWLVVLP  327 (334)
T ss_dssp             SCTTCCCEEECSCCTTSCSEEEEEEEESSCCEEEEEEEEEEC
T ss_pred             ccccccEEEEccCCHHHCEEEEEEEeCCCCeEEEEEEEEEEE
Confidence             01123799999999999999999999999999999888875

>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens}

Probab=99.94  E-value=1.7e-26  Score=162.36  Aligned_cols=175  Identities=14%  Similarity=0.122  Sum_probs=113.4

Q ss_pred             CCCeeEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEE
Q psy7036           7 FAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKV   86 (254)
Q Consensus         7 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C   86 (254)
                      .+|.|...|.. .+.+|++|+|.|.+.+.+. .+.|+|++..+......      .........|.|.+++..|+|.|+|
T Consensus         4 ~~P~i~~~p~~-~v~~G~~v~L~C~~~~~~~-~~~W~k~g~~~~~~~~~------~~~~~~~~~L~i~~v~~~D~G~Y~C   75 (196)
T 2d3v_A            4 SKATLWAEPGS-VISRGNSVTIRCQGTLEAQ-EYRLVKEGSPEPWDTQN------PLEPKNKARFSIPSMTEHHAGRYRC   75 (196)
T ss_dssp             CBCEEEEESCS-EEETTCCEEEEEECCTTCC-EEEEEETTCSSCSEEEC------CCSSTTEEEEEESSCCGGGCEEEEE
T ss_pred             CCCEEEeCCCC-cccCCCeEEEEEeCCCCCc-EEEEEECCCCCCccccc------ccCCccccEEEeccCChhHCeEEEE
Confidence            57888888875 7899999999999987665 89999999865421110      0011223479999999999999999


Q ss_pred             EEEcCCCce--EEEEEEEEeccccCCCCCccccCCCeeeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEEc
Q psy7036          87 KAKNKMGEV--AASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSID  164 (254)
Q Consensus        87 ~~~~~~~~~--~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~  164 (254)
                      .+.|..+..  ...+.|.|...   ..+|.+...+ ...+.+|+.++|.|.+.+.| +.+.|+|++..+........ ..
T Consensus        76 ~a~n~~g~~~~s~~~~l~V~~~---~~~p~i~~~~-~~~v~~G~~v~L~C~~~~~p-~~~~W~k~g~~~~~~~~~~~-~~  149 (196)
T 2d3v_A           76 YYYSPAGWSEPSDPLELVVTGF---YNKPTLSALP-SPVVTSGENVTLQCGSRLRF-DRFILTEEGDHKLSWTLDSQ-LT  149 (196)
T ss_dssp             EEEETTEECBCCCCEEEEEECS---SCCCEEEC------------CEEEEEESSCC-SEEEEEEC---CCEEEEECE-EC
T ss_pred             EEeCCCCcCCcCccEEEEecCC---CCCCeEEccC-CccccCCCcEEEEEEcCCCC-CEEEEEccCCcccccccccc-cc
Confidence            999876532  34566777531   1234433332 24677899999999998888 89999999987642211101 11


Q ss_pred             CCCCceeeEEEEccCCCCCceeEEEEEEcCCC
Q psy7036         165 KDGHSYFASLEIIDVTIEDAGKYKVTAKNELG  196 (254)
Q Consensus       165 ~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~  196 (254)
                      ..+ .....|.|.+++.+|+|.|+|.|.|..+
T Consensus       150 ~~~-~~~~~L~I~~v~~~D~G~Y~C~a~n~~~  180 (196)
T 2d3v_A          150 PSG-QFQALFPVGPVTPSHRWMLRCYGSRRHI  180 (196)
T ss_dssp             TTS-CEEEEEECCCCBTTBCEEEEEEEEETTE
T ss_pred             cCC-CceeEEEeeecCcccCeeEEEEEEccCC
Confidence            111 1123799999999999999999998754

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}

Probab=99.94  E-value=1.9e-25  Score=168.00  Aligned_cols=188  Identities=17%  Similarity=0.315  Sum_probs=135.3

Q ss_pred             CCeeEeCCC-ceeecCCCeEEEEEEEe-eCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEE
Q psy7036           8 APSFTQKPQ-LRQEDEGNRLIFECQLL-CNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYK   85 (254)
Q Consensus         8 ~p~~~~~~~-~~~v~~g~~v~l~C~~~-~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~   85 (254)
                      +|.+...+. ...+.+|+.+.|.|.+. +.|.+.+.|++++..+....++.+......   ....|.|.+++..|+|.|+
T Consensus       106 ~p~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~i~~~~~~~~~~~~~~---~~~~L~i~~~~~~d~G~Y~  182 (312)
T 2y23_A          106 FPTVPVKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNT---GIIEMFMEKLQDEDEGTYT  182 (312)
T ss_dssp             SCBCCEEEEEEEEECSSSCEEEEEEESCCCSSCEEEEEETTEEECSSSSCEEEEETTT---TEEEEEESCCCGGGCEEEE
T ss_pred             CCccccccCCceEEeeCCCEEEEEEEEeCCCCCEEEEEECCEECeeCCcEEEEEccCC---CEEEEEEccCCcccCEeEE
Confidence            444443333 67889999999999998 789999999999999987766655443222   2347999999999999999


Q ss_pred             EEEEcCCCceEEEEEEEEeccc---------------cCCCCCccccCCCeeeecCCCeEEEEEEEeeCCCC-eEEEEEC
Q psy7036          86 VKAKNKMGEVAASINLNFSREQ---------------IDGLAPTFLKKPSIRQEDDGKRLLFECRIQADPAP-TVIWSHS  149 (254)
Q Consensus        86 C~~~~~~~~~~~~~~l~v~~~~---------------~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~-~~~W~~~  149 (254)
                      |.+.+.....  ...+.+....               ....+|.+... ....+..|+.+.|.|.+.+.|.+ .+.|+++
T Consensus       183 C~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~  259 (312)
T 2y23_A          183 FQLQDGKATN--HSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEY-LSWEVTGECNVLLKCKVANIKKETHIVWYKD  259 (312)
T ss_dssp             EEEESSSCEE--EEEEEECTHHHHHHHHHHHHHHHHHHHHHSSEEEEE-EEEEEETTTEEEEEEEEESCCSSCEEEEEET
T ss_pred             EEEEeCCceE--EEEEEEcchhhhhhcccccccccchhhccCCceeec-ceEEEeCCCEEEEEEEEcCCCCCCEEEEeeC
Confidence            9998654433  3333331100               00012322211 12567799999999999999888 9999999


Q ss_pred             CEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcceEEEEEEEe
Q psy7036         150 GVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFD  207 (254)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~v~  207 (254)
                      +..+.......+.   ++   ...|.|.++..+|+|.|+|.|.|..|....++.|.+.
T Consensus       260 g~~~~~~~~~~~~---~~---~~~L~I~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~i~  311 (312)
T 2y23_A          260 EREISVDEKHDFK---DG---ICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDE  311 (312)
T ss_dssp             TEEEEEECCC-------C---EEEEEECSCSGGGCEEEEEEEESTTCCEEEEEEECSC
T ss_pred             CEECCCCCcEEEE---CC---EEEEEECcCCHHHCEEEEEEEEcCCCceeeeeEEEec
Confidence            9988654433322   11   2389999999999999999999999999888877653

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A

Probab=99.94  E-value=1.2e-25  Score=154.45  Aligned_cols=163  Identities=15%  Similarity=0.247  Sum_probs=122.9

Q ss_pred             CCeeEeCCCceeecCCCeEEEEEEEeeCC-CCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEE
Q psy7036           8 APSFTQKPQLRQEDEGNRLIFECQLLCNP-KPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKV   86 (254)
Q Consensus         8 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C   86 (254)
                      .|.+...|....+.+|+++.|.|.+.+.+ .+.+.|++++..+.....               .+.+.+++..|+|.|+|
T Consensus         4 ~p~i~~~p~~~~v~~G~~v~l~C~~~~~p~~~~~~W~~~g~~~~~~~~---------------~~~~~~~~~~d~G~Y~C   68 (170)
T 3ry4_A            4 KAVLKLEPPWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPTHTQ---------------PSYRFKANNNDSGEYTC   68 (170)
T ss_dssp             BCEEEEESCCSEEETTCEEEEEEESCCCSSSSCEEEEETTEECTTCCS---------------SEEEEECCGGGCEEEEE
T ss_pred             CCEEEeCCCCeEEECCCcEEEEEEecCCCCcceEEEEECCeEcccCcc---------------ceEEEecccccCeEEEE
Confidence            56777888877899999999999998876 678999999998765422               36677899999999999


Q ss_pred             EEEcCCCceEEEEEEEEeccccCCCCCccccCCCeeeecCCCeEEEEEEEe-eCCCCeEEEEECCEecccCCcceEEEcC
Q psy7036          87 KAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQ-ADPAPTVIWSHSGVQVKEDKRHKFSIDK  165 (254)
Q Consensus        87 ~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~-~~~~~~~~W~~~~~~~~~~~~~~~~~~~  165 (254)
                      .+.+.....  .+.|.|..      ++.... .....+.+|+.+.|.|.+. +.|.+.+.|++++..+....       .
T Consensus        69 ~~~~~~~s~--~~~l~v~~------~~~~~~-~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~-------~  132 (170)
T 3ry4_A           69 QTGQTSLSD--PVHLTVLF------EWLVLQ-TPHLEFQEGETIMLRCHSWKDKPLVKVTFFQNGKSQKFSH-------L  132 (170)
T ss_dssp             EETTSBCCC--CEEEEEEC------CSEEEE-CSCSEECTTCCEEEEEEEGGGCCEEEEEEEETTEEEEEES-------S
T ss_pred             EEeCCCceE--eEEEEEEC------CceEec-CCCceeecCCeEEEEEECCCCCCCceEEEEECCeEccccC-------C
Confidence            998755433  45666652      222222 2234577899999999994 45668999999988764211       1


Q ss_pred             CCCceeeEEEEccCCCCCceeEEEEEEcCCCc-ceEEEEEEE
Q psy7036         166 DGHSYFASLEIIDVTIEDAGKYKVTAKNELGE-SNATISLNF  206 (254)
Q Consensus       166 ~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~-~~~~~~~~v  206 (254)
                      +     ..|.|.+++.+|.|.|+|.+.|..|. .+..+.|.|
T Consensus       133 ~-----~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V  169 (170)
T 3ry4_A          133 D-----PTFSIPQANHSHSGDYHCTGNIGYTLFSSKPVTITV  169 (170)
T ss_dssp             C-----CEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             C-----CeEEEEeccccCCEEEEEEEEeCcCccccccEEEEE
Confidence            2     27999999999999999999999886 344555554

>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}

Probab=99.94  E-value=8.5e-25  Score=155.91  Aligned_cols=187  Identities=12%  Similarity=0.183  Sum_probs=126.8

Q ss_pred             eCCCceeecCCCeEEEEEEEeeCCCC---ceEEEeCCEEeeeC----------------CcceEEEeecCCcceEEEEEE
Q psy7036          13 QKPQLRQEDEGNRLIFECQLLCNPKP---DIVWFRGETQLSED----------------TRTVMKTTPIGTNKYLVALEL   73 (254)
Q Consensus        13 ~~~~~~~v~~g~~v~l~C~~~~~~~~---~v~W~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~l~i   73 (254)
                      ..|+.+.+.+|++++|.|.+.+.+.+   .|+|+|++..+...                ...++...........++|.|
T Consensus         4 ~~p~~vtv~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I   83 (218)
T 4frw_A            4 ETSDVVTVVLGQDAKLPCFYRGDSGEQVGQVAWARVDAGEGAQELALLHSKYGLHVSPAYEGRVEQPPPPRNPLDGSVLL   83 (218)
T ss_dssp             ECCSEEEEETTSCEEECCEECCCTTCEEEEEEEEEECSSSCEEEEEEEETTTEEEECGGGTTTEECCSSCCCTTBCCEEE
T ss_pred             eCCCeEEEEcCCCEEEEEEEEcCCCCCccEEEEEECCCCCCceeEEEecCCCCeEeCccccceEEEecccccCCeEEEEE
Confidence            45677889999999999999887654   48999976432111                011111111112222347999


Q ss_pred             eccCCCCCeEEEEEEEcCCCceEE-EEEEEEeccccCCCCCccccCCCeeeecCCCeEEEEEEEeeCCCCeEEEEECCEe
Q psy7036          74 DDVIETDAGLYKVKAKNKMGEVAA-SINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQ  152 (254)
Q Consensus        74 ~~~~~~d~G~Y~C~~~~~~~~~~~-~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~  152 (254)
                      .+++..|+|.|.|.+.+..+.... ...+.+..     .++..........+..|..+.+.|.+.+.|.|.+.|++++..
T Consensus        84 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~c~~~g~p~p~i~W~~~~~~  158 (218)
T 4frw_A           84 RNAVQADEGEYECRVSTFPAGSFQARLRLRVLV-----PPLPSLNPGPALEEGQGLTLAASCTAEGSPAPSVTWDTEVKG  158 (218)
T ss_dssp             SSCCGGGCEEEEEEEEEETTEEEEEEEEEEEEB-----CCCCEEEECSCEETTCCSEEEEEEEEEEBSCCEEEEEESSCC
T ss_pred             eeccHHHCCceeEEEEeccCceeeeEEEEEEee-----eccceeeeeeeeeeeeccccceeeeccCCcCceEEEEECCcc
Confidence            999999999999999876654333 33333331     222223333445667889999999999999999999999876


Q ss_pred             cccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcceEEEEEEEe
Q psy7036         153 VKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFD  207 (254)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~v~  207 (254)
                      +.....  . .........+.|.|.++..+|.|.|+|.|.|+.|.....+.+.|.
T Consensus       159 ~~~~~~--~-~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~g~~~~~~t~~v~  210 (218)
T 4frw_A          159 TTSSRS--F-KHSRSAAVTSEFHLVPSRSMNGQPLTCVVSHPGLLQDQRITHILH  210 (218)
T ss_dssp             EEEEEE--E-ECSSSEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECC
T ss_pred             cccCce--E-ecCCcEEEEEEEEEeeCCHHhCeEEEEEEEeCCCCeEEEEEEEEE
Confidence            643321  1 112222334689999999999999999999999987666655554

>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A

Probab=99.94  E-value=6.8e-26  Score=159.52  Aligned_cols=175  Identities=15%  Similarity=0.163  Sum_probs=117.4

Q ss_pred             CCCeeEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEE
Q psy7036           7 FAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKV   86 (254)
Q Consensus         7 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C   86 (254)
                      .+|.|...|.. .+.+|++++|.|.+.+.+. .+.|+|++..+........ .....     ..|.|.+++..|+|.|+|
T Consensus         4 ~~P~i~~~p~~-~v~~G~~v~L~C~~~~~~~-~~~W~k~g~~~~~~~~~~~-~~~~~-----~~L~i~~v~~~D~G~Y~C   75 (198)
T 1ugn_A            4 PKPTLWAEPGS-VITQGSPVTLRCQGGQETQ-EYRLYREKKTAPWITRIPQ-ELVKK-----GQFPIPSITWEHTGRYRC   75 (198)
T ss_dssp             CCCEEEEESCS-EEETTCCEEEEEECCTTCC-CEEEEESSSCCHHHHTSCH-HHHTT-----TEEEESSCCGGGCEEEEE
T ss_pred             CCCeEeccCCC-cccCCCcEEEEEEecCCCc-EEEEEECCccccccccccc-cCCcc-----cEEEECCCCHHHCeEEEE
Confidence            57888888874 7899999999999987665 6999999987642111100 00011     179999999999999999


Q ss_pred             EEEcCC-C--ceEEEEEEEEeccccCCCCCccccCCCeeeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEE
Q psy7036          87 KAKNKM-G--EVAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSI  163 (254)
Q Consensus        87 ~~~~~~-~--~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~  163 (254)
                      .+.|.. +  .....+.|.|...   ..+|.+...+ ...+.+|+.+.|.|.+.+. .+.+.|+|++..+..... ....
T Consensus        76 ~a~n~~~g~~~~s~~~~l~V~~~---~~~p~i~~~~-~~~v~~G~~v~L~C~~~~~-~~~v~W~k~g~~~~~~~~-~~~~  149 (198)
T 1ugn_A           76 YYGSDTAGRSESSDPLELVVTGA---YIKPTLSAQP-SPVVNSGGNVTLQCDSQVA-FDGFILCKEGEDEHPQCL-NSQP  149 (198)
T ss_dssp             EEEETTTEECCCCCCEEEEEECS---SCCCEEEEES-CSEEETTCCEEEEEECSSC-CSEEEEEEC------CEE-EC--
T ss_pred             EEECCCCCcccCCccEEEEEccc---ccCCccccCC-ccccCCCCcEEEEEecCCC-CcEEEEEECCCccCCccc-cccc
Confidence            999876 4  3345566777531   1123333222 2467789999999999888 779999999987642211 1111


Q ss_pred             cCCCCceeeEEEEccCCCCCceeEEEEEEcCCC
Q psy7036         164 DKDGHSYFASLEIIDVTIEDAGKYKVTAKNELG  196 (254)
Q Consensus       164 ~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~  196 (254)
                      ..++ .....|.|.+++.+|.|.|+|.|.|..+
T Consensus       150 ~~~~-~~~~~L~i~~v~~~D~G~Y~C~a~n~~~  181 (198)
T 1ugn_A          150 HARG-SSRAIFSVGPVSPSRRWWYRCYAYDSNS  181 (198)
T ss_dssp             -----CCEEEEEECCCCTTSCEEEEEEEECTTS
T ss_pred             cCCC-cceeEEEecccCcccCeEEEEEEEeCCC
Confidence            1111 0123799999999999999999999865

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R

Probab=99.94  E-value=1.9e-26  Score=193.32  Aligned_cols=219  Identities=21%  Similarity=0.373  Sum_probs=65.6

Q ss_pred             CeeEeCC-CceeecCCCeEEEEEEEee--CCCCceEEEeCCEEeeeCCcceEEEeec---CCcceEEEEEEeccCCCCCe
Q psy7036           9 PSFTQKP-QLRQEDEGNRLIFECQLLC--NPKPDIVWFRGETQLSEDTRTVMKTTPI---GTNKYLVALELDDVIETDAG   82 (254)
Q Consensus         9 p~~~~~~-~~~~v~~g~~v~l~C~~~~--~~~~~v~W~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~i~~~~~~d~G   82 (254)
                      |.+...+ ....+.+|++++|.|.+.+  .+.+.+.|++++..+.............   ......+.|.|.+++..|+|
T Consensus       224 ~~v~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G  303 (772)
T 3v2a_R          224 YDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQG  303 (772)
T ss_dssp             EEEEEECCSCEEEETTCCEEEEEEEEECTTCCCEEEEECC--------CEEEEC-----CCCEEEEEEEEESSCCSTTCS
T ss_pred             ceeeeCCCCceEEecCCcEEEEEEEecCCCCceeEEEecCCccCCCceeeeccccccccccceEEEEEEEECcCCcCCCe
Confidence            3444444 3468899999999999987  4567899999988764432221110000   22234558999999999999


Q ss_pred             EEEEEEEcCCCceEEEEEEEEeccccCCCCCcccc---CCCeeeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcc
Q psy7036          83 LYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLK---KPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRH  159 (254)
Q Consensus        83 ~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~---~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~  159 (254)
                      .|+|.+.|..+.....+.|.|..      +|.+..   ......+..|+.+.|.|.+.+.|.+.+.|++++..+..... 
T Consensus       304 ~Y~C~~~~~~~~~~~~~~l~V~~------~p~~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~g~~l~~~~~-  376 (772)
T 3v2a_R          304 LYTCAASSGLMTKKNSTFVRVHE------KPFVAFGSGMESLVEATVGERVRIPAKYLGYPPPEIKWYKNGIPLESNHT-  376 (772)
T ss_dssp             EEEEEEECSSCEEEEEEEEEEEC------CCC------------------------------------------------
T ss_pred             EEEEEEEcCCcceeEEEEEEEeC------CCeeEeccCCCCcEEEcCCCcEEEEEEEeeeCCCeEEEEECCEeCCCCce-
Confidence            99999999888877788888864      332221   12345677899999999999999999999999987754221 


Q ss_pred             eEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcceE--EEEEEEecCCCCCCCCCCCCeeecC----CccccccC
Q psy7036         160 KFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNA--TISLNFDSDDAPVPGEGTKPVFTER----PVTKQSDD  233 (254)
Q Consensus       160 ~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~p~~~~~----~~~~~~~~  233 (254)
                       +  ..+     ..|.|.++..+|.|.|+|.|.|..|....  .+.+.|..          +|.+...    +. ..+.+
T Consensus       377 -~--~~~-----~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~s~~~~l~v~~----------~P~~~~~~~~~~~-~~~~~  437 (772)
T 3v2a_R          377 -I--KAG-----HVLTIMEVSERDTGNYTVILTNPISKEKQSHVVSLVVYV----------PPQIGEKSLISPV-DSYQY  437 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             -E--ccc-----eeEEEecCChhcCceEEEEEEECCcCeEEEEEEEEEEec----------CCcccccccCCCc-cccCC
Confidence             1  111     27999999999999999999999886543  44444442          3333221    21 13678


Q ss_pred             CCCcEEEEEEEeccCCCc-eeC
Q psy7036         234 DLNDIVIECRLVGEPEPT-ISW  254 (254)
Q Consensus       234 g~~~~~l~C~~~~~p~p~-~~W  254 (254)
                      |+ .+.|.|.+.|.|.|. ++|
T Consensus       438 g~-~~~l~C~~~g~p~p~~v~W  458 (772)
T 3v2a_R          438 GT-TQTLTCTVYAIPPPHHIHW  458 (772)
T ss_dssp             ----------------------
T ss_pred             CC-cEEEEeEeccCCCCcEEEE
Confidence            88 999999999999996 988

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*

Probab=99.94  E-value=7e-25  Score=163.21  Aligned_cols=185  Identities=19%  Similarity=0.250  Sum_probs=138.4

Q ss_pred             eEeCCCceeecCCCeEEEEEEEeeCCCCc-eEEEe-CCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEE
Q psy7036          11 FTQKPQLRQEDEGNRLIFECQLLCNPKPD-IVWFR-GETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKA   88 (254)
Q Consensus        11 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~-v~W~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~   88 (254)
                      +...+....+.+|+++.|.|.+.+.+.+. +.|++ ++..+....+..+  ...+      .|.|.+++..|+|.|+|.+
T Consensus        92 ~~~~~~~~~v~~g~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~--~~~~------~L~i~~v~~~d~G~Y~C~a  163 (289)
T 3ejj_X           92 WNLLAQEVTVVEGQEAVLPCLITDPALKDSVSLMREGGRQVLRKTVYFF--SPWR------GFIIRKAKVLDSNTYVCKT  163 (289)
T ss_dssp             EEESCSEEEEETTSCEEECEEESCGGGGGSEEEEEGGGEECCTTCCEEE--ETTT------EEEESSCCGGGCEEEEEEE
T ss_pred             eecccceEEEecCCceEeEEEccCCCcceEEEEEecCCeecCCCccEEE--CCCC------CEEEeecccccCEEEEEEE
Confidence            66777888899999999999998766655 99986 6666654444332  2222      6999999999999999999


Q ss_pred             E-cCCCceEEEEEEEEeccccCCCCCccccCCCeeeecCCCeEEEEEEEee-CCCCeEEEEECCEecccCCcceEEEcCC
Q psy7036          89 K-NKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQA-DPAPTVIWSHSGVQVKEDKRHKFSIDKD  166 (254)
Q Consensus        89 ~-~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~~~~~~~W~~~~~~~~~~~~~~~~~~~~  166 (254)
                      . +..+.....+.|.|...  ...+|.+...+....+..|+.+.|.|.+.+ .|.+.+.|++++..+.......  ....
T Consensus       164 ~~~~~~~~~~~~~l~V~~~--~~~~p~i~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~~~~~~~~--~~~~  239 (289)
T 3ejj_X          164 MVNGRESTSTGIWLKVNRV--HPEPPQIKLEPSKLVRIRGEAAQIVCSATNAEVGFNVILKRGDTKLEIPLNSD--FQDN  239 (289)
T ss_dssp             EETTEEEECCCEEEEEESS--CCCCCEEEEESSSEECCSSSCEEEEEEEEESSSCCEEEEEETTEECCCCEEEE--ECSS
T ss_pred             EeCCCccccccEEEEEEEC--CCCCCeEEecCCceEEEeCCcEEEEEEeCCCCCceEEEEEECCEEeeccCCcc--cccc
Confidence            9 44445556677777531  113555555555566678999999999998 7889999999998875432211  1122


Q ss_pred             CCceeeEEEEccCCCCCceeEEEEEEcCCCcceEEEEEEEe
Q psy7036         167 GHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFD  207 (254)
Q Consensus       167 ~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~v~  207 (254)
                      .....+.|.|.+++.+|.|.|+|.|.|..|....++.|.+.
T Consensus       240 ~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~s~~L~~~  280 (289)
T 3ejj_X          240 YYKKVRALSLNAVDFQDAGIYSCVASNDVGTRTATMNFQVV  280 (289)
T ss_dssp             SEEEEEEEEESSCCSSSCEEEEEEEECSSCEEEEEEEEECC
T ss_pred             eEEeeEEEEEEeecccCCEEEEEEEEcCCCCccccEEEEEE
Confidence            22234589999999999999999999999999999888765

>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L*

Probab=99.93  E-value=1.3e-25  Score=159.81  Aligned_cols=186  Identities=12%  Similarity=0.166  Sum_probs=126.0

Q ss_pred             CeeEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeC--CEE---ee---------eCCcceEEEeecCCcceEEEEEEe
Q psy7036           9 PSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRG--ETQ---LS---------EDTRTVMKTTPIGTNKYLVALELD   74 (254)
Q Consensus         9 p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~--~~~---~~---------~~~~~~~~~~~~~~~~~~~~l~i~   74 (254)
                      |.+.+.| ...+.+|++++|.|.+.+.+.+.+.|+|.  +..   +.         ...++....     ......|.|.
T Consensus         2 ~~v~~~~-~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-----~~~~~~L~I~   75 (213)
T 3mj8_L            2 YTLTQPP-LVSVALGQKATITCSGDKLSDVYVHWYQQKAGQAPVLVIYEDNRRPSGIPDHFSGSN-----SGNMATLTIS   75 (213)
T ss_dssp             CCBBCCS-EEEEETTSCEEEEEECSSTTTSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEE-----ETTEEEEEES
T ss_pred             eeEEeCC-cEEEeCCCCEEEEEEcCCCCCceEEEEEECCCCCcEEEEEECCccCCCccCcEEEEe-----cCCEEEEEEC
Confidence            4566667 78899999999999999889999999982  211   11         111222211     1223479999


Q ss_pred             ccCCCCCeEEEEEEEcCCC---ceEEEEEEEEeccccCCCCCccccCCCeeeecCCCeEEEEEEEeeC-CC-CeEEEEEC
Q psy7036          75 DVIETDAGLYKVKAKNKMG---EVAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQAD-PA-PTVIWSHS  149 (254)
Q Consensus        75 ~~~~~d~G~Y~C~~~~~~~---~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~-~~~~W~~~  149 (254)
                      +++.+|+|.|+|.+.+..+   .......|.|...  ...+|.+...+....+..|+.+.|.|.+.+. |+ +.+.|+++
T Consensus        76 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~--~~~~P~i~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~  153 (213)
T 3mj8_L           76 KAQAGDEADYYCQSWDGTNSAWVFGSGTKVTVLGQ--PNAAPSVTLFPPSSEELKTNQATLVCMINGFYPADVAVTWEAD  153 (213)
T ss_dssp             SCCGGGCEEEEEEEEETTTTEEEEBCCEEEEEECS--CCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEET
T ss_pred             CCChhhCEEEEEEeccCCcceeEEcCceEEEEeCC--CCCCCeEEccCCCcccccCCcEEEEEEeeceeCCCeEEEEEcC
Confidence            9999999999999999877   3344566777531  1134444433333334479999999999885 33 48999999


Q ss_pred             CEecccCCcce-EEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcceEEE
Q psy7036         150 GVQVKEDKRHK-FSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATI  202 (254)
Q Consensus       150 ~~~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~  202 (254)
                      +..+....... ...........+.|.|.++..+|.|.|+|.|.|..+....++
T Consensus       154 g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~  207 (213)
T 3mj8_L          154 GTPITQGVKTTQPSKSDSKYMATSYLTMTADAWKSRNTFICKVTHGGNTVEKSL  207 (213)
T ss_dssp             TEEECTTEEECCCEEETTEEEEEEEEEEESHHHHSCSCEEEEEEETTEEEEEEE
T ss_pred             CcccCCCcccCCcCccCCcEEEEEEEEEeHHHcCCCCEEEEEEEECCccEEeee
Confidence            99886432111 111111122335799999999999999999999876555444

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R

Probab=99.93  E-value=2.7e-24  Score=162.04  Aligned_cols=181  Identities=18%  Similarity=0.273  Sum_probs=133.5

Q ss_pred             eeecCCCeEEEEEEE------eeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEE-c
Q psy7036          18 RQEDEGNRLIFECQL------LCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAK-N   90 (254)
Q Consensus        18 ~~v~~g~~v~l~C~~------~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~-~   90 (254)
                      ..+.+|+++.|.|.+      .+.|.+.++|++++..+..... +... ..+      .|.|.+++..|+|.|+|.+. |
T Consensus       113 ~~~~~g~~v~l~C~~~~~~~~~g~p~~~i~W~k~~~~l~~~~~-~~~~-~~~------~L~i~~v~~~d~G~Y~C~a~~n  184 (315)
T 1itb_B          113 QKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNI-HFSG-VKD------RLIVMNVAEKHRGNYTCHASYT  184 (315)
T ss_dssp             EEEETTSCEEEECSSCTTTCTTTTCCCCCEEEETTEECCCCSS-SEEE-ETT------EEEESSCCGGGCEEEEEEEEEE
T ss_pred             eEEecCCCeEEEEecccccccCCCCCCEEEEEECCEECCCccc-eEee-cCc------eEEEEeceehhCcEEEEEEEcC
Confidence            467899999999998      7788999999999999865332 2221 111      79999999999999999999 7


Q ss_pred             CCCce---EEEEEEEEeccccCCCCCccccCCCe-eeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcce----EE
Q psy7036          91 KMGEV---AASINLNFSREQIDGLAPTFLKKPSI-RQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHK----FS  162 (254)
Q Consensus        91 ~~~~~---~~~~~l~v~~~~~~~~~~~~~~~~~~-~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~----~~  162 (254)
                      ..|..   ...+.+.+... ....+|.+...+.. ..+..|+.+.|.|.+.+.|.+.+.|++++..+.......    ..
T Consensus       185 ~~g~~~~~~~~~~~~~~~~-~~~~~P~~~~~~~~~~~~~~g~~v~l~C~~~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~  263 (315)
T 1itb_B          185 YLGKQYPITRVIEFITLEE-NKPTRPVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYS  263 (315)
T ss_dssp             ETTEEEEEEEEEEEEEECC-CCCCCCEECSCCSEEEECCSSSCEEEEEEEEECTTSEEEEEETTEECCTTCSSEEEEEEE
T ss_pred             CCCcEEEEEEEEEEEEecC-CCCCCCEEecCCCCcEEEeCCCcEEEEEEEecCCCCeeEEEECCEECCccccccccccee
Confidence            77765   23334433321 11245555544443 467899999999999999999999999999887654311    11


Q ss_pred             EcCC--C--CceeeEEEEccCCCCC-ceeEEEEEEcCCCcceEEEEEEEe
Q psy7036         163 IDKD--G--HSYFASLEIIDVTIED-AGKYKVTAKNELGESNATISLNFD  207 (254)
Q Consensus       163 ~~~~--~--~~~~~~l~i~~~~~~d-~G~y~C~~~~~~~~~~~~~~~~v~  207 (254)
                      ....  .  ....+.|.|.+++.+| .|.|+|.|.|..|....++.|.|.
T Consensus       264 ~~~~~~~~~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~~G~~~~~~~l~v~  313 (315)
T 1itb_B          264 VENPANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQLIYP  313 (315)
T ss_dssp             ECCSSCGGGEEEEEEEEESSCCGGGGTSCEEEEEECTTCCEEEEEEEECC
T ss_pred             eeccCCCceeEEEEEEEEeecCHHHcCCceEEEEecCCCceeEEEEEEec
Confidence            1111  0  1234589999999999 999999999999999988888765

>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*

Probab=99.93  E-value=1.4e-25  Score=177.39  Aligned_cols=238  Identities=12%  Similarity=0.158  Sum_probs=141.0

Q ss_pred             CCeeEeCCCceeecCCCeEEEEEEEeeC-CC-CceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEE
Q psy7036           8 APSFTQKPQLRQEDEGNRLIFECQLLCN-PK-PDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYK   85 (254)
Q Consensus         8 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~-~~-~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~   85 (254)
                      +|.+...+....+.+|+.++|.|.+.+. |. +.++|++++..+... ........++.....+.|.|.++..+| |.|+
T Consensus       132 ~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~~~~~~~~-~~~~~~~~~~~~~~~s~L~i~~~~~~d-G~Y~  209 (457)
T 1hzh_H          132 GPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVH-TFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYI  209 (457)
T ss_dssp             CCEEEEECCCSCCCTTCCEEEEEEEESBBSCCCEEEETTTTBCTTEE-EEEEEECTTSCEEEEEEEEECSGGGGT-SCCE
T ss_pred             CCeEEecCccccccCCCcEEEEEEEeEEeCCCeEEEEEeCCEeccce-EcCceECCCCCEEEEEEEEecccccCC-ceEE
Confidence            4555444433456799999999999875 64 789999998643211 010111111222234479999999999 9999


Q ss_pred             EEEEcCCCceEEEEEEEEecccc-----------CCCCCcc-ccCCCeee-ecCCCeEEEEEEEeeCCCC----eEEEEE
Q psy7036          86 VKAKNKMGEVAASINLNFSREQI-----------DGLAPTF-LKKPSIRQ-EDDGKRLLFECRIQADPAP----TVIWSH  148 (254)
Q Consensus        86 C~~~~~~~~~~~~~~l~v~~~~~-----------~~~~~~~-~~~~~~~~-~~~g~~~~l~C~~~~~~~~----~~~W~~  148 (254)
                      |.+.|..+.......+.+.....           ...+|.+ ...+.... +..|+.+.|.|.+.+.+++    .+.|+|
T Consensus       210 C~a~n~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~p~v~~~~p~~~~~~~~G~~v~L~C~~~g~~p~p~~~~i~W~k  289 (457)
T 1hzh_H          210 CNVNHKPSNTKVDKKAEPKSCDKTHTCPPCPAPELLGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYV  289 (457)
T ss_dssp             EEEEEGGGTEEEEEECCCCCSCSSCSCCSCCCCCCSSSCEEEEECCCHHHHHCTTSCCCEEEEEECCCTTCCCCEEEEEE
T ss_pred             EEEEeCCCCcceeEEecccCCCcccccCCCCCccccCCceEEeECcCchhhcccCCceEEEEEEEcccCCCCceEEEEEe
Confidence            99999877654444444321100           0012332 22222222 5679999999999987553    899999


Q ss_pred             CCEecccCCcceEEEcCCCC-ceeeEEEEccCCCCCceeEEEEEEcCCCcceEEEEEEEecCCCCCCCCCCCCeeecCCc
Q psy7036         149 SGVQVKEDKRHKFSIDKDGH-SYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPV  227 (254)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~p~~~~~~~  227 (254)
                      ++..+............++. ...+.|.|.....+|.|.|+|.|.|..+.......+.+..      ....+|.+...+.
T Consensus       290 ~~~~~~~~~~~~~~~~~~g~~~~~~~l~i~~~d~~d~G~Y~C~a~n~~~~~~~~~~v~~~~------~~~~~P~v~~~~~  363 (457)
T 1hzh_H          290 DGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAK------GQPREPQVYTLPP  363 (457)
T ss_dssp             TTEEECCCEEEEEEECTTSCEEEEEEECCCHHHHHHTCCEEEEEECTTSSSCEEEEECCCC------CCCBCCEEEEECC
T ss_pred             CCccccccccccceecCCCcEEEEEEEEECHHHccCCCcEEEEEeCCCCCCcceEEEEccc------CCCCCCeEEEECC
Confidence            99887533222222222332 1122333333333449999999998766554444443211      0123566655443


Q ss_pred             cccccCCCCcEEEEEEEeccCCC--ceeC
Q psy7036         228 TKQSDDDLNDIVIECRLVGEPEP--TISW  254 (254)
Q Consensus       228 ~~~~~~g~~~~~l~C~~~~~p~p--~~~W  254 (254)
                      ......++ .+.|.|.+.|.|+|  .++|
T Consensus       364 ~~~~~~~~-~~~l~C~~~g~~p~~~~v~W  391 (457)
T 1hzh_H          364 SRDELTKN-QVSLTCLVKGFYPSDIAVEW  391 (457)
T ss_dssp             CGGGGGSS-EEEEEEEEEEEBSSCCEEEE
T ss_pred             CccccCCC-cEEEEEEEEeEECCCCEEEE
Confidence            33345677 69999999997554  7888

>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=99.93  E-value=8.3e-25  Score=172.35  Aligned_cols=234  Identities=15%  Similarity=0.227  Sum_probs=145.0

Q ss_pred             eCCCceeecCCCeEEEEEEEeeCC--CCceEEEeCC--EEe----e-------------eCCcceEEEeecCCcceEEEE
Q psy7036          13 QKPQLRQEDEGNRLIFECQLLCNP--KPDIVWFRGE--TQL----S-------------EDTRTVMKTTPIGTNKYLVAL   71 (254)
Q Consensus        13 ~~~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~~--~~~----~-------------~~~~~~~~~~~~~~~~~~~~l   71 (254)
                      ..|....+.+|++++|.|.+.+.+  .+.+.|||++  ..+    .             ...++.+...  . ....+.|
T Consensus         5 ~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~--~-~~~~~~L   81 (444)
T 1igt_B            5 QESGGGLVQPGGSLKLSCATSGFTFSDYYMYWVRQTPEKRLEWVAYISNGGGSTYYPDTVKGRFTISRD--N-AKNTLYL   81 (444)
T ss_dssp             EEECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECTTSSCEECCGGGTTTEEEEEE--T-TTTEEEE
T ss_pred             ecCCCeEEcCCCCEEEEEEcCCCccCCceEEEEEeCCCCCcEEEEEEecCCCceecCcccCCceEEEEe--C-CCCeEEE
Confidence            345567899999999999998754  5789999852  211    1             0112222211  1 1234589


Q ss_pred             EEeccCCCCCeEEEEEEEcCCCc---eEEEEEEEEeccccCCCCCccccCCCeeeecCCCeEEEEEEEeeC-CCC-eEEE
Q psy7036          72 ELDDVIETDAGLYKVKAKNKMGE---VAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQAD-PAP-TVIW  146 (254)
Q Consensus        72 ~i~~~~~~d~G~Y~C~~~~~~~~---~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~-~~~W  146 (254)
                      .|.+++.+|+|.|+|.+.+..+.   ......|.|...  ...+|.+........+..|+.+.|.|.+.+. |.+ .+.|
T Consensus        82 ~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~--~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W  159 (444)
T 1igt_B           82 QMSRLKSEDTAMYYCARHGGYYAMDYWGQGTTVTVSSA--KTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTW  159 (444)
T ss_dssp             EECSCCGGGCEEEEEEEECSSSCEEEEBCCEEEEECSC--CCBCCEEEEECCCSSCCCSSCEEEEEEEEEEBSSCCEEEE
T ss_pred             EECCCCHHHCEEEEEEEecCCcccccccCcEEEEecCC--CCCCCceeEecccccCCCCCcEEEEEEEcceeCCCcEEEE
Confidence            99999999999999999987543   122356666521  1123333221222234689999999999885 766 8999


Q ss_pred             EECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcceEEEEEEEecC--------CCCCCCCCC
Q psy7036         147 SHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFDSD--------DAPVPGEGT  218 (254)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~v~~~--------~~~~~~~~~  218 (254)
                      ++++..+......... ....+...+.|.|.+...+| |.|+|.|.|..+.......+.+...        ..+......
T Consensus       160 ~~~~~~~~~~~~~~~~-~~~~~~~~s~L~i~~~~~~d-g~Y~C~a~n~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  237 (444)
T 1igt_B          160 NSGSLSSGVHTFPAVL-QSDLYTLSSSVTVTSSTWPS-QSITCNVAHPASSTKVDKKIEPRGPTIKPCPPCKCPAPNLLG  237 (444)
T ss_dssp             GGGTBCTTEEECCCEE-ETTEEEEEEEEEECSTTTTT-SCCEEEEEETTTTEEEEEECCCCCCSCCCCCCCSCCCSCCCC
T ss_pred             ecCCCCCCeEecCccc-cCCcEEEEEEEEEchhhcCC-CeEEEEEEeCCCCcceEEEeccCCCCcccCCccccCCcccCC
Confidence            9998763211111111 11112223579999999889 9999999999887655554433210        000001112


Q ss_pred             CCee-ecCCcccc-ccCCCCcEEEEEEEeccC---C-CceeC
Q psy7036         219 KPVF-TERPVTKQ-SDDDLNDIVIECRLVGEP---E-PTISW  254 (254)
Q Consensus       219 ~p~~-~~~~~~~~-~~~g~~~~~l~C~~~~~p---~-p~~~W  254 (254)
                      +|.+ ...|.... +.+|+ .+.|.|.+.|.|   + +.++|
T Consensus       238 ~p~v~~~~p~~~~~~~~G~-~~~L~C~~~g~~~~p~~~~v~W  278 (444)
T 1igt_B          238 GPSVFIFPPKIKDVLMISL-SPIVTCVVVDVSEDDPDVQISW  278 (444)
T ss_dssp             CCEEEEECCCHHHHHCTTS-CCEEEEEEEEECTTCCCCEEEE
T ss_pred             CceEEecCCchhheeecCC-CcEEEEEEeecccCCCCeEEEE
Confidence            4554 44444333 57898 999999999984   3 57888

>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ...

Probab=99.93  E-value=4.3e-25  Score=157.21  Aligned_cols=190  Identities=18%  Similarity=0.239  Sum_probs=125.8

Q ss_pred             eeEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeCC--EEe----------eeCCcceEEEeecCCcceEEEEEEeccC
Q psy7036          10 SFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGE--TQL----------SEDTRTVMKTTPIGTNKYLVALELDDVI   77 (254)
Q Consensus        10 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~--~~~----------~~~~~~~~~~~~~~~~~~~~~l~i~~~~   77 (254)
                      .+++.|....+.+|++++|.|.+.+.+.+.+.|+|++  ..+          ......++....   ......|.|.+++
T Consensus         3 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~---~~~~~~L~I~~v~   79 (213)
T 3d9a_L            3 VLTQSPATLSVTPGNSVSLSCRASQSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSG---SGTDFTLSINSVE   79 (213)
T ss_dssp             CEEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEE---ETTEEEEEESSCC
T ss_pred             eEEeCCccEEEeCCCcEEEEEECCCCCCCCEEEEEeCCCCCcEEEEEEcccccccccccEEEEc---CCCEEEEEECCCC
Confidence            3566688889999999999999998888899999843  111          011111222111   1123489999999


Q ss_pred             CCCCeEEEEEEEcCCCceE-EEEEEEEeccccCCCCCccccCCCeeeecCCCeEEEEEEEee-CCCC-eEEEEECCEecc
Q psy7036          78 ETDAGLYKVKAKNKMGEVA-ASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQA-DPAP-TVIWSHSGVQVK  154 (254)
Q Consensus        78 ~~d~G~Y~C~~~~~~~~~~-~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~~~~-~~~W~~~~~~~~  154 (254)
                      .+|+|.|+|.+.+..+... ....|.|...   ..+|.+...........|+.+.|.|.+.+ .|.+ .+.|++++..+.
T Consensus        80 ~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~---~~~p~v~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~~~  156 (213)
T 3d9a_L           80 TEDFGMYFCQQSNSWPYTFGGGTKLEIKRA---DAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQ  156 (213)
T ss_dssp             GGGCEEEEEEECSSSSCEECCCEEEEECCC---CBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEEEC
T ss_pred             hhhCEEEEEeeecCCcceeCCCEEEEEecC---CCCceeEeECCChhhcCCCcEEEEEEEeeecCCceEEEEEcCCCcCc
Confidence            9999999999998776432 2345666421   12444433222222336889999999987 5555 899999999876


Q ss_pred             cC-Cc-ceEEEcCCC-CceeeEEEEccCCCCCceeEEEEEEcCCCcceEEEEEE
Q psy7036         155 ED-KR-HKFSIDKDG-HSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLN  205 (254)
Q Consensus       155 ~~-~~-~~~~~~~~~-~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~  205 (254)
                      .. .. .......++ +...+.|.|.++..+|.|.|+|.|.|..........+.
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~i~  210 (213)
T 3d9a_L          157 NGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFN  210 (213)
T ss_dssp             TTEEEEECCCCTTTCCEEEEEEEEEEHHHHHHCCEEEEEEECTTCSSCEEEEEE
T ss_pred             ceeeecCCCccCCCCCEEEEEEEEEeccccCCCCEEEEEEEEccCCCceEEEec
Confidence            54 11 111111222 12346899999999999999999999877665554443

>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens}

Probab=99.93  E-value=5.7e-25  Score=152.93  Aligned_cols=160  Identities=16%  Similarity=0.099  Sum_probs=117.1

Q ss_pred             CCCeeEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEE
Q psy7036           7 FAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKV   86 (254)
Q Consensus         7 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C   86 (254)
                      .+|.|...|.. .+.+|++++|.|.+.+ +.+.+.|+|++....         . ...     .|.|.+++..|+|.|+|
T Consensus         7 ~~P~i~~~p~~-~v~~G~~v~L~C~~~~-~~~~~~W~k~g~~~~---------~-~~~-----~L~i~~v~~~D~G~Y~C   69 (184)
T 2gi7_A            7 PKPSLQALPSS-LVPLEKPVTLRCQGPP-GVDLYRLEKLSSSRY---------Q-DQA-----VLFIPAMKRSLAGRYRC   69 (184)
T ss_dssp             CCCEEEEESCS-EEETTCCEEEEEECST-TCSEEEEEETTTCCE---------E-SSS-----EEEESSCCGGGCEEEEE
T ss_pred             CCCeEEeCCCc-cccCCCcEEEEEeCCC-CCCEEEEEECCcccc---------C-ccc-----EEEECcCChhhCceEEE
Confidence            57888888875 7899999999999976 778999999886511         1 111     79999999999999999


Q ss_pred             EEEcCCCc--eEEEEEEEEeccccCCCCCccccCCCeeeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEEc
Q psy7036          87 KAKNKMGE--VAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSID  164 (254)
Q Consensus        87 ~~~~~~~~--~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~  164 (254)
                      .+.|..+.  ....+.|.|...   ..+|.+...+ ...+.+|+.+.|.|.+.+.+ +.+.|+|++..+.....  ..  
T Consensus        70 ~a~n~~g~~~~s~~~~l~V~~~---~~~p~i~~~p-~~~v~~G~~v~l~C~~~~~~-~~~~w~k~g~~~~~~~~--~~--  140 (184)
T 2gi7_A           70 SYQNGSLWSLPSDQLELVATGV---FAKPSLSAQP-GPAVSSGGDVTLQCQTRYGF-DQFALYKEGDPAPYKNP--ER--  140 (184)
T ss_dssp             EEEETTEEBCCCCCEEEEEESS---SCCCEEEEEC-CCSSCCTTCEEEEEECSSCC-CEEEEEECCCCTTSCCC--CE--
T ss_pred             EEEcCCCccCCCCCEEEEecCc---CCCCEEEeCC-CceecCCCcEEEEEEcCCCC-cEEEEEECCCcCcceec--CC--
Confidence            99987653  234566666421   1234443333 34567899999999976554 69999999987654211  11  


Q ss_pred             CCCCceeeEEEEccCCCCCceeEEEEEEcCCC
Q psy7036         165 KDGHSYFASLEIIDVTIEDAGKYKVTAKNELG  196 (254)
Q Consensus       165 ~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~  196 (254)
                          .....|.|.+++.+|.|.|+|.|.|..+
T Consensus       141 ----~~~~~L~i~~v~~~D~G~Y~C~a~n~~~  168 (184)
T 2gi7_A          141 ----WYRASFPIITVTAAHSGTYRCYSFSSRD  168 (184)
T ss_dssp             ----EEEESSSEEEETTCCSEEEEEEEECTTS
T ss_pred             ----CceEEEEEccCCccCCeEEEEEEEeCCC
Confidence                1113688999999999999999999754

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C*

Probab=99.93  E-value=3.9e-25  Score=157.64  Aligned_cols=183  Identities=11%  Similarity=0.036  Sum_probs=126.0

Q ss_pred             CCCCeeEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEE--EEEEeccCCCCCeE
Q psy7036           6 DFAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLV--ALELDDVIETDAGL   83 (254)
Q Consensus         6 ~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~i~~~~~~d~G~   83 (254)
                      ..+|.|...|. ..+.+|++|+|.|.+.+ +.+.+.|+|+|..+...... ..  .   .....  .|.|.+++.+|+|.
T Consensus         7 ~~~P~i~~~p~-~~v~~G~~vtL~C~~~~-~~~~~~W~k~g~~~~~~~~~-~~--~---~~~~~~~~L~I~~v~~~D~G~   78 (218)
T 1uct_A            7 FPMPFISAKSS-PVIPLDGSVKIQCQAIR-EAYLTQLMIIKNSTYREIGR-RL--K---FWNETDPEFVIDHMDANKAGR   78 (218)
T ss_dssp             SCCCCEEESSC-SEEETTCCEEEEECCCT-TCSEEEEEEEETTEEEECSE-EC--C-------CCCEEEECSCCGGGCEE
T ss_pred             CCCCEEEecCC-CccCCCCCEEEEEEcCC-CCCEEEEEECCCcccccccc-cC--C---CCcceeeEEEEcccccccCEE
Confidence            35788888887 47899999999999975 67889999988655432211 00  0   00112  69999999999999


Q ss_pred             EEEEEEcCCCce--EEEEEEEEeccccCCCCCccccCCCeeeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcceE
Q psy7036          84 YKVKAKNKMGEV--AASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKF  161 (254)
Q Consensus        84 Y~C~~~~~~~~~--~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~  161 (254)
                      |+|.+.|..+..  ...+.|.|...   ..+|.+...+ ...+.+|+.++|.|...+.+.+.+.|+|+|..+...   ..
T Consensus        79 Y~C~a~n~~~~~~~s~~~~l~V~~~---~~~P~i~~~p-~~~v~~G~~v~L~C~~~~~~~~~~~W~k~g~~~~~~---~~  151 (218)
T 1uct_A           79 YQCQYRIGHYRFRYSDTLELVVTGL---YGKPFLSADR-GLVLMPGENISLTCSSAHIPFDRFSLAKEGELSLPQ---HQ  151 (218)
T ss_dssp             EEEEEEETTTEEEECCCEEEEEECS---SCCCEEEESS-CSEECTTCCCEEEEECSSSCCSEEEEEETTCSSCCS---EE
T ss_pred             EEEEEEcCCCceeecCCEEEEEcCc---ccCCEEEeCC-CCccCCCCCEEEEEeCCCCCCCEEEEEECCCccccc---cc
Confidence            999999876532  33456666531   1234443333 346789999999997667777899999999876431   11


Q ss_pred             EEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCC-----cceEEEEEEEec
Q psy7036         162 SIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELG-----ESNATISLNFDS  208 (254)
Q Consensus       162 ~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~-----~~~~~~~~~v~~  208 (254)
                      ....+     ..|.|.+++.+|+|.|+|.|.|...     ..+..+.|.|..
T Consensus       152 ~~~~~-----~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~s~~S~~~~l~V~g  198 (218)
T 1uct_A          152 SGEHP-----ANFSLGPVDLNVSGIYRCYGWYNRSPYLWSFPSNALELVVTD  198 (218)
T ss_dssp             ECSSS-----EEEECCSCCGGGCEEEEEEEECTTSTTEECCCCCCEEEEEC-
T ss_pred             CCCcc-----CEEEEccCCcccCEEEEEEEEcCCCCCcCCCCCCcEEEEEec
Confidence            11111     3799999999999999999998642     234456666654

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...

Probab=99.93  E-value=4.7e-25  Score=153.42  Aligned_cols=164  Identities=11%  Similarity=0.130  Sum_probs=119.5

Q ss_pred             ceeecCCCeEEEEEEEeeCCCCceEEEeCCEE--eeeCC----------cceEEEeecCCcceEEEEEEeccCCCCCeEE
Q psy7036          17 LRQEDEGNRLIFECQLLCNPKPDIVWFRGETQ--LSEDT----------RTVMKTTPIGTNKYLVALELDDVIETDAGLY   84 (254)
Q Consensus        17 ~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~--~~~~~----------~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y   84 (254)
                      .+.+.+|++++|.|.+.+.+.+.+.|++++..  +....          ..+..............|.|.+++..|+|.|
T Consensus         4 ~v~~~~G~~v~L~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~i~~v~~~D~G~Y   83 (184)
T 2ny1_B            4 VVLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTY   83 (184)
T ss_dssp             EEEEETTSCEEECCBCSSSSCCCEEEEETTCCEEEEEETTEEEECSCTTGGGEECCGGGGGGTBCCEEECSCCGGGCEEE
T ss_pred             cEEEeCCCCEEEEEEEcCCCceEEEEEeCCccceEEecCceEecCChhhCCccccccccccCCeEEEEEecCCHHHCEEE
Confidence            45788999999999998888899999999862  22111          1111111100011223699999999999999


Q ss_pred             EEEEEcCCCceEEEEEEEEeccccCCCCCccccCCCeeeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEEc
Q psy7036          85 KVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSID  164 (254)
Q Consensus        85 ~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~  164 (254)
                      +|.+.+..+    .+.|.|...         .. +....+.+|+.+.|.|.+.+.|.+.+.|++++..+.        . 
T Consensus        84 ~C~~~~~~~----~~~l~V~~~---------~~-~~~~~v~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~--------~-  140 (184)
T 2ny1_B           84 ICEVEDQKE----EVQLLVFGL---------TA-NSDTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNI--------Q-  140 (184)
T ss_dssp             EEEETTEEE----EEEEEEEEE---------EE-SSCSEEETTCCEEEEEECCTTCCCEEEEECTTSCEE--------E-
T ss_pred             EEEEEcCCC----cEEEEEEEe---------cC-CCCceeecCCCEEEEEEcCCCCCCEEEEEeCCCccc--------c-
Confidence            999987644    445555421         01 122356789999999999899999999999875441        1 


Q ss_pred             CCCCceeeEEEEccCCCCCceeEEEEEEcCCCcceEEEEEEEec
Q psy7036         165 KDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFDS  208 (254)
Q Consensus       165 ~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~v~~  208 (254)
                      .+     ..|.|.+++.+|.|.|+|.|.|..+.....+.|.|..
T Consensus       141 ~~-----~~L~i~~v~~~d~G~Y~C~a~n~~~~~~~~~~l~V~~  179 (184)
T 2ny1_B          141 GG-----KTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLA  179 (184)
T ss_dssp             ES-----SEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             Cc-----eEEEEecCCcCCCeEEEEEEEECCceEEEEEEEEEEe
Confidence            11     2799999999999999999999888888888888875

>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.93  E-value=5.8e-25  Score=153.43  Aligned_cols=168  Identities=15%  Similarity=0.129  Sum_probs=118.1

Q ss_pred             CCCeeEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEE
Q psy7036           7 FAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKV   86 (254)
Q Consensus         7 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C   86 (254)
                      .+|.|...|.. .+.+|++|+|.|.+.+ +...+.|+|+|..+.......      ........|.|.+++..|+|.|+|
T Consensus         3 ~~P~i~~~p~~-~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~~------~~~~~~~~L~I~~v~~~D~G~Y~C   74 (188)
T 1oll_A            3 PKPFIWAEPHF-MVPKEKQVTICCQGNY-GAVEYQLHFEGSLFAVDRPKP------PERINKVKFYIPDMNSRMAGQYSC   74 (188)
T ss_dssp             CCCEEEEESCS-EEETTCCEEEEEECCT-TCCEEEEEETTEEEEEECCSS------CTTCCEEEEEESSCCGGGCEEEEE
T ss_pred             CCCEEEeecCC-cCCCCCCEEEEEecCC-CCCEEEEEECCCccccccccc------CCCcceeEEEeCcCCcccCeEEEE
Confidence            36888888877 7899999999999864 456899999998765321100      011223379999999999999999


Q ss_pred             EEEcCCCc--eEEEEEEEEeccccCCCCCccccCCCeeeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEEc
Q psy7036          87 KAKNKMGE--VAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSID  164 (254)
Q Consensus        87 ~~~~~~~~--~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~  164 (254)
                      .+.+..+.  ....+.|.|...   ..+|.+...+ ...+.+|+.++|.|.+.+ +.+.+.|+|++..+...    ....
T Consensus        75 ~~~~~~~~~~~s~~~~l~V~~~---~~~p~i~~~p-~~~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~----~~~~  145 (188)
T 1oll_A           75 IYRVGELWSEPSNLLDLVVTEM---YDTPTLSVHP-GPEVISGEKVTFYCRLDT-ATSMFLLLKEGRSSHVQ----RGYG  145 (188)
T ss_dssp             EEEETTEECCCCCCEEEEEESC---SCCCEEEEES-CSEEETTCEEEEEEECSS-SCSEEEEEEESSSCEEE----EEEC
T ss_pred             EecCCCCCCCCCCceEEEeccc---CCCCeEEECC-CCccccCCEEEEEEEcCC-CCCEEEEEECCcccccc----ccCC
Confidence            99876442  234566666531   1234443333 345778999999999765 45689999998765431    1111


Q ss_pred             CCCCceeeEEEEccCCCCCceeEEEEEEcCC
Q psy7036         165 KDGHSYFASLEIIDVTIEDAGKYKVTAKNEL  195 (254)
Q Consensus       165 ~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~  195 (254)
                      ..    ...|.|.+++.+|+|.|+|.|.|..
T Consensus       146 ~~----~~~L~I~~v~~~d~G~Y~C~a~n~~  172 (188)
T 1oll_A          146 KV----QAEFPLGPVTTAHRGTYRCFGSYNN  172 (188)
T ss_dssp             SS----EEEEEEEECCGGGCEEEEEECEEET
T ss_pred             Cc----eeEEEECCCCcCCCcEEEEEEEcCC
Confidence            11    1379999999999999999999864

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}

Probab=99.93  E-value=3.5e-25  Score=164.99  Aligned_cols=190  Identities=14%  Similarity=0.170  Sum_probs=136.1

Q ss_pred             CCCeeEeCCCceeecCCCeEEEEEEEeeCCC-CceEEE-eCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCe-E
Q psy7036           7 FAPSFTQKPQLRQEDEGNRLIFECQLLCNPK-PDIVWF-RGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAG-L   83 (254)
Q Consensus         7 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~-~~v~W~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G-~   83 (254)
                      .+|.+...+....+.+|+.+.|.|.+.+ |. +.++|+ ++|..+....++.  ....+      .|.|.+++..|+| .
T Consensus        90 ~~~~~~~~~~~~~~~~g~~v~l~C~~~~-p~~~~v~W~~~~g~~l~~~~~~~--~~~~~------~L~i~~v~~~d~G~~  160 (290)
T 2o26_X           90 DPAKLFLVGLPLFGKEDSDALVRCPLTD-PQVSQYSLIECDGKSLPTDLTFV--PNPKA------GITIKNVKRAYHRLC  160 (290)
T ss_dssp             CSSCCBCCCCCEEEETTSCEEECCCBSC-CSCEEEEEEETTSCCCCTTCEEE--EETTT------EEEEESCCGGGTTCE
T ss_pred             CCCcccccccceEEecCCeEEEeCcCCC-CCCceEEEEeCCCcCCCCCCcee--eCCCC------CEEEecccHHHCCCE
Confidence            3444445666778889999999999985 77 899995 6777765543322  22222      6999999999999 9


Q ss_pred             EEEEEEcCCCceE-EEEEEEEeccccCCCCCccccCCCeeeecCCCeEEEEEEEeeCCCCe-EEEEECCEec----ccCC
Q psy7036          84 YKVKAKNKMGEVA-ASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQADPAPT-VIWSHSGVQV----KEDK  157 (254)
Q Consensus        84 Y~C~~~~~~~~~~-~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~-~~W~~~~~~~----~~~~  157 (254)
                      |+|.+.|..+... ..+.|.|...  ...+|.+...+....+..|+.+.|.|.+.+.|.+. +.|++++..+    ....
T Consensus       161 Y~C~a~n~~~~~~s~~~~l~V~~~--~~~~P~i~~~~~~~~v~~G~~v~l~C~~~g~p~p~~i~W~~~~~~~~~~~~~~~  238 (290)
T 2o26_X          161 VRCAAQRDGTWLHSDKFTLKVREA--IKAIPVVSVPETSHLLKKGDTFTVVCTIKDVSTSVNSMWLKMNPQPQHIAQVKH  238 (290)
T ss_dssp             EEEEEEETTEEEECCCEEEEEECC--CCSCCEEECSCSBCCCCTTCCEEEEEEEEESSTTCEEEEEEESSSEEECCCEEC
T ss_pred             EEEEEEECCceEEeEEEEEEEEeC--CCCCCccccCCCcceEecCCcEEEEEEEecCCcceeEEEecCCCCCccceeecc
Confidence            9999999855432 2466666521  12456665555566788999999999999999986 9999998763    2222


Q ss_pred             cceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcceEEEEEEEec
Q psy7036         158 RHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFDS  208 (254)
Q Consensus       158 ~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~v~~  208 (254)
                      ...+. ........+.|.|.++..+|+|.|+|.|.|..|.....+.|.|..
T Consensus       239 ~~~~~-~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~  288 (290)
T 2o26_X          239 NSWHR-GDFNYERQETLTISSARVDDSGVFMCYANNTFGSANVTTTLKVVE  288 (290)
T ss_dssp             CEEEE-ETTEEEEEEEEEESSCCSSSCEEEEEEEECSSCEEEEEEEECC--
T ss_pred             ccccc-CceeeEEEEEEEEcCCCcccCeEEEEEEeCCCCcEEEEEEEEEEe
Confidence            21121 110112235899999999999999999999999988888777753

>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L*

Probab=99.93  E-value=1.5e-24  Score=154.11  Aligned_cols=185  Identities=18%  Similarity=0.227  Sum_probs=122.8

Q ss_pred             eeEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeCC--EEe---e-------e--CCcceEEEeecCCcceEEEEEEec
Q psy7036          10 SFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGE--TQL---S-------E--DTRTVMKTTPIGTNKYLVALELDD   75 (254)
Q Consensus        10 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~--~~~---~-------~--~~~~~~~~~~~~~~~~~~~l~i~~   75 (254)
                      .+.+ |....+.+|++++|.|.+.+.+.+.+.|||++  ..+   .       .  ..++...  .   ....+.|.|.+
T Consensus         3 ~v~q-p~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~g~~~~~~~~~~~~~~~~~~~r~~~~--~---~~~~~~L~I~~   76 (210)
T 1lk3_L            3 VLTQ-PPALTVSPGEKLTISCKASESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGS--G---SGTDFTLTIDP   76 (210)
T ss_dssp             CEEC-CSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEE--E---ETTEEEEEESS
T ss_pred             cEEC-CCcEEEcCCCCEEEEeeCCCccCCCEEEEEECCCCCeEEEEEccccccCCccccEEEE--e---cCCEEEEEECC
Confidence            3455 88889999999999999998888899999842  211   1       0  1222221  1   11234899999


Q ss_pred             cCCCCCeEEEEEEEcCCCceE-EEEEEEEeccccCCCCCccccCCCeeeecCCCeEEEEEEEee-CCCC-eEEEEECCEe
Q psy7036          76 VIETDAGLYKVKAKNKMGEVA-ASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQA-DPAP-TVIWSHSGVQ  152 (254)
Q Consensus        76 ~~~~d~G~Y~C~~~~~~~~~~-~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~~~~-~~~W~~~~~~  152 (254)
                      ++.+|+|.|+|.+.+..+... ....|.|...   ..+|.+...........|+.+.|.|.+.+ .|.+ .+.|+++|..
T Consensus        77 v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~---~~~P~v~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~  153 (210)
T 1lk3_L           77 VEADDTAIYFCQQSWNGPLTFGAGTKLELKRA---DAAPTVSIFPPSTEQLATGGASVVCLMNNFYPRDISVKWKIDGTE  153 (210)
T ss_dssp             CCGGGCEEEEEEECSSSSCEECCCEEEEECCC---CBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEE
T ss_pred             CCHHHCeEEEEEEEcCCCceeCCCEEEEEcCC---CcCCeEEEECCchhhccCCcEEEEEEEEeEeCCceEEEEEeCCcc
Confidence            999999999999998766432 2345666421   12444433222222347899999999987 4443 8999999998


Q ss_pred             cccC-Cc-ceEEEcCCC-CceeeEEEEccCCCCCceeEEEEEEcCCCcceEEEE
Q psy7036         153 VKED-KR-HKFSIDKDG-HSYFASLEIIDVTIEDAGKYKVTAKNELGESNATIS  203 (254)
Q Consensus       153 ~~~~-~~-~~~~~~~~~-~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~  203 (254)
                      +... .. .......++ +...+.|.|.++..+|.|.|+|.|.|..........
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~  207 (210)
T 1lk3_L          154 RRDGVLDSVTDQDSKDSTYSMSSTLSLTKADYESHNLYTCEVVHKTSSSPVVKS  207 (210)
T ss_dssp             CCTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTTCSSCEEEE
T ss_pred             CCCCceEccCCccCCCCCEEEEEEEEEChHHhccCCcEEEEEEecCCCCeeeee
Confidence            7644 11 111111222 233468999999999999999999998765544433

>4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R

Probab=99.93  E-value=4.6e-24  Score=160.65  Aligned_cols=187  Identities=16%  Similarity=0.128  Sum_probs=136.1

Q ss_pred             CCCCCCeeEeCCCceeecCCCeEEEEEEEe-eCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCe
Q psy7036           4 AEDFAPSFTQKPQLRQEDEGNRLIFECQLL-CNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAG   82 (254)
Q Consensus         4 ~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~-~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G   82 (254)
                      .+...|.+...+....+..|+.+.+.|.+. +.|.+.+.|++++..+.....  ......+.....+.|.|.+.+..|+|
T Consensus       113 ~v~~~P~~~~~~~~~~~~~~~~~~~~C~~~~~~P~~~i~W~~~~~~~~~~~~--~~~~~~~~~~~~s~l~i~~~~~~d~g  190 (313)
T 4fqp_A          113 RVLAKPQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQ--VPGFLSGTVTVTSLWILVPSSQVDGK  190 (313)
T ss_dssp             CCBBCCEEEEEECCBCCCSSCEEEEEEEEEEEBSCCEEEEEETTCCEEEEEE--EECSSTTCEEEEEEEEECCCGGGTTC
T ss_pred             eeccCCcceecccceEeecCceEEEEEEccCccCCcEEEeecCCccccccce--eeeecccccccceeeeecccccccCe
Confidence            344567776666666778899999999875 689999999999887654322  11112222233446899999999999


Q ss_pred             EEEEEEEcCCCceE--EEEEEEEeccccCCCCCccc-cCCCeeeecCCCeEEEEEEEeeCCCC-eEEEEECCEecccCCc
Q psy7036          83 LYKVKAKNKMGEVA--ASINLNFSREQIDGLAPTFL-KKPSIRQEDDGKRLLFECRIQADPAP-TVIWSHSGVQVKEDKR  158 (254)
Q Consensus        83 ~Y~C~~~~~~~~~~--~~~~l~v~~~~~~~~~~~~~-~~~~~~~~~~g~~~~l~C~~~~~~~~-~~~W~~~~~~~~~~~~  158 (254)
                      .|+|.+.|..+...  ..+.|.|.      .+|.+. .......+..|+.+.|.|.+.|+|.| .+.|++++..+.... 
T Consensus       191 ~Y~C~a~n~~~~~~~~~~~~l~V~------~~P~v~~~~~~~~~~~~g~~v~l~C~~~g~P~p~~v~W~~~~~~l~~~~-  263 (313)
T 4fqp_A          191 NVTCKVEHESFEKPQLLTVNLTVY------YPPEVSISGYDNNWYLGQNEATLTCDARSNPEPTGYNWSTTMGPLPPFA-  263 (313)
T ss_dssp             EEEEEEECTTSSSCEEEEEECCBC------EEEEEEEECCCSCEETTCCCEEEEEEEEEESCCCEEEEEETTBSCCTTE-
T ss_pred             eEEEEEEccCcCccceeeeecccc------cCCccccccccceeecCCCeEEEEEEecCCCCCcEEEEEECCEECCCce-
Confidence            99999999776543  34444443      234332 22233456678999999999999988 699999998775321 


Q ss_pred             ceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcceEEEEEEEec
Q psy7036         159 HKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFDS  208 (254)
Q Consensus       159 ~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~v~~  208 (254)
                         .. .++     .|.|.++..+|+|.|+|.|.|..|....++.|.|..
T Consensus       264 ---~~-~~~-----~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~  304 (313)
T 4fqp_A          264 ---VA-QGA-----QLLIRPVDKPINTTLICNVTNALGARQAELTVQVKE  304 (313)
T ss_dssp             ---EE-ETT-----EEEECCCSSCCEEEEEEEEECSSCEEEEEEEEEEEC
T ss_pred             ---EE-eCC-----EEEECcCChhhCEEEEEEEEeCCCcEEEEEEEEEEe
Confidence               11 122     799999999999999999999999998888888875

>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A

Probab=99.92  E-value=2e-23  Score=165.79  Aligned_cols=239  Identities=15%  Similarity=0.201  Sum_probs=142.9

Q ss_pred             eEeCCCceeecCCCeEEEEEEEeeCC--CCceEEEeCC--EE---eee------------CCcceEEEeecCCcceEEEE
Q psy7036          11 FTQKPQLRQEDEGNRLIFECQLLCNP--KPDIVWFRGE--TQ---LSE------------DTRTVMKTTPIGTNKYLVAL   71 (254)
Q Consensus        11 ~~~~~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~~--~~---~~~------------~~~~~~~~~~~~~~~~~~~l   71 (254)
                      .++.|....+.+|++++|.|.+.+.+  ...+.|||+.  ..   +..            ....++....+ .....+.|
T Consensus         4 ~~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~-~~~~~~~L   82 (475)
T 1iga_A            4 LLEQSGAEVKKPGASVKVSCKASGYSFTSYGLHWVRQAPGQRLEWMGWISAGTGNTKYSQKFRGRVTFTRD-TSATTAYM   82 (475)
T ss_pred             eeccCCcEEEeCCCCEEEEEEecCCCCCCceEEEEEeCCCCCcEEEEEEecCCCceecCcccCCceEEEEc-CCCCeEEE
Confidence            34567788999999999999998654  5689999853  11   100            00112221111 11234589


Q ss_pred             EEeccCCCCCeEEEEEEEcCCCc------eEEEEEEEEeccccCCCCCccccCCCeeeecCCCeEEEEEEEeeC-CC-C-
Q psy7036          72 ELDDVIETDAGLYKVKAKNKMGE------VAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQAD-PA-P-  142 (254)
Q Consensus        72 ~i~~~~~~d~G~Y~C~~~~~~~~------~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~-~-  142 (254)
                      .|.+++.+|+|.|.|.+.+..+.      ......|.|...  ...+|.+..... .....|+.+.|.|.+.+. |. + 
T Consensus        83 ~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~l~V~~~--~~~~P~i~~~~~-~~~~~g~~v~L~C~~~g~~P~~p~  159 (475)
T 1iga_A           83 GLSSLRPEDTAVYYCARDPYGGGKSEFDYWGQGTLVTVSSA--SPTSPKVFPLSL-CSTQPDGNVVIACLVQGFFPQEPL  159 (475)
T ss_pred             EECCCChhhCEEEEEEEeccCCCccceeeecCceEEEeccC--CCcCCeEEecCc-cccCCCCeEEEEEEEeeecCCCce
Confidence            99999999999999999987652      223456666421  012333322221 123579999999999987 55 4 


Q ss_pred             eEEEEECCEecccCCcceEEEcCCC-CceeeEEEEccCCCCCceeEEEEEEcCCCcc-eEEEEEEEecCCC--------C
Q psy7036         143 TVIWSHSGVQVKEDKRHKFSIDKDG-HSYFASLEIIDVTIEDAGKYKVTAKNELGES-NATISLNFDSDDA--------P  212 (254)
Q Consensus       143 ~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~-~~~~~~~v~~~~~--------~  212 (254)
                      .+.|++++...............++ +...+.|.|.....+|.|.|+|.|.|..+.. ...+.+.|.....        .
T Consensus       160 ~v~W~~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~~~~v~l~V~~~~~~~~~~~~~~  239 (475)
T 1iga_A          160 SVTWSESGQGVTARNFPPSQDASGDLYTTSSQLTLPATQCLAGKSVTCHVKHYTNPSQDVTVPCPVPSTPPTPSPSTPPT  239 (475)
T ss_pred             EEEEcCCCcccceEeCCceecCCCCcEEEEEEEEechhHcCCCceEEEEEEECCCCceeeeEecccccCccccccccccc
Confidence            8999998753211110001101222 2233568898888899999999999987632 2333332311000        0


Q ss_pred             CCCCCCCCee-ecCCccccccCCCCcEEEEEEEeccCC---CceeC
Q psy7036         213 VPGEGTKPVF-TERPVTKQSDDDLNDIVIECRLVGEPE---PTISW  254 (254)
Q Consensus       213 ~~~~~~~p~~-~~~~~~~~~~~g~~~~~l~C~~~~~p~---p~~~W  254 (254)
                      ......+|.+ ...|....+.+|+ .+.|.|.+.|.++   +.++|
T Consensus       240 ~~~~~~~p~v~~~~p~~~~~~~G~-~v~L~C~~~g~~p~~~~~i~W  284 (475)
T 1iga_A          240 PSPSCCHPRLSLHRPALEDLLLGS-EANLTCTLTGLRDASGVTFTW  284 (475)
T ss_pred             CCCCCCCcEEEEcCCChHHhccCC-ceEEEEEEEcccCCCceEEEE
Confidence            0000023444 4344444467888 9999999998754   58888

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A*

Probab=99.92  E-value=1.2e-24  Score=160.34  Aligned_cols=207  Identities=18%  Similarity=0.217  Sum_probs=122.0

Q ss_pred             CCeeEeCCCceeecCCCeEEEEEEEe---eCCCCceEEEeCCEEeeeC----------------CcceEEEeecCCcceE
Q psy7036           8 APSFTQKPQLRQEDEGNRLIFECQLL---CNPKPDIVWFRGETQLSED----------------TRTVMKTTPIGTNKYL   68 (254)
Q Consensus         8 ~p~~~~~~~~~~v~~g~~v~l~C~~~---~~~~~~v~W~~~~~~~~~~----------------~~~~~~~~~~~~~~~~   68 (254)
                      .+.+...+....+.+|++++|.|.+.   +.+.+.+.|++++......                ...++.... ......
T Consensus         5 ~~~v~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~   83 (268)
T 3mj6_A            5 LPGLTVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQNRSHLVG-DTFHND   83 (268)
T ss_dssp             -------CCEEEEETTCCEEECCBCCCSSCCCEEEEEEEEESSSTTCCEEEEEEETTEEEECGGGTTTEEECS-CTTTTB
T ss_pred             ccccccCCCceEEecCCcEEEEEEeecCCCCceEEEEEEEeCCCCCceEEEEEEcCCCcccCccccCceEEee-cCCCCE
Confidence            45677778888999999999999997   5677789999955321000                001111111 011122


Q ss_pred             EEEEEeccCCCCCeEEEEEEEcCCCce--EEEEEEEEeccccCCCCCccccCCCeeeecCCCeEEEEEEE---eeCCCCe
Q psy7036          69 VALELDDVIETDAGLYKVKAKNKMGEV--AASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRI---QADPAPT  143 (254)
Q Consensus        69 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~--~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~---~~~~~~~  143 (254)
                      .+|.|.+++.+|+|.|+|.+.+..+..  ...+.|.|..           ..+....+..|+.+.|.|.+   .+.|.+.
T Consensus        84 ~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~-----------~~p~~~~v~~G~~v~L~C~~~~~~~~p~~~  152 (268)
T 3mj6_A           84 GSLLLQDVQKADEGIYTCEIRLKNESMVMKKPVELWVLP-----------EEPRDLRVRVGDTTQMRCSIQSTEEKRVTK  152 (268)
T ss_dssp             CCEEECSCCGGGCEEEEEEEEETTCCCEEEEEEEEEEEC-----------CCCSEEEEETTCCEEECCBCEESSSSCCCE
T ss_pred             EEEEECCCCHhHCEEEEEEEEecCCcceEEEEEEEEEec-----------cCCCccccccCCcEEEEEEecCCCCCCccc
Confidence            479999999999999999999876543  3445555531           12335678899999999999   5668899


Q ss_pred             EEEEECCEec-cc-------------------CCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcceEEEE
Q psy7036         144 VIWSHSGVQV-KE-------------------DKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATIS  203 (254)
Q Consensus       144 ~~W~~~~~~~-~~-------------------~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~  203 (254)
                      +.|++++... ..                   ....+.....+.......|.|.+++.+|.|.|+|.|.|..+.....+.
T Consensus       153 v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~  232 (268)
T 3mj6_A          153 VNWMFSSGSHTEEETVLSYDSNMRSGKFQSLGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTIV  232 (268)
T ss_dssp             EEEEEECTTCSSCEEEEEEETTSSSCEEECSSTTTTTEEECSCGGGTBCCEEECSCCGGGCEEEEEEEEETTEEEEEEEE
T ss_pred             eEEEecCCCCCcceeEEEecCCCCccccccccccccceEeeccCCCCeEEEEECcCChhhCeEEEEEEEcCCceEEEEEE
Confidence            9999943211 00                   000011111111111247999999999999999999999888888888


Q ss_pred             EEEecCCCCCCCCCCCCeeecCCccccccCCC
Q psy7036         204 LNFDSDDAPVPGEGTKPVFTERPVTKQSDDDL  235 (254)
Q Consensus       204 ~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~g~  235 (254)
                      |.|...         +|.+...|....+..++
T Consensus       233 l~V~~~---------~p~~~~~p~~~~~~~~q  255 (268)
T 3mj6_A          233 LHVVQD---------EFQRTISPTPPTDKGQQ  255 (268)
T ss_dssp             EEEECC--------------------------
T ss_pred             EEEEcC---------CCeeeeCCCCCCCCcce
Confidence            888542         34455555555555554

>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C region, hinge region, immunoglobulin; HET: NAG FUL NDG BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=99.92  E-value=3.8e-25  Score=173.80  Aligned_cols=236  Identities=12%  Similarity=0.162  Sum_probs=144.3

Q ss_pred             eCCCceeecCCCeEEEEEEEeeCC--CCceEEEeCC--EE---eeeC------------CcceEEEeecCCcceEEEEEE
Q psy7036          13 QKPQLRQEDEGNRLIFECQLLCNP--KPDIVWFRGE--TQ---LSED------------TRTVMKTTPIGTNKYLVALEL   73 (254)
Q Consensus        13 ~~~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~~--~~---~~~~------------~~~~~~~~~~~~~~~~~~l~i   73 (254)
                      ..+....+.+|++++|.|.+.+.+  .+.+.|||++  ..   +...            ...++....+. ....+.|.|
T Consensus         4 ~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~-~~~~~~L~I   82 (434)
T 1igy_B            4 QESGAELARPGASVKMSCKASGYTFTTYTIHWIKQRPGQGLEWIGYINPSSVYTNYNQRFKDKATLTRDR-SSNTANIHL   82 (434)
T ss_dssp             ECCCCCEECTBCCEEECCEECSSCGGGCCCEEEEECTTCCEEEEEECCSSSCCCCCCGGGTTTEECCBCG-GGCBBCEEE
T ss_pred             ECCCCeEecCCCCEEEEEEccCCcccCceEEEEEECCCCCCEEEEEEccCCCceecCccccccEEEEEEC-CCCEEEEEE
Confidence            455667899999999999998754  6789999863  21   1100            01122211111 112337999


Q ss_pred             eccCCCCCeEEEEEEEcCCCceEEEEEEEEeccccCCCCCccccCCCeeeecCCCeEEEEEEEeeC-CCC-eEEEEECCE
Q psy7036          74 DDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQAD-PAP-TVIWSHSGV  151 (254)
Q Consensus        74 ~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~-~~~W~~~~~  151 (254)
                      .+++.+|+|.|+|.+.+..+.......|.|...  ...+|.+........+..|+.+.|.|.+.+. |.+ .+.|++++.
T Consensus        83 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~V~~~--~~~~P~i~~~~~~~~~~~G~~v~L~C~~~g~~P~p~~v~W~k~~~  160 (434)
T 1igy_B           83 SSLTSDDSAVYYCVREGEVPYWGQGTTVTVSSA--KTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSL  160 (434)
T ss_dssp             CSBCGGGCSEECCCCSSSSCCCCCCEECEECCS--CCBCCCEEEECCCCCCCCTTEEEEEEEEEEEBSSCCEEEETTTTB
T ss_pred             CCCChHHCEEEEEEEEccccccCCceEEEEccC--CCCCCeEEEcCCccccCCCCcEEEEEEEeeecCCCeEEEEeeCCc
Confidence            999999999999999886444444556666521  0123333222222234689999999999886 666 899999987


Q ss_pred             ecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcceEEEEEEEecCCCCC---CCCCCCCeeecCCcc
Q psy7036         152 QVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPV---PGEGTKPVFTERPVT  228 (254)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~v~~~~~~~---~~~~~~p~~~~~~~~  228 (254)
                      .+........ .....+...+.|.|.++..+| |.|+|.|.|..+.......+.+......+   +....+..+...|..
T Consensus       161 ~~~~~~~~~~-~~~~~~~~~s~L~i~~~~~~d-g~Y~C~a~n~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~v~~~~p~~  238 (434)
T 1igy_B          161 SSGVHTFPAV-LQSDLYTLSSSVTVPSSPRPS-ETVTCNVAHPASSTKVDKKIVPRDCGCKPCICTVPEVSSVFIFPPKP  238 (434)
T ss_dssp             CSSEEECCCE-ECSSCEEEEEEEEEETTTTTS-SCCEEEEECTTTTCCEEEECCCCCCCCCCCCCCCSSSCCEEEECCCH
T ss_pred             CCCeEecCce-ecCCcEEEEEEEEEcchhcCC-CcEEEEEEeCCCCccceeeccCCCCCCccccCCCCcCcEEEEeCCCh
Confidence            5321110011 111222233579999999888 99999999998876555544332100000   000012333434433


Q ss_pred             cc-ccCCCCcEEEEEEEeccC----CCceeC
Q psy7036         229 KQ-SDDDLNDIVIECRLVGEP----EPTISW  254 (254)
Q Consensus       229 ~~-~~~g~~~~~l~C~~~~~p----~p~~~W  254 (254)
                      .. +.+|+ .+.|.|.+.|.|    .+.++|
T Consensus       239 ~~~v~~G~-~~~L~C~~~g~~p~P~~~~i~W  268 (434)
T 1igy_B          239 KDTLLITV-TPKVTCVVVDISKDDPEVQFSW  268 (434)
T ss_dssp             HHHHSTTS-CCEEEEEECCCCSSCCCCCBCB
T ss_pred             HHhcccCC-CcEEEEEEeccccCCCCeEEEE
Confidence            32 78899 999999999884    347888

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3

Probab=99.92  E-value=7.6e-25  Score=151.03  Aligned_cols=157  Identities=13%  Similarity=0.178  Sum_probs=112.0

Q ss_pred             ceeecCCCeEEEEEEEee--CCCCceEEEeCCEEeeeC--------CcceEEEeecCCcceEEEEEEeccCCCCCeEEEE
Q psy7036          17 LRQEDEGNRLIFECQLLC--NPKPDIVWFRGETQLSED--------TRTVMKTTPIGTNKYLVALELDDVIETDAGLYKV   86 (254)
Q Consensus        17 ~~~v~~g~~v~l~C~~~~--~~~~~v~W~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C   86 (254)
                      .+.+.+|++|+|.|...+  .+.+.+.|+|++..+...        ...++....++      +|.|.+++..|+|.|+|
T Consensus         5 ~v~~~~G~~v~L~c~~~~~~~~~~~i~W~k~~~~i~~~~~~~~~~~~~~r~~~~~~g------sL~I~~v~~~D~G~Y~C   78 (176)
T 1hng_A            5 TVWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANG------DLKIKNLTRDDSGTYNV   78 (176)
T ss_dssp             EEEEETTSCEEECCTTCCCCTTEEEEEEEETTEEEEEEETTSCCEESSTTEEECTTS------CEEESSCCGGGCEEEEE
T ss_pred             EEEEEcCCcEEEcCCCCCcccccccEEEEeCCceeEEEcCCCeecCCCCeEEECCCC------cEEEcccccccCEEEEE
Confidence            456789999999995433  456789999999765310        11122222121      59999999999999999


Q ss_pred             EEEcCCCce--EEEEEEEEeccccCCCCCccccCCCeeeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEEc
Q psy7036          87 KAKNKMGEV--AASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSID  164 (254)
Q Consensus        87 ~~~~~~~~~--~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~  164 (254)
                      .+.|..|..  ...+.|.|....   ..|.       .. ..+..+.|.|.+.+.|.+.+.|++++..+.....      
T Consensus        79 ~~~n~~g~~~~~~~~~l~V~~~~---~~p~-------i~-~~~~~v~L~C~~~g~p~p~i~W~~~g~~l~~~~~------  141 (176)
T 1hng_A           79 TVYSTNGTRILNKALDLRILEMV---SKPM-------IY-WECSNATLTCEVLEGTDVELKLYQGKEHLRSLRQ------  141 (176)
T ss_dssp             EEEETTCCEEEEEEEEEEEECCC---CCCE-------EE-EETTTTEEEEECSSCSSCEEEEEETTEEEEEESS------
T ss_pred             EEEeCCCCEEEEEEEEEEEeCCC---CCCE-------EE-ecCCcEEEEEEecCCCCcEEEEEECCEECCCCCc------
Confidence            999998876  566777775310   1111       11 1244589999999999999999999987754322      


Q ss_pred             CCCCceeeEEEEccCCCCCceeEEEEEEcCCCcceEEEEEE
Q psy7036         165 KDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLN  205 (254)
Q Consensus       165 ~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~  205 (254)
                               +.|.+++.+|.|.|+|.|.|..|.......|.
T Consensus       142 ---------~~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~  173 (176)
T 1hng_A          142 ---------KTMSYQWTNLRAPFKCKAVNRVSQESEMEVVN  173 (176)
T ss_dssp             ---------SEEEEECSCCSSCEEEEEEETTEEEEEEECCC
T ss_pred             ---------EEEEEEEccCCeEEEEEEEecCCCceeccccc
Confidence                     33446778999999999999999877766554

>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus musculus} PDB: 2qhr_L 3ffd_B 4dcq_A

Probab=99.92  E-value=3.2e-24  Score=153.17  Aligned_cols=187  Identities=12%  Similarity=0.197  Sum_probs=119.1

Q ss_pred             CeeEeCCCceeecCCCeEEEEEEEeeC-CCCceEEEeCC---E--Ee-eeCC----------cceEEEeecCCcceEEEE
Q psy7036           9 PSFTQKPQLRQEDEGNRLIFECQLLCN-PKPDIVWFRGE---T--QL-SEDT----------RTVMKTTPIGTNKYLVAL   71 (254)
Q Consensus         9 p~~~~~~~~~~v~~g~~v~l~C~~~~~-~~~~v~W~~~~---~--~~-~~~~----------~~~~~~~~~~~~~~~~~l   71 (254)
                      |.+++.| ...+.+|++++|.|.+.+. +.+.+.|||.+   .  .+ ....          ..++....   ....++|
T Consensus         2 ~~v~~~p-~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~---~~~~~~L   77 (218)
T 3s96_B            2 LVLTQSS-SASFSLGASAKLTCTLNSQHSTYTIEWYQQQPLKPPKYVMELKKDGSHSTGDGIPDRFSGSS---SGADRYL   77 (218)
T ss_dssp             CSEECCS-EEEEETTSCEEEEEEECGGGTTCCEEEEEECTTSCCEEEEEECTTSCEEECSSCCTTEEEEE---ETTEEEE
T ss_pred             CeEEeCC-cEEECCCCcEEEEEECCCCCCCcEEEEEEECCCCCeEEEEEEcccCccccCCCcccceEEec---CCceEEE
Confidence            4566677 8889999999999999988 88999999832   1  11 1000          01111111   1223479


Q ss_pred             EEeccCCCCCeEEEEEEEcCCC-----ceEEEEEEEEeccccCCCCCccccCCCeeeecCCCeEEEEEEEee-CCCC-eE
Q psy7036          72 ELDDVIETDAGLYKVKAKNKMG-----EVAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQA-DPAP-TV  144 (254)
Q Consensus        72 ~i~~~~~~d~G~Y~C~~~~~~~-----~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~~~~-~~  144 (254)
                      .|.+++.+|+|.|+|.+.+..+     .......|.|....  ..+|.+...........|+.+.|.|.+.+ .|.+ .+
T Consensus        78 ~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~--~~~P~~~~~~~~~~~~~~~~v~L~C~~~g~~p~~~~v  155 (218)
T 3s96_B           78 SISNIQPEDEAIYICGVGDTIKEQFVYVFGGGTKVTVLGQP--KSTPTLTVFPPSSEELKENKATLVCLISNFSPSGVTV  155 (218)
T ss_dssp             EESSCCGGGCEEEEEEEEEEETTEEEEEECCCEEEEEESCC--CBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEE
T ss_pred             EEccCCcccCEEEEEEEecCCCCceeEEEcCcEEEEEecCC--CCCceEEeeCCCcccccCCcEEEEEEECcccCCCeEE
Confidence            9999999999999999998775     22334566765311  13344333222233345789999999988 5666 89


Q ss_pred             EEEECCEecccCCcceEEEcCCC-CceeeEEEEccCCCCCceeEEEEEEcCCCcceEE
Q psy7036         145 IWSHSGVQVKEDKRHKFSIDKDG-HSYFASLEIIDVTIEDAGKYKVTAKNELGESNAT  201 (254)
Q Consensus       145 ~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~  201 (254)
                      .|++++..+............++ ....+.|.|.....+|.|.|+|.|.|..+....+
T Consensus       156 ~W~k~g~~l~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~  213 (218)
T 3s96_B          156 AWKANGTPITQGVDTSNPTKEGNKFMASSFLHLTSDQWRSHNSFTCQVTHEGDTVEKS  213 (218)
T ss_dssp             EEEETTEEC--------------CEEEEEEEEEEHHHHHTCSCEEEEEEETTEEEEEE
T ss_pred             EEEECCEECcCceecCcccccCCcEEEEEEEEEeHHHccCCCeEEEEEEeCCCccccc
Confidence            99999998865322111111122 2223468888888889999999999987655444

>3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; anti-CD3epsilon, T-cell receptor, signalling, IMMU; 2.50A {Cricetulus migratorius} PDB: 3r08_L 3ld8_B 3ldb_B*

Probab=99.92  E-value=2.5e-24  Score=153.26  Aligned_cols=188  Identities=15%  Similarity=0.193  Sum_probs=126.4

Q ss_pred             CeeEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeCC---E--Eeee---------CCcceEEEeecCCcceEEEEEEe
Q psy7036           9 PSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGE---T--QLSE---------DTRTVMKTTPIGTNKYLVALELD   74 (254)
Q Consensus         9 p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~---~--~~~~---------~~~~~~~~~~~~~~~~~~~l~i~   74 (254)
                      |.+.+.|....+.+|++++|.|.+.+.+.+.+.|||.+   .  .+..         ..++...  .   ....+.|.|.
T Consensus         2 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~--~---~~~~~~L~I~   76 (213)
T 3r06_A            2 IQMTQSPSSLPASLGDRVTINCQASQDISNYLNWYQQKPGKAPKLLIYYTNKLADGVPSRFSGS--G---SGRDSSFTIS   76 (213)
T ss_dssp             CCEEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEE--E---ETTEEEEEES
T ss_pred             CeeEeCCCEEEecCCCcEEEEEEeCCCcCceEEEEEECCCCCcEEEEEEcCcCCCCCCCcEEEe--c---cCCEEEEEEC
Confidence            56777788899999999999999998888999999832   1  1111         1222222  1   1233489999


Q ss_pred             ccCCCCCeEEEEEEEcCCCc-eEEEEEEEEeccccCCCCCccccCCCeeeecCCCeEEEEEEEeeCCC--CeEEEEECCE
Q psy7036          75 DVIETDAGLYKVKAKNKMGE-VAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQADPA--PTVIWSHSGV  151 (254)
Q Consensus        75 ~~~~~d~G~Y~C~~~~~~~~-~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~--~~~~W~~~~~  151 (254)
                      +++.+|+|.|+|.+.+..+. ......|.|..   ...+|.+...+.......|+.+.|.|.+.+.++  +.+.|++++.
T Consensus        77 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~---~~~~p~v~~~~~~~~~~~~~~v~l~C~~~g~~p~~~~v~W~k~g~  153 (213)
T 3r06_A           77 SLESEDIGSYYCQQYYNYPWTFGPGTKLEIKR---ADAKPTVSIFPPSSEQLGTGSATLVCFVNNFYPKDINVKWKVDGS  153 (213)
T ss_dssp             SCCGGGCSEEEEEECSSSSCEECCCEEEEECC---CCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCEEEEEEETTE
T ss_pred             CCCcccCEEEEEecccCCceEEcCCceEEEec---cCCCceeeeeCCCceecCCCCcEEEEEEeeecCCceEEEEEECCc
Confidence            99999999999999887543 23345566631   124454444333334456888999999988654  3799999999


Q ss_pred             ecccCC--cceEEEcCCC-CceeeEEEEccCCCCCceeEEEEEEcCCCcceEEEEE
Q psy7036         152 QVKEDK--RHKFSIDKDG-HSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISL  204 (254)
Q Consensus       152 ~~~~~~--~~~~~~~~~~-~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~  204 (254)
                      .+....  ........++ +...+.|.|.....+|.|.|+|.|.|..........+
T Consensus       154 ~l~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~g~YtC~v~n~~~~~~~~~~~  209 (213)
T 3r06_A          154 EKRDGVLQSVTDQDSKDSTYSLSSTLSLTKADYERHNLYTCEVTHKTSTAAIVKTL  209 (213)
T ss_dssp             EECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEEETTCSSCEEEEE
T ss_pred             ccCCceEeccCceeCCCCcEEEEEEEEeCHHHhccCCeEEEEEEecccCcceEEec
Confidence            876431  1111111222 2334578888888889999999999987655544443

>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 3tnm_L 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A ...

Probab=99.92  E-value=1.3e-24  Score=154.44  Aligned_cols=184  Identities=15%  Similarity=0.180  Sum_probs=122.5

Q ss_pred             CeeEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeC--CEEee------------eCCcceEEEeecCCcceEEEEEEe
Q psy7036           9 PSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRG--ETQLS------------EDTRTVMKTTPIGTNKYLVALELD   74 (254)
Q Consensus         9 p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~--~~~~~------------~~~~~~~~~~~~~~~~~~~~l~i~   74 (254)
                      |.+.+.+ ...+.+|++++|.|.+.  +.+.+.|||+  +..+.            ...++....     ....++|.|.
T Consensus         2 ~~v~~~~-~~~v~~G~~v~L~C~~~--~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-----~~~~~~L~I~   73 (211)
T 3tv3_L            2 SALTQPP-SASGSPGQSITISCTGT--SNNFVSWYQQHAGKAPKLVIYDVNKRPSGVPDRFSGSK-----SGNTASLTVS   73 (211)
T ss_dssp             -CCBCCS-EEEECTTCEEEEEEECC--CSSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEE-----ETTEEEEEEE
T ss_pred             ceEEeCc-eEEEcCCCCEEEEEEEC--CCCeEEEEEECCCCCCEEEEEEecccCCCCcCcEEEEc-----cCCEEEEEEC
Confidence            3455556 78899999999999998  8889999994  22111            112222221     1223489999


Q ss_pred             ccCCCCCeEEEEEEEcCCC--ceEEEEEEEEeccccCCCCCccccCCCeeeecCCCeEEEEEEEeeC--CCCeEEEEECC
Q psy7036          75 DVIETDAGLYKVKAKNKMG--EVAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQAD--PAPTVIWSHSG  150 (254)
Q Consensus        75 ~~~~~d~G~Y~C~~~~~~~--~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~--~~~~~~W~~~~  150 (254)
                      +++.+|+|.|+|.+.+..+  .......|.|...  ...+|.+...+.......|+.+.|.|.+.+.  +.+.+.|++++
T Consensus        74 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~--~~~~P~v~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g  151 (211)
T 3tv3_L           74 GLQTDDEAVYYCGSLVGNWDVIFGGGTKLTVLGQ--PKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADS  151 (211)
T ss_dssp             SCCGGGCEEEEEEEEETTTEEEECCCEEEEECCS--CCBCCEEEEECCCHHHHHTTCEEEEEEEEEEBSSCCEEEEEETT
T ss_pred             CCChhHCEEEEEEEecCCCceeECCCceEEEeCC--CCcCCeeEecCCchhhhcCCCeEEEEEeeeecCCCeEEEEEECC
Confidence            9999999999999999876  3444566676521  1134444433333333469999999999885  35789999999


Q ss_pred             EecccCCcc-eEEEcCCC-CceeeEEEEccCCCCCceeEEEEEEcCCCcceEEE
Q psy7036         151 VQVKEDKRH-KFSIDKDG-HSYFASLEIIDVTIEDAGKYKVTAKNELGESNATI  202 (254)
Q Consensus       151 ~~~~~~~~~-~~~~~~~~-~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~  202 (254)
                      ..+...... ......++ +...+.|.|.+...+|.|.|+|.|.|..+...+++
T Consensus       152 ~~l~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~Y~C~v~~~~~~~~~~~  205 (211)
T 3tv3_L          152 SPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTV  205 (211)
T ss_dssp             EEECTTEEECCCEECTTSSEEEEEEEEECHHHHHHSSCEEEEEEETTEEEEEEE
T ss_pred             eecCCCcccCCceECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEECCCCEEeec
Confidence            987642111 11122222 23346799999988999999999999876555443

>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C region, hinge region, immunoglobulin; HET: NAG FUL NDG BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=99.92  E-value=4e-26  Score=179.37  Aligned_cols=237  Identities=11%  Similarity=0.151  Sum_probs=143.7

Q ss_pred             CCeeEeCCCceeecCCCeEEEEEEEeeC-CCC-ceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEE
Q psy7036           8 APSFTQKPQLRQEDEGNRLIFECQLLCN-PKP-DIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYK   85 (254)
Q Consensus         8 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~-~~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~   85 (254)
                      +|.+...+....+.+|+.++|.|.+.|. |.+ .+.|++++..+.........  ..+.....+.|.|.++...| |.|+
T Consensus       119 ~P~i~~~~~~~~~~~G~~v~L~C~~~g~~P~p~~v~W~k~~~~~~~~~~~~~~--~~~~~~~~s~L~i~~~~~~d-g~Y~  195 (434)
T 1igy_B          119 PPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVL--QSDLYTLSSSVTVPSSPRPS-ETVT  195 (434)
T ss_dssp             CCCEEEECCCCCCCCTTEEEEEEEEEEEBSSCCEEEETTTTBCSSEEECCCEE--CSSCEEEEEEEEEETTTTTS-SCCE
T ss_pred             CCeEEEcCCccccCCCCcEEEEEEEeeecCCCeEEEEeeCCcCCCeEecCcee--cCCcEEEEEEEEEcchhcCC-CcEE
Confidence            4554433333346799999999999885 766 99999998753111000000  11222223479999999889 9999


Q ss_pred             EEEEcCCCceEEEEEEEEeccc-------cCCCCCccccCCCeee-ecCCCeEEEEEEEeeCC----CCeEEEEECCEec
Q psy7036          86 VKAKNKMGEVAASINLNFSREQ-------IDGLAPTFLKKPSIRQ-EDDGKRLLFECRIQADP----APTVIWSHSGVQV  153 (254)
Q Consensus        86 C~~~~~~~~~~~~~~l~v~~~~-------~~~~~~~~~~~~~~~~-~~~g~~~~l~C~~~~~~----~~~~~W~~~~~~~  153 (254)
                      |.+.|..+.......+.+....       ....+..+...+.... +..|+.+.|.|.+.+.+    .+.+.|++++..+
T Consensus       196 C~a~n~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~v~~~~p~~~~~v~~G~~~~L~C~~~g~~p~P~~~~i~W~k~~~~~  275 (434)
T 1igy_B          196 CNVAHPASSTKVDKKIVPRDCGCKPCICTVPEVSSVFIFPPKPKDTLLITVTPKVTCVVVDISKDDPEVQFSWFVDNVEV  275 (434)
T ss_dssp             EEEECTTTTCCEEEECCCCCCCCCCCCCCCSSSCCEEEECCCHHHHHSTTSCCEEEEEECCCCSSCCCCCBCBBSSSCCB
T ss_pred             EEEEeCCCCccceeeccCCCCCCccccCCCCcCcEEEEeCCChHHhcccCCCcEEEEEEeccccCCCCeEEEEEeCCccc
Confidence            9999998875444444332100       0001121122222222 77899999999999874    3579999998776


Q ss_pred             ccCCcceEEEcCCC-CceeeEEEEccCCCCCceeEEEEEEcCCCcceEEEEEEEecCCCCCCCCCCCCeeecCCcccccc
Q psy7036         154 KEDKRHKFSIDKDG-HSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSD  232 (254)
Q Consensus       154 ~~~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~  232 (254)
                      ............++ +...+.|.|.++..+|.|.|+|.|.|..+.......+.+...      ...+|.+...+......
T Consensus       276 ~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~v~~~~~------~~~~P~v~~~~~~~~~~  349 (434)
T 1igy_B          276 HTAQTQPREEQFNSTFRVVSALPIMHQDWLNGKEFKCRVNSAAFPAPIEKTISKTKG------KPRAPQVYTIPPPKEQM  349 (434)
T ss_dssp             CCCSCCCCCCCCSSSCCCCCCEECCHHHHHHTCCCBCCBCCSSCSSCCCCCCCCCCS------CCBCCCCEEECCCSSSS
T ss_pred             CCcccCcceeCCCCcEEEEEEEEECHHHccCCCcEEEEEECCCCCCceeEEEeccCC------CCcCCEEEEECCCHHHh
Confidence            43322111111111 122347999999999999999999998886533222322100      11245554444333455


Q ss_pred             CCCCcEEEEEEEecc-CCC-ceeC
Q psy7036         233 DDLNDIVIECRLVGE-PEP-TISW  254 (254)
Q Consensus       233 ~g~~~~~l~C~~~~~-p~p-~~~W  254 (254)
                      .|+ .+.|.|.+.|. |++ .++|
T Consensus       350 ~~~-~~~L~C~~~g~~P~~~~v~W  372 (434)
T 1igy_B          350 AKD-KVSLTCMITDFFPEDITVEW  372 (434)
T ss_dssp             SSS-EEEEEEEEEEEBCSCEEEEE
T ss_pred             cCC-cEEEEEEEEeeECCCeEEEE
Confidence            678 89999999996 433 7888

>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.92  E-value=7.4e-24  Score=154.33  Aligned_cols=220  Identities=11%  Similarity=0.113  Sum_probs=122.3

Q ss_pred             CCCeeEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEE
Q psy7036           7 FAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKV   86 (254)
Q Consensus         7 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C   86 (254)
                      .+|.|...|. ..+.+|++|+|.|.+.+ +.+.+.|||+|..+......    ...........|.|.+++.+|+|.|+|
T Consensus         6 ~kP~i~~~P~-~~V~~G~~VtL~C~~~~-~~~~~~W~k~g~~~~~~~~~----~~~~~~~~~~~L~I~~v~~~DsG~Y~C   79 (257)
T 1b6u_A            6 RKPSLLAHPG-PLVKSEETVILQCWSDV-RFQHFLLHREGKFKDTLHLI----GEHHDGVSKANFSIGPMMQDLAGTYRC   79 (257)
T ss_dssp             CCCEECCBSC-SEEESSCCEEEEEEESS-CCSEEEEEEESTTCEEEEEE----CBCCTTCEEEEEEECSCCTTTCEEEEE
T ss_pred             CCCEEEEcCC-CEecCCCCEEEEEecCC-CCcEEEEEECCCCCCcceee----eeccCCCceEEEEeecCCcccCEEEEE
Confidence            4678887776 57889999999999963 56789999988644321100    000111233479999999999999999


Q ss_pred             EEEcCCC-----ceEEEEEEEEeccccCCCCCccccCCCeeeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcceE
Q psy7036          87 KAKNKMG-----EVAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKF  161 (254)
Q Consensus        87 ~~~~~~~-----~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~  161 (254)
                      .+.+...     .....+.|.|...   ..+|.+...+. ..+.+|+.++|.|.+.+. .+.+.|+|++..+........
T Consensus        80 ~a~~~~~~~~~s~~S~~~~L~V~~~---~~~P~l~~~p~-~~V~~G~~vtL~C~~~~~-~~~~~w~k~g~~~~~~~~~~~  154 (257)
T 1b6u_A           80 YGSVTHSPYQLSAPSDPLDIVITGL---YEKPSLSAQPG-PTVLAGESVTLSCSSRSS-YDMYHLSREGEAHERRFSAGP  154 (257)
T ss_dssp             EEECSSCTTSCCCCCCCEEEEEECS---SCCCEEECSSC-TTCBTTCEEEEEEECSSC-CSEEEEEETTSSCEECCBCBC
T ss_pred             eEeccCCCccccccCCCEEEecccC---CCCcceEccCC-CccCCCCEEEEEEeCCCC-CcEEEEEECCcccCccccccc
Confidence            9986432     2234566777531   12344433333 356789999999998765 468999999876643221110


Q ss_pred             EEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCC-----cceEEEEEEEecCCCCCCCCCCCCeeec-CCccccccCCC
Q psy7036         162 SIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELG-----ESNATISLNFDSDDAPVPGEGTKPVFTE-RPVTKQSDDDL  235 (254)
Q Consensus       162 ~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~-----~~~~~~~~~v~~~~~~~~~~~~~p~~~~-~~~~~~~~~g~  235 (254)
                        ...+ .....|.|.+++  |+|.|+|.+.+...     ..+..+.|.|...          |.+.. .|.......|.
T Consensus       155 --~~~~-~~~~~l~I~~v~--D~G~Y~C~a~~~~~p~~~s~~S~pl~L~V~g~----------p~~~~p~~~~~~~~~g~  219 (257)
T 1b6u_A          155 --KVNG-TFQADFPLGPAT--HGGTYRCFGSFRDSPYEWSNSSDPLLVSVTGN----------PSNSWPSPTEPSSETGN  219 (257)
T ss_dssp             --CSSS-CCBEEEEEEECC--SCEEEEEEEECSSCTTBBCCCCCCEEECCBCC----------C----------------
T ss_pred             --ccCC-ceeEEEEecccc--cCEEEEEEEEcCCCCcccccCCCCEEEEEecc----------CCCCCCCCcccCccCCC
Confidence              0000 112479999998  99999999997532     2244566666642          22221 12222344566


Q ss_pred             CcEEEEEEEeccCCCceeC
Q psy7036         236 NDIVIECRLVGEPEPTISW  254 (254)
Q Consensus       236 ~~~~l~C~~~~~p~p~~~W  254 (254)
                       .+.|.|.+ |.+-+.|.|
T Consensus       220 -~~~l~~~~-~~~~~~~~~  236 (257)
T 1b6u_A          220 -PRHLHAAA-EQKLISEED  236 (257)
T ss_dssp             -------------------
T ss_pred             -eEEEEEEE-cchHHHHHH
Confidence             88898775 444445544

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A

Probab=99.92  E-value=1.1e-24  Score=151.65  Aligned_cols=150  Identities=13%  Similarity=0.224  Sum_probs=108.3

Q ss_pred             eecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEec-cCCCCCeEEEEEEEcCCCceEE
Q psy7036          19 QEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDD-VIETDAGLYKVKAKNKMGEVAA   97 (254)
Q Consensus        19 ~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~-~~~~d~G~Y~C~~~~~~~~~~~   97 (254)
                      .+.+|++++|.|.+.+ + +.++|+|+|..+.....        +      .|.|.+ ++.+|+|.|+|.+.|..|....
T Consensus        10 v~~~G~~v~L~C~~~~-~-~~i~W~k~g~~l~~~~~--------~------~L~I~~~~~~~D~G~Y~C~a~n~~g~~~~   73 (186)
T 1jbj_A           10 VSISGTSVELTCPLDS-D-ENLKWEKNGQELPQKHD--------K------HLVLQDFSEVEDSGYYVCYTPASNKNTYL   73 (186)
T ss_dssp             EEEETTEEEEECSSCC-C-TTCEEEETTEEECSCCC--------S------EEEEESCCTTTSCEEEEEECSSCCCCCCE
T ss_pred             EEeCCcEEEEEEeCCC-C-CceEEEECCEECCCCCC--------C------EEEECCCCccccCEEEEEEEEeCCCcEEE
Confidence            4578999999999986 3 35999999998865411        1      699999 9999999999999998887555


Q ss_pred             EEEEEEeccccCC------------CCCccccC----CCe---eeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCc
Q psy7036          98 SINLNFSREQIDG------------LAPTFLKK----PSI---RQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKR  158 (254)
Q Consensus        98 ~~~l~v~~~~~~~------------~~~~~~~~----~~~---~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~  158 (254)
                      .+.+.|.......            .++.+...    ...   ..+..|+.+.|.|.+   |.|.+.|+|++..+.....
T Consensus        74 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~l~C~~---p~p~i~W~k~g~~i~~~~~  150 (186)
T 1jbj_A           74 YLKARVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGSRGDGSVLLTCGL---TDKTIKWLKDGSIISPLNA  150 (186)
T ss_dssp             EECCCCCSCCCCCCCCCCCCCCSCCSSSTTCCSCCCCSSCCEECCCSSSCEEEEECSS---SCSCEEEEETTEECCCSSC
T ss_pred             EEEEEEecccccccccccccccccCCccccccccccccccccceecCCCCeEEEEeeC---CCCeEEEEECCEECcccCC
Confidence            5555543211100            00100000    001   123489999999998   7889999999998763321


Q ss_pred             ceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcc
Q psy7036         159 HKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGES  198 (254)
Q Consensus       159 ~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~  198 (254)
                            ..     ..|.|.++..+|+|.|+|.|.|..|..
T Consensus       151 ------~~-----~~L~i~~v~~~D~G~Y~C~a~N~~g~~  179 (186)
T 1jbj_A          151 ------TK-----NTWNLGNNAKDPRGTYQCQGAKETSNP  179 (186)
T ss_dssp             ------CS-----SCCEEEETTSCCEEEEEEEESSCEEEE
T ss_pred             ------Cc-----ceEEECCCCcCcCEEEEEEEEcCcCCc
Confidence                  11     279999999999999999999987765

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A

Probab=99.92  E-value=5e-24  Score=153.50  Aligned_cols=175  Identities=15%  Similarity=0.232  Sum_probs=120.4

Q ss_pred             eCCCceeecCCCeEEEEEEEeeCCC-CceEEEeCCEE-----ee----eCCcceEEEe----------ecCCcceEEEEE
Q psy7036          13 QKPQLRQEDEGNRLIFECQLLCNPK-PDIVWFRGETQ-----LS----EDTRTVMKTT----------PIGTNKYLVALE   72 (254)
Q Consensus        13 ~~~~~~~v~~g~~v~l~C~~~~~~~-~~v~W~~~~~~-----~~----~~~~~~~~~~----------~~~~~~~~~~l~   72 (254)
                      ..|....+.+|+++.|.|.+.+.+. +.+.|++++..     +.    ....+.-+..          ... .   ..|.
T Consensus         5 ~~p~~~~v~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~-~---~~L~   80 (231)
T 2pet_A            5 SVPPLVEVMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRSPPYQLDS-Q---GRLV   80 (231)
T ss_dssp             CCCSEEEEETTCCEEECCCCBSCCSEEEEEEEEECTTCCCCEEEEEEEETTEEEEEECCCSCCSSCCEECT-T---CCEE
T ss_pred             cCCCcEEEEcCCCEEEecccCCCCCceEEEEEEeCCCceeEEEEeccccCCccccccccccccccccccCC-C---ceEE
Confidence            4566778999999999999988774 89999975432     11    1111111111          111 1   1499


Q ss_pred             EeccCCCCCeEEEEEEEcCC-CceEEEEEEEEeccccCCCCCccccCCCeeeecCCCeE-EEEEEE-eeCCCCeEEEEEC
Q psy7036          73 LDDVIETDAGLYKVKAKNKM-GEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRL-LFECRI-QADPAPTVIWSHS  149 (254)
Q Consensus        73 i~~~~~~d~G~Y~C~~~~~~-~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~-~l~C~~-~~~~~~~~~W~~~  149 (254)
                      |.+++..|+|.|+|.+.+.. +.....+.|.|...+   ..|.+...+....+..|+.+ .|.|.+ .+.|.+.+.|+++
T Consensus        81 i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~p---~~~~~~~~~~~~~~~~g~~~~~l~C~~~~~~p~p~i~W~~~  157 (231)
T 2pet_A           81 LAEAQVGDERDYVCVVRAGAAGTAEATARLNVFAKP---EATEVSPNKGTLSVMEDSAQEIATCNSRNGNPAPKITWYRN  157 (231)
T ss_dssp             ESSCCGGGCEEEEEEEECGGGCEEEEEEEEEEEBCC---CCCEEEECCSSCCTTCCSEEEEEEEEEEEEBSCCEEEEEET
T ss_pred             EcccCcccCceEEEEEEecCCCceEEEEEEEEEecC---CCcEEecCCcceeecCCCceEEEEEEeECcccCCEEEEEEC
Confidence            99999999999999999887 667778888886422   22444444445556688887 999999 8899999999999


Q ss_pred             CEecccCC----cceEEE----cCCC-CceeeEEEEccCCCCCceeEEEEEEcC
Q psy7036         150 GVQVKEDK----RHKFSI----DKDG-HSYFASLEIIDVTIEDAGKYKVTAKNE  194 (254)
Q Consensus       150 ~~~~~~~~----~~~~~~----~~~~-~~~~~~l~i~~~~~~d~G~y~C~~~~~  194 (254)
                      +..+....    ...+..    ..++ +...+.|.|.....+|.|.|+|.|.|.
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~L~i~~~~~dd~g~Y~C~a~n~  211 (231)
T 2pet_A          158 GQRLEVPVEMNPEGYMTSRTVREASGLLSLTSTLYLRLRKDDRDASFHCAAHYS  211 (231)
T ss_dssp             TEECCCCSSCCSSEEEEEEEEECTTSCEEEEEEEEEECCGGGGGCEEEEEEEEE
T ss_pred             CccCccccccccceeecceeEecCCCeEEEEEEEEEecchhhCCceEEEEEEcC
Confidence            99886554    222111    1111 122356888766666799999999995

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*

Probab=99.92  E-value=8.3e-25  Score=167.15  Aligned_cols=184  Identities=17%  Similarity=0.282  Sum_probs=105.9

Q ss_pred             CCceeecCCCeEEEEEEE-----eeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEE
Q psy7036          15 PQLRQEDEGNRLIFECQL-----LCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAK   89 (254)
Q Consensus        15 ~~~~~v~~g~~v~l~C~~-----~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~   89 (254)
                      +....+.+|+.+.|.|.+     .+.|.+.++|+|++..+.....  +...  +.     .|.|.+++.+|+|.|+|.+.
T Consensus       127 ~~~~~~~~g~~~~l~C~~~~~~~~g~p~~~v~W~k~~~~l~~~~~--~~~~--~~-----~L~i~~v~~~d~G~Y~C~a~  197 (349)
T 4dep_C          127 PVHKLYIEYGIQRITCPNVDGYFPSSVKPTITWYMGCYKIQNFNN--VIPE--GM-----NLSFLIALISNNGNYTCVVT  197 (349)
T ss_dssp             CEEEEETTCSEEEEECCSCTTSSCTTSCCEEEEEETTEECCSCSS--EEEE--TT-----EEEEESCCGGGCEEEEEEEE
T ss_pred             CcceeeecCccEEEEcCCCcccccCCCCceEEEeeCCEECCCccc--eeec--CC-----EEEEeeeeecCCcEEEEEEE
Confidence            445578899999999985     6678999999999998865422  2211  11     79999999999999999999


Q ss_pred             cCC-Cce---EEEEEEEEeccccCCCCCccccCCCe--eeecCCCeEEEEEEEe----eCCCCeEEEEECCEeccc-CCc
Q psy7036          90 NKM-GEV---AASINLNFSREQIDGLAPTFLKKPSI--RQEDDGKRLLFECRIQ----ADPAPTVIWSHSGVQVKE-DKR  158 (254)
Q Consensus        90 ~~~-~~~---~~~~~l~v~~~~~~~~~~~~~~~~~~--~~~~~g~~~~l~C~~~----~~~~~~~~W~~~~~~~~~-~~~  158 (254)
                      |.. +..   ...+.|.|........+|.+......  ..+..|+.+.|.|.+.    +.|.+.+.|++++..+.. ...
T Consensus       198 n~~~g~~~~~~~~~~l~v~~~~~~~~~p~i~~~~~~~~~~v~~G~~v~l~C~~~~~~~g~p~p~v~W~~~g~~l~~~~~~  277 (349)
T 4dep_C          198 YPENGRTFHLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEELLIPCTVYFSFLMDSRNEVWWTIDGKKPDDITID  277 (349)
T ss_dssp             EEETTEEEEEEEEEEEEEECCGGGCCSCEEC----------------CCCEEEEECCCTTCCCEEEEESSCC--------
T ss_pred             EeeCCEEEEEEEEEEEEEEccCCCCCCCeEecCCCceeEEEecCCcEEEEEEEEEccCCCCCCEEEEEECCEEccccCCc
Confidence            976 443   45666776543222224554433322  2677899999999998    468899999999987754 111


Q ss_pred             ceEE-----EcCCCCceeeEEEEccCCCCCc-eeEEEEEEcCCCcceEEEEEEEe
Q psy7036         159 HKFS-----IDKDGHSYFASLEIIDVTIEDA-GKYKVTAKNELGESNATISLNFD  207 (254)
Q Consensus       159 ~~~~-----~~~~~~~~~~~l~i~~~~~~d~-G~y~C~~~~~~~~~~~~~~~~v~  207 (254)
                      ....     ...++....+.|.|.++..+|. |.|+|.|.|..|.....+.|.|.
T Consensus       278 ~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~~G~~~~~~~l~v~  332 (349)
T 4dep_C          278 VTINESISHSRTEDETRTQILSIKKVTSEDLKRSYVCHARSAKGEVAKAAKVKQK  332 (349)
T ss_dssp             CCCCEEEECCTTCCEEEEECC-------------CEEEEECSSCEEEEECC----
T ss_pred             cccccceeeecCCCcEEEEEEEEeeccHHHcCCcEEEEEEcCCCcEEEEEEEeee
Confidence            1110     0012222345699999999999 99999999999998888877775

>1c1e_H Catalytic antibody 1E9 (heavy chain); diels-alder, immunoglobulin, immune system; HET: ENH; 1.90A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1dbb_H* 1dba_H* 1dbj_H* 1dbk_H* 1dbm_H* 2dbl_H* 3ojd_B 1jgl_H* 1jhk_H 1ghf_H 1tet_H* 3e8u_H 1fj1_B 1cl7_H

Probab=99.92  E-value=7.3e-24  Score=151.47  Aligned_cols=185  Identities=10%  Similarity=0.162  Sum_probs=117.8

Q ss_pred             eCCCceeecCCCeEEEEEEEeeCC--CCceEEEeC--CEEee-----------------eCCcceEEEeecCCcceEEEE
Q psy7036          13 QKPQLRQEDEGNRLIFECQLLCNP--KPDIVWFRG--ETQLS-----------------EDTRTVMKTTPIGTNKYLVAL   71 (254)
Q Consensus        13 ~~~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~--~~~~~-----------------~~~~~~~~~~~~~~~~~~~~l   71 (254)
                      ..|....+.+|++++|.|.+.+.+  .+.+.|||+  +..+.                 ...++.+....   .....+|
T Consensus         5 ~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~---~~~~~~L   81 (219)
T 1c1e_H            5 VQSGPELKKPGETVKISCKASGYMFTNYGMNWVKQAPGKALKLMGWINPYTGESTFADDFKGRFAFFLET---SATTAYL   81 (219)
T ss_dssp             EECCCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECSSSCCEEECGGGCSSEEEEEEG---GGTEEEE
T ss_pred             eCCCCeEecCCCcEEEEEEEeCcccccceEEEEEeCCCCCcEEEEEEecCCCceEeCcccCCcEEEEEec---CCCEEEE
Confidence            346677899999999999998765  678999986  33221                 01222222111   1123489


Q ss_pred             EEeccCCCCCeEEEEEEEcCCCc----eEEEEEEEEeccccCCCCCccccCCCeeeecCCCeEEEEEEEee-CCCC-eEE
Q psy7036          72 ELDDVIETDAGLYKVKAKNKMGE----VAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQA-DPAP-TVI  145 (254)
Q Consensus        72 ~i~~~~~~d~G~Y~C~~~~~~~~----~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~~~~-~~~  145 (254)
                      .|.+++.+|+|.|+|.+.+..+.    ......|.|...  ...+|.+........+..|+.+.|.|.+.+ .|.| .+.
T Consensus        82 ~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~--~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~  159 (219)
T 1c1e_H           82 QINNLKNEDMATYFCARGTTIVRAMDYWGQGTSLTVSSA--KTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVT  159 (219)
T ss_dssp             EECSCCGGGCEEEEEEEEETTTTEEEEECCCEEEEECCC--CCBCCEEEEECCCSSSCCSSEEEEEEEEEEEBSSCCEEE
T ss_pred             EECCCCcccCEEEEEEEeccCcccceeecCceEEEEecC--CCCCCeEEEecCccccccCCeEEEEEEcccccCCCeEEE
Confidence            99999999999999999987632    123456666531  112233332222224567999999999998 8888 999


Q ss_pred             EEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcceEEEEE
Q psy7036         146 WSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISL  204 (254)
Q Consensus       146 W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~  204 (254)
                      |++++..+........ ...+.+...+.|.|..... |.|.|+|.|.|..+.......|
T Consensus       160 W~~~g~~~~~~~~~~~-~~~~~~~~~s~L~i~~~~~-d~g~Y~C~a~n~~~~~~~~~~i  216 (219)
T 1c1e_H          160 WNSGSLSSGVHTFPAV-LQSDLYTLSSSVTVPSSPR-PSETVTCNVAHPASSTKVDKKI  216 (219)
T ss_dssp             EGGGTBCTTEEECCCE-ESSSCEEEEEEEEEESSST-TTSCCEEEEEEGGGTEEEEEEC
T ss_pred             EEeCCcccceEecCCc-ccCCeEEEEEEEEEecccC-CCCEEEEEEEeCCCCccEEEec
Confidence            9999876532111111 1112222345788844444 5699999999988766555443

>4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus}

Probab=99.92  E-value=1.3e-24  Score=155.58  Aligned_cols=186  Identities=17%  Similarity=0.255  Sum_probs=120.9

Q ss_pred             CceeecCCCeEEEEEEEeeCCC-----CceEEEeCCEEe-----------eeCCcceEEEeecCCcceEEEEEEeccCCC
Q psy7036          16 QLRQEDEGNRLIFECQLLCNPK-----PDIVWFRGETQL-----------SEDTRTVMKTTPIGTNKYLVALELDDVIET   79 (254)
Q Consensus        16 ~~~~v~~g~~v~l~C~~~~~~~-----~~v~W~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~   79 (254)
                      +.+.+.+|++++|.|.+.+.+.     +.+.|++++...           ......+.............+|.|.+++..
T Consensus         3 ~~v~~~~G~~v~L~C~~~~~~~~~~~~~~v~W~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v~~~   82 (222)
T 4i0k_A            3 DPVVALVDTDATLRCSFSPEPGFSLAQLNLIWQLTDTKQLVHSFTEGRDQGSAYSNRTALFPDLLVQGNASLRLQRVRVT   82 (222)
T ss_dssp             CCCCCCTTSCEEECCBCCCCTTCCTTTEEEEEEETTTCCEEEEEETTEEEEESSCSCEECCTTTGGGTBCCEEECSCCGG
T ss_pred             CCEEEECCCCeEEEEEecCCCCCCCCceEEEEEECCCccEEEEEcCCcccccceeCcEEEecccccCCeEEEEECCcccc
Confidence            3457889999999999977643     689999986332           011111222111111112347999999999


Q ss_pred             CCeEEEEEEEcCCCceEEEEEEEEeccccCCCCCccccCCCeeeecCCCeEEEEEEE-eeCCCCeEEEEEC-CEecccCC
Q psy7036          80 DAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRI-QADPAPTVIWSHS-GVQVKEDK  157 (254)
Q Consensus        80 d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~~~~~~~~W~~~-~~~~~~~~  157 (254)
                      |+|.|+|.+.+.. .....+.|.|...   ...|.+...+ ...+..|+.+.|.|.+ .+.|.+.+.|+++ +..+....
T Consensus        83 D~G~Y~C~~~~~~-~~~~~~~l~V~~~---~~~p~i~~~~-~~~v~~G~~~~l~C~~~~g~P~~~v~W~~~~~~~~~~~~  157 (222)
T 4i0k_A           83 DEGSYTCFVSIQD-FDSAAVSLQVAAP---YSKPSMTLEP-NKDLRPGNMVTITCSSYQGYPEAEVFWKDGQGVPLTGNV  157 (222)
T ss_dssp             GCSCEEEEEEECC-CCCCCCCCCCCBC---CCCCEEECCC------CCSEEEEEEEEEEEBSCCEEEEECTTSCBCCSEE
T ss_pred             cCEEEEEEEEeCC-CceEEEEEEEEcC---CCCCcEEeCC-CceecCCceEEEEEecccccCCCeEEEEcCCCccCCCCc
Confidence            9999999999753 3344455555421   1223333332 3356689999999998 7889999999994 44443222


Q ss_pred             cceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcceEEEEEEEec
Q psy7036         158 RHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFDS  208 (254)
Q Consensus       158 ~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~v~~  208 (254)
                      ........++  ..+.|.|.++..+|.|.|+|.|.|..|....++.|.|..
T Consensus       158 ~~~~~~~~~~--~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~  206 (222)
T 4i0k_A          158 TTSQMANERG--LFDVHSVLRVVLGANGTYSCLVRNPVLQQDAHGSVTITG  206 (222)
T ss_dssp             EEEEEECTTS--CEEEEEEEEEECCTTCEEEEEEEETTTTEEEEEEEECCC
T ss_pred             ceeEEcCCCC--eEEEEEEEEEEeCCCCEEEEEEECCCCCCceEEEEEEeC
Confidence            2122222222  234688999999999999999999999999888888864

>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L* 1mfb_L* ...

Probab=99.92  E-value=1.3e-23  Score=149.44  Aligned_cols=183  Identities=16%  Similarity=0.151  Sum_probs=120.3

Q ss_pred             eeEeCCCceeecCCCeEEEEEEEeeCC---CCceEEEeCC--EEe---e---------eCCcceEEEeecCCcceEEEEE
Q psy7036          10 SFTQKPQLRQEDEGNRLIFECQLLCNP---KPDIVWFRGE--TQL---S---------EDTRTVMKTTPIGTNKYLVALE   72 (254)
Q Consensus        10 ~~~~~~~~~~v~~g~~v~l~C~~~~~~---~~~v~W~~~~--~~~---~---------~~~~~~~~~~~~~~~~~~~~l~   72 (254)
                      .+++ |....+.+|++++|.|.+.+.+   .+.+.|+|++  ..+   .         ...++...  .   ....+.|.
T Consensus         3 ~v~~-p~~~~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~--~---~~~~~~L~   76 (212)
T 1q0x_L            3 VVTQ-ESALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGS--L---IGDKAALT   76 (212)
T ss_dssp             CEEE-CSEEEECTTCCEEEEEEESSSCCCGGGCCEEEEEETTTEEEEEEETTTEECTTCCTTEEEE--E---ETTEEEEE
T ss_pred             eEEC-CCeEeecCCCCEEEEEEecccccCCCCeEEEEEeCCCCCceEEEEcCcccCCcccccEEEE--e---eCCEEEEE
Confidence            3556 8888999999999999998766   4789999852  222   1         01222221  1   12234899


Q ss_pred             EeccCCCCCeEEEEEEEcCCCce-EEEEEEEEeccccCCCCCccccCCCeeeecCCCeEEEEEEEeeCCCC--eEEEEEC
Q psy7036          73 LDDVIETDAGLYKVKAKNKMGEV-AASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQADPAP--TVIWSHS  149 (254)
Q Consensus        73 i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~--~~~W~~~  149 (254)
                      |.+++.+|+|.|.|.+.+..+.. .....|.|...  ...+|.+...........|+.+.|.|.+.+.+++  .+.|+++
T Consensus        77 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~--~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~  154 (212)
T 1q0x_L           77 ITGAQTEDEAIYFCALWSNNKLVFGGGTKLTVLGQ--PKSSPTVTLFPPSSEELSTAKATLVCTITDFYPGVVTVDWKVD  154 (212)
T ss_dssp             ESSCCGGGCEEEEEEEECSSCEEECCCEEEEECCS--CCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEET
T ss_pred             ECCCCccCCEEEEEEEecCchhhcCCCeEEEEecC--CCCCCeeEEeCCCHHHccCCcEEEEEEEEEEeCCCeEEEEEEC
Confidence            99999999999999999876532 22345555321  1134444332222233468899999999885433  8999999


Q ss_pred             CEecccCCcc-eEEEcCCCC-ceeeEEEEccCCCCCceeEEEEEEcCCCcceE
Q psy7036         150 GVQVKEDKRH-KFSIDKDGH-SYFASLEIIDVTIEDAGKYKVTAKNELGESNA  200 (254)
Q Consensus       150 ~~~~~~~~~~-~~~~~~~~~-~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~  200 (254)
                      +..+...... ......++. ...+.|.|.....+|.|.|+|.|.|......+
T Consensus       155 g~~l~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~~  207 (212)
T 1q0x_L          155 GTPVTAGMETTQPSKQSNNKYMASSYLTLTARAWERHSSYSCQVTHEGHSSNK  207 (212)
T ss_dssp             TEEECTTEEECCCEECTTSCEEEEEEEEEEHHHHTTCCEEEEEEEETTEEEEE
T ss_pred             CEeCCCCeecCCceeCCCCCEEEEEEEEEcHHHccCCCcEEEEEEeCCcceee
Confidence            9887644211 112222222 33457999999999999999999997655433

>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A

Probab=99.92  E-value=3.2e-23  Score=164.64  Aligned_cols=225  Identities=13%  Similarity=0.163  Sum_probs=135.4

Q ss_pred             ecCCCeEEEEEEEeeC-CC-C-ceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcCCCce-
Q psy7036          20 EDEGNRLIFECQLLCN-PK-P-DIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGEV-   95 (254)
Q Consensus        20 v~~g~~v~l~C~~~~~-~~-~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~-   95 (254)
                      +.+|+.++|.|.+.|. |. + .|+|++++...............++.....+.|.|.++...|+|.|+|.+.|..+.. 
T Consensus       138 ~~~g~~v~L~C~~~g~~P~~p~~v~W~~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~  217 (475)
T 1iga_A          138 TQPDGNVVIACLVQGFFPQEPLSVTWSESGQGVTARNFPPSQDASGDLYTTSSQLTLPATQCLAGKSVTCHVKHYTNPSQ  217 (475)
T ss_pred             cCCCCeEEEEEEEeeecCCCceEEEEcCCCcccceEeCCceecCCCCcEEEEEEEEechhHcCCCceEEEEEEECCCCce
Confidence            3689999999999886 55 4 999999875321110000000111222233468899999999999999999987632 


Q ss_pred             EEEEEEEEeccc-----------cCC-CCCcc-ccCCCeeeecCCCeEEEEEEEeeCCC---CeEEEEECCEecccCCcc
Q psy7036          96 AASINLNFSREQ-----------IDG-LAPTF-LKKPSIRQEDDGKRLLFECRIQADPA---PTVIWSHSGVQVKEDKRH  159 (254)
Q Consensus        96 ~~~~~l~v~~~~-----------~~~-~~~~~-~~~~~~~~~~~g~~~~l~C~~~~~~~---~~~~W~~~~~~~~~~~~~  159 (254)
                      ...+.+.|....           ... .+|.+ ...+....+..|+.+.|.|.+.+.++   +.+.|  ++..+......
T Consensus       218 ~~~v~l~V~~~~~~~~~~~~~~~~~~~~~p~v~~~~p~~~~~~~G~~v~L~C~~~g~~p~~~~~i~W--~~~~~~~~~~~  295 (475)
T 1iga_A          218 DVTVPCPVPSTPPTPSPSTPPTPSPSCCHPRLSLHRPALEDLLLGSEANLTCTLTGLRDASGVTFTW--TPSSGKSAVQG  295 (475)
T ss_pred             eeeEecccccCcccccccccccCCCCCCCcEEEEcCCChHHhccCCceEEEEEEEcccCCCceEEEE--CCCCcCCcccc
Confidence            223332231100           000 12322 22222223578999999999988754   58999  44333221111


Q ss_pred             eEEEcCCC-CceeeEEEEccCCCCCceeEEEEEEcCCCcceEEEEEEEecCCCCCCCCCCCCeeecCC-ccccccCCCCc
Q psy7036         160 KFSIDKDG-HSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERP-VTKQSDDDLND  237 (254)
Q Consensus       160 ~~~~~~~~-~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~p~~~~~~-~~~~~~~g~~~  237 (254)
                      ......++ +...+.|.|.++..+|.|.|+|.|.|..+.......|.+..       ...+|.+...+ ....+.+|+ .
T Consensus       296 ~~~~~~~g~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~~~~~~~~~v~~~~-------~~~~P~v~~~~~~~~~v~~g~-~  367 (475)
T 1iga_A          296 PPERDLCGCYSVSSVLPGCAEPWNHGKTFTCTAAYPESKTPLTATLSKSG-------NTFRPEVHLLPPPSEELALNE-L  367 (475)
T ss_pred             CceECCCCCEEEEEEEEEchHHhccCCcEEEEEEcCCCCCceEEEeecCC-------CCCCCeEEEECCChHHhccCC-c
Confidence            11111122 22345799999999999999999999988765444443311       12355554433 333456777 8


Q ss_pred             EEEEEEEecc-CC-CceeC
Q psy7036         238 IVIECRLVGE-PE-PTISW  254 (254)
Q Consensus       238 ~~l~C~~~~~-p~-p~~~W  254 (254)
                      +.|.|.+.|. |+ +.++|
T Consensus       368 ~~L~C~~~g~~P~~~~v~W  386 (475)
T 1iga_A          368 VTLTCLARGFSPKDVLVRW  386 (475)
T ss_pred             eEEEEEEeeeECCCCEEEE
Confidence            9999999996 43 47888

>3sob_L Antibody light chain; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L*

Probab=99.92  E-value=5.4e-24  Score=153.93  Aligned_cols=190  Identities=16%  Similarity=0.206  Sum_probs=126.7

Q ss_pred             CCeeEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeCC-----EEee---------eCCcceEEEeecCCcceEEEEEE
Q psy7036           8 APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGE-----TQLS---------EDTRTVMKTTPIGTNKYLVALEL   73 (254)
Q Consensus         8 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~-----~~~~---------~~~~~~~~~~~~~~~~~~~~l~i   73 (254)
                      .+.+...|....+.+|++++|.|.+.+.+.+.+.|||++     ..+.         ...++...  .   .....+|.|
T Consensus        24 ~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~--~---~~~~~~L~I   98 (237)
T 3sob_L           24 DIQMTQSPSSLSASVGDRVTITCRASQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGS--G---SGTDFTLTI   98 (237)
T ss_dssp             CCCEEEECSEEEEETTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEE--E---ETTEEEEEE
T ss_pred             cceEEeCCCeEEEeCCCcEEEEEecCCCCCceEEEEEECCCCCCEEEEEeccccCCCCCCcEEEE--c---CCCEEEEEE
Confidence            345677788889999999999999988888899999842     1111         01222222  1   112348999


Q ss_pred             eccCCCCCeEEEEEEEcCCCc-eEEEEEEEEeccccCCCCCccccCCCeeeecCCCeEEEEEEEeeC-C-CCeEEEEECC
Q psy7036          74 DDVIETDAGLYKVKAKNKMGE-VAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQAD-P-APTVIWSHSG  150 (254)
Q Consensus        74 ~~~~~~d~G~Y~C~~~~~~~~-~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~-~~~~~W~~~~  150 (254)
                      .+++.+|+|.|+|.+.+..+. ......+.|..   ...+|.+...........|+.+.|.|.+.+. | .+.+.|++++
T Consensus        99 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~---~~~~p~v~~~~~~~~~~~g~~v~l~C~~~~~~p~~~~v~W~k~g  175 (237)
T 3sob_L           99 SSLQPEDFATYYCQQSYTTPPTFGQGTKVEIKR---TVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDN  175 (237)
T ss_dssp             SSCCGGGCEEEEEEECSSSSCEECCCEEEEEEC---CCBCCEEEEECCCHHHHHHTEEEEEEEEEEEBSSCCEEEEEETT
T ss_pred             CCCChhhCeEEEEeeccCCceEEcCcEEEEEec---CCCCCceEEeCCChhhccCCceEEEEEEcccCCCceEEEEEECC
Confidence            999999999999999876653 22334556542   1234444333332333458889999999884 4 5799999999


Q ss_pred             EecccCC--cceEEEcCCCC-ceeeEEEEccCCCCCceeEEEEEEcCCCcceEEEEEE
Q psy7036         151 VQVKEDK--RHKFSIDKDGH-SYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLN  205 (254)
Q Consensus       151 ~~~~~~~--~~~~~~~~~~~-~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~  205 (254)
                      ..+....  ........++. ...+.|.|.....+|.|.|+|.|.|..........+.
T Consensus       176 ~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~  233 (237)
T 3sob_L          176 ALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFN  233 (237)
T ss_dssp             EECCSSEEEEECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCSSCEEEEEE
T ss_pred             CCCCCceeecccccccCCCcEEEEEEEEEcHHHccCCCcEEEEEeeCCCCCceeeeee
Confidence            9876431  11111112222 3346789999999999999999999887665554443

>2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin, glycosylation, immune system; HET: NAG FUC MAN GAL; 2.13A {Mus musculus}

Probab=99.91  E-value=2.8e-24  Score=153.40  Aligned_cols=192  Identities=15%  Similarity=0.169  Sum_probs=119.6

Q ss_pred             CCCCeeEeCCCcee--ecCCCeEEEEEEEeeC---C-CCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCC
Q psy7036           6 DFAPSFTQKPQLRQ--EDEGNRLIFECQLLCN---P-KPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIET   79 (254)
Q Consensus         6 ~~~p~~~~~~~~~~--v~~g~~v~l~C~~~~~---~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~   79 (254)
                      ...|.+...|....  +.+|++++|.|.+.+.   + .+.|+|+|++..+.............+.....+.|.|.+++..
T Consensus         7 ~~~p~v~~~pp~~~~~v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~   86 (218)
T 2rgs_A            7 EGGPSVFIFPPNIKDVLMISLTPKVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTIRVVSTLPIQHQDWM   86 (218)
T ss_dssp             --CCEEEEECCCHHHHHCTTSCCEEEEEEEEECTTSCCEEEEEEETTEEECCCEEEEEEETTTTEEEEEEEEECCHHHHH
T ss_pred             CCCCEEEEECcCHHHhhccCCCeeEEEEEcCCccCCCceEEEEEECCccccCcccccccccCCCeEEEEEEEEEcHHHcC
Confidence            34666655555544  8899999999999876   3 3789999999876533211111111111123457999999999


Q ss_pred             CCeEEEEEEEcCCCceEEEEEEEEeccccCCCCCccccCCCeeeecCCCeEEEEEEEee-CCCC-eEEEEECCEecccCC
Q psy7036          80 DAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQA-DPAP-TVIWSHSGVQVKEDK  157 (254)
Q Consensus        80 d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~~~~-~~~W~~~~~~~~~~~  157 (254)
                      |+|.|+|.+.|..+.......+...  .....+|.+...+.......|+.+.|.|.+.| .|.+ .+.|++++..+....
T Consensus        87 D~g~Y~C~~~~~~~~~~~~~~v~~~--~~~~~~P~v~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~~~~~~  164 (218)
T 2rgs_A           87 SGKEFKCKVNNKDLPSPIERTISKI--KGLVRAPQVYILPPPAEQLSRKDVSLTCLVVGFNPGDISVEWTSNGHTEENYK  164 (218)
T ss_dssp             TTCCEEEEEEETTCSSCEEEEECCC--CCCCBCCEEEEECCCGGGTTSSEEEEEEEEEEEBSSCCEEEEEETTEEECCEE
T ss_pred             CCCeEEEEEECCcCCCcceEEEeec--CCCCCCCEEEEECCChHHhcCCceEEEEEEEeeeCCCcEEEEEECCEeccCce
Confidence            9999999999887643122222110  01123444432222222235899999999998 5665 899999998874322


Q ss_pred             cceEEEcCCCC-ceeeEEEEccCCCCCceeEEEEEEcCCCcce
Q psy7036         158 RHKFSIDKDGH-SYFASLEIIDVTIEDAGKYKVTAKNELGESN  199 (254)
Q Consensus       158 ~~~~~~~~~~~-~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~  199 (254)
                      ........++. ...+.|.|.....+|.|.|+|.|.|......
T Consensus       165 ~~~~~~~~~gt~~~~s~l~v~~~~~~d~g~YtC~a~n~~l~~~  207 (218)
T 2rgs_A          165 DTAPVLDSDGSYFIYSKLNMKTSKWEKTDSFSCNVRHEGLKNY  207 (218)
T ss_dssp             ECCCEECTTSCEEEEEEEEEEHHHHHHCSCEEEEEECTTSGGG
T ss_pred             ecccEECCCCCEEEEEEEEECHHHcCCCCeEEEEEEcCCCCCc
Confidence            22222233332 3344566766666679999999999876543

>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus}

Probab=99.91  E-value=7.1e-24  Score=154.96  Aligned_cols=188  Identities=18%  Similarity=0.193  Sum_probs=123.2

Q ss_pred             CCeeEeCCCceeecCCCeEEEEEEEeeCC-----CCceEEEeCC--EEee----------e--CCcceEEEeecCCcceE
Q psy7036           8 APSFTQKPQLRQEDEGNRLIFECQLLCNP-----KPDIVWFRGE--TQLS----------E--DTRTVMKTTPIGTNKYL   68 (254)
Q Consensus         8 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~-----~~~v~W~~~~--~~~~----------~--~~~~~~~~~~~~~~~~~   68 (254)
                      .|.+...|....+.+|++++|.|.+.+.+     .+.+.|+|++  ..+.          .  ..++...  .   ....
T Consensus        38 ~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~--~---~~~~  112 (254)
T 2c1o_A           38 ELVMTQSPLTLSVTIGQPASISCKSSQSLLYSNGKTYLNWLLQRPGQSPKRLIYLVSKLDSGDPDRFTGS--G---SGTD  112 (254)
T ss_dssp             CCCEEEECSEEEECTTSCEEEEEEESSCCBCSSSCBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEE--E---ETTE
T ss_pred             ceeEEeCCceEEecCCCcEEEEeeccCcccccCCCCceEEEEeCCCCCceEEEEeccccCCCccceEEEe--c---CCCE
Confidence            56777778889999999999999998876     4899999843  2110          1  1222221  1   1123


Q ss_pred             EEEEEeccCCCCCeEEEEEEEcCCCceE-EEEEEEEeccccCCCCCccccCCCeeeecCCCeEEEEEEEeeC-CC-CeEE
Q psy7036          69 VALELDDVIETDAGLYKVKAKNKMGEVA-ASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQAD-PA-PTVI  145 (254)
Q Consensus        69 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~-~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~-~~~~  145 (254)
                      +.|.|.+++.+|+|.|+|.+.|..+... ....+.|...   ..+|.+...........|+.+.|.|.+.+. |+ +.+.
T Consensus       113 ~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~l~V~~~---~~~P~v~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~  189 (254)
T 2c1o_A          113 FTLKISRVEAEDLGIYYCVQGSHFPPTFGAGTKLELKRA---DAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVK  189 (254)
T ss_dssp             EEEEESSCCGGGCSEEEEEECSSSSCEEBCCEEEEECCC---CBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEE
T ss_pred             EEEEECcCCcccCEEEEEEEEcCcceEecCCEEEEECCC---CCCCeeEeecCChhhccCCcEEEEEEEecccCCCcEEE
Confidence            4799999999999999999998765322 2335555421   124444332222223357799999999884 44 4699


Q ss_pred             EEECCEecccC-Cc-ceEEEcCCCC-ceeeEEEEccCCCCCceeEEEEEEcCCCcceEEEE
Q psy7036         146 WSHSGVQVKED-KR-HKFSIDKDGH-SYFASLEIIDVTIEDAGKYKVTAKNELGESNATIS  203 (254)
Q Consensus       146 W~~~~~~~~~~-~~-~~~~~~~~~~-~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~  203 (254)
                      |+|++..+... .. .......++. ...+.|.|.++..+|.|.|+|.|.|..........
T Consensus       190 W~k~g~~l~~~~~~~~~~~~~~~g~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~  250 (254)
T 2c1o_A          190 WKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKS  250 (254)
T ss_dssp             EEESSSEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTTCSSCEEEE
T ss_pred             EEECCCcccCcceeccccccCCCCcEEEEEEEEeccccccCCCeEEEEEEcCCCCCcceEe
Confidence            99999887544 11 1111112221 23468999999999999999999998776544433

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R

Probab=99.91  E-value=2.2e-23  Score=174.76  Aligned_cols=217  Identities=14%  Similarity=0.190  Sum_probs=119.8

Q ss_pred             CCceeecCC--CeEEEEEEEeeCCCCceEEEeC--CEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEc
Q psy7036          15 PQLRQEDEG--NRLIFECQLLCNPKPDIVWFRG--ETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKN   90 (254)
Q Consensus        15 ~~~~~v~~g--~~v~l~C~~~~~~~~~v~W~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~   90 (254)
                      +....+.+|  ++++|.|.+.+ |.+.++|+++  +..+........ .....      .|.|.+++..|+|.|+|.+.+
T Consensus       133 ~~~~~v~~G~~~~v~L~C~~~~-p~~~v~w~~~~~~~~~~~~~~~~~-~~~~~------~l~i~~~~~~d~G~Y~C~~~~  204 (772)
T 3v2a_R          133 HGVVYITENKNKTVVIPCLGSI-SNLNVSLCARYPEKRFVPDGNRIS-WDSKK------GFTIPSYMISYAGMVFCEAKI  204 (772)
T ss_dssp             EEEEEEESSCCCEEEECCCCSC-SSCCEEEEEETTTEEECCCSSSCE-EETTT------EEEEEGGGTTTCSEEEEEEEE
T ss_pred             ceeEEEecCCCCeEEEEccCCC-CCcEEEEEecCCCccccCCCceee-cCCCC------CeEecCCChhhCeEEEEEEEE
Confidence            455678889  89999999975 7789999997  665544332211 11111      699999999999999999997


Q ss_pred             CCCceEE-EEEEEEeccccCCCCCccc-cCCCeeeecCCCeEEEEEEEee--CCCCeEEEEECCEecccCCcceEEEcC-
Q psy7036          91 KMGEVAA-SINLNFSREQIDGLAPTFL-KKPSIRQEDDGKRLLFECRIQA--DPAPTVIWSHSGVQVKEDKRHKFSIDK-  165 (254)
Q Consensus        91 ~~~~~~~-~~~l~v~~~~~~~~~~~~~-~~~~~~~~~~g~~~~l~C~~~~--~~~~~~~W~~~~~~~~~~~~~~~~~~~-  165 (254)
                      ....... ...+.+...    .++.+. .......+..|+.+.|.|.+.+  .+.+.+.|++++..+............ 
T Consensus       205 ~~~~~~s~~~~~~v~~~----~~~~v~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~  280 (772)
T 3v2a_R          205 NDESYQSIMYIVVVVGY----RIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQ  280 (772)
T ss_dssp             TTEEEECCEEEEEEECC----CEEEEEEECCSCEEEETTCCEEEEEEEEECTTCCCEEEEECC--------CEEEEC---
T ss_pred             CCceEEEEEEEEEEecC----ccceeeeCCCCceEEecCCcEEEEEEEecCCCCceeEEEecCCccCCCceeeecccccc
Confidence            5443222 133333211    112222 2233357889999999999987  445689999998775432221111000 


Q ss_pred             ---CCCceeeEEEEccCCCCCceeEEEEEEcCCCcceEEEEEEEecCCCCCCCCCCCCeeec---CCccccccCCCCcEE
Q psy7036         166 ---DGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTE---RPVTKQSDDDLNDIV  239 (254)
Q Consensus       166 ---~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~p~~~~---~~~~~~~~~g~~~~~  239 (254)
                         ......+.|.|.+++.+|+|.|+|.+.|..+.....+.|.|..          +|.+..   .+....+.+|+ .+.
T Consensus       281 ~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~~~~l~V~~----------~p~~~~~~~~~~~~~v~~G~-~v~  349 (772)
T 3v2a_R          281 SGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHE----------KPFVAFGSGMESLVEATVGE-RVR  349 (772)
T ss_dssp             --CCCEEEEEEEEESSCCSTTCSEEEEEEECSSCEEEEEEEEEEEC----------CCC---------------------
T ss_pred             ccccceEEEEEEEECcCCcCCCeEEEEEEEcCCcceeEEEEEEEeC----------CCeeEeccCCCCcEEEcCCC-cEE
Confidence               1223446899999999999999999999988877788888875          222221   22345678898 999


Q ss_pred             EEEEEeccCCCceeC
Q psy7036         240 IECRLVGEPEPTISW  254 (254)
Q Consensus       240 l~C~~~~~p~p~~~W  254 (254)
                      |.|.+.|+|.|.+.|
T Consensus       350 l~C~~~~~p~~~v~W  364 (772)
T 3v2a_R          350 IPAKYLGYPPPEIKW  364 (772)
T ss_dssp             ---------------
T ss_pred             EEEEEeeeCCCeEEE
Confidence            999999999999998

>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse IGG, zinc-finger, DNA-binding, RNA-binding, tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A

Probab=99.91  E-value=7.1e-24  Score=150.15  Aligned_cols=187  Identities=13%  Similarity=0.183  Sum_probs=117.4

Q ss_pred             eeEeCCCcee-ecCCCeEEEEEEEeeCC----CCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEE
Q psy7036          10 SFTQKPQLRQ-EDEGNRLIFECQLLCNP----KPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLY   84 (254)
Q Consensus        10 ~~~~~~~~~~-v~~g~~v~l~C~~~~~~----~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y   84 (254)
                      .+...|.... +.+|++++|.|.+.+.+    ...++|+|++..+.............+.....+.|.|.+++..|+|.|
T Consensus         4 v~~~~P~~~~~v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y   83 (207)
T 2vol_A            4 VFIFPPKPKDVLTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTKPREEQFNSTFRSVSELPIMHQDWLNGKEF   83 (207)
T ss_dssp             EEEECCCHHHHHSTTSCCEEEEEEEEECTTCCCCEEEEEETTEEECCCEEECCCEETTTEEEEEEEEECCHHHHHTTCCE
T ss_pred             EEEeCcChhhhhccCCceEEEEEEeCcccCCCceEEEEEECCccccccccCCCcCcCCCcEEEEEEEEEehhHcCCCCEE
Confidence            3455666544 88999999999998764    348999999977643211000001111112234799999999999999


Q ss_pred             EEEEEcCCCceEEEEEEEEeccccCCCCCccccCCCeeeecCCCeEEEEEEEeeC-CC-CeEEEEECCEecccCCcceEE
Q psy7036          85 KVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQAD-PA-PTVIWSHSGVQVKEDKRHKFS  162 (254)
Q Consensus        85 ~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~-~~~~W~~~~~~~~~~~~~~~~  162 (254)
                      +|.+.+..+.......+.+.  .....+|.+...+.......|+.+.|.|.+.+. |+ +.+.|+++|..+.........
T Consensus        84 ~C~a~~~~~~~~~~~~v~~~--~~~~~~P~v~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~  161 (207)
T 2vol_A           84 KCRVNSAAFPAPIEKTISKT--KGRPKAPQVYTLPPPKEQMAKDKVSLTCMITDFFPEDITVEWESNGQPAENYKNTQPI  161 (207)
T ss_dssp             EEEEECTTCSSCEEEEECCC--CCCCBCCEEEEECCCTGGGSSSEEEEEEEEEEEBSSCCEEEEEETTEECSCEEECCCE
T ss_pred             EEEEEccCCCCceEEEeccC--CCCCcCCeEEEeCCCHHHhcCCceEEEEEEeeEECCCCEEEEEECCEeccCcccCCce
Confidence            99999987753222233210  011234444322222222358999999999985 44 389999999987533222222


Q ss_pred             EcCCCC-ceeeEEEEccCCCCCceeEEEEEEcCCCcc
Q psy7036         163 IDKDGH-SYFASLEIIDVTIEDAGKYKVTAKNELGES  198 (254)
Q Consensus       163 ~~~~~~-~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~  198 (254)
                      ...++. ...+.|.|.....+|.|.|+|.|.|.....
T Consensus       162 ~~~~g~~~~~s~l~i~~~~~~~~g~ytC~a~n~~l~~  198 (207)
T 2vol_A          162 MDTDGSYFVYSKLNVQKSNWEAGNTFTCSVLHEGLHN  198 (207)
T ss_dssp             ECTTSCEEEEEEEEEEHHHHSSCCEEEEEEECTTSGG
T ss_pred             ECCCCCEEEEEEEEECHHHcCCCCEEEEEEECCCCCC
Confidence            233332 334567777766778999999999987644

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens}

Probab=99.91  E-value=1.8e-23  Score=146.43  Aligned_cols=163  Identities=15%  Similarity=0.220  Sum_probs=111.9

Q ss_pred             eCCCceeecCCCeEEEEEEEee-CCCCceEEEeCCEEee---eCCc-------------ceEEEeecCCcceEEEEEEec
Q psy7036          13 QKPQLRQEDEGNRLIFECQLLC-NPKPDIVWFRGETQLS---EDTR-------------TVMKTTPIGTNKYLVALELDD   75 (254)
Q Consensus        13 ~~~~~~~v~~g~~v~l~C~~~~-~~~~~v~W~~~~~~~~---~~~~-------------~~~~~~~~~~~~~~~~l~i~~   75 (254)
                      ..|..+.+.+|++|+|.|.+.+ .+.+.+.|++++..+.   ....             .++....      ..+|.|.+
T Consensus         3 ~~p~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~R~~~~~------~~sL~I~~   76 (193)
T 2if7_A            3 LTPLMVNGILGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFTQ------SYSLQLSN   76 (193)
T ss_dssp             CCCEEEEEETTSCEEECCCCCCCSCCCEEEEEETTEEEEEEECCSSSCCEEEECCHHHHTTEEECT------TCCEEECS
T ss_pred             CCCeEEEEEecCeEEEeccCCCcccccEEEEEECCEEEEEEecccCCCCceeecCccccccEEECC------CeEEEECC
Confidence            3566788999999999999875 4556899999986542   1100             0122111      12799999


Q ss_pred             cCCCCCeEEEEEEEcCCCceEEEEEEEEeccccCCCCCccccCCCeeeecCCC-eEEEEEEEeeC-CCCeEEEEECCEec
Q psy7036          76 VIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDGK-RLLFECRIQAD-PAPTVIWSHSGVQV  153 (254)
Q Consensus        76 ~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~-~~~l~C~~~~~-~~~~~~W~~~~~~~  153 (254)
                      ++..|+|.|+|.+.+..+.....+.|.|....   ..|.+....  .....|. .+.|.|.+.+. |.+.+.|++++..+
T Consensus        77 v~~~D~G~Y~C~~~~~~~~~~~~~~L~V~~~~---~~p~i~~~~--~~~~~g~~~v~L~C~~~g~~p~p~i~W~~~g~~l  151 (193)
T 2if7_A           77 LKMEDTGSYRAQISTKTSAKLSSYTLRILRQL---RNIQVTNHS--QLFQNMTCELHLTCSVEDADDNVSFRWEALGNTL  151 (193)
T ss_dssp             CCGGGCEEEEEEEECSSCEEEEEEEEEEECCC---EEEEEEECC--C---CSSEEEEEEEEEESCCTTCEEEEEETTEEE
T ss_pred             CCcccCceEEEEEEecCCCeEEEEEEEEEccC---CCCeEecCc--eeecCCCceEEEEEEEecCCCceEEEEEeCCEEc
Confidence            99999999999999988776667788886311   112222222  1123455 89999999985 57899999998765


Q ss_pred             ccCCcceEEEcCCCCceeeEEEEccCCCC-CceeEEEEEEcCCCcceEE
Q psy7036         154 KEDKRHKFSIDKDGHSYFASLEIIDVTIE-DAGKYKVTAKNELGESNAT  201 (254)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~l~i~~~~~~-d~G~y~C~~~~~~~~~~~~  201 (254)
                      ...          .     .|.|.....+ |.|.|+|.|.|..|..+..
T Consensus       152 ~~~----------~-----~l~i~~~~~~~d~G~Y~C~a~N~~g~~s~~  185 (193)
T 2if7_A          152 SSQ----------P-----NLTVSWDPRISSEQDYTCIAENAVSNLSFS  185 (193)
T ss_dssp             ESS----------S-----EEEEEECTTTCSCCEEEEEEEETTEEEEEE
T ss_pred             CCC----------C-----eEEEEeccCcCCCCcEEEEEECCCCccccc
Confidence            321          1     4666544444 8999999999999877554

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A

Probab=99.91  E-value=3e-23  Score=157.33  Aligned_cols=183  Identities=16%  Similarity=0.220  Sum_probs=133.0

Q ss_pred             CCCee--EeCCCceeecCC---CeEEEEEE-EeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCC
Q psy7036           7 FAPSF--TQKPQLRQEDEG---NRLIFECQ-LLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETD   80 (254)
Q Consensus         7 ~~p~~--~~~~~~~~v~~g---~~v~l~C~-~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d   80 (254)
                      .+|.+  ...+....+.+|   +.++|.|. ..+.|.+.++|++++......   .......+.......|.|.+++..|
T Consensus       129 ~~p~~~~~~~~~~~~~~~g~~~~~~~l~C~~~~~~p~~~i~W~~~~~~~~~~---~~~~~~~~~~~~~~~L~i~~~~~~d  205 (331)
T 3u83_A          129 AKPTNWIEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETRLKGEAEY---QEIRNPNGTVTVISRYRLVPSREAH  205 (331)
T ss_dssp             BCCEEEEEECSSCEEECTTCCCCEEEEEEEEEEEBSCCEEEEEESSCCEEEE---EEEECTTSCEEEEEEEEECCCGGGT
T ss_pred             cCCcceeecCCCceeecCCCccceEEEEEEecCCcCCceEEEEcCCCCcccc---ceeECCCCcEEEEEEEEEEeccccC
Confidence            34544  235566678888   78999998 778899999999953221110   0111112222233479999999999


Q ss_pred             CeEEEEEEEcCCCceEEEEEEEEeccccCCCCCccc-cCCCeeeecCCCeEEEEEEEeeCCCCe-EEEEECCEecccCCc
Q psy7036          81 AGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFL-KKPSIRQEDDGKRLLFECRIQADPAPT-VIWSHSGVQVKEDKR  158 (254)
Q Consensus        81 ~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~-~~~~~~~~~~g~~~~l~C~~~~~~~~~-~~W~~~~~~~~~~~~  158 (254)
                      +|.|+|.+.|..+.....+.|.|..      +|.+. .......+..|+.+.|.|.+.+.|.+. +.|++++..+.... 
T Consensus       206 ~G~Y~C~a~n~~~~~~~~~~l~V~~------~P~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~i~W~~~~~~~~~~~-  278 (331)
T 3u83_A          206 QQSLACIVNYHMDRFKESLTLNVQY------EPEVTIEGFDGNWYLQRMDVKLTCKADANPPATEYHWTTLNGSLPKGV-  278 (331)
T ss_dssp             TCEEEEEEEETTEEEEEEEECCEEE------EEEEEEECCCSCCBTTCCCEEEEEEEEEESCCCEEEEEETTBSCCTTE-
T ss_pred             CCEEEEEEecCCCcceeeEEEEEec------CCeEEEecCCCceEeCCCeEEEEEeCcCCCCCCEEEEEECCCcccccc-
Confidence            9999999999988877777777753      33332 223334577899999999999999998 99999998775331 


Q ss_pred             ceEEEcCCCCceeeEEEEc-cCCCCCceeEEEEEEcCCCcceEEEEEEEec
Q psy7036         159 HKFSIDKDGHSYFASLEII-DVTIEDAGKYKVTAKNELGESNATISLNFDS  208 (254)
Q Consensus       159 ~~~~~~~~~~~~~~~l~i~-~~~~~d~G~y~C~~~~~~~~~~~~~~~~v~~  208 (254)
                         ... ++     .|.|. ++..+|.|.|+|.|.|..|.....+.|.|..
T Consensus       279 ---~~~-~~-----~L~i~~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~  320 (331)
T 3u83_A          279 ---EAQ-NR-----TLFFKGPINYSLAGTYICEATNPIGTRSGQVEVNITE  320 (331)
T ss_dssp             ---EEE-TT-----EEEECSCCCGGGCEEEEEEEEETTEEEEEEEEECCBC
T ss_pred             ---eec-Cc-----EEEEeCCCccccCeEEEEEEEeccccceEEEEEEEec
Confidence               111 22     79999 8999999999999999999988888888775

>1q9r_B S25-2 FAB (IGG1K) heavy chain; antigen-binding fragment, anti-carbohydrate, anti-LPS, antibody, immunoglobulin, KDO, complex, immune system; HET: KDA KDO; 1.45A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q9l_B 1q9k_B* 1q9q_B* 1q9v_B* 2r1w_B* 2r1x_B* 2r1y_B* 2r2b_B* 2r2e_B* 2r2h_B* 3bpc_B* 3sy0_B* 3t4y_B* 3t65_B* 2r23_B* 1q9t_B* 3t77_B* 3okl_B* 3okk_B* 3okm_B ...

Probab=99.91  E-value=2.4e-23  Score=149.12  Aligned_cols=186  Identities=11%  Similarity=0.162  Sum_probs=119.3

Q ss_pred             CCCceeecCCCeEEEEEEEeeCC--CCceEEEeCC--EE---ee----e----------CCcceEEEeecCCcceEEEEE
Q psy7036          14 KPQLRQEDEGNRLIFECQLLCNP--KPDIVWFRGE--TQ---LS----E----------DTRTVMKTTPIGTNKYLVALE   72 (254)
Q Consensus        14 ~~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~~--~~---~~----~----------~~~~~~~~~~~~~~~~~~~l~   72 (254)
                      .|....+.+|++++|.|.+.+.+  .+.+.|||++  ..   +.    .          ....++....+. .....+|.
T Consensus         6 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~-~~~~~~L~   84 (222)
T 1q9r_B            6 ESGGGLVQSGGSLRLSCATSGFTFTDYYMSWVRQPPGKALEWLGFIRNKANGYTTEYSPSVKGRFTISRDN-SQSILYLQ   84 (222)
T ss_dssp             EECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECCGGGTTCEEECTTTBTTEEEEEET-TTTEEEEE
T ss_pred             cCCceeEcCCCEEEEEEEecCccCCCCcEEEEEECCCCCcEEEEEEccCCcccccccCcccCCceEEEEEC-CCCeEEEE
Confidence            34566899999999999998755  6789999843  11   10    0          001122222111 12245899


Q ss_pred             EeccCCCCCeEEEEEEEcCCC-----ceEEEEEEEEeccccCCCCCccccCCCeeeecCCCeEEEEEEEeeC-CCC-eEE
Q psy7036          73 LDDVIETDAGLYKVKAKNKMG-----EVAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQAD-PAP-TVI  145 (254)
Q Consensus        73 i~~~~~~d~G~Y~C~~~~~~~-----~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~-~~~  145 (254)
                      |.+++.+|+|.|.|.+.+..+     .......|.|...  ...+|.+........+..|+.+.|.|.+.+. |.+ .+.
T Consensus        85 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~--~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~  162 (222)
T 1q9r_B           85 MNTLRAEDSATYYCARDHDGYYERFSYWGQGTLVTVSAA--KTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVT  162 (222)
T ss_dssp             ECSCCGGGCEEEEEEECCCSSCCSCCCBCCCEEEEECSS--CCBCCEEEEECCCSCCCCSSEEEEEEEEEEEBSSCCEEE
T ss_pred             ECcCCcccCeEEEEEEeccCCcccceEeCCceEEEeccC--CCCCCeEEEccccccccCCCcEEEEEEEccEECCCCEEE
Confidence            999999999999999998654     2223456666531  1123433322222234579999999999985 887 999


Q ss_pred             EEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcceEEEEE
Q psy7036         146 WSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISL  204 (254)
Q Consensus       146 W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~  204 (254)
                      |++++..+.... .......+.+...+.|.|.+...+| |.|+|.|.|..+.......|
T Consensus       163 W~~~g~~~~~~~-~~~~~~~~~~~~~s~L~i~~~~~~d-g~y~C~a~n~~~~~~~~~~i  219 (222)
T 1q9r_B          163 WNSGSLSSGVHT-FPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKVDKKI  219 (222)
T ss_dssp             EGGGTBCTTEEE-EEEEEETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGTEEEEEEC
T ss_pred             EecCCeEcceEe-ccccccCCcEEEEEEEEECchhcCC-CeEEEEEEccCCCCcEEEec
Confidence            999987654221 1111111222234579999999889 99999999998876655544

>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1

Probab=99.91  E-value=2.3e-22  Score=146.31  Aligned_cols=193  Identities=15%  Similarity=0.214  Sum_probs=121.8

Q ss_pred             CeeEeCCCceeecCCCeEEEEEEEeeCC--CCceEEEeCC--EE---ee--------------eCCcceEEEeecCCcce
Q psy7036           9 PSFTQKPQLRQEDEGNRLIFECQLLCNP--KPDIVWFRGE--TQ---LS--------------EDTRTVMKTTPIGTNKY   67 (254)
Q Consensus         9 p~~~~~~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~~--~~---~~--------------~~~~~~~~~~~~~~~~~   67 (254)
                      +.+... ....+.+|++++|.|.+.+.|  .+.+.|+|++  ..   +.              ...++.+...   ....
T Consensus         4 ~~v~~p-~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~---~~~~   79 (247)
T 2ghw_B            4 VQLVQS-GGGVVQPGKSLRLSCAASGFAFSSYAMHWVRQAPGKGLEWVAVISYDGSNKYYADSVKGRFTISRD---NSKN   79 (247)
T ss_dssp             CEEEEE-CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEE---TTTT
T ss_pred             eEEEec-CCEEEecCCcEEEEEEeccccCCCceEEEEEeCCCCceEEEEEEecCCCceeeCccccCcEEEEEe---CCCC
Confidence            344444 557899999999999998876  6789999842  11   10              0122222211   1122


Q ss_pred             EEEEEEeccCCCCCeEEEEEEEcCCCc--eEEEEEEEEecccc---------CCCCCccccCCCeeeecCCCeEEEEEEE
Q psy7036          68 LVALELDDVIETDAGLYKVKAKNKMGE--VAASINLNFSREQI---------DGLAPTFLKKPSIRQEDDGKRLLFECRI  136 (254)
Q Consensus        68 ~~~l~i~~~~~~d~G~Y~C~~~~~~~~--~~~~~~l~v~~~~~---------~~~~~~~~~~~~~~~~~~g~~~~l~C~~  136 (254)
                      ..+|.|.+++.+|+|.|+|.+.|..+.  ......|.|.....         ...++.+...+....+.+|+.++|.|.+
T Consensus        80 ~~~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~  159 (247)
T 2ghw_B           80 TLYLQMNSLRAEDTAVYYCARDRSYYLDYWGQGTLVTVSSGGGGSGGGGSGGGGSETTLTQSPATLSLSPGERATLSCRA  159 (247)
T ss_dssp             EEEEEECSCCGGGCEEEEEEEEETTEEEEECCCEEEEECSCC------------CCCCEEEECSEEEECTTSCEEEEEEE
T ss_pred             EEEEEECcCCHHHCEEEEEeeeccCCccccCCceEEEEecccccccccccCCCCcceEEEccCCEEEecCCCcEEEEEEe
Confidence            347999999999999999999987322  22344667653210         0123333444556678899999999999


Q ss_pred             eeCCCCeEEEEE--CCEecc----------cCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcc-eEEEE
Q psy7036         137 QADPAPTVIWSH--SGVQVK----------EDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGES-NATIS  203 (254)
Q Consensus       137 ~~~~~~~~~W~~--~~~~~~----------~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~-~~~~~  203 (254)
                      .+.+.+.+.|+|  ++..+.          .....++......  ....|.|.+++.+|+|.|+|.|.|..... .....
T Consensus       160 ~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~--~~~~L~I~~v~~~D~G~Y~C~a~~~~~~~~g~~t~  237 (247)
T 2ghw_B          160 SQSVRSNLAWYQQKPGQAPRPLIYDASTRATGIPDRFSGSGSG--TDFTLTISRLEPEDFAVYYCQQRSNWPPTFGQGTK  237 (247)
T ss_dssp             SSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEECSS--SEEEEEECSCCGGGCEEEEEEECSSSSCEECCCEE
T ss_pred             CCCccceEEEEEECCCCCcEEEEEEeccCCCccCCCEEEecCC--CeEEEEECcCCHHHCEEEEEEEccCCCceEcCCEE
Confidence            999888999999  444321          0011122222111  12379999999999999999999854322 23344


Q ss_pred             EEEe
Q psy7036         204 LNFD  207 (254)
Q Consensus       204 ~~v~  207 (254)
                      |.|.
T Consensus       238 l~V~  241 (247)
T 2ghw_B          238 VEVK  241 (247)
T ss_dssp             EEEC
T ss_pred             EEEC
Confidence            5554

>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens}

Probab=99.91  E-value=2.6e-23  Score=157.45  Aligned_cols=175  Identities=12%  Similarity=0.138  Sum_probs=112.4

Q ss_pred             eeecCCCeEEEEEEEeeCCCC--ceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcCCCce
Q psy7036          18 RQEDEGNRLIFECQLLCNPKP--DIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGEV   95 (254)
Q Consensus        18 ~~v~~g~~v~l~C~~~~~~~~--~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~   95 (254)
                      ..+.+|+.+.|.|.+.+.|.+  .++|+++|..+.............+.....+.|.|.....+|.|.|+|.+.|..+..
T Consensus       127 ~~~~~g~~~~l~C~~~g~p~~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~d~~g~Y~C~a~n~~~~~  206 (327)
T 2wng_A          127 ARATPQHTVSFTCESHGFSPRDITLKWFKNGNELSDFQTNVDPVGESVSYSIHSTAKVVLTREDVHSQVICEVAHVTLQG  206 (327)
T ss_dssp             SCBCTTCEEEEEEEEEEEBSSCCEEEEEETTEECCCEEEEEECSSCCSCEEEEEEEEEECCTTGGGCEEEEEEECTTSCS
T ss_pred             cccCCCCEEEEEEEEeCccCCCcEEEEEECCEEccccccccccccCCCceEEEEEEEEechhcCcCceEEEEEeccccCC
Confidence            567899999999999887655  899999999886443211111111222233468888777777899999999987652


Q ss_pred             ---EEEEEEEEeccccCCCCCccccCCCeeeecCCCeEEEEEEEeeCC-CC-eEEEEECCEecccCCcceEEEcCCCC-c
Q psy7036          96 ---AASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQADP-AP-TVIWSHSGVQVKEDKRHKFSIDKDGH-S  169 (254)
Q Consensus        96 ---~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~-~~-~~~W~~~~~~~~~~~~~~~~~~~~~~-~  169 (254)
                         .....+.+.    ...+|.+...+..  +.+|+.+.|.|.+.+.+ ++ .+.|+++|..+............++. .
T Consensus       207 ~~~~~~~~~~~~----v~~~P~i~~~~~~--~~~G~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~  280 (327)
T 2wng_A          207 DPLRGTANLSET----IRVPPTLEVTQQP--VRAENQVNVTCQVRKFYPQRLQLTWLENGNVSRTETASTVTENKDGTYN  280 (327)
T ss_dssp             CCEEEEEEGGGT----BCBCCEEEEEEEC--CSSTTCCEEEEEEEEEBSSCEEEEEEETTEEEEEEECCSCEECTTSCEE
T ss_pred             CcccceEEeccc----cCCCCEEEEecCC--cCCCCcEEEEEEEccccCCCcEEEEEECCeEccCcccCceEECCCCcEE
Confidence               223333221    1244544332222  66899999999999854 44 79999999987654333333333432 3


Q ss_pred             eeeEEEEccCCCCCceeEEEEEEcCCCcc
Q psy7036         170 YFASLEIIDVTIEDAGKYKVTAKNELGES  198 (254)
Q Consensus       170 ~~~~l~i~~~~~~d~G~y~C~~~~~~~~~  198 (254)
                      ..+.|.|..+..+|.|.|+|.|.|..+..
T Consensus       281 ~~~~L~i~~~~~~d~G~Y~C~a~N~~~~~  309 (327)
T 2wng_A          281 WMSWLLVNVSAHRDDVKLTCQVEHDGQPA  309 (327)
T ss_dssp             EEEEEEC-------CCEEEEEEEETTCCC
T ss_pred             EEEEEEEccccccCCCEEEEEEEeCCCCC
Confidence            34578999999999999999999998865

>2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens} PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A 3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L 3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ...

Probab=99.91  E-value=2.2e-23  Score=148.69  Aligned_cols=185  Identities=16%  Similarity=0.179  Sum_probs=118.8

Q ss_pred             eEeCCCceeecCCCeEEEEEEEee-CC-CCceEEEeCC--EEe---e-------e--CCcceEEEeecCCcceEEEEEEe
Q psy7036          11 FTQKPQLRQEDEGNRLIFECQLLC-NP-KPDIVWFRGE--TQL---S-------E--DTRTVMKTTPIGTNKYLVALELD   74 (254)
Q Consensus        11 ~~~~~~~~~v~~g~~v~l~C~~~~-~~-~~~v~W~~~~--~~~---~-------~--~~~~~~~~~~~~~~~~~~~l~i~   74 (254)
                      +.+ |....+.+|++++|.|.+.+ .+ .+.+.|+|++  ..+   .       .  ..++...  .   ....+.|.|.
T Consensus         4 v~q-p~~~~v~~G~~v~L~C~v~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~--~---~~~~~~L~I~   77 (216)
T 2xzc_L            4 LTQ-PPSVSAAPGQKVTISCSGSSSNIGNNYVSWYQQLPGTAPKLLIYDNNKRPSGIPDRFSGS--K---SGTSATLGIT   77 (216)
T ss_dssp             BBC-CSEEEECTTCCEEEEEECCTTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEE--E---ETTEEEEEEC
T ss_pred             EEC-CCcEEecCCCeEEEEEEeecCCCCCCeEEEEEeCCCCCcEEEEEecCccCCCCCCceEEe--c---cCCEEEEEEC
Confidence            344 67788999999999999643 32 5789999853  111   1       0  1122221  1   1223479999


Q ss_pred             ccCCCCCeEEEEEEEcCCC--ceEEEEEEEEeccccCCCCCccccCCCeeeecCCCeEEEEEEEee-CCCC-eEEEEECC
Q psy7036          75 DVIETDAGLYKVKAKNKMG--EVAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQA-DPAP-TVIWSHSG  150 (254)
Q Consensus        75 ~~~~~d~G~Y~C~~~~~~~--~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~~~~-~~~W~~~~  150 (254)
                      +++.+|+|.|+|.+.+..+  .......|.|...   ..+|.+...........|+.+.|.|.+.+ .|.+ .+.|++++
T Consensus        78 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~---~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g  154 (216)
T 2xzc_L           78 GLQTGDEADYYCGTWDSSLNPVFGGGTKLEIKRT---VAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDN  154 (216)
T ss_dssp             SCCGGGCEEEEEEEECTTSCEEEBCCEEEEECCC---CBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEETT
T ss_pred             CCCcccCEEEEEEEEeCCCcceECCCEEEEEcCC---CCCCceEEeCCChhhccCCcEEEEEEEEeEcCCceEEEEEECC
Confidence            9999999999999998775  1222345666321   13444333222112235889999999988 4554 89999999


Q ss_pred             EecccC-Cc-ceEEEcCCC-CceeeEEEEccCCCCCceeEEEEEEcCCCcceEEEEE
Q psy7036         151 VQVKED-KR-HKFSIDKDG-HSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISL  204 (254)
Q Consensus       151 ~~~~~~-~~-~~~~~~~~~-~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~  204 (254)
                      ..+... .. .......++ +...+.|.|.....+|.|.|+|.|.|..........+
T Consensus       155 ~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~i  211 (216)
T 2xzc_L          155 ALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSF  211 (216)
T ss_dssp             EECCSSEEEEECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCSSCEEEEE
T ss_pred             eecCCCeeEecCcccCCCCCEEEEEEEEECHHHhCCCCcEEEEEEcCCCCCceEEec
Confidence            987544 11 111111222 2334689999999999999999999987665554444

>1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex (immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.91  E-value=6.9e-25  Score=156.02  Aligned_cols=181  Identities=15%  Similarity=0.192  Sum_probs=119.3

Q ss_pred             eEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeC--CEEee---e---------CCcceEEEeecCCcceEEEEEEecc
Q psy7036          11 FTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRG--ETQLS---E---------DTRTVMKTTPIGTNKYLVALELDDV   76 (254)
Q Consensus        11 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~--~~~~~---~---------~~~~~~~~~~~~~~~~~~~l~i~~~   76 (254)
                      +.+ |....+.+|++++|.|.+.+.+.+.+.|||+  +..+.   .         ..++.+..     ......|.|.++
T Consensus         3 v~q-p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~-----~~~~~~L~I~~v   76 (212)
T 1nfd_E            3 LIQ-PSSASVTVGETVKITCSGDQLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGST-----SGTTATLTISGA   76 (212)
T ss_dssp             EEC-CSEEEEETTSCCCEEEEETTGGGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEE-----ETTEEEEEETTC
T ss_pred             eEC-CCeEEEeCCCcEEEEEecCCCCCCeEEEEEECCCCCcEEEEEeccccCCCccccEEEEe-----eCCEEEEEECcC
Confidence            445 7788899999999999988777778999984  22221   0         12222221     112347999999


Q ss_pred             CCCCCeEEEEEEEcCCC-c--eEEEEEEEEeccccCCCCCccccCCCeeeecCCCeEEEEEEEeeC-CC-CeEEEEECCE
Q psy7036          77 IETDAGLYKVKAKNKMG-E--VAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQAD-PA-PTVIWSHSGV  151 (254)
Q Consensus        77 ~~~d~G~Y~C~~~~~~~-~--~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~-~~~~W~~~~~  151 (254)
                      +.+|+|.|+|.+.|..+ .  ......|.|...  ...+|.+...........|+.+.|.|.+.+. |+ +.+.|++++.
T Consensus        77 ~~~D~G~Y~C~~~n~~~~~~~~~~~~~l~V~~~--~~~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~  154 (212)
T 1nfd_E           77 QPEDEAAYYCLSSYGDNNDLVFGSGTQLTVLRG--PKSSPKVTVFPPSPEELRTNKATLVCLVNDFYPGSATVTWKANGA  154 (212)
T ss_dssp             CGGGCSEEEEEEEETTTTEEEECCCEEEEEECC--CCBCCEEECCCCCHHHHHTTEECCCEEEEEEBSSCCEEEEEETTE
T ss_pred             CcccCEEEEEEEEcccCcccccCCceEEEEccC--CCCCCEEEeeCCchHhccCCceEEEEEEEeeECCccEEEEEECCe
Confidence            99999999999996322 1  122345555321  1134444433333334568899999999886 54 7999999998


Q ss_pred             ecccCCcce-EEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcce
Q psy7036         152 QVKEDKRHK-FSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESN  199 (254)
Q Consensus       152 ~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~  199 (254)
                      .+....... .....+++...+.|.|.++..+|.|.|+|.|.|..+...
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~  203 (212)
T 1nfd_E          155 TINDGVKTTKPSKQGQNYMTSSYLSLTADQWKSHNRVSCQVTHEGETVE  203 (212)
T ss_dssp             EECSSCBCCCCBCSSSCEEEEEBCCEEHHHHHTCSCEEEEEECTTTTCC
T ss_pred             EcCCCeecCCceecCCCceEEEEEEEchhhcCCCCeEEEEEEeCCceEE
Confidence            876442211 111122222235699999999999999999999876533

>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A*

Probab=99.91  E-value=1.7e-23  Score=152.46  Aligned_cols=187  Identities=10%  Similarity=0.134  Sum_probs=117.0

Q ss_pred             eCCCceeecCCCeEEEEEEEeeCCCCc-----eEEEeCCEEee------eCCcceEEEeec-------CCcceEEEEEEe
Q psy7036          13 QKPQLRQEDEGNRLIFECQLLCNPKPD-----IVWFRGETQLS------EDTRTVMKTTPI-------GTNKYLVALELD   74 (254)
Q Consensus        13 ~~~~~~~v~~g~~v~l~C~~~~~~~~~-----v~W~~~~~~~~------~~~~~~~~~~~~-------~~~~~~~~l~i~   74 (254)
                      ..|....+.+|++++|.|.+.+.|.+.     +.|++++....      ............       .......+|.|.
T Consensus         8 ~~p~~~~v~~G~~v~L~C~~~g~p~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~   87 (248)
T 3pv7_A            8 MAGGTQITPLNDNVTIFCNIFYSQPLNITSMGITWFWKSLTFDKEVKVFEFFGDHQEAFRPGAIVSPWRLKSGDASLRLP   87 (248)
T ss_dssp             STTSEEEEETTSCEEECCEEEESSCCCTTSCEEEEEEECSSCCCEEEEEEEESSCEEESSTTCBCCHHHHTTTBCCEEES
T ss_pred             eCCCCeEEeCCCCEEEeeEEecCCCcCCCceEEEEEEEcCCCCcceEEEEecCCcccccCCceEEEeccCCCCcEEEEeC
Confidence            455667889999999999998877665     99999632110      000000000000       001123369999


Q ss_pred             ccCCCCCeEEEEEEEcCCCceEEEEEEEEeccccCCCCCccccCCCeeeecCCCeEEEEEEEee-CCCC-eEEEEECCEe
Q psy7036          75 DVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQA-DPAP-TVIWSHSGVQ  152 (254)
Q Consensus        75 ~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~~~~-~~~W~~~~~~  152 (254)
                      +++..|+|.|+|.+.+..+.....+.|.|..      +|.+...+. .....|..+.|.|.+.+ .|.+ .+.|++++..
T Consensus        88 ~v~~~D~G~Y~C~~~~~~~~~~~~~~L~V~~------~P~v~~~~~-~~~~~~~~~~L~C~~~g~~P~pi~v~W~k~g~~  160 (248)
T 3pv7_A           88 GIQLEEAGEYRCEVVVTPLKAQGTVQLEVVA------SPASRLLLD-QVGMKENEDKYMCESSGFYPEAINITWEKQTQK  160 (248)
T ss_dssp             SCCGGGCEEEEEEEEETTEEEEEEEEEEEEB------CCEEEEECC---------CEEEEEEEEEBSSCCEEEEEEECSS
T ss_pred             CCCHHHCeEEEEEEEeCCccceeEEEEEEec------CCceEEecC-CccccCCCcEEEEEEccEECCCeEEEEEECCcc
Confidence            9999999999999999887777788888863      444333322 22345777889999998 7888 9999999865


Q ss_pred             cccCC------c-ceEEEcCCCC-ceeeEEEEccCCCCCceeEEEEEEcCCCcceEEEEEEE
Q psy7036         153 VKEDK------R-HKFSIDKDGH-SYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNF  206 (254)
Q Consensus       153 ~~~~~------~-~~~~~~~~~~-~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~v  206 (254)
                      +....      . .......++. ...+.|.|.....+|.|.|+|.|.|..+.......+.+
T Consensus       161 l~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~n~~~~~~~~~~v~l  222 (248)
T 3pv7_A          161 FPHPIEISEDVITGPTIKNMDGTFNVTSCLKLNSSQEDPGTVYQCVVRHASLHTPLRSNFTL  222 (248)
T ss_dssp             SCSCEEECTTEEEEEEEECTTSCEEEEEEEECC--CCCTTCEEEEEEECTTCSSCEEEEECC
T ss_pred             CCCccccccceeecccEECCCCCEEEEEEEEEcCccccCCCEEEEEEECCCCCCCcEEEEEE
Confidence            43210      0 1122222222 33467888899999999999999999887544444333

>3d9a_H Heavy chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_H 1gpo_H 3ks0_H* 1dqd_H 1ndm_B 1nak_H 1dqq_B 1dqm_H 1dqj_B 1nby_B 1nbz_B 1xgu_B 1ndg_B 1xgt_B 1xgp_B 1xgq_B 1xgr_B 1s5i_H 1f8t_H 1f90_H ...

Probab=99.91  E-value=2.3e-23  Score=147.93  Aligned_cols=181  Identities=13%  Similarity=0.169  Sum_probs=116.6

Q ss_pred             CCCceeecCCCeEEEEEEEeeCC--CCceEEEeC--CEEe----e------------eCCcceEEEeecCCcceEEEEEE
Q psy7036          14 KPQLRQEDEGNRLIFECQLLCNP--KPDIVWFRG--ETQL----S------------EDTRTVMKTTPIGTNKYLVALEL   73 (254)
Q Consensus        14 ~~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~--~~~~----~------------~~~~~~~~~~~~~~~~~~~~l~i   73 (254)
                      .|....+.+|++++|.|.+.+.+  .+.+.|+|+  +...    .            ...++.+....   ....++|.|
T Consensus         6 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~---~~~~~~L~I   82 (210)
T 3d9a_H            6 ESGPSLVKPSQTLSLTCSVTGDSITSDYWSWIRKFPGNRLEYMGYVSYSGSTYYNPSLKSRISITRDT---SKNQYYLDL   82 (210)
T ss_dssp             EESCSEECTTSCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTSCEEECGGGTTTEEEEEEG---GGTEEEEEE
T ss_pred             cCCCEEecCCCcEEEEEEEecccCCCCcEEEEEeCCCCCcEEEEEEcCCCCeEECcccCceEEEEecC---CCCEEEEEE
Confidence            35667899999999999998765  478999985  2211    1            11222222211   112348999


Q ss_pred             eccCCCCCeEEEEEEEcCCCceEEEEEEEEeccccCCCCCccccCCCeeeecCCCeEEEEEEEeeC-CCC-eEEEEECCE
Q psy7036          74 DDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQAD-PAP-TVIWSHSGV  151 (254)
Q Consensus        74 ~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~-~~~W~~~~~  151 (254)
                      .+++.+|+|.|.|.+.+.. .......|.|...  ...+|.+........+..|+.+.|.|.+.+. |.+ .+.|++++.
T Consensus        83 ~~v~~~D~G~Y~C~~~~~~-~~~~~~~l~V~~~--~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~~  159 (210)
T 3d9a_H           83 NSVTTEDTATYYCANWDGD-YWGQGTLVTVSAA--KTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSL  159 (210)
T ss_dssp             CSCCGGGCEEEEEEETTSS-CBCCCEEEEECCC--CCBCCEEEEECCTTSCCCSSEEEEEEEEEEEBSSCCEEEEGGGTB
T ss_pred             CCCCcccCEEEEEEEecCc-ccccceEEEeccC--CCCCCEEEEecCCcccccCCcEEEEEEEeeEecCCcEEEEeeCCc
Confidence            9999999999999998863 2222345666421  1123333322222335679999999999886 877 999999987


Q ss_pred             ecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcceEEE
Q psy7036         152 QVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATI  202 (254)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~  202 (254)
                      .+......... ........+.|.|.....+| |.|+|.|.|..+......
T Consensus       160 ~~~~~~~~~~~-~~~~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~~~  208 (210)
T 3d9a_H          160 SSGVHTFPAVL-QSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKVDK  208 (210)
T ss_dssp             CTTEEECCCEE-ETTEEEEEEEEEEEGGGTTT-SCCEEEEEEGGGTEEEEE
T ss_pred             ccceEEcCCcc-CCCcEEEEEEEEEcHHHcCC-CcEEEEEEeCCCCccccc
Confidence            64321111111 11112234579999888877 999999999988765443

>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A

Probab=99.91  E-value=3.7e-23  Score=145.80  Aligned_cols=172  Identities=12%  Similarity=0.127  Sum_probs=115.8

Q ss_pred             CCCeeEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEE
Q psy7036           7 FAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKV   86 (254)
Q Consensus         7 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C   86 (254)
                      .+|.|...|. ..+.+|++|+|.|.+. .+.+.+.|||+|..+........ .   ........|.|.+++.+|+|.|+|
T Consensus         7 ~~P~i~~~p~-~~v~~G~~v~L~C~~~-~~~~~~~w~k~g~~~~~~~~~~~-~---~~~~~~~~l~I~~v~~~D~G~Y~C   80 (201)
T 1nkr_A            7 RKPSLLAHPG-PLVKSEETVILQCWSD-VMFEHFLLHREGMFNDTLRLIGE-H---HDGVSKANFSISRMTQDLAGTYRC   80 (201)
T ss_dssp             CCCEEEEESC-SEEETTCCEEEEEEES-SCCSEEEEEEESSSCEEEEEECE-E---ETTEEEEEEEESSCCGGGCEEEEE
T ss_pred             CCCeEEEEcC-CccCCCCcEEEEEecc-CCCCEEEEEECCCcCCcceeeee-c---CCCCceEEEEeccCCcccCeEEEE
Confidence            4678888776 6788999999999997 46789999999875532111000 0   011123379999999999999999


Q ss_pred             EEEcCCC-----ceEEEEEEEEeccccCCCCCccccCCCeeeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcceE
Q psy7036          87 KAKNKMG-----EVAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKF  161 (254)
Q Consensus        87 ~~~~~~~-----~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~  161 (254)
                      .+.+...     .....+.|.|...   ..+|.+...+. ..+.+|+.++|.|.+.+ +.+.+.|+|++..+........
T Consensus        81 ~a~~~~~~~~~~~~s~~~~l~V~~~---~~~p~i~~~p~-~~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~~~  155 (201)
T 1nkr_A           81 YGSVTHSPYQVSAPSDPLDIVIIGL---YEKPSLSAQPG-PTVLAGENVTLSCSSRS-SYDMYHLSREGEAHERRLPAGP  155 (201)
T ss_dssp             EEEBTTBTTCCCCCCCCEEEEEECS---SCCCEEEEESC-SEECTTCEEEEEEEESS-CCSEEEEEETTCSSCEEEECEE
T ss_pred             eEecCCCCccccCCCCCEEEEeecc---CCCCceecCCC-CccCCCCeEEEEEeCCC-CCceEEEEECCcccCccccccc
Confidence            9986431     2234556676531   12344433333 35789999999999875 5678999999876643211111


Q ss_pred             EEcCCCCceeeEEEEccCCCCCceeEEEEEEcC
Q psy7036         162 SIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNE  194 (254)
Q Consensus       162 ~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~  194 (254)
                      ..  .+ .....|.|.+++  |+|.|+|.|.+.
T Consensus       156 ~~--~~-~~~~~L~i~~v~--d~G~Y~C~a~~~  183 (201)
T 1nkr_A          156 KV--NG-TFQADFPLGPAT--HGGTYRCFGSFH  183 (201)
T ss_dssp             EE--TT-EEEEEEEEEECC--SCEEEEEEEEET
T ss_pred             cc--CC-ceEEEEEeCCcC--CCeeEEEEEEcC
Confidence            11  11 112479999998  999999999865

>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.91  E-value=3.2e-23  Score=149.88  Aligned_cols=181  Identities=14%  Similarity=0.128  Sum_probs=125.0

Q ss_pred             CCCeeEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEE
Q psy7036           7 FAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKV   86 (254)
Q Consensus         7 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C   86 (254)
                      .+|.|...|.. .+.+|++|+|.|.+.+ +...+.|||++..+.......      ........|.|.+++.+|+|.|+|
T Consensus         6 ~kP~i~~~P~~-~v~~G~~VtL~C~~~~-~~~~~~w~k~g~~~~~~~~~~------~~~~~~~~L~I~~v~~~DsG~Y~C   77 (242)
T 1p6f_A            6 PKPFIWAEPHF-MVPKEKQVTICCQGNY-GAVEYQLHFEGSLFAVDRPKP------PERINKVKFYIPDMNSRMAGQYSC   77 (242)
T ss_dssp             CCCEEEEESCS-EEETTCCEEEEEECCT-TCCEEEEEETTEEEEEECCSS------CTTCCEEEEEECSCCGGGCEEEEE
T ss_pred             CCCEEEeeCCC-ccCCCCcEEEEEeeCC-CCcEEEEEECCCccccccccc------cCCcceeEEEecCCCcccCeEEEE
Confidence            47888888877 7899999999999864 456899999998765211100      011123379999999999999999


Q ss_pred             EEEcCCCc--eEEEEEEEEeccccCCCCCccccCCCeeeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEEc
Q psy7036          87 KAKNKMGE--VAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSID  164 (254)
Q Consensus        87 ~~~~~~~~--~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~  164 (254)
                      .+.+..+.  ....+.|.|...   ...|.+...+ ...+.+|+.++|.|.+.+. .+.+.|+|++..+..    .....
T Consensus        78 ~~~~~~~~s~~S~~~~L~V~~~---~~~P~i~~~p-~~~v~~G~~vtL~C~~~~~-~~~~~w~k~g~~~~~----~~~~~  148 (242)
T 1p6f_A           78 IYRVGELWSEPSNLLDLVVTEM---YDTPTLSVHP-GPEVISGEKVTFYCRLDTA-TSMFLLLKEGRSSHV----QRGYG  148 (242)
T ss_dssp             EEEETTEECCCCCCEEEEEECC---SCCCEEEEES-CSEEETTCEEEEEEECTTS-CSEEEEEECSSSCEE----EEEEC
T ss_pred             EEecCCccccCCcceEEEeecc---cCCCceEccC-CCccCCCCcEEEEEecCCC-CCEEEEEECCCccCc----cccCC
Confidence            99875432  234566666531   1234433333 2357789999999998654 458999999876542    11111


Q ss_pred             CCCCceeeEEEEccCCCCCceeEEEEEEcCC---CcceEEEEEEEec
Q psy7036         165 KDGHSYFASLEIIDVTIEDAGKYKVTAKNEL---GESNATISLNFDS  208 (254)
Q Consensus       165 ~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~---~~~~~~~~~~v~~  208 (254)
                      .    ....|.|.+++.+|+|.|+|.+.|..   ...+..+.|.|..
T Consensus       149 ~----~~~~l~I~~v~~~d~G~Y~C~a~n~~~~~s~~S~~~~l~V~~  191 (242)
T 1p6f_A          149 K----VQAEFPLGPVTTAHRGTYRCFGSYNNHAWSFPSEPVKLLVTG  191 (242)
T ss_dssp             S----SEEEEEEEECCGGGCEEEEEEEEEETTEECCCCCCEEEEEEC
T ss_pred             C----ceEEEEeCCCccccCEEEEEEEECCCCcccCCCCCEEEEEec
Confidence            1    12379999999999999999999864   2335566677764

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}

Probab=99.91  E-value=9.6e-24  Score=157.29  Aligned_cols=190  Identities=16%  Similarity=0.169  Sum_probs=134.3

Q ss_pred             CCCCe-eEeCCCceeecCCCeEEEEEEEeeCCC--CceEEEeC-CEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCC
Q psy7036           6 DFAPS-FTQKPQLRQEDEGNRLIFECQLLCNPK--PDIVWFRG-ETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDA   81 (254)
Q Consensus         6 ~~~p~-~~~~~~~~~v~~g~~v~l~C~~~~~~~--~~v~W~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~   81 (254)
                      ..+|. +...+....+.+|+++.|.|.+.+ +.  +.+.|+++ +..+....+..  ....+      .|.|.+++..|+
T Consensus        86 ~~~~~~~~~~~~~~~v~~g~~v~l~C~~~~-~~~~~~v~W~~~~~~~~~~~~~~~--~~~~~------~L~i~~~~~~d~  156 (292)
T 4dkd_C           86 KDPARPWNVLAQEVVVFEDQDALLPCLLTD-PVLEAGVSLVRVRGRPLMRHTNYS--FSPWH------GFTIHRAKFIQS  156 (292)
T ss_dssp             CCSSCCEEESCSEEEEETTSCEECCEEESS-GGGGSSEEEEEGGGCCCCSSCCEE--CCSSS------CCEETTCCGGGC
T ss_pred             cCccccccccCCeEEEcCCCcEEEeeeCCC-CCcceeEEEEecCCCccccCCccc--ccCCc------eEEECCCCHHHC
Confidence            33443 466677788999999999999986 44  78999997 44443333221  11111      499999999999


Q ss_pred             eEEEEEEEcCCCceE-EEEEEEEeccccCCCCCccccCCCeeeecCCCeEEEEEEEeeCCC-CeEEEEECCEecccCCcc
Q psy7036          82 GLYKVKAKNKMGEVA-ASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQADPA-PTVIWSHSGVQVKEDKRH  159 (254)
Q Consensus        82 G~Y~C~~~~~~~~~~-~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~-~~~~W~~~~~~~~~~~~~  159 (254)
                      |.|+|.+.|..+... ..+.|.|...  ...+|.+...+....+..|+.+.|.|.+.+.|. ..+.|++++..+......
T Consensus       157 G~Y~C~a~n~~~~~~s~~~~l~V~~~--~~~~p~i~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~w~~~~~~~~~~~~~  234 (292)
T 4dkd_C          157 QDYQCSALMGGRKVMSISIRLKVQKV--IPGPPALTLVPAELVRIRGEAAQIVCSASSVDVNFDVFLQHNNTKLAIPQQS  234 (292)
T ss_dssp             SEEEEEECSTTSCEECCCEEEEEECC--CCSSCEEEEESSCBCCCSSSCEEEEEEEEESSSCCEEECCBSSCCCCCCBEE
T ss_pred             eEEEEEEEeCCCceeEEEEEEEEeCC--CCCCCeEEccCCceeEecCCCEEEEEEecCCCCceEEEEeCCCcccccCccc
Confidence            999999998776543 3677777631  112555555555556678999999999988765 568899988766543332


Q ss_pred             eEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcceEEEEEEEec
Q psy7036         160 KFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFDS  208 (254)
Q Consensus       160 ~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~v~~  208 (254)
                      .+.  .......+.|.|.+++.+|.|.|+|.|.|..|....++.|.|..
T Consensus       235 ~~~--~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~  281 (292)
T 4dkd_C          235 DFH--NNRYQKVLTLNLDQVDFQHAGNYSCVASNVQGKHSTSMFFRVVE  281 (292)
T ss_dssp             EEE--TTEEEEEEEEEESSCCTTSCEEEEEEEECSSCEEEEEEEECC--
T ss_pred             eec--cceeeeEEEEEECccChhcCeEEEEEEecCCCCceeEEEEEEee
Confidence            221  11122235899999999999999999999999988888888764

>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}

Probab=99.91  E-value=6.3e-24  Score=159.55  Aligned_cols=178  Identities=17%  Similarity=0.186  Sum_probs=128.3

Q ss_pred             EeCCCceeecCCCeEEEEEEE-eeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEc
Q psy7036          12 TQKPQLRQEDEGNRLIFECQL-LCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKN   90 (254)
Q Consensus        12 ~~~~~~~~v~~g~~v~l~C~~-~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~   90 (254)
                      ...+.......|+.+.|.|.+ .+.|.+.++|++++..+.....    ....+.....+.|.|.++...|.|.|+|.+.|
T Consensus       118 ~~~~~~~~~~~~~~~~l~C~~~~g~P~~~i~W~~~~~~~~~~~~----~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n  193 (308)
T 4fom_A          118 IKGPDSLIDGGNETVAAICIAATGKPVAHIDWEGDLGEMESTTT----SFPNETATIISQYKLFPTRFARGRRITCVVKH  193 (308)
T ss_dssp             EECSSCCCTTCSCEEEEEEEEEEEBSCCEEEECCCSSBCCEEEE----ECTTSCEEEEEEEEECCCGGGTTCEEEEEEEC
T ss_pred             ccccceeEEcCCceEEEEEEecCCcCCceEEEEECCcccccccc----eeeeecccccccceEEeeeecCCccEEEEEEc
Confidence            345555566788999999986 5789999999999877643211    11222233344799999999999999999999


Q ss_pred             CCCceEE--EEEEEEeccccCCCCCccc-cCCCeeeecCCCeEEEEEEEeeCCCC-eEEEEECCEecccCCcceEEEcCC
Q psy7036          91 KMGEVAA--SINLNFSREQIDGLAPTFL-KKPSIRQEDDGKRLLFECRIQADPAP-TVIWSHSGVQVKEDKRHKFSIDKD  166 (254)
Q Consensus        91 ~~~~~~~--~~~l~v~~~~~~~~~~~~~-~~~~~~~~~~g~~~~l~C~~~~~~~~-~~~W~~~~~~~~~~~~~~~~~~~~  166 (254)
                      ..+....  .+.|.|.      .+|.+. .......+..|+.+.|.|.+.+.|.| .+.|+|++..+.....     ..+
T Consensus       194 ~~~~~~~~~~~~l~V~------~~P~~~~~~~~~~~~~~g~~v~l~C~~~g~P~p~~v~W~k~~~~~~~~~~-----~~~  262 (308)
T 4fom_A          194 PALEKDIRYSFILDIQ------YAPEVSVTGYDGNWFVGRKGVNLKCNADANPPPFKSVWSRLDGQWPDGLL-----ASD  262 (308)
T ss_dssp             TTCSSCEEEEEECCCC------EEEEECCBCCCSCEETTCCSCEEECCEEEESCEEEEECCBSSSCCCSSCB-----CST
T ss_pred             cCCCCceEEeEEEEEe------cCCeeEEcccceeeeeccccEEEEEEEecCCCCcEEEEEECCeECCCcEE-----EcC
Confidence            8765433  4444443      233332 22233456678999999999999988 6999999877643321     112


Q ss_pred             CCceeeEEEEccCCCCCceeEEEEEEcCCCcceEEEEEEEec
Q psy7036         167 GHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFDS  208 (254)
Q Consensus       167 ~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~v~~  208 (254)
                      +    ..|.|.+++.+|+|.|+|.|.|..|....++.|.|..
T Consensus       263 ~----~~l~i~~v~~~d~G~Y~C~A~N~~G~~~~~~~l~V~~  300 (308)
T 4fom_A          263 N----TLHFVHPLTFNYSGVYICKVTNSLGQRSDQKVIYISD  300 (308)
T ss_dssp             T----EEECCSCCCSCCCSEEEEEEEETTEEEEEEEECCEEC
T ss_pred             C----eEEEECCCChhhCEEEEEEEEeCCCcEEEEEEEEEEc
Confidence            2    2567889999999999999999999988888888764

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*

Probab=99.90  E-value=9.9e-24  Score=148.88  Aligned_cols=162  Identities=15%  Similarity=0.325  Sum_probs=107.7

Q ss_pred             ecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcCCCceEEEE
Q psy7036          20 EDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASI   99 (254)
Q Consensus        20 v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~   99 (254)
                      +.+|++++|.|.+   |.+.++|+|+|..+.....      ..      ..|.|.+++.+|+|.|+|.+.+.. ..  .+
T Consensus        15 ~~~G~~v~L~C~~---p~~~i~W~k~g~~l~~~~~------~~------~~L~i~~v~~~DsG~Y~C~~~~~~-s~--~~   76 (204)
T 1sy6_A           15 YQEDGSVLLTCDA---EAKNITWFKDGKMIGFLTE------DK------KKWNLGSNAKDPRGMYQCKGSQNK-SK--PL   76 (204)
T ss_dssp             CCSSSEEEEEECS---CSSEEEEEETTEEEEEEES------SC------CCEEEEEGGGCCEEEEEEESSSSC-CC--CE
T ss_pred             ecCCCeEEEEEcC---CCCEEEEEECCEECCCCCC------CC------CeEEeCCCCcCCCEEEEEEecCCC-Ce--eE
Confidence            4689999999998   7789999999998764210      01      169999999999999999965432 21  23


Q ss_pred             EEEEeccc------------------------c-CCCCCccccCCCeeeecCCCeEEEEEEEeeCCCCeEEEEECCEecc
Q psy7036         100 NLNFSREQ------------------------I-DGLAPTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVK  154 (254)
Q Consensus       100 ~l~v~~~~------------------------~-~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~  154 (254)
                      .|.+....                        . ...++.+...+. ....+|+.++|.|.  +.|.+.+.|++++..+.
T Consensus        77 ~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~v~~~G~~v~L~C~--g~p~p~i~W~k~~~~l~  153 (204)
T 1sy6_A           77 QVYYRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQTPY-KVSISGTTVILTCP--QYPGSEILWQHNDKNIG  153 (204)
T ss_dssp             EEEEEC------------------------------------CCCC-EEEEETTEEEEECS--CCCSSCEEEEETTEEES
T ss_pred             EEEEEEeccccccccccccccccccccccccccccccccceecCCc-eeeecCCcEEEEcC--CCCCCceEEEECCEECC
Confidence            44443000                        0 000111222222 22237999999998  78888999999998875


Q ss_pred             cCCcceEEEcCCCCceeeEEEEccC-CCCCceeEEEEEEcCCCcc-eEEEEEEEe
Q psy7036         155 EDKRHKFSIDKDGHSYFASLEIIDV-TIEDAGKYKVTAKNELGES-NATISLNFD  207 (254)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~l~i~~~-~~~d~G~y~C~~~~~~~~~-~~~~~~~v~  207 (254)
                      ...........++     .|.|.++ +.+|+|.|+|.|.|..|.. +..+.|.++
T Consensus       154 ~~~~~~~~~~~~~-----~L~I~~v~~~~D~G~Y~C~A~N~~g~~~s~~l~l~~~  203 (204)
T 1sy6_A          154 GDEDDKNIGSDED-----HLSLKEFSELEQSGYYVCYPRGSKPEDANFYLYLRAR  203 (204)
T ss_dssp             CCTTCTTEEEETT-----EEEETTCCHHHHCEEEEEEETTSCGGGSSCEEEEEEC
T ss_pred             CccCCceEecCCC-----EEEEeeCCccccCEEEEEEeccCCCCceeEEEEEEEe
Confidence            4322111111233     7999999 9999999999999999863 566666543

>1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H

Probab=99.90  E-value=2.6e-22  Score=146.74  Aligned_cols=184  Identities=15%  Similarity=0.202  Sum_probs=120.5

Q ss_pred             eCCCceeecCCCeEEEEEEEeeCC--CCceEEEeC--CEEe---ee--------------CCcceEEEeecCCcceEEEE
Q psy7036          13 QKPQLRQEDEGNRLIFECQLLCNP--KPDIVWFRG--ETQL---SE--------------DTRTVMKTTPIGTNKYLVAL   71 (254)
Q Consensus        13 ~~~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~--~~~~---~~--------------~~~~~~~~~~~~~~~~~~~l   71 (254)
                      ..|....+.+|++|+|.|.+.+.+  .+.+.|+|+  +..+   ..              ..++.+...   ......+|
T Consensus         5 ~~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~---~~~~~~~L   81 (256)
T 1nqb_A            5 QQSGAELVKPGASVKLSCKASGYTFTSYWMHWVKQRPGRGLEWIGRIDPNSGGTKYNEKFKSKATLTVD---KPSSTAYM   81 (256)
T ss_dssp             EECCCEEECTTCCEEEEEEECSSCGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGTTTEEEEEE---TTTTEEEE
T ss_pred             ECCCCeeecCCCcEEEEEEeccccCCCceEEEEEECCCCCcEEEEEEecCCCceeeCcccCCeEEEEEe---cCCCEEEE
Confidence            456677899999999999998765  678999984  2211   10              122222221   11224489


Q ss_pred             EEeccCCCCCeEEEEEEEcCCCc-----eEEEEEEEEeccccCCCCCccccCCCeeeecCCCeEEEEEEEeeCCCC----
Q psy7036          72 ELDDVIETDAGLYKVKAKNKMGE-----VAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQADPAP----  142 (254)
Q Consensus        72 ~i~~~~~~d~G~Y~C~~~~~~~~-----~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~----  142 (254)
                      .|.+++.+|+|.|+|.+.+..+.     ......|.|.      .++.+...+....+.+|+.++|.|.+.+.+.+    
T Consensus        82 ~I~~v~~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~------~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~  155 (256)
T 1nqb_A           82 QLSSLTSEDSAVYYCARYDYYGSSYFDYWGQGTTVTVS------SDIELTQTPLSLPVSLGDQASISCRSSQSIVHSNGN  155 (256)
T ss_dssp             EECSCCGGGCEEEEEEECCTTSSSSCSEECCCEEEEEC------CCCCEEEECSEEEECTTCCEEEEEEESSCCBCTTSC
T ss_pred             EECcCChhhCEEEEEEEeeccCccceeEEcCceeeeec------ccccEEecCcEEEEecCCcEEEEeEecCcccccccc
Confidence            99999999999999999987552     1234566665      33444444556678899999999999888765    


Q ss_pred             -eEEEEE--CCEeccc----------CCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCc-ceEEEEEEEe
Q psy7036         143 -TVIWSH--SGVQVKE----------DKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGE-SNATISLNFD  207 (254)
Q Consensus       143 -~~~W~~--~~~~~~~----------~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~-~~~~~~~~v~  207 (254)
                       .+.|+|  ++..+..          ....++......  ....|.|.+++.+|+|.|+|.+.+.... ......|.|.
T Consensus       156 ~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~--~~~~L~I~~v~~~DsG~Y~C~a~~~~~~~fg~gt~l~V~  232 (256)
T 1nqb_A          156 TYLEWYLQKPGQSPKLLIYKVSNRFSGVPDRFSGSGSG--TDFTLKISRVEAEDLGVYYCFQGSHVPYTFGGGTKLEIK  232 (256)
T ss_dssp             BCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEET--TEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEC
T ss_pred             eEEEEEEECCCCCcEEEEEEeCCCCCccCCcEEEEccC--CEEEEEECCCChHHCEEEEEEEccCCceEECCCEEEEEE
Confidence             899999  4543210          001112111111  1237999999999999999999885432 2233445554

>3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B* 1h3p_L

Probab=99.90  E-value=3.2e-23  Score=151.27  Aligned_cols=189  Identities=18%  Similarity=0.193  Sum_probs=123.6

Q ss_pred             CCeeEeCCCceeecCCCeEEEEEEEeeCC-----CCceEEEeCC--E---Eeee---------CCcceEEEeecCCcceE
Q psy7036           8 APSFTQKPQLRQEDEGNRLIFECQLLCNP-----KPDIVWFRGE--T---QLSE---------DTRTVMKTTPIGTNKYL   68 (254)
Q Consensus         8 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~-----~~~v~W~~~~--~---~~~~---------~~~~~~~~~~~~~~~~~   68 (254)
                      .+.+.+.|....+.+|++|+|.|.+.+.+     .+.+.|||++  .   .+..         ..++...  .   ....
T Consensus        34 ~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~--~---~~~~  108 (252)
T 3bkj_L           34 DVLMTQTPLSLPVNLGEQASISCRSSQSIVHSNGHTYLEWYLQRPGQSPKLLIYQVSTRFSGVPDRFSGS--G---SGTD  108 (252)
T ss_dssp             CCCEEEECSEEEECTTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEE--E---ETTE
T ss_pred             ccEEEeCCceEEEeCCCcEEEEEEcCCCccccCCCCcEEEEEECCCCCcEEEEEcCCcccCCcCCceEEE--c---cCCE
Confidence            45567778888999999999999998876     5889999854  1   1110         1122221  1   1223


Q ss_pred             EEEEEeccCCCCCeEEEEEEEcCCCce-EEEEEEEEeccccCCCCCccccCCCeeeecCCCeEEEEEEEeeC-CCC-eEE
Q psy7036          69 VALELDDVIETDAGLYKVKAKNKMGEV-AASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQAD-PAP-TVI  145 (254)
Q Consensus        69 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~-~~~  145 (254)
                      ..|.|.+++.+|+|.|.|.+.+..+.. .....|.|...   ..+|.+...........|+.++|.|.+.+. |.+ .+.
T Consensus       109 ~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~---~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~  185 (252)
T 3bkj_L          109 FTLRISRVEAEDLGVYYCFQASLVPLTFGAGTKLELKRA---DAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVK  185 (252)
T ss_dssp             EEEEESSCCGGGCEEEEEEECSBSSCEECCCEEEEECCC---CBCCEEEEECCCHHHHHHTEEEEEEEEEEEBSSCCEEE
T ss_pred             EEEEECCCCcccCEEEEEEEEcCCccEECCCEEEEEeCC---CcCcEEEEeCCChhhcCCCcEEEEEEEeeEeCCCcEEE
Confidence            479999999999999999998875532 22345666421   123443332222223368899999999884 443 799


Q ss_pred             EEECCEecccC-Cc-ceEEEcCCCC-ceeeEEEEccCCCCCceeEEEEEEcCCCcceEEEEE
Q psy7036         146 WSHSGVQVKED-KR-HKFSIDKDGH-SYFASLEIIDVTIEDAGKYKVTAKNELGESNATISL  204 (254)
Q Consensus       146 W~~~~~~~~~~-~~-~~~~~~~~~~-~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~  204 (254)
                      |++++..+... .. .......++. ...+.|.|.+...+|.|.|+|.|.|..........+
T Consensus       186 W~k~g~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~p~~~~~  247 (252)
T 3bkj_L          186 WKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSF  247 (252)
T ss_dssp             EEETTEEECSSEEEEECCCCTTTCCEEEEEEEEEEHHHHHHCCEEEEEEECTTCSSCEEEEE
T ss_pred             EEECCeecCCCeeeecCcccCCCCCEEEEEEEEEcchhccCCCeEEEEEEeCCCCCCeeEee
Confidence            99999887543 11 1111122222 334679999999999999999999987665444333

>1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer, SCFV, variable domain, immune system; 2.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=99.90  E-value=7.1e-23  Score=148.36  Aligned_cols=179  Identities=17%  Similarity=0.206  Sum_probs=117.7

Q ss_pred             eeEeCCCceeecCCCeEEEEEEEeeCC----CCceEEEeCC--E---Eeee---------CCcceEEEeecCCcceEEEE
Q psy7036          10 SFTQKPQLRQEDEGNRLIFECQLLCNP----KPDIVWFRGE--T---QLSE---------DTRTVMKTTPIGTNKYLVAL   71 (254)
Q Consensus        10 ~~~~~~~~~~v~~g~~v~l~C~~~~~~----~~~v~W~~~~--~---~~~~---------~~~~~~~~~~~~~~~~~~~l   71 (254)
                      .+.+.|....+.+|++|+|.|.+.+.+    .+.+.|+|++  .   .+..         ..++.+.  .   .....+|
T Consensus         3 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~--~---~~~~~~L   77 (240)
T 1moe_A            3 VLTQSPASLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGT--G---SRTDFTL   77 (240)
T ss_dssp             CEEEECSEEEECTTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEE--E---ETTEEEE
T ss_pred             ceEeeCCeEEecCCCCEEEEEeCCCccccCCCceEEEEEECCCCCceEEEEEecccCcCCCccEEEE--e---cCCeEEE
Confidence            467778888999999999999998877    7889999852  1   1111         1222221  1   1123479


Q ss_pred             EEeccCCCCCeEEEEEEEcCCCc-eEEEEEEEEeccccCCCCCccccCCCeeeecCCCeEEEEEEEeeCCC--CeEEEEE
Q psy7036          72 ELDDVIETDAGLYKVKAKNKMGE-VAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQADPA--PTVIWSH  148 (254)
Q Consensus        72 ~i~~~~~~d~G~Y~C~~~~~~~~-~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~--~~~~W~~  148 (254)
                      .|.+++..|+|.|+|.+.+..+. ......|.|........++.....+....+.+|+.+.|.|.+.+.|.  +.+.|+|
T Consensus        78 ~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k  157 (240)
T 1moe_A           78 IIDPVEADDVATYYCQQTNEDPYTFGGGTKLEIKGGGSGGGGEVQLQQSGAELVEPGASVKLSCTASGFNIKDTYMHWVK  157 (240)
T ss_dssp             EESSCCGGGCEEEEEEECSSSSCCBCCCEEEEECCCSCCCCCCCEEEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEE
T ss_pred             EEcCCChhhCEEEEEEEccCCceeecCCEEEEEecCCCCCCceEEEeCCCceEEeCCCcEEEEEEEcCccCCCCEEEEEE
Confidence            99999999999999999987654 33455677753211111222333345567889999999999998873  5899999


Q ss_pred             C--CEecc-----c--C--------CcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEc
Q psy7036         149 S--GVQVK-----E--D--------KRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKN  193 (254)
Q Consensus       149 ~--~~~~~-----~--~--------~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~  193 (254)
                      +  +..+.     .  .        ...++....+.......|.|.+++.+|+|.|+|.|.+
T Consensus       158 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~  219 (240)
T 1moe_A          158 QRPEQGLEWIGRIDPANGNSKYVPKFQGKATITADTSSNTAYLQLTSLTSEDTAVYYCAPFG  219 (240)
T ss_dssp             ECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECS
T ss_pred             ECCCCCcEEEEEEcccCCccccCccccccEEEEEcccCCEEEEEECcCCHHHCEEEEEEEEe
Confidence            6  22210     0  0        0111222111111124799999999999999999985

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}

Probab=99.90  E-value=8.6e-23  Score=149.76  Aligned_cols=157  Identities=16%  Similarity=0.200  Sum_probs=119.8

Q ss_pred             eCCCceeecCCCeEEEEEEE-eeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcC
Q psy7036          13 QKPQLRQEDEGNRLIFECQL-LCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNK   91 (254)
Q Consensus        13 ~~~~~~~v~~g~~v~l~C~~-~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~   91 (254)
                      ..+....+.+|+.+.|.|.+ .+.|.+.+.|++++..+.....       .      ..|.|.+++..|+|.|+|.+.|.
T Consensus        87 ~~~~~~~~~~g~~v~l~C~~~~~~p~~~v~W~~~g~~~~~~~~-------~------~~l~i~~~~~~d~G~Y~C~~~n~  153 (262)
T 3rjd_A           87 LQVSSRVFTEGEPLALRCHAWKDKLVYNVLYYRNGKAFKFFHW-------N------SNLTILKTNISHNGTYHCSGMGK  153 (262)
T ss_dssp             EEESCSEEETTSCEEEEEEEGGGCCCEEEEEEETTEEEEEEEE-------C------CCEEESSCCGGGCEEEEEEEESS
T ss_pred             ecCCCeEEecCCeEEEEEEccCCCCCceEEEEECCccccccCC-------C------CeEEEEECChhhCEEEEEEEeCC
Confidence            34455678899999999999 6678889999999998753211       1      16999999999999999999998


Q ss_pred             CCceEEEEEEEEeccccCCCCCccccCCCeeeecCCCeEEEEEEEeeCCC-Ce----EEEEECCEecccCCcceEEEcCC
Q psy7036          92 MGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQADPA-PT----VIWSHSGVQVKEDKRHKFSIDKD  166 (254)
Q Consensus        92 ~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~-~~----~~W~~~~~~~~~~~~~~~~~~~~  166 (254)
                      .+.....+.|.|....   .+|.+...+ ...+..|+.+.|.|.+.+.|. +.    +.|++++..+...       ...
T Consensus       154 ~~~~~~~~~l~V~~~~---~~p~~~~~~-~~~~~~g~~~~l~C~~~~~p~~p~~~~~~~w~~~~~~~~~~-------~~~  222 (262)
T 3rjd_A          154 HRYTSAGISVTVKELF---PAPVLNASV-TSPLLEGNLVTLSCETKLLLQRPGLQLYFSFYMGSKTLRGR-------NTS  222 (262)
T ss_dssp             SEEEEECEEEEEECSS---CCCEEEESS-CSSEETTCCEEEEEECCCCCC-----EEEEEEETTEEEEEE-------ESC
T ss_pred             CCccccceEEEeccCC---CCCeEeecC-ceeecCCCeEEEEeEcccCCCCCCccEEEEEEeCCcEeccc-------CCC
Confidence            8777777788876311   233333333 445778999999999998875 43    7899998876422       111


Q ss_pred             CCceeeEEEEccCCCCCceeEEEEEEcCCCcc
Q psy7036         167 GHSYFASLEIIDVTIEDAGKYKVTAKNELGES  198 (254)
Q Consensus       167 ~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~  198 (254)
                           +.|.|.++..+|.|.|+|.|.|..|..
T Consensus       223 -----~~L~i~~v~~~d~G~Y~C~a~n~~G~~  249 (262)
T 3rjd_A          223 -----SEYQILTARREDSGLYWCEAATEDGNV  249 (262)
T ss_dssp             -----CEEEESSCCGGGCEEEEEEEEETTSSC
T ss_pred             -----ceEEEEEechhhCeEEEEEEEcccCce
Confidence                 279999999999999999999999975

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A*

Probab=99.90  E-value=6.4e-23  Score=144.60  Aligned_cols=175  Identities=12%  Similarity=0.150  Sum_probs=116.2

Q ss_pred             ceeecCCCeEEEEEEEee----CCCCceEEEeCCEEeeeCC----------cceEEEeecCCcceEEEEEEeccCCCCCe
Q psy7036          17 LRQEDEGNRLIFECQLLC----NPKPDIVWFRGETQLSEDT----------RTVMKTTPIGTNKYLVALELDDVIETDAG   82 (254)
Q Consensus        17 ~~~v~~g~~v~l~C~~~~----~~~~~v~W~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~l~i~~~~~~d~G   82 (254)
                      .+.+.+|++++|.|.+.+    .+.+.+.|++++..+....          ..+...... .   ..+|.|.+++..|+|
T Consensus         3 ~v~v~~G~~v~L~C~~~~~~~~~~~~~~~W~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~-~---~~~L~I~~v~~~D~G   78 (201)
T 1dr9_A            3 HVTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDIT-N---NLSIVILALRPSDEG   78 (201)
T ss_dssp             EEEEETTSCEEECCSCCCCTTHHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEEEST-T---TTEEEECSCCGGGCE
T ss_pred             eEEEEeCCCEEEecccCCCcccccccEEEEEeCCcEEEEEeCCceeecCcccceeEEccC-C---CcEEEEecccchhCe
Confidence            457889999999999853    3567899999998763110          111111111 1   127999999999999


Q ss_pred             EEEEEEEcCCCce-----EEEEEEEEeccccCCCCCccccCCCeeeecCCCeEEEEEEEe-eCCCCeEEEEECCEecccC
Q psy7036          83 LYKVKAKNKMGEV-----AASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQ-ADPAPTVIWSHSGVQVKED  156 (254)
Q Consensus        83 ~Y~C~~~~~~~~~-----~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~-~~~~~~~~W~~~~~~~~~~  156 (254)
                      .|+|.+.+..+..     ...+.|.|....   ..|.+.    ......|+.+.|.|.+. +.|.|.+.|++++..+...
T Consensus        79 ~Y~C~~~~~~g~~~~~~~~~~~~l~V~~~~---~~p~~~----~~~~~~g~~~~l~C~~~~g~P~p~i~W~k~g~~l~~~  151 (201)
T 1dr9_A           79 TYECVVLKYEKDAFKREHLAEVTLSVKADF---PTPSIS----DFEIPTSNIRRIICSTSGGFPEPHLSWLENGEELNAI  151 (201)
T ss_dssp             EEEEEEEECCTTSCEEEEEEEEEEEEECCC---CCCEEE----EEECSSTTEEEEEEEEEEESSCEEEEEEESSCEECCS
T ss_pred             EEEEEEEcCCCCccccccccEEEEEEcCCC---CCCceE----eccCCCCCeEEEEEecCCccCCCEEEEEECCEECccc
Confidence            9999999976543     346667765311   112211    11224588999999995 8999999999999887644


Q ss_pred             CcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcceEEEEE
Q psy7036         157 KRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISL  204 (254)
Q Consensus       157 ~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~  204 (254)
                      . .......++..+. ...+..+..+|.|.|+|.|.|..+.....+.+
T Consensus       152 ~-~~~~~~~~~~~~~-~~~~~~v~~~d~g~Y~C~a~n~~~~~s~~~~~  197 (201)
T 1dr9_A          152 N-TTVSQDPETELYA-VSSKLDFNMTTNHSFMCLIKYGHLRVNQTFNW  197 (201)
T ss_dssp             E-EEEEECTTTCCEE-EEEEEEEETTSCEEEEEEEEETTCCEEEEEEE
T ss_pred             c-ceEEecCCCcEEE-EEEEEEEEecCCCEEEEEEecCcceeeeEEec
Confidence            2 2333333322221 12233445689999999999999887776654

>3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L

Probab=99.90  E-value=2.3e-22  Score=148.63  Aligned_cols=182  Identities=14%  Similarity=0.186  Sum_probs=118.3

Q ss_pred             CCeeEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeCC-----EEeee---------CCcceEEEeecCCcceEEEEEE
Q psy7036           8 APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGE-----TQLSE---------DTRTVMKTTPIGTNKYLVALEL   73 (254)
Q Consensus         8 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~-----~~~~~---------~~~~~~~~~~~~~~~~~~~l~i   73 (254)
                      .+.+.+.|....+.+|++|+|.|.+.+.+.+.+.|||++     ..+..         ..++.+.  .   ......|.|
T Consensus        12 ~~~v~~~p~~~~v~~G~~v~L~C~~~~~p~~~i~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~--~---~~~~~~L~I   86 (276)
T 3auv_A           12 DIQMTQSPSSLSASVGDRVTITCRASQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGS--G---SGTDFTLTI   86 (276)
T ss_dssp             CCCEEEECSEEECCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEE--E---ETTEEEEEE
T ss_pred             ceeEEeCCCeEEEcCCCCEEEEeEcCCCCCCcEEEEEECCCCCCEEEEEEcCccCCCCCCCEEEe--c---cCCeEEEEE
Confidence            456778888889999999999999988888899999854     12211         1222221  1   122347999


Q ss_pred             eccCCCCCeEEEEEEEcCCCc-eEEEEEEEEeccccC--------CCCCccccCCCeeeecCCCeEEEEEEEeeCC--CC
Q psy7036          74 DDVIETDAGLYKVKAKNKMGE-VAASINLNFSREQID--------GLAPTFLKKPSIRQEDDGKRLLFECRIQADP--AP  142 (254)
Q Consensus        74 ~~~~~~d~G~Y~C~~~~~~~~-~~~~~~l~v~~~~~~--------~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~--~~  142 (254)
                      .+++.+|+|.|.|.+.|..+. ......|.|...+..        ..++.....+....+.+|+.++|.|.+.+.+  .+
T Consensus        87 ~~v~~~DsG~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~p~~~~~~p~~~~v~~G~~v~L~C~~~g~~~~~~  166 (276)
T 3auv_A           87 SSLQPEDFATYYCQQHYTTPPTFGCGTKVEIKGGGGGSIEGRSGGGGSEVQLVESGGGLVQPGGSLRLSCAASGFTISDY  166 (276)
T ss_dssp             SSCCGGGCEEEEEEECSSSSCCCCCCEEEEC-----------------CCEEEEECCEEECTTCCEEEEEEEESSCGGGS
T ss_pred             ccCChhhCEEEEEEEecCCcccccCCEEEEEecCCCccccccccccCcceEEECCCceEecCCCeEEEEEEecCccCCCC
Confidence            999999999999999987543 223355666532100        0111222233456788999999999998876  48


Q ss_pred             eEEEEECC--Eec---c------------cCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcC
Q psy7036         143 TVIWSHSG--VQV---K------------EDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNE  194 (254)
Q Consensus       143 ~~~W~~~~--~~~---~------------~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~  194 (254)
                      .+.|+|++  ...   .            .....++....+.......|.|.+++.+|+|.|+|.+.|.
T Consensus       167 ~v~W~k~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~  235 (276)
T 3auv_A          167 WIHWVRQAPGKCLEWVAGITPAGGYTYYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARFVF  235 (276)
T ss_dssp             EEEEEEECTTCCEEEEEEECGGGCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEECS
T ss_pred             EEEEEEcCCCCCcEEEEEEeccCCccccccccCCcEEEEecCCCcEEEEEECCCChhHCEEEEEEEEcC
Confidence            89999963  111   0            0011122222111111237999999999999999999997

>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens} PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E

Probab=99.90  E-value=4.3e-23  Score=150.06  Aligned_cols=187  Identities=12%  Similarity=0.200  Sum_probs=122.6

Q ss_pred             CeeEeCCCceeecCCCeEEEEEEEeeCCCCceEEEe----------------CCEEeeeC---CcceEEEeecCCcceEE
Q psy7036           9 PSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFR----------------GETQLSED---TRTVMKTTPIGTNKYLV   69 (254)
Q Consensus         9 p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~----------------~~~~~~~~---~~~~~~~~~~~~~~~~~   69 (254)
                      +.+++.|..+.+.+|++|+|.|.+.+.+.+.+.|||                ++......   .++.+...  .  ...+
T Consensus         2 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~--~--~~~~   77 (246)
T 4dzb_B            2 AVVSQHPSWVISKSGTSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHA--S--LTLS   77 (246)
T ss_dssp             CCEEEECSEEEEETTSCEEEEEEESSSCCCSEEEEEECTTSCCEEEEEECTTSCCEECTTCCGGGEEEEEE--E--TTEE
T ss_pred             CccEECCcEEEEeCCCcEEEEeEecCCCceEEEEEEECCCCCcEEEEEEccCCCceecCcccCCcEEEEec--C--CCEE
Confidence            356778888899999999999999988889999998                22222111   22222211  1  2245


Q ss_pred             EEEEeccCCCCCeEEEEEEEcCCC----ceEEEEEEEEeccccCCCCCccc-cCCCeeeecCCCeEEEEEEEeeCCCC--
Q psy7036          70 ALELDDVIETDAGLYKVKAKNKMG----EVAASINLNFSREQIDGLAPTFL-KKPSIRQEDDGKRLLFECRIQADPAP--  142 (254)
Q Consensus        70 ~l~i~~~~~~d~G~Y~C~~~~~~~----~~~~~~~l~v~~~~~~~~~~~~~-~~~~~~~~~~g~~~~l~C~~~~~~~~--  142 (254)
                      +|.|.+++.+|+|.|.|.+.+..+    .......|.|........+|.+. ..+....+..|+.+.|.|.+.+.+++  
T Consensus        78 ~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~i~~~~~~~~~~~~g~~v~L~C~~~g~~p~~~  157 (246)
T 4dzb_B           78 TLTVTSAHPEDSSFYICSARTSGDFGEQFFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHV  157 (246)
T ss_dssp             EEEECSCCGGGCEEEEEEECCSSGGGCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCE
T ss_pred             EEEECCCCHHHCEEEEEEEecCCCCcceEEcCCEEEEEecCCCcccCCceEeecCCchhccCCCcEEEEEEEccCcCCce
Confidence            899999999999999999987543    12234456665321111233332 22333344568999999999886654  


Q ss_pred             eEEEEECCEecccCCcceEEE-------cCCCCceeeEEEEccCCCCC-ceeEEEEEEcCCCcce
Q psy7036         143 TVIWSHSGVQVKEDKRHKFSI-------DKDGHSYFASLEIIDVTIED-AGKYKVTAKNELGESN  199 (254)
Q Consensus       143 ~~~W~~~~~~~~~~~~~~~~~-------~~~~~~~~~~l~i~~~~~~d-~G~y~C~~~~~~~~~~  199 (254)
                      .+.|++++..+..........       ....+...+.|.|.....+| .|.|+|.|.|......
T Consensus       158 ~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~~g~YtC~v~~~~~~~~  222 (246)
T 4dzb_B          158 ELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLSEN  222 (246)
T ss_dssp             EEEEEETTEEECTTEEECSSCEESSTTSTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECCBCTT
T ss_pred             EEEEEECCEECCCCcccccccccccccCCCCCEEEEEEEEECHHHhccCCCeEEEEEEecCCCCc
Confidence            899999998876432211100       01122233568888888888 9999999999866544

>1pz5_B Heavy chain of FAB (SYA/J6); antibody-antigen structure, peptide-carbohydrate mimicry, VA design, immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1m7d_B* 1m71_B* 1m7i_B* 1r24_B 1uz6_F 1uz8_B* 1clz_H*

Probab=99.90  E-value=7.4e-23  Score=146.34  Aligned_cols=183  Identities=13%  Similarity=0.182  Sum_probs=117.3

Q ss_pred             CCCceeecCCCeEEEEEEEeeCC--CCceEEEeCC--EE---e-ee---------------CCcceEEEeecCCcceEEE
Q psy7036          14 KPQLRQEDEGNRLIFECQLLCNP--KPDIVWFRGE--TQ---L-SE---------------DTRTVMKTTPIGTNKYLVA   70 (254)
Q Consensus        14 ~~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~~--~~---~-~~---------------~~~~~~~~~~~~~~~~~~~   70 (254)
                      .|....+.+|++++|.|.+.+.+  .+.+.|+|++  ..   + ..               ..++.+....   .....+
T Consensus         6 ~p~~~~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~---~~~~~~   82 (220)
T 1pz5_B            6 ESGGGLVQPGGSMKLSCVASGFTFSNYWMEWVRQSPEKGLEWVAEIRLKSNNYATHYAESVKGRFTISRDD---SKSSVY   82 (220)
T ss_dssp             EECCEEECTTCCEEEEEEEESSCGGGSEEEEEEEETTTEEEEEEEECCGGGTTCEEECGGGTTTEEEEEEG---GGTEEE
T ss_pred             ccCCEEEcCCCeEEEEEEEcCCccCCccEEEEEeCCCCCcEEEEEEEcCCCccccccCcccCCcEEEEEeC---CCCeEE
Confidence            45677899999999999998765  6789999853  11   1 10               1222222111   122448


Q ss_pred             EEEeccCCCCCeEEEEEEEcCCCce-E--EEEEEEEeccccCCCCCccccCCCeeeecCCCeEEEEEEEeeC-CCC-eEE
Q psy7036          71 LELDDVIETDAGLYKVKAKNKMGEV-A--ASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQAD-PAP-TVI  145 (254)
Q Consensus        71 l~i~~~~~~d~G~Y~C~~~~~~~~~-~--~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~-~~~  145 (254)
                      |.|.+++.+|+|.|.|.+.+..+.. .  ....|.|...  ...+|.+........+.+|+.+.|.|.+.+. |.| .+.
T Consensus        83 L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~--~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~  160 (220)
T 1pz5_B           83 LQMNNLRAEDTGIYYCTRGGAVGAMDYWGQGTSVTVSSA--TTTAPSVYPLVPGCSDTSGSSVTLGCLVKGYFPEPVTVK  160 (220)
T ss_dssp             EEECSCCGGGCEEEEEEEECTTSSEEEECCCEEEEECSS--CCBCCEEEEECCCSCCSCSSSEEEEEEEEEEBSSCCEEE
T ss_pred             EEEccCCHHHCEEEEEEEecCCcccceECCCEEEEEccC--CCCCCeEEEcccccccCCCCcEEEEEEEEEEeCCCeEEE
Confidence            9999999999999999999875321 1  3456666421  1123333322222235679999999999987 888 999


Q ss_pred             EEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcceEEEE
Q psy7036         146 WSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATIS  203 (254)
Q Consensus       146 W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~  203 (254)
                      |++++............ ..+.+...+.|.|.+...+| |.|+|.|.|..+...+++.
T Consensus       161 W~~~~~~~~~~~~~~~~-~~~~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~~~~  216 (220)
T 1pz5_B          161 WNYGALSSGVRTVSSVL-QSGFYSLSSLVTVPSSTWPS-QTVICNVAHPASKVDLIKE  216 (220)
T ss_dssp             EGGGTCCTTEEECCCEE-ETTEEEEEEEEEECGGGTTT-SCCEEEEEEGGGTEEEEEE
T ss_pred             EecCCcccceEEcCCcc-cCCeEEEEEEEEEcchhcCC-ceEEEEEEECCccEeeeec
Confidence            99987642100000011 11112234579999888766 9999999999987666543

>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus}

Probab=99.90  E-value=2.5e-22  Score=146.88  Aligned_cols=185  Identities=15%  Similarity=0.195  Sum_probs=120.6

Q ss_pred             CCeeEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeCC--E---Eee----------eCCcceEEEeecCCcceEEEEE
Q psy7036           8 APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGE--T---QLS----------EDTRTVMKTTPIGTNKYLVALE   72 (254)
Q Consensus         8 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~--~---~~~----------~~~~~~~~~~~~~~~~~~~~l~   72 (254)
                      ...+++.|....+.+|++|+|.|.+.+.+.+.+.|||..  .   .+.          ...++.....   ......+|.
T Consensus         3 ~~~v~q~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~---~~~~~~sL~   79 (256)
T 3tf7_C            3 AQSVTQPDARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGPQMLLKYYSGDPVVQGVNGFEAEFS---KSDSSFHLR   79 (256)
T ss_dssp             -CEEECSCSEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECSTTCEEEEE---TTTTEEEEE
T ss_pred             ccEEEecCceEEecCCCeEEEEEEeCCCCCceEEEEEECCCCCeEEEEEEccCCcccccCCCeEEEEc---CCCCEEEEE
Confidence            346778888899999999999999988899999999832  1   111          1223322211   112344899


Q ss_pred             EeccCCCCCeEEEEEEEcCCCc----eEEEEEEEEeccc--------------cCCCCCccccCCCeeeecCCCeEEEEE
Q psy7036          73 LDDVIETDAGLYKVKAKNKMGE----VAASINLNFSREQ--------------IDGLAPTFLKKPSIRQEDDGKRLLFEC  134 (254)
Q Consensus        73 i~~~~~~d~G~Y~C~~~~~~~~----~~~~~~l~v~~~~--------------~~~~~~~~~~~~~~~~~~~g~~~~l~C  134 (254)
                      |.+++.+|+|.|+|.+.+..+.    ......|.|....              ....++.+...+....+.+|+.++|.|
T Consensus        80 I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C  159 (256)
T 3tf7_C           80 KASVHRSDSAVYFCAVSAKGTGSKLSFGKGAKLTVSPGGGGSGGGGSGGGGSGGGGSEAAVTQSPRNKVTVTGENVTLSC  159 (256)
T ss_dssp             ESSCCGGGCSEEEEEEECTTCTTCEEECCCEEEEEEC---------------------CCEEESCSEEEEETTCCEEECE
T ss_pred             ECCCCcccCEEEEEEEecCCCccceEECCCeEEEEeCCCCCcCCCCcCcccCCCCcCccEEEecCCEEEEeCCCcEEEEE
Confidence            9999999999999999986542    2224566665310              011344555666677788999999999


Q ss_pred             EEeeCCCCeEEEEECCE--ec---cc---C-------CcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCc
Q psy7036         135 RIQADPAPTVIWSHSGV--QV---KE---D-------KRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGE  197 (254)
Q Consensus       135 ~~~~~~~~~~~W~~~~~--~~---~~---~-------~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~  197 (254)
                      .+.+. .+.+.|+|...  ..   ..   .       ...++..... ......|.|.+++.+|+|.|+|.+.|..|.
T Consensus       160 ~~~~~-~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~  235 (256)
T 3tf7_C          160 RQTNS-HNYMYWYRQDTGHELRLIYYSYGAGNLQIGDVPDGYKATRT-TQEDFFLTLESASPSQTSLYFCASSDAPGQ  235 (256)
T ss_dssp             EECSC-CSEEEEEEECTTSCEEEEEEEESTTCCEECSCCTTCEEECC-SSSBCEEEESSCCGGGCEEEEEEEEEETTE
T ss_pred             EcCCC-ceEEEEEEECCCCCeEEEEEEcCCCceecCccCCceEEEeC-CCCeEEEEECCCCHHHCEEEEEEecCCCCc
Confidence            99876 67899998421  10   00   0       0011111111 111237999999999999999999997664

>3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A

Probab=99.90  E-value=1.3e-22  Score=148.15  Aligned_cols=193  Identities=15%  Similarity=0.170  Sum_probs=123.4

Q ss_pred             eEeCCCceeecCCCeEEEEEEEeeCC--CCceEEEeC--CEEee-----------------eCCcceEEEeecCCcceEE
Q psy7036          11 FTQKPQLRQEDEGNRLIFECQLLCNP--KPDIVWFRG--ETQLS-----------------EDTRTVMKTTPIGTNKYLV   69 (254)
Q Consensus        11 ~~~~~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~--~~~~~-----------------~~~~~~~~~~~~~~~~~~~   69 (254)
                      ++..|....+.+|++|+|.|.+.+.+  .+.+.|||.  +..+.                 ...++.+...   .....+
T Consensus         4 ~~~~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~---~~~~~~   80 (253)
T 3uzq_A            4 LLEQSGAELVKPGASVRLSCTASGFNIKDTYMSWVKQRPEQGLEWIGRIDPANGDTKYDPKFQGKATITAD---TSSNTA   80 (253)
T ss_dssp             CEEECCCEEECTTCCEEEEEEECSSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEEE---TTTTEE
T ss_pred             eEecCCCeeecCCCcEEEEEEeeCCcccCceEEEEEeCCCCCCEEEEEEccCCCcceeCCcCCCcEEEEee---cCCCeE
Confidence            45677788999999999999998744  678999982  21110                 0122222221   112244


Q ss_pred             EEEEeccCCCCCeEEEEEEEcCCCce-EEEEEEEEeccc---------cCCCCCccccCCCeeeecCCCeEEEEEEEeeC
Q psy7036          70 ALELDDVIETDAGLYKVKAKNKMGEV-AASINLNFSREQ---------IDGLAPTFLKKPSIRQEDDGKRLLFECRIQAD  139 (254)
Q Consensus        70 ~l~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~l~v~~~~---------~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~  139 (254)
                      +|.|.+++.+|+|.|+|.+.+..+.. .....|.|....         ....++.+...+....+.+|+.++|.|.+.+.
T Consensus        81 ~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~  160 (253)
T 3uzq_A           81 YLHLSSLTSGDTAVYYCSRGWEGFAYWGQGTLVTVSAGGGGSGGGGSGGGGSELVMTQTPASLAVSLGQRATISCRASEN  160 (253)
T ss_dssp             EEEECSCCGGGCEEEEEEECSSSCCEECCCEEEEECSSSCCCCC---------CCEEEECSEEEECTTSCEEEEEEESSC
T ss_pred             EEEeCCCCcccCEEEEEEEeeCCccEECCCcEEEEecCCccccccccCCCcccceEECcCCeEEEeCCCCEEEEEEecCc
Confidence            79999999999999999999865543 245566665310         01123444555666788899999999999888


Q ss_pred             CCC----eEEEEECC--Eecc---c-------CCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcc-eEEE
Q psy7036         140 PAP----TVIWSHSG--VQVK---E-------DKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGES-NATI  202 (254)
Q Consensus       140 ~~~----~~~W~~~~--~~~~---~-------~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~-~~~~  202 (254)
                      +.+    .+.|+|+.  ....   .       ....++.....+  ....|.|.+++.+|+|.|.|.+.|..+.. ....
T Consensus       161 ~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~--~~~~L~I~~v~~~DsG~Y~C~~~n~~~~~fg~gt  238 (253)
T 3uzq_A          161 VDRYGNSFMHWYQQKAGQPPKLLIYRASNLESGIPARFSGSGSR--TDFTLTINPVEADDVATYFCQRSNEVPWTFGGGT  238 (253)
T ss_dssp             CEETTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEET--TEEEEEESSCCGGGCEEEEEEECSSSSCCBCCCE
T ss_pred             cccCCCcEEEEEEECCCCCCEEEEEEccccCCccCCceEEeCCC--CEEEEEECCCCHHHCEEEEEEEccCCCcEECCCE
Confidence            776    89999852  2111   0       000112111111  12379999999999999999999865432 3344


Q ss_pred             EEEEec
Q psy7036         203 SLNFDS  208 (254)
Q Consensus       203 ~~~v~~  208 (254)
                      .|.|..
T Consensus       239 ~l~v~~  244 (253)
T 3uzq_A          239 KLEIKR  244 (253)
T ss_dssp             EEEECC
T ss_pred             EEEEcC
Confidence            566654

>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A

Probab=99.90  E-value=2.3e-22  Score=145.49  Aligned_cols=181  Identities=15%  Similarity=0.198  Sum_probs=115.0

Q ss_pred             eeEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeC--CEEe---e----------e--CCcceEEEeecCCcceEEEEE
Q psy7036          10 SFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRG--ETQL---S----------E--DTRTVMKTTPIGTNKYLVALE   72 (254)
Q Consensus        10 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~--~~~~---~----------~--~~~~~~~~~~~~~~~~~~~l~   72 (254)
                      .+.+.|..+.+.+|++|+|.|. .+.+.+.+.|+|+  +..+   .          .  ..++.+..  .  ......|.
T Consensus         2 ~v~q~p~~~~v~~G~~v~L~C~-~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~--~~~~~~L~   76 (238)
T 2p1y_A            2 AVTQSPRNKVAVTGGKVTLSCN-QTNNHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASR--P--SQENFSLI   76 (238)
T ss_dssp             CEEEECSEEEEETTCCEEEEEE-ECSCCSEEEEEEEETTTEEEEEEEESSTTCCEECSSCTTCEEEC--C--SSSBCEEE
T ss_pred             cceECccceEEeCCCEEEEEee-cCCCCccEEEEEECCCCCcEEEEEEecCcceeCCCccceEEEEc--c--CCceEEEE
Confidence            4667788889999999999999 6788899999995  2111   0          0  12222221  1  11223799


Q ss_pred             EeccCCCCCeEEEEEEEcCCCc-----eEEEEEEEEeccccCCC------CCccccCCCeeeecCCCeEEEEEEEeeCCC
Q psy7036          73 LDDVIETDAGLYKVKAKNKMGE-----VAASINLNFSREQIDGL------APTFLKKPSIRQEDDGKRLLFECRIQADPA  141 (254)
Q Consensus        73 i~~~~~~d~G~Y~C~~~~~~~~-----~~~~~~l~v~~~~~~~~------~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~  141 (254)
                      |.+++.+|+|.|+|.+.+..+.     ......|.|........      .+.+...+....+.+|+.++|.|.+.+.|.
T Consensus        77 I~~v~~~DsG~Y~C~~~~~~g~~~~~~~~~~~~l~V~~~~~~~~p~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~p~  156 (238)
T 2p1y_A           77 LELATPSQTSVYFCASGDLGQTNERLFFGHGTKLSVLGSADDAKKDAAKKDGQVRQSPQSLTVWEGETAILNCSYENSAF  156 (238)
T ss_dssp             ESSCCGGGCEEEEEEEEC------CEEECCCEEEEEECCCHHHHHHHHHHHTCCEEECSEEEEETTSCEEEEEECCCTTC
T ss_pred             EecCCcccCeeEEEEEEeCCCccccceeCCCeEEEEeccCCCCcCCcccceeeEEccCceEEEeCCCeEEEEEEEecCCC
Confidence            9999999999999999987542     11234566643110000      013333455667889999999999999999


Q ss_pred             CeEEEEECCE--e---cc---c----CCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCC
Q psy7036         142 PTVIWSHSGV--Q---VK---E----DKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNEL  195 (254)
Q Consensus       142 ~~~~W~~~~~--~---~~---~----~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~  195 (254)
                      +.+.|+|++.  .   +.   .    ....++....+.......|.|.+++.+|+|.|+|.|.|..
T Consensus       157 ~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~  222 (238)
T 2p1y_A          157 DYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQPGDSATYFCAAIDTN  222 (238)
T ss_dssp             CEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEETTCCGGGCEEEEEEEEETT
T ss_pred             CcEEEEEECCCCCCEEEEEEccCCCcccCCceEEEecCCCCeEEEEEcCCCHHHCEEEEEEEeeCC
Confidence            9999999641  1   10   0    0011111110111112479999999999999999999974

>3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A*

Probab=99.90  E-value=1.8e-22  Score=147.20  Aligned_cols=181  Identities=15%  Similarity=0.196  Sum_probs=116.7

Q ss_pred             CCeeEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeCC-----EEeee---------CCcceEEEeecCCcceEEEEEE
Q psy7036           8 APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGE-----TQLSE---------DTRTVMKTTPIGTNKYLVALEL   73 (254)
Q Consensus         8 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~-----~~~~~---------~~~~~~~~~~~~~~~~~~~l~i   73 (254)
                      .+.+.+.|..+.+.+|++|+|.|.+.+.+.+.+.|+|++     ..+..         ..++..  ...   .....|.|
T Consensus         4 ~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~i~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~--~~~---~~~~~L~I   78 (250)
T 3esu_F            4 DIVLIQSTSSLSASLGDRVTISCRASQDIRNYLNWYQQKPDGTVKLLIYYTSRLQSGVPSRFSG--SGS---GTDYSLTI   78 (250)
T ss_dssp             CCCEECSCSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEE--EEE---TTEEEEEE
T ss_pred             ceeEEecCCEEEeeCCCcEEEEEEecccCCceEEEEEECCCCCCEEEEEEeCCCCCCCCCCEEE--eCC---CCEEEEEE
Confidence            346777888889999999999999998888899999853     11110         112211  111   12347999


Q ss_pred             eccCCCCCeEEEEEEEcCCCce-EEEEEEEEecccc-------------CCCCCccccCCCeeeecCCCeEEEEEEEeeC
Q psy7036          74 DDVIETDAGLYKVKAKNKMGEV-AASINLNFSREQI-------------DGLAPTFLKKPSIRQEDDGKRLLFECRIQAD  139 (254)
Q Consensus        74 ~~~~~~d~G~Y~C~~~~~~~~~-~~~~~l~v~~~~~-------------~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~  139 (254)
                      .+++.+|+|.|.|.+.|..+.. .....|.|.....             ...++.....+....+.+|+.++|.|.+.+.
T Consensus        79 ~~v~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~  158 (250)
T 3esu_F           79 SNLEQEDIGTYFCQQGNTLPWTFGGGTKLEIRRGGGGSGGGGSGGGGSGGGGSEVQLQQSGPELVKPGASVKISCKDSGY  158 (250)
T ss_dssp             SSCCGGGCEEEEEEECSSSSCEECCCEEEEEC------------------------CEECCCEEECTTCCEEEEEECCST
T ss_pred             ccCChhhCEEEEEEEeeCCCceECCCEEEEEECCCCcccccccccccccCcccceEEecCCceEEcCCceEEEEEEecCC
Confidence            9999999999999999875542 2334566643100             0012222333445668899999999999887


Q ss_pred             C--CCeEEEEEC--CEeccc---------------CCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEc
Q psy7036         140 P--APTVIWSHS--GVQVKE---------------DKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKN  193 (254)
Q Consensus       140 ~--~~~~~W~~~--~~~~~~---------------~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~  193 (254)
                      +  .+.+.|+|+  +..+..               ....++....++.....+|.|.+++.+|+|.|.|.+.+
T Consensus       159 ~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~  231 (250)
T 3esu_F          159 AFSSSWMNWVKQRPGQGPEWIGRIYPGDGDTNYNGKFKGKATLTADKSSSTAYMQLSSLTSVDSAVYFCARSG  231 (250)
T ss_dssp             TGGGSEEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEC
T ss_pred             cccCCEEEEEEECCCCCcEEEEEEeccCCccccCccccceEEEEecCCCCeEEEEECCCCcccCEEEEEEEec
Confidence            6  778999997  332210               00012222211111224799999999999999999997

>1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1

Probab=99.90  E-value=1.7e-22  Score=147.81  Aligned_cols=177  Identities=18%  Similarity=0.212  Sum_probs=113.7

Q ss_pred             CCCceeecCCCeEEEEEEEeeCC--CCceEEEeC--CE---Eee-------------eCCcceEEEeecCCcceEEEEEE
Q psy7036          14 KPQLRQEDEGNRLIFECQLLCNP--KPDIVWFRG--ET---QLS-------------EDTRTVMKTTPIGTNKYLVALEL   73 (254)
Q Consensus        14 ~~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~--~~---~~~-------------~~~~~~~~~~~~~~~~~~~~l~i   73 (254)
                      .|....+.+|++|+|.|.+.+.+  .+.+.|+|+  +.   .+.             ...++.+...   ......+|.|
T Consensus         6 ~p~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~---~~~~~~~L~I   82 (257)
T 1f3r_B            6 ESGPGLVRPSETLSLTCTVSGFSLTSFSVSWVRHPSGKGPEWMGRMWYDGYTAYNSALKSRLSISRD---TSKNQVFLKM   82 (257)
T ss_dssp             EECCSEECTTSEEEEEEEEESSCTTTSCCEEEEEETTSCCEEEEEECSSSCEEECSSSSTTEEEEEE---TTTTEEEEEE
T ss_pred             CCCCccccCCceEEEEEEEecccCCCccEEEEEeCCCCCcEEEEEEecCCceeeCcccCCcEEEEEE---CCCCEEEEEE
Confidence            34456799999999999998874  688999985  21   111             0122222211   1123448999


Q ss_pred             eccCCCCCeEEEEEEEcCCC-------ce--EEEEEEEEeccccC---------CCCCccccCCCeeeecCCCeEEEEEE
Q psy7036          74 DDVIETDAGLYKVKAKNKMG-------EV--AASINLNFSREQID---------GLAPTFLKKPSIRQEDDGKRLLFECR  135 (254)
Q Consensus        74 ~~~~~~d~G~Y~C~~~~~~~-------~~--~~~~~l~v~~~~~~---------~~~~~~~~~~~~~~~~~g~~~~l~C~  135 (254)
                      .+++.+|+|.|+|.+.+..|       ..  .....|.|......         ..++.+...+....+.+|+.++|.|.
T Consensus        83 ~~v~~~DsG~Y~C~a~n~~g~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~  162 (257)
T 1f3r_B           83 NSLQTDDTGTYYCTRDLYGGYPLGFWYFDFWGPGTMVTVSSGGGGSGGGGSGGGGSDIKLTQSPSLLSASVGDRVTLSCK  162 (257)
T ss_dssp             ESCCTTCCEEEEEEEESSSSCCSSCCCEEEECCCEEEEECSSCCSSCCSSSCCCCCEECSCEETSEECCCTTCCEEEEEE
T ss_pred             CCCCcccCEEEEEEEcccccCccccccccccCCceEEEEEeCCccccccccCCCccceEEEccCCEEEEcCCCCEEEEEE
Confidence            99999999999999998753       11  13446666532100         00112223344566789999999999


Q ss_pred             EeeCCCCeEEEEE--CCEeccc----C------CcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCC
Q psy7036         136 IQADPAPTVIWSH--SGVQVKE----D------KRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNEL  195 (254)
Q Consensus       136 ~~~~~~~~~~W~~--~~~~~~~----~------~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~  195 (254)
                      +.+.+.+.+.|+|  ++..+..    .      ...++.....+  ....|.|.+++.+|+|.|.|.|.|..
T Consensus       163 ~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~--~~~~L~I~~v~~~D~G~Y~C~a~n~~  232 (257)
T 1f3r_B          163 GSQNINNYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGSG--TDYTLTISSLQPEDVATYFCYQYNNG  232 (257)
T ss_dssp             CSSCCBTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEEB--TEEEEEECSCCGGGCSEEEEEEESSS
T ss_pred             ECCcCCCcEEEEEECCCCCcEEEEEEccCCCCCcCCCEEEecCC--CEEEEEECCCChhhCEEEEEEEeCCC
Confidence            9988888999999  4443210    0      01112111111  12379999999999999999999964

>4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A*

Probab=99.90  E-value=1.4e-22  Score=145.15  Aligned_cols=185  Identities=12%  Similarity=0.122  Sum_probs=116.5

Q ss_pred             CCCceeecCCCeEEEEEEEeeCCCC---ceEEEeCCEEeeeC--C------------cceEEEee----cCCcceEEEEE
Q psy7036          14 KPQLRQEDEGNRLIFECQLLCNPKP---DIVWFRGETQLSED--T------------RTVMKTTP----IGTNKYLVALE   72 (254)
Q Consensus        14 ~~~~~~v~~g~~v~l~C~~~~~~~~---~v~W~~~~~~~~~~--~------------~~~~~~~~----~~~~~~~~~l~   72 (254)
                      .|..+.+.+|++|+|.|.+.+.+.+   .|+|+|++..+...  .            ..+.....    .......++|.
T Consensus         7 vp~~V~~~~G~~v~L~C~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~   86 (225)
T 4fmk_A            7 VLPEVRGRLGGTVELPCHLLPPTTERVSQVTWQRLDGTVVAAFHPSFGVDFPNSQFSKDRLSFVRARPETNADLRDATLA   86 (225)
T ss_dssp             CCSEEEEETTSCEEECCEECSSCCCEEEEEEEECTTSCEEEEEETTTEEECCCTTSCTTTEEECCCSCSCCSSCCBCCEE
T ss_pred             eCCEEEEecCCCEEEEEEEECCCCCceeEEEEEECCCcceEEEecccceeeccccccccceeeeccccccccccCcEEEE
Confidence            4456788999999999999876655   48999976433110  0            00011000    01112234799


Q ss_pred             EeccCCCCCeEEEEEEEcCCCceEE-EEEEEEeccccCCCCCccccCCCeeeecCCCeEEEEEEE-eeCCCCeEEEEECC
Q psy7036          73 LDDVIETDAGLYKVKAKNKMGEVAA-SINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRI-QADPAPTVIWSHSG  150 (254)
Q Consensus        73 i~~~~~~d~G~Y~C~~~~~~~~~~~-~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~~~~~~~~W~~~~  150 (254)
                      |.+++.+|+|.|+|.+.+..+.... ...+.+.      .++.............+..+.+.|.+ .+.|++.+.|++++
T Consensus        87 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~P~~~~~w~~~~  160 (225)
T 4fmk_A           87 FRGLRVEDEGNYTCEFATFPNGTRRGVTWLRVI------AQPENHAEAQEVTIGPQSVAVARCVSTGGRPPARITWISSL  160 (225)
T ss_dssp             ECSCCGGGCEEEEEEEEEETTEEEEEEEEEEEE------BCCEEEEEECCBCCSSSCEEEEEEEEEEEBSCCEEEEECSS
T ss_pred             EccCCHHHCcceEEEEEeCCCcceeeeeeeeee------cCCceeecccceeecceeeeeeeeeecCCCCCCEEEEEECC
Confidence            9999999999999999987765433 3333333      23333222233344556667777764 46788899999987


Q ss_pred             EecccCCcceEEEcCCC-CceeeEEEEccCCCCCceeEEEEEEcCCCcceEEEEEEE
Q psy7036         151 VQVKEDKRHKFSIDKDG-HSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNF  206 (254)
Q Consensus       151 ~~~~~~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~v  206 (254)
                      ..+....  ......++ ....+.|.|.+++.+|.|.|+|.|.|..+.......+.+
T Consensus       161 ~~~~~~~--~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~~~~~~~~~v~l  215 (225)
T 4fmk_A          161 GGEAKDT--QEPGIQAGTVTIISRYSLVPVGRADGVKVTCRVEHESFEEPILLPVTL  215 (225)
T ss_dssp             CCEEEEE--EEECSSTTCEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEEC
T ss_pred             ccccCCc--ceEEecCCCEEEEEEEEEeeCCHHHCCEEEEEEEcCCCCeEEEEEEEE
Confidence            6543221  11122222 233467999999999999999999999887655544444

>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A

Probab=99.90  E-value=1.7e-22  Score=143.84  Aligned_cols=177  Identities=14%  Similarity=0.228  Sum_probs=114.8

Q ss_pred             EeCCCceeecCCCeEEEEEEEeeC-------CCCceEEEeCCEE------eee---------CCcceEEEeecCCcceEE
Q psy7036          12 TQKPQLRQEDEGNRLIFECQLLCN-------PKPDIVWFRGETQ------LSE---------DTRTVMKTTPIGTNKYLV   69 (254)
Q Consensus        12 ~~~~~~~~v~~g~~v~l~C~~~~~-------~~~~v~W~~~~~~------~~~---------~~~~~~~~~~~~~~~~~~   69 (254)
                      ...|..+.+.+|++|+|.|.+.+.       +.+.+.|||++..      +..         ....++....+ .....+
T Consensus         4 ~~~p~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~   82 (214)
T 2zg1_A            4 LQVQKSVTVQEGLCVLVPCSFSYPWRSWYSSPPLYVYWFRDGEIPYYAEVVATNNPDRRVKPETQGRFRLLGD-VQKKNC   82 (214)
T ss_dssp             EECCSEEEEETTCCEEECCEEECCCCCCSCCCCEEEEEEETTCCGGGCCBSEESCTTSCBCTTTTTTEEECSC-GGGTBC
T ss_pred             eeCCcEEEEecCccEEEeeeeecCCcccCCCCceEEEEEecCCCCcccceEecCCcccccCccccCceEEecc-CCCCeE
Confidence            456778899999999999998753       4678999998752      110         11122222211 111233


Q ss_pred             EEEEeccCCCCCeEEEEEEEcCCCceE----EEEEEEEeccccCCCCCccccCCCeeeecCCCeEEEEEEEeeC----CC
Q psy7036          70 ALELDDVIETDAGLYKVKAKNKMGEVA----ASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQAD----PA  141 (254)
Q Consensus        70 ~l~i~~~~~~d~G~Y~C~~~~~~~~~~----~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~----~~  141 (254)
                      +|.|.+++.+|+|.|.|.+.+..+...    ..+.|.|....   .+|.+.. +.  .+.+|+.++|.|.+.+.    |.
T Consensus        83 sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~---~~p~i~~-~~--~~~~G~~v~L~C~~~~~~~~~p~  156 (214)
T 2zg1_A           83 SLSIGDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTALI---EKPDIHF-LE--PLESGRPTRLSCSLPGSCEAGPP  156 (214)
T ss_dssp             CEEECSCCGGGCEEEEEEEEETTTEEEECCSSCEEEEEECCC---CCCEEC---C--CCCTTCCEEEEEECTTCCSCSSC
T ss_pred             EEEEccCCHhhCceEEEEEEcCCCceeeecCCceEEEEecCC---CCCceec-Cc--cccCCCeEEEEEEeccCCCCCCC
Confidence            799999999999999999998753221    35667776321   1333322 11  25689999999998764    78


Q ss_pred             CeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcceEEEEEE
Q psy7036         142 PTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLN  205 (254)
Q Consensus       142 ~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~  205 (254)
                      +.+.|++++.......          ....+.|.|..+..+|.|.|+|.|.|..+.......+.
T Consensus       157 p~v~W~~~~~~~~~~~----------~~~~~~L~i~~~~~~~~g~Y~C~a~n~~~~~~~~~~v~  210 (214)
T 2zg1_A          157 LTFSWTGNALSPLDPE----------TTRSSELTLTPRPEDHGTNLTCQMKRQGAQVTTERTVQ  210 (214)
T ss_dssp             CEEEEESSTTSSSCSS----------CCCSSEEEECCCTTCCSCEEEEEEECC----CCEEEEE
T ss_pred             ceEEEeCCCCccCCCC----------ceeEEEEEEecccHHcCcEEEEEEEeCCCCcceEEEEE
Confidence            8999999885432111          01123799999999999999999999865544443343

>3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens}

Probab=99.90  E-value=4.7e-22  Score=145.43  Aligned_cols=185  Identities=17%  Similarity=0.206  Sum_probs=120.3

Q ss_pred             CCCeeEeCCCceeecCCCeEEEEEEEeeC--CCCceEEEeCC--E---Eeee--------------CCcceEEEeecCCc
Q psy7036           7 FAPSFTQKPQLRQEDEGNRLIFECQLLCN--PKPDIVWFRGE--T---QLSE--------------DTRTVMKTTPIGTN   65 (254)
Q Consensus         7 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~--~~~~v~W~~~~--~---~~~~--------------~~~~~~~~~~~~~~   65 (254)
                      .+|.+...+..+.+.+|++|+|.|.+.+.  +.+.+.|||..  .   .+..              ..++.+....   .
T Consensus         5 ~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~---~   81 (256)
T 3juy_B            5 HHQVQLVQSGAEVKKPGASVKVSCQASGYRFSHFTVHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADT---S   81 (256)
T ss_dssp             --CCEEEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEET---T
T ss_pred             cceEEEEecCCceecCCCeEEEEEEeecccccCceEEEEEECCCCCcEEEEEEEcCCCcEeecccCcceEEEEEec---C
Confidence            45677888999999999999999999873  57789999732  1   1100              1122222111   1


Q ss_pred             ceEEEEEEeccCCCCCeEEEEEEEcC------------CCceEEEEEEEEeccccC---------CCCCccccCCCeeee
Q psy7036          66 KYLVALELDDVIETDAGLYKVKAKNK------------MGEVAASINLNFSREQID---------GLAPTFLKKPSIRQE  124 (254)
Q Consensus        66 ~~~~~l~i~~~~~~d~G~Y~C~~~~~------------~~~~~~~~~l~v~~~~~~---------~~~~~~~~~~~~~~~  124 (254)
                      ....+|.|.+++.+|+|.|.|.+.+.            .........|.|......         ..++.+...+....+
T Consensus        82 ~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  161 (256)
T 3juy_B           82 ANTAYMELRSLRSADTAVYYCARVGEWGWDDSPYDNYYMDVWGKGTTVIVSSGGGGSGGGGSGGGGSEIVLTQAPGTLSL  161 (256)
T ss_dssp             TTEEEEEECSCCGGGCEEEEEEECCCCCTTCCTTTTCSCCEECCCEEEEECSCC----------CCCCCCEEEECSEEEE
T ss_pred             CCEEEEEECCCCcccCEEEEEeEEeccccccccccccceeEECCceEEeecCCcccccccccCCCcceeEEEecCCeEEE
Confidence            22347999999999999999999986            222334556777542110         013445555667788


Q ss_pred             cCCCeEEEEEEEeeCCC-CeEEEEEC--CEeccc----------CCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEE
Q psy7036         125 DDGKRLLFECRIQADPA-PTVIWSHS--GVQVKE----------DKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTA  191 (254)
Q Consensus       125 ~~g~~~~l~C~~~~~~~-~~~~W~~~--~~~~~~----------~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~  191 (254)
                      .+|+.++|.|.+.+.+. +.+.|+|.  +.....          ....++....++.  ...|.|.+++.+|+|.|.|.+
T Consensus       162 ~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~--~~~L~I~~v~~~DsG~Y~C~~  239 (256)
T 3juy_B          162 SPGERATFSCRSSHSIRSRRVAWYQHKPGQAPRLVIHGVSNRASGISDRFSGSGSGT--DFTLTITRVEPEDFALYYCQV  239 (256)
T ss_dssp             CTTSCEEEEEEESSCCTTCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETT--EEEEEESSCCGGGCSEEEEEE
T ss_pred             eCCCCEEEEEEECCCcCCeeEEEEEECCCCCcEEEEEecCccCCccCCcEEEEccCC--EEEEEECCCCHhHCEEEEEEE
Confidence            89999999999988776 89999983  221110          0011111111111  236999999999999999999


Q ss_pred             EcCCC
Q psy7036         192 KNELG  196 (254)
Q Consensus       192 ~~~~~  196 (254)
                      .|...
T Consensus       240 ~~~~~  244 (256)
T 3juy_B          240 YGASS  244 (256)
T ss_dssp             CCSSC
T ss_pred             eeCCC
Confidence            88543

>1mju_H Immunoglobulin MS6-12; catalytic antibody, ester hydrolysis, esterolytic, FAB, immune system; 1.22A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mjj_B 1mie_H 1mj7_H* 1mj8_H 1mh5_B* 4aeh_H 2y5t_A 2vwe_E 2op4_H 2ntf_H 3loh_C 1e4x_H 2vl5_A 1e4x_I 1e4w_H 3opz_H 3oz9_H 1plg_H 1hi6_B 1cfn_B ...

Probab=99.90  E-value=2.2e-22  Score=144.52  Aligned_cols=188  Identities=12%  Similarity=0.195  Sum_probs=115.6

Q ss_pred             eCCCceeecCCCeEEEEEEEeeCC--CCceEEEeCC--EE---ee--e------------CCcceEEEeecCCcceEEEE
Q psy7036          13 QKPQLRQEDEGNRLIFECQLLCNP--KPDIVWFRGE--TQ---LS--E------------DTRTVMKTTPIGTNKYLVAL   71 (254)
Q Consensus        13 ~~~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~~--~~---~~--~------------~~~~~~~~~~~~~~~~~~~l   71 (254)
                      ..|....+.+|++|+|.|.+.+.+  .+.+.|||++  ..   +.  .            ..++.+...  . .....+|
T Consensus         5 ~qp~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~--~-~~~~~sL   81 (227)
T 1mju_H            5 QQPGAELVKPGASVKLSCKASGYTFTNYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVD--T-SSSTAYM   81 (227)
T ss_dssp             ECCSEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEE--T-TTTEEEE
T ss_pred             cCCCCeEEcCCCCEEEEEEecCCccccceEEEEEeCCCCCcEEEEEEeccCCceeeCCccCCcEEEEEe--C-CCCeEEE
Confidence            456677899999999999998766  6789999853  21   10  0            122222211  1 1234589


Q ss_pred             EEeccCCCCCeEEEEEEEcCCCc-eEEEEEEEEeccccCCCCCccccCCCeeeecCCCeEEEEEEEeeC-CCC-eEEEEE
Q psy7036          72 ELDDVIETDAGLYKVKAKNKMGE-VAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQAD-PAP-TVIWSH  148 (254)
Q Consensus        72 ~i~~~~~~d~G~Y~C~~~~~~~~-~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~-~~~W~~  148 (254)
                      .|.+++.+|+|.|.|.+.+..+. ......|.|...  ...+|.+........+..|+.++|.|.+.+. |.+ .+.|++
T Consensus        82 ~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~L~V~~~--~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~  159 (227)
T 1mju_H           82 QLSSLTSDDSAVYYCANKLGWFPYWGQGTLVTVSAA--KTTAPSVYPLAPVCGDTSGSSVTLGCLVKGYFPEPVTLTWNS  159 (227)
T ss_dssp             EECSCCGGGCEEEEEEEEETTEEEECCCEEEEECSS--CCBCCEEEEECCCC------CEEEEEEEEEEBSSCCEEEEGG
T ss_pred             EECCCCcccCEEEEEEECCCCceEEcCcEEEEEcCC--CCCCCEEEEecCCccccCCCcEEEEEEeecEeCCCeEEEEec
Confidence            99999999999999999875321 112346676531  1123333222112235579999999999885 666 899999


Q ss_pred             CCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcceEEEEEEEe
Q psy7036         149 SGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFD  207 (254)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~v~  207 (254)
                      ++..+......... ..+.+...+.|.|.....+| |.|+|.|.|..+.......+.+.
T Consensus       160 ~g~~~~~~~~~~~~-~~g~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~~~~~~~~  216 (227)
T 1mju_H          160 GSLSSGVHTFPAVL-QSDLYTLSSSVTVTSSTWPS-QSITCNVAHPASSTKVDKKIEPR  216 (227)
T ss_dssp             GTBCTTEEECCCEE-ETTEEEEEEEEEECTTTTTT-SCCEEEEEEGGGTEEEEEECCCC
T ss_pred             CCCcCCcEECCcee-cCCeEEEEEEEEEchhhcCC-CeEEEEEEECCCCcceEEEeCCC
Confidence            98764311111111 11212234579999988888 99999999977665555555443

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}

Probab=99.89  E-value=2.7e-24  Score=163.64  Aligned_cols=182  Identities=16%  Similarity=0.253  Sum_probs=132.0

Q ss_pred             eeecCCCeEEEEEE-----EeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcCC
Q psy7036          18 RQEDEGNRLIFECQ-----LLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKM   92 (254)
Q Consensus        18 ~~v~~g~~v~l~C~-----~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~   92 (254)
                      ..+.+|+.+.|.|.     +.+.|.+.+.|++++..+..... +.......     ..|.|.+++..|+|.|+|.+.|..
T Consensus       130 ~~~~~g~~v~l~C~~~~~~~~g~p~~~v~W~k~g~~~~~~~~-~~~~~~~~-----~~L~i~~v~~~d~G~Y~C~a~n~~  203 (339)
T 3o4o_C          130 QILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNE-KFLSVRGT-----THLLVHDVALEDAGYYRCVLTFAH  203 (339)
T ss_dssp             EEEETTSCEEEECCSCTTTCCSSSCCCBCCEESSCBCCTTCS-SEEECTTS-----SEEEESSCCGGGCEEEEEEEECCB
T ss_pred             eEEECCCCEEEEecCCcccccCCCCceEEEecCCeeCCCCCc-eeEEcCCc-----ceEEEcccCHhhCeEEEEEEEECC
Confidence            46789999999999     77788999999999988765422 22222111     179999999999999999999987


Q ss_pred             Cc----eEEEEEEEEeccccCCCCCccccCCCeeeecCCCeEEEEEEE---eeCC-CCeEEEEECCEecccCCc------
Q psy7036          93 GE----VAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRI---QADP-APTVIWSHSGVQVKEDKR------  158 (254)
Q Consensus        93 ~~----~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~---~~~~-~~~~~W~~~~~~~~~~~~------  158 (254)
                      +.    ....+.|.|..... ..+|.+...+....+..|+.+.|.|.+   .+.| .+.+.|++++..+.....      
T Consensus       204 g~~~~~~~~~~~l~V~~~~~-~~~P~i~~~~~~~~v~~G~~v~L~C~~~~~~g~P~~~~v~W~~~g~~~~~~~~~~~~~~  282 (339)
T 3o4o_C          204 EGQQYNITRSIELRIKKKKE-ETIPVIISPLKTISASLGSRLTIPCKVFLGTGTPLTTMLWWTANDTHIESAYPGGRVTE  282 (339)
T ss_dssp             TTBCCEEEEEEEEEEECCCC-CCCCEECCCSCCCCCCCCSCCCCCCCEEESSSCCSSCEEEEESSSSCSSSSSCSSSCEE
T ss_pred             CCeEEEEEEEEEEEEEcCCC-CCCCEEecCCceeEeccCCCEEEEEEEECCCCCCCCceEEEEECCeeccccccccccee
Confidence            63    45567777764221 124555555555677889999999999   7888 789999999877643211      


Q ss_pred             -ceEEEcCCCC-ceeeEEEEccCCCCCc-eeEEEEEEcCCCcceEEEEEEE
Q psy7036         159 -HKFSIDKDGH-SYFASLEIIDVTIEDA-GKYKVTAKNELGESNATISLNF  206 (254)
Q Consensus       159 -~~~~~~~~~~-~~~~~l~i~~~~~~d~-G~y~C~~~~~~~~~~~~~~~~v  206 (254)
                       .......++. ...+.|.|.++..+|. |.|+|.|.|..|.......+.+
T Consensus       283 ~~~~~~~~~g~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~~G~~~~~~~~~~  333 (339)
T 3o4o_C          283 GPRQEYSENNENYIEVPLIFDPVTREDLHMDFKCVVHNTLSFQTLRTTVKE  333 (339)
T ss_dssp             CCCEECCCSSSCEEEECCEECSSCCCSCCCCCEEEEEETTEEECCBCCCCC
T ss_pred             cceEEecccCceEEEEEEEEEEechhhcCccEEEEEEeccCceEEEEEhhH
Confidence             1112222222 2334799999999997 9999999999998877665543

>2fbj_H IGA-kappa J539 FAB (heavy chain); immunoglobulin; HET: NAG FUC; 1.95A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mcp_H 2mcp_H*

Probab=99.89  E-value=6.7e-22  Score=141.29  Aligned_cols=181  Identities=15%  Similarity=0.203  Sum_probs=116.8

Q ss_pred             CCCceeecCCCeEEEEEEEeeCC--CCceEEEeCC--E---Eee-e-----------CCcceEEEeecCCcceEEEEEEe
Q psy7036          14 KPQLRQEDEGNRLIFECQLLCNP--KPDIVWFRGE--T---QLS-E-----------DTRTVMKTTPIGTNKYLVALELD   74 (254)
Q Consensus        14 ~~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~~--~---~~~-~-----------~~~~~~~~~~~~~~~~~~~l~i~   74 (254)
                      .|....+.+|++|+|.|.+.+.+  .+.+.|||..  .   .+. .           ....++....+ ......+|.|.
T Consensus         6 q~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~-~~~~~~~L~I~   84 (220)
T 2fbj_H            6 ESGGGLVQPGGSLKLSCAASGFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRD-NAKNSLYLQMS   84 (220)
T ss_dssp             EECCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEC-SSSCEEEEEEC
T ss_pred             cCCCeEecCCCcEEEEEEecCccCCCceEEEEEECCCCCeEEEEEEccCCCceecCCccCCcEEEEee-CCCCEEEEEEC
Confidence            34567899999999999998755  5789999843  1   111 0           01112222221 12234589999


Q ss_pred             ccCCCCCeEEEEEEEcCCCc---eEEEEEEEEeccccCCCCCccccCCCeeeecCCCeEEEEEEEeeC-CC--CeEEEEE
Q psy7036          75 DVIETDAGLYKVKAKNKMGE---VAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQAD-PA--PTVIWSH  148 (254)
Q Consensus        75 ~~~~~d~G~Y~C~~~~~~~~---~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~--~~~~W~~  148 (254)
                      +++.+|+|.|.|.+.+..+.   ......|.|....  ..+|.+...+ ...+..|+.++|.|.+.+. |.  +.+.|++
T Consensus        85 ~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~~--~~~P~v~~~~-~~~~~~g~~v~L~C~~~g~~P~~~~~v~W~~  161 (220)
T 2fbj_H           85 KVRSEDTALYYCARLHYYGYNAYWGQGTLVTVSAES--ARNPTIYPLT-LPPALSSDPVIIGCLIHDYFPSGTMNVTWGK  161 (220)
T ss_dssp             SCCGGGCEEEEEEEEETTTEEEEECCCEEEEECSSC--CBCCEEEEEC-CCSSSCCSSEEEEEEEEEEBSCCCEEEEESC
T ss_pred             CCChhhCEEEEEEEeccccccceecCCEEEEecCCC--CCCCEEEEee-cccccCCCcEEEEEEEEeEECCCcEEEEEec
Confidence            99999999999999986542   1234567775311  1234333222 2235679999999999886 65  6899999


Q ss_pred             CCEecccCCcceEEEcCCC-CceeeEEEEccCCCCCceeEEEEEEcCCCcce
Q psy7036         149 SGVQVKEDKRHKFSIDKDG-HSYFASLEIIDVTIEDAGKYKVTAKNELGESN  199 (254)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~  199 (254)
                      ++..+..... ......++ +...+.|.|.....+|.|.|+|.|.|..+...
T Consensus       162 ~~~~~~~~~~-~~~~~~~g~~~~~s~L~i~~~~~~d~g~ytC~v~n~~~~~~  212 (220)
T 2fbj_H          162 SGKDITTVNF-PPALASGGRYTMSNQLTLPAVECPEGESVKCSVQHDSNPVQ  212 (220)
T ss_dssp             CCSSCEEEEC-CCEECSSSCEEEEEEEEECGGGSCTTCEEEEEEEETTSCCE
T ss_pred             CCEecceEec-CceECCCCCEEEEEEEEECHHHcCCCCeEEEEEEcCCCceE
Confidence            9876521111 11112222 23345799998888899999999999887644

>1l6x_A Immunoglobulin gamma-1 heavy chain constant regio; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2iwg_A* 3v7m_A* 3d6g_A* 3agv_A* 1oqo_A* 1oqx_A* 3v95_A* 2wah_A* 3sgj_A* 3sgk_A* 2dtq_A* 2dts_A* 3ave_A* 3ay4_A* 3do3_A* 2gj7_A* 1t83_A* 1t89_A* 1dn2_A* 3dnk_A ...

Probab=99.89  E-value=6.8e-23  Score=145.13  Aligned_cols=188  Identities=14%  Similarity=0.191  Sum_probs=110.2

Q ss_pred             CeeEeCCCceee--cCCCeEEEEEEEeeCC----CCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCe
Q psy7036           9 PSFTQKPQLRQE--DEGNRLIFECQLLCNP----KPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAG   82 (254)
Q Consensus         9 p~~~~~~~~~~v--~~g~~v~l~C~~~~~~----~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G   82 (254)
                      |.+...|....+  .+|++++|.|.+.|.+    ...|+|+|++..+............++.......|.|......|+|
T Consensus         2 P~v~~~pps~~~~~~~G~~v~L~C~~~g~~p~~~~~~v~W~k~~~~~~~~~~~~~~~~~~g~~~~~~~l~i~~~d~~d~g   81 (207)
T 1l6x_A            2 PSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGK   81 (207)
T ss_dssp             CEEEEECCCHHHHHCTTSCCEEEEEEEEECSSSCCCEEEEEETTEEECCCEECCCEECTTSCEEEEEEEECCHHHHHTTC
T ss_pred             CeEEEeCcChHHheecCCceEEEEEEecccCCCCCeEEEEEECCccccCcccCCceeccCCcEEEEEEEEEEHHHccCCc
Confidence            444443433333  7999999999998854    3589999999877543211111111222122223445444455699


Q ss_pred             EEEEEEEcCCCceEEEEEEEEeccccCCCCCccccCCCeeeecCCCeEEEEEEEeeC-CC-CeEEEEECCEecccCCcce
Q psy7036          83 LYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQAD-PA-PTVIWSHSGVQVKEDKRHK  160 (254)
Q Consensus        83 ~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~-~~~~W~~~~~~~~~~~~~~  160 (254)
                      .|+|.+.|..+.......+.+.  .....+|.+...........|..+.|.|.+.+. |. +.+.|+++|..+.......
T Consensus        82 ~Y~C~a~n~~~~~~~~~~v~~~--~~~~~~P~v~~~~~~~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~  159 (207)
T 1l6x_A           82 EYKCKVSNKALPAPIEKTISKA--KGQPREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTP  159 (207)
T ss_dssp             CEEEEEECTTSSSCEEEEECCC--CSCCBCCEEEEECCCGGGGGSSEEEEEEEEEEEBSSCCEEEEEETTEEECCEEECC
T ss_pred             eEEEEEEcCcCCcceEEEeccC--CCCCcCCEEEEECCChHHhcCCcEEEEEEEeCeECCCeEEEEEECCeeccCccccC
Confidence            9999999987754223233210  011134443322221112245669999999985 44 4899999998875322222


Q ss_pred             EEEcCCCC-ceeeEEEEccCCCCCceeEEEEEEcCCCcc
Q psy7036         161 FSIDKDGH-SYFASLEIIDVTIEDAGKYKVTAKNELGES  198 (254)
Q Consensus       161 ~~~~~~~~-~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~  198 (254)
                      .....++. ...+.|.|.....+|.|.|+|.|.|.....
T Consensus       160 ~~~~~~gt~~~~s~l~i~~~~~~~~g~YtC~a~n~~l~~  198 (207)
T 1l6x_A          160 PVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEALHN  198 (207)
T ss_dssp             CEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTTSGG
T ss_pred             ceECCCCCEEEEEEEEECHHHcCCCCEEEEEEEcCCcCC
Confidence            22233432 334556676666678999999999987654

>1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2 b.1.1.2 PDB: 1i1a_D*

Probab=99.89  E-value=6.9e-23  Score=147.95  Aligned_cols=193  Identities=13%  Similarity=0.176  Sum_probs=118.1

Q ss_pred             CCCee-EeCCCcee-ecCCCeEEEEEEEeeC---CCC-ceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCC
Q psy7036           7 FAPSF-TQKPQLRQ-EDEGNRLIFECQLLCN---PKP-DIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETD   80 (254)
Q Consensus         7 ~~p~~-~~~~~~~~-v~~g~~v~l~C~~~~~---~~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d   80 (254)
                      ..|.+ ...+.... +.+|++++|.|.+.+.   |.+ .|+|||++..+.............+.....+.|.|.+++..|
T Consensus        14 ~~P~v~~~pp~~~~~v~~G~~v~L~C~~~g~~~~P~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~D   93 (239)
T 1i1c_A           14 EVSSVFIFPPKTKDVLGGGLTPKVTCVVVDISQNDPEVRFSWFIDDVEVHTAQTHAPEKQSNSTLRSVSELPIVERDWLN   93 (239)
T ss_dssp             ---CEEEECCCHHHHTTSSSCCEEEEEEEEECTTCCCCEEEEEESSCEECCCEECCCEECTTSCEEEEEEEECCHHHHHT
T ss_pred             cCCEEEEECCChHHhcccCCcEEEEEEEecCccCCCCCEEEEEECCccccCcccccceEcCCCcEEEEEEEEEEhhHccC
Confidence            34544 44444433 7899999999999876   665 899999986654321111111112222344589999999999


Q ss_pred             CeEEEEEEEcCCCceEEEEEEEEeccccCCCCCccccCCCeeeecCCCeEEEEEEEeeC-CC-CeEEEEECCEecccCCc
Q psy7036          81 AGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQAD-PA-PTVIWSHSGVQVKEDKR  158 (254)
Q Consensus        81 ~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~-~~~~W~~~~~~~~~~~~  158 (254)
                      +|.|+|.+.+..+.......+...  .....+|.+...+.......|+.+.|.|.+.++ |. ..+.|+++|..+.....
T Consensus        94 ~g~Y~C~~~~~~~~~~~~~~v~~~--~~~~~~P~v~v~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~  171 (239)
T 1i1c_A           94 GKTFKCKVNSGAFPAPIEKSISKP--EGTPRGPQVYTMAPPKEEMTQSQVSITCMVKGFYPPDIYTEWKMNGQPQENYKN  171 (239)
T ss_dssp             TCCEEEEEECSSSSSCEEEEECCC--SSCCBCCEEEEECCCGGGGGSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEE
T ss_pred             CCeEEEEEecccCCCCcEEEEecC--CCCCcCCEEEEECCChHHhcCCcEEEEEEEeeeECCCeEEEEEECCEECCCcee
Confidence            999999999987754222222210  011234443322222222347889999999884 44 47999999998754322


Q ss_pred             ceEEEcCCCC-ceeeEEEEccCCCCCceeEEEEEEcCCCcceEE
Q psy7036         159 HKFSIDKDGH-SYFASLEIIDVTIEDAGKYKVTAKNELGESNAT  201 (254)
Q Consensus       159 ~~~~~~~~~~-~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~  201 (254)
                      .......++. ...+.|.|.....+|.|.|+|.|.|........
T Consensus       172 ~~~~~~~dgt~~~~s~l~v~~~~~~~~g~YtC~v~n~~l~~~~~  215 (239)
T 1i1c_A          172 TPPTMDTDGSYFLYSKLNVKKETWQQGNTFTCSVLHEGLENEHT  215 (239)
T ss_dssp             CCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTTSGGGEE
T ss_pred             cCceECCCCCEEEEEEEEEChhhcCCCCEEEEEEECCCCCCCcE
Confidence            2222333432 334556676655667999999999987654433

>2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid factor IGG1-FC, immunoglobulin C region, membrane, glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=99.89  E-value=3.7e-23  Score=149.27  Aligned_cols=188  Identities=16%  Similarity=0.193  Sum_probs=118.8

Q ss_pred             CeeEeCCCceeecCCCeEEEEEEEeeCC-CC-ceEEEeCC--EEe---ee-------CCcceEEEeecCCcceEEEEEEe
Q psy7036           9 PSFTQKPQLRQEDEGNRLIFECQLLCNP-KP-DIVWFRGE--TQL---SE-------DTRTVMKTTPIGTNKYLVALELD   74 (254)
Q Consensus         9 p~~~~~~~~~~v~~g~~v~l~C~~~~~~-~~-~v~W~~~~--~~~---~~-------~~~~~~~~~~~~~~~~~~~l~i~   74 (254)
                      +.+.+ |....+.+|++++|.|.+.+.+ .+ .+.|||++  ..+   ..       ....++....   ......|.|.
T Consensus        21 ~~v~~-p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~---~~~~~~L~I~   96 (234)
T 2j6e_L           21 SVLTQ-PPSASGTPGQRVTISCSGSSSNIGSNYVYWYQQLPGTAPKLLIYRNNQRPSGVPDRFSGSK---SGTSASLAIS   96 (234)
T ss_dssp             CCCBC-CSCCCBCTTCEEEEEEECCTTTTTTSCCEEEEECSSSCCEEEEBTTTBCCSSSCTTEEEEE---ETTEEEEEEE
T ss_pred             cEEeC-CCcEEeeCCCcEEEEEEecCCCCCCCeEEEEEecCCCCcEEEEECccccCCCccccEEEEe---cCCeEEEEEC
Confidence            34455 7778899999999999998744 34 69999863  211   10       0011121111   1123489999


Q ss_pred             ccCCCCCeEEEEEEEcCCCc---eEEEEEEEEeccccCCCCCccccCCCeeeecCCCeEEEEEEEeeCCC--CeEEEEEC
Q psy7036          75 DVIETDAGLYKVKAKNKMGE---VAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQADPA--PTVIWSHS  149 (254)
Q Consensus        75 ~~~~~d~G~Y~C~~~~~~~~---~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~--~~~~W~~~  149 (254)
                      +++.+|+|.|+|.+.+..+.   ......|.|....  ..+|.+...........|+.++|.|.+.+.++  +.+.|+++
T Consensus        97 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~--~~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~  174 (234)
T 2j6e_L           97 GLRSEDEADYYCATWDDSLSAVIFGGGTKLTVLGQP--KAAPSVTLFPPSSEELQANKATLVCLISDFFPGAVTVAWKAD  174 (234)
T ss_dssp             SCCSTTCSEEEEEEEETTTTEEEECCCBCCCBCCCC--CCCCCCCEECCCHHHHTTSCCCEEECCCBCSSCCCEEEEEET
T ss_pred             CCCHHHCEEEEEEEEcCCcceeEecCCEEEEEecCC--CCCCcccccCCChhHhcCCceEEEEEEEEEcCCceEEEEEEC
Confidence            99999999999999988762   1223445553211  12343332222222345889999999988644  38999999


Q ss_pred             CEecccCCcc-eEEEcCCC-CceeeEEEEccCCCCCceeEEEEEEcCCCcceEEE
Q psy7036         150 GVQVKEDKRH-KFSIDKDG-HSYFASLEIIDVTIEDAGKYKVTAKNELGESNATI  202 (254)
Q Consensus       150 ~~~~~~~~~~-~~~~~~~~-~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~  202 (254)
                      +..+...... ......++ +...+.|.|.+...+|.|.|+|.|.|......+++
T Consensus       175 g~~l~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~  229 (234)
T 2j6e_L          175 GAPVKAGVETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTV  229 (234)
T ss_dssp             TEECCSSEEECCCCCCTTSCCBCCEEECCCGGGTTTSCCEEEEEEBTTBCCCEEE
T ss_pred             CEECCCCccccCceECCCCCEEEEEEEEECHHHcCCCCeEEEEEEeCCCceEEec
Confidence            9987543211 01111122 22345799999999999999999999877655443

>1dee_B IGM RF 2A2; FAB-IBP complex 2.7A resolution binding outside the antigen combining site superantigen FAB VH3 specificity; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1hez_B 1adq_H

Probab=99.89  E-value=1.3e-21  Score=140.01  Aligned_cols=186  Identities=11%  Similarity=0.150  Sum_probs=116.2

Q ss_pred             CCCceeecCCCeEEEEEEEeeCC--CCceEEEeCC--E---Eeee------------CCcceEEEeecCCcceEEEEEEe
Q psy7036          14 KPQLRQEDEGNRLIFECQLLCNP--KPDIVWFRGE--T---QLSE------------DTRTVMKTTPIGTNKYLVALELD   74 (254)
Q Consensus        14 ~~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~~--~---~~~~------------~~~~~~~~~~~~~~~~~~~l~i~   74 (254)
                      .|..+.+.+|++|+|.|.+.+.+  .+.+.|||.+  .   .+..            ....++....+. .....+|.|.
T Consensus         6 qp~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~-~~~~~sL~I~   84 (223)
T 1dee_B            6 ESGGGVVQPGKSLRLSCAASGFTFSGYGMHWVRQAPGKGLEWVALISYDESNKYYADSVKGRFTISRDN-SKNTLYLQMN   84 (223)
T ss_dssp             EECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSCCEEECTTTBTTEEEEEET-TTTEEEEEEC
T ss_pred             cCCCEEEcCCCcEEEEEEecCcccCCceEEEEEECCCCCcEEEEEEecCCCccccCcccCCeEEEEecC-CCCEEEEEEC
Confidence            34577899999999999998755  4789999843  1   1110            011122222111 1224589999


Q ss_pred             ccCCCCCeEEEEEEEcCCC----c--eEEEEEEEEeccccCCCCCccccCCCeeeecCCCeEEEEEEEeeC-CCC-eEEE
Q psy7036          75 DVIETDAGLYKVKAKNKMG----E--VAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQAD-PAP-TVIW  146 (254)
Q Consensus        75 ~~~~~d~G~Y~C~~~~~~~----~--~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~-~~~W  146 (254)
                      +++.+|+|.|.|.+.+..+    .  ......|.|...  ...+|.+........+..|+.++|.|.+.+. |.+ .+.|
T Consensus        85 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~--~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W  162 (223)
T 1dee_B           85 SLRAEDTAVYYCAKVKFYDPTAPNDYWGQGTLVTVSSG--SASAPTLFPLVSCENSNPSSTVAVGCLAQDFLPDSITFSW  162 (223)
T ss_dssp             SCCGGGCEEEEEEEESSSSTTCCEEEECCCEEEEECSS--CCBCCEEEEEECTTCCCSSSEEEEEEEEEEEBSSCCEEEE
T ss_pred             CCCHHHCEEEEEEEeccccCcccceeecCcEEEEEccC--CCCCCEEEEecCCcccCCCCcEEEEEEEEEEeCCCeEEEe
Confidence            9999999999999998653    1  112346777521  1123333221111224578999999999886 766 8999


Q ss_pred             EE-CCEecccCCcceEEEcCCCCceeeEEEEccCCC--CCceeEEEEEEcCCCcceEEE
Q psy7036         147 SH-SGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTI--EDAGKYKVTAKNELGESNATI  202 (254)
Q Consensus       147 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~--~d~G~y~C~~~~~~~~~~~~~  202 (254)
                      ++ ++..+..............+...+.|.|.....  +|.|.|+|.|.|..+.....+
T Consensus       163 ~~~~g~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~d~g~y~C~v~n~~~~~~~~~  221 (223)
T 1dee_B          163 KYKNNSDISSTRGFPSVLRGGKYAATSQVLLPSKDVAQGTNEHVVCKVQHPNGNKEKDV  221 (223)
T ss_dssp             EETTSCBCSCEEECCCEEETTEEEEEEEEEEECTTTTSTTCCEEEEEEECTTCCEEEEE
T ss_pred             EccCCCccceeEECCccccCCeEEEEEEEEEcHHHhccCCCCEEEEEEEeCCCCCcccc
Confidence            99 887764310000001111222345788887766  789999999999988765544

>3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D

Probab=99.89  E-value=8.4e-22  Score=144.09  Aligned_cols=190  Identities=15%  Similarity=0.228  Sum_probs=120.2

Q ss_pred             CCCceeecCCCeEEEEEEEeeCC--CCceEEEeCC--E---Ee-e-------------eCCcceEEEeecCCcceEEEEE
Q psy7036          14 KPQLRQEDEGNRLIFECQLLCNP--KPDIVWFRGE--T---QL-S-------------EDTRTVMKTTPIGTNKYLVALE   72 (254)
Q Consensus        14 ~~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~~--~---~~-~-------------~~~~~~~~~~~~~~~~~~~~l~   72 (254)
                      .+....+.+|++|+|.|.+.+.+  .+.+.|||..  .   .+ .             ...++.+....   ......|.
T Consensus         8 ~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~---~~~~~~L~   84 (256)
T 3umt_A            8 QSGLELVKPGASVKISCKTSGYTFTEYTMHWVKQSHGKSLEWIGGINPNNGGTSYNQKFKGKAILTVDK---SSSTAYLE   84 (256)
T ss_dssp             ECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEG---GGTEEEEE
T ss_pred             ccCceEEcCCCCEEEEEEEecccccccEEEEEEECCCCCcEEEEEEeccCCcccccccccceEEEEEec---CCCEEEEE
Confidence            34456799999999999998755  6789999732  1   11 0             01222222111   12234799


Q ss_pred             EeccCCCCCeEEEEEEEcC----CCceEEEEEEEEeccc----------cCCCCCccccCCCeeeecCCCeEEEEEEEee
Q psy7036          73 LDDVIETDAGLYKVKAKNK----MGEVAASINLNFSREQ----------IDGLAPTFLKKPSIRQEDDGKRLLFECRIQA  138 (254)
Q Consensus        73 i~~~~~~d~G~Y~C~~~~~----~~~~~~~~~l~v~~~~----------~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~  138 (254)
                      |.+++.+|+|.|.|.+.+.    .+.......|.|....          ....++.+...+....+.+|+.++|.|.+.+
T Consensus        85 I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~  164 (256)
T 3umt_A           85 LRSLTSEDSAVYYCARDDRYPAWFAYWGQGTTVTVSSGGGGSGGGGSGGGGSTDIQLTQSPSSLSASLGERVSITCRASQ  164 (256)
T ss_dssp             ECSCCGGGCEEEEEEECCSTTCCSCEECCCEEEEECC---------------CCCCEEEECSEEEECTTCCEEEEEEESS
T ss_pred             ECCCCcccCEEEEEEEccCCCccccEECCCEEEEEcCCCccccCcccCCCCccccEEEcCCCeEEEECCCCEEEEEEEec
Confidence            9999999999999999987    2223345667775310          0001445555566678889999999999999


Q ss_pred             CCCCeEEEEECC--Eecc----------cCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcc-eEEEEEE
Q psy7036         139 DPAPTVIWSHSG--VQVK----------EDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGES-NATISLN  205 (254)
Q Consensus       139 ~~~~~~~W~~~~--~~~~----------~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~-~~~~~~~  205 (254)
                      .+.+.+.|+|+.  ....          .....++.....+  ....|.|.+++.+|+|.|.|.+.+..... .....|.
T Consensus       165 ~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~--~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~fg~gt~L~  242 (256)
T 3umt_A          165 DIGSNLNWLQQKPDGTIKRLIYATSSLDSGVPKRFSGSRSG--SDYSLTISSLESEDFVDYYCLQYASSPPTFGGGTKLE  242 (256)
T ss_dssp             CCTTCEEEEEECTTCCEEEEEETTTEECTTSCTTEEEEEET--TEEEEEECSCCGGGCSEEEEEECSSSSCEECCCEEEE
T ss_pred             CCCcEEEEEEECCCCCcEEEEEeccccCCccCCCEEEecCC--CEEEEEECCCChhHCEEEEEEEeeCCCcEECCCEEEE
Confidence            888899999842  1111          0001112111111  12369999999999999999999864432 3345566


Q ss_pred             Eec
Q psy7036         206 FDS  208 (254)
Q Consensus       206 v~~  208 (254)
                      |..
T Consensus       243 V~~  245 (256)
T 3umt_A          243 IKR  245 (256)
T ss_dssp             EC-
T ss_pred             EEC
Confidence            653

>3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA, IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB: 3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A

Probab=99.89  E-value=1.9e-21  Score=142.25  Aligned_cols=193  Identities=18%  Similarity=0.223  Sum_probs=120.1

Q ss_pred             eeEeCCCceeecCCCeEEEEEEEeeC--CCCceEEEeCC--E---Ee---e----------eCCcceEEEeecCCcceEE
Q psy7036          10 SFTQKPQLRQEDEGNRLIFECQLLCN--PKPDIVWFRGE--T---QL---S----------EDTRTVMKTTPIGTNKYLV   69 (254)
Q Consensus        10 ~~~~~~~~~~v~~g~~v~l~C~~~~~--~~~~v~W~~~~--~---~~---~----------~~~~~~~~~~~~~~~~~~~   69 (254)
                      .....|....+.+|++|+|.|.+.+.  +.+.+.|||..  .   .+   .          ...++.+....   .....
T Consensus        10 v~~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~---~~~~~   86 (257)
T 3gkz_A           10 VQLQESGPSLVKPSQTLSLTCSVTGDSVTSGYWSWIRQFPGNKLDYMGYISYRGSTYYNPSLKSRISITRDT---SKNQV   86 (257)
T ss_dssp             EEEEEECCSEECTTCCEEEEEEEEESCCSSCEEEEEEECTTSCEEEEEEEETTCCEEECTTTTTTEEEEEEG---GGTEE
T ss_pred             EEEECCCCeEEcCCCcEEEEEEEEcccccceEEEEEEECCCCCcEEEEEEecCCcEEecccccccEEEEEec---CCceE
Confidence            34456667789999999999999884  47889999832  1   11   0          01122222111   12244


Q ss_pred             EEEEeccCCCCCeEEEEEEEcCCC----ceEEEEEEEEecccc--------CCCCCccccCCCeeeecCCCeEEEEEEEe
Q psy7036          70 ALELDDVIETDAGLYKVKAKNKMG----EVAASINLNFSREQI--------DGLAPTFLKKPSIRQEDDGKRLLFECRIQ  137 (254)
Q Consensus        70 ~l~i~~~~~~d~G~Y~C~~~~~~~----~~~~~~~l~v~~~~~--------~~~~~~~~~~~~~~~~~~g~~~~l~C~~~  137 (254)
                      +|.|.+++.+|+|.|+|.+.+..+    .......|.|.....        ...++.+...+....+.+|+.++|.|.+.
T Consensus        87 ~L~I~~v~~~DsG~Y~C~~~n~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~  166 (257)
T 3gkz_A           87 YLQLKSVSSEDTATYYCSYFDSDDYAMEYWGQGTSVTVSGGGGSGGGGSGGGGSQIVLTQSPAIMSASPGEKVTLTCSAS  166 (257)
T ss_dssp             EEEECSCCGGGCEEEEEEEECTTCTTCEEECCCEEEEEC---------CTTCCCCCCEECSCSEEEECTTCCEEEEEEES
T ss_pred             EEEECCCChhhCEEEEEEEecCCCcceeEEcCCEEEeecCchhhcccccCCCccceEEEcCCceEEEeCCCcEEEEEEEc
Confidence            799999999999999999998621    122345666653200        01234445556667888999999999998


Q ss_pred             eCCCC-eEEEEEC--CEeccc---C-------CcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcc-eEEEE
Q psy7036         138 ADPAP-TVIWSHS--GVQVKE---D-------KRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGES-NATIS  203 (254)
Q Consensus       138 ~~~~~-~~~W~~~--~~~~~~---~-------~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~-~~~~~  203 (254)
                      +.+.+ .+.|+|+  +.....   .       ...++.....+  ....|.|.+++.+|+|.|.|.+.+..... ..-..
T Consensus       167 ~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~--~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~fg~gt~  244 (257)
T 3gkz_A          167 SSVSSSHLYWYQQKPGSSPKLWIYSTSNLASGVPARFSGSGSG--TSYSLTISSMEAEDAASYFCHQWSSFPFTFGSGTK  244 (257)
T ss_dssp             SCCCGGGEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEET--TEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEE
T ss_pred             cCccceEEEEEEECCCCCcEEEEEEccccCCCcCCCEEEecCC--CEEEEEECCCChHHCEEEEEEEccCCceEEcCCEE
Confidence            88777 8999984  221110   0       00111111111  12369999999999999999998754321 23334


Q ss_pred             EEEe
Q psy7036         204 LNFD  207 (254)
Q Consensus       204 ~~v~  207 (254)
                      |.|.
T Consensus       245 l~v~  248 (257)
T 3gkz_A          245 LEIK  248 (257)
T ss_dssp             EEEC
T ss_pred             EEEE
Confidence            5554

>2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A*

Probab=99.89  E-value=8e-22  Score=142.98  Aligned_cols=181  Identities=16%  Similarity=0.184  Sum_probs=115.1

Q ss_pred             CeeEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeCC-----EEeee---------CCcceEEEeecCCcceEEEEEEe
Q psy7036           9 PSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGE-----TQLSE---------DTRTVMKTTPIGTNKYLVALELD   74 (254)
Q Consensus         9 p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~-----~~~~~---------~~~~~~~~~~~~~~~~~~~l~i~   74 (254)
                      +.+.+.|....+.+|++|+|.|.+.+.+.+.+.|+|++     ..+..         ..++.+.  ..   .....|.|.
T Consensus         2 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~--~~---~~~~~L~I~   76 (242)
T 2znx_A            2 IVLTQSPATLSVTPGNSVSLSCRASQSIGNNLHXYQQKSHESPRLLIKYASQSISGIPSRFSGS--GS---GTDFTLSIN   76 (242)
T ss_dssp             CCEEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEE--EE---TTEEEEEES
T ss_pred             CcEEEcCCeEEEcCCCcEEEEEEeCCCCCceEEEEEeCCCCCceEEEEeccccCCCCCCCEEEe--cC---CCEEEEEEC
Confidence            45678888899999999999999988888899999853     11111         1222221  11   123479999


Q ss_pred             ccCCCCCeEEEEEEEcCCCc-eEEEEEEEEeccccC-------CCCCccccCCCeeeecCCCeEEEEEEEeeCC--CCeE
Q psy7036          75 DVIETDAGLYKVKAKNKMGE-VAASINLNFSREQID-------GLAPTFLKKPSIRQEDDGKRLLFECRIQADP--APTV  144 (254)
Q Consensus        75 ~~~~~d~G~Y~C~~~~~~~~-~~~~~~l~v~~~~~~-------~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~--~~~~  144 (254)
                      +++.+|+|.|.|.+.+..+. ......|.|...+..       ..++.....+....+.+|+.++|.|.+.+.+  .+.+
T Consensus        77 ~v~~~D~G~Y~C~~~n~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~g~~~~~~~v  156 (242)
T 2znx_A           77 SVETEDFGMYFCQQSNSXPYTFGGGTKLEITGGGGSGGGGSGGGGSDIQLQESGPSLVKPSQTLSLTCSVTGDSITSDYX  156 (242)
T ss_dssp             SCCGGGCEEEEEEECSSSSCEECCCEEEEEC---------------CCEEEEECCSEECTTSCEEEEEEEESSCGGGSCE
T ss_pred             CCChHHCEEEEEeEecCCceEECCCEEEEEcCCCCCCcccccccccceeeecCCcceecCCCeEEEEEEEEccccCCcce
Confidence            99999999999999987543 123456666532110       0011112222234578999999999998876  4789


Q ss_pred             EEEECC--Eecc------cC--------CcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcC
Q psy7036         145 IWSHSG--VQVK------ED--------KRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNE  194 (254)
Q Consensus       145 ~W~~~~--~~~~------~~--------~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~  194 (254)
                      .|+|+.  ..+.      ..        ...++....+.......|.|.+++.+|+|.|.|.+.|.
T Consensus       157 ~W~k~~~~~~~~~l~~~~~~g~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~~  222 (242)
T 2znx_A          157 SXIRKFPGNRLEYMGYVSYSGSTYYNPSLKSRISITRDTSKNQYYLDLNSVTTEDTATYYCANXDG  222 (242)
T ss_dssp             EEEEECTTSCEEEEEEECTTSCEEECGGGTTCEEEEEETTTTEEEEEECSCCGGGCEEEEEEETTS
T ss_pred             eeEeeCCCCCcEEEEEEecCCccccCccccCcEEEEecCCCCEEEEEECCCCcCcCEEEEEeccCC
Confidence            999853  2210      00        01122222111111247999999999999999999874

>1op3_H FAB 2G12, heavy chain; domain-swapped FAB 2G12, anti-carbohydrate antibody, immune system; HET: MAN; 1.75A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1om3_H* 1op5_H* 3oay_M* 1zlu_H* 1zlv_H* 1zlw_H* 2oqj_B 1zls_H* 3ob0_H* 3oau_H* 3oaz_H* 3ghe_H 3eyf_B 3eyo_B 3ghb_H 3c2a_H 1q1j_H 2fl5_H*

Probab=99.89  E-value=1.9e-22  Score=144.69  Aligned_cols=179  Identities=13%  Similarity=0.228  Sum_probs=114.0

Q ss_pred             CCCceeecCCCeEEEEEEEeeCC--CCceEEEeCC--EE---ee-e-------------CCcceEEEeecCCcceEEEEE
Q psy7036          14 KPQLRQEDEGNRLIFECQLLCNP--KPDIVWFRGE--TQ---LS-E-------------DTRTVMKTTPIGTNKYLVALE   72 (254)
Q Consensus        14 ~~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~~--~~---~~-~-------------~~~~~~~~~~~~~~~~~~~l~   72 (254)
                      .|....+.+|++|+|.|.+.+.+  .+.+.|||++  ..   +. .             ..++.+...  . .....+|.
T Consensus         6 qp~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~--~-~~~~~sL~   82 (225)
T 1op3_H            6 ESGGGLVKAGGSLILSCGVSNFRISAHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRD--D-LEDFVYLQ   82 (225)
T ss_dssp             EECCEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEEEE--T-TTTEEEEE
T ss_pred             cCCCeEecCCCCEEEEEEecCcccCCceEEEEEeCCCCCcEEEEEEccCCCccccCcccCCceEEEec--C-CCCEEEEE
Confidence            34567899999999999998765  6789999853  21   10 0             112222211  1 12345899


Q ss_pred             EeccCCCCCeEEEEEEEcCCC-----c---eEEEEEEEEeccccCCCCCccccCCCeeeecCCCeEEEEEEEeeC-CCC-
Q psy7036          73 LDDVIETDAGLYKVKAKNKMG-----E---VAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQAD-PAP-  142 (254)
Q Consensus        73 i~~~~~~d~G~Y~C~~~~~~~-----~---~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~-  142 (254)
                      |.+++.+|+|.|.|.+.+..+     .   ......|.|...  ...+|.+........+..|+.+.|.|.+.+. |.+ 
T Consensus        83 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~L~V~~~--~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~p~  160 (225)
T 1op3_H           83 MHKMRVEDTAIYYCARKGSDRLSDNDPFDAWGPGTVVTVSPA--STKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPV  160 (225)
T ss_dssp             ECSCCGGGCEEEEEEEECCSSCCSSCCEEEECCCEEEEEESC--SCBCCEEEEECCCTTCCCCCEEEEEEEEEEEBSSCC
T ss_pred             ECCCChhhCEEEEEEEecCCCccccccceeecCCEEEecccC--CCcCCeEEEecccccccCCCcEEEEEEEEeEECCCe
Confidence            999999999999999998754     1   112456777531  1122333221111124579999999999886 666 


Q ss_pred             eEEEEECCEecccCCcceEEEcCCC-CceeeEEEEccCCCCCceeEEEEEEcCCCcce
Q psy7036         143 TVIWSHSGVQVKEDKRHKFSIDKDG-HSYFASLEIIDVTIEDAGKYKVTAKNELGESN  199 (254)
Q Consensus       143 ~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~  199 (254)
                      .+.|++++..+........ ...++ +...+.|.|.....+| |.|+|.|.|..+...
T Consensus       161 ~v~W~~~~~~~~~~~~~~~-~~~~g~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~  216 (225)
T 1op3_H          161 TVSWNSGALTSGVHTFPAV-LQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTK  216 (225)
T ss_dssp             EEECCTTSCCTTCEECCCE-ECTTSCEEEEEEEEEEGGGTTC-CCCCEEEEEGGGTEE
T ss_pred             EEEEecCCCcCCeEecCce-eCCCCCEEEEEEEEEechhcCC-CcEEEEEEcCCCCcc
Confidence            8999998865421111111 12222 2334679999888888 999999999765443

>1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=99.89  E-value=2.7e-21  Score=143.32  Aligned_cols=191  Identities=17%  Similarity=0.247  Sum_probs=121.2

Q ss_pred             eEeCCCceeecCCCeEEEEEEEeeCC--CCceEEEeCC--EE---ee--------------eCCcceEEEeecCCcceEE
Q psy7036          11 FTQKPQLRQEDEGNRLIFECQLLCNP--KPDIVWFRGE--TQ---LS--------------EDTRTVMKTTPIGTNKYLV   69 (254)
Q Consensus        11 ~~~~~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~~--~~---~~--------------~~~~~~~~~~~~~~~~~~~   69 (254)
                      +...|....+.+|++|+|.|.+.+.+  .+.+.|||++  ..   +.              ...++.+...   ......
T Consensus        29 ~~~~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~---~~~~~~  105 (282)
T 1qok_A           29 KLQQSGAELVRSGTSVKLSCTASGFNIKDSYMHWLRQGPEQGLEWIGWIDPENGDTEYAPKFQGKATFTTD---TSSNTA  105 (282)
T ss_dssp             EEEECCCEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGBTTEEEEEE---TTTTEE
T ss_pred             EEECCCCEEEeCCCeEEEEEeccCCCCCCceEEEEEeCCCCCcEEEEEEecCCCccccCchhcCcEEEEEe---cCCCeE
Confidence            35567788999999999999998764  5789999953  11   10              0122222211   111234


Q ss_pred             EEEEeccCCCCCeEEEEEEEcCCC---ce--EEEEEEEEeccccC---------CCCCccccCCCeeeecCCCeEEEEEE
Q psy7036          70 ALELDDVIETDAGLYKVKAKNKMG---EV--AASINLNFSREQID---------GLAPTFLKKPSIRQEDDGKRLLFECR  135 (254)
Q Consensus        70 ~l~i~~~~~~d~G~Y~C~~~~~~~---~~--~~~~~l~v~~~~~~---------~~~~~~~~~~~~~~~~~g~~~~l~C~  135 (254)
                      +|.|.+++.+|+|.|.|.+.+..|   ..  .....|.|...+..         ..++.+...+....+.+|+.++|.|.
T Consensus       106 sL~I~~v~~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~  185 (282)
T 1qok_A          106 YLQLSSLTSEDTAVYYCNEGTPTGPYYFDYWGQGTTVTVSSGGGGSGGGGSGGGGSENVLTQSPAIMSASPGEKVTITCS  185 (282)
T ss_dssp             EEEECSCCGGGCEEEEEEEECSSSSCCCEEECCCEEEEEEC---------------CCCEEEECSEEEECTTCCEEEEEE
T ss_pred             EEEECcCChhhCEEEEEEeccCCCccceeeeCCCEEEEEecCCcccCCccCCCCccceEEecCCCEEEEcCCCcEEEEEE
Confidence            899999999999999999998865   11  12346676542110         01233334455667889999999999


Q ss_pred             EeeCCCCeEEEEE--CCEeccc----------CCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCc-ceEEE
Q psy7036         136 IQADPAPTVIWSH--SGVQVKE----------DKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGE-SNATI  202 (254)
Q Consensus       136 ~~~~~~~~~~W~~--~~~~~~~----------~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~-~~~~~  202 (254)
                      +.+.+ +.+.|+|  ++..+..          ....++......  ....|.|.+++.+|+|.|+|.+.+.... .....
T Consensus       186 ~~~~~-~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~--~~~~L~I~~v~~~DsG~Y~C~a~~~~~~~fg~gt  262 (282)
T 1qok_A          186 ASSSV-SYMHWFQQKPGTSPKLWIYSTSNLASGVPARFSGSGSG--TSYSLTISRMEAEDAATYYCQQRSSYPLTFGAGT  262 (282)
T ss_dssp             ESSCC-SCCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEET--TEEEEEESSCCGGGCEEEEEEECSSSSCEECCCE
T ss_pred             ecCCC-ceEEEEEECCCCCcEEEEEEecCCCCcccCCeEEecCC--CEEEEEEccCChhHCEEEEEEEeeCCCceEeCCE
Confidence            99888 8999999  4543310          001112111111  1237999999999999999999875432 23334


Q ss_pred             EEEEe
Q psy7036         203 SLNFD  207 (254)
Q Consensus       203 ~~~v~  207 (254)
                      .|.|.
T Consensus       263 ~l~V~  267 (282)
T 1qok_A          263 KLELK  267 (282)
T ss_dssp             EEEEC
T ss_pred             EEEEe
Confidence            45554

>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens}

Probab=99.89  E-value=3.7e-22  Score=146.22  Aligned_cols=184  Identities=15%  Similarity=0.191  Sum_probs=107.3

Q ss_pred             CCeeEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeC--C-E--EeeeCC--------------cceEEEeecCCcceE
Q psy7036           8 APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRG--E-T--QLSEDT--------------RTVMKTTPIGTNKYL   68 (254)
Q Consensus         8 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~--~-~--~~~~~~--------------~~~~~~~~~~~~~~~   68 (254)
                      .|.+.+.|..+.+.+|++|+|.|.+.+.+.+.+.|||.  + .  .+....              +......   .....
T Consensus         2 s~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~---~~~~~   78 (259)
T 3omz_A            2 SSNLEGRTKSVIRQTGSSAEITCDLAEGSTGYIHWYLHQEGKAPQRLLYYDSYTSSVVLESGISPGKYDTYG---STRKN   78 (259)
T ss_dssp             ---------CEEEETTCCEEEECCC-----CEEEEEEECTTSCCEEEEEEETTTCCEEECTTCCBTTEEEEC---C--CC
T ss_pred             ccccccCCceeEecCCCcEEEEEEEccCCCcEEEEEEECCCCCcEEEEEEecCcCccccCCCCCcceeEeec---CCCCe
Confidence            46778888889999999999999998888889999982  1 1  111000              1111111   11123


Q ss_pred             EEEEEeccCCCCCeEEEEEEEcCCC---ceEEEEEEEEeccccCC-----------CCCccccCCCeeeecCCCeEEEEE
Q psy7036          69 VALELDDVIETDAGLYKVKAKNKMG---EVAASINLNFSREQIDG-----------LAPTFLKKPSIRQEDDGKRLLFEC  134 (254)
Q Consensus        69 ~~l~i~~~~~~d~G~Y~C~~~~~~~---~~~~~~~l~v~~~~~~~-----------~~~~~~~~~~~~~~~~g~~~~l~C  134 (254)
                      .+|.|.+++.+|+|.|.|.+.+..+   .......|.|.......           .++.+...+....+.+|+.++|.|
T Consensus        79 ~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C  158 (259)
T 3omz_A           79 LRMILRNLIENDSGVYYCATWDQNYYKKLFGSGTSLVVTDKQGSADDAKKDAAKKDGAQKVTQAQSSVSMPVRKAVTLNC  158 (259)
T ss_dssp             CEEEESSCCGGGCEEEEEEEECTTSSCEEECCCEEEEEEC------------------CEEECCCCCEEEETTCCEEECC
T ss_pred             EEEEECCCCcccCEEEEEEEeeCCccccEECCCCEEEEecCCCCccccccccccccCCeeeEEeCCEEEEcCCCCEEEEE
Confidence            3799999999999999999998765   23334566665421100           023445556667888999999999


Q ss_pred             EEeeC-CCCeEEEEECCE--ecc---c-------CCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcC
Q psy7036         135 RIQAD-PAPTVIWSHSGV--QVK---E-------DKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNE  194 (254)
Q Consensus       135 ~~~~~-~~~~~~W~~~~~--~~~---~-------~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~  194 (254)
                      .+.+. +.+.+.|+|...  .+.   .       ....++....+.......|.|.+++.+|+|.|.|.+.+.
T Consensus       159 ~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~  231 (259)
T 3omz_A          159 LYETSWWSYYIFWYKRLPSKEMIFLIRQGSDEQNAKSGRYSVNFKKAAKSVALTISALQLEDSAKYFCALGES  231 (259)
T ss_dssp             EEECCCSSCEEEEEEECTTCCEEEEEEEETTSCCCEETTEEECCBGGGTBCCEEESSCCGGGCSEEEEEEESC
T ss_pred             ECCCccCCceEEEeeeCCCCCcEEEEEECCcCCcccCCeEEEEEcCcCCEEEEEECCCChhHCEEEEEEEeCc
Confidence            98774 778999998531  110   0       001122222111111236999999999999999999853

>1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}

Probab=99.89  E-value=5e-21  Score=153.16  Aligned_cols=186  Identities=16%  Similarity=0.196  Sum_probs=111.2

Q ss_pred             eCCCceeecCCCeEEEEEEEeeCCC----CceEEEeC--CEE---e-ee----------CCcceEEEeecCCcceEEEEE
Q psy7036          13 QKPQLRQEDEGNRLIFECQLLCNPK----PDIVWFRG--ETQ---L-SE----------DTRTVMKTTPIGTNKYLVALE   72 (254)
Q Consensus        13 ~~~~~~~v~~g~~v~l~C~~~~~~~----~~v~W~~~--~~~---~-~~----------~~~~~~~~~~~~~~~~~~~l~   72 (254)
                      ..|..+.+.+|++++|.|.+.+.+.    ..+.|||.  +..   + ..          ....++....+ .....++|.
T Consensus         5 ~qp~~v~v~~G~~v~L~C~~~~~~~~~~~~~v~W~rq~~g~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~-~~~~~~sL~   83 (512)
T 1zvo_C            5 QESGPGLVKPSETLSLTCIVSGGPIRRTGYYWGWIRQPPGKGLEWIGGVYYTGSIYYNPSLRGRVTISVD-TSRNQFSLN   83 (512)
T ss_pred             ECCCCEEEcCCCCEEEEEEEcccccCCCCeeEEEEEeCCCCCcEEEEEEecCCCEEECCccCCceEEEec-CCCCEEEEE
Confidence            3467788999999999999976432    67999985  221   1 10          00112222111 122345899


Q ss_pred             EeccCCCCCeEEEEEEEcCCC-----------c--eEEEEEEEEeccccCCCCCcccc-CCCeeeecCCCeEEEEEEEee
Q psy7036          73 LDDVIETDAGLYKVKAKNKMG-----------E--VAASINLNFSREQIDGLAPTFLK-KPSIRQEDDGKRLLFECRIQA  138 (254)
Q Consensus        73 i~~~~~~d~G~Y~C~~~~~~~-----------~--~~~~~~l~v~~~~~~~~~~~~~~-~~~~~~~~~g~~~~l~C~~~~  138 (254)
                      |.+++.+|+|.|.|.+.+..+           .  ......|.|....  ..+|.+.. .+.......++.+.|.|.+.+
T Consensus        84 I~~v~~~Dsg~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~~~~--~~~P~i~~~~~~~~~~~~~~~v~L~C~~~g  161 (512)
T 1zvo_C           84 LRSMSAADTAMYYCARGNPPPYYDIGTGSDDGIDVWGQGTTVHVSSAP--TKAPDVFPIISGCRHPKDNSPVVLACLITG  161 (512)
T ss_pred             ECcCCHHHCEEEEEEEECCCCccccccccccccccccCceEEEecccC--CcCCeEEeccCCcccccCCCeEEEEEEEEe
Confidence            999999999999999987642           1  1234566665211  12333221 111110124688999999988


Q ss_pred             C-CCC-eEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcceEEE
Q psy7036         139 D-PAP-TVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATI  202 (254)
Q Consensus       139 ~-~~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~  202 (254)
                      . |.+ .+.|++++...............+.+...+.|.|.....+ .|.|+|.|.|..+......
T Consensus       162 ~~P~p~~v~W~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~-~g~ytC~v~n~~~~~~~~~  226 (512)
T 1zvo_C          162 YHPTSVTVTWYMGTQSQPQRTFPEIQRRDSYYMTSSQLSTPLQQWR-QGEYKCVVQHTASKSKKEI  226 (512)
T ss_pred             eecCceEEEEEcCcccCceEecCceecCCCCEEEEEEEEEcHHHcC-CceEEEEEEeCCCCceEEE
Confidence            7 655 8999996543211100011111122234467888887777 8999999999988765443

>1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen complex, HIV inhibiting antibody; 1.89A {Mus musculus} PDB: 1jp5_A

Probab=99.89  E-value=2.3e-21  Score=141.04  Aligned_cols=180  Identities=15%  Similarity=0.218  Sum_probs=114.2

Q ss_pred             eeEeCCCceeecCCCeEEEEEEEeeCC-----CCceEEEeCC--E---Eeee---------CCcceEEEeecCCcceEEE
Q psy7036          10 SFTQKPQLRQEDEGNRLIFECQLLCNP-----KPDIVWFRGE--T---QLSE---------DTRTVMKTTPIGTNKYLVA   70 (254)
Q Consensus        10 ~~~~~~~~~~v~~g~~v~l~C~~~~~~-----~~~v~W~~~~--~---~~~~---------~~~~~~~~~~~~~~~~~~~   70 (254)
                      .+.+.|..+.+.+|++++|.|.+.+.+     .+.+.|+|++  .   .+..         ..++.+.  .   ......
T Consensus         3 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~--~---~~~~~~   77 (247)
T 1svz_A            3 LMTQTPLYLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGS--G---SGTDFT   77 (247)
T ss_dssp             CEEEECSEEEECTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEE--E---ETTEEE
T ss_pred             cEEecCCeEEecCCCCEEEEEeCCCcccccCCCceEEEEEECCCCCceEEEEEecccCCCCCCcEEec--c---CCCEEE
Confidence            567778888999999999999998776     6889999842  1   1111         1222221  1   112347


Q ss_pred             EEEeccCCCCCeEEEEEEEcCCCc-eEEEEEEEEeccccC-------CCCCccccCCCeeeecCCCeEEEEEEEeeCC--
Q psy7036          71 LELDDVIETDAGLYKVKAKNKMGE-VAASINLNFSREQID-------GLAPTFLKKPSIRQEDDGKRLLFECRIQADP--  140 (254)
Q Consensus        71 l~i~~~~~~d~G~Y~C~~~~~~~~-~~~~~~l~v~~~~~~-------~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~--  140 (254)
                      |.|.+++.+|+|.|.|.+.+..+. ......|.|......       ..++.....+....+.+|+.++|.|.+.+.+  
T Consensus        78 L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~  157 (247)
T 1svz_A           78 LKISRVEAEDLGIYYCFQGSHFPPTFGGGTKLEIKGGGGSGGGGSGGGGSEVQLQQSGPELKKPGETVKISCKATNYAFT  157 (247)
T ss_dssp             EEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEC---------------CCEEEECCCEEECTTCCEEEEEEEESSCGG
T ss_pred             EEECCCCHHHCEEEEEEEccCCccEECCCEEEEEECCccccccccccccCceEEeCCCceeecCCCcEEEEEEEcCcccC
Confidence            999999999999999999987543 223456666532100       0012122222334588999999999998875  


Q ss_pred             CCeEEEEECC--Eec------ccC---------CcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcC
Q psy7036         141 APTVIWSHSG--VQV------KED---------KRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNE  194 (254)
Q Consensus       141 ~~~~~W~~~~--~~~------~~~---------~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~  194 (254)
                      .+.+.|+|+.  ...      ...         ...++....+.......|.|.+++.+|+|.|.|.+.|.
T Consensus       158 ~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~  228 (247)
T 1svz_A          158 DYSMHWVKQAPGGDLKYVGWINTETDEPTFADDFKGRFAFSLDTSTSTAFLQINNLKNEDTATYFCVRDRH  228 (247)
T ss_dssp             GSCEEEEEECTTCCEEEEEEECTTTCCEEECGGGSSSEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEEG
T ss_pred             CcEEEEEEeCCCCCcEEEEEEEcCCCccccCccccCcEEEEEecCCCEEEEEECCCChhHCEEEEEEEecc
Confidence            5689999963  111      000         01112211111111248999999999999999999985

>3bae_H WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} SCOP: b.1.1.2 PDB: 3bkc_H 3bkj_H 3bkm_H 3mck_H 2r0w_H* 2iqa_H 2iq9_H 1ggi_H 1ggb_H 1ggc_H 3eys_H* 2ipt_H 2ipu_H 3eyu_H* 2r0z_H* 3rkd_H 1r0a_H* 1n5y_H* 1n6q_H* 1t03_H* ...

Probab=99.89  E-value=3.6e-22  Score=143.49  Aligned_cols=185  Identities=12%  Similarity=0.217  Sum_probs=115.4

Q ss_pred             CCceeecCCCeEEEEEEEeeCCC----CceEEEeCC--EE---e-ee----------CCcceEEEeecCCcceEEEEEEe
Q psy7036          15 PQLRQEDEGNRLIFECQLLCNPK----PDIVWFRGE--TQ---L-SE----------DTRTVMKTTPIGTNKYLVALELD   74 (254)
Q Consensus        15 ~~~~~v~~g~~v~l~C~~~~~~~----~~v~W~~~~--~~---~-~~----------~~~~~~~~~~~~~~~~~~~l~i~   74 (254)
                      |....+.+|++|+|.|.+.+.+.    +.+.|||++  ..   + ..          ....++....+. ......|.|.
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~-~~~~~~L~I~   85 (228)
T 3bae_H            7 SGPGLLKPSQTLSLTCSFSGFSIRTSKVGVSWIRQPSGKGLEWLAHIYWDDDKRYNPSLESRLTISKDT-SRDMVFMKIT   85 (228)
T ss_dssp             ECCSEECTTCCEEEEEEEESSCHHHHCCEEEEEEEETTCCCEEEEEECTTSCEEECTTTGGGEEEEEET-TTTEEEEEEC
T ss_pred             CCceeecCCCeEEEEEEEeCcccCCCceeEEEEEECCCCCeEEEEEEecCCceeeCcccCCcEEEEEcC-CCCeEEEEEc
Confidence            56678999999999999987664    789999842  21   1 10          011122221111 1123589999


Q ss_pred             ccCCCCCeEEEEEEEcCCC------c---eEEEEEEEEeccccCCCCCccccCCCeeeecCCCeEEEEEEEeeC-CCC-e
Q psy7036          75 DVIETDAGLYKVKAKNKMG------E---VAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQAD-PAP-T  143 (254)
Q Consensus        75 ~~~~~d~G~Y~C~~~~~~~------~---~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~-~  143 (254)
                      +++.+|+|.|.|.+.+..+      .   ......|.|...  ...+|.+........+..|+.+.|.|.+.+. |.+ .
T Consensus        86 ~v~~~D~G~Y~C~~~~~~g~~~~~~~~~~~~~~~~L~V~~~--~~~~P~i~~~~~~~~~~~g~~~~l~C~~~g~~P~p~~  163 (228)
T 3bae_H           86 SVDTADTATYYCARRGFYGRKYEVNHFDYWGQGTTLTVSSA--KTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVT  163 (228)
T ss_dssp             SCCGGGCEEEEEEEEEESTTCTTSEEEEEECCCEEEEECSC--CCBCCEEEEECC-----CCSEEEEEEEEEEEBSSCCE
T ss_pred             CCCcccCEEEEEEEecCCCccccccceeeeCCcEEEEecCC--CCCCCEEEEecccccccCCCCEEEEEEEccEeCCCEE
Confidence            9999999999999998654      1   112356676531  1123433322222235679999999999886 777 8


Q ss_pred             EEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcceEEEEE
Q psy7036         144 VIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISL  204 (254)
Q Consensus       144 ~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~  204 (254)
                      +.|++++..+........ ...+.+...+.|.|.....+| |.|+|.|.|..+.......+
T Consensus       164 v~W~~~~~~~~~~~~~~~-~~~~~~~~~s~L~i~~~~~d~-g~YtC~~~n~~~~~~~~~~~  222 (228)
T 3bae_H          164 LTWNSGSLSSGVHTFPAV-LQSDLYTLSSSVTVTSSTWPS-ESITCNVAHPASSTKVDKKI  222 (228)
T ss_dssp             EEEGGGTCCTTEEEEEEE-EETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGTEEEEEEC
T ss_pred             EEEeeCCcccCceEcCce-eCCCcEEEEEEEEEEhhhcCC-CcEEEEEEECCCCCCEEEEc
Confidence            999998875421111111 111222234579999888866 99999999998876655443

>1hxm_B Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=99.89  E-value=3.2e-21  Score=139.77  Aligned_cols=195  Identities=14%  Similarity=0.207  Sum_probs=121.3

Q ss_pred             CeeEeCCCceeecCCCeEEEEEEEeeC--CCCceEEEeCC--E---Eee-eC-----------CcceEEEeecCCcceEE
Q psy7036           9 PSFTQKPQLRQEDEGNRLIFECQLLCN--PKPDIVWFRGE--T---QLS-ED-----------TRTVMKTTPIGTNKYLV   69 (254)
Q Consensus         9 p~~~~~~~~~~v~~g~~v~l~C~~~~~--~~~~v~W~~~~--~---~~~-~~-----------~~~~~~~~~~~~~~~~~   69 (254)
                      +.+.+.|..+.+.+|++++|.|.+.+.  +...+.|||..  .   .+. ..           ...++....+ .....+
T Consensus         2 ~~v~q~p~~v~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~-~~~~~~   80 (242)
T 1hxm_B            2 GHLEQPQISSTKTLSKTARLECVVSGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRI-PETSTS   80 (242)
T ss_dssp             CEEECCCSEEEEETTCCEEEEEEEESSCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEE-TTTTEE
T ss_pred             CccCcCCceEEecCCCcEEEEEEeCCccccCceEEEEEeCCCCCcEEEEEEecCCceecCCcccCCeEEEEec-CCCcEE
Confidence            456778888899999999999999875  56789999842  1   111 00           1122222111 111345


Q ss_pred             EEEEeccCCCCCeEEEEEEEcCCC-----c--eEEEEEEEEeccccC-CCCCccc-cCCCeeeecCCCeEEEEEEEeeC-
Q psy7036          70 ALELDDVIETDAGLYKVKAKNKMG-----E--VAASINLNFSREQID-GLAPTFL-KKPSIRQEDDGKRLLFECRIQAD-  139 (254)
Q Consensus        70 ~l~i~~~~~~d~G~Y~C~~~~~~~-----~--~~~~~~l~v~~~~~~-~~~~~~~-~~~~~~~~~~g~~~~l~C~~~~~-  139 (254)
                      +|.|.+++.+|+|.|.|.+.+...     .  ......|.|...... ..+|... ..+....+..|+.+.|.|.+.+. 
T Consensus        81 ~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~p~~~v~~p~~~~~~~g~~v~L~C~~~g~~  160 (242)
T 1hxm_B           81 TLTIHNVEKQDIATYYCALWEAQQELGKKIKVFGPGTKLIITDKQLDADVSPKPTIFLPSIAETKLQKAGTYLCLLEKFF  160 (242)
T ss_dssp             EEEECSCCGGGCEEEEEEEEEECSSTTCEEEEECCCEEEEEESSCCCSCCSCBCCCCCCCGGGGGSSSCEEEEEEEEEES
T ss_pred             EEEECCCCcccCEEEEEeeecCCccccccceeEcCcEEEEEcccccCCCcCCCceEECCChhhcccCCCceEEEEEeeEE
Confidence            899999999999999999987531     1  112456777532110 0122211 11233345579999999999886 


Q ss_pred             CC-CeEEEEECCE-ecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcceEEEEEEE
Q psy7036         140 PA-PTVIWSHSGV-QVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNF  206 (254)
Q Consensus       140 ~~-~~~~W~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~v  206 (254)
                      |. +.+.|++++. .+............+.+...+.|.|..... + |.|+|.|.|..+.......+.+
T Consensus       161 P~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~-~-g~y~C~v~n~~~~~~~~~~~~~  227 (242)
T 1hxm_B          161 PDVIKIHWEEKKSNTILGSQEGNTMKTNDTYMKFSWLTVPEKSL-D-KEHRCIVRHENNKNGVDQEIIF  227 (242)
T ss_dssp             SCCEEEEEEESSSCCCCCCEECCCEECSSSEEEEEEEEECTGGG-G-SCEEEEEEETTSGGGSCEEEEE
T ss_pred             CCCeEEEEEcCCCEeecCccccceecCCCcEEEEEEEEEccccC-C-CEEEEEEEeCCCCCCceeEeec
Confidence            54 6899999987 453221111112222223345788877664 4 9999999999887755555554

>3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus musculus}

Probab=99.88  E-value=5.6e-24  Score=153.50  Aligned_cols=182  Identities=15%  Similarity=0.215  Sum_probs=99.5

Q ss_pred             CCeeEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeCC--EEe---ee---------CCcceEEEeecCCcceEEEEEE
Q psy7036           8 APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGE--TQL---SE---------DTRTVMKTTPIGTNKYLVALEL   73 (254)
Q Consensus         8 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~--~~~---~~---------~~~~~~~~~~~~~~~~~~~l~i   73 (254)
                      .+.+.+.|....+.+|++++|.|.+.+.+.+.+.|||++  ..+   ..         ..++...     ......+|.|
T Consensus        23 ~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~-----~~~~~~~L~I   97 (233)
T 3bqu_C           23 ETTVTQSPASLSMSIGEKVTIRCITSTDIDDDMNWYQQKPGEPPRLLISDGNTLRPGVPSRFSSS-----GYGTDFVFTI   97 (233)
T ss_dssp             CCCEEEECSBC-------CCEEEEEEEEESSCEEEEEECTTSCCEEEECTTSCBCTTSCTTCCCC-----EEEEEEEEC-
T ss_pred             ceeEEEcCCeEEEecCCCEEEEEecCCcCCCeEEEEEECCCCCcEEEEEcCCccCCCCCccEEee-----ccCCEEEEEE
Confidence            455667788888999999999999988777789999853  111   10         1111111     0123347999


Q ss_pred             eccCCCCCeEEEEEEEcCCCce-EEEEEEEEeccccCCCCCccccCCCeeeecCCCeEEEEEEEeeCC-CC-eEEEEECC
Q psy7036          74 DDVIETDAGLYKVKAKNKMGEV-AASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQADP-AP-TVIWSHSG  150 (254)
Q Consensus        74 ~~~~~~d~G~Y~C~~~~~~~~~-~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~-~~-~~~W~~~~  150 (254)
                      .+++.+|+|.|.|.+.+..+.. .....|.|...   ..+|.+...+.......|+.++|.|.+.+.+ .+ .+.|+|++
T Consensus        98 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~---~~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g  174 (233)
T 3bqu_C           98 ENMLSEDVADYYCLQSDNLPYTFGGGTNLEIKRA---DAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDG  174 (233)
T ss_dssp             ----CCCCSEEEEEECSSSSCCBCCCCBC---CC---CBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCEEEEEEEC-
T ss_pred             CCCCHHHCEEEEEEEecCCceeecCCEEEEEeCC---CCCCEEEEeCCCHHhhcCCceEEEEEEccccCCceEEEEEECC
Confidence            9999999999999998866532 12234455321   1244433322222233588999999998854 43 79999999


Q ss_pred             EecccC-Cc-ceEEEcCCC-CceeeEEEEccCCCCCceeEEEEEEcCCCc
Q psy7036         151 VQVKED-KR-HKFSIDKDG-HSYFASLEIIDVTIEDAGKYKVTAKNELGE  197 (254)
Q Consensus       151 ~~~~~~-~~-~~~~~~~~~-~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~  197 (254)
                      ..+... .. .......++ +...+.|.|.....+|.|.|+|.|.|....
T Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~  224 (233)
T 3bqu_C          175 SERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTST  224 (233)
T ss_dssp             ----CCEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCCEEEEEEEC---
T ss_pred             eeCCCCceEecCCccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCCC
Confidence            876543 11 011111222 233467999999899999999999997554

>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A*

Probab=99.88  E-value=7.2e-21  Score=132.88  Aligned_cols=171  Identities=12%  Similarity=0.101  Sum_probs=116.2

Q ss_pred             CeeEeCCCc-eeecCCCeEEEEEEEeeCCCC--ceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEE
Q psy7036           9 PSFTQKPQL-RQEDEGNRLIFECQLLCNPKP--DIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYK   85 (254)
Q Consensus         9 p~~~~~~~~-~~v~~g~~v~l~C~~~~~~~~--~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~   85 (254)
                      |.....+.. +.+.+|++++|.|.+ +.|.+  .|+|++.+..+   .+  ....     .....|.|.+++.+|+|.|.
T Consensus         7 ~~~V~pp~~~v~v~~G~sv~L~C~a-~~p~P~~~i~W~~~~~~l---~~--~~~~-----~~~~~L~I~~v~~~d~G~Y~   75 (210)
T 1gsm_A            7 PLQVEPPEPVVAVALGASRQLTCRL-ACADRGASVQWRGLDTSL---GA--VQSD-----TGRSVLTVRNASLSAAGTRV   75 (210)
T ss_dssp             SEEEESCCSEEEEETTCCEEEEEEE-CCSSTTCEEEEESSTTTT---CC--EEEE-----SSEEEEEECSCCGGGCEEEE
T ss_pred             CEEEeCCCCceEEeCCCCEEEEEEC-CCCCCCcceEEeeccccc---Cc--EEec-----CCccEEEECccCcccCceEE
Confidence            433344444 588999999999999 77777  99999855333   11  1111     11237999999999999999


Q ss_pred             EEEEcCCCceEEEEEEEEeccccCCCCCcccc-CCCeeeecCCCeEEEEEEEeeC-CC----CeEEEEECCEecccCCcc
Q psy7036          86 VKAKNKMGEVAASINLNFSREQIDGLAPTFLK-KPSIRQEDDGKRLLFECRIQAD-PA----PTVIWSHSGVQVKEDKRH  159 (254)
Q Consensus        86 C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~-~~~~~~~~~g~~~~l~C~~~~~-~~----~~~~W~~~~~~~~~~~~~  159 (254)
                      |.+.+..+.....+.|.|..      +|.... .+.  .+..|+.. |.|.+.+. |.    +++.|+|++..+......
T Consensus        76 C~a~n~~~~~~~~~~ltV~~------~P~~~~i~~~--~~~~g~~~-l~C~a~g~~P~~~~~lti~Wlk~~~~L~~~~~~  146 (210)
T 1gsm_A           76 CVGSCGGRTFQHTVQLLVYA------FPNQLTVSPA--ALVPGDPE-VACTAHKVTPVDPNALSFSLLVGGQELEGAQAL  146 (210)
T ss_dssp             EEEEETTEEEEEEEEEEEEB------CCSEEEEESS--SBCTTCCE-EEEEEEEEBCCCTTTEEEEEEETTEECTTCEEC
T ss_pred             EEEEeCCCceEEEEEEEEEe------cCCCcEEccc--eEEeCCce-EEEEeCCCCCCCCCCcEEEEEECCEEccccccc
Confidence            99999888877788888873      443222 222  45567778 99999885 64    379999999998543211


Q ss_pred             e--EEE--------cCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcce
Q psy7036         160 K--FSI--------DKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESN  199 (254)
Q Consensus       160 ~--~~~--------~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~  199 (254)
                      .  ...        ....+...+++.+...+.+|.+.|+|.|.+..-...
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~vts~~~~~~~~~D~~~~~tC~a~~~L~~~~  196 (210)
T 1gsm_A          147 GPEVQEEEEEPQGDEDVLFRVTERWRLPPLGTPVPPALYCQATMRLPGLE  196 (210)
T ss_dssp             CCEEEECTTCCSSCCCCCEEEEEEEECCCCCSSCCSEEEEEEEEEETTEE
T ss_pred             ccceecccccccCCcceEEEEEEEEeecCCcccCCceEEEEEEeeCCCCc
Confidence            1  100        011223345677777777777899999998765443

>1dn0_B IGM-kappa cold agglutinin (heavy chain); FAB, antibody, human, immune system; 2.28A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1qlr_B* 2j6e_H* 2agj_H* 2h32_H

Probab=99.88  E-value=3.6e-21  Score=138.56  Aligned_cols=189  Identities=13%  Similarity=0.174  Sum_probs=114.5

Q ss_pred             CCCceeecCCCeEEEEEEEeeCC--CCceEEEeCC--E---Eee-e------------CCcceEEEeecCCcceEEEEEE
Q psy7036          14 KPQLRQEDEGNRLIFECQLLCNP--KPDIVWFRGE--T---QLS-E------------DTRTVMKTTPIGTNKYLVALEL   73 (254)
Q Consensus        14 ~~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~~--~---~~~-~------------~~~~~~~~~~~~~~~~~~~l~i   73 (254)
                      .|....+.+|++++|.|.+.+.+  .+.+.|||..  .   .+. .            ..++.+...  . ......|.|
T Consensus         6 qp~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~--~-~~~~~~L~I   82 (232)
T 1dn0_B            6 QWGAGLLKPSETLSLTCAVYGGSFSDYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVD--T-SKNQFSLKL   82 (232)
T ss_dssp             EECCCEECTTSCEEEEEEEESSCCSSCCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEE--T-TTTEEEEEE
T ss_pred             CCCCEEEeCCCcEEEEEEEccccCCCceEEEEEeCCCCCeEEEEEEecCCceeeCCccCCeEEEEEe--C-CCCEEEEEE
Confidence            34567899999999999998754  5789999842  1   111 0            122222211  1 123458999


Q ss_pred             eccCCCCCeEEEEEEEcCC--Cc----eEEEEEEEEeccccCCCCCccccCCCeeeecCC-CeEEEEEEEeeC-CCC-eE
Q psy7036          74 DDVIETDAGLYKVKAKNKM--GE----VAASINLNFSREQIDGLAPTFLKKPSIRQEDDG-KRLLFECRIQAD-PAP-TV  144 (254)
Q Consensus        74 ~~~~~~d~G~Y~C~~~~~~--~~----~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g-~~~~l~C~~~~~-~~~-~~  144 (254)
                      .+++.+|+|.|.|.+.+..  +.    ......|.|...  ...+|.+........+..| +.++|.|.+.+. |.+ .+
T Consensus        83 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~--~~~~P~v~~~~p~~~~~~g~~~v~L~C~~~g~~P~p~~v  160 (232)
T 1dn0_B           83 SSVTAADTAVYYCARPPHDTSGHYWNYWGQGTLVTVSSG--SASAPTLFPLVSCENSPSDTSSVAVGCLAQDFLPDSITF  160 (232)
T ss_dssp             CSCCGGGCEEEEEEECSSTTSCSCCSEECCCEEEEECSS--CCBCCEEEEEECC------CCSEEEEEEEEEEBSSCCEE
T ss_pred             CCCCcccCEEEEEEEecCCcCCchhhhcccceEEEEccC--CCCCCceEEeccccccCCCCCcEEEEEEEEEEeCCCeEE
Confidence            9999999999999998422  11    123456777531  1123333221111223467 899999999886 766 89


Q ss_pred             EEEE-CCEecccCCcceEEEcCCCCceeeEEEEccCCC--CCceeEEEEEEcCCCcceEEEEEEEe
Q psy7036         145 IWSH-SGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTI--EDAGKYKVTAKNELGESNATISLNFD  207 (254)
Q Consensus       145 ~W~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~--~d~G~y~C~~~~~~~~~~~~~~~~v~  207 (254)
                      .|++ ++..+..............+...+.|.|.....  +|.|.|+|.|.|..+.......+.+.
T Consensus       161 ~W~~~~g~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~d~g~ytC~v~n~~~~~~~~~~i~~~  226 (232)
T 1dn0_B          161 SWKYKNNSDISSTRGFPSVLRGGKYAATSQVLLPSKDVMAGTDEHVVCKVQHPNGNKEKNVPLPVI  226 (232)
T ss_dssp             EEEETTSCEECCEEECCCEEETTEEEEEEEEEECTTCC---CCCEEEEEEECTTCCEEEEEECCC-
T ss_pred             EEEcCCCCceeeEEECCccccCCcEEEEEEEEEcHHHhcccCCCeEEEEEEeCCCCcceeEecCCC
Confidence            9999 887765310000001112222346789988886  78999999999998877666655544

>3liz_H 4C3 monoclonal antibody heavy chain; hydrolase-immune system complex; HET: NAG BMA MAN; 1.80A {Mus musculus} PDB: 3rvv_D* 3rvu_D 3rvt_D* 3rvw_D* 3rvx_D 1lo4_H 1ub6_H 3r06_B 3r08_H

Probab=99.88  E-value=9.3e-22  Score=143.54  Aligned_cols=187  Identities=11%  Similarity=0.140  Sum_probs=117.2

Q ss_pred             CCCceeecCCCeEEEEEEEeeC--CCCceEEEeCC-----EEe-e-------------eCCcceEEEeecCCcceEEEEE
Q psy7036          14 KPQLRQEDEGNRLIFECQLLCN--PKPDIVWFRGE-----TQL-S-------------EDTRTVMKTTPIGTNKYLVALE   72 (254)
Q Consensus        14 ~~~~~~v~~g~~v~l~C~~~~~--~~~~v~W~~~~-----~~~-~-------------~~~~~~~~~~~~~~~~~~~~l~   72 (254)
                      .+..+.+.+|++|+|.|.+.+.  +...+.|||..     ..+ .             ...++.+....   .....+|.
T Consensus         6 ~p~~v~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~---~~~~~sL~   82 (253)
T 3liz_H            6 ESGGGLVQPGGSLKLSCAASGFTFSSFAMSWGRQTPDKRLELVATINSNGASTYYPDTVKGRFTISRDN---AKNTLFLQ   82 (253)
T ss_dssp             EECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEECCTTTTTTCEEEEEG---GGTEEEEE
T ss_pred             cCCCEEECCCCcEEEEEEeeCccccCceEEEEEECCCCCcEEEEEEecCCCccccCcccCCcEEEEEeC---CCCEEEEE
Confidence            4556789999999999999763  35689999842     111 0             01223222211   12345799


Q ss_pred             EeccCCCCCeEEEEEEEcCC----CceEEEEEEEEeccccCCCCCccccCCCeeeecCCCeEEEEEEEee-CCCC-eEEE
Q psy7036          73 LDDVIETDAGLYKVKAKNKM----GEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQA-DPAP-TVIW  146 (254)
Q Consensus        73 i~~~~~~d~G~Y~C~~~~~~----~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~~~~-~~~W  146 (254)
                      |.+++.+|+|.|.|.+.+..    ........|.|..  ....+|.+........+..|+.+.|.|.+.+ .|.+ .+.|
T Consensus        83 I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~l~V~~--~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W  160 (253)
T 3liz_H           83 MSSLKSEDTAMYYCTRDPAGRAWFAYWGQGTLVTVSA--AKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTW  160 (253)
T ss_dssp             ECSCCGGGCEEEEEEECCBTTTBCCEECCCEEEEECS--SCCBCCEEEEECC------CCEEEEEEEEEEEBSSCCEEEE
T ss_pred             ECCCChhhCEEEEEEEecCCcceeeEECCCEEEEEec--cCCCCCeEEEecCCcccCCCCcEEEEEEEeeEeCCCeEEEE
Confidence            99999999999999998752    2222334666642  1113444332223334557999999999988 6656 8999


Q ss_pred             EECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcceEEEEEEEe
Q psy7036         147 SHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFD  207 (254)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~v~  207 (254)
                      ++++..+........ .....+...+.|.|.....+| |.|+|.|.|..+.......+.+.
T Consensus       161 ~~~~~~~~~~~~~~~-~~~g~~~~~s~L~i~~~~~~d-g~ytC~v~~~~~~~~~~~~~~~~  219 (253)
T 3liz_H          161 NSGSLSSGVHTFPAV-LQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKVDKKIVPR  219 (253)
T ss_dssp             GGGTBCTTEEECCCE-EETTEEEEEEEEEEETTSTTT-SCCEEEEEEGGGTEEEEEECCCC
T ss_pred             EeCCeecceEeCCcc-ccCCeEEEEEEEEEcHHHCCC-ceEEEEEEECCCCcceEEEecCc
Confidence            999874421111111 112222334689999999999 99999999998877766666554

>3ux9_B SCFV antibody; five helices, long loop connecting helix, hydrophobic intera cytokine-immune system complex; 2.80A {Homo sapiens}

Probab=99.88  E-value=1e-21  Score=143.66  Aligned_cols=178  Identities=14%  Similarity=0.215  Sum_probs=111.2

Q ss_pred             eCCCceeecCCCeEEEEEEEeeC--CCCceEEEeCC--E---Eee---------eCCcceEEEeecCCcceEEEEEEecc
Q psy7036          13 QKPQLRQEDEGNRLIFECQLLCN--PKPDIVWFRGE--T---QLS---------EDTRTVMKTTPIGTNKYLVALELDDV   76 (254)
Q Consensus        13 ~~~~~~~v~~g~~v~l~C~~~~~--~~~~v~W~~~~--~---~~~---------~~~~~~~~~~~~~~~~~~~~l~i~~~   76 (254)
                      ..|....+.+|++|+|.|.+.+.  +.+.+.|||++  .   .+.         ...++..  ...   .....|.|.++
T Consensus         7 ~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~--~~~---~~~~~L~I~~v   81 (256)
T 3ux9_B            7 TQPPSVSGAPGQRVTISCSGSSSNIGSNYVSWYQQLPGTAPKLLIYDNNQRPSGVPDRFSG--SKS---GTSASLAITGL   81 (256)
T ss_dssp             BCCSEEEECTTCCEEEEEECCTTTTTTSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEE--EEE---TTEEEEEECSC
T ss_pred             ecCCcEEEcCCCcEEEEEecCCCCCCCceEEEEEECCCCCCEEEEEecCCCCCCcCCcEEE--Ecc---CCEEEEEECCC
Confidence            34556789999999999999876  77899999842  1   111         1122222  111   12347999999


Q ss_pred             CCCCCeEEEEEEEcCCCc---eEEEEEEEEeccccCCC--------------CCccccCCCeeeecCCCeEEEEEEEeeC
Q psy7036          77 IETDAGLYKVKAKNKMGE---VAASINLNFSREQIDGL--------------APTFLKKPSIRQEDDGKRLLFECRIQAD  139 (254)
Q Consensus        77 ~~~d~G~Y~C~~~~~~~~---~~~~~~l~v~~~~~~~~--------------~~~~~~~~~~~~~~~g~~~~l~C~~~~~  139 (254)
                      +.+|+|.|+|.+.+..+.   ......|.|........              .+.....+....+.+|+.++|.|.+.+.
T Consensus        82 ~~~DsG~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~  161 (256)
T 3ux9_B           82 QSEDEADYYCQVRDNNENEWVFGGGTKLTVLGSGGSTITSYNVYYTKLSSSGSEVQLVESGGGLVQPGGSLRLSCAASGF  161 (256)
T ss_dssp             CGGGCEEEEEEEEETTTTEEEECCCEEEEEC----------------------CCEEEEECCEEECTTCCEEEEEEEESS
T ss_pred             ChhhCEEEEEEEEECCCCceEECCCEEEEEECCCCCcCccceeEEeecCCCccceeEEcCCCeEEcCCCeEEEEEEEeCC
Confidence            999999999999986542   22345666653211000              0111122233457889999999999887


Q ss_pred             C--CCeEEEEEC--CEec------ccC---------CcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCC
Q psy7036         140 P--APTVIWSHS--GVQV------KED---------KRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNEL  195 (254)
Q Consensus       140 ~--~~~~~W~~~--~~~~------~~~---------~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~  195 (254)
                      +  .+.+.|+|+  +..+      ...         ...++....++......|.|.+++.+|+|.|+|.+.|..
T Consensus       162 ~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~  236 (256)
T 3ux9_B          162 TFSSYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCARYIDF  236 (256)
T ss_dssp             CGGGSEEEEEEECTTCCEEEEEEECSSSSCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEETT
T ss_pred             cccccEEEEEEECCCCCcEEEEEEccCCCceecCccccceEEEEecCCCCEEEEEECCCChhhCEEEEEEEEcCC
Confidence            6  678999986  2211      000         001222222211223469999999999999999999864

>4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain, human constant...; natural killer T cell receptor, immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B 4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B 3qjh_B 3qiw_D* 3qiu_D

Probab=99.88  E-value=1.2e-21  Score=142.26  Aligned_cols=187  Identities=11%  Similarity=0.159  Sum_probs=119.9

Q ss_pred             CCeeEeCCCceeecCCCeEEEEEEEeeCCCCceEEEe--------------CCEEeeeC----CcceEEEeecCCcceEE
Q psy7036           8 APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFR--------------GETQLSED----TRTVMKTTPIGTNKYLV   69 (254)
Q Consensus         8 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~--------------~~~~~~~~----~~~~~~~~~~~~~~~~~   69 (254)
                      .+.+++.|..+.+.+|++++|.| ..+.+.+.+.|||              ++......    .++.+  ...  ....+
T Consensus         2 ~~~v~~~p~~v~v~~G~~v~L~C-~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~--~~~--~~~~~   76 (245)
T 4ei6_B            2 GPKVLQIPSHQIIDMGQMVTLNC-DPVSNHLYFYWYKQILGQQMEFLVNFYNGKVMEKSKLFKDQFSV--ERP--DGSYF   76 (245)
T ss_dssp             CCCCEEECSEEEEETTCCEEEEE-ECCTTCCEEEEEEEETTTEEEEEEEEETTEEEEECTTCCTTEEE--ECC--TTSCE
T ss_pred             CcceEeCCceEEecCCCCEEEEE-EcCCCCCEEEEEEECCCCCcEEEEEECCCceeccCCCccCCEEE--Eec--cCceE
Confidence            35677888889999999999999 6567888999998              22222211    22222  221  12345


Q ss_pred             EEEEeccCCCCCeEEEEEEEcCC----CceEEEEEEEEeccccCCCCCccc-cCCCeeeecCCCeEEEEEEEeeC-CCC-
Q psy7036          70 ALELDDVIETDAGLYKVKAKNKM----GEVAASINLNFSREQIDGLAPTFL-KKPSIRQEDDGKRLLFECRIQAD-PAP-  142 (254)
Q Consensus        70 ~l~i~~~~~~d~G~Y~C~~~~~~----~~~~~~~~l~v~~~~~~~~~~~~~-~~~~~~~~~~g~~~~l~C~~~~~-~~~-  142 (254)
                      +|.|.+++.+|+|.|.|.+.+..    ........|.|........+|.+. ..+....+..|+.+.|.|.+.+. |.+ 
T Consensus        77 sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~g~~v~l~C~~~g~~p~~~  156 (245)
T 4ei6_B           77 TLKIQPTALEDSAVYFCASSFWGAYAEQFFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHV  156 (245)
T ss_dssp             EEEECSCCGGGCEEEEEEEECSSTTCCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCE
T ss_pred             EEEECCCCHhHCEEEEEEEccCCCcceEEEcCCcEEEEecccCCCCCceEEEeCCCcccccCCCceEEEEEEeeEeCCCe
Confidence            89999999999999999998532    222334556665311111233322 22333334568999999999884 444 


Q ss_pred             eEEEEECCEecccCCcceEEE-------cCCCCceeeEEEEccCCCCC-ceeEEEEEEcCCCcce
Q psy7036         143 TVIWSHSGVQVKEDKRHKFSI-------DKDGHSYFASLEIIDVTIED-AGKYKVTAKNELGESN  199 (254)
Q Consensus       143 ~~~W~~~~~~~~~~~~~~~~~-------~~~~~~~~~~l~i~~~~~~d-~G~y~C~~~~~~~~~~  199 (254)
                      .+.|+++|..+..........       ....+...+.|.|.....+| .|.|+|.|.|......
T Consensus       157 ~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~g~ytC~v~~~~l~~~  221 (245)
T 4ei6_B          157 ELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLSEN  221 (245)
T ss_dssp             EEEEEETTEEECTTEEECSSCEESSTTSTTCCEEEEEEEEEEHHHHSCTTCEEEEEEEECCBCTT
T ss_pred             EEEEEECCEECCCCcccccccccccccCCCCCEEEEEEEEEcHHHhccCCCeEEEEEEECCCCCc
Confidence            799999998876432211000       11222334568888888778 8999999999765444

>2xqy_G A13-D6.3 monoclonal antibody, envelope glycoprotein H; immune system-viral protein complex, envelope protein; HET: NAG; 2.05A {Mus musculus}

Probab=99.88  E-value=2e-21  Score=142.12  Aligned_cols=185  Identities=12%  Similarity=0.205  Sum_probs=116.4

Q ss_pred             EeCCCceeecCCCeEEEEEEEeeCC--CCceEEEeCC--EE---ee-e-------------CCcceEEEeecCCcceEEE
Q psy7036          12 TQKPQLRQEDEGNRLIFECQLLCNP--KPDIVWFRGE--TQ---LS-E-------------DTRTVMKTTPIGTNKYLVA   70 (254)
Q Consensus        12 ~~~~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~~--~~---~~-~-------------~~~~~~~~~~~~~~~~~~~   70 (254)
                      ...|....+.+|++|+|.|.+.+.+  .+.+.|||+.  ..   +. .             ..++.+...  . ......
T Consensus        10 ~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~--~-~~~~~s   86 (261)
T 2xqy_G           10 LQQPGAELVKPGASVKMSCKASGYSFTSYWMNWVKQRPGRGLEWIGRIDPSDNETHYNQDFKDKVTLTVD--K-SSSTVY   86 (261)
T ss_dssp             EECCSEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEE--G-GGTEEE
T ss_pred             EECCCCEEEcCCCCEEEEEEeCCcccCCceEEEEEeCCCCCcEEEEEEecCCCceeeCCccCCcEEEEec--C-CCCEEE
Confidence            3456788899999999999998765  6789999863  21   11 0             112222211  1 123458


Q ss_pred             EEEeccCCCCCeEEEEEEEcCCCc---eEEEEEEEEeccccCCCCCccccCCCeeeecCCCeEEEEEEEeeC-CCC-eEE
Q psy7036          71 LELDDVIETDAGLYKVKAKNKMGE---VAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQAD-PAP-TVI  145 (254)
Q Consensus        71 l~i~~~~~~d~G~Y~C~~~~~~~~---~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~-~~~  145 (254)
                      |.|.+++.+|+|.|.|.+.+..+.   ......|.|...  ...+|.+........+..|+.++|.|.+.+. |.+ .+.
T Consensus        87 L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~--~~~~P~v~~~~p~~~v~~g~~v~L~C~~~g~~P~~i~v~  164 (261)
T 2xqy_G           87 IQLSSLTSEDSAVYYCGRLGYVYGFDYWGQGTTLTVSSA--KTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLT  164 (261)
T ss_dssp             EEECSCCGGGCEEEEEEEECTTSSEEEECCCEEEEECSS--CCBCCEEEEECCCCC--CCSEEEEEEEEEEEBSSCCEEE
T ss_pred             EEEcCCCcccCeEEEEEEecCCCcceEECCCEEEEEccC--CCCCCeEEEeCCCccccCCCcEEEEEEEEeEeCCCCEEE
Confidence            999999999999999999986431   112356676531  1123333322212235679999999999875 666 899


Q ss_pred             EEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcceEEEE
Q psy7036         146 WSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATIS  203 (254)
Q Consensus       146 W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~  203 (254)
                      |++++..+......... ....+...+.|.|.....+| |.|+|.|.|..........
T Consensus       165 W~k~g~~~~~~~~~~~~-~~g~~~~~s~L~i~~~~~~~-g~YtC~v~n~~~~~~~~~~  220 (261)
T 2xqy_G          165 WNSGSLSSGVHTFPAVL-QSDLYTLSSSVTVTSSTWPS-QSITCNVAHPASSTKVDKK  220 (261)
T ss_dssp             EGGGTCCTTEEECCCEE-ETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGTEEEEEE
T ss_pred             EecCCCcCceEecCcee-cCCcEEEEEEEEEeccccCC-CEEEEEEEECCCCccEEEE
Confidence            99998765321111111 12222234689999888878 9999999997655444433

>3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane, immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B* 3q5t_A

Probab=99.88  E-value=3.5e-21  Score=139.43  Aligned_cols=186  Identities=12%  Similarity=0.241  Sum_probs=119.3

Q ss_pred             CeeEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeC--------------CEEeee---CCcceEEEeecCCcceEEEE
Q psy7036           9 PSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRG--------------ETQLSE---DTRTVMKTTPIGTNKYLVAL   71 (254)
Q Consensus         9 p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~--------------~~~~~~---~~~~~~~~~~~~~~~~~~~l   71 (254)
                      +.+++.|..+.+.+|++|+|.|.+.+ +.+.+.|||.              +.....   ..++.+..  .  ....++|
T Consensus         3 ~~v~~~p~~v~v~~G~~v~L~C~~~~-~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~--~~~~~sL   77 (240)
T 3q5y_A            3 SGVVQSPRHIIKEKGGRSVLTCIPIS-GHSNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQ--F--DDYHSEM   77 (240)
T ss_dssp             CCCEEECSEEEEETTCCEEEEEECCT-TCCEEEEEEECTTSCCEEEEEEETTEEEEECSCCTTEEEEE--C--TTSCEEE
T ss_pred             cccccCcceeeecCCCcEEEEEEeCC-CCceEEEEEECCCCCCEEEEEEcCCccccCcccCCeEEEEe--C--CCCEEEE
Confidence            45677888889999999999999874 7789999982              221111   12222221  1  1234589


Q ss_pred             EEeccCCCCCeEEEEEEEcCC---CceEEEEEEEEeccccCCCCCccc-cCCCeeeecCCCeEEEEEEEee-CCCC-eEE
Q psy7036          72 ELDDVIETDAGLYKVKAKNKM---GEVAASINLNFSREQIDGLAPTFL-KKPSIRQEDDGKRLLFECRIQA-DPAP-TVI  145 (254)
Q Consensus        72 ~i~~~~~~d~G~Y~C~~~~~~---~~~~~~~~l~v~~~~~~~~~~~~~-~~~~~~~~~~g~~~~l~C~~~~-~~~~-~~~  145 (254)
                      .|.+++.+|+|.|.|.+.+..   ........|.|........+|.+. ..+....+..|+.+.|.|.+.+ .|.+ .+.
T Consensus        78 ~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~  157 (240)
T 3q5y_A           78 NMSALELEDSAMYFCASSLRWGDEQYFGPGTRLTVLEDLRNVTPPKVSLFEPSKAEIANKQKATLVCLARGFFPDHVELS  157 (240)
T ss_dssp             EECSCCGGGCEEEEEEEESSTTBCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEE
T ss_pred             EECcCChhHCEEEEEEEccCCCcceEEcCCEEEEEeccccCCCCCeeEEeCCchhhcccCCceEEEEEEeeEECCCeEEE
Confidence            999999999999999997322   122334456665311111333332 2233334456899999999988 5555 789


Q ss_pred             EEECCEecccCCcce--EEEcCCC-CceeeEEEEccCCCCC-ceeEEEEEEcCCCcce
Q psy7036         146 WSHSGVQVKEDKRHK--FSIDKDG-HSYFASLEIIDVTIED-AGKYKVTAKNELGESN  199 (254)
Q Consensus       146 W~~~~~~~~~~~~~~--~~~~~~~-~~~~~~l~i~~~~~~d-~G~y~C~~~~~~~~~~  199 (254)
                      |+++|..+.......  .....++ +...+.|.|.....+| .|.|+|.|.|......
T Consensus       158 W~~~g~~l~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~g~YtC~v~~~~~~~~  215 (240)
T 3q5y_A          158 WWVNGKEVHSGVSTDPQAYKESNYSYSLSSRLRVSATFWHNPRNHFRCQVQFHGLSEE  215 (240)
T ss_dssp             EEETTEEECTTEEECSSCEEEETTEEEEEEEEEEEHHHHSCTTCEEEEEEEECCBCTT
T ss_pred             EEECCEECcCcEecCCceeeCCCCCEEEEEEEEECHHHhccCCCEEEEEEEcCCCCCc
Confidence            999999886432211  1122222 2334568999888888 6799999999765543

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A*

Probab=99.88  E-value=5.1e-22  Score=146.00  Aligned_cols=160  Identities=16%  Similarity=0.183  Sum_probs=117.0

Q ss_pred             CCeeEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEE
Q psy7036           8 APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVK   87 (254)
Q Consensus         8 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~   87 (254)
                      +|.+..  ....+.+|+.++|.|.+.  |.+.++|  +|..+....             ....|.|..+..+|.|.|+|.
T Consensus       100 ~p~~~~--~~~~v~~G~~v~l~C~~~--p~~~i~W--~g~~~~~~~-------------~~~~l~i~~~~~~~~g~Y~C~  160 (265)
T 2oz4_A          100 APNVIL--TKPEVSEGTEVTVKCEAH--PRAKVTL--NGVPAQPLG-------------PRAQLLLKATPEDNGRSFSCS  160 (265)
T ss_dssp             CCEEEE--SCSEEETTCEEEEEEECC--TTSEEEE--SSCSSSCCS-------------SEECCEEECCGGGTTEEEEEE
T ss_pred             Cceeec--CCceecCCCcEEEEEEcc--CCCEEEE--CCEEccCCC-------------CcEEEEEccccccCCceEEEE
Confidence            345543  345678999999999998  8899999  776652211             112688999999999999999


Q ss_pred             EEcCC-CceE---EEEEEEEeccccCCCCCccccCCCeeeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEE
Q psy7036          88 AKNKM-GEVA---ASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSI  163 (254)
Q Consensus        88 ~~~~~-~~~~---~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~  163 (254)
                      +.|.. |...   ..+.|.|...+..    .....+....+.+|+.+.|.|.+.|.|.+.+.|++++..+          
T Consensus       161 a~n~~~g~~~~~s~~~~l~V~~~p~~----~~~~~p~~~~v~~g~~~~l~C~~~g~P~p~i~W~~~~~~~----------  226 (265)
T 2oz4_A          161 ATLEVAGQLIHKNQTRELRVLYGPRL----DERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFP----------  226 (265)
T ss_dssp             EEEECSSSEEEEEEEEEEEEEEEEEC----CGGGSCSEEEEETTCEECCCCCCEEESCCEEEEEETTTEE----------
T ss_pred             EEcCCCCCcccccccEEEEEEeCCcc----ccccCCCccEEcCCCeEEEEeECccCCCCeEEEEECCccc----------
Confidence            98544 5544   5667777632211    1122344567888999999999999999999999998721          


Q ss_pred             cCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcceEEEEEEEe
Q psy7036         164 DKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFD  207 (254)
Q Consensus       164 ~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~v~  207 (254)
                      ...+     .+.  .++.+|+|.|+|.|.|..|.....+.|.|.
T Consensus       227 ~~~g-----~~~--~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~  263 (265)
T 2oz4_A          227 LPIG-----ESV--TVTRDLEGTYLCRARSTQGEVTREVTVNVL  263 (265)
T ss_dssp             CCTT-----SCE--ECCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             CCCC-----cEE--EeehhhCeEEEEEEECCCCcEEEEEEEEEe
Confidence            1122     121  377899999999999999999888888886

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}

Probab=99.88  E-value=1.5e-21  Score=145.23  Aligned_cols=172  Identities=10%  Similarity=0.107  Sum_probs=118.4

Q ss_pred             eeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcCCCceE-
Q psy7036          18 RQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVA-   96 (254)
Q Consensus        18 ~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~-   96 (254)
                      ..+.+|+++.|.|.+. .|.+.++|++++........  .  ...   .   .+.    ...|+|.|+|.+.+..+... 
T Consensus       105 ~~v~~G~~v~l~C~~~-~p~~~v~w~~~~~~~~~~~~--~--~~~---~---~~~----~~~d~G~Y~C~a~n~~~~~~s  169 (289)
T 3mjg_X          105 IFLTEITEITIPCRVT-DPQLVVTLHEKKGDVALPVP--Y--DHQ---R---GFS----GIFEDRSYICKTTIGDREVDS  169 (289)
T ss_dssp             EEESSCCCEEECCCBS-CTTSCEEEEESSCCSCCCCC--E--ETT---T---EEE----ECCCSSEEEEEEEETTEEEEC
T ss_pred             EEeecCCeEEEEeEcC-CCCceEEEEeCCCCCcccee--e--cCC---c---Cee----eeccCcEEEEEEEeCCceeee
Confidence            5688999999999998 77889999987522111100  0  000   0   111    36799999999997665432 


Q ss_pred             EEEEEEEeccccCCCCCccccCCCeeeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCC-CCceeeEEE
Q psy7036          97 ASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKD-GHSYFASLE  175 (254)
Q Consensus        97 ~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~  175 (254)
                      ....|.|...    .+|.+...+....+..|+.+.|.|.+.+.|.+.+.|++++...............+ .....+.|.
T Consensus       170 ~~~~l~v~~~----~~p~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~  245 (289)
T 3mjg_X          170 DAYYVYRLQV----SSINVSVNAVQTVVRQGENITLMCIVIGNEVVNFEWTYPRKESGRLVEPVTDFLLDMPYHIRSILH  245 (289)
T ss_dssp             CCEEEEECCC----CCCCCEEEESCSEEETTSCEEEEEEEESCSSBEEEEECTTSSSSCCCCCEEEESCTTTTEEEEEEE
T ss_pred             eeEEEEecCC----CCCCcEEeCCcceeEcCCCEEEEEEECCCCCcceEEEcCCccCCCcccccccccCCcceEEEEEEE
Confidence            3345666421    24444444444567899999999999999999999998776543322211112111 123446899


Q ss_pred             EccCCCCCceeEEEEEEcCCCcceEEEEEEEec
Q psy7036         176 IIDVTIEDAGKYKVTAKNELGESNATISLNFDS  208 (254)
Q Consensus       176 i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~v~~  208 (254)
                      |.++..+|.|.|+|.|.|..|....+..|.|..
T Consensus       246 I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~v~~  278 (289)
T 3mjg_X          246 IPSAELEDSGTYTCNVTESVNDHQDEKAINITV  278 (289)
T ss_dssp             ESSCCSSCCEEEEEEEEETTTTEEEEEEEEEEE
T ss_pred             EcccChhhCcEEEEEeecCCCCceeEEEEEEEE
Confidence            999999999999999999999999888888875

>2gjj_A A21 single-chain antibody fragment against ERBB2; IG family, SCFV, immune system; 2.10A {Mus musculus} PDB: 3h3b_C

Probab=99.88  E-value=5.3e-21  Score=140.33  Aligned_cols=181  Identities=15%  Similarity=0.230  Sum_probs=116.8

Q ss_pred             CCCeeEeCCCceeecCCCeEEEEEEEeeCC------CCceEEEeC--CE---Eeee---------CCcceEEEeecCCcc
Q psy7036           7 FAPSFTQKPQLRQEDEGNRLIFECQLLCNP------KPDIVWFRG--ET---QLSE---------DTRTVMKTTPIGTNK   66 (254)
Q Consensus         7 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~------~~~v~W~~~--~~---~~~~---------~~~~~~~~~~~~~~~   66 (254)
                      ..+.+.+.|..+.+.+|++|+|.|.+.+.+      .+.+.|||+  +.   .+..         ..++.+.  ..   .
T Consensus         4 ~~~~v~q~p~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~R~~~~--~~---~   78 (264)
T 2gjj_A            4 ADIVLTQTPSSLPVSVGEKVTMTCKSSQTLLYSNNQKNYLAWYQQKPGQSPKLLISWAFTRKSGVPDRFTGS--GS---G   78 (264)
T ss_dssp             CCCCEEEECSEEEEETTCCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEE--EE---T
T ss_pred             cccceEecCCeEEecCCCcEEEEeEcCCcccccccCCceEEEEEECCCCCcEEEEEecccCCCCCCccEEEe--cC---C
Confidence            346788889899999999999999998776      678999984  22   1111         1222222  11   1


Q ss_pred             eEEEEEEeccCCCCCeEEEEEEEcCCCc-eEEEEEEEEecccc------------CCCCCcc-ccCCCeeeecCCCeEEE
Q psy7036          67 YLVALELDDVIETDAGLYKVKAKNKMGE-VAASINLNFSREQI------------DGLAPTF-LKKPSIRQEDDGKRLLF  132 (254)
Q Consensus        67 ~~~~l~i~~~~~~d~G~Y~C~~~~~~~~-~~~~~~l~v~~~~~------------~~~~~~~-~~~~~~~~~~~g~~~~l  132 (254)
                      ....|.|.+++.+|+|.|.|.+.+..+. ......|.|...+.            ....+.+ ...+....+.+|+.++|
T Consensus        79 ~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L  158 (264)
T 2gjj_A           79 TDFTLTIGSVKAEDLAVYYCQQYSNYPWTFGGGTRLEIKRGGGGSGGGGSGGGGSGGGGSEVQLQQSGPEVVKTGASVKI  158 (264)
T ss_dssp             TEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEECC-------------------CCEEEECCCEEECTTCCEEE
T ss_pred             CEEEEEECCCCHHHCEEEEEEEecCCccEecCCEEEEEEcCCcccccccccccccccccCcEEEeCCCCEEEcCCCcEEE
Confidence            2348999999999999999999986542 22345667753210            0001111 12222346889999999


Q ss_pred             EEEEeeCCC--CeEEEEECC--Ee---cc---c-----------CCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEE
Q psy7036         133 ECRIQADPA--PTVIWSHSG--VQ---VK---E-----------DKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTA  191 (254)
Q Consensus       133 ~C~~~~~~~--~~~~W~~~~--~~---~~---~-----------~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~  191 (254)
                      .|.+.+.+.  +.+.|+|+.  ..   +.   .           ..+..+.....  .....|.|.+++.+|+|.|.|.+
T Consensus       159 ~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~--~~~~~L~I~~v~~~DsG~Y~C~a  236 (264)
T 2gjj_A          159 SCKASGYSFTGYFINWVKKNSGKSPEWIGHISSSYATSTYNQKFKNKAAFTVDTS--SSTAFMQLNSLTSEDSADYYCVR  236 (264)
T ss_dssp             EEEEESSCGGGSEEEEEEECTTSCCEEEEEEETTTCCEEECGGGTTTEEEEEETT--TTEEEEEECSCCGGGCEEEEEEE
T ss_pred             EEEEeCCccCCeEEEEEEECCCCCcEEEEEEeccCcccccCcccCCceEEEEcCC--CCEEEEEECcCCcccCEEEEEEE
Confidence            999988764  789999963  21   10   0           11111211111  11348999999999999999999


Q ss_pred             EcC
Q psy7036         192 KNE  194 (254)
Q Consensus       192 ~~~  194 (254)
                      .|.
T Consensus       237 ~n~  239 (264)
T 2gjj_A          237 SGN  239 (264)
T ss_dssp             ECS
T ss_pred             ecC
Confidence            985

>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A

Probab=99.88  E-value=4.6e-22  Score=150.39  Aligned_cols=185  Identities=16%  Similarity=0.208  Sum_probs=116.3

Q ss_pred             eeEeCCCceeecCCCeEEEEEEEeeC-CCC---ceEEEeCC-EEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEE
Q psy7036          10 SFTQKPQLRQEDEGNRLIFECQLLCN-PKP---DIVWFRGE-TQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLY   84 (254)
Q Consensus        10 ~~~~~~~~~~v~~g~~v~l~C~~~~~-~~~---~v~W~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y   84 (254)
                      .+...|....+.+|++++|.|.+.+. |.+   .++|||++ ..+..... .......+.....+.|.|.+++..|+|.|
T Consensus       115 v~~~~p~~~~v~~G~~v~L~C~~~g~~P~p~~~~i~W~k~~g~~~~~~~~-~~~~~~~g~~~~~~~L~I~~~~~~D~G~Y  193 (323)
T 2wqr_A          115 AYLSRPSPFDLFIRKSPTITCLVVDLAPSKGTVQLTWSRASGKPVNHSTR-KEEKQRNGTLTVTSTLPVGTRDWIEGETY  193 (323)
T ss_dssp             EEECCCCHHHHHTSSCCEEEEEEEEECCCSSCCEEEEEETTCCCCCCCCC-EEEECTTSCEEEEEEEECCHHHHHTTCCE
T ss_pred             EEEcCCCHHHhccCCeEEEEEEEeccCCCCCceEEEEEECCCcccccccC-CCccCCCCCEEEEEEEEECHHHccCCCCE
Confidence            34555666668899999999999875 555   89999975 43322111 11111111112344799999999999999


Q ss_pred             EEEEEcCCCceEEEEEEEEeccccCCCCCccccCCCeeeecCCCeEEEEEEEeeC-CCC-eEEEEECCEecccCCcc--e
Q psy7036          85 KVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQAD-PAP-TVIWSHSGVQVKEDKRH--K  160 (254)
Q Consensus        85 ~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~-~~~W~~~~~~~~~~~~~--~  160 (254)
                      +|.+.|..+....  .+.|........+|.+...........|+.+.|.|.+.+. |.+ .+.|+|++..+......  .
T Consensus       194 ~C~a~n~~~~~~~--~~~v~~~~~~~~~P~v~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~  271 (323)
T 2wqr_A          194 QCRVTHPHLPRAL--MRSTTKTSGPRAAPEVYAFATPEWPGSRDKRTLACLIQNFMPEDISVQWLHNEVQLPDARHSTTQ  271 (323)
T ss_dssp             EEEEECTTSSSCE--EEEECCCCSCCBCCEEEEEECCCCTTCTTEEEEEEEEEEEBSSCCEEEEEETTEECCGGGEEECC
T ss_pred             EEEEECCCCCCCe--eeEEEccCCCCCCCEEEEeCCChHHhcCCcEEEEEEeeeeeCCCcEEEEEECCEECCCCceeecC
Confidence            9999987644322  3333211001134433222111112239999999999884 443 79999999987543111  0


Q ss_pred             EEEcCCC-CceeeEEEEccCCCCCceeEEEEEEcCCCc
Q psy7036         161 FSIDKDG-HSYFASLEIIDVTIEDAGKYKVTAKNELGE  197 (254)
Q Consensus       161 ~~~~~~~-~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~  197 (254)
                      .....++ +...+.|.|.....+|.|.|+|.|.|....
T Consensus       272 ~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~  309 (323)
T 2wqr_A          272 PRKTKGSGFFVFSRLEVTRAEWEQKDEFICRAVHEAAS  309 (323)
T ss_dssp             CEECSSSSEEEEEEEEEEHHHHHHCCCEEEEEECTTST
T ss_pred             cccCCCCcEEEEEEEEEChHHccCCCEEEEEEEeCCCC
Confidence            1112222 234467999999999999999999998876

>2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN; 1.75A {Gallus gallus}

Probab=99.87  E-value=8.8e-22  Score=141.66  Aligned_cols=187  Identities=11%  Similarity=0.114  Sum_probs=119.7

Q ss_pred             CCee-EeCCCceeecCCCeEEEEEEEeeC-CC-C-ceEEEeCCEEe-eeCCcceEEEeecCCcceEEEEEEeccCCCCCe
Q psy7036           8 APSF-TQKPQLRQEDEGNRLIFECQLLCN-PK-P-DIVWFRGETQL-SEDTRTVMKTTPIGTNKYLVALELDDVIETDAG   82 (254)
Q Consensus         8 ~p~~-~~~~~~~~v~~g~~v~l~C~~~~~-~~-~-~v~W~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G   82 (254)
                      +|.+ ...|....+.+|++++|.|.+.+. |. + .++|+++|..+ ..... ......++.....+.|.|.+++..|+|
T Consensus        12 ~P~v~~~~p~~~~v~~G~~v~L~C~~~g~~P~~p~~v~W~~~g~~~~~~~~~-~~~~~~~g~~~~~s~L~I~~~~~~D~g   90 (231)
T 2w59_A           12 PIQLYAIPPSPGELYISLDAKLRCLVVNLPSDSSLSVTWTREKSGNLRPDPM-VLQEHFNGTYSASSAVPVSTQDWLSGE   90 (231)
T ss_dssp             CCEEEEECCCHHHHHTSCCCEEEEEEEEESCCTTCEEEEECSSSSCCCCCCC-EEEECTTSCEEEEEEEECCHHHHHTTC
T ss_pred             CCEEEEeCcChhhcccCCceEEEEEEeCccCCCCeEEEEEcCCeeccccccc-cceECCCCcEEEEEEEEecchhccCCC
Confidence            5554 456777778899999999999884 63 4 99999998776 32211 111112222233457999999999999


Q ss_pred             EEEEEEEcCCCceEEEEEEEEeccccCCCCCcccc-CCCeeeecCCCeEEEEEEEeeC-C-CCeEEEEECCEecccCCcc
Q psy7036          83 LYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLK-KPSIRQEDDGKRLLFECRIQAD-P-APTVIWSHSGVQVKEDKRH  159 (254)
Q Consensus        83 ~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~-~~~~~~~~~g~~~~l~C~~~~~-~-~~~~~W~~~~~~~~~~~~~  159 (254)
                      .|+|.+.+..+....  .+.|........+|.+.. .+....+ .+..+.|.|.+.++ | .+.+.|+|+|..+......
T Consensus        91 ~Y~C~~~~~~~~~~~--~~~v~~~~~~~~~P~v~v~~~~~~~~-~~~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~  167 (231)
T 2w59_A           91 RFTCTVQHEELPLPL--SKSVYRNTGPTTPPLIYPFAPHPEEL-SLSRVTLSCLVRGFRPRDIEIRWLRDHRAVPATEFV  167 (231)
T ss_dssp             CEEEEEECTTCSSCE--EEEECCCCSCCBCCEEEEECCCGGGG-GSSEEEEEEEEEEEBSSCCEEEEEETTEECCGGGCE
T ss_pred             EEEEEEEcCCCCCce--EEEEecCCCCCcCCEEEEeCCCHHHh-ccCceEEEEEEEeccCCCcEEEEEECCEECCCcccc
Confidence            999999987754333  333321100112333322 2221122 24579999999985 4 3689999999988654311


Q ss_pred             e--EEEc--------CC-C-CceeeEEEEccCCCCCceeEEEEEEcCCCcc
Q psy7036         160 K--FSID--------KD-G-HSYFASLEIIDVTIEDAGKYKVTAKNELGES  198 (254)
Q Consensus       160 ~--~~~~--------~~-~-~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~  198 (254)
                      .  ....        .+ + +...+.|.|.....+|.|.|+|.|.|.....
T Consensus       168 ~~~~~~~~~~~~~~~~d~gt~~~~s~L~i~~~~~~~~g~YtC~v~n~~l~~  218 (231)
T 2w59_A          168 TTAVLPEERTANGAGGDGDTFFVYSKMSVETAKWNGGTVFACMAVHEALPM  218 (231)
T ss_dssp             ECCCEECCTTSCC---CCCCEEEEEEEEEEHHHHHTTCCEEEEEECTTSTT
T ss_pred             cCccccCcccccccCCCCCeEEEEEEEEEeHHHcCCCCcEEEEEEcCCCCC
Confidence            1  1222        22 2 2345678888888889999999999987654

>3bn9_D E2 FAB heavy chain; antibody-protease complex, protein-protein complex, enzyme- inhibitor complex, disease mutation, glycoprotein, hydrolase; 2.17A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 3kr3_H 2xtj_E

Probab=99.87  E-value=2.3e-21  Score=141.27  Aligned_cols=188  Identities=11%  Similarity=0.181  Sum_probs=104.2

Q ss_pred             CCceeecCCCeEEEEEEEeeCC--CCceEEEeCC--E---Ee-ee-----------CCcceEEEeecCCcceEEEEEEec
Q psy7036          15 PQLRQEDEGNRLIFECQLLCNP--KPDIVWFRGE--T---QL-SE-----------DTRTVMKTTPIGTNKYLVALELDD   75 (254)
Q Consensus        15 ~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~~--~---~~-~~-----------~~~~~~~~~~~~~~~~~~~l~i~~   75 (254)
                      |....+.+|++|+|.|.+.+.+  .+.+.|||..  .   .+ ..           ....++....+ .......|.|.+
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~-~~~~~~sL~I~~   85 (257)
T 3bn9_D            7 SGGGLVKPGGSLRLSCAASGFTFSSYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRD-NSKNTLYLQMSS   85 (257)
T ss_dssp             ECCEEECTTCEEEEEEEEESSCGGGCCEEEEEECTTSCEEEEEEECSSSCCEEECGGGTTTEEEEEE-TTTTEEEEEEES
T ss_pred             cCCEEEcCCCcEEEEEEeccccCCCceEEEEEECCCCCeEEEEEEecCCCceecCcccCCceEEEec-CCCCEEEEEECC
Confidence            4566899999999999998765  5789999853  1   11 00           00112222111 112345899999


Q ss_pred             cCCCCCeEEEEEEEcCCC----------c---eEEEEEEEEeccccCCCCCccccCCCeeeecCCCeEEEEEEEeeC-CC
Q psy7036          76 VIETDAGLYKVKAKNKMG----------E---VAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQAD-PA  141 (254)
Q Consensus        76 ~~~~d~G~Y~C~~~~~~~----------~---~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~  141 (254)
                      ++.+|+|.|.|.+.+..+          .   ......|.|...  ...+|.+........+..|+.++|.|.+.+. |.
T Consensus        86 v~~~DsG~Y~C~~~~~~g~~~~~~~~~~~~~~~~~~t~L~V~~~--~~~~P~v~~~~p~~~~~~g~~v~L~C~~~g~~P~  163 (257)
T 3bn9_D           86 LRAEDTAVYYCARPYLTYPQRRGPQNVSPFDNWGQGTMVTVSSA--STKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPE  163 (257)
T ss_dssp             CCGGGCEEEEEEEECCSSTTSCCCCTTCCEEEECCCEEEEECSS--CCBCCEECCCCC-----------CCCEEEEEBSS
T ss_pred             CChhhCEEEEEEEecCCCcccccccccceeeeeCCcEEEEecCC--CCcCCcEEEecCcccccCCCcEEEEEEEeeEECC
Confidence            999999999999998754          1   112346677531  1123443332222235678999999999885 76


Q ss_pred             C-eEEEEECCEecccCCcceEEEcCCC-CceeeEEEEccCCCCCceeEEEEEEcCCCcceEEEEEEEe
Q psy7036         142 P-TVIWSHSGVQVKEDKRHKFSIDKDG-HSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFD  207 (254)
Q Consensus       142 ~-~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~v~  207 (254)
                      + .+.|++++..+........ ...++ +...+.|.|.+...+| |.|+|.|.|..........+...
T Consensus       164 pi~v~W~k~g~~~~~~~~~~~-~~~~g~y~~~s~L~I~~~~~~~-g~YtC~v~n~~~~~~~~~~i~~~  229 (257)
T 3bn9_D          164 PVTVSWNSGALTSGVHTFPAV-LQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKVEPK  229 (257)
T ss_dssp             CCEEEETTTTCCSSCEECCCE-ECTTSCEEEEEECCCC--------CEEEEEEEGGGTEEEEEEECCC
T ss_pred             CcEEEEeeCCCcCCcEecCCe-EcCCCCEEEEEEEEEcccccCC-CeEEEEEEecCCCcCEEEEEcCc
Confidence            6 8999999876432111111 12222 2334578888887778 99999999976555555544433

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B

Probab=99.87  E-value=9.9e-22  Score=134.63  Aligned_cols=155  Identities=10%  Similarity=0.131  Sum_probs=106.5

Q ss_pred             CceeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCc----------ceEEEeecCCcceEEEEEEeccCCCCCeEEE
Q psy7036          16 QLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTR----------TVMKTTPIGTNKYLVALELDDVIETDAGLYK   85 (254)
Q Consensus        16 ~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~   85 (254)
                      +.+.+.+|++|+|.|.+. .|.+.+.|++++..+.....          .++.....     ..+|.|.+++..|+|.|+
T Consensus         3 ~~v~~~~G~~VtL~c~~~-~~~~~i~W~~~~~~i~~~~~~~~~~~~~~~~R~~~~~~-----~~sL~I~~v~~~DsG~Y~   76 (171)
T 1ccz_A            3 QQIYGVVYGNVTFHVPSN-VPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTV-----SGSLTIYNLTSSDEDEYE   76 (171)
T ss_dssp             EEEEEETTCCEEECCCCS-SCCSCEEEEETTEEEEEEETTEEEECGGGTTSEEECTT-----TCCEEECSCCGGGCEEEE
T ss_pred             cEEEEEcCCCEEEcCCCC-CCcceEEEEeCCcEEEEEcCCCcccccccCCcEEEeCC-----CCeEEECCCChhhCceEE
Confidence            346788999999999985 47889999999875432111          11211111     127999999999999999


Q ss_pred             EEEEcCCCceEEEEEEEEeccccCCCCCccccCCCeeeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcC
Q psy7036          86 VKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDK  165 (254)
Q Consensus        86 C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~  165 (254)
                      |.+.+..+  ...+.|.|....   ..|.+.       ..... ..|.|.+.+.|.+.+.|++++..+......      
T Consensus        77 C~~~n~~~--~~~~~L~V~~~~---~~p~i~-------~~~~~-~~L~C~~~~~p~p~i~W~~~~~~l~~~~~~------  137 (171)
T 1ccz_A           77 MESPNITD--TMKFFLYVLEMV---SKPMIY-------WECSN-ATLTCEVLEGTDVELKLYQGKEHLRSLRQK------  137 (171)
T ss_dssp             EECTTCCS--CEEEEEEEECCC---CCCEEE-------EETTT-TEEEEECSSCSSCEEEEEETTEEEEEESSS------
T ss_pred             EEEeCCCC--cEEEEEEEECcC---CCCEEE-------EecCC-cEEEEEeCCCCCcEEEEEECCEECcCCcce------
Confidence            99998777  566777776311   112221       11111 278999998899999999999877532211      


Q ss_pred             CCCceeeEEEEccCCCCCceeEEEEEEcCCCcceEEEEE
Q psy7036         166 DGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISL  204 (254)
Q Consensus       166 ~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~  204 (254)
                             .+.+.  ..+|.|.|+|.|.|..+.......|
T Consensus       138 -------~l~~~--~~~~~g~Y~C~a~N~~~~~~~~~~l  167 (171)
T 1ccz_A          138 -------TMSYQ--WTNLRAPFKCKAVNRVSQESEMEVV  167 (171)
T ss_dssp             -------EEEEE--CSCCSSCEEEEEEETTEEEEEEECC
T ss_pred             -------EEEEe--ccCCCceEEEEEEcccCcccceeEE
Confidence                   34433  3678999999999999887665544

>3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex, immunoglobulin fold, immune receptor, membr immune system; HET: NAG; 2.55A {Homo sapiens}

Probab=99.87  E-value=1.4e-21  Score=143.85  Aligned_cols=187  Identities=12%  Similarity=0.189  Sum_probs=119.2

Q ss_pred             CCeeEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeC--CEE------------eeeC----CcceEEEeecCCcceEE
Q psy7036           8 APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRG--ETQ------------LSED----TRTVMKTTPIGTNKYLV   69 (254)
Q Consensus         8 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~--~~~------------~~~~----~~~~~~~~~~~~~~~~~   69 (254)
                      .+.++..|..+.+.+|++|+|.|.+. .+.+.+.|||.  +..            ....    .++.+  ...  ....+
T Consensus        26 ~~~v~~~p~~v~v~~G~~v~L~C~~~-~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~--~~~--~~~~~  100 (268)
T 3pl6_D           26 GAGVSQTPSNKVTEKGKYVELRCDPI-SGHTALYWYRQSLGQGPEFLIYFQGTGAADDSGLPNDRFFA--VRP--EGSVS  100 (268)
T ss_dssp             -SSCBCCCSEEEEETTCCEEEEEBCB-TTCCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEE--ECT--TSSSE
T ss_pred             CceeEeCCCEEEecCCCCEEEEEEeC-CCCceEEEEEECCCCCcEEEEEECCCCccccCCCccCcEEE--Eec--CCCEE
Confidence            45567778888999999999999986 67789999982  211            1111    22222  211  12345


Q ss_pred             EEEEeccCCCCCeEEEEEEEcC--CCceEEEEEEEEeccccCCCCCccc-cCCCeeeecCCCeEEEEEEEeeCCCC--eE
Q psy7036          70 ALELDDVIETDAGLYKVKAKNK--MGEVAASINLNFSREQIDGLAPTFL-KKPSIRQEDDGKRLLFECRIQADPAP--TV  144 (254)
Q Consensus        70 ~l~i~~~~~~d~G~Y~C~~~~~--~~~~~~~~~l~v~~~~~~~~~~~~~-~~~~~~~~~~g~~~~l~C~~~~~~~~--~~  144 (254)
                      +|.|.+++.+|+|.|+|.+.+.  .........|.|........+|.+. ..+....+..|+.++|.|.+.+.+++  .+
T Consensus       101 sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v  180 (268)
T 3pl6_D          101 TLKIQRTERGDSAVYLCATSALGDTQYFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVEL  180 (268)
T ss_dssp             EEEECSCCGGGCEEEEEEEESSSSSCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEE
T ss_pred             EEEECCCCcccCEEEEEEEecCCCceeeCCcEEEEEecCcccccCCceEEeCCCcccccCCCceEEEEEECcccCCCeEE
Confidence            8999999999999999999974  2223334566665321111234322 22333344568999999999986554  89


Q ss_pred             EEEECCEecccCCcceE------EEcCCC-CceeeEEEEccCCCCC-ceeEEEEEEcCCCcce
Q psy7036         145 IWSHSGVQVKEDKRHKF------SIDKDG-HSYFASLEIIDVTIED-AGKYKVTAKNELGESN  199 (254)
Q Consensus       145 ~W~~~~~~~~~~~~~~~------~~~~~~-~~~~~~l~i~~~~~~d-~G~y~C~~~~~~~~~~  199 (254)
                      .|+++|..+........      ....++ +...+.|.|.....+| .|.|+|.|.|......
T Consensus       181 ~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~~g~YtC~v~~~~l~~~  243 (268)
T 3pl6_D          181 SWWVNGKEVHSGVCTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYGLSEN  243 (268)
T ss_dssp             EEEESSSEECTTEEECSSCEESSTTCTTCCEEEEEEEEEEHHHHSCTTCEEEEEEEECCBCTT
T ss_pred             EEEECCEECCCCeEeccccccccccCCCCcEEEEEEEEEcHHHhccCCCEEEEEEEcCCCCCC
Confidence            99999988754321100      000122 2334578888877777 9999999999866543

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D

Probab=99.87  E-value=1.2e-21  Score=147.64  Aligned_cols=174  Identities=11%  Similarity=0.142  Sum_probs=112.2

Q ss_pred             CCeeEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEE
Q psy7036           8 APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVK   87 (254)
Q Consensus         8 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~   87 (254)
                      +|.+...+... +.+|++++|.|.+. .+.+.+.|++++..+.........    ........|.|.+++..|+|.|+|.
T Consensus       119 ~p~~~~~~~~~-v~~G~~v~L~C~~~-~~~~~~~w~k~g~~~~~~~~~~~~----~~~~~~~~L~i~~v~~~D~G~Y~C~  192 (316)
T 3vh8_G          119 KPSLLAHPGPL-VKSGERVILQCWSD-IMFEHFFLHKEGISKDPSRLVGQI----HDGVSKANFSIGPMMLALAGTYRCY  192 (316)
T ss_dssp             CCEEEEESCSE-EETTCCEEEEEEES-SCCSEEEEEETTCCSCCEEEECEE----ETTEEEEEEEECSCCGGGCEEEEEE
T ss_pred             CCeEEecCCCc-cCCCCeEEEEEcCC-CCCcEEEEEECCCccccceeeeee----cCCCceEEEEECCCChhhCceEEEE
Confidence            56666666554 88999999999995 556789999998766322111110    0112234799999999999999999


Q ss_pred             EEcCCCce-----EEEEEEEEeccccCCCCCccccCCCeeeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEE
Q psy7036          88 AKNKMGEV-----AASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFS  162 (254)
Q Consensus        88 ~~~~~~~~-----~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~  162 (254)
                      +.|..+..     ...+.|.|...   ..+|.+...+. ..+.+|+.++|.|.+. .+.+.+.|+|++..+......  .
T Consensus       193 a~n~~g~~~~s~~s~~~~l~V~~~---~~~p~i~~~~~-~~v~~G~~v~L~C~~~-~~~~~~~W~k~g~~~~~~~~~--~  265 (316)
T 3vh8_G          193 GSVTHTPYQLSAPSDPLDIVVTGP---YEKPSLSAQPG-PKVQAGESVTLSCSSR-SSYDMYHLSREGGAHERRLPA--V  265 (316)
T ss_dssp             EECTTCTTBCCCCCCCEEEEEECS---SCCCEEEEESC-SCCCTTSCCEEEEEES-SCCSEEEEEETTSSCCEEEEC--E
T ss_pred             EecCCCCccccCCCCCEEEEecCC---CCCCeEEeCCC-CeecCCCcEEEEEECC-CCCcEEEEEECCCcCCCceec--e
Confidence            99887641     34556666531   12333333322 2567899999999986 577899999998765422111  0


Q ss_pred             EcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCc
Q psy7036         163 IDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGE  197 (254)
Q Consensus       163 ~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~  197 (254)
                      .. ........|.|.+++  |+|.|+|.+.|..+.
T Consensus       266 ~~-~~~~~~~~L~i~~v~--D~G~Y~C~a~n~~~~  297 (316)
T 3vh8_G          266 RK-VNRTFQADFPLGPAT--HGGTYRCFGSFRHSP  297 (316)
T ss_dssp             EC-TTSCEEEEEECC-------CEEEEEEEBTTBT
T ss_pred             ec-cCCceeEEEEcCCcC--CCEEEEEEeecCCCc
Confidence            11 111123479999999  999999999997653

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A

Probab=99.87  E-value=3.4e-21  Score=132.94  Aligned_cols=158  Identities=15%  Similarity=0.229  Sum_probs=109.5

Q ss_pred             CCceeecCCCeEEEEEEEe--eCCCCceEEEe--CCEEeeeC--------CcceEEEeecCCcceEEEEEEeccCCCCCe
Q psy7036          15 PQLRQEDEGNRLIFECQLL--CNPKPDIVWFR--GETQLSED--------TRTVMKTTPIGTNKYLVALELDDVIETDAG   82 (254)
Q Consensus        15 ~~~~~v~~g~~v~l~C~~~--~~~~~~v~W~~--~~~~~~~~--------~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G   82 (254)
                      .+.+.+.+|++|+|.|...  +.+.+.|.|++  ++..+...        ...++....++      +|.|.+++..|+|
T Consensus         6 ~~~v~g~~G~sv~L~~~~~~~~~~~~~i~W~k~~~~~~i~~~~~~~~~~~~~~R~~~~~ng------sL~I~~v~~~DsG   79 (182)
T 1hnf_A            6 ALETWGALGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNG------TLKIKHLKTDDQD   79 (182)
T ss_dssp             CEEEEEETTSCEEECCTTCCCCSSEEEEEEEEGGGCCEEEEECGGGCEEESCTTEEECTTS------CEEECSCCGGGCE
T ss_pred             ccEEEEecCCCEEEeCCcccccCcCCEEEEEECCCCcEEEEEeCccCCCCCCCeEEECCCC------CEEECCCChhhCE
Confidence            4556789999999999543  24567899999  88776311        11223223222      6999999999999


Q ss_pred             EEEEEEEcCCCceE--EEEEEEEeccccCCCCCccccCCCeeeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcce
Q psy7036          83 LYKVKAKNKMGEVA--ASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHK  160 (254)
Q Consensus        83 ~Y~C~~~~~~~~~~--~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~  160 (254)
                      .|+|.+.|..|...  ..+.|.|.+..   ..|.+       .. .+..+.|.|.+.+.|.+.+.|++++..+ ..    
T Consensus        80 ~Y~c~~~n~~g~~~~~~~~~L~V~~~~---~~P~i-------~~-~~~~v~L~C~~~~~p~~~~~W~~~g~~l-~~----  143 (182)
T 1hnf_A           80 IYKVSIYDTKGKNVLEKIFDLKIQERV---SKPKI-------SW-TCINTTLTCEVMNGTDPELNLYQDGKHL-KL----  143 (182)
T ss_dssp             EEEEEEEETTSCEEEEEEEEEEEECCC---CCCEE-------EE-ETTTTEEEEECSSCSSCEEEEEESSCEE-EE----
T ss_pred             EEEEEEEeCCCceeEEEEEEEEEcCcC---CCCEE-------EE-ccCcEEEEeEccCCCCCEEEEEECCEEC-CC----
Confidence            99999999887653  45667775310   12221       11 2336899999998889999999999877 11    


Q ss_pred             EEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcceEEEEE
Q psy7036         161 FSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISL  204 (254)
Q Consensus       161 ~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~  204 (254)
                          ...     .+.+.. ..+|.|.|+|.|.|+.+.......+
T Consensus       144 ----~~~-----~i~~~~-~~~d~G~Y~C~a~N~~~~~~s~~~~  177 (182)
T 1hnf_A          144 ----SQR-----VITHKW-TTSLSAKFKCTAGNKVSKESSVEPV  177 (182)
T ss_dssp             ----ESS-----CEEEEC-CSCEEEEEEEEEECSSCEEEEEEEE
T ss_pred             ----CCc-----EEEEec-ccCCCcEEEEEEEeCCCCcEEccee
Confidence                011     243333 4689999999999999987766554

>3m8o_H Immunoglobulin A1 heavy chain; immunoglobulin fold, immune system; 1.55A {Homo sapiens} PDB: 3qnx_B 3qny_B

Probab=99.87  E-value=9.7e-21  Score=135.41  Aligned_cols=179  Identities=13%  Similarity=0.182  Sum_probs=113.2

Q ss_pred             eCCCceeecCCCeEEEEEEEeeCC--CCceEEEeCC--EE---e-e--e-------------CCcceEEEeecCCcceEE
Q psy7036          13 QKPQLRQEDEGNRLIFECQLLCNP--KPDIVWFRGE--TQ---L-S--E-------------DTRTVMKTTPIGTNKYLV   69 (254)
Q Consensus        13 ~~~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~~--~~---~-~--~-------------~~~~~~~~~~~~~~~~~~   69 (254)
                      ..|....+.+|++|+|.|.+.+.+  .+.+.|||..  ..   + .  .             ..++.+...  . ....+
T Consensus         5 ~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~--~-~~~~~   81 (221)
T 3m8o_H            5 VESGGGLVQPGGSLKLSCAASGFTLSGSNVHWVRQASGKGLEWVGRIKRNAESDATAYAASMRGRLTISRD--D-SKNTA   81 (221)
T ss_dssp             EEESCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECCGGGTTCEEECGGGTTSEEEEEE--G-GGTEE
T ss_pred             EccCCEEEcCCCCEEEEEEcccccccccEEEEEEECCCCCcEEEEEEcccccCcccccCccccccEEEEec--C-CCCEE
Confidence            345567899999999999998643  5789999732  11   1 0  0             122222211  1 12345


Q ss_pred             EEEEeccCCCCCeEEEEEEEcCC--CceEEEEEEEEeccccCCCCCccc-cCCCeeeecCCCeEEEEEEEee-CCC--Ce
Q psy7036          70 ALELDDVIETDAGLYKVKAKNKM--GEVAASINLNFSREQIDGLAPTFL-KKPSIRQEDDGKRLLFECRIQA-DPA--PT  143 (254)
Q Consensus        70 ~l~i~~~~~~d~G~Y~C~~~~~~--~~~~~~~~l~v~~~~~~~~~~~~~-~~~~~~~~~~g~~~~l~C~~~~-~~~--~~  143 (254)
                      +|.|.+++.+|+|.|.|.+.+..  ........|.|...  ...+|.+. ..+...  ..|+.++|.|.+.+ .|.  +.
T Consensus        82 sL~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~l~V~~~--~~~~p~v~~~~~~~~--~~g~~v~L~C~~~~~~P~~~~~  157 (221)
T 3m8o_H           82 FLQMNSLKSDDTAMYYCVIRGDVYNRQWGQGTLVTVSSA--SPTSPKVFPLSLCST--QPDGNVVIACLVQGFFPQEPLS  157 (221)
T ss_dssp             EEEECSCCGGGCEEEEEEEESCTTCCCBBCCEEEEECSC--CCBCCEEEEEECCSC--CCTTEEEEEEEEEEEBSSCSEE
T ss_pred             EEEECCCCHHHCEEEEEEEECCChhheECCCEEEEEecC--CCCCCeEEEecCccc--ccCCCEEEEEEEEeeECCCCEE
Confidence            79999999999999999998764  12233445666421  11233332 122212  57999999999988 665  38


Q ss_pred             EEEEECCEecccCCcceEEEcCCC-CceeeEEEEccCCCCCceeEEEEEEcCCCcc
Q psy7036         144 VIWSHSGVQVKEDKRHKFSIDKDG-HSYFASLEIIDVTIEDAGKYKVTAKNELGES  198 (254)
Q Consensus       144 ~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~  198 (254)
                      +.|++++..+............++ +...+.|.|.....+|.|.|+|.|.|..+..
T Consensus       158 v~W~~~g~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~ytC~v~~~~~~~  213 (221)
T 3m8o_H          158 VTWSESGQGVTARNFPPSQDASGDLYTTSSQLTLPATQCLAGKSVTCHVKHYTNPS  213 (221)
T ss_dssp             EEESCCSTTCEEEECCCEECSSSSCEEEEEEEEEEGGGSCTTCEEEEEEEETTSCC
T ss_pred             EEEEECCEECceEEcCceeeCCCCcEEEEEEEEECHHHcCCCCeEEEEEEECCCCc
Confidence            999998876632211111101222 2334579999999999999999999987543

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens}

Probab=99.87  E-value=3.9e-21  Score=136.91  Aligned_cols=185  Identities=21%  Similarity=0.290  Sum_probs=125.8

Q ss_pred             CCCeeEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEE
Q psy7036           7 FAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKV   86 (254)
Q Consensus         7 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C   86 (254)
                      .+|.| ..|....+.+|+.+.|.|.+.|.|.+.+.|+|+|..+......++......   ....|.|.+++..|+|.|+|
T Consensus        18 ~~P~~-~~p~~~~~~~G~~v~l~C~~~g~p~p~i~W~~~g~~l~~~~~~~~~~~~~~---~~~~L~i~~~~~~d~G~Y~C   93 (215)
T 3mtr_A           18 YAPKL-QGPVAVYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNIKIYNTP---SASYLEVTPDSENDFGNYNC   93 (215)
T ss_dssp             EEEEE-ECCSEEEECTTCCEEEEEEEEEESCCEEEEEETTEESSCSSSCSEEEEEET---TEEEEEECCCSGGGCEEEEE
T ss_pred             cCCcc-cCCceEEEECCCCEEEEEEEeecCCCEEEEEECCeECCCCCCccEEEecCC---CeeEEEEecCChhhCeEEEE
Confidence            46777 577778899999999999999999999999999999876543333322211   13489999999999999999


Q ss_pred             EEEcCCCceEEEEEEEEeccccCCCCCccccCCCeeeecCCCeEEEEEEEee----CCCC--eEEEEECCEecccCCcce
Q psy7036          87 KAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQA----DPAP--TVIWSHSGVQVKEDKRHK  160 (254)
Q Consensus        87 ~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~----~~~~--~~~W~~~~~~~~~~~~~~  160 (254)
                      .+.|..|.....+.|.|...+   .+|..     ......+..+.+.|....    .|..  .+.|.+++.......  .
T Consensus        94 ~a~n~~g~~~~~~~l~v~~~P---~~p~~-----~~~~~~~~~~~l~w~~p~~~~~~pi~~y~v~~~~~~~~~w~~~--~  163 (215)
T 3mtr_A           94 TAVNRIGQESLEFILVQADTP---SSPSI-----DQVEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSK--W  163 (215)
T ss_dssp             EEECSSCEEEEEEEEEECCCC---CCCEE-----EEEEEETTEEEEEEECCSCCCSSCEEEEEEEEEETTCCCCEEE--E
T ss_pred             EEEECCCceEEEEEEEECCCC---CCCcc-----eEEEEecceEEEEEecCCccCCCceEEEEEEEEECCCCccccc--c
Confidence            999999998888888886321   11111     111234567888887322    2222  367877664321100  0


Q ss_pred             EEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcceEEEEEEEe
Q psy7036         161 FSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFD  207 (254)
Q Consensus       161 ~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~v~  207 (254)
                      .......  ....+.|.++...+.|.|+|.|.|..|....+..+.+.
T Consensus       164 ~~~~~~~--~~~~l~i~~L~~~~~y~~~~~A~N~~G~s~~S~~~~v~  208 (215)
T 3mtr_A          164 YDAKEAS--MEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFK  208 (215)
T ss_dssp             EEHHHHH--HHTEEEEECCCTTCEEEEEEEEEESSCBCCCCCCEEEE
T ss_pred             ccccccc--ccccEEECCCCCCCEEEEEEEEEeCCcccCcccceeeE
Confidence            0000000  00279999999999999999999999977655555554

>1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}

Probab=99.86  E-value=8.5e-20  Score=146.07  Aligned_cols=222  Identities=11%  Similarity=0.138  Sum_probs=131.8

Q ss_pred             CCCeEEEEEEEeeC-CCC-ceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcCCCceEEEE
Q psy7036          22 EGNRLIFECQLLCN-PKP-DIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASI   99 (254)
Q Consensus        22 ~g~~v~l~C~~~~~-~~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~   99 (254)
                      .|+.++|.|.+.+. |.+ .++|++++...... ........++.....+.|.|.+.... .|.|+|.+.|..+......
T Consensus       149 ~~~~v~L~C~~~g~~P~p~~v~W~~~~~~~~~~-~~~~~~~~~g~~~~~s~L~i~~~~~~-~g~ytC~v~n~~~~~~~~~  226 (512)
T 1zvo_C          149 DNSPVVLACLITGYHPTSVTVTWYMGTQSQPQR-TFPEIQRRDSYYMTSSQLSTPLQQWR-QGEYKCVVQHTASKSKKEI  226 (512)
T ss_pred             CCCeEEEEEEEEeeecCceEEEEEcCcccCceE-ecCceecCCCCEEEEEEEEEcHHHcC-CceEEEEEEeCCCCceEEE
Confidence            46899999999885 654 89999965432100 00001111222233456889888777 9999999999887644433


Q ss_pred             -----------EEEEecccc----------------------------------------------CCCCCcc-ccCCCe
Q psy7036         100 -----------NLNFSREQI----------------------------------------------DGLAPTF-LKKPSI  121 (254)
Q Consensus       100 -----------~l~v~~~~~----------------------------------------------~~~~~~~-~~~~~~  121 (254)
                                 .+.+...+.                                              ...+|.+ ...+..
T Consensus       227 ~~~~~~~~~~~~v~l~~pp~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~p~v~~~~p~~  306 (512)
T 1zvo_C          227 FRWPESPKAQASSVPTAQPQAEGSLAKATTAPATTRNTGRGGEEKKKEKEKEEQEERETKTPECPSHTQPLGVYLLTPAV  306 (512)
T ss_pred             ecCCCCCCcCCEEEEeCCCchhccccccccCchhhccCcccccceeccCCcccccccCcccccCCCCCCCCEEEEECCCh
Confidence                       223321000                                              0012222 122222


Q ss_pred             eeecCCCeEEEEEEEeeCCC--CeEEEEECCEecccCCc-ceEEEcCCC-CceeeEEEEccCCCCCceeEEEEEEcCCCc
Q psy7036         122 RQEDDGKRLLFECRIQADPA--PTVIWSHSGVQVKEDKR-HKFSIDKDG-HSYFASLEIIDVTIEDAGKYKVTAKNELGE  197 (254)
Q Consensus       122 ~~~~~g~~~~l~C~~~~~~~--~~~~W~~~~~~~~~~~~-~~~~~~~~~-~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~  197 (254)
                      ..+..|+.+.|.|.+.++++  ..+.|++++..+..... .......++ +...+.|.|.....+|.|.|+|.|.|..+.
T Consensus       307 ~~~~~g~~~~L~C~v~g~~P~~~~i~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~d~g~y~C~a~n~~~~  386 (512)
T 1zvo_C          307 QDLWLRDKATFTCFVVGSDLKDAHLTWEVAGKVPTGGVEEGLLERHSNGSQSQHSRLTLPRSLWNAGTSVTCTLNHPSLP  386 (512)
T ss_pred             HHhccCCceEEEEEEeceECCCeEEEEEECCEeccCceeccceecCCCCeEEEEEEEEEchHHhcCCCeEEEEEEeCCCC
Confidence            33557999999999988644  38999999988652111 112222233 244568999999999999999999998775


Q ss_pred             ceEEEEEEEecCCCCCCCCCCCCeeecCCccccccCCCCcEE-EEEEEeccCCC--ceeC
Q psy7036         198 SNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIV-IECRLVGEPEP--TISW  254 (254)
Q Consensus       198 ~~~~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~-l~C~~~~~p~p--~~~W  254 (254)
                      .. ...+.......    ...+|.+...+...   .|+ .+. |.|.+.|++++  .+.|
T Consensus       387 ~~-~~~~~~~~~~~----~~~~p~v~~~~~~~---~~~-~~~~L~C~~~g~~P~~i~v~W  437 (512)
T 1zvo_C          387 PQ-RLMALREPAAQ----APVKLSLNLLASSD---PPE-AASWLLCEVSGFSPPNILLMW  437 (512)
T ss_pred             CC-ceeEEeecCCC----CCCCCEEEEEccCc---CCC-CceEEEEEEeeeCCCCcEEEE
Confidence            53 32232211000    01245444333222   577 899 99999996443  4778

>1x9q_A SCFV, 4M5.3 anti-fluorescein single chain antibody fragment; VERY high affinity, antibody binding, electrostatics, directed evolution; HET: FLU; 1.50A {Homo sapiens}

Probab=99.86  E-value=5.6e-21  Score=140.61  Aligned_cols=183  Identities=16%  Similarity=0.203  Sum_probs=113.4

Q ss_pred             CCCeeEeCCCceeecCCCeEEEEEEEeeCC-----CCceEEEeCC--E---Eeee---------CCcceEEEeecCCcce
Q psy7036           7 FAPSFTQKPQLRQEDEGNRLIFECQLLCNP-----KPDIVWFRGE--T---QLSE---------DTRTVMKTTPIGTNKY   67 (254)
Q Consensus         7 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~-----~~~v~W~~~~--~---~~~~---------~~~~~~~~~~~~~~~~   67 (254)
                      ..+.+.+.|....+.+|++++|.|.+.+.+     .+.+.|||++  .   .+..         ..++.+.  ..   ..
T Consensus        14 ~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~--~~---~~   88 (268)
T 1x9q_A           14 SDVVMTQTPLSLPVSLGDQASISCRSSQSLVHSNGNTYLRWYLQKPGQSPKVLIYKVSNRVSGVPDRFSGS--GS---GT   88 (268)
T ss_dssp             CCCCEEEECSEECCCTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEE--EE---TT
T ss_pred             ccceEEeeCCeEEecCCCCEEEEeEecCCcccccCCceEEEEEECCCCCCEEEEEecCCCCCCCcccEEEE--cC---CC
Confidence            356677888888999999999999998766     4789999853  1   1111         1222222  11   12


Q ss_pred             EEEEEEeccCCCCCeEEEEEEEcCCCc-eEEEEEEEEeccccCC---CCCc--------------cccCCCeeeecCCCe
Q psy7036          68 LVALELDDVIETDAGLYKVKAKNKMGE-VAASINLNFSREQIDG---LAPT--------------FLKKPSIRQEDDGKR  129 (254)
Q Consensus        68 ~~~l~i~~~~~~d~G~Y~C~~~~~~~~-~~~~~~l~v~~~~~~~---~~~~--------------~~~~~~~~~~~~g~~  129 (254)
                      ...|.|.+++.+|+|.|.|.+.+..+. ......|.|.......   .+|.              ....+....+.+|+.
T Consensus        89 ~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~~p~~pp~~~~~~~~~~~~~~v~~~~~~~~~v~~G~~  168 (268)
T 1x9q_A           89 DFTLKINRVEAEDLGVYFCSQSTHVPWTFGGGTKLEIKSSADDAKKDAAKKDDAKKDDAKKDGGVKLDETGGGLVQPGGA  168 (268)
T ss_dssp             EEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEC------------------------CGGGCEEEEECCEEECTTCC
T ss_pred             EEEEEECCCChhHCEEEEEEEecCCCceEcCCEEEEEccCccCCCccccccccccccccccccceEEECCCceEecCCCc
Confidence            347999999999999999999987543 2223455654321100   1110              112223457889999


Q ss_pred             EEEEEEEeeCCC--CeEEEEECC--Eecc-----------------cCCcceEEEcCCCCceeeEEEEccCCCCCceeEE
Q psy7036         130 LLFECRIQADPA--PTVIWSHSG--VQVK-----------------EDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYK  188 (254)
Q Consensus       130 ~~l~C~~~~~~~--~~~~W~~~~--~~~~-----------------~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~  188 (254)
                      ++|.|.+.+.+.  +.+.|+++.  ..+.                 .....++....+.......|.|.+++.+|+|.|.
T Consensus       169 v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~  248 (268)
T 1x9q_A          169 MKLSCVTSGFTFGHYWMNWVRQSPEKGLEWVAQFRNKPYNYETYYSDSVKGRFTISRDDSKSSVYLQMNNLRVEDTGIYY  248 (268)
T ss_dssp             EEEEEEEESSCGGGCEEEEEEEETTTEEEEEEEECCGGGTTCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGGCEEEE
T ss_pred             EEEEEEecCccccccEEEEEEeCCCCCcEEEEEEcccccccccccCCccCCeEEEEEeCCCCEEEEEECCCCHHHCEEEE
Confidence            999999988763  789999852  2110                 0011122221111111247999999999999999


Q ss_pred             EEEEcC
Q psy7036         189 VTAKNE  194 (254)
Q Consensus       189 C~~~~~  194 (254)
                      |.+.+.
T Consensus       249 C~a~~~  254 (268)
T 1x9q_A          249 CTGASY  254 (268)
T ss_dssp             EEEEET
T ss_pred             EEEccC
Confidence            999874

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus}

Probab=99.86  E-value=8.5e-21  Score=131.09  Aligned_cols=157  Identities=10%  Similarity=0.096  Sum_probs=105.6

Q ss_pred             CCceeecCCCeEEEEEEEee-CCCCceEEEeC-CEEeee-C---------Cc--ceEEEeecCCcceEEEEEEeccCCCC
Q psy7036          15 PQLRQEDEGNRLIFECQLLC-NPKPDIVWFRG-ETQLSE-D---------TR--TVMKTTPIGTNKYLVALELDDVIETD   80 (254)
Q Consensus        15 ~~~~~v~~g~~v~l~C~~~~-~~~~~v~W~~~-~~~~~~-~---------~~--~~~~~~~~~~~~~~~~l~i~~~~~~d   80 (254)
                      ...+.+.+|++|+|.|.+.+ .+.+.+.|+|+ +..+.. .         ..  .++....     ...+|.|.+++..|
T Consensus         6 ~~~v~v~~G~~vtL~c~~~~~~~~~~i~W~k~~~~~i~~~~~~~~~~~~~~~~~~R~~l~~-----~~~sL~I~~v~~~D   80 (180)
T 2dru_A            6 VPNVNAITGSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDLDK-----TNGALRIYNVSKED   80 (180)
T ss_dssp             CCEEEEETTSCEEECCCSSCCCSCSEEEEESSSSCEEEEECSSSCEEECSSTTTTTEEECT-----TTCCEEECSCCGGG
T ss_pred             cceEEEEeCCCEEEeCCCCCCCceeEEEEEecCCeEEEEEECCCCeeEcchhcCCeEEEeC-----CCccEEEcCCCHHH
Confidence            34568899999999999854 34678999994 333211 0         11  1222211     11279999999999


Q ss_pred             CeEEEEEEEcCCCceEEEEEEEEeccccCCCCCccccCCCeeeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcce
Q psy7036          81 AGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHK  160 (254)
Q Consensus        81 ~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~  160 (254)
                      +|.|+|.+.+.. .....+.|.|....   ..|.+       .. .+..+.|.|.+...|.+.+.|++++..+..     
T Consensus        81 ~G~Y~C~v~~~~-~~~~~~~L~V~~~~---~~P~i-------~~-~~~~v~L~C~~~~gp~p~i~W~~~~~~l~~-----  143 (180)
T 2dru_A           81 RGDYYMRMLHET-EDQWKITMEVYEMV---SKPMI-------YW-ECSNATLTCEVLEGTDVELKLYQGKEHLRS-----  143 (180)
T ss_dssp             CEEEEEEEESSS-EEEEEEEEEEECCC---CCCEE-------EE-EGGGTEEEEECSSCTTCEEEEEETTEEEEE-----
T ss_pred             CeEEEEEEEcCC-eEEEEEEEEEECCC---CCCEE-------Ee-cCCCEEEEEEeCCCCCCEEEEEECCeECcC-----
Confidence            999999998766 55667778876310   11211       11 345699999993338899999999987741     


Q ss_pred             EEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcceEEEE
Q psy7036         161 FSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATIS  203 (254)
Q Consensus       161 ~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~  203 (254)
                         ..+.     +|.+..  .+|.|.|+|.|.|..+.......
T Consensus       144 ---~~~~-----~l~~~~--~~d~g~Y~C~a~N~~~~~~~~~~  176 (180)
T 2dru_A          144 ---LRQK-----TMSYQW--TNLRAPFKCKAVNRVSQESEMEV  176 (180)
T ss_dssp             ---ESSS-----EEEEEC--SCCSSCEEEEEEETTEEEEEEEC
T ss_pred             ---CCCC-----EEEEEE--hhcCccEEEEEecCcCcccccee
Confidence               1111     566533  78999999999999887665543

>1c5d_H Monoclonal antibody against the main immunogenic the human muscle acetylcholine receptor...; immunoglobulin, immune system; 2.40A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 2arj_H 3b9k_H* 2gk0_H 2gjz_H 1fn4_B 3mj8_H 3mj9_H*

Probab=99.86  E-value=8.3e-21  Score=135.17  Aligned_cols=182  Identities=12%  Similarity=0.183  Sum_probs=110.5

Q ss_pred             CCceeecCCCeEEEEEEEeeCC--CCceEEEeCC--EE---e-ee----------CCcceEEEeecCCcceEEEEEEecc
Q psy7036          15 PQLRQEDEGNRLIFECQLLCNP--KPDIVWFRGE--TQ---L-SE----------DTRTVMKTTPIGTNKYLVALELDDV   76 (254)
Q Consensus        15 ~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~~--~~---~-~~----------~~~~~~~~~~~~~~~~~~~l~i~~~   76 (254)
                      |....+.+|++++|.|.+.+.+  .+.+.|||++  ..   + ..          ....++....+. ....++|.|.++
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~-~~~~~~L~I~~v   85 (215)
T 1c5d_H            7 SGPGLVQPSQTLSLTCTVSGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDT-SKSQVFLKMNSL   85 (215)
T ss_dssp             ECCCEECTTCCEEEEEEECSSCTTSCCEEEEEECTTSCCEEEEEECTTCCEECCTTTGGGEEEEEET-TTTEEEEEESSC
T ss_pred             CCCeeecCCCcEEEEEEECCCcCCCCeEEEEEECCCCCcEEEEEEcCCCCcEECCcccCcEEEEeeC-CCceEEEEECCC
Confidence            5667899999999999998754  5789999852  11   1 10          011222222111 123458999999


Q ss_pred             CCCCCeEEEEEEEcCCCc---eEEEEEEEEeccccCCCCCccccCCCeeeecCCCeEEEEEEEeeC-CCC-eEEEEECCE
Q psy7036          77 IETDAGLYKVKAKNKMGE---VAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQAD-PAP-TVIWSHSGV  151 (254)
Q Consensus        77 ~~~d~G~Y~C~~~~~~~~---~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~-~~~W~~~~~  151 (254)
                      +.+|+|.|.|.+.+..+.   ......|.|...  ...+|.+........+..|+.+.|.|.+.+. |.+ .+.|++++.
T Consensus        86 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~L~V~~~--~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~  163 (215)
T 1c5d_H           86 QTEDTAIYFCTREDGWNYFDYWGPGTMVTVSSA--QTTAPSVYPLAPGCGDTTSSTVTLGCLVKGYFPEPVTVTWNSGAL  163 (215)
T ss_dssp             CGGGCEEEEEEECCSSSCSCCBCCCEEEEECSS--CCBCCCEEEECCCSSCCCCSSEEEEEEEEEEBSSCCEEEEGGGTT
T ss_pred             CcccCEEEEEEEecCCcccceEcCCEEEEecCC--CCCCCeEEeccCChhhccCCcEEEEEEEeeeEcCCcEEEEccCCc
Confidence            999999999999876421   122356777521  1123333322212234679999999999886 777 999999886


Q ss_pred             ecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcceEEEE
Q psy7036         152 QVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATIS  203 (254)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~  203 (254)
                      .+..... ......+.+...+.|.  ....+| |.|+|.|.|..+.......
T Consensus       164 ~~~~~~~-~~~~~~g~~~~~s~L~--~~~~~~-g~ytC~v~n~~~~~~~~~~  211 (215)
T 1c5d_H          164 SSDVHTF-PAVLQSGLYTLTSSVT--SSTWPS-QTVTCNVAHPASSTKVDKK  211 (215)
T ss_dssp             CCSCCBC-CCEEETTEEEEEEEEE--ESSTTT-SCCEEEEEEGGGTEEEEEE
T ss_pred             cCceEec-CcccCCCCEEEEEEEe--cccCCC-CeEEEEEEeCCCCccEEEe
Confidence            5432111 1111121111222344  444456 9999999998887655443

>2gki_A Nuclease; anti-DNA antibody, catalytic antibody, immune system; 2.88A {Mus musculus}

Probab=99.86  E-value=2e-20  Score=139.17  Aligned_cols=178  Identities=13%  Similarity=0.169  Sum_probs=112.7

Q ss_pred             eCCCceeecCCCeEEEEEEEeeCC--CCceEEEeCC--E---Eee--------------eCCcceEEEeecCCcceEEEE
Q psy7036          13 QKPQLRQEDEGNRLIFECQLLCNP--KPDIVWFRGE--T---QLS--------------EDTRTVMKTTPIGTNKYLVAL   71 (254)
Q Consensus        13 ~~~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~~--~---~~~--------------~~~~~~~~~~~~~~~~~~~~l   71 (254)
                      ..|....+.+|++++|.|.+.+.+  .+.+.|||++  .   .+.              ...++.+....   .....+|
T Consensus        27 ~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~---~~~~~sL  103 (291)
T 2gki_A           27 QQSGPELVKPGASVKMSCKASGYTFTSYVMHWVKQKPGQGLEWIGYINPYNDGTKYNEKFKGKATLTSDK---SSSTAYM  103 (291)
T ss_dssp             EECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECGGGBTTBCEEEEG---GGTEEEE
T ss_pred             EcCCcEEecCCCCEEEEEeccCCcccccEEEEEEECCCCCcEEEEEEecCCCccccCcccCCCEEEEEeC---CCCEEEE
Confidence            345678899999999999998765  5789999853  1   111              01222222111   1123489


Q ss_pred             EEeccCCCCCeEEEEEEEcCC-Cc----eEEEEEEEEecc----------ccCCCCCccccCCCeeeecCCCeEEEEEEE
Q psy7036          72 ELDDVIETDAGLYKVKAKNKM-GE----VAASINLNFSRE----------QIDGLAPTFLKKPSIRQEDDGKRLLFECRI  136 (254)
Q Consensus        72 ~i~~~~~~d~G~Y~C~~~~~~-~~----~~~~~~l~v~~~----------~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~  136 (254)
                      .|.+++.+|+|.|.|.+.+.. +.    ......|.|...          .....++.+...+....+.+|+.++|.|.+
T Consensus       104 ~I~~v~~~DsG~Y~C~~~~~~~g~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~  183 (291)
T 2gki_A          104 ELSSLTSEDSAVYYCARGAYKRGYAMDYWGQGTSVTVSSRGGGGSGGGGSGGGGSDLVMSQSPSSLAVSAGEKVTMSCKS  183 (291)
T ss_dssp             EECSCCGGGCEEEEEEEECGGGTTCEEEECCCEEEEECC----------------CCCEECSCSEEEEETTSCEEEEEEE
T ss_pred             EECcCCHHHCEEEEEEEeccccccccceeCCCcEEEEecCCccccccccCCCCCccceEEcCCCEEEEcCCCcEEEEEEc
Confidence            999999999999999999864 21    112346666530          000012333344556678899999999999


Q ss_pred             eeCCCC------eEEEEECC--Eec---ccC-------CcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCC
Q psy7036         137 QADPAP------TVIWSHSG--VQV---KED-------KRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNEL  195 (254)
Q Consensus       137 ~~~~~~------~~~W~~~~--~~~---~~~-------~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~  195 (254)
                      .+.+.+      .+.|+|+.  ...   ...       ...++....++  ....|.|.+++.+|+|.|.|.+.|..
T Consensus       184 ~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~--~~~~L~I~~v~~~DsG~Y~C~a~~~~  258 (291)
T 2gki_A          184 SQSLFNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGSG--TDFTLTISSVQAEDLAVYYCKQSYYH  258 (291)
T ss_dssp             SSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEET--TEEEEEESSCCGGGCEEEEEEEEETT
T ss_pred             CCccccccccceeEEEEEECCCCCcEEEEEEcccCCCCcCCCEEEEecC--CEEEEEECCCCHHHCEEEEEEEccCC
Confidence            888765      89999963  211   100       01112111111  12379999999999999999999854

>2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II, MEM receptor, molecular mimicry, multiple sclerosis, immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo sapiens}

Probab=99.86  E-value=5e-21  Score=141.67  Aligned_cols=190  Identities=15%  Similarity=0.212  Sum_probs=120.1

Q ss_pred             CCeeEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeCC--E---Eee---e---------CCcceEEEeecCCcceEEE
Q psy7036           8 APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGE--T---QLS---E---------DTRTVMKTTPIGTNKYLVA   70 (254)
Q Consensus         8 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~--~---~~~---~---------~~~~~~~~~~~~~~~~~~~   70 (254)
                      .+.+.+.|..+.+.+|++++|.|.+.+.+.+.+.|||++  .   .+.   .         ....++....+  ....++
T Consensus        24 ~~~v~~~p~~v~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~--~~~~~s  101 (279)
T 2wbj_D           24 GAVVSQHPSWVISKSGTSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHA--SLTLST  101 (279)
T ss_dssp             CCCEEEECSEEEEETTSCEEEEEEESSSCEEEEEEEEECSSSCCEEEEEEESSSCCCCCSSSCSSSEEEEEC--SSSEEE
T ss_pred             cceEEeCCCeEEecCCCeEEEEEEeCCCCCCeEEEEEeCCCCCeEEEEEEecCCcceecCCccCCcEEEEeC--CCCEEE
Confidence            567788888899999999999999987788899999863  1   110   0         00112222211  123458


Q ss_pred             EEEeccCCCCCeEEEEEEEcCCC----c--eEEEEEEEEeccccCCCCCccccC-CCeeeecCCCeEEEEEEEeeC-CC-
Q psy7036          71 LELDDVIETDAGLYKVKAKNKMG----E--VAASINLNFSREQIDGLAPTFLKK-PSIRQEDDGKRLLFECRIQAD-PA-  141 (254)
Q Consensus        71 l~i~~~~~~d~G~Y~C~~~~~~~----~--~~~~~~l~v~~~~~~~~~~~~~~~-~~~~~~~~g~~~~l~C~~~~~-~~-  141 (254)
                      |.|.+++.+|+|.|+|.+.+..+    .  ......|.|........+|.+... +....+..|+.+.|.|.+.+. |. 
T Consensus       102 L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~P~~  181 (279)
T 2wbj_D          102 LTVTSAHPEDSSFYICSARDLTSGANNEQFFGPGTRLTVTEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDH  181 (279)
T ss_dssp             EEESSCCGGGCEEEEEEEEETTCBTSCCEEECCCEEEEEESCGGGCBCCEEEEEECCHHHHHHHSCCEEEEEEEEEBSSC
T ss_pred             EEEccCCccCCEEEEEEEcccccCCccceeeCCCEEEEEecCCCCCCCCEEEEECCCcccccCCCceEEEEEEeeEcCCC
Confidence            99999999999999999998421    1  122345666532111123433221 222223468899999999986 43 


Q ss_pred             CeEEEEECCEecccCCcce--EEE----cCCC-CceeeEEEEccCCCCC-ceeEEEEEEcCCCcce
Q psy7036         142 PTVIWSHSGVQVKEDKRHK--FSI----DKDG-HSYFASLEIIDVTIED-AGKYKVTAKNELGESN  199 (254)
Q Consensus       142 ~~~~W~~~~~~~~~~~~~~--~~~----~~~~-~~~~~~l~i~~~~~~d-~G~y~C~~~~~~~~~~  199 (254)
                      +.+.|++++..+.......  ...    ..++ +...+.|.|......| .|.|+|.|.|......
T Consensus       182 ~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~~~~YtC~v~n~~~~~~  247 (279)
T 2wbj_D          182 VELSWWVNGKEVHSGVSTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYGLSEN  247 (279)
T ss_dssp             EEEEEEETTEECCTTEEECSSCEESSTTSTTCCEEEEEEEECCSTTTTCTTCEEEEEEEECCBCTT
T ss_pred             cEEEEEECCEECCCCcccccccccccccCCCCcEEEEEEEEEChHHhccCCCEEEEEEEeCCCCCC
Confidence            5899999998875432110  000    1222 2334568888777654 6789999999866544

>3fku_X Neutralizing antibody F10; influenza, hemagglutinin, SCFV, F membrane, envelope protein, fusion protein, membrane, trans virion; HET: NAG BMA; 3.20A {Homo sapiens}

Probab=99.85  E-value=3.3e-20  Score=137.31  Aligned_cols=180  Identities=16%  Similarity=0.241  Sum_probs=112.8

Q ss_pred             CeeEeCCCceeecCCCeEEEEEEEeeC--CCCceEEEeCC--EE---e-ee-------------CCcceEEEeecCCcce
Q psy7036           9 PSFTQKPQLRQEDEGNRLIFECQLLCN--PKPDIVWFRGE--TQ---L-SE-------------DTRTVMKTTPIGTNKY   67 (254)
Q Consensus         9 p~~~~~~~~~~v~~g~~v~l~C~~~~~--~~~~v~W~~~~--~~---~-~~-------------~~~~~~~~~~~~~~~~   67 (254)
                      +.+.+ |....+.+|++|+|.|.+.+.  +.+.+.|||..  ..   + ..             ..++.+...   ....
T Consensus         2 ~~v~q-p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~---~~~~   77 (280)
T 3fku_X            2 VQLVQ-SGAEVKKPGSSVKVSCTSSEVTFSSFAISWVRQAPGQGLEWLGGISPMFGTPNYAQKFQGRVTITAD---QSTR   77 (280)
T ss_dssp             CCEEC-CCCCEECTTCCEEEEEEECCSCCTTSCEEECCBCSSSCCCCCEEECTTTCCEEECGGGTTTCEEEEE---TTTT
T ss_pred             CeEEc-CCCEEECCCCcEEEEEEeeccCCCCeEEEEEEeCCCCCCEEEEEEeccCCccccCcccCCcEEEEEe---CCCC
Confidence            34555 778899999999999999764  56789999742  11   0 00             112222211   1222


Q ss_pred             EEEEEEeccCCCCCeEEEEEEEcC---------CCceEEEEEEEEecccc---------CCCCCccccCCCeeeecCCCe
Q psy7036          68 LVALELDDVIETDAGLYKVKAKNK---------MGEVAASINLNFSREQI---------DGLAPTFLKKPSIRQEDDGKR  129 (254)
Q Consensus        68 ~~~l~i~~~~~~d~G~Y~C~~~~~---------~~~~~~~~~l~v~~~~~---------~~~~~~~~~~~~~~~~~~g~~  129 (254)
                      ..+|.|.+++.+|+|.|.|.+.+.         .........|.|.....         ...++.+...+. ..+.+|+.
T Consensus        78 ~~sL~I~~v~~~DsG~Y~C~~~~~~~~~g~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~v~~~p~-~~v~~G~~  156 (280)
T 3fku_X           78 TAYMDLRSLRSEDTAVYYCARSPSYICSGGTCVFDHWGQGTLVTVSSGGGGSGGGGSGGGGIQPGLTQPPS-VSKGLRQT  156 (280)
T ss_dssp             EEEEEECSCCSTTCEECCEEECSSSSSSSTTCCCCEECCCCEEEECC--------------CCCSBBCCSE-EEECTTCC
T ss_pred             EEEEEECCCChhhCEEEEEEEecCCccccccccccEECCCEEEEEcCCCCccCCCCCCceEeeeEEEeCCc-EEEecCCC
Confidence            358999999999999999999886         11122344566643000         012333444444 78889999


Q ss_pred             EEEEEEEee-CC-CCeEEEEECC--Eeccc----------CCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCC
Q psy7036         130 LLFECRIQA-DP-APTVIWSHSG--VQVKE----------DKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNEL  195 (254)
Q Consensus       130 ~~l~C~~~~-~~-~~~~~W~~~~--~~~~~----------~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~  195 (254)
                      ++|.|.+.+ .+ .+.+.|+|..  ..+..          ....++....++.  ...|.|.+++.+|+|.|.|.+.+..
T Consensus       157 v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~--~~~L~I~~v~~~DsG~Y~C~~~~~~  234 (280)
T 3fku_X          157 ATLTCTGNSNNVGNQGAAWLQQHQGHPPKLLSYRNNDRPSGISERFSASRSGN--TASLTITGLQPEDEADYYCSTWDSS  234 (280)
T ss_dssp             EEEEEECCCCCCCTTCCEEEEECSSSCCEESCCTTCCCCSSSCTTEEEEEETT--EEEEEECSCCGGGCSEEEEEEEETT
T ss_pred             EEEEEEecCCCCCCceEEEEEECCCCCCEEEEEeccccCCCCCCCEEEEccCC--EEEEEECCCCHHHCEEEEEEEecCC
Confidence            999999887 33 3789999832  21110          0011122221111  2369999999999999999999876

>3knb_A Titin; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*

Probab=99.85  E-value=1.1e-20  Score=117.47  Aligned_cols=96  Identities=24%  Similarity=0.470  Sum_probs=82.0

Q ss_pred             CCCCeeEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEE
Q psy7036           6 DFAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYK   85 (254)
Q Consensus         6 ~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~   85 (254)
                      +.+|.|...|....+.+|+++.|.|.+.|.|.+.++|+|+|..+......++.....+   ..+.|.|.+++.+|+|.|+
T Consensus         3 ~~PP~i~~~p~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~g~~i~~~~~~~~~~~~~~---~~~~L~I~~~~~~D~G~Y~   79 (100)
T 3knb_A            3 GIPPKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTD---DLTTLIIMDVQKQDGGLYT   79 (100)
T ss_dssp             CEEEEECCCCSEEEEETTSEEEEEEEEEEESCCEEEEEETTEECCTTGGGTEEEEECS---SEEEEEESSCCGGGCEEEE
T ss_pred             CCCCEEEeCCCcEEEeCCCeEEEEEEEEEecCCEEEEEECceEeeeeccceeeeeccc---ceEEEEEcCCCccCCEEEE
Confidence            4579999999999999999999999999999999999999999976655444433332   2347999999999999999


Q ss_pred             EEEEcCCCceEEEEEEEEe
Q psy7036          86 VKAKNKMGEVAASINLNFS  104 (254)
Q Consensus        86 C~~~~~~~~~~~~~~l~v~  104 (254)
                      |.+.|..|.....+.|.|.
T Consensus        80 C~a~N~~G~~~~~~~l~V~   98 (100)
T 3knb_A           80 LSLGNEFGSDSATVNIHIR   98 (100)
T ss_dssp             EEEEETTEEEEEEEEEEEE
T ss_pred             EEEEECCCEEEEEEEEEEE
Confidence            9999999998888888885

>3knb_B Obscurin-like protein 1; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2wp3_O* 2wwm_C 2wwk_O

Probab=99.85  E-value=9.2e-21  Score=119.13  Aligned_cols=95  Identities=27%  Similarity=0.449  Sum_probs=82.5

Q ss_pred             CCCCCeeEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEE
Q psy7036           5 EDFAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLY   84 (254)
Q Consensus         5 ~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y   84 (254)
                      .+.+|.|+..|.+..+.+|+++.|.|.+.|.|.+.++|+|+|..+....++.+...     ...+.|.|.+++..|+|.|
T Consensus        10 ~~~pP~f~~~p~~~~v~~G~~~~l~C~~~G~P~p~v~W~k~g~~l~~~~~~~~~~~-----~~~~~L~I~~v~~~D~G~Y   84 (107)
T 3knb_B           10 QGSPPCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPAD-----GAEHGLLLTAALPTDAGVY   84 (107)
T ss_dssp             CCEEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEECCEE-----TTEEEEEESSCCGGGCEEE
T ss_pred             CCCCCEEEeCCCcEEEeCCCcEEEEEEEEEecCCEEEEEECcccccceeeEEEeec-----CceEEEEEecCChhhCEEE
Confidence            34589999999999999999999999999999999999999999987766554322     1234799999999999999


Q ss_pred             EEEEEcCCCceEEEEEEEEe
Q psy7036          85 KVKAKNKMGEVAASINLNFS  104 (254)
Q Consensus        85 ~C~~~~~~~~~~~~~~l~v~  104 (254)
                      +|.+.|..|.....+.|.|.
T Consensus        85 ~C~a~N~~G~~~~~~~l~V~  104 (107)
T 3knb_B           85 VCRARNAAGEAYAAAAVTVL  104 (107)
T ss_dssp             EEEEEETTEEEEEEEEEEEE
T ss_pred             EEEEEECCCEEEEEEEEEEE
Confidence            99999999998888888886

>3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A {Mus musculus}

Probab=99.85  E-value=7.8e-21  Score=140.04  Aligned_cols=190  Identities=13%  Similarity=0.193  Sum_probs=118.3

Q ss_pred             CCeeEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeC--CEE---e-eeCCc---------c-eEEEeecCCcceEEEE
Q psy7036           8 APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRG--ETQ---L-SEDTR---------T-VMKTTPIGTNKYLVAL   71 (254)
Q Consensus         8 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~--~~~---~-~~~~~---------~-~~~~~~~~~~~~~~~l   71 (254)
                      ...+...|..+.+.+|++++|.|.+.+ +.+.+.|||.  +..   + .....         . ++....  ......+|
T Consensus        27 ~~~v~~~p~~v~v~~G~~v~L~C~~~~-~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~sL  103 (270)
T 3qib_D           27 GMKVIQTPRYLVKGQGQKAKMRCIPEK-GHPVVFWYQQNKNNEFKFLINFQNQEVLQQIDMTEKRFSAEC--PSNSPCSL  103 (270)
T ss_dssp             -CCCEEECSEEEEETTSCEEEEEECCT-TCCEEEEEEECTTCCEEEEEEEETTEEEEECHHHHHHEEEEC--CTTSCEEE
T ss_pred             ceeEEeCCCeEEEcCCCCEEEEEEecC-CCceEEEEEECCCCCcEEEEEECCCCceecCCccCCcEEEEe--CCCcEEEE
Confidence            456777888889999999999999864 6788999982  211   1 00000         0 122111  12334589


Q ss_pred             EEeccCCCCCeEEEEEEEcCCC----ceEEEEEEEEeccccCCCCCcccc-CCCeeeecCCCeEEEEEEEee-CCCC-eE
Q psy7036          72 ELDDVIETDAGLYKVKAKNKMG----EVAASINLNFSREQIDGLAPTFLK-KPSIRQEDDGKRLLFECRIQA-DPAP-TV  144 (254)
Q Consensus        72 ~i~~~~~~d~G~Y~C~~~~~~~----~~~~~~~l~v~~~~~~~~~~~~~~-~~~~~~~~~g~~~~l~C~~~~-~~~~-~~  144 (254)
                      .|.+++.+|+|.|.|.+.+...    .......|.|........+|.+.. .+....+..|+.++|.|.+.+ .|.+ .+
T Consensus       104 ~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v  183 (270)
T 3qib_D          104 EIQSSEAGDSALYLCASSLNWSQDTQYFGPGTRLLVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVEL  183 (270)
T ss_dssp             EESSCCGGGCEEEEEEEESCTTCCCCEECCCEEEEEESCSTTCBCCEEEEEECCHHHHHHHSEEEEEEEEEEEBSSCEEE
T ss_pred             EECCCCHhHCeEEEEEEecCCCccceEECCcEEEEEccccccccCCceEEECCCccccccCCceEEEEEecceeCCCeEE
Confidence            9999999999999999986421    222344566653211112333221 222223445899999999988 5656 79


Q ss_pred             EEEECCEecccCCcceE------EEcCCC-CceeeEEEEccCCCCC-ceeEEEEEEcCCCcceE
Q psy7036         145 IWSHSGVQVKEDKRHKF------SIDKDG-HSYFASLEIIDVTIED-AGKYKVTAKNELGESNA  200 (254)
Q Consensus       145 ~W~~~~~~~~~~~~~~~------~~~~~~-~~~~~~l~i~~~~~~d-~G~y~C~~~~~~~~~~~  200 (254)
                      .|+++|..+........      ....++ +...+.|.|.....+| .|.|+|.+.|.......
T Consensus       184 ~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~~g~YtC~v~~~~l~~~~  247 (270)
T 3qib_D          184 SWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLSEND  247 (270)
T ss_dssp             EEEETTEEECTTEEECSSCEESCTTSSSCCEEEEEEEEEEHHHHHSTTCEEEEEEEECCBCTTS
T ss_pred             EEEECCEECCCCcccccccccccccCCCCCEEEEEEEEEcHHHhccCCCeEEEEEEecCCCCcc
Confidence            99999988864321100      000122 2334578888887777 99999999998665443

>1bec_A 14.3.D T cell antigen receptor; T cell receptor; 1.70A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1jck_A 1l0x_A 1sbb_A 1l0y_A 3c6l_B 1mwa_B* 1g6r_B* 1tcr_B* 2ckb_B 2q86_B* 1lp9_F 2j8u_F 2jcc_F 2uwe_F 3mbe_D* 1d9k_B* 2aq3_A 3mc0_A 3byt_A 3bzd_A ...

Probab=99.84  E-value=9.1e-20  Score=131.80  Aligned_cols=184  Identities=13%  Similarity=0.214  Sum_probs=113.5

Q ss_pred             eEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeCC--E---Eee---e---------CCcceEEEeecCCcceEEEEEE
Q psy7036          11 FTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGE--T---QLS---E---------DTRTVMKTTPIGTNKYLVALEL   73 (254)
Q Consensus        11 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~--~---~~~---~---------~~~~~~~~~~~~~~~~~~~l~i   73 (254)
                      +++.|..+.+.+|++|+|.|.+. .+.+.+.|||++  .   .+.   .         ..++.+.  ..  ....++|.|
T Consensus         2 v~q~p~~v~v~~G~~v~L~C~~~-~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~--~~--~~~~~~L~I   76 (238)
T 1bec_A            2 VTQSPRNKVAVTGGKVTLSCQQT-NNHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKAS--RP--SQEQFSLIL   76 (238)
T ss_dssp             EEEECSEEEEETTCCEEEEEEES-SCCSEEEEEEECTTSCEEEEEEEEETTEEEECSCCTTCEEE--CC--SSSEEEEEE
T ss_pred             cccCCCeeEEeCCCcEEEEEEeC-CCCceEEEEEECCCCCEEEEEEEeCCCcccCCCccceEEEE--ec--CCCEEEEEE
Confidence            45678888999999999999985 467889999853  1   110   0         1122211  11  123458999


Q ss_pred             eccCCCCCeEEEEEEEcCCC---c--eEEEEEEEEeccccCCCCCcccc-CCCeeeecCCCeEEEEEEEeeC-CCC-eEE
Q psy7036          74 DDVIETDAGLYKVKAKNKMG---E--VAASINLNFSREQIDGLAPTFLK-KPSIRQEDDGKRLLFECRIQAD-PAP-TVI  145 (254)
Q Consensus        74 ~~~~~~d~G~Y~C~~~~~~~---~--~~~~~~l~v~~~~~~~~~~~~~~-~~~~~~~~~g~~~~l~C~~~~~-~~~-~~~  145 (254)
                      .+++.+|+|.|.|.+.+..+   .  ......|.|........+|.+.. .+....+..|+.+.|.|.+.+. |.+ .+.
T Consensus        77 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~  156 (238)
T 1bec_A           77 ELATPSQTSVYFCASGGGRGSYAEQFFGPGTRLTVLEDLRQVTPPKVSLFEPSKAEIANKQKATLVCLARGFFPDHVELS  156 (238)
T ss_dssp             SSCCGGGCEEEEEEEESCTTCGGGCEECCCEEEEEESCGGGCBCCEEEEECCCSTTCSSSCSCSEEEEEEEEBSCCEEEE
T ss_pred             ecCCcccCEEEEEEEecCCCCccccccCCCEEEEEeccCCCCCCCceEEECCChHHcccCCceEEEEEEeeEeCCCcEEE
Confidence            99999999999999998642   1  11234566653211112444332 2233345578999999999986 654 899


Q ss_pred             EEECCEecccCCcc--eEEEcCCCC-ceeeEEEEccCCCCC-ceeEEEEEEcCCCcce
Q psy7036         146 WSHSGVQVKEDKRH--KFSIDKDGH-SYFASLEIIDVTIED-AGKYKVTAKNELGESN  199 (254)
Q Consensus       146 W~~~~~~~~~~~~~--~~~~~~~~~-~~~~~l~i~~~~~~d-~G~y~C~~~~~~~~~~  199 (254)
                      |++++..+......  ......++. ...+.|.|......| .|.|+|.|.|......
T Consensus       157 W~~~g~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~~~ytC~v~~~~l~~~  214 (238)
T 1bec_A          157 WWVNGKEVHSGVSTDPQAYKESNYSYCLSSRLRVSATFWHNPRNHFRCQVQFHGLSEE  214 (238)
T ss_dssp             EEETTEEECTTEEECSSCEEEETTEEEEEEEECCCHHHHTCTTCEEEEEEEECCCCTT
T ss_pred             EEECCEECCCceecccceEeCCCCCEEEEEEEEEcHHHhccCCCeEEEEEEcCCCCCC
Confidence            99999887543211  111122221 223445555444444 6789999999754433

>4acp_A IG gamma-1 chain C region; immune system, antibody, kifunensine; HET: NAG; 2.49A {Homo sapiens} PDB: 2j6e_A*

Probab=99.84  E-value=1.2e-20  Score=135.86  Aligned_cols=189  Identities=14%  Similarity=0.192  Sum_probs=115.6

Q ss_pred             CCeeEeCCCcee-ecCCCeEEEEEEEeeCC----CCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCe
Q psy7036           8 APSFTQKPQLRQ-EDEGNRLIFECQLLCNP----KPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAG   82 (254)
Q Consensus         8 ~p~~~~~~~~~~-v~~g~~v~l~C~~~~~~----~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G   82 (254)
                      ++.++..|.... +..|+.++|.|.+.|..    ...|+|+|+|..+............++.....+.|.|......|.|
T Consensus        23 P~v~i~~ps~~~~l~~g~~~~L~C~v~g~~p~P~~i~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~  102 (240)
T 4acp_A           23 PSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGK  102 (240)
T ss_dssp             CEEEEECCCHHHHHSSSSCCEEEEEEESCCC--CCCEEEEEETTEEECCCEECCCEEC---CEEEEEEEECCHHHHHHTC
T ss_pred             CEEEEECcChHHhcccCCCcEEEEEEeccccCCCccEEEEEECCcccCCceeccceECCCCeEEEEEEEEEechhccCCC
Confidence            334555666555 66799999999998853    3479999999988543222221222233334457888888888899


Q ss_pred             EEEEEEEcCCCceEEEEEEEEeccccCCCCCccccCCCeeeecCCCeEEEEEEEeeC-CCC-eEEEEECCEecccCCcce
Q psy7036          83 LYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQAD-PAP-TVIWSHSGVQVKEDKRHK  160 (254)
Q Consensus        83 ~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~-~~~W~~~~~~~~~~~~~~  160 (254)
                      .|+|.+.+..+.......+....  ....+|.+...........|+.+.|.|.+.++ |.+ .+.|++++..+.......
T Consensus       103 ~YtC~v~h~~~~~~~~~~i~~~~--~~~~~P~V~v~~~~~~~~~g~~~~L~C~~~gf~P~~i~v~W~k~g~~~~~~~~~~  180 (240)
T 4acp_A          103 EYKCKVSNKALPAPIEKTISKAK--GQPREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKATP  180 (240)
T ss_dssp             CEEEEEECC----CEEEEECCCC--SCCBCCEEEEECCCGGGGGSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECC
T ss_pred             EEEEEEEcCCCCccccccccccC--CCCCCCEEEEECCChHHhcCCceEEEEEEeEEeCCCcEEEEEECCEECCCcCccC
Confidence            99999998776422222222100  11234444333222222348899999999984 543 799999998864332222


Q ss_pred             EEEcCCCC-ceeeEEEEccCCCCCceeEEEEEEcCCCcc
Q psy7036         161 FSIDKDGH-SYFASLEIIDVTIEDAGKYKVTAKNELGES  198 (254)
Q Consensus       161 ~~~~~~~~-~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~  198 (254)
                      .....++. ...+.|.|.....++.|.|+|.|.+.....
T Consensus       181 ~~~~~dgt~~~~s~L~v~~~~~~~~~~ytC~V~h~~l~~  219 (240)
T 4acp_A          181 PVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEALHN  219 (240)
T ss_dssp             CEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTTSGG
T ss_pred             ceECCCCCEEEEEEEEEChHHhCCCCEEEEEEEECCCCC
Confidence            22333332 334677777666678899999999976543

>2aty_A Complement receptor chimeric conjugate CR2-IG; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}

Probab=99.84  E-value=9.7e-20  Score=140.20  Aligned_cols=184  Identities=11%  Similarity=0.129  Sum_probs=118.6

Q ss_pred             EeCCCcee-ecCCCeEEEEEEEeeC---CC-CceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEE
Q psy7036          12 TQKPQLRQ-EDEGNRLIFECQLLCN---PK-PDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKV   86 (254)
Q Consensus        12 ~~~~~~~~-v~~g~~v~l~C~~~~~---~~-~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C   86 (254)
                      +..+.... +.+|++++|.|.+.+.   |. ..|+|+|++..+.............+.....+.|.|.+++.+|+|.|+|
T Consensus       171 ~~~p~~~~~~~~g~~v~L~C~~~g~~P~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~D~g~Y~C  250 (376)
T 2aty_A          171 IFPPKPKDVLTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTQPREEQFNSTFRSVSELPIMHQDWLNGKEFKC  250 (376)
T ss_pred             EeCcCHHHceeeCCeeEEEEEEeccccCCCccEEEEEECCccccCcccCCCCcccCCcEEEEEEEEechHhccCCCEEEE
Confidence            44555444 7899999999999876   32 3699999986653222111111122223344579999999999999999


Q ss_pred             EEEcCCCceEEEEEEEEeccccCCCCCccccCCCeeeecCCCeEEEEEEEeeCC--CCeEEEEECCEecccCCcceEEEc
Q psy7036          87 KAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQADP--APTVIWSHSGVQVKEDKRHKFSID  164 (254)
Q Consensus        87 ~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~--~~~~~W~~~~~~~~~~~~~~~~~~  164 (254)
                      .+.+..+.......+.+..  ....+|.+...+.......|+.++|.|.+.+++  .+.+.|+|++..+...........
T Consensus       251 ~~~~~~~~~~~~~~v~~~~--~~~~~P~v~v~~~~~~~~~g~~~~L~C~~~g~~P~~i~v~W~k~g~~~~~~~~~~~~~~  328 (376)
T 2aty_A          251 RVNSAAFPAPIEKTISKTK--GRPKAPQLYTIPPPKEQMAKDKVSLTCMITDFFPEDITVEWQWNGQPAENYKNTQPIMN  328 (376)
T ss_pred             EEecCCCCCceEEEEcCCC--CCCcCCeEEeeCCCHHHhcCCceEEEEEEEEeECCCcEEEEEECCEECCCeEeCCceEC
Confidence            9998776433322332210  112455544444433344588999999999864  457999999988754332222223


Q ss_pred             CCCC-ceeeEEEEccCCCCCceeEEEEEEcCCCc
Q psy7036         165 KDGH-SYFASLEIIDVTIEDAGKYKVTAKNELGE  197 (254)
Q Consensus       165 ~~~~-~~~~~l~i~~~~~~d~G~y~C~~~~~~~~  197 (254)
                      .++. ...+.|.|.....+|.|.|+|.|.|....
T Consensus       329 ~dgty~~~s~L~i~~~~~~~~~~YtC~v~h~~l~  362 (376)
T 2aty_A          329 TNESYFVYSKLNVQKSNWEAGNTFTCSVLHEGLH  362 (376)
T ss_pred             CCCCEEEEEEEEEcHHHhCCCCcEEEEEEeCCCC
Confidence            3332 44567888877778899999999997654

>1ypz_F T-cell receptor gamma chain, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.84  E-value=8.1e-20  Score=131.32  Aligned_cols=192  Identities=15%  Similarity=0.197  Sum_probs=116.2

Q ss_pred             eeEeCCCceeecCCCeEEEEEEEeeC--CCCceEEEeCC-----EEe-eeC----------CcceEEEeecCCcceEEEE
Q psy7036          10 SFTQKPQLRQEDEGNRLIFECQLLCN--PKPDIVWFRGE-----TQL-SED----------TRTVMKTTPIGTNKYLVAL   71 (254)
Q Consensus        10 ~~~~~~~~~~v~~g~~v~l~C~~~~~--~~~~v~W~~~~-----~~~-~~~----------~~~~~~~~~~~~~~~~~~l   71 (254)
                      .+.+.|..+.+.+|++|+|.|.+.+.  +...+.|||..     ..+ ...          ...++....+ .......|
T Consensus         3 ~v~q~p~~v~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~-~~~~~~~L   81 (230)
T 1ypz_F            3 KLEQPEISISRPRDETAQISCKVFIESFRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKN-PSASTSIL   81 (230)
T ss_dssp             SEECSCSEEEEETTSCEEEEEEECCGGGGGCCEEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEEC-CTTTEEEE
T ss_pred             cccccCCEEEEeCCCcEEEEEEeeccccCccEEEEEEECCCCCCEEEEEEecCCeeecCcccCCeEEEEEc-CCCCEEEE
Confidence            35667888899999999999999764  56789999842     111 100          1122222211 12234589


Q ss_pred             EEeccCCCCCeEEEEEEEcC--CCc--eEEEEEEEEeccccC---CCCCcc-ccCCCeeeecCCCeEEEEEEEeeC-CC-
Q psy7036          72 ELDDVIETDAGLYKVKAKNK--MGE--VAASINLNFSREQID---GLAPTF-LKKPSIRQEDDGKRLLFECRIQAD-PA-  141 (254)
Q Consensus        72 ~i~~~~~~d~G~Y~C~~~~~--~~~--~~~~~~l~v~~~~~~---~~~~~~-~~~~~~~~~~~g~~~~l~C~~~~~-~~-  141 (254)
                      .|.+++.+|+|.|.|.+.+.  ...  ......|.|......   ..+|.. ...+....+..|+.++|.|.+.+. |. 
T Consensus        82 ~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~L~V~~~~~~l~~~~~p~~~v~~p~~~~v~~g~~~~L~C~~~g~~P~~  161 (230)
T 1ypz_F           82 TIYSLEEEDEAIYYCSYGEGSSGFHKVFAEGTKLIVIPSDKRLDADISPKPTIFLPSVAETNLHKTGTYLCLLEAFFPDV  161 (230)
T ss_dssp             EECSCCGGGCSEEEEEECCTTTCCCCEECSCEEEEEECCCTTCCSCCSCCCCEECCCHHHHHHHSCEEEEEEEEEESSCC
T ss_pred             EECcCChhhCEEEEEEEECCCCCcccccCCCEEEEEecccccCcccCCCCceEECCCchhhccCCcceEEEEEeeecCCC
Confidence            99999999999999999874  111  112346676521000   011211 111222334458889999999886 65 


Q ss_pred             CeEEEEE-CCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcceEEEEE
Q psy7036         142 PTVIWSH-SGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISL  204 (254)
Q Consensus       142 ~~~~W~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~  204 (254)
                      +.+.|++ ++..+..............+...+.|.|..... + |.|+|.+.|..+....+..+
T Consensus       162 ~~v~W~~~~g~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~-~-~~ytC~v~~~~~~~~~~~~~  223 (230)
T 1ypz_F          162 IRVYWKEKDGNTILDSQEGDTLKTNDTYMKFSWLTVPERAM-G-KEHRCIVKHENNKGGADQAI  223 (230)
T ss_dssp             CEEEEECTTSSCBCCCEECCCEEETTEEEEEEEEEECGGGT-T-SCEEEEEECSSCTTTSCEEE
T ss_pred             eEEEEEccCCeEccccccceeecCCCCEEEEEEEEEEhhhC-C-CEEEEEEEECCCCCceeEee
Confidence            5899999 776664322111111122223346788887765 4 89999999987765544444

>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2

Probab=99.84  E-value=1.3e-20  Score=143.64  Aligned_cols=193  Identities=14%  Similarity=0.194  Sum_probs=116.8

Q ss_pred             CCCeeEeCCCceeecCCCeEEEEEEEeeC-CC-CceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEE
Q psy7036           7 FAPSFTQKPQLRQEDEGNRLIFECQLLCN-PK-PDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLY   84 (254)
Q Consensus         7 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~-~~-~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y   84 (254)
                      .+|.+...+....+.+|+.++|.|.+.|. |. +.++|++++..+........ ....+.....+.|.|.++..+| |.|
T Consensus       119 ~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~~-~~~~~~~~~~s~L~i~~~~~~d-G~Y  196 (344)
T 1za6_B          119 KGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAV-LQSSGLYSLSSVVTVPSSSLGT-QTY  196 (344)
T ss_dssp             BCCEEEEECCSCTTTSSSEEEEEEEEEEEBSSCCCEEETTTTBCTTEEECCCE-ECTTSCEEEEEEEEEETTHHHH-BCE
T ss_pred             CCCeEEEccccccccCCCcEEEEEEEeeEECCCeEEEEecCCccCceeECCCe-ECCCCCEEEEEEEEEcHHHcCC-CcE
Confidence            34555544434456799999999999885 64 79999999875321100000 1111222233479999988888 999


Q ss_pred             EEEEEcCCCceEEEEEEEEec------------------cccCCCCCccccCCCeeeecCCCeEEEEEEEeeC-C-CCeE
Q psy7036          85 KVKAKNKMGEVAASINLNFSR------------------EQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQAD-P-APTV  144 (254)
Q Consensus        85 ~C~~~~~~~~~~~~~~l~v~~------------------~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~-~~~~  144 (254)
                      +|.+.|..+.......+.+..                  ......+|.+...........|..+.|.|.+.+. | .+.+
T Consensus       197 ~C~a~n~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~~~~P~v~~~~~~~~~~~~~~~~L~C~~~g~~P~~~~v  276 (344)
T 1za6_B          197 ICNVNHKPSNTKVDKKVEPKSCDKTHTCPPCGGGSSGGGSGGQPREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAV  276 (344)
T ss_dssp             EEEEEEGGGTEEEEEEECCCCC--------------------CCBCCEEEEECCCGGGGGSSSEEEEEEEEEEBSSCCEE
T ss_pred             EEEEEeCCCCccceEeecccccccccccCCCCCCccccccCCCCcCCEEEEeCCChHhccCCcEEEEEEEeeEECCCeEE
Confidence            999999887643333322100                  0001133433222211112246669999999985 4 3589


Q ss_pred             EEEECCEecccCCcceEEEcCCCC-ceeeEEEEccCCCCCceeEEEEEEcCCCcceEE
Q psy7036         145 IWSHSGVQVKEDKRHKFSIDKDGH-SYFASLEIIDVTIEDAGKYKVTAKNELGESNAT  201 (254)
Q Consensus       145 ~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~  201 (254)
                      .|+++|..+............++. ...+.|.|.....+|.|.|+|.|.|........
T Consensus       277 ~W~k~g~~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~~~g~YtC~a~~~~l~~~~~  334 (344)
T 1za6_B          277 EWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEALHNHYT  334 (344)
T ss_dssp             EEESSSSCCCSEEECCCEECTTSCEEEEEEEEECHHHHHTTCEEEEEEECTTSTTSEE
T ss_pred             EEEECCeECCCcEecceEECCCCcEEEEEEEEEChHHccCCCeEEEEEEcCCCCCCee
Confidence            999999887543322233333432 334567777777778999999999987654443

>3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D, mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo sapiens}

Probab=99.84  E-value=5.3e-20  Score=134.25  Aligned_cols=184  Identities=13%  Similarity=0.176  Sum_probs=112.5

Q ss_pred             eEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeC--CE---Ee-eeCCc---------c-eEEEeecCCcceEEEEEEe
Q psy7036          11 FTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRG--ET---QL-SEDTR---------T-VMKTTPIGTNKYLVALELD   74 (254)
Q Consensus        11 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~--~~---~~-~~~~~---------~-~~~~~~~~~~~~~~~l~i~   74 (254)
                      +.+.|..+.+.+|++|+|.|.+.+.+.+.+.|||.  +.   .+ .....         . ++.........    |.|.
T Consensus         4 v~q~p~~v~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~----L~I~   79 (253)
T 3to4_D            4 LEQNPRWRLVPRGQAVNLRCILKNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRVTDTE----LRLQ   79 (253)
T ss_dssp             CEEECSEEEEESSCCEEEEEECSCTTCCCEEEEEEETTCCEEEEEEECSTTCEEEEEETTEEEEEECCSSSC----CEEE
T ss_pred             EEeCCCeEEEeCCCcEEEEEEeCCCCcceEEEEEECCCCCcEEEEEECCCcceecCCccCCcEEEEeCCCCe----EEEc
Confidence            45667788899999999999988788889999982  11   11 10000         0 22211111111    9999


Q ss_pred             ccCCCCCeEEEEEEEcCCC------ceEEEEEEEEeccccCCCCCcccc-CCCeeeecCCCeEEEEEEEee-CCCC-eEE
Q psy7036          75 DVIETDAGLYKVKAKNKMG------EVAASINLNFSREQIDGLAPTFLK-KPSIRQEDDGKRLLFECRIQA-DPAP-TVI  145 (254)
Q Consensus        75 ~~~~~d~G~Y~C~~~~~~~------~~~~~~~l~v~~~~~~~~~~~~~~-~~~~~~~~~g~~~~l~C~~~~-~~~~-~~~  145 (254)
                      +++.+|+|.|.|.+.+..+      .......|.|........+|.+.. .+....+..|..++|.|.+.+ .|.+ .+.
T Consensus        80 ~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~t~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~i~v~  159 (253)
T 3to4_D           80 VANMSQGRTLYCTSSADHWTNTGQLYFGEGSKLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELS  159 (253)
T ss_dssp             EESCSSCEEEEEEEECSCCSTTCCEEECCCEEEEEESCSTTCBCCEEEEEECCHHHHHHHSEEEEEEEEEEEBSSCEEEE
T ss_pred             cCChhhCeEEEEEEecCCCCcccceEECCCEEEEEecCCCCCCCCeEEEeCCChhhcccCCceEEEEEEceEECCcEEEE
Confidence            9999999999999986543      112234566653111112333221 111122234689999999988 5666 799


Q ss_pred             EEECCEecccCCcceE--EEc----CCC-CceeeEEEEccCCCCC-ceeEEEEEEcCCCcc
Q psy7036         146 WSHSGVQVKEDKRHKF--SID----KDG-HSYFASLEIIDVTIED-AGKYKVTAKNELGES  198 (254)
Q Consensus       146 W~~~~~~~~~~~~~~~--~~~----~~~-~~~~~~l~i~~~~~~d-~G~y~C~~~~~~~~~  198 (254)
                      |+++|..+........  ...    .++ +...+.|.|.....+| .|.|+|.|.|.....
T Consensus       160 W~k~g~~l~~~~~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~~~~ytC~v~h~~l~~  220 (253)
T 3to4_D          160 WWVNGKEVHSGVSTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLSE  220 (253)
T ss_dssp             EEETTEEECTTEEECSSCEESSTTCTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECCBCT
T ss_pred             EEECCEECCCceecccccccccccCCCCCEEEEEEEEECHHHhccCCCEEEEEEEeCCCCC
Confidence            9999998754321110  000    122 2334678888877777 679999999976543

>3tv3_H PGT128 heavy chain, IG gamma-1 chain C region; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_H* 3twc_H* 3tje_H* 3thm_H* 4fqq_H 2xzc_H* 2xza_H* 3b2u_H* 3b2v_H* 3mly_H 3mlz_H 4fq2_H 2ykl_H* 3tnm_H 4fqc_H* 4fq1_H* 2yk1_H* 3mlx_H 2jix_D 2vxq_H ...

Probab=99.83  E-value=8.9e-20  Score=131.89  Aligned_cols=188  Identities=13%  Similarity=0.195  Sum_probs=114.2

Q ss_pred             CCCceeecCCCeEEEEEEEeeCC----CCceEEEeCC-----EEe---e------e--------CCcceEEEeecCCcce
Q psy7036          14 KPQLRQEDEGNRLIFECQLLCNP----KPDIVWFRGE-----TQL---S------E--------DTRTVMKTTPIGTNKY   67 (254)
Q Consensus        14 ~~~~~~v~~g~~v~l~C~~~~~~----~~~v~W~~~~-----~~~---~------~--------~~~~~~~~~~~~~~~~   67 (254)
                      .|..+.+.+|++|+|.|.+.+.+    ...+.||+..     ..+   .      .        ....++....+. ...
T Consensus         6 ~~~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~-~~~   84 (239)
T 3tv3_H            6 ESGPTLVEASETLSLTCAVSGDSTAACNSFWGWVRQPPGKGLEWVGSLSHCASYWNRGWTYHNPSLKSRLTLALDT-PKN   84 (239)
T ss_dssp             EESCSEECTTSCEEEEEEEESSCTTSSSCEEEEEEECTTSCCEEEEEEECCCCTTSSCEEEECTTTGGGEEEEEEG-GGT
T ss_pred             cCCCEEEcCCCCEEEEEEEcCCcccccceEEEEEEECCCCCcEEEEEEecccccccCCceecCccccCCEEEEEEC-CCC
Confidence            45567899999999999998654    3479999832     111   1      0        011122222111 123


Q ss_pred             EEEEEEeccCCCCCeEEEEEEEcCCC-------------ceEEEEEEEEeccccCCCCCccccCCCeeeecCCCeEEEEE
Q psy7036          68 LVALELDDVIETDAGLYKVKAKNKMG-------------EVAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFEC  134 (254)
Q Consensus        68 ~~~l~i~~~~~~d~G~Y~C~~~~~~~-------------~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C  134 (254)
                      .+.|.|.+++.+|+|.|.|.+.+..+             .......|.|..  ....+|.+........+..|+.+.|.|
T Consensus        85 ~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~w~~~~~~~~~~~~t~l~V~~--~~~~~P~v~~~~~~~~~~~g~~v~l~C  162 (239)
T 3tv3_H           85 LVFLKLNSVTAADTATYYCARFGGEVLRYTDWPKPAWVDLWGRGTLVTVSS--ASTKGPSVFPLAPSSKSTSGGTAALGC  162 (239)
T ss_dssp             EEEEEECSCCGGGCEEEEEEEEEEECSSCSSSCEEEEEEEECCCEEEEECC--CCCBCCEEEEECCCCCC--TTEEEEEE
T ss_pred             EEEEEECCCChhhCEEEEEEEecCccccccccccccceeeeCCCcEEeecc--CCCcCCEEEEECCChhhccCCcEEEEE
Confidence            45799999999999999999986531             111233555542  111334433222333345699999999


Q ss_pred             EEeeC-CCC-eEEEEECCEecccCCcceEEEcCCC-CceeeEEEEccCCCCCceeEEEEEEcCCCcceEEEEEEE
Q psy7036         135 RIQAD-PAP-TVIWSHSGVQVKEDKRHKFSIDKDG-HSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNF  206 (254)
Q Consensus       135 ~~~~~-~~~-~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~v  206 (254)
                      .+.+. |.+ .+.|++++..+........ ...++ +...+.|.|.....+| |.|+|.|.|..+.......|.+
T Consensus       163 ~~~~~~p~~~~v~W~~~g~~~~~~~~~~~-~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~~~l~~  235 (239)
T 3tv3_H          163 LVKDYFPEPVTVSWNSGALTSGVHTFPAV-LQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKRVEP  235 (239)
T ss_dssp             EEEEEBSSCCEEEEGGGTBCTTEEECCCE-ECTTSCEEEEEEEEEEGGGTTT-CCCEEEEEEGGGTEEEEEECCC
T ss_pred             EEeeEeCCCeEEEEEECCccCceEecCce-ECCCCCEEEEEEEEEchhhcCC-CEEEEEEEECCCCceEEEEecc
Confidence            99884 434 4889998865432211112 22222 2344678999888888 9999999998776655555443

>3qhz_H Human monoclonal antibody DEL2D1, FAB heavy chain; immunoglobulin, immune recognition, influenza A hemagglutini system; 1.55A {Homo sapiens} PDB: 3lzf_H* 3qrg_H* 3mod_H 3mob_H 3moa_H 3lev_H* 3idg_B 3d0l_B 3d0v_B 3idi_B 3idj_B 3idm_B* 3idn_B* 1tjg_H* 1tjh_H* 1tji_H* 2pr4_H 3drq_B 2p8m_B 2p8p_B ...

Probab=99.83  E-value=4.3e-20  Score=133.03  Aligned_cols=189  Identities=11%  Similarity=0.148  Sum_probs=111.0

Q ss_pred             CCCceeecCCCeEEEEEEEeeC--CCCce--EEEeCC-----EEe-e---eCC----------cceEEEeecCCcceEEE
Q psy7036          14 KPQLRQEDEGNRLIFECQLLCN--PKPDI--VWFRGE-----TQL-S---EDT----------RTVMKTTPIGTNKYLVA   70 (254)
Q Consensus        14 ~~~~~~v~~g~~v~l~C~~~~~--~~~~v--~W~~~~-----~~~-~---~~~----------~~~~~~~~~~~~~~~~~   70 (254)
                      .+....+.+|++|+|.|.+.+.  ....+  .|||..     ..+ .   ...          ..++....+. .....+
T Consensus         6 ~~~~~~v~~G~~v~L~C~~~~~~~~~~~i~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~-~~~~~s   84 (232)
T 3qhz_H            6 ESGPALVKPTQTLTLTCSFSGFSLSTSGMSVSWIRQPPGKALEWLALIDWDDDTYYITYSSSLKTRLTISKDT-SKSQVV   84 (232)
T ss_dssp             EECCSEECTTSCEEEEEEEESCGGGCTTCEEEEEEECTTSCCEEEEEEESSSSCEEECCCTTTTTTEEEEEET-TTTEEE
T ss_pred             cCCCEEECCCCcEEEEEEEeCcccccceeEeEEEEECCCCCcEEEEEEECCCCccccccCccccCceEEEecc-CCCEEE
Confidence            3445679999999999999753  22445  999832     111 0   000          1122222111 223457


Q ss_pred             EEEeccCCCCCeEEEEEEEcCC--------CceEEEEEEEEeccccCCCCCccccCCCeeeecCCCeEEEEEEEeeCCC-
Q psy7036          71 LELDDVIETDAGLYKVKAKNKM--------GEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQADPA-  141 (254)
Q Consensus        71 l~i~~~~~~d~G~Y~C~~~~~~--------~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~-  141 (254)
                      |.|.+++.+|+|.|.|.+.+..        ........|.|...  ...+|.+........+..|+.+.|.|.+.+.++ 
T Consensus        85 L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~l~V~~~--~~~~P~v~~~~~~~~~~~g~~v~L~C~~~~~~P~  162 (232)
T 3qhz_H           85 LTMTNMDPVDTATYYCARTLRVSGDYVRDFDLWGRGTLVTVSSA--STKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPE  162 (232)
T ss_dssp             EEECSCCGGGCEEEEEEEECCC---CCCCCCEECCCEEEEECSS--CCBCCEEEEECC-------CEEEEEEEEEEEBSS
T ss_pred             EEECcCChhhCEEEEEEEeeccCccccccceeeCCCeEEEEecC--CCCCCEEEEecccccccCCCcEEEEEEEeeEeCC
Confidence            9999999999999999998652        11223345666421  113344332222234456999999999987543 


Q ss_pred             -CeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcceEEEEEEE
Q psy7036         142 -PTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNF  206 (254)
Q Consensus       142 -~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~v  206 (254)
                       ..+.|++++..+..............+...+.|.|......| |.|+|.|.|..+.......|.+
T Consensus       163 ~~~v~W~~~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~ytC~v~~~~~~~~~~~~l~~  227 (232)
T 3qhz_H          163 PVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKRVEP  227 (232)
T ss_dssp             CCEEEEGGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGGGT-CCCEEEEEEGGGTEEEEEECCC
T ss_pred             CeEEEEEECCEecceeeccceeCCCCCEEEEEEEEEchhhcCC-CEEEEEEEeCCCCccEEEEeCC
Confidence             358899988654322111111112222344679999888888 9999999998877666665544

>3o3u_N Maltose-binding periplasmic protein, advanced Gly END product-specific receptor; RAGE, AGER, scavenger receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3s59_A 3s58_A 3cjj_A 2l7u_A* 2e5e_A

Probab=99.83  E-value=6.2e-20  Score=149.30  Aligned_cols=172  Identities=16%  Similarity=0.226  Sum_probs=117.5

Q ss_pred             CceeecCCCeEEEEEEE-eeCCCCceEEEeCCEEeeeC----------CcceEEEeecCCcceEEEEEEeccCCCCCeEE
Q psy7036          16 QLRQEDEGNRLIFECQL-LCNPKPDIVWFRGETQLSED----------TRTVMKTTPIGTNKYLVALELDDVIETDAGLY   84 (254)
Q Consensus        16 ~~~~v~~g~~v~l~C~~-~~~~~~~v~W~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y   84 (254)
                      +...+.+|++++|.|.+ .+.|.+.++|+|++..+...          ...+.....++      +|.|.+++..|+|.|
T Consensus       374 ~~~~~~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~r~~~~~~~------~L~i~~v~~~D~G~Y  447 (581)
T 3o3u_N          374 QNITARIGEPLVLKCKGAPKKPPQRLEWKLNTGRTEAWKVLSPQGGGPWDSVARVLPNG------SLFLPAVGIQDEGIF  447 (581)
T ss_dssp             EEEEEETTSCEEECCTTCCSSSSCEEEEEEEETTSSSCEECCSCCSSGGGGTSEECTTS------CEEESSCCGGGCEEE
T ss_pred             cccceecCCcEEEeeeecCCCCCceEEEEEcCCeeEEEEecccCCCCCcCCcEEEcCCc------eEEEeccccccCeEE
Confidence            44678899999999999 67888999999976522100          01111111111      699999999999999


Q ss_pred             EEEEEcCCCce-EEEEEEEEeccccCCCCCccccCCCeeeecCCC-eEEEEEEEee-CCCCeEEEEECCEecccCCcceE
Q psy7036          85 KVKAKNKMGEV-AASINLNFSREQIDGLAPTFLKKPSIRQEDDGK-RLLFECRIQA-DPAPTVIWSHSGVQVKEDKRHKF  161 (254)
Q Consensus        85 ~C~~~~~~~~~-~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~-~~~l~C~~~~-~~~~~~~W~~~~~~~~~~~~~~~  161 (254)
                      +|.+.+..+.. ...+.|.|...+   ..|.+.....  .+..+. .+.|.|.+.+ +|.+.+.|++++..+........
T Consensus       448 ~C~~~n~~~~~~~~~~~l~V~~~~---~~p~i~~~~~--~~~~~~~~~~l~C~~~~~~P~~~i~W~~~g~~l~~~~~~~~  522 (581)
T 3o3u_N          448 RCQAMNRNGKETKSNYRVRVYQIP---GKPEIVDSAS--ELTAGVPNKVGTCVSEGSYPAGTLSWHLDGKPLVPNEKGVS  522 (581)
T ss_dssp             EEEEECTTSCEEEEEEEEEEEBCC---CCCEEESCCS--EECTTSCEEEEEEEEEEEBSCCEEEEEETTEECCTTSTTEE
T ss_pred             EEEEEcCCCceeEEEEEEEEEcCC---CCCEEEcCCc--ccccCCceeEEEEECCCCCCCCeEEEEECCEECCCCCCeEE
Confidence            99999988876 677888886421   2333322222  234444 4567999988 59999999999998865433221


Q ss_pred             E-----E--cCCCCceeeEEEEccCC-CCCceeEEEEEEcCCCcc
Q psy7036         162 S-----I--DKDGHSYFASLEIIDVT-IEDAGKYKVTAKNELGES  198 (254)
Q Consensus       162 ~-----~--~~~~~~~~~~l~i~~~~-~~d~G~y~C~~~~~~~~~  198 (254)
                      .     .  ....+...++|.|..++ .++.|.|+|.+.|.....
T Consensus       523 ~~~~~~~~~~~g~y~~~s~L~i~~~~~~d~~~~y~C~~~n~~~~~  567 (581)
T 3o3u_N          523 VKEQTRRHPETGLFTLQSELMVTPARGGDPRPTFSCSFSPGLPRH  567 (581)
T ss_dssp             EEEEEEECTTTCCEEEEEEEEECCCTTSCSCCCEEEEEECSSCSS
T ss_pred             EEeeeEEcCCCceEEEEEEEEEEeccccCCCceEEEEEeccCCCC
Confidence            1     1  12223445789999988 555789999999986543

>3u2s_H PG9 heavy chain; greek KEY, immunoglobulin, immune recognition, immune system; HET: PCA TYS BU3 NAG BMA MAN; 1.80A {Homo sapiens} PDB: 3u4e_H* 3u36_H 3mug_B* 3lrs_H* 3mme_H* 2qsc_H*

Probab=99.83  E-value=3.3e-19  Score=129.46  Aligned_cols=189  Identities=11%  Similarity=0.167  Sum_probs=112.7

Q ss_pred             eCCCceeecCCCeEEEEEEEee--CCCCceEEEeCC--E---Ee-e---e--------CCcceEEEeecCCcceEEEEEE
Q psy7036          13 QKPQLRQEDEGNRLIFECQLLC--NPKPDIVWFRGE--T---QL-S---E--------DTRTVMKTTPIGTNKYLVALEL   73 (254)
Q Consensus        13 ~~~~~~~v~~g~~v~l~C~~~~--~~~~~v~W~~~~--~---~~-~---~--------~~~~~~~~~~~~~~~~~~~l~i   73 (254)
                      ..+..+.+.+|++|+|.|.+.+  .....+.|||..  .   .+ .   .        ....++....+. .....+|.|
T Consensus         4 ~~~~~v~v~~G~~v~L~C~~s~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~-~~~~~sL~I   82 (248)
T 3u2s_H            4 VESGGGVVQPGSSLRLSCAASGFDFSRQGMHWVRQAPGQGLEWVAFIKYDGSEKYHADSVWGRLSISRDN-SKDTLYLQM   82 (248)
T ss_dssp             EEECCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEEG-GGTEEEEEE
T ss_pred             ecCCCEEEeCCCCEEEEEEeccccCCccEEEEEEECCCCCcEEEEEEecCCCceecCcccCCcEEEEecC-CCCEEEEEE
Confidence            4566788999999999999975  235679999732  1   11 0   0        011122222111 123458999


Q ss_pred             eccCCCCCeEEEEEEEcCC----------------------CceEEEEEEEEeccccCCCCCccccCCCeeeecCCCeEE
Q psy7036          74 DDVIETDAGLYKVKAKNKM----------------------GEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLL  131 (254)
Q Consensus        74 ~~~~~~d~G~Y~C~~~~~~----------------------~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~  131 (254)
                      .+++.+|+|.|.|.+.+..                      ........|.|..  ....+|.+........+..|+.+.
T Consensus        83 ~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~V~~--~~~~~P~v~~~~~~~~~~~g~~~~  160 (248)
T 3u2s_H           83 NSLRVEDTATYFCVREAGGPDYRNGYNYYDFYDGYYNYHYMDVWGKGTTVTVSS--ASTKGPSVFPLAPSSKSTSGGTAA  160 (248)
T ss_dssp             CSCCGGGCEEEEEEEEEEECEEETTEEEECGGGCCEEEEEEEEECCCEEEEECS--CCCBCCEEEEECCC------CEEE
T ss_pred             CCCCHHHCEEEEEEEeCCCCccccccccccccccccccccceeeCCCEEEEEcc--cCCCCCEEEEeCCCccccCCCcEE
Confidence            9999999999999998641                      1111234555542  111333333222223345689999


Q ss_pred             EEEEEeeC-C-CCeEEEEECCEecccCCcceEEEcCCC-CceeeEEEEccCCCCCceeEEEEEEcCCCcceEEEEEEE
Q psy7036         132 FECRIQAD-P-APTVIWSHSGVQVKEDKRHKFSIDKDG-HSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNF  206 (254)
Q Consensus       132 l~C~~~~~-~-~~~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~v  206 (254)
                      |.|.+.+. | ...+.|++++..+........ ...++ +...+.|.|.....+| |.|+|.+.|..+.......+.+
T Consensus       161 L~C~~~~~~P~~~~v~W~~~g~~~~~~~~~~~-~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~~~l~~  236 (248)
T 3u2s_H          161 LGCLVKDYFPEPVTVSWNSGALTSGVHTFPAV-LQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKVEP  236 (248)
T ss_dssp             EEEEEEEEBSSCCEEEEGGGTBCTTEEECCCE-ECTTSCEEEEEEEEEEGGGBTT-BCCEEEEEEGGGTEEEEEECCC
T ss_pred             EEEEEeeEECCCeEEEEeECCccCceeecCce-ECCCCCEEEEEEEEEChhhcCC-CeEEEEEEECCCCcceEEEEcc
Confidence            99999874 4 356999998865432211111 22233 2344678888888888 9999999998776665555443

>1oga_E TRBC1, T-cell receptor beta chain C region; immune system/receptor, immune system/receptor/complex, TCR, MHC, immunodominance, FLU, complex; 1.40A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 2vlm_E 2vlk_E 2vlj_E 2vlr_E 2xna_B 2xn9_B 2axh_A 2axj_A 3scm_D* 3sda_D* 3sdc_D* 3sdd_D* 3qi9_D* 3mff_B* 2ak4_E 3he7_D* 2eyr_B 3pqy_E 3kxf_E 2cde_B ...

Probab=99.82  E-value=1.8e-19  Score=131.35  Aligned_cols=188  Identities=13%  Similarity=0.177  Sum_probs=115.5

Q ss_pred             CeeEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeCC--E---Eeee--C--------CcceEEEeecCCcceEEEEEE
Q psy7036           9 PSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGE--T---QLSE--D--------TRTVMKTTPIGTNKYLVALEL   73 (254)
Q Consensus         9 p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~--~---~~~~--~--------~~~~~~~~~~~~~~~~~~l~i   73 (254)
                      +.+.+.|..+.+.+|++++|.|.+. .+.+.+.|||+.  .   .+..  .        ...++......  .....|.|
T Consensus         4 ~~v~q~p~~v~v~~G~~v~L~C~~~-~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~--~~~~~L~I   80 (252)
T 1oga_E            4 GGITQSPKYLFRKEGQNVTLSCEQN-LNHDAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVSREK--KESFPLTV   80 (252)
T ss_dssp             -CEECSCSEEEEETTCCEEECCEEC-SCCSEEEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEECCSS--TTBCCEEE
T ss_pred             ccceEcCCeEEEcCCCcEEEEEEeC-CCCCEEEEEEECCCCCeEEEEEEccCccccCCccCCcEEEEecC--CCEEEEEE
Confidence            3567778888999999999999985 457889999853  1   1110  0        11122222111  12237999


Q ss_pred             eccCCCCCeEEEEEEEcCC---CceEEEEEEEEeccccCCCCCcccc-CCCeeeecCCCeEEEEEEEeeC-CCC-eEEEE
Q psy7036          74 DDVIETDAGLYKVKAKNKM---GEVAASINLNFSREQIDGLAPTFLK-KPSIRQEDDGKRLLFECRIQAD-PAP-TVIWS  147 (254)
Q Consensus        74 ~~~~~~d~G~Y~C~~~~~~---~~~~~~~~l~v~~~~~~~~~~~~~~-~~~~~~~~~g~~~~l~C~~~~~-~~~-~~~W~  147 (254)
                      .+++.+|+|.|.|.+.+..   ........|.|........+|.+.. .+....+..|+.+.|.|.+.+. |.+ .+.|+
T Consensus        81 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~  160 (252)
T 1oga_E           81 TSAQKNPTAFYLCASSSRSSYEQYFGPGTRLTVTEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWW  160 (252)
T ss_dssp             CSCCSCCCEEEEEEEESSTTSCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEE
T ss_pred             CcCChhhCEEEEEEEecCCccceeECCCEEEEEecccCCCCCCeEEEECCChhhhccCCceEEEEEEeeEcCCCcEEEEE
Confidence            9999999999999999752   1112234566653111113443332 2222234468899999999885 654 89999


Q ss_pred             ECCEecccCCcce--EE----EcCCC-CceeeEEEEccCCCC-CceeEEEEEEcCCCcce
Q psy7036         148 HSGVQVKEDKRHK--FS----IDKDG-HSYFASLEIIDVTIE-DAGKYKVTAKNELGESN  199 (254)
Q Consensus       148 ~~~~~~~~~~~~~--~~----~~~~~-~~~~~~l~i~~~~~~-d~G~y~C~~~~~~~~~~  199 (254)
                      +++..+.......  ..    ...++ +...+.|.|...... |.|.|+|.+.|......
T Consensus       161 ~~g~~l~~~~~~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~d~~~~ytC~v~~~~l~~~  220 (252)
T 1oga_E          161 VNGKEVHSGVSTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYGLSEN  220 (252)
T ss_dssp             ETTEEECSSEEECSSCEESCTTSTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECCBCTT
T ss_pred             ECCEECCCCcccccccccccccCCCCCEEEEEEEEECHHHhccCCCEEEEEEEcCCCCCC
Confidence            9998875432110  00    01222 233456888766654 57799999999866544

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A

Probab=99.82  E-value=1.1e-18  Score=123.91  Aligned_cols=137  Identities=26%  Similarity=0.521  Sum_probs=108.2

Q ss_pred             CCCccccCCCeeeecCCCeEEEEEEEeeCCCCeEEEEECCEeccc-CCcceEEEcCCCCceeeEEEEccCCC-CCceeEE
Q psy7036         111 LAPTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKE-DKRHKFSIDKDGHSYFASLEIIDVTI-EDAGKYK  188 (254)
Q Consensus       111 ~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~-~d~G~y~  188 (254)
                      .+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+.. ..........++.   +.|.|.++.. +|+|.|+
T Consensus         5 ~pP~~~~~p~~~~v~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~---~~L~i~~v~~~~d~G~Y~   81 (212)
T 2yd1_A            5 HPPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGI---SILRIEPVRAGRDDAPYE   81 (212)
T ss_dssp             CCCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEETTEECCTTSTTEEEEEETTTE---EEEEESSCCTTTTCSEEE
T ss_pred             CCCEEEcCCCceEEecCCEEEEEEEEccCCCCeEEEEECCEECCCCcceeEEEEcCCCe---EEEEEEecCCCCcCceEE
Confidence            567777777778889999999999999999999999999998863 2333333222322   3899999999 9999999


Q ss_pred             EEEEcCCCc-ceEEEEEEEecCCCCCCCCCCCCeeecCCccccccCCCCcEEEEEEEeccCCCceeC
Q psy7036         189 VTAKNELGE-SNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLVGEPEPTISW  254 (254)
Q Consensus       189 C~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~l~C~~~~~p~p~~~W  254 (254)
                      |.+.|..+. ....+.|.|.......   ...|.+...+....+.+|+ .+.|.|.+.|.|.|.++|
T Consensus        82 C~~~n~~g~~~~~~~~l~V~~~~~~~---~~~p~~~~~~~~~~~~~g~-~v~l~C~~~g~p~p~i~W  144 (212)
T 2yd1_A           82 CVAENGVGDAVSADATLTIYEGDKTP---AGFPVITQGPGTRVIEVGH-TVLMTCKAIGNPTPNIYW  144 (212)
T ss_dssp             EEEECSSSCEEEEEEEEEEECTTCSC---TTCCEEEECCCCEEEETTC-CEEECCEEECSSCCEEEE
T ss_pred             EEEEeCCCCeEEeeEEEEEecccCCC---CCCCeeEeCCCceEeecCC-eEEEEEEeccCCCCeEEE
Confidence            999999888 6777888887533221   1247777777777788899 999999999999999998

>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4

Probab=99.82  E-value=6.6e-19  Score=129.71  Aligned_cols=207  Identities=15%  Similarity=0.157  Sum_probs=104.9

Q ss_pred             eEeCCCceeecCCCeEEEEEEEeeCCCCc-eEEEeC--CEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEE
Q psy7036          11 FTQKPQLRQEDEGNRLIFECQLLCNPKPD-IVWFRG--ETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVK   87 (254)
Q Consensus        11 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~-v~W~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~   87 (254)
                      +.+.|+...|.+|+++.|+|.+. .+.+. +.|.-.  +..+...            +.....+.|.+++..  |.|.|.
T Consensus         2 ~~v~P~~~~V~~G~sv~l~Cs~~-c~~p~~~~~~t~l~~~~~~~~------------g~~~~~~~l~~v~~~--~~y~C~   66 (291)
T 1mq8_A            2 TSVSPSKVILPRGGSVLVTCSTS-CDQPKLLGIETPLPKKELLLP------------GNNRKVYELSNVQED--SQPMCY   66 (291)
T ss_dssp             EEEECSEEEECTTCEEEEEEEEC-CSSCSEEEEECSSCCCCCCCS------------CSSEEEEEEESCCSC--CCCEEE
T ss_pred             eEEeCCccEEcCCCeEEEEEeCC-CCCCccceEEecCCCcccccC------------CCceEEEEEEecccC--CeEEEE
Confidence            45667788999999999999996 44444 888531  1111000            111115788888743  469999


Q ss_pred             EEcCCCceEEEEEEEEeccccCCCCCccccCCCeeeecCCCeEEEEEEEeeCCC-C--eEEEEECCEecccCCcceEEEc
Q psy7036          88 AKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQADPA-P--TVIWSHSGVQVKEDKRHKFSID  164 (254)
Q Consensus        88 ~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~-~--~~~W~~~~~~~~~~~~~~~~~~  164 (254)
                      +..........+.|.|...     |...........+.+|+.++|.|.+.+..+ .  .|.|+|+++.+.....      
T Consensus        67 ~~~~~~~~~~~v~l~V~~~-----P~~v~I~~~~~~~~~G~~~~LtC~v~g~~P~~~l~itW~kg~~~l~~~~~------  135 (291)
T 1mq8_A           67 SNCPDGQSTAKTFLTVYWT-----PERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPA------  135 (291)
T ss_dssp             EECSSCEEEEECEEEECBC-----CSCCCBCCCCSBCCSSCCCEEEEEECCCBSTTTEEEEEESSSSEEEEEEC------
T ss_pred             EEcCCccEEEEEEEEEecC-----CCCCEEecCCccccCCCCEEEEEEecCccCCCCcEEEEEECCEEeecccC------
Confidence            9754444556667777631     222222222234778999999999887543 3  5899999977753321      


Q ss_pred             CCCCceeeEEEEccCCCCCceeEEEEEEcCCCc--------ceEEEEEEEecCCCCCCCCCCCCeeecCCccccccCCCC
Q psy7036         165 KDGHSYFASLEIIDVTIEDAGKYKVTAKNELGE--------SNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLN  236 (254)
Q Consensus       165 ~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~--------~~~~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~  236 (254)
                       ........+.+...+.+|.+.|+|+|.|..+.        .+....+.|...++      ..+.+.. |.  .+.+|+ 
T Consensus       136 -~~~~~~~~l~~~~~~~D~g~~~~C~A~~~l~~~g~~l~~~~s~~~~L~V~~~P~------~~~~~~~-p~--~l~eG~-  204 (291)
T 1mq8_A          136 -VGEPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPA------TPPQLVS-PR--VLEVDT-  204 (291)
T ss_dssp             -CBTTEEEEEECCCSSSCSSCEEEEEEEEECGGGTSCEEEECCCCEECBC------------------------------
T ss_pred             -CCCCceEEEEeeeeeccCCceEEEEEEecCCccCCccccccccceEEEEEecCC------CCceecC-Cc--CccCCC-
Confidence             01112236777766677777999999987553        13334555543111      0122222 22  456788 


Q ss_pred             cEEEEEEEeccCCC---ceeC
Q psy7036         237 DIVIECRLVGEPEP---TISW  254 (254)
Q Consensus       237 ~~~l~C~~~~~p~p---~~~W  254 (254)
                      .+.|.|.+.|.|++   .++|
T Consensus       205 ~v~l~C~~~g~~P~~~~~v~w  225 (291)
T 1mq8_A          205 QGTVVCSLDGLFPVSEAQVHL  225 (291)
T ss_dssp             ---------------------
T ss_pred             eEEEEEEcCCCCCCcccEEEE
Confidence            99999999998554   4777

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}

Probab=99.81  E-value=1.1e-18  Score=122.21  Aligned_cols=132  Identities=19%  Similarity=0.418  Sum_probs=103.7

Q ss_pred             CCccccCCCeeeecCCCeEEEEEEEe-eCCCCeEEEEECCEecccCCc--ceEEEcCCCC-ce--eeEEEEccCCCCCce
Q psy7036         112 APTFLKKPSIRQEDDGKRLLFECRIQ-ADPAPTVIWSHSGVQVKEDKR--HKFSIDKDGH-SY--FASLEIIDVTIEDAG  185 (254)
Q Consensus       112 ~~~~~~~~~~~~~~~g~~~~l~C~~~-~~~~~~~~W~~~~~~~~~~~~--~~~~~~~~~~-~~--~~~l~i~~~~~~d~G  185 (254)
                      +|.+...+....+.+|+.+.|.|.+. +.|.+.+.|++++..+.....  .++....++. .+  .+.|.|.+++.+|+|
T Consensus         2 ~~~~~~~p~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G   81 (195)
T 2c5d_C            2 ESPFVGNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQDDWIVVSQLRITSLQLSDTG   81 (195)
T ss_dssp             CCSEEECCCCEEECTTCCEEEEEEEEEESSCCCCEEEETTEECCSCEEEEEEEECSSSTTSEEEEEEEEEESSCCSTTCE
T ss_pred             CCeeccChhheEEecCCcEEEecccccCCCCcEEEEEECCEEcccCCCCceEEEEccccccceeeccEEEEEeccccCCc
Confidence            45556667778899999999999999 899999999999998876532  2333333221 22  458999999999999


Q ss_pred             eEEEEEEcCCCcce-EEEEEEEecCCCCCCCCCCCCeeecCCccccccCCCCcEEEEEEEeccCCC-ceeC
Q psy7036         186 KYKVTAKNELGESN-ATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLVGEPEP-TISW  254 (254)
Q Consensus       186 ~y~C~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~l~C~~~~~p~p-~~~W  254 (254)
                      .|+|.+.|..+... ..+.|.|..          +|.+...+....+.+|+ .+.|.|.+.|.|.| .++|
T Consensus        82 ~Y~C~~~~~~~~~~~~~~~l~V~~----------~p~~~~~~~~~~~~~g~-~~~l~C~~~g~p~p~~v~W  141 (195)
T 2c5d_C           82 QYQCLVFLGHQTFVSQPGYVGLEG----------LPYFLEEPEDRTVAANT-PFNLSCQAQGPPEPVDLLW  141 (195)
T ss_dssp             EEEEEEEETTEEEECCCEEEEECC----------SCEEEECCCCEEECTTC-CEEEEEEEECSSCCCEEEE
T ss_pred             EEEEEEEeCCCceecccEEEEEec----------CCeEEcCCCcEEEcCCC-EEEEEeECCCCCCCCEEEE
Confidence            99999999877543 336677753          57777777777888999 99999999999999 8998

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A

Probab=99.81  E-value=8e-19  Score=124.61  Aligned_cols=137  Identities=23%  Similarity=0.455  Sum_probs=105.0

Q ss_pred             CCCccccCCCeeeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCC-CCCceeEEE
Q psy7036         111 LAPTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVT-IEDAGKYKV  189 (254)
Q Consensus       111 ~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~G~y~C  189 (254)
                      .+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+..............   .+.|.|.++. .+|+|.|+|
T Consensus         5 ~~P~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~v~W~k~~~~~~~~~~~~~~~~~~~---~~~L~i~~v~~~~d~G~Y~C   81 (212)
T 2yd6_A            5 TPPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGS---GSVLRIQPLRTPRDEAIYEC   81 (212)
T ss_dssp             EEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCTTEEEEEEGGGT---EEEEEECSCCTTTTCEEEEE
T ss_pred             CCCeEEeCcceeEEecCCeEEEEEEEeeCCCCEEEEEECCcCCCCCceeEEEEcCCC---ceEEEEeccCCCCCCeEEEE
Confidence            345555556667788999999999999999999999999998865433222222111   1379999994 999999999


Q ss_pred             EEEcCCCcceEEEEEEEecCCCCCCCCCCCCeeecCCccccccCCCCcEEEEEEEeccCCCceeC
Q psy7036         190 TAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLVGEPEPTISW  254 (254)
Q Consensus       190 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~l~C~~~~~p~p~~~W  254 (254)
                      .+.|..|.....+.|.|......   ....|.+...+....+.+|+ .+.|.|.+.|.|.|.++|
T Consensus        82 ~a~n~~g~~~~~~~l~V~~~~~~---~~~~p~~~~~~~~~~~~~g~-~v~l~C~~~g~p~p~v~W  142 (212)
T 2yd6_A           82 VASNNVGEISVSTRLTVLREDQI---PRGFPTIDMGPQLKVVERTR-TATMLCAASGNPDPEITW  142 (212)
T ss_dssp             EEEETTEEEEEEEEEEEECGGGC---CTTCCEEEECCCCEEEETTS-CEEEEEEEECSSCCEEEE
T ss_pred             EEEcCCCcEEEEEEEEEeccCcc---CCCcceeecCCcceeEecCC-CEEEEEEecCCCCCeEEE
Confidence            99999988878888888753211   12346777777777788888 999999999999999998

>1ow0_A IG alpha-1 chain C region; IGA1, fcari, CD89, antibody, immunoglobulin-LIK immune system; HET: NAG FUL BMA GAL SIA FUC MAN NDG; 3.10A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2qej_A*

Probab=99.81  E-value=7.3e-21  Score=135.30  Aligned_cols=186  Identities=11%  Similarity=0.099  Sum_probs=114.2

Q ss_pred             CCe-eEeCCCceeecCCCeEEEEEEEeeCCC---CceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeE
Q psy7036           8 APS-FTQKPQLRQEDEGNRLIFECQLLCNPK---PDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGL   83 (254)
Q Consensus         8 ~p~-~~~~~~~~~v~~g~~v~l~C~~~~~~~---~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~   83 (254)
                      .|. +.+.|....+.+|++++|.|.+.+.+.   +.++| + +..+.............+.......|.|.+++..|+|.
T Consensus         3 ~p~v~~~~P~~~~v~~G~~v~L~C~~~g~~p~~~~~v~W-~-~~~~~~~~~~~~~~~~~g~~~~~~~L~I~~~~~~D~g~   80 (214)
T 1ow0_A            3 HPRLSLHRPALEDLLLGSEANLTCTLTGLRDASGVTFTW-T-PSSGKSAVQGPPERDLCGCYSVSSVLPGCAEPWNHGKT   80 (214)
T ss_dssp             CCCCEEECCCHHHHHHCSSCCCEEEETTCCSCCCCCCCB-S-SCSSCCCEECCCCCCSTTCCCEEEECTTTHHHHHHTCE
T ss_pred             CCEEEEECcChHHhccCCCcEEEEEEeeeECCCCeEEEE-c-CCCCCCcccCCceECCCCcEEEEEEEEEeHHHcCCCCe
Confidence            344 456688878899999999999987643   68999 4 43332110000000011112244579999999999999


Q ss_pred             EEEEEEcCCCceEEEEEEEEeccccCCCCCcccc-CCCeeeecCCCeEEEEEEEeeC-CC-CeEEEEECCEecccCCcc-
Q psy7036          84 YKVKAKNKMGEVAASINLNFSREQIDGLAPTFLK-KPSIRQEDDGKRLLFECRIQAD-PA-PTVIWSHSGVQVKEDKRH-  159 (254)
Q Consensus        84 Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~-~~~~~~~~~g~~~~l~C~~~~~-~~-~~~~W~~~~~~~~~~~~~-  159 (254)
                      |+|.+.+..+.......+.+.   ....+|.+.. .+....+..|+.+.|.|.+.++ |. +.+.|+|++..+...... 
T Consensus        81 Y~C~~~~~~~~~~~~~~i~~~---~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~  157 (214)
T 1ow0_A           81 FTCTAAYPESKTPLTATLSKS---GNTFRPEVHLLPPPSEELALNELVTLTCLARGFSPKDVLVRWLQGSQELPREKYLT  157 (214)
T ss_dssp             EEEEECCSSCSSCEEEEEECC---SSCCCCEEEEECCCTTTTTSSSEEEEEEEEEEESSSCCEEEEEETTEECCGGGSEE
T ss_pred             EEEEEecCCCCCceeEeeccC---CCCCCCEEEecCCCHHHhccCCceEEEEEEeeeECCCcEEEEEECCEECCCCceee
Confidence            999999877643333333320   1113444322 2222235578899999999985 43 489999999887644211 


Q ss_pred             -eEEEc---CCCC-ceeeEEEEccCCCCCceeEEEEEEcCCCcc
Q psy7036         160 -KFSID---KDGH-SYFASLEIIDVTIEDAGKYKVTAKNELGES  198 (254)
Q Consensus       160 -~~~~~---~~~~-~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~  198 (254)
                       .....   .++. ...+.|.|.....++.|.|+|.|.|.....
T Consensus       158 ~~~~~~~~~~dgt~~~~s~l~v~~~~~~~~~~ytC~v~n~~l~~  201 (214)
T 1ow0_A          158 WASRQEPSQGTTTFAVTSILRVAAEDWKKGDTFSCMVGHEALPL  201 (214)
T ss_dssp             CCCEECSCSSSCCEEEEEEEEEEHHHHHHTCCEEEEEECTTCTT
T ss_pred             cCCcccccCCCCcEEEEEEEEECHHHccCCCEEEEEEECCCCCC
Confidence             12233   3332 334556666555556889999999987554

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A

Probab=99.80  E-value=6.1e-19  Score=123.40  Aligned_cols=131  Identities=25%  Similarity=0.427  Sum_probs=103.5

Q ss_pred             CCccccCCCeeeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCC--cceEEEcCCCCceeeEEEEccCCCCCceeEEE
Q psy7036         112 APTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDK--RHKFSIDKDGHSYFASLEIIDVTIEDAGKYKV  189 (254)
Q Consensus       112 ~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C  189 (254)
                      +|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+....  ...+.....    .+.|.|.+++.+|+|.|+|
T Consensus         5 ~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~----~~~L~i~~~~~~d~G~Y~C   80 (194)
T 2a38_A            5 APTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDG----RAKLTIPAVTKANSGRYSL   80 (194)
T ss_dssp             EEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEESSSBCCTTTSTTCEEEEETT----EEEEEESSCCGGGCEEEEE
T ss_pred             CCeEEccCCceEEECCCEEEEEEEEEecCCCEEEEEECCEEcccccCCceEEEeCCC----EEEEEECCCCcccCEEEEE
Confidence            4445555566788899999999999999999999999998876543  223322222    2379999999999999999


Q ss_pred             EEEcCCCcceEEEEEEEecCCCCCCCCCCCCeeecCCccccccCCCCcEEEEEEEeccCCCceeC
Q psy7036         190 TAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLVGEPEPTISW  254 (254)
Q Consensus       190 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~l~C~~~~~p~p~~~W  254 (254)
                      .+.|..+.......+.|...       ..+|.+...+....+..|+ .+.|.|.+.|+|.|.++|
T Consensus        81 ~~~n~~~~~~~~~~l~v~~~-------~~~p~~~~~~~~~~~~~g~-~~~l~C~~~g~p~~~v~W  137 (194)
T 2a38_A           81 KATNGSGQATSTAELLVKAE-------TAPPNFVQRLQSMTVRQGS-QVRLQVRVTGIPTPVVKF  137 (194)
T ss_dssp             EEEETTEEEEEEEEEEEECC-------CEEEEEEECCCCEEECTTE-EEEEEEEEEEESCCEEEE
T ss_pred             EEEcCCceEeEEEEEEEccC-------CCCCEEEeCCccEEEcCCC-EEEEEEEEEEecCCeEEE
Confidence            99999888777777777631       2356677677777888899 999999999999999998

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.80  E-value=1.3e-18  Score=111.09  Aligned_cols=98  Identities=16%  Similarity=0.261  Sum_probs=83.4

Q ss_pred             CCCCCCeeEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeE
Q psy7036           4 AEDFAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGL   83 (254)
Q Consensus         4 ~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~   83 (254)
                      ....+|.|...+....+.+|++++|.|.+.|.|.+.+.|+|++..+....++.+...     .....|.|.+++..|+|.
T Consensus         3 s~~~pp~i~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~~-----~~~~~L~I~~v~~~D~G~   77 (114)
T 2cqv_A            3 SGSSGPQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENS-----ENGSKLTILAARQEHCGC   77 (114)
T ss_dssp             CCCCCCEESCCCCSEEEETTCCEEEEEEEESSSSCEEEEEESSSBCCCSSSEEEEEC-----SSEEEEEETTCCTTTCEE
T ss_pred             CCCCCCEEEeCCCCeEEeCCCeEEEEEEEEcCCCCEEEEEECCEECcCCCCEEEEEc-----CCEEEEEECCCChhcCEE
Confidence            456789999999999999999999999999999999999999998876665554422     123489999999999999


Q ss_pred             EEEEEEcCCCceEEEEEEEEecc
Q psy7036          84 YKVKAKNKMGEVAASINLNFSRE  106 (254)
Q Consensus        84 Y~C~~~~~~~~~~~~~~l~v~~~  106 (254)
                      |+|.+.|..|.....+.|.|...
T Consensus        78 Y~C~a~N~~g~~~~~~~l~V~~~  100 (114)
T 2cqv_A           78 YTLLVENKLGSRQAQVNLTVVDK  100 (114)
T ss_dssp             EEEEEECSSCEEECCEEEEEECS
T ss_pred             EEEEEEECCCcEEEEEEEEEECC
Confidence            99999999998888888988753

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4

Probab=99.80  E-value=2.2e-18  Score=119.30  Aligned_cols=128  Identities=21%  Similarity=0.454  Sum_probs=100.9

Q ss_pred             ccccCCCeeeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEc
Q psy7036         114 TFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKN  193 (254)
Q Consensus       114 ~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~  193 (254)
                      .+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+.......+....  ....+.|.|.+++.+|.|.|+|.+.|
T Consensus         4 ~~~~~p~~~~v~~G~~v~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~--~~~~~~L~i~~~~~~d~G~Y~C~~~~   81 (182)
T 1rhf_A            4 KLMGAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSE--QHWIGFLSLKSVERSDAGRYWCQVED   81 (182)
T ss_dssp             ---CCCEEEEEETTCCEEEEEEEESCSSCCEEEEETTEECCSSEEEEEEEET--TEEEEEEEESSCCGGGCEEEEEEESS
T ss_pred             EEEeCCcceEEeCCCcEEEEEEEeCCCCCeEEEEECCeecCCCCceEEEecC--CCceEEEEEeecCcccCeEEEEEEEc
Confidence            3445556678889999999999999899999999999988765443333322  22345899999999999999999999


Q ss_pred             CCCc-ceEEEEEEEecCCCCCCCCCCCCeeecCCccccccCCCCcEEEEEEEeccCCC-ceeC
Q psy7036         194 ELGE-SNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLVGEPEP-TISW  254 (254)
Q Consensus       194 ~~~~-~~~~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~l~C~~~~~p~p-~~~W  254 (254)
                      ..+. ....+.|.|..          +|.+...+....+.+|+ .+.|.|.+.|.|.| .++|
T Consensus        82 ~~~~~~~~~~~l~V~~----------~p~~~~~~~~~~~~~g~-~~~l~C~~~g~p~p~~v~W  133 (182)
T 1rhf_A           82 GGETEISQPVWLTVEG----------VPFFTVEPKDLAVPPNA-PFQLSCEAVGPPEPVTIVW  133 (182)
T ss_dssp             CTTCEECCCEEEEEEC----------SCEEEECCCCEEECTTC-CEEEEEEEECSSSCCEEEE
T ss_pred             CCCcEEEEEEEEEEec----------CCeEEecCcceEecCCC-EEEEEeEecCCCCCCEEEE
Confidence            8665 34567777764          67777777777888999 99999999999999 8998

>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*

Probab=99.80  E-value=2.8e-19  Score=125.65  Aligned_cols=120  Identities=18%  Similarity=0.253  Sum_probs=91.8

Q ss_pred             eeecCCCeEEEEEE---EeeCCCCeEEEEECCEecccC------C---------cceEEEcCCCCceeeEEEEccCCCCC
Q psy7036         122 RQEDDGKRLLFECR---IQADPAPTVIWSHSGVQVKED------K---------RHKFSIDKDGHSYFASLEIIDVTIED  183 (254)
Q Consensus       122 ~~~~~g~~~~l~C~---~~~~~~~~~~W~~~~~~~~~~------~---------~~~~~~~~~~~~~~~~l~i~~~~~~d  183 (254)
                      +.+..|+.+.|.|.   +.+.|.+.+.|+|++......      .         ...+.......  ...|.|.+++.+|
T Consensus         3 Vta~~Ge~v~L~C~~~~v~~~p~~~V~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~L~I~~v~~~D   80 (203)
T 4fa8_A            3 VTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSAN--TFFLVVTAANISH   80 (203)
T ss_dssp             CEEETTCCEEEEEECSSTTCSTTSEEEEEEEETTTEEEEEEEEETTEEEECGGGBTTEEEEEETT--EEEEEESSCCGGG
T ss_pred             eEEEcCCCEEEEeeeeccCCCCCcEEEEEEcCCCcceEEEEecCCceEEeeccccceEEEEEcCC--EEEEEEccCCHHH
Confidence            45678999999996   456788999999976432110      0         00011111111  2379999999999


Q ss_pred             ceeEEEEEEcCCCcceEEEEEEEecCCCCCCCCCCCCeeecCCccccccCCCCcEEEEEEEeccCCCceeC
Q psy7036         184 AGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLVGEPEPTISW  254 (254)
Q Consensus       184 ~G~y~C~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~l~C~~~~~p~p~~~W  254 (254)
                      +|.|+|.|.|..|.....+.|.|..          +|.+...+....+.+|+ .+.|.|.+.|.|.|.++|
T Consensus        81 ~G~Y~C~a~n~~g~~~~~~~l~V~~----------p~~~~~~~~~~~v~~g~-~~~l~C~~~G~P~P~v~W  140 (203)
T 4fa8_A           81 DGNYLCRMKLGETEVTKQEHLSVVK----------PLTLSVHSERSQFPDFS-VLTVTCTVNAFPHPHVQW  140 (203)
T ss_dssp             CEEEEEEEEETTEEEEEEEEEEEEE----------EEEEEEEEEECCSSCSC-CEEEEEEEEEESCCEEEE
T ss_pred             CeEEEEEEEcCCCcEEEEEEEEecC----------CceeeecceeEEEcCCC-EEEEEEEcCCCCCCEEEE
Confidence            9999999999999888888888874          56777777778888999 999999999999999999

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A

Probab=99.80  E-value=1.4e-18  Score=121.86  Aligned_cols=135  Identities=25%  Similarity=0.388  Sum_probs=101.4

Q ss_pred             CCCccccCCCeeeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCC-cceEEEcCCCCceeeEEEEccCCCCCceeEEE
Q psy7036         111 LAPTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDK-RHKFSIDKDGHSYFASLEIIDVTIEDAGKYKV  189 (254)
Q Consensus       111 ~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C  189 (254)
                      .+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+.... ...+....++   .+.|.|.+++.+|.|.|+|
T Consensus         3 ~~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~---~~~L~i~~~~~~d~G~Y~C   79 (197)
T 2j8h_A            3 MAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGG---YHQLIIASVTDDDATVYQV   79 (197)
T ss_dssp             CCCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEETTEECCCCSSSEEEEEETTT---EEEEEECSCCGGGCSEEEE
T ss_pred             CCCEEEEcCCccEEcCCCEEEEEEEEeecCCCEEEEEECCEECccCCCcEEEEEcCCC---EEEEEECcCCHHhCEEEEE
Confidence            45666666677788999999999999999999999999998886543 2222222222   2379999999999999999


Q ss_pred             EEEcCCCcceEEEEEEEecCCCCCCCCCCCCeeecCCccccccCCCCcEEEEEEEeccCCCceeC
Q psy7036         190 TAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLVGEPEPTISW  254 (254)
Q Consensus       190 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~l~C~~~~~p~p~~~W  254 (254)
                      .+.|..+.....+.|.|...+.     ...|.+...+....+.+|+ .+.|.|.+.|.|.|.+.|
T Consensus        80 ~~~n~~g~~~~~~~l~V~~~p~-----~~~~~~~~~~~~~~~~~g~-~~~l~C~~~g~p~p~i~W  138 (197)
T 2j8h_A           80 RATNQGGSVSGTASLEVEVPAK-----IHLPKTLEGMGAVHALRGE-VVSIKIPFSGKPDPVITW  138 (197)
T ss_dssp             EEEETTEEEEEEEEEEEEEEEE-----ECCSSCBTTBEEEEEETTC-CCEEEEEEEEESCCEEEE
T ss_pred             EEEECCCceeEEEEEEEcCCCc-----CCCCccccccCeEEEeCCC-EEEEEEEEEecCCCcEEE
Confidence            9999988877777777764211     1122223333445677888 999999999999999998

>3knb_A Titin; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*

Probab=99.79  E-value=2e-18  Score=107.14  Aligned_cols=95  Identities=29%  Similarity=0.596  Sum_probs=78.7

Q ss_pred             CCCccccCCCeeeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEE
Q psy7036         111 LAPTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVT  190 (254)
Q Consensus       111 ~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~  190 (254)
                      .||.+...+....+.+|+.+.|.|.+.|.|.|.+.|+|++..+......++.....+..  ++|.|.+++.+|+|.|+|.
T Consensus         4 ~PP~i~~~p~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~g~~i~~~~~~~~~~~~~~~~--~~L~I~~~~~~D~G~Y~C~   81 (100)
T 3knb_A            4 IPPKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDL--TTLIIMDVQKQDGGLYTLS   81 (100)
T ss_dssp             EEEEECCCCSEEEEETTSEEEEEEEEEEESCCEEEEEETTEECCTTGGGTEEEEECSSE--EEEEESSCCGGGCEEEEEE
T ss_pred             CCCEEEeCCCcEEEeCCCeEEEEEEEEEecCCEEEEEECceEeeeeccceeeeecccce--EEEEEcCCCccCCEEEEEE
Confidence            45666666777889999999999999999999999999999987665544444333322  3799999999999999999


Q ss_pred             EEcCCCcceEEEEEEEe
Q psy7036         191 AKNELGESNATISLNFD  207 (254)
Q Consensus       191 ~~~~~~~~~~~~~~~v~  207 (254)
                      |.|..|....++.|.|+
T Consensus        82 a~N~~G~~~~~~~l~V~   98 (100)
T 3knb_A           82 LGNEFGSDSATVNIHIR   98 (100)
T ss_dssp             EEETTEEEEEEEEEEEE
T ss_pred             EEECCCEEEEEEEEEEE
Confidence            99999999888888886

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}

Probab=99.79  E-value=4.9e-18  Score=118.43  Aligned_cols=121  Identities=17%  Similarity=0.373  Sum_probs=96.2

Q ss_pred             CCccccCCCeeeecC-CCeEEEEEEEeeCCC--CeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEE
Q psy7036         112 APTFLKKPSIRQEDD-GKRLLFECRIQADPA--PTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYK  188 (254)
Q Consensus       112 ~~~~~~~~~~~~~~~-g~~~~l~C~~~~~~~--~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~  188 (254)
                      +|.+...+ ...+.+ |+.+.|.|.+.+.+.  +.+.|++++..+.......         ....|.|.+++.+|+|.|+
T Consensus         3 ~P~i~~~~-~~~v~~~G~~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~~~~---------~~~~L~i~~~~~~d~G~Y~   72 (190)
T 2wv3_A            3 EPRIVTSE-EVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRKNA---------SNMEYRINKPRAEDSGEYH   72 (190)
T ss_dssp             CCEEEECC-CEECCCSSSCEEEEEEEEECSSCEEEEEEEETTEECTTCCBCC---------SEEEEEESSCCGGGCEEEE
T ss_pred             CCcccccc-eEEEccCCceEEEEEEeccCCCCceEEEEEECCEECcccceEe---------ccEEEEEecCCcccCEEEE
Confidence            34444433 344555 999999999998887  7899999998876443211         1138999999999999999


Q ss_pred             EEEEcCCCcceEEEEEEEecCCCCCCCCCCCCeeecCCccccccCCCCcEEEEEEEeccCCCceeC
Q psy7036         189 VTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLVGEPEPTISW  254 (254)
Q Consensus       189 C~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~l~C~~~~~p~p~~~W  254 (254)
                      |.+.|. +.....+.|.|..          +|.+...+....+.+|+ .+.|.|.+.|+|.|.+.|
T Consensus        73 C~~~n~-~~~~~~~~l~V~~----------~p~~~~~~~~~~~~~g~-~v~l~C~~~g~p~p~i~W  126 (190)
T 2wv3_A           73 CVYHFV-SAPKANATIEVKA----------APDITGHKRSENKNEGQ-DAMMYCKSVGYPHPEWMW  126 (190)
T ss_dssp             EEEEET-TEEEEEEEEEEEC----------CCEEEEECSEEEEETTS-CEEEEEEEECSSCCEEEE
T ss_pred             EEEEeC-CcccccEEEEEec----------CCcccccCCcceeeCCC-cEEEEEEeCccCCCceEE
Confidence            999998 7777888888874          57777667777788999 999999999999999998

>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus}

Probab=99.79  E-value=1.1e-18  Score=127.44  Aligned_cols=160  Identities=16%  Similarity=0.207  Sum_probs=85.7

Q ss_pred             cCCCCCeEEEEEEEcCCCceEEEEEEEEeccccCCCCCccccCCCeeeecCCCeEEEEEEEeeCC-----CCeEEEEECC
Q psy7036          76 VIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQADP-----APTVIWSHSG  150 (254)
Q Consensus        76 ~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~-----~~~~~W~~~~  150 (254)
                      ++..|+|.|+|.+.   |.......+.+.      .++.+...+....+.+|+.++|.|.+.+.+     .+.+.|+|+.
T Consensus        11 v~~~dsg~Y~C~a~---g~~~~~~~~~~~------~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~   81 (254)
T 2c1o_A           11 VRPGTSVKLSCKAS---GYSFTNYWMNWL------RELVMTQSPLTLSVTIGQPASISCKSSQSLLYSNGKTYLNWLLQR   81 (254)
T ss_dssp             ------------------------------------CCCEEEECSEEEECTTSCEEEEEEESSCCBCSSSCBCEEEEEEC
T ss_pred             ecCCccEEEEEcCc---hhhhhhhhhhee------eceeEEeCCceEEecCCCcEEEEeeccCcccccCCCCceEEEEeC
Confidence            67899999999998   333333333332      244455556678889999999999998887     3789999843


Q ss_pred             --Eec----------ccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcc-eEEEEEEEecCCCCCCCCC
Q psy7036         151 --VQV----------KEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGES-NATISLNFDSDDAPVPGEG  217 (254)
Q Consensus       151 --~~~----------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~-~~~~~~~v~~~~~~~~~~~  217 (254)
                        ..+          ......++.....+  ..+.|.|.+++.+|+|.|+|.+.|..+.. .....+.|...       .
T Consensus        82 ~g~~~~~~~~~~~~~~~~~~~r~~~~~~~--~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~l~V~~~-------~  152 (254)
T 2c1o_A           82 PGQSPKRLIYLVSKLDSGDPDRFTGSGSG--TDFTLKISRVEAEDLGIYYCVQGSHFPPTFGAGTKLELKRA-------D  152 (254)
T ss_dssp             TTSCCEEEEETTTEECTTCCTTEEEEEET--TEEEEEESSCCGGGCSEEEEEECSSSSCEEBCCEEEEECCC-------C
T ss_pred             CCCCceEEEEeccccCCCccceEEEecCC--CEEEEEECcCCcccCEEEEEEEEcCcceEecCCEEEEECCC-------C
Confidence              211          01111122221111  12379999999999999999999876532 22334555421       1


Q ss_pred             CCCeeecCCccccccCCCCcEEEEEEEecc-CC-CceeC
Q psy7036         218 TKPVFTERPVTKQSDDDLNDIVIECRLVGE-PE-PTISW  254 (254)
Q Consensus       218 ~~p~~~~~~~~~~~~~g~~~~~l~C~~~~~-p~-p~~~W  254 (254)
                      .+|.+...+.......|+ .+.|.|.+.|. |. +.++|
T Consensus       153 ~~P~v~~~~~~~~~~~g~-~v~l~C~~~g~~p~~~~v~W  190 (254)
T 2c1o_A          153 AAPTVSIFPPSSEQLTSG-GASVVCFLNNFYPKDINVKW  190 (254)
T ss_dssp             BCCEEEEECCCHHHHHTT-EEEEEEEEEEEBSSCCEEEE
T ss_pred             CCCeeEeecCChhhccCC-cEEEEEEEecccCCCcEEEE
Confidence            246665544433445688 99999999985 44 35888

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49}

Probab=99.78  E-value=7.1e-17  Score=114.12  Aligned_cols=193  Identities=14%  Similarity=0.209  Sum_probs=128.8

Q ss_pred             CCeeEeCCCceeecCCCeEEEEEEEee-CC---CCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeE
Q psy7036           8 APSFTQKPQLRQEDEGNRLIFECQLLC-NP---KPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGL   83 (254)
Q Consensus         8 ~p~~~~~~~~~~v~~g~~v~l~C~~~~-~~---~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~   83 (254)
                      ++.+...|....+..|+.++|+|.+.+ .|   ...++|+|||..+.....               .|.+..+...|+|.
T Consensus         2 ~~tVs~~P~~~~i~~GdsVTLTatVaGGkP~pspyTYqWyKDG~~IsGaT~---------------tLti~s~t~sdSG~   66 (304)
T 3shs_A            2 AFTVSIQSNKRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHENNTA---------------TLTVADATSENAGS   66 (304)
T ss_dssp             CEEEEEEESCSSBCTTCCEEEEEEEEESSSCCCCEEEEEEETTEECSCCSS---------------EEEESSCCGGGCEE
T ss_pred             ccEEEeCCCCccccCCCCEEEEEEecCCCCCCCCceEEEEECCccccCCcc---------------eEEeeeccccCCeE
Confidence            345666777788999999999999965 45   457999999988654222               68999999999999


Q ss_pred             EEEEEEcCCCceEEEEEEEEeccccCCCCCcc-ccCCCeeeecCCCeEEEEEEE--ee-CC-----CCeEEEEECCEecc
Q psy7036          84 YKVKAKNKMGEVAASINLNFSREQIDGLAPTF-LKKPSIRQEDDGKRLLFECRI--QA-DP-----APTVIWSHSGVQVK  154 (254)
Q Consensus        84 Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~-~~~~~~~~~~~g~~~~l~C~~--~~-~~-----~~~~~W~~~~~~~~  154 (254)
                      |+|.+.+..|....+..+.|...    ..+.+ ...+....+..+..+.|.+.+  .| .+     ...+.|++++..+.
T Consensus        67 YqCvVTDa~Gcs~tSs~VtVT~~----a~l~i~it~P~s~~vssg~sVtL~aTVt~SGGtppA~~~~yTYQWyKngt~Is  142 (304)
T 3shs_A           67 YKVTVQDTDTMTSVESEVFLMEE----AELIVNITEPQHFYVSSQTDVELHATVKFSGGKTPADNYELHYSWSKGEDVID  142 (304)
T ss_dssp             EEEEEEETTTCCEEECCCEEECB----CCEEEEESSCSEEEECSSCCEEEEEEEEETTSCCSSTTCCCEEEEEETTEEEE
T ss_pred             EEEEEEECCCCeeeeeeEEEecc----CceeEEecCCCceeccCCCeEEEEEEEeccCCCCcccCCCceeEEeeCCeEcc
Confidence            99999988776544444444321    11111 223444555667888898887  43 33     35899999998664


Q ss_pred             cCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCc--ceEEEEEEEecCCCCCCCCCCCCeeecCCcccccc
Q psy7036         155 EDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGE--SNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSD  232 (254)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~  232 (254)
                      ...               .|++......++|.|.|.+.|..+.  .+.+..|.+..          .+.-.......++.
T Consensus       143 gAq---------------~lT~sS~TateaG~YtV~VTn~~~~c~~s~~~~i~~~~----------~~v~~~~~~~~~~~  197 (304)
T 3shs_A          143 TTQ---------------DITIQEFTADKNGVYTVKVWGESEDSAASASTKIMLAT----------MNVDQDVVESKTVA  197 (304)
T ss_dssp             SSS---------------EEEECSCCGGGCEEEEEEEESSSGGGCEEEEEEEEECE----------EEEEECCCSEEEEE
T ss_pred             Ccc---------------ccceeeEEecCCeEEEEEEEcCCCCcccccceEEEEEc----------cccchhheEeehhh
Confidence            332               4677777888999999999998763  24444444432          11111112233556


Q ss_pred             CCCCcEEEEEEEe
Q psy7036         233 DDLNDIVIECRLV  245 (254)
Q Consensus       233 ~g~~~~~l~C~~~  245 (254)
                      .|+ .+.|...+.
T Consensus       198 ~~~-~~~~~~~~~  209 (304)
T 3shs_A          198 LGN-EISLNYVVS  209 (304)
T ss_dssp             TTS-CEEECCEEE
T ss_pred             cCc-EEEEEEEEe
Confidence            677 777766653

>3n9g_H FAB fragment of MAB CR4354, heavy chain; human neutralizing antibody, immun anti-WEST NIle virus; 1.43A {Homo sapiens} PDB: 3iyw_H 3qeh_A 3sqo_H 4hk0_A 4hk3_J 4hkx_A* 3u0t_D 3c08_H 3lmj_H 3lqa_H* 3c09_H* 4dn3_H 3pp4_H 3pp3_H 4hkb_J 2jb5_H* 2jb6_B* 2eh7_H 2eh8_H 3jwd_H* ...

Probab=99.78  E-value=1.4e-17  Score=119.67  Aligned_cols=188  Identities=11%  Similarity=0.160  Sum_probs=114.2

Q ss_pred             CCCceeecCCCeEEEEEEEeeC--CCCceEEEeCC-----EEe-eeC-----------CcceEEEeecCCcceEEEEEEe
Q psy7036          14 KPQLRQEDEGNRLIFECQLLCN--PKPDIVWFRGE-----TQL-SED-----------TRTVMKTTPIGTNKYLVALELD   74 (254)
Q Consensus        14 ~~~~~~v~~g~~v~l~C~~~~~--~~~~v~W~~~~-----~~~-~~~-----------~~~~~~~~~~~~~~~~~~l~i~   74 (254)
                      .|..+.+.+|++|+|.|.+.+.  ....+.|||..     ..+ ...           ...++....+. ......|.|.
T Consensus         6 ~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~rq~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~-~~~~~sL~I~   84 (230)
T 3n9g_H            6 QSGAEVRKPGASTKVSCKASGYTFTHYYMHWVRQAPGQGLEWMGIINPSGGSTTYAQKLQGRVTMTRDT-STSTVYMELS   84 (230)
T ss_dssp             ECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEET-TTTEEEEEEC
T ss_pred             ecCCEEEcCCCCEEEEEEeecceecCcEEEEEEECCCCCcEEEEEEecCCCceecCcccCCcEEEEecC-CCCEEEEEEC
Confidence            3446789999999999999752  35679999732     111 000           01122221111 2234579999


Q ss_pred             ccCCCCCeEEEEEEEcCC-----Cc---eEEEEEEEEeccccCCCCCccccCCCeeeecCCCeEEEEEEEeeC-C-CCeE
Q psy7036          75 DVIETDAGLYKVKAKNKM-----GE---VAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQAD-P-APTV  144 (254)
Q Consensus        75 ~~~~~d~G~Y~C~~~~~~-----~~---~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~-~~~~  144 (254)
                      +++.+|+|.|.|.+.+..     +.   ......|.|...  ...+|.+........+..|+.+.|.|.+.+. | .+.+
T Consensus        85 ~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~l~V~~~--~~~~P~v~~~~~~~~~~~g~~v~L~C~~~~~~P~~~~v  162 (230)
T 3n9g_H           85 SLRSEDTAVYYCARDWGSNYVWGSYPKYWGQGTLVTVSSA--STKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTV  162 (230)
T ss_dssp             SCCGGGCEEEEEEEECCCSSSTTCCEEEECCCEEEEECSS--CCBCCEEEEECCCCCCCTTCEEEEEEEEEEEBSSCCEE
T ss_pred             CCChhhCEEEEEEEccCCCCcccccccccCCCEEEEEEec--CCCCCEEEecCCCccccCCCCEEEEEEEEeEECCCEEE
Confidence            999999999999998753     11   112345666421  1133333322222334579999999999874 4 3468


Q ss_pred             EEEECCEecccCCc-ceEEEcCCC-CceeeEEEEccCCCCCceeEEEEEEcCCCcceEEEEEEEe
Q psy7036         145 IWSHSGVQVKEDKR-HKFSIDKDG-HSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFD  207 (254)
Q Consensus       145 ~W~~~~~~~~~~~~-~~~~~~~~~-~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~v~  207 (254)
                      .|  ++..+..... .......++ +...+.|.|.....+| |.|+|.|.|..+.......+.+.
T Consensus       163 ~W--~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~~~~~v~  224 (230)
T 3n9g_H          163 SW--NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKRVEPK  224 (230)
T ss_dssp             EE--GGGTBCTTEEECCCEECTTSCEEEEEEEEEESTTBTT-BCCEEEEEEGGGTEEEEEECCCC
T ss_pred             EE--CCcccCCCeEeCCceECCCCCEEEEEEEEECHHHcCC-CeEEEEEEECCCCcceEEEccCC
Confidence            99  5544432111 111122222 2344689999999899 99999999988776666665554

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}

Probab=99.78  E-value=2.6e-18  Score=119.97  Aligned_cols=127  Identities=27%  Similarity=0.525  Sum_probs=100.2

Q ss_pred             CCccccCCCeeeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEE
Q psy7036         112 APTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTA  191 (254)
Q Consensus       112 ~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~  191 (254)
                      +|.+...+....+..|+.+.|.|.+.+.|.+.+.|++++..+..... ++....++.    .|.|.+++.+|.|.|+|.+
T Consensus         7 ~P~i~~~~~~~~~~~G~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~-~~~~~~~~~----~L~i~~~~~~d~G~Y~C~~   81 (192)
T 2iep_A            7 APVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDT-RYSIRENGQ----LLTILSVEDSDDGIYCCTA   81 (192)
T ss_dssp             EEEESSCCCEEEEETTSCEEEECCEEEESCCEEEEEETTEECCTTCT-TEEEEGGGT----EEEESSCCGGGCEEEEEEE
T ss_pred             CceeecCccceeeeCCCcEEEEeeCCCCCCCeEEEEECCEEccccCc-cEEEcCCcc----EEEEcCCCcccCeEEEEEE
Confidence            44555556667788999999999999999999999999988764332 222222221    6999999999999999999


Q ss_pred             EcCCCcc-eEEEEEEEecCCCCCCCCCCCCeeecCCccccccCCCCcEEEEEEEeccCCCceeC
Q psy7036         192 KNELGES-NATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLVGEPEPTISW  254 (254)
Q Consensus       192 ~~~~~~~-~~~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~l~C~~~~~p~p~~~W  254 (254)
                      .|..+.. .....+.|..          +|.+...+....+.+|+ .+.|.|.+.|.|.|.++|
T Consensus        82 ~~~~~~~~~~~~~l~v~~----------~p~~~~~~~~~~~~~g~-~~~l~C~~~g~p~~~v~W  134 (192)
T 2iep_A           82 NNGVGGAVESCGALQVKM----------KPKITRPPINVKIIEGL-KAVLPCTTMGNPKPSVSW  134 (192)
T ss_dssp             ECSSSCCEEEEEEEEEEE----------EEEEEECCCCEEEETTS-CEEECCEEEEESCCEEEE
T ss_pred             EcCCCceeEeEEEEEEEe----------CCccccCCcceEEeCCC-cEEEEEEEeccCCceEEE
Confidence            9988773 5556676664          56677667777788899 999999999999999998

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens}

Probab=99.78  E-value=3.8e-18  Score=106.85  Aligned_cols=98  Identities=21%  Similarity=0.381  Sum_probs=83.2

Q ss_pred             CCCCCCCeeEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCe
Q psy7036           3 IAEDFAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAG   82 (254)
Q Consensus         3 ~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G   82 (254)
                      +....+|.|...+....+.+|+++.|.|.+.+.|.+.+.|+|++..+....++.+...     .....|.|.+++..|+|
T Consensus         3 l~~~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~~-----~~~~~L~i~~~~~~D~G   77 (103)
T 3qp3_A            3 FTLDHAPRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNT-----SGVLTLEILDCHTDDSG   77 (103)
T ss_dssp             TTTCEEEEEEECCCCEEEETTCCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEEE-----TTEEEEEECSCCGGGCE
T ss_pred             CCCCCCCEEEeCCcceEEeCCCeEEEEEEEEecCCCEEEEEECCEECCCCCCEEEEEC-----CCEEEEEEcCCCcccCE
Confidence            4456689999999999999999999999999999999999999999877666544322     12337999999999999


Q ss_pred             EEEEEEEcCCCceEEEEEEEEec
Q psy7036          83 LYKVKAKNKMGEVAASINLNFSR  105 (254)
Q Consensus        83 ~Y~C~~~~~~~~~~~~~~l~v~~  105 (254)
                      .|+|.+.|..|.....+.|.|..
T Consensus        78 ~Y~C~a~N~~G~~~~~~~l~V~~  100 (103)
T 3qp3_A           78 TYRAVCTNYKGEASDYATLDVTG  100 (103)
T ss_dssp             EEEEEEEETTEEEEEEEEEEEEC
T ss_pred             EEEEEEEeCCCcEEEEEEEEEEC
Confidence            99999999999988888888863

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}

Probab=99.78  E-value=6e-18  Score=118.55  Aligned_cols=129  Identities=23%  Similarity=0.416  Sum_probs=99.3

Q ss_pred             CCCccccCCCeeeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEE
Q psy7036         111 LAPTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVT  190 (254)
Q Consensus       111 ~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~  190 (254)
                      .+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+.......+.....    ...|.|.+++.+|+|.|+|.
T Consensus         6 ~~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~----~~~L~i~~~~~~d~G~Y~C~   81 (197)
T 3lcy_A            6 EAPGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGR----THTLTVMTEEQEDEGVYTCI   81 (197)
T ss_dssp             EEEEEEECCCCEEEETTSEEEEEEEEEEESCCEEEEEETTEEECCCSSEEEEESSS----EEEEEEECCSGGGCEEEEEE
T ss_pred             CCCcccccCCceEEeCCCcEEEEEEEecCCCCEEEEEECCEECCCCccEEEEeCCC----EEEEEEecCCccCCEEEEEE
Confidence            34455555667788899999999999999999999999999887655544433222    23799999999999999999


Q ss_pred             EEcCCCcceEEEEEEEecCCCCCCCCCCCCeeec---CCccccccCCCCcEEEEEEEeccCCCceeC
Q psy7036         191 AKNELGESNATISLNFDSDDAPVPGEGTKPVFTE---RPVTKQSDDDLNDIVIECRLVGEPEPTISW  254 (254)
Q Consensus       191 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~p~~~~---~~~~~~~~~g~~~~~l~C~~~~~p~p~~~W  254 (254)
                      +.|..+.......+.|..          +|.+..   .+....+..|+ .+.|.|.+.|+|.|.+.|
T Consensus        82 ~~n~~~~~~~~~~l~v~~----------~p~~~~~~~~~~~~~~~~g~-~~~l~C~~~~~p~p~v~W  137 (197)
T 3lcy_A           82 ATNEVGEVETSSKLLLQA----------TPQFHPGYPLKEKYYGAVGS-TLRLHVMYIGRPVPAMTW  137 (197)
T ss_dssp             EECSSCEEEEEEEEEEEE----------EEEECTTSCCCSEEEEETTS-CEEEEEEEEEESCCEEEE
T ss_pred             EECCCCceeEEEEEEEEc----------CCCCCCCccCCcceeecCCC-eEEEEEEEeeeeCCeeEE
Confidence            999988887777777764          222221   12334566788 999999999999999998

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}

Probab=99.77  E-value=5.2e-18  Score=127.05  Aligned_cols=156  Identities=18%  Similarity=0.303  Sum_probs=108.9

Q ss_pred             CCceeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEec-cCCCCCeEEEEEEEcCCC
Q psy7036          15 PQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDD-VIETDAGLYKVKAKNKMG   93 (254)
Q Consensus        15 ~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~-~~~~d~G~Y~C~~~~~~~   93 (254)
                      +....+.+|+.+.|.|.+.+.|.+.+.|++++..+....++.+....     ....|.|.+ ++..|+|.|+|.+.|..|
T Consensus       111 ~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~-----~~~~l~i~~~~~~~d~G~Y~C~a~N~~G  185 (305)
T 2nzi_A          111 MGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTR-----SFTSLVFPNGVERKDAGFYVVCAKNRFG  185 (305)
T ss_dssp             SCCEEEETTCCEEEEEEEEEESCCEEEEEESSSBCCSSSSCEEEECS-----SEEEEEETTCCCSTTCEEEEEEEEETTE
T ss_pred             cccEEecCCCEEEEEEEECCCCCCEEEEEECCEECCCCCcEEEEEcC-----CceEEEEecCCccCccEEEEEEEEeCCC
Confidence            34567889999999999999999999999999888766555443221     123799999 999999999999999999


Q ss_pred             ceEEEEEEEEeccccCCCCCccccCCCeeeecCCCeEEEEEE--------------EeeCCCCeEEEEECCEecccCCcc
Q psy7036          94 EVAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECR--------------IQADPAPTVIWSHSGVQVKEDKRH  159 (254)
Q Consensus        94 ~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~--------------~~~~~~~~~~W~~~~~~~~~~~~~  159 (254)
                      .....+.|.|...+   .+|...    ......+..+.|.|.              +...+.+...|.+.+..       
T Consensus       186 ~~~~~~~l~v~~~P---~~p~~~----~~~~~~~~~v~l~w~~p~~~g~~~i~~y~v~~~~~~~~~w~~~~~~-------  251 (305)
T 2nzi_A          186 IDQKTVELDVADVP---DPPRGV----KVSDVSRDSVNLTWTEPASDGGSKITNYIVEKCATTAERWLRVGQA-------  251 (305)
T ss_dssp             EEEEEEEEEEEBCC---CCCEEE----EEESCCSSCEEEEEECCSCCSBSCEEEEEEEEEETTSCCEEEEEEE-------
T ss_pred             ceeeEEEEEEecCC---CCCCCc----eeeeccCCEEEEEEcCCccCCCCceeEEEEEEecCCCCccEECccc-------
Confidence            98888888887422   122110    011123444555554              33333333444433221       


Q ss_pred             eEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcce
Q psy7036         160 KFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESN  199 (254)
Q Consensus       160 ~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~  199 (254)
                           ..     ..+.|.++...+.|.|+|.|.|..|...
T Consensus       252 -----~~-----~~~~i~~l~~~~~y~~~~~A~N~~G~~~  281 (305)
T 2nzi_A          252 -----RE-----TRYTVINLFGKTSYQFRVIAENKFGLSK  281 (305)
T ss_dssp             -----SS-----SEEEECSCCSSCEEEEEEEEEETTEECC
T ss_pred             -----cC-----ceEEecCCCCCCeEEEEEEEEeCCcccC
Confidence                 11     2799999999999999999999988654

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4

Probab=99.77  E-value=6.2e-18  Score=105.06  Aligned_cols=94  Identities=21%  Similarity=0.320  Sum_probs=79.8

Q ss_pred             CCCeeEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEE
Q psy7036           7 FAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKV   86 (254)
Q Consensus         7 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C   86 (254)
                      .+|.|...+....+.+|++++|.|.+.|.|.+.+.|++++..+....+........    ....|.|.+++..|+|.|+|
T Consensus         4 ~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~~~~~----~~~~L~i~~v~~~D~G~Y~C   79 (99)
T 1g1c_A            4 EAPKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPED----NVCELVIRDVTGEDSASIMV   79 (99)
T ss_dssp             EEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEEEET----TEEEEEECSCCGGGCEEEEE
T ss_pred             CCCceEecCcceEEcCCCcEEEEEEEEEeCCCEEEEEECCEECCCCCCEEEEEcCC----CEEEEEECCCCcCCCEEEEE
Confidence            47889999999999999999999999999999999999999988765544332221    23479999999999999999


Q ss_pred             EEEcCCCceEEEEEEEEe
Q psy7036          87 KAKNKMGEVAASINLNFS  104 (254)
Q Consensus        87 ~~~~~~~~~~~~~~l~v~  104 (254)
                      .+.|..|.....+.|.|.
T Consensus        80 ~a~N~~g~~~~~~~l~V~   97 (99)
T 1g1c_A           80 KAINIAGETSSHAFLLVQ   97 (99)
T ss_dssp             EEEETTEEEEEEEEEEEE
T ss_pred             EEEECCCcEEEEEEEEEe
Confidence            999999998888888875

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A

Probab=99.77  E-value=7.7e-18  Score=117.48  Aligned_cols=125  Identities=28%  Similarity=0.499  Sum_probs=96.2

Q ss_pred             ccCCCeeeecCCCeEEEEEEEeeCC-CCeEEEEE-CCEecccCC-cceEEEcCCCCceeeEEEEccCCCCCceeEEEEEE
Q psy7036         116 LKKPSIRQEDDGKRLLFECRIQADP-APTVIWSH-SGVQVKEDK-RHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAK  192 (254)
Q Consensus       116 ~~~~~~~~~~~g~~~~l~C~~~~~~-~~~~~W~~-~~~~~~~~~-~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~  192 (254)
                      ...+....+.+|+.+.|.|.+.+.+ .+.+.|++ ++..+.... ..........   ...|.|.+++.+|+|.|+|.+.
T Consensus         6 ~~~p~~~~v~~G~~v~l~C~~~~~~~~~~v~W~~~~g~~~~~~~~~~~~~~~~~~---~~~L~i~~~~~~d~G~Y~C~~~   82 (191)
T 1epf_A            6 DIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDD---SSTLTIYNANIDDAGIYKCVVT   82 (191)
T ss_dssp             EEESSSEEEETTCCEEEEEEECCCSCCCEEEEECTTSCEECCBSSSEEEEEEETT---EEEEEECSCCGGGCEEEEEEEE
T ss_pred             EecCCCcEEcCCCCEEEEEECCCCCCCceEEEEeCCCccccCCCCeEEEEECCCC---ceEEEEccCCcccCEEEEEEEE
Confidence            3344556788999999999998876 78999999 887766332 2222211111   2389999999999999999999


Q ss_pred             cCCC-cceEEEEEEEecCCCCCCCCCCCCeeecCCccccccCCCCcEEEEEEEeccCCCceeC
Q psy7036         193 NELG-ESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLVGEPEPTISW  254 (254)
Q Consensus       193 ~~~~-~~~~~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~l~C~~~~~p~p~~~W  254 (254)
                      |..+ .....+.|.|..          +|.+...+....+.+|+ .+.|.|.+.|+|.|.++|
T Consensus        83 ~~~~~~~~~~~~l~v~~----------~p~~~~~~~~~~~~~g~-~~~l~C~~~g~p~~~v~W  134 (191)
T 1epf_A           83 AEDGTQSEATVNVKIFQ----------KLMFKNAPTPQEFKEGE-DAVIVCDVVSSLPPTIIW  134 (191)
T ss_dssp             ETTTEEEEEEEEEEEEC----------CSEEEECCSSEECCTTS-CEEECCEEECSSCCEEEE
T ss_pred             cCCCcceEEEEEEEeec----------CceEecCCCcEeecCCC-eEEEEEEECCCCCCEEEE
Confidence            9874 456667777763          56777777777888999 999999999999999998

>1ypz_E T cell receptor delta, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.77  E-value=2e-17  Score=116.84  Aligned_cols=170  Identities=15%  Similarity=0.205  Sum_probs=103.1

Q ss_pred             eeEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeCC-----EEee-------eCCcceEEEeecCCcceEEEEEEeccC
Q psy7036          10 SFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGE-----TQLS-------EDTRTVMKTTPIGTNKYLVALELDDVI   77 (254)
Q Consensus        10 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~-----~~~~-------~~~~~~~~~~~~~~~~~~~~l~i~~~~   77 (254)
                      .+.+.|..+.+.+|++|+|.|.+.+.. ..+.|||.+     ..+.       ...++.+..  +........|.|.+++
T Consensus         3 ~v~q~p~~v~v~~G~~v~L~C~~~~~~-~~v~W~r~~~~~~~~~~~~~~~~~~~~~R~~~~~--~~~~~~~~~L~I~~v~   79 (207)
T 1ypz_E            3 QVEQSPSALSLHEGTDSALRCNFTTTM-RSVQWFRQNSRGSLISLFYLASGTKENGRLKSAF--DSKERRYSTLHIRDAQ   79 (207)
T ss_dssp             SEEESCSEEEEETTCCEEEEEEESSCC-SEEEEEEECTTSCCEEEEEESSEEEEETTEEEEE--CTTTCSEEEEEECSCC
T ss_pred             ccEECCCeEEEccCCcEEEEEEEeCCC-eEEEEEEeCCCCCeEEEEEEccCCccCCCEEEEe--ccCCCCEEEEEECCCC
Confidence            356778888999999999999997543 479999843     1221       122333222  1112334589999999


Q ss_pred             CCCCeEEEEEEEcCCC---------c--eEEEEEEEEeccccCCCCCccccCCCeeeecCCCeEEEEEEEeeC-CC-CeE
Q psy7036          78 ETDAGLYKVKAKNKMG---------E--VAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQAD-PA-PTV  144 (254)
Q Consensus        78 ~~d~G~Y~C~~~~~~~---------~--~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~-~~~  144 (254)
                      .+|+|.|.|.+.+..+         .  ......|.|........+|.       +.+..+ .+.|.|.+.+. |. +.+
T Consensus        80 ~~D~G~Y~C~~~~~~~~~p~~~~~~~~~~~~~t~L~V~~~~~~~~~P~-------v~~~~~-~~~l~C~~~g~~P~~~~v  151 (207)
T 1ypz_E           80 LEDSGTYFCAADTWHISEGYELGTDKLVFGQGTQVTVEPKSQPPAKPS-------VFIMKN-GTNVACLVKDFYPKEVTI  151 (207)
T ss_dssp             GGGCEEEEEEEECBCCCTTCCCCCCCCEECCCEEEEEECCCCCCCCCE-------EEEEEE-TTEEEEEEEEESSSCCEE
T ss_pred             HHHCEEEEEEEecCCcccccccccceeeecCccEEEEccCCCCCCCCe-------EEEeCC-CCeEEEEEeeEeCCCeEE
Confidence            9999999999987632         1  11245677753211111221       111111 26899999875 44 689


Q ss_pred             EEEECCEecccCCcceEEEcCCCCceeeEEEEccCC-CCCceeEEEEEEcCCCc
Q psy7036         145 IWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVT-IEDAGKYKVTAKNELGE  197 (254)
Q Consensus       145 ~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~G~y~C~~~~~~~~  197 (254)
                      .|+++ ..+..... ......++     .+.+.... .+|.|.|+|.+.|..+.
T Consensus       152 ~W~~~-~~l~~~~~-~~~~~~~g-----~y~~~~~~~~~~~~~ytC~v~~~~~~  198 (207)
T 1ypz_E          152 SLRSS-KKIVEFDP-AIVISPSG-----KYSAVKLGQYGDSNSVTCSVQHNSET  198 (207)
T ss_dssp             EEECS-SEEEECCC-EEEECTTS-----SEEEEECEEESSTTTCEEEEEETTEE
T ss_pred             EEecC-CcccCCcc-ceEEcCCC-----cEEEEEeecccCCCcEEEEEEECCcc
Confidence            99999 66543321 22223333     22332333 36789999999997653

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A

Probab=99.77  E-value=8.4e-17  Score=124.53  Aligned_cols=179  Identities=20%  Similarity=0.246  Sum_probs=120.6

Q ss_pred             CCCCCeeEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEE
Q psy7036           5 EDFAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLY   84 (254)
Q Consensus         5 ~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y   84 (254)
                      +..+|.|...+....+.+|+.+.|.|.+.|.|.+.++|++++..+......++.....+.   ...|.|.+++..|+|.|
T Consensus        97 V~~~P~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~---~~~L~i~~~~~~d~G~Y  173 (389)
T 2jll_A           97 IEYAPKFISNQTIYYSWEGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGR---KMILEIAPTSDNDFGRY  173 (389)
T ss_dssp             EEEEEEECCSCCEEEECTTCCEEEEECEEEESCCEEEEEETTEESSCTTCTTEEEEECSS---CEEEEECCCSTTSSEEE
T ss_pred             EEeCCEEecCcceEEeccCCEEEEEEEEEecCCCeEEEEECCccCCcccCceEEEeccCC---EEEEEECCCChhhCEEE
Confidence            345677776666667899999999999999999999999999998765433333322222   23799999999999999


Q ss_pred             EEEEEcCCCceEEEEEEEEeccccCCCCCccccCCCeeeecCCCeEEEEEEEeeC----CCC--eEEEEECCEecccCCc
Q psy7036          85 KVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQAD----PAP--TVIWSHSGVQVKEDKR  158 (254)
Q Consensus        85 ~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~----~~~--~~~W~~~~~~~~~~~~  158 (254)
                      +|.+.|..|.......+.+...+   .+|..    .......+..+.|.|.....    +..  .+.|.+++...     
T Consensus       174 ~C~a~N~~G~~~~~~~l~v~~~P---~~P~~----~~~~~~~~~~~~l~w~~p~~~~g~pi~~y~v~~~~~~~~~-----  241 (389)
T 2jll_A          174 NCTATNHIGTRFQEYILALADVP---SSPYG----VKIIELSQTTAKVSFNKPDSHGGVPIHHYQVDVKEVASEI-----  241 (389)
T ss_dssp             EEEEEETTEEEEEEEEEEECCCC---CCCEE----EEEEEECSSCEEEEEECCSCCTTSCEEEEEEEEEETTCSC-----
T ss_pred             EEEEEcCCCcEEEEEEEEecCCC---CCCcc----eEEeeccCCEEEEEEeCCCCCCCcceEEEEEEEEECCCcc-----
Confidence            99999999988777777764211   11110    11122235678888874221    221  35677665321     


Q ss_pred             ceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcceEE
Q psy7036         159 HKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNAT  201 (254)
Q Consensus       159 ~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~  201 (254)
                      .........   ...+.|.++...+.+.|+|.|.|..|....+
T Consensus       242 ~~~~~~~~~---~~~~~i~~l~~~~~y~~~v~A~N~~G~~~~s  281 (389)
T 2jll_A          242 WKIVRSHGV---QTMVVLNNLEPNTTYEIRVAAVNGKGQGDYS  281 (389)
T ss_dssp             CEEEECSTT---CSEEEECSCCTTCEEEEEEEEEESSCBCCCC
T ss_pred             cEEeeccCC---cceEEECCccCCCEEEEEEEEEcCCccCCCC
Confidence            111111111   1279999999999999999999998865433

>3mlr_H Human monoclonal anti-HIV-1 GP120 V3 antibody 255 heavy chain; human monoclonal antibody, FAB, third variable antibody-antigen interaction; 1.80A {Homo sapiens} PDB: 3mls_H 3mlt_H 3mlu_H 3mlv_H

Probab=99.77  E-value=1.6e-17  Score=119.03  Aligned_cols=181  Identities=12%  Similarity=0.164  Sum_probs=108.9

Q ss_pred             CCceeecCCCeEEEEEEEeeC--CCCceEEEeCC-----EEe---ee-----------CCcceEEEeecCCcceEEEEEE
Q psy7036          15 PQLRQEDEGNRLIFECQLLCN--PKPDIVWFRGE-----TQL---SE-----------DTRTVMKTTPIGTNKYLVALEL   73 (254)
Q Consensus        15 ~~~~~v~~g~~v~l~C~~~~~--~~~~v~W~~~~-----~~~---~~-----------~~~~~~~~~~~~~~~~~~~l~i   73 (254)
                      +..+.+.+|++|+|.|.+.+.  ....+.|||..     ..+   ..           ..++.+....   .....+|.|
T Consensus         7 ~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~rq~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~---~~~~~sL~I   83 (226)
T 3mlr_H            7 SGGEVKQPGQSLKISCKSSGYNFLDSWIGWVRQIPGKGLEWIGIIYPDDSDAHYSPSFEGQVTMSVDK---SISTAYLQW   83 (226)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTBTTBEEEEEG---GGTEEEEEE
T ss_pred             CCCEEEecCCCEEEEEEecCccccCCEEEEEEECCCCCcEEEEEEecCCCccccCcccCCcEEEEecC---CCCEEEEEE
Confidence            346789999999999999653  35679999832     111   00           1222222211   123457999


Q ss_pred             eccCCCCCeEEEEEEEcCCC-------c--eEEEEEEEEeccccCCCCCccccCCCeeeecCCCeEEEEEEEeeC-C-CC
Q psy7036          74 DDVIETDAGLYKVKAKNKMG-------E--VAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQAD-P-AP  142 (254)
Q Consensus        74 ~~~~~~d~G~Y~C~~~~~~~-------~--~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~-~~  142 (254)
                      .+++.+|+|.|.|.+.+..+       .  ......|.|...  ...+|.+........+..|..+.|.|.+.+. | .+
T Consensus        84 ~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~t~l~V~~~--~~~~P~i~~~~~~~~~~~g~~~~l~C~~~~~~p~~~  161 (226)
T 3mlr_H           84 TTLQASDTGKYFCTRLYLFEGAQSSNAFDLWGQGTMILVSSG--TTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPV  161 (226)
T ss_dssp             SSCCGGGCEEEEEEEEEEEESSSEEEEEEEECCCEEEEECCC--CCBCCEEEEEEEEECSTTSSEEEEEEEEEEEBSSCC
T ss_pred             CCCCcccCEEEEEeEccCCCcccccchhhhhCCccEEeeccC--CCCCCcEEEecCcccccCCCCEEEEEEEEEEECCCe
Confidence            99999999999999976421       0  112335565421  1123333322222334578999999999874 4 35


Q ss_pred             eEEEEECCEecccCC-cceEEEcCCC-CceeeEEEEccCCCCCceeEEEEEEcCCCcceEEEE
Q psy7036         143 TVIWSHSGVQVKEDK-RHKFSIDKDG-HSYFASLEIIDVTIEDAGKYKVTAKNELGESNATIS  203 (254)
Q Consensus       143 ~~~W~~~~~~~~~~~-~~~~~~~~~~-~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~  203 (254)
                      .+.|  ++..+.... ........++ +...+.|.|.....+| |.|+|.+.|..+.......
T Consensus       162 ~v~W--~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~~~  221 (226)
T 3mlr_H          162 TVSW--NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKK  221 (226)
T ss_dssp             EEEE--GGGTCCTTEEECCCEECTTSCEEEEEEEEEEGGGTTT-CCCEEEEEEGGGTEEEEEE
T ss_pred             EEEE--CCccccCCeEeCCcEECCCCCEEEEEEEEECHhHcCC-CeEEEEEEECCCCcCeEEE
Confidence            7999  443332111 0111122222 3345689999988888 9999999998776554443

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=99.76  E-value=5.6e-18  Score=105.45  Aligned_cols=96  Identities=27%  Similarity=0.385  Sum_probs=80.5

Q ss_pred             CCCCeeEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEE
Q psy7036           6 DFAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYK   85 (254)
Q Consensus         6 ~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~   85 (254)
                      ..+|.|...|....+.+|++++|.|.+.|.|.+.+.|++++..+.............    ....|.|.+++..|+|.|+
T Consensus         3 ~~~P~~~~~p~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~----~~~~L~i~~v~~~D~G~Y~   78 (100)
T 2kdg_A            3 MGPPRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEK----GLHSLIFEVVRASDAGAYA   78 (100)
T ss_dssp             CEEEECCCCCCCEEEETTCCEEEEEECEEESCCEEEEEETTEEECCCSSSCEEEETT----TEEEEEESSCCGGGCEEEE
T ss_pred             CCCCeEEeCCCCEEecCCCEEEEEEEEEeeCCCEEEEEECCEECcCCCcEEEEEcCC----CeEEEEECCCCcccCEEEE
Confidence            357888888989999999999999999999999999999999987765544433222    2247999999999999999


Q ss_pred             EEEEcCCCceEEEEEEEEec
Q psy7036          86 VKAKNKMGEVAASINLNFSR  105 (254)
Q Consensus        86 C~~~~~~~~~~~~~~l~v~~  105 (254)
                      |.+.|..|.....+.|.|..
T Consensus        79 C~a~n~~g~~~~~~~l~V~~   98 (100)
T 2kdg_A           79 CVAKNRAGEATFTVQLDVLA   98 (100)
T ss_dssp             EEEEETTEEEEEEEEEEEEC
T ss_pred             EEEEcCCCeEEEEEEEEEEe
Confidence            99999999988888888863

>3knb_B Obscurin-like protein 1; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2wp3_O* 2wwm_C 2wwk_O

Probab=99.76  E-value=4.8e-18  Score=106.68  Aligned_cols=94  Identities=27%  Similarity=0.459  Sum_probs=77.6

Q ss_pred             CCCccccCCCeeeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEE
Q psy7036         111 LAPTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVT  190 (254)
Q Consensus       111 ~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~  190 (254)
                      .||.+...+....+.+|+.+.|.|.+.|.|.+.+.|+|++..+....+..+.....    ...|.|.+++.+|+|.|+|.
T Consensus        12 ~pP~f~~~p~~~~v~~G~~~~l~C~~~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~----~~~L~I~~v~~~D~G~Y~C~   87 (107)
T 3knb_B           12 SPPCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGA----EHGLLLTAALPTDAGVYVCR   87 (107)
T ss_dssp             EEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEECCEETT----EEEEEESSCCGGGCEEEEEE
T ss_pred             CCCEEEeCCCcEEEeCCCcEEEEEEEEEecCCEEEEEECcccccceeeEEEeecCc----eEEEEEecCChhhCEEEEEE
Confidence            45666666677888999999999999999999999999999987665544433222    23799999999999999999


Q ss_pred             EEcCCCcceEEEEEEEec
Q psy7036         191 AKNELGESNATISLNFDS  208 (254)
Q Consensus       191 ~~~~~~~~~~~~~~~v~~  208 (254)
                      |.|..|....++.|.|..
T Consensus        88 a~N~~G~~~~~~~l~V~~  105 (107)
T 3knb_B           88 ARNAAGEAYAAAAVTVLE  105 (107)
T ss_dssp             EEETTEEEEEEEEEEEEC
T ss_pred             EEECCCEEEEEEEEEEEc
Confidence            999999988888888864

>3sob_H Antibody heavy chain, low-density lipoprotein receptor-related protein; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_B 3uls_H 3ulu_D* 3ulv_D*

Probab=99.76  E-value=5.5e-17  Score=118.46  Aligned_cols=187  Identities=11%  Similarity=0.170  Sum_probs=110.1

Q ss_pred             CCceeecCCCeEEEEEEEeeC--CCCceEEEeCC-----EEe-e-----------eCCcceEEEeecCCcceEEEEEEec
Q psy7036          15 PQLRQEDEGNRLIFECQLLCN--PKPDIVWFRGE-----TQL-S-----------EDTRTVMKTTPIGTNKYLVALELDD   75 (254)
Q Consensus        15 ~~~~~v~~g~~v~l~C~~~~~--~~~~v~W~~~~-----~~~-~-----------~~~~~~~~~~~~~~~~~~~~l~i~~   75 (254)
                      +....+.+|++|+|.|.+.+.  ....+.|||..     ..+ .           .....++....+. .....+|.|.+
T Consensus        30 ~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~-~~~~~sL~I~~  108 (256)
T 3sob_H           30 SGGGLVQPGGSLRLSCAASGFTFTNSYIHWVRQAPGKGLEWVGWITPYGGYTNYADSVKGRFTISADT-SKNTAYLQMNS  108 (256)
T ss_dssp             ECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCCEEEEEEETTTTEEEECTTTTTTEEEEEEG-GGTEEEEEECS
T ss_pred             cCcEEEcCCCCEEEEEEeeccccCCCEEEEEEECCCCCcEEEEEEecCCCceecCCCCCCcEEEEEeC-CCCEEEEEECC
Confidence            345679999999999999753  34679999732     111 0           0011122221111 22345799999


Q ss_pred             cCCCCCeEEEEEEEcCCC-----------ceEEEEEEEEeccccCCCCCccccCCCeeeecCCCeEEEEEEEeeC-C-CC
Q psy7036          76 VIETDAGLYKVKAKNKMG-----------EVAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQAD-P-AP  142 (254)
Q Consensus        76 ~~~~d~G~Y~C~~~~~~~-----------~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~-~~  142 (254)
                      ++.+|+|.|.|.+.+..+           .......|.|...  ...+|.+........+..|+.++|.|.+.+. | ..
T Consensus       109 v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~--~~~~P~i~~~~~~~~~~~g~~v~L~C~~~~~~p~~~  186 (256)
T 3sob_H          109 LRAEDTAVYYCARGSGHVNAVKNYGYVMDYWGQGTLVTVSSA--STKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPV  186 (256)
T ss_dssp             CCGGGCEEEEEEEESSCTTCSSCCTTSEEEECCCEEEEECSS--CCBCCEEEEECCC-----TTEEEEEEEEEEEBSSCC
T ss_pred             CCcccCEEEEEEEecCCCccccccccceeEECCCEEEEEecC--CCCCCEEEEECCCcccccCCcEEEEEEEEEEECCCe
Confidence            999999999999986431           1122345666421  1133433322222335579999999999874 4 34


Q ss_pred             eEEEEECCEecccCCc-ceEEEcCCC-CceeeEEEEccCCCCCceeEEEEEEcCCCcceEEEEEEEe
Q psy7036         143 TVIWSHSGVQVKEDKR-HKFSIDKDG-HSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFD  207 (254)
Q Consensus       143 ~~~W~~~~~~~~~~~~-~~~~~~~~~-~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~v~  207 (254)
                      .+.|  ++..+..... .......++ +...+.|.|.....+| |.|+|.+.|..+.......+.+.
T Consensus       187 ~v~W--~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d-~~ytC~v~~~~~~~~~~~~~~~~  250 (256)
T 3sob_H          187 TVSW--NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKVEPK  250 (256)
T ss_dssp             EEEE--GGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGTTT-CCCEEEEEEGGGTEEEEEECCCC
T ss_pred             EEEE--CCcccCCCeEeCCceeCCCCCEEEEEEEEECHHHcCC-ceEEEEEEeCCCCcceEEEeccc
Confidence            6999  5544332111 111122222 2344679999988889 99999999988776666555443

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens}

Probab=99.75  E-value=1.6e-17  Score=103.21  Aligned_cols=95  Identities=19%  Similarity=0.302  Sum_probs=80.7

Q ss_pred             CCCCCeeEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEE
Q psy7036           5 EDFAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLY   84 (254)
Q Consensus         5 ~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y   84 (254)
                      +..+|.|...+....+.+|+++.|.|.+.+.|.+.+.|++++..+....++.+...  +   ....|.|.+++..|+|.|
T Consensus         3 ~~~~P~i~~~~~~~~v~~G~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~--~---~~~~L~i~~~~~~d~G~Y   77 (99)
T 3puc_A            3 ISSKPVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSED--K---GGFFLEIHKTDTSDSGLY   77 (99)
T ss_dssp             CCEEEEEEECCCCEEEESSSCEEEEEEEEEESCCEEEEEETTEECCSSSSEEEEEE--T---TEEEEEECSCCGGGCEEE
T ss_pred             CCCCCEEEecCccEEEeCCCcEEEEEEEEecCCCEEEEEECCEECcCCCCEEEEEe--C---CEEEEEECCCCcccCEEE
Confidence            45678999999999999999999999999999999999999999877666554322  1   223799999999999999


Q ss_pred             EEEEEcCCCceEEEEEEEEe
Q psy7036          85 KVKAKNKMGEVAASINLNFS  104 (254)
Q Consensus        85 ~C~~~~~~~~~~~~~~l~v~  104 (254)
                      +|.+.|..|.....+.|.|.
T Consensus        78 ~C~a~n~~g~~~~~~~l~V~   97 (99)
T 3puc_A           78 TCTVKNSAGSVSSSCKLTIK   97 (99)
T ss_dssp             EEEEEETTEEEEEEEEEEEE
T ss_pred             EEEEEeCCCcEeEEEEEEEE
Confidence            99999999988888888774

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}

Probab=99.75  E-value=2e-17  Score=115.09  Aligned_cols=126  Identities=24%  Similarity=0.472  Sum_probs=91.1

Q ss_pred             CccccCCCeeeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEE
Q psy7036         113 PTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAK  192 (254)
Q Consensus       113 ~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~  192 (254)
                      |.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+......++....++     .|.|.+++.+|.|.|+|.+.
T Consensus         3 ~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~-----~L~i~~~~~~d~G~Y~C~~~   77 (189)
T 2v5t_A            3 LTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANN-----NLQILNINKSDEGIYRCEGR   77 (189)
T ss_dssp             CEEEECCSSEEEETTSCEEECCEEECSSCCEEEEEC-----CBCCCTTEEECTTS-----CEEETTCCGGGCEEEEEEEE
T ss_pred             ceeeccCCCEEEeCCCcEEEEEEEcCCCCCEEEEEECCccceeccCCeEEEecCC-----CEEEeeCCHhHCcEEEEEEE
Confidence            3444555667788999999999999999999999999988765444445444444     69999999999999999999


Q ss_pred             cCCCcce--EEEEEEEecCCCCCCCCCCCCeeecCCc--cccccCCCCcEEEEEEEeccCCCceeC
Q psy7036         193 NELGESN--ATISLNFDSDDAPVPGEGTKPVFTERPV--TKQSDDDLNDIVIECRLVGEPEPTISW  254 (254)
Q Consensus       193 ~~~~~~~--~~~~~~v~~~~~~~~~~~~~p~~~~~~~--~~~~~~g~~~~~l~C~~~~~p~p~~~W  254 (254)
                      +..+...  ..+.+.+..          +|.+...+.  ...+.+|+ .+.|.|.+.|.|.|.+.|
T Consensus        78 ~~~~~~~~~~~~~l~v~~----------~p~~~~~~~~~~~~~~~g~-~v~l~C~~~g~p~~~v~W  132 (189)
T 2v5t_A           78 VEARGEIDFRDIIVIVNV----------PPAISMPQKSFNATAERGE-EMTFSCRASGSPEPAISW  132 (189)
T ss_dssp             ETTTTEEEEEEEEEEEEE----------EEEEECSCCEEEEETTSCC-CEEEECEEEEESCCEEEE
T ss_pred             EcCCCceEEEEEEEEecC----------CCCcccccccccccccCCC-cEEEEEEEccCCCCeEEE
Confidence            9875433  344555543          344443332  44667888 999999999999999998

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens}

Probab=99.75  E-value=2.3e-17  Score=102.42  Aligned_cols=94  Identities=24%  Similarity=0.399  Sum_probs=78.1

Q ss_pred             CCCeeEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEE
Q psy7036           7 FAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKV   86 (254)
Q Consensus         7 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C   86 (254)
                      .+|.|...+....+.+|++++|.|.+.+.|.+.+.|++++..+........ ...   ......|.|.+++..|+|.|+|
T Consensus         4 ~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~~~~~~~~~~~~~-~~~---~~~~~~L~i~~~~~~D~G~Y~C   79 (99)
T 1u2h_A            4 APPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFA-EEA---EGGLCRLRILAAERGDAGFYTC   79 (99)
T ss_dssp             EEEEEEECCCCEEEETTCCEEEEEEEEEESCCEEEEEETTEECCCBTTEEE-EEC---GGGEEEEEESSCCGGGCEEEEE
T ss_pred             CCCEEEEcCCceEecCCCEEEEEEEEEEcCCCEEEEEECCEECCCCCCEEE-EEC---CCCEEEEEEccCCcCCCEEEEE
Confidence            478999999999999999999999999999999999999998875543222 121   1223479999999999999999


Q ss_pred             EEEcCCCceEEEEEEEEe
Q psy7036          87 KAKNKMGEVAASINLNFS  104 (254)
Q Consensus        87 ~~~~~~~~~~~~~~l~v~  104 (254)
                      .+.|..|.....+.|.|.
T Consensus        80 ~a~N~~g~~~~~~~l~V~   97 (99)
T 1u2h_A           80 KAVNEYGARQCEARLEVR   97 (99)
T ss_dssp             EEEETTEEEEEEEEEEEE
T ss_pred             EEEECCCceeEEEEEEEE
Confidence            999999998888888875

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X

Probab=99.74  E-value=6.3e-17  Score=101.02  Aligned_cols=97  Identities=26%  Similarity=0.404  Sum_probs=75.4

Q ss_pred             CCCCeeEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEE
Q psy7036           6 DFAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYK   85 (254)
Q Consensus         6 ~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~   85 (254)
                      .++|.+.....   ...|+.+.|.|.+.|.|.|.++|+|+|..+....+........+.......|.|.+++..|+|.|+
T Consensus         2 ~~pP~i~~~~~---~~~~~~~~~~c~v~G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~   78 (103)
T 1wwb_X            2 HFAPTITFLES---PTSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYT   78 (103)
T ss_dssp             CCCCCCCCCCC---CCCCCEEEEEEEEECSSCCEEEEEETTEEECCCSSEEEEEEEECSSEEEEEEEEESCCGGGCEEEE
T ss_pred             CCCCEEEeccC---ceECcEEEEEEEEEEeCCCEEEEEECCEECCCCCcEeEEEEecCCcEEEEEEEECCCCcccCEEEE
Confidence            45777643222   346889999999999999999999999998876543333222233334557999999999999999


Q ss_pred             EEEEcCCCceEEEEEEEEec
Q psy7036          86 VKAKNKMGEVAASINLNFSR  105 (254)
Q Consensus        86 C~~~~~~~~~~~~~~l~v~~  105 (254)
                      |.+.|..|.....+.|.|..
T Consensus        79 C~A~N~~G~~~~~~~l~V~~   98 (103)
T 1wwb_X           79 LIAKNEYGKDEKQISAHFMG   98 (103)
T ss_dssp             EEEECSSCEEEEEEEECCSC
T ss_pred             EEEEeCCCcEeEEEEEEECC
Confidence            99999999999999888863

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=99.74  E-value=3.3e-17  Score=104.64  Aligned_cols=97  Identities=30%  Similarity=0.473  Sum_probs=80.5

Q ss_pred             CCCCCeeEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeC-CcceEEEeecCCcceEEEEEEeccCCCCCeE
Q psy7036           5 EDFAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSED-TRTVMKTTPIGTNKYLVALELDDVIETDAGL   83 (254)
Q Consensus         5 ~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~   83 (254)
                      ...+|.|+..|....+.+|++++|.|.+.|.|.+.+.|++++..+... .++.+..  .+  .....|.|.+++..|+|.
T Consensus        12 ~~~~p~f~~~p~~~~v~~G~~v~L~C~~~g~p~p~v~W~k~~~~~~~~~~~~~~~~--~~--~~~~~L~I~~v~~~D~G~   87 (116)
T 2kkq_A           12 HKRAPMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQ--DN--TGRVTLLIKDVNKKDAGW   87 (116)
T ss_dssp             CCBCCCBSSCCCCEEEETTEEEEEEEEBCCBSCCEEEEEETTEECCCCBTTEEEEE--CT--TCEEEEEEEEECGGGCEE
T ss_pred             CCCCCeEEeCCCcEEEeCCCcEEEEEEEeccCCCEEEEEECCEECcCCCCeEEEEe--CC--CCeEEEEECCCCcccCEE
Confidence            345889999999999999999999999999999999999999988753 3333322  11  134479999999999999


Q ss_pred             EEEEEEcCCCceEEEEEEEEec
Q psy7036          84 YKVKAKNKMGEVAASINLNFSR  105 (254)
Q Consensus        84 Y~C~~~~~~~~~~~~~~l~v~~  105 (254)
                      |+|.+.|..|.....+.|.|..
T Consensus        88 Y~C~a~N~~G~~~~~~~l~V~~  109 (116)
T 2kkq_A           88 YTVSAVNEAGVTTCNTRLDVTA  109 (116)
T ss_dssp             EEEEEEETTEEEEEEEEEEEEC
T ss_pred             EEEEEEcCCCeEEEEEEEEEeC
Confidence            9999999999988888888874

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C

Probab=99.74  E-value=1.1e-17  Score=120.17  Aligned_cols=124  Identities=23%  Similarity=0.456  Sum_probs=95.5

Q ss_pred             CeeeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcceE-EEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcc
Q psy7036         120 SIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKF-SIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGES  198 (254)
Q Consensus       120 ~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~  198 (254)
                      ....+.+|+.+.|.|.+.+.|.+.+.|++++..+........ ......    ..|.|.+++.+|+|.|+|.+.|..+..
T Consensus        27 ~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~----~~L~i~~~~~~d~G~Y~C~~~n~~~~~  102 (231)
T 3ojm_B           27 RLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQH----WSLIMESVVPSDKGNYTCVVENEYGSI  102 (231)
T ss_dssp             SCEEEETTSCEEEECCEEEESCCEEEEEETTEECCGGGSTTCCEEEGGG----TEEEECSCCGGGCEEEEEEEEETTEEE
T ss_pred             eeEEEccCCCEEEEEecccCCCCeEEEEECCccccccccccceeeecCc----ceEEEecCCcccCEEEEEEEecccCcc
Confidence            556788999999999999999999999999998764433211 111111    279999999999999999999998888


Q ss_pred             eEEEEEEEecCCCCCCCCCCCCeeec-CCccccccCCCCcEEEEEEEeccCCCceeC
Q psy7036         199 NATISLNFDSDDAPVPGEGTKPVFTE-RPVTKQSDDDLNDIVIECRLVGEPEPTISW  254 (254)
Q Consensus       199 ~~~~~~~v~~~~~~~~~~~~~p~~~~-~~~~~~~~~g~~~~~l~C~~~~~p~p~~~W  254 (254)
                      .....+.|.....      .+|.+.. .+....+..|+ .+.|.|.+.+.|.|.+.|
T Consensus       103 ~~~~~l~V~~~~~------~~p~~~~~~~~~~~~~~g~-~~~l~C~~~~~p~p~v~W  152 (231)
T 3ojm_B          103 NHTYHLDVVERSR------HRPILQAGLPANASTVVGG-DVEFVCKVYSDAQPHIQW  152 (231)
T ss_dssp             EEEEEEEEECCCC------CCCEECTTCSCCEEEETTC-CEEEECCEECSSCCEEEE
T ss_pred             cccEEEEEEcCCC------CCCceeeccCCceEEEeCC-cEEEEEEEecCCCCEEEE
Confidence            7788888764321      1333333 35666778899 999999999999999998

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A

Probab=99.74  E-value=1.5e-17  Score=102.01  Aligned_cols=89  Identities=20%  Similarity=0.358  Sum_probs=74.0

Q ss_pred             CCeeEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeCC--EEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEE
Q psy7036           8 APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGE--TQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYK   85 (254)
Q Consensus         8 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~   85 (254)
                      +|.|...+....+.+|+.+.|.|.+.|.|.+.+.|++++  ..+.....  ....     .....|.|.+++..|+|.|+
T Consensus         2 ~P~i~~~~~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~~~~~~~~~~~~--~~~~-----~~~~~L~i~~~~~~D~G~Y~   74 (93)
T 1wit_A            2 KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELL--VDAK-----SSTTSIFFPSAKRADSGNYK   74 (93)
T ss_dssp             CCEECCCCCEEEECTTBCCEEEEEEECCSSCEEEEECSTTTCBCSTTSE--EEEE-----TTEEEEECTTBCGGGCEEEE
T ss_pred             CCeEEcCCCceEEeCCCEEEEEEEEEEcCCCEEEEEECCCCcccCCcEE--EEec-----CCEEEEEECCCChhcCEEEE
Confidence            688888888889999999999999999999999999999  77654322  2211     12347999999999999999


Q ss_pred             EEEEcCCCceEEEEEEEE
Q psy7036          86 VKAKNKMGEVAASINLNF  103 (254)
Q Consensus        86 C~~~~~~~~~~~~~~l~v  103 (254)
                      |.+.|..|.....+.|.|
T Consensus        75 C~a~N~~G~~~~~~~l~V   92 (93)
T 1wit_A           75 LKVKNELGEDEAIFEVIV   92 (93)
T ss_dssp             EEEEETTEEEEEEEEEEE
T ss_pred             EEEEcCCCeEEEEEEEEE
Confidence            999999998888887776

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}

Probab=99.74  E-value=6.3e-17  Score=117.03  Aligned_cols=125  Identities=19%  Similarity=0.454  Sum_probs=96.3

Q ss_pred             CCeeeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcc-eEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCc
Q psy7036         119 PSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRH-KFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGE  197 (254)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~  197 (254)
                      .....+.+|+.+.|.|.+.+.|.+.+.|++++..+...... ........    ..|.|.+++.+|.|.|+|.+.|..+.
T Consensus        22 ~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~----~~L~i~~v~~~d~G~Y~C~~~~~~~~   97 (241)
T 3grw_A           22 KKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQ----WSLVMESVVPSDRGNYTCVVENKFGS   97 (241)
T ss_dssp             CCEEEEETTSEEEEECCEECSSCCEEEEEETTEECCGGGSTTCCEEEGGG----TEEEECSCCGGGCEEEEEEEEETTEE
T ss_pred             CcceEEcCCCeEEEEEEecCCCCceeEEEECCcccCCCCcccceeeeccc----eEEEEEeCCcccCEEEEEEEeecCCc
Confidence            34577889999999999999999999999999987644322 11111111    27999999999999999999999888


Q ss_pred             ceEEEEEEEecCCCCCCCCCCCCe-eecCCccccccCCCCcEEEEEEEeccCCCceeC
Q psy7036         198 SNATISLNFDSDDAPVPGEGTKPV-FTERPVTKQSDDDLNDIVIECRLVGEPEPTISW  254 (254)
Q Consensus       198 ~~~~~~~~v~~~~~~~~~~~~~p~-~~~~~~~~~~~~g~~~~~l~C~~~~~p~p~~~W  254 (254)
                      ......+.|....+.      +|. +...+....+.+|+ .+.|.|.+.+.|.|.+.|
T Consensus        98 ~~~~~~l~V~~~~~~------~~~~~~~~~~~~~~~~g~-~v~L~C~~~~~p~p~v~W  148 (241)
T 3grw_A           98 IRQTYTLDVLERSPH------RPILQAGLPANQTAVLGS-DVEFHCKVYSDAQPHIQW  148 (241)
T ss_dssp             EEEEEEEEEECCCCC------CCEEEECTTCSEECCTTC-CEEEEEEEECSSCCEEEE
T ss_pred             eEEEEEEEEeccCCC------CceeecCCCccceecCCC-EEEEEEEEecCCCCEEEE
Confidence            888888887653221      233 33345666788898 999999999999999998

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*

Probab=99.73  E-value=1.3e-17  Score=118.80  Aligned_cols=132  Identities=25%  Similarity=0.521  Sum_probs=97.7

Q ss_pred             CCCccccCCCeeeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCc--ceEEEcCCCCceeeEEEEccCCCCCceeEE
Q psy7036         111 LAPTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKR--HKFSIDKDGHSYFASLEIIDVTIEDAGKYK  188 (254)
Q Consensus       111 ~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~  188 (254)
                      .+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+.....  ..+.. .++ .....+.|.+++.+|+|.|+
T Consensus         8 ~~P~i~~~p~~~~v~~G~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~-~~~-~~~~~l~i~~v~~~d~G~Y~   85 (217)
T 2vr9_A            8 QSPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQF-KDG-ALFFYRTMQGKKEQDGGEYW   85 (217)
T ss_dssp             CCCEEEECCCCEEECTTSCEEECCEEECSSCCEEEEEETTEECCCSSSSSSEEEC-TTS-CEEESSCCBSSSCBCCEEEE
T ss_pred             CCCEEecCCCceEEeCCCcEEEEEEcCCCCCCeEEEEECCcCccCCCccceeEEe-cCC-ceEEEEEeccCCcccCceEE
Confidence            566777777778899999999999999999999999999998865432  22222 222 11223478889999999999


Q ss_pred             EEEEcCCCcc-eEEEEEEEecCCCCCCCCCCCCeeecCCccccccCCCCcEEEEEEE-eccCCCceeC
Q psy7036         189 VTAKNELGES-NATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRL-VGEPEPTISW  254 (254)
Q Consensus       189 C~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~l~C~~-~~~p~p~~~W  254 (254)
                      |.+.|..|.. .....+.|...         +|.+...+....+.+|+ .+.|.|.+ .+.|.|.++|
T Consensus        86 C~~~n~~g~~~~~~~~l~v~~~---------~~~~~~~~~~~~~~~g~-~v~l~C~~~~g~p~~~v~W  143 (217)
T 2vr9_A           86 CVAKNRVGQAVSRHASLQIAVL---------RDDFRVEPKDTRVAKGE-TALLECGPPKGIPEPTLIW  143 (217)
T ss_dssp             EEEEETTEEEECCCEEEEECEE---------CCSCSBCCCCEEECTTS-CEEECCBCCCEESCCEEEE
T ss_pred             EEEecCCCccccccceEEEEEe---------CCCcEECCCccEEcCCC-eEEEEEECCCCCCCCeEEE
Confidence            9999988765 33444555421         23344455666778899 99999999 8999999998

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A

Probab=99.73  E-value=5e-17  Score=109.26  Aligned_cols=98  Identities=22%  Similarity=0.422  Sum_probs=83.0

Q ss_pred             CCCCCCeeEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeE
Q psy7036           4 AEDFAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGL   83 (254)
Q Consensus         4 ~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~   83 (254)
                      .+..+|.|...+....+.+|++++|.|.+.|.|.+.+.|+|++..+....++.+....    .....|.|.+++..|+|.
T Consensus        37 ~v~~~P~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~----~~~~~L~I~~v~~~D~G~  112 (154)
T 1fhg_A           37 KPHVKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDE----EGNCSLTISEVCGDDDAK  112 (154)
T ss_dssp             CCCEEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCSSSEEEEECT----TCEEEEEESSCCGGGCEE
T ss_pred             cCCCCCeEEccCCcEEEeCCCeEEEEEEEEEecCCEEEEEECCEECCCCCcEEEEECC----CCeEEEEECCCChhcCEE
Confidence            4456899999999999999999999999999999999999999998776665544321    123489999999999999


Q ss_pred             EEEEEEcCCCceEEEEEEEEec
Q psy7036          84 YKVKAKNKMGEVAASINLNFSR  105 (254)
Q Consensus        84 Y~C~~~~~~~~~~~~~~l~v~~  105 (254)
                      |+|.+.|..|.....+.|.|..
T Consensus       113 Y~C~a~N~~G~~~~~~~l~V~~  134 (154)
T 1fhg_A          113 YTCKAVNSLGEATCTAELLVET  134 (154)
T ss_dssp             EEEEEEETTEEEEEEEEEEEEC
T ss_pred             EEEEEEECCCeEEEEEEEEEeC
Confidence            9999999999988888888873

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.73  E-value=2.6e-17  Score=102.10  Aligned_cols=91  Identities=12%  Similarity=0.220  Sum_probs=75.7

Q ss_pred             CCCCCeeEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEE
Q psy7036           5 EDFAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLY   84 (254)
Q Consensus         5 ~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y   84 (254)
                      ...+|.|...+.+..+.+|+++.|.|.+  .|.+.++|+|+|..+....++.+...  +   ..+.|.|.+++.+|+|.|
T Consensus         4 ~~~p~~~~~~~~~~~v~~G~~v~l~C~v--~p~p~v~W~k~g~~l~~~~r~~i~~~--~---~~~~L~I~~v~~~D~G~Y   76 (100)
T 2yuz_A            4 GSSGLKILTPLTDQTVNLGKEICLKCEI--SENIPGKWTKNGLPVQESDRLKVVQK--G---RIHKLVIANALTEDEGDY   76 (100)
T ss_dssp             SSCCCCCSBCCCCEEEETTSCCCEEEEC--SSCCCEEEEETTEECCCCSSEEEEEC--S---SEEEEEESSCCGGGCSEE
T ss_pred             CCCCCEEeccCCceEEcCCCCEEEEEEe--CCCCeEEEEECCEECCCCCcEEEEEe--C---CEEEEEECCCChhhCEEE
Confidence            3457889999999999999999999999  78899999999999987766655432  1   234799999999999999


Q ss_pred             EEEEEcCCCceEEEEEEEEe
Q psy7036          85 KVKAKNKMGEVAASINLNFS  104 (254)
Q Consensus        85 ~C~~~~~~~~~~~~~~l~v~  104 (254)
                      +|.+.|.  ....++.|.|.
T Consensus        77 ~C~a~N~--~~~~~a~L~V~   94 (100)
T 2yuz_A           77 VFAPDAY--NVTLPAKVHVI   94 (100)
T ss_dssp             EEEESSS--CCCEEEEEEEE
T ss_pred             EEEEcCC--CeeEEEEEEEe
Confidence            9999987  45567777876

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}

Probab=99.73  E-value=9.2e-17  Score=114.45  Aligned_cols=130  Identities=18%  Similarity=0.288  Sum_probs=99.5

Q ss_pred             CCCccccCCCeeeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEE
Q psy7036         111 LAPTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVT  190 (254)
Q Consensus       111 ~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~  190 (254)
                      ..+.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+....        +     ..|.|.+++.+|+|.|+|.
T Consensus        17 ~~~~i~~~p~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~--------~-----~~L~i~~v~~~d~G~Y~C~   83 (218)
T 3k0w_A           17 RGSKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNGN--------T-----SELIFNAVHVKDAGFYVCR   83 (218)
T ss_dssp             --CCEEECCCCEEEETTSBEEEECEETTTTSSEEEEEETTEECTTCC--------S-----SEEEETTCCGGGCEEEEEE
T ss_pred             CCCEEEECCCCeEEeCCCcEEEEeeecCCCCCEEEEEECCEECCCCC--------C-----CEEEEccCChhhCeEeEEE
Confidence            34455666677888899999999999999999999999998875432        1     2799999999999999999


Q ss_pred             EEcCCCcc-eEEEEEEEecCCCCC-----CCCCCCCeeecCCccccccCCCCcEEEEEEEeccCCCceeC
Q psy7036         191 AKNELGES-NATISLNFDSDDAPV-----PGEGTKPVFTERPVTKQSDDDLNDIVIECRLVGEPEPTISW  254 (254)
Q Consensus       191 ~~~~~~~~-~~~~~~~v~~~~~~~-----~~~~~~p~~~~~~~~~~~~~g~~~~~l~C~~~~~p~p~~~W  254 (254)
                      +.|..+.. ...+.+.|.......     .....+|.+...+....+.+|+ .+.|.|.+.|.|.|.++|
T Consensus        84 ~~n~~~~~~s~~~~l~V~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~-~v~L~C~~~g~p~~~v~W  152 (218)
T 3k0w_A           84 VNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVEPTSQKLMPGS-TLVLQCVAVGSPIPHYQW  152 (218)
T ss_dssp             EECTTCCEECCCEEEEEECCCGGGCTTCCSBCCSSCEEEECCCCEEECTTC-CEEEECEEEBSSCCEEEE
T ss_pred             EEcCCCCceeeEEEEEEEccCcccccccccccCCCceEEECCCceeecCCC-cEEEEEEecccCCCeEEE
Confidence            99987754 445666666432110     0011246777777777888999 999999999999999998

>1iam_A ICAM-1, CD54, intercellular adhesion molecule-1; rhinovirus receptor, cell adhesion, integrin ligand, glycopr LFA-1 ligand, immunoglobulin fold; HET: NAG; 2.10A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ic1_A* 1d3l_A 1d3e_I 1d3i_I 3tcx_A

Probab=99.73  E-value=1.7e-15  Score=103.58  Aligned_cols=162  Identities=14%  Similarity=0.149  Sum_probs=105.6

Q ss_pred             eEeCCCceeecCCCeEEEEEEEeeCCCCc-eEEEeC-CEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEE
Q psy7036          11 FTQKPQLRQEDEGNRLIFECQLLCNPKPD-IVWFRG-ETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKA   88 (254)
Q Consensus        11 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~-v~W~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~   88 (254)
                      +.+.|+...|.+|+++.|+|.+. .+.+. +.|.-. ++......           ......|.|.+++. | |.|.|.+
T Consensus         2 v~v~P~~~~V~~G~Sv~l~Cs~~-c~~p~~~~~~t~l~~~~~~~~-----------~~~~~~l~l~~vs~-~-g~y~C~~   67 (185)
T 1iam_A            2 TSVSPSKVILPRGGSVLVTCSTS-CDQPKLLGIETPLPKKELLLP-----------GNNRKVYELSNVQE-D-SQPMCYS   67 (185)
T ss_dssp             EEEESSEEEEETTEEEEEEEEEC-SSSCSEEEEECSSCEEEECSS-----------SSSEEEEEEEEECS-C-BCCEEEE
T ss_pred             eEEECCCcEEeCCCCEEEEEEcc-CCCCccceEEeeCCCccEecc-----------CCceeEEEEEecCc-C-CEEEEEE
Confidence            45667778899999999999996 44444 677521 11111010           11122689999983 3 9999999


Q ss_pred             EcCCCceEEEEEEEEeccccCCCCCccccCCCeeeecCCCeEEEEEEEeeC-CCC--eEEEEECCEecccCCcceEEEcC
Q psy7036          89 KNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQAD-PAP--TVIWSHSGVQVKEDKRHKFSIDK  165 (254)
Q Consensus        89 ~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~--~~~W~~~~~~~~~~~~~~~~~~~  165 (254)
                      ..........+.|.|..     .|......+....+.+|+.++|.|.+.+. |..  .+.|+|++..+.....    ...
T Consensus        68 ~c~~~~~~~~~~l~V~~-----~P~~v~i~~~~~~~~~G~~~tL~C~v~g~~P~~~l~i~w~kg~~~l~~~~~----~~~  138 (185)
T 1iam_A           68 NCPDGQSTAKTFLTVYW-----TPERVELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREPA----VGE  138 (185)
T ss_dssp             ECSSCEEEEECEEEEEB-----CCSEEEECCCCSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEEC----CTT
T ss_pred             ECCCCceEEEEEEEEeC-----CCCCCEEccCCccccCCCcEEEEEEcCCccCCCCcEEEEEeCCEEcccccC----CCc
Confidence            76655667788888863     23333344444457789999999999885 443  4899999988753220    011


Q ss_pred             CCCceeeEEEEccCCCCCceeEEEEEEcCCCcc
Q psy7036         166 DGHSYFASLEIIDVTIEDAGKYKVTAKNELGES  198 (254)
Q Consensus       166 ~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~  198 (254)
                      +   ...+|++...+.+|...|+|+|.|..+..
T Consensus       139 ~---~~~tl~~~~~reD~g~~~sC~A~~~l~~~  168 (185)
T 1iam_A          139 P---AEVTTTVLVRRDHHGAQFSCRTELDLRPQ  168 (185)
T ss_dssp             T---EEEEEEEECCSSCSSCEEEEEEEEECGGG
T ss_pred             c---ccEEEEEeceeccCCCeEEEEEEecCccc
Confidence            1   12257766555555559999999987743

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.73  E-value=1.6e-16  Score=101.48  Aligned_cols=100  Identities=21%  Similarity=0.314  Sum_probs=75.9

Q ss_pred             CCCCeeEeCCCceeecCCCeEEEEEEEeeC---CCCceEEEeCCEE-eee--CCcceEEE-eecCCcceEEEEEEeccCC
Q psy7036           6 DFAPSFTQKPQLRQEDEGNRLIFECQLLCN---PKPDIVWFRGETQ-LSE--DTRTVMKT-TPIGTNKYLVALELDDVIE   78 (254)
Q Consensus         6 ~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~---~~~~v~W~~~~~~-~~~--~~~~~~~~-~~~~~~~~~~~l~i~~~~~   78 (254)
                      ..-|.|...|+.+.+.+|++++|.|.+.+.   |.|.|+|||+... +..  ..++.+.. .......+.+.|+|.+++.
T Consensus         5 ~~~~~F~~~P~~v~V~eG~~v~L~C~v~g~~~~p~P~V~W~Kgk~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~   84 (126)
T 2dav_A            5 SSGILFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKD   84 (126)
T ss_dssp             CSSCSCCSCCCCCEEETTCCEEEEEEEECCCSSSCCEEEEEESSSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCT
T ss_pred             CcccEEEEcCCCeEEeCCCCEEEEEEEeccCCCCCCcEEEeeCcCcccCCCCCceEEEccccccccccceEEEEEccCCc
Confidence            345678999999999999999999999774   7899999997421 111  22333321 1122223456899999999


Q ss_pred             CCCeEEEEEEEcCCCceEEEEEEEEec
Q psy7036          79 TDAGLYKVKAKNKMGEVAASINLNFSR  105 (254)
Q Consensus        79 ~d~G~Y~C~~~~~~~~~~~~~~l~v~~  105 (254)
                      .|+|.|+|++.|..+.....+.|.|..
T Consensus        85 ~DaG~Y~Cevsn~~g~~~~~~~L~V~~  111 (126)
T 2dav_A           85 NFAGNYRCEVTYKDKFDSCSFDLEVHE  111 (126)
T ss_dssp             TSCEEEEEEEECSSCEEEECCEEEEEC
T ss_pred             ccCEEEEEEEEeCCCcEEEEEEEEEEe
Confidence            999999999999999998999999874

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A

Probab=99.73  E-value=1.4e-16  Score=100.51  Aligned_cols=98  Identities=18%  Similarity=0.283  Sum_probs=74.6

Q ss_pred             CCCeeEeCCCceeecCCCeEEEEEEEeeCCC---CceEEEeCCEEeee---CCcceEEEee-cCCcceEEEEEEeccCCC
Q psy7036           7 FAPSFTQKPQLRQEDEGNRLIFECQLLCNPK---PDIVWFRGETQLSE---DTRTVMKTTP-IGTNKYLVALELDDVIET   79 (254)
Q Consensus         7 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~---~~v~W~~~~~~~~~---~~~~~~~~~~-~~~~~~~~~l~i~~~~~~   79 (254)
                      ..|.|...|....+.+|++++|.|.+.|.|.   +.+.|||++.....   ..++.+.... .........|.|.+++..
T Consensus         3 p~p~f~~~p~~~~v~~G~~v~L~C~~~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~   82 (108)
T 3cx2_A            3 PIGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPA   82 (108)
T ss_dssp             CCCSCSBCCCCEEEETTCCEEEEEEEECC-CCSCCEEEEEETTTEEGGGGCBTTEEEEEEEETTTTEEEEEEEECSCCGG
T ss_pred             CccEEEeCCCcEEEeCCCCEEEEEEECCCccCCCcEEEEccCCcccccccCCceEEEeeEEecccccceEEEEEecCCCc
Confidence            4688999999999999999999999999887   99999998732211   1222222111 111223458999999999


Q ss_pred             CCeEEEEEEEcCCCceEEEEEEEEe
Q psy7036          80 DAGLYKVKAKNKMGEVAASINLNFS  104 (254)
Q Consensus        80 d~G~Y~C~~~~~~~~~~~~~~l~v~  104 (254)
                      |+|.|+|.+.|..|.....+.|.|.
T Consensus        83 D~G~Y~C~a~N~~G~~~~~~~L~V~  107 (108)
T 3cx2_A           83 FTGSYRCEVSTKDKFDCSNFNLTVH  107 (108)
T ss_dssp             GCEEEEEEEECSSCEEEEEEEEEEE
T ss_pred             cCEEEEEEEecCCCceEEEEEEEEe
Confidence            9999999999999999888888874

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A

Probab=99.73  E-value=7.7e-18  Score=105.82  Aligned_cols=94  Identities=30%  Similarity=0.489  Sum_probs=79.4

Q ss_pred             CCCCeeEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEE
Q psy7036           6 DFAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYK   85 (254)
Q Consensus         6 ~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~   85 (254)
                      ..+|.|...|....+.+|+++.|.|.+.|.|.+.+.|++++..+....++.+...     .....|.|.+++..|+|.|+
T Consensus        12 ~~~~~i~~~p~~~~v~~G~~v~L~C~~~g~p~p~v~W~k~g~~l~~~~~~~~~~~-----~~~~~L~I~~v~~~D~G~Y~   86 (106)
T 1nct_A           12 TLAARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTT-----KYKSTFEISSVQASDEGNYS   86 (106)
T ss_dssp             SCCCEEEECCCCEEESSSSCEECCEEEECSSCCBCCBCSSSSCCTTCSSEEEEEC-----SSEEEEEECCCCSSCCSEEE
T ss_pred             CCCCEEEECCCCEEEeCCCcEEEEEEEEEcCCCEEEEEECCEECCCCCCEEEEEC-----CCEEEEEECcCCchhCEEEE
Confidence            3578899999999999999999999999999999999999988766555544321     12348999999999999999


Q ss_pred             EEEEcCCCceEEEEEEEEe
Q psy7036          86 VKAKNKMGEVAASINLNFS  104 (254)
Q Consensus        86 C~~~~~~~~~~~~~~l~v~  104 (254)
                      |.+.|..|.....+.|.|.
T Consensus        87 C~a~N~~G~~~~~~~l~V~  105 (106)
T 1nct_A           87 VVVENSEGKQEAEFTLTIQ  105 (106)
T ss_dssp             ECCBCSSCBCCEEEEEEEC
T ss_pred             EEEEeCCCeEEEEEEEEEE
Confidence            9999999998888888774

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A

Probab=99.72  E-value=1e-16  Score=97.91  Aligned_cols=89  Identities=17%  Similarity=0.073  Sum_probs=72.0

Q ss_pred             CCCCeeEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEE
Q psy7036           6 DFAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYK   85 (254)
Q Consensus         6 ~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~   85 (254)
                      ..+|.|...+.+..+.+|++++|.|.+.+ +.+.++|+|+|..+....++.+...  +   ..+.|.|.+++.+|+|.|+
T Consensus         3 ~~~~~~~~~~~~~~v~~G~~v~l~C~v~~-~~~~v~W~k~g~~i~~~~~~~i~~~--g---~~~~L~I~~v~~~D~G~Y~   76 (93)
T 1waa_A            3 MALIEVEKPLYGVEVFVGETAHFEIELSE-PDVHGQWKLKGQPLAASPDCEIIED--G---KKHILILHNCQLGMTGEVS   76 (93)
T ss_dssp             CCCCCEEECCCCEEEETTSCEEEEEEESS-SSCCCEEEETTEECCCBTTEEEEEE--T---TEEEEEECSCCGGGCEEEE
T ss_pred             CCCcEeeccCcceEEeCCCCEEEEEEECC-CCCeEEEEECCEECcCCCCEEEEEE--C---CEEEEEECCCChhhCEEEE
Confidence            35788999999999999999999999975 4578999999999987766655432  1   2237999999999999999


Q ss_pred             EEEEcCCCceEEEEEEEEe
Q psy7036          86 VKAKNKMGEVAASINLNFS  104 (254)
Q Consensus        86 C~~~~~~~~~~~~~~l~v~  104 (254)
                      |.+.|.    ..+..|.|.
T Consensus        77 C~a~n~----~~sa~L~V~   91 (93)
T 1waa_A           77 FQAANT----KSAANLKVK   91 (93)
T ss_dssp             EEETTE----EEEEEEEEE
T ss_pred             EEECCC----cEEEEEEEE
Confidence            999764    356677764

>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B

Probab=99.72  E-value=2e-16  Score=111.31  Aligned_cols=122  Identities=13%  Similarity=0.196  Sum_probs=85.7

Q ss_pred             CeeeecCCCeEEEEEEEeeCCC-----CeEEEEE-CCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEc
Q psy7036         120 SIRQEDDGKRLLFECRIQADPA-----PTVIWSH-SGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKN  193 (254)
Q Consensus       120 ~~~~~~~g~~~~l~C~~~~~~~-----~~~~W~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~  193 (254)
                      ..+.+..|+.+.|.|.+.+.|.     +.+.|+| ++.......+..+. ..........|.|.+++.+|+|.|+|.+.|
T Consensus        10 ~~v~v~~G~~v~L~C~~~~~p~~~~~~~~v~W~k~~~~~~~~~~r~~~~-~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~   88 (202)
T 3bp6_B           10 EVYTVDVGSSVSLECDFDRRECTELEGIRASLQKVENDTSLQSERATLL-EEQLPLGKALFHIPSVQVRDSGQYRCLVIC   88 (202)
T ss_dssp             SEEEEETTSCEEEEEEECTTC---CTTEEEEEEECC--CCCBCSSCEEC-GGGGGGTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             cCEEEeCCCcEEEEEEecCCCCCCccceEEEEEcCCCcccccCCceEEe-eccccCCeeEEEECCCCHHHCcEEEEEEEe
Confidence            4567889999999999988875     7899999 44333222222221 111011224899999999999999999999


Q ss_pred             CCCcceEEEEEEEecCCCCCCCCCCCCeeecCCccccccCCCCcEEEEEEEeccCCCceeC
Q psy7036         194 ELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLVGEPEPTISW  254 (254)
Q Consensus       194 ~~~~~~~~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~l~C~~~~~p~p~~~W  254 (254)
                      ..+.....+.|.|....       ..|.+..    ..+.+|+ .+.|.|.+.|+|.|.++|
T Consensus        89 ~~~~~~~~~~l~V~~~~-------~~p~~~~----~~~~~g~-~v~l~C~~~g~P~p~v~W  137 (202)
T 3bp6_B           89 GAAWDYKYLTVKVKASY-------MRIDTRI----LEVPGTG-EVQLTCQARGYPLAEVSW  137 (202)
T ss_dssp             TTEEEEEEEEEEEEBCC-------CCEEEEE----EECTTTC-CEEEEEEEEEBSCCEEEE
T ss_pred             CCCcceEEEEEEecCCC-------CcccEEE----EecCCCC-eEEEEEEccccCCceEEE
Confidence            98877778888877421       2233322    1345688 999999999999999999

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}

Probab=99.72  E-value=1.3e-16  Score=112.60  Aligned_cols=128  Identities=15%  Similarity=0.240  Sum_probs=90.5

Q ss_pred             eeeecCCCeEEEEEEEee-CCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcce
Q psy7036         121 IRQEDDGKRLLFECRIQA-DPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESN  199 (254)
Q Consensus       121 ~~~~~~g~~~~l~C~~~~-~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~  199 (254)
                      ...+.+|..+.|.|.+.+ .|.+.+.|++++..+..+....+......  ....|.|.+++.+|+|.|+|.|.|  |...
T Consensus        11 ~~~v~eg~~v~l~c~~~~~~P~p~i~W~kng~~l~~~~~~~~~~~~~~--g~~~L~I~~v~~~D~G~Y~C~a~N--g~a~   86 (207)
T 3rbs_A           11 AVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNT--GIIEMFMEKLQDEDEGTYTFQLQD--GKAT   86 (207)
T ss_dssp             EEEECGGGCEEEEEECSCCCSCCEEEEEETTEEECSSSSCEEEECTTT--CEEEEEESCCCGGGCEEEEEEEEE--TTEE
T ss_pred             ceEEEeCCeEEEEEEEecCCCCCEEEEEECCEECccCCCEEEEEeCCC--CEEEEEECCCChhhCEEEEEEEEC--CCeE
Confidence            467788999999999864 78999999999999987666655543321  223799999999999999999999  4444


Q ss_pred             EEEEEEEecCCC-------CC----CCCCCCCeeecCCccccccCCCCcEEEEEEEecc-CCCceeC
Q psy7036         200 ATISLNFDSDDA-------PV----PGEGTKPVFTERPVTKQSDDDLNDIVIECRLVGE-PEPTISW  254 (254)
Q Consensus       200 ~~~~~~v~~~~~-------~~----~~~~~~p~~~~~~~~~~~~~g~~~~~l~C~~~~~-p~p~~~W  254 (254)
                      ....+.+.....       ..    .....+|.|...+ ...+.+|+ .+.|.|.+.|. |.|.++|
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~-~~~v~~g~-~v~l~C~v~g~~P~p~i~W  151 (207)
T 3rbs_A           87 NHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYL-SWEVTGEC-NVLLKCKVANIKKETHIVW  151 (207)
T ss_dssp             EEEEEEECTHHHHHHHHHHHHHHHHHHHHTSSEEEEEE-EEEEETTT-EEEEEEEEESCCTTCEEEE
T ss_pred             EEEEEEEEccchhhhcccccccccccccCCCCceEecC-CcEEcCCC-cEEEEEEEeCCCCCCEEEE
Confidence            444332210000       00    0000145565544 46778899 99999999999 9999999

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.72  E-value=6.6e-17  Score=100.55  Aligned_cols=93  Identities=19%  Similarity=0.335  Sum_probs=76.9

Q ss_pred             CCCCeeEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEE
Q psy7036           6 DFAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYK   85 (254)
Q Consensus         6 ~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~   85 (254)
                      ..+|.|...|....+.+|++++|.|.+.+.|.+.+.|++++..+..... ++.....+      .|.|.+++..|+|.|+
T Consensus         6 ~~~P~i~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~-~~~~~~~~------~L~i~~v~~~d~G~Y~   78 (100)
T 2edj_A            6 SGPPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDP-RATIQEQG------TLQIKNLRISDTGTYT   78 (100)
T ss_dssp             CSSCEEEECCCCEEEESSSEEEECCEEECSSCCEEEEEESSSEESSSCS-SCEECTTC------CEEEESCCTTTCCEEE
T ss_pred             CCCCEEEeCcCCEEEcCCCcEEEEEEEEEcCCCEEEEEECCEECCCCCC-CEEEcCCC------EEEEccCCcccCEEEE
Confidence            4588999999999999999999999999999999999999988763222 12212121      6999999999999999


Q ss_pred             EEEEcCCCceEEEEEEEEec
Q psy7036          86 VKAKNKMGEVAASINLNFSR  105 (254)
Q Consensus        86 C~~~~~~~~~~~~~~l~v~~  105 (254)
                      |.+.|..|.....+.|.|.+
T Consensus        79 C~a~n~~g~~~~~~~l~V~~   98 (100)
T 2edj_A           79 CVATSSSGETSWSAVLDVTE   98 (100)
T ss_dssp             EEEECSSCCCBCCEEEEEES
T ss_pred             EEEEcCCCCEEEEEEEEEec
Confidence            99999999888888888863

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens}

Probab=99.72  E-value=1.8e-16  Score=97.92  Aligned_cols=90  Identities=19%  Similarity=0.350  Sum_probs=75.4

Q ss_pred             eeEeCCCceeecCCCeEEEEEEEeeC-CCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEE
Q psy7036          10 SFTQKPQLRQEDEGNRLIFECQLLCN-PKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKA   88 (254)
Q Consensus        10 ~~~~~~~~~~v~~g~~v~l~C~~~~~-~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~   88 (254)
                      .+...|....+.+|++++|.|.+.+. |.+.+.|++++..+....++.+...     .....|.|.+++..|+|.|+|.+
T Consensus         3 ~v~~~~~~~~v~~G~~v~l~C~~~g~~p~~~v~W~~~~~~~~~~~~~~~~~~-----~~~~~L~i~~v~~~D~G~Y~C~a   77 (97)
T 2bk8_A            3 MVSGQIMHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYE-----DGVAILYVKDITKLDDGTYRCKV   77 (97)
T ss_dssp             CEECCCCCEEECTTCCEEEEEEEESCCTTCEEEEEETTEECCSSSSEEEEEE-----TTEEEEEECSCCGGGCEEEEEEE
T ss_pred             ceeccCcCEEEcCCCcEEEEEEEeccCCCCEEEEEECCEECcCCCCEEEEEc-----CCeEEEEEecCChhhCeEEEEEE
Confidence            35567778899999999999999986 8999999999999877666554332     12347999999999999999999


Q ss_pred             EcCCCceEEEEEEEEe
Q psy7036          89 KNKMGEVAASINLNFS  104 (254)
Q Consensus        89 ~~~~~~~~~~~~l~v~  104 (254)
                      .|..|.....+.|.|.
T Consensus        78 ~n~~g~~~~~~~l~V~   93 (97)
T 2bk8_A           78 VNDYGEDSSYAELFVK   93 (97)
T ss_dssp             ECSSCEEEEEEEEEET
T ss_pred             ECCCCeEeEEEEEEEE
Confidence            9999998888888875

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.72  E-value=4.5e-17  Score=104.49  Aligned_cols=94  Identities=20%  Similarity=0.314  Sum_probs=77.7

Q ss_pred             CCCCCeeEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEE
Q psy7036           5 EDFAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLY   84 (254)
Q Consensus         5 ~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y   84 (254)
                      ...+|.|...+....+.+|++++|.|.+.|.|.+.+.|+|++..+..... ++.....+      .|.|.+++.+|+|.|
T Consensus         5 ~~~pP~i~~~p~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~g~~~~~~~~-~~~~~~~~------~L~i~~v~~~D~G~Y   77 (118)
T 2eo9_A            5 SSGPPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDS-RIKQLENG------VLQIRYAKLGDTGRY   77 (118)
T ss_dssp             CCCSCCCSBCCCCEEEETTCEEEEECBCCCSSCCEEEEEESSSBCCTTST-TEEEEETT------EEEEESCCGGGCCCE
T ss_pred             CCCCCEEEcCCCCEEEcCCCeEEEEEEEEecCCCEEEEEECCEECcCCCC-eEEEccCC------EEEEccCCcCCCEEE
Confidence            34588999999999999999999999999999999999999988754222 22222222      799999999999999


Q ss_pred             EEEEEcCCCceEEEEEEEEec
Q psy7036          85 KVKAKNKMGEVAASINLNFSR  105 (254)
Q Consensus        85 ~C~~~~~~~~~~~~~~l~v~~  105 (254)
                      +|.+.|..|.....+.|.|..
T Consensus        78 ~C~a~n~~g~~~~~~~l~V~~   98 (118)
T 2eo9_A           78 TCIASTPSGEATWSAYIEVQE   98 (118)
T ss_dssp             EEEEECSSCEEEEECCEEEEC
T ss_pred             EEEEEcCCCcEEEEEEEEEEe
Confidence            999999999988888888874

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4

Probab=99.71  E-value=6.5e-17  Score=114.57  Aligned_cols=121  Identities=19%  Similarity=0.299  Sum_probs=88.8

Q ss_pred             cCCCeeeecCCCeEEEEEEEeeCCCCeEEEEECCEecc----------cCCcceEEEcCCCCceeeEEEEccCCCCCcee
Q psy7036         117 KKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVK----------EDKRHKFSIDKDGHSYFASLEIIDVTIEDAGK  186 (254)
Q Consensus       117 ~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~----------~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~  186 (254)
                      ..+....+.+|+.+.|.|.+.+.|.+.+.|++++..+.          .....++....      ..|.|.+++.+|+|.
T Consensus         6 ~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~~------~~L~i~~v~~~D~G~   79 (212)
T 1f97_A            6 TAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSS------SGITFSSVTRKDNGE   79 (212)
T ss_dssp             CSCSEEEEETTCCEEEECEEESCSSEEEEEEEEETTEEEEEEETTEECGGGTTTEEEET------TEEEESCCCGGGCEE
T ss_pred             ecCCCeEEEcCCCEEEEeEeCCCCCcEEEEEECCCceeeEEecCCcccccccCcEEeec------eeEEEcccCcccCeE
Confidence            34556778899999999999988899999999875521          11111222222      379999999999999


Q ss_pred             EEEEEEcCCC--cceEEEEEEEecCCCCCCCCCCCCeeecCCccccccCCCCcEEEEEE-EeccCCCceeC
Q psy7036         187 YKVTAKNELG--ESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECR-LVGEPEPTISW  254 (254)
Q Consensus       187 y~C~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~l~C~-~~~~p~p~~~W  254 (254)
                      |+|.+.+..|  .....+.|.|..          +|.+...+....+.+|+ .+.|.|. +.+.|.|.++|
T Consensus        80 Y~C~~~~~~g~~~~~~~~~l~V~~----------~p~~~~~~~~~~~~~g~-~~~l~C~~~~~~p~~~i~W  139 (212)
T 1f97_A           80 YTCMVSEEGGQNYGEVSIHLTVLV----------PPSKPTISVPSSVTIGN-RAVLTCSEHDGSPPSEYSW  139 (212)
T ss_dssp             EEEEEEETTSSSEEEEEEEEEEEB----------CCCCCEEECCSEEETTS-CEEEEEECSCCBSCCEEEE
T ss_pred             EEEEEEccCCCcccEEEEEEEEEc----------CCCCcccCCccccCCCC-eEEEEEEcccCcCCCEEEE
Confidence            9999999877  345666677764          22232223334677888 9999999 79999999998

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} SCOP: b.1.1.0

Probab=99.71  E-value=1.4e-17  Score=105.14  Aligned_cols=98  Identities=26%  Similarity=0.437  Sum_probs=69.3

Q ss_pred             CCCCCCCCCeeEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCC
Q psy7036           1 MGIAEDFAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETD   80 (254)
Q Consensus         1 ~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d   80 (254)
                      +.|.+..+|.|...+....+.+|++++|.|.+.|.|.+.+.|++++..+....+....  ...     ..|.|.+++..|
T Consensus         3 ~~v~~~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~--~~~-----~~L~i~~v~~~D   75 (108)
T 3kvq_A            3 LTVLERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLK--DGN-----RNLTIRRVRKED   75 (108)
T ss_dssp             --------CCCBSCCCCEEEETTCCEEEECBCC----CCEEEEESSSBCCCBTTEEEE--TTT-----TEEEECSCCGGG
T ss_pred             eeECccCCCceecCCCCeEEeCCCeEEEEEECcCcCCCeEEEEECCeEcccCCCeEEe--CCC-----cEEEEeecCccc
Confidence            3566778999999999999999999999999999999999999999887655443321  111     179999999999


Q ss_pred             CeEEEEEEEcCCCceEEEEEEEEec
Q psy7036          81 AGLYKVKAKNKMGEVAASINLNFSR  105 (254)
Q Consensus        81 ~G~Y~C~~~~~~~~~~~~~~l~v~~  105 (254)
                      +|.|+|.+.|..|.....+.|.|..
T Consensus        76 ~G~Y~C~a~n~~g~~~~~~~l~V~~  100 (108)
T 3kvq_A           76 EGLYTCQACSVLGCAKVEAFFIIEG  100 (108)
T ss_dssp             CEEEEEEEC----CEEEEEEEEEEC
T ss_pred             CEEEEEEEEeCCCceEEEEEEEEeC
Confidence            9999999999999988888888863

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.71  E-value=1.8e-17  Score=104.98  Aligned_cols=97  Identities=26%  Similarity=0.420  Sum_probs=81.2

Q ss_pred             CCCCCeeEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEE
Q psy7036           5 EDFAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLY   84 (254)
Q Consensus         5 ~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y   84 (254)
                      ...+|.|...+....+.+|++++|.|.+.+.|.+.+.|++++..+.............    ....|.|.+++..|+|.|
T Consensus         6 ~~~~P~i~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~----~~~~L~i~~v~~~D~G~Y   81 (110)
T 2dm3_A            6 SGFRPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVREN----GVHSLIIEPVTSRDAGIY   81 (110)
T ss_dssp             CCCCCEEEECCCEEEEESSSCBCCEEEEECSSCCEEECBBSSSBCCCCSSEEEEECTT----SCEEEEESSCCGGGCSBB
T ss_pred             CCCCCcEEeCCCcEEEeCCCEEEEEEEEEEcCCCEEEEEECCEECCCCCceEEEEecC----CeEEEEEeeCCcccCEEE
Confidence            4578999999999999999999999999999999999999998877655443332221    234799999999999999


Q ss_pred             EEEEEcCCCceEEEEEEEEec
Q psy7036          85 KVKAKNKMGEVAASINLNFSR  105 (254)
Q Consensus        85 ~C~~~~~~~~~~~~~~l~v~~  105 (254)
                      +|.+.|..|.....+.|.|..
T Consensus        82 ~C~a~n~~g~~~~~~~l~V~~  102 (110)
T 2dm3_A           82 TCIATNRAGQNSFSLELVVAA  102 (110)
T ss_dssp             CEEEECSSCEEEECCEEEEEC
T ss_pred             EEEEECCCCEEEEEEEEEEeC
Confidence            999999999988888888874

>3f8u_B Tapasin; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens}

Probab=99.71  E-value=1.5e-15  Score=115.28  Aligned_cols=177  Identities=16%  Similarity=0.173  Sum_probs=108.9

Q ss_pred             CCCceeecCCCeEEEEEEEeeCC--------------CCceEEEeC--CE--Ee--e-eCC-------c-ceEEEee---
Q psy7036          14 KPQLRQEDEGNRLIFECQLLCNP--------------KPDIVWFRG--ET--QL--S-EDT-------R-TVMKTTP---   61 (254)
Q Consensus        14 ~~~~~~v~~g~~v~l~C~~~~~~--------------~~~v~W~~~--~~--~~--~-~~~-------~-~~~~~~~---   61 (254)
                      .+..+.+.+|++++|.|.....+              ...+.||+.  |+  .+  . .+.       + ....+..   
T Consensus       164 q~~sv~a~~Ge~vtL~C~~S~~~~~~~a~~~~~~~~~~~~V~Wyrq~pg~~~~vliY~~g~~~q~~~~~~g~~~f~~~~~  243 (401)
T 3f8u_B          164 HTPAPRVRLGQDALLDLSFAYMPPTSEAASSLAPGPPPFGLEWRRQHLGKGHLLLAATPGLNGQMPAAQEGAVAFAAWDD  243 (401)
T ss_dssp             SCSSCEEETTSCEEECCEEEECCCTTC------CCSCCCEEEEEEEETTEEEEEEEECTTSCCCCCCCCTTCEEEEEESC
T ss_pred             CCCcEEEeCCCCEEEEEeCCCCcccccccccccccCCceEEEEEEecCCCCcEEEEEeCCCccccccccCCeEEEEeecc
Confidence            55677899999999999986433              346899963  32  11  1 110       0 1111110   


Q ss_pred             c---CCcceEEEEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEEeccccCCCCCccccCCCeee-ecCCC-eEEEEEEE
Q psy7036          62 I---GTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQ-EDDGK-RLLFECRI  136 (254)
Q Consensus        62 ~---~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~-~~~g~-~~~l~C~~  136 (254)
                      +   +......+|.|.+++..|+|.|.|.+.+..+.....+.|.|.      .+|.+...+.... ...|+ .++|.|.+
T Consensus       244 ~~~~g~~~g~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~v~L~V~------~pP~V~v~p~~~~~~~~G~~~vtL~C~a  317 (401)
T 3f8u_B          244 DEPWGPWTGNGTFWLPRVQPFQEGTYLATIHLPYLQGQVTLELAVY------KPPKVSLMPATLARAAPGEAPPELLCLV  317 (401)
T ss_dssp             CCSSCCEEEEEEEEETTCCGGGCEEEEEEEEETTEEEEEEEEEEEE------BCCEEEEESSSCCCCCTTCCCCCEEEEE
T ss_pred             cccccccCCcEEEEECcCCHhhCceEEEEEEecccceeEEEEEeec------cCCeEeeccCcceeecCCCccEEEEEEe
Confidence            1   123456799999999999999999999887776677777776      3444433322222 34565 79999999


Q ss_pred             eeC-CC--CeEEEE-ECCE---ecccCCc---ceEEEcCCC-CceeeEEEEccCCCCCc-eeEEEEEEcCCC
Q psy7036         137 QAD-PA--PTVIWS-HSGV---QVKEDKR---HKFSIDKDG-HSYFASLEIIDVTIEDA-GKYKVTAKNELG  196 (254)
Q Consensus       137 ~~~-~~--~~~~W~-~~~~---~~~~~~~---~~~~~~~~~-~~~~~~l~i~~~~~~d~-G~y~C~~~~~~~  196 (254)
                      .++ |.  +.+.|. +++.   .+.....   .......++ +...+.|.+...+.++. +.|+|.+.|...
T Consensus       318 ~GfyP~~~~~VtW~~rdg~~g~~~~~~~~~~~s~~~~~~DGTysvsS~L~V~~~~~e~~g~~YTC~V~H~sL  389 (401)
T 3f8u_B          318 SHFYPSGGLEVEWELRGGPGGRSQKAEGQRWLSALRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPSL  389 (401)
T ss_dssp             EEEBSSTTCEEEEEEESSSSCSCEECCSEEEECCCEECTTSCEEEEEEEECCCCCGGGTTCEEEEEEECTTS
T ss_pred             cCCcCCCCcEEEEEecCCCCCceecccccccccccccCCCceEEEEEEEEEccCccccCCCEEEEEEEcCCC
Confidence            885 54  689995 7652   1111110   111222333 23445677766543344 599999999763

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X

Probab=99.71  E-value=4.1e-16  Score=99.43  Aligned_cols=95  Identities=20%  Similarity=0.241  Sum_probs=73.8

Q ss_pred             CCCeeEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeec--CCcceEEEEEEeccCCCCCeEE
Q psy7036           7 FAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPI--GTNKYLVALELDDVIETDAGLY   84 (254)
Q Consensus         7 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~i~~~~~~d~G~Y   84 (254)
                      ++|.| ....   ...+..+.|.|.+.|.|.|.++|+|||..+....+........  ........|.|.+++..|+|.|
T Consensus         3 ~pP~I-~l~~---~~~~~~~~l~c~v~G~P~P~I~W~knG~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y   78 (126)
T 1he7_A            3 MPASV-QLHT---AVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNY   78 (126)
T ss_dssp             CCCCC-CCCC---CCCCCEEEEEEEECCSSCCEEEEEETTEECCCCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEEE
T ss_pred             CCCEE-EccC---CccCccEEEEEEEeeeCCCeEEEEECCEECCCCCceeEEEeeccccccccceEEEECcCCCCCCEEE
Confidence            57775 2221   3467899999999999999999999999998776654433221  1122345899999999999999


Q ss_pred             EEEEEcCCCceEEEEEEEEec
Q psy7036          85 KVKAKNKMGEVAASINLNFSR  105 (254)
Q Consensus        85 ~C~~~~~~~~~~~~~~l~v~~  105 (254)
                      +|.|.|..|.....+.|.|..
T Consensus        79 tC~A~N~~G~~~~t~~l~v~~   99 (126)
T 1he7_A           79 TLLAANPFGQASASIMAAFMD   99 (126)
T ss_dssp             EEEEEETTEEEEEEEEECCCS
T ss_pred             EEEEEECCCeEEEEEEEEEEc
Confidence            999999999998888888864

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A

Probab=99.71  E-value=2.5e-17  Score=116.70  Aligned_cols=134  Identities=28%  Similarity=0.489  Sum_probs=97.6

Q ss_pred             CCCccccCCCeeeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCc---ceEEEcCCCCceeeEEEEccCCCCCceeE
Q psy7036         111 LAPTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKR---HKFSIDKDGHSYFASLEIIDVTIEDAGKY  187 (254)
Q Consensus       111 ~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~i~~~~~~d~G~y  187 (254)
                      .+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+.....   .......++......+.|.+++.+|+|.|
T Consensus         8 ~pp~i~~~p~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y   87 (212)
T 2v9r_A            8 FPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGVY   87 (212)
T ss_dssp             EEEEEEECCCCEEECTTCCEEECCEEEEESCCEEEEEETTEECCCTTTCTTCSEEECTTSCEEESSCCCCSSCCCSCEEE
T ss_pred             CCcceecCCCceEEeCCCcEEEEEEcCCCCCCEEEEEECCEEeeccccccccceEEecCCcEEEEEEEecCCCcccCeEE
Confidence            455566666777888999999999999999999999999988764321   11223334433333466677899999999


Q ss_pred             EEEEEcCCCcc-eEEEEEEEecCCCCCCCCCCCCeeecCCccccccCCCCcEEEEEEE-eccCCCceeC
Q psy7036         188 KVTAKNELGES-NATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRL-VGEPEPTISW  254 (254)
Q Consensus       188 ~C~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~l~C~~-~~~p~p~~~W  254 (254)
                      +|.+.|..+.. .....+.|...         ++.+...+....+..|+ .+.|.|.+ .+.|.|.++|
T Consensus        88 ~C~~~n~~g~~~~~~~~l~V~~~---------~~~~~~~~~~~~~~~g~-~~~l~C~~~~~~p~~~v~W  146 (212)
T 2v9r_A           88 VCVARNYLGEAVSHDASLEVAIL---------RDDFRQNPSDVMVAVGE-PAVMECQPPRGHPEPTISW  146 (212)
T ss_dssp             EEEEEETTEEEECCCEEEEECEE---------CSSCSBCCCCEEEETTS-CEEEECBCCCEESCCEEEE
T ss_pred             EEEEECCCCceeecceEEEEEec---------cccceeCCCceEecCCC-cEEEEEecCCCCCCCEEEE
Confidence            99999988764 34555555431         23344455566778898 99999999 8999999998

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.70  E-value=2.1e-16  Score=101.32  Aligned_cols=93  Identities=18%  Similarity=0.350  Sum_probs=74.9

Q ss_pred             CCCeeEe---CCCceeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeE
Q psy7036           7 FAPSFTQ---KPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGL   83 (254)
Q Consensus         7 ~~p~~~~---~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~   83 (254)
                      .+|.|..   .+....+.+|+++.|.|.+.|.|.+.+.|+|++..+. ..+..+...     .....|.|.+++..|+|.
T Consensus        20 ~~P~i~~~~~~~~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~-~~~~~~~~~-----~~~~~L~i~~~~~~D~G~   93 (118)
T 2e7c_A           20 EPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAPLD-TSRVHVRTS-----DFDTVFFVRQAARSDSGE   93 (118)
T ss_dssp             EEEEECCCTTTSSCEEEESSSCEEEEEEEEEESCCEEEEEETTEECC-CSSCEEEEC-----SSEEEEEESSCCTTTCEE
T ss_pred             cCCeEecCcccCCCEEEECCCEEEEEEEEccCCCCEEEEEECCEECC-CCcEEEEEC-----CCeEEEEECCCChhcCEE
Confidence            3677754   3466788999999999999999999999999999986 334433321     123379999999999999


Q ss_pred             EEEEEEcCCCceEEEEEEEEec
Q psy7036          84 YKVKAKNKMGEVAASINLNFSR  105 (254)
Q Consensus        84 Y~C~~~~~~~~~~~~~~l~v~~  105 (254)
                      |+|.+.|..|.....+.|.|.+
T Consensus        94 Y~C~a~N~~G~~~~~~~l~V~~  115 (118)
T 2e7c_A           94 YELSVQIENMKDTATIRIRVVE  115 (118)
T ss_dssp             EEEEEECSSCEECCEEEEEEEC
T ss_pred             EEEEEEeCCCeEEEEEEEEEEc
Confidence            9999999999888888888863

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.70  E-value=4e-17  Score=101.32  Aligned_cols=92  Identities=24%  Similarity=0.434  Sum_probs=75.7

Q ss_pred             CCCCCCeeEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeE
Q psy7036           4 AEDFAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGL   83 (254)
Q Consensus         4 ~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~   83 (254)
                      .+..+|.|...+....+.+|++++|.|.+.+.|.+.+.|++++..+...... .  .     .....|.|.+++..|+|.
T Consensus         7 ~~~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~g~~~~~~~~~-~--~-----~~~~~L~i~~v~~~D~G~   78 (99)
T 2yr3_A            7 GMEVAPSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARST-C--E-----AGVAELHIQDALPEDHGT   78 (99)
T ss_dssp             CCCEEEEEEECCCCEEECTTCCEEEECEEEEESCCCCEEEESSSBCSSCCCE-E--E-----TTEEEEEECSCCTTCCBC
T ss_pred             CcccCCceeecCCCCEEeCCCeEEEEEEEeeeCCCeEEEEECCEECcccceE-e--e-----CCeEEEEECCCChhhCEE
Confidence            3456889999999999999999999999999999999999999877543321 1  1     112379999999999999


Q ss_pred             EEEEEEcCCCceEEEEEEEE
Q psy7036          84 YKVKAKNKMGEVAASINLNF  103 (254)
Q Consensus        84 Y~C~~~~~~~~~~~~~~l~v  103 (254)
                      |+|.+.|..|.....+.|.|
T Consensus        79 Y~C~a~N~~g~~~~~~~l~V   98 (99)
T 2yr3_A           79 YTCLAENALGQVSCSAWVTV   98 (99)
T ss_dssp             EEEEEECSSCEEEEECCEEE
T ss_pred             EEEEEEECCCeEEEEEEEEE
Confidence            99999999998777777665

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.70  E-value=8.1e-17  Score=101.96  Aligned_cols=97  Identities=26%  Similarity=0.384  Sum_probs=79.8

Q ss_pred             CCCCCeeEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeCCEEeee-CCcceEEEeecCCcceEEEEEEeccCCCCCeE
Q psy7036           5 EDFAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSE-DTRTVMKTTPIGTNKYLVALELDDVIETDAGL   83 (254)
Q Consensus         5 ~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~   83 (254)
                      ...+|.|...+....+.+|++++|.|.+.+.|.+.+.|+|++..+.. ..++.+...    ......|.|.+++..|+|.
T Consensus         5 ~~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~~~~----~~~~~~L~i~~v~~~D~G~   80 (110)
T 2dm2_A            5 SSGAPFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRD----LDGTCSLHTTASTLDDDGN   80 (110)
T ss_dssp             CSCCCCBSSCCCCEEEETTCCEEEEEEBCCSSCCEEEEECSSCBCCTTCSSEEEEEC----TTCEEEEEESSCCTTTCSC
T ss_pred             CCCCCEEEecCcCeEEeCCCeEEEEEEEEecCCCEEEEEECCEECCCCCCeEEEEEC----CCcEEEEEECCCChhhCEE
Confidence            44689999999999999999999999999999999999999988765 333333221    1223479999999999999


Q ss_pred             EEEEEEcCCCceEEEEEEEEec
Q psy7036          84 YKVKAKNKMGEVAASINLNFSR  105 (254)
Q Consensus        84 Y~C~~~~~~~~~~~~~~l~v~~  105 (254)
                      |+|.+.|..|.....+.|.|..
T Consensus        81 Y~C~a~N~~g~~~~~~~l~V~~  102 (110)
T 2dm2_A           81 YTIMAANPQGRISCTGRLMVQA  102 (110)
T ss_dssp             CEEEEECTTCCEEECCCEEEEC
T ss_pred             EEEEEEECCCeEEEEEEEEEEC
Confidence            9999999999988888888864

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus}

Probab=99.70  E-value=3.5e-17  Score=100.72  Aligned_cols=87  Identities=25%  Similarity=0.393  Sum_probs=73.4

Q ss_pred             CCCeeEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEE
Q psy7036           7 FAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKV   86 (254)
Q Consensus         7 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C   86 (254)
                      .+|.|...+....+.+|+++.|.|.+.+.| +.+.|+|++..+....++.+.    +.     .|.|.+++..|+|.|+|
T Consensus         8 ~pp~~~~~~~~~~v~~G~~v~l~C~~~g~p-p~i~W~k~g~~~~~~~~~~~~----~~-----~L~i~~~~~~D~G~Y~C   77 (95)
T 2ckn_A            8 QPWGVPVEVESLLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLVESNRTRIT----GE-----EVEVRDSIPADSGLYAC   77 (95)
T ss_dssp             CSCCBTTBBCCEEECTTSCEEEECCEESSC-CEEEEEBTTBCCCCCSSEEEC----SS-----EEEESSCCGGGSEEEEE
T ss_pred             CCCEEEcCcceEEEcCCCeEEEEEECCCCC-CceEEEECCEecCCCCCEEEe----CC-----EEEECCCChHHCEEEEE
Confidence            467888888889999999999999999887 799999999888765543332    11     79999999999999999


Q ss_pred             EEEcCCCceEEEEEEEE
Q psy7036          87 KAKNKMGEVAASINLNF  103 (254)
Q Consensus        87 ~~~~~~~~~~~~~~l~v  103 (254)
                      .+.|..|.....+.|.|
T Consensus        78 ~a~n~~g~~~~~~~l~V   94 (95)
T 2ckn_A           78 VTSSPSGSDTTYFSVNV   94 (95)
T ss_dssp             EEEETTEEEEEEEEEEE
T ss_pred             EeccCCCcEEEEEEEEE
Confidence            99999998877777766

>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.70  E-value=1.1e-16  Score=101.00  Aligned_cols=98  Identities=24%  Similarity=0.430  Sum_probs=74.9

Q ss_pred             CCCeeEeCCCceeecCCCeEEEEEEEeeC---CCCceEEEeCCE-Eeee--CCcceEEEe-ecCCcceEEEEEEeccCCC
Q psy7036           7 FAPSFTQKPQLRQEDEGNRLIFECQLLCN---PKPDIVWFRGET-QLSE--DTRTVMKTT-PIGTNKYLVALELDDVIET   79 (254)
Q Consensus         7 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~---~~~~v~W~~~~~-~~~~--~~~~~~~~~-~~~~~~~~~~l~i~~~~~~   79 (254)
                      ..+.|+..|.++.+.+|++++|.|.+.+.   |.|.|+|||+.. .+..  ..++.+... ........+.|+|.+++..
T Consensus        11 ~~~~f~~~P~~v~V~eG~~v~L~C~v~g~~~~p~P~V~W~Kgk~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~   90 (118)
T 2edn_A           11 PTGVFLKKPDSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGARFSFKESHNSASNVYTVELHIGKVVLG   90 (118)
T ss_dssp             CSSSCSBCCCCCEEETTSCEECCEEEETTTSSSCCCCEEEETTTCCCCCSTTSSCEEEEEECSSSCEEEEEEEESSCCTT
T ss_pred             CcceEEECCCCeEEeCCCCEEEEEEEeccCCCCCCcEEEeeCCEeccCCCCccEEEeccccccccccceEEEEEeeCChh
Confidence            45678889999999999999999999874   789999999752 2221  223333221 1122234568999999999


Q ss_pred             CCeEEEEEEEcCCCceEEEEEEEEe
Q psy7036          80 DAGLYKVKAKNKMGEVAASINLNFS  104 (254)
Q Consensus        80 d~G~Y~C~~~~~~~~~~~~~~l~v~  104 (254)
                      |+|.|+|++.|..|..+..+.|.|.
T Consensus        91 D~G~Y~Cevsn~~g~~s~~~~L~V~  115 (118)
T 2edn_A           91 DRGYYRLEVKAKDTCDSCGFNIDVE  115 (118)
T ss_dssp             TCSCEEEEEECSSCEEEEEECCEEE
T ss_pred             hCEEEEEEEEEcCCcEEEEEEEEEE
Confidence            9999999999999998899999886

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A

Probab=99.69  E-value=9.2e-17  Score=99.89  Aligned_cols=92  Identities=23%  Similarity=0.451  Sum_probs=72.6

Q ss_pred             CCCeeEeCC----CceeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcce-EEEeecCCcceEEEEEEeccCCCCC
Q psy7036           7 FAPSFTQKP----QLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTV-MKTTPIGTNKYLVALELDDVIETDA   81 (254)
Q Consensus         7 ~~p~~~~~~----~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~i~~~~~~d~   81 (254)
                      .+|.|...+    ....+.+|+++.|.|.+.|.|.+.+.|++++..+....+.. .......     ..|.|.+++..|+
T Consensus         3 ~~P~~~~~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~-----~~L~i~~v~~~D~   77 (100)
T 3caf_A            3 RAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQH-----WSLIMESVVPSDK   77 (100)
T ss_dssp             EEEEESCTTTTSCCEEEECTTCCEEEECCEEEESCCEEEEEETTEECCGGGSTTCCEEEGGG-----TEEEECSCCGGGC
T ss_pred             CCCEeEcCccccccEEEecCCCEEEEEEEccccCCCEEEEEECCEEcccccccccEEEecCe-----EEEEEccCCcCCC
Confidence            467777554    45678999999999999999999999999999887654322 1111111     1799999999999


Q ss_pred             eEEEEEEEcCCCceEEEEEEEE
Q psy7036          82 GLYKVKAKNKMGEVAASINLNF  103 (254)
Q Consensus        82 G~Y~C~~~~~~~~~~~~~~l~v  103 (254)
                      |.|+|.+.|..|.....+.|.|
T Consensus        78 G~Y~C~a~N~~g~~~~~~~l~V   99 (100)
T 3caf_A           78 GNYTCVVENEYGSINHTYHLDV   99 (100)
T ss_dssp             EEEEEEEEETTEEEEEEEEEEE
T ss_pred             EEEEEEEEeCCCEEEEEEEEEE
Confidence            9999999999998887777776

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.69  E-value=7.8e-16  Score=98.02  Aligned_cols=95  Identities=19%  Similarity=0.328  Sum_probs=77.9

Q ss_pred             CCCccccCCCeeeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEE
Q psy7036         111 LAPTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVT  190 (254)
Q Consensus       111 ~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~  190 (254)
                      .+|.+...+....+..|+.+.|.|.+.+.|.+.+.|+|++..+....+..+.....    ...|.|.+++.+|+|.|+|.
T Consensus         6 ~pp~i~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~----~~~L~I~~v~~~D~G~Y~C~   81 (114)
T 2cqv_A            6 SGPQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSEN----GSKLTILAARQEHCGCYTLL   81 (114)
T ss_dssp             CCCEESCCCCSEEEETTCCEEEEEEEESSSSCEEEEEESSSBCCCSSSEEEEECSS----EEEEEETTCCTTTCEEEEEE
T ss_pred             CCCEEEeCCCCeEEeCCCeEEEEEEEEcCCCCEEEEEECCEECcCCCCEEEEEcCC----EEEEEECCCChhcCEEEEEE
Confidence            56667667777888999999999999999999999999998887655444432221    24899999999999999999


Q ss_pred             EEcCCCcceEEEEEEEecC
Q psy7036         191 AKNELGESNATISLNFDSD  209 (254)
Q Consensus       191 ~~~~~~~~~~~~~~~v~~~  209 (254)
                      |.|..|.....+.|.|...
T Consensus        82 a~N~~g~~~~~~~l~V~~~  100 (114)
T 2cqv_A           82 VENKLGSRQAQVNLTVVDK  100 (114)
T ss_dssp             EECSSCEEECCEEEEEECS
T ss_pred             EEECCCcEEEEEEEEEECC
Confidence            9999998888888888753

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens}

Probab=99.69  E-value=7.7e-17  Score=113.22  Aligned_cols=129  Identities=18%  Similarity=0.262  Sum_probs=92.7

Q ss_pred             cCCCeeeecCCCeEEEEEE-EeeCCC-CeEEEEECCEecccCCcce-EEEcCCCCceeeEEEEccCCCCCceeEEEEEEc
Q psy7036         117 KKPSIRQEDDGKRLLFECR-IQADPA-PTVIWSHSGVQVKEDKRHK-FSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKN  193 (254)
Q Consensus       117 ~~~~~~~~~~g~~~~l~C~-~~~~~~-~~~~W~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~  193 (254)
                      ..+....+.+|+.+.|.|. +.+.|. +.+.|++++..+....... .....++     .|.|.+++.+|+|.|+|.+.|
T Consensus        13 ~~~~~~~v~~G~~v~L~C~~~~~~p~~~~v~W~~~~~~~~~~~~~~~~~~~~~~-----~L~i~~v~~~d~G~Y~C~~~~   87 (201)
T 3s97_C           13 EERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNG-----NLYIANVEASDKGNYSCFVSS   87 (201)
T ss_dssp             SCCCCEEEETTCCEEECCCCCSEESSCCEEEEEESSTTCBCCCSSSEEECTTTC-----CEEESSCCGGGCEEEEEEEEE
T ss_pred             CCCceEEEECCCCEEEeccccccCCCceEEEEEECCceeeeeeCCCeEEEcCCC-----eEEECcCCcccCeEEEEEEEe
Confidence            3445677889999999999 888888 8999999987765332222 2222232     799999999999999999999


Q ss_pred             CCCcceE---EEEEEEecCCCCCCCCCCCCeeecCCccccccCCCCcEEEEEEEeccCCCceeC
Q psy7036         194 ELGESNA---TISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLVGEPEPTISW  254 (254)
Q Consensus       194 ~~~~~~~---~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~l~C~~~~~p~p~~~W  254 (254)
                      ..+....   .+.+.+......   ...+|.+...+....+.+|+ .+.|.|.+.|.|.|.+.|
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~---~~~~p~~~~~~~~~~~~~g~-~~~l~C~~~g~p~p~v~W  147 (201)
T 3s97_C           88 PSITKSVFSKFIPLIPIPERTT---KPYPADIVVQFKDVYALMGQ-NVTLECFALGNPVPDIRW  147 (201)
T ss_dssp             GGGTEEEECCCEEEEEECCSSC---CCEEEEEEEECCCEEEETTC-CEEEEEEEEEESCCEEEE
T ss_pred             cCCCcchhhcccceeecccccc---CCCCCceEecCCceEEecCC-cEEEEEEccCCCCCceEE
Confidence            7665432   233333322111   12355565555566788899 999999999999999998

>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4

Probab=99.69  E-value=1.9e-17  Score=121.93  Aligned_cols=176  Identities=15%  Similarity=0.143  Sum_probs=55.1

Q ss_pred             eCCCceeecCCCeEEEEEEEeeC-CCC--ceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEE
Q psy7036          13 QKPQLRQEDEGNRLIFECQLLCN-PKP--DIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAK   89 (254)
Q Consensus        13 ~~~~~~~v~~g~~v~l~C~~~~~-~~~--~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~   89 (254)
                      +.+....+.+|+.++|+|.+.+. |..  .|+|||+++.+......        .......|.+...+.+|.+.|+|+|.
T Consensus        91 I~~~~~~~~~G~~~~LtC~v~g~~P~~~l~itW~kg~~~l~~~~~~--------~~~~~~~l~~~~~~~D~g~~~~C~A~  162 (291)
T 1mq8_A           91 LAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAV--------GEPAEVTTTVLVRRDHHGANFSCRTE  162 (291)
T ss_dssp             BCCCCSBCCSSCCCEEEEEECCCBSTTTEEEEEESSSSEEEEEECC--------BTTEEEEEECCCSSSCSSCEEEEEEE
T ss_pred             EecCCccccCCCCEEEEEEecCccCCCCcEEEEEECCEEeecccCC--------CCCceEEEEeeeeeccCCceEEEEEE
Confidence            33333457899999999999774 443  58999999877543210        11223367777777777779999999


Q ss_pred             cCCCc--------eEEEEEEEEeccccCCCCCccccCCCeeeecCCCeEEEEEEEeeCCCC---eEEEEECCEecccCCc
Q psy7036          90 NKMGE--------VAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQADPAP---TVIWSHSGVQVKEDKR  158 (254)
Q Consensus        90 ~~~~~--------~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~---~~~W~~~~~~~~~~~~  158 (254)
                      +..+.        ......|.|..     .|+..........+.+|+.+.|.|.+.+.+++   .+.|+++|+.+.....
T Consensus       163 ~~l~~~g~~l~~~~s~~~~L~V~~-----~P~~~~~~~~p~~l~eG~~v~l~C~~~g~~P~~~~~v~w~~~g~~l~~~~~  237 (291)
T 1mq8_A          163 LDLRPQGLELFENTSAPYQLQTFV-----LPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVT  237 (291)
T ss_dssp             EECGGGTSCEEEECCCCEECBC----------------------------------------------------------
T ss_pred             ecCCccCCccccccccceEEEEEe-----cCCCCceecCCcCccCCCeEEEEEEcCCCCCCcccEEEEEECCEecCceee
Confidence            86542        23345555542     11111111112256789999999999987554   5999999988754211


Q ss_pred             ceEEEcCCCCceeeEEEEccCCC--CCceeEEEEEEcCCCcceEEEEEEEec
Q psy7036         159 HKFSIDKDGHSYFASLEIIDVTI--EDAGKYKVTAKNELGESNATISLNFDS  208 (254)
Q Consensus       159 ~~~~~~~~~~~~~~~l~i~~~~~--~d~G~y~C~~~~~~~~~~~~~~~~v~~  208 (254)
                          .  ++....+.+.+. +..  ++.+.|+|.+.+..........+.|..
T Consensus       238 ----~--~g~~~~~~~~~~-~~~~~~~~~~~~C~~~~~~~~~~~~~~l~v~~  282 (291)
T 1mq8_A          238 ----Y--GNDSFSAKASVS-VTAEDEGTQRLTCAVILGNQSQETLQTVTIYS  282 (291)
T ss_dssp             ----------------------------------------------------
T ss_pred             ----e--cCCeEEEEEecc-eeEcCCCCEEEEEEEEeCCcceEEEEEEEEEc
Confidence                1  122111122221 123  345678899887555556666677764

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}

Probab=99.69  E-value=7e-16  Score=109.26  Aligned_cols=126  Identities=21%  Similarity=0.347  Sum_probs=91.5

Q ss_pred             ecCCCeEEEEEEEeeC-CCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcceEEE
Q psy7036         124 EDDGKRLLFECRIQAD-PAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATI  202 (254)
Q Consensus       124 ~~~g~~~~l~C~~~~~-~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~  202 (254)
                      ...++.+.|.|.+.+. |.+.+.|++++..+....+..+.....    ...|.|.+++.+|+|.|+|.+.|..+....++
T Consensus        14 ~c~~~~~~l~C~~~~~~p~~~i~W~~~g~~i~~~~~~~~~~~~~----~~~L~i~~v~~~D~G~Y~C~~~n~~~~~~~~~   89 (212)
T 2r15_A           14 QSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGE----QIWLQINEPTPNDKGKYVMELFDGKTGHQKTV   89 (212)
T ss_dssp             EECSSEEEEEEEBSSCCSSCEEEEEETTEECCCCSSEEEEEETT----EEEEEEESCCGGGCEEEEEEEECSSCEEEEEE
T ss_pred             EEcCceEEEEEEEeccCCCceEEEEECCEEccCCCeEEEEEeCC----EEEEEECCCCcccCEEEEEEEecCCcceEEEE
Confidence            4467888999998875 578999999999987665554443332    13699999999999999999999888777666


Q ss_pred             EEEEecCC-----------CCCCCCCCCCeeecCCccccccCCCCcEEEEEEEeccCCCceeC
Q psy7036         203 SLNFDSDD-----------APVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLVGEPEPTISW  254 (254)
Q Consensus       203 ~~~v~~~~-----------~~~~~~~~~p~~~~~~~~~~~~~g~~~~~l~C~~~~~p~p~~~W  254 (254)
                      .+.+....           ........++.+...+....+.+|+ .+.|.|.+.|.|.|.+.|
T Consensus        90 ~l~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~-~~~l~C~~~g~p~p~v~W  151 (212)
T 2r15_A           90 DLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGK-ALNLTCNVWGDPPPEVSW  151 (212)
T ss_dssp             EECHHHHHHHHHHHHHHHHHHHHHHHSCEEEEBCCSEEEEETTC-CEEEEEEEECSSCCEEEE
T ss_pred             EEEEeeccchhhhccccCcccccccCCCcccccCCCcEEEccCC-eEEEEEEEcCCCCceEEE
Confidence            66543100           0000001134455556667788899 999999999999999998

>1hxm_A Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=99.68  E-value=1.8e-15  Score=108.18  Aligned_cols=169  Identities=14%  Similarity=0.185  Sum_probs=101.2

Q ss_pred             eeEeCCCceeecCCCeEEEEEEEeeCC--CCceEEEeCC-----EEeee---------CCcceEEEeecCCcceEEEEEE
Q psy7036          10 SFTQKPQLRQEDEGNRLIFECQLLCNP--KPDIVWFRGE-----TQLSE---------DTRTVMKTTPIGTNKYLVALEL   73 (254)
Q Consensus        10 ~~~~~~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~~-----~~~~~---------~~~~~~~~~~~~~~~~~~~l~i   73 (254)
                      .+.+.|..+.+.+|++++|.|.+.+.+  ...+.|||..     ..+..         ..++.+...   .......|.|
T Consensus         3 ~v~q~p~~v~v~~G~~vtL~C~~s~~~~~~~~v~W~rq~~g~~~~~l~~~~~~~~~~~~~R~~~~~~---~~~~~~sL~I   79 (229)
T 1hxm_A            3 ELVPEHQTVPVSIGVPATLRCSMKGEAIGNYYINWYRKTQGNTMTFIYREKDIYGPGFKDNFQGDID---IAKNLAVLKI   79 (229)
T ss_dssp             CEEESCSEEEEETTCCEEEEEEECSSCGGGSEEEEEEEESSSCSEEEEETTTEECTTTTTTEEEEEE---GGGTEEEEEE
T ss_pred             ccEeCCCEEEEcCCCCEEEEeEecCCccCcceEEEEEECCCCCcEEEEEcCCccCCCcCCeEEEEEc---CCCCEEEEEE
Confidence            356778888999999999999997543  4679999842     22211         122222211   1223458999


Q ss_pred             eccCCCCCeEEEEEEEcCC------Cc--eEEEEEEEEeccccCCCCCccccCCCeeeecCCCeEEEEEEEeeC-CCC-e
Q psy7036          74 DDVIETDAGLYKVKAKNKM------GE--VAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQAD-PAP-T  143 (254)
Q Consensus        74 ~~~~~~d~G~Y~C~~~~~~------~~--~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~-~  143 (254)
                      .+++.+|+|.|.|.+.+..      +.  ......|.|........+|.+.       +.. ....|.|.+.++ |.+ .
T Consensus        80 ~~v~~~Dsg~Y~C~~~~~~~~~~~~~~~~~g~gt~L~V~~~~~~~~~P~v~-------~~~-~~~~L~C~~~g~~P~~i~  151 (229)
T 1hxm_A           80 LAPSERDEGSYYCACDTLGMGGEYTDKLIFGKGTRVTVEPRSQPHTKPSVF-------VMK-NGTNVACLVKEFYPKDIR  151 (229)
T ss_dssp             SSCCGGGCEEEEEEEECCCCSSSCCCCCEEBCCEEEEEECCSCCCBCCEEE-------EEE-ETTEEEEEEESCBSSCCE
T ss_pred             CcCCHhHCeEEEEEEecCCCcccccchhhcCccEEEEEeccCCCCcCCcEE-------EcC-CCCeEEEEEEEEeCCCEE
Confidence            9999999999999998753      11  1123466665311111122211       111 124899999886 443 8


Q ss_pred             EEEEECCEecccCCcceEEEcCCCCceeeEEEEccC-CCCCceeEEEEEEcCCC
Q psy7036         144 VIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDV-TIEDAGKYKVTAKNELG  196 (254)
Q Consensus       144 ~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~-~~~d~G~y~C~~~~~~~  196 (254)
                      +.|+++ ..+..... ......++.     +.+... ..++.|.|+|.+.|..+
T Consensus       152 v~W~~~-~~~~~~~~-~~~~~~dg~-----y~~~~~~~~~~~~~ytC~V~h~~~  198 (229)
T 1hxm_A          152 INLVSS-KKITEFDP-AIVISPSGK-----YNAVKLGKYEDSNSVTCSVQHDNK  198 (229)
T ss_dssp             EEEECS-SEEEECCC-EEEECTTSS-----EEEEEEEEETTTTTCEEEEEETTE
T ss_pred             EEEecC-CEEecCcc-ceEECCCCc-----EEEEECcccCCCCcEEEEEEeCCC
Confidence            999999 66643322 222233332     222222 23678899999999764

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=99.68  E-value=7.1e-16  Score=95.83  Aligned_cols=94  Identities=32%  Similarity=0.514  Sum_probs=75.9

Q ss_pred             CCccccCCCeeeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEE
Q psy7036         112 APTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTA  191 (254)
Q Consensus       112 ~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~  191 (254)
                      +|.+...+....+..|+.+.|.|.+.+.|.+.+.|++++..+............++.   ..|.|.+++.+|+|.|+|.|
T Consensus         5 ~P~~~~~p~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~---~~L~i~~v~~~D~G~Y~C~a   81 (100)
T 2kdg_A            5 PPRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGL---HSLIFEVVRASDAGAYACVA   81 (100)
T ss_dssp             EEECCCCCCCEEEETTCCEEEEEECEEESCCEEEEEETTEEECCCSSSCEEEETTTE---EEEEESSCCGGGCEEEEEEE
T ss_pred             CCeEEeCCCCEEecCCCEEEEEEEEEeeCCCEEEEEECCEECcCCCcEEEEEcCCCe---EEEEECCCCcccCEEEEEEE
Confidence            444555556677889999999999999999999999999988766544444443332   37999999999999999999


Q ss_pred             EcCCCcceEEEEEEEec
Q psy7036         192 KNELGESNATISLNFDS  208 (254)
Q Consensus       192 ~~~~~~~~~~~~~~v~~  208 (254)
                      .|..|....++.|.|..
T Consensus        82 ~n~~g~~~~~~~l~V~~   98 (100)
T 2kdg_A           82 KNRAGEATFTVQLDVLA   98 (100)
T ss_dssp             EETTEEEEEEEEEEEEC
T ss_pred             EcCCCeEEEEEEEEEEe
Confidence            99999988888888763

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens}

Probab=99.68  E-value=5.1e-16  Score=94.67  Aligned_cols=84  Identities=18%  Similarity=0.330  Sum_probs=70.9

Q ss_pred             CCCeeEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEE
Q psy7036           7 FAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKV   86 (254)
Q Consensus         7 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C   86 (254)
                      ..+.|...|....+.+|++++|.|.+.|.|.+.+.|+|++..+......              .|.|.+++..|+|.|+|
T Consensus         2 ~~~~i~~~p~~~~v~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~--------------~L~i~~v~~~d~G~Y~C   67 (91)
T 3bfo_A            2 SKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETKK--------------LYMVPYVDLEHQGTYWC   67 (91)
T ss_dssp             CCCEEEECCCCEEECTTSCEEEECEEECSSCCEEEEEETTEECTTCCSS--------------EEEESSCCGGGCEEEEE
T ss_pred             CceEEEECCCccEecCCCcEEEEEEeccCCCCEEEEEcCCeeCCcCCCC--------------eEEECCCCHHhCEEEEE
Confidence            4678889999999999999999999999999999999999887654321              69999999999999999


Q ss_pred             EEEcCCCceE-EEEEEEEe
Q psy7036          87 KAKNKMGEVA-ASINLNFS  104 (254)
Q Consensus        87 ~~~~~~~~~~-~~~~l~v~  104 (254)
                      .+.|..|... ..+.|.|.
T Consensus        68 ~a~n~~g~~~s~~~~l~V~   86 (91)
T 3bfo_A           68 HVYNDRDSQDSKKVEIIID   86 (91)
T ss_dssp             EEECSSCEEECCCEEEEEC
T ss_pred             EEEcCCCCEEeeeEEEEEe
Confidence            9999988643 45666664

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4

Probab=99.68  E-value=7.5e-16  Score=95.53  Aligned_cols=93  Identities=27%  Similarity=0.411  Sum_probs=74.5

Q ss_pred             CCccccCCCeeeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEE
Q psy7036         112 APTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTA  191 (254)
Q Consensus       112 ~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~  191 (254)
                      +|.+...+....+..|+.+.|.|.+.+.|.+.+.|++++..+............++   ...|.|.+++.+|+|.|+|.|
T Consensus         5 ~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~~~~~~---~~~L~i~~v~~~D~G~Y~C~a   81 (99)
T 1g1c_A            5 APKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDN---VCELVIRDVTGEDSASIMVKA   81 (99)
T ss_dssp             EEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEEEETT---EEEEEECSCCGGGCEEEEEEE
T ss_pred             CCceEecCcceEEcCCCcEEEEEEEEEeCCCEEEEEECCEECCCCCCEEEEEcCCC---EEEEEECCCCcCCCEEEEEEE
Confidence            34444555667788999999999999999999999999998876554443322222   237999999999999999999


Q ss_pred             EcCCCcceEEEEEEEe
Q psy7036         192 KNELGESNATISLNFD  207 (254)
Q Consensus       192 ~~~~~~~~~~~~~~v~  207 (254)
                      .|..|....++.|.|.
T Consensus        82 ~N~~g~~~~~~~l~V~   97 (99)
T 1g1c_A           82 INIAGETSSHAFLLVQ   97 (99)
T ss_dssp             EETTEEEEEEEEEEEE
T ss_pred             EECCCcEEEEEEEEEe
Confidence            9999988888888775

>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens}

Probab=99.68  E-value=1e-16  Score=112.27  Aligned_cols=126  Identities=15%  Similarity=0.170  Sum_probs=80.6

Q ss_pred             CCccccCCCeeeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEE
Q psy7036         112 APTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTA  191 (254)
Q Consensus       112 ~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~  191 (254)
                      +|.+...+. ..+.+|+.++|.|.+.+.+. .+.|+|++..+.......     ........|.|.+++.+|+|.|+|.+
T Consensus         5 ~P~i~~~p~-~~v~~G~~v~L~C~~~~~~~-~~~W~k~g~~~~~~~~~~-----~~~~~~~~L~i~~v~~~D~G~Y~C~a   77 (196)
T 2d3v_A            5 KATLWAEPG-SVISRGNSVTIRCQGTLEAQ-EYRLVKEGSPEPWDTQNP-----LEPKNKARFSIPSMTEHHAGRYRCYY   77 (196)
T ss_dssp             BCEEEEESC-SEEETTCCEEEEEECCTTCC-EEEEEETTCSSCSEEECC-----CSSTTEEEEEESSCCGGGCEEEEEEE
T ss_pred             CCEEEeCCC-CcccCCCeEEEEEeCCCCCc-EEEEEECCCCCCcccccc-----cCCccccEEEeccCChhHCeEEEEEE
Confidence            344443343 36778999999999887765 999999987664221100     00111237999999999999999999


Q ss_pred             EcCCCcc--eEEEEEEEecCCCCCCCCCCCCeeecCCccccccCCCCcEEEEEEEeccCCCceeC
Q psy7036         192 KNELGES--NATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLVGEPEPTISW  254 (254)
Q Consensus       192 ~~~~~~~--~~~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~l~C~~~~~p~p~~~W  254 (254)
                      .|..+..  +..+.|.|...       ..+|.+...+. ..+.+|+ .++|.|.+.+.| +.+.|
T Consensus        78 ~n~~g~~~~s~~~~l~V~~~-------~~~p~i~~~~~-~~v~~G~-~v~L~C~~~~~p-~~~~W  132 (196)
T 2d3v_A           78 YSPAGWSEPSDPLELVVTGF-------YNKPTLSALPS-PVVTSGE-NVTLQCGSRLRF-DRFIL  132 (196)
T ss_dssp             EETTEECBCCCCEEEEEECS-------SCCCEEEC-------------CEEEEEESSCC-SEEEE
T ss_pred             eCCCCcCCcCccEEEEecCC-------CCCCeEEccCC-ccccCCC-cEEEEEEcCCCC-CEEEE
Confidence            9987643  34566666641       12466665544 4678898 999999999998 88888

>2lu7_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=99.68  E-value=3.3e-16  Score=93.51  Aligned_cols=80  Identities=18%  Similarity=0.276  Sum_probs=63.8

Q ss_pred             CCceeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcCCCc
Q psy7036          15 PQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGE   94 (254)
Q Consensus        15 ~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~   94 (254)
                      +..+.+.+|+++.|.|.+.+ |.+.++|+|||..+....++.+...  +   ..+.|.|.+++..|+|.|+|.+.|    
T Consensus         3 lt~v~~~~G~~v~l~C~vs~-p~p~v~W~k~g~~l~~~~~~~~~~~--~---~~~~L~I~~~~~~D~G~Y~C~a~n----   72 (84)
T 2lu7_A            3 MTRVRSTPGGDLELVVHLSG-PGGPVRWYKDGERLASQGRVQLEQA--G---ARQVLRVQGARSGDAGEYLCDAPQ----   72 (84)
T ss_dssp             CCCEEECTTSCEEEECCCSC-CSTTCEEEETTEECCCCSSEEEEEC--S---SCEEEEESSCSSTTCEEEEEECTT----
T ss_pred             CeEEEEecCCCEEEEEEECC-CCcEEEEEECCEEccccccEEEeec--C---CeEEEEecCCCCcccEEEEEEECC----
Confidence            35678899999999999975 8889999999999988777655432  2   223799999999999999998754    


Q ss_pred             eEEEEEEEEe
Q psy7036          95 VAASINLNFS  104 (254)
Q Consensus        95 ~~~~~~l~v~  104 (254)
                      ....+.|.|.
T Consensus        73 ~~~~a~l~V~   82 (84)
T 2lu7_A           73 DSRIFLVSVE   82 (84)
T ss_dssp             TCEEEEEEEC
T ss_pred             EEEEEEEEEE
Confidence            4556677774

>3u1s_H FAB PGT145 heavy chain; IGG, broadly neutralizing antibody, HIV-1 GP120, immune SYST; HET: TYS; 2.30A {Homo sapiens}

Probab=99.68  E-value=1.2e-15  Score=111.89  Aligned_cols=185  Identities=12%  Similarity=0.212  Sum_probs=107.5

Q ss_pred             CCceeecCCCeEEEEEEEee--CCCCceEEEeCC-----EEe-ee-----------CCcceEEEeecCCcceEEEEEEec
Q psy7036          15 PQLRQEDEGNRLIFECQLLC--NPKPDIVWFRGE-----TQL-SE-----------DTRTVMKTTPIGTNKYLVALELDD   75 (254)
Q Consensus        15 ~~~~~v~~g~~v~l~C~~~~--~~~~~v~W~~~~-----~~~-~~-----------~~~~~~~~~~~~~~~~~~~l~i~~   75 (254)
                      +....+.+|++|+|.|.+.+  .....+.|||..     ..+ ..           ....++....+. .....+|.|.+
T Consensus        30 ~~~~~~~~G~~v~L~C~~s~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~-~~~~~sL~I~~  108 (267)
T 3u1s_H           30 SGAEVKKPGSSVKVSCKASGNSFSNHDVHWVRQATGQGLEWMGWMSHEGDKTGLAQKFQGRVTITRDS-GASTVYMELRG  108 (267)
T ss_dssp             CCCEEECTTCCEEEEEEEGGGGGGTSEEEEEEECTTSCCEEEEEECTTSSCEEECGGGTTTEEEEECG-GGCCEEEEECS
T ss_pred             eCCEEEeCCCcEEEEEEeeCCccCCCEEEEEEECCCCCcEEEEEEeCCCCceecCcccCCcEEEEEcC-CCCEEEEEECC
Confidence            34578999999999999965  235689999732     111 10           001122221111 22345799999


Q ss_pred             cCCCCCeEEEEEEEcC------CC------------c-------eEEEEEEEEeccccCCCCCccccCCCeeeecCCCeE
Q psy7036          76 VIETDAGLYKVKAKNK------MG------------E-------VAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRL  130 (254)
Q Consensus        76 ~~~~d~G~Y~C~~~~~------~~------------~-------~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~  130 (254)
                      ++.+|+|.|.|.+.+.      .+            .       ......|.|...  ...+|.+...........|..+
T Consensus       109 v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~l~V~~~--~~~~P~v~~~~~~~~~~~g~~~  186 (267)
T 3u1s_H          109 LTADDTAIYYCLTGSKHRLRDYFLYNEYGPNYEEWGDYLATLDVWGHGTAVTVSSA--STKGPSVFPLAPSSKSTSGGTA  186 (267)
T ss_dssp             CCGGGCEEEEEEEEEEEEEEEEEECCTTSSCEEEEEEEEEEEEEECCCEEEEECCC--CCBCCEEEEECCCGGGEETTEE
T ss_pred             CChhhCEEEEEEECcCCcccccccccccccccccccccccccceecCCeEEEecCC--CCCCCEEEEecCCcccCCCCcE
Confidence            9999999999998620      00            0       111334555421  1123333321111223468999


Q ss_pred             EEEEEEeeC-C-CCeEEEEECCEecccCCc-ceEEEcCCC-CceeeEEEEccCCCCCceeEEEEEEcCCCcceEEEEEE
Q psy7036         131 LFECRIQAD-P-APTVIWSHSGVQVKEDKR-HKFSIDKDG-HSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLN  205 (254)
Q Consensus       131 ~l~C~~~~~-~-~~~~~W~~~~~~~~~~~~-~~~~~~~~~-~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~  205 (254)
                      .|.|.+.+. | .+.+.|  ++..+..... .......++ +...+.|.|.....+| +.|+|.+.+..+.......+.
T Consensus       187 ~l~C~~~~~~p~~~~v~W--~~~~~~~~~~~~~~~~~~~g~y~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~~~~~  262 (267)
T 3u1s_H          187 ALGCLVKDYFPEPVTVSW--NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKVE  262 (267)
T ss_dssp             EEEEEEEEEBSSCCEEEE--GGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGGGT-CCCEEEEEEGGGTEEEEEECC
T ss_pred             EEEEEEeEEECCCeEEEE--CCcccCCCEEeCCceECCCCCEEEEEEEEECchhcCC-CEEEEEEEECCCCcceEEEcc
Confidence            999998874 4 457999  5544432111 111122222 2344678998888888 999999999876655554443

>2lvc_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=99.67  E-value=2.5e-16  Score=95.55  Aligned_cols=86  Identities=13%  Similarity=0.258  Sum_probs=64.8

Q ss_pred             CCeeEeCCCcee--ecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEE
Q psy7036           8 APSFTQKPQLRQ--EDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYK   85 (254)
Q Consensus         8 ~p~~~~~~~~~~--v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~   85 (254)
                      ||.|..+++...  +.+|+++.|.|.+.+ |.+.++|+|||..+....++.+...  +   ..+.|.|.+++.+|+|.|+
T Consensus         4 P~~i~~p~~~~~v~~~~g~~v~l~C~v~~-p~~~v~W~k~g~~i~~~~~~~i~~~--~---~~~~L~I~~v~~~D~G~Y~   77 (91)
T 2lvc_A            4 PVHIVDPREHVFVHAITSECVMLACEVDR-EDAPVRWYKDGQEVEESDFVVLENE--G---PHRRLVLPATQPSDGGEFQ   77 (91)
T ss_dssp             CCCCCBCCSCEEEECCTTCCEEEEEECSC-TTSCCEEEETTSCCCCCSSCEEEEE--T---TEEEEEESSCCGGGCSEEE
T ss_pred             CcEEeccCCCeEEEEECCCcEEEEEEECC-CCcEEEEEECCEEeeeeeeeeEEec--C---CeEEEEeCCCChhhcEEEE
Confidence            555665555544  468999999999965 8889999999999988777665433  1   2337999999999999999


Q ss_pred             EEEEcCCCceEEEEEEEE
Q psy7036          86 VKAKNKMGEVAASINLNF  103 (254)
Q Consensus        86 C~~~~~~~~~~~~~~l~v  103 (254)
                      |.|.|.    ..++.|.|
T Consensus        78 C~a~n~----~~~~~ltV   91 (91)
T 2lvc_A           78 CVAGDE----CAYFTVTI   91 (91)
T ss_dssp             EECSSC----EEEEEEEC
T ss_pred             EEEcce----EEEEEEEC
Confidence            998653    44555543

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.67  E-value=1.3e-15  Score=95.11  Aligned_cols=91  Identities=16%  Similarity=0.262  Sum_probs=70.3

Q ss_pred             CCCeeEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEE
Q psy7036           7 FAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKV   86 (254)
Q Consensus         7 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C   86 (254)
                      .++.|...+....+.+|++++|.|.+.+ +.+.+.|+|++..+....+.++.....+   ....|.|.+++..|+|.|+|
T Consensus         6 ~p~~~~~~~~~~~v~~G~~v~l~C~~~~-~~~~v~W~k~g~~l~~~~~~~~~~~~~~---~~~~L~I~~~~~~D~G~Y~C   81 (103)
T 1x44_A            6 SGIMVTKQLEDTTAYCGERVELECEVSE-DDANVKWFKNGEEIIPGPKSRYRIRVEG---KKHILIIEGATKADAAEYSV   81 (103)
T ss_dssp             SSCCCSBCCCCEEEETTEEEEEEEECSS-SSCCCEEEETTEECCCSTTCSEEEEEET---TEEEEEEEEECTTTCSEEEE
T ss_pred             CCceeeccCCCEEEECCCCEEEEEEecC-CCCeEEEEECCEECCCCCceEEEEEEcC---CEEEEEECCCCcccCEEEEE
Confidence            3445888889999999999999999976 6689999999999877663322222222   13379999999999999999


Q ss_pred             EEEcCCCceEEEEEEEEec
Q psy7036          87 KAKNKMGEVAASINLNFSR  105 (254)
Q Consensus        87 ~~~~~~~~~~~~~~l~v~~  105 (254)
                      .+.|    ....+.|.|..
T Consensus        82 ~a~n----~~~~~~l~V~~   96 (103)
T 1x44_A           82 MTTG----GQSSAKLSVDL   96 (103)
T ss_dssp             EETT----EEEEEEEEEEC
T ss_pred             EECC----CcEEEEEEEeC
Confidence            9986    45667777763

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A

Probab=99.67  E-value=2e-15  Score=93.72  Aligned_cols=91  Identities=23%  Similarity=0.401  Sum_probs=73.1

Q ss_pred             CCCCCeeEeCCCc-eeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeE
Q psy7036           5 EDFAPSFTQKPQL-RQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGL   83 (254)
Q Consensus         5 ~~~~p~~~~~~~~-~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~   83 (254)
                      ...+|.|...+.. ..+.+|++++|.|.+. .|.+.+.|||++..+....++.+...  +   ....|.|.+++..|+|.
T Consensus         4 g~~~p~~~~~~~~~~~v~~G~~v~l~C~~~-~p~~~v~W~k~g~~i~~~~~~~~~~~--~---~~~~L~I~~~~~~D~G~   77 (100)
T 2yuv_A            4 GSSGAAFAKILDPAYQVDKGGRVRFVVELA-DPKLEVKWYKNGQEIRPSTKYIFEHK--G---CQRILFINNCQMTDDSE   77 (100)
T ss_dssp             SSSSCCEEECCCSCEEECTTEEEEEEEEES-CTTSCEEEEESSCBCCCBTTEEEEEE--T---TEEEEEEEEECTTTCCE
T ss_pred             CCCCCeEEecCCCccEEcCCCcEEEEEEec-CCCceEEEEECCEECCCCCCEEEEec--C---CEEEEEEcCCCcCcCEE
Confidence            3458899988877 5789999999999998 78899999999998877666554422  1   12379999999999999


Q ss_pred             EEEEEEcCCCceEEEEEEEEec
Q psy7036          84 YKVKAKNKMGEVAASINLNFSR  105 (254)
Q Consensus        84 Y~C~~~~~~~~~~~~~~l~v~~  105 (254)
                      |+|.+    +.....+.|.|.+
T Consensus        78 Y~C~a----g~~~~~~~l~V~~   95 (100)
T 2yuv_A           78 YYVTA----GDEKCSTELFVRS   95 (100)
T ss_dssp             EEEEE----TTEEEEEEEEECC
T ss_pred             EEEEE----CCceEEEEEEEec
Confidence            99999    5566778888863

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}

Probab=99.66  E-value=2.1e-16  Score=110.66  Aligned_cols=126  Identities=16%  Similarity=0.224  Sum_probs=87.1

Q ss_pred             CCccccCCCeeeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEE
Q psy7036         112 APTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTA  191 (254)
Q Consensus       112 ~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~  191 (254)
                      +|.+...+.. .+.+|+.++|.|.+.+ +.+.+.|+|++..+.......  ..   ......|.|.+++.+|+|.|+|.+
T Consensus         5 ~P~i~~~p~~-~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~~--~~---~~~~~~L~i~~v~~~D~G~Y~C~a   77 (196)
T 3p2t_A            5 KPTLWAEPGS-VISWGNSVTIWCQGTL-EAREYRLDKEESPAPWDRQNP--LE---PKNKARFSIPSMTEDYAGRYRCYY   77 (196)
T ss_dssp             CCEEEEESCS-EEETTCCEEEEEECCT-TCCEEEEEETTSCSCSEEECC--CS---SSSEEEEEESSCCGGGCEEEEEEE
T ss_pred             CCEEEccCCC-cCCCCCcEEEEeeCCC-CCCEEEEEECCCCCccccccc--cc---CCceEEEEeccCCcccCceEEEEE
Confidence            3444444444 6778999999999877 678999999987764321100  00   011237999999999999999999


Q ss_pred             EcCCCc--ceEEEEEEEecCCCCCCCCCCCCeeecCCccccccCCCCcEEEEEEEeccCCCceeC
Q psy7036         192 KNELGE--SNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLVGEPEPTISW  254 (254)
Q Consensus       192 ~~~~~~--~~~~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~l~C~~~~~p~p~~~W  254 (254)
                      .|..+.  ....+.|.|...       ..+|.+...+.. .+.+|+ .++|.|.+.+.| +.+.|
T Consensus        78 ~n~~g~~~~s~~~~l~V~~~-------~~~p~~~~~~~~-~v~~G~-~v~L~C~~~~~~-~~~~w  132 (196)
T 3p2t_A           78 RSPVGWSQPSDPLELVMTGA-------YSKPTLSALPSP-LVTSGK-SVTLLCQSRSPM-DTFLL  132 (196)
T ss_dssp             EETTEEBCCCCCEEEEEECS-------SCCCEEEEESCS-EECTTC-CEEEEEEEEEEE-EEEEE
T ss_pred             eCCCcccCCCccEEEEecCC-------CCCCEEEeCCcc-eecCCC-eEEEEEecCCCC-CEEEE
Confidence            998872  355566666531       225666655554 567898 999999998744 46666

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.66  E-value=1.4e-15  Score=97.45  Aligned_cols=92  Identities=21%  Similarity=0.417  Sum_probs=75.4

Q ss_pred             CCCccccCCCeeeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEE
Q psy7036         111 LAPTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVT  190 (254)
Q Consensus       111 ~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~  190 (254)
                      .+|.+...+....+..|+.+.|.|.+.+.|.+.+.|++++..+...... +....++     .|.|.+++.+|+|.|+|.
T Consensus         7 ~pP~i~~~p~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~g~~~~~~~~~-~~~~~~~-----~L~i~~v~~~D~G~Y~C~   80 (118)
T 2eo9_A            7 GPPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSR-IKQLENG-----VLQIRYAKLGDTGRYTCI   80 (118)
T ss_dssp             CSCCCSBCCCCEEEETTCEEEEECBCCCSSCCEEEEEESSSBCCTTSTT-EEEEETT-----EEEEESCCGGGCCCEEEE
T ss_pred             CCCEEEcCCCCEEEcCCCeEEEEEEEEecCCCEEEEEECCEECcCCCCe-EEEccCC-----EEEEccCCcCCCEEEEEE
Confidence            5666776777788899999999999999999999999999887643322 2223333     799999999999999999


Q ss_pred             EEcCCCcceEEEEEEEec
Q psy7036         191 AKNELGESNATISLNFDS  208 (254)
Q Consensus       191 ~~~~~~~~~~~~~~~v~~  208 (254)
                      |.|..|.....+.|.|..
T Consensus        81 a~n~~g~~~~~~~l~V~~   98 (118)
T 2eo9_A           81 ASTPSGEATWSAYIEVQE   98 (118)
T ss_dssp             EECSSCEEEEECCEEEEC
T ss_pred             EEcCCCcEEEEEEEEEEe
Confidence            999999888888888875

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens}

Probab=99.66  E-value=1.3e-15  Score=93.70  Aligned_cols=88  Identities=24%  Similarity=0.398  Sum_probs=71.1

Q ss_pred             CCCeeEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEE
Q psy7036           7 FAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKV   86 (254)
Q Consensus         7 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C   86 (254)
                      ..|.|...+....+.+|+++.|.|.+ +.+.+.+.|+|++..+....++.+...  +   ....|.|.+++..|+|.|+|
T Consensus         7 ~~~~~~~~~~~~~v~~G~~v~l~C~~-~~p~~~v~W~k~~~~l~~~~~~~~~~~--~---~~~~L~I~~v~~~D~G~Y~C   80 (95)
T 2k1m_A            7 PVSAFSKKPRSVEVAAGSPAVFEAET-ERAGVKVRWQRGGSDISASNKYGLATE--G---TRHTLTVREVGPADQGSYAV   80 (95)
T ss_dssp             CCCCCSBCCCCEEEETTSCEEEEEEC-SSSSCCCEEECSSSEECSSTTCEEEEE--T---TEEEEEESSCCTTCCSEEEE
T ss_pred             CCCeeEeCCCcEEEeCCCcEEEEEEe-CCCCCeEEEEECCEECCCCCcEEEEEc--C---CEEEEEEcCCCcccCEEEEE
Confidence            35788888999999999999999999 688889999999999877666655432  1   13379999999999999999


Q ss_pred             EEEcCCCceEEEEEEEEe
Q psy7036          87 KAKNKMGEVAASINLNFS  104 (254)
Q Consensus        87 ~~~~~~~~~~~~~~l~v~  104 (254)
                      .+    |.....+.|.|.
T Consensus        81 ~a----g~~~~~~~l~V~   94 (95)
T 2k1m_A           81 IA----GSSKVKFDLKVI   94 (95)
T ss_dssp             EE----TTEEEEEEEEEE
T ss_pred             EE----CCceEEEEEEEe
Confidence            99    445566777764

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*

Probab=99.66  E-value=7.5e-16  Score=108.48  Aligned_cols=113  Identities=13%  Similarity=0.257  Sum_probs=84.6

Q ss_pred             ccccCCCeeeecCCCeEEEEEEEeeCCCCe-EEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEE
Q psy7036         114 TFLKKPSIRQEDDGKRLLFECRIQADPAPT-VIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAK  192 (254)
Q Consensus       114 ~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~-~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~  192 (254)
                      .+...+....+.+|+.+.|.|.+.+.+.+. +.|++++..+....              ..|.|.+++.+|+|.|+|.+.
T Consensus         9 ~i~~~p~~~~v~~G~~v~L~C~~~~~p~~~~v~W~k~g~~l~~~~--------------~~L~i~~v~~~D~G~Y~C~a~   74 (204)
T 3sgj_C            9 VVFLEPQWYRVLEKDSVTLKCQGAYSPEDQSTQWFHNESLISSQA--------------SSYFIDAATVDDSGEYRCQTQ   74 (204)
T ss_dssp             EEEEESCCSEEETTCCEEEEEECCSSSSCCCEEEEETTEEESCCS--------------SEEEESSCCGGGCEEEEEEET
T ss_pred             eEEEcCCCeEEECCCCEEEEEcCCCCCCCcEEEEEECCEEcccCc--------------cEEEEecccccCCEEEEEEeC
Confidence            333444445678999999999999988775 99999998775432              279999999999999999998


Q ss_pred             cCCCcceEEEEEEEecCCCCCCCCCCCCeeecCCccccccCCCCcEEEEEEEecc-CCCceeC
Q psy7036         193 NELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLVGE-PEPTISW  254 (254)
Q Consensus       193 ~~~~~~~~~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~l~C~~~~~-p~p~~~W  254 (254)
                      |..  ....+.|.|..          +|.+...+. ..+.+|+ .+.|.|.+.+. |.+.+.|
T Consensus        75 n~~--~s~~~~l~V~~----------~p~~~~~~~-~~v~~G~-~v~L~C~~~~~~p~~~v~W  123 (204)
T 3sgj_C           75 LST--LSDPVQLEVHI----------GWLLLQAPR-WVFKEED-PIHLRCHSWKNTALHKVTY  123 (204)
T ss_dssp             TSB--CCCCEEEEEEC----------SSEEEECSC-SEEETTC-CEEEEEEEGGGCCCEEEEE
T ss_pred             CCc--ccccEEEEEec----------CceEecCCc-eeEeCCC-cEEEEEEecCCCCCceEEE
Confidence            743  34455566653          344544444 5677898 99999999766 5577888

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A

Probab=99.66  E-value=8.8e-16  Score=94.02  Aligned_cols=89  Identities=22%  Similarity=0.344  Sum_probs=70.1

Q ss_pred             CCccccCCCeeeecCCCeEEEEEEEeeCCCCeEEEEECC--EecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEE
Q psy7036         112 APTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSG--VQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKV  189 (254)
Q Consensus       112 ~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C  189 (254)
                      +|.+...+....+..|+.+.|.|.+.|.|.|.+.|++++  ..+....  .......    .+.|.|.++..+|+|.|+|
T Consensus         2 ~P~i~~~~~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~~~~~~~~~~~--~~~~~~~----~~~L~i~~~~~~D~G~Y~C   75 (93)
T 1wit_A            2 KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPEL--LVDAKSS----TTSIFFPSAKRADSGNYKL   75 (93)
T ss_dssp             CCEECCCCCEEEECTTBCCEEEEEEECCSSCEEEEECSTTTCBCSTTS--EEEEETT----EEEEECTTBCGGGCEEEEE
T ss_pred             CCeEEcCCCceEEeCCCEEEEEEEEEEcCCCEEEEEECCCCcccCCcE--EEEecCC----EEEEEECCCChhcCEEEEE
Confidence            344544556778889999999999999999999999999  7765432  2222111    2479999999999999999


Q ss_pred             EEEcCCCcceEEEEEEE
Q psy7036         190 TAKNELGESNATISLNF  206 (254)
Q Consensus       190 ~~~~~~~~~~~~~~~~v  206 (254)
                      .|.|..|....++.|.|
T Consensus        76 ~a~N~~G~~~~~~~l~V   92 (93)
T 1wit_A           76 KVKNELGEDEAIFEVIV   92 (93)
T ss_dssp             EEEETTEEEEEEEEEEE
T ss_pred             EEEcCCCeEEEEEEEEE
Confidence            99999998888877766

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens}

Probab=99.65  E-value=1.8e-15  Score=94.46  Aligned_cols=93  Identities=25%  Similarity=0.474  Sum_probs=75.2

Q ss_pred             CCccccCCCeeeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEE
Q psy7036         112 APTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTA  191 (254)
Q Consensus       112 ~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~  191 (254)
                      +|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+.......+.....    ...|.|.++..+|.|.|+|.|
T Consensus         8 ~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~----~~~L~i~~~~~~D~G~Y~C~a   83 (103)
T 3qp3_A            8 APRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNTSG----VLTLEILDCHTDDSGTYRAVC   83 (103)
T ss_dssp             EEEEEECCCCEEEETTCCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEEETT----EEEEEECSCCGGGCEEEEEEE
T ss_pred             CCEEEeCCcceEEeCCCeEEEEEEEEecCCCEEEEEECCEECCCCCCEEEEECCC----EEEEEEcCCCcccCEEEEEEE
Confidence            4445555566778899999999999999999999999999987665544432222    137999999999999999999


Q ss_pred             EcCCCcceEEEEEEEec
Q psy7036         192 KNELGESNATISLNFDS  208 (254)
Q Consensus       192 ~~~~~~~~~~~~~~v~~  208 (254)
                      .|..|.......|.|..
T Consensus        84 ~N~~G~~~~~~~l~V~~  100 (103)
T 3qp3_A           84 TNYKGEASDYATLDVTG  100 (103)
T ss_dssp             EETTEEEEEEEEEEEEC
T ss_pred             EeCCCcEEEEEEEEEEC
Confidence            99999988888888864

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae}

Probab=99.65  E-value=1.4e-15  Score=110.45  Aligned_cols=124  Identities=15%  Similarity=0.273  Sum_probs=87.4

Q ss_pred             CeeeecCCCeEEEEEEEee---CCCCeEEEEECCEecc----------------------------cCCcceEEEcCCCC
Q psy7036         120 SIRQEDDGKRLLFECRIQA---DPAPTVIWSHSGVQVK----------------------------EDKRHKFSIDKDGH  168 (254)
Q Consensus       120 ~~~~~~~g~~~~l~C~~~~---~~~~~~~W~~~~~~~~----------------------------~~~~~~~~~~~~~~  168 (254)
                      ..+.+.+|+.+.|.|.+.+   .+.+.+.|++++....                            .....+.....++ 
T Consensus        10 ~~v~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~-   88 (250)
T 2fbo_J           10 TEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGDFLGRASVANLA-   88 (250)
T ss_dssp             SEEEECTTSCEEECCEEEECSCCSCCEEEEEEEEETTEEEEEEEEEECCCBTTBCCCTTSEEEEECGGGTTTEECSCTT-
T ss_pred             CceEEecCCeEEEEEEeEcCCCCCceEEEEEeCCCCCccEEEEeeccccccccccccccccccccCCCcCceEEeccCC-
Confidence            4567889999999999987   7888999999874320                            0001111111111 


Q ss_pred             ceeeEEEEccCCCCCceeEEEEEEcCCCcc-----eEEEEEEEecCCCCCCCCCCCCeee-cCCccccccCCCCcEEEEE
Q psy7036         169 SYFASLEIIDVTIEDAGKYKVTAKNELGES-----NATISLNFDSDDAPVPGEGTKPVFT-ERPVTKQSDDDLNDIVIEC  242 (254)
Q Consensus       169 ~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~-----~~~~~~~v~~~~~~~~~~~~~p~~~-~~~~~~~~~~g~~~~~l~C  242 (254)
                        ...|.|.+++.+|+|.|+|.+.|..+..     ...+.|.|.....       +|.+. ..+....+.+|+ .+.|.|
T Consensus        89 --~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~-------~~~~~~~~~~~~~v~~g~-~v~L~C  158 (250)
T 2fbo_J           89 --APTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHTP-------SNNVHVSTAEVVQVDEGN-DITMTC  158 (250)
T ss_dssp             --SCCEEECSCCGGGCEEEEEEEECTTCCSGGGEEEEEEEEEETTTSC-------CSCCEECCCSEEECCTTC-CEEECC
T ss_pred             --cceEEEeeCChhhCeEEEEEeccCccCCcccccceeEEEEEeccCC-------CCeEEEecCceEEecCCC-cEEEEE
Confidence              1379999999999999999999987643     3467777764211       22222 334556677898 999999


Q ss_pred             EEeccCCCceeC
Q psy7036         243 RLVGEPEPTISW  254 (254)
Q Consensus       243 ~~~~~p~p~~~W  254 (254)
                      .+.+.|.|.++|
T Consensus       159 ~~~g~p~p~v~W  170 (250)
T 2fbo_J          159 PCTDCANANVTW  170 (250)
T ss_dssp             CEESCTTCEEEE
T ss_pred             EecCCCCCeeEE
Confidence            999999999998

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens}

Probab=99.65  E-value=1.6e-15  Score=94.08  Aligned_cols=93  Identities=27%  Similarity=0.464  Sum_probs=72.4

Q ss_pred             CCccccCCCeeeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEE
Q psy7036         112 APTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTA  191 (254)
Q Consensus       112 ~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~  191 (254)
                      +|.+...+....+..|+.+.|.|.+.+.|.+.+.|++++..+........ ...++.  .+.|.|.+++.+|+|.|+|.|
T Consensus         5 ~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~~~~~~~~~~~~~-~~~~~~--~~~L~i~~~~~~D~G~Y~C~a   81 (99)
T 1u2h_A            5 PPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFA-EEAEGG--LCRLRILAAERGDAGFYTCKA   81 (99)
T ss_dssp             EEEEEECCCCEEEETTCCEEEEEEEEEESCCEEEEEETTEECCCBTTEEE-EECGGG--EEEEEESSCCGGGCEEEEEEE
T ss_pred             CCEEEEcCCceEecCCCEEEEEEEEEEcCCCEEEEEECCEECCCCCCEEE-EECCCC--EEEEEEccCCcCCCEEEEEEE
Confidence            34444455566788999999999999999999999999998865543222 222221  237999999999999999999


Q ss_pred             EcCCCcceEEEEEEEe
Q psy7036         192 KNELGESNATISLNFD  207 (254)
Q Consensus       192 ~~~~~~~~~~~~~~v~  207 (254)
                      .|..|.....+.|.|.
T Consensus        82 ~N~~g~~~~~~~l~V~   97 (99)
T 1u2h_A           82 VNEYGARQCEARLEVR   97 (99)
T ss_dssp             EETTEEEEEEEEEEEE
T ss_pred             EECCCceeEEEEEEEE
Confidence            9999988888888775

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4

Probab=99.65  E-value=3.4e-15  Score=95.66  Aligned_cols=100  Identities=19%  Similarity=0.269  Sum_probs=76.3

Q ss_pred             CCCCCCCCeeEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCC
Q psy7036           2 GIAEDFAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDA   81 (254)
Q Consensus         2 ~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~   81 (254)
                      .+.+..+|.+...... .  ..+...|.|.+.|.|.+.++|+|+|..+....+......... ......|.|.+++..|+
T Consensus         2 ~L~V~~pP~i~~~~~~-~--~~~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~-~~~~~~L~i~~~~~~d~   77 (118)
T 1wwc_A            2 ALTVYYPPRVVSLEEP-E--LRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEG-EISEGCLLFNKPTHYNN   77 (118)
T ss_dssp             --CCCCCCCCCCCCCC-C--CCCEEEEEEEEECSSCCEEEEEETTEECCCSSSEEEEEEECS-SEEEEEEEEESCCGGGC
T ss_pred             EEEEecCCceeccCCC-e--eccceEEEEEeeeeCCCeEEEEECCEECCCCCceeEEEeccC-ccccEEEEECCCChhcC
Confidence            5677788887655332 2  336788999999999999999999999987665554433221 12344899999999999


Q ss_pred             eEEEEEEEcCCCceEEEEEEEEec
Q psy7036          82 GLYKVKAKNKMGEVAASINLNFSR  105 (254)
Q Consensus        82 G~Y~C~~~~~~~~~~~~~~l~v~~  105 (254)
                      |.|+|.+.|..|.....+.|.|..
T Consensus        78 G~Y~C~a~N~~G~~~~~~~l~v~~  101 (118)
T 1wwc_A           78 GNYTLIAKNPLGTANQTINGHFLK  101 (118)
T ss_dssp             EEEEEEEEETTEEEEEEEEECCSC
T ss_pred             EEEEEEEECCCCeEeeEEEEEEcc
Confidence            999999999999988888887763

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G

Probab=99.65  E-value=2.4e-16  Score=111.33  Aligned_cols=123  Identities=15%  Similarity=0.272  Sum_probs=87.5

Q ss_pred             cccCCCeeeecCCCeEEEEEEEeeCCCCeEEEEECCEecc----------cCCcceEEEcCCCCceeeEEEEccCCCCCc
Q psy7036         115 FLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVK----------EDKRHKFSIDKDGHSYFASLEIIDVTIEDA  184 (254)
Q Consensus       115 ~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~----------~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~  184 (254)
                      +...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+.          .....++....      ..|.|.+++.+|+
T Consensus         7 i~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~~------~~L~i~~~~~~d~   80 (209)
T 1nbq_A            7 VHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLP------TGITFKSVTREDT   80 (209)
T ss_dssp             EECSCSBCCEETTCCCEEECEEESCSSEEEEEEEEETTEEEESEETTEECTTTTTTCEEET------TEEECSCCCTTSC
T ss_pred             EEcCCCceEEEcCCCEEEEEEEeCCCCcEEEEEEcCCceeEEEEecCccCccccCceEeec------cEEEEeeCCHHHC
Confidence            3344556678889999999999998889999999875421          11111222222      3799999999999


Q ss_pred             eeEEEEEEcCCCc--ceEEEEEEEecCCCCCCCCCCCCeeecCCccccccCCCCcEEEEEEE-eccCCCceeC
Q psy7036         185 GKYKVTAKNELGE--SNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRL-VGEPEPTISW  254 (254)
Q Consensus       185 G~y~C~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~l~C~~-~~~p~p~~~W  254 (254)
                      |.|+|.+.|..+.  ....+.|.|..          +|.+...+....+.+|+ .+.|.|.+ .+.|.|.++|
T Consensus        81 G~Y~C~~~~~~g~~~~~~~~~l~V~~----------~p~~~~~~~~~~~~~g~-~~~l~C~~~~~~p~~~v~W  142 (209)
T 1nbq_A           81 GTYTCMVSEEGGNSYGEVKVKLIVLV----------PPSKPTVNIPSSATIGN-RAVLTCSEQDGSPPSEYTW  142 (209)
T ss_dssp             SEEEEEEEETTSSCEECCEEECCEEB----------CCCCCCCCCBSEEETTS-CEEECCCCCSCBSCCEEEE
T ss_pred             cEEEEEEecCCCCccceEEEEEEEec----------CCcCCCcccccceecCC-EEEEEEeCCCCCCCceeEE
Confidence            9999999998663  34455566654          22222223334577888 99999997 8999999998

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.65  E-value=6.9e-16  Score=96.94  Aligned_cols=92  Identities=18%  Similarity=0.291  Sum_probs=73.4

Q ss_pred             CCCCCeeEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEE
Q psy7036           5 EDFAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLY   84 (254)
Q Consensus         5 ~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y   84 (254)
                      ...+|.|...+....+.+|+++.|.|.+.+.+.+ +.|||++..+....++.+...  +   ....|.|.+++.+|+|.|
T Consensus         5 ~~~~p~~~~~~~~~~v~~G~~v~l~C~~~~~~~~-v~W~k~g~~~~~~~~~~~~~~--~---~~~~L~I~~v~~~D~G~Y   78 (106)
T 2dlt_A            5 SSGQLEVLQDIADLTVKAAEQAVFKCEVSDEKVT-GKWYKNGVEVRPSKRITISHV--G---RFHKLVIDDVRPEDEGDY   78 (106)
T ss_dssp             SCCCCCEEECCCCEEEESSCCEECCCEESCSSCE-EEEEESSCBCCCCSSCEEEEE--T---TEEEEEESSCCTTTCSCE
T ss_pred             CCCCCEEecCCCCeEEeCCCeEEEEEEEcCCCcc-eEEEcCCEECcCCCCEEEEEe--C---CEEEEEECCCCcCCCEEE
Confidence            3457899999999999999999999999987777 999999998877666655422  1   123799999999999999


Q ss_pred             EEEEEcCCCceEEEEEEEEe
Q psy7036          85 KVKAKNKMGEVAASINLNFS  104 (254)
Q Consensus        85 ~C~~~~~~~~~~~~~~l~v~  104 (254)
                      +|.+.|.  .....+.|.|.
T Consensus        79 ~C~a~n~--~~~~~~~l~V~   96 (106)
T 2dlt_A           79 TFVPDGY--ALSLSAKLNFL   96 (106)
T ss_dssp             EEEEETS--CCCCCBCEEEE
T ss_pred             EEEEccC--CceEEEEEEEE
Confidence            9999987  33344555554

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.65  E-value=2.6e-15  Score=103.98  Aligned_cols=107  Identities=18%  Similarity=0.354  Sum_probs=81.5

Q ss_pred             eecCCCeEEEEEEEeeCCCC--eEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcceE
Q psy7036         123 QEDDGKRLLFECRIQADPAP--TVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNA  200 (254)
Q Consensus       123 ~~~~g~~~~l~C~~~~~~~~--~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~  200 (254)
                      .+.+|+.+.|.|.+.+.+.+  .+.|++++..+........         ...|.|.  +.+|+|.|+|.+.|.   ...
T Consensus         9 ~v~~G~~v~l~C~~~~~~~p~~~~~W~k~~~~l~~~~~~~~---------~~~l~i~--~~~d~G~Y~C~~~n~---~~~   74 (184)
T 3b5h_A            9 VEDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALPGQ---------KTEFKVD--SDDQWGEYSCVFLPE---PMG   74 (184)
T ss_dssp             EEEETTEEEEEEEEESCSSCCCEEEEESSSEEEECTTCCCS---------EEEEEEC--GGGCCEEEEEEEEST---TSC
T ss_pred             EEecCCCEEEEEECCCCCCCceEEEEEeCCEEeecccccCC---------cEEEEEe--chhhCeEEEEEEECC---cCc
Confidence            45679999999999887777  8999999988764432111         1256666  688999999999982   335


Q ss_pred             EEEEEEecCCCCCCCCCCCCeeecCCccccccCCCCcEEEEEEEeccC-CCceeC
Q psy7036         201 TISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLVGEP-EPTISW  254 (254)
Q Consensus       201 ~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~l~C~~~~~p-~p~~~W  254 (254)
                      ...|.|..          +|.+...+....+.+|+ .+.|.|.+.|.| .|.+.|
T Consensus        75 ~~~l~V~~----------~P~~~~~~~~~~~~~g~-~~~l~C~~~g~p~~~~i~W  118 (184)
T 3b5h_A           75 TANIQLHG----------PPRVKAVKSSEHINEGE-TAMLVCKSESVPPVTDWAW  118 (184)
T ss_dssp             EEEEEECC----------SCCCEESCSEEEECTTS-CEEEEEECCCSSCCCEEEE
T ss_pred             EEEEEEec----------CCceeecCCCcEEcCCC-cEEEEEEECCCCCCCeEEE
Confidence            55666653          56666666666788899 999999999999 788998

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=99.64  E-value=8.5e-15  Score=93.38  Aligned_cols=95  Identities=33%  Similarity=0.544  Sum_probs=77.4

Q ss_pred             CCCccccCCCeeeecCCCeEEEEEEEeeCCCCeEEEEECCEecccC-CcceEEEcCCCCceeeEEEEccCCCCCceeEEE
Q psy7036         111 LAPTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKED-KRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKV  189 (254)
Q Consensus       111 ~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C  189 (254)
                      .+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+... ....+....++   .+.|.|.+++.+|+|.|+|
T Consensus        14 ~~p~f~~~p~~~~v~~G~~v~L~C~~~g~p~p~v~W~k~~~~~~~~~~~~~~~~~~~~---~~~L~I~~v~~~D~G~Y~C   90 (116)
T 2kkq_A           14 RAPMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTG---RVTLLIKDVNKKDAGWYTV   90 (116)
T ss_dssp             BCCCBSSCCCCEEEETTEEEEEEEEBCCBSCCEEEEEETTEECCCCBTTEEEEECTTC---EEEEEEEEECGGGCEEEEE
T ss_pred             CCCeEEeCCCcEEEeCCCcEEEEEEEeccCCCEEEEEECCEECcCCCCeEEEEeCCCC---eEEEEECCCCcccCEEEEE
Confidence            5677777788888999999999999999999999999999988643 23333222222   2479999999999999999


Q ss_pred             EEEcCCCcceEEEEEEEec
Q psy7036         190 TAKNELGESNATISLNFDS  208 (254)
Q Consensus       190 ~~~~~~~~~~~~~~~~v~~  208 (254)
                      .|.|..|.....+.|.|..
T Consensus        91 ~a~N~~G~~~~~~~l~V~~  109 (116)
T 2kkq_A           91 SAVNEAGVTTCNTRLDVTA  109 (116)
T ss_dssp             EEEETTEEEEEEEEEEEEC
T ss_pred             EEEcCCCeEEEEEEEEEeC
Confidence            9999999988888888875

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.64  E-value=1.7e-15  Score=94.75  Aligned_cols=90  Identities=17%  Similarity=0.282  Sum_probs=71.5

Q ss_pred             CCCCCeeEeCCCc---eeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCC
Q psy7036           5 EDFAPSFTQKPQL---RQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDA   81 (254)
Q Consensus         5 ~~~~p~~~~~~~~---~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~   81 (254)
                      ...+|.+...|..   ..+.+|++++|.|.+.+.+.+ +.|+|++..+....++.+....     ....|.|.+++..|+
T Consensus         4 ~~~~P~~~~~p~~~~~~~v~~G~~v~l~C~~~~~p~~-v~W~k~g~~~~~~~~~~~~~~~-----~~~~L~I~~~~~~D~   77 (104)
T 2e6p_A            4 GSSGPVHILSPQDKVSLTFTTSERVVLTCELSRVDFP-ATWYKDGQKVEESELLVVKMDG-----RKHRLILPEAKVQDS   77 (104)
T ss_dssp             CCSSSCCCCBCCSCEEEEEESSSCEECCEECSSTTCC-CEEEETTEECCCBTTBEEEEET-----TEEEEEESSCCTTTC
T ss_pred             CCCCCCEEECCCCCccEEEeCCCcEEEEEEecCCCCc-cEEeeCCEECCCCCCEEEEeCC-----CEEEEEECCCChhhC
Confidence            4457888777777   788999999999999988888 9999999998776666554321     233799999999999


Q ss_pred             eEEEEEEEcCCCceEEEEEEEEe
Q psy7036          82 GLYKVKAKNKMGEVAASINLNFS  104 (254)
Q Consensus        82 G~Y~C~~~~~~~~~~~~~~l~v~  104 (254)
                      |.|+|.+.|..+    .+.|.|.
T Consensus        78 G~Y~C~a~n~~~----~~~l~V~   96 (104)
T 2e6p_A           78 GEFECRTEGVSA----FFGVTVQ   96 (104)
T ss_dssp             EEEEEECSSCCC----CEEEEEE
T ss_pred             EEEEEEECCceE----EEEEEEc
Confidence            999999988643    4566665

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1

Probab=99.64  E-value=9.9e-17  Score=103.50  Aligned_cols=102  Identities=21%  Similarity=0.363  Sum_probs=81.2

Q ss_pred             CCCCCCCCeeEeCCCceeecCCCeEEEEEEEeeCCCCc-eEEEeCCEEeee--CCcceEEEeecCCcceEEEEEEeccCC
Q psy7036           2 GIAEDFAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPD-IVWFRGETQLSE--DTRTVMKTTPIGTNKYLVALELDDVIE   78 (254)
Q Consensus         2 ~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~-v~W~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~i~~~~~   78 (254)
                      .+.+..+|.|.. +....+.+|+++.|.|.+.|.|.|. +.|++++..+..  ..++.+..... .....+.|.|.+++.
T Consensus         8 ~l~V~~~P~i~~-~~~~~~~~G~~v~l~C~~~g~P~p~~i~W~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~L~I~~v~~   85 (122)
T 2cry_A            8 TLTVNGPPIISS-TQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETIST-EEGVISTLTISNIVR   85 (122)
T ss_dssp             CCCCCSSCCEEE-ECCCCCCTTSCCCCCEEECCSSCCSEEEEESSSCEECSEEETTEEEEEEEE-TTEEEEEEECTTCCH
T ss_pred             EEEEecCCCccC-CCeEEEecCCCEEEEEEEeecCCCcEeEEEECCEEccCCCCCCEEEEEecC-CCceEEEEEEcCCCh
Confidence            467778999988 8888899999999999999999987 999999988764  23443322211 122345899999999


Q ss_pred             CCC-eEEEEEEEcCCCceEEEEEEEEec
Q psy7036          79 TDA-GLYKVKAKNKMGEVAASINLNFSR  105 (254)
Q Consensus        79 ~d~-G~Y~C~~~~~~~~~~~~~~l~v~~  105 (254)
                      .|. |.|+|.+.|..|.....+.|.|.+
T Consensus        86 ~D~~G~Y~C~a~N~~G~~~~~~~l~V~~  113 (122)
T 2cry_A           86 ADFQTIYNCTAWNSFGSDTEIIRLKEQG  113 (122)
T ss_dssp             HHHHSCEEEEEECSSCEEEEEECCCCSC
T ss_pred             hhCCceEEEEEECCCCeEEEEEEEEECC
Confidence            999 999999999999988888877753

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.64  E-value=8.8e-16  Score=97.15  Aligned_cols=96  Identities=30%  Similarity=0.547  Sum_probs=78.5

Q ss_pred             CCCccccCCCeeeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEE
Q psy7036         111 LAPTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVT  190 (254)
Q Consensus       111 ~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~  190 (254)
                      .+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+............++.   +.|.|.+++.+|.|.|+|.
T Consensus         8 ~~P~i~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~---~~L~i~~v~~~D~G~Y~C~   84 (110)
T 2dm3_A            8 FRPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGV---HSLIIEPVTSRDAGIYTCI   84 (110)
T ss_dssp             CCCEEEECCCEEEEESSSCBCCEEEEECSSCCEEECBBSSSBCCCCSSEEEEECTTSC---EEEEESSCCGGGCSBBCEE
T ss_pred             CCCcEEeCCCcEEEeCCCEEEEEEEEEEcCCCEEEEEECCEECCCCCceEEEEecCCe---EEEEEeeCCcccCEEEEEE
Confidence            4666666777788899999999999999999999999999887765544443333332   3799999999999999999


Q ss_pred             EEcCCCcceEEEEEEEecC
Q psy7036         191 AKNELGESNATISLNFDSD  209 (254)
Q Consensus       191 ~~~~~~~~~~~~~~~v~~~  209 (254)
                      |.|..|.....+.|.|...
T Consensus        85 a~n~~g~~~~~~~l~V~~~  103 (110)
T 2dm3_A           85 ATNRAGQNSFSLELVVAAK  103 (110)
T ss_dssp             EECSSCEEEECCEEEEECC
T ss_pred             EECCCCEEEEEEEEEEeCC
Confidence            9999998888888888753

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A

Probab=99.64  E-value=2e-15  Score=108.35  Aligned_cols=124  Identities=19%  Similarity=0.356  Sum_probs=92.8

Q ss_pred             CCCeeeecCCCeEEEEEEEeeCCC-CeEEEEECCEecc---------cCC--cceEE----------EcCCCCceeeEEE
Q psy7036         118 KPSIRQEDDGKRLLFECRIQADPA-PTVIWSHSGVQVK---------EDK--RHKFS----------IDKDGHSYFASLE  175 (254)
Q Consensus       118 ~~~~~~~~~g~~~~l~C~~~~~~~-~~~~W~~~~~~~~---------~~~--~~~~~----------~~~~~~~~~~~l~  175 (254)
                      .+....+..|+.+.|.|.+.+.+. +.+.|++++....         ...  ..++.          ...++     .|.
T Consensus         6 ~p~~~~v~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~-----~L~   80 (231)
T 2pet_A            6 VPPLVEVMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRSPPYQLDSQG-----RLV   80 (231)
T ss_dssp             CCSEEEEETTCCEEECCCCBSCCSEEEEEEEEECTTCCCCEEEEEEEETTEEEEEECCCSCCSSCCEECTTC-----CEE
T ss_pred             CCCcEEEEcCCCEEEecccCCCCCceEEEEEEeCCCceeEEEEeccccCCccccccccccccccccccCCCc-----eEE
Confidence            345677889999999999988885 8899998654311         000  11121          22233     599


Q ss_pred             EccCCCCCceeEEEEEEcCC-CcceEEEEEEEecCCCCCCCCCCCCeeecCCccccccCCCCcE-EEEEEE-eccCCCce
Q psy7036         176 IIDVTIEDAGKYKVTAKNEL-GESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDI-VIECRL-VGEPEPTI  252 (254)
Q Consensus       176 i~~~~~~d~G~y~C~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~-~l~C~~-~~~p~p~~  252 (254)
                      |.+++.+|+|.|+|.+.+.. +.....+.|.|...       +..|.+...+....+.+|+ .+ .|.|.+ .+.|.|.+
T Consensus        81 i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~-------p~~~~~~~~~~~~~~~~g~-~~~~l~C~~~~~~p~p~i  152 (231)
T 2pet_A           81 LAEAQVGDERDYVCVVRAGAAGTAEATARLNVFAK-------PEATEVSPNKGTLSVMEDS-AQEIATCNSRNGNPAPKI  152 (231)
T ss_dssp             ESSCCGGGCEEEEEEEECGGGCEEEEEEEEEEEBC-------CCCCEEEECCSSCCTTCCS-EEEEEEEEEEEEBSCCEE
T ss_pred             EcccCcccCceEEEEEEecCCCceEEEEEEEEEec-------CCCcEEecCCcceeecCCC-ceEEEEEEeECcccCCEE
Confidence            99999999999999999987 66677778887752       2346677777777788888 77 999999 89999999


Q ss_pred             eC
Q psy7036         253 SW  254 (254)
Q Consensus       253 ~W  254 (254)
                      +|
T Consensus       153 ~W  154 (231)
T 2pet_A          153 TW  154 (231)
T ss_dssp             EE
T ss_pred             EE
Confidence            98

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.64  E-value=1.3e-15  Score=95.19  Aligned_cols=90  Identities=13%  Similarity=0.267  Sum_probs=73.1

Q ss_pred             CCCCeeEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEE
Q psy7036           6 DFAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYK   85 (254)
Q Consensus         6 ~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~   85 (254)
                      ..+|.|...+....+.+|++++|.|.+.+ +.+.+.|+|++..+....++.+...  +.   ...|.|.+++..|+|.|+
T Consensus         6 ~~pp~~~~~~~~~~v~~G~~v~l~C~~~~-~~~~v~W~k~g~~~~~~~~~~~~~~--~~---~~~L~I~~v~~~D~G~Y~   79 (103)
T 2edf_A            6 SGPAAIIKPLEDQWVAPGEDVELRCELSR-AGTPVHWLKDRKAIRKSQKYDVVCE--GT---MAMLVIRGASLKDAGEYT   79 (103)
T ss_dssp             CCCCCEEECCCCEEECTTSCEEECCEESS-SSCCCCEEESSCBCCCSSSEEEEEE--TT---EEEEEESSCCTTTCSEEE
T ss_pred             CCCcEEEecCCccEEcCCCCEEEEEEEeC-CCCcEEEEECCEEccCCCCEEEEEC--CC---EEEEEECCCCcccCEEEE
Confidence            45788999999999999999999999986 7788999999998877665554422  21   347999999999999999


Q ss_pred             EEEEcCCCceEEEEEEEEec
Q psy7036          86 VKAKNKMGEVAASINLNFSR  105 (254)
Q Consensus        86 C~~~~~~~~~~~~~~l~v~~  105 (254)
                      |.+.|    ....+.|.|..
T Consensus        80 C~a~n----~~~~~~l~V~~   95 (103)
T 2edf_A           80 CEVEA----SKSTASLHVEE   95 (103)
T ss_dssp             EECSS----CEEEEEEEECC
T ss_pred             EEEcc----CCcEEEEEEeC
Confidence            99988    35667777763

>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L*

Probab=99.64  E-value=3.3e-15  Score=105.93  Aligned_cols=125  Identities=16%  Similarity=0.231  Sum_probs=86.1

Q ss_pred             eeeecCCCeEEEEEEEeeCCCCeEEEEEC--CEecc---c-C------CcceEEEcCCCCceeeEEEEccCCCCCceeEE
Q psy7036         121 IRQEDDGKRLLFECRIQADPAPTVIWSHS--GVQVK---E-D------KRHKFSIDKDGHSYFASLEIIDVTIEDAGKYK  188 (254)
Q Consensus       121 ~~~~~~g~~~~l~C~~~~~~~~~~~W~~~--~~~~~---~-~------~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~  188 (254)
                      ...+.+|+.+.|.|.+.+.+.+.+.|+|.  +....   . .      ...++.....  .....|.|.+++.+|+|.|+
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~--~~~~~L~I~~v~~~D~G~Y~   86 (213)
T 3mj8_L            9 LVSVALGQKATITCSGDKLSDVYVHWYQQKAGQAPVLVIYEDNRRPSGIPDHFSGSNS--GNMATLTISKAQAGDEADYY   86 (213)
T ss_dssp             EEEEETTSCEEEEEECSSTTTSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEE--TTEEEEEESSCCGGGCEEEE
T ss_pred             cEEEeCCCCEEEEEEcCCCCCceEEEEEECCCCCcEEEEEECCccCCCccCcEEEEec--CCEEEEEECCCChhhCEEEE
Confidence            67788999999999999889999999983  21110   0 0      0111111111  11247999999999999999


Q ss_pred             EEEEcCCC---cceEEEEEEEecCCCCCCCCCCCCeeecCCccccccCCCCcEEEEEEEecc-CC-CceeC
Q psy7036         189 VTAKNELG---ESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLVGE-PE-PTISW  254 (254)
Q Consensus       189 C~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~l~C~~~~~-p~-p~~~W  254 (254)
                      |.+.|..+   .......|.|...      ...+|.+...+....+.+|+ .+.|.|.+.|. |+ +.++|
T Consensus        87 C~~~~~~~~~~~~~~~~~l~V~~~------~~~~P~i~~~~~~~~~~~g~-~v~l~C~~~g~~p~~~~v~W  150 (213)
T 3mj8_L           87 CQSWDGTNSAWVFGSGTKVTVLGQ------PNAAPSVTLFPPSSEELKTN-QATLVCMINGFYPADVAVTW  150 (213)
T ss_dssp             EEEEETTTTEEEEBCCEEEEEECS------CCBCCEEEEECCCHHHHTTT-EEEEEEEEEEEBSSCCEEEE
T ss_pred             EEeccCCcceeEEcCceEEEEeCC------CCCCCeEEccCCCcccccCC-cEEEEEEeeceeCCCeEEEE
Confidence            99999887   3345566666631      11366676666555566888 99999999986 44 37888

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens}

Probab=99.64  E-value=3.6e-15  Score=92.42  Aligned_cols=92  Identities=25%  Similarity=0.397  Sum_probs=73.8

Q ss_pred             CCccccCCCeeeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEE
Q psy7036         112 APTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTA  191 (254)
Q Consensus       112 ~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~  191 (254)
                      +|.+...+....+..|+.+.|.|.+.+.|.+.+.|++++..+.......+.....    .+.|.|.++..+|+|.|+|.|
T Consensus         6 ~P~i~~~~~~~~v~~G~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~----~~~L~i~~~~~~d~G~Y~C~a   81 (99)
T 3puc_A            6 KPVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKG----GFFLEIHKTDTSDSGLYTCTV   81 (99)
T ss_dssp             EEEEEECCCCEEEESSSCEEEEEEEEEESCCEEEEEETTEECCSSSSEEEEEETT----EEEEEECSCCGGGCEEEEEEE
T ss_pred             CCEEEecCccEEEeCCCcEEEEEEEEecCCCEEEEEECCEECcCCCCEEEEEeCC----EEEEEECCCCcccCEEEEEEE
Confidence            3444445566778899999999999999999999999999887665544433222    137999999999999999999


Q ss_pred             EcCCCcceEEEEEEEe
Q psy7036         192 KNELGESNATISLNFD  207 (254)
Q Consensus       192 ~~~~~~~~~~~~~~v~  207 (254)
                      .|..|.....+.|.|.
T Consensus        82 ~n~~g~~~~~~~l~V~   97 (99)
T 3puc_A           82 KNSAGSVSSSCKLTIK   97 (99)
T ss_dssp             EETTEEEEEEEEEEEE
T ss_pred             EeCCCcEeEEEEEEEE
Confidence            9999998888888775

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.64  E-value=4e-15  Score=94.08  Aligned_cols=95  Identities=28%  Similarity=0.466  Sum_probs=76.4

Q ss_pred             CCCccccCCCeeeecCCCeEEEEEEEeeCCCCeEEEEECCEecccC-CcceEEEcCCCCceeeEEEEccCCCCCceeEEE
Q psy7036         111 LAPTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKED-KRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKV  189 (254)
Q Consensus       111 ~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C  189 (254)
                      .+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+... ....+....++.   ..|.|.+++.+|.|.|+|
T Consensus         7 ~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~~~~~~~~---~~L~i~~v~~~D~G~Y~C   83 (110)
T 2dm2_A            7 GAPFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGT---CSLHTTASTLDDDGNYTI   83 (110)
T ss_dssp             CCCCBSSCCCCEEEETTCCEEEEEEBCCSSCCEEEEECSSCBCCTTCSSEEEEECTTCE---EEEEESSCCTTTCSCCEE
T ss_pred             CCCEEEecCcCeEEeCCCeEEEEEEEEecCCCEEEEEECCEECCCCCCeEEEEECCCcE---EEEEECCCChhhCEEEEE
Confidence            4666666677788899999999999999999999999999888653 333333322332   379999999999999999


Q ss_pred             EEEcCCCcceEEEEEEEec
Q psy7036         190 TAKNELGESNATISLNFDS  208 (254)
Q Consensus       190 ~~~~~~~~~~~~~~~~v~~  208 (254)
                      .|.|..|.....+.|.|..
T Consensus        84 ~a~N~~g~~~~~~~l~V~~  102 (110)
T 2dm2_A           84 MAANPQGRISCTGRLMVQA  102 (110)
T ss_dssp             EEECTTCCEEECCCEEEEC
T ss_pred             EEEECCCeEEEEEEEEEEC
Confidence            9999999988888888875

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A

Probab=99.64  E-value=4.2e-15  Score=99.81  Aligned_cols=95  Identities=31%  Similarity=0.545  Sum_probs=77.4

Q ss_pred             CCCccccCCCeeeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEE
Q psy7036         111 LAPTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVT  190 (254)
Q Consensus       111 ~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~  190 (254)
                      .+|.+...+....+..|+.+.|.|.+.+.|.+.+.|+|++..+.......+....++.   ..|.|.+++.+|.|.|+|.
T Consensus        40 ~~P~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~~~~---~~L~I~~v~~~D~G~Y~C~  116 (154)
T 1fhg_A           40 VKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGN---CSLTISEVCGDDDAKYTCK  116 (154)
T ss_dssp             EEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCSSSEEEEECTTCE---EEEEESSCCGGGCEEEEEE
T ss_pred             CCCeEEccCCcEEEeCCCeEEEEEEEEEecCCEEEEEECCEECCCCCcEEEEECCCCe---EEEEECCCChhcCEEEEEE
Confidence            3455555556678889999999999999999999999999988766555444333332   4899999999999999999


Q ss_pred             EEcCCCcceEEEEEEEec
Q psy7036         191 AKNELGESNATISLNFDS  208 (254)
Q Consensus       191 ~~~~~~~~~~~~~~~v~~  208 (254)
                      |.|..|.....+.|.|..
T Consensus       117 a~N~~G~~~~~~~l~V~~  134 (154)
T 1fhg_A          117 AVNSLGEATCTAELLVET  134 (154)
T ss_dssp             EEETTEEEEEEEEEEEEC
T ss_pred             EEECCCeEEEEEEEEEeC
Confidence            999999988888888875

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A

Probab=99.63  E-value=3.4e-15  Score=106.51  Aligned_cols=124  Identities=19%  Similarity=0.328  Sum_probs=82.7

Q ss_pred             CCeeeecCCCeEEEEEEEeeCCC-----CeEEEEECCEecccCC-------------cceEEEcCCC-CceeeEEEEccC
Q psy7036         119 PSIRQEDDGKRLLFECRIQADPA-----PTVIWSHSGVQVKEDK-------------RHKFSIDKDG-HSYFASLEIIDV  179 (254)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~~~-----~~~~W~~~~~~~~~~~-------------~~~~~~~~~~-~~~~~~l~i~~~  179 (254)
                      ...+.+..|+.+.|.|.+.+.|.     ..+.|++++..+....             ..+.....++ ......|.|.++
T Consensus         8 ~~~v~~~~G~~v~L~C~~~~~p~~~~~~~~v~W~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v   87 (222)
T 3sbw_C            8 KDLYVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLKDQLSLGNAALQITDV   87 (222)
T ss_dssp             CSEEEEETTSCEEEEEECCCCSSCCTTTCEEEEEETTEEEEEEETTEECSSSSCGGGSSSEEECHHHHTTTEEEEEESSC
T ss_pred             CccEEEEcCCcEEEEeEecCCCCCCCccEEEEEEECCcEEEEEeCCccccccccccccCceEEccccccCCEEEEEEcCc
Confidence            34567788999999999877663     4799999764331100             0111111110 011247999999


Q ss_pred             CCCCceeEEEEEEcCCCcceEEEEEEEecCCCCCCCCCCCCeeecCCccccccCCCCcEEEEEEEeccCCCceeC
Q psy7036         180 TIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLVGEPEPTISW  254 (254)
Q Consensus       180 ~~~d~G~y~C~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~l~C~~~~~p~p~~~W  254 (254)
                      +.+|+|.|+|.+.| .+.....+.|.|....       ..|...   ....+.+|+ .+.|.|.+.|+|.|.++|
T Consensus        88 ~~~D~G~Y~C~~~~-~~~~~~~~~l~V~~~~-------~~~~~~---~~~~~~~g~-~v~L~C~~~g~P~p~i~W  150 (222)
T 3sbw_C           88 KLQDAGVYRCMISY-GGADYKRITVKVNAPY-------NKINQR---ILVVDPVTS-EHELTCQAEGYPKAEVIW  150 (222)
T ss_dssp             CGGGCEEEEEEEES-SSEEEEEEEEEEEBCC-------CCCEEE---EEEEETTTT-EEEEEEEEEEBSCCEEEE
T ss_pred             ccccCeEEEEEEEe-CCCceeEEEEEEECCC-------CCCCce---eeeeecCCC-cEEEEEEecCCCCCeEEE
Confidence            99999999999999 5666667777776411       122221   112456788 999999999999999999

>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A

Probab=99.63  E-value=5e-16  Score=108.94  Aligned_cols=126  Identities=16%  Similarity=0.237  Sum_probs=87.4

Q ss_pred             CCccccCCCeeeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEE
Q psy7036         112 APTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTA  191 (254)
Q Consensus       112 ~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~  191 (254)
                      +|.+...+. ..+.+|+.++|.|.+.+.+. .+.|+|++..+............+     ..|.|.+++.+|+|.|+|.+
T Consensus         5 ~P~i~~~p~-~~v~~G~~v~L~C~~~~~~~-~~~W~k~g~~~~~~~~~~~~~~~~-----~~L~i~~v~~~D~G~Y~C~a   77 (198)
T 1ugn_A            5 KPTLWAEPG-SVITQGSPVTLRCQGGQETQ-EYRLYREKKTAPWITRIPQELVKK-----GQFPIPSITWEHTGRYRCYY   77 (198)
T ss_dssp             CCEEEEESC-SEEETTCCEEEEEECCTTCC-CEEEEESSSCCHHHHTSCHHHHTT-----TEEEESSCCGGGCEEEEEEE
T ss_pred             CCeEeccCC-CcccCCCcEEEEEEecCCCc-EEEEEECCccccccccccccCCcc-----cEEEECCCCHHHCeEEEEEE
Confidence            344444444 36779999999999987765 799999987764211110001112     27999999999999999999


Q ss_pred             EcCC-C--cceEEEEEEEecCCCCCCCCCCCCeeecCCccccccCCCCcEEEEEEEeccCCCceeC
Q psy7036         192 KNEL-G--ESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLVGEPEPTISW  254 (254)
Q Consensus       192 ~~~~-~--~~~~~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~l~C~~~~~p~p~~~W  254 (254)
                      .|.. +  .....+.|.|...       ...|.+...+. ..+.+|+ .+.|.|.+.+. .|.+.|
T Consensus        78 ~n~~~g~~~~s~~~~l~V~~~-------~~~p~i~~~~~-~~v~~G~-~v~L~C~~~~~-~~~v~W  133 (198)
T 1ugn_A           78 GSDTAGRSESSDPLELVVTGA-------YIKPTLSAQPS-PVVNSGG-NVTLQCDSQVA-FDGFIL  133 (198)
T ss_dssp             EETTTEECCCCCCEEEEEECS-------SCCCEEEEESC-SEEETTC-CEEEEEECSSC-CSEEEE
T ss_pred             ECCCCCcccCCccEEEEEccc-------ccCCccccCCc-cccCCCC-cEEEEEecCCC-CcEEEE
Confidence            9987 5  3345566766641       12455555443 4677899 99999999988 678887

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.63  E-value=1.1e-15  Score=95.41  Aligned_cols=90  Identities=18%  Similarity=0.246  Sum_probs=71.8

Q ss_pred             CCCeeEeCCCceeecCCCeEEEEEEEeeCCC-CceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEE
Q psy7036           7 FAPSFTQKPQLRQEDEGNRLIFECQLLCNPK-PDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYK   85 (254)
Q Consensus         7 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~-~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~   85 (254)
                      .+|.|...+....+.+|++++|.|.+.+.+. +.+.|||+|..+....++.+...  +   ....|.|.+++.+|+|.|+
T Consensus         7 ~p~~~~~~~~~~~v~~G~~v~l~C~v~~~~~~~~v~W~k~g~~i~~~~r~~~~~~--~---~~~~L~I~~v~~~D~G~Y~   81 (104)
T 2eny_A            7 GHVGITKRLKTMEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQATRQ--G---RKYILVVREAAPSDAGEVV   81 (104)
T ss_dssp             CCCCCSBCCCCEEEESSCCEEEEEECSSCCCSSCBCCBSSSSBCSBCSSCEEEEE--T---TEEEEEECSCCTTTCSCEE
T ss_pred             CCCEEEecCCCcEEcCCCcEEEEEEEcCCCCCceeEEEECCEECCCCCCEEEEEc--C---CEEEEEECCCCHHHCEEEE
Confidence            3567888999999999999999999987764 47999999999877766655432  1   1337999999999999999


Q ss_pred             EEEEcCCCceEEEEEEEEec
Q psy7036          86 VKAKNKMGEVAASINLNFSR  105 (254)
Q Consensus        86 C~~~~~~~~~~~~~~l~v~~  105 (254)
                      |.+.|    ...++.|.|..
T Consensus        82 C~a~~----~~~~a~L~V~~   97 (104)
T 2eny_A           82 FSVRG----LTSKASLIVRE   97 (104)
T ss_dssp             EEETT----EEEEECEEEEC
T ss_pred             EEECC----eeEEEEEEEeC
Confidence            98854    45677778763

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens}

Probab=99.63  E-value=8.2e-15  Score=122.25  Aligned_cols=166  Identities=16%  Similarity=0.210  Sum_probs=109.2

Q ss_pred             CCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccC-CCCCeEEEEEEEcCCCceEEEEE
Q psy7036          22 EGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVI-ETDAGLYKVKAKNKMGEVAASIN  100 (254)
Q Consensus        22 ~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~G~Y~C~~~~~~~~~~~~~~  100 (254)
                      .+..+.|.|.+.|.|.+.+.|.++|..+..-...              .+.|..+. ....+.|.|.+.+..|..... .
T Consensus        90 ~~g~l~v~c~~~g~P~p~i~W~k~g~~~~~~~~~--------------~~~i~~~~~~~~~l~~~~va~~~~G~~~~~-~  154 (731)
T 2v5y_A           90 PPGLLNVYVKVNNGPLGNPIWNISGDPTRTWNRA--------------ELAISTFWPNFYQVIFEVITSGHQGYLAID-E  154 (731)
T ss_dssp             CSEEEEEEEEETTCCCCSEEEEECCCCCSSCEEE--------------EEEECCCTTSCEEEEEEEEECSSCCEEEEC-C
T ss_pred             CcceEEEEEecCCCCccceeEEEeCCcCCceeEE--------------EEEEeecCCCceEEEEEEEecCCceEEEEe-e
Confidence            3458999999999999999999999765321111              34444332 222367777666665543221 1


Q ss_pred             EEEeccccCCCCCccccCCCeeeecCCCeEEEEEEEeeCCCCeEE-EE--ECCEecccCCcceEEEcCCCCceeeEEEEc
Q psy7036         101 LNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQADPAPTVI-WS--HSGVQVKEDKRHKFSIDKDGHSYFASLEII  177 (254)
Q Consensus       101 l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~-W~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~  177 (254)
                      +.+..... ..+|.+. .+....+..|+.+.|.|.+.|.|.+.+. |+  +++..+.....  ...  ......+.|.|.
T Consensus       155 v~~~~~~~-~~~p~~~-~~~~~~v~~G~~v~l~C~~~g~P~p~i~~W~~~~~g~~l~~~~~--~~~--~~~~~~~~l~I~  228 (731)
T 2v5y_A          155 VKVLGHPC-TRTPHFL-RIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEI--KVT--SSRRFIASFNVV  228 (731)
T ss_dssp             BEEESSCC-SSSCEEC-CCCCEEEETTSCEEEEEEEESCCCTTCEEEEEESSSCCEEEEEE--EEC--CSSEEEEEEEEC
T ss_pred             EEeeeccc-ccccccc-cccceEEeCCCcEEEEEEeCCCCCCceeEEEecCCCccccccce--EEe--ccccceEEEEEc
Confidence            22221111 1345554 4456788899999999999999999887 88  67766542211  111  111223589999


Q ss_pred             cCCCCCceeEEEEEEcCCCc-ceEEEEEEEec
Q psy7036         178 DVTIEDAGKYKVTAKNELGE-SNATISLNFDS  208 (254)
Q Consensus       178 ~~~~~d~G~y~C~~~~~~~~-~~~~~~~~v~~  208 (254)
                      ++...|.|.|+|.|.|..|. ......+.|..
T Consensus       229 ~~~~~d~g~Y~c~A~n~~G~~~s~~~~l~V~~  260 (731)
T 2v5y_A          229 NTTKRDAGKYRCMIRTEGGVGISNYAELVVKE  260 (731)
T ss_dssp             SCCTTTCEEEEEEEEETTEEEECCCEEEEEEC
T ss_pred             ccccccCeEEEEEEECCCCCcceeeEEEEEec
Confidence            99999999999999999997 56666677764

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.63  E-value=1.5e-15  Score=96.85  Aligned_cols=93  Identities=19%  Similarity=0.264  Sum_probs=72.9

Q ss_pred             CCCC-CeeEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeE
Q psy7036           5 EDFA-PSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGL   83 (254)
Q Consensus         5 ~~~~-p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~   83 (254)
                      +..+ +.|...+....+.+|++++|.|.+.+.|.+.+.|+|++..+....++.+... .+   ....|.|.+++.+|+|.
T Consensus         9 V~~~p~~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~l~~~~~~~~~~~-~~---~~~~L~I~~v~~~D~G~   84 (115)
T 2cr6_A            9 VQGRRVHIIEDLEDVDVQEGSSATFRCRISPANYEPVHWFLDKTPLHANELNEIDAQ-PG---GYHVLTLRQLALKDSGT   84 (115)
T ss_dssp             CCSSCCEEEECCCEEEEETTSCEECCCEEESTTCCSCEEEESSCEECCSSSCCBCCB-TT---TBCCBEECSCCTTTCEE
T ss_pred             EcCCCCeEeccCccEEEeCCCcEEEEEEEcCCCCCccEEEECCEECCCCCcEEEEEc-CC---CEEEEEEcCCChhhCEE
Confidence            3444 4788899999999999999999999999999999999998877665544211 11   12269999999999999


Q ss_pred             EEEEEEcCCCceEEEEEEEEec
Q psy7036          84 YKVKAKNKMGEVAASINLNFSR  105 (254)
Q Consensus        84 Y~C~~~~~~~~~~~~~~l~v~~  105 (254)
                      |+|.+    |.....+.|.|..
T Consensus        85 Y~C~~----g~~~~~~~L~V~~  102 (115)
T 2cr6_A           85 IYFEA----GDQRASAALRVTE  102 (115)
T ss_dssp             EEEEE----TTEECCEEEEEEC
T ss_pred             EEEEE----CCeeEEEEEEEEC
Confidence            99993    4556677888873

>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens}

Probab=99.63  E-value=2.9e-15  Score=103.78  Aligned_cols=117  Identities=15%  Similarity=0.138  Sum_probs=84.1

Q ss_pred             CCccccCCCeeeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEE
Q psy7036         112 APTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTA  191 (254)
Q Consensus       112 ~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~  191 (254)
                      +|.+...+.. .+.+|+.++|.|.+.+ +.+.+.|+|++...         ...+.     .|.|.+++.+|+|.|+|.+
T Consensus         8 ~P~i~~~p~~-~v~~G~~v~L~C~~~~-~~~~~~W~k~g~~~---------~~~~~-----~L~i~~v~~~D~G~Y~C~a   71 (184)
T 2gi7_A            8 KPSLQALPSS-LVPLEKPVTLRCQGPP-GVDLYRLEKLSSSR---------YQDQA-----VLFIPAMKRSLAGRYRCSY   71 (184)
T ss_dssp             CCEEEEESCS-EEETTCCEEEEEECST-TCSEEEEEETTTCC---------EESSS-----EEEESSCCGGGCEEEEEEE
T ss_pred             CCeEEeCCCc-cccCCCcEEEEEeCCC-CCCEEEEEECCccc---------cCccc-----EEEECcCChhhCceEEEEE
Confidence            4444444443 6789999999999876 77899999987651         11122     7999999999999999999


Q ss_pred             EcCCCc--ceEEEEEEEecCCCCCCCCCCCCeeecCCccccccCCCCcEEEEEEEeccCCCceeC
Q psy7036         192 KNELGE--SNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLVGEPEPTISW  254 (254)
Q Consensus       192 ~~~~~~--~~~~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~l~C~~~~~p~p~~~W  254 (254)
                      .|..+.  .+..+.|.|...       ..+|.+...+ ...+.+|+ .+.|.|.+.+.| +.+.|
T Consensus        72 ~n~~g~~~~s~~~~l~V~~~-------~~~p~i~~~p-~~~v~~G~-~v~l~C~~~~~~-~~~~w  126 (184)
T 2gi7_A           72 QNGSLWSLPSDQLELVATGV-------FAKPSLSAQP-GPAVSSGG-DVTLQCQTRYGF-DQFAL  126 (184)
T ss_dssp             EETTEEBCCCCCEEEEEESS-------SCCCEEEEEC-CCSSCCTT-CEEEEEECSSCC-CEEEE
T ss_pred             EcCCCccCCCCCEEEEecCc-------CCCCEEEeCC-CceecCCC-cEEEEEEcCCCC-cEEEE
Confidence            998763  244566666431       1256666656 34677898 999999987655 57777

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A

Probab=99.63  E-value=4.3e-15  Score=104.44  Aligned_cols=114  Identities=15%  Similarity=0.191  Sum_probs=81.5

Q ss_pred             eeecCCCeEEEEEEEeeCCCCeEEEEECC-EecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcceE
Q psy7036         122 RQEDDGKRLLFECRIQADPAPTVIWSHSG-VQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNA  200 (254)
Q Consensus       122 ~~~~~g~~~~l~C~~~~~~~~~~~W~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~  200 (254)
                      ..+.+|+.+.|.|.+.|.|.+.+.|++.. ..+.  .  .......    ...|.|.+++.+|+|.|+|.|.|..+....
T Consensus        11 ~~~~~G~~v~L~C~~~g~P~p~i~W~~~~~~~~~--~--~~~~~~~----~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~   82 (202)
T 1vca_A           11 YLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLN--G--KVTNEGT----TSTLTMNPVSFGNEHSYLCTATCESRKLEK   82 (202)
T ss_dssp             EEEETTSCEEEEEEEESCSSCEEEEEETTCCCCS--S--EEEEETT----EEEEEESSCCGGGCSEEEEEEEETTEEEEE
T ss_pred             EEEcCCCcEEEEEeecCCCCCeEEEECCCCCCcc--c--eEEEcCC----ccEEEECcCCHHHCEEEEEEEEECCceEee
Confidence            34558999999999999999999999843 1111  1  1111111    126999999999999999999999887777


Q ss_pred             EEEEEEecCCCCCCCCCCCCeeecCCccccccCCCCcEEEEEEEeccCC---CceeC
Q psy7036         201 TISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLVGEPE---PTISW  254 (254)
Q Consensus       201 ~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~l~C~~~~~p~---p~~~W  254 (254)
                      .+.|.|...+       ..+.+.  +. ..+.+|+ .++|.|.+.+.++   +.++|
T Consensus        83 ~~~l~V~~~p-------~~~~~~--~~-~~~~~G~-~~~L~C~~~~~~p~~~~~i~W  128 (202)
T 1vca_A           83 GIQVEIYSFP-------KDPEIH--LS-GPLEAGK-PITVKCSVADVYPFDRLEIDL  128 (202)
T ss_dssp             EEEEEEEBCC-------SCCEEE--ES-SCEETTS-CEEEEEEEEEEBSGGGEEEEE
T ss_pred             EEEEEEEeCC-------CCCEeC--Cc-eEEcCCC-CEEEEEEECCcCCCCCeEEEE
Confidence            8888887521       122333  22 4678899 9999999998644   35788

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X

Probab=99.63  E-value=1.3e-14  Score=92.57  Aligned_cols=83  Identities=19%  Similarity=0.314  Sum_probs=67.2

Q ss_pred             CCCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcC---CCCceeeEEEEccCCCCCceeEEEEEEcCCCcceEEE
Q psy7036         126 DGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDK---DGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATI  202 (254)
Q Consensus       126 ~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~  202 (254)
                      .+..+.|.|.+.|.|.|.+.|+|||..+............   +.......|.|.++...|+|.|+|.|.|..|....++
T Consensus        14 ~~~~~~l~c~v~G~P~P~I~W~knG~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~t~   93 (126)
T 1he7_A           14 EMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASI   93 (126)
T ss_dssp             CCCEEEEEEEECCSSCCEEEEEETTEECCCCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEEEEEETTEEEEEEE
T ss_pred             cCccEEEEEEEeeeCCCeEEEEECCEECCCCCceeEEEeeccccccccceEEEECcCCCCCCEEEEEEEEECCCeEEEEE
Confidence            5778999999999999999999999999876554333322   1222345899999999999999999999999988888


Q ss_pred             EEEEec
Q psy7036         203 SLNFDS  208 (254)
Q Consensus       203 ~~~v~~  208 (254)
                      .+.|..
T Consensus        94 ~l~v~~   99 (126)
T 1he7_A           94 MAAFMD   99 (126)
T ss_dssp             EECCCS
T ss_pred             EEEEEc
Confidence            777764

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.63  E-value=9.9e-15  Score=92.73  Aligned_cols=93  Identities=17%  Similarity=0.292  Sum_probs=71.2

Q ss_pred             CCCCCCCeeEeCCCc---eeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCC
Q psy7036           3 IAEDFAPSFTQKPQL---RQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIET   79 (254)
Q Consensus         3 ~~~~~~p~~~~~~~~---~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~   79 (254)
                      ..+..+|.+...|..   ..+.+|+++.|.|.+. .|.+.+.|+|++..+....++.+...  +   ....|.|.+++.+
T Consensus         5 ~~v~~pp~~~~~p~~~~~~~~~~G~~v~L~C~~~-~p~~~v~W~k~g~~~~~~~~~~~~~~--~---~~~~L~I~~v~~~   78 (113)
T 2cpc_A            5 SSGTDVSSWIVYPSGKVYVAAVRLERVVLTCELC-RPWAEVRWTKDGEEVVESPALLLQKE--D---TVRRLVLPAVQLE   78 (113)
T ss_dssp             CCCCSCSCSEEESCSCEEEEEETTCCEEEEEEES-CTTCCCEEEETTEECCCBTTBEEEEC--S---SEEEEEESSCCTT
T ss_pred             cccccCCcEEEccCCceeEEEEcCCeEEEEEEec-CCCCeEEEEECCEECccCCCEEEEEC--C---CEEEEEECCCCcc
Confidence            344556766666655   5788999999999996 78889999999999877666554322  1   1237999999999


Q ss_pred             CCeEEEEEEEcCCCceEEEEEEEEec
Q psy7036          80 DAGLYKVKAKNKMGEVAASINLNFSR  105 (254)
Q Consensus        80 d~G~Y~C~~~~~~~~~~~~~~l~v~~  105 (254)
                      |+|.|+|.+.|    ....+.|.|..
T Consensus        79 D~G~Y~C~a~n----~~~~~~l~V~~  100 (113)
T 2cpc_A           79 DSGEYLCEIDD----ESASFTVTVTE  100 (113)
T ss_dssp             TCEEEEEESSS----CEEEEEEEEEC
T ss_pred             cCEEEEEEEec----CcEEEEEEEec
Confidence            99999999987    45567777763

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C*

Probab=99.63  E-value=2.5e-15  Score=103.27  Aligned_cols=115  Identities=13%  Similarity=0.238  Sum_probs=84.2

Q ss_pred             CCccccCCCeeeecCCCeEEEEEEEeeCCCCe-EEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEE
Q psy7036         112 APTFLKKPSIRQEDDGKRLLFECRIQADPAPT-VIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVT  190 (254)
Q Consensus       112 ~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~-~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~  190 (254)
                      +|.+...+....+.+|+.+.|.|.+.+.+.+. +.|++++..+...         +     ..|.|.+++.+|+|.|+|.
T Consensus         7 ~p~i~~~p~~~~v~~G~~v~L~C~~~~~p~~~~~~W~~~~~~~~~~---------~-----~~L~i~~~~~~d~G~Y~C~   72 (175)
T 1fnl_A            7 KAVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQ---------A-----SSYFIDAATVNDSGEYRCQ   72 (175)
T ss_dssp             CCEEEEESCCSEEETTCCEEEEEECCCBTTBCCCEEEETTEEEESS---------C-----SEEEESSCCGGGCEEEEEE
T ss_pred             CCEEEEcCCceeeeCCCcEEEEeeCCCCCCCcceEEEECCEEccCC---------c-----eEEEEeCCCcccCEEEEEE
Confidence            34444455555788999999999998887665 8899999876531         1     2799999999999999999


Q ss_pred             EEcCCCcceEEEEEEEecCCCCCCCCCCCCeeecCCccccccCCCCcEEEEEEEeccCCC-ceeC
Q psy7036         191 AKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLVGEPEP-TISW  254 (254)
Q Consensus       191 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~l~C~~~~~p~p-~~~W  254 (254)
                      +.|..+.  ..+.+.|..          ++.+...+. ..+.+|+ .+.|.|.+.+.|++ .+.|
T Consensus        73 ~~n~~~s--~~~~l~V~~----------~~~~~~~~~-~~~~~g~-~~~l~C~~~~~~~~~~~~W  123 (175)
T 1fnl_A           73 TNLSTLS--DPVQLEVHI----------GWLLLQAPR-WVFKEED-PIHLRCHSWKNTALHKVTY  123 (175)
T ss_dssp             CSSSCCC--CCEEEEEEC----------SSEEEECSC-SEEETTC-CEEEEEEECTTCCCEEEEE
T ss_pred             eeCCccc--ccEEEEEeC----------CCceeeCCC-ceecCCC-CEEEEEEcCCCCCceEEEE
Confidence            9885553  344555552          223333333 4567888 99999999988665 8888

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.63  E-value=5e-15  Score=91.92  Aligned_cols=92  Identities=24%  Similarity=0.491  Sum_probs=74.6

Q ss_pred             CCCccccCCCeeeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEE
Q psy7036         111 LAPTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVT  190 (254)
Q Consensus       111 ~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~  190 (254)
                      .+|.+...+....+..|+.+.|.|.+.+.|.+.+.|++++..+..... ++....++     .|.|.+++.+|.|.|+|.
T Consensus         7 ~~P~i~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~-~~~~~~~~-----~L~i~~v~~~d~G~Y~C~   80 (100)
T 2edj_A            7 GPPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDP-RATIQEQG-----TLQIKNLRISDTGTYTCV   80 (100)
T ss_dssp             SSCEEEECCCCEEEESSSEEEECCEEECSSCCEEEEEESSSEESSSCS-SCEECTTC-----CEEEESCCTTTCCEEEEE
T ss_pred             CCCEEEeCcCCEEEcCCCcEEEEEEEEEcCCCEEEEEECCEECCCCCC-CEEEcCCC-----EEEEccCCcccCEEEEEE
Confidence            456666666777888999999999999999999999999988763332 22333333     699999999999999999


Q ss_pred             EEcCCCcceEEEEEEEec
Q psy7036         191 AKNELGESNATISLNFDS  208 (254)
Q Consensus       191 ~~~~~~~~~~~~~~~v~~  208 (254)
                      +.|..|.....+.|.|..
T Consensus        81 a~n~~g~~~~~~~l~V~~   98 (100)
T 2edj_A           81 ATSSSGETSWSAVLDVTE   98 (100)
T ss_dssp             EECSSCCCBCCEEEEEES
T ss_pred             EEcCCCCEEEEEEEEEec
Confidence            999999888888888763

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X

Probab=99.63  E-value=2e-15  Score=106.95  Aligned_cols=124  Identities=20%  Similarity=0.323  Sum_probs=87.1

Q ss_pred             CeeeecCCCeEEEEEEEeeCC----CCeEEEEEC----------------CEeccc---CCcceEEEcC-CCCceeeEEE
Q psy7036         120 SIRQEDDGKRLLFECRIQADP----APTVIWSHS----------------GVQVKE---DKRHKFSIDK-DGHSYFASLE  175 (254)
Q Consensus       120 ~~~~~~~g~~~~l~C~~~~~~----~~~~~W~~~----------------~~~~~~---~~~~~~~~~~-~~~~~~~~l~  175 (254)
                      ..+.+.+|+.+.|.|.+.+.+    .+.+.|+++                +..+..   ....+..... +.......|.
T Consensus         8 ~~v~v~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~   87 (214)
T 3jz7_A            8 QRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGRVHFTSNDVKSGDASIN   87 (214)
T ss_dssp             EEEEEETTSCEEECCBCCCCTTCCSCCEEEEEEEESSSSCCSEEEEEEETTEEECCCCGGGTTTEEESCSCGGGTBCCEE
T ss_pred             ceEEEecCCCEEEEEEEecCCCCCCcEEEEEEecCCCCCCCceEEEEEeCCeEccccCCccccceEEeccCccCCcccEE
Confidence            456778999999999998876    468999983                332221   0111222221 0011123799


Q ss_pred             EccCCCCCceeEEEEEEcCCCcceEEEEEEEecCCCCCCCCCCCCeeecCCccccccCCCCcEEEEEEE-eccCCCceeC
Q psy7036         176 IIDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRL-VGEPEPTISW  254 (254)
Q Consensus       176 i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~l~C~~-~~~p~p~~~W  254 (254)
                      |.+++.+|+|.|+|.+.|..+.....+.|.|..          +|.+...+....+.+|+ .+.|.|.+ .|.|.|.+.|
T Consensus        88 i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~V~~----------~p~~~~~~~~~~~~~g~-~v~l~C~~~~g~p~~~v~W  156 (214)
T 3jz7_A           88 VTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLV----------KPSGTRCFVDGSEEIGN-DFKLKCEPKEGSLPLQFEW  156 (214)
T ss_dssp             ECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC----------CCBSCEEEEESCCBTTC-CEEEEEECSBCCSSCEEEE
T ss_pred             EccCChhhCeEEEEEEEeCCCccccEEEEEEEc----------CCCCceeeeecceecCC-cEEEEecCCCCCCCCEEEE
Confidence            999999999999999999988778888888875          23333333333467888 99999999 8999999998

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} SCOP: b.1.1.0

Probab=99.62  E-value=2.2e-15  Score=94.94  Aligned_cols=92  Identities=23%  Similarity=0.379  Sum_probs=67.0

Q ss_pred             CCCccccCCCeeeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEE
Q psy7036         111 LAPTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVT  190 (254)
Q Consensus       111 ~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~  190 (254)
                      .+|.+...+....+..|+.+.|.|.+.+.|.+.+.|++++..+.......+ ...+.     .|.|.+++.+|+|.|+|.
T Consensus         9 ~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~-~~~~~-----~L~i~~v~~~D~G~Y~C~   82 (108)
T 3kvq_A            9 VAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVL-KDGNR-----NLTIRRVRKEDEGLYTCQ   82 (108)
T ss_dssp             --CCCBSCCCCEEEETTCCEEEECBCC----CCEEEEESSSBCCCBTTEEE-ETTTT-----EEEECSCCGGGCEEEEEE
T ss_pred             CCCceecCCCCeEEeCCCeEEEEEECcCcCCCeEEEEECCeEcccCCCeEE-eCCCc-----EEEEeecCcccCEEEEEE
Confidence            466666667778889999999999999999999999999988765544332 22222     799999999999999999


Q ss_pred             EEcCCCcceEEEEEEEec
Q psy7036         191 AKNELGESNATISLNFDS  208 (254)
Q Consensus       191 ~~~~~~~~~~~~~~~v~~  208 (254)
                      +.|..|.....+.|.|..
T Consensus        83 a~n~~g~~~~~~~l~V~~  100 (108)
T 3kvq_A           83 ACSVLGCAKVEAFFIIEG  100 (108)
T ss_dssp             EC----CEEEEEEEEEEC
T ss_pred             EEeCCCceEEEEEEEEeC
Confidence            999999998888888875

>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus}

Probab=99.62  E-value=6.5e-15  Score=93.33  Aligned_cols=99  Identities=18%  Similarity=0.309  Sum_probs=72.4

Q ss_pred             CCCCCeeEeCCCceeecCCCeEEEEEEEeeC--CCCceEEEeCCEEeeeCCcceEEEeecC---CcceEEEEEEeccCCC
Q psy7036           5 EDFAPSFTQKPQLRQEDEGNRLIFECQLLCN--PKPDIVWFRGETQLSEDTRTVMKTTPIG---TNKYLVALELDDVIET   79 (254)
Q Consensus         5 ~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~--~~~~v~W~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~i~~~~~~   79 (254)
                      ...+|.|...|....+.+|++++|.|.+.+.  +.+.+.|+|++..+..............   .......|.|.+++..
T Consensus         7 ~~~~P~i~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~   86 (112)
T 3so5_A            7 DFPXPQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGELMEYTTILRLRNVEFT   86 (112)
T ss_dssp             -CCSCEEEECCCCEEECTTCCEEEEEEEEESCCCCCEEEEEETTEECTTCEEEEEEETTGGGSSCEEEEEEEEECSCCGG
T ss_pred             CCCCCeEEeCCCCcEEECCCCEEEEEEEecCCCCCEEEEEccCCcccccccccceeeeeccCCCccccceEEEEeccccc
Confidence            4568899999999999999999999999864  4578999999988754321111111000   1112358999999999


Q ss_pred             CCeEEEEEEEcCCCc-eEEEEEEEE
Q psy7036          80 DAGLYKVKAKNKMGE-VAASINLNF  103 (254)
Q Consensus        80 d~G~Y~C~~~~~~~~-~~~~~~l~v  103 (254)
                      |+|.|+|.+.|..|. ....+.|.|
T Consensus        87 D~G~Y~C~a~n~~g~~~s~~~~l~V  111 (112)
T 3so5_A           87 SEGXYQCVISNHFGSSYSVXAXLTI  111 (112)
T ss_dssp             GCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             cCCeEEEEEEeCCCcEEEeEEEEEe
Confidence            999999999999887 345666655

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens}

Probab=99.62  E-value=1.3e-14  Score=92.18  Aligned_cols=88  Identities=22%  Similarity=0.440  Sum_probs=71.2

Q ss_pred             CCCeeEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEE
Q psy7036           7 FAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKV   86 (254)
Q Consensus         7 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C   86 (254)
                      .+|.|...+....+.+|+++.|.|.+.+.  +.+.|||++..+....++.+...  +   ....|.|.+++.+|+|.|+|
T Consensus        18 ~pp~~~~~~~~~~v~~G~~v~l~C~~~~~--p~v~W~k~~~~l~~~~~~~~~~~--~---~~~~L~I~~v~~~D~G~Y~C   90 (113)
T 2edh_A           18 LPIKFTEGLRNEEATEGATAVLRCELSKM--APVEWWKGHETLRDGDRHSLRQD--G---ARCELQIRGLVAEDAGEYLC   90 (113)
T ss_dssp             SCCCEEECCCCCEECTTSCEEEEEEESSC--CCCEEEESSSBCCCSSSEEEEEE--T---TEEEEEECSCCSTTCEEEEE
T ss_pred             CCCcccccCCceEEeCCCeEEEEEEECCC--CcEEEEECCEECCCCCcEEEEEC--C---CEEEEEECCCChhhCEEEEE
Confidence            45689889999999999999999999764  78999999998877666555432  1   23479999999999999999


Q ss_pred             EEEcCCCceEEEEEEEEec
Q psy7036          87 KAKNKMGEVAASINLNFSR  105 (254)
Q Consensus        87 ~~~~~~~~~~~~~~l~v~~  105 (254)
                      .+    +.....+.|.|..
T Consensus        91 ~a----~~~~~~~~l~V~~  105 (113)
T 2edh_A           91 MC----GKERTSAMLTVRA  105 (113)
T ss_dssp             EE----TTEEEEEEEEECC
T ss_pred             Ee----CCCCEEEEEEEeC
Confidence            99    5567778888863

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.62  E-value=4.3e-16  Score=96.98  Aligned_cols=89  Identities=18%  Similarity=0.251  Sum_probs=70.0

Q ss_pred             CCCCeeEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCC----cceEEEeecCCcceEEEEEEeccCCCCC
Q psy7036           6 DFAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDT----RTVMKTTPIGTNKYLVALELDDVIETDA   81 (254)
Q Consensus         6 ~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~i~~~~~~d~   81 (254)
                      ..+|.|...+....+.+|++++|.|.+.+.+ +.+.|+|++..+....    ++.+.  ..+   ....|.|.+++..|+
T Consensus         6 ~~p~~~~~~~~~~~v~~G~~v~l~C~~~~~~-~~v~W~k~g~~i~~~~~~~~~~~~~--~~~---~~~~L~I~~~~~~D~   79 (101)
T 2edk_A            6 SGPVLIVTPLEDQQVFVGDRVEMAVEVSEEG-AQVMWMKNGVELTREDSFKARYRFK--KDG---KRHILIFSDVVQEDR   79 (101)
T ss_dssp             CCCCCEEECCCCEEEESSCCCBCCEEESCSS-CCCEEEESSCBCCCSCCSSCCCEEE--ECS---SEEEEECSSCCGGGC
T ss_pred             cCCCEEEecCCceEEcCCCCEEEEEEEeCCC-CEEEEEECCEECCCCCCcceeEEEE--ECC---CEEEEEECCCChhhC
Confidence            3577899999999999999999999999888 8999999999887665    33333  222   234799999999999


Q ss_pred             eEEEEEEEcCCCceEEEEEEEEe
Q psy7036          82 GLYKVKAKNKMGEVAASINLNFS  104 (254)
Q Consensus        82 G~Y~C~~~~~~~~~~~~~~l~v~  104 (254)
                      |.|+|.+.|    ....+.|.|.
T Consensus        80 G~Y~C~a~n----~~~~~~l~V~   98 (101)
T 2edk_A           80 GRYQVITNG----GQCEAELIVE   98 (101)
T ss_dssp             SBEEEECSS----CEECCBEEEE
T ss_pred             EEEEEEEcC----CcEEEEEEEe
Confidence            999999986    3344556664

>3bn3_B ICAM-5, intercellular adhesion molecule 5, telencephalin; I domain, integrin, allosteric mobility, cell adhesi immune system; HET: NAG; 2.10A {Homo sapiens}

Probab=99.62  E-value=3.5e-14  Score=97.77  Aligned_cols=167  Identities=11%  Similarity=0.123  Sum_probs=104.7

Q ss_pred             eeEeCCCceeecCCCeEEEEEEEeeCCCC-ceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEE
Q psy7036          10 SFTQKPQLRQEDEGNRLIFECQLLCNPKP-DIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKA   88 (254)
Q Consensus        10 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~   88 (254)
                      .+.+.|+...|.+|+++.|+|.+.. +.+ .+.|.-.-....      ..   .+  .....+.|.+++ +|.+.|.|.+
T Consensus         4 ~v~v~P~~~~V~~G~Sv~l~Cs~~c-~~p~~~~~~t~l~~~~------~~---~g--~~~~~~~ls~vs-~d~~~~~C~~   70 (196)
T 3bn3_B            4 WADLQPRVAFVERGGSLWLNCSTNC-PRPERGGLETSLRRNG------TQ---RG--LRWLARQLVDIR-EPETQPVCFF   70 (196)
T ss_dssp             CEEEESSEEEEETTEEEEEEEEECC-SSCSEEEEECSSEEEE------EE---EE--TTEEEEEEEEEC-SSEECCEEEE
T ss_pred             EEEEcCCCcEEcCCCeEEEEEeCCC-CCCCccEEEEccCCee------Ec---cc--cCceEEEEEEEc-cCCCceEEEE
Confidence            3556778888999999999999963 444 577753211100      00   00  111148899998 8888899998


Q ss_pred             EcCCCceEEEEEEEEeccccCCCCCccccCCCeeeecCCCeEEEEEEEeeC-CCCe--EEEEECCEecccCCcceEEEcC
Q psy7036          89 KNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQAD-PAPT--VIWSHSGVQVKEDKRHKFSIDK  165 (254)
Q Consensus        89 ~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~~--~~W~~~~~~~~~~~~~~~~~~~  165 (254)
                      ..........+.|.|..     .|...........+.+|+.++|.|.+.+. |...  +.|+|++..+......  ....
T Consensus        71 ~c~~~~~~~~v~l~Vy~-----~P~~v~i~~~~~~~~~G~~~tL~C~v~~~~P~~~L~i~wlkg~~~l~~~~~~--~~~~  143 (196)
T 3bn3_B           71 RCARRTLQARGLIRTFQ-----RPDRVELMPLPPWQPVGENFTLSCRVPGAGPRASLTLTLLRGAQELIRRSFA--GEPP  143 (196)
T ss_dssp             EETTEEEEEECEEEEEB-----CCCCCEECCCCSSEETTSEEEEEEEETTCBCGGGEEEEEEETTEEEEEEECT--TSCT
T ss_pred             ECCCCceEEEEEEEEec-----CCCcCEEccCCccccCCCcEEEEEEeCCccCCCCcEEEEEeCCEEeeccccc--cccc
Confidence            76555567788888863     22222233332236789999999999874 4433  8999999887532210  0001


Q ss_pred             CCCceeeEEEEccCCCCCceeEEEEEEcCCC
Q psy7036         166 DGHSYFASLEIIDVTIEDAGKYKVTAKNELG  196 (254)
Q Consensus       166 ~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~  196 (254)
                      +.....+.+.+...+.++...|+|.|.+..+
T Consensus       144 ~~~~~t~~~~~~~~r~D~g~~~sC~A~l~l~  174 (196)
T 3bn3_B          144 RARGAVLTATVLARREDHGANFSCRAELDLR  174 (196)
T ss_dssp             TCCCEEEEEEEECCGGGTTCEEEEEEEEECG
T ss_pred             cccceeEEEEEeeeeccCCCeEEEEEEccCC
Confidence            1111224566665555555599999998776

>1c1e_H Catalytic antibody 1E9 (heavy chain); diels-alder, immunoglobulin, immune system; HET: ENH; 1.90A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1dbb_H* 1dba_H* 1dbj_H* 1dbk_H* 1dbm_H* 2dbl_H* 3ojd_B 1jgl_H* 1jhk_H 1ghf_H 1tet_H* 3e8u_H 1fj1_B 1cl7_H

Probab=99.62  E-value=9.1e-15  Score=104.14  Aligned_cols=128  Identities=20%  Similarity=0.316  Sum_probs=83.6

Q ss_pred             CeeeecCCCeEEEEEEEeeCC--CCeEEEEEC--CEecc------c---------CCcceEEEcCCCCceeeEEEEccCC
Q psy7036         120 SIRQEDDGKRLLFECRIQADP--APTVIWSHS--GVQVK------E---------DKRHKFSIDKDGHSYFASLEIIDVT  180 (254)
Q Consensus       120 ~~~~~~~g~~~~l~C~~~~~~--~~~~~W~~~--~~~~~------~---------~~~~~~~~~~~~~~~~~~l~i~~~~  180 (254)
                      ....+..|+.+.|.|.+.+.+  .+.+.|+|+  +..+.      .         ....++....+.......|.|.+++
T Consensus         8 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~   87 (219)
T 1c1e_H            8 GPELKKPGETVKISCKASGYMFTNYGMNWVKQAPGKALKLMGWINPYTGESTFADDFKGRFAFFLETSATTAYLQINNLK   87 (219)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECSSSCCEEECGGGCSSEEEEEEGGGTEEEEEECSCC
T ss_pred             CCeEecCCCcEEEEEEEeCcccccceEEEEEeCCCCCcEEEEEEecCCCceEeCcccCCcEEEEEecCCCEEEEEECCCC
Confidence            345678899999999998865  678999987  32221      0         0011222211111112489999999


Q ss_pred             CCCceeEEEEEEcCCCc----ceEEEEEEEecCCCCCCCCCCCCeeecCCccccccCCCCcEEEEEEEec-cCCC-ceeC
Q psy7036         181 IEDAGKYKVTAKNELGE----SNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLVG-EPEP-TISW  254 (254)
Q Consensus       181 ~~d~G~y~C~~~~~~~~----~~~~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~l~C~~~~-~p~p-~~~W  254 (254)
                      .+|+|.|+|.+.|..+.    ......+.|....      ..+|.+...+....+.+|+ .+.|.|.+.| +|.| .++|
T Consensus        88 ~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~------~~~P~i~~~~~~~~~~~g~-~v~L~C~~~g~~P~p~~v~W  160 (219)
T 1c1e_H           88 NEDMATYFCARGTTIVRAMDYWGQGTSLTVSSAK------TTPPSVYPLAPGSAAQTNS-MVTLGCLVKGYFPEPVTVTW  160 (219)
T ss_dssp             GGGCEEEEEEEEETTTTEEEEECCCEEEEECCCC------CBCCEEEEECCCSSSCCSS-EEEEEEEEEEEBSSCCEEEE
T ss_pred             cccCEEEEEEEeccCcccceeecCceEEEEecCC------CCCCeEEEecCccccccCC-eEEEEEEcccccCCCeEEEE
Confidence            99999999999997632    1234456665311      1245554433333567788 9999999998 8998 8998

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.62  E-value=2.6e-14  Score=91.18  Aligned_cols=97  Identities=18%  Similarity=0.336  Sum_probs=72.2

Q ss_pred             CCccccCCCeeeecCCCeEEEEEEEeeC---CCCeEEEEECCEe-ccc--CCcceEE--EcCCCCceeeEEEEccCCCCC
Q psy7036         112 APTFLKKPSIRQEDDGKRLLFECRIQAD---PAPTVIWSHSGVQ-VKE--DKRHKFS--IDKDGHSYFASLEIIDVTIED  183 (254)
Q Consensus       112 ~~~~~~~~~~~~~~~g~~~~l~C~~~~~---~~~~~~W~~~~~~-~~~--~~~~~~~--~~~~~~~~~~~l~i~~~~~~d  183 (254)
                      .+.+...+..+.+.+|+.++|.|.+.+.   |.|.+.|+|+... +..  .....+.  .......+...|.|.++...|
T Consensus         7 ~~~F~~~P~~v~V~eG~~v~L~C~v~g~~~~p~P~V~W~Kgk~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D   86 (126)
T 2dav_A            7 GILFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNF   86 (126)
T ss_dssp             SCSCCSCCCCCEEETTCCEEEEEEEECCCSSSCCEEEEEESSSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCTTS
T ss_pred             ccEEEEcCCCeEEeCCCCEEEEEEEeccCCCCCCcEEEeeCcCcccCCCCCceEEEccccccccccceEEEEEccCCccc
Confidence            3456667778889999999999999875   7899999997421 111  1222221  112222344689999999999


Q ss_pred             ceeEEEEEEcCCCcceEEEEEEEec
Q psy7036         184 AGKYKVTAKNELGESNATISLNFDS  208 (254)
Q Consensus       184 ~G~y~C~~~~~~~~~~~~~~~~v~~  208 (254)
                      +|.|+|.|.|..+....++.|.|..
T Consensus        87 aG~Y~Cevsn~~g~~~~~~~L~V~~  111 (126)
T 2dav_A           87 AGNYRCEVTYKDKFDSCSFDLEVHE  111 (126)
T ss_dssp             CEEEEEEEECSSCEEEECCEEEEEC
T ss_pred             CEEEEEEEEeCCCcEEEEEEEEEEe
Confidence            9999999999999888888898886

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A

Probab=99.62  E-value=1.1e-14  Score=104.14  Aligned_cols=122  Identities=24%  Similarity=0.321  Sum_probs=82.4

Q ss_pred             CeeeecCCCeEEEEEEEeeCCCC---eEEEEECCEec-----------ccC----CcceEEEcC-CCCceeeEEEEccCC
Q psy7036         120 SIRQEDDGKRLLFECRIQADPAP---TVIWSHSGVQV-----------KED----KRHKFSIDK-DGHSYFASLEIIDVT  180 (254)
Q Consensus       120 ~~~~~~~g~~~~l~C~~~~~~~~---~~~W~~~~~~~-----------~~~----~~~~~~~~~-~~~~~~~~l~i~~~~  180 (254)
                      ..+.+..|+++.|.|.+.+.+.+   .+.|+|++...           ...    ...+..... ........|.|.+++
T Consensus        12 ~pV~v~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~   91 (226)
T 4f80_A           12 GPILAMVGEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQSAPYRGRTSILRDGITAGKAALRIHNVT   91 (226)
T ss_dssp             SCEEEETTSCEEEEEEEESCCCCTTSEEEEEETTTCCEEEEEETTEECGGGSCTTTTTTEEEECTTGGGTEEEEEESSCC
T ss_pred             CCEEEEcCCcEEEEEEEECCCCCCceEEEEEECCCCceEEEEeCCeEcccccCccccceEEEecccccCCeEEEEEeeCc
Confidence            34667889999999998876544   69999876321           110    001111111 111223589999999


Q ss_pred             CCCceeEEEEEEcCCCcceEEEEEEEecCCCCCCCCCCCCeeecCCccccccCCCCcEEEEEEEec-cCCCceeC
Q psy7036         181 IEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLVG-EPEPTISW  254 (254)
Q Consensus       181 ~~d~G~y~C~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~l~C~~~~-~p~p~~~W  254 (254)
                      .+|+|.|+|.|.|..+.....+.+.+..            .....+....+.+|+ .+.|.|.+.| .|.|.++|
T Consensus        92 ~~D~G~Y~C~a~n~~~~~~~~v~~~~~~------------~~~~~~~~~~~~~g~-~v~l~c~~~g~~P~p~i~W  153 (226)
T 4f80_A           92 ASDSGKYLCYFQDGDFYEKALVELKVAA------------LGSDLHVDVKGYKDG-GIHLECRSTGWYPQPQIQW  153 (226)
T ss_dssp             GGGCEEEEEEEEETTEEEEEEEEEEEEB------------CCCCCEEEEEEEETT-EEEEEEEEEEEBSCCEEEE
T ss_pred             hHHCeeEEEEEECCCcEEEEEEEEeecc------------ceecccceeeeccCC-ceeeEEEeccCCCCCEEEE
Confidence            9999999999999888777666655542            112223334566788 9999999988 59999999

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3

Probab=99.62  E-value=2e-15  Score=103.80  Aligned_cols=112  Identities=21%  Similarity=0.304  Sum_probs=79.6

Q ss_pred             eeecCCCeEEEEEEEee--CCCCeEEEEECCEeccc--------CCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEE
Q psy7036         122 RQEDDGKRLLFECRIQA--DPAPTVIWSHSGVQVKE--------DKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTA  191 (254)
Q Consensus       122 ~~~~~g~~~~l~C~~~~--~~~~~~~W~~~~~~~~~--------~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~  191 (254)
                      +.+.+|+.+.|.|....  .+.+.+.|+|++..+..        ....++....++     .|.|.+++.+|+|.|+|.+
T Consensus         6 v~~~~G~~v~L~c~~~~~~~~~~~i~W~k~~~~i~~~~~~~~~~~~~~r~~~~~~g-----sL~I~~v~~~D~G~Y~C~~   80 (176)
T 1hng_A            6 VWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANG-----DLKIKNLTRDDSGTYNVTV   80 (176)
T ss_dssp             EEEETTSCEEECCTTCCCCTTEEEEEEEETTEEEEEEETTSCCEESSTTEEECTTS-----CEEESSCCGGGCEEEEEEE
T ss_pred             EEEEcCCcEEEcCCCCCcccccccEEEEeCCceeEEEcCCCeecCCCCeEEECCCC-----cEEEcccccccCEEEEEEE
Confidence            45678999999995333  45668999999875431        011223333343     6999999999999999999


Q ss_pred             EcCCCcc--eEEEEEEEecCCCCCCCCCCCCeeecCCccccccCCCCcEEEEEEEeccCCCceeC
Q psy7036         192 KNELGES--NATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLVGEPEPTISW  254 (254)
Q Consensus       192 ~~~~~~~--~~~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~l~C~~~~~p~p~~~W  254 (254)
                      .|..|..  ...+.|.|...       ...|.+..        .+. .+.|.|.+.|.|.|.++|
T Consensus        81 ~n~~g~~~~~~~~~l~V~~~-------~~~p~i~~--------~~~-~v~L~C~~~g~p~p~i~W  129 (176)
T 1hng_A           81 YSTNGTRILNKALDLRILEM-------VSKPMIYW--------ECS-NATLTCEVLEGTDVELKL  129 (176)
T ss_dssp             EETTCCEEEEEEEEEEEECC-------CCCCEEEE--------ETT-TTEEEEECSSCSSCEEEE
T ss_pred             EeCCCCEEEEEEEEEEEeCC-------CCCCEEEe--------cCC-cEEEEEEecCCCCcEEEE
Confidence            9998886  66677777641       11333332        234 689999999999999999

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X

Probab=99.62  E-value=3e-14  Score=88.77  Aligned_cols=84  Identities=24%  Similarity=0.418  Sum_probs=66.9

Q ss_pred             cCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEEc-CCCCceeeEEEEccCCCCCceeEEEEEEcCCCcceEEEE
Q psy7036         125 DDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSID-KDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATIS  203 (254)
Q Consensus       125 ~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~  203 (254)
                      ..+..+.|.|.+.|.|.|.+.|+|++..+........... .+.....+.|.|.++..+|+|.|+|.|.|..|....++.
T Consensus        14 ~~~~~~~~~c~v~G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~   93 (103)
T 1wwb_X           14 TSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQIS   93 (103)
T ss_dssp             CCCCEEEEEEEEECSSCCEEEEEETTEEECCCSSEEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEE
T ss_pred             eECcEEEEEEEEEEeCCCEEEEEECCEECCCCCcEeEEEEecCCcEEEEEEEECCCCcccCEEEEEEEEeCCCcEeEEEE
Confidence            3578899999999999999999999999876643222221 122334457999999999999999999999999988888


Q ss_pred             EEEec
Q psy7036         204 LNFDS  208 (254)
Q Consensus       204 ~~v~~  208 (254)
                      |.|..
T Consensus        94 l~V~~   98 (103)
T 1wwb_X           94 AHFMG   98 (103)
T ss_dssp             ECCSC
T ss_pred             EEECC
Confidence            87764

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens}

Probab=99.62  E-value=2.1e-14  Score=88.57  Aligned_cols=87  Identities=20%  Similarity=0.373  Sum_probs=71.2

Q ss_pred             CCCeeeecCCCeEEEEEEEeeC-CCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCC
Q psy7036         118 KPSIRQEDDGKRLLFECRIQAD-PAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELG  196 (254)
Q Consensus       118 ~~~~~~~~~g~~~~l~C~~~~~-~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~  196 (254)
                      .+....+.+|+.+.|.|.+.+. |.+.+.|++++..+.......+.....    .+.|.|.+++.+|.|.|+|.+.|..|
T Consensus         7 ~~~~~~v~~G~~v~l~C~~~g~~p~~~v~W~~~~~~~~~~~~~~~~~~~~----~~~L~i~~v~~~D~G~Y~C~a~n~~g   82 (97)
T 2bk8_A            7 QIMHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYEDG----VAILYVKDITKLDDGTYRCKVVNDYG   82 (97)
T ss_dssp             CCCCEEECTTCCEEEEEEEESCCTTCEEEEEETTEECCSSSSEEEEEETT----EEEEEECSCCGGGCEEEEEEEECSSC
T ss_pred             cCcCEEEcCCCcEEEEEEEeccCCCCEEEEEECCEECcCCCCEEEEEcCC----eEEEEEecCChhhCeEEEEEEECCCC
Confidence            3456778899999999999997 889999999999887665544433222    23799999999999999999999999


Q ss_pred             cceEEEEEEEec
Q psy7036         197 ESNATISLNFDS  208 (254)
Q Consensus       197 ~~~~~~~~~v~~  208 (254)
                      ....++.|.|..
T Consensus        83 ~~~~~~~l~V~~   94 (97)
T 2bk8_A           83 EDSSYAELFVKG   94 (97)
T ss_dssp             EEEEEEEEEETT
T ss_pred             eEeEEEEEEEEe
Confidence            988888888763

>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.62  E-value=5.1e-15  Score=92.37  Aligned_cols=90  Identities=14%  Similarity=0.330  Sum_probs=68.6

Q ss_pred             CCCCCeeEeCCCc-eeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeC-CcceEEEeecCCcceEEEEEEeccCCCCCe
Q psy7036           5 EDFAPSFTQKPQL-RQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSED-TRTVMKTTPIGTNKYLVALELDDVIETDAG   82 (254)
Q Consensus         5 ~~~~p~~~~~~~~-~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G   82 (254)
                      ...+|.|+..+.. ..+.+|++++|.|.+ +.|.+.+.|+|+|..+... .++.+...  +.   ...|.|.+++.+|+|
T Consensus        12 ~~~~p~f~~~~~~~~~v~~G~~v~L~C~~-~~p~~~v~W~k~g~~l~~~~~~~~~~~~--~~---~~~L~I~~v~~~D~G   85 (104)
T 1pd6_A           12 EKKSTAFQKKLEPAYQVSKGHKIRLTVEL-ADHDAEVKWLKNGQEIQMSGSKYIFESI--GA---KRTLTISQCSLADDA   85 (104)
T ss_dssp             CSTTSSCSEECCSEEEEETTSCEEEEEEC-SSSSSCCEEEESSSEECCCSSSSEEEEE--TT---EEEEEECSCSSSSCE
T ss_pred             ccCCCEEEEcCCCcEEEecCCCEEEEEEE-cCCCCEEEEEECCEECCCCCCeEEEEec--CC---EEEEEECCCCcccCE
Confidence            3457888777666 789999999999999 6888899999999988766 55544322  21   347999999999999


Q ss_pred             EEEEEEEcCCCceEEEEEEEEe
Q psy7036          83 LYKVKAKNKMGEVAASINLNFS  104 (254)
Q Consensus        83 ~Y~C~~~~~~~~~~~~~~l~v~  104 (254)
                      .|+|.+.+    ....+.|.|.
T Consensus        86 ~Y~C~a~~----~~~~~~l~V~  103 (104)
T 1pd6_A           86 AYQCVVGG----EKCSTELFVK  103 (104)
T ss_dssp             EEEEEETT----EEECCEEEEE
T ss_pred             EEEEEECC----CcEEEEEEEe
Confidence            99999943    3445555553

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C*

Probab=99.61  E-value=1.3e-15  Score=108.36  Aligned_cols=128  Identities=13%  Similarity=0.025  Sum_probs=87.6

Q ss_pred             CCCccccCCCeeeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCCCCceee--EEEEccCCCCCceeEE
Q psy7036         111 LAPTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFA--SLEIIDVTIEDAGKYK  188 (254)
Q Consensus       111 ~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~i~~~~~~d~G~y~  188 (254)
                      .+|.+...+. ..+.+|+.++|.|.+.+ +.+.+.|+|++..+..... ......+    ..  .|.|.+++.+|+|.|+
T Consensus         8 ~~P~i~~~p~-~~v~~G~~vtL~C~~~~-~~~~~~W~k~g~~~~~~~~-~~~~~~~----~~~~~L~I~~v~~~D~G~Y~   80 (218)
T 1uct_A            8 PMPFISAKSS-PVIPLDGSVKIQCQAIR-EAYLTQLMIIKNSTYREIG-RRLKFWN----ETDPEFVIDHMDANKAGRYQ   80 (218)
T ss_dssp             CCCCEEESSC-SEEETTCCEEEEECCCT-TCSEEEEEEEETTEEEECS-EECC--------CCCEEEECSCCGGGCEEEE
T ss_pred             CCCEEEecCC-CccCCCCCEEEEEEcCC-CCCEEEEEECCCccccccc-ccCCCCc----ceeeEEEEcccccccCEEEE
Confidence            3455554444 46788999999999876 6778999998865532211 1000001    12  6999999999999999


Q ss_pred             EEEEcCCCcc--eEEEEEEEecCCCCCCCCCCCCeeecCCccccccCCCCcEEEEEEEeccCCCceeC
Q psy7036         189 VTAKNELGES--NATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLVGEPEPTISW  254 (254)
Q Consensus       189 C~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~l~C~~~~~p~p~~~W  254 (254)
                      |.+.|..+..  +..+.|.|...       ..+|.+...+ ...+.+|+ .++|.|.+.+.|.+.+.|
T Consensus        81 C~a~n~~~~~~~s~~~~l~V~~~-------~~~P~i~~~p-~~~v~~G~-~v~L~C~~~~~~~~~~~W  139 (218)
T 1uct_A           81 CQYRIGHYRFRYSDTLELVVTGL-------YGKPFLSADR-GLVLMPGE-NISLTCSSAHIPFDRFSL  139 (218)
T ss_dssp             EEEEETTTEEEECCCEEEEEECS-------SCCCEEEESS-CSEECTTC-CCEEEEECSSSCCSEEEE
T ss_pred             EEEEcCCCceeecCCEEEEEcCc-------ccCCEEEeCC-CCccCCCC-CEEEEEeCCCCCCCEEEE
Confidence            9999986533  34456666531       2256666555 34678899 999999777777788887

>2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin, glycosylation, immune system; HET: NAG FUC MAN GAL; 2.13A {Mus musculus}

Probab=99.61  E-value=2.7e-15  Score=106.78  Aligned_cols=124  Identities=15%  Similarity=0.209  Sum_probs=81.3

Q ss_pred             ecCCCeEEEEEEEeeC---CC-CeEEEEECCEecccCCcceEEEcCCCC-ceeeEEEEccCCCCCceeEEEEEEcCCCcc
Q psy7036         124 EDDGKRLLFECRIQAD---PA-PTVIWSHSGVQVKEDKRHKFSIDKDGH-SYFASLEIIDVTIEDAGKYKVTAKNELGES  198 (254)
Q Consensus       124 ~~~g~~~~l~C~~~~~---~~-~~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~  198 (254)
                      +..|+.+.|.|.+.+.   |. +.+.|+|++..+............++. ...+.|.|.+++.+|.|.|+|.+.|..+..
T Consensus        23 v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~g~Y~C~~~~~~~~~  102 (218)
T 2rgs_A           23 LMISLTPKVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTIRVVSTLPIQHQDWMSGKEFKCKVNNKDLPS  102 (218)
T ss_dssp             HCTTSCCEEEEEEEEECTTSCCEEEEEEETTEEECCCEEEEEEETTTTEEEEEEEEECCHHHHHTTCCEEEEEEETTCSS
T ss_pred             hccCCCeeEEEEEcCCccCCCceEEEEEECCccccCcccccccccCCCeEEEEEEEEEcHHHcCCCCeEEEEEECCcCCC
Confidence            6789999999999886   33 689999999776532211111111221 234579999999999999999999987654


Q ss_pred             eEEEEEEEecCCCCCCCCCCCCeeecCCccccccCCCCcEEEEEEEec-cCCC-ceeC
Q psy7036         199 NATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLVG-EPEP-TISW  254 (254)
Q Consensus       199 ~~~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~l~C~~~~-~p~p-~~~W  254 (254)
                      .....+....      ....+|.+...+......+|+ .+.|.|.+.| +|.+ .++|
T Consensus       103 ~~~~~v~~~~------~~~~~P~v~~~~~~~~~~~g~-~~~L~C~~~g~~P~~~~v~W  153 (218)
T 2rgs_A          103 PIERTISKIK------GLVRAPQVYILPPPAEQLSRK-DVSLTCLVVGFNPGDISVEW  153 (218)
T ss_dssp             CEEEEECCCC------CCCBCCEEEEECCCGGGTTSS-EEEEEEEEEEEBSSCCEEEE
T ss_pred             cceEEEeecC------CCCCCCEEEEECCChHHhcCC-ceEEEEEEEeeeCCCcEEEE
Confidence            2222221100      012356665444333334678 9999999999 5766 7998

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.61  E-value=8.3e-16  Score=94.72  Aligned_cols=85  Identities=16%  Similarity=0.315  Sum_probs=68.4

Q ss_pred             CCCCCeeEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEE
Q psy7036           5 EDFAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLY   84 (254)
Q Consensus         5 ~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y   84 (254)
                      ...+|.|...|....+.+|++++|.|.+.+.|.+.+.|+|++..+.....              ..|.|.+++..|+|.|
T Consensus         7 ~~~~~~i~~~p~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~~~~~~~~~~--------------~~L~i~~v~~~d~G~Y   72 (96)
T 2ens_A            7 GLEEVQLVVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLPPS--------------PVLILPEIGPQDQGTY   72 (96)
T ss_dssp             CCCSCCCEEESTTSEECTTCEEEEECCCSSCSSCCCCCEESSSBCSSCCC--------------SEEEEESCCTTTCEEE
T ss_pred             CCCCCEEEECCCCCEEcCCCeEEEEEEEccCCCCEEEEEECCEECcCCCC--------------CEEEECCCCcccCEEE
Confidence            34567888899888999999999999999889899999999887654321              1799999999999999


Q ss_pred             EEEEEcCCCceE--EEEEEEE
Q psy7036          85 KVKAKNKMGEVA--ASINLNF  103 (254)
Q Consensus        85 ~C~~~~~~~~~~--~~~~l~v  103 (254)
                      +|.+.|..+...  ..+.|.|
T Consensus        73 ~C~a~n~~~~~~~s~~~~v~V   93 (96)
T 2ens_A           73 SCVATHSSHGPQESRAVSISI   93 (96)
T ss_dssp             ECEECCSSCCCEECCCEEEEE
T ss_pred             EEEEEeCCCCcEEEEEEEEEE
Confidence            999999655433  3445554

>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus}

Probab=99.61  E-value=1e-14  Score=91.84  Aligned_cols=94  Identities=18%  Similarity=0.176  Sum_probs=70.4

Q ss_pred             CCCCeeEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeCCE-EeeeC-------CcceEEEeecCCcceEEEEEEeccC
Q psy7036           6 DFAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGET-QLSED-------TRTVMKTTPIGTNKYLVALELDDVI   77 (254)
Q Consensus         6 ~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~-~~~~~-------~~~~~~~~~~~~~~~~~~l~i~~~~   77 (254)
                      ...|.|...+....+.+|++++|.|.+.+.+.+.+.|++++. .+...       .++.+...  .  .....|.|.+++
T Consensus         4 ~~~p~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~--~--~~~~~L~I~~v~   79 (108)
T 3m45_A            4 KGSQGQFPLTQNVTVVEGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRA--S--WHELSISVSDVS   79 (108)
T ss_dssp             ----CCCEECCCEEEETTSCEEEEEEESSCSSCCEEEECTTCCEEEETTEECSCCTTEEEEEE--S--SSEEEEEECSCC
T ss_pred             ccCCCccccCCeeEEEeCCcEEEEeEEcCCCccEEEEEcCCCceEEEcCCcccccCcEEEeec--C--CCcEEEEECCCC
Confidence            346778888889999999999999999988889999999875 33221       13222211  1  134489999999


Q ss_pred             CCCCeEEEEEEEcCCCceEEEEEEEEe
Q psy7036          78 ETDAGLYKVKAKNKMGEVAASINLNFS  104 (254)
Q Consensus        78 ~~d~G~Y~C~~~~~~~~~~~~~~l~v~  104 (254)
                      ..|+|.|+|.+.| .+.....+.|.|.
T Consensus        80 ~~D~G~Y~C~~~n-~~~~~~~~~L~V~  105 (108)
T 3m45_A           80 LSDEGQYTCSLFT-MPVKTSKAYLTVL  105 (108)
T ss_dssp             GGGCEEEEEEECS-SSCEEEEEEEEEE
T ss_pred             hhHCeEEEEEEEc-CCCcEEEEEEEEE
Confidence            9999999999999 7777788888876

>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A

Probab=99.61  E-value=7.5e-15  Score=92.50  Aligned_cols=90  Identities=23%  Similarity=0.382  Sum_probs=71.2

Q ss_pred             CCCCCeeEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEE
Q psy7036           5 EDFAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLY   84 (254)
Q Consensus         5 ~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y   84 (254)
                      ...+|.|...+....+.+|++++|.|.+.+.  +.+.|+|++..+....++.+...  +   ..+.|.|.+++..|+|.|
T Consensus         5 ~~~pp~~~~~~~~~~v~~G~~v~l~C~~~~~--p~v~W~k~~~~~~~~~~~~~~~~--~---~~~~L~I~~v~~~D~G~Y   77 (108)
T 2dm7_A            5 SSGPARFTQDLKTKEASEGATATLQCELSKV--APVEWKKGPETLRDGGRYSLKQD--G---TRCELQIHDLSVADAGEY   77 (108)
T ss_dssp             SCCCCCBCSCCBCCEEETTSCEEEEEEBSSS--CCCEEESSSSBCCSSSSCEEEEE--T---TEEEEEESSCCTTTCSEE
T ss_pred             cCCCCeeeecCCcEEEeCCCcEEEEEEeCCC--CeeEEEECCEECCCCCCEEEEec--C---CEEEEEECCCCcccCEEE
Confidence            4568899988999999999999999999754  68999999998876666555432  1   234799999999999999


Q ss_pred             EEEEEcCCCceEEEEEEEEec
Q psy7036          85 KVKAKNKMGEVAASINLNFSR  105 (254)
Q Consensus        85 ~C~~~~~~~~~~~~~~l~v~~  105 (254)
                      +|.+.|    ....+.|.|..
T Consensus        78 ~C~a~n----~~~~~~l~V~~   94 (108)
T 2dm7_A           78 SCMCGQ----ERTSATLTVRA   94 (108)
T ss_dssp             EEEETT----EEEEEECEEEC
T ss_pred             EEEEcC----CEEEEEEEEec
Confidence            999943    45666777763

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A

Probab=99.61  E-value=5.7e-14  Score=88.37  Aligned_cols=97  Identities=16%  Similarity=0.270  Sum_probs=70.9

Q ss_pred             CCCccccCCCeeeecCCCeEEEEEEEeeCCC---CeEEEEECCEeccc-C--CcceEE--EcCCCCceeeEEEEccCCCC
Q psy7036         111 LAPTFLKKPSIRQEDDGKRLLFECRIQADPA---PTVIWSHSGVQVKE-D--KRHKFS--IDKDGHSYFASLEIIDVTIE  182 (254)
Q Consensus       111 ~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~---~~~~W~~~~~~~~~-~--~~~~~~--~~~~~~~~~~~l~i~~~~~~  182 (254)
                      ..|.+...+..+.+..|+.++|.|.+.+.|.   +.+.|+|++..... .  ....+.  ...........|.|.+++.+
T Consensus         3 p~p~f~~~p~~~~v~~G~~v~L~C~~~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~   82 (108)
T 3cx2_A            3 PIGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPA   82 (108)
T ss_dssp             CCCSCSBCCCCEEEETTCCEEEEEEEECC-CCSCCEEEEEETTTEEGGGGCBTTEEEEEEEETTTTEEEEEEEECSCCGG
T ss_pred             CccEEEeCCCcEEEeCCCCEEEEEEECCCccCCCcEEEEccCCcccccccCCceEEEeeEEecccccceEEEEEecCCCc
Confidence            3456667777888999999999999999988   99999998732211 1  111111  11111223458999999999


Q ss_pred             CceeEEEEEEcCCCcceEEEEEEEe
Q psy7036         183 DAGKYKVTAKNELGESNATISLNFD  207 (254)
Q Consensus       183 d~G~y~C~~~~~~~~~~~~~~~~v~  207 (254)
                      |+|.|+|.+.|..|....++.|.|.
T Consensus        83 D~G~Y~C~a~N~~G~~~~~~~L~V~  107 (108)
T 3cx2_A           83 FTGSYRCEVSTKDKFDCSNFNLTVH  107 (108)
T ss_dssp             GCEEEEEEEECSSCEEEEEEEEEEE
T ss_pred             cCEEEEEEEecCCCceEEEEEEEEe
Confidence            9999999999999998888888774

>4acp_A IG gamma-1 chain C region; immune system, antibody, kifunensine; HET: NAG; 2.49A {Homo sapiens} PDB: 2j6e_A*

Probab=99.60  E-value=2.4e-15  Score=108.22  Aligned_cols=158  Identities=14%  Similarity=0.221  Sum_probs=82.0

Q ss_pred             eEEEEEEEcCCCceEEEEEEEEeccccCCCCCccccCCCeee-ecCCCeEEEEEEEeeCC----CCeEEEEECCEecccC
Q psy7036          82 GLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQ-EDDGKRLLFECRIQADP----APTVIWSHSGVQVKED  156 (254)
Q Consensus        82 G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~-~~~g~~~~l~C~~~~~~----~~~~~W~~~~~~~~~~  156 (254)
                      |.|.|.+.+..+.  ......+      ..|..+...+.... +..|+.+.|.|.+.+++    ...+.|+++|..+...
T Consensus         1 ~~~~~~~~~~~~~--c~~~~~~------~~P~v~i~~ps~~~~l~~g~~~~L~C~v~g~~p~P~~i~v~W~k~g~~l~~~   72 (240)
T 4acp_A            1 GTKSCDKTHTCPP--CPAPELL------GGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNA   72 (240)
T ss_dssp             ------------------------------CEEEEECCCHHHHHSSSSCCEEEEEEESCCC--CCCEEEEEETTEEECCC
T ss_pred             CceeeeeeecCCC--CCccccC------CCCEEEEECcChHHhcccCCCcEEEEEEeccccCCCccEEEEEECCcccCCc
Confidence            6789988876543  1111111      12222333334444 45699999999999874    3379999999987543


Q ss_pred             CcceEEEcCCC-CceeeEEEEccCCCCCceeEEEEEEcCCCcceEEEEEEEecCCCCCCCCCCCCeeecCCccccccCCC
Q psy7036         157 KRHKFSIDKDG-HSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDL  235 (254)
Q Consensus       157 ~~~~~~~~~~~-~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~g~  235 (254)
                      .........++ +...+.|.|.....+|.|.|+|.|.|..+.......+....      ....+|.+...+.......|+
T Consensus        73 ~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~~YtC~v~h~~~~~~~~~~i~~~~------~~~~~P~V~v~~~~~~~~~g~  146 (240)
T 4acp_A           73 KTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAK------GQPREPQVYTLPPSRDELTKN  146 (240)
T ss_dssp             EECCCEEC---CEEEEEEEECCHHHHHHTCCEEEEEECC----CEEEEECCCC------SCCBCCEEEEECCCGGGGGSS
T ss_pred             eeccceECCCCeEEEEEEEEEechhccCCCEEEEEEEcCCCCccccccccccC------CCCCCCEEEEECCChHHhcCC
Confidence            22222222222 23346788887777789999999999876443333332111      012356665554444444577


Q ss_pred             CcEEEEEEEecc-CCC-ceeC
Q psy7036         236 NDIVIECRLVGE-PEP-TISW  254 (254)
Q Consensus       236 ~~~~l~C~~~~~-p~p-~~~W  254 (254)
                       .+.|.|.+.|. |.+ .++|
T Consensus       147 -~~~L~C~~~gf~P~~i~v~W  166 (240)
T 4acp_A          147 -QVSLTCLVKGFYPSDIAVEW  166 (240)
T ss_dssp             -EEEEEEEEEEEBSSCCEEEE
T ss_pred             -ceEEEEEEeEEeCCCcEEEE
Confidence             99999999995 654 6888

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.60  E-value=1.1e-14  Score=90.16  Aligned_cols=90  Identities=21%  Similarity=0.328  Sum_probs=71.7

Q ss_pred             CCCccccCCCeeeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEE
Q psy7036         111 LAPTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVT  190 (254)
Q Consensus       111 ~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~  190 (254)
                      .++.+...+....+.+|+.+.|.|.+  .|.+.+.|+|+|..+....+..+...  +.  ...|.|.++..+|+|.|+|.
T Consensus         6 ~p~~~~~~~~~~~v~~G~~v~l~C~v--~p~p~v~W~k~g~~l~~~~r~~i~~~--~~--~~~L~I~~v~~~D~G~Y~C~   79 (100)
T 2yuz_A            6 SGLKILTPLTDQTVNLGKEICLKCEI--SENIPGKWTKNGLPVQESDRLKVVQK--GR--IHKLVIANALTEDEGDYVFA   79 (100)
T ss_dssp             CCCCCSBCCCCEEEETTSCCCEEEEC--SSCCCEEEEETTEECCCCSSEEEEEC--SS--EEEEEESSCCGGGCSEEEEE
T ss_pred             CCCEEeccCCceEEcCCCCEEEEEEe--CCCCeEEEEECCEECCCCCcEEEEEe--CC--EEEEEECCCChhhCEEEEEE
Confidence            45666777778889999999999999  78889999999999876665554433  22  13799999999999999999


Q ss_pred             EEcCCCcceEEEEEEEec
Q psy7036         191 AKNELGESNATISLNFDS  208 (254)
Q Consensus       191 ~~~~~~~~~~~~~~~v~~  208 (254)
                      |.|.  ....+..|.|..
T Consensus        80 a~N~--~~~~~a~L~V~~   95 (100)
T 2yuz_A           80 PDAY--NVTLPAKVHVIS   95 (100)
T ss_dssp             ESSS--CCCEEEEEEEEC
T ss_pred             EcCC--CeeEEEEEEEeC
Confidence            9997  455666777764

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X

Probab=99.60  E-value=6.3e-15  Score=95.00  Aligned_cols=94  Identities=18%  Similarity=0.294  Sum_probs=66.7

Q ss_pred             CCCceeecCCCeEEEEEEEeeC--CCCceEEEeCCEEeeeC---CcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEE
Q psy7036          14 KPQLRQEDEGNRLIFECQLLCN--PKPDIVWFRGETQLSED---TRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKA   88 (254)
Q Consensus        14 ~~~~~~v~~g~~v~l~C~~~~~--~~~~v~W~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~   88 (254)
                      .+..+.+.+|++++|.|.+.|.  +.+.+.|++++..+...   ................+.|.|.+++..|+|.|+|.+
T Consensus        14 p~~~v~v~~G~~v~L~C~~~g~p~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a   93 (122)
T 3s35_X           14 PSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAA   93 (122)
T ss_dssp             SCSCEEEEETCCEEEEEEEEECTTCCCEEEEECSCTTCCHHHHBCCSCCEEEETTEEEEEEEEEESSCCGGGCEEEEEEE
T ss_pred             CCCCEEEecCCeEEEEEEEEcCCCCcEEEEEECCCcccCCceeeeeccccccCCceeeEEEEEEECCCCcccCEEEEEEE
Confidence            3444588999999999999984  45789999988743210   010111111111123347999999999999999999


Q ss_pred             EcCCCceEEEEEEEEeccc
Q psy7036          89 KNKMGEVAASINLNFSREQ  107 (254)
Q Consensus        89 ~~~~~~~~~~~~l~v~~~~  107 (254)
                      .|..|.....+.|.|.+.+
T Consensus        94 ~n~~g~~~~~~~l~V~~~p  112 (122)
T 3s35_X           94 SSGLMTKKNSTFVRVHEKP  112 (122)
T ss_dssp             ECSSCEEEEEEEEEEEEEE
T ss_pred             ccCCCceEEEEEEEEeccC
Confidence            9999998889999987543

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A*

Probab=99.60  E-value=2e-15  Score=103.83  Aligned_cols=115  Identities=17%  Similarity=0.264  Sum_probs=82.3

Q ss_pred             CCccccCCCeeeecCCCeEEEEEEEeeCCCC-eEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEE
Q psy7036         112 APTFLKKPSIRQEDDGKRLLFECRIQADPAP-TVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVT  190 (254)
Q Consensus       112 ~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~  190 (254)
                      +|.+...+....+.+|+.+.|.|.+.+.+.+ .+.|++++..+...         +     ..|.|.+++.+|+|.|+|.
T Consensus         4 ~P~i~~~p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~~---------~-----~~L~i~~v~~~d~G~Y~C~   69 (176)
T 1f2q_A            4 KPKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEET---------N-----SSLNIVNAKFEDSGEYKCQ   69 (176)
T ss_dssp             CCCCEEESSCSEEETTCCEEEECCTTCC----CCEEEETTEECSCC---------S-----SEEEECSCCGGGCEEEEEE
T ss_pred             CCEEEcCCCCcceecCCcEEEEEeCCCCCCcceEEEEECCeECCCC---------c-----eEEEEeccceecCEEEEEE
Confidence            4455555555678899999999999888775 69999999876532         1     2799999999999999999


Q ss_pred             EEcCCCcceEEEEEEEecCCCCCCCCCCCCeeecCCccccccCCCCcEEEEEEEe-ccCCCceeC
Q psy7036         191 AKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLV-GEPEPTISW  254 (254)
Q Consensus       191 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~l~C~~~-~~p~p~~~W  254 (254)
                      +.|..+...  +.+.|..          ++.+...+ ...+.+|+ .+.|.|.+. +.|.+.+.|
T Consensus        70 ~~~~~~s~~--~~l~V~~----------~~~~~~~~-~~~~~~g~-~~~l~C~~~~~~p~~~~~W  120 (176)
T 1f2q_A           70 HQQVNESEP--VYLEVFS----------DWLLLQAS-AEVVMEGQ-PLFLRCHGWRNWDVYKVIY  120 (176)
T ss_dssp             CTTSSCCCC--EEEEEEC----------SSEEEEES-CSEEETTS-CEEEEEEEGGGCCEEEEEE
T ss_pred             cCCcccccc--EEEEEeC----------cceeecCC-cceeeCCC-CEEEEEEecCCCCceEEEE
Confidence            988665444  4455542          23333222 34667888 999999995 566678888

>1ntl_A CRRY-IG; immunology, complement, glycoprotein, SCR, CCP, immune system; NMR {Mus musculus}

Probab=99.60  E-value=9.6e-14  Score=111.94  Aligned_cols=183  Identities=14%  Similarity=0.187  Sum_probs=113.1

Q ss_pred             eEeCCCcee-ecCCCeEEEEEEEeeCCC----CceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEE
Q psy7036          11 FTQKPQLRQ-EDEGNRLIFECQLLCNPK----PDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYK   85 (254)
Q Consensus        11 ~~~~~~~~~-v~~g~~v~l~C~~~~~~~----~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~   85 (254)
                      |...+.... +..+.+..|.|.+.+...    ..|+|++++..+............++.....+.|.|......|.+.|+
T Consensus       345 fl~~~~~~~~~~~~~~~~l~C~~~~~~p~~~~i~v~W~~~~~~~~~~~t~~~~~~~n~~~~~~s~L~i~~~~~~~~~~y~  424 (551)
T 1ntl_A          345 FIFPPKPKDVLTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTQPREEQFNSTFRSVSELPIMHQDWLNGKEFK  424 (551)
T ss_pred             EEcCCCcccceeeccCcceEEEEEecccCCCceEEEEEECCccccccccCCceECCCCeEEEEEeeEcCHHHccCCceEE
Confidence            444444444 667889999999987533    589999999866432211111122233344557888888888899999


Q ss_pred             EEEEcCCCc--eEEEEEEEEeccccCCCCCccccCCCeeeecCCCeEEEEEEEeeCCC--CeEEEEECCEecccCCcceE
Q psy7036          86 VKAKNKMGE--VAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQADPA--PTVIWSHSGVQVKEDKRHKF  161 (254)
Q Consensus        86 C~~~~~~~~--~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~--~~~~W~~~~~~~~~~~~~~~  161 (254)
                      |.+.+....  ....+.+.+..    ..+|.+...........|+.++|.|.+.++.+  ..+.|+|+|+.+........
T Consensus       425 C~v~~~~~~~~~~~~~~~~~~~----~~~P~V~~~~~~~~~~~~~~~~L~C~v~gfyP~~i~v~W~k~g~~~~~~~~~~~  500 (551)
T 1ntl_A          425 CRVNSAAFPAPIEKTISKTKGR----PKAPQLYTIPPPKEQMAKDKVSLTCMITDFFPEDITVEWQWNGQPAENYKNTQP  500 (551)
T ss_pred             EEEecCCCCCCeEEEEecCCCC----CcCCceEEeCCChhhccCCceEEEEEEEEeECCCCEEEEEECCEEccCceeccc
Confidence            999987653  22233333211    13344322222222346889999999998644  47999999998753222222


Q ss_pred             EEcCCCC-ceeeEEEEccCCCCCceeEEEEEEcCCCc
Q psy7036         162 SIDKDGH-SYFASLEIIDVTIEDAGKYKVTAKNELGE  197 (254)
Q Consensus       162 ~~~~~~~-~~~~~l~i~~~~~~d~G~y~C~~~~~~~~  197 (254)
                      ....++. ...+.|.|..-..++.+.|+|.|.+....
T Consensus       501 ~~~~dgty~~~s~l~v~~~~~~~~~~ytC~V~h~~l~  537 (551)
T 1ntl_A          501 IMNTNGSYFVYSKLNVQKSNWEAGNTFTCSVLHEGLH  537 (551)
T ss_pred             eeCCCCCEEEEEEEEEcHHHcCCCCeEEEEEEECCCC
Confidence            2333332 33456777765556678999999987654

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens}

Probab=99.60  E-value=2e-15  Score=96.57  Aligned_cols=99  Identities=23%  Similarity=0.493  Sum_probs=71.4

Q ss_pred             CCCCCeeEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCc---ceEEEeecCCcceEEEEEEeccCCCCC
Q psy7036           5 EDFAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTR---TVMKTTPIGTNKYLVALELDDVIETDA   81 (254)
Q Consensus         5 ~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~i~~~~~~d~   81 (254)
                      +..+|.|...|....+.+|++++|.|.+.|.|.+.+.|+|++..+.....   .......++ ......+.+.+++..|+
T Consensus         6 ~~~pP~i~~~p~~~~v~~G~~v~L~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~v~~~D~   84 (117)
T 2v9t_A            6 EDFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSG-SLFFLRIVHGRKSRPDE   84 (117)
T ss_dssp             CCEEEEEEECCCCEEECTTCCEEECCEEEEESCCEEEEEETTEECCCTTTCSSCSEEECTTS-CEEESSCCCBTTBCSSC
T ss_pred             ccCCCeeEcCCCCEEEcCCCcEEEEEECCccCCCeEEEEECCEeccccCCCCcceeEEecCC-cEEEEEEEeCCCCcCcC
Confidence            45689999999999999999999999999999999999999998865421   111111111 11111223336689999


Q ss_pred             eEEEEEEEcCCCceE-EEEEEEEe
Q psy7036          82 GLYKVKAKNKMGEVA-ASINLNFS  104 (254)
Q Consensus        82 G~Y~C~~~~~~~~~~-~~~~l~v~  104 (254)
                      |.|+|.+.|..|... ..+.|.+.
T Consensus        85 G~Y~C~a~N~~G~~~s~~~~l~~~  108 (117)
T 2v9t_A           85 GVYVCVARNYLGEAVSHDASLEVA  108 (117)
T ss_dssp             EEEEEEEEETTEEEECCCEEEEEC
T ss_pred             EEEEEEEEeCccceEeeeEEEEhh
Confidence            999999999998754 35556654

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A

Probab=99.60  E-value=2.2e-15  Score=94.52  Aligned_cols=93  Identities=30%  Similarity=0.544  Sum_probs=75.5

Q ss_pred             CCCccccCCCeeeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEE
Q psy7036         111 LAPTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVT  190 (254)
Q Consensus       111 ~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~  190 (254)
                      .+|.+...+....+..|+.+.|.|.+.+.|.+.+.|++++..+.......+.....    ...|.|.+++.+|+|.|+|.
T Consensus        13 ~~~~i~~~p~~~~v~~G~~v~L~C~~~g~p~p~v~W~k~g~~l~~~~~~~~~~~~~----~~~L~I~~v~~~D~G~Y~C~   88 (106)
T 1nct_A           13 LAARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKY----KSTFEISSVQASDEGNYSVV   88 (106)
T ss_dssp             CCCEEEECCCCEEESSSSCEECCEEEECSSCCBCCBCSSSSCCTTCSSEEEEECSS----EEEEEECCCCSSCCSEEEEC
T ss_pred             CCCEEEECCCCEEEeCCCcEEEEEEEEEcCCCEEEEEECCEECCCCCCEEEEECCC----EEEEEECcCCchhCEEEEEE
Confidence            45556666777889999999999999999999999999998876555444433211    23899999999999999999


Q ss_pred             EEcCCCcceEEEEEEEe
Q psy7036         191 AKNELGESNATISLNFD  207 (254)
Q Consensus       191 ~~~~~~~~~~~~~~~v~  207 (254)
                      +.|..|....++.|.|.
T Consensus        89 a~N~~G~~~~~~~l~V~  105 (106)
T 1nct_A           89 VENSEGKQEAEFTLTIQ  105 (106)
T ss_dssp             CBCSSCBCCEEEEEEEC
T ss_pred             EEeCCCeEEEEEEEEEE
Confidence            99999998888888774

>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1

Probab=99.60  E-value=1.2e-14  Score=105.36  Aligned_cols=133  Identities=16%  Similarity=0.273  Sum_probs=85.6

Q ss_pred             eeeecCCCeEEEEEEEeeCC--CCeEEEEECC--Eec---------------ccCCcceEEEcCCCCceeeEEEEccCCC
Q psy7036         121 IRQEDDGKRLLFECRIQADP--APTVIWSHSG--VQV---------------KEDKRHKFSIDKDGHSYFASLEIIDVTI  181 (254)
Q Consensus       121 ~~~~~~g~~~~l~C~~~~~~--~~~~~W~~~~--~~~---------------~~~~~~~~~~~~~~~~~~~~l~i~~~~~  181 (254)
                      ...+.+|+.++|.|.+.+.|  .+.+.|+|+.  ...               ......++....+......+|.|.+++.
T Consensus        11 ~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~   90 (247)
T 2ghw_B           11 GGVVQPGKSLRLSCAASGFAFSSYAMHWVRQAPGKGLEWVAVISYDGSNKYYADSVKGRFTISRDNSKNTLYLQMNSLRA   90 (247)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CEEEecCCcEEEEEEeccccCCCceEEEEEeCCCCceEEEEEEecCCCceeeCccccCcEEEEEeCCCCEEEEEECcCCH
Confidence            45778999999999999887  5789999842  110               0001112222211111124799999999


Q ss_pred             CCceeEEEEEEcCCCc--ceEEEEEEEecCCCCCC-----CCCCCCeeecCCccccccCCCCcEEEEEEEeccCCCceeC
Q psy7036         182 EDAGKYKVTAKNELGE--SNATISLNFDSDDAPVP-----GEGTKPVFTERPVTKQSDDDLNDIVIECRLVGEPEPTISW  254 (254)
Q Consensus       182 ~d~G~y~C~~~~~~~~--~~~~~~~~v~~~~~~~~-----~~~~~p~~~~~~~~~~~~~g~~~~~l~C~~~~~p~p~~~W  254 (254)
                      +|+|.|+|.+.|..+.  ......|.|.......+     ....++.+...+....+.+|+ .+.|.|.+.+.|.|.++|
T Consensus        91 ~D~G~Y~C~~~n~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~-~v~L~C~~~~~~~~~v~W  169 (247)
T 2ghw_B           91 EDTAVYYCARDRSYYLDYWGQGTLVTVSSGGGGSGGGGSGGGGSETTLTQSPATLSLSPGE-RATLSCRASQSVRSNLAW  169 (247)
T ss_dssp             GGCEEEEEEEEETTEEEEECCCEEEEECSCC------------CCCCEEEECSEEEECTTS-CEEEEEEESSCCTTCEEE
T ss_pred             HHCEEEEEeeeccCCccccCCceEEEEecccccccccccCCCCcceEEEccCCEEEecCCC-cEEEEEEeCCCccceEEE
Confidence            9999999999997322  22334566654211000     001244555566666788999 999999999999889998

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*

Probab=99.59  E-value=1.6e-14  Score=101.88  Aligned_cols=117  Identities=17%  Similarity=0.256  Sum_probs=84.1

Q ss_pred             eeecCCCeEEEEEEEeeCCCCeEEEEECCEecccC-----------------CcceEEEcCCCCceeeEEEEccCCCCCc
Q psy7036         122 RQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKED-----------------KRHKFSIDKDGHSYFASLEIIDVTIEDA  184 (254)
Q Consensus       122 ~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~l~i~~~~~~d~  184 (254)
                      ..+.+|+.+.|.|...+.+.+.+.|++++......                 ...+.....++     .|.|.+++.+|+
T Consensus         9 ~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~-----~L~i~~v~~~D~   83 (208)
T 3r4d_A            9 PQVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNG-----SLLFQMITMKDM   83 (208)
T ss_dssp             SEEETTCCEEEEEECCCSSCSEEEEEESSCCCGGGEEEEEEGGGTEEEECTTCCSSEEECTTS-----CEEECSCCGGGC
T ss_pred             ceeecCCcEEEEEeCCCCCceEEEeccCCCCCccceEEEEecCCCccccCccccceeEEecCC-----eEEEccccccCC
Confidence            45678999999999878888899999875422111                 01122222222     699999999999


Q ss_pred             eeEEEEEEcCC-CcceEEEEEEEecCCCCCCCCCCCCeeecCCccccccCCCCcEEEEEEEeccCCCceeC
Q psy7036         185 GKYKVTAKNEL-GESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLVGEPEPTISW  254 (254)
Q Consensus       185 G~y~C~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~l~C~~~~~p~p~~~W  254 (254)
                      |.|+|.+.+.. +.....+.|.|...       ...|.+...+..  +.+|+ .+.|.|.+.+.| |.+.|
T Consensus        84 G~Y~C~~~~~~~~~~~~~~~l~V~~~-------~~~p~i~~~~~~--~~~g~-~v~l~C~~~~~p-p~i~W  143 (208)
T 3r4d_A           84 GVYTLDMTDENYRRTQATVRFHVHQP-------VTQPFLQVTNTT--VKELD-SVTLTCLSNDIG-ANIQW  143 (208)
T ss_dssp             EEEEEEEECSSCEEEEEEEEEEEECC-------CCCCEEEESCSS--CCTTC-CEEEEEECSCTT-CEEEE
T ss_pred             eEEEEEEEcccCceeEEEEEEEeccC-------CCCCEEecCCce--EeeCC-CEEEEEECCCCC-CceEE
Confidence            99999999985 44566677777642       224566655444  77888 999999999876 78888

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus}

Probab=99.59  E-value=1.3e-14  Score=89.13  Aligned_cols=87  Identities=23%  Similarity=0.347  Sum_probs=70.3

Q ss_pred             CCCccccCCCeeeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEE
Q psy7036         111 LAPTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVT  190 (254)
Q Consensus       111 ~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~  190 (254)
                      .+|.+...+....+..|+.+.|.|.+.+.| +.+.|+|++..+....+  +... ++     .|.|.+++.+|+|.|+|.
T Consensus         8 ~pp~~~~~~~~~~v~~G~~v~l~C~~~g~p-p~i~W~k~g~~~~~~~~--~~~~-~~-----~L~i~~~~~~D~G~Y~C~   78 (95)
T 2ckn_A            8 QPWGVPVEVESLLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLVESNR--TRIT-GE-----EVEVRDSIPADSGLYACV   78 (95)
T ss_dssp             CSCCBTTBBCCEEECTTSCEEEECCEESSC-CEEEEEBTTBCCCCCSS--EEEC-SS-----EEEESSCCGGGSEEEEEE
T ss_pred             CCCEEEcCcceEEEcCCCeEEEEEECCCCC-CceEEEECCEecCCCCC--EEEe-CC-----EEEECCCChHHCEEEEEE
Confidence            455666666677889999999999999987 79999999988765443  2222 22     799999999999999999


Q ss_pred             EEcCCCcceEEEEEEE
Q psy7036         191 AKNELGESNATISLNF  206 (254)
Q Consensus       191 ~~~~~~~~~~~~~~~v  206 (254)
                      |.|..|.....+.|.|
T Consensus        79 a~n~~g~~~~~~~l~V   94 (95)
T 2ckn_A           79 TSSPSGSDTTYFSVNV   94 (95)
T ss_dssp             EEETTEEEEEEEEEEE
T ss_pred             eccCCCcEEEEEEEEE
Confidence            9999998877777765

>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ...

Probab=99.59  E-value=9.1e-15  Score=103.65  Aligned_cols=126  Identities=18%  Similarity=0.281  Sum_probs=84.1

Q ss_pred             CCeeeecCCCeEEEEEEEeeCCCCeEEEEECCE--ec----------ccCCcceEEEcCCCCceeeEEEEccCCCCCcee
Q psy7036         119 PSIRQEDDGKRLLFECRIQADPAPTVIWSHSGV--QV----------KEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGK  186 (254)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~--~~----------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~  186 (254)
                      +..+.+..|+.+.|.|.+.+.|.+.+.|+|+..  .+          ......++.....+  ....|.|.+++.+|+|.
T Consensus         8 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~--~~~~L~I~~v~~~D~G~   85 (213)
T 3d9a_L            8 PATLSVTPGNSVSLSCRASQSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGSG--TDFTLSINSVETEDFGM   85 (213)
T ss_dssp             CSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEET--TEEEEEESSCCGGGCEE
T ss_pred             CccEEEeCCCcEEEEEECCCCCCCCEEEEEeCCCCCcEEEEEEcccccccccccEEEEcCC--CEEEEEECCCChhhCEE
Confidence            456678899999999999998888999998532  11          00101122221111  12379999999999999


Q ss_pred             EEEEEEcCCCcc-eEEEEEEEecCCCCCCCCCCCCeeecCCccccccCCCCcEEEEEEEec-cCCC-ceeC
Q psy7036         187 YKVTAKNELGES-NATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLVG-EPEP-TISW  254 (254)
Q Consensus       187 y~C~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~l~C~~~~-~p~p-~~~W  254 (254)
                      |+|.+.|..+.. .....+.|...       ..+|.+...+....+..|+ .+.|.|.+.| .|.+ .++|
T Consensus        86 Y~C~~~~~~~~~~~~~~~l~V~~~-------~~~p~v~~~~~~~~~~~g~-~~~l~C~~~g~~p~~~~v~W  148 (213)
T 3d9a_L           86 YFCQQSNSWPYTFGGGTKLEIKRA-------DAAPTVSIFPPSSEQLTSG-GASVVCFLNNFYPKDINVKW  148 (213)
T ss_dssp             EEEEECSSSSCEECCCEEEEECCC-------CBCCEEEEECCCHHHHHTT-EEEEEEEEEEEBSSCCEEEE
T ss_pred             EEEeeecCCcceeCCCEEEEEecC-------CCCceeEeECCChhhcCCC-cEEEEEEEeeecCCceEEEE
Confidence            999999987643 22345556431       1255565544333455788 9999999988 5665 7888

>1pz5_B Heavy chain of FAB (SYA/J6); antibody-antigen structure, peptide-carbohydrate mimicry, VA design, immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1m7d_B* 1m71_B* 1m7i_B* 1r24_B 1uz6_F 1uz8_B* 1clz_H*

Probab=99.59  E-value=2.1e-14  Score=102.36  Aligned_cols=128  Identities=20%  Similarity=0.320  Sum_probs=83.0

Q ss_pred             CeeeecCCCeEEEEEEEeeCC--CCeEEEEECC--Ee---c-ccC----C---------cceEEEcCCCCceeeEEEEcc
Q psy7036         120 SIRQEDDGKRLLFECRIQADP--APTVIWSHSG--VQ---V-KED----K---------RHKFSIDKDGHSYFASLEIID  178 (254)
Q Consensus       120 ~~~~~~~g~~~~l~C~~~~~~--~~~~~W~~~~--~~---~-~~~----~---------~~~~~~~~~~~~~~~~l~i~~  178 (254)
                      ....+..|+.+.|.|.+.+.+  .+.+.|+|++  ..   + ...    .         ..++....+.......|.|.+
T Consensus         8 ~~~~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~   87 (220)
T 1pz5_B            8 GGGLVQPGGSMKLSCVASGFTFSNYWMEWVRQSPEKGLEWVAEIRLKSNNYATHYAESVKGRFTISRDDSKSSVYLQMNN   87 (220)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSEEEEEEEETTTEEEEEEEECCGGGTTCEEECGGGTTTEEEEEEGGGTEEEEEECS
T ss_pred             CCEEEcCCCeEEEEEEEcCCccCCccEEEEEeCCCCCcEEEEEEEcCCCccccccCcccCCcEEEEEeCCCCeEEEEEcc
Confidence            345678899999999998766  6789999853  11   1 000    0         112222111111124799999


Q ss_pred             CCCCCceeEEEEEEcCCCcc---eEEEEEEEecCCCCCCCCCCCCeeecCCccccccCCCCcEEEEEEEecc-CCC-cee
Q psy7036         179 VTIEDAGKYKVTAKNELGES---NATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLVGE-PEP-TIS  253 (254)
Q Consensus       179 ~~~~d~G~y~C~~~~~~~~~---~~~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~l~C~~~~~-p~p-~~~  253 (254)
                      ++.+|+|.|.|.+.+..+..   .....+.|...      ...+|.+...+....+.+|+ .+.|.|.+.|. |.| .++
T Consensus        88 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~------~~~~P~i~~~~~~~~~~~g~-~v~L~C~~~g~~P~p~~v~  160 (220)
T 1pz5_B           88 LRAEDTGIYYCTRGGAVGAMDYWGQGTSVTVSSA------TTTAPSVYPLVPGCSDTSGS-SVTLGCLVKGYFPEPVTVK  160 (220)
T ss_dssp             CCGGGCEEEEEEEECTTSSEEEECCCEEEEECSS------CCBCCEEEEECCCSCCSCSS-SEEEEEEEEEEBSSCCEEE
T ss_pred             CCHHHCEEEEEEEecCCcccceECCCEEEEEccC------CCCCCeEEEcccccccCCCC-cEEEEEEEEEEeCCCeEEE
Confidence            99999999999999875421   13345666531      11245555433333467788 99999999987 888 899


Q ss_pred             C
Q psy7036         254 W  254 (254)
Q Consensus       254 W  254 (254)
                      |
T Consensus       161 W  161 (220)
T 1pz5_B          161 W  161 (220)
T ss_dssp             E
T ss_pred             E
Confidence            8

>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.59  E-value=5.2e-15  Score=102.88  Aligned_cols=125  Identities=14%  Similarity=0.127  Sum_probs=83.9

Q ss_pred             CccccCCCeeeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEE
Q psy7036         113 PTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAK  192 (254)
Q Consensus       113 ~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~  192 (254)
                      |.+...+.. .+.+|+.++|.|.+.+ +.+.+.|+|++..+.......     ........|.|.+++.+|+|.|+|.+.
T Consensus         5 P~i~~~p~~-~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~~-----~~~~~~~~L~I~~v~~~D~G~Y~C~~~   77 (188)
T 1oll_A            5 PFIWAEPHF-MVPKEKQVTICCQGNY-GAVEYQLHFEGSLFAVDRPKP-----PERINKVKFYIPDMNSRMAGQYSCIYR   77 (188)
T ss_dssp             CEEEEESCS-EEETTCCEEEEEECCT-TCCEEEEEETTEEEEEECCSS-----CTTCCEEEEEESSCCGGGCEEEEEEEE
T ss_pred             CEEEeecCC-cCCCCCCEEEEEecCC-CCCEEEEEECCCccccccccc-----CCCcceeEEEeCcCCcccCeEEEEEec
Confidence            344433443 6778999999999864 356899999998764211100     001112379999999999999999999


Q ss_pred             cCCCc--ceEEEEEEEecCCCCCCCCCCCCeeecCCccccccCCCCcEEEEEEEeccCCCceeC
Q psy7036         193 NELGE--SNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLVGEPEPTISW  254 (254)
Q Consensus       193 ~~~~~--~~~~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~l~C~~~~~p~p~~~W  254 (254)
                      |..+.  .+..+.|.|...       ..+|.+...|. ..+.+|+ .++|.|.+.+. .+.+.|
T Consensus        78 ~~~~~~~~s~~~~l~V~~~-------~~~p~i~~~p~-~~v~~G~-~v~L~C~~~~~-~~~~~w  131 (188)
T 1oll_A           78 VGELWSEPSNLLDLVVTEM-------YDTPTLSVHPG-PEVISGE-KVTFYCRLDTA-TSMFLL  131 (188)
T ss_dssp             ETTEECCCCCCEEEEEESC-------SCCCEEEEESC-SEEETTC-EEEEEEECSSS-CSEEEE
T ss_pred             CCCCCCCCCCceEEEeccc-------CCCCeEEECCC-CccccCC-EEEEEEEcCCC-CCEEEE
Confidence            86543  244566666531       12566665553 4578899 99999998664 457777

>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A

Probab=99.59  E-value=4.7e-15  Score=92.59  Aligned_cols=89  Identities=19%  Similarity=0.356  Sum_probs=70.9

Q ss_pred             CCCCeeEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEE
Q psy7036           6 DFAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYK   85 (254)
Q Consensus         6 ~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~   85 (254)
                      ..+|.|...+....+.+|++++|.|.+.+.|.+ +.|+|++..+....++.+..  .+   ....|.|.+++..|+|.|+
T Consensus         6 ~~pp~~~~~~~~~~v~~G~~v~l~C~~~~~p~~-v~W~k~~~~l~~~~~~~~~~--~~---~~~~L~I~~v~~~D~G~Y~   79 (103)
T 2e7b_A            6 SGPVRFQEALKDLEVLEGGAATLRCVLSSVAAP-VKWCYGNNVLRPGDKYSLRQ--EG---AMLELVVRNLRPQDSGRYS   79 (103)
T ss_dssp             CCCCCCTBCCCCEEEESSSCEEEEEECSSCCCS-CEEEESSSBCCCSSSEEEEE--CS---SEEEEEECSCCTTTCCCEE
T ss_pred             CCCCEEEecCccEEEECCCcEEEEEEEeCCCCC-eEEEECCEECCCCCcEEEEE--cC---CEEEEEEccCCcccCEEEE
Confidence            457888888999999999999999999988888 99999999887665554432  22   2347999999999999999


Q ss_pred             EEEEcCCCceEEEEEEEEe
Q psy7036          86 VKAKNKMGEVAASINLNFS  104 (254)
Q Consensus        86 C~~~~~~~~~~~~~~l~v~  104 (254)
                      |.    .+.....+.|.|.
T Consensus        80 C~----~g~~~~~~~l~V~   94 (103)
T 2e7b_A           80 CS----FGDQTTSATLTVT   94 (103)
T ss_dssp             EE----CSSCBCCBCEEEE
T ss_pred             EE----ECCcEEEEEEEEE
Confidence            98    3445556667775

>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.59  E-value=2.6e-14  Score=89.58  Aligned_cols=90  Identities=19%  Similarity=0.173  Sum_probs=70.8

Q ss_pred             CCCCeeEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCC----------cceEEEeecCCcceEEEEEEec
Q psy7036           6 DFAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDT----------RTVMKTTPIGTNKYLVALELDD   75 (254)
Q Consensus         6 ~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~l~i~~   75 (254)
                      ..+|.|...+++..+.+|+++.|.|.+.+  .+.++|+|||..+..+.          ++.+  ...+   ..+.|.|.+
T Consensus         6 ~p~~~~~~~l~d~~v~eG~~a~f~C~vs~--~p~v~W~knG~~l~~~~~~~~~~~~~~r~~i--~~~g---~~~~L~I~~   78 (112)
T 2e6q_A            6 SGTARLVAGLEDVQVYDGEDAVFSLDLST--IIQGTWFLNGEELKSNEPEGQVEPGALRYRI--EQKG---LQHRLILHA   78 (112)
T ss_dssp             CSCCCEEECCCCEEEETTCEEEEEEEESS--CCCCEEEESSCBCCSSCCCTTSCTTSCEEEE--CCBT---TEEEEEEES
T ss_pred             cCCcEEecCCCCeEEcCCCcEEEEEEECC--CCeEEEEECCEECccCcccccccccccEEEE--EeCC---cEEEEEECC
Confidence            34678999999999999999999999986  77899999999998765          3333  2222   244899999


Q ss_pred             cCCCCCeEEEEEEEcCCCceEEEEEEEEec
Q psy7036          76 VIETDAGLYKVKAKNKMGEVAASINLNFSR  105 (254)
Q Consensus        76 ~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~  105 (254)
                      ++.+|+|.|+|..-+   ....++.|.|..
T Consensus        79 v~~~D~G~Y~~~~~~---~~~ssA~L~V~~  105 (112)
T 2e6q_A           79 VKHQDSGALVGFSCP---GVQDSAALTIQE  105 (112)
T ss_dssp             CCSTTCSEEEEEEET---TEEEEEEEEEEC
T ss_pred             CCHHHCccEEEEEEC---CeeEEEEEEEeC
Confidence            999999999875443   345678888874

>3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; anti-CD3epsilon, T-cell receptor, signalling, IMMU; 2.50A {Cricetulus migratorius} PDB: 3r08_L 3ld8_B 3ldb_B*

Probab=99.59  E-value=2.6e-14  Score=101.29  Aligned_cols=126  Identities=17%  Similarity=0.237  Sum_probs=84.7

Q ss_pred             CCeeeecCCCeEEEEEEEeeCCCCeEEEEECCE--e---ccc-------CCcceEEEcCCCCceeeEEEEccCCCCCcee
Q psy7036         119 PSIRQEDDGKRLLFECRIQADPAPTVIWSHSGV--Q---VKE-------DKRHKFSIDKDGHSYFASLEIIDVTIEDAGK  186 (254)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~--~---~~~-------~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~  186 (254)
                      +..+.+.+|+.+.|.|.+.+.+.+.+.|+|...  .   +..       ....++.....+  ....|.|.+++.+|+|.
T Consensus         8 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~--~~~~L~I~~v~~~D~G~   85 (213)
T 3r06_A            8 PSSLPASLGDRVTINCQASQDISNYLNWYQQKPGKAPKLLIYYTNKLADGVPSRFSGSGSG--RDSSFTISSLESEDIGS   85 (213)
T ss_dssp             CSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEET--TEEEEEESSCCGGGCSE
T ss_pred             CCEEEecCCCcEEEEEEeCCCcCceEEEEEECCCCCcEEEEEEcCcCCCCCCCcEEEeccC--CEEEEEECCCCcccCEE
Confidence            456778899999999999998889999998421  0   000       001111111111  12379999999999999


Q ss_pred             EEEEEEcCCCc-ceEEEEEEEecCCCCCCCCCCCCeeecCCccccccCCCCcEEEEEEEeccCCC--ceeC
Q psy7036         187 YKVTAKNELGE-SNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLVGEPEP--TISW  254 (254)
Q Consensus       187 y~C~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~l~C~~~~~p~p--~~~W  254 (254)
                      |+|.+.|..+. ......+.|..       ...+|.+...+....+..|+ .+.|.|.+.|.|++  .++|
T Consensus        86 Y~C~~~~~~~~~~~~~~~l~V~~-------~~~~p~v~~~~~~~~~~~~~-~v~l~C~~~g~~p~~~~v~W  148 (213)
T 3r06_A           86 YYCQQYYNYPWTFGPGTKLEIKR-------ADAKPTVSIFPPSSEQLGTG-SATLVCFVNNFYPKDINVKW  148 (213)
T ss_dssp             EEEEECSSSSCEECCCEEEEECC-------CCBCCEEEEECCCHHHHTTT-EEEEEEEEEEEBSSCEEEEE
T ss_pred             EEEecccCCceEEcCCceEEEec-------cCCCceeeeeCCCceecCCC-CcEEEEEEeeecCCceEEEE
Confidence            99999987543 23334555532       12366676666555666788 89999999987643  7888

>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A

Probab=99.59  E-value=1.2e-14  Score=95.70  Aligned_cols=90  Identities=19%  Similarity=0.348  Sum_probs=67.5

Q ss_pred             CCCCeeEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCC--------cceEEEeecCCcceEEEEEEeccC
Q psy7036           6 DFAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDT--------RTVMKTTPIGTNKYLVALELDDVI   77 (254)
Q Consensus         6 ~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~l~i~~~~   77 (254)
                      ..+|.|...|....+.+|++++|.|.+.|.|.+.+.|++++..+....        ..++.............|.|.+++
T Consensus        19 ~~pP~~~~~p~~~~v~~G~~v~L~C~~~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~   98 (137)
T 3qr2_A           19 SHMAGFVQAPLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARLDRVHIHATYHQHAASTISIDTLV   98 (137)
T ss_dssp             --CCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEEEESSTTCCCEECCTTHHHHTEEEEEEESSSEEEEEEECSCC
T ss_pred             CCCCeEEcCCCCEEEeCCCCEEEEEEEeeecCCeEEEEECCCCccccceeecccCcccceEEecccccccceEEEECCCC
Confidence            468999999999999999999999999999999999999776442210        111111111112234589999999


Q ss_pred             CCCCeEEEEEEEcCCCce
Q psy7036          78 ETDAGLYKVKAKNKMGEV   95 (254)
Q Consensus        78 ~~d~G~Y~C~~~~~~~~~   95 (254)
                      ..|+|.|+|.+.|..|..
T Consensus        99 ~~D~G~Y~C~a~N~~G~~  116 (137)
T 3qr2_A           99 EEDTGTYECRASNDPDRN  116 (137)
T ss_dssp             GGGCEEEEEEEECCTTSS
T ss_pred             cccCEEEEEEEEecCCcc
Confidence            999999999999998875

>4hwu_A Fibroblast growth factor receptor 2; FGFR2, KGFR, CD332, IG-C2 type 1 domain, IG superfamily, IMM system, structural genomics, PSI-biology; 2.90A {Mus musculus}

Probab=99.59  E-value=7e-15  Score=90.35  Aligned_cols=82  Identities=22%  Similarity=0.351  Sum_probs=67.4

Q ss_pred             eCCCceeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcCC
Q psy7036          13 QKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKM   92 (254)
Q Consensus        13 ~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~   92 (254)
                      ..|....+.+|+++.|.|.+.+  .+.+.|+|+|..+....+....   .+      .|.|.+++..|+|.|+|.+.|..
T Consensus         6 ~~p~~~~v~~G~~~~l~C~~~~--~p~v~W~k~g~~~~~~~~~~~~---~~------~L~i~~~~~~D~G~Y~C~a~n~~   74 (95)
T 4hwu_A            6 SQPEAYVVAPGESLELQCMLKD--AAVISWTKDGVHLGPNNRTVLI---GE------YLQIKGATPRDSGLYACTAARTV   74 (95)
T ss_dssp             --CEEEEECTTSCEEEECCCCT--TCEEEEEETTEEECCCSSEEEE---TT------EEEECSCCGGGCEEEEEEEECSS
T ss_pred             cCCCcEEECCCCEEEEEEEeCC--CCEEEEEECCEECCCCceEEEe---CC------EEEECcCCcccCEEEEEEEccCC
Confidence            4667778999999999999985  5789999999998766554432   11      79999999999999999999999


Q ss_pred             CceEEEEEEEEec
Q psy7036          93 GEVAASINLNFSR  105 (254)
Q Consensus        93 ~~~~~~~~l~v~~  105 (254)
                      |.....+.|.|.+
T Consensus        75 g~~~~~~~l~V~~   87 (95)
T 4hwu_A           75 DSETWIFMVNVTD   87 (95)
T ss_dssp             CEEEEEEEEEECC
T ss_pred             CcEEEEEEEEEeC
Confidence            9888888888863

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.59  E-value=1.7e-15  Score=93.81  Aligned_cols=83  Identities=27%  Similarity=0.452  Sum_probs=67.6

Q ss_pred             eCCCceeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcCC
Q psy7036          13 QKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKM   92 (254)
Q Consensus        13 ~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~   92 (254)
                      ..|....+.+|+.++|.|.+.+.| +.+.|+|++..+....+..+.    +.     .|.|.+++..|+|.|+|.+.|..
T Consensus         8 ~~p~~~~v~~G~~v~L~C~~~g~p-p~i~W~k~g~~~~~~~~~~~~----~~-----~L~i~~v~~~D~G~Y~C~a~n~~   77 (99)
T 2cr3_A            8 VEVESFLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLAESNRTRIT----GE-----EVEVQDSVPADSGLYACVTSSPS   77 (99)
T ss_dssp             CCEEECCBCTTSCEEEECCCCSSC-CEEEEEESSSBCCCCSSEEEC----SS-----EEEETTCCTTTCEEEEEEEEETT
T ss_pred             CCCcCeEEeCCCcEEEEEEecCCC-CeEEEEECCEECCCCCcEEEE----CC-----EEEEccCCHHHCEEEEEEEEeCC
Confidence            356667789999999999998876 699999999887655443332    11     79999999999999999999999


Q ss_pred             CceEEEEEEEEec
Q psy7036          93 GEVAASINLNFSR  105 (254)
Q Consensus        93 ~~~~~~~~l~v~~  105 (254)
                      |.....+.|.|..
T Consensus        78 g~~~~~~~l~V~~   90 (99)
T 2cr3_A           78 GSDTTYFSVNVSD   90 (99)
T ss_dssp             EEEEEEEEECBCS
T ss_pred             ceEEEEEEEEEec
Confidence            8887788777753

>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 3tnm_L 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A ...

Probab=99.58  E-value=1.6e-14  Score=102.30  Aligned_cols=123  Identities=18%  Similarity=0.204  Sum_probs=83.3

Q ss_pred             eeeecCCCeEEEEEEEeeCCCCeEEEEEC--CEecc---c-C------CcceEEEcCCCCceeeEEEEccCCCCCceeEE
Q psy7036         121 IRQEDDGKRLLFECRIQADPAPTVIWSHS--GVQVK---E-D------KRHKFSIDKDGHSYFASLEIIDVTIEDAGKYK  188 (254)
Q Consensus       121 ~~~~~~g~~~~l~C~~~~~~~~~~~W~~~--~~~~~---~-~------~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~  188 (254)
                      .+.+.+|+.+.|.|.+.  +.+.+.|+|+  +....   . .      ...++......  ....|.|.+++.+|+|.|+
T Consensus         9 ~~~v~~G~~v~L~C~~~--~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~--~~~~L~I~~v~~~D~G~Y~   84 (211)
T 3tv3_L            9 SASGSPGQSITISCTGT--SNNFVSWYQQHAGKAPKLVIYDVNKRPSGVPDRFSGSKSG--NTASLTVSGLQTDDEAVYY   84 (211)
T ss_dssp             EEEECTTCEEEEEEECC--CSSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEET--TEEEEEEESCCGGGCEEEE
T ss_pred             eEEEcCCCCEEEEEEEC--CCCeEEEEEECCCCCCEEEEEEecccCCCCcCcEEEEccC--CEEEEEECCCChhHCEEEE
Confidence            67788999999999987  7889999994  22110   0 0      01111111111  1247999999999999999


Q ss_pred             EEEEcCCC--cceEEEEEEEecCCCCCCCCCCCCeeecCCccccccCCCCcEEEEEEEeccC--CCceeC
Q psy7036         189 VTAKNELG--ESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLVGEP--EPTISW  254 (254)
Q Consensus       189 C~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~l~C~~~~~p--~p~~~W  254 (254)
                      |.+.|..+  .......|.|...      ...+|.+...+....+..|+ .+.|.|.+.|.+  .+.++|
T Consensus        85 C~~~~~~~~~~~~~~~~l~V~~~------~~~~P~v~~~~~~~~~~~g~-~v~l~C~~~g~~p~~~~v~W  147 (211)
T 3tv3_L           85 CGSLVGNWDVIFGGGTKLTVLGQ------PKAAPSVTLFPPSSEELQAN-KATLVCLISDFYPGAVTVAW  147 (211)
T ss_dssp             EEEEETTTEEEECCCEEEEECCS------CCBCCEEEEECCCHHHHHTT-CEEEEEEEEEEBSSCCEEEE
T ss_pred             EEEecCCCceeECCCceEEEeCC------CCcCCeeEecCCchhhhcCC-CeEEEEEeeeecCCCeEEEE
Confidence            99999877  3444556666531      12366676666555555788 999999999863  467888

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4

Probab=99.58  E-value=4.8e-14  Score=90.22  Aligned_cols=81  Identities=28%  Similarity=0.412  Sum_probs=65.3

Q ss_pred             CeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcceEEEEEEEe
Q psy7036         128 KRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFD  207 (254)
Q Consensus       128 ~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~v~  207 (254)
                      ....|.|.+.|.|.+.+.|+|++..+............++......|.|.++..+|+|.|+|.|.|..|....++.+.|.
T Consensus        21 ~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~  100 (118)
T 1wwc_A           21 LEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHFL  100 (118)
T ss_dssp             CEEEEEEEEECSSCCEEEEEETTEECCCSSSEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEEETTEEEEEEEEECCS
T ss_pred             cceEEEEEeeeeCCCeEEEEECCEECCCCCceeEEEeccCccccEEEEECCCChhcCEEEEEEEECCCCeEeeEEEEEEc
Confidence            56788999999999999999999998766554444333332334589999999999999999999999998888887665


Q ss_pred             c
Q psy7036         208 S  208 (254)
Q Consensus       208 ~  208 (254)
                      .
T Consensus       101 ~  101 (118)
T 1wwc_A          101 K  101 (118)
T ss_dssp             C
T ss_pred             c
Confidence            4

>3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A {Mus musculus}

Probab=99.58  E-value=8.3e-15  Score=107.75  Aligned_cols=160  Identities=17%  Similarity=0.240  Sum_probs=81.0

Q ss_pred             cCCCCCeEEEEEEEcCCCceEEEEEEEEeccccCCCCCccccCCCeeeecCCCeEEEEEEEeeCCCCeEEEEECC--Eec
Q psy7036          76 VIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSG--VQV  153 (254)
Q Consensus        76 ~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~--~~~  153 (254)
                      .++.|.+.|.|.+.+..|.......+.|            ...+..+.+.+|+.++|.|.+.+ +.+.+.|+|..  ...
T Consensus         3 ~~~~~~~~y~~~~~~~~g~~~~~~~~~v------------~~~p~~v~v~~G~~v~L~C~~~~-~~~~v~W~k~~~~~~~   69 (270)
T 3qib_D            3 NERADLIAYLKQATKGGGGSGGGGGMKV------------IQTPRYLVKGQGQKAKMRCIPEK-GHPVVFWYQQNKNNEF   69 (270)
T ss_dssp             -------------------------CCC------------EEECSEEEEETTSCEEEEEECCT-TCCEEEEEEECTTCCE
T ss_pred             chhhhHHHHHHHHhccCCccccccceeE------------EeCCCeEEEcCCCCEEEEEEecC-CCceEEEEEECCCCCc
Confidence            3578899999999887765443333333            22345567889999999999754 66789999832  110


Q ss_pred             ----ccCCc---------c-eEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCC----cceEEEEEEEecCCCCCCC
Q psy7036         154 ----KEDKR---------H-KFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELG----ESNATISLNFDSDDAPVPG  215 (254)
Q Consensus       154 ----~~~~~---------~-~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~----~~~~~~~~~v~~~~~~~~~  215 (254)
                          .....         . ++..... .....+|.|.+++.+|+|.|.|.+.+...    .......+.|......   
T Consensus        70 ~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~---  145 (270)
T 3qib_D           70 KFLINFQNQEVLQQIDMTEKRFSAECP-SNSPCSLEIQSSEAGDSALYLCASSLNWSQDTQYFGPGTRLLVLEDLKN---  145 (270)
T ss_dssp             EEEEEEETTEEEEECHHHHHHEEEECC-TTSCEEEEESSCCGGGCEEEEEEEESCTTCCCCEECCCEEEEEESCSTT---
T ss_pred             EEEEEECCCCceecCCccCCcEEEEeC-CCcEEEEEECCCCHhHCeEEEEEEecCCCccceEECCcEEEEEcccccc---
Confidence                00000         0 2222211 11224899999999999999999997432    2223345556532111   


Q ss_pred             CCCCCeeec-CCccccccCCCCcEEEEEEEec-cCCC-ceeC
Q psy7036         216 EGTKPVFTE-RPVTKQSDDDLNDIVIECRLVG-EPEP-TISW  254 (254)
Q Consensus       216 ~~~~p~~~~-~~~~~~~~~g~~~~~l~C~~~~-~p~p-~~~W  254 (254)
                       ..+|.+.. .+....+..|+ .+.|.|.+.| .|.| .++|
T Consensus       146 -~~~P~v~~~~~~~~~~~~g~-~v~L~C~~~g~~P~~~~v~W  185 (270)
T 3qib_D          146 -VFPPEVAVFEPSEAEISHTQ-KATLVCLATGFYPDHVELSW  185 (270)
T ss_dssp             -CBCCEEEEEECCHHHHHHHS-EEEEEEEEEEEBSSCEEEEE
T ss_pred             -ccCCceEEECCCccccccCC-ceEEEEEecceeCCCeEEEE
Confidence             12444433 33443455688 9999999998 5767 6888

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4

Probab=99.58  E-value=5.8e-15  Score=91.29  Aligned_cols=87  Identities=21%  Similarity=0.294  Sum_probs=66.4

Q ss_pred             CCeeE-eCCCceeecCCCeEEEEEEEe-eCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEE
Q psy7036           8 APSFT-QKPQLRQEDEGNRLIFECQLL-CNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYK   85 (254)
Q Consensus         8 ~p~~~-~~~~~~~v~~g~~v~l~C~~~-~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~   85 (254)
                      +|.+. ..+....+.+|++++|.|.+. +.|.+.+.|+|++.......  ..  ...+      .|.|.+++.+|+|.|+
T Consensus         9 ~~~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~k~~~~~~~~~--~~--~~~~------~L~i~~v~~~D~G~Y~   78 (98)
T 1gl4_B            9 PIMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSR--AM--DFNG------ILTIRNVQPSDAGTYV   78 (98)
T ss_dssp             CEEEEECSCCEEEECTTCCEEEEEEEEESSSCCEEEEEEGGGBCCCTT--EE--EETT------EEEECSCCGGGCEEEE
T ss_pred             CcEEEEeCCCCeEEecCCCEEEEEeCCCCCCCcEEEEEeCCCCCCCce--ee--cCCC------EEEEeCCChhhCEEEE
Confidence            34444 455777899999999999998 58899999999754332221  11  1111      7999999999999999


Q ss_pred             EEEEcCCCceEEEEEEEEe
Q psy7036          86 VKAKNKMGEVAASINLNFS  104 (254)
Q Consensus        86 C~~~~~~~~~~~~~~l~v~  104 (254)
                      |.+.|..|.....+.|.|.
T Consensus        79 C~a~n~~g~~~~~~~l~V~   97 (98)
T 1gl4_B           79 CTGSNMFAMDQGTATLHVQ   97 (98)
T ss_dssp             EEEECSSCEEEEEEEEEEC
T ss_pred             EEecCCCCccccEEEEEEe
Confidence            9999999988888887764

>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L*

Probab=99.58  E-value=2.1e-14  Score=101.55  Aligned_cols=126  Identities=17%  Similarity=0.256  Sum_probs=83.4

Q ss_pred             CCeeeecCCCeEEEEEEEeeCCCCeEEEEECC--Eec----------ccCCcceEEEcCCCCceeeEEEEccCCCCCcee
Q psy7036         119 PSIRQEDDGKRLLFECRIQADPAPTVIWSHSG--VQV----------KEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGK  186 (254)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~--~~~----------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~  186 (254)
                      +....+.+|+.+.|.|.+.+.+.+.+.|+|+.  ..+          ......++.....+  ....|.|.+++.+|+|.
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~--~~~~L~I~~v~~~D~G~   84 (210)
T 1lk3_L            7 PPALTVSPGEKLTISCKASESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGSG--TDFTLTIDPVEADDTAI   84 (210)
T ss_dssp             CSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEET--TEEEEEESSCCGGGCEE
T ss_pred             CCcEEEcCCCCEEEEeeCCCccCCCEEEEEECCCCCeEEEEEccccccCCccccEEEEecC--CEEEEEECCCCHHHCeE
Confidence            55677889999999999999888899999852  211          00001122211111  12379999999999999


Q ss_pred             EEEEEEcCCCcc-eEEEEEEEecCCCCCCCCCCCCeeecCCccccccCCCCcEEEEEEEecc-CCC-ceeC
Q psy7036         187 YKVTAKNELGES-NATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLVGE-PEP-TISW  254 (254)
Q Consensus       187 y~C~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~l~C~~~~~-p~p-~~~W  254 (254)
                      |+|.+.|..+.. .....+.|...       ..+|.+...+....+..|+ .+.|.|.+.|. |.+ .++|
T Consensus        85 Y~C~~~~~~~~~~~~~~~l~V~~~-------~~~P~v~~~~~~~~~~~g~-~v~l~C~~~g~~p~~~~v~W  147 (210)
T 1lk3_L           85 YFCQQSWNGPLTFGAGTKLELKRA-------DAAPTVSIFPPSTEQLATG-GASVVCLMNNFYPRDISVKW  147 (210)
T ss_dssp             EEEEECSSSSCEECCCEEEEECCC-------CBCCEEEEECCCHHHHTTT-EEEEEEEEEEEBSSCCEEEE
T ss_pred             EEEEEEcCCCceeCCCEEEEEcCC-------CcCCeEEEECCchhhccCC-cEEEEEEEEeEeCCceEEEE
Confidence            999999876643 22335555431       1245565544333445788 99999999984 554 7888

>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.58  E-value=1.5e-14  Score=90.25  Aligned_cols=90  Identities=19%  Similarity=0.347  Sum_probs=72.1

Q ss_pred             CCCCeeEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEE
Q psy7036           6 DFAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYK   85 (254)
Q Consensus         6 ~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~   85 (254)
                      ..+|.|...+....+.+|++++|.|.+ +.|.+.+.|+|++..+....++.+..  .+   ....|.|.+++..|+|.|+
T Consensus         6 ~~pp~~~~~~~~~~v~~G~~v~l~C~~-~~p~~~v~W~k~~~~l~~~~~~~~~~--~~---~~~~L~I~~v~~~D~G~Y~   79 (103)
T 2dku_A            6 SGANCFTEELTNLQVEEKGTAVFTCKT-EHPAATVTWRKGLLELRASGKHQPSQ--EG---LTLRLTISALEKADSDTYT   79 (103)
T ss_dssp             CCCCCCSSCCCCEEEETTSEEEEEEEC-SSCCSCCEEEESSCBCCSSSSEEEEE--ET---TEEEEEEESCCTTTCSEEE
T ss_pred             CCCCEeEecCCcEEEeCCCcEEEEEEe-CCCCCeEEEEeCCEECCCCCeEEEEe--CC---CEEEEEECCCCcccCEEEE
Confidence            357889989999999999999999995 78888999999999887766655432  11   2337999999999999999


Q ss_pred             EEEEcCCCceEEEEEEEEec
Q psy7036          86 VKAKNKMGEVAASINLNFSR  105 (254)
Q Consensus        86 C~~~~~~~~~~~~~~l~v~~  105 (254)
                      |.    .+.....+.|.|..
T Consensus        80 C~----~g~~~~~~~l~V~~   95 (103)
T 2dku_A           80 CD----IGQAQSRAQLLVQG   95 (103)
T ss_dssp             EE----CSSCBCCEEEEEEC
T ss_pred             EE----eCCceEEEEEEEeC
Confidence            98    45555667788764

>1q9r_B S25-2 FAB (IGG1K) heavy chain; antigen-binding fragment, anti-carbohydrate, anti-LPS, antibody, immunoglobulin, KDO, complex, immune system; HET: KDA KDO; 1.45A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q9l_B 1q9k_B* 1q9q_B* 1q9v_B* 2r1w_B* 2r1x_B* 2r1y_B* 2r2b_B* 2r2e_B* 2r2h_B* 3bpc_B* 3sy0_B* 3t4y_B* 3t65_B* 2r23_B* 1q9t_B* 3t77_B* 3okl_B* 3okk_B* 3okm_B ...

Probab=99.58  E-value=3.6e-14  Score=101.27  Aligned_cols=127  Identities=16%  Similarity=0.277  Sum_probs=81.7

Q ss_pred             eeeecCCCeEEEEEEEeeCC--CCeEEEEECC--Ee---cc----c----------CCcceEEEcCCCCceeeEEEEccC
Q psy7036         121 IRQEDDGKRLLFECRIQADP--APTVIWSHSG--VQ---VK----E----------DKRHKFSIDKDGHSYFASLEIIDV  179 (254)
Q Consensus       121 ~~~~~~g~~~~l~C~~~~~~--~~~~~W~~~~--~~---~~----~----------~~~~~~~~~~~~~~~~~~l~i~~~  179 (254)
                      ...+..|+.+.|.|.+.+.+  .+.+.|+|+.  ..   +.    .          ....++....+.......|.|.++
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v   88 (222)
T 1q9r_B            9 GGLVQSGGSLRLSCATSGFTFTDYYMSWVRQPPGKALEWLGFIRNKANGYTTEYSPSVKGRFTISRDNSQSILYLQMNTL   88 (222)
T ss_dssp             CCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECCGGGTTCEEECTTTBTTEEEEEETTTTEEEEEECSC
T ss_pred             ceeEcCCCEEEEEEEecCccCCCCcEEEEEECCCCCcEEEEEEccCCcccccccCcccCCceEEEEECCCCeEEEEECcC
Confidence            34677899999999998765  6789999853  11   10    0          001122222111111348999999


Q ss_pred             CCCCceeEEEEEEcCCC-----cceEEEEEEEecCCCCCCCCCCCCeeecCCccccccCCCCcEEEEEEEecc-CCC-ce
Q psy7036         180 TIEDAGKYKVTAKNELG-----ESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLVGE-PEP-TI  252 (254)
Q Consensus       180 ~~~d~G~y~C~~~~~~~-----~~~~~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~l~C~~~~~-p~p-~~  252 (254)
                      +.+|+|.|.|.+.+..+     .......+.|....      ..+|.+...+....+.+|+ .+.|.|.+.|. |.| .+
T Consensus        89 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~------~~~P~i~~~~~~~~~~~g~-~v~L~C~~~g~~P~p~~v  161 (222)
T 1q9r_B           89 RAEDSATYYCARDHDGYYERFSYWGQGTLVTVSAAK------TTPPSVYPLAPGSAAQTNS-MVTLGCLVKGYFPEPVTV  161 (222)
T ss_dssp             CGGGCEEEEEEECCCSSCCSCCCBCCCEEEEECSSC------CBCCEEEEECCCSCCCCSS-EEEEEEEEEEEBSSCCEE
T ss_pred             CcccCeEEEEEEeccCCcccceEeCCceEEEeccCC------CCCCeEEEccccccccCCC-cEEEEEEEccEECCCCEE
Confidence            99999999999998754     22233456665311      1245554433333456788 99999999986 888 89


Q ss_pred             eC
Q psy7036         253 SW  254 (254)
Q Consensus       253 ~W  254 (254)
                      +|
T Consensus       162 ~W  163 (222)
T 1q9r_B          162 TW  163 (222)
T ss_dssp             EE
T ss_pred             EE
Confidence            98

>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A

Probab=99.58  E-value=1.7e-14  Score=101.34  Aligned_cols=128  Identities=12%  Similarity=0.142  Sum_probs=85.0

Q ss_pred             CCccccCCCeeeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEE
Q psy7036         112 APTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTA  191 (254)
Q Consensus       112 ~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~  191 (254)
                      +|.+...+. ..+.+|+.++|.|.+. .+.+.+.|+|++..+........ ..  .......|.|.+++.+|+|.|+|.+
T Consensus         8 ~P~i~~~p~-~~v~~G~~v~L~C~~~-~~~~~~~w~k~g~~~~~~~~~~~-~~--~~~~~~~l~I~~v~~~D~G~Y~C~a   82 (201)
T 1nkr_A            8 KPSLLAHPG-PLVKSEETVILQCWSD-VMFEHFLLHREGMFNDTLRLIGE-HH--DGVSKANFSISRMTQDLAGTYRCYG   82 (201)
T ss_dssp             CCEEEEESC-SEEETTCCEEEEEEES-SCCSEEEEEEESSSCEEEEEECE-EE--TTEEEEEEEESSCCGGGCEEEEEEE
T ss_pred             CCeEEEEcC-CccCCCCcEEEEEecc-CCCCEEEEEECCCcCCcceeeee-cC--CCCceEEEEeccCCcccCeEEEEeE
Confidence            344443333 4577899999999986 46779999999875532110000 00  0111237999999999999999999


Q ss_pred             EcCCC-----cceEEEEEEEecCCCCCCCCCCCCeeecCCccccccCCCCcEEEEEEEeccCCCceeC
Q psy7036         192 KNELG-----ESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLVGEPEPTISW  254 (254)
Q Consensus       192 ~~~~~-----~~~~~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~l~C~~~~~p~p~~~W  254 (254)
                      .+...     ..+..+.|.|...       ..+|.+...|. ..+.+|+ .++|.|.+.+ |.+.+.|
T Consensus        83 ~~~~~~~~~~~~s~~~~l~V~~~-------~~~p~i~~~p~-~~v~~G~-~v~L~C~~~~-~~~~~~w  140 (201)
T 1nkr_A           83 SVTHSPYQVSAPSDPLDIVIIGL-------YEKPSLSAQPG-PTVLAGE-NVTLSCSSRS-SYDMYHL  140 (201)
T ss_dssp             EBTTBTTCCCCCCCCEEEEEECS-------SCCCEEEEESC-SEECTTC-EEEEEEEESS-CCSEEEE
T ss_pred             ecCCCCccccCCCCCEEEEeecc-------CCCCceecCCC-CccCCCC-eEEEEEeCCC-CCceEEE
Confidence            87531     2244556666541       12566766555 3678899 9999999986 4567777

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.58  E-value=8.2e-16  Score=117.23  Aligned_cols=144  Identities=14%  Similarity=0.240  Sum_probs=102.1

Q ss_pred             CCeEEEEEEEcCCCceEEEEEEEEeccccCCCCCccccCCCeeeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcc
Q psy7036          80 DAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRH  159 (254)
Q Consensus        80 d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~  159 (254)
                      +.|.|+|.+.+....    +.+      ....+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+......
T Consensus       136 ~~~~~~C~~~~~l~~----l~~------~~c~~P~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~i~W~~~~~~~~~~~~~  205 (347)
T 2ifg_A          136 PEQKLQCHGQGPLAH----MPN------ASCGVPTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMK  205 (347)
T ss_dssp             GGGCCCCSSSSCSSC----CCC------TTCCCCEEEEECCSSCCBTTCCEEEEEEEECSSCCCCCEEESCCCSSEEECC
T ss_pred             cccCCCCCCChHHhc----CCc------ccCCCCceeccCCceEEeCCCcEEEEEEEecCCCCEEEEEcCCceeeccccc
Confidence            457888876542111    111      1113555555556667889999999999999999999999988664322111


Q ss_pred             eEEEcCCCCceeeEEEEccCCCCCce-eEEEEEEcCCCcceEEEEEEEecCCCCCCCCCCCCeeecCCccccccCCCCcE
Q psy7036         160 KFSIDKDGHSYFASLEIIDVTIEDAG-KYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDI  238 (254)
Q Consensus       160 ~~~~~~~~~~~~~~l~i~~~~~~d~G-~y~C~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~  238 (254)
                            ........|.|.+++.+|.| .|+|.|.|..|.....+.+.|..          +|.+    ....+.+|+ .+
T Consensus       206 ------~~~~~~~~L~i~~v~~~D~G~~Y~C~a~n~~g~~~~~~~l~V~~----------~P~i----~~~~~~~g~-~v  264 (347)
T 2ifg_A          206 ------SGGLPSLGLTLANVTSDLNRKNVTCWAENDVGRAEVSVQVNVSF----------PASV----QLHTAVEMH-HW  264 (347)
T ss_dssp             ------CCCSSEEEEEEESCCSTTTTCCEEECCEETTEECCEEECCCCBE----------EEEE----EECCCEESS-SE
T ss_pred             ------ceecccceEEEeeCChHHCCCeEEEEEEcCCCCEEEEEEEEEcC----------CCee----eeccCccCc-eE
Confidence                  11122348999999999999 99999999998887777766653          4443    112345677 99


Q ss_pred             EEEEEEeccCCCceeC
Q psy7036         239 VIECRLVGEPEPTISW  254 (254)
Q Consensus       239 ~l~C~~~~~p~p~~~W  254 (254)
                      .|.|.+.|.|.|.++|
T Consensus       265 ~l~C~~~g~P~p~i~W  280 (347)
T 2ifg_A          265 CIPFSVDGQPAPSLRW  280 (347)
T ss_dssp             EEEEEEEEESCCEEEE
T ss_pred             EEEEEeeecCCCcEEE
Confidence            9999999999999999

>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus musculus} PDB: 2qhr_L 3ffd_B 4dcq_A

Probab=99.58  E-value=2.2e-14  Score=102.00  Aligned_cols=125  Identities=16%  Similarity=0.261  Sum_probs=83.7

Q ss_pred             eeeecCCCeEEEEEEEeeC-CCCeEEEEECC--Ee---c-ccCC----------cceEEEcCCCCceeeEEEEccCCCCC
Q psy7036         121 IRQEDDGKRLLFECRIQAD-PAPTVIWSHSG--VQ---V-KEDK----------RHKFSIDKDGHSYFASLEIIDVTIED  183 (254)
Q Consensus       121 ~~~~~~g~~~~l~C~~~~~-~~~~~~W~~~~--~~---~-~~~~----------~~~~~~~~~~~~~~~~l~i~~~~~~d  183 (254)
                      .+.+.+|+.+.|.|.+.+. +.+.+.|+|..  ..   + ....          ..++.....  .....|.|.+++.+|
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~--~~~~~L~I~~v~~~D   86 (218)
T 3s96_B            9 SASFSLGASAKLTCTLNSQHSTYTIEWYQQQPLKPPKYVMELKKDGSHSTGDGIPDRFSGSSS--GADRYLSISNIQPED   86 (218)
T ss_dssp             EEEEETTSCEEEEEEECGGGTTCCEEEEEECTTSCCEEEEEECTTSCEEECSSCCTTEEEEEE--TTEEEEEESSCCGGG
T ss_pred             cEEECCCCcEEEEEECCCCCCCcEEEEEEECCCCCeEEEEEEcccCccccCCCcccceEEecC--CceEEEEEccCCccc
Confidence            6678899999999999988 88899999832  10   0 0000          011111111  112479999999999


Q ss_pred             ceeEEEEEEcCCC-----cceEEEEEEEecCCCCCCCCCCCCeeecCCccccccCCCCcEEEEEEEec-cCCC-ceeC
Q psy7036         184 AGKYKVTAKNELG-----ESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLVG-EPEP-TISW  254 (254)
Q Consensus       184 ~G~y~C~~~~~~~-----~~~~~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~l~C~~~~-~p~p-~~~W  254 (254)
                      +|.|+|.+.|..+     .......|.|....      ..+|.+...+....+..++ .+.|.|.+.| .|.| .++|
T Consensus        87 ~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~------~~~P~~~~~~~~~~~~~~~-~v~L~C~~~g~~p~~~~v~W  157 (218)
T 3s96_B           87 EAIYICGVGDTIKEQFVYVFGGGTKVTVLGQP------KSTPTLTVFPPSSEELKEN-KATLVCLISNFSPSGVTVAW  157 (218)
T ss_dssp             CEEEEEEEEEEETTEEEEEECCCEEEEEESCC------CBCCEEEEECCCHHHHHTT-EEEEEEEEEEEBSSCCEEEE
T ss_pred             CEEEEEEEecCCCCceeEEEcCcEEEEEecCC------CCCceEEeeCCCcccccCC-cEEEEEEECcccCCCeEEEE
Confidence            9999999999876     22334556665321      1356666544444556677 9999999998 5767 7888

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.58  E-value=3.7e-14  Score=90.76  Aligned_cols=84  Identities=19%  Similarity=0.320  Sum_probs=68.4

Q ss_pred             CeeeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcce
Q psy7036         120 SIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESN  199 (254)
Q Consensus       120 ~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~  199 (254)
                      ....+..|+.+.|.|.+.+.|.+.+.|++++..+. .....+.....    .+.|.|.++..+|+|.|+|.|.|..|...
T Consensus        32 ~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~-~~~~~~~~~~~----~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~  106 (118)
T 2e7c_A           32 QTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAPLD-TSRVHVRTSDF----DTVFFVRQAARSDSGEYELSVQIENMKDT  106 (118)
T ss_dssp             SCEEEESSSCEEEEEEEEEESCCEEEEEETTEECC-CSSCEEEECSS----EEEEEESSCCTTTCEEEEEEEECSSCEEC
T ss_pred             CCEEEECCCEEEEEEEEccCCCCEEEEEECCEECC-CCcEEEEECCC----eEEEEECCCChhcCEEEEEEEEeCCCeEE
Confidence            45678889999999999999999999999999886 23333332221    23699999999999999999999999888


Q ss_pred             EEEEEEEec
Q psy7036         200 ATISLNFDS  208 (254)
Q Consensus       200 ~~~~~~v~~  208 (254)
                      ..+.|.|..
T Consensus       107 ~~~~l~V~~  115 (118)
T 2e7c_A          107 ATIRIRVVE  115 (118)
T ss_dssp             CEEEEEEEC
T ss_pred             EEEEEEEEc
Confidence            888888764

>3d9a_H Heavy chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_H 1gpo_H 3ks0_H* 1dqd_H 1ndm_B 1nak_H 1dqq_B 1dqm_H 1dqj_B 1nby_B 1nbz_B 1xgu_B 1ndg_B 1xgt_B 1xgp_B 1xgq_B 1xgr_B 1s5i_H 1f8t_H 1f90_H ...

Probab=99.58  E-value=1.9e-14  Score=101.77  Aligned_cols=126  Identities=17%  Similarity=0.280  Sum_probs=81.4

Q ss_pred             eeeecCCCeEEEEEEEeeCC--CCeEEEEECC--Eecc----c----------CCcceEEEcCCCCceeeEEEEccCCCC
Q psy7036         121 IRQEDDGKRLLFECRIQADP--APTVIWSHSG--VQVK----E----------DKRHKFSIDKDGHSYFASLEIIDVTIE  182 (254)
Q Consensus       121 ~~~~~~g~~~~l~C~~~~~~--~~~~~W~~~~--~~~~----~----------~~~~~~~~~~~~~~~~~~l~i~~~~~~  182 (254)
                      ...+..|+.+.|.|.+.+.+  .+.+.|+|+.  ....    .          ....++....+.......|.|.+++.+
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~   88 (210)
T 3d9a_H            9 PSLVKPSQTLSLTCSVTGDSITSDYWSWIRKFPGNRLEYMGYVSYSGSTYYNPSLKSRISITRDTSKNQYYLDLNSVTTE   88 (210)
T ss_dssp             CSEECTTSCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTSCEEECGGGTTTEEEEEEGGGTEEEEEECSCCGG
T ss_pred             CEEecCCCcEEEEEEEecccCCCCcEEEEEeCCCCCcEEEEEEcCCCCeEECcccCceEEEEecCCCCEEEEEECCCCcc
Confidence            34677899999999998875  3789999852  2110    0          001122221111111248999999999


Q ss_pred             CceeEEEEEEcCCCcceEEEEEEEecCCCCCCCCCCCCeeecCCccccccCCCCcEEEEEEEecc-CCC-ceeC
Q psy7036         183 DAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLVGE-PEP-TISW  254 (254)
Q Consensus       183 d~G~y~C~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~l~C~~~~~-p~p-~~~W  254 (254)
                      |+|.|.|.+.|.. .......+.|...      ...+|.+...+....+.+|+ .+.|.|.+.|. |.| .++|
T Consensus        89 D~G~Y~C~~~~~~-~~~~~~~l~V~~~------~~~~P~v~~~~~~~~~~~g~-~v~L~C~~~g~~P~p~~v~W  154 (210)
T 3d9a_H           89 DTATYYCANWDGD-YWGQGTLVTVSAA------KTTPPSVYPLAPGSAAQTNS-MVTLGCLVKGYFPEPVTVTW  154 (210)
T ss_dssp             GCEEEEEEETTSS-CBCCCEEEEECCC------CCBCCEEEEECCTTSCCCSS-EEEEEEEEEEEBSSCCEEEE
T ss_pred             cCEEEEEEEecCc-ccccceEEEeccC------CCCCCEEEEecCCcccccCC-cEEEEEEEeeEecCCcEEEE
Confidence            9999999999864 2222345555531      12245555444334567888 99999999987 888 8998

>1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer, SCFV, variable domain, immune system; 2.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=99.58  E-value=2.5e-14  Score=103.30  Aligned_cols=130  Identities=15%  Similarity=0.154  Sum_probs=85.6

Q ss_pred             CCCeeeecCCCeEEEEEEEeeCC----CCeEEEEECC--Eec---cc-------CCcceEEEcCCCCceeeEEEEccCCC
Q psy7036         118 KPSIRQEDDGKRLLFECRIQADP----APTVIWSHSG--VQV---KE-------DKRHKFSIDKDGHSYFASLEIIDVTI  181 (254)
Q Consensus       118 ~~~~~~~~~g~~~~l~C~~~~~~----~~~~~W~~~~--~~~---~~-------~~~~~~~~~~~~~~~~~~l~i~~~~~  181 (254)
                      .+....+.+|+.+.|.|.+.+.+    .+.+.|+|+.  ..+   ..       ....++.....+  ....|.|.+++.
T Consensus         7 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~--~~~~L~I~~v~~   84 (240)
T 1moe_A            7 SPASLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSR--TDFTLIIDPVEA   84 (240)
T ss_dssp             ECSEEEECTTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEET--TEEEEEESSCCG
T ss_pred             eCCeEEecCCCCEEEEEeCCCccccCCCceEEEEEECCCCCceEEEEEecccCcCCCccEEEEecC--CeEEEEEcCCCh
Confidence            34566788999999999998887    6789999952  111   00       001112211111  123799999999


Q ss_pred             CCceeEEEEEEcCCCc-ceEEEEEEEecCCCCCCCCCCCCeeecCCccccccCCCCcEEEEEEEeccCC--CceeC
Q psy7036         182 EDAGKYKVTAKNELGE-SNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLVGEPE--PTISW  254 (254)
Q Consensus       182 ~d~G~y~C~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~l~C~~~~~p~--p~~~W  254 (254)
                      +|+|.|+|.+.|..+. ......|.|.......    .++.+...+....+.+|+ .+.|.|.+.+.|.  +.+.|
T Consensus        85 ~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~----~~~~~~~~~~~~~v~~G~-~v~L~C~~~g~p~~~~~v~W  155 (240)
T 1moe_A           85 DDVATYYCQQTNEDPYTFGGGTKLEIKGGGSGG----GGEVQLQQSGAELVEPGA-SVKLSCTASGFNIKDTYMHW  155 (240)
T ss_dssp             GGCEEEEEEECSSSSCCBCCCEEEEECCCSCCC----CCCCEEEECCCEEECTTC-CEEEEEEEESSCGGGSCEEE
T ss_pred             hhCEEEEEEEccCCceeecCCEEEEEecCCCCC----CceEEEeCCCceEEeCCC-cEEEEEEEcCccCCCCEEEE
Confidence            9999999999998654 3344556665422100    122233345556788899 9999999999874  57888

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens}

Probab=99.57  E-value=1.9e-14  Score=100.41  Aligned_cols=121  Identities=12%  Similarity=0.283  Sum_probs=82.0

Q ss_pred             CCeeeecCCCeEEEEEEEee-CCCCeEEEEECCEecc---cCCc-------------ceEEEcCCCCceeeEEEEccCCC
Q psy7036         119 PSIRQEDDGKRLLFECRIQA-DPAPTVIWSHSGVQVK---EDKR-------------HKFSIDKDGHSYFASLEIIDVTI  181 (254)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~-~~~~~~~W~~~~~~~~---~~~~-------------~~~~~~~~~~~~~~~l~i~~~~~  181 (254)
                      +..+.+..|+.++|.|.+.+ .+.+.+.|++++..+.   ....             .++....+     .+|.|.+++.
T Consensus         5 p~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~R~~~~~~-----~sL~I~~v~~   79 (193)
T 2if7_A            5 PLMVNGILGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFTQS-----YSLQLSNLKM   79 (193)
T ss_dssp             CEEEEEETTSCEEECCCCCCCSCCCEEEEEETTEEEEEEECCSSSCCEEEECCHHHHTTEEECTT-----CCEEECSCCG
T ss_pred             CeEEEEEecCeEEEeccCCCcccccEEEEEECCEEEEEEecccCCCCceeecCccccccEEECCC-----eEEEECCCCc
Confidence            34567788999999999865 4456899999876542   1000             12222222     2799999999


Q ss_pred             CCceeEEEEEEcCCCcceEEEEEEEecCCCCCCCCCCCCeeecCCccccccCCC-CcEEEEEEEecc-CCCceeC
Q psy7036         182 EDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDL-NDIVIECRLVGE-PEPTISW  254 (254)
Q Consensus       182 ~d~G~y~C~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~g~-~~~~l~C~~~~~-p~p~~~W  254 (254)
                      +|+|.|+|.+.+..+.....+.|.|...       +..|.+...+.   ..+++ ..+.|.|.+.|. |.|.++|
T Consensus        80 ~D~G~Y~C~~~~~~~~~~~~~~L~V~~~-------~~~p~i~~~~~---~~~~g~~~v~L~C~~~g~~p~p~i~W  144 (193)
T 2if7_A           80 EDTGSYRAQISTKTSAKLSSYTLRILRQ-------LRNIQVTNHSQ---LFQNMTCELHLTCSVEDADDNVSFRW  144 (193)
T ss_dssp             GGCEEEEEEEECSSCEEEEEEEEEEECC-------CEEEEEEECCC------CSSEEEEEEEEEESCCTTCEEEE
T ss_pred             ccCceEEEEEEecCCCeEEEEEEEEEcc-------CCCCeEecCce---eecCCCceEEEEEEEecCCCceEEEE
Confidence            9999999999998887666777777641       11244443331   22333 269999999985 5789998

>1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H

Probab=99.57  E-value=1.8e-14  Score=105.07  Aligned_cols=124  Identities=15%  Similarity=0.217  Sum_probs=84.7

Q ss_pred             CeeeecCCCeEEEEEEEeeCC--CCeEEEEECC--Eecc----c-----------CCcceEEEcCCCCceeeEEEEccCC
Q psy7036         120 SIRQEDDGKRLLFECRIQADP--APTVIWSHSG--VQVK----E-----------DKRHKFSIDKDGHSYFASLEIIDVT  180 (254)
Q Consensus       120 ~~~~~~~g~~~~l~C~~~~~~--~~~~~W~~~~--~~~~----~-----------~~~~~~~~~~~~~~~~~~l~i~~~~  180 (254)
                      ....+.+|+.++|.|.+.+.+  .+.+.|+|+.  ..+.    .           ....++....+.......|.|.+++
T Consensus         8 ~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~   87 (256)
T 1nqb_A            8 GAELVKPGASVKLSCKASGYTFTSYWMHWVKQRPGRGLEWIGRIDPNSGGTKYNEKFKSKATLTVDKPSSTAYMQLSSLT   87 (256)
T ss_dssp             CCEEECTTCCEEEEEEECSSCGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCeeecCCCcEEEEEEeccccCCCceEEEEEECCCCCcEEEEEEecCCCceeeCcccCCeEEEEEecCCCEEEEEECcCC
Confidence            346788999999999998875  5789999842  2110    0           0011222221111112479999999


Q ss_pred             CCCceeEEEEEEcCCCc-----ceEEEEEEEecCCCCCCCCCCCCeeecCCccccccCCCCcEEEEEEEeccCCC-----
Q psy7036         181 IEDAGKYKVTAKNELGE-----SNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLVGEPEP-----  250 (254)
Q Consensus       181 ~~d~G~y~C~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~l~C~~~~~p~p-----  250 (254)
                      .+|+|.|.|.+.|..+.     ......|.|..          +|.+...|....+.+|+ .++|.|.+.+.|.+     
T Consensus        88 ~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~----------~~~v~~~p~~~~v~~G~-~v~L~C~~~~~~~~~~~~~  156 (256)
T 1nqb_A           88 SEDSAVYYCARYDYYGSSYFDYWGQGTTVTVSS----------DIELTQTPLSLPVSLGD-QASISCRSSQSIVHSNGNT  156 (256)
T ss_dssp             GGGCEEEEEEECCTTSSSSCSEECCCEEEEECC----------CCCEEEECSEEEECTTC-CEEEEEEESSCCBCTTSCB
T ss_pred             hhhCEEEEEEEeeccCccceeEEcCceeeeecc----------cccEEecCcEEEEecCC-cEEEEeEecCcccccccce
Confidence            99999999999998652     12335566653          34455566667788999 99999999998775     


Q ss_pred             ceeC
Q psy7036         251 TISW  254 (254)
Q Consensus       251 ~~~W  254 (254)
                      .+.|
T Consensus       157 ~v~W  160 (256)
T 1nqb_A          157 YLEW  160 (256)
T ss_dssp             CEEE
T ss_pred             EEEE
Confidence            8888

>2lu7_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=99.57  E-value=2.5e-14  Score=85.25  Aligned_cols=79  Identities=16%  Similarity=0.291  Sum_probs=62.5

Q ss_pred             CeeeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcce
Q psy7036         120 SIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESN  199 (254)
Q Consensus       120 ~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~  199 (254)
                      ..+.+.+|+.+.|.|.+.+ |.+.+.|+|+|..+.......+......    ..|.|.+++.+|+|.|+|.|    ++..
T Consensus         4 t~v~~~~G~~v~l~C~vs~-p~p~v~W~k~g~~l~~~~~~~~~~~~~~----~~L~I~~~~~~D~G~Y~C~a----~n~~   74 (84)
T 2lu7_A            4 TRVRSTPGGDLELVVHLSG-PGGPVRWYKDGERLASQGRVQLEQAGAR----QVLRVQGARSGDAGEYLCDA----PQDS   74 (84)
T ss_dssp             CCEEECTTSCEEEECCCSC-CSTTCEEEETTEECCCCSSEEEEECSSC----EEEEESSCSSTTCEEEEEEC----TTTC
T ss_pred             eEEEEecCCCEEEEEEECC-CCcEEEEEECCEEccccccEEEeecCCe----EEEEecCCCCcccEEEEEEE----CCEE
Confidence            4567889999999999855 8889999999999987766555443322    37999999999999999987    4456


Q ss_pred             EEEEEEEe
Q psy7036         200 ATISLNFD  207 (254)
Q Consensus       200 ~~~~~~v~  207 (254)
                      .++.|.|.
T Consensus        75 ~~a~l~V~   82 (84)
T 2lu7_A           75 RIFLVSVE   82 (84)
T ss_dssp             EEEEEEEC
T ss_pred             EEEEEEEE
Confidence            66777765

>3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D

Probab=99.57  E-value=3e-14  Score=103.93  Aligned_cols=133  Identities=17%  Similarity=0.272  Sum_probs=85.4

Q ss_pred             eeeecCCCeEEEEEEEeeCC--CCeEEEEECC--Eecc---------------cCCcceEEEcCCCCceeeEEEEccCCC
Q psy7036         121 IRQEDDGKRLLFECRIQADP--APTVIWSHSG--VQVK---------------EDKRHKFSIDKDGHSYFASLEIIDVTI  181 (254)
Q Consensus       121 ~~~~~~g~~~~l~C~~~~~~--~~~~~W~~~~--~~~~---------------~~~~~~~~~~~~~~~~~~~l~i~~~~~  181 (254)
                      ...+.+|+.++|.|.+.+.+  .+.+.|+|..  ..+.               .....++....+.......|.|.+++.
T Consensus        11 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~   90 (256)
T 3umt_A           11 LELVKPGASVKISCKTSGYTFTEYTMHWVKQSHGKSLEWIGGINPNNGGTSYNQKFKGKAILTVDKSSSTAYLELRSLTS   90 (256)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECSCCG
T ss_pred             ceEEcCCCCEEEEEEEecccccccEEEEEEECCCCCcEEEEEEeccCCcccccccccceEEEEEecCCCEEEEEECCCCc
Confidence            35578899999999998865  6789999842  1100               000111222211111223699999999


Q ss_pred             CCceeEEEEEEcC----CCcceEEEEEEEecCCCC------CCCCCCCCeeecCCccccccCCCCcEEEEEEEeccCCCc
Q psy7036         182 EDAGKYKVTAKNE----LGESNATISLNFDSDDAP------VPGEGTKPVFTERPVTKQSDDDLNDIVIECRLVGEPEPT  251 (254)
Q Consensus       182 ~d~G~y~C~~~~~----~~~~~~~~~~~v~~~~~~------~~~~~~~p~~~~~~~~~~~~~g~~~~~l~C~~~~~p~p~  251 (254)
                      +|+|.|.|.+.|.    .+.......|.|......      ......+|.+...|....+.+|+ .++|.|.+.+.|.+.
T Consensus        91 ~DsG~Y~C~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~-~v~L~C~~~~~~~~~  169 (256)
T 3umt_A           91 EDSAVYYCARDDRYPAWFAYWGQGTTVTVSSGGGGSGGGGSGGGGSTDIQLTQSPSSLSASLGE-RVSITCRASQDIGSN  169 (256)
T ss_dssp             GGCEEEEEEECCSTTCCSCEECCCEEEEECC---------------CCCCEEEECSEEEECTTC-CEEEEEEESSCCTTC
T ss_pred             ccCEEEEEEEccCCCccccEECCCEEEEEcCCCccccCcccCCCCccccEEEcCCCeEEEECCC-CEEEEEEEecCCCcE
Confidence            9999999999987    222334455666531000      00011255666677777888999 999999999998889


Q ss_pred             eeC
Q psy7036         252 ISW  254 (254)
Q Consensus       252 ~~W  254 (254)
                      +.|
T Consensus       170 v~W  172 (256)
T 3umt_A          170 LNW  172 (256)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            988

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A

Probab=99.56  E-value=2.2e-14  Score=97.96  Aligned_cols=111  Identities=13%  Similarity=0.257  Sum_probs=80.5

Q ss_pred             ccCCCeeeecCCCeEEEEEEEeeCC-CCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcC
Q psy7036         116 LKKPSIRQEDDGKRLLFECRIQADP-APTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNE  194 (254)
Q Consensus       116 ~~~~~~~~~~~g~~~~l~C~~~~~~-~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~  194 (254)
                      ...+....+.+|+.+.|.|.+.+.| .+.+.|++++..+.....              .+.|.+++.+|.|.|+|.+.|.
T Consensus         8 ~~~p~~~~v~~G~~v~l~C~~~~~p~~~~~~W~~~g~~~~~~~~--------------~~~~~~~~~~d~G~Y~C~~~~~   73 (170)
T 3ry4_A            8 KLEPPWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPTHTQ--------------PSYRFKANNNDSGEYTCQTGQT   73 (170)
T ss_dssp             EEESCCSEEETTCEEEEEEESCCCSSSSCEEEEETTEECTTCCS--------------SEEEEECCGGGCEEEEEEETTS
T ss_pred             EeCCCCeEEECCCcEEEEEEecCCCCcceEEEEECCeEcccCcc--------------ceEEEecccccCeEEEEEEeCC
Confidence            3344445677899999999998886 568999999988764321              4667789999999999999875


Q ss_pred             CCcceEEEEEEEecCCCCCCCCCCCCeeecCCccccccCCCCcEEEEEEEe-ccCCCceeC
Q psy7036         195 LGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLV-GEPEPTISW  254 (254)
Q Consensus       195 ~~~~~~~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~l~C~~~-~~p~p~~~W  254 (254)
                      ....  .+.+.|..          ++.+...+ ...+.+|+ .+.|.|.+. +.|.+.+.|
T Consensus        74 ~~s~--~~~l~v~~----------~~~~~~~~-~~~~~~g~-~~~l~C~~~~~~p~~~~~W  120 (170)
T 3ry4_A           74 SLSD--PVHLTVLF----------EWLVLQTP-HLEFQEGE-TIMLRCHSWKDKPLVKVTF  120 (170)
T ss_dssp             BCCC--CEEEEEEC----------CSEEEECS-CSEECTTC-CEEEEEEEGGGCCEEEEEE
T ss_pred             CceE--eEEEEEEC----------CceEecCC-CceeecCC-eEEEEEECCCCCCCceEEE
Confidence            4433  45555653          23333333 34567888 999999995 456688888

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.56  E-value=9.7e-15  Score=90.45  Aligned_cols=89  Identities=24%  Similarity=0.447  Sum_probs=69.7

Q ss_pred             CCCccccCCCeeeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEE
Q psy7036         111 LAPTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVT  190 (254)
Q Consensus       111 ~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~  190 (254)
                      .+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+.....  .....     ...|.|.++..+|.|.|+|.
T Consensus        10 ~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~g~~~~~~~~--~~~~~-----~~~L~i~~v~~~D~G~Y~C~   82 (99)
T 2yr3_A           10 VAPSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARS--TCEAG-----VAELHIQDALPEDHGTYTCL   82 (99)
T ss_dssp             EEEEEEECCCCEEECTTCCEEEECEEEEESCCCCEEEESSSBCSSCCC--EEETT-----EEEEEECSCCTTCCBCEEEE
T ss_pred             cCCceeecCCCCEEeCCCeEEEEEEEeeeCCCeEEEEECCEECcccce--EeeCC-----eEEEEECCCChhhCEEEEEE
Confidence            344555555667788999999999999999999999999987754332  11111     13799999999999999999


Q ss_pred             EEcCCCcceEEEEEEE
Q psy7036         191 AKNELGESNATISLNF  206 (254)
Q Consensus       191 ~~~~~~~~~~~~~~~v  206 (254)
                      |.|..|....++.|.|
T Consensus        83 a~N~~g~~~~~~~l~V   98 (99)
T 2yr3_A           83 AENALGQVSCSAWVTV   98 (99)
T ss_dssp             EECSSCEEEEECCEEE
T ss_pred             EEECCCeEEEEEEEEE
Confidence            9999998877776665

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1

Probab=99.56  E-value=6.2e-16  Score=99.72  Aligned_cols=97  Identities=20%  Similarity=0.318  Sum_probs=73.5

Q ss_pred             CCCccccCCCeeeecCCCeEEEEEEEeeCCCCe-EEEEECCEecccC--CcceEEEcCCCCceeeEEEEccCCCCCc-ee
Q psy7036         111 LAPTFLKKPSIRQEDDGKRLLFECRIQADPAPT-VIWSHSGVQVKED--KRHKFSIDKDGHSYFASLEIIDVTIEDA-GK  186 (254)
Q Consensus       111 ~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~-~~W~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~i~~~~~~d~-G~  186 (254)
                      .+|.+.. +....+.+|+.+.|.|.+.+.|.|. +.|++++..+...  .+..+..........+.|.|.++..+|. |.
T Consensus        13 ~~P~i~~-~~~~~~~~G~~v~l~C~~~g~P~p~~i~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~~G~   91 (122)
T 2cry_A           13 GPPIISS-TQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVISTLTISNIVRADFQTI   91 (122)
T ss_dssp             SSCCEEE-ECCCCCCTTSCCCCCEEECCSSCCSEEEEESSSCEECSEEETTEEEEEEEETTEEEEEEECTTCCHHHHHSC
T ss_pred             cCCCccC-CCeEEEecCCCEEEEEEEeecCCCcEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEEcCCChhhCCce
Confidence            4566555 5566788999999999999999987 9999999887642  2222211111222245899999999998 99


Q ss_pred             EEEEEEcCCCcceEEEEEEEec
Q psy7036         187 YKVTAKNELGESNATISLNFDS  208 (254)
Q Consensus       187 y~C~~~~~~~~~~~~~~~~v~~  208 (254)
                      |+|.|.|..|.....+.|.|..
T Consensus        92 Y~C~a~N~~G~~~~~~~l~V~~  113 (122)
T 2cry_A           92 YNCTAWNSFGSDTEIIRLKEQG  113 (122)
T ss_dssp             EEEEEECSSCEEEEEECCCCSC
T ss_pred             EEEEEECCCCeEEEEEEEEECC
Confidence            9999999999988888777764

>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse IGG, zinc-finger, DNA-binding, RNA-binding, tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A

Probab=99.56  E-value=1e-14  Score=103.01  Aligned_cols=124  Identities=13%  Similarity=0.183  Sum_probs=80.2

Q ss_pred             ecCCCeEEEEEEEeeCC----CCeEEEEECCEecccCCcc-eEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcc
Q psy7036         124 EDDGKRLLFECRIQADP----APTVIWSHSGVQVKEDKRH-KFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGES  198 (254)
Q Consensus       124 ~~~g~~~~l~C~~~~~~----~~~~~W~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~  198 (254)
                      +..|+.+.|.|.+.+.+    ...+.|+|++..+...... ........+...+.|.|.+++.+|.|.|+|.|.|..+..
T Consensus        15 v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~~~~~~~   94 (207)
T 2vol_A           15 LTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTKPREEQFNSTFRSVSELPIMHQDWLNGKEFKCRVNSAAFPA   94 (207)
T ss_dssp             HSTTSCCEEEEEEEEECTTCCCCEEEEEETTEEECCCEEECCCEETTTEEEEEEEEECCHHHHHTTCCEEEEEECTTCSS
T ss_pred             hccCCceEEEEEEeCcccCCCceEEEEEECCccccccccCCCcCcCCCcEEEEEEEEEehhHcCCCCEEEEEEEccCCCC
Confidence            67899999999998874    2489999999766422110 001111111223579999999999999999999988764


Q ss_pred             eEEEEEEEecCCCCCCCCCCCCeeecCCccccccCCCCcEEEEEEEecc-CCC-ceeC
Q psy7036         199 NATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLVGE-PEP-TISW  254 (254)
Q Consensus       199 ~~~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~l~C~~~~~-p~p-~~~W  254 (254)
                      .....+.+..      ....+|.+...+.......|+ .+.|.|.+.|. |++ .++|
T Consensus        95 ~~~~~v~~~~------~~~~~P~v~~~~~~~~~~~g~-~~~L~C~~~g~~P~~~~v~W  145 (207)
T 2vol_A           95 PIEKTISKTK------GRPKAPQVYTLPPPKEQMAKD-KVSLTCMITDFFPEDITVEW  145 (207)
T ss_dssp             CEEEEECCCC------CCCBCCEEEEECCCTGGGSSS-EEEEEEEEEEEBSSCCEEEE
T ss_pred             ceEEEeccCC------CCCcCCeEEEeCCCHHHhcCC-ceEEEEEEeeEECCCCEEEE
Confidence            3323332210      012356665444333344677 99999999985 553 7888

>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.56  E-value=4.6e-14  Score=89.05  Aligned_cols=97  Identities=21%  Similarity=0.397  Sum_probs=71.9

Q ss_pred             CCccccCCCeeeecCCCeEEEEEEEeeC---CCCeEEEEECCE-ecccC--CcceEEE--cCCCCceeeEEEEccCCCCC
Q psy7036         112 APTFLKKPSIRQEDDGKRLLFECRIQAD---PAPTVIWSHSGV-QVKED--KRHKFSI--DKDGHSYFASLEIIDVTIED  183 (254)
Q Consensus       112 ~~~~~~~~~~~~~~~g~~~~l~C~~~~~---~~~~~~W~~~~~-~~~~~--~~~~~~~--~~~~~~~~~~l~i~~~~~~d  183 (254)
                      .+.+...+..+.+.+|+.++|.|.+.+.   |.|.+.|+|+.. .+...  ....+..  ......+...|.|.++...|
T Consensus        12 ~~~f~~~P~~v~V~eG~~v~L~C~v~g~~~~p~P~V~W~Kgk~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D   91 (118)
T 2edn_A           12 TGVFLKKPDSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGARFSFKESHNSASNVYTVELHIGKVVLGD   91 (118)
T ss_dssp             SSSCSBCCCCCEEETTSCEECCEEEETTTSSSCCCCEEEETTTCCCCCSTTSSCEEEEEECSSSCEEEEEEEESSCCTTT
T ss_pred             cceEEECCCCeEEeCCCCEEEEEEEeccCCCCCCcEEEeeCCEeccCCCCccEEEeccccccccccceEEEEEeeCChhh
Confidence            4456667778889999999999999875   789999999742 22211  1222221  12222345689999999999


Q ss_pred             ceeEEEEEEcCCCcceEEEEEEEec
Q psy7036         184 AGKYKVTAKNELGESNATISLNFDS  208 (254)
Q Consensus       184 ~G~y~C~~~~~~~~~~~~~~~~v~~  208 (254)
                      +|.|+|.+.|..|..+..+.|.|..
T Consensus        92 ~G~Y~Cevsn~~g~~s~~~~L~V~~  116 (118)
T 2edn_A           92 RGYYRLEVKAKDTCDSCGFNIDVEA  116 (118)
T ss_dssp             CSCEEEEEECSSCEEEEEECCEEEC
T ss_pred             CEEEEEEEEEcCCcEEEEEEEEEEc
Confidence            9999999999999888888888874

>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A

Probab=99.56  E-value=6.5e-14  Score=99.27  Aligned_cols=125  Identities=22%  Similarity=0.316  Sum_probs=82.0

Q ss_pred             CCeeeecCCCeEEEEEEEeeC-------CCCeEEEEECCEec------c---------cCCcceEEEcCCCCceeeEEEE
Q psy7036         119 PSIRQEDDGKRLLFECRIQAD-------PAPTVIWSHSGVQV------K---------EDKRHKFSIDKDGHSYFASLEI  176 (254)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~-------~~~~~~W~~~~~~~------~---------~~~~~~~~~~~~~~~~~~~l~i  176 (254)
                      +..+.+.+|+.+.|.|.+.+.       +.+.+.|+|++...      .         .....++....+......+|.|
T Consensus         7 p~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I   86 (214)
T 2zg1_A            7 QKSVTVQEGLCVLVPCSFSYPWRSWYSSPPLYVYWFRDGEIPYYAEVVATNNPDRRVKPETQGRFRLLGDVQKKNCSLSI   86 (214)
T ss_dssp             CSEEEEETTCCEEECCEEECCCCCCSCCCCEEEEEEETTCCGGGCCBSEESCTTSCBCTTTTTTEEECSCGGGTBCCEEE
T ss_pred             CcEEEEecCccEEEeeeeecCCcccCCCCceEEEEEecCCCCcccceEecCCcccccCccccCceEEeccCCCCeEEEEE
Confidence            445678899999999998754       46689999986531      0         0111223332221112237999


Q ss_pred             ccCCCCCceeEEEEEEcCCCcc----eEEEEEEEecCCCCCCCCCCCCeeecCCccccccCCCCcEEEEEEEecc----C
Q psy7036         177 IDVTIEDAGKYKVTAKNELGES----NATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLVGE----P  248 (254)
Q Consensus       177 ~~~~~~d~G~y~C~~~~~~~~~----~~~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~l~C~~~~~----p  248 (254)
                      .+++.+|+|.|.|.+.+..+..    ...+.|.|...       ...|.+.. +.  .+.+|+ .+.|.|.+.+.    |
T Consensus        87 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~-------~~~p~i~~-~~--~~~~G~-~v~L~C~~~~~~~~~p  155 (214)
T 2zg1_A           87 GDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTAL-------IEKPDIHF-LE--PLESGR-PTRLSCSLPGSCEAGP  155 (214)
T ss_dssp             CSCCGGGCEEEEEEEEETTTEEEECCSSCEEEEEECC-------CCCCEEC---C--CCCTTC-CEEEEEECTTCCSCSS
T ss_pred             ccCCHhhCceEEEEEEcCCCceeeecCCceEEEEecC-------CCCCceec-Cc--cccCCC-eEEEEEEeccCCCCCC
Confidence            9999999999999999875322    23566666642       12445543 22  256788 99999999874    7


Q ss_pred             CCceeC
Q psy7036         249 EPTISW  254 (254)
Q Consensus       249 ~p~~~W  254 (254)
                      .|.++|
T Consensus       156 ~p~v~W  161 (214)
T 2zg1_A          156 PLTFSW  161 (214)
T ss_dssp             CCEEEE
T ss_pred             CceEEE
Confidence            889998

>3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens}

Probab=99.55  E-value=4e-14  Score=103.26  Aligned_cols=142  Identities=15%  Similarity=0.237  Sum_probs=90.6

Q ss_pred             CCccccCCCeeeecCCCeEEEEEEEeeC--CCCeEEEEECC--Eecc---------------cCCcceEEEcCCCCceee
Q psy7036         112 APTFLKKPSIRQEDDGKRLLFECRIQAD--PAPTVIWSHSG--VQVK---------------EDKRHKFSIDKDGHSYFA  172 (254)
Q Consensus       112 ~~~~~~~~~~~~~~~g~~~~l~C~~~~~--~~~~~~W~~~~--~~~~---------------~~~~~~~~~~~~~~~~~~  172 (254)
                      ++.+...+..+.+.+|+.++|.|.+.+.  +.+.+.|+|..  ....               .....++....+......
T Consensus         6 ~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~   85 (256)
T 3juy_B            6 HQVQLVQSGAEVKKPGASVKVSCQASGYRFSHFTVHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTA   85 (256)
T ss_dssp             -CCEEEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEE
T ss_pred             ceEEEEecCCceecCCCeEEEEEEeecccccCceEEEEEECCCCCcEEEEEEEcCCCcEeecccCcceEEEEEecCCCEE
Confidence            3444555667788999999999999873  56789999742  1100               000112222211111124


Q ss_pred             EEEEccCCCCCceeEEEEEEcC------------CCcceEEEEEEEecCCCCCC-----CCCCCCeeecCCccccccCCC
Q psy7036         173 SLEIIDVTIEDAGKYKVTAKNE------------LGESNATISLNFDSDDAPVP-----GEGTKPVFTERPVTKQSDDDL  235 (254)
Q Consensus       173 ~l~i~~~~~~d~G~y~C~~~~~------------~~~~~~~~~~~v~~~~~~~~-----~~~~~p~~~~~~~~~~~~~g~  235 (254)
                      .|.|.+++.+|+|.|.|.+.|.            .+.......|.|........     ....++.+...+....+.+|+
T Consensus        86 ~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~  165 (256)
T 3juy_B           86 YMELRSLRSADTAVYYCARVGEWGWDDSPYDNYYMDVWGKGTTVIVSSGGGGSGGGGSGGGGSEIVLTQAPGTLSLSPGE  165 (256)
T ss_dssp             EEEECSCCGGGCEEEEEEECCCCCTTCCTTTTCSCCEECCCEEEEECSCC----------CCCCCCEEEECSEEEECTTS
T ss_pred             EEEECCCCcccCEEEEEeEEeccccccccccccceeEECCceEEeecCCcccccccccCCCcceeEEEecCCeEEEeCCC
Confidence            7999999999999999999986            22233445566654221100     001134566667777889999


Q ss_pred             CcEEEEEEEeccCC-CceeC
Q psy7036         236 NDIVIECRLVGEPE-PTISW  254 (254)
Q Consensus       236 ~~~~l~C~~~~~p~-p~~~W  254 (254)
                       .++|.|.+.+.|. +.+.|
T Consensus       166 -~v~L~C~~~~~~~~~~v~W  184 (256)
T 3juy_B          166 -RATFSCRSSHSIRSRRVAW  184 (256)
T ss_dssp             -CEEEEEEESSCCTTCCEEE
T ss_pred             -CEEEEEEECCCcCCeeEEE
Confidence             9999999999876 78988

>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A*

Probab=99.55  E-value=1.8e-14  Score=104.60  Aligned_cols=124  Identities=17%  Similarity=0.232  Sum_probs=80.9

Q ss_pred             CCeeeecCCCeEEEEEEEeeCCCCe-----EEEEECCEecccC------CcceEEEcCCCC--------ceeeEEEEccC
Q psy7036         119 PSIRQEDDGKRLLFECRIQADPAPT-----VIWSHSGVQVKED------KRHKFSIDKDGH--------SYFASLEIIDV  179 (254)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~~~~~-----~~W~~~~~~~~~~------~~~~~~~~~~~~--------~~~~~l~i~~~  179 (254)
                      +....+..|+.+.|.|.+.+.|.+.     +.|++++......      ............        ...++|.|.++
T Consensus        10 p~~~~v~~G~~v~L~C~~~g~p~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~v   89 (248)
T 3pv7_A           10 GGTQITPLNDNVTIFCNIFYSQPLNITSMGITWFWKSLTFDKEVKVFEFFGDHQEAFRPGAIVSPWRLKSGDASLRLPGI   89 (248)
T ss_dssp             TSEEEEETTSCEEECCEEEESSCCCTTSCEEEEEEECSSCCCEEEEEEEESSCEEESSTTCBCCHHHHTTTBCCEEESSC
T ss_pred             CCCeEEeCCCCEEEeeEEecCCCcCCCceEEEEEEEcCCCCcceEEEEecCCcccccCCceEEEeccCCCCcEEEEeCCC
Confidence            3456778899999999999887765     9999964321100      000000000000        01236999999


Q ss_pred             CCCCceeEEEEEEcCCCcceEEEEEEEecCCCCCCCCCCCCeeecCCccccccCCCCcEEEEEEEec-cCCC-ceeC
Q psy7036         180 TIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLVG-EPEP-TISW  254 (254)
Q Consensus       180 ~~~d~G~y~C~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~l~C~~~~-~p~p-~~~W  254 (254)
                      +.+|+|.|+|.+.+..+.....+.|.|..          +|.+...+.. .+..|+ .+.|.|.+.| .|.| .++|
T Consensus        90 ~~~D~G~Y~C~~~~~~~~~~~~~~L~V~~----------~P~v~~~~~~-~~~~~~-~~~L~C~~~g~~P~pi~v~W  154 (248)
T 3pv7_A           90 QLEEAGEYRCEVVVTPLKAQGTVQLEVVA----------SPASRLLLDQ-VGMKEN-EDKYMCESSGFYPEAINITW  154 (248)
T ss_dssp             CGGGCEEEEEEEEETTEEEEEEEEEEEEB----------CCEEEEECC----------CEEEEEEEEEBSSCCEEEE
T ss_pred             CHHHCeEEEEEEEeCCccceeEEEEEEec----------CCceEEecCC-ccccCC-CcEEEEEEccEECCCeEEEE
Confidence            99999999999999887777777888874          4555544442 345667 7889999998 7988 8998

>1op3_H FAB 2G12, heavy chain; domain-swapped FAB 2G12, anti-carbohydrate antibody, immune system; HET: MAN; 1.75A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1om3_H* 1op5_H* 3oay_M* 1zlu_H* 1zlv_H* 1zlw_H* 2oqj_B 1zls_H* 3ob0_H* 3oau_H* 3oaz_H* 3ghe_H 3eyf_B 3eyo_B 3ghb_H 3c2a_H 1q1j_H 2fl5_H*

Probab=99.55  E-value=1.4e-13  Score=98.43  Aligned_cols=126  Identities=19%  Similarity=0.342  Sum_probs=81.1

Q ss_pred             eeeecCCCeEEEEEEEeeCC--CCeEEEEECC--Eecc---------------cCCcceEEEcCCCCceeeEEEEccCCC
Q psy7036         121 IRQEDDGKRLLFECRIQADP--APTVIWSHSG--VQVK---------------EDKRHKFSIDKDGHSYFASLEIIDVTI  181 (254)
Q Consensus       121 ~~~~~~g~~~~l~C~~~~~~--~~~~~W~~~~--~~~~---------------~~~~~~~~~~~~~~~~~~~l~i~~~~~  181 (254)
                      ...+.+|+.++|.|.+.+.+  .+.+.|+|+.  ..+.               .....++....+.......|.|.+++.
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~   88 (225)
T 1op3_H            9 GGLVKAGGSLILSCGVSNFRISAHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRDDLEDFVYLQMHKMRV   88 (225)
T ss_dssp             CEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CeEecCCCCEEEEEEecCcccCCceEEEEEeCCCCCcEEEEEEccCCCccccCcccCCceEEEecCCCCEEEEEECCCCh
Confidence            35677899999999998776  6789999853  2110               001112222211111124899999999


Q ss_pred             CCceeEEEEEEcCCC-----c---ceEEEEEEEecCCCCCCCCCCCCeeec-CCccccccCCCCcEEEEEEEecc-CCC-
Q psy7036         182 EDAGKYKVTAKNELG-----E---SNATISLNFDSDDAPVPGEGTKPVFTE-RPVTKQSDDDLNDIVIECRLVGE-PEP-  250 (254)
Q Consensus       182 ~d~G~y~C~~~~~~~-----~---~~~~~~~~v~~~~~~~~~~~~~p~~~~-~~~~~~~~~g~~~~~l~C~~~~~-p~p-  250 (254)
                      +|+|.|.|.+.+..+     .   ......|.|....      ..+|.+.. .+.. .+..|+ .+.|.|.+.|. |.| 
T Consensus        89 ~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~L~V~~~~------~~~P~v~~~~~~~-~~~~g~-~v~L~C~~~g~~P~p~  160 (225)
T 1op3_H           89 EDTAIYYCARKGSDRLSDNDPFDAWGPGTVVTVSPAS------TKGPSVFPLAPSS-KSTSGG-TAALGCLVKDYFPEPV  160 (225)
T ss_dssp             GGCEEEEEEEECCSSCCSSCCEEEECCCEEEEEESCS------CBCCEEEEECCCT-TCCCCC-EEEEEEEEEEEBSSCC
T ss_pred             hhCEEEEEEEecCCCccccccceeecCCEEEecccCC------CcCCeEEEecccc-cccCCC-cEEEEEEEEeEECCCe
Confidence            999999999999764     1   1123456666411      12344433 3333 456788 99999999987 777 


Q ss_pred             ceeC
Q psy7036         251 TISW  254 (254)
Q Consensus       251 ~~~W  254 (254)
                      .++|
T Consensus       161 ~v~W  164 (225)
T 1op3_H          161 TVSW  164 (225)
T ss_dssp             EEEC
T ss_pred             EEEE
Confidence            8999

>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A*

Probab=99.55  E-value=7.6e-14  Score=97.47  Aligned_cols=110  Identities=15%  Similarity=0.164  Sum_probs=80.9

Q ss_pred             eeeecCCCeEEEEEEEeeCCCC--eEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcc
Q psy7036         121 IRQEDDGKRLLFECRIQADPAP--TVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGES  198 (254)
Q Consensus       121 ~~~~~~g~~~~l~C~~~~~~~~--~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~  198 (254)
                      .+.+..|+++.|.|.+ +.|.|  .|.|.+.+..+   ..  ......+    ..|.|.+++.+|.|.|.|.+.|..+..
T Consensus        16 ~v~v~~G~sv~L~C~a-~~p~P~~~i~W~~~~~~l---~~--~~~~~~~----~~L~I~~v~~~d~G~Y~C~a~n~~~~~   85 (210)
T 1gsm_A           16 VVAVALGASRQLTCRL-ACADRGASVQWRGLDTSL---GA--VQSDTGR----SVLTVRNASLSAAGTRVCVGSCGGRTF   85 (210)
T ss_dssp             EEEEETTCCEEEEEEE-CCSSTTCEEEEESSTTTT---CC--EEEESSE----EEEEECSCCGGGCEEEEEEEEETTEEE
T ss_pred             ceEEeCCCCEEEEEEC-CCCCCCcceEEeeccccc---Cc--EEecCCc----cEEEECccCcccCceEEEEEEeCCCce
Confidence            3578899999999999 88877  99999855333   11  1111111    379999999999999999999988877


Q ss_pred             eEEEEEEEecCCCCCCCCCCCCeeec-CCccccccCCCCcEEEEEEEecc-CCC----ceeC
Q psy7036         199 NATISLNFDSDDAPVPGEGTKPVFTE-RPVTKQSDDDLNDIVIECRLVGE-PEP----TISW  254 (254)
Q Consensus       199 ~~~~~~~v~~~~~~~~~~~~~p~~~~-~~~~~~~~~g~~~~~l~C~~~~~-p~p----~~~W  254 (254)
                      ...+.|.|..          +|.... .+.  .+..|+ .+ |.|.+.+. |.+    .|.|
T Consensus        86 ~~~~~ltV~~----------~P~~~~i~~~--~~~~g~-~~-l~C~a~g~~P~~~~~lti~W  133 (210)
T 1gsm_A           86 QHTVQLLVYA----------FPNQLTVSPA--ALVPGD-PE-VACTAHKVTPVDPNALSFSL  133 (210)
T ss_dssp             EEEEEEEEEB----------CCSEEEEESS--SBCTTC-CE-EEEEEEEEBCCCTTTEEEEE
T ss_pred             EEEEEEEEEe----------cCCCcEEccc--eEEeCC-ce-EEEEeCCCCCCCCCCcEEEE
Confidence            7888888885          332222 232  566777 78 99999986 644    6877

>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A

Probab=99.55  E-value=4.8e-14  Score=101.70  Aligned_cols=133  Identities=11%  Similarity=0.164  Sum_probs=82.0

Q ss_pred             CCeeeecCCCeEEEEEEEeeCCCCeEEEEECC--Eecc-------------cCCcceEEEcCCCCceeeEEEEccCCCCC
Q psy7036         119 PSIRQEDDGKRLLFECRIQADPAPTVIWSHSG--VQVK-------------EDKRHKFSIDKDGHSYFASLEIIDVTIED  183 (254)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~--~~~~-------------~~~~~~~~~~~~~~~~~~~l~i~~~~~~d  183 (254)
                      +..+.+.+|+.++|.|. .+.+.+.+.|+|+.  ....             .....++..... ......|.|.+++.+|
T Consensus         7 p~~~~v~~G~~v~L~C~-~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~L~I~~v~~~D   84 (238)
T 2p1y_A            7 PRNKVAVTGGKVTLSCN-QTNNHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRP-SQENFSLILELATPSQ   84 (238)
T ss_dssp             CSEEEEETTCCEEEEEE-ECSCCSEEEEEEEETTTEEEEEEEESSTTCCEECSSCTTCEEECC-SSSBCEEEESSCCGGG
T ss_pred             ccceEEeCCCEEEEEee-cCCCCccEEEEEECCCCCcEEEEEEecCcceeCCCccceEEEEcc-CCceEEEEEecCCccc
Confidence            45667889999999999 67888999999952  1110             000111222110 0012379999999999


Q ss_pred             ceeEEEEEEcCCCcc-----eEEEEEEEecCCCCC-C-CCCCCCeeecCCccccccCCCCcEEEEEEEeccCCCceeC
Q psy7036         184 AGKYKVTAKNELGES-----NATISLNFDSDDAPV-P-GEGTKPVFTERPVTKQSDDDLNDIVIECRLVGEPEPTISW  254 (254)
Q Consensus       184 ~G~y~C~~~~~~~~~-----~~~~~~~v~~~~~~~-~-~~~~~p~~~~~~~~~~~~~g~~~~~l~C~~~~~p~p~~~W  254 (254)
                      +|.|+|.+.|..+..     .....+.|....+.. + .....+.+...|....+.+|+ .+.|.|.+.+.|.|.+.|
T Consensus        85 sG~Y~C~~~~~~g~~~~~~~~~~~~l~V~~~~~~~~p~~~~~~~~v~~~p~~~~v~~G~-~v~L~C~~~~~p~~~i~W  161 (238)
T 2p1y_A           85 TSVYFCASGDLGQTNERLFFGHGTKLSVLGSADDAKKDAAKKDGQVRQSPQSLTVWEGE-TAILNCSYENSAFDYFPW  161 (238)
T ss_dssp             CEEEEEEEEC------CEEECCCEEEEEECCCHHHHHHHHHHHTCCEEECSEEEEETTS-CEEEEEECCCTTCCEEEE
T ss_pred             CeeEEEEEEeCCCccccceeCCCeEEEEeccCCCCcCCcccceeeEEccCceEEEeCCC-eEEEEEEEecCCCCcEEE
Confidence            999999999876521     123345554311000 0 000001455556666788999 999999999999999988

>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L* 1mfb_L* ...

Probab=99.55  E-value=4.7e-14  Score=99.88  Aligned_cols=127  Identities=17%  Similarity=0.200  Sum_probs=82.4

Q ss_pred             CCeeeecCCCeEEEEEEEeeCC---CCeEEEEECC--Eecc----------cCCcceEEEcCCCCceeeEEEEccCCCCC
Q psy7036         119 PSIRQEDDGKRLLFECRIQADP---APTVIWSHSG--VQVK----------EDKRHKFSIDKDGHSYFASLEIIDVTIED  183 (254)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~~---~~~~~W~~~~--~~~~----------~~~~~~~~~~~~~~~~~~~l~i~~~~~~d  183 (254)
                      +....+..|+.+.|.|.+.+.+   .+.+.|+|++  ..+.          .....++.....+  ..+.|.|.+++.+|
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~--~~~~L~I~~v~~~D   84 (212)
T 1q0x_L            7 ESALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIG--DKAALTITGAQTED   84 (212)
T ss_dssp             CSEEEECTTCCEEEEEEESSSCCCGGGCCEEEEEETTTEEEEEEETTTEECTTCCTTEEEEEET--TEEEEEESSCCGGG
T ss_pred             CCeEeecCCCCEEEEEEecccccCCCCeEEEEEeCCCCCceEEEEcCcccCCcccccEEEEeeC--CEEEEEECCCCccC
Confidence            4567788999999999998877   4689999863  2210          0001112211111  12379999999999


Q ss_pred             ceeEEEEEEcCCCcc-eEEEEEEEecCCCCCCCCCCCCeeecCCccccccCCCCcEEEEEEEeccCC-C-ceeC
Q psy7036         184 AGKYKVTAKNELGES-NATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLVGEPE-P-TISW  254 (254)
Q Consensus       184 ~G~y~C~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~l~C~~~~~p~-p-~~~W  254 (254)
                      +|.|.|.+.|..+.. .....+.|....      ..+|.+...+....+..|+ .+.|.|.+.|.++ + .++|
T Consensus        85 ~G~Y~C~~~~~~~~~~~~~~~l~V~~~~------~~~P~v~~~~~~~~~~~g~-~v~L~C~~~g~~p~~~~v~W  151 (212)
T 1q0x_L           85 EAIYFCALWSNNKLVFGGGTKLTVLGQP------KSSPTVTLFPPSSEELSTA-KATLVCTITDFYPGVVTVDW  151 (212)
T ss_dssp             CEEEEEEEECSSCEEECCCEEEEECCSC------CBCCEEEEECCCHHHHTTT-EEEEEEEEEEEBSSCCEEEE
T ss_pred             CEEEEEEEecCchhhcCCCeEEEEecCC------CCCCeeEEeCCCHHHccCC-cEEEEEEEEEEeCCCeEEEE
Confidence            999999999976532 233445553211      1256666544434455788 9999999998644 3 7888

>3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA, IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB: 3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A

Probab=99.55  E-value=6.7e-14  Score=102.15  Aligned_cols=134  Identities=15%  Similarity=0.245  Sum_probs=84.7

Q ss_pred             CeeeecCCCeEEEEEEEeeC--CCCeEEEEECC--Ee--cc------------cCCcceEEEcCCCCceeeEEEEccCCC
Q psy7036         120 SIRQEDDGKRLLFECRIQAD--PAPTVIWSHSG--VQ--VK------------EDKRHKFSIDKDGHSYFASLEIIDVTI  181 (254)
Q Consensus       120 ~~~~~~~g~~~~l~C~~~~~--~~~~~~W~~~~--~~--~~------------~~~~~~~~~~~~~~~~~~~l~i~~~~~  181 (254)
                      ....+.+|+.++|.|.+.+.  +.+.+.|+|..  ..  ..            .....++....+.......|.|.+++.
T Consensus        16 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~   95 (257)
T 3gkz_A           16 GPSLVKPSQTLSLTCSVTGDSVTSGYWSWIRQFPGNKLDYMGYISYRGSTYYNPSLKSRISITRDTSKNQVYLQLKSVSS   95 (257)
T ss_dssp             CCSEECTTCCEEEEEEEEESCCSSCEEEEEEECTTSCEEEEEEEETTCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCG
T ss_pred             CCeEEcCCCcEEEEEEEEcccccceEEEEEEECCCCCcEEEEEEecCCcEEecccccccEEEEEecCCceEEEEECCCCh
Confidence            34567889999999999884  46789999842  11  10            000111222211111224799999999


Q ss_pred             CCceeEEEEEEcCCCc----ceEEEEEEEecCCC----CCCCCCCCCeeecCCccccccCCCCcEEEEEEEeccCCC-ce
Q psy7036         182 EDAGKYKVTAKNELGE----SNATISLNFDSDDA----PVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLVGEPEP-TI  252 (254)
Q Consensus       182 ~d~G~y~C~~~~~~~~----~~~~~~~~v~~~~~----~~~~~~~~p~~~~~~~~~~~~~g~~~~~l~C~~~~~p~p-~~  252 (254)
                      +|+|.|.|.+.|..+.    ......+.|.....    +.......+.+...+....+.+|+ .++|.|.+.+.|.+ .+
T Consensus        96 ~DsG~Y~C~~~n~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~-~v~L~C~~~~~~~~~~v  174 (257)
T 3gkz_A           96 EDTATYYCSYFDSDDYAMEYWGQGTSVTVSGGGGSGGGGSGGGGSQIVLTQSPAIMSASPGE-KVTLTCSASSSVSSSHL  174 (257)
T ss_dssp             GGCEEEEEEEECTTCTTCEEECCCEEEEEC---------CTTCCCCCCEECSCSEEEECTTC-CEEEEEEESSCCCGGGE
T ss_pred             hhCEEEEEEEecCCCcceeEEcCCEEEeecCchhhcccccCCCccceEEEcCCceEEEeCCC-cEEEEEEEccCccceEE
Confidence            9999999999997321    22334566653210    000011245666667777888999 99999999998887 88


Q ss_pred             eC
Q psy7036         253 SW  254 (254)
Q Consensus       253 ~W  254 (254)
                      .|
T Consensus       175 ~W  176 (257)
T 3gkz_A          175 YW  176 (257)
T ss_dssp             EE
T ss_pred             EE
Confidence            88

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A

Probab=99.55  E-value=2e-14  Score=89.16  Aligned_cols=83  Identities=25%  Similarity=0.481  Sum_probs=65.8

Q ss_pred             CeeeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcce-EEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcc
Q psy7036         120 SIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHK-FSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGES  198 (254)
Q Consensus       120 ~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~  198 (254)
                      ....+..|+.+.|.|.+.+.|.+.+.|++++..+....... .....+.    ..|.|.+++.+|+|.|+|.|.|..|..
T Consensus        16 ~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~----~~L~i~~v~~~D~G~Y~C~a~N~~g~~   91 (100)
T 3caf_A           16 RLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQH----WSLIMESVVPSDKGNYTCVVENEYGSI   91 (100)
T ss_dssp             CEEEECTTCCEEEECCEEEESCCEEEEEETTEECCGGGSTTCCEEEGGG----TEEEECSCCGGGCEEEEEEEEETTEEE
T ss_pred             cEEEecCCCEEEEEEEccccCCCEEEEEECCEEcccccccccEEEecCe----EEEEEccCCcCCCEEEEEEEEeCCCEE
Confidence            45678899999999999999999999999998876543221 1111111    279999999999999999999999988


Q ss_pred             eEEEEEEE
Q psy7036         199 NATISLNF  206 (254)
Q Consensus       199 ~~~~~~~v  206 (254)
                      ..++.|.|
T Consensus        92 ~~~~~l~V   99 (100)
T 3caf_A           92 NHTYHLDV   99 (100)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEEE
Confidence            77777765

>1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1

Probab=99.55  E-value=5.9e-14  Score=102.42  Aligned_cols=132  Identities=15%  Similarity=0.237  Sum_probs=84.1

Q ss_pred             eeecCCCeEEEEEEEeeCC--CCeEEEEECC--Eecc--------------cCCcceEEEcCCCCceeeEEEEccCCCCC
Q psy7036         122 RQEDDGKRLLFECRIQADP--APTVIWSHSG--VQVK--------------EDKRHKFSIDKDGHSYFASLEIIDVTIED  183 (254)
Q Consensus       122 ~~~~~g~~~~l~C~~~~~~--~~~~~W~~~~--~~~~--------------~~~~~~~~~~~~~~~~~~~l~i~~~~~~d  183 (254)
                      ..+.+|+.++|.|.+.+.|  .+.+.|+|+.  ..+.              .....++....+.......|.|.+++.+|
T Consensus        10 ~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D   89 (257)
T 1f3r_B           10 GLVRPSETLSLTCTVSGFSLTSFSVSWVRHPSGKGPEWMGRMWYDGYTAYNSALKSRLSISRDTSKNQVFLKMNSLQTDD   89 (257)
T ss_dssp             SEECTTSEEEEEEEEESSCTTTSCCEEEEEETTSCCEEEEEECSSSCEEECSSSSTTEEEEEETTTTEEEEEEESCCTTC
T ss_pred             ccccCCceEEEEEEEecccCCCccEEEEEeCCCCCcEEEEEEecCCceeeCcccCCcEEEEEECCCCEEEEEECCCCccc
Confidence            4577899999999998875  6789999862  1110              00011222221111112479999999999


Q ss_pred             ceeEEEEEEcCCC------cc---eEEEEEEEecCCCC-----CCCCCCCCeeecCCccccccCCCCcEEEEEEEeccCC
Q psy7036         184 AGKYKVTAKNELG------ES---NATISLNFDSDDAP-----VPGEGTKPVFTERPVTKQSDDDLNDIVIECRLVGEPE  249 (254)
Q Consensus       184 ~G~y~C~~~~~~~------~~---~~~~~~~v~~~~~~-----~~~~~~~p~~~~~~~~~~~~~g~~~~~l~C~~~~~p~  249 (254)
                      +|.|.|.+.|..|      ..   .....|.|......     .+....++.+...|....+.+|+ .++|.|.+.+.|.
T Consensus        90 sG~Y~C~a~n~~g~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~-~v~L~C~~~~~~~  168 (257)
T 1f3r_B           90 TGTYYCTRDLYGGYPLGFWYFDFWGPGTMVTVSSGGGGSGGGGSGGGGSDIKLTQSPSLLSASVGD-RVTLSCKGSQNIN  168 (257)
T ss_dssp             CEEEEEEEESSSSCCSSCCCEEEECCCEEEEECSSCCSSCCSSSCCCCCEECSCEETSEECCCTTC-CEEEEEECSSCCB
T ss_pred             CEEEEEEEcccccCccccccccccCCceEEEEEeCCccccccccCCCccceEEEccCCEEEEcCCC-CEEEEEEECCcCC
Confidence            9999999999854      11   12345666542100     00001123344456666788999 9999999999988


Q ss_pred             CceeC
Q psy7036         250 PTISW  254 (254)
Q Consensus       250 p~~~W  254 (254)
                      +.+.|
T Consensus       169 ~~v~W  173 (257)
T 1f3r_B          169 NYLAW  173 (257)
T ss_dssp             TCEEE
T ss_pred             CcEEE
Confidence            89988

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.55  E-value=1.9e-14  Score=110.23  Aligned_cols=107  Identities=16%  Similarity=0.175  Sum_probs=67.3

Q ss_pred             CCCceeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCC--cceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcC
Q psy7036          14 KPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDT--RTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNK   91 (254)
Q Consensus        14 ~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~   91 (254)
                      .+..+.+.+|+++.|.|.+.| |.+.++|++++..+....  ..++.. ..+      .|.|.+++.+|+|.|+|.|.|.
T Consensus       252 ~~~~v~v~~G~~~~l~C~~~g-p~p~i~W~~~~~~~~~~~~~~~r~~~-~~~------~L~I~~v~~~D~G~Y~C~a~N~  323 (361)
T 2xot_A          252 KESAWEAHLGDTLTIRCDTKQ-QGMTKVWVSPSNEQVLSQGSNGSVSV-RNG------DLFFKKVQVEDGGVYTCYAMGE  323 (361)
T ss_dssp             CCCCCEEETTCCEEECCCCSS-TTCEEEEECTTSCBCCSCCSSSSEEE-ETT------EEEESSCCTTSCEEEEEEEECS
T ss_pred             cccCceecCCCeEEEEeEeeC-CCCeEEEEeCCCeeEeecccCCceEe-ecC------eEEEeecCcccCEEEEEEEecC
Confidence            345668999999999999998 889999999776543221  112322 222      7999999999999999999999


Q ss_pred             CCceEEEEEEEEeccccCCCCCccccCCCeeeecCCCeEEEEEEEeeCCCCeEE
Q psy7036          92 MGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQADPAPTVI  145 (254)
Q Consensus        92 ~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~  145 (254)
                      .|.....+.|.|..      .+           ..|..+.+.|.+.|.|.|.+.
T Consensus       324 ~g~~~~~~~l~V~~------~~-----------~~g~~~~l~C~~~g~P~P~i~  360 (361)
T 2xot_A          324 TFNETLSVELKVYN------FT-----------LHGHHDTLNAAADPWSHPQFE  360 (361)
T ss_dssp             SCEEEEEEEEEEES------SC-----------CC-------------------
T ss_pred             CCccEEEEEEEEEe------ee-----------ccCCceEEEEEeCCCCCCccc
Confidence            99888888888852      11           467789999999999988763

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.54  E-value=2.2e-14  Score=109.77  Aligned_cols=106  Identities=17%  Similarity=0.231  Sum_probs=66.9

Q ss_pred             CCeeeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCC--cceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCC
Q psy7036         119 PSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDK--RHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELG  196 (254)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~  196 (254)
                      +....+.+|+.+.|.|.+.+ |.+.+.|++++..+....  ..++.. .++     .|.|.+++.+|+|.|+|.|.|..|
T Consensus       253 ~~~v~v~~G~~~~l~C~~~g-p~p~i~W~~~~~~~~~~~~~~~r~~~-~~~-----~L~I~~v~~~D~G~Y~C~a~N~~g  325 (361)
T 2xot_A          253 ESAWEAHLGDTLTIRCDTKQ-QGMTKVWVSPSNEQVLSQGSNGSVSV-RNG-----DLFFKKVQVEDGGVYTCYAMGETF  325 (361)
T ss_dssp             CCCCEEETTCCEEECCCCSS-TTCEEEEECTTSCBCCSCCSSSSEEE-ETT-----EEEESSCCTTSCEEEEEEEECSSC
T ss_pred             ccCceecCCCeEEEEeEeeC-CCCeEEEEeCCCeeEeecccCCceEe-ecC-----eEEEeecCcccCEEEEEEEecCCC
Confidence            34567889999999999988 899999999776543221  123333 333     799999999999999999999999


Q ss_pred             cceEEEEEEEecCCCCCCCCCCCCeeecCCccccccCCCCcEEEEEEEeccCCCcee
Q psy7036         197 ESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLVGEPEPTIS  253 (254)
Q Consensus       197 ~~~~~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~l~C~~~~~p~p~~~  253 (254)
                      .....+.+.|..          .           ..+|+ .+.|.|.+.|.|.|.|+
T Consensus       326 ~~~~~~~l~V~~----------~-----------~~~g~-~~~l~C~~~g~P~P~i~  360 (361)
T 2xot_A          326 NETLSVELKVYN----------F-----------TLHGH-HDTLNAAADPWSHPQFE  360 (361)
T ss_dssp             EEEEEEEEEEES----------S-----------CCC--------------------
T ss_pred             ccEEEEEEEEEe----------e-----------eccCC-ceEEEEEeCCCCCCccc
Confidence            888888888853          1           15677 99999999999999874

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A

Probab=99.54  E-value=3e-14  Score=86.87  Aligned_cols=88  Identities=15%  Similarity=0.129  Sum_probs=67.0

Q ss_pred             CCCccccCCCeeeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEE
Q psy7036         111 LAPTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVT  190 (254)
Q Consensus       111 ~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~  190 (254)
                      .++.+...+....+.+|+.+.|.|.+.+ +.+.+.|+|+|..+....+..+......    ..|.|.+++.+|+|.|+|.
T Consensus         4 ~~~~~~~~~~~~~v~~G~~v~l~C~v~~-~~~~v~W~k~g~~i~~~~~~~i~~~g~~----~~L~I~~v~~~D~G~Y~C~   78 (93)
T 1waa_A            4 ALIEVEKPLYGVEVFVGETAHFEIELSE-PDVHGQWKLKGQPLAASPDCEIIEDGKK----HILILHNCQLGMTGEVSFQ   78 (93)
T ss_dssp             CCCCEEECCCCEEEETTSCEEEEEEESS-SSCCCEEEETTEECCCBTTEEEEEETTE----EEEEECSCCGGGCEEEEEE
T ss_pred             CCcEeeccCcceEEeCCCCEEEEEEECC-CCCeEEEEECCEECcCCCCEEEEEECCE----EEEEECCCChhhCEEEEEE
Confidence            3556666667788999999999999975 4578999999999876665554433221    3799999999999999999


Q ss_pred             EEcCCCcceEEEEEEEe
Q psy7036         191 AKNELGESNATISLNFD  207 (254)
Q Consensus       191 ~~~~~~~~~~~~~~~v~  207 (254)
                      |.|.    ..+..|.|.
T Consensus        79 a~n~----~~sa~L~V~   91 (93)
T 1waa_A           79 AANT----KSAANLKVK   91 (93)
T ss_dssp             ETTE----EEEEEEEEE
T ss_pred             ECCC----cEEEEEEEE
Confidence            9773    345556654

>3sob_L Antibody light chain; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L*

Probab=99.54  E-value=5.3e-14  Score=101.33  Aligned_cols=126  Identities=19%  Similarity=0.279  Sum_probs=83.8

Q ss_pred             CCeeeecCCCeEEEEEEEeeCCCCeEEEEECCE--e---cc-------cCCcceEEEcCCCCceeeEEEEccCCCCCcee
Q psy7036         119 PSIRQEDDGKRLLFECRIQADPAPTVIWSHSGV--Q---VK-------EDKRHKFSIDKDGHSYFASLEIIDVTIEDAGK  186 (254)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~--~---~~-------~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~  186 (254)
                      +....+.+|+.+.|.|.+.+.+.+.+.|+|+..  .   +.       .....++.....+  ....|.|.+++.+|+|.
T Consensus        31 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~--~~~~L~I~~v~~~D~G~  108 (237)
T 3sob_L           31 PSSLSASVGDRVTITCRASQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGSG--TDFTLTISSLQPEDFAT  108 (237)
T ss_dssp             CSEEEEETTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEET--TEEEEEESSCCGGGCEE
T ss_pred             CCeEEEeCCCcEEEEEecCCCCCceEEEEEECCCCCCEEEEEeccccCCCCCCcEEEEcCC--CEEEEEECCCChhhCeE
Confidence            455678899999999999888888999998431  1   00       0001111111111  12479999999999999


Q ss_pred             EEEEEEcCCCcc-eEEEEEEEecCCCCCCCCCCCCeeecCCccccccCCCCcEEEEEEEecc-C-CCceeC
Q psy7036         187 YKVTAKNELGES-NATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLVGE-P-EPTISW  254 (254)
Q Consensus       187 y~C~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~l~C~~~~~-p-~p~~~W  254 (254)
                      |+|.+.+..+.. .....+.|..       ...+|.+...+....+.+|+ .+.|.|.+.+. | .|.++|
T Consensus       109 Y~C~~~~~~~~~~~~~~~l~V~~-------~~~~p~v~~~~~~~~~~~g~-~v~l~C~~~~~~p~~~~v~W  171 (237)
T 3sob_L          109 YYCQQSYTTPPTFGQGTKVEIKR-------TVAAPSVFIFPPSDEQLKSG-TASVVCLLNNFYPREAKVQW  171 (237)
T ss_dssp             EEEEECSSSSCEECCCEEEEEEC-------CCBCCEEEEECCCHHHHHHT-EEEEEEEEEEEBSSCCEEEE
T ss_pred             EEEeeccCCceEEcCcEEEEEec-------CCCCCceEEeCCChhhccCC-ceEEEEEEcccCCCceEEEE
Confidence            999998876532 2334455543       12356666555544556788 89999999885 5 478988

>2lvc_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=99.54  E-value=5.9e-14  Score=84.99  Aligned_cols=85  Identities=13%  Similarity=0.246  Sum_probs=61.7

Q ss_pred             CCccccCCCe--eeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEE
Q psy7036         112 APTFLKKPSI--RQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKV  189 (254)
Q Consensus       112 ~~~~~~~~~~--~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C  189 (254)
                      |+.+......  +.+.+|+.+.|.|.+.+ |.+.+.|+|+|..+.......+....+.    ..|.|.++..+|+|.|+|
T Consensus         4 P~~i~~p~~~~~v~~~~g~~v~l~C~v~~-p~~~v~W~k~g~~i~~~~~~~i~~~~~~----~~L~I~~v~~~D~G~Y~C   78 (91)
T 2lvc_A            4 PVHIVDPREHVFVHAITSECVMLACEVDR-EDAPVRWYKDGQEVEESDFVVLENEGPH----RRLVLPATQPSDGGEFQC   78 (91)
T ss_dssp             CCCCCBCCSCEEEECCTTCCEEEEEECSC-TTSCCEEEETTSCCCCCSSCEEEEETTE----EEEEESSCCGGGCSEEEE
T ss_pred             CcEEeccCCCeEEEEECCCcEEEEEEECC-CCcEEEEEECCEEeeeeeeeeEEecCCe----EEEEeCCCChhhcEEEEE
Confidence            4444433333  34568999999999854 7888999999999987766555443322    379999999999999999


Q ss_pred             EEEcCCCcceEEEEEE
Q psy7036         190 TAKNELGESNATISLN  205 (254)
Q Consensus       190 ~~~~~~~~~~~~~~~~  205 (254)
                      .|.|    ...++.|.
T Consensus        79 ~a~n----~~~~~~lt   90 (91)
T 2lvc_A           79 VAGD----ECAYFTVT   90 (91)
T ss_dssp             ECSS----CEEEEEEE
T ss_pred             EEcc----eEEEEEEE
Confidence            9855    44555444

>1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=99.53  E-value=9.2e-14  Score=102.80  Aligned_cols=133  Identities=17%  Similarity=0.289  Sum_probs=84.7

Q ss_pred             CeeeecCCCeEEEEEEEeeCC--CCeEEEEECCE--ecc---------------cCCcceEEEcCCCCceeeEEEEccCC
Q psy7036         120 SIRQEDDGKRLLFECRIQADP--APTVIWSHSGV--QVK---------------EDKRHKFSIDKDGHSYFASLEIIDVT  180 (254)
Q Consensus       120 ~~~~~~~g~~~~l~C~~~~~~--~~~~~W~~~~~--~~~---------------~~~~~~~~~~~~~~~~~~~l~i~~~~  180 (254)
                      ....+.+|+.++|.|.+.+.+  .+.+.|+|++.  .+.               .....++....+.......|.|.+++
T Consensus        34 ~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~  113 (282)
T 1qok_A           34 GAELVRSGTSVKLSCTASGFNIKDSYMHWLRQGPEQGLEWIGWIDPENGDTEYAPKFQGKATFTTDTSSNTAYLQLSSLT  113 (282)
T ss_dssp             CCEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCEEEeCCCeEEEEEeccCCCCCCceEEEEEeCCCCCcEEEEEEecCCCccccCchhcCcEEEEEecCCCeEEEEECcCC
Confidence            456778999999999998775  57899999641  110               00011222221111112479999999


Q ss_pred             CCCceeEEEEEEcCCCc-----ceEEEEEEEecCCCC-----CCCCCCCCeeecCCccccccCCCCcEEEEEEEeccCCC
Q psy7036         181 IEDAGKYKVTAKNELGE-----SNATISLNFDSDDAP-----VPGEGTKPVFTERPVTKQSDDDLNDIVIECRLVGEPEP  250 (254)
Q Consensus       181 ~~d~G~y~C~~~~~~~~-----~~~~~~~~v~~~~~~-----~~~~~~~p~~~~~~~~~~~~~g~~~~~l~C~~~~~p~p  250 (254)
                      .+|+|.|.|.+.|..|.     ......|.|...+..     .+....++.+...|....+.+|+ .++|.|.+.+.| +
T Consensus       114 ~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~-~v~L~C~~~~~~-~  191 (282)
T 1qok_A          114 SEDTAVYYCNEGTPTGPYYFDYWGQGTTVTVSSGGGGSGGGGSGGGGSENVLTQSPAIMSASPGE-KVTITCSASSSV-S  191 (282)
T ss_dssp             GGGCEEEEEEEECSSSSCCCEEECCCEEEEEEC---------------CCCEEEECSEEEECTTC-CEEEEEEESSCC-S
T ss_pred             hhhCEEEEEEeccCCCccceeeeCCCEEEEEecCCcccCCccCCCCccceEEecCCCEEEEcCCC-cEEEEEEecCCC-c
Confidence            99999999999998651     112345666542210     00001234555566667788999 999999999998 8


Q ss_pred             ceeC
Q psy7036         251 TISW  254 (254)
Q Consensus       251 ~~~W  254 (254)
                      .+.|
T Consensus       192 ~v~W  195 (282)
T 1qok_A          192 YMHW  195 (282)
T ss_dssp             CCEE
T ss_pred             eEEE
Confidence            8888

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*

Probab=99.53  E-value=4.3e-14  Score=100.23  Aligned_cols=119  Identities=13%  Similarity=0.066  Sum_probs=80.1

Q ss_pred             CCeeeecCC--CeEEEEEEEeeCCCCeEEEEEC---CEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEc
Q psy7036         119 PSIRQEDDG--KRLLFECRIQADPAPTVIWSHS---GVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKN  193 (254)
Q Consensus       119 ~~~~~~~~g--~~~~l~C~~~~~~~~~~~W~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~  193 (254)
                      +..+.+.+|  +.+.|.|.+.+ |.+.+.|+++   +..+....  .+....+.     .|.|.+++.+|+|.|+|.|.|
T Consensus        14 p~~v~v~eG~~~~v~L~C~~~~-p~~~v~w~~~~~~g~~~~~~~--~~~~~~~~-----~l~I~~v~~~D~G~Y~C~a~n   85 (213)
T 2x1w_L           14 HGVVYITENKNKTVVIPCLGSI-SNLNVSLCARYPEKRFVPDGN--RISWDSKK-----GFTIPSYMISYAGMVFCEAKI   85 (213)
T ss_dssp             CEEEEECCSTTCEEEECCCBSS-TTCCEEEEEETTTEEECCCSS--SCEEETTT-----EEEEEGGGTTTCSEEEEEEC-
T ss_pred             ceEEEEecCCCccEEEeeccCC-CCcEEEEEhhcCCCccccCCC--cccccCCc-----cEEEccCChhcCceEEEEEEE
Confidence            356778899  99999999865 7789999884   55554332  22223333     699999999999999999998


Q ss_pred             CCCcce-EEEEEEEecCCCCCCCCCCCCeeec-CCccccccCCCCcEEEEEEEeccCC--CceeC
Q psy7036         194 ELGESN-ATISLNFDSDDAPVPGEGTKPVFTE-RPVTKQSDDDLNDIVIECRLVGEPE--PTISW  254 (254)
Q Consensus       194 ~~~~~~-~~~~~~v~~~~~~~~~~~~~p~~~~-~~~~~~~~~g~~~~~l~C~~~~~p~--p~~~W  254 (254)
                      ..+... ..+.+.|..        ..+|.+.. .+....+.+|+ .+.|.|.+.|.|.  +.++|
T Consensus        86 ~~~~~~s~~~~l~v~~--------~~~p~~~~~~~~~~~v~~G~-~v~L~C~~~g~p~~~~~i~W  141 (213)
T 2x1w_L           86 NDESYQSIMYIVVVVG--------YRIYDVVLSPSHGIELSVGE-KLVLNCTARTELNVGIDFNW  141 (213)
T ss_dssp             ---CEECCCEEEEECB--------CCEEEEEEESCSCEEEETTC-CEEEEEEEEECTTBCCEEEE
T ss_pred             CCeeEEEEEEEEEEeC--------CcccceEEcCCCCeEEcCCC-CEEEEEEEECCCCCceEEEE
Confidence            544332 225555532        11333433 33444788999 9999999998654  46888

>2fbj_H IGA-kappa J539 FAB (heavy chain); immunoglobulin; HET: NAG FUC; 1.95A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mcp_H 2mcp_H*

Probab=99.53  E-value=2.4e-13  Score=96.88  Aligned_cols=126  Identities=15%  Similarity=0.225  Sum_probs=82.4

Q ss_pred             eeeecCCCeEEEEEEEeeCC--CCeEEEEECC--Ee---cc-c-----------CCcceEEEcCCCCceeeEEEEccCCC
Q psy7036         121 IRQEDDGKRLLFECRIQADP--APTVIWSHSG--VQ---VK-E-----------DKRHKFSIDKDGHSYFASLEIIDVTI  181 (254)
Q Consensus       121 ~~~~~~g~~~~l~C~~~~~~--~~~~~W~~~~--~~---~~-~-----------~~~~~~~~~~~~~~~~~~l~i~~~~~  181 (254)
                      ...+.+|+.++|.|.+.+.+  .+.+.|+|..  ..   +. .           ....++....+.......|.|.+++.
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~   88 (220)
T 2fbj_H            9 GGLVQPGGSLKLSCAASGFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDNAKNSLYLQMSKVRS   88 (220)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECSSSCEEEEEECSCCG
T ss_pred             CeEecCCCcEEEEEEecCccCCCceEEEEEECCCCCeEEEEEEccCCCceecCCccCCcEEEEeeCCCCEEEEEECCCCh
Confidence            46678899999999998765  5689999853  11   10 0           01122322222111234899999999


Q ss_pred             CCceeEEEEEEcCCCc---ceEEEEEEEecCCCCCCCCCCCCeeecCCccccccCCCCcEEEEEEEecc-CC--CceeC
Q psy7036         182 EDAGKYKVTAKNELGE---SNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLVGE-PE--PTISW  254 (254)
Q Consensus       182 ~d~G~y~C~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~l~C~~~~~-p~--p~~~W  254 (254)
                      +|+|.|.|.+.+..+.   ......|.|....      ..+|.+...+ ...+..|+ .+.|.|.+.+. |.  +.++|
T Consensus        89 ~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~~------~~~P~v~~~~-~~~~~~g~-~v~L~C~~~g~~P~~~~~v~W  159 (220)
T 2fbj_H           89 EDTALYYCARLHYYGYNAYWGQGTLVTVSAES------ARNPTIYPLT-LPPALSSD-PVIIGCLIHDYFPSGTMNVTW  159 (220)
T ss_dssp             GGCEEEEEEEEETTTEEEEECCCEEEEECSSC------CBCCEEEEEC-CCSSSCCS-SEEEEEEEEEEBSCCCEEEEE
T ss_pred             hhCEEEEEEEeccccccceecCCEEEEecCCC------CCCCEEEEee-cccccCCC-cEEEEEEEEeEECCCcEEEEE
Confidence            9999999999987542   2223456665321      1245555444 33456788 99999999987 76  68888

>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens} PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E

Probab=99.53  E-value=5.1e-14  Score=102.07  Aligned_cols=131  Identities=19%  Similarity=0.276  Sum_probs=83.2

Q ss_pred             CCCeeeecCCCeEEEEEEEeeCCCCeEEEEEC----------------CEecccC-CcceEEEcCCCCceeeEEEEccCC
Q psy7036         118 KPSIRQEDDGKRLLFECRIQADPAPTVIWSHS----------------GVQVKED-KRHKFSIDKDGHSYFASLEIIDVT  180 (254)
Q Consensus       118 ~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~----------------~~~~~~~-~~~~~~~~~~~~~~~~~l~i~~~~  180 (254)
                      .+..+.+.+|+.+.|.|.+.+.+.+.+.|+|.                +...... ...++....+. ...+.|.|.+++
T Consensus         7 ~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~-~~~~~L~I~~v~   85 (246)
T 4dzb_B            7 HPSWVISKSGTSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHAS-LTLSTLTVTSAH   85 (246)
T ss_dssp             ECSEEEEETTSCEEEEEEESSSCCCSEEEEEECTTSCCEEEEEECTTSCCEECTTCCGGGEEEEEEE-TTEEEEEECSCC
T ss_pred             CCcEEEEeCCCcEEEEeEecCCCceEEEEEEECCCCCcEEEEEEccCCCceecCcccCCcEEEEecC-CCEEEEEECCCC
Confidence            34556788999999999999888889999982                2111111 00122221110 112479999999


Q ss_pred             CCCceeEEEEEEcCCC----cceEEEEEEEecCCCCCCCCCCCCeee-cCCccccccCCCCcEEEEEEEeccCCC--cee
Q psy7036         181 IEDAGKYKVTAKNELG----ESNATISLNFDSDDAPVPGEGTKPVFT-ERPVTKQSDDDLNDIVIECRLVGEPEP--TIS  253 (254)
Q Consensus       181 ~~d~G~y~C~~~~~~~----~~~~~~~~~v~~~~~~~~~~~~~p~~~-~~~~~~~~~~g~~~~~l~C~~~~~p~p--~~~  253 (254)
                      .+|+|.|.|.+.+..+    .......+.|.....    ...+|.+. ..+....+.+|+ .+.|.|.+.|.|++  .++
T Consensus        86 ~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~----~~~~P~i~~~~~~~~~~~~g~-~v~L~C~~~g~~p~~~~v~  160 (246)
T 4dzb_B           86 PEDSSFYICSARTSGDFGEQFFGPGTRLTVLEDLK----NVFPPEVAVFEPSEAEISHTQ-KATLVCLATGFYPDHVELS  160 (246)
T ss_dssp             GGGCEEEEEEECCSSGGGCCEECCCEEEEEESCGG----GCBCCEEEEECCCHHHHHHHS-EEEEEEEEEEEBSSCEEEE
T ss_pred             HHHCEEEEEEEecCCCCcceEEcCCEEEEEecCCC----cccCCceEeecCCchhccCCC-cEEEEEEEccCcCCceEEE
Confidence            9999999999987643    122334555553110    11244443 344544566688 99999999997664  788


Q ss_pred             C
Q psy7036         254 W  254 (254)
Q Consensus       254 W  254 (254)
                      |
T Consensus       161 W  161 (246)
T 4dzb_B          161 W  161 (246)
T ss_dssp             E
T ss_pred             E
Confidence            8

>4f9l_D 20.1 anti-BTN3A1 antibody fragment; B7 superfamily, butyrophilin, CD277, immune system; HET: NAG; 3.14A {Mus musculus}

Probab=99.53  E-value=5.8e-13  Score=93.46  Aligned_cols=180  Identities=15%  Similarity=0.242  Sum_probs=101.8

Q ss_pred             eeEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeC--CE---Ee-e------eCCcceEEEeecCCcceEEEEEEeccC
Q psy7036          10 SFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRG--ET---QL-S------EDTRTVMKTTPIGTNKYLVALELDDVI   77 (254)
Q Consensus        10 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~--~~---~~-~------~~~~~~~~~~~~~~~~~~~~l~i~~~~   77 (254)
                      .+++.|..+.+.+|+.|+|+|.+...-...+.||+.  |+   .+ .      ..-..++.....+   ...+|.|.+++
T Consensus         3 vlTQsP~sls~s~G~~vtisC~~S~~i~~y~~WyqQ~pG~~P~lLiy~~s~~~sGvp~RFSgS~Sg---t~ftLtIs~lq   79 (259)
T 4f9l_D            3 VLTQSPSSLSASLGDTITITCHASQNINLWLSWYQQRPGNIPKLLIYRASNLHTGVPSRFSGSGSA---TGFTLTISSLQ   79 (259)
T ss_dssp             CEEEECSBCCBCTTCEEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEET---TEEEEEEESCC
T ss_pred             CEEccCCeEEECCCCCEEEEEEcCCCCCCCEEEEEECCCCCCEEEEECCCccCCCCCCCEEeeccC---CeEEEEEcccC
Confidence            356778888999999999999986444445899962  32   11 1      1111122211111   13479999999


Q ss_pred             CCCCeEEEEEEEcCCCc-eEEEEEEEEecccc----CCCCCcc------------ccCCCeeeecCCCeEEEEEEEeeCC
Q psy7036          78 ETDAGLYKVKAKNKMGE-VAASINLNFSREQI----DGLAPTF------------LKKPSIRQEDDGKRLLFECRIQADP  140 (254)
Q Consensus        78 ~~d~G~Y~C~~~~~~~~-~~~~~~l~v~~~~~----~~~~~~~------------~~~~~~~~~~~g~~~~l~C~~~~~~  140 (254)
                      .+|++.|.|........ --....|.|.+..-    ...++..            +.......+.+|..+.|.|.+.|+.
T Consensus        80 ~eD~A~YyC~~~~~~~~tFG~GTkLeikr~~aa~~~s~~~~s~~a~ssGv~sqvqL~eSG~~lvkPG~Sl~LSC~aSG~t  159 (259)
T 4f9l_D           80 PEDIATYYCQQGHSYPYTFGGGTKLDIKRADAGGGGSGGGGSGGGGSGGGGSQVQLQESGAELVKPGASVKLSCKASGYT  159 (259)
T ss_dssp             GGGCEEEEEEECSSSSCCBCCCCEECBCCC----------------------CCCEEEECCCEEESSSCEEEEEEEESSC
T ss_pred             hhhCEEEEEeecCCCCCCccCCeEEEEeccccCccccccccccccccCCccccceEEeECCCEECCCCcEEEEEeeeCCC
Confidence            99999999987643211 01122333332100    0001100            1111123467899999999998864


Q ss_pred             C--CeEEEEEC--CEe------cc---------cCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEE
Q psy7036         141 A--PTVIWSHS--GVQ------VK---------EDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAK  192 (254)
Q Consensus       141 ~--~~~~W~~~--~~~------~~---------~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~  192 (254)
                      -  -.+.|.|.  |+.      +.         ..-+.++.+..+.......|.+.+++.+|.+.|.|...
T Consensus       160 fs~y~~~WvRQaPGkgLEwvg~I~~~~g~t~Ya~svkGRfTISrD~s~nt~yLqm~sL~~eDTAvYYCAr~  230 (259)
T 4f9l_D          160 FTRYYLYWVKQRPGQGLEWIGEINPNNGGTKFNEKFKSKATLTVDKSSRTTYIQLSSLTSEDSAVYYCSRE  230 (259)
T ss_dssp             GGGSCEEEEEECTTSCEEEEEEECTTTCCEEECTTSTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             cccCcEEEEEECCCCceEEEeEEeCCCCceEecHhhcCCEEEEEEccccEEEEEECCCChHHCEEEEEEEe
Confidence            3  24778763  111      11         11122333333333334579999999999999999654

>3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A

Probab=99.53  E-value=6.4e-14  Score=102.02  Aligned_cols=135  Identities=16%  Similarity=0.209  Sum_probs=86.2

Q ss_pred             CCeeeecCCCeEEEEEEEeeCC--CCeEEEEEC--CEecc---------------cCCcceEEEcCCCCceeeEEEEccC
Q psy7036         119 PSIRQEDDGKRLLFECRIQADP--APTVIWSHS--GVQVK---------------EDKRHKFSIDKDGHSYFASLEIIDV  179 (254)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~~--~~~~~W~~~--~~~~~---------------~~~~~~~~~~~~~~~~~~~l~i~~~  179 (254)
                      +..+.+.+|+.++|.|.+.+.+  .+.+.|+|.  +..+.               .....++....+.......|.|.++
T Consensus         8 p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v   87 (253)
T 3uzq_A            8 SGAELVKPGASVRLSCTASGFNIKDTYMSWVKQRPEQGLEWIGRIDPANGDTKYDPKFQGKATITADTSSNTAYLHLSSL   87 (253)
T ss_dssp             CCCEEECTTCCEEEEEEECSSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSC
T ss_pred             CCCeeecCCCcEEEEEEeeCCcccCceEEEEEeCCCCCCEEEEEEccCCCcceeCCcCCCcEEEEeecCCCeEEEEeCCC
Confidence            3456788999999999988754  678999983  11110               0001122222212112346999999


Q ss_pred             CCCCceeEEEEEEcCCCcc-eEEEEEEEecCCCCC-----CCCCCCCeeecCCccccccCCCCcEEEEEEEeccCCC---
Q psy7036         180 TIEDAGKYKVTAKNELGES-NATISLNFDSDDAPV-----PGEGTKPVFTERPVTKQSDDDLNDIVIECRLVGEPEP---  250 (254)
Q Consensus       180 ~~~d~G~y~C~~~~~~~~~-~~~~~~~v~~~~~~~-----~~~~~~p~~~~~~~~~~~~~g~~~~~l~C~~~~~p~p---  250 (254)
                      +.+|+|.|.|.+.|..+.. .....+.|.......     .....+|.+...|....+.+|+ .+.|.|.+.+.|.+   
T Consensus        88 ~~~DsG~Y~C~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~-~v~L~C~~~~~~~~~~~  166 (253)
T 3uzq_A           88 TSGDTAVYYCSRGWEGFAYWGQGTLVTVSAGGGGSGGGGSGGGGSELVMTQTPASLAVSLGQ-RATISCRASENVDRYGN  166 (253)
T ss_dssp             CGGGCEEEEEEECSSSCCEECCCEEEEECSSSCCCCC---------CCEEEECSEEEECTTS-CEEEEEEESSCCEETTE
T ss_pred             CcccCEEEEEEEeeCCccEECCCcEEEEecCCccccccccCCCcccceEECcCCeEEEeCCC-CEEEEEEecCccccCCC
Confidence            9999999999999865543 344556665320000     0011245666667777889999 99999999998876   


Q ss_pred             -ceeC
Q psy7036         251 -TISW  254 (254)
Q Consensus       251 -~~~W  254 (254)
                       .+.|
T Consensus       167 ~~v~W  171 (253)
T 3uzq_A          167 SFMHW  171 (253)
T ss_dssp             ECEEE
T ss_pred             cEEEE
Confidence             7888

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A*

Probab=99.53  E-value=4.2e-14  Score=99.28  Aligned_cols=119  Identities=18%  Similarity=0.278  Sum_probs=80.2

Q ss_pred             eeeecCCCeEEEEEEEee----CCCCeEEEEECCEecccCC----------cceEEEcCCCCceeeEEEEccCCCCCcee
Q psy7036         121 IRQEDDGKRLLFECRIQA----DPAPTVIWSHSGVQVKEDK----------RHKFSIDKDGHSYFASLEIIDVTIEDAGK  186 (254)
Q Consensus       121 ~~~~~~g~~~~l~C~~~~----~~~~~~~W~~~~~~~~~~~----------~~~~~~~~~~~~~~~~l~i~~~~~~d~G~  186 (254)
                      .+.+..|+.+.|.|.+.+    .+.+.+.|++++..+....          ..+......+.   ..|.|.+++.+|+|.
T Consensus         3 ~v~v~~G~~v~L~C~~~~~~~~~~~~~~~W~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~---~~L~I~~v~~~D~G~   79 (201)
T 1dr9_A            3 HVTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNN---LSIVILALRPSDEGT   79 (201)
T ss_dssp             EEEEETTSCEEECCSCCCCTTHHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEEESTTT---TEEEECSCCGGGCEE
T ss_pred             eEEEEeCCCEEEecccCCCcccccccEEEEEeCCcEEEEEeCCceeecCcccceeEEccCCC---cEEEEecccchhCeE
Confidence            356778999999999853    3567899999987763110          01111111111   279999999999999


Q ss_pred             EEEEEEcCCCcc-----eEEEEEEEecCCCCCCCCCCCCeeecCCccccccCCCCcEEEEEEEe-ccCCCceeC
Q psy7036         187 YKVTAKNELGES-----NATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLV-GEPEPTISW  254 (254)
Q Consensus       187 y~C~~~~~~~~~-----~~~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~l~C~~~-~~p~p~~~W  254 (254)
                      |+|.+.|..|..     ...+.|.|....       ..|.+....    ...|+ .+.|.|.+. |+|.|.++|
T Consensus        80 Y~C~~~~~~g~~~~~~~~~~~~l~V~~~~-------~~p~~~~~~----~~~g~-~~~l~C~~~~g~P~p~i~W  141 (201)
T 1dr9_A           80 YECVVLKYEKDAFKREHLAEVTLSVKADF-------PTPSISDFE----IPTSN-IRRIICSTSGGFPEPHLSW  141 (201)
T ss_dssp             EEEEEEECCTTSCEEEEEEEEEEEEECCC-------CCCEEEEEE----CSSTT-EEEEEEEEEEESSCEEEEE
T ss_pred             EEEEEEcCCCCccccccccEEEEEEcCCC-------CCCceEecc----CCCCC-eEEEEEecCCccCCCEEEE
Confidence            999999987654     345666665421       134433211    13466 899999995 999999999

>1c5d_H Monoclonal antibody against the main immunogenic the human muscle acetylcholine receptor...; immunoglobulin, immune system; 2.40A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 2arj_H 3b9k_H* 2gk0_H 2gjz_H 1fn4_B 3mj8_H 3mj9_H*

Probab=99.53  E-value=2.2e-13  Score=96.71  Aligned_cols=127  Identities=18%  Similarity=0.294  Sum_probs=80.9

Q ss_pred             eeeecCCCeEEEEEEEeeCC--CCeEEEEECC--Eec----cc----------CCcceEEEcCCCCceeeEEEEccCCCC
Q psy7036         121 IRQEDDGKRLLFECRIQADP--APTVIWSHSG--VQV----KE----------DKRHKFSIDKDGHSYFASLEIIDVTIE  182 (254)
Q Consensus       121 ~~~~~~g~~~~l~C~~~~~~--~~~~~W~~~~--~~~----~~----------~~~~~~~~~~~~~~~~~~l~i~~~~~~  182 (254)
                      ...+.+|+.+.|.|.+.+.+  .+.+.|+|+.  ...    ..          ....++....+.....+.|.|.+++.+
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~   88 (215)
T 1c5d_H            9 PGLVQPSQTLSLTCTVSGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTSKSQVFLKMNSLQTE   88 (215)
T ss_dssp             CCEECTTCCEEEEEEECSSCTTSCCEEEEEECTTSCCEEEEEECTTCCEECCTTTGGGEEEEEETTTTEEEEEESSCCGG
T ss_pred             CeeecCCCcEEEEEEECCCcCCCCeEEEEEECCCCCcEEEEEEcCCCCcEECCcccCcEEEEeeCCCceEEEEECCCCcc
Confidence            45677899999999998764  4689999863  111    00          011222222111112248999999999


Q ss_pred             CceeEEEEEEcCCCc---ceEEEEEEEecCCCCCCCCCCCCeeecCCccccccCCCCcEEEEEEEecc-CCC-ceeC
Q psy7036         183 DAGKYKVTAKNELGE---SNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLVGE-PEP-TISW  254 (254)
Q Consensus       183 d~G~y~C~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~l~C~~~~~-p~p-~~~W  254 (254)
                      |+|.|.|.+.+..+.   ......|.|....      ..+|.+...+....+.+|+ .+.|.|.+.|. |.| .++|
T Consensus        89 D~G~Y~C~~~~~~~~~~~~~~~~~L~V~~~~------~~~P~i~~~~~~~~~~~g~-~v~L~C~~~g~~P~p~~v~W  158 (215)
T 1c5d_H           89 DTAIYFCTREDGWNYFDYWGPGTMVTVSSAQ------TTAPSVYPLAPGCGDTTSS-TVTLGCLVKGYFPEPVTVTW  158 (215)
T ss_dssp             GCEEEEEEECCSSSCSCCBCCCEEEEECSSC------CBCCCEEEECCCSSCCCCS-SEEEEEEEEEEBSSCCEEEE
T ss_pred             cCEEEEEEEecCCcccceEcCCEEEEecCCC------CCCCeEEeccCChhhccCC-cEEEEEEEeeeEcCCcEEEE
Confidence            999999999986421   2233456665311      1244444332223456788 99999999987 888 8998

>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens}

Probab=99.53  E-value=2.7e-14  Score=104.37  Aligned_cols=136  Identities=10%  Similarity=0.076  Sum_probs=80.3

Q ss_pred             ccCCCeeeecCCCeEEEEEEEeeCCCCeEEEEECC--Ee---cc-cC-------------CcceEEEcCCCCceeeEEEE
Q psy7036         116 LKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSG--VQ---VK-ED-------------KRHKFSIDKDGHSYFASLEI  176 (254)
Q Consensus       116 ~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~--~~---~~-~~-------------~~~~~~~~~~~~~~~~~l~i  176 (254)
                      ...+..+.+.+|+.++|.|.+.+.+.+.+.|+|..  ..   +. ..             .+.....  +.......|.|
T Consensus         6 ~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~~~L~I   83 (259)
T 3omz_A            6 EGRTKSVIRQTGSSAEITCDLAEGSTGYIHWYLHQEGKAPQRLLYYDSYTSSVVLESGISPGKYDTY--GSTRKNLRMIL   83 (259)
T ss_dssp             -----CEEEETTCCEEEECCC-----CEEEEEEECTTSCCEEEEEEETTTCCEEECTTCCBTTEEEE--CC--CCCEEEE
T ss_pred             ccCCceeEecCCCcEEEEEEEccCCCcEEEEEEECCCCCcEEEEEEecCcCccccCCCCCcceeEee--cCCCCeEEEEE
Confidence            34445677889999999999988888899999831  11   00 00             0111111  11111237999


Q ss_pred             ccCCCCCceeEEEEEEcCCC---cceEEEEEEEecCCCCCC-------CCCCCCeeecCCccccccCCCCcEEEEEEEec
Q psy7036         177 IDVTIEDAGKYKVTAKNELG---ESNATISLNFDSDDAPVP-------GEGTKPVFTERPVTKQSDDDLNDIVIECRLVG  246 (254)
Q Consensus       177 ~~~~~~d~G~y~C~~~~~~~---~~~~~~~~~v~~~~~~~~-------~~~~~p~~~~~~~~~~~~~g~~~~~l~C~~~~  246 (254)
                      .+++.+|+|.|.|.+.+..+   .......|.|........       .....|.+...|....+.+|+ .++|.|.+.+
T Consensus        84 ~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~-~v~L~C~~~~  162 (259)
T 3omz_A           84 RNLIENDSGVYYCATWDQNYYKKLFGSGTSLVVTDKQGSADDAKKDAAKKDGAQKVTQAQSSVSMPVRK-AVTLNCLYET  162 (259)
T ss_dssp             SSCCGGGCEEEEEEEECTTSSCEEECCCEEEEEEC------------------CEEECCCCCEEEETTC-CEEECCEEEC
T ss_pred             CCCCcccCEEEEEEEeeCCccccEECCCCEEEEecCCCCccccccccccccCCeeeEEeCCEEEEcCCC-CEEEEEECCC
Confidence            99999999999999998765   233345566654211110       001145677777777888999 9999999987


Q ss_pred             c-CCCceeC
Q psy7036         247 E-PEPTISW  254 (254)
Q Consensus       247 ~-p~p~~~W  254 (254)
                      . |.+.+.|
T Consensus       163 ~~~~~~v~W  171 (259)
T 3omz_A          163 SWWSYYIFW  171 (259)
T ss_dssp             CCSSCEEEE
T ss_pred             ccCCceEEE
Confidence            5 7788888

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...

Probab=99.53  E-value=1.3e-14  Score=100.44  Aligned_cols=115  Identities=11%  Similarity=0.145  Sum_probs=79.0

Q ss_pred             eeeecCCCeEEEEEEEeeCCCCeEEEEECCEeccc--CC----------cceEEEcCC-CCceeeEEEEccCCCCCceeE
Q psy7036         121 IRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKE--DK----------RHKFSIDKD-GHSYFASLEIIDVTIEDAGKY  187 (254)
Q Consensus       121 ~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~--~~----------~~~~~~~~~-~~~~~~~l~i~~~~~~d~G~y  187 (254)
                      .+.+.+|+.+.|.|.+.+.+.+.+.|++++..+..  ..          ..++..... .......|.|.+++.+|+|.|
T Consensus         4 ~v~~~~G~~v~L~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~i~~v~~~D~G~Y   83 (184)
T 2ny1_B            4 VVLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTY   83 (184)
T ss_dssp             EEEEETTSCEEECCBCSSSSCCCEEEEETTCCEEEEEETTEEEECSCTTGGGEECCGGGGGGTBCCEEECSCCGGGCEEE
T ss_pred             cEEEeCCCCEEEEEEEcCCCceEEEEEeCCccceEEecCceEecCChhhCCccccccccccCCeEEEEEecCCHHHCEEE
Confidence            45677899999999998888899999998753111  00          111111110 000123699999999999999


Q ss_pred             EEEEEcCCCcceEEEEEEEecCCCCCCCCCCCCeeecCCccccccCCCCcEEEEEEEeccCCCceeC
Q psy7036         188 KVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLVGEPEPTISW  254 (254)
Q Consensus       188 ~C~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~l~C~~~~~p~p~~~W  254 (254)
                      +|.+.|..+    .+.+.|..             +.. +....+.+|+ .+.|.|.+.+.|.|.++|
T Consensus        84 ~C~~~~~~~----~~~l~V~~-------------~~~-~~~~~v~~g~-~~~l~C~~~~~p~~~v~W  131 (184)
T 2ny1_B           84 ICEVEDQKE----EVQLLVFG-------------LTA-NSDTHLLQGQ-SLTLTLESPPGSSPSVQC  131 (184)
T ss_dssp             EEEETTEEE----EEEEEEEE-------------EEE-SSCSEEETTC-CEEEEEECCTTCCCEEEE
T ss_pred             EEEEEcCCC----cEEEEEEE-------------ecC-CCCceeecCC-CEEEEEEcCCCCCCEEEE
Confidence            999987644    34454442             112 2233567888 999999999999999998

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.53  E-value=1.5e-13  Score=85.62  Aligned_cols=90  Identities=21%  Similarity=0.342  Sum_probs=67.0

Q ss_pred             CCccccCCCeeeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEE
Q psy7036         112 APTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTA  191 (254)
Q Consensus       112 ~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~  191 (254)
                      |+.+...+....+.+|+.+.|.|.+.+ +.+.+.|+|++..+......++....++.  ...|.|.+++.+|+|.|+|.+
T Consensus         7 p~~~~~~~~~~~v~~G~~v~l~C~~~~-~~~~v~W~k~g~~l~~~~~~~~~~~~~~~--~~~L~I~~~~~~D~G~Y~C~a   83 (103)
T 1x44_A            7 GIMVTKQLEDTTAYCGERVELECEVSE-DDANVKWFKNGEEIIPGPKSRYRIRVEGK--KHILIIEGATKADAAEYSVMT   83 (103)
T ss_dssp             SCCCSBCCCCEEEETTEEEEEEEECSS-SSCCCEEEETTEECCCSTTCSEEEEEETT--EEEEEEEEECTTTCSEEEEEE
T ss_pred             CceeeccCCCEEEECCCCEEEEEEecC-CCCeEEEEECCEECCCCCceEEEEEEcCC--EEEEEECCCCcccCEEEEEEE
Confidence            344566666778889999999999976 67899999999998766532222222221  137999999999999999999


Q ss_pred             EcCCCcceEEEEEEEec
Q psy7036         192 KNELGESNATISLNFDS  208 (254)
Q Consensus       192 ~~~~~~~~~~~~~~v~~  208 (254)
                      .|    ...+..|.|..
T Consensus        84 ~n----~~~~~~l~V~~   96 (103)
T 1x44_A           84 TG----GQSSAKLSVDL   96 (103)
T ss_dssp             TT----EEEEEEEEEEC
T ss_pred             CC----CcEEEEEEEeC
Confidence            77    46666777765

>3bae_H WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} SCOP: b.1.1.2 PDB: 3bkc_H 3bkj_H 3bkm_H 3mck_H 2r0w_H* 2iqa_H 2iq9_H 1ggi_H 1ggb_H 1ggc_H 3eys_H* 2ipt_H 2ipu_H 3eyu_H* 2r0z_H* 3rkd_H 1r0a_H* 1n5y_H* 1n6q_H* 1t03_H* ...

Probab=99.53  E-value=2e-13  Score=97.80  Aligned_cols=127  Identities=18%  Similarity=0.298  Sum_probs=79.3

Q ss_pred             eeeecCCCeEEEEEEEeeCCC----CeEEEEECC--Eec----cc----------CCcceEEEcCCCCceeeEEEEccCC
Q psy7036         121 IRQEDDGKRLLFECRIQADPA----PTVIWSHSG--VQV----KE----------DKRHKFSIDKDGHSYFASLEIIDVT  180 (254)
Q Consensus       121 ~~~~~~g~~~~l~C~~~~~~~----~~~~W~~~~--~~~----~~----------~~~~~~~~~~~~~~~~~~l~i~~~~  180 (254)
                      ...+.+|+.++|.|.+.+.+.    +.+.|+|+.  ..+    ..          ....++....+.......|.|.+++
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~   88 (228)
T 3bae_H            9 PGLLKPSQTLSLTCSFSGFSIRTSKVGVSWIRQPSGKGLEWLAHIYWDDDKRYNPSLESRLTISKDTSRDMVFMKITSVD   88 (228)
T ss_dssp             CSEECTTCCEEEEEEEESSCHHHHCCEEEEEEEETTCCCEEEEEECTTSCEEECTTTGGGEEEEEETTTTEEEEEECSCC
T ss_pred             ceeecCCCeEEEEEEEeCcccCCCceeEEEEEECCCCCeEEEEEEecCCceeeCcccCCcEEEEEcCCCCeEEEEEcCCC
Confidence            356778999999999988764    789999852  211    00          0111222221111112489999999


Q ss_pred             CCCceeEEEEEEcCCC------c---ceEEEEEEEecCCCCCCCCCCCCeeecCCccccccCCCCcEEEEEEEecc-CCC
Q psy7036         181 IEDAGKYKVTAKNELG------E---SNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLVGE-PEP  250 (254)
Q Consensus       181 ~~d~G~y~C~~~~~~~------~---~~~~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~l~C~~~~~-p~p  250 (254)
                      .+|+|.|.|.+.+..+      .   ......|.|...      ...+|.+...+....+.+|+ .+.|.|.+.|. |.|
T Consensus        89 ~~D~G~Y~C~~~~~~g~~~~~~~~~~~~~~~~L~V~~~------~~~~P~i~~~~~~~~~~~g~-~~~l~C~~~g~~P~p  161 (228)
T 3bae_H           89 TADTATYYCARRGFYGRKYEVNHFDYWGQGTTLTVSSA------KTTAPSVYPLAPVCGDTTGS-SVTLGCLVKGYFPEP  161 (228)
T ss_dssp             GGGCEEEEEEEEEESTTCTTSEEEEEECCCEEEEECSC------CCBCCEEEEECC-----CCS-EEEEEEEEEEEBSSC
T ss_pred             cccCEEEEEEEecCCCccccccceeeeCCcEEEEecCC------CCCCCEEEEecccccccCCC-CEEEEEEEccEeCCC
Confidence            9999999999998764      1   112355666531      11245554333223456788 99999999986 877


Q ss_pred             -ceeC
Q psy7036         251 -TISW  254 (254)
Q Consensus       251 -~~~W  254 (254)
                       .++|
T Consensus       162 ~~v~W  166 (228)
T 3bae_H          162 VTLTW  166 (228)
T ss_dssp             CEEEE
T ss_pred             EEEEE
Confidence             8988

>1mju_H Immunoglobulin MS6-12; catalytic antibody, ester hydrolysis, esterolytic, FAB, immune system; 1.22A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mjj_B 1mie_H 1mj7_H* 1mj8_H 1mh5_B* 4aeh_H 2y5t_A 2vwe_E 2op4_H 2ntf_H 3loh_C 1e4x_H 2vl5_A 1e4x_I 1e4w_H 3opz_H 3oz9_H 1plg_H 1hi6_B 1cfn_B ...

Probab=99.52  E-value=2.2e-13  Score=97.51  Aligned_cols=129  Identities=16%  Similarity=0.264  Sum_probs=77.4

Q ss_pred             CCeeeecCCCeEEEEEEEeeCC--CCeEEEEECC--Eecc-----c--C--------CcceEEEcCCCCceeeEEEEccC
Q psy7036         119 PSIRQEDDGKRLLFECRIQADP--APTVIWSHSG--VQVK-----E--D--------KRHKFSIDKDGHSYFASLEIIDV  179 (254)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~~--~~~~~W~~~~--~~~~-----~--~--------~~~~~~~~~~~~~~~~~l~i~~~  179 (254)
                      +....+.+|+.++|.|.+.+.+  .+.+.|+|+.  ....     .  .        ...++....+.......|.|.++
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v   86 (227)
T 1mju_H            7 PGAELVKPGASVKLSCKASGYTFTNYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDTSSSTAYMQLSSL   86 (227)
T ss_dssp             CSEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSC
T ss_pred             CCCeEEcCCCCEEEEEEecCCccccceEEEEEeCCCCCcEEEEEEeccCCceeeCCccCCcEEEEEeCCCCeEEEEECCC
Confidence            3456788999999999998876  6789999863  2110     0  0        01122221111111248999999


Q ss_pred             CCCCceeEEEEEEcCCCc-ceEEEEEEEecCCCCCCCCCCCCeeecCCccccccCCCCcEEEEEEEecc-CCC-ceeC
Q psy7036         180 TIEDAGKYKVTAKNELGE-SNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLVGE-PEP-TISW  254 (254)
Q Consensus       180 ~~~d~G~y~C~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~l~C~~~~~-p~p-~~~W  254 (254)
                      +.+|+|.|.|.+.+..+. ......|.|....      ..+|.+...+....+.+|+ .+.|.|.+.|. |.| .++|
T Consensus        87 ~~~D~G~Y~C~~~~~~~~~~~~~~~L~V~~~~------~~~P~v~~~~~~~~~~~g~-~v~L~C~~~g~~P~p~~v~W  157 (227)
T 1mju_H           87 TSDDSAVYYCANKLGWFPYWGQGTLVTVSAAK------TTAPSVYPLAPVCGDTSGS-SVTLGCLVKGYFPEPVTLTW  157 (227)
T ss_dssp             CGGGCEEEEEEEEETTEEEECCCEEEEECSSC------CBCCEEEEECCCC-------CEEEEEEEEEEBSSCCEEEE
T ss_pred             CcccCEEEEEEECCCCceEEcCcEEEEEcCCC------CCCCEEEEecCCccccCCC-cEEEEEEeecEeCCCeEEEE
Confidence            999999999999986421 1223456665311      1234444322223456788 99999999986 777 8988

>1l6x_A Immunoglobulin gamma-1 heavy chain constant regio; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2iwg_A* 3v7m_A* 3d6g_A* 3agv_A* 1oqo_A* 1oqx_A* 3v95_A* 2wah_A* 3sgj_A* 3sgk_A* 2dtq_A* 2dts_A* 3ave_A* 3ay4_A* 3do3_A* 2gj7_A* 1t83_A* 1t89_A* 1dn2_A* 3dnk_A ...

Probab=99.52  E-value=4.8e-14  Score=99.49  Aligned_cols=123  Identities=14%  Similarity=0.253  Sum_probs=74.6

Q ss_pred             cCCCeEEEEEEEeeCC----CCeEEEEECCEecccCCcceEEEcCCCC-ceeeEEEEccCCCCCceeEEEEEEcCCCcce
Q psy7036         125 DDGKRLLFECRIQADP----APTVIWSHSGVQVKEDKRHKFSIDKDGH-SYFASLEIIDVTIEDAGKYKVTAKNELGESN  199 (254)
Q Consensus       125 ~~g~~~~l~C~~~~~~----~~~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~  199 (254)
                      ..|+.+.|.|.+.+.+    ...+.|+|++..+............++. ...+.|.|.....+|.|.|+|.|.|..+...
T Consensus        16 ~~G~~v~L~C~~~g~~p~~~~~~v~W~k~~~~~~~~~~~~~~~~~~g~~~~~~~l~i~~~d~~d~g~Y~C~a~n~~~~~~   95 (207)
T 1l6x_A           16 MISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAP   95 (207)
T ss_dssp             CTTSCCEEEEEEEEECSSSCCCEEEEEETTEEECCCEECCCEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECTTSSSC
T ss_pred             ecCCceEEEEEEecccCCCCCeEEEEEECCccccCcccCCceeccCCcEEEEEEEEEEHHHccCCceEEEEEEcCcCCcc
Confidence            6899999999998865    2489999999876533211111222232 1223344444444559999999999877653


Q ss_pred             EEEEEEEecCCCCCCCCCCCCeeecCCccccccCCCCcEEEEEEEecc-CCC-ceeC
Q psy7036         200 ATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLVGE-PEP-TISW  254 (254)
Q Consensus       200 ~~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~l~C~~~~~-p~p-~~~W  254 (254)
                      ....+.+..      ....+|.+...+.......++ .+.|.|.+.|. |.+ .++|
T Consensus        96 ~~~~v~~~~------~~~~~P~v~~~~~~~~~~~~~-~~~L~C~~~g~~P~~~~v~W  145 (207)
T 1l6x_A           96 IEKTISKAK------GQPREPQVYTLPPSRDELTKN-QVSLTCLVKGFYPSDIAVEW  145 (207)
T ss_dssp             EEEEECCCC------SCCBCCEEEEECCCGGGGGSS-EEEEEEEEEEEBSSCCEEEE
T ss_pred             eEEEeccCC------CCCcCCEEEEECCChHHhcCC-cEEEEEEEeCeECCCeEEEE
Confidence            333332110      012245555443333345677 79999999985 543 7888

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A

Probab=99.52  E-value=2.6e-14  Score=99.16  Aligned_cols=112  Identities=18%  Similarity=0.345  Sum_probs=75.8

Q ss_pred             ecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEcc-CCCCCceeEEEEEEcCCCcceEEE
Q psy7036         124 EDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIID-VTIEDAGKYKVTAKNELGESNATI  202 (254)
Q Consensus       124 ~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~-~~~~d~G~y~C~~~~~~~~~~~~~  202 (254)
                      ...|+.+.|.|.+.+ +. .+.|+|++..+....        ++     .|.|.+ ++.+|+|.|+|.|.|..|.....+
T Consensus        11 ~~~G~~v~L~C~~~~-~~-~i~W~k~g~~l~~~~--------~~-----~L~I~~~~~~~D~G~Y~C~a~n~~g~~~~~~   75 (186)
T 1jbj_A           11 SISGTSVELTCPLDS-DE-NLKWEKNGQELPQKH--------DK-----HLVLQDFSEVEDSGYYVCYTPASNKNTYLYL   75 (186)
T ss_dssp             EEETTEEEEECSSCC-CT-TCEEEETTEEECSCC--------CS-----EEEEESCCTTTSCEEEEEECSSCCCCCCEEE
T ss_pred             EeCCcEEEEEEeCCC-CC-ceEEEECCEECCCCC--------CC-----EEEECCCCccccCEEEEEEEEeCCCcEEEEE
Confidence            356999999999877 43 499999998876431        12     799999 999999999999999988866666


Q ss_pred             EEEEecCCCCCCCC--------CCCCeeecC----Cc---cccccCCCCcEEEEEEEeccCCCceeC
Q psy7036         203 SLNFDSDDAPVPGE--------GTKPVFTER----PV---TKQSDDDLNDIVIECRLVGEPEPTISW  254 (254)
Q Consensus       203 ~~~v~~~~~~~~~~--------~~~p~~~~~----~~---~~~~~~g~~~~~l~C~~~~~p~p~~~W  254 (254)
                      .+.|....++....        ..+|.+...    ..   ...+.+|+ .+.|.|.+   |.|.++|
T Consensus        76 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~-~v~l~C~~---p~p~i~W  138 (186)
T 1jbj_A           76 KARVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGSRGDG-SVLLTCGL---TDKTIKW  138 (186)
T ss_dssp             CCCCCSCCCCCCCCCCCCCCSCCSSSTTCCSCCCCSSCCEECCCSSSC-EEEEECSS---SCSCEEE
T ss_pred             EEEEecccccccccccccccccCCccccccccccccccccceecCCCC-eEEEEeeC---CCCeEEE
Confidence            55554322221000        001111100    00   11334788 99999998   8889998

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A*

Probab=99.52  E-value=2.3e-14  Score=105.17  Aligned_cols=122  Identities=16%  Similarity=0.229  Sum_probs=81.7

Q ss_pred             cCCCeeeecCCCeEEEEEEEe---eCCCCeEEEEECCEecccCC----------------cceEEEcCCCCceeeEEEEc
Q psy7036         117 KKPSIRQEDDGKRLLFECRIQ---ADPAPTVIWSHSGVQVKEDK----------------RHKFSIDKDGHSYFASLEII  177 (254)
Q Consensus       117 ~~~~~~~~~~g~~~~l~C~~~---~~~~~~~~W~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~l~i~  177 (254)
                      ..+..+.+.+|+.+.|.|.+.   +.+.+.+.|++++.......                ..++....+.......|.|.
T Consensus        10 ~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~   89 (268)
T 3mj6_A           10 VSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQNRSHLVGDTFHNDGSLLLQ   89 (268)
T ss_dssp             --CCEEEEETTCCEEECCBCCCSSCCCEEEEEEEEESSSTTCCEEEEEEETTEEEECGGGTTTEEECSCTTTTBCCEEEC
T ss_pred             cCCCceEEecCCcEEEEEEeecCCCCceEEEEEEEeCCCCCceEEEEEEcCCCcccCccccCceEEeecCCCCEEEEEEC
Confidence            344567788999999999987   56677899999654321110                01122211111112479999


Q ss_pred             cCCCCCceeEEEEEEcCCCcc--eEEEEEEEecCCCCCCCCCCCCeeecCCccccccCCCCcEEEEEEE---eccCCCce
Q psy7036         178 DVTIEDAGKYKVTAKNELGES--NATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRL---VGEPEPTI  252 (254)
Q Consensus       178 ~~~~~d~G~y~C~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~l~C~~---~~~p~p~~  252 (254)
                      +++.+|+|.|+|.+.+..+..  ...+.|.|..               ..|....+.+|+ .+.|.|.+   .+.|.|.+
T Consensus        90 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~---------------~~p~~~~v~~G~-~v~L~C~~~~~~~~p~~~v  153 (268)
T 3mj6_A           90 DVQKADEGIYTCEIRLKNESMVMKKPVELWVLP---------------EEPRDLRVRVGD-TTQMRCSIQSTEEKRVTKV  153 (268)
T ss_dssp             SCCGGGCEEEEEEEEETTCCCEEEEEEEEEEEC---------------CCCSEEEEETTC-CEEECCBCEESSSSCCCEE
T ss_pred             CCCHhHCEEEEEEEEecCCcceEEEEEEEEEec---------------cCCCccccccCC-cEEEEEEecCCCCCCccce
Confidence            999999999999999876554  3444554431               123355677888 99999999   56788999


Q ss_pred             eC
Q psy7036         253 SW  254 (254)
Q Consensus       253 ~W  254 (254)
                      +|
T Consensus       154 ~W  155 (268)
T 3mj6_A          154 NW  155 (268)
T ss_dssp             EE
T ss_pred             EE
Confidence            98

>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens}

Probab=99.52  E-value=8.4e-14  Score=89.87  Aligned_cols=90  Identities=12%  Similarity=0.250  Sum_probs=68.4

Q ss_pred             eEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeCCEEee--------eCCcceEEEeecCCcceEEEEEEeccCCCCCe
Q psy7036          11 FTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLS--------EDTRTVMKTTPIGTNKYLVALELDDVIETDAG   82 (254)
Q Consensus        11 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G   82 (254)
                      ++..+....+.+|++++|.|.+.+.|.+.+.|++++..+.        ...++.+...    .....+|.|.+++.+|+|
T Consensus         4 ~~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~----~~~~~~L~I~~v~~~DsG   79 (124)
T 3rbg_A            4 LTNHTETITVEEGQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHH----SANQLSITVPNVTLQDEG   79 (124)
T ss_dssp             CCCSEEEEEEETTSCEEEEEECCCCTTCEEEEECTTSCEEEETTEECSCSSCCEEEEE----ETTEEEEEESSCCGGGCE
T ss_pred             ccCCCccEEEcCCCCEEEEeEEeccCCCEEEEECCCCeEEEEeccccccCCcEEEEeC----CCCEEEEEECCCChHHCE
Confidence            4456677889999999999999988899999998654321        2233333221    112348999999999999


Q ss_pred             EEEEEEEcCCCceEEEEEEEEec
Q psy7036          83 LYKVKAKNKMGEVAASINLNFSR  105 (254)
Q Consensus        83 ~Y~C~~~~~~~~~~~~~~l~v~~  105 (254)
                      .|+|.+.|. +.....+.|.|..
T Consensus        80 ~Y~C~a~n~-g~~~~~~~l~V~~  101 (124)
T 3rbg_A           80 VYKCLHYSD-SVSTKEVKVIVLA  101 (124)
T ss_dssp             EEEEEEESS-SEEEEEEEEEEEC
T ss_pred             EEEEEEEcC-CCCcEEEEEEEEe
Confidence            999999998 8888888888863

>2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A*

Probab=99.52  E-value=1.2e-13  Score=99.81  Aligned_cols=134  Identities=16%  Similarity=0.210  Sum_probs=81.5

Q ss_pred             CCCeeeecCCCeEEEEEEEeeCCCCeEEEEECCE--e---ccc-------CCcceEEEcCCCCceeeEEEEccCCCCCce
Q psy7036         118 KPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGV--Q---VKE-------DKRHKFSIDKDGHSYFASLEIIDVTIEDAG  185 (254)
Q Consensus       118 ~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~--~---~~~-------~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G  185 (254)
                      .+..+.+.+|+.++|.|.+.+.+.+.+.|+|+..  .   +..       ....++....++  ....|.|.+++.+|+|
T Consensus         7 ~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~--~~~~L~I~~v~~~D~G   84 (242)
T 2znx_A            7 SPATLSVTPGNSVSLSCRASQSIGNNLHXYQQKSHESPRLLIKYASQSISGIPSRFSGSGSG--TDFTLSINSVETEDFG   84 (242)
T ss_dssp             ECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEET--TEEEEEESSCCGGGCE
T ss_pred             cCCeEEEcCCCcEEEEEEeCCCCCceEEEEEeCCCCCceEEEEeccccCCCCCCCEEEecCC--CEEEEEECCCChHHCE
Confidence            3455678899999999999988888999998531  1   100       001112211111  1237999999999999


Q ss_pred             eEEEEEEcCCCcc-eEEEEEEEecCCCC---CCCCCCCCeeecCCccccccCCCCcEEEEEEEeccC--CCceeC
Q psy7036         186 KYKVTAKNELGES-NATISLNFDSDDAP---VPGEGTKPVFTERPVTKQSDDDLNDIVIECRLVGEP--EPTISW  254 (254)
Q Consensus       186 ~y~C~~~~~~~~~-~~~~~~~v~~~~~~---~~~~~~~p~~~~~~~~~~~~~g~~~~~l~C~~~~~p--~p~~~W  254 (254)
                      .|.|.+.|..+.. .....|.|......   ......++.....+....+.+|+ .+.|.|.+.+.|  .+.+.|
T Consensus        85 ~Y~C~~~n~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~-~v~L~C~~~g~~~~~~~v~W  158 (242)
T 2znx_A           85 MYFCQQSNSXPYTFGGGTKLEITGGGGSGGGGSGGGGSDIQLQESGPSLVKPSQ-TLSLTCSVTGDSITSDYXSX  158 (242)
T ss_dssp             EEEEEECSSSSCEECCCEEEEEC---------------CCEEEEECCSEECTTS-CEEEEEEEESSCGGGSCEEE
T ss_pred             EEEEeEecCCceEECCCEEEEEcCCCCCCcccccccccceeeecCCcceecCCC-eEEEEEEEEccccCCcceee
Confidence            9999999875431 23345666532110   00000122222233334588899 999999999876  467888

>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus}

Probab=99.52  E-value=4.3e-13  Score=97.81  Aligned_cols=134  Identities=15%  Similarity=0.241  Sum_probs=86.2

Q ss_pred             cCCCeeeecCCCeEEEEEEEeeCCCCeEEEEECC--Ee---cc----------cCCcceEEEcCCCCceeeEEEEccCCC
Q psy7036         117 KKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSG--VQ---VK----------EDKRHKFSIDKDGHSYFASLEIIDVTI  181 (254)
Q Consensus       117 ~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~--~~---~~----------~~~~~~~~~~~~~~~~~~~l~i~~~~~  181 (254)
                      ..+..+.+.+|+.++|.|.+.+.+.+.+.|+|..  ..   +.          ...+..+......  ...+|.|.+++.
T Consensus         8 q~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~--~~~sL~I~~v~~   85 (256)
T 3tf7_C            8 QPDARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGPQMLLKYYSGDPVVQGVNGFEAEFSKSD--SSFHLRKASVHR   85 (256)
T ss_dssp             CSCSEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECSTTCEEEEETTT--TEEEEEESSCCG
T ss_pred             ecCceEEecCCCeEEEEEEeCCCCCceEEEEEECCCCCeEEEEEEccCCcccccCCCeEEEEcCCC--CEEEEEECCCCc
Confidence            3445677889999999999999999999999842  11   00          0111111111111  124799999999


Q ss_pred             CCceeEEEEEEcCCCcc----eEEEEEEEecCCC----------CCCCCCCCCeeecCCccccccCCCCcEEEEEEEecc
Q psy7036         182 EDAGKYKVTAKNELGES----NATISLNFDSDDA----------PVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLVGE  247 (254)
Q Consensus       182 ~d~G~y~C~~~~~~~~~----~~~~~~~v~~~~~----------~~~~~~~~p~~~~~~~~~~~~~g~~~~~l~C~~~~~  247 (254)
                      +|+|.|.|.+.|..+..    .....|.|.....          .......+|.+...|....+.+|+ .++|.|.+.+.
T Consensus        86 ~DsG~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~-~v~L~C~~~~~  164 (256)
T 3tf7_C           86 SDSAVYFCAVSAKGTGSKLSFGKGAKLTVSPGGGGSGGGGSGGGGSGGGGSEAAVTQSPRNKVTVTGE-NVTLSCRQTNS  164 (256)
T ss_dssp             GGCSEEEEEEECTTCTTCEEECCCEEEEEEC---------------------CCEEESCSEEEEETTC-CEEECEEECSC
T ss_pred             ccCEEEEEEEecCCCccceEECCCeEEEEeCCCCCcCCCCcCcccCCCCcCccEEEecCCEEEEeCCC-cEEEEEEcCCC
Confidence            99999999999876522    2234556653100          000012356677777777788999 99999999877


Q ss_pred             CCCceeC
Q psy7036         248 PEPTISW  254 (254)
Q Consensus       248 p~p~~~W  254 (254)
                       .|.+.|
T Consensus       165 -~~~v~W  170 (256)
T 3tf7_C          165 -HNYMYW  170 (256)
T ss_dssp             -CSEEEE
T ss_pred             -ceEEEE
Confidence             567887

>2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens} PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A 3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L 3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ...

Probab=99.51  E-value=1.3e-13  Score=97.84  Aligned_cols=126  Identities=17%  Similarity=0.232  Sum_probs=79.9

Q ss_pred             CCeeeecCCCeEEEEEEEeeCC--CCeEEEEECCE--ecc----------cCCcceEEEcCCCCceeeEEEEccCCCCCc
Q psy7036         119 PSIRQEDDGKRLLFECRIQADP--APTVIWSHSGV--QVK----------EDKRHKFSIDKDGHSYFASLEIIDVTIEDA  184 (254)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~~--~~~~~W~~~~~--~~~----------~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~  184 (254)
                      +....+.+|+.+.|.|.+.+.+  .+.+.|+|++.  .+.          .....++.....+  ..+.|.|.+++.+|+
T Consensus         7 p~~~~v~~G~~v~L~C~v~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~--~~~~L~I~~v~~~D~   84 (216)
T 2xzc_L            7 PPSVSAAPGQKVTISCSGSSSNIGNNYVSWYQQLPGTAPKLLIYDNNKRPSGIPDRFSGSKSG--TSATLGITGLQTGDE   84 (216)
T ss_dssp             CSEEEECTTCCEEEEEECCTTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEET--TEEEEEECSCCGGGC
T ss_pred             CCcEEecCCCeEEEEEEeecCCCCCCeEEEEEeCCCCCcEEEEEecCccCCCCCCceEEeccC--CEEEEEECCCCcccC
Confidence            4567788999999999954433  57899998542  110          0001122221111  123799999999999


Q ss_pred             eeEEEEEEcCCC--cceEEEEEEEecCCCCCCCCCCCCeeecCCccccccCCCCcEEEEEEEecc-CCC-ceeC
Q psy7036         185 GKYKVTAKNELG--ESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLVGE-PEP-TISW  254 (254)
Q Consensus       185 G~y~C~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~l~C~~~~~-p~p-~~~W  254 (254)
                      |.|+|.+.|..+  .......+.|..       ...+|.+...+.......|+ .+.|.|.+.|. |.| .++|
T Consensus        85 G~Y~C~~~~~~~~~~~~~~~~l~V~~-------~~~~P~v~~~~~~~~~~~g~-~v~L~C~~~g~~P~~~~v~W  150 (216)
T 2xzc_L           85 ADYYCGTWDSSLNPVFGGGTKLEIKR-------TVAAPSVFIFPPSDEQLKSG-TASVVCLLNNFYPREAKVQW  150 (216)
T ss_dssp             EEEEEEEECTTSCEEEBCCEEEEECC-------CCBCCEEEEECCCHHHHHTT-EEEEEEEEEEEBSSCCEEEE
T ss_pred             EEEEEEEEeCCCcceECCCEEEEEcC-------CCCCCceEEeCCChhhccCC-cEEEEEEEEeEcCCceEEEE
Confidence            999999999876  122334455542       11356665533333344688 99999999984 555 7988

>1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2 b.1.1.2 PDB: 1i1a_D*

Probab=99.51  E-value=5.3e-14  Score=101.40  Aligned_cols=124  Identities=15%  Similarity=0.192  Sum_probs=80.9

Q ss_pred             ecCCCeEEEEEEEeeC---CCC-eEEEEECCEecccCCcc-eEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcc
Q psy7036         124 EDDGKRLLFECRIQAD---PAP-TVIWSHSGVQVKEDKRH-KFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGES  198 (254)
Q Consensus       124 ~~~g~~~~l~C~~~~~---~~~-~~~W~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~  198 (254)
                      +..|+.++|.|.+.+.   |.+ .+.|++++..+...... ........+...+.|.|.+++.+|.|.|+|.+.|..+..
T Consensus        29 v~~G~~v~L~C~~~g~~~~P~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~D~g~Y~C~~~~~~~~~  108 (239)
T 1i1c_A           29 LGGGLTPKVTCVVVDISQNDPEVRFSWFIDDVEVHTAQTHAPEKQSNSTLRSVSELPIVERDWLNGKTFKCKVNSGAFPA  108 (239)
T ss_dssp             TTSSSCCEEEEEEEEECTTCCCCEEEEEESSCEECCCEECCCEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECSSSSS
T ss_pred             cccCCcEEEEEEEecCccCCCCCEEEEEECCccccCcccccceEcCCCcEEEEEEEEEEhhHccCCCeEEEEEecccCCC
Confidence            5689999999999886   666 89999988665422111 011111122334689999999999999999999988765


Q ss_pred             eEEEEEEEecCCCCCCCCCCCCeeecCCccccccCCCCcEEEEEEEecc-CC-CceeC
Q psy7036         199 NATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLVGE-PE-PTISW  254 (254)
Q Consensus       199 ~~~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~l~C~~~~~-p~-p~~~W  254 (254)
                      .....+.+..      ....+|.+...+.......|+ .+.|.|.+.|. |. ..++|
T Consensus       109 ~~~~~v~~~~------~~~~~P~v~v~~~~~~~~~g~-~~~L~C~~~g~~P~~~~v~W  159 (239)
T 1i1c_A          109 PIEKSISKPE------GTPRGPQVYTMAPPKEEMTQS-QVSITCMVKGFYPPDIYTEW  159 (239)
T ss_dssp             CEEEEECCCS------SCCBCCEEEEECCCGGGGGSS-EEEEEEEEEEEBSSCCEEEE
T ss_pred             CcEEEEecCC------CCCcCCEEEEECCChHHhcCC-cEEEEEEEeeeECCCeEEEE
Confidence            3333332100      112356665444433344577 89999999985 55 36888

>1dee_B IGM RF 2A2; FAB-IBP complex 2.7A resolution binding outside the antigen combining site superantigen FAB VH3 specificity; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1hez_B 1adq_H

Probab=99.51  E-value=3e-13  Score=96.53  Aligned_cols=127  Identities=17%  Similarity=0.261  Sum_probs=80.6

Q ss_pred             eeeecCCCeEEEEEEEeeCC--CCeEEEEECC--Ee---cc------------cCCcceEEEcCCCCceeeEEEEccCCC
Q psy7036         121 IRQEDDGKRLLFECRIQADP--APTVIWSHSG--VQ---VK------------EDKRHKFSIDKDGHSYFASLEIIDVTI  181 (254)
Q Consensus       121 ~~~~~~g~~~~l~C~~~~~~--~~~~~W~~~~--~~---~~------------~~~~~~~~~~~~~~~~~~~l~i~~~~~  181 (254)
                      .+.+.+|+.++|.|.+.+.+  .+.+.|+|..  ..   +.            .....++....+.......|.|.+++.
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~   88 (223)
T 1dee_B            9 GGVVQPGKSLRLSCAASGFTFSGYGMHWVRQAPGKGLEWVALISYDESNKYYADSVKGRFTISRDNSKNTLYLQMNSLRA   88 (223)
T ss_dssp             CCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSCCEEECTTTBTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CEEEcCCCcEEEEEEecCcccCCceEEEEEECCCCCcEEEEEEecCCCccccCcccCCeEEEEecCCCCEEEEEECCCCH
Confidence            45678899999999998765  4689999853  11   10            001112222211111124799999999


Q ss_pred             CCceeEEEEEEcCCC------cceEEEEEEEecCCCCCCCCCCCCeeecCCccccccCCCCcEEEEEEEecc-CCC-cee
Q psy7036         182 EDAGKYKVTAKNELG------ESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLVGE-PEP-TIS  253 (254)
Q Consensus       182 ~d~G~y~C~~~~~~~------~~~~~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~l~C~~~~~-p~p-~~~  253 (254)
                      +|+|.|.|.+.+..+      .......|.|....      ..+|.+...+....+.+|+ .+.|.|.+.+. |.| .++
T Consensus        89 ~D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~~------~~~P~i~~~~~~~~~~~g~-~v~L~C~~~g~~P~p~~v~  161 (223)
T 1dee_B           89 EDTAVYYCAKVKFYDPTAPNDYWGQGTLVTVSSGS------ASAPTLFPLVSCENSNPSS-TVAVGCLAQDFLPDSITFS  161 (223)
T ss_dssp             GGCEEEEEEEESSSSTTCCEEEECCCEEEEECSSC------CBCCEEEEEECTTCCCSSS-EEEEEEEEEEEBSSCCEEE
T ss_pred             HHCEEEEEEEeccccCcccceeecCcEEEEEccCC------CCCCEEEEecCCcccCCCC-cEEEEEEEEEEeCCCeEEE
Confidence            999999999998753      11123456665311      1245554322222456788 99999999987 777 898


Q ss_pred             C
Q psy7036         254 W  254 (254)
Q Consensus       254 W  254 (254)
                      |
T Consensus       162 W  162 (223)
T 1dee_B          162 W  162 (223)
T ss_dssp             E
T ss_pred             e
Confidence            8

>2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN; 1.75A {Gallus gallus}

Probab=99.51  E-value=4.9e-14  Score=101.18  Aligned_cols=128  Identities=14%  Similarity=0.168  Sum_probs=81.8

Q ss_pred             CCeeeecCCCeEEEEEEEeeC-CC-C-eEEEEECCEec-ccCCcceEEEcCCC-CceeeEEEEccCCCCCceeEEEEEEc
Q psy7036         119 PSIRQEDDGKRLLFECRIQAD-PA-P-TVIWSHSGVQV-KEDKRHKFSIDKDG-HSYFASLEIIDVTIEDAGKYKVTAKN  193 (254)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~-~~-~-~~~W~~~~~~~-~~~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~G~y~C~~~~  193 (254)
                      +....+..|+.+.|.|.+.++ |. + .+.|+++|..+ ..... ......++ +...+.|.|.++..+|.|.|+|.+.|
T Consensus        20 p~~~~v~~G~~v~L~C~~~g~~P~~p~~v~W~~~g~~~~~~~~~-~~~~~~~g~~~~~s~L~I~~~~~~D~g~Y~C~~~~   98 (231)
T 2w59_A           20 PSPGELYISLDAKLRCLVVNLPSDSSLSVTWTREKSGNLRPDPM-VLQEHFNGTYSASSAVPVSTQDWLSGERFTCTVQH   98 (231)
T ss_dssp             CCHHHHHTSCCCEEEEEEEEESCCTTCEEEEECSSSSCCCCCCC-EEEECTTSCEEEEEEEECCHHHHHTTCCEEEEEEC
T ss_pred             cChhhcccCCceEEEEEEeCccCCCCeEEEEEcCCeeccccccc-cceECCCCcEEEEEEEEecchhccCCCEEEEEEEc
Confidence            344456689999999999885 63 4 99999998876 32221 11122222 23345799999999999999999999


Q ss_pred             CCCcceEEEEEEEecCCCCCCCCCCCCeeecCCccccccCCCCcEEEEEEEecc-CC-CceeC
Q psy7036         194 ELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLVGE-PE-PTISW  254 (254)
Q Consensus       194 ~~~~~~~~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~l~C~~~~~-p~-p~~~W  254 (254)
                      ..+.......+.+...      ...+|.+...+.......++ .+.|.|.+.|. |. +.++|
T Consensus        99 ~~~~~~~~~~v~~~~~------~~~~P~v~v~~~~~~~~~~~-~~~L~C~~~g~~P~~~~v~W  154 (231)
T 2w59_A           99 EELPLPLSKSVYRNTG------PTTPPLIYPFAPHPEELSLS-RVTLSCLVRGFRPRDIEIRW  154 (231)
T ss_dssp             TTCSSCEEEEECCCCS------CCBCCEEEEECCCGGGGGSS-EEEEEEEEEEEBSSCCEEEE
T ss_pred             CCCCCceEEEEecCCC------CCcCCEEEEeCCCHHHhccC-ceEEEEEEEeccCCCcEEEE
Confidence            8765444444332100      11245444322222224467 89999999996 43 67888

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens}

Probab=99.51  E-value=2.4e-13  Score=82.66  Aligned_cols=80  Identities=16%  Similarity=0.365  Sum_probs=64.3

Q ss_pred             cccCCCeeeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcC
Q psy7036         115 FLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNE  194 (254)
Q Consensus       115 ~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~  194 (254)
                      +...+....+..|+.+.|.|.+.+.|.+.+.|++++..+.....             ..|.|.+++.+|+|.|+|.+.|.
T Consensus         6 i~~~p~~~~v~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~-------------~~L~i~~v~~~d~G~Y~C~a~n~   72 (91)
T 3bfo_A            6 ICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETK-------------KLYMVPYVDLEHQGTYWCHVYND   72 (91)
T ss_dssp             EEECCCCEEECTTSCEEEECEEECSSCCEEEEEETTEECTTCCS-------------SEEEESSCCGGGCEEEEEEEECS
T ss_pred             EEECCCccEecCCCcEEEEEEeccCCCCEEEEEcCCeeCCcCCC-------------CeEEECCCCHHhCEEEEEEEEcC
Confidence            33445556788999999999999999999999999988754321             17999999999999999999999


Q ss_pred             CCcce-EEEEEEEe
Q psy7036         195 LGESN-ATISLNFD  207 (254)
Q Consensus       195 ~~~~~-~~~~~~v~  207 (254)
                      .|... ..+.|.|.
T Consensus        73 ~g~~~s~~~~l~V~   86 (91)
T 3bfo_A           73 RDSQDSKKVEIIID   86 (91)
T ss_dssp             SCEEECCCEEEEEC
T ss_pred             CCCEEeeeEEEEEe
Confidence            88643 45666664

>3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A*

Probab=99.51  E-value=2.8e-13  Score=98.43  Aligned_cols=136  Identities=20%  Similarity=0.271  Sum_probs=83.2

Q ss_pred             ccCCCeeeecCCCeEEEEEEEeeCCCCeEEEEECCE-----ecc-------cCCcceEEEcCCCCceeeEEEEccCCCCC
Q psy7036         116 LKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGV-----QVK-------EDKRHKFSIDKDGHSYFASLEIIDVTIED  183 (254)
Q Consensus       116 ~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~-----~~~-------~~~~~~~~~~~~~~~~~~~l~i~~~~~~d  183 (254)
                      ...+..+.+.+|+.++|.|.+.+.+.+.+.|+|+..     .+.       .....++.....+  ....|.|.+++.+|
T Consensus         8 ~~~p~~~~v~~G~~v~L~C~~~~~~~~~i~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~--~~~~L~I~~v~~~D   85 (250)
T 3esu_F            8 IQSTSSLSASLGDRVTISCRASQDIRNYLNWYQQKPDGTVKLLIYYTSRLQSGVPSRFSGSGSG--TDYSLTISNLEQED   85 (250)
T ss_dssp             ECSCSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEET--TEEEEEESSCCGGG
T ss_pred             EecCCEEEeeCCCcEEEEEEecccCCceEEEEEECCCCCCEEEEEEeCCCCCCCCCCEEEeCCC--CEEEEEEccCChhh
Confidence            334556778899999999999999999999998531     110       0001111111111  12379999999999


Q ss_pred             ceeEEEEEEcCCCcc-eEEEEEEEecCCCC---CC------CCCCCCeeecCCccccccCCCCcEEEEEEEeccC--CCc
Q psy7036         184 AGKYKVTAKNELGES-NATISLNFDSDDAP---VP------GEGTKPVFTERPVTKQSDDDLNDIVIECRLVGEP--EPT  251 (254)
Q Consensus       184 ~G~y~C~~~~~~~~~-~~~~~~~v~~~~~~---~~------~~~~~p~~~~~~~~~~~~~g~~~~~l~C~~~~~p--~p~  251 (254)
                      +|.|.|.+.|..+.. .....+.|......   .+      ....++.+...+....+.+|+ .+.|.|.+.+.|  .+.
T Consensus        86 ~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~-~v~L~C~~~~~~~~~~~  164 (250)
T 3esu_F           86 IGTYFCQQGNTLPWTFGGGTKLEIRRGGGGSGGGGSGGGGSGGGGSEVQLQQSGPELVKPGA-SVKISCKDSGYAFSSSW  164 (250)
T ss_dssp             CEEEEEEECSSSSCEECCCEEEEEC------------------------CEECCCEEECTTC-CEEEEEECCSTTGGGSE
T ss_pred             CEEEEEEEeeCCCceECCCEEEEEECCCCcccccccccccccCcccceEEecCCceEEcCCc-eEEEEEEecCCcccCCE
Confidence            999999999876542 23334555431000   00      000122233344555688899 999999999876  677


Q ss_pred             eeC
Q psy7036         252 ISW  254 (254)
Q Consensus       252 ~~W  254 (254)
                      +.|
T Consensus       165 v~W  167 (250)
T 3esu_F          165 MNW  167 (250)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            888

>3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L

Probab=99.51  E-value=1.3e-13  Score=101.66  Aligned_cols=136  Identities=18%  Similarity=0.224  Sum_probs=84.2

Q ss_pred             ccCCCeeeecCCCeEEEEEEEeeCCCCeEEEEECCE-----eccc-------CCcceEEEcCCCCceeeEEEEccCCCCC
Q psy7036         116 LKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGV-----QVKE-------DKRHKFSIDKDGHSYFASLEIIDVTIED  183 (254)
Q Consensus       116 ~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~-----~~~~-------~~~~~~~~~~~~~~~~~~l~i~~~~~~d  183 (254)
                      ...+..+.+.+|+.++|.|.+.+.+.+.+.|+|++.     .+..       ....++....++.  ...|.|.+++.+|
T Consensus        16 ~~~p~~~~v~~G~~v~L~C~~~~~p~~~i~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~--~~~L~I~~v~~~D   93 (276)
T 3auv_A           16 TQSPSSLSASVGDRVTITCRASQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGSGT--DFTLTISSLQPED   93 (276)
T ss_dssp             EEECSEEECCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETT--EEEEEESSCCGGG
T ss_pred             EeCCCeEEEcCCCCEEEEeEcCCCCCCcEEEEEECCCCCCEEEEEEcCccCCCCCCCEEEeccCC--eEEEEEccCChhh
Confidence            344556778899999999999988888999998642     1110       0011122211111  2379999999999


Q ss_pred             ceeEEEEEEcCCCc-ceEEEEEEEecCCCC----CCCCCCCCeeecCCccccccCCCCcEEEEEEEeccC--CCceeC
Q psy7036         184 AGKYKVTAKNELGE-SNATISLNFDSDDAP----VPGEGTKPVFTERPVTKQSDDDLNDIVIECRLVGEP--EPTISW  254 (254)
Q Consensus       184 ~G~y~C~~~~~~~~-~~~~~~~~v~~~~~~----~~~~~~~p~~~~~~~~~~~~~g~~~~~l~C~~~~~p--~p~~~W  254 (254)
                      +|.|.|.+.|..+. ......|.|...+..    ......++.....|....+.+|+ .+.|.|.+.+.|  .+.+.|
T Consensus        94 sG~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~p~~~~~~p~~~~v~~G~-~v~L~C~~~g~~~~~~~v~W  170 (276)
T 3auv_A           94 FATYYCQQHYTTPPTFGCGTKVEIKGGGGGSIEGRSGGGGSEVQLVESGGGLVQPGG-SLRLSCAASGFTISDYWIHW  170 (276)
T ss_dssp             CEEEEEEECSSSSCCCCCCEEEEC-----------------CCEEEEECCEEECTTC-CEEEEEEEESSCGGGSEEEE
T ss_pred             CEEEEEEEecCCcccccCCEEEEEecCCCccccccccccCcceEEECCCceEecCCC-eEEEEEEecCccCCCCEEEE
Confidence            99999999987553 233345555532110    00000122223334566788999 999999999886  478888

>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}

Probab=99.51  E-value=2.5e-13  Score=96.24  Aligned_cols=126  Identities=14%  Similarity=0.241  Sum_probs=83.0

Q ss_pred             CCeeeecCCCeEEEEEEEeeCCCCe---EEEEECCEecccCC----------------cceEEEcCC-CCceeeEEEEcc
Q psy7036         119 PSIRQEDDGKRLLFECRIQADPAPT---VIWSHSGVQVKEDK----------------RHKFSIDKD-GHSYFASLEIID  178 (254)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~~~~~---~~W~~~~~~~~~~~----------------~~~~~~~~~-~~~~~~~l~i~~  178 (254)
                      +..+.+..|+.+.|.|.+.+.+.+.   +.|+|++..+....                ..++..... ......+|.|.+
T Consensus         6 p~~vtv~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~   85 (218)
T 4frw_A            6 SDVVTVVLGQDAKLPCFYRGDSGEQVGQVAWARVDAGEGAQELALLHSKYGLHVSPAYEGRVEQPPPPRNPLDGSVLLRN   85 (218)
T ss_dssp             CSEEEEETTSCEEECCEECCCTTCEEEEEEEEEECSSSCEEEEEEEETTTEEEECGGGTTTEECCSSCCCTTBCCEEESS
T ss_pred             CCeEEEEcCCCEEEEEEEEcCCCCCccEEEEEECCCCCCceeEEEecCCCCeEeCccccceEEEecccccCCeEEEEEee
Confidence            3557788999999999998887654   89999765432110                001111111 011124699999


Q ss_pred             CCCCCceeEEEEEEcCCCcce-EEEEEEEecCCCCCCCCCCCCeeecCCccccccCCCCcEEEEEEEeccCCCceeC
Q psy7036         179 VTIEDAGKYKVTAKNELGESN-ATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLVGEPEPTISW  254 (254)
Q Consensus       179 ~~~~d~G~y~C~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~l~C~~~~~p~p~~~W  254 (254)
                      ++.+|+|.|.|.+.+..+... ....+.+...         ++.....+....+..++ .+.|.|.+.|.|.|.|+|
T Consensus        86 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~-~~~~~c~~~g~p~p~i~W  152 (218)
T 4frw_A           86 AVQADEGEYECRVSTFPAGSFQARLRLRVLVP---------PLPSLNPGPALEEGQGL-TLAASCTAEGSPAPSVTW  152 (218)
T ss_dssp             CCGGGCEEEEEEEEEETTEEEEEEEEEEEEBC---------CCCEEEECSCEETTCCS-EEEEEEEEEEBSCCEEEE
T ss_pred             ccHHHCCceeEEEEeccCceeeeEEEEEEeee---------ccceeeeeeeeeeeecc-ccceeeeccCCcCceEEE
Confidence            999999999999998766543 3333333321         12222334445667778 999999999999999999

>1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex (immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.51  E-value=3.4e-14  Score=100.63  Aligned_cols=127  Identities=18%  Similarity=0.242  Sum_probs=82.1

Q ss_pred             CCeeeecCCCeEEEEEEEeeCCCCeEEEEECC--Eecc----------cCCcceEEEcCCCCceeeEEEEccCCCCCcee
Q psy7036         119 PSIRQEDDGKRLLFECRIQADPAPTVIWSHSG--VQVK----------EDKRHKFSIDKDGHSYFASLEIIDVTIEDAGK  186 (254)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~--~~~~----------~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~  186 (254)
                      +....+..|+.+.|.|.+.+.+.+.+.|+|+.  ..+.          .....++.....+  ....|.|.+++.+|+|.
T Consensus         6 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~--~~~~L~I~~v~~~D~G~   83 (212)
T 1nfd_E            6 PSSASVTVGETVKITCSGDQLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTSG--TTATLTISGAQPEDEAA   83 (212)
T ss_dssp             CSEEEEETTSCCCEEEEETTGGGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEEET--TEEEEEETTCCGGGCSE
T ss_pred             CCeEEEeCCCcEEEEEecCCCCCCeEEEEEECCCCCcEEEEEeccccCCCccccEEEEeeC--CEEEEEECcCCcccCEE
Confidence            45667889999999999877777789999853  2220          0001112111111  12379999999999999


Q ss_pred             EEEEEEcCCCc---ceEEEEEEEecCCCCCCCCCCCCeeecCCccccccCCCCcEEEEEEEecc-CC-CceeC
Q psy7036         187 YKVTAKNELGE---SNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLVGE-PE-PTISW  254 (254)
Q Consensus       187 y~C~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~l~C~~~~~-p~-p~~~W  254 (254)
                      |+|.+.|..+.   ......+.|....      ..+|.+...+....+.+|+ .+.|.|.+.|. |+ |.++|
T Consensus        84 Y~C~~~n~~~~~~~~~~~~~l~V~~~~------~~~p~v~~~~~~~~~~~g~-~v~L~C~~~g~~p~~~~v~W  149 (212)
T 1nfd_E           84 YYCLSSYGDNNDLVFGSGTQLTVLRGP------KSSPKVTVFPPSPEELRTN-KATLVCLVNDFYPGSATVTW  149 (212)
T ss_dssp             EEEEEEETTTTEEEECCCEEEEEECCC------CBCCEEECCCCCHHHHHTT-EECCCEEEEEEBSSCCEEEE
T ss_pred             EEEEEEcccCcccccCCceEEEEccCC------CCCCEEEeeCCchHhccCC-ceEEEEEEEeeECCccEEEE
Confidence            99999973221   1223445554211      1256666544444556788 99999999987 55 68998

>4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus}

Probab=99.50  E-value=3.2e-14  Score=101.43  Aligned_cols=123  Identities=21%  Similarity=0.314  Sum_probs=79.4

Q ss_pred             eeecCCCeEEEEEEEeeCCC-----CeEEEEECCEecc-----------cCCcceEEEcCCC-CceeeEEEEccCCCCCc
Q psy7036         122 RQEDDGKRLLFECRIQADPA-----PTVIWSHSGVQVK-----------EDKRHKFSIDKDG-HSYFASLEIIDVTIEDA  184 (254)
Q Consensus       122 ~~~~~g~~~~l~C~~~~~~~-----~~~~W~~~~~~~~-----------~~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~  184 (254)
                      +.+.+|+.+.|.|.+.+.+.     +.+.|++++....           .....+.....+. ......|.|.+++.+|+
T Consensus         5 v~~~~G~~v~L~C~~~~~~~~~~~~~~v~W~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v~~~D~   84 (222)
T 4i0k_A            5 VVALVDTDATLRCSFSPEPGFSLAQLNLIWQLTDTKQLVHSFTEGRDQGSAYSNRTALFPDLLVQGNASLRLQRVRVTDE   84 (222)
T ss_dssp             CCCCTTSCEEECCBCCCCTTCCTTTEEEEEEETTTCCEEEEEETTEEEEESSCSCEECCTTTGGGTBCCEEECSCCGGGC
T ss_pred             EEEECCCCeEEEEEecCCCCCCCCceEEEEEECCCccEEEEEcCCcccccceeCcEEEecccccCCeEEEEECCcccccC
Confidence            45678999999999887653     6799999864321           0111122221110 01123799999999999


Q ss_pred             eeEEEEEEcCCCcceEEEEEEEecCCCCCCCCCCCCeeecCCccccccCCCCcEEEEEEE-eccCCCceeC
Q psy7036         185 GKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRL-VGEPEPTISW  254 (254)
Q Consensus       185 G~y~C~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~l~C~~-~~~p~p~~~W  254 (254)
                      |.|+|.+.+. +.....+.|.|..       ....|.+...+. ..+.+|+ .+.|.|.+ .+.|.|.++|
T Consensus        85 G~Y~C~~~~~-~~~~~~~~l~V~~-------~~~~p~i~~~~~-~~v~~G~-~~~l~C~~~~g~P~~~v~W  145 (222)
T 4i0k_A           85 GSYTCFVSIQ-DFDSAAVSLQVAA-------PYSKPSMTLEPN-KDLRPGN-MVTITCSSYQGYPEAEVFW  145 (222)
T ss_dssp             SCEEEEEEEC-CCCCCCCCCCCCB-------CCCCCEEECCC------CCS-EEEEEEEEEEEBSCCEEEE
T ss_pred             EEEEEEEEeC-CCceEEEEEEEEc-------CCCCCcEEeCCC-ceecCCc-eEEEEEecccccCCCeEEE
Confidence            9999999985 3334444454442       123456665553 3566788 99999999 8899999998

>3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B* 1h3p_L

Probab=99.50  E-value=2.3e-13  Score=98.96  Aligned_cols=126  Identities=18%  Similarity=0.236  Sum_probs=81.8

Q ss_pred             CCeeeecCCCeEEEEEEEeeCC-----CCeEEEEECCE--ec---c-------cCCcceEEEcCCCCceeeEEEEccCCC
Q psy7036         119 PSIRQEDDGKRLLFECRIQADP-----APTVIWSHSGV--QV---K-------EDKRHKFSIDKDGHSYFASLEIIDVTI  181 (254)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~~-----~~~~~W~~~~~--~~---~-------~~~~~~~~~~~~~~~~~~~l~i~~~~~  181 (254)
                      +..+.+.+|+.++|.|.+.+.+     .+.+.|+|++.  ..   .       .....++.....+  ....|.|.+++.
T Consensus        41 p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~--~~~~L~I~~v~~  118 (252)
T 3bkj_L           41 PLSLPVNLGEQASISCRSSQSIVHSNGHTYLEWYLQRPGQSPKLLIYQVSTRFSGVPDRFSGSGSG--TDFTLRISRVEA  118 (252)
T ss_dssp             CSEEEECTTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEET--TEEEEEESSCCG
T ss_pred             CceEEEeCCCcEEEEEEcCCCccccCCCCcEEEEEECCCCCcEEEEEcCCcccCCcCCceEEEccC--CEEEEEECCCCc
Confidence            4566788999999999998887     57899999641  11   0       0001112111111  123799999999


Q ss_pred             CCceeEEEEEEcCCCcc-eEEEEEEEecCCCCCCCCCCCCeeecCCccccccCCCCcEEEEEEEecc-CCC-ceeC
Q psy7036         182 EDAGKYKVTAKNELGES-NATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLVGE-PEP-TISW  254 (254)
Q Consensus       182 ~d~G~y~C~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~l~C~~~~~-p~p-~~~W  254 (254)
                      +|+|.|+|.+.|..+.. .....+.|...       ..+|.+...+....+.+|+ .+.|.|.+.|. |.+ .++|
T Consensus       119 ~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~-------~~~P~v~~~~~~~~~~~g~-~v~L~C~~~g~~p~~~~v~W  186 (252)
T 3bkj_L          119 EDLGVYYCFQASLVPLTFGAGTKLELKRA-------DAAPTVSIFPPSSEQLTSG-GASVVCFLNNFYPKDINVKW  186 (252)
T ss_dssp             GGCEEEEEEECSBSSCEECCCEEEEECCC-------CBCCEEEEECCCHHHHHHT-EEEEEEEEEEEBSSCCEEEE
T ss_pred             ccCEEEEEEEEcCCccEECCCEEEEEeCC-------CcCcEEEEeCCChhhcCCC-cEEEEEEEeeEeCCCcEEEE
Confidence            99999999999876532 22344556431       1245565544333445788 99999999985 544 6888

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens}

Probab=99.50  E-value=2.1e-13  Score=86.56  Aligned_cols=99  Identities=21%  Similarity=0.370  Sum_probs=73.2

Q ss_pred             eEEEEEEEEeccccCCCCCccccCCCeeeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCCCCceeeEE
Q psy7036          95 VAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASL  174 (254)
Q Consensus        95 ~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l  174 (254)
                      ....+.|.|..     .+|.+...+....+.+|+.+.|.|.+.+.  +.+.|+|++..+....+..+...  +.  ...|
T Consensus         7 ~~~~~~l~V~~-----~pp~~~~~~~~~~v~~G~~v~l~C~~~~~--p~v~W~k~~~~l~~~~~~~~~~~--~~--~~~L   75 (113)
T 2edh_A            7 GRTSAMLTVRA-----LPIKFTEGLRNEEATEGATAVLRCELSKM--APVEWWKGHETLRDGDRHSLRQD--GA--RCEL   75 (113)
T ss_dssp             CCCCCCCCCCC-----SCCCEEECCCCCEECTTSCEEEEEEESSC--CCCEEEESSSBCCCSSSEEEEEE--TT--EEEE
T ss_pred             CcEEEEEEEEc-----CCCcccccCCceEEeCCCeEEEEEEECCC--CcEEEEECCEECCCCCcEEEEEC--CC--EEEE
Confidence            34445556542     44566666667788999999999999665  67999999998876655444332  21  2379


Q ss_pred             EEccCCCCCceeEEEEEEcCCCcceEEEEEEEec
Q psy7036         175 EIIDVTIEDAGKYKVTAKNELGESNATISLNFDS  208 (254)
Q Consensus       175 ~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~v~~  208 (254)
                      .|.+++.+|+|.|+|.+    +.......|.|..
T Consensus        76 ~I~~v~~~D~G~Y~C~a----~~~~~~~~l~V~~  105 (113)
T 2edh_A           76 QIRGLVAEDAGEYLCMC----GKERTSAMLTVRA  105 (113)
T ss_dssp             EECSCCSTTCEEEEEEE----TTEEEEEEEEECC
T ss_pred             EECCCChhhCEEEEEEe----CCCCEEEEEEEeC
Confidence            99999999999999999    6667777787764

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.50  E-value=2.9e-14  Score=90.77  Aligned_cols=90  Identities=17%  Similarity=0.326  Sum_probs=68.8

Q ss_pred             CCccccCCCeeeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEE
Q psy7036         112 APTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTA  191 (254)
Q Consensus       112 ~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~  191 (254)
                      ++.+...+....+.+|+.+.|.|.+.+.|.+.+.|+|++..+.......+.....+.   ..|.|.++..+|+|.|+|.+
T Consensus        13 p~~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~l~~~~~~~~~~~~~~~---~~L~I~~v~~~D~G~Y~C~~   89 (115)
T 2cr6_A           13 RVHIIEDLEDVDVQEGSSATFRCRISPANYEPVHWFLDKTPLHANELNEIDAQPGGY---HVLTLRQLALKDSGTIYFEA   89 (115)
T ss_dssp             CCEEEECCCEEEEETTSCEECCCEEESTTCCSCEEEESSCEECCSSSCCBCCBTTTB---CCBEECSCCTTTCEEEEEEE
T ss_pred             CCeEeccCccEEEeCCCcEEEEEEEcCCCCCccEEEECCEECCCCCcEEEEEcCCCE---EEEEEcCCChhhCEEEEEEE
Confidence            345555667788899999999999999999999999999988766544433221221   27999999999999999993


Q ss_pred             EcCCCcceEEEEEEEec
Q psy7036         192 KNELGESNATISLNFDS  208 (254)
Q Consensus       192 ~~~~~~~~~~~~~~v~~  208 (254)
                          |.......|.|..
T Consensus        90 ----g~~~~~~~L~V~~  102 (115)
T 2cr6_A           90 ----GDQRASAALRVTE  102 (115)
T ss_dssp             ----TTEECCEEEEEEC
T ss_pred             ----CCeeEEEEEEEEC
Confidence                5566667777774

>2eys_A NKT15; natural killer T cell receptor, immune system; 2.21A {Homo sapiens} PDB: 2eyr_A 2eyt_A 3huj_E* 3tyf_A 3tzv_A* 3sdx_E* 2po6_C* 2cde_A 3to4_C*

Probab=99.50  E-value=6e-13  Score=93.67  Aligned_cols=165  Identities=12%  Similarity=0.199  Sum_probs=98.7

Q ss_pred             eeEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeCC-----EEe-e--e------CCcceEEEeecCCcceEEEEEEec
Q psy7036          10 SFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGE-----TQL-S--E------DTRTVMKTTPIGTNKYLVALELDD   75 (254)
Q Consensus        10 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~-----~~~-~--~------~~~~~~~~~~~~~~~~~~~l~i~~   75 (254)
                      .+++.|..+.+.+|++|+|.|.+.+.....+.|||..     ..+ .  .      ..++.....   .......|.|.+
T Consensus         5 ~v~Q~p~~~~v~~G~svtL~C~~s~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~Rfs~~~~---~~~~~~sL~I~~   81 (210)
T 2eys_A            5 QVEQSPQSLIILEGKNCTLQCNYTVSPFSNLRWYKQDTGRGPVSLTIMTFSENTKSNGRYTATLD---ADTKQSSLHITA   81 (210)
T ss_dssp             CEEEECSEEEEETTCCEEEEEEECCSSCCEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEE---TTTTEEEEEESS
T ss_pred             eEEEeCCEEEEecCCCEEEEEEECCCCCCeEEEEEeCCCCCCEEEEEEecCCCCccCCCEEEEEc---CCCCEEEEEEcc
Confidence            4567788889999999999999976666689999842     122 1  1      112222111   122345899999


Q ss_pred             cCCCCCeEEEEEEEcCC---CceE--EEEEEEEeccccCCCCCccccCCCeeeecCCCeEEEEEEEeeCCCCeEEEEECC
Q psy7036          76 VIETDAGLYKVKAKNKM---GEVA--ASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSG  150 (254)
Q Consensus        76 ~~~~d~G~Y~C~~~~~~---~~~~--~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~  150 (254)
                      ++.+|+|.|.|.+.+..   +...  ....|.|...... ..|.+.....     ....++|.|.+.+++++ +.- .++
T Consensus        82 ~~~~Dsg~Y~C~~~~~~~~~~~~~fg~gt~L~V~~~~~~-~~P~V~~~~~-----~~~~~tl~Cl~~gf~P~-~~v-~~~  153 (210)
T 2eys_A           82 SQLSDSASYICVVSDRGSTLGRLYFGRGTQLTVWPDIQN-PDPAVYQLRD-----SKSSDKSVCLFTDFDSQ-TNV-SQS  153 (210)
T ss_dssp             CCGGGCEEEEEEEESCSSTTCCEEECCCEEEEEECCCSS-CCCEEEEECC-----CSSSSCEEEEEESCCTT-CCC-CCC
T ss_pred             CCcccCceEEEEEEccCCCcccceECCCEEEEEECCCCC-CCCeEEecCC-----CCCCceEEEEcccccCC-cEe-ccc
Confidence            99999999999998742   1111  2346666532111 1222211111     12267899999987654 320 111


Q ss_pred             EecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCC
Q psy7036         151 VQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELG  196 (254)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~  196 (254)
                           ...... ....     ..|.+..+...+.|.|.|.+.|.++
T Consensus       154 -----~~~~~~-~t~~-----~~l~~~~~~~~~~~~~~w~~~~~~~  188 (210)
T 2eys_A          154 -----KDSDVY-ITDK-----CVLDMRSMDFKSNSAVAWSNKSDFA  188 (210)
T ss_dssp             -----SSTTEE-ECCC-----EEEEETTTTEEEEEEEEEECSTTCC
T ss_pred             -----cCcceE-ccCc-----hhcchhcccccccchhhccCCCceE
Confidence                 011111 1111     2677888888899999999887665

>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.50  E-value=6.7e-13  Score=96.55  Aligned_cols=128  Identities=11%  Similarity=0.157  Sum_probs=85.0

Q ss_pred             CCccccCCCeeeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEE
Q psy7036         112 APTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTA  191 (254)
Q Consensus       112 ~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~  191 (254)
                      +|.+...+. ..+.+|++++|.|.+.+ +.+.+.|+|++..+....   .............|.|.+++.+|+|.|+|.+
T Consensus         7 kP~i~~~P~-~~V~~G~~VtL~C~~~~-~~~~~~W~k~g~~~~~~~---~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a   81 (257)
T 1b6u_A            7 KPSLLAHPG-PLVKSEETVILQCWSDV-RFQHFLLHREGKFKDTLH---LIGEHHDGVSKANFSIGPMMQDLAGTYRCYG   81 (257)
T ss_dssp             CCEECCBSC-SEEESSCCEEEEEEESS-CCSEEEEEEESTTCEEEE---EECBCCTTCEEEEEEECSCCTTTCEEEEEEE
T ss_pred             CCEEEEcCC-CEecCCCCEEEEEecCC-CCcEEEEEECCCCCCcce---eeeeccCCCceEEEEeecCCcccCEEEEEeE
Confidence            444444443 45778999999999864 467899999986542110   0000001112347999999999999999999


Q ss_pred             EcCCC-----cceEEEEEEEecCCCCCCCCCCCCeeecCCccccccCCCCcEEEEEEEeccCCCceeC
Q psy7036         192 KNELG-----ESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLVGEPEPTISW  254 (254)
Q Consensus       192 ~~~~~-----~~~~~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~l~C~~~~~p~p~~~W  254 (254)
                      .+...     ..+..+.|.|...       ...|.+...+. ..+.+|+ .++|.|.+.+.+ +.+.|
T Consensus        82 ~~~~~~~~~s~~S~~~~L~V~~~-------~~~P~l~~~p~-~~V~~G~-~vtL~C~~~~~~-~~~~w  139 (257)
T 1b6u_A           82 SVTHSPYQLSAPSDPLDIVITGL-------YEKPSLSAQPG-PTVLAGE-SVTLSCSSRSSY-DMYHL  139 (257)
T ss_dssp             ECSSCTTSCCCCCCCEEEEEECS-------SCCCEEECSSC-TTCBTTC-EEEEEEECSSCC-SEEEE
T ss_pred             eccCCCccccccCCCEEEecccC-------CCCcceEccCC-CccCCCC-EEEEEEeCCCCC-cEEEE
Confidence            86432     2245566666641       23567776665 3678899 999999998764 56776

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens}

Probab=99.49  E-value=9.4e-12  Score=103.93  Aligned_cols=171  Identities=13%  Similarity=0.192  Sum_probs=112.9

Q ss_pred             CCCeeEeCCCceeecCCCeEEEEEEEeeCCCCceE-EE--eCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeE
Q psy7036           7 FAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIV-WF--RGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGL   83 (254)
Q Consensus         7 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~-W~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~   83 (254)
                      .+|.|. .+....+.+|++++|.|.+.|.|.+.+. |+  ++|..+......     ..........|.|.++...|.|.
T Consensus       164 ~~p~~~-~~~~~~v~~G~~v~l~C~~~g~P~p~i~~W~~~~~g~~l~~~~~~-----~~~~~~~~~~l~I~~~~~~d~g~  237 (731)
T 2v5y_A          164 RTPHFL-RIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIK-----VTSSRRFIASFNVVNTTKRDAGK  237 (731)
T ss_dssp             SSCEEC-CCCCEEEETTSCEEEEEEEESCCCTTCEEEEEESSSCCEEEEEEE-----ECCSSEEEEEEEECSCCTTTCEE
T ss_pred             cccccc-cccceEEeCCCcEEEEEEeCCCCCCceeEEEecCCCccccccceE-----EeccccceEEEEEcccccccCeE
Confidence            467776 5667889999999999999999999988 88  677766433211     11122234589999999999999


Q ss_pred             EEEEEEcCCCc-eEEEEEEEEeccccCCCCCccccCCCeeeecCCCeEEEEEEEeeC---CC-C--eEEEEECCEecccC
Q psy7036          84 YKVKAKNKMGE-VAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQAD---PA-P--TVIWSHSGVQVKED  156 (254)
Q Consensus        84 Y~C~~~~~~~~-~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~---~~-~--~~~W~~~~~~~~~~  156 (254)
                      |+|.+.|..|. ......|.|..      +|.....+....+ ....+.|.|.....   .+ .  .+.|...+..    
T Consensus       238 Y~c~A~n~~G~~~s~~~~l~V~~------~P~~~~~p~~~~~-~~~~v~l~w~~~~~~g~~~i~~Y~v~~~~~~~~----  306 (731)
T 2v5y_A          238 YRCMIRTEGGVGISNYAELVVKE------PPVPIAPPQLASV-GATYLWIQLNANSINGDGPIVAREVEYCTASGS----  306 (731)
T ss_dssp             EEEEEEETTEEEECCCEEEEEEC------CCCBSSCCEEEEE-CSSCEEEECCCSSBSSCSCCCEEEEEEEESSSS----
T ss_pred             EEEEEECCCCCcceeeEEEEEec------CCCCCCCcceecc-CCceEEEEeCCcccCCCCccEEEEEEEEECCCC----
Confidence            99999999987 66667777763      3332222222222 45667888764321   11 1  3555443211    


Q ss_pred             CcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEE--cCCCcceE
Q psy7036         157 KRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAK--NELGESNA  200 (254)
Q Consensus       157 ~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~--~~~~~~~~  200 (254)
                       .........     ..+.|.++...+...|+|.|.  |..|....
T Consensus       307 -~~~~~~~~~-----~~~~i~~L~p~t~Y~~~V~A~~~N~~G~s~~  346 (731)
T 2v5y_A          307 -WNDRQPVDS-----TSYKIGHLDPDTEYEISVLLTRPGEGGTGSP  346 (731)
T ss_dssp             -CEEEEECCS-----SEEEECSCCTTCEEEEEEEEECSSTTCSCCB
T ss_pred             -ceEEeccCc-----ceEEEeCCCCCCEEEEEEEEEecCCCccccC
Confidence             111111112     278999999988888999999  98886543

>1zxq_A ICAM-2, intercellular adhesion molecule-2; immunoglobulin fold, cell adhesion, glycoprotein, transmembr; HET: NAG; 2.20A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4

Probab=99.49  E-value=8.2e-12  Score=85.24  Aligned_cols=163  Identities=11%  Similarity=0.172  Sum_probs=101.1

Q ss_pred             eeEeCCCceeecCCCeEEEEEEEeeCCCCc-eEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEE
Q psy7036          10 SFTQKPQLRQEDEGNRLIFECQLLCNPKPD-IVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKA   88 (254)
Q Consensus        10 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~-v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~   88 (254)
                      .+.+.|+...|..|+++.|+|.+.. +.+. +.|.-.-.      +...  .   .+.....|.|.+++  |.|.|.|.+
T Consensus         4 ~v~v~P~~~~V~~G~S~~l~Cs~~c-~~p~~~glet~l~------~~~~--~---~g~~w~~l~l~~vs--~~g~~~C~~   69 (192)
T 1zxq_A            4 EVHVRPKKLAVEPKGSLEVNCSTTC-NQPEVGGLETSLN------KILL--D---EQAQWKHYLVSNIS--HDTVLQCHF   69 (192)
T ss_dssp             CEEEESSEEEECTTEEEEEEEEESC-SSCSEEEEECSSE------EEEE--E---EETTEEEEEEEEEC--SCEEEEEEE
T ss_pred             EEEEeCCCcEEeCCCcEEEEEECCC-CCccccccccccC------ceEE--c---CCCCeEEEEEeccc--cCCeeEEEE
Confidence            4567788888999999999999963 4443 44432111      0000  0   01122269999998  789999999


Q ss_pred             EcCCCceEEEEEEEEeccccCCCCCc-cccCCCeeeecCCCeEEEEEEEee-CCCCe--EEEEECCEecccCCcceEEEc
Q psy7036          89 KNKMGEVAASINLNFSREQIDGLAPT-FLKKPSIRQEDDGKRLLFECRIQA-DPAPT--VIWSHSGVQVKEDKRHKFSID  164 (254)
Q Consensus        89 ~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~~~~~~~~~~g~~~~l~C~~~~-~~~~~--~~W~~~~~~~~~~~~~~~~~~  164 (254)
                      .-........+.|.|..      +|. .........+.+|+.++|.|.+.+ .|...  +.|+++++.+.... +. ...
T Consensus        70 ~c~~~~~~~~~~itVy~------~P~~v~i~~~p~~~~~G~~~tL~C~v~~v~P~~~L~v~llrG~~~l~~~~-f~-~~~  141 (192)
T 1zxq_A           70 TCSGKQESMNSNVSVYQ------PPRQVILTLQPTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYET-FG-KAA  141 (192)
T ss_dssp             EETTEEEEEEEEEEECB------CCCCCEEEEESSEECTTSEEEEEEEECSCBCGGGEEEEEEETTEEEEEEE-CC-SST
T ss_pred             ECCCcceEEEEEEEEEe------CCCCceEccCCccccCCCcEEEEEEeCCeECCCCcEEEEEcCCEEeeecc-cc-ccc
Confidence            87655666788888873      332 222211235678999999999885 55544  89999988874321 00 001


Q ss_pred             CCCCceeeEEEEccCCCCCce-eEEEEEEcCC
Q psy7036         165 KDGHSYFASLEIIDVTIEDAG-KYKVTAKNEL  195 (254)
Q Consensus       165 ~~~~~~~~~l~i~~~~~~d~G-~y~C~~~~~~  195 (254)
                      .........+.+. ++++|.| .|+|.|.-..
T Consensus       142 ~~~~~~tv~~~~~-~~r~D~g~~~sC~A~L~L  172 (192)
T 1zxq_A          142 PAPQEATATFNST-ADREDGHRNFSCLAVLDL  172 (192)
T ss_dssp             TCTTCEEEEEEEE-CCGGGGGCEEEEEEEEEC
T ss_pred             CcCcceEEEEEEe-cchhhCCceEEEEEEecC
Confidence            1112222334444 4555666 9999998766

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.49  E-value=1.9e-13  Score=85.37  Aligned_cols=89  Identities=15%  Similarity=0.332  Sum_probs=66.4

Q ss_pred             CCCccccCCCe---eeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeE
Q psy7036         111 LAPTFLKKPSI---RQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKY  187 (254)
Q Consensus       111 ~~~~~~~~~~~---~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y  187 (254)
                      .+|.+...+..   ..+.+|+.+.|.|.+.+.+.+ +.|+|++..+.......+.....    ...|.|.+++.+|+|.|
T Consensus         6 ~~P~~~~~p~~~~~~~v~~G~~v~l~C~~~~~p~~-v~W~k~g~~~~~~~~~~~~~~~~----~~~L~I~~~~~~D~G~Y   80 (104)
T 2e6p_A            6 SGPVHILSPQDKVSLTFTTSERVVLTCELSRVDFP-ATWYKDGQKVEESELLVVKMDGR----KHRLILPEAKVQDSGEF   80 (104)
T ss_dssp             SSSCCCCBCCSCEEEEEESSSCEECCEECSSTTCC-CEEEETTEECCCBTTBEEEEETT----EEEEEESSCCTTTCEEE
T ss_pred             CCCCEEECCCCCccEEEeCCCcEEEEEEecCCCCc-cEEeeCCEECCCCCCEEEEeCCC----EEEEEECCCChhhCEEE
Confidence            34555444444   678899999999999999888 99999999887665554443222    13799999999999999


Q ss_pred             EEEEEcCCCcceEEEEEEEec
Q psy7036         188 KVTAKNELGESNATISLNFDS  208 (254)
Q Consensus       188 ~C~~~~~~~~~~~~~~~~v~~  208 (254)
                      +|.+.|..+    .+.|.|..
T Consensus        81 ~C~a~n~~~----~~~l~V~~   97 (104)
T 2e6p_A           81 ECRTEGVSA----FFGVTVQD   97 (104)
T ss_dssp             EEECSSCCC----CEEEEEEC
T ss_pred             EEEECCceE----EEEEEEcC
Confidence            999988633    44555554

>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.48  E-value=1.8e-13  Score=85.12  Aligned_cols=79  Identities=18%  Similarity=0.416  Sum_probs=61.7

Q ss_pred             CceeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcCCCce
Q psy7036          16 QLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGEV   95 (254)
Q Consensus        16 ~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~   95 (254)
                      ....+.+|++++|.|.+. .|.+.+.|+|++..+....++.+...  +   ....|.|.+++..|+|.|+|.+.+    .
T Consensus        19 ~~~~v~~G~~v~L~C~~~-~p~~~v~W~k~g~~~~~~~~~~~~~~--~---~~~~L~I~~~~~~D~G~Y~C~a~~----~   88 (102)
T 2eo1_A           19 REVQAEAGASATLSCEVA-QAQTEVTWYKDGKKLSSSSKVRVEAV--G---CTRRLVVQQAGQAEAGEYSCEAGG----Q   88 (102)
T ss_dssp             EEEEEETTCCEEECCBCS-CSSSCCEEEETTEECCCCSSEEEEEE--T---TEEEEEETTCCTTTCSCEEEEETT----E
T ss_pred             ccEEEeCCCcEEEEEEec-CCCCceEEEECCEECCCCCCEEEEEc--C---CEEEEEECCCCcccCEEEEEEcCC----C
Confidence            345789999999999998 78899999999999877665544322  1   123799999999999999999854    3


Q ss_pred             EEEEEEEEe
Q psy7036          96 AASINLNFS  104 (254)
Q Consensus        96 ~~~~~l~v~  104 (254)
                      ...+.|.|.
T Consensus        89 ~~~~~l~V~   97 (102)
T 2eo1_A           89 QLSFRLQVA   97 (102)
T ss_dssp             ECCEEEEEE
T ss_pred             cEEEEEEEe
Confidence            445677775

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X

Probab=99.48  E-value=3.1e-13  Score=87.00  Aligned_cols=88  Identities=16%  Similarity=0.277  Sum_probs=63.1

Q ss_pred             eeeecCCCeEEEEEEEeeC--CCCeEEEEECCEeccc----CCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcC
Q psy7036         121 IRQEDDGKRLLFECRIQAD--PAPTVIWSHSGVQVKE----DKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNE  194 (254)
Q Consensus       121 ~~~~~~g~~~~l~C~~~~~--~~~~~~W~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~  194 (254)
                      .+.+.+|+.+.|.|.+.+.  +.+.+.|++++..+..    ................+.|.|.+++.+|+|.|+|.|.|.
T Consensus        17 ~v~v~~G~~v~L~C~~~g~p~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~   96 (122)
T 3s35_X           17 GIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSG   96 (122)
T ss_dssp             CEEEEETCCEEEEEEEEECTTCCCEEEEECSCTTCCHHHHBCCSCCEEEETTEEEEEEEEEESSCCGGGCEEEEEEEECS
T ss_pred             CEEEecCCeEEEEEEEEcCCCCcEEEEEECCCcccCCceeeeeccccccCCceeeEEEEEEECCCCcccCEEEEEEEccC
Confidence            3467789999999999984  4568999998874321    111111111111112347999999999999999999999


Q ss_pred             CCcceEEEEEEEec
Q psy7036         195 LGESNATISLNFDS  208 (254)
Q Consensus       195 ~~~~~~~~~~~v~~  208 (254)
                      .|.....+.|.|..
T Consensus        97 ~g~~~~~~~l~V~~  110 (122)
T 3s35_X           97 LMTKKNSTFVRVHE  110 (122)
T ss_dssp             SCEEEEEEEEEEEE
T ss_pred             CCceEEEEEEEEec
Confidence            99988888888875

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.48  E-value=2.5e-13  Score=84.67  Aligned_cols=90  Identities=18%  Similarity=0.248  Sum_probs=69.1

Q ss_pred             CCCccccCCCeeeecCCCeEEEEEEEeeCCC-CeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEE
Q psy7036         111 LAPTFLKKPSIRQEDDGKRLLFECRIQADPA-PTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKV  189 (254)
Q Consensus       111 ~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~-~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C  189 (254)
                      .++.+...+....+.+|+.+.|.|.+.+.+. +.+.|+|++..+....+..+......    ..|.|.+++.+|+|.|+|
T Consensus         7 ~p~~~~~~~~~~~v~~G~~v~l~C~v~~~~~~~~v~W~k~g~~i~~~~r~~~~~~~~~----~~L~I~~v~~~D~G~Y~C   82 (104)
T 2eny_A            7 GHVGITKRLKTMEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQATRQGRK----YILVVREAAPSDAGEVVF   82 (104)
T ss_dssp             CCCCCSBCCCCEEEESSCCEEEEEECSSCCCSSCBCCBSSSSBCSBCSSCEEEEETTE----EEEEECSCCTTTCSCEEE
T ss_pred             CCCEEEecCCCcEEcCCCcEEEEEEEcCCCCCceeEEEECCEECCCCCCEEEEEcCCE----EEEEECCCCHHHCEEEEE
Confidence            4556666677788999999999999988774 47999999998876665554433221    379999999999999999


Q ss_pred             EEEcCCCcceEEEEEEEec
Q psy7036         190 TAKNELGESNATISLNFDS  208 (254)
Q Consensus       190 ~~~~~~~~~~~~~~~~v~~  208 (254)
                      .+.    +...+..|.|..
T Consensus        83 ~a~----~~~~~a~L~V~~   97 (104)
T 2eny_A           83 SVR----GLTSKASLIVRE   97 (104)
T ss_dssp             EET----TEEEEECEEEEC
T ss_pred             EEC----CeeEEEEEEEeC
Confidence            884    355677777764

>2xqy_G A13-D6.3 monoclonal antibody, envelope glycoprotein H; immune system-viral protein complex, envelope protein; HET: NAG; 2.05A {Mus musculus}

Probab=99.48  E-value=8.7e-13  Score=96.33  Aligned_cols=129  Identities=18%  Similarity=0.284  Sum_probs=80.4

Q ss_pred             CCeeeecCCCeEEEEEEEeeCC--CCeEEEEECC--Eecc----cC-----------CcceEEEcCCCCceeeEEEEccC
Q psy7036         119 PSIRQEDDGKRLLFECRIQADP--APTVIWSHSG--VQVK----ED-----------KRHKFSIDKDGHSYFASLEIIDV  179 (254)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~~--~~~~~W~~~~--~~~~----~~-----------~~~~~~~~~~~~~~~~~l~i~~~  179 (254)
                      +....+.+|+.++|.|.+.+.+  .+.+.|+|+.  ..+.    ..           ...++....+.......|.|.++
T Consensus        13 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v   92 (261)
T 2xqy_G           13 PGAELVKPGASVKMSCKASGYSFTSYWMNWVKQRPGRGLEWIGRIDPSDNETHYNQDFKDKVTLTVDKSSSTVYIQLSSL   92 (261)
T ss_dssp             CSEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECSC
T ss_pred             CCCEEEcCCCCEEEEEEeCCcccCCceEEEEEeCCCCCcEEEEEEecCCCceeeCCccCCcEEEEecCCCCEEEEEEcCC
Confidence            4456788999999999998876  5789999863  2110    00           01122221111111247999999


Q ss_pred             CCCCceeEEEEEEcCCCc---ceEEEEEEEecCCCCCCCCCCCCeeecCCccccccCCCCcEEEEEEEecc-CCC-ceeC
Q psy7036         180 TIEDAGKYKVTAKNELGE---SNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLVGE-PEP-TISW  254 (254)
Q Consensus       180 ~~~d~G~y~C~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~l~C~~~~~-p~p-~~~W  254 (254)
                      +.+|+|.|.|.+.+..+.   ......|.|....      ..+|.+...+....+..|+ .+.|.|.+.+. |.| .++|
T Consensus        93 ~~~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~~------~~~P~v~~~~p~~~v~~g~-~v~L~C~~~g~~P~~i~v~W  165 (261)
T 2xqy_G           93 TSEDSAVYYCGRLGYVYGFDYWGQGTTLTVSSAK------TTAPSVYPLAPVCGDTTGS-SVTLGCLVKGYFPEPVTLTW  165 (261)
T ss_dssp             CGGGCEEEEEEEECTTSSEEEECCCEEEEECSSC------CBCCEEEEECCCCC--CCS-EEEEEEEEEEEBSSCCEEEE
T ss_pred             CcccCeEEEEEEecCCCcceEECCCEEEEEccCC------CCCCeEEEeCCCccccCCC-cEEEEEEEEeEeCCCCEEEE
Confidence            999999999999986431   1123456665311      1244444322222456788 99999999985 776 7888

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.48  E-value=2.3e-13  Score=84.11  Aligned_cols=80  Identities=25%  Similarity=0.457  Sum_probs=64.2

Q ss_pred             CeeeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcce
Q psy7036         120 SIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESN  199 (254)
Q Consensus       120 ~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~  199 (254)
                      ....+..|+.+.|.|.+.+.| +.+.|+|++..+.......  .. +.     .|.|.+++.+|.|.|+|.|.|..|...
T Consensus        11 ~~~~v~~G~~v~L~C~~~g~p-p~i~W~k~g~~~~~~~~~~--~~-~~-----~L~i~~v~~~D~G~Y~C~a~n~~g~~~   81 (99)
T 2cr3_A           11 ESFLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLAESNRTR--IT-GE-----EVEVQDSVPADSGLYACVTSSPSGSDT   81 (99)
T ss_dssp             EECCBCTTSCEEEECCCCSSC-CEEEEEESSSBCCCCSSEE--EC-SS-----EEEETTCCTTTCEEEEEEEEETTEEEE
T ss_pred             cCeEEeCCCcEEEEEEecCCC-CeEEEEECCEECCCCCcEE--EE-CC-----EEEEccCCHHHCEEEEEEEEeCCceEE
Confidence            445677899999999998876 7999999998775544322  22 22     799999999999999999999999887


Q ss_pred             EEEEEEEec
Q psy7036         200 ATISLNFDS  208 (254)
Q Consensus       200 ~~~~~~v~~  208 (254)
                      ..+.|.|..
T Consensus        82 ~~~~l~V~~   90 (99)
T 2cr3_A           82 TYFSVNVSD   90 (99)
T ss_dssp             EEEEECBCS
T ss_pred             EEEEEEEec
Confidence            777777654

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A

Probab=99.48  E-value=9.3e-14  Score=95.70  Aligned_cols=114  Identities=15%  Similarity=0.342  Sum_probs=80.3

Q ss_pred             CeeeecCCCeEEEEEEEe--eCCCCeEEEEE--CCEeccc--------CCcceEEEcCCCCceeeEEEEccCCCCCceeE
Q psy7036         120 SIRQEDDGKRLLFECRIQ--ADPAPTVIWSH--SGVQVKE--------DKRHKFSIDKDGHSYFASLEIIDVTIEDAGKY  187 (254)
Q Consensus       120 ~~~~~~~g~~~~l~C~~~--~~~~~~~~W~~--~~~~~~~--------~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y  187 (254)
                      ..+....|++++|.|...  +.+.+.+.|++  ++..+..        ....++....++     +|.|.+++.+|+|.|
T Consensus         7 ~~v~g~~G~sv~L~~~~~~~~~~~~~i~W~k~~~~~~i~~~~~~~~~~~~~~R~~~~~ng-----sL~I~~v~~~DsG~Y   81 (182)
T 1hnf_A            7 LETWGALGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNG-----TLKIKHLKTDDQDIY   81 (182)
T ss_dssp             EEEEEETTSCEEECCTTCCCCSSEEEEEEEEGGGCCEEEEECGGGCEEESCTTEEECTTS-----CEEECSCCGGGCEEE
T ss_pred             cEEEEecCCCEEEeCCcccccCcCCEEEEEECCCCcEEEEEeCccCCCCCCCeEEECCCC-----CEEECCCChhhCEEE
Confidence            445677899999999542  24456899999  8776521        012233344454     799999999999999


Q ss_pred             EEEEEcCCCcce--EEEEEEEecCCCCCCCCCCCCeeecCCccccccCCCCcEEEEEEEeccCCCceeC
Q psy7036         188 KVTAKNELGESN--ATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLVGEPEPTISW  254 (254)
Q Consensus       188 ~C~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~l~C~~~~~p~p~~~W  254 (254)
                      +|.+.|..|...  ..+.|.|...       ...|.+..        .+. .+.|.|.+.+.|.|.++|
T Consensus        82 ~c~~~n~~g~~~~~~~~~L~V~~~-------~~~P~i~~--------~~~-~v~L~C~~~~~p~~~~~W  134 (182)
T 1hnf_A           82 KVSIYDTKGKNVLEKIFDLKIQER-------VSKPKISW--------TCI-NTTLTCEVMNGTDPELNL  134 (182)
T ss_dssp             EEEEEETTSCEEEEEEEEEEEECC-------CCCCEEEE--------ETT-TTEEEEECSSCSSCEEEE
T ss_pred             EEEEEeCCCceeEEEEEEEEEcCc-------CCCCEEEE--------ccC-cEEEEeEccCCCCCEEEE
Confidence            999999888653  4566777631       12344433        234 689999999999999998

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.48  E-value=2e-13  Score=85.51  Aligned_cols=90  Identities=24%  Similarity=0.341  Sum_probs=68.3

Q ss_pred             CCCccccCCCeeeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEE
Q psy7036         111 LAPTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVT  190 (254)
Q Consensus       111 ~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~  190 (254)
                      .+|.+...+....+..|+.+.|.|.+.+.+.+ +.|+|++..+....+..+.....    ...|.|.+++.+|+|.|+|.
T Consensus         7 ~~p~~~~~~~~~~v~~G~~v~l~C~~~~~~~~-v~W~k~g~~~~~~~~~~~~~~~~----~~~L~I~~v~~~D~G~Y~C~   81 (106)
T 2dlt_A            7 GQLEVLQDIADLTVKAAEQAVFKCEVSDEKVT-GKWYKNGVEVRPSKRITISHVGR----FHKLVIDDVRPEDEGDYTFV   81 (106)
T ss_dssp             CCCCEEECCCCEEEESSCCEECCCEESCSSCE-EEEEESSCBCCCCSSCEEEEETT----EEEEEESSCCTTTCSCEEEE
T ss_pred             CCCEEecCCCCeEEeCCCeEEEEEEEcCCCcc-eEEEcCCEECcCCCCEEEEEeCC----EEEEEECCCCcCCCEEEEEE
Confidence            45666666777889999999999999888777 99999999887665554443221    13799999999999999999


Q ss_pred             EEcCCCcceEEEEEEEe
Q psy7036         191 AKNELGESNATISLNFD  207 (254)
Q Consensus       191 ~~~~~~~~~~~~~~~v~  207 (254)
                      +.|..  ...+..|.|.
T Consensus        82 a~n~~--~~~~~~l~V~   96 (106)
T 2dlt_A           82 PDGYA--LSLSAKLNFL   96 (106)
T ss_dssp             EETSC--CCCCBCEEEE
T ss_pred             EccCC--ceEEEEEEEE
Confidence            99983  3334444444

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.48  E-value=2e-13  Score=85.05  Aligned_cols=89  Identities=18%  Similarity=0.340  Sum_probs=69.0

Q ss_pred             CCCccccCCCeeeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEE
Q psy7036         111 LAPTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVT  190 (254)
Q Consensus       111 ~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~  190 (254)
                      .+|.+...+....+..|+.+.|.|.+.+ +.+.+.|+|++..+.......+.....    .+.|.|.+++.+|+|.|+|.
T Consensus         7 ~pp~~~~~~~~~~v~~G~~v~l~C~~~~-~~~~v~W~k~g~~~~~~~~~~~~~~~~----~~~L~I~~v~~~D~G~Y~C~   81 (103)
T 2edf_A            7 GPAAIIKPLEDQWVAPGEDVELRCELSR-AGTPVHWLKDRKAIRKSQKYDVVCEGT----MAMLVIRGASLKDAGEYTCE   81 (103)
T ss_dssp             CCCCEEECCCCEEECTTSCEEECCEESS-SSCCCCEEESSCBCCCSSSEEEEEETT----EEEEEESSCCTTTCSEEEEE
T ss_pred             CCcEEEecCCccEEcCCCCEEEEEEEeC-CCCcEEEEECCEEccCCCCEEEEECCC----EEEEEECCCCcccCEEEEEE
Confidence            4566666667788899999999999986 778899999998887655544433222    24799999999999999999


Q ss_pred             EEcCCCcceEEEEEEEec
Q psy7036         191 AKNELGESNATISLNFDS  208 (254)
Q Consensus       191 ~~~~~~~~~~~~~~~v~~  208 (254)
                      +.|    ...++.|.|..
T Consensus        82 a~n----~~~~~~l~V~~   95 (103)
T 2edf_A           82 VEA----SKSTASLHVEE   95 (103)
T ss_dssp             CSS----CEEEEEEEECC
T ss_pred             Ecc----CCcEEEEEEeC
Confidence            988    35666677664

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens}

Probab=99.48  E-value=8.6e-13  Score=80.86  Aligned_cols=87  Identities=23%  Similarity=0.396  Sum_probs=66.5

Q ss_pred             CCccccCCCeeeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEE
Q psy7036         112 APTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTA  191 (254)
Q Consensus       112 ~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~  191 (254)
                      .+.+...+....+..|+.+.|.|.+ +.+.+.+.|+|++..+.......+.....    ...|.|.+++.+|+|.|+|.+
T Consensus         8 ~~~~~~~~~~~~v~~G~~v~l~C~~-~~p~~~v~W~k~~~~l~~~~~~~~~~~~~----~~~L~I~~v~~~D~G~Y~C~a   82 (95)
T 2k1m_A            8 VSAFSKKPRSVEVAAGSPAVFEAET-ERAGVKVRWQRGGSDISASNKYGLATEGT----RHTLTVREVGPADQGSYAVIA   82 (95)
T ss_dssp             CCCCSBCCCCEEEETTSCEEEEEEC-SSSSCCCEEECSSSEECSSTTCEEEEETT----EEEEEESSCCTTCCSEEEEEE
T ss_pred             CCeeEeCCCcEEEeCCCcEEEEEEe-CCCCCeEEEEECCEECCCCCcEEEEEcCC----EEEEEEcCCCcccCEEEEEEE
Confidence            3455556667788999999999999 78888999999999887665544433222    137999999999999999999


Q ss_pred             EcCCCcceEEEEEEEe
Q psy7036         192 KNELGESNATISLNFD  207 (254)
Q Consensus       192 ~~~~~~~~~~~~~~v~  207 (254)
                          |....+..|.|.
T Consensus        83 ----g~~~~~~~l~V~   94 (95)
T 2k1m_A           83 ----GSSKVKFDLKVI   94 (95)
T ss_dssp             ----TTEEEEEEEEEE
T ss_pred             ----CCceEEEEEEEe
Confidence                555566666653

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens}

Probab=99.47  E-value=5.7e-13  Score=94.52  Aligned_cols=94  Identities=22%  Similarity=0.365  Sum_probs=72.9

Q ss_pred             CCccccCCCeeeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEE
Q psy7036         112 APTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTA  191 (254)
Q Consensus       112 ~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~  191 (254)
                      +|.+ ..+....+..|+.+.|.|.+.+.|.+.+.|+|++..+......++.......  .+.|.|.++..+|.|.|+|.|
T Consensus        19 ~P~~-~~p~~~~~~~G~~v~l~C~~~g~p~p~i~W~~~g~~l~~~~~~~~~~~~~~~--~~~L~i~~~~~~d~G~Y~C~a   95 (215)
T 3mtr_A           19 APKL-QGPVAVYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNIKIYNTPS--ASYLEVTPDSENDFGNYNCTA   95 (215)
T ss_dssp             EEEE-ECCSEEEECTTCCEEEEEEEEEESCCEEEEEETTEESSCSSSCSEEEEEETT--EEEEEECCCSGGGCEEEEEEE
T ss_pred             CCcc-cCCceEEEECCCCEEEEEEEeecCCCEEEEEECCeECCCCCCccEEEecCCC--eeEEEEecCChhhCeEEEEEE
Confidence            4444 3445577889999999999999999999999999988765432332221111  248999999999999999999


Q ss_pred             EcCCCcceEEEEEEEec
Q psy7036         192 KNELGESNATISLNFDS  208 (254)
Q Consensus       192 ~~~~~~~~~~~~~~v~~  208 (254)
                      .|..|.....+.+.+..
T Consensus        96 ~n~~g~~~~~~~l~v~~  112 (215)
T 3mtr_A           96 VNRIGQESLEFILVQAD  112 (215)
T ss_dssp             ECSSCEEEEEEEEEECC
T ss_pred             EECCCceEEEEEEEECC
Confidence            99999888888887764

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens}

Probab=99.47  E-value=1.3e-13  Score=88.12  Aligned_cols=97  Identities=26%  Similarity=0.444  Sum_probs=68.3

Q ss_pred             CCCccccCCCeeeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCc---ceEEEcCCCCceeeEEEEccCCCCCceeE
Q psy7036         111 LAPTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKR---HKFSIDKDGHSYFASLEIIDVTIEDAGKY  187 (254)
Q Consensus       111 ~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~i~~~~~~d~G~y  187 (254)
                      .+|.+...+....+..|+.+.|.|.+.+.|.|.+.|++++..+.....   .......++......+.+.+++.+|.|.|
T Consensus         8 ~pP~i~~~p~~~~v~~G~~v~L~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~D~G~Y   87 (117)
T 2v9t_A            8 FPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGVY   87 (117)
T ss_dssp             EEEEEEECCCCEEECTTCCEEECCEEEEESCCEEEEEETTEECCCTTTCSSCSEEECTTSCEEESSCCCBTTBCSSCEEE
T ss_pred             CCCeeEcCCCCEEEcCCCcEEEEEECCccCCCeEEEEECCEeccccCCCCcceeEEecCCcEEEEEEEeCCCCcCcCEEE
Confidence            455555556677788999999999999999999999999988764421   12223334432222233336678999999


Q ss_pred             EEEEEcCCCcce-EEEEEEEe
Q psy7036         188 KVTAKNELGESN-ATISLNFD  207 (254)
Q Consensus       188 ~C~~~~~~~~~~-~~~~~~v~  207 (254)
                      +|.|.|..|... ..+.+.+.
T Consensus        88 ~C~a~N~~G~~~s~~~~l~~~  108 (117)
T 2v9t_A           88 VCVARNYLGEAVSHDASLEVA  108 (117)
T ss_dssp             EEEEEETTEEEECCCEEEEEC
T ss_pred             EEEEEeCccceEeeeEEEEhh
Confidence            999999999763 45666654

>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.47  E-value=2e-13  Score=98.48  Aligned_cols=126  Identities=14%  Similarity=0.125  Sum_probs=83.8

Q ss_pred             CCccccCCCeeeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEE
Q psy7036         112 APTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTA  191 (254)
Q Consensus       112 ~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~  191 (254)
                      +|.+...+.. .+.+|+.++|.|.+.+ +...+.|+|++..+.......     ........|.|.+++.+|+|.|+|.+
T Consensus         7 kP~i~~~P~~-~v~~G~~VtL~C~~~~-~~~~~~w~k~g~~~~~~~~~~-----~~~~~~~~L~I~~v~~~DsG~Y~C~~   79 (242)
T 1p6f_A            7 KPFIWAEPHF-MVPKEKQVTICCQGNY-GAVEYQLHFEGSLFAVDRPKP-----PERINKVKFYIPDMNSRMAGQYSCIY   79 (242)
T ss_dssp             CCEEEEESCS-EEETTCCEEEEEECCT-TCCEEEEEETTEEEEEECCSS-----CTTCCEEEEEECSCCGGGCEEEEEEE
T ss_pred             CCEEEeeCCC-ccCCCCcEEEEEeeCC-CCcEEEEEECCCccccccccc-----cCCcceeEEEecCCCcccCeEEEEEE
Confidence            3444444444 6788999999999864 456899999997754211000     00111247999999999999999999


Q ss_pred             EcCCCc--ceEEEEEEEecCCCCCCCCCCCCeeecCCccccccCCCCcEEEEEEEeccCCCceeC
Q psy7036         192 KNELGE--SNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLVGEPEPTISW  254 (254)
Q Consensus       192 ~~~~~~--~~~~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~l~C~~~~~p~p~~~W  254 (254)
                      .+..+.  .+..+.|.|...       ...|.+...+. ..+.+|+ .++|.|.+.+.+ +.+.|
T Consensus        80 ~~~~~~s~~S~~~~L~V~~~-------~~~P~i~~~p~-~~v~~G~-~vtL~C~~~~~~-~~~~w  134 (242)
T 1p6f_A           80 RVGELWSEPSNLLDLVVTEM-------YDTPTLSVHPG-PEVISGE-KVTFYCRLDTAT-SMFLL  134 (242)
T ss_dssp             EETTEECCCCCCEEEEEECC-------SCCCEEEEESC-SEEETTC-EEEEEEECTTSC-SEEEE
T ss_pred             ecCCccccCCcceEEEeecc-------cCCCceEccCC-CccCCCC-cEEEEEecCCCC-CEEEE
Confidence            886442  244566666531       12566665553 3577899 999999987643 46666

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A

Probab=99.46  E-value=1.1e-12  Score=81.19  Aligned_cols=89  Identities=26%  Similarity=0.373  Sum_probs=67.4

Q ss_pred             CCCccccCCCe-eeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEE
Q psy7036         111 LAPTFLKKPSI-RQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKV  189 (254)
Q Consensus       111 ~~~~~~~~~~~-~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C  189 (254)
                      .+|.+...+.. ..+..|+.+.|.|.+. .|.+.+.|+|++..+.......+.....  .  ..|.|.++..+|+|.|+|
T Consensus         6 ~~p~~~~~~~~~~~v~~G~~v~l~C~~~-~p~~~v~W~k~g~~i~~~~~~~~~~~~~--~--~~L~I~~~~~~D~G~Y~C   80 (100)
T 2yuv_A            6 SGAAFAKILDPAYQVDKGGRVRFVVELA-DPKLEVKWYKNGQEIRPSTKYIFEHKGC--Q--RILFINNCQMTDDSEYYV   80 (100)
T ss_dssp             SSCCEEECCCSCEEECTTEEEEEEEEES-CTTSCEEEEESSCBCCCBTTEEEEEETT--E--EEEEEEEECTTTCCEEEE
T ss_pred             CCCeEEecCCCccEEcCCCcEEEEEEec-CCCceEEEEECCEECCCCCCEEEEecCC--E--EEEEEcCCCcCcCEEEEE
Confidence            35555545554 5778999999999997 7888999999999887655544433222  1  279999999999999999


Q ss_pred             EEEcCCCcceEEEEEEEec
Q psy7036         190 TAKNELGESNATISLNFDS  208 (254)
Q Consensus       190 ~~~~~~~~~~~~~~~~v~~  208 (254)
                      .|    +....+..|.|..
T Consensus        81 ~a----g~~~~~~~l~V~~   95 (100)
T 2yuv_A           81 TA----GDEKCSTELFVRS   95 (100)
T ss_dssp             EE----TTEEEEEEEEECC
T ss_pred             EE----CCceEEEEEEEec
Confidence            99    6667777777764

>3ux9_B SCFV antibody; five helices, long loop connecting helix, hydrophobic intera cytokine-immune system complex; 2.80A {Homo sapiens}

Probab=99.46  E-value=4.1e-13  Score=97.86  Aligned_cols=132  Identities=18%  Similarity=0.255  Sum_probs=80.7

Q ss_pred             CCeeeecCCCeEEEEEEEeeC--CCCeEEEEECC--Eec---cc-C------CcceEEEcCCCCceeeEEEEccCCCCCc
Q psy7036         119 PSIRQEDDGKRLLFECRIQAD--PAPTVIWSHSG--VQV---KE-D------KRHKFSIDKDGHSYFASLEIIDVTIEDA  184 (254)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~--~~~~~~W~~~~--~~~---~~-~------~~~~~~~~~~~~~~~~~l~i~~~~~~d~  184 (254)
                      +....+.+|+.++|.|.+.+.  +.+.+.|+|+.  ...   .. .      ...++....++  ....|.|.+++.+|+
T Consensus         9 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~--~~~~L~I~~v~~~Ds   86 (256)
T 3ux9_B            9 PPSVSGAPGQRVTISCSGSSSNIGSNYVSWYQQLPGTAPKLLIYDNNQRPSGVPDRFSGSKSG--TSASLAITGLQSEDE   86 (256)
T ss_dssp             CSEEEECTTCCEEEEEECCTTTTTTSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEET--TEEEEEECSCCGGGC
T ss_pred             CCcEEEcCCCcEEEEEecCCCCCCCceEEEEEECCCCCCEEEEEecCCCCCCcCCcEEEEccC--CEEEEEECCCChhhC
Confidence            345678899999999999876  67889999852  111   00 0      01112221111  123799999999999


Q ss_pred             eeEEEEEEcCCCc---ceEEEEEEEecCCCCCC-----------CCCCCCeeecCCccccccCCCCcEEEEEEEeccC--
Q psy7036         185 GKYKVTAKNELGE---SNATISLNFDSDDAPVP-----------GEGTKPVFTERPVTKQSDDDLNDIVIECRLVGEP--  248 (254)
Q Consensus       185 G~y~C~~~~~~~~---~~~~~~~~v~~~~~~~~-----------~~~~~p~~~~~~~~~~~~~g~~~~~l~C~~~~~p--  248 (254)
                      |.|.|.+.+..+.   ......|.|.......+           .....+.+...+ ...+.+|+ .++|.|.+.+.|  
T Consensus        87 G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~G~-~v~L~C~~~~~~~~  164 (256)
T 3ux9_B           87 ADYYCQVRDNNENEWVFGGGTKLTVLGSGGSTITSYNVYYTKLSSSGSEVQLVESG-GGLVQPGG-SLRLSCAASGFTFS  164 (256)
T ss_dssp             EEEEEEEEETTTTEEEECCCEEEEEC----------------------CCEEEEEC-CEEECTTC-CEEEEEEEESSCGG
T ss_pred             EEEEEEEEECCCCceEECCCEEEEEECCCCCcCccceeEEeecCCCccceeEEcCC-CeEEcCCC-eEEEEEEEeCCccc
Confidence            9999999986542   22334566654221100           000122344333 33578899 999999999876  


Q ss_pred             CCceeC
Q psy7036         249 EPTISW  254 (254)
Q Consensus       249 ~p~~~W  254 (254)
                      .+.+.|
T Consensus       165 ~~~v~W  170 (256)
T 3ux9_B          165 SYAMSW  170 (256)
T ss_dssp             GSEEEE
T ss_pred             ccEEEE
Confidence            577888

>3c6l_A TCR 2W20 alpha chain; TCR-PMHC complex; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.19  E-value=5.1e-15  Score=101.77  Aligned_cols=134  Identities=16%  Similarity=0.147  Sum_probs=81.5

Q ss_pred             eEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeCCE--E---e-e--------eCCcceEEEeecCCcceEEEEEEecc
Q psy7036          11 FTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGET--Q---L-S--------EDTRTVMKTTPIGTNKYLVALELDDV   76 (254)
Q Consensus        11 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~--~---~-~--------~~~~~~~~~~~~~~~~~~~~l~i~~~   76 (254)
                      +++.|..+.+.+|++++|.|.+.+.+...+.|||...  .   + .        ...++.+...   .......|.|.++
T Consensus         3 v~Q~p~~v~v~~G~svtL~C~~s~~~~~~v~Wyrq~~g~~~~~li~~~~~~~~~~~~R~s~~~~---~~~~~~sL~I~~v   79 (185)
T 3c6l_A            3 VRQSPQSLTVWEGETAILNCSYEDSTFDYFPWYHQFPGESPALLIAIRPVSNKKEDGRFTIFFN---KREKKFSLHIADS   79 (185)
Confidence            4566778889999999999999765556899998541  1   1 0        0112211111   1123447999999


Q ss_pred             CCCCCeEEEEEEEcCCCceEEEEEEEEeccccCCCCCccccCCCeeeecCCCeEEEEEEEee-CCCCeEEEEECCEec
Q psy7036          77 IETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQA-DPAPTVIWSHSGVQV  153 (254)
Q Consensus        77 ~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~~~~~~~W~~~~~~~  153 (254)
                      +.+|+|.|.|.+.+..........|.|...... ..|.+.....     ..+.++|.|.+.+ +|.+.+.|+.+....
T Consensus        80 ~~~DsG~Y~C~~~~~~~~fg~gT~L~V~~~~~~-~~P~V~~~~~-----~~~~vtL~C~~~gf~P~p~v~~~~~~~~~  151 (185)
T 3c6l_A           80 QPGDSATYFCAASDNRIFFGDGTQLVVKPNIQN-PEPAVYQLKD-----PRSQDSTLCLFTDFDSQINVPKTMESGTF  151 (185)
Confidence            999999999998752111112345555431110 1122221111     1226899999988 678899998766544

>1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen complex, HIV inhibiting antibody; 1.89A {Mus musculus} PDB: 1jp5_A

Probab=99.46  E-value=6.1e-13  Score=96.45  Aligned_cols=132  Identities=16%  Similarity=0.224  Sum_probs=80.4

Q ss_pred             CCeeeecCCCeEEEEEEEeeCC-----CCeEEEEECC--Ee---cccC-------CcceEEEcCCCCceeeEEEEccCCC
Q psy7036         119 PSIRQEDDGKRLLFECRIQADP-----APTVIWSHSG--VQ---VKED-------KRHKFSIDKDGHSYFASLEIIDVTI  181 (254)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~~-----~~~~~W~~~~--~~---~~~~-------~~~~~~~~~~~~~~~~~l~i~~~~~  181 (254)
                      +..+.+.+|+.++|.|.+.+.+     .+.+.|+|+.  ..   +...       ...++....++  ....|.|.+++.
T Consensus         8 p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~--~~~~L~I~~v~~   85 (247)
T 1svz_A            8 PLYLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSG--TDFTLKISRVEA   85 (247)
T ss_dssp             CSEEEECTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEET--TEEEEEESSCCG
T ss_pred             CCeEEecCCCCEEEEEeCCCcccccCCCceEEEEEECCCCCceEEEEEecccCCCCCCcEEeccCC--CEEEEEECCCCH
Confidence            4566788999999999998887     6789999853  11   1000       01112211111  123799999999


Q ss_pred             CCceeEEEEEEcCCCc-ceEEEEEEEecCCCC---CCCCCCC-CeeecCCccccccCCCCcEEEEEEEeccC--CCceeC
Q psy7036         182 EDAGKYKVTAKNELGE-SNATISLNFDSDDAP---VPGEGTK-PVFTERPVTKQSDDDLNDIVIECRLVGEP--EPTISW  254 (254)
Q Consensus       182 ~d~G~y~C~~~~~~~~-~~~~~~~~v~~~~~~---~~~~~~~-p~~~~~~~~~~~~~g~~~~~l~C~~~~~p--~p~~~W  254 (254)
                      +|+|.|.|.+.|..+. ......|.|......   ......+ +.+...+. ..+.+|+ .++|.|.+.+.|  .+.+.|
T Consensus        86 ~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~G~-~v~L~C~~~~~~~~~~~v~W  163 (247)
T 1svz_A           86 EDLGIYYCFQGSHFPPTFGGGTKLEIKGGGGSGGGGSGGGGSEVQLQQSGP-ELKKPGE-TVKISCKATNYAFTDYSMHW  163 (247)
T ss_dssp             GGCEEEEEEECSSSSCEECCCEEEEEC---------------CCEEEECCC-EEECTTC-CEEEEEEEESSCGGGSCEEE
T ss_pred             HHCEEEEEEEccCCccEECCCEEEEEECCccccccccccccCceEEeCCCc-eeecCCC-cEEEEEEEcCcccCCcEEEE
Confidence            9999999999987553 223345666542110   0000012 23333333 3588899 999999999875  467888

>3bn9_D E2 FAB heavy chain; antibody-protease complex, protein-protein complex, enzyme- inhibitor complex, disease mutation, glycoprotein, hydrolase; 2.17A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 3kr3_H 2xtj_E

Probab=99.46  E-value=4.1e-13  Score=97.77  Aligned_cols=127  Identities=17%  Similarity=0.243  Sum_probs=73.0

Q ss_pred             eeeecCCCeEEEEEEEeeCC--CCeEEEEECC--Eecc----c-----------CCcceEEEcCCCCceeeEEEEccCCC
Q psy7036         121 IRQEDDGKRLLFECRIQADP--APTVIWSHSG--VQVK----E-----------DKRHKFSIDKDGHSYFASLEIIDVTI  181 (254)
Q Consensus       121 ~~~~~~g~~~~l~C~~~~~~--~~~~~W~~~~--~~~~----~-----------~~~~~~~~~~~~~~~~~~l~i~~~~~  181 (254)
                      ...+.+|+.++|.|.+.+.+  .+.+.|+|..  ..+.    .           ....++....+.......|.|.+++.
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~   88 (257)
T 3bn9_D            9 GGLVKPGGSLRLSCAASGFTFSSYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMSSLRA   88 (257)
T ss_dssp             CEEECTTCEEEEEEEEESSCGGGCCEEEEEECTTSCEEEEEEECSSSCCEEECGGGTTTEEEEEETTTTEEEEEEESCCG
T ss_pred             CEEEcCCCcEEEEEEeccccCCCceEEEEEECCCCCeEEEEEEecCCCceecCcccCCceEEEecCCCCEEEEEECCCCh
Confidence            35678899999999998765  5789999853  1110    0           00112222211111124799999999


Q ss_pred             CCceeEEEEEEcCCCc-------------ceEEEEEEEecCCCCCCCCCCCCeeecCCccccccCCCCcEEEEEEEecc-
Q psy7036         182 EDAGKYKVTAKNELGE-------------SNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLVGE-  247 (254)
Q Consensus       182 ~d~G~y~C~~~~~~~~-------------~~~~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~l~C~~~~~-  247 (254)
                      +|+|.|.|.+.+..+.             ......|.|....      ..+|.+...+....+..|+ .+.|.|.+.|. 
T Consensus        89 ~DsG~Y~C~~~~~~g~~~~~~~~~~~~~~~~~~t~L~V~~~~------~~~P~v~~~~p~~~~~~g~-~v~L~C~~~g~~  161 (257)
T 3bn9_D           89 EDTAVYYCARPYLTYPQRRGPQNVSPFDNWGQGTMVTVSSAS------TKGPSVFPLAPSSKSTSGG-TAALGCLVKDYF  161 (257)
T ss_dssp             GGCEEEEEEEECCSSTTSCCCCTTCCEEEECCCEEEEECSSC------CBCCEECCCCC------------CCCEEEEEB
T ss_pred             hhCEEEEEEEecCCCcccccccccceeeeeCCcEEEEecCCC------CcCCcEEEecCcccccCCC-cEEEEEEEeeEE
Confidence            9999999999987641             1123456665311      1245554332222356788 99999999986 


Q ss_pred             CCC-ceeC
Q psy7036         248 PEP-TISW  254 (254)
Q Consensus       248 p~p-~~~W  254 (254)
                      |.| .++|
T Consensus       162 P~pi~v~W  169 (257)
T 3bn9_D          162 PEPVTVSW  169 (257)
T ss_dssp             SSCCEEEE
T ss_pred             CCCcEEEE
Confidence            877 7988

>1hxm_B Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=99.46  E-value=1.2e-12  Score=94.63  Aligned_cols=134  Identities=17%  Similarity=0.195  Sum_probs=80.8

Q ss_pred             CCCeeeecCCCeEEEEEEEeeC--CCCeEEEEECC--Ee---cc-cC-----------CcceEEEcCCCCceeeEEEEcc
Q psy7036         118 KPSIRQEDDGKRLLFECRIQAD--PAPTVIWSHSG--VQ---VK-ED-----------KRHKFSIDKDGHSYFASLEIID  178 (254)
Q Consensus       118 ~~~~~~~~~g~~~~l~C~~~~~--~~~~~~W~~~~--~~---~~-~~-----------~~~~~~~~~~~~~~~~~l~i~~  178 (254)
                      .+..+.+.+|+.++|.|.+.+.  +.+.+.|+|..  ..   +. ..           ...++....+.......|.|.+
T Consensus         7 ~p~~v~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~   86 (242)
T 1hxm_B            7 PQISSTKTLSKTARLECVVSGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPETSTSTLTIHN   86 (242)
T ss_dssp             CCSEEEEETTCCEEEEEEEESSCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETTTTEEEEEECS
T ss_pred             CCceEEecCCCcEEEEEEeCCccccCceEEEEEeCCCCCcEEEEEEecCCceecCCcccCCeEEEEecCCCcEEEEEECC
Confidence            4456778899999999999875  56789999853  11   10 00           1122222211111234799999


Q ss_pred             CCCCCceeEEEEEEcCCC-c------ceEEEEEEEecCCCCCCCCCCCCeeecCCccccccCCCCcEEEEEEEecc-CC-
Q psy7036         179 VTIEDAGKYKVTAKNELG-E------SNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLVGE-PE-  249 (254)
Q Consensus       179 ~~~~d~G~y~C~~~~~~~-~------~~~~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~l~C~~~~~-p~-  249 (254)
                      ++.+|+|.|.|.+.+... .      ......|.|.......... ..+.+. .+....+..|+ .+.|.|.+.|. |. 
T Consensus        87 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~-p~~~v~-~p~~~~~~~g~-~v~L~C~~~g~~P~~  163 (242)
T 1hxm_B           87 VEKQDIATYYCALWEAQQELGKKIKVFGPGTKLIITDKQLDADVS-PKPTIF-LPSIAETKLQK-AGTYLCLLEKFFPDV  163 (242)
T ss_dssp             CCGGGCEEEEEEEEEECSSTTCEEEEECCCEEEEEESSCCCSCCS-CBCCCC-CCCGGGGGSSS-CEEEEEEEEEESSCC
T ss_pred             CCcccCEEEEEeeecCCccccccceeEcCcEEEEEcccccCCCcC-CCceEE-CCChhhcccCC-CceEEEEEeeEECCC
Confidence            999999999999998631 1      1123456665421100000 011222 24444556788 99999999987 65 


Q ss_pred             CceeC
Q psy7036         250 PTISW  254 (254)
Q Consensus       250 p~~~W  254 (254)
                      +.++|
T Consensus       164 ~~v~W  168 (242)
T 1hxm_B          164 IKIHW  168 (242)
T ss_dssp             EEEEE
T ss_pred             eEEEE
Confidence            67888

>3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex, immunoglobulin fold, immune receptor, membr immune system; HET: NAG; 2.55A {Homo sapiens}

Probab=99.45  E-value=9.9e-13  Score=96.53  Aligned_cols=133  Identities=15%  Similarity=0.209  Sum_probs=82.3

Q ss_pred             cccCCCeeeecCCCeEEEEEEEeeCCCCeEEEEEC--CEec------------ccC-Cc-ceEEEcCCCCceeeEEEEcc
Q psy7036         115 FLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHS--GVQV------------KED-KR-HKFSIDKDGHSYFASLEIID  178 (254)
Q Consensus       115 ~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~--~~~~------------~~~-~~-~~~~~~~~~~~~~~~l~i~~  178 (254)
                      +...+..+.+..|+.++|.|.+. .+.+.+.|+|.  +...            ... .. .++....+. .....|.|.+
T Consensus        29 v~~~p~~v~v~~G~~v~L~C~~~-~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~-~~~~sL~I~~  106 (268)
T 3pl6_D           29 VSQTPSNKVTEKGKYVELRCDPI-SGHTALYWYRQSLGQGPEFLIYFQGTGAADDSGLPNDRFFAVRPE-GSVSTLKIQR  106 (268)
T ss_dssp             CBCCCSEEEEETTCCEEEEEBCB-TTCCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEECTT-SSSEEEEECS
T ss_pred             eEeCCCEEEecCCCCEEEEEEeC-CCCceEEEEEECCCCCcEEEEEECCCCccccCCCccCcEEEEecC-CCEEEEEECC
Confidence            34455667788999999999975 56778999982  2111            000 00 122222211 1124799999


Q ss_pred             CCCCCceeEEEEEEcC--CCcceEEEEEEEecCCCCCCCCCCCCeee-cCCccccccCCCCcEEEEEEEeccCCC--cee
Q psy7036         179 VTIEDAGKYKVTAKNE--LGESNATISLNFDSDDAPVPGEGTKPVFT-ERPVTKQSDDDLNDIVIECRLVGEPEP--TIS  253 (254)
Q Consensus       179 ~~~~d~G~y~C~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~p~~~-~~~~~~~~~~g~~~~~l~C~~~~~p~p--~~~  253 (254)
                      ++.+|+|.|+|.+.+.  .........+.|.....    ...+|.+. ..+....+..|+ .+.|.|.+.|.|++  .++
T Consensus       107 v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~~~----~~~~P~v~~~~~~~~~~~~g~-~v~L~C~~~g~~p~~~~v~  181 (268)
T 3pl6_D          107 TERGDSAVYLCATSALGDTQYFGPGTRLTVLEDLK----NVFPPEVAVFEPSEAEISHTQ-KATLVCLATGFYPDHVELS  181 (268)
T ss_dssp             CCGGGCEEEEEEEESSSSSCEECCCEEEEEESCGG----GCBCCEEEEECCCHHHHHHHS-EEEEEEEEEEEBSSCEEEE
T ss_pred             CCcccCEEEEEEEecCCCceeeCCcEEEEEecCcc----cccCCceEEeCCCcccccCCC-ceEEEEEECcccCCCeEEE
Confidence            9999999999999984  22233344455553110    11244433 334444556688 99999999986554  788


Q ss_pred             C
Q psy7036         254 W  254 (254)
Q Consensus       254 W  254 (254)
                      |
T Consensus       182 W  182 (268)
T 3pl6_D          182 W  182 (268)
T ss_dssp             E
T ss_pred             E
Confidence            8

>4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain, human constant...; natural killer T cell receptor, immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B 4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B 3qjh_B 3qiw_D* 3qiu_D

Probab=99.45  E-value=1.3e-12  Score=94.63  Aligned_cols=132  Identities=19%  Similarity=0.283  Sum_probs=81.3

Q ss_pred             ccCCCeeeecCCCeEEEEEEEeeCCCCeEEEEEC--------------CEecccCC-c-ceEEEcCCCCceeeEEEEccC
Q psy7036         116 LKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHS--------------GVQVKEDK-R-HKFSIDKDGHSYFASLEIIDV  179 (254)
Q Consensus       116 ~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~--------------~~~~~~~~-~-~~~~~~~~~~~~~~~l~i~~~  179 (254)
                      ...+..+.+.+|+.+.|.| ..+.+.+.+.|+|.              +....... . .++....+. .....|.|.++
T Consensus         6 ~~~p~~v~v~~G~~v~L~C-~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~-~~~~sL~I~~v   83 (245)
T 4ei6_B            6 LQIPSHQIIDMGQMVTLNC-DPVSNHLYFYWYKQILGQQMEFLVNFYNGKVMEKSKLFKDQFSVERPD-GSYFTLKIQPT   83 (245)
T ss_dssp             EEECSEEEEETTCCEEEEE-ECCTTCCEEEEEEEETTTEEEEEEEEETTEEEEECTTCCTTEEEECCT-TSCEEEEECSC
T ss_pred             EeCCceEEecCCCCEEEEE-EcCCCCCEEEEEEECCCCCcEEEEEECCCceeccCCCccCCEEEEecc-CceEEEEECCC
Confidence            3344567788999999999 56778889999982              21111110 0 222222211 11248999999


Q ss_pred             CCCCceeEEEEEEcCC----CcceEEEEEEEecCCCCCCCCCCCCeee-cCCccccccCCCCcEEEEEEEecc-CCC-ce
Q psy7036         180 TIEDAGKYKVTAKNEL----GESNATISLNFDSDDAPVPGEGTKPVFT-ERPVTKQSDDDLNDIVIECRLVGE-PEP-TI  252 (254)
Q Consensus       180 ~~~d~G~y~C~~~~~~----~~~~~~~~~~v~~~~~~~~~~~~~p~~~-~~~~~~~~~~g~~~~~l~C~~~~~-p~p-~~  252 (254)
                      +.+|+|.|.|.+.+..    ........+.|.....    ...+|.+. ..+....+.+|+ .+.|.|.+.|. |.+ .+
T Consensus        84 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~----~~~~p~~~~~~~~~~~~~~g~-~v~l~C~~~g~~p~~~~v  158 (245)
T 4ei6_B           84 ALEDSAVYFCASSFWGAYAEQFFGPGTRLTVLEDLK----NVFPPEVAVFEPSEAEISHTQ-KATLVCLATGFYPDHVEL  158 (245)
T ss_dssp             CGGGCEEEEEEEECSSTTCCCEECCCEEEEEESCGG----GCBCCEEEEECCCHHHHHHHS-EEEEEEEEEEEBSSCEEE
T ss_pred             CHhHCEEEEEEEccCCCcceEEEcCCcEEEEecccC----CCCCceEEEeCCCcccccCCC-ceEEEEEEeeEeCCCeEE
Confidence            9999999999999632    2223334555553110    11244433 344444566688 99999999985 545 78


Q ss_pred             eC
Q psy7036         253 SW  254 (254)
Q Consensus       253 ~W  254 (254)
                      +|
T Consensus       159 ~W  160 (245)
T 4ei6_B          159 SW  160 (245)
T ss_dssp             EE
T ss_pred             EE
Confidence            88

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4

Probab=99.45  E-value=1.1e-12  Score=80.89  Aligned_cols=80  Identities=25%  Similarity=0.405  Sum_probs=62.6

Q ss_pred             CCeeeecCCCeEEEEEEEe-eCCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCc
Q psy7036         119 PSIRQEDDGKRLLFECRIQ-ADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGE  197 (254)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~-~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~  197 (254)
                      +....+..|+.+.|.|.+. +.|.+.+.|+|++.......  ..  ..++     .|.|.+++.+|+|.|+|.+.|..|.
T Consensus        17 ~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~k~~~~~~~~~--~~--~~~~-----~L~i~~v~~~D~G~Y~C~a~n~~g~   87 (98)
T 1gl4_B           17 QRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSR--AM--DFNG-----ILTIRNVQPSDAGTYVCTGSNMFAM   87 (98)
T ss_dssp             CCEEEECTTCCEEEEEEEEESSSCCEEEEEEGGGBCCCTT--EE--EETT-----EEEECSCCGGGCEEEEEEEECSSCE
T ss_pred             CCCeEEecCCCEEEEEeCCCCCCCcEEEEEeCCCCCCCce--ee--cCCC-----EEEEeCCChhhCEEEEEEecCCCCc
Confidence            4556788999999999998 58889999999754332221  11  1122     7999999999999999999999998


Q ss_pred             ceEEEEEEEe
Q psy7036         198 SNATISLNFD  207 (254)
Q Consensus       198 ~~~~~~~~v~  207 (254)
                      ....+.|.|.
T Consensus        88 ~~~~~~l~V~   97 (98)
T 1gl4_B           88 DQGTATLHVQ   97 (98)
T ss_dssp             EEEEEEEEEC
T ss_pred             cccEEEEEEe
Confidence            8888777764

>3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus musculus}

Probab=99.45  E-value=4.3e-14  Score=101.61  Aligned_cols=126  Identities=15%  Similarity=0.234  Sum_probs=67.7

Q ss_pred             CCeeeecCCCeEEEEEEEeeCCCCeEEEEECCE--ec---c-------cCCcceEEEcCCCCceeeEEEEccCCCCCcee
Q psy7036         119 PSIRQEDDGKRLLFECRIQADPAPTVIWSHSGV--QV---K-------EDKRHKFSIDKDGHSYFASLEIIDVTIEDAGK  186 (254)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~--~~---~-------~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~  186 (254)
                      +....+.+|+.+.|.|.+.+.+.+.+.|+|+..  ..   .       .....++....  ......|.|.+++.+|+|.
T Consensus        30 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~v~~~D~G~  107 (233)
T 3bqu_C           30 PASLSMSIGEKVTIRCITSTDIDDDMNWYQQKPGEPPRLLISDGNTLRPGVPSRFSSSG--YGTDFVFTIENMLSEDVAD  107 (233)
T ss_dssp             CSBC-------CCEEEEEEEEESSCEEEEEECTTSCCEEEECTTSCBCTTSCTTCCCCE--EEEEEEEC-----CCCCSE
T ss_pred             CCeEEEecCCCEEEEEecCCcCCCeEEEEEECCCCCcEEEEEcCCccCCCCCccEEeec--cCCEEEEEECCCCHHHCEE
Confidence            445567789999999999888777899998532  11   0       00000111100  1122379999999999999


Q ss_pred             EEEEEEcCCCcc-eEEEEEEEecCCCCCCCCCCCCeeecCCccccccCCCCcEEEEEEEecc-CCC-ceeC
Q psy7036         187 YKVTAKNELGES-NATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLVGE-PEP-TISW  254 (254)
Q Consensus       187 y~C~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~l~C~~~~~-p~p-~~~W  254 (254)
                      |.|.+.|..+.. .....+.|...       ..+|.+...+....+.+|+ .++|.|.+.|. |.+ .++|
T Consensus       108 Y~C~~~~~~~~~~~~~~~l~V~~~-------~~~p~v~~~~~~~~~~~g~-~v~L~C~~~g~~p~~~~v~W  170 (233)
T 3bqu_C          108 YYCLQSDNLPYTFGGGTNLEIKRA-------DAAPTVSIFPPSSEQLTSG-GASVVCFLNNFYPKDINVKW  170 (233)
T ss_dssp             EEEEECSSSSCCBCCCCBC---CC-------CBCCEEEEECCCHHHHHTT-EEEEEEEEEEEBSSCEEEEE
T ss_pred             EEEEEecCCceeecCCEEEEEeCC-------CCCCEEEEeCCCHHhhcCC-ceEEEEEEccccCCceEEEE
Confidence            999999876532 22223444321       1256665544333445788 99999999986 444 6888

>4f9p_D 103.2 anti-BTN3A1 antibody fragment; B7 superfamily, butyrophilin, CD277, immune system; 3.52A {Mus musculus}

Probab=99.45  E-value=2.7e-11  Score=84.57  Aligned_cols=174  Identities=16%  Similarity=0.195  Sum_probs=99.7

Q ss_pred             eeecCCCeEEEEEEEeeCC--CCceEEEeC--CEEe------e---------eCCcceEEEeecCCcceEEEEEEeccCC
Q psy7036          18 RQEDEGNRLIFECQLLCNP--KPDIVWFRG--ETQL------S---------EDTRTVMKTTPIGTNKYLVALELDDVIE   78 (254)
Q Consensus        18 ~~v~~g~~v~l~C~~~~~~--~~~v~W~~~--~~~~------~---------~~~~~~~~~~~~~~~~~~~~l~i~~~~~   78 (254)
                      ..+.+|++++|.|.+.|..  ...+.|+|.  |+-+      .         ..-+.++....+.. .-...|.+.+++.
T Consensus        10 ~lvkPG~Sl~lSC~~SG~tf~~y~~~WvRQaPGkgLEWvg~I~~~~g~t~Y~~s~kgR~TiSrD~s-~nt~yLqm~sL~~   88 (254)
T 4f9p_D           10 EVVRPGTSVKVSCKASGYAFTSYLIHWIKQRPGQGLEWIGVINPRSGDSHYNEKFKDRTTLTADQS-SSTAYMQLSSLTS   88 (254)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGCCEEEEEEETTTEEEEEEEEETTTTEEECCTTTTTTEEEEEETT-TTEEEEEECSCCG
T ss_pred             ceECCCCCeEEEEEEeCCChhhCcEEEEEeCCCCCeEEEEEEcCCCCCEEECHHhCCCEEEeeccC-CCcCeeEEccCCC
Confidence            4689999999999998754  345788872  2211      1         11112222222222 2233699999999


Q ss_pred             CCCeEEEEEEEcCCCceEEEEEEEEeccccC--C-------------CCCccccCCCeeeecCCCeEEEEEEEeeCCCCe
Q psy7036          79 TDAGLYKVKAKNKMGEVAASINLNFSREQID--G-------------LAPTFLKKPSIRQEDDGKRLLFECRIQADPAPT  143 (254)
Q Consensus        79 ~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~--~-------------~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~  143 (254)
                      +|.+.|.|.-.....-.-....|+|......  .             ....+...+..+.+.+|+.++|.|.+...-...
T Consensus        89 eDTAvYYCAr~~~~d~WGqGT~VTVSSast~~ps~~~l~~~~sgGSgsdivltQsP~slsvs~G~~vtlsC~~S~~~~~~  168 (254)
T 4f9p_D           89 DDSAVYFCARSDYGAYWGQGTLVTVSAAGGGGSGGGGSGGGGSGGGGSDIVLTQSPVTLSVTPGDSVSLSCRASQSISNN  168 (254)
T ss_dssp             GGCEEEECEESSSCCEECCCEEEEECC-------------------CCSCCEEEECSEEEECTTCEEEEEEEESSCCTTC
T ss_pred             CCCEEEEEEecCCCCCcCCCEEEEEeCCCCcCCCCCCCccccccccccccccccCCceeEEcCCCcEeeEEEccCcccCC
Confidence            9999999975432211112334555321000  0             000112334556788999999999986554445


Q ss_pred             EEEEEC--CEe---c-------ccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcC
Q psy7036         144 VIWSHS--GVQ---V-------KEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNE  194 (254)
Q Consensus       144 ~~W~~~--~~~---~-------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~  194 (254)
                      +.||+.  |+.   +       ...-..++.....+..  .+|+|.+++.+|.+.|.|...+.
T Consensus       169 l~WyqQ~PG~~p~lLiy~~s~~~sGvp~RFSgS~sgt~--ftLtIs~lq~eD~A~YYC~q~~~  229 (254)
T 4f9p_D          169 LHWYRQKSHESPRLLIKYASQSIFGIPSRFSGSGSGTE--FTLSINSVETEDFGIYFCQQSNS  229 (254)
T ss_dssp             CEEEEECTTSCCEEEEETTTEECTTSCTTCEEECCTTE--EEEEEESCCTTCCEEEEEEECSS
T ss_pred             cEEEEECCCCCCEEEEEeeeecCCCCCCCEEeeeeCCE--EEEEECCCCHHHCEEEEEeecCC
Confidence            889863  221   1       0111123333333322  26999999999999999976543

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B

Probab=99.45  E-value=5.4e-13  Score=91.09  Aligned_cols=109  Identities=17%  Similarity=0.251  Sum_probs=76.5

Q ss_pred             eeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCC----------cceEEEc-CCCCceeeEEEEccCCCCCceeEEEE
Q psy7036         122 RQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDK----------RHKFSID-KDGHSYFASLEIIDVTIEDAGKYKVT  190 (254)
Q Consensus       122 ~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~----------~~~~~~~-~~~~~~~~~l~i~~~~~~d~G~y~C~  190 (254)
                      +.+..|+.++|.|.+. .|.+.+.|++++..+....          ..++... .++     +|.|.+++.+|+|.|.|.
T Consensus         5 v~~~~G~~VtL~c~~~-~~~~~i~W~~~~~~i~~~~~~~~~~~~~~~~R~~~~~~~~-----sL~I~~v~~~DsG~Y~C~   78 (171)
T 1ccz_A            5 IYGVVYGNVTFHVPSN-VPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSG-----SLTIYNLTSSDEDEYEME   78 (171)
T ss_dssp             EEEETTCCEEECCCCS-SCCSCEEEEETTEEEEEEETTEEEECGGGTTSEEECTTTC-----CEEECSCCGGGCEEEEEE
T ss_pred             EEEEcCCCEEEcCCCC-CCcceEEEEeCCcEEEEEcCCCcccccccCCcEEEeCCCC-----eEEECCCChhhCceEEEE
Confidence            4567899999999984 4778999999886542111          1122222 222     799999999999999999


Q ss_pred             EEcCCCcceEEEEEEEecCCCCCCCCCCCCeeecCCccccccCCCCcEEEEEEEeccCCCceeC
Q psy7036         191 AKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLVGEPEPTISW  254 (254)
Q Consensus       191 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~l~C~~~~~p~p~~~W  254 (254)
                      +.|..+  ...+.|.|...       ...|.+.....         ...|.|.+.+.|.|.++|
T Consensus        79 ~~n~~~--~~~~~L~V~~~-------~~~p~i~~~~~---------~~~L~C~~~~~p~p~i~W  124 (171)
T 1ccz_A           79 SPNITD--TMKFFLYVLEM-------VSKPMIYWECS---------NATLTCEVLEGTDVELKL  124 (171)
T ss_dssp             CTTCCS--CEEEEEEEECC-------CCCCEEEEETT---------TTEEEEECSSCSSCEEEE
T ss_pred             EeCCCC--cEEEEEEEECc-------CCCCEEEEecC---------CcEEEEEeCCCCCcEEEE
Confidence            998877  56667777642       12344432211         127999999999999998

>4gos_A V-SET domain-containing T-cell activation inhibit; immunoglobulin domain, glycoprotein, disulfide bond, immunit adaptive immunity; HET: NAG BMA MAN; 1.59A {Homo sapiens}

Probab=99.45  E-value=2.6e-13  Score=87.49  Aligned_cols=96  Identities=21%  Similarity=0.158  Sum_probs=66.3

Q ss_pred             CeeEeCCCceeecCCCeEEEEEEEeeCCC---CceEEEeCCEE-----------eee----CCcceEEEeecCCcceEEE
Q psy7036           9 PSFTQKPQLRQEDEGNRLIFECQLLCNPK---PDIVWFRGETQ-----------LSE----DTRTVMKTTPIGTNKYLVA   70 (254)
Q Consensus         9 p~~~~~~~~~~v~~g~~v~l~C~~~~~~~---~~v~W~~~~~~-----------~~~----~~~~~~~~~~~~~~~~~~~   70 (254)
                      ..++..+....+..|++|+|.|.+...+.   ..|.|+|++..           ...    ....+..........+..+
T Consensus         6 ~sVt~~~~~v~g~vG~~v~L~C~~~~~~~~~~~~V~W~k~~~~~~v~~~~~g~~~~~~~~~~~~~R~~~~~~~~~~g~~s   85 (125)
T 4gos_A            6 HSITVTTVASAGNIGEDGILSCTFEPDIKLSDIVIQWLKEGVLGLVHEFKEGKDELSEQDEMFRGRTAVFADQVIVGNAS   85 (125)
T ss_dssp             CCSCEEEECEEEETTSCEEEEEEECCCSCGGGCEEEEEETTCSSBSEEEETTEECCTTBCGGGTTCEEECTTTGGGTBCC
T ss_pred             eEEEccCceEEEeCCCCEEEEEEEcCCcccCcEEEEEEEeccCceEEEEEeecccccccCccccceEEEecCCccCCeEE
Confidence            34555666678889999999999864332   36899986531           100    0112222222222233458


Q ss_pred             EEEeccCCCCCeEEEEEEEcCCCceEEEEEEEEe
Q psy7036          71 LELDDVIETDAGLYKVKAKNKMGEVAASINLNFS  104 (254)
Q Consensus        71 l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~  104 (254)
                      |.|.+++.+|+|.|+|.+.+..+.....+.|+|-
T Consensus        86 L~I~~v~~~D~G~Y~C~v~~~~g~~~~~v~LkVG  119 (125)
T 4gos_A           86 LRLKNVQLTDAGTYKCYIITSKGKGNANLEYKTG  119 (125)
T ss_dssp             EEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             EEECCCChHHCEEEEEEEEeCCCeEEEEEEEEEC
Confidence            9999999999999999999999888888888873

>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus}

Probab=99.44  E-value=8e-13  Score=83.55  Aligned_cols=96  Identities=16%  Similarity=0.326  Sum_probs=68.3

Q ss_pred             CCCccccCCCeeeecCCCeEEEEEEEeeC--CCCeEEEEECCEecccCCcceEEEc-CC---CCceeeEEEEccCCCCCc
Q psy7036         111 LAPTFLKKPSIRQEDDGKRLLFECRIQAD--PAPTVIWSHSGVQVKEDKRHKFSID-KD---GHSYFASLEIIDVTIEDA  184 (254)
Q Consensus       111 ~~~~~~~~~~~~~~~~g~~~~l~C~~~~~--~~~~~~W~~~~~~~~~~~~~~~~~~-~~---~~~~~~~l~i~~~~~~d~  184 (254)
                      .+|.+...+....+..|+.+.|.|.+.+.  +.+.+.|++++..+........... ..   .....+.|.|.+++.+|+
T Consensus         9 ~~P~i~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~   88 (112)
T 3so5_A            9 PXPQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGELMEYTTILRLRNVEFTSE   88 (112)
T ss_dssp             CSCEEEECCCCEEECTTCCEEEEEEEEESCCCCCEEEEEETTEECTTCEEEEEEETTGGGSSCEEEEEEEEECSCCGGGC
T ss_pred             CCCeEEeCCCCcEEECCCCEEEEEEEecCCCCCEEEEEccCCcccccccccceeeeeccCCCccccceEEEEeccccccC
Confidence            45566666666788899999999999865  4578999999988764321111111 00   111235899999999999


Q ss_pred             eeEEEEEEcCCCc-ceEEEEEEE
Q psy7036         185 GKYKVTAKNELGE-SNATISLNF  206 (254)
Q Consensus       185 G~y~C~~~~~~~~-~~~~~~~~v  206 (254)
                      |.|+|.|.|..|. .+..+.|.|
T Consensus        89 G~Y~C~a~n~~g~~~s~~~~l~V  111 (112)
T 3so5_A           89 GXYQCVISNHFGSSYSVXAXLTI  111 (112)
T ss_dssp             EEEEEEEEETTEEEECCCEEEEE
T ss_pred             CeEEEEEEeCCCcEEEeEEEEEe
Confidence            9999999999887 345666654

>2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid factor IGG1-FC, immunoglobulin C region, membrane, glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=99.43  E-value=1.5e-13  Score=98.72  Aligned_cols=127  Identities=19%  Similarity=0.241  Sum_probs=78.7

Q ss_pred             CCeeeecCCCeEEEEEEEeeCCC-C-eEEEEECC--Eec---c-------cCCcceEEEcCCCCceeeEEEEccCCCCCc
Q psy7036         119 PSIRQEDDGKRLLFECRIQADPA-P-TVIWSHSG--VQV---K-------EDKRHKFSIDKDGHSYFASLEIIDVTIEDA  184 (254)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~~~-~-~~~W~~~~--~~~---~-------~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~  184 (254)
                      +....+..|+.+.|.|.+.+.+. + .+.|+|+.  ..+   .       .....++.....+  ....|.|.+++.+|+
T Consensus        26 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~--~~~~L~I~~v~~~D~  103 (234)
T 2j6e_L           26 PPSASGTPGQRVTISCSGSSSNIGSNYVYWYQQLPGTAPKLLIYRNNQRPSGVPDRFSGSKSG--TSASLAISGLRSEDE  103 (234)
T ss_dssp             CSCCCBCTTCEEEEEEECCTTTTTTSCCEEEEECSSSCCEEEEBTTTBCCSSSCTTEEEEEET--TEEEEEEESCCSTTC
T ss_pred             CCcEEeeCCCcEEEEEEecCCCCCCCeEEEEEecCCCCcEEEEECccccCCCccccEEEEecC--CeEEEEECCCCHHHC
Confidence            45567889999999999887543 4 69999863  211   0       0001112211111  123799999999999


Q ss_pred             eeEEEEEEcCCCc---ceEEEEEEEecCCCCCCCCCCCCeeecCCccccccCCCCcEEEEEEEeccC-C-CceeC
Q psy7036         185 GKYKVTAKNELGE---SNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLVGEP-E-PTISW  254 (254)
Q Consensus       185 G~y~C~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~l~C~~~~~p-~-p~~~W  254 (254)
                      |.|+|.+.|..+.   ......+.|....      ..+|.+...+....+.+|+ .+.|.|.+.|.+ + +.++|
T Consensus       104 G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~------~~~p~v~~~~~~~~~~~g~-~v~L~C~~~g~~p~~~~v~W  171 (234)
T 2j6e_L          104 ADYYCATWDDSLSAVIFGGGTKLTVLGQP------KAAPSVTLFPPSSEELQAN-KATLVCLISDFFPGAVTVAW  171 (234)
T ss_dssp             SEEEEEEEETTTTEEEECCCBCCCBCCCC------CCCCCCCEECCCHHHHTTS-CCCEEECCCBCSSCCCEEEE
T ss_pred             EEEEEEEEcCCcceeEecCCEEEEEecCC------CCCCcccccCCChhHhcCC-ceEEEEEEEEEcCCceEEEE
Confidence            9999999998772   1223344443211      1244444433333345687 999999999864 4 37888

>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.43  E-value=2.7e-12  Score=79.93  Aligned_cols=89  Identities=21%  Similarity=0.388  Sum_probs=68.7

Q ss_pred             CCCccccCCCeeeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEE
Q psy7036         111 LAPTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVT  190 (254)
Q Consensus       111 ~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~  190 (254)
                      .+|.+...+....+.+|+.+.|.|.. +.|.+.+.|+|++..+....+..+..  ++.  ...|.|.+++.+|+|.|+|.
T Consensus         7 ~pp~~~~~~~~~~v~~G~~v~l~C~~-~~p~~~v~W~k~~~~l~~~~~~~~~~--~~~--~~~L~I~~v~~~D~G~Y~C~   81 (103)
T 2dku_A            7 GANCFTEELTNLQVEEKGTAVFTCKT-EHPAATVTWRKGLLELRASGKHQPSQ--EGL--TLRLTISALEKADSDTYTCD   81 (103)
T ss_dssp             CCCCCSSCCCCEEEETTSEEEEEEEC-SSCCSCCEEEESSCBCCSSSSEEEEE--ETT--EEEEEEESCCTTTCSEEEEE
T ss_pred             CCCEeEecCCcEEEeCCCcEEEEEEe-CCCCCeEEEEeCCEECCCCCeEEEEe--CCC--EEEEEECCCCcccCEEEEEE
Confidence            45666666777889999999999994 88888999999999887665544432  221  13799999999999999998


Q ss_pred             EEcCCCcceEEEEEEEec
Q psy7036         191 AKNELGESNATISLNFDS  208 (254)
Q Consensus       191 ~~~~~~~~~~~~~~~v~~  208 (254)
                          .|.......|.|..
T Consensus        82 ----~g~~~~~~~l~V~~   95 (103)
T 2dku_A           82 ----IGQAQSRAQLLVQG   95 (103)
T ss_dssp             ----CSSCBCCEEEEEEC
T ss_pred             ----eCCceEEEEEEEeC
Confidence                56666667777765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	254
d2cqva1	101	b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [T	7e-17
d2cqva1	101	b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [T	2e-13
d3dara1	97	b.1.1.4 (A:153-249) Fibroblast growth factor recep	4e-16
d3dara1	97	b.1.1.4 (A:153-249) Fibroblast growth factor recep	3e-15
d1biha4	89	b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecr	2e-15
d1biha4	89	b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecr	9e-14
d1biha4	89	b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecr	9e-04
d1koaa1	97	b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorha	3e-15
d1koaa1	97	b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorha	3e-12
d1fhga_	102	b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo)	1e-14
d1fhga_	102	b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo)	6e-11
d1g1ca_	98	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	1e-13
d1g1ca_	98	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	1e-12
d1tnna_	91	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	1e-12
d1tnna_	91	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	1e-09
d1cs6a4	89	b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gall	1e-12
d1cs6a4	89	b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gall	8e-10
d1qz1a3	100	b.1.1.4 (A:190-289) Neural cell adhesion molecule	2e-12
d1qz1a3	100	b.1.1.4 (A:190-289) Neural cell adhesion molecule	1e-09
d1wwca_	105	b.1.1.4 (A:) NT3 binding domain of trkC receptor {	2e-12
d1wwca_	105	b.1.1.4 (A:) NT3 binding domain of trkC receptor {	2e-06
d1cs6a1	97	b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus	5e-12
d1cs6a1	97	b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus	5e-12
d1he7a_	107	b.1.1.4 (A:) High affinity nerve growth factor rec	4e-11
d1he7a_	107	b.1.1.4 (A:) High affinity nerve growth factor rec	5e-08
d2avga1	110	b.1.1.4 (A:1-110) Cardiac myosin binding protein C	6e-11
d2avga1	110	b.1.1.4 (A:1-110) Cardiac myosin binding protein C	4e-10
d1f97a2	110	b.1.1.4 (A:129-238) Junction adhesion molecule, JA	7e-11
d1f97a2	110	b.1.1.4 (A:129-238) Junction adhesion molecule, JA	4e-06
d2crya1	115	b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRR	7e-11
d2fdbp2	109	b.1.1.4 (P:2252-2360) Fibroblast growth factor rec	2e-10
d2fdbp2	109	b.1.1.4 (P:2252-2360) Fibroblast growth factor rec	7e-09
d2dava1	113	b.1.1.4 (A:8-120) Myosin-binding protein C, slow-t	2e-10
d2dava1	113	b.1.1.4 (A:8-120) Myosin-binding protein C, slow-t	4e-08
d1wwbx_	103	b.1.1.4 (X:) Ligand binding domain of trkB recepto	3e-10
d1wwbx_	103	b.1.1.4 (X:) Ligand binding domain of trkB recepto	4e-09
d1cs6a3	91	b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gall	3e-10
d1cs6a3	91	b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gall	2e-09
d1biha1	94	b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropi	4e-10
d1biha1	94	b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropi	5e-08
d1epfa2	92	b.1.1.4 (A:98-189) Neural cell adhesion molecule (	6e-10
d1epfa2	92	b.1.1.4 (A:98-189) Neural cell adhesion molecule (	6e-08
d3b5ha1	101	b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo	1e-09
d3b5ha1	101	b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo	4e-08
d1rhfa1	91	b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor	1e-09
d1rhfa1	91	b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor	3e-07
d1gxea_	130	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	3e-09
d1gxea_	130	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	3e-06
d1iray3	107	b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor	6e-09
d1iray3	107	b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor	1e-06
d2aw2a1	104	b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator	1e-08
d1biha3	97	b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecr	2e-08
d1biha3	97	b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecr	5e-05
d1wiua_	93	b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis el	2e-08
d1wiua_	93	b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis el	2e-06
d1gl4b_	89	b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus muscu	2e-08
d1gl4b_	89	b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus muscu	7e-06
d1nbqa2	104	b.1.1.4 (A:130-233) Junction adhesion molecule, JA	3e-08
d1nbqa2	104	b.1.1.4 (A:130-233) Junction adhesion molecule, JA	2e-06
d2c9aa1	96	b.1.1.4 (A:184-279) Receptor-type tyrosine-protein	3e-08
d2c9aa1	96	b.1.1.4 (A:184-279) Receptor-type tyrosine-protein	2e-06
d1x44a1	90	b.1.1.4 (A:8-97) Myosin-binding protein C, slow-ty	5e-08
d1x44a1	90	b.1.1.4 (A:8-97) Myosin-binding protein C, slow-ty	7e-07
d1pd6a_	94	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	3e-07
d1pd6a_	94	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	1e-05
d2oz4a3	84	b.1.1.4 (A:367-450) Intercellular adhesion molecul	9e-07
d2oz4a3	84	b.1.1.4 (A:367-450) Intercellular adhesion molecul	5e-06
d2ifga1	92	b.1.1.4 (A:192-283) High affinity nerve growth fac	1e-06
d2ifga1	92	b.1.1.4 (A:192-283) High affinity nerve growth fac	7e-06
d1iray1	101	b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {H	2e-05
d1iray1	101	b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {H	0.002
d1rhfa2	85	b.1.1.4 (A:98-182) Tyrosine-protein kinase recepto	3e-05
d1rhfa2	85	b.1.1.4 (A:98-182) Tyrosine-protein kinase recepto	7e-05
d1iray2	103	b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor	5e-05
d1iray2	103	b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor	0.001
d1f97a1	102	b.1.1.1 (A:27-128) Junction adhesion molecule, JAM	6e-05
d1pkoa_	126	b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (	7e-05
d1ccza1	93	b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-ter	1e-04
d1ccza1	93	b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-ter	8e-04
d1biha2	111	b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecro	3e-04
d1n26a1	93	b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chai	6e-04
d1hnga1	98	b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus no	0.001
d2g5ra1	121	b.1.1.1 (A:24-144) N-terminal domain of sialic aci	0.004
d1iama1	103	b.1.1.3 (A:83-185) Intercellular cell adhesion mol	0.004
d1nbqa1	105	b.1.1.1 (A:25-129) Junction adhesion molecule, JAM	0.004

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.8 bits (175), Expect = 7e-17
 Identities = 24/106 (22%), Positives = 43/106 (40%), Gaps = 6/106 (5%)

Query: 113 PTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFA 172
           P  ++ P  ++   G+ +    ++      T  W     Q++E +  K    ++G     
Sbjct: 1   PQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGS---- 56

Query: 173 SLEIIDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGT 218
            L I+    E  G Y +  +N+LG   A ++L     D P P  GT
Sbjct: 57  KLTILAARQEHCGCYTLLVENKLGSRQAQVNLTV--VDKPDPPAGT 100

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.6 bits (151), Expect = 2e-13
 Identities = 17/94 (18%), Positives = 35/94 (37%), Gaps = 5/94 (5%)

Query: 9   PSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYL 68
           P   Q P+ ++   G  +    ++         W +   Q+ E     ++ +  G+    
Sbjct: 1   PQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGS---- 56

Query: 69  VALELDDVIETDAGLYKVKAKNKMGEVAASINLN 102
             L +    +   G Y +  +NK+G   A +NL 
Sbjct: 57  -KLTILAARQEHCGCYTLLVENKLGSRQAQVNLT 89

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

 Score = 69.8 bits (170), Expect = 4e-16
 Identities = 24/98 (24%), Positives = 39/98 (39%), Gaps = 7/98 (7%)

Query: 112 APTFLKKPSIRQED----DGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDG 167
           AP +     + +          + F C    +P PT+ W  +G + K++ R      ++ 
Sbjct: 1   APYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQ 60

Query: 168 HSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLN 205
           H    SL +  V   D G Y    +NE G  N T  L+
Sbjct: 61  HW---SLIMESVVPSDKGNYTCVVENEYGSINHTYHLD 95

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

 Score = 67.1 bits (163), Expect = 3e-15
 Identities = 19/99 (19%), Positives = 39/99 (39%), Gaps = 8/99 (8%)

Query: 8   APSFTQKPQLRQED----EGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIG 63
           AP +T   ++ +        N + F C    NP P + W +   +  ++ R         
Sbjct: 1   APYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQ 60

Query: 64  TNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLN 102
                  L ++ V+ +D G Y    +N+ G +  + +L+
Sbjct: 61  HWS----LIMESVVPSDKGNYTCVVENEYGSINHTYHLD 95

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 67.5 bits (164), Expect = 2e-15
 Identities = 23/95 (24%), Positives = 35/95 (36%), Gaps = 10/95 (10%)

Query: 112 APTFLKKPSIRQE-DDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSY 170
           AP + +KP        G+ +   C++   PAP V+WSH+   +   +             
Sbjct: 2   APKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGGRATVTDSG------ 55

Query: 171 FASLEIIDVTIEDAGKYKVTAKNELGESNATISLN 205
              L I  V   D G Y   A NE G+      + 
Sbjct: 56  ---LVIKGVKNGDKGYYGCRATNEHGDKYFETLVQ 87

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 62.9 bits (152), Expect = 9e-14
 Identities = 23/96 (23%), Positives = 37/96 (38%), Gaps = 11/96 (11%)

Query: 8   APSFTQKPQLRQE-DEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNK 66
           AP + QKP+      +G  +   C++   P P++VW      LS    TV  +       
Sbjct: 2   APKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGGRATVTDSG------ 55

Query: 67  YLVALELDDVIETDAGLYKVKAKNKMGEVAASINLN 102
               L +  V   D G Y  +A N+ G+      + 
Sbjct: 56  ----LVIKGVKNGDKGYYGCRATNEHGDKYFETLVQ 87

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 35.5 bits (81), Expect = 9e-04
 Identities = 9/37 (24%), Positives = 17/37 (45%)

Query: 218 TKPVFTERPVTKQSDDDLNDIVIECRLVGEPEPTISW 254
           + P + ++P          D+ I C++ G P P + W
Sbjct: 1   SAPKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVW 37

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 67.2 bits (163), Expect = 3e-15
 Identities = 27/100 (27%), Positives = 43/100 (43%), Gaps = 4/100 (4%)

Query: 113 PTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFA 172
           P F+ KP   +  +G+   F CR+ A   P V W     ++K+  ++    + + +    
Sbjct: 2   PRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDY---- 57

Query: 173 SLEIIDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAP 212
            L I  V  +D G+Y V AKN  G     + LN      P
Sbjct: 58  GLTINRVKGDDKGEYTVRAKNSYGTKEEIVFLNVTRHSEP 97

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 59.1 bits (142), Expect = 3e-12
 Identities = 24/94 (25%), Positives = 41/94 (43%), Gaps = 5/94 (5%)

Query: 9   PSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYL 68
           P F  KP   +  EG    F C+++ +  P + W + + +L +  + + +      N   
Sbjct: 2   PRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKR-----YNGND 56

Query: 69  VALELDDVIETDAGLYKVKAKNKMGEVAASINLN 102
             L ++ V   D G Y V+AKN  G     + LN
Sbjct: 57  YGLTINRVKGDDKGEYTVRAKNSYGTKEEIVFLN 90

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

 Score = 66.1 bits (160), Expect = 1e-14
 Identities = 28/103 (27%), Positives = 47/103 (45%), Gaps = 3/103 (2%)

Query: 106 EQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDK 165
           E+   + P F K     +  +G    F+C+++  P P V+W      VKE +  +   D+
Sbjct: 2   EEKPHVKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDE 61

Query: 166 DGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFDS 208
           +G+       I +V  +D  KY   A N LGE+  T  L  ++
Sbjct: 62  EGNCSL---TISEVCGDDDAKYTCKAVNSLGEATCTAELLVET 101

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

 Score = 55.7 bits (133), Expect = 6e-11
 Identities = 22/95 (23%), Positives = 40/95 (42%), Gaps = 4/95 (4%)

Query: 8   APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKY 67
            P FT+     +  EG+   F+C++   P P+++WF+ +  + E     +     G    
Sbjct: 8   KPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSL 67

Query: 68  LVALELDDVIETDAGLYKVKAKNKMGEVAASINLN 102
            ++    +V   D   Y  KA N +GE   +  L 
Sbjct: 68  TIS----EVCGDDDAKYTCKAVNSLGEATCTAELL 98

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 63.0 bits (152), Expect = 1e-13
 Identities = 24/94 (25%), Positives = 38/94 (40%), Gaps = 3/94 (3%)

Query: 112 APTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYF 171
           AP   ++   +    G    F  R+   P P   W  +GV+++   R  +   +D     
Sbjct: 4   APKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCEL 63

Query: 172 ASLEIIDVTIEDAGKYKVTAKNELGESNATISLN 205
               I DVT ED+    V A N  GE+++   L 
Sbjct: 64  ---VIRDVTGEDSASIMVKAINIAGETSSHAFLL 94

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 60.7 bits (146), Expect = 1e-12
 Identities = 19/95 (20%), Positives = 37/95 (38%), Gaps = 4/95 (4%)

Query: 8   APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKY 67
           AP   ++ Q +   +G+   F  +++  P P+  W++   ++    R           + 
Sbjct: 4   APKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCEL 63

Query: 68  LVALELDDVIETDAGLYKVKAKNKMGEVAASINLN 102
                + DV   D+    VKA N  GE ++   L 
Sbjct: 64  ----VIRDVTGEDSASIMVKAINIAGETSSHAFLL 94

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 60.3 bits (145), Expect = 1e-12
 Identities = 26/91 (28%), Positives = 37/91 (40%), Gaps = 4/91 (4%)

Query: 115 FLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASL 174
            L KP      +G+   F C    +P PTV W   G  +    RH+ +  K   ++    
Sbjct: 2   ILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTF---- 57

Query: 175 EIIDVTIEDAGKYKVTAKNELGESNATISLN 205
           EI  V   D G Y V  +N  G+  A  +L 
Sbjct: 58  EISSVQASDEGNYSVVVENSEGKQEAEFTLT 88

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 52.2 bits (124), Expect = 1e-09
 Identities = 23/92 (25%), Positives = 31/92 (33%), Gaps = 5/92 (5%)

Query: 11  FTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVA 70
              KP+     EG    F C     P P + W R          +      + T KY   
Sbjct: 2   ILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQV-----LSTSARHQVTTTKYKST 56

Query: 71  LELDDVIETDAGLYKVKAKNKMGEVAASINLN 102
            E+  V  +D G Y V  +N  G+  A   L 
Sbjct: 57  FEISSVQASDEGNYSVVVENSEGKQEAEFTLT 88

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 59.9 bits (144), Expect = 1e-12
 Identities = 22/93 (23%), Positives = 35/93 (37%), Gaps = 8/93 (8%)

Query: 113 PTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFA 172
           P +L   +  + D G  L + C     P P V W   G  +    R +            
Sbjct: 2   PDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEV--------SGG 53

Query: 173 SLEIIDVTIEDAGKYKVTAKNELGESNATISLN 205
            L    + +ED+G Y+  A+N+ G   A+  L 
Sbjct: 54  ELRFSKLVLEDSGMYQCVAENKHGTVYASAELT 86

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 52.2 bits (124), Expect = 8e-10
 Identities = 23/94 (24%), Positives = 37/94 (39%), Gaps = 9/94 (9%)

Query: 9   PSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYL 68
           P +       + D G+ L + C     P+P + W R    L+   R  +           
Sbjct: 2   PDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVSGGE------- 54

Query: 69  VALELDDVIETDAGLYKVKAKNKMGEVAASINLN 102
             L    ++  D+G+Y+  A+NK G V AS  L 
Sbjct: 55  --LRFSKLVLEDSGMYQCVAENKHGTVYASAELT 86

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 59.9 bits (144), Expect = 2e-12
 Identities = 24/95 (25%), Positives = 41/95 (43%), Gaps = 4/95 (4%)

Query: 113 PTFLKKPSIRQE--DDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSY 170
           PT   + SI     + G+ +   C     P PT+ W+  G  ++ ++           S 
Sbjct: 4   PTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDS- 62

Query: 171 FASLEIIDVTIEDAGKYKVTAKNELGESNATISLN 205
            + L I +V   D  +Y   A+N+ GE +A+I L 
Sbjct: 63  -SELTIRNVDKNDEAEYVCIAENKAGEQDASIHLK 96

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 51.8 bits (123), Expect = 1e-09
 Identities = 20/99 (20%), Positives = 36/99 (36%), Gaps = 5/99 (5%)

Query: 6   DFAPSFTQKPQLRQE--DEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIG 63
           +  P+   +  +     + G  +   C     P+P + W +    +  +     K     
Sbjct: 1   NVPPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSD 60

Query: 64  TNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLN 102
            +  L      +V + D   Y   A+NK GE  ASI+L 
Sbjct: 61  DSSELTI---RNVDKNDEAEYVCIAENKAGEQDASIHLK 96

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.0 bits (144), Expect = 2e-12
 Identities = 27/99 (27%), Positives = 45/99 (45%), Gaps = 5/99 (5%)

Query: 119 PSIRQEDDGKRLLFEC---RIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLE 175
           P +   ++ +  L  C    ++ +P PT+ W H+G  ++E K       ++G      L 
Sbjct: 6   PRVVSLEEPELRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLL 65

Query: 176 IIDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVP 214
               T  + G Y + AKN LG +N TI+ +F     P P
Sbjct: 66  FNKPTHYNNGNYTLIAKNPLGTANQTINGHF--LKEPFP 102

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.4 bits (101), Expect = 2e-06
 Identities = 20/92 (21%), Positives = 33/92 (35%), Gaps = 4/92 (4%)

Query: 15  PQLRQEDEGNRLIFECQLL---CNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVAL 71
           P++   +E    +  C       NP P + W      L E     ++    G       L
Sbjct: 6   PRVVSLEEPELRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEI-SEGCL 64

Query: 72  ELDDVIETDAGLYKVKAKNKMGEVAASINLNF 103
             +     + G Y + AKN +G    +IN +F
Sbjct: 65  LFNKPTHYNNGNYTLIAKNPLGTANQTINGHF 96

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 58.8 bits (141), Expect = 5e-12
 Identities = 22/99 (22%), Positives = 41/99 (41%), Gaps = 9/99 (9%)

Query: 112 APTFLKKPS---IRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGH 168
            P F ++P+     +    +++   CR +A+P  T  W  +G ++K     ++ +     
Sbjct: 4   GPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLV---- 59

Query: 169 SYFASLEIIDVTIEDAGKYKVTAKNELGE-SNATISLNF 206
                +    V  +DAG Y+  A N  G   +   SL F
Sbjct: 60  -AGDLVISNPVKAKDAGSYQCVATNARGTVVSREASLRF 97

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 58.8 bits (141), Expect = 5e-12
 Identities = 20/101 (19%), Positives = 35/101 (34%), Gaps = 10/101 (9%)

Query: 7   FAPSFTQKPQ---LRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIG 63
           + P F ++P      +     ++   C+   NP     W    T+L     +  +     
Sbjct: 3   YGPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAGD 62

Query: 64  TNKYLVALELDDVIETDAGLYKVKAKNKMGEV-AASINLNF 103
                  +  + V   DAG Y+  A N  G V +   +L F
Sbjct: 63  L------VISNPVKAKDAGSYQCVATNARGTVVSREASLRF 97

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.5 bits (135), Expect = 4e-11
 Identities = 16/78 (20%), Positives = 30/78 (38%), Gaps = 3/78 (3%)

Query: 132 FECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHS---YFASLEIIDVTIEDAGKYK 188
               +   PAP++ W  +G  + E         +   +       L +   T  + G Y 
Sbjct: 20  IPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYT 79

Query: 189 VTAKNELGESNATISLNF 206
           + A N  G+++A+I   F
Sbjct: 80  LLAANPFGQASASIMAAF 97

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.0 bits (113), Expect = 5e-08
 Identities = 22/106 (20%), Positives = 37/106 (34%), Gaps = 9/106 (8%)

Query: 16  QLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLV--ALEL 73
           QL    E +       +   P P + W    + L+E +    +      N+ +    L L
Sbjct: 8   QLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRL 67

Query: 74  DDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKP 119
           +     + G Y + A N  G+ +ASI   F       +   F   P
Sbjct: 68  NQPTHVNNGNYTLLAANPFGQASASIMAAF-------MDNPFEFNP 106

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.2 bits (134), Expect = 6e-11
 Identities = 18/102 (17%), Positives = 29/102 (28%), Gaps = 8/102 (7%)

Query: 112 APTFLKKPSIRQEDDGKRLLFECRIQADP---APTVIWSHSGVQVKEDKRHKF-----SI 163
              F+ +P   +   G  + F  R+        P V W          K  +      S 
Sbjct: 4   IGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSY 63

Query: 164 DKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLN 205
           D+    Y   L I D      G Y+     +     +  +L 
Sbjct: 64  DRASKVYLFELHITDAQPAFTGGYRCEVSTKDKFDCSNFNLT 105

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.9 bits (128), Expect = 4e-10
 Identities = 19/105 (18%), Positives = 36/105 (34%), Gaps = 7/105 (6%)

Query: 5   EDFAPSFTQKPQLRQEDEGNRLIFECQLLCNP---KPDIVWFRGETQLSEDTRT----VM 57
           +D    F  +PQ  +   G  + F  ++        P + WF+G+             + 
Sbjct: 1   DDPIGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLH 60

Query: 58  KTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLN 102
            +    +  YL  L + D      G Y+ +   K     ++ NL 
Sbjct: 61  DSYDRASKVYLFELHITDAQPAFTGGYRCEVSTKDKFDCSNFNLT 105

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 55.8 bits (133), Expect = 7e-11
 Identities = 20/108 (18%), Positives = 34/108 (31%), Gaps = 5/108 (4%)

Query: 113 PTFLKKPSIRQEDDGKRLLFECRIQA-DPAPTVIWSHSGVQVKEDKRHKFSIDKDG---- 167
           P+            G R +  C      P     W   G+ +      K     +     
Sbjct: 3   PSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTI 62

Query: 168 HSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPG 215
                 L    VT  D+G+Y   A+N  G +  + + + D+ +  V G
Sbjct: 63  DPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMDAVELNVGG 110

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 42.7 bits (99), Expect = 4e-06
 Identities = 19/98 (19%), Positives = 31/98 (31%), Gaps = 4/98 (4%)

Query: 9   PSFTQKPQLRQEDEGNRLIFECQLLC-NPKPDIVWFRGETQLSEDTRTVMKTTPIGT--- 64
           PS            GNR +  C     +P  +  WF+    +        +     +   
Sbjct: 3   PSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTI 62

Query: 65  NKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLN 102
           +     L  D V   D+G Y  +A+N  G    S   +
Sbjct: 63  DPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAH 100

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]} Length = 115

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.9 bits (133), Expect = 7e-11
 Identities = 19/110 (17%), Positives = 35/110 (31%), Gaps = 4/110 (3%)

Query: 112 APTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWS---HSGVQVKEDKRHKFSIDKDGH 168
            P  +     +    G++   +C I++ P P  I      + ++     R+         
Sbjct: 6   GPPIISSTQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEE 65

Query: 169 SYFASLEIIDVTIE-DAGKYKVTAKNELGESNATISLNFDSDDAPVPGEG 217
              ++L I ++        Y  TA N  G     I L     +   P  G
Sbjct: 66  GVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQGSEMSGPSSG 115

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]} Length = 109

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

 Score = 55.0 bits (131), Expect = 2e-10
 Identities = 23/88 (26%), Positives = 35/88 (39%), Gaps = 9/88 (10%)

Query: 127 GKRLLFECRIQADPAPTVIWSH----SGVQVKEDKRHKFSIDKDGH-----SYFASLEII 177
           G  + F C++ +D  P + W      +G +   D      + K             L I 
Sbjct: 20  GGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIR 79

Query: 178 DVTIEDAGKYKVTAKNELGESNATISLN 205
           +VT EDAG+Y   A N +G S  +  L 
Sbjct: 80  NVTFEDAGEYTCLAGNSIGISFHSAWLT 107

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]} Length = 109

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

 Score = 50.4 bits (119), Expect = 7e-09
 Identities = 21/103 (20%), Positives = 35/103 (33%), Gaps = 9/103 (8%)

Query: 9   PSFTQK-PQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDT--------RTVMKT 59
           P      P       G  + F C++  + +P I W +   +             + +   
Sbjct: 5   PILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAA 64

Query: 60  TPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLN 102
               T+K +  L + +V   DAG Y   A N +G    S  L 
Sbjct: 65  GVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWLT 107

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 113

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.3 bits (129), Expect = 2e-10
 Identities = 19/108 (17%), Positives = 38/108 (35%), Gaps = 8/108 (7%)

Query: 115 FLKKPSIRQEDDGKRLLFECRIQADP---APTVIWSHSGVQVKEDK-----RHKFSIDKD 166
           F++KP       G+ + F  +++A+     PT+ W          K     + K + ++ 
Sbjct: 3   FIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERH 62

Query: 167 GHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVP 214
              Y   ++II      AG Y+     +    + +  L         P
Sbjct: 63  SRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHESTGTTP 110

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 113

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.1 bits (113), Expect = 4e-08
 Identities = 20/99 (20%), Positives = 36/99 (36%), Gaps = 7/99 (7%)

Query: 11  FTQKPQLRQEDEGNRLIFECQLLCNP---KPDIVWFRGETQLSEDTRTVM----KTTPIG 63
           F +KPQ      G  + F  ++       KP I WF+G+               +T    
Sbjct: 3   FIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERH 62

Query: 64  TNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLN 102
           +  Y   +++    +  AG Y+ +   K    + S +L 
Sbjct: 63  SRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLE 101

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.8 bits (128), Expect = 3e-10
 Identities = 22/92 (23%), Positives = 39/92 (42%), Gaps = 4/92 (4%)

Query: 119 PSIRQEDDGKR---LLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSI-DKDGHSYFASL 174
           P+I   +             ++ +P P + W ++G  + E K     I   +   Y   L
Sbjct: 5   PTITFLESPTSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCL 64

Query: 175 EIIDVTIEDAGKYKVTAKNELGESNATISLNF 206
           ++ + T  + G Y + AKNE G+    IS +F
Sbjct: 65  QLDNPTHMNNGDYTLIAKNEYGKDEKQISAHF 96

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.7 bits (120), Expect = 4e-09
 Identities = 26/97 (26%), Positives = 40/97 (41%), Gaps = 3/97 (3%)

Query: 7   FAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNK 66
           FAP+ T    L      +       +  NPKP + WF     L+E      K       +
Sbjct: 3   FAPTITF---LESPTSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTE 59

Query: 67  YLVALELDDVIETDAGLYKVKAKNKMGEVAASINLNF 103
           Y   L+LD+    + G Y + AKN+ G+    I+ +F
Sbjct: 60  YHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHF 96

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 53.7 bits (128), Expect = 3e-10
 Identities = 22/95 (23%), Positives = 32/95 (33%), Gaps = 11/95 (11%)

Query: 112 APTFLKK-PSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSY 170
           AP+   K P+      G+ +  EC    +P P + W               S      S 
Sbjct: 4   APSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRK----------LDGSQTSKWLSS 53

Query: 171 FASLEIIDVTIEDAGKYKVTAKNELGESNATISLN 205
              L I +V  ED G Y+  A+N  G       + 
Sbjct: 54  EPLLHIQNVDFEDEGTYECEAENIKGRDTYQGRII 88

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 51.4 bits (122), Expect = 2e-09
 Identities = 21/97 (21%), Positives = 33/97 (34%), Gaps = 12/97 (12%)

Query: 7   FAPSFTQK-PQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTN 65
           +APS   K P       G  +  EC    NP P I W + +   +    +          
Sbjct: 3   YAPSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSKWLSSEPL------ 56

Query: 66  KYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLN 102
                L + +V   D G Y+ +A+N  G       + 
Sbjct: 57  -----LHIQNVDFEDEGTYECEAENIKGRDTYQGRII 88

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 53.5 bits (127), Expect = 4e-10
 Identities = 13/87 (14%), Positives = 27/87 (31%), Gaps = 4/87 (4%)

Query: 112 APTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYF 171
            P    +P+     +    + EC I+ +            +    + H  ++        
Sbjct: 2   YPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAAL----RKDE 57

Query: 172 ASLEIIDVTIEDAGKYKVTAKNELGES 198
            SL  +     D G Y+  A+   G +
Sbjct: 58  GSLVFLRPQASDEGHYQCFAETPAGVA 84

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 47.3 bits (111), Expect = 5e-08
 Identities = 14/88 (15%), Positives = 26/88 (29%), Gaps = 5/88 (5%)

Query: 8  APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKY 67
           P    +P      E N  + EC +  N +     ++ + +                 K 
Sbjct: 2  YPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAA-----LRKD 56

Query: 68 LVALELDDVIETDAGLYKVKAKNKMGEV 95
            +L       +D G Y+  A+   G  
Sbjct: 57 EGSLVFLRPQASDEGHYQCFAETPAGVA 84

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 52.6 bits (125), Expect = 6e-10
 Identities = 17/93 (18%), Positives = 34/93 (36%), Gaps = 5/93 (5%)

Query: 113 PTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFA 172
             F   P+ ++  +G+  +  C + +   PT+IW H G  V   K  +F +  + +    
Sbjct: 2   LMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQ-- 59

Query: 173 SLEIIDVTIEDAGKYKVTAKNELGESNATISLN 205
              I  +   D G Y+   +           + 
Sbjct: 60  ---IRGIKKTDEGTYRCEGRILARGEINFKDIQ 89

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 47.2 bits (111), Expect = 6e-08
 Identities = 14/94 (14%), Positives = 33/94 (35%), Gaps = 6/94 (6%)

Query: 9   PSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYL 68
             F   P  ++  EG   +  C ++ +  P I+W        +    ++K          
Sbjct: 2   LMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKH------KGRDVILKKDVRFIVLSN 55

Query: 69  VALELDDVIETDAGLYKVKAKNKMGEVAASINLN 102
             L++  + +TD G Y+ + +          ++ 
Sbjct: 56  NYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQ 89

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.0 bits (123), Expect = 1e-09
 Identities = 16/97 (16%), Positives = 35/97 (36%), Gaps = 4/97 (4%)

Query: 113 PTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDK---DGHS 169
           P      S    ++G+  +  C+ ++ P  T    +     ++      S  +       
Sbjct: 3   PRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQ 62

Query: 170 YFASLEIIDVTIED-AGKYKVTAKNELGESNATISLN 205
             + L I ++ +E   G+Y+    +  G   A I+L 
Sbjct: 63  GRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLR 99

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.7 bits (112), Expect = 4e-08
 Identities = 13/97 (13%), Positives = 28/97 (28%), Gaps = 3/97 (3%)

Query: 9   PSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKT--TPIGTNK 66
           P           +EG   +  C+    P      +   T   +            + +++
Sbjct: 3   PRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQ 62

Query: 67  YLVALELDDVIETD-AGLYKVKAKNKMGEVAASINLN 102
               L ++++      G Y+    +  G   A I L 
Sbjct: 63  GRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLR 99

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.9 bits (123), Expect = 1e-09
 Identities = 12/72 (16%), Positives = 25/72 (34%), Gaps = 2/72 (2%)

Query: 127 GKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGK 186
           G+ +   C ++    P + W   G  V+   +    +      +   L +  V   DAG+
Sbjct: 11  GQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVS--EQHWIGFLSLKSVERSDAGR 68

Query: 187 YKVTAKNELGES 198
           Y    ++     
Sbjct: 69  YWCQVEDGGETE 80

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.0 bits (105), Expect = 3e-07
 Identities = 14/82 (17%), Positives = 31/82 (37%), Gaps = 4/82 (4%)

Query: 22  EGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDA 81
           +G  +   C +    +PDI W +    +    +  +  +      +L    L  V  +DA
Sbjct: 10  QGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLS---LKSVERSDA 66

Query: 82  GLYKVKAKNKMGE-VAASINLN 102
           G Y  + ++     ++  + L 
Sbjct: 67  GRYWCQVEDGGETEISQPVWLT 88

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.6 bits (122), Expect = 3e-09
 Identities = 25/123 (20%), Positives = 36/123 (29%), Gaps = 30/123 (24%)

Query: 113 PTFLKKPSIRQEDD-----GKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDG 167
           P        R  D      G +L  +  I  DPAPTVIW  +  Q  +          + 
Sbjct: 5   PKIHLDCPGRIPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPED 64

Query: 168 H-------------------------SYFASLEIIDVTIEDAGKYKVTAKNELGESNATI 202
                                        +   +     ED G Y VT KN +GE    +
Sbjct: 65  TGDSDEWVFDKKLLCETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNL 124

Query: 203 SLN 205
           ++ 
Sbjct: 125 TVK 127

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.1 bits (100), Expect = 3e-06
 Identities = 20/118 (16%), Positives = 39/118 (33%), Gaps = 24/118 (20%)

Query: 9   PSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTP------- 61
               + P       GN+L  +  +  +P P ++W +  TQ ++         P       
Sbjct: 10  DCPGRIPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSD 69

Query: 62  -----------------IGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLN 102
                            + T K      ++   + D G+Y V  KN +GE   ++ + 
Sbjct: 70  EWVFDKKLLCETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVK 127

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.1 bits (118), Expect = 6e-09
 Identities = 18/102 (17%), Positives = 30/102 (29%), Gaps = 10/102 (9%)

Query: 113 PTFLKKPSIRQE-DDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYF 171
           P  +   +   E D G ++   C +    +    W  +G  + ED            +  
Sbjct: 2   PVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPA 61

Query: 172 --------ASLEIIDVTIEDAG-KYKVTAKNELGESNATISL 204
                     L I ++        +   AKN  G   A I L
Sbjct: 62  NKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQL 103

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.0 bits (102), Expect = 1e-06
 Identities = 17/102 (16%), Positives = 30/102 (29%), Gaps = 9/102 (8%)

Query: 9   PSFTQKPQLRQE-DEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTV-------MKTT 60
           P          E D G+++   C +         W    + + ED   +           
Sbjct: 2   PVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPA 61

Query: 61  PIGTNKYLVALELDDVIETDAG-LYKVKAKNKMGEVAASINL 101
               +  +  L + ++        +   AKN  G  AA I L
Sbjct: 62  NKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQL 103

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.6 bits (117), Expect = 1e-08
 Identities = 18/97 (18%), Positives = 36/97 (37%), Gaps = 3/97 (3%)

Query: 112 APTFLKKPSIRQEDDGKRLLFECRIQADP-APTVIWSH-SGVQVKEDKRHKFSIDKDGHS 169
              ++K+ S      G     EC ++     P V W   +G    + +  + S  ++ + 
Sbjct: 3   VQLYIKRQSEHSILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNI 62

Query: 170 YFASLEIIDVTIEDAGKYKVTAKNELGESNA-TISLN 205
            F  L    V   D G Y+ +A  +     + + +L 
Sbjct: 63  SFFILHFEPVLPNDNGSYRCSANFQSNLIESHSTTLY 99

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 48.4 bits (114), Expect = 2e-08
 Identities = 15/96 (15%), Positives = 32/96 (33%), Gaps = 5/96 (5%)

Query: 111 LAPTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSY 170
             P ++ K  + +   G   +  C   ++P     +  +G  V  +   + +      + 
Sbjct: 4   PVPQYVSKDMMAKA--GDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHN--RTS 59

Query: 171 FASLEIIDVTIEDAGKYKVTAKNELGESNA-TISLN 205
              L       ED G Y     N +G+    ++ L 
Sbjct: 60  GKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLT 95

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 39.1 bits (90), Expect = 5e-05
 Identities = 15/98 (15%), Positives = 34/98 (34%), Gaps = 6/98 (6%)

Query: 6   DFAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTN 65
           +  P +  K  + +   G+  +  C    NP     +F+    ++ +    +      + 
Sbjct: 3   EPVPQYVSKDMMAKA--GDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSG 60

Query: 66  KYLVALELDDVIETDAGLYKVKAKNKMGEV-AASINLN 102
                L     +  D G+Y  +  N +G+    S+ L 
Sbjct: 61  ---KRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLT 95

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 48.4 bits (114), Expect = 2e-08
 Identities = 21/95 (22%), Positives = 27/95 (28%), Gaps = 4/95 (4%)

Query: 111 LAPTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSY 170
           L P  L      +   G     E      P PT  W+                       
Sbjct: 1   LKPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTT-- 58

Query: 171 FASLEIIDVTIEDAGKYKVTAKNELGESNATISLN 205
             S+        D+G YK+  KNELGE  A   + 
Sbjct: 59  --SIFFPSAKRADSGNYKLKVKNELGEDEAIFEVI 91

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 43.0 bits (100), Expect = 2e-06
 Identities = 17/95 (17%), Positives = 31/95 (32%), Gaps = 5/95 (5%)

Query: 8   APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKY 67
            P      +  +   G     E   +  P P   W  G++        +     +     
Sbjct: 2   KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSG-----AALAPELLVDAKSS 56

Query: 68  LVALELDDVIETDAGLYKVKAKNKMGEVAASINLN 102
             ++        D+G YK+K KN++GE  A   + 
Sbjct: 57  TTSIFFPSAKRADSGNYKLKVKNELGEDEAIFEVI 91

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 48.0 bits (113), Expect = 2e-08
 Identities = 18/92 (19%), Positives = 33/92 (35%), Gaps = 10/92 (10%)

Query: 115 FLKKPSIRQEDDGKRLLFECRIQA-DPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFAS 173
            +++   +    G  + F C  ++  PA T++W+         +            +   
Sbjct: 5   TVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAM---------DFNGI 55

Query: 174 LEIIDVTIEDAGKYKVTAKNELGESNATISLN 205
           L I +V   DAG Y  T  N       T +L+
Sbjct: 56  LTIRNVQPSDAGTYVCTGSNMFAMDQGTATLH 87

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.5 bits (96), Expect = 7e-06
 Identities = 15/93 (16%), Positives = 27/93 (29%), Gaps = 11/93 (11%)

Query: 11  FTQKPQLRQEDEGNRLIFECQLLC-NPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLV 69
             ++ + +    G  + F C     +P   +VW R                         
Sbjct: 5   TVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAMDFNGI--------- 55

Query: 70  ALELDDVIETDAGLYKVKAKNKMGEVAASINLN 102
            L + +V  +DAG Y     N       +  L+
Sbjct: 56  -LTIRNVQPSDAGTYVCTGSNMFAMDQGTATLH 87

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.5 bits (114), Expect = 3e-08
 Identities = 15/97 (15%), Positives = 30/97 (30%), Gaps = 4/97 (4%)

Query: 113 PTFLKKPSIRQEDDGKRLLFECRIQA-DPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYF 171
           P+            G R +  C  Q   P     W   G+ +  + +   +     +   
Sbjct: 3   PSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLN 62

Query: 172 ---ASLEIIDVTIEDAGKYKVTAKNELGESNATISLN 205
                L    ++  D G+Y   A+N  G    + ++ 
Sbjct: 63  PTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVR 99

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.5 bits (101), Expect = 2e-06
 Identities = 19/97 (19%), Positives = 33/97 (34%), Gaps = 3/97 (3%)

Query: 9   PSFTQKPQLRQEDEGNRLIFECQLLC-NPKPDIVWFRGETQLSEDTRTVMKTTPIG--TN 65
           PS            GNR +  C     +P  +  WF+    +  + ++    +      N
Sbjct: 3   PSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLN 62

Query: 66  KYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLN 102
                L  D +  +D G Y  +A+N  G    S  + 
Sbjct: 63  PTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVR 99

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.1 bits (113), Expect = 3e-08
 Identities = 17/90 (18%), Positives = 34/90 (37%), Gaps = 2/90 (2%)

Query: 112 APTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYF 171
            P FL+  ++   + G+   F+C               G+ V++    +  +        
Sbjct: 2   TPHFLRIQNVEV-NAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIA 60

Query: 172 ASLEIIDVTIEDAGKYKVTAKNELGESNAT 201
            S  +++ T  DAGKY+   + E G   + 
Sbjct: 61  -SFNVVNTTKRDAGKYRCMIRTEGGVGISN 89

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.1 bits (100), Expect = 2e-06
 Identities = 12/91 (13%), Positives = 34/91 (37%), Gaps = 3/91 (3%)

Query: 8  APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKY 67
           P F  + Q  + + G    F+C  +         +     + +     +K     + ++
Sbjct: 2  TPHFL-RIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIK--VTSSRRF 58

Query: 68 LVALELDDVIETDAGLYKVKAKNKMGEVAAS 98
          + +  + +  + DAG Y+   + + G   ++
Sbjct: 59 IASFNVVNTTKRDAGKYRCMIRTEGGVGISN 89

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.5 bits (112), Expect = 5e-08
 Identities = 17/89 (19%), Positives = 35/89 (39%), Gaps = 3/89 (3%)

Query: 114 TFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFAS 173
              K+        G+R+  EC + ++    V W  +G ++    + ++ I  +G  +   
Sbjct: 2   MVTKQLEDTTAYCGERVELECEV-SEDDANVKWFKNGEEIIPGPKSRYRIRVEGKKH--I 58

Query: 174 LEIIDVTIEDAGKYKVTAKNELGESNATI 202
           L I   T  DA +Y V        +  ++
Sbjct: 59  LIIEGATKADAAEYSVMTTGGQSSAKLSV 87

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.0 bits (103), Expect = 7e-07
 Identities = 14/91 (15%), Positives = 33/91 (36%), Gaps = 4/91 (4%)

Query: 11  FTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVA 70
            T++ +      G R+  EC++      ++ WF+   ++    ++  +            
Sbjct: 3   VTKQLEDTTAYCGERVELECEV-SEDDANVKWFKNGEEIIPGPKSRYRIRV---EGKKHI 58

Query: 71  LELDDVIETDAGLYKVKAKNKMGEVAASINL 101
           L ++   + DA  Y V           S++L
Sbjct: 59  LIIEGATKADAAEYSVMTTGGQSSAKLSVDL 89

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.2 bits (106), Expect = 3e-07
 Identities = 15/92 (16%), Positives = 30/92 (32%), Gaps = 5/92 (5%)

Query: 112 APTFLKKPSIRQE-DDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSY 170
           +  F KK     +   G ++     + AD    V W  +G   +E +        +    
Sbjct: 5   STAFQKKLEPAYQVSKGHKIRLTVEL-ADHDAEVKWLKNG---QEIQMSGSKYIFESIGA 60

Query: 171 FASLEIIDVTIEDAGKYKVTAKNELGESNATI 202
             +L I   ++ D   Y+     E   +   +
Sbjct: 61  KRTLTISQCSLADDAAYQCVVGGEKCSTELFV 92

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.0 bits (95), Expect = 1e-05
 Identities = 9/88 (10%), Positives = 30/88 (34%), Gaps = 6/88 (6%)

Query: 5  EDFAPSFTQKPQLRQE-DEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIG 63
          E  + +F +K +   +  +G+++    +L  +   ++ W +   ++       +  +   
Sbjct: 2  EKKSTAFQKKLEPAYQVSKGHKIRLTVEL-ADHDAEVKWLKNGQEIQMSGSKYIFES--- 57

Query: 64 TNKYLVALELDDVIETDAGLYKVKAKNK 91
                 L +      D   Y+     +
Sbjct: 58 -IGAKRTLTISQCSLADDAAYQCVVGGE 84

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.8 bits (102), Expect = 9e-07
 Identities = 17/98 (17%), Positives = 30/98 (30%), Gaps = 20/98 (20%)

Query: 7   FAPSFTQK--PQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGT 64
           + P   ++  P      E ++    CQ   NP P++   +  T                 
Sbjct: 1   YGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIGE---------- 50

Query: 65  NKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLN 102
                      V     G Y  +A++  GEV   + +N
Sbjct: 51  --------SVTVTRDLEGTYLCRARSTQGEVTREVTVN 80

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.5 bits (96), Expect = 5e-06
 Identities = 17/96 (17%), Positives = 31/96 (32%), Gaps = 25/96 (26%)

Query: 118 KPSIRQED--------DGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHS 169
            P + + D        +  +    C+   +P P +                    KDG  
Sbjct: 2   GPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCL-----------------KDGTF 44

Query: 170 YFASLEIIDVTIEDAGKYKVTAKNELGESNATISLN 205
                E + VT +  G Y   A++  GE    +++N
Sbjct: 45  PLPIGESVTVTRDLEGTYLCRARSTQGEVTREVTVN 80

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.6 bits (101), Expect = 1e-06
 Identities = 14/94 (14%), Positives = 28/94 (29%), Gaps = 6/94 (6%)

Query: 9   PSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYL 68
           P+   +      D G+ ++  CQ+         W   E + S                 L
Sbjct: 3   PTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGG------LPSL 56

Query: 69  VALELDDVIETDAGLYKVKAKNKMGEVAASINLN 102
                +   + +       A+N +G    S+ +N
Sbjct: 57  GLTLANVTSDLNRKNVTCWAENDVGRAEVSVQVN 90

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.3 bits (95), Expect = 7e-06
 Identities = 15/94 (15%), Positives = 33/94 (35%), Gaps = 7/94 (7%)

Query: 113 PTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFA 172
           PT   +      D G  +L  C+++        W  + ++                    
Sbjct: 3   PTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSG------GLPSL 56

Query: 173 SLEIIDVTIEDAGK-YKVTAKNELGESNATISLN 205
            L + +VT +   K     A+N++G +  ++ +N
Sbjct: 57  GLTLANVTSDLNRKNVTCWAENDVGRAEVSVQVN 90

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (93), Expect = 2e-05
 Identities = 14/88 (15%), Positives = 25/88 (28%), Gaps = 5/88 (5%)

Query: 119 PSIRQEDDGKRLLFECRIQA-DPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEII 177
             I      +  +  C +   +   T+ W     +          I    H +   L  +
Sbjct: 9   KIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRI----HQHKEKLWFV 64

Query: 178 DVTIEDAGKYKVTAKNELGESNATISLN 205
              +ED+G Y    +N        IS  
Sbjct: 65  PAKVEDSGHYYCVVRNSSYCLRIKISAK 92

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.9 bits (79), Expect = 0.002
 Identities = 12/82 (14%), Positives = 23/82 (28%), Gaps = 6/82 (7%)

Query: 22  EGNRLIFECQLL-CNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETD 80
                +  C L     K  I W++ +++    T    +            L        D
Sbjct: 16  ANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEK-----LWFVPAKVED 70

Query: 81  AGLYKVKAKNKMGEVAASINLN 102
           +G Y    +N    +   I+  
Sbjct: 71  SGHYYCVVRNSSYCLRIKISAK 92

>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Tyrosine-protein kinase receptor tyro3, second domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (91), Expect = 3e-05
 Identities = 15/96 (15%), Positives = 31/96 (32%), Gaps = 16/96 (16%)

Query: 9   PSFTQKPQLRQEDEGNRLIFECQLLCN-PKPDIVWFRGETQLSEDTRTVMKTTPIGTNKY 67
           P FT +P+             C+ +       IVW+RG T++     +       G    
Sbjct: 2   PFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPAPSPSVLNVTGVT-- 59

Query: 68  LVALELDDVIETDAGLYKVKAKNKMGEVA-ASINLN 102
                        + ++  +A N  G  +  +  ++
Sbjct: 60  ------------QSTMFSCEAHNLKGLASSRTATVH 83

>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Tyrosine-protein kinase receptor tyro3, second domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (88), Expect = 7e-05
 Identities = 12/96 (12%), Positives = 24/96 (25%), Gaps = 17/96 (17%)

Query: 113 PTFLKKPSIRQEDDGKRLLFECRIQAD-PAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYF 171
           P F  +P              C         T++W     ++         ++       
Sbjct: 2   PFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPAPSPSVLN------- 54

Query: 172 ASLEIIDVTIEDAGKYKVTAKNELGES---NATISL 204
                    +  +  +   A N  G +    AT+ L
Sbjct: 55  ------VTGVTQSTMFSCEAHNLKGLASSRTATVHL 84

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.4 bits (91), Expect = 5e-05
 Identities = 11/86 (12%), Positives = 22/86 (25%), Gaps = 13/86 (15%)

Query: 127 GKRLLFEC------RIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVT 180
                  C      + + +  P + W      +  D  H   +          L +++V 
Sbjct: 14  AGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVK-------DRLIVMNVA 66

Query: 181 IEDAGKYKVTAKNELGESNATISLNF 206
            +  G Y   A          I+   
Sbjct: 67  EKHRGNYTCHASYTYLGKQYPITRVI 92

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.6 bits (81), Expect = 0.001
 Identities = 18/112 (16%), Positives = 27/112 (24%), Gaps = 19/112 (16%)

Query: 9   PSFTQKPQLRQEDEGNRLIFECQLLC------NPKPDIVWFRGETQLSEDTRTVMKTTPI 62
             F QK  +            C  +       N  P + W++    L  D          
Sbjct: 5   AIFKQKLPV-----AGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVKD- 58

Query: 63  GTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPT 114
                   L + +V E   G Y   A          I        ++   PT
Sbjct: 59  -------RLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFITLEENKPT 103

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.9 bits (89), Expect = 6e-05
 Identities = 15/98 (15%), Positives = 29/98 (29%), Gaps = 10/98 (10%)

Query: 118 KPSIRQEDD------GKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYF 171
           K S+            + +   C      +P V W            +   I        
Sbjct: 1   KGSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRV 60

Query: 172 ----ASLEIIDVTIEDAGKYKVTAKNELGESNATISLN 205
               + +    VT +D G+Y      E G++   +S++
Sbjct: 61  TFSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIH 98

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 126

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.3 bits (90), Expect = 7e-05
 Identities = 10/60 (16%), Positives = 19/60 (31%)

Query: 146 WSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLN 205
                 Q  E +     + +       +L I +V   D G Y    ++   +  A + L 
Sbjct: 55  KDQDAEQAPEYRGRTELLKESIGEGKVALRIQNVRFSDEGGYTCFFRDHSYQEEAAVELK 114

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (86), Expect = 1e-04
 Identities = 14/83 (16%), Positives = 27/83 (32%), Gaps = 7/83 (8%)

Query: 127 GKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYF------ASLEIIDVT 180
              + F       P   V+W     +V E +  +F       +         SL I ++T
Sbjct: 10  YGNVTFHVPSNV-PLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLT 68

Query: 181 IEDAGKYKVTAKNELGESNATIS 203
             D  +Y++ + N        + 
Sbjct: 69  SSDEDEYEMESPNITDTMKFFLY 91

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.7 bits (81), Expect = 8e-04
 Identities = 9/84 (10%), Positives = 33/84 (39%), Gaps = 6/84 (7%)

Query: 22  EGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLV-----ALELDDV 76
               + F       P  +++W + + +++E   +  +      N+  +     +L + ++
Sbjct: 9   VYGNVTFHVPS-NVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNL 67

Query: 77  IETDAGLYKVKAKNKMGEVAASIN 100
             +D   Y++++ N    +   + 
Sbjct: 68  TSSDEDEYEMESPNITDTMKFFLY 91

>d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 111

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 37.4 bits (85), Expect = 3e-04
 Identities = 19/99 (19%), Positives = 31/99 (31%), Gaps = 7/99 (7%)

Query: 115 FLKKPSIRQED---DGKRLLFECRI-QADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSY 170
            +  P+   E    +G+    +C +  A P P + W         +        +     
Sbjct: 2   LIASPAKTHEKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGP 61

Query: 171 FASLEIIDVTIEDA---GKYKVTAKNELGESNATISLNF 206
             +L    VT ED     KY  TAKN   +    +    
Sbjct: 62  DGNLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYE 100

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.0 bits (82), Expect = 6e-04
 Identities = 13/96 (13%), Positives = 20/96 (20%), Gaps = 9/96 (9%)

Query: 112 APTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYF 171
            P       +     G  +   C          +           K    S         
Sbjct: 6   CPAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWV------LRKPAAGSHPSRWAGMG 59

Query: 172 ASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFD 207
             L +  V + D+G Y             T+ L  D
Sbjct: 60  RRLLLRSVQLHDSGNYSCYRAGRPA---GTVHLLVD 92

>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 35.4 bits (81), Expect = 0.001
 Identities = 13/67 (19%), Positives = 24/67 (35%), Gaps = 7/67 (10%)

Query: 139 DPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGES 198
                  +        +     F I  +G      L+I ++T +D+G Y VT  +  G  
Sbjct: 34  GSTLVAEFKRKMKPFLKSGA--FEILANG-----DLKIKNLTRDDSGTYNVTVYSTNGTR 86

Query: 199 NATISLN 205
               +L+
Sbjct: 87  ILNKALD 93

>d2g5ra1 b.1.1.1 (A:24-144) N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1) {Human (Homo sapiens) [TaxId: 9606]} Length = 121

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.0 bits (77), Expect = 0.004
 Identities = 16/91 (17%), Positives = 30/91 (32%), Gaps = 11/91 (12%)

Query: 97  ASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKED 156
             +  +FS           +     R  +D                    ++    V+E+
Sbjct: 19  VHVRCSFSYPVDSQTDSDPVHGYWFRAGNDISWKAPVA-----------TNNPAWAVQEE 67

Query: 157 KRHKFSIDKDGHSYFASLEIIDVTIEDAGKY 187
            R +F +  D  +   +L I D  + DAG+Y
Sbjct: 68  TRDRFHLLGDPQTKNCTLSIRDARMSDAGRY 98

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.7 bits (76), Expect = 0.004
 Identities = 10/79 (12%), Positives = 23/79 (29%), Gaps = 4/79 (5%)

Query: 127 GKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGK 186
           GK+L   C+++       +        KE KR              +  ++        +
Sbjct: 19  GKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREPAVG----EPAEVTTTVLVRRDHHGAQ 74

Query: 187 YKVTAKNELGESNATISLN 205
           +    + +L      +  N
Sbjct: 75  FSCRTELDLRPQGLELFEN 93

>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.0 bits (76), Expect = 0.004
 Identities = 12/98 (12%), Positives = 25/98 (25%), Gaps = 3/98 (3%)

Query: 8   APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKY 67
           + +        +  E N +   C       P + W   +   +       K T    ++ 
Sbjct: 4   SVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRV 63

Query: 68  LVA---LELDDVIETDAGLYKVKAKNKMGEVAASINLN 102
                 +    V   D G Y      + G     + + 
Sbjct: 64  TFLPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVK 101

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	254
d1cs6a4	89	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.83
d1g1ca_	98	Titin {Human (Homo sapiens), different modules [Ta	99.82
d1fhga_	102	Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103	99.82
d2cqva1	101	Telokin {Human (Homo sapiens) [TaxId: 9606]}	99.82
d1koaa1	97	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.82
d1wiua_	93	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.81
d1biha4	89	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.79
d1tnna_	91	Titin {Human (Homo sapiens), different modules [Ta	99.79
d1qz1a3	100	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.78
d1epfa2	92	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.77
d3dara1	97	Fibroblast growth factor receptor, FGFR {Human (Ho	99.76
d1fhga_	102	Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103	99.76
d1rhfa2	85	Tyrosine-protein kinase receptor tyro3, second dom	99.76
d2cqva1	101	Telokin {Human (Homo sapiens) [TaxId: 9606]}	99.76
d2avga1	110	Cardiac myosin binding protein C, different domain	99.75
d1koaa1	97	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.75
d1biha3	97	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.75
d1g1ca_	98	Titin {Human (Homo sapiens), different modules [Ta	99.75
d1cs6a3	91	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.74
d1cs6a4	89	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.74
d1wwbx_	103	Ligand binding domain of trkB receptor {Human (Hom	99.74
d1wiua_	93	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.74
d2aw2a1	104	B- and T-lymphocyte attenuator CD272 {Human (Homo	99.73
d1rhfa1	91	Tyrosine-protein kinase receptor tyro3, N-terminal	99.73
d2fdbp2	109	Fibroblast growth factor receptor, FGFR {Human (Ho	99.72
d3b5ha1	101	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	99.72
d1cs6a1	97	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.71
d2dava1	113	Myosin-binding protein C, slow-type {Human (Homo s	99.71
d1tnna_	91	Titin {Human (Homo sapiens), different modules [Ta	99.7
d2nxyb2	84	CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9	99.69
d2ifga1	92	High affinity nerve growth factor receptor TrkA, d	99.69
d1biha1	94	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.69
d1wwca_	105	NT3 binding domain of trkC receptor {Human (Homo s	99.69
d1epfa1	97	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.69
d1gl4b_	89	Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId:	99.69
d1gsma1	90	Mucosal addressin cell adhesion molecule-1 (MADCAM	99.68
d1biha4	89	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.68
d1epfa2	92	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.67
d1x44a1	90	Myosin-binding protein C, slow-type {Human (Homo s	99.67
d1wwca_	105	NT3 binding domain of trkC receptor {Human (Homo s	99.67
d1gxea_	130	Cardiac myosin binding protein C, different domain	99.67
d3dara1	97	Fibroblast growth factor receptor, FGFR {Human (Ho	99.66
d1he7a_	107	High affinity nerve growth factor receptor TrkA, d	99.66
d1vcaa2	90	Vascular cell adhesion molecule-1 (VCAM-1) {Human	99.66
d1qz1a3	100	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.65
d2oz4a3	84	Intercellular adhesion molecule-1, ICAM-1 {Human (	99.65
d1cs6a3	91	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.65
d1fnla2	89	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.64
d1rhfa1	91	Tyrosine-protein kinase receptor tyro3, N-terminal	99.64
d1n26a1	93	Interleukin-6 receptor alpha chain, N-terminal dom	99.64
d2fcba2	88	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.64
d1biha3	97	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.64
d2c9aa1	96	Receptor-type tyrosine-protein phosphatase mu {Hum	99.63
d1wwbx_	103	Ligand binding domain of trkB receptor {Human (Hom	99.63
d1iray3	107	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.63
d1pd6a_	94	Cardiac myosin binding protein C, different domain	99.62
d2avga1	110	Cardiac myosin binding protein C, different domain	99.62
d1nbqa1	105	Junction adhesion molecule, JAM, N-terminal domain	99.62
d1f97a1	102	Junction adhesion molecule, JAM, N-terminal domain	99.62
d1rhfa2	85	Tyrosine-protein kinase receptor tyro3, second dom	99.62
d1biha1	94	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.61
d2dava1	113	Myosin-binding protein C, slow-type {Human (Homo s	99.61
d3b5ha1	101	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	99.61
d1f2qa2	89	IgE high affinity receptor alpha subunit {Human (H	99.61
d1fnla1	84	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.61
d1l6za2	96	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-t	99.6
d1gl4b_	89	Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId:	99.6
d2nxyb2	84	CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9	99.6
d1cs6a1	97	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.6
d1f97a2	110	Junction adhesion molecule, JAM, C-terminal domain	99.6
d2crya1	115	Kin of IRRE-like protein 3, KIRREL3 {Human (Homo s	99.6
d2fcba1	85	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.59
d2fdbp2	109	Fibroblast growth factor receptor, FGFR {Human (Ho	99.59
d1f2qa1	82	IgE high affinity receptor alpha subunit {Human (H	99.58
d1nbqa2	104	Junction adhesion molecule, JAM, C-terminal domain	99.58
d1vcaa2	90	Vascular cell adhesion molecule-1 (VCAM-1) {Human	99.58
d2aw2a1	104	B- and T-lymphocyte attenuator CD272 {Human (Homo	99.57
d1tiua_	89	Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxI	99.57
d1cs6a2	105	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.57
d2ifga1	92	High affinity nerve growth factor receptor TrkA, d	99.57
d1he7a_	107	High affinity nerve growth factor receptor TrkA, d	99.56
d1iama1	103	Intercellular cell adhesion molecule-1 (ICAM-1) {H	99.56
d1iray1	101	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.56
d1gsma1	90	Mucosal addressin cell adhesion molecule-1 (MADCAM	99.56
d1epfa1	97	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.54
d1f97a2	110	Junction adhesion molecule, JAM, C-terminal domain	99.52
d1nbqa2	104	Junction adhesion molecule, JAM, C-terminal domain	99.52
d1iray3	107	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.51
d1gxea_	130	Cardiac myosin binding protein C, different domain	99.51
d1x44a1	90	Myosin-binding protein C, slow-type {Human (Homo s	99.5
d2oz4a3	84	Intercellular adhesion molecule-1, ICAM-1 {Human (	99.5
d1l6za2	96	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-t	99.49
d1olza1	92	Semaphorin 4d Ig-like domain {Human (Homo sapiens)	99.49
d1n26a1	93	Interleukin-6 receptor alpha chain, N-terminal dom	99.48
d1nbqa1	105	Junction adhesion molecule, JAM, N-terminal domain	99.47
d2fcba2	88	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.47
d1f97a1	102	Junction adhesion molecule, JAM, N-terminal domain	99.46
d1cs6a2	105	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.46
d1iray2	103	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.46
d1pkoa_	126	Myelin oligodendrocyte glycoprotein (MOG) {Rat (Ra	99.45
d1fnla2	89	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.45
d2crya1	115	Kin of IRRE-like protein 3, KIRREL3 {Human (Homo s	99.45
d2c9aa1	96	Receptor-type tyrosine-protein phosphatase mu {Hum	99.45
d1olza1	92	Semaphorin 4d Ig-like domain {Human (Homo sapiens)	99.45
d1zxqa1	106	Intercellular cell adhesion molecule-2 (ICAM-2) {H	99.44
d1iray1	101	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.42
d1pd6a_	94	Cardiac myosin binding protein C, different domain	99.41
d1f2qa2	89	IgE high affinity receptor alpha subunit {Human (H	99.41
d1iray2	103	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.41
d1iama1	103	Intercellular cell adhesion molecule-1 (ICAM-1) {H	99.4
d1tiua_	89	Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxI	99.4
d2fcba1	85	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.38
d1fnla1	84	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.37
d1f2qa1	82	IgE high affinity receptor alpha subunit {Human (H	99.36
d1ccza1	93	CD2-binding domain of CD58, N-terminal domain {Hum	99.36
d1biha2	111	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.35
d1zxqa1	106	Intercellular cell adhesion molecule-2 (ICAM-2) {H	99.28
d1biha2	111	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.24
d1hnga1	98	CD2, first domain {Rat (Rattus norvegicus) [TaxId:	99.2
d1l6za1	107	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-t	99.2
d1nezg_	122	CD8 {Mouse (Mus musculus) [TaxId: 10090]}	99.17
d1a0ql1	106	Immunoglobulin light chain kappa variable domain,	99.14
d3bp5a1	114	Programmed cell death protein 1, PD1, extracellula	99.13
d2nxyb1	97	CD4 V-set domains {Human (Homo sapiens) [TaxId: 96	99.11
d1eaja_	124	Coxsackie virus and adenovirus receptor (Car), dom	99.1
d1ccza1	93	CD2-binding domain of CD58, N-terminal domain {Hum	99.1
d1pkoa_	126	Myelin oligodendrocyte glycoprotein (MOG) {Rat (Ra	99.09
d1ospl1	107	Immunoglobulin light chain kappa variable domain,	99.07
d2cdea1	114	T-cell antigen receptor {Human (Homo sapiens), bet	99.06
d1c5cl1	107	Immunoglobulin light chain kappa variable domain,	99.06
d1olla1	95	Ligand binding domain of NK receptor NKp46 {Human	99.06
d2bnqd1	113	T-cell antigen receptor {Human (Homo sapiens), alp	99.05
d1i8ka_	106	Immunoglobulin light chain kappa variable domain,	99.04
d1jhll_	108	Immunoglobulin light chain kappa variable domain,	99.04
d1hnga1	98	CD2, first domain {Rat (Rattus norvegicus) [TaxId:	99.03
d1j1pl_	107	Immunoglobulin light chain kappa variable domain,	99.03
d1kcvl1	107	Immunoglobulin light chain kappa variable domain,	99.02
d1vesa_	113	Novel antigen receptor 12Y-2 {Spotted wobbegong (O	99.01
d1xeda_	116	Polymeric-immunoglobulin receptor, PIGR {Human (Ho	99.01
d1sq2n_	112	Novel antigen receptor (against lysozyme) {Nurse s	99.01
d1lp9e1	115	T-cell antigen receptor {Mouse (Mus musculus), alp	99.01
d1i9ea_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	99.0
d1j8hd1	115	T-cell antigen receptor {Human (Homo sapiens), alp	99.0
d1tvda_	116	T-cell antigen receptor {Human (Homo sapiens), del	98.99
d1mqkl_	109	Immunoglobulin light chain kappa variable domain,	98.99
d1op3k1	106	Immunoglobulin light chain kappa variable domain,	98.99
d1neua_	119	Myelin membrane adhesion molecule P0 {Rat (Rattus	98.99
d1tjgl1	107	Immunoglobulin light chain kappa variable domain,	98.99
d1ucta1	99	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	98.99
d1mexl1	107	Immunoglobulin light chain kappa variable domain,	98.98
d2esve1	111	T-cell antigen receptor {Human (Homo sapiens), bet	98.97
d1bd2d1	111	T-cell antigen receptor {Human (Homo sapiens), alp	98.97
d2ak4d1	114	T-cell antigen receptor {Human (Homo sapiens), alp	98.95
d2ij0c1	118	T-cell antigen receptor {Human (Homo sapiens), bet	98.95
d1akjd_	114	CD8 {Human (Homo sapiens) [TaxId: 9606]}	98.94
d1u3ha1	110	T-cell antigen receptor {Mouse (Mus musculus), alp	98.94
d1d5il1	107	Immunoglobulin light chain kappa variable domain,	98.94
d1ogad1	115	T-cell antigen receptor {Human (Homo sapiens), alp	98.94
d1bwwa_	109	Immunoglobulin light chain kappa variable domain,	98.93
d1yqvl1	104	Immunoglobulin light chain kappa variable domain,	98.91
d1kgce1	112	T-cell antigen receptor {Human (Homo sapiens), bet	98.9
d3cx5k1	107	Immunoglobulin light chain kappa variable domain,	98.9
d1hkfa_	108	NK cell activating receptor NKP44 {Human (Homo sap	98.89
d1ac6a_	110	T-cell antigen receptor {Mouse (Mus musculus), alp	98.89
d1j05a_	111	Immunoglobulin light chain kappa variable domain,	98.86
d1fo0a_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	98.86
d1lk3l1	106	Immunoglobulin light chain kappa variable domain,	98.85
d2gsia1	111	Immunoglobulin light chain kappa variable domain,	98.85
d2atpb1	115	CD8 {Mouse (Mus musculus), beta-chain [TaxId: 1009	98.85
d2ntsp1	113	T-cell antigen receptor {Human (Homo sapiens), bet	98.85
d8faba1	103	Immunoglobulin light chain lambda variable domain,	98.85
d1f3rb2	119	Immunoglobulin light chain kappa variable domain,	98.85
d1dr9a2	95	CD80, second domain {Human (Homo sapiens) [TaxId:	98.84
d2fx7l1	108	Immunoglobulin light chain kappa variable domain,	98.84
d1mjul1	112	Immunoglobulin light chain kappa variable domain,	98.84
d1ncwl1	112	Immunoglobulin light chain kappa variable domain,	98.84
d2esvd1	110	T-cell antigen receptor {Human (Homo sapiens), alp	98.83
d1l6za1	107	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-t	98.83
d1h5ba_	113	T-cell antigen receptor {Mouse (Mus musculus), alp	98.82
d2aq2a1	110	T-cell antigen receptor {Mouse (Mus musculus), bet	98.81
d1n4xl_	113	Immunoglobulin light chain kappa variable domain,	98.8
d1vcaa1	109	Vascular cell adhesion molecule-1 (VCAM-1) {Human	98.8
d1ucta2	96	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	98.79
d1q9ra1	113	Immunoglobulin light chain kappa variable domain,	98.79
d1k5nb_	100	beta2-microglobulin {Human (Homo sapiens) [TaxId:	98.79
d1oaql_	110	Immunoglobulin light chain lambda variable domain,	98.78
d1lk2b_	99	beta2-microglobulin {Mouse (Mus musculus) [TaxId:	98.78
d2bnub1	112	T-cell antigen receptor {Human (Homo sapiens), bet	98.77
d1nfdb1	113	T-cell antigen receptor {Mouse (Mus musculus), bet	98.76
d2g5ra1	121	N-terminal domain of sialic acid binding Ig-like l	98.76
d1ogae1	114	T-cell antigen receptor {Human (Homo sapiens), bet	98.76
d1rzfl1	111	Immunoglobulin light chain lambda variable domain,	98.76
d1nkra2	99	Killer cell inhibitory receptor {Human (Homo sapie	98.75
d1j8he1	113	T-cell antigen receptor {Human (Homo sapiens), bet	98.75
d1q0xl2	102	Immunoglobulin light chain lambda constant domain,	98.75
d1ypzf1	120	T-cell antigen receptor {Human (Homo sapiens), gam	98.74
d1ugna2	98	Ligand binding domain of lir-1 (ilt2) {Human (Homo	98.73
d1eaja_	124	Coxsackie virus and adenovirus receptor (Car), dom	98.72
d1w72l1	109	Immunoglobulin light chain lambda variable domain,	98.72
d1lgva1	112	Immunoglobulin light chain lambda variable domain,	98.71
d1fp5a2	105	Immunoglobulin heavy chain epsilon constant domain	98.71
d1muja1	100	Class II MHC alpha chain, C-terminal domain {Mouse	98.71
d2gj6d1	94	T-cell antigen receptor {Mouse (Mus musculus), bet	98.71
d1smoa_	113	TREM-1 (triggering receptor expressed on myeloid c	98.7
d2rhea_	114	Immunoglobulin light chain lambda variable domain,	98.69
d1olla2	93	Ligand binding domain of NK receptor NKp46 {Human	98.68
d1kgcd1	112	T-cell antigen receptor {Human (Homo sapiens), alp	98.68
d1nfde1	108	Immunoglobulin light chain lambda variable domain,	98.68
d1hxma1	120	T-cell antigen receptor {Human (Homo sapiens), gam	98.67
d1cd0a_	111	Immunoglobulin light chain lambda variable domain,	98.67
d2cdeb1	112	T-cell antigen receptor {Human (Homo sapiens), bet	98.66
d1ncna_	110	CD86 (b7-2), N-terminal domain {Human (Homo sapien	98.66
d1xeda_	116	Polymeric-immunoglobulin receptor, PIGR {Human (Ho	98.65
d1nkra1	96	Killer cell inhibitory receptor {Human (Homo sapie	98.65
d1dr9a1	105	CD80, N-terminal domain {Human (Homo sapiens) [Tax	98.64
d1ospl1	107	Immunoglobulin light chain kappa variable domain,	98.64
d1qfoa_	118	N-terminal domain of sialoadhesin {Mouse (Mus musc	98.64
d1vcaa1	109	Vascular cell adhesion molecule-1 (VCAM-1) {Human	98.63
d1lp9e1	115	T-cell antigen receptor {Mouse (Mus musculus), alp	98.63
d1a0ql1	106	Immunoglobulin light chain kappa variable domain,	98.62
d2cdea1	114	T-cell antigen receptor {Human (Homo sapiens), bet	98.62
d1dqta_	117	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	98.62
d1igtb4	102	Immunoglobulin heavy chain gamma constant domain 3	98.61
d1cqka_	101	Immunoglobulin heavy chain gamma constant domain 3	98.6
d1hxmb1	123	T-cell antigen receptor {Human (Homo sapiens), del	98.6
d1fnga1	101	Class II MHC alpha chain, C-terminal domain {Mouse	98.59
d2nxyb1	97	CD4 V-set domains {Human (Homo sapiens) [TaxId: 96	98.59
d1i1ca2	102	Immunoglobulin heavy chain gamma constant domain 3	98.59
d1hdmb1	98	Class II MHC beta chain, C-terminal domain {Human	98.58
d1rzfl2	102	Immunoglobulin light chain lambda constant domain,	98.58
d1hkfa_	108	NK cell activating receptor NKP44 {Human (Homo sap	98.58
d1de4a1	94	Hemochromatosis protein Hfe, alpha-3 domain {Human	98.58
d1l6xa2	102	Immunoglobulin heavy chain gamma constant domain 3	98.57
d1ugna1	96	Ligand binding domain of lir-1 (ilt2) {Human (Homo	98.57
d1ucta1	99	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	98.57
d1hdma1	103	Class II MHC alpha chain, C-terminal domain {Human	98.57
d1neua_	119	Myelin membrane adhesion molecule P0 {Rat (Rattus	98.57
d2bnqd1	113	T-cell antigen receptor {Human (Homo sapiens), alp	98.56
d1nezg_	122	CD8 {Mouse (Mus musculus) [TaxId: 10090]}	98.56
d1tvda_	116	T-cell antigen receptor {Human (Homo sapiens), del	98.56
d1dr9a2	95	CD80, second domain {Human (Homo sapiens) [TaxId:	98.56
d1o0va1	104	Immunoglobulin heavy chain epsilon constant domain	98.55
d1i8ka_	106	Immunoglobulin light chain kappa variable domain,	98.55
d3bp5a1	114	Programmed cell death protein 1, PD1, extracellula	98.55
d1uvqa1	99	Class II MHC alpha chain, C-terminal domain {Human	98.55
d1fo0b_	112	T-cell antigen receptor {Mouse (Mus musculus), bet	98.54
d1kcvl1	107	Immunoglobulin light chain kappa variable domain,	98.53
d1ymmd1	96	T-cell antigen receptor {Human (Homo sapiens), alp	98.53
d1u9ka_	110	TREM-1 (triggering receptor expressed on myeloid c	98.52
d1j1pl_	107	Immunoglobulin light chain kappa variable domain,	98.52
d1mjul2	107	Immunoglobulin light chain kappa constant domain,	98.51
d1olla1	95	Ligand binding domain of NK receptor NKp46 {Human	98.5
d1t7va1	94	Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Hu	98.5
d1vesa_	113	Novel antigen receptor 12Y-2 {Spotted wobbegong (O	98.5
d1mexl1	107	Immunoglobulin light chain kappa variable domain,	98.5
d2g5ra1	121	N-terminal domain of sialic acid binding Ig-like l	98.5
d1c5cl1	107	Immunoglobulin light chain kappa variable domain,	98.49
d1sq2n_	112	Novel antigen receptor (against lysozyme) {Nurse s	98.48
d1j8hd1	115	T-cell antigen receptor {Human (Homo sapiens), alp	98.47
d1jhll_	108	Immunoglobulin light chain kappa variable domain,	98.47
d1de4a1	94	Hemochromatosis protein Hfe, alpha-3 domain {Human	98.47
d1hxmb2	107	T-cell antigen receptor {Human (Homo sapiens), del	98.46
d1muja1	100	Class II MHC alpha chain, C-terminal domain {Mouse	98.46
d1op3k1	106	Immunoglobulin light chain kappa variable domain,	98.46
d1tjgl1	107	Immunoglobulin light chain kappa variable domain,	98.46
d1lk3l1	106	Immunoglobulin light chain kappa variable domain,	98.46
d1k5nb_	100	beta2-microglobulin {Human (Homo sapiens) [TaxId:	98.46
d1i9ea_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	98.45
d1f3dh1	115	Immunoglobulin heavy chain variable domain, VH {Mo	98.45
d1nfde2	104	Immunoglobulin light chain lambda constant domain,	98.45
d1fltx_	95	Second domain of the Flt-1 receptor {Human (Homo s	98.44
d1dn0b2	105	Immunoglobulin heavy chain mu constant domain 1, C	98.44
d1i8lc_	118	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	98.44
d3frua1	91	Fc (IgG) receptor, alpha-3 domain {Rat (Rattus nor	98.43
d1fp5a2	105	Immunoglobulin heavy chain epsilon constant domain	98.43
d1d5mb1	98	Class II MHC beta chain, C-terminal domain {Human	98.43
d2h26a1	96	CD1, alpha-3 domain {Human (Homo sapiens), CD1a [T	98.42
d2atpb1	115	CD8 {Mouse (Mus musculus), beta-chain [TaxId: 1009	98.42
d1bd2d1	111	T-cell antigen receptor {Human (Homo sapiens), alp	98.42
d1akjd_	114	CD8 {Human (Homo sapiens) [TaxId: 9606]}	98.41
d1ow0a2	108	Immunoglobulin heavy chain alpha constant domain 3	98.41
d1c5cl2	107	Immunoglobulin light chain kappa constant domain,	98.41
d1lk2b_	99	beta2-microglobulin {Mouse (Mus musculus) [TaxId:	98.41
d2agjh1	120	Immunoglobulin heavy chain variable domain, VH {En	98.4
d2mhaa1	89	Class I MHC, alpha-3 domain {Mouse (Mus musculus)	98.4
d7fabh1	116	Immunoglobulin heavy chain variable domain, VH {Hu	98.39
d1igtb3	119	Immunoglobulin heavy chain gamma constant domain 2	98.39
d2gj6d1	94	T-cell antigen receptor {Mouse (Mus musculus), bet	98.39
d1vgeh1	122	Immunoglobulin heavy chain variable domain, VH {Hu	98.38
d1mqkl_	109	Immunoglobulin light chain kappa variable domain,	98.38
d2ak4d1	114	T-cell antigen receptor {Human (Homo sapiens), alp	98.38
d1u3ha1	110	T-cell antigen receptor {Mouse (Mus musculus), alp	98.38
d1iqdb1	117	Immunoglobulin heavy chain variable domain, VH {Hu	98.37
d1xaua_	104	B and T lymphocyte attenuator, Btla {Mouse (Mus mu	98.37
d1d5il1	107	Immunoglobulin light chain kappa variable domain,	98.36
d1uvqb1	97	Class II MHC beta chain, C-terminal domain {Human	98.36
d1q0xl2	102	Immunoglobulin light chain lambda constant domain,	98.36
d1xaua_	104	B and T lymphocyte attenuator, Btla {Mouse (Mus mu	98.36
d1dr9a1	105	CD80, N-terminal domain {Human (Homo sapiens) [Tax	98.36
d1smoa_	113	TREM-1 (triggering receptor expressed on myeloid c	98.35
d2ij0c1	118	T-cell antigen receptor {Human (Homo sapiens), bet	98.34
d1qfoa_	118	N-terminal domain of sialoadhesin {Mouse (Mus musc	98.34
d8faba1	103	Immunoglobulin light chain lambda variable domain,	98.34
d2esvd1	110	T-cell antigen receptor {Human (Homo sapiens), alp	98.33
d1i1ca1	103	Immunoglobulin heavy chain gamma constant domain 2	98.33
d1c5db1	117	Immunoglobulin heavy chain variable domain, VH {Ra	98.33
d1fp5a1	103	Immunoglobulin heavy chain epsilon constant domain	98.33
d1l6xa1	105	Immunoglobulin heavy chain gamma constant domain 2	98.33
d1hdma1	103	Class II MHC alpha chain, C-terminal domain {Human	98.32
d1hyrc1	94	Class I MHC homolog, alpha-3 domain {Human (Homo s	98.31
d1nlbh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	98.31
d2jelh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	98.31
d1t7va1	94	Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Hu	98.31
d3frua1	91	Fc (IgG) receptor, alpha-3 domain {Rat (Rattus nor	98.3
d1bwwa_	109	Immunoglobulin light chain kappa variable domain,	98.3
d1qnzh_	119	Immunoglobulin heavy chain variable domain, VH {Mo	98.29
d1kxvc_	119	Camelid IG heavy chain variable domain, VHh {Camel	98.28
d1ogad1	115	T-cell antigen receptor {Human (Homo sapiens), alp	98.28
d1rhhb1	130	Immunoglobulin heavy chain variable domain, VH {Hu	98.28
d1pg7x1	120	Immunoglobulin heavy chain variable domain, VH {Mo	98.27
d2gsia1	111	Immunoglobulin light chain kappa variable domain,	98.27
d1mfah1	117	Immunoglobulin heavy chain variable domain, VH {Mo	98.27
d1f3rb2	119	Immunoglobulin light chain kappa variable domain,	98.27
d1hxma1	120	T-cell antigen receptor {Human (Homo sapiens), gam	98.27
d1yqvl1	104	Immunoglobulin light chain kappa variable domain,	98.26
d3b5ha2	80	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	98.26
d3cx5k1	107	Immunoglobulin light chain kappa variable domain,	98.26
d1jnhb1	117	Immunoglobulin heavy chain variable domain, VH {Mo	98.26
d1d5mb1	98	Class II MHC beta chain, C-terminal domain {Human	98.26
d1hdmb1	98	Class II MHC beta chain, C-terminal domain {Human	98.26
d1j05a_	111	Immunoglobulin light chain kappa variable domain,	98.26
d1rzfl1	111	Immunoglobulin light chain lambda variable domain,	98.26
d1cd0a_	111	Immunoglobulin light chain lambda variable domain,	98.25
d1fo0a_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	98.25
d1w72l1	109	Immunoglobulin light chain lambda variable domain,	98.25
d1hxmb1	123	T-cell antigen receptor {Human (Homo sapiens), del	98.25
d1kcvh2	101	Immunoglobulin heavy chain gamma constant domain 1	98.25
d1yjdc1	118	CD28 {Human (Homo sapiens) [TaxId: 9606]}	98.24
d1kxvc_	119	Camelid IG heavy chain variable domain, VHh {Camel	98.24
d1lgva1	112	Immunoglobulin light chain lambda variable domain,	98.24
d1mjul2	107	Immunoglobulin light chain kappa constant domain,	98.24
d1o0va1	104	Immunoglobulin heavy chain epsilon constant domain	98.24
d1mqkh_	123	Immunoglobulin heavy chain variable domain, VH {Mo	98.24
d1jpth1	117	Immunoglobulin heavy chain variable domain, VH {En	98.24
d1um5h1	117	Immunoglobulin heavy chain variable domain, VH {Mo	98.23
d1ac6a_	110	T-cell antigen receptor {Mouse (Mus musculus), alp	98.23
d2ck0h1	109	Immunoglobulin heavy chain variable domain, VH {Mo	98.23
d1dn0b1	120	Immunoglobulin heavy chain variable domain, VH {Hu	98.23
d1h5ba_	113	T-cell antigen receptor {Mouse (Mus musculus), alp	98.23
d1rzfl2	102	Immunoglobulin light chain lambda constant domain,	98.22
d2fbjh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	98.22
d1ieha_	135	Camelid IG heavy chain variable domain, VHh {Llama	98.21
d1mjuh1	116	Immunoglobulin heavy chain variable domain, VH {Mo	98.21
d1l6xa2	102	Immunoglobulin heavy chain gamma constant domain 3	98.21
d1mjul1	112	Immunoglobulin light chain kappa variable domain,	98.21
d1ncna_	110	CD86 (b7-2), N-terminal domain {Human (Homo sapien	98.21
d2fx7l1	108	Immunoglobulin light chain kappa variable domain,	98.2
d1u9ka_	110	TREM-1 (triggering receptor expressed on myeloid c	98.2
d1k5na1	95	Class I MHC, alpha-3 domain {Human (Homo sapiens)	98.2
d1a2yb_	116	Immunoglobulin heavy chain variable domain, VH {Mo	98.2
d1ucta2	96	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	98.2
d1j05b_	121	Immunoglobulin heavy chain variable domain, VH {Mo	98.19
d1q9ra1	113	Immunoglobulin light chain kappa variable domain,	98.19
d1mjuh2	102	Immunoglobulin heavy chain gamma constant domain 1	98.19
d2rhea_	114	Immunoglobulin light chain lambda variable domain,	98.19
d1indh1	114	Immunoglobulin heavy chain variable domain, VH {Mo	98.19
d1cqka_	101	Immunoglobulin heavy chain gamma constant domain 3	98.19
d2agjh1	120	Immunoglobulin heavy chain variable domain, VH {En	98.18
d1ypzf1	120	T-cell antigen receptor {Human (Homo sapiens), gam	98.18
d1ncwl1	112	Immunoglobulin light chain kappa variable domain,	98.18
d1nkra2	99	Killer cell inhibitory receptor {Human (Homo sapie	98.18
d1sjva_	107	Camelid IG heavy chain variable domain, VHh {Llama	98.17
d1igtb4	102	Immunoglobulin heavy chain gamma constant domain 3	98.17
d2aq2a1	110	T-cell antigen receptor {Mouse (Mus musculus), bet	98.17
d1hxmb2	107	T-cell antigen receptor {Human (Homo sapiens), del	98.17
d1ct8b1	118	Immunoglobulin heavy chain variable domain, VH {Mo	98.17
d1kgcd1	112	T-cell antigen receptor {Human (Homo sapiens), alp	98.17
d1rz7h1	119	Immunoglobulin heavy chain variable domain, VH {Hu	98.17
d1rihh1	125	Immunoglobulin heavy chain variable domain, VH {Mo	98.17
d1n0xh1	127	Immunoglobulin heavy chain variable domain, VH {Hu	98.16
d1fnga1	101	Class II MHC alpha chain, C-terminal domain {Mouse	98.16
d1ncwh1	119	Immunoglobulin heavy chain variable domain, VH {Mo	98.16
d1iqdb1	117	Immunoglobulin heavy chain variable domain, VH {Hu	98.15
d1eapb1	119	Immunoglobulin heavy chain variable domain, VH {Mo	98.15
d1dn0b2	105	Immunoglobulin heavy chain mu constant domain 1, C	98.14
d1k5na1	95	Class I MHC, alpha-3 domain {Human (Homo sapiens)	98.14
d3b5ha2	80	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	98.14
d1ogae1	114	T-cell antigen receptor {Human (Homo sapiens), bet	98.14
d2fx7h1	127	Immunoglobulin heavy chain variable domain, VH {Hu	98.14
d1i1ca2	102	Immunoglobulin heavy chain gamma constant domain 3	98.14
d1tjgh1	132	Immunoglobulin heavy chain variable domain, VH {En	98.14
d1ogae2	127	T-cell antigen receptor {Human (Homo sapiens), bet	98.14
d1f3dh1	115	Immunoglobulin heavy chain variable domain, VH {Mo	98.13
d1dn0b1	120	Immunoglobulin heavy chain variable domain, VH {Hu	98.13
d1fp5a1	103	Immunoglobulin heavy chain epsilon constant domain	98.13
d1oaql_	110	Immunoglobulin light chain lambda variable domain,	98.13
d1bz7b1	122	Immunoglobulin heavy chain variable domain, VH {Mo	98.13
d1c5db1	117	Immunoglobulin heavy chain variable domain, VH {Ra	98.13
d1mjuh1	116	Immunoglobulin heavy chain variable domain, VH {Mo	98.12
d7fabh1	116	Immunoglobulin heavy chain variable domain, VH {Hu	98.12
d2p49b1	121	Camelid IG heavy chain variable domain, VHh {Camel	98.12
d1etzb1	126	Immunoglobulin heavy chain variable domain, VH {Mo	98.12
d1jnhb1	117	Immunoglobulin heavy chain variable domain, VH {Mo	98.12
d1yedb1	124	Immunoglobulin heavy chain variable domain, VH {Mo	98.12
d1nlbh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	98.12
d1zvya1	124	Camelid IG heavy chain variable domain, VHh {Camel	98.12
d2jelh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	98.12
d1ai1h1	120	Immunoglobulin heavy chain variable domain, VH {Mo	98.12
d2fb4h1	127	Immunoglobulin heavy chain variable domain, VH {Hu	98.12
d1uvqa1	99	Class II MHC alpha chain, C-terminal domain {Human	98.12
d2b1hh1	124	Immunoglobulin heavy chain variable domain, VH {En	98.11
d2ck0h1	109	Immunoglobulin heavy chain variable domain, VH {Mo	98.1
d1oari_	103	Immunoglobulin heavy chain variable domain, VH {Ra	98.1
d1n4xl_	113	Immunoglobulin light chain kappa variable domain,	98.1
d1oari_	103	Immunoglobulin heavy chain variable domain, VH {Ra	98.1
d1jpth1	117	Immunoglobulin heavy chain variable domain, VH {En	98.1
d1r0ah1	123	Immunoglobulin heavy chain variable domain, VH {Mo	98.1
d1ol0a_	121	Immunoglobulin heavy chain variable domain, VH {En	98.1
d1nkra1	96	Killer cell inhibitory receptor {Human (Homo sapie	98.1
d2fbjh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	98.09
d1nfde1	108	Immunoglobulin light chain lambda variable domain,	98.09
d1ad9b1	120	Immunoglobulin heavy chain variable domain, VH {En	98.09
d1kcvh2	101	Immunoglobulin heavy chain gamma constant domain 1	98.09
d1um5h1	117	Immunoglobulin heavy chain variable domain, VH {Mo	98.09
d1dlfh_	120	Immunoglobulin heavy chain variable domain, VH {Mo	98.09
d1c5cl2	107	Immunoglobulin light chain kappa constant domain,	98.08
d2nxyd1	128	Immunoglobulin heavy chain variable domain, VH {Hu	98.08
d1dfbh1	126	Immunoglobulin heavy chain variable domain, VH {Hu	98.08
d1mfah1	117	Immunoglobulin heavy chain variable domain, VH {Mo	98.08
d2ntsp1	113	T-cell antigen receptor {Human (Homo sapiens), bet	98.08
d1lmka1	126	Immunoglobulin heavy chain variable domain, VH {Mo	98.08
d2esve1	111	T-cell antigen receptor {Human (Homo sapiens), bet	98.08
d1igtb3	119	Immunoglobulin heavy chain gamma constant domain 2	98.07
d1nfde2	104	Immunoglobulin light chain lambda constant domain,	98.07
d1kgce1	112	T-cell antigen receptor {Human (Homo sapiens), bet	98.07
d1ow0a2	108	Immunoglobulin heavy chain alpha constant domain 3	98.06
d1ieha_	135	Camelid IG heavy chain variable domain, VHh {Llama	98.06
d1a2yb_	116	Immunoglobulin heavy chain variable domain, VH {Mo	98.06
d1indh1	114	Immunoglobulin heavy chain variable domain, VH {Mo	98.06
d1lo4h1	118	Immunoglobulin heavy chain variable domain, VH {Mo	98.05
d1sjva_	107	Camelid IG heavy chain variable domain, VHh {Llama	98.05
d1ct8b1	118	Immunoglobulin heavy chain variable domain, VH {Mo	98.05
d1op3h1	125	Immunoglobulin heavy chain variable domain, VH {En	98.05
d1uvqb1	97	Class II MHC beta chain, C-terminal domain {Human	98.04
d1rzga1	130	Immunoglobulin heavy chain variable domain, VH {Hu	98.04
d1ugna1	96	Ligand binding domain of lir-1 (ilt2) {Human (Homo	98.04
d2p49b1	121	Camelid IG heavy chain variable domain, VHh {Camel	98.04
d1ugna2	98	Ligand binding domain of lir-1 (ilt2) {Human (Homo	98.04
d1i8lc_	118	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	98.03
d1rjca1	126	Camelid IG heavy chain variable domain, VHh {Camel	98.03
d2h26a1	96	CD1, alpha-3 domain {Human (Homo sapiens), CD1a [T	98.03
d1vgeh1	122	Immunoglobulin heavy chain variable domain, VH {Hu	98.03
d1xiwa_	91	CD3 epsilon chain ectodomain fragment {Human (Homo	98.03
d1qnzh_	119	Immunoglobulin heavy chain variable domain, VH {Mo	98.03
d1dqta_	117	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	98.02
d1i1ca1	103	Immunoglobulin heavy chain gamma constant domain 2	98.02
d1jbja2	100	CD3 epsilon chain ectodomain fragment {Mouse (Mus	98.02
d1hyrc1	94	Class I MHC homolog, alpha-3 domain {Human (Homo s	98.01
d1eapb1	119	Immunoglobulin heavy chain variable domain, VH {Mo	98.01
d2fbjh2	102	Immunoglobulin heavy chain alpha constant domain 1	98.01
d1rz7h1	119	Immunoglobulin heavy chain variable domain, VH {Hu	98.01
d1q9rb1	122	Immunoglobulin heavy chain variable domain, VH {Mo	98.01
d1ncwh1	119	Immunoglobulin heavy chain variable domain, VH {Mo	98.01
d1pg7x1	120	Immunoglobulin heavy chain variable domain, VH {Mo	98.0
d1n0xh1	127	Immunoglobulin heavy chain variable domain, VH {Hu	98.0
d1j8he1	113	T-cell antigen receptor {Human (Homo sapiens), bet	98.0
d1rjca1	126	Camelid IG heavy chain variable domain, VHh {Camel	98.0
d2bnub1	112	T-cell antigen receptor {Human (Homo sapiens), bet	97.99
d1mqkh_	123	Immunoglobulin heavy chain variable domain, VH {Mo	97.99
d1zvya1	124	Camelid IG heavy chain variable domain, VHh {Camel	97.99
d1l6xa1	105	Immunoglobulin heavy chain gamma constant domain 2	97.99
d1lo4h1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.99
d1rzfh1	133	Immunoglobulin heavy chain variable domain, VH {Hu	97.98
d1mjuh2	102	Immunoglobulin heavy chain gamma constant domain 1	97.98
d1i3ua_	127	Camelid IG heavy chain variable domain, VHh {Llama	97.98
d1olla2	93	Ligand binding domain of NK receptor NKp46 {Human	97.97
d2nxyd1	128	Immunoglobulin heavy chain variable domain, VH {Hu	97.97
d1rihh1	125	Immunoglobulin heavy chain variable domain, VH {Mo	97.96
d1dlfh_	120	Immunoglobulin heavy chain variable domain, VH {Mo	97.95
d2mhaa1	89	Class I MHC, alpha-3 domain {Mouse (Mus musculus)	97.95
d2fx7h1	127	Immunoglobulin heavy chain variable domain, VH {Hu	97.95
d1j05b_	121	Immunoglobulin heavy chain variable domain, VH {Mo	97.95
d1yedb1	124	Immunoglobulin heavy chain variable domain, VH {Mo	97.95
d1fn4b1	116	Immunoglobulin heavy chain variable domain, VH {Ra	97.95
d1dfbh1	126	Immunoglobulin heavy chain variable domain, VH {Hu	97.94
d1ad9b1	120	Immunoglobulin heavy chain variable domain, VH {En	97.93
d1lmka1	126	Immunoglobulin heavy chain variable domain, VH {Mo	97.93
d1nfdf1	121	Immunoglobulin heavy chain variable domain, VH {Ha	97.93
d1c5ch2	103	Immunoglobulin heavy chain gamma constant domain 1	97.93
d1bz7b1	122	Immunoglobulin heavy chain variable domain, VH {Mo	97.93
d2b1hh1	124	Immunoglobulin heavy chain variable domain, VH {En	97.92
d1rhhb1	130	Immunoglobulin heavy chain variable domain, VH {Hu	97.92
d3c2ah1	131	Immunoglobulin heavy chain variable domain, VH {Hu	97.92
d1tjgh1	132	Immunoglobulin heavy chain variable domain, VH {En	97.92
d3cx5j1	127	Immunoglobulin heavy chain variable domain, VH {Mo	97.91
d1ol0a_	121	Immunoglobulin heavy chain variable domain, VH {En	97.91
d1ymmd1	96	T-cell antigen receptor {Human (Homo sapiens), alp	97.91
d1xiwa_	91	CD3 epsilon chain ectodomain fragment {Human (Homo	97.9
d1etzb1	126	Immunoglobulin heavy chain variable domain, VH {Mo	97.9
d2fbjh2	102	Immunoglobulin heavy chain alpha constant domain 1	97.89

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.83  E-value=2.1e-20  Score=111.72  Aligned_cols=88  Identities=27%  Similarity=0.510  Sum_probs=77.9

Q ss_pred             CCeeEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEE
Q psy7036           8 APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVK   87 (254)
Q Consensus         8 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~   87 (254)
                      .|.|...|.+..+.+|+++.|.|.+.|.|.+.++|+|||..+....++.+.   .+      .|.|.+++.+|+|.|+|.
T Consensus         1 kP~f~~~~~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~g~~i~~~~~~~~~---~~------~L~i~~v~~~D~G~Y~C~   71 (89)
T d1cs6a4           1 QPDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVS---GG------ELRFSKLVLEDSGMYQCV   71 (89)
T ss_dssp             EEEEEECCCCEEEETTCCEEEECEEEEESCCEEEEEETTEECCCCSSEEEE---TT------EEEESSCCGGGCEEEEEE
T ss_pred             CCCeEEECCCEEECCCCcEEEEEEEEEEcCCEEEEEEeeccccccceeeee---ee------eEEEEeecccCCEEEEEE
Confidence            388999999999999999999999999999999999999999877665442   11      799999999999999999


Q ss_pred             EEcCCCceEEEEEEEEe
Q psy7036          88 AKNKMGEVAASINLNFS  104 (254)
Q Consensus        88 ~~~~~~~~~~~~~l~v~  104 (254)
                      +.|..|.....+.|.|.
T Consensus        72 a~N~~G~~~~~~~l~V~   88 (89)
T d1cs6a4          72 AENKHGTVYASAELTVQ   88 (89)
T ss_dssp             EEETTEEEEEEEEEEEE
T ss_pred             EEeCCCEEEEEEEEEEE
Confidence            99999998888888874

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.82  E-value=8.9e-20  Score=111.35  Aligned_cols=93  Identities=22%  Similarity=0.337  Sum_probs=81.1

Q ss_pred             CCeeEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEE
Q psy7036           8 APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVK   87 (254)
Q Consensus         8 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~   87 (254)
                      +|.|...+++..+.+|+++.|.|.+.|.|.+.++||||+..+....+........    ..+.|.|.++...|+|.|+|.
T Consensus         4 aP~f~~~~~~~~v~~g~~v~l~c~v~g~P~p~v~W~k~~~~i~~~~~~~~~~~~~----~~~~L~I~~~~~~D~G~Y~c~   79 (98)
T d1g1ca_           4 APKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPED----NVCELVIRDVTGEDSASIMVK   79 (98)
T ss_dssp             EEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEEEET----TEEEEEECSCCGGGCEEEEEE
T ss_pred             CCeEecCCCcEEEcCCCcEEEEEEEEEecCCeEEEEeCceEEeeeeeeEEEeccc----eEEEEEeccCccccCEEEEEE
Confidence            6899999999999999999999999999999999999999998776654433222    234799999999999999999


Q ss_pred             EEcCCCceEEEEEEEEe
Q psy7036          88 AKNKMGEVAASINLNFS  104 (254)
Q Consensus        88 ~~~~~~~~~~~~~l~v~  104 (254)
                      +.|..|.....+.|.|.
T Consensus        80 a~N~~G~~~~~~~L~V~   96 (98)
T d1g1ca_          80 AINIAGETSSHAFLLVQ   96 (98)
T ss_dssp             EEETTEEEEEEEEEEEE
T ss_pred             EEECCcEEEEEEEEEEE
Confidence            99999999888988885

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

Probab=99.82  E-value=6.7e-20  Score=112.76  Aligned_cols=95  Identities=23%  Similarity=0.439  Sum_probs=82.9

Q ss_pred             CCCCeeEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEE
Q psy7036           6 DFAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYK   85 (254)
Q Consensus         6 ~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~   85 (254)
                      ..+|.|...|.+..+.+|+++.|.|.+.|.|.+.+.|+|||..+....++.+....    ...+.|.|.+++..|+|.|+
T Consensus         6 ~~~P~f~~~~~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~~~~i~~~~~~~~~~~~----~~~~~L~I~~~~~~D~G~Y~   81 (102)
T d1fhga_           6 HVKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDE----EGNCSLTISEVCGDDDAKYT   81 (102)
T ss_dssp             CEEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCSSSEEEEECT----TCEEEEEESSCCGGGCEEEE
T ss_pred             CCCCeEEcCCCcEEEecCCcEEEEEEEEeccCCeEEEEeeeccccceeeEeEEEec----CceeeeEecCCCHHhCEEEE
Confidence            35789999999999999999999999999999999999999999887776654332    22448999999999999999


Q ss_pred             EEEEcCCCceEEEEEEEEe
Q psy7036          86 VKAKNKMGEVAASINLNFS  104 (254)
Q Consensus        86 C~~~~~~~~~~~~~~l~v~  104 (254)
                      |.+.|..|....++.|.|.
T Consensus        82 C~a~N~~G~~~~~~~L~V~  100 (102)
T d1fhga_          82 CKAVNSLGEATCTAELLVE  100 (102)
T ss_dssp             EEEEETTEEEEEEEEEEEE
T ss_pred             EEEEECCcEEEEEEEEEEE
Confidence            9999999999888888875

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=7.4e-20  Score=112.28  Aligned_cols=92  Identities=17%  Similarity=0.273  Sum_probs=81.1

Q ss_pred             CeeEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEE
Q psy7036           9 PSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKA   88 (254)
Q Consensus         9 p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~   88 (254)
                      |.|...|+...+.+|+++.|.|.+.|.|.+.+.|+|++..+....++.+....     ..+.|.|.+++..|+|.|+|.+
T Consensus         1 P~~~~~p~~~~v~~G~~~~l~C~v~g~p~p~v~W~k~~~~l~~~~~~~~~~~~-----~~~~L~I~~~~~~D~G~Y~C~a   75 (101)
T d2cqva1           1 PQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSE-----NGSKLTILAARQEHCGCYTLLV   75 (101)
T ss_dssp             CEESCCCCSEEEETTCCEEEEEEEESSSSCEEEEEESSSBCCCSSSEEEEECS-----SEEEEEETTCCTTTCEEEEEEE
T ss_pred             CeEEeeCCcEEEeCCCcEEEEEEEEecCCCEEEEEeCceeeccCCcEEEEEec-----ceeEEEEeeCCcccCEEEEEEE
Confidence            77888899999999999999999999999999999999999877776654332     2347999999999999999999


Q ss_pred             EcCCCceEEEEEEEEec
Q psy7036          89 KNKMGEVAASINLNFSR  105 (254)
Q Consensus        89 ~~~~~~~~~~~~l~v~~  105 (254)
                      .|..|.....+.|.|.+
T Consensus        76 ~N~~G~~~~~~~l~V~~   92 (101)
T d2cqva1          76 ENKLGSRQAQVNLTVVD   92 (101)
T ss_dssp             ECSSCEEECCEEEEEEC
T ss_pred             EECCCEEEEEEEEEEEe
Confidence            99999999999999975

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.82  E-value=3e-20  Score=113.24  Aligned_cols=93  Identities=27%  Similarity=0.494  Sum_probs=80.4

Q ss_pred             CCeeEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEE
Q psy7036           8 APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVK   87 (254)
Q Consensus         8 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~   87 (254)
                      .|.|+..|.+..+.+|+++.|.|.+.|.|.+.++|++++..+....++.+..     ....+.|.|.+++..|+|.|+|.
T Consensus         1 ~P~f~~~p~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~~~~l~~~~~~~~~~-----~~~~~~L~I~~~~~~D~G~Y~C~   75 (97)
T d1koaa1           1 QPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRY-----NGNDYGLTINRVKGDDKGEYTVR   75 (97)
T ss_dssp             SCEEEECCCCCEEETTSCEEEEEEEECSSCCEEEEEETTEECCSBTTBBCCC-----STTEEEEEESCCCSGGGSCEEEE
T ss_pred             CCEEEEeCCCEEEeCCCcEEEEEEEEEcCCCEEEEEEeeeccceeeEEEEEe-----cCCeeEEEeCCCceecCEEEEEE
Confidence            4899999999999999999999999999999999999999998766654422     12344799999999999999999


Q ss_pred             EEcCCCceEEEEEEEEec
Q psy7036          88 AKNKMGEVAASINLNFSR  105 (254)
Q Consensus        88 ~~~~~~~~~~~~~l~v~~  105 (254)
                      +.|..|.....+.|.|..
T Consensus        76 a~N~~G~~~~~~~l~V~~   93 (97)
T d1koaa1          76 AKNSYGTKEEIVFLNVTR   93 (97)
T ss_dssp             EEETTEEEEEEECCEEEC
T ss_pred             EEECCCEEEEEEEEEEee
Confidence            999999988888888863

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.81  E-value=6.3e-20  Score=110.87  Aligned_cols=92  Identities=18%  Similarity=0.333  Sum_probs=80.3

Q ss_pred             CCCeeEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEE
Q psy7036           7 FAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKV   86 (254)
Q Consensus         7 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C   86 (254)
                      .+|.|...+++..+.+|+++.|.|.+.|.|.+.++|++++..+....+.......     ..+.|.|.+++..|+|.|+|
T Consensus         1 l~P~i~~~~~~~~v~~G~~~~l~c~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~-----~~~~L~I~~~~~~D~G~Y~c   75 (93)
T d1wiua_           1 LKPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKS-----STTSIFFPSAKRADSGNYKL   75 (93)
T ss_dssp             CCCEECCCCCEEEECSSBCCEEEEEEECCSSCEEEEECSSSSCBCSTTSEEEEET-----TEEEEECTTBCGGGCEEEEE
T ss_pred             CCCeEEeCCCcEEEeCCCeEEEEEEEEEecCCeEEEEeeeeeceeeeeeeecccc-----cceeeccccccccccEEEEE
Confidence            3789999999999999999999999999999999999999988877766554332     23479999999999999999


Q ss_pred             EEEcCCCceEEEEEEEE
Q psy7036          87 KAKNKMGEVAASINLNF  103 (254)
Q Consensus        87 ~~~~~~~~~~~~~~l~v  103 (254)
                      .|.|..|.....+.|.|
T Consensus        76 ~a~N~~G~~~~~~~l~V   92 (93)
T d1wiua_          76 KVKNELGEDEAIFEVIV   92 (93)
T ss_dssp             EEEETTEEEEEEEEEEE
T ss_pred             EEEECCCEEEEEEEEEE
Confidence            99999999888888876

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.79  E-value=6.1e-19  Score=105.32  Aligned_cols=86  Identities=26%  Similarity=0.476  Sum_probs=72.1

Q ss_pred             CCeeEeCCCc-eeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEE
Q psy7036           8 APSFTQKPQL-RQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKV   86 (254)
Q Consensus         8 ~p~~~~~~~~-~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C   86 (254)
                      +|.|...|.. ..+.+|+++.|.|.+.|.|.+.++|+++|..+... +..+.   .+      .|.|.+++..|+|.|+|
T Consensus         2 aP~f~~~p~~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~~~~i~~~-~~~~~---~~------~L~i~~v~~~d~G~Y~C   71 (89)
T d1biha4           2 APKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGG-RATVT---DS------GLVIKGVKNGDKGYYGC   71 (89)
T ss_dssp             EEEEEECCCSEEEECTTSCEEEECEEEEESCCCCEEEETTEECCSS-SEEEE---TT------EEEESSCCSTTCEEEEE
T ss_pred             CCeEEECCCCCEEEeCCCeEEEEEEEEEeCCCEEEEEeCCccCccc-cEEEe---ee------eEEECCCChhhCEEEEE
Confidence            5888887754 57899999999999999999999999999998653 32221   11      69999999999999999


Q ss_pred             EEEcCCCceEEEEEEEE
Q psy7036          87 KAKNKMGEVAASINLNF  103 (254)
Q Consensus        87 ~~~~~~~~~~~~~~l~v  103 (254)
                      .+.|..|.....+.|.|
T Consensus        72 ~a~N~~G~~~~~~~l~V   88 (89)
T d1biha4          72 RATNEHGDKYFETLVQV   88 (89)
T ss_dssp             EEEETTEEEEEEEEEEE
T ss_pred             EEEECCCEEEEEEEEEE
Confidence            99999998888888776

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.79  E-value=6.3e-20  Score=110.34  Aligned_cols=89  Identities=29%  Similarity=0.485  Sum_probs=76.3

Q ss_pred             eEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEc
Q psy7036          11 FTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKN   90 (254)
Q Consensus        11 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~   90 (254)
                      |...|++..+.+|+++.|.|.+.|.|.|.+.|+++|..+....+..+....     ..+.|.|.+++..|+|.|+|.+.|
T Consensus         2 ii~~P~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~-----~~~~L~i~~v~~~D~G~Y~C~a~N   76 (91)
T d1tnna_           2 ILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTK-----YKSTFEISSVQASDEGNYSVVVEN   76 (91)
T ss_dssp             CSBCCCCEECSSSSCCCEEEECCCSSCCCCEEESSSSTTCSSSSCEEEECS-----SEEEEECSSCCSCCCEEEEEECBC
T ss_pred             EEeCCcCEEEeCCCcEEEEEEEEEEeCCeEEEEEeecccccccceeeeeec-----ceeEEeecCCCHHHCEEEEEEEEE
Confidence            566788899999999999999999999999999999988777666554332     234899999999999999999999


Q ss_pred             CCCceEEEEEEEEe
Q psy7036          91 KMGEVAASINLNFS  104 (254)
Q Consensus        91 ~~~~~~~~~~l~v~  104 (254)
                      ..|.....+.|.|.
T Consensus        77 ~~G~~~~~~~l~V~   90 (91)
T d1tnna_          77 SEGKQEAEFTLTIQ   90 (91)
T ss_dssp             SSCBCCEEEEEECC
T ss_pred             CCCEEEEEEEEEEE
Confidence            99998888888774

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.78  E-value=1.2e-18  Score=106.61  Aligned_cols=94  Identities=21%  Similarity=0.344  Sum_probs=73.4

Q ss_pred             CCeeEeCCCce--eecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEE
Q psy7036           8 APSFTQKPQLR--QEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYK   85 (254)
Q Consensus         8 ~p~~~~~~~~~--~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~   85 (254)
                      ||.|...+...  .+.+|+++.|.|.+.|.|.+.++|+++|..+...............   .+.|.|.+++..|+|.|+
T Consensus         3 PP~i~~~~~~~~~t~~~G~~v~l~C~~~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~---~~~L~I~~v~~~D~G~Y~   79 (100)
T d1qz1a3           3 PPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDD---SSELTIRNVDKNDEAEYV   79 (100)
T ss_dssp             EEEEEESCSEEEEETTSCCCEEEEEEEEEESCCEEEEEETTEECCCC--CCSSEEECTT---SCEEEECSCCGGGCEEEE
T ss_pred             CCEEEeCCCceeEEEcCCCCEEEEEEEEEecCCEEEEEeCCcccccccccceeEEeecC---ceEEEeCCCCcccCEEEE
Confidence            68887766554  5678999999999999999999999999988654332211111111   127999999999999999


Q ss_pred             EEEEcCCCceEEEEEEEEe
Q psy7036          86 VKAKNKMGEVAASINLNFS  104 (254)
Q Consensus        86 C~~~~~~~~~~~~~~l~v~  104 (254)
                      |.+.|..|.....+.|.|.
T Consensus        80 C~a~N~~G~~~~~~~l~V~   98 (100)
T d1qz1a3          80 CIAENKAGEQDASIHLKVF   98 (100)
T ss_dssp             EEEEETTEEEEEEEEEEEE
T ss_pred             EEEEECCCEEEEEEEEEEE
Confidence            9999999998888888885

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.77  E-value=1.6e-18  Score=104.24  Aligned_cols=90  Identities=14%  Similarity=0.288  Sum_probs=76.0

Q ss_pred             CCeeEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEE
Q psy7036           8 APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVK   87 (254)
Q Consensus         8 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~   87 (254)
                      .+.|...|.+..+.+|+++.|.|.+.|.|.+.++|++++..+.............+      .|.|.+++..|+|.|+|.
T Consensus         1 k~~F~~~P~~~~v~~G~~~~l~C~v~g~p~p~v~W~~~~~~i~~~~~~~~~~~~~~------~L~I~~~~~~D~G~Y~C~   74 (92)
T d1epfa2           1 KLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNN------YLQIRGIKKTDEGTYRCE   74 (92)
T ss_dssp             CSEEEECCSSEECCTTSCEEECCEEECSSCCEEEEEETTEEGGGGCCTTEEECTTS------CEEETTCCGGGCEEEEEE
T ss_pred             CcEEEEcCCCEEEeCCCcEEEEEEEeecCCCeEEEEEcCcccccccceeeeeeeee------eEEECCCCHHhCEEEEEE
Confidence            36788999999999999999999999999999999999999887766555444332      599999999999999999


Q ss_pred             EEcCCCceEEEEEEEE
Q psy7036          88 AKNKMGEVAASINLNF  103 (254)
Q Consensus        88 ~~~~~~~~~~~~~l~v  103 (254)
                      +.|..+.......+.|
T Consensus        75 a~n~~~~~~~~~~i~V   90 (92)
T d1epfa2          75 GRILARGEINFKDIQV   90 (92)
T ss_dssp             EEEGGGTEEEEEEEEE
T ss_pred             EEECcCCEEEEEEEEE
Confidence            9998776666666665

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

Probab=99.76  E-value=1.1e-18  Score=106.02  Aligned_cols=83  Identities=20%  Similarity=0.405  Sum_probs=68.0

Q ss_pred             ceeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcCCCceE
Q psy7036          17 LRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVA   96 (254)
Q Consensus        17 ~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~   96 (254)
                      ...+.+|+++.|.|.+.|.|.+.++|+|||..+....+........+    .++|.|.+++..|+|.|+|.+.|..|...
T Consensus        14 ~~~v~~G~~v~l~C~~~g~P~p~i~W~kng~~l~~~~~~~~~~~~~~----~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~   89 (97)
T d3dara1          14 LHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQ----HWSLIMESVVPSDKGNYTCVVENEYGSIN   89 (97)
T ss_dssp             EEEECTTCCEEEECCEEEESCCEEEEEETTEECCGGGSTTCCEEEGG----GTEEEECSCCGGGCEEEEEEEEETTEEEE
T ss_pred             cEEECCCCcEEEEEEEeEECCCEEEEEECCEeccccCceeeEEEcCC----cEEEEECCCCcccCEEEEEEEEECCCEEE
Confidence            35678999999999999999999999999999976554332221111    12799999999999999999999999988


Q ss_pred             EEEEEEE
Q psy7036          97 ASINLNF  103 (254)
Q Consensus        97 ~~~~l~v  103 (254)
                      ..+.|.|
T Consensus        90 ~~~~l~V   96 (97)
T d3dara1          90 HTYHLDV   96 (97)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEE
Confidence            8888877

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

Probab=99.76  E-value=6.6e-18  Score=103.66  Aligned_cols=94  Identities=31%  Similarity=0.544  Sum_probs=79.2

Q ss_pred             CCccccCCCeeeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEE
Q psy7036         112 APTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTA  191 (254)
Q Consensus       112 ~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~  191 (254)
                      +|.+...+....+..|+.+.|.|.+.|.|.|.+.|++++..+.......+....++.   +.|.|.++..+|.|.|+|.|
T Consensus         8 ~P~f~~~~~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~~~~i~~~~~~~~~~~~~~~---~~L~I~~~~~~D~G~Y~C~a   84 (102)
T d1fhga_           8 KPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGN---CSLTISEVCGDDDAKYTCKA   84 (102)
T ss_dssp             EEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCSSSEEEEECTTCE---EEEEESSCCGGGCEEEEEEE
T ss_pred             CCeEEcCCCcEEEecCCcEEEEEEEEeccCCeEEEEeeeccccceeeEeEEEecCce---eeeEecCCCHHhCEEEEEEE
Confidence            455555667778889999999999999999999999999999877766655544432   37999999999999999999


Q ss_pred             EcCCCcceEEEEEEEec
Q psy7036         192 KNELGESNATISLNFDS  208 (254)
Q Consensus       192 ~~~~~~~~~~~~~~v~~  208 (254)
                      .|..|....++.|.|..
T Consensus        85 ~N~~G~~~~~~~L~V~s  101 (102)
T d1fhga_          85 VNSLGEATCTAELLVET  101 (102)
T ss_dssp             EETTEEEEEEEEEEEEC
T ss_pred             EECCcEEEEEEEEEEEE
Confidence            99999998888888863

>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Tyrosine-protein kinase receptor tyro3, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=4.9e-18  Score=100.06  Aligned_cols=82  Identities=22%  Similarity=0.430  Sum_probs=67.2

Q ss_pred             CCeeEeCCCceeecCCCeEEEEEEEeeCCCC-ceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEE
Q psy7036           8 APSFTQKPQLRQEDEGNRLIFECQLLCNPKP-DIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKV   86 (254)
Q Consensus         8 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C   86 (254)
                      .|.|+..|.+..+.+|+++.|.|.+.|.|.| .++|+|||..+......              .+.|......|+|.|+|
T Consensus         1 ~P~f~~~P~~~~v~~G~~~~l~C~~~g~P~P~~i~W~k~g~~i~~~~~~--------------~~~l~~~~~~d~G~Y~C   66 (85)
T d1rhfa2           1 VPFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPAPS--------------PSVLNVTGVTQSTMFSC   66 (85)
T ss_dssp             SCEEEECCCCEEECTTCCEEEEEEEECSSSCCEEEEEETTEECSCSEES--------------SEEEEECCCSSCEEEEE
T ss_pred             CCcEEEeCCcEEEcCCCEEEEEEEEecCCcceEEEEEECCEECCCCCCc--------------ceEEecCCccccEEEEE
Confidence            4899999999999999999999999999987 89999999988654321              24566667789999999


Q ss_pred             EEEcCCCceE-EEEEEEE
Q psy7036          87 KAKNKMGEVA-ASINLNF  103 (254)
Q Consensus        87 ~~~~~~~~~~-~~~~l~v  103 (254)
                      .|.|..|... ..+.|.|
T Consensus        67 ~A~N~~G~~~S~~~~v~V   84 (85)
T d1rhfa2          67 EAHNLKGLASSRTATVHL   84 (85)
T ss_dssp             EEEETTEEEECCCEEEEE
T ss_pred             EEEcCCCcEEEEEEEEEE
Confidence            9999998643 3566655

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=1.4e-17  Score=101.96  Aligned_cols=91  Identities=20%  Similarity=0.364  Sum_probs=76.6

Q ss_pred             cccCCCeeeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcC
Q psy7036         115 FLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNE  194 (254)
Q Consensus       115 ~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~  194 (254)
                      +...+....+..|+.+.|.|.+.+.|.+.+.|++++..+....+..+....+.    +.|.|.++..+|+|.|+|.|.|.
T Consensus         3 ~~~~p~~~~v~~G~~~~l~C~v~g~p~p~v~W~k~~~~l~~~~~~~~~~~~~~----~~L~I~~~~~~D~G~Y~C~a~N~   78 (101)
T d2cqva1           3 IIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENG----SKLTILAARQEHCGCYTLLVENK   78 (101)
T ss_dssp             ESCCCCSEEEETTCCEEEEEEEESSSSCEEEEEESSSBCCCSSSEEEEECSSE----EEEEETTCCTTTCEEEEEEEECS
T ss_pred             EEeeCCcEEEeCCCcEEEEEEEEecCCCEEEEEeCceeeccCCcEEEEEecce----eEEEEeeCCcccCEEEEEEEEEC
Confidence            34445667788999999999999999999999999999877766655544332    47999999999999999999999


Q ss_pred             CCcceEEEEEEEecC
Q psy7036         195 LGESNATISLNFDSD  209 (254)
Q Consensus       195 ~~~~~~~~~~~v~~~  209 (254)
                      .|....++.|.|...
T Consensus        79 ~G~~~~~~~l~V~~~   93 (101)
T d2cqva1          79 LGSRQAQVNLTVVDK   93 (101)
T ss_dssp             SCEEECCEEEEEECS
T ss_pred             CCEEEEEEEEEEEec
Confidence            999998988888853

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=2.1e-17  Score=102.92  Aligned_cols=99  Identities=18%  Similarity=0.282  Sum_probs=77.3

Q ss_pred             CCCeeEeCCCceeecCCCeEEEEEEEeeCC---CCceEEEeCCEEeee-C--CcceEE-EeecCCcceEEEEEEeccCCC
Q psy7036           7 FAPSFTQKPQLRQEDEGNRLIFECQLLCNP---KPDIVWFRGETQLSE-D--TRTVMK-TTPIGTNKYLVALELDDVIET   79 (254)
Q Consensus         7 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~---~~~v~W~~~~~~~~~-~--~~~~~~-~~~~~~~~~~~~l~i~~~~~~   79 (254)
                      ..|.|+..|++..+.+|++++|.|.+.|.|   .+.|.|+|++..... .  .+.... ..........+.|.|.+++..
T Consensus         3 p~~~Fv~~P~~~~v~~G~~v~l~C~v~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~   82 (110)
T d2avga1           3 PIGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPA   82 (110)
T ss_dssp             TTCSEEECCCCEEEETTSEEEEEEEEECCSCSSSCEEEEECSTTCCSTTTCSSSEEEEEEEETTTTEEEEEEEEESCCTT
T ss_pred             CCCEeEECCCeEEEECCCCEEEEEeecCCCCCCCCEEEEEeCceeeecccCCceeEeeeeeEEecccCEEEEEEeccCHH
Confidence            456899999999999999999999999887   578999998754321 1  111111 112233445668999999999


Q ss_pred             CCeEEEEEEEcCCCceEEEEEEEEec
Q psy7036          80 DAGLYKVKAKNKMGEVAASINLNFSR  105 (254)
Q Consensus        80 d~G~Y~C~~~~~~~~~~~~~~l~v~~  105 (254)
                      |+|.|+|.+.|..|.....+.|.|.+
T Consensus        83 D~G~Y~C~a~N~~G~~~~~~~L~V~~  108 (110)
T d2avga1          83 FTGGYRCEVSTKDKFDCSNFNLTVHE  108 (110)
T ss_dssp             CCEEEEEEEEETTEEEEEEEEEEEES
T ss_pred             HCcEEEEEEEECCCeEEEEEEEEEEe
Confidence            99999999999999999999999863

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.75  E-value=3.9e-18  Score=103.68  Aligned_cols=92  Identities=29%  Similarity=0.490  Sum_probs=75.1

Q ss_pred             CccccCCCeeeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEE
Q psy7036         113 PTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAK  192 (254)
Q Consensus       113 ~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~  192 (254)
                      |.+...+....+.+|+.+.|.|.+.|.|.+.+.|++++..+....+..+..  ++.  ...|.|.++..+|+|.|+|.|.
T Consensus         2 P~f~~~p~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~~~~l~~~~~~~~~~--~~~--~~~L~I~~~~~~D~G~Y~C~a~   77 (97)
T d1koaa1           2 PRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRY--NGN--DYGLTINRVKGDDKGEYTVRAK   77 (97)
T ss_dssp             CEEEECCCCCEEETTSCEEEEEEEECSSCCEEEEEETTEECCSBTTBBCCC--STT--EEEEEESCCCSGGGSCEEEEEE
T ss_pred             CEEEEeCCCEEEeCCCcEEEEEEEEEcCCCEEEEEEeeeccceeeEEEEEe--cCC--eeEEEeCCCceecCEEEEEEEE
Confidence            445555667788899999999999999999999999999987665543322  222  2379999999999999999999


Q ss_pred             cCCCcceEEEEEEEec
Q psy7036         193 NELGESNATISLNFDS  208 (254)
Q Consensus       193 ~~~~~~~~~~~~~v~~  208 (254)
                      |..|....++.|.|..
T Consensus        78 N~~G~~~~~~~l~V~~   93 (97)
T d1koaa1          78 NSYGTKEEIVFLNVTR   93 (97)
T ss_dssp             ETTEEEEEEECCEEEC
T ss_pred             ECCCEEEEEEEEEEee
Confidence            9999988888888864

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.75  E-value=1.6e-17  Score=100.85  Aligned_cols=91  Identities=15%  Similarity=0.312  Sum_probs=72.1

Q ss_pred             CCeeEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEE
Q psy7036           8 APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVK   87 (254)
Q Consensus         8 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~   87 (254)
                      .|.|.  +++..+.+|+++.|.|.+.|.|.+.+.|+++|..+.......+........   .+|.|.+++.+|+|.|+|.
T Consensus         5 ~p~~~--~~~~~~~~G~~v~l~C~~~g~P~~~v~W~k~g~~i~~~~~~~~~~~~~~~~---~~L~I~~~~~~D~G~Y~C~   79 (97)
T d1biha3           5 VPQYV--SKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSG---KRLLFKTTLPEDEGVYTCE   79 (97)
T ss_dssp             EEEEE--CCSEEEETTSCEEEEEEEECSSCCCCEEEETTEECCCCTTSSEESCSSSTT---SEEEESSCCGGGCEEEEEE
T ss_pred             CCeeC--CCCEEEecCCeEEEEEEEEEecCCEEEEEEeeeeccccceeeeeeeeecCC---CEEEEEeccccccEEEEEE
Confidence            45554  567889999999999999999999999999999987655544433222222   2799999999999999999


Q ss_pred             EEcCCCceE-EEEEEEE
Q psy7036          88 AKNKMGEVA-ASINLNF  103 (254)
Q Consensus        88 ~~~~~~~~~-~~~~l~v  103 (254)
                      +.|..|... ..+.|.|
T Consensus        80 a~N~~G~~~s~s~~L~V   96 (97)
T d1biha3          80 VDNGVGKPQKHSLKLTV   96 (97)
T ss_dssp             ECCSSSSCEEEEEEEEE
T ss_pred             EEECCCcEEEEEEEEEE
Confidence            999999754 4677776

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.75  E-value=1.2e-17  Score=101.65  Aligned_cols=93  Identities=27%  Similarity=0.404  Sum_probs=76.8

Q ss_pred             CCccccCCCeeeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEE
Q psy7036         112 APTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTA  191 (254)
Q Consensus       112 ~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~  191 (254)
                      +|.+...+....+.+|+.+.|.|.+.|.|.|.+.|++++..+............++.   ..|.|.++..+|.|.|+|.|
T Consensus         4 aP~f~~~~~~~~v~~g~~v~l~c~v~g~P~p~v~W~k~~~~i~~~~~~~~~~~~~~~---~~L~I~~~~~~D~G~Y~c~a   80 (98)
T d1g1ca_           4 APKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNV---CELVIRDVTGEDSASIMVKA   80 (98)
T ss_dssp             EEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEEEETTE---EEEEECSCCGGGCEEEEEEE
T ss_pred             CCeEecCCCcEEEcCCCcEEEEEEEEEecCCeEEEEeCceEEeeeeeeEEEeccceE---EEEEeccCccccCEEEEEEE
Confidence            345555566778889999999999999999999999999999776654444333332   37999999999999999999


Q ss_pred             EcCCCcceEEEEEEEe
Q psy7036         192 KNELGESNATISLNFD  207 (254)
Q Consensus       192 ~~~~~~~~~~~~~~v~  207 (254)
                      .|..|....+..|.|.
T Consensus        81 ~N~~G~~~~~~~L~V~   96 (98)
T d1g1ca_          81 INIAGETSSHAFLLVQ   96 (98)
T ss_dssp             EETTEEEEEEEEEEEE
T ss_pred             EECCcEEEEEEEEEEE
Confidence            9999999888888886

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.74  E-value=2.3e-18  Score=103.36  Aligned_cols=87  Identities=23%  Similarity=0.319  Sum_probs=70.3

Q ss_pred             CCCeeEe-CCCceeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEE
Q psy7036           7 FAPSFTQ-KPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYK   85 (254)
Q Consensus         7 ~~p~~~~-~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~   85 (254)
                      .+|.|.. .|....+.+|++++|.|.+.|.|.+.++|+|++........      ..+     ..|.|.+++..|+|.|+
T Consensus         3 ~~P~i~~~~p~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~~~~~~~~~~------~~~-----~~L~I~~v~~~D~G~Y~   71 (91)
T d1cs6a3           3 YAPSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSKWL------SSE-----PLLHIQNVDFEDEGTYE   71 (91)
T ss_dssp             EEEEEEECCCSEEEEETTCCEEEECEEEEESCCEEEEEECCSCCSCCCS------BSS-----SEEEECSCCGGGCEEEE
T ss_pred             cCCeEEeeCCCcEEEecCCcEEEEEEEEEccCCEEEEEecccccceEee------eee-----eEEEeCCCCccCCEEEE
Confidence            4677765 47888999999999999999999999999997754322111      111     17999999999999999


Q ss_pred             EEEEcCCCceEEEEEEEEe
Q psy7036          86 VKAKNKMGEVAASINLNFS  104 (254)
Q Consensus        86 C~~~~~~~~~~~~~~l~v~  104 (254)
                      |.+.|..|.....+.|.|.
T Consensus        72 C~a~N~~G~~~~~~~l~V~   90 (91)
T d1cs6a3          72 CEAENIKGRDTYQGRIIIH   90 (91)
T ss_dssp             EEEEETTEEEEEEEEEEEE
T ss_pred             EEEEECCCEEEEEEEEEEE
Confidence            9999999998888888774

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.74  E-value=1.3e-17  Score=99.41  Aligned_cols=86  Identities=26%  Similarity=0.488  Sum_probs=72.3

Q ss_pred             ccccCCCeeeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEc
Q psy7036         114 TFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKN  193 (254)
Q Consensus       114 ~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~  193 (254)
                      .+...+.+..+..|+.+.|.|.+.|.|.|.+.|++++..+.......+  .. +     .|.|.++..+|.|.|+|.|.|
T Consensus         3 ~f~~~~~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~g~~i~~~~~~~~--~~-~-----~L~i~~v~~~D~G~Y~C~a~N   74 (89)
T d1cs6a4           3 DWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEV--SG-G-----ELRFSKLVLEDSGMYQCVAEN   74 (89)
T ss_dssp             EEEECCCCEEEETTCCEEEECEEEEESCCEEEEEETTEECCCCSSEEE--ET-T-----EEEESSCCGGGCEEEEEEEEE
T ss_pred             CeEEECCCEEECCCCcEEEEEEEEEEcCCEEEEEEeeccccccceeee--ee-e-----eEEEEeecccCCEEEEEEEEe
Confidence            344556677888999999999999999999999999999876654332  22 2     799999999999999999999


Q ss_pred             CCCcceEEEEEEEe
Q psy7036         194 ELGESNATISLNFD  207 (254)
Q Consensus       194 ~~~~~~~~~~~~v~  207 (254)
                      ..|....+..|.|+
T Consensus        75 ~~G~~~~~~~l~V~   88 (89)
T d1cs6a4          75 KHGTVYASAELTVQ   88 (89)
T ss_dssp             TTEEEEEEEEEEEE
T ss_pred             CCCEEEEEEEEEEE
Confidence            99998888888875

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=4.2e-17  Score=99.94  Aligned_cols=97  Identities=26%  Similarity=0.404  Sum_probs=79.6

Q ss_pred             CCCCeeEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEE
Q psy7036           6 DFAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYK   85 (254)
Q Consensus         6 ~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~   85 (254)
                      .++|.|+....   ...++.+.|.|.+.|.|.|.+.|+++|..+..+.+..............+.|.|.+++..|+|.|+
T Consensus         2 ~~pP~it~~~~---~~~~~~~~i~~~v~G~P~P~i~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~   78 (103)
T d1wwbx_           2 HFAPTITFLES---PTSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYT   78 (103)
T ss_dssp             CCCCCCCCCCC---CCCCCEEEEEEEEECSSCCEEEEEETTEEECCCSSEEEEEEEECSSEEEEEEEEESCCGGGCEEEE
T ss_pred             ccCCeeEEcCC---CccceeEEEEEEEEEeCCCEEEEEECCEEeeeeeeeeeeecccccccceEEEEECCCCHHhCceEE
Confidence            46788764332   236788899999999999999999999999877766665555555555668999999999999999


Q ss_pred             EEEEcCCCceEEEEEEEEec
Q psy7036          86 VKAKNKMGEVAASINLNFSR  105 (254)
Q Consensus        86 C~~~~~~~~~~~~~~l~v~~  105 (254)
                      |.|.|..|.....+.|.|.+
T Consensus        79 C~a~N~~G~~~~~~~v~V~~   98 (103)
T d1wwbx_          79 LIAKNEYGKDEKQISAHFMG   98 (103)
T ss_dssp             EEEECSSCEEEEEEEECCSC
T ss_pred             EEEeccCCEEEEEEEEEEEe
Confidence            99999999999988888863

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.74  E-value=1.2e-17  Score=100.62  Aligned_cols=92  Identities=22%  Similarity=0.308  Sum_probs=76.9

Q ss_pred             CCccccCCCeeeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEE
Q psy7036         112 APTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTA  191 (254)
Q Consensus       112 ~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~  191 (254)
                      +|.+........+..|+.+.|.|.+.|.|.|.+.|++++..+............+.    +.|.|.++..+|+|.|+|.|
T Consensus         2 ~P~i~~~~~~~~v~~G~~~~l~c~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~----~~L~I~~~~~~D~G~Y~c~a   77 (93)
T d1wiua_           2 KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSST----TSIFFPSAKRADSGNYKLKV   77 (93)
T ss_dssp             CCEECCCCCEEEECSSBCCEEEEEEECCSSCEEEEECSSSSCBCSTTSEEEEETTE----EEEECTTBCGGGCEEEEEEE
T ss_pred             CCeEEeCCCcEEEeCCCeEEEEEEEEEecCCeEEEEeeeeeceeeeeeeecccccc----eeeccccccccccEEEEEEE
Confidence            45566666778899999999999999999999999999998877666555443332    37999999999999999999


Q ss_pred             EcCCCcceEEEEEEEe
Q psy7036         192 KNELGESNATISLNFD  207 (254)
Q Consensus       192 ~~~~~~~~~~~~~~v~  207 (254)
                      .|..|.....+.|.|+
T Consensus        78 ~N~~G~~~~~~~l~V~   93 (93)
T d1wiua_          78 KNELGEDEAIFEVIVQ   93 (93)
T ss_dssp             EETTEEEEEEEEEEEC
T ss_pred             EECCCEEEEEEEEEEC
Confidence            9999999888888763

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=7.4e-18  Score=103.84  Aligned_cols=97  Identities=14%  Similarity=0.256  Sum_probs=72.9

Q ss_pred             CCeeEeCCCceeecCCCeEEEEEEEeeCC-CCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEE
Q psy7036           8 APSFTQKPQLRQEDEGNRLIFECQLLCNP-KPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKV   86 (254)
Q Consensus         8 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C   86 (254)
                      .|.|...+....+.+|+++.|.|.+.|.| .|.++|+|++..+.....................|.|.+++..|+|.|+|
T Consensus         3 ~~~fi~~~~~~~v~~G~~v~L~C~v~g~p~~P~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C   82 (104)
T d2aw2a1           3 VQLYIKRQSEHSILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNISFFILHFEPVLPNDNGSYRC   82 (104)
T ss_dssp             CEECCCTTEEEEEETTSCEEEEEEEECSSSCCEEEEEEECSSCEEECCSSCEEEEECSSCEEEEEEESSCCGGGCEEEEE
T ss_pred             ccEEEecCCeEEEeCCCeEEEEEEEEeeCCCCEEEEEecCcccccccceeeeeEEecCCceEEEEEEccccHHHCCeEEE
Confidence            45677888888999999999999999988 58999999887553322222212222233344579999999999999999


Q ss_pred             EEEcCCCceE-EEEEEEEe
Q psy7036          87 KAKNKMGEVA-ASINLNFS  104 (254)
Q Consensus        87 ~~~~~~~~~~-~~~~l~v~  104 (254)
                      .|.|..|... ..+.|.|.
T Consensus        83 ~A~N~~G~~~s~~~~l~V~  101 (104)
T d2aw2a1          83 SANFQSNLIESHSTTLYVT  101 (104)
T ss_dssp             EEEETTEEEECCCEEEEEE
T ss_pred             EEEcCCCeEEEEEEEEEEE
Confidence            9999998754 46777775

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=1.1e-17  Score=100.41  Aligned_cols=88  Identities=17%  Similarity=0.315  Sum_probs=70.8

Q ss_pred             CCCceeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcCCC
Q psy7036          14 KPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMG   93 (254)
Q Consensus        14 ~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~   93 (254)
                      .|.++.+.+|+++.|.|.+.+.|.+.+.|+|++..+....+..+...   .....+.|.|.+++..|+|.|+|.+.|..|
T Consensus         2 ~P~~~~v~~G~~~~l~C~v~g~p~p~v~W~k~g~~l~~~~~~~~~~~---~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G   78 (91)
T d1rhfa1           2 APVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVS---EQHWIGFLSLKSVERSDAGRYWCQVEDGGE   78 (91)
T ss_dssp             CCEEEEEETTCCEEEEEEEESCSSCCEEEEETTEECCSSEEEEEEEE---TTEEEEEEEESSCCGGGCEEEEEEESSCTT
T ss_pred             cCeeEEEcCCCeEEEEEEEEecCCceEEEEEeecccccceeeeeeec---ccCceeeEEECCCCcccCEEEEEEEEECCC
Confidence            36678899999999999999999999999999999876655444332   223445799999999999999999999998


Q ss_pred             ce-EEEEEEEEe
Q psy7036          94 EV-AASINLNFS  104 (254)
Q Consensus        94 ~~-~~~~~l~v~  104 (254)
                      .. +..+.|.|.
T Consensus        79 ~~~S~~~~l~V~   90 (91)
T d1rhfa1          79 TEISQPVWLTVE   90 (91)
T ss_dssp             CEECCCEEEEEE
T ss_pred             CEEEEEEEEEEE
Confidence            74 446777663

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

Probab=99.72  E-value=2.5e-17  Score=102.60  Aligned_cols=97  Identities=24%  Similarity=0.333  Sum_probs=71.5

Q ss_pred             CCCeeEeC-CCceeecCCCeEEEEEEEeeCCCCceEEEeCCEEeee----CCcceEE----EeecCCcceEEEEEEeccC
Q psy7036           7 FAPSFTQK-PQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSE----DTRTVMK----TTPIGTNKYLVALELDDVI   77 (254)
Q Consensus         7 ~~p~~~~~-~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~----~~~~~~~----~~~~~~~~~~~~l~i~~~~   77 (254)
                      .+|.|... |+...+.+|++++|.|.+.|.|.+.|.|+|++.....    .......    ..........+.|.|.+++
T Consensus         3 ~~P~i~~~~P~~~tv~~G~~v~l~C~v~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~   82 (109)
T d2fdbp2           3 HRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVT   82 (109)
T ss_dssp             SCCEECTTCSCCEEECTTCCEEEEEEEECSSCCEEEEEEEC-------------CEEEECCEEEEETTEEEEEEEECSCC
T ss_pred             CCCEEcCCCCCCEEEecCCcEEEEEEEEEcCCCeEEEEecCccCCceeccCCceeEeecccceeEEecCCcEEEEECCCC
Confidence            46888765 7889999999999999999999999999997653211    1111111    0111123345689999999


Q ss_pred             CCCCeEEEEEEEcCCCceEEEEEEEE
Q psy7036          78 ETDAGLYKVKAKNKMGEVAASINLNF  103 (254)
Q Consensus        78 ~~d~G~Y~C~~~~~~~~~~~~~~l~v  103 (254)
                      ..|+|.|+|.|.|..|....++.|.|
T Consensus        83 ~~D~G~Y~C~a~N~~G~~~~~~~L~V  108 (109)
T d2fdbp2          83 FEDAGEYTCLAGNSIGISFHSAWLTV  108 (109)
T ss_dssp             GGGCEEEEEEEECSSCEEEEEEEEEE
T ss_pred             HHHCeEEEEEEEECCCEEEEEEEEEE
Confidence            99999999999999999988888887

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=1.1e-16  Score=98.05  Aligned_cols=94  Identities=18%  Similarity=0.316  Sum_probs=72.2

Q ss_pred             CCCeeEeCCCceeecCCCeEEEEEEEeeCCCC-ceEEEeCCEE----eeeCCcceEEEeecCCcceEEEEEEeccC-CCC
Q psy7036           7 FAPSFTQKPQLRQEDEGNRLIFECQLLCNPKP-DIVWFRGETQ----LSEDTRTVMKTTPIGTNKYLVALELDDVI-ETD   80 (254)
Q Consensus         7 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~-~v~W~~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d   80 (254)
                      .||.|...+....+.+|+.+.|.|.+.|.|.+ .++|++++..    +......++......   ..+.|.|.++. ..|
T Consensus         1 GPP~i~~~~~~~~v~~G~~v~l~C~v~g~P~p~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~---~~~~L~I~~v~~~~D   77 (101)
T d3b5ha1           1 GPPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQ---GRSELHIENLNMEAD   77 (101)
T ss_dssp             CSCCCEESCSEEEECTTSCEEEEEECCCSSCCCEEEEEECCSSSCEECCTTGGGTEEEEEET---TEEEEEECSCCTTTS
T ss_pred             CCceEEEcCCcEEECcCCeEEEEEEEEecCCeeEEEEEeccceeeeecccCCCceEEEEeCC---CEEEEEEeccccccC
Confidence            47999999999999999999999999998877 7999997532    222222222222222   23489999998 579


Q ss_pred             CeEEEEEEEcCCCceEEEEEEEE
Q psy7036          81 AGLYKVKAKNKMGEVAASINLNF  103 (254)
Q Consensus        81 ~G~Y~C~~~~~~~~~~~~~~l~v  103 (254)
                      +|.|+|.|.|..|.....+.|.|
T Consensus        78 ~G~Y~C~A~N~~G~~~~~~~L~V  100 (101)
T d3b5ha1          78 PGQYRCNGTSSKGSDQAIITLRV  100 (101)
T ss_dssp             SEEEEEEEEETTEEEEEEEEEEE
T ss_pred             CEEEEEEEEECCCEEEEEEEEEE
Confidence            99999999999999888888876

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.71  E-value=9e-18  Score=102.06  Aligned_cols=90  Identities=23%  Similarity=0.378  Sum_probs=72.2

Q ss_pred             CCCCeeEeCCCceeecCC---CeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCe
Q psy7036           6 DFAPSFTQKPQLRQEDEG---NRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAG   82 (254)
Q Consensus         6 ~~~p~~~~~~~~~~v~~g---~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G   82 (254)
                      .+.|.|+..|.+..+.+|   ++++|.|.+.|.|.+.++|++||..+.............      ..|.|..+...|+|
T Consensus         2 ~~~P~f~~~P~~~~~~~g~~~~~v~l~C~~~g~P~p~v~W~~ng~~i~~~~~~~~~~~~~------~~l~i~~~~~~d~G   75 (97)
T d1cs6a1           2 SYGPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAG------DLVISNPVKAKDAG   75 (97)
T ss_dssp             CEEEEEEECCCCEEEETTCSCCEEEECCEEEEESCCEEEEEETTEECCCSTTSSEEEETT------EEEEESCCHHHHCE
T ss_pred             CcCCEEEEeCCCEEEECccCCCeEEEEEEEEEeCCCEEEEEEeeeeccCCCCceEEeeee------eEEEEecccccCCE
Confidence            357999999999887665   789999999999999999999999987665554443321      16888889999999


Q ss_pred             EEEEEEEcCCCceE-EEEEE
Q psy7036          83 LYKVKAKNKMGEVA-ASINL  101 (254)
Q Consensus        83 ~Y~C~~~~~~~~~~-~~~~l  101 (254)
                      .|+|.|.|..|... ..+.|
T Consensus        76 ~Y~C~a~N~~G~~~S~~a~L   95 (97)
T d1cs6a1          76 SYQCVATNARGTVVSREASL   95 (97)
T ss_dssp             EEEEEEEETTEEEECCCEEE
T ss_pred             EEEEEEEECCCEEEEEEEEE
Confidence            99999999999753 24544

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=7.9e-17  Score=100.78  Aligned_cols=95  Identities=21%  Similarity=0.314  Sum_probs=73.8

Q ss_pred             eEeCCCceeecCCCeEEEEEEEeeCC---CCceEEEeCCEEee---eCCcceEEE-eecCCcceEEEEEEeccCCCCCeE
Q psy7036          11 FTQKPQLRQEDEGNRLIFECQLLCNP---KPDIVWFRGETQLS---EDTRTVMKT-TPIGTNKYLVALELDDVIETDAGL   83 (254)
Q Consensus        11 ~~~~~~~~~v~~g~~v~l~C~~~~~~---~~~v~W~~~~~~~~---~~~~~~~~~-~~~~~~~~~~~l~i~~~~~~d~G~   83 (254)
                      |...|+...+.+|++++|.|.+.|.|   .|.|.|+|++....   ...+..... .........+.|.|.+++..|+|.
T Consensus         3 F~~~P~~~~v~~G~~v~l~C~v~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~   82 (113)
T d2dava1           3 FIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNFAGN   82 (113)
T ss_dssp             CCSCCCCCEEETTCCEEEEEEEECCCSSSCCEEEEEESSSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCTTSCEE
T ss_pred             EeECCceEEEeCCCEEEEEEEEccCCCCCCCEEEEEEeeccccccccceeeeeccceeeEeecCEEEEEEccCCHHHCeE
Confidence            67788999999999999999999887   57999999875431   112222221 122334456689999999999999


Q ss_pred             EEEEEEcCCCceEEEEEEEEec
Q psy7036          84 YKVKAKNKMGEVAASINLNFSR  105 (254)
Q Consensus        84 Y~C~~~~~~~~~~~~~~l~v~~  105 (254)
                      |+|.|.|..|.....+.|.|.+
T Consensus        83 Y~C~a~N~~G~~~~~~~L~V~~  104 (113)
T d2dava1          83 YRCEVTYKDKFDSCSFDLEVHE  104 (113)
T ss_dssp             EEEEEECSSCEEEECCEEEEEC
T ss_pred             EEEEEEeCCCEEEEEEEEEEEc
Confidence            9999999999999999999864

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.70  E-value=1.7e-17  Score=99.47  Aligned_cols=88  Identities=30%  Similarity=0.555  Sum_probs=73.4

Q ss_pred             ccCCCeeeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCC
Q psy7036         116 LKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNEL  195 (254)
Q Consensus       116 ~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~  195 (254)
                      ...+..+.+.+|+.+.|.|.+.|.|.|.+.|++++..+.......+......    +.|.|.++..+|+|.|+|.|.|..
T Consensus         3 i~~P~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~----~~L~i~~v~~~D~G~Y~C~a~N~~   78 (91)
T d1tnna_           3 LTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYK----STFEISSVQASDEGNYSVVVENSE   78 (91)
T ss_dssp             SBCCCCEECSSSSCCCEEEECCCSSCCCCEEESSSSTTCSSSSCEEEECSSE----EEEECSSCCSCCCEEEEEECBCSS
T ss_pred             EeCCcCEEEeCCCcEEEEEEEEEEeCCeEEEEEeecccccccceeeeeecce----eEEeecCCCHHHCEEEEEEEEECC
Confidence            3445667889999999999999999999999999998876665554443332    479999999999999999999999


Q ss_pred             CcceEEEEEEEe
Q psy7036         196 GESNATISLNFD  207 (254)
Q Consensus       196 ~~~~~~~~~~v~  207 (254)
                      |....++.|.|+
T Consensus        79 G~~~~~~~l~V~   90 (91)
T d1tnna_          79 GKQEAEFTLTIQ   90 (91)
T ss_dssp             CBCCEEEEEECC
T ss_pred             CEEEEEEEEEEE
Confidence            998888888774

>d2nxyb2 b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD4 C2-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=5.1e-17  Score=95.72  Aligned_cols=77  Identities=12%  Similarity=0.148  Sum_probs=64.7

Q ss_pred             EeCCCceeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcC
Q psy7036          12 TQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNK   91 (254)
Q Consensus        12 ~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~   91 (254)
                      +..|. ..+.+|++++|.|.+.|.|.|.++|++++..+.....               .|.|.+++..|+|.|+|.|.|.
T Consensus         4 t~~~~-~~v~~G~~~~L~C~~~g~p~P~i~W~~~~~~~~~~~~---------------~l~i~~v~~~DsG~Y~C~a~N~   67 (84)
T d2nxyb2           4 TANSD-THLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQGGK---------------TLSVSQLELQDSGTWTCTVLQN   67 (84)
T ss_dssp             EESCS-SCEETTCCEEEEEECCTTCCCEEEEECTTCCEEEESS---------------EEEESSCCGGGCEEEEEEEEET
T ss_pred             cCCCC-eEEECCCeEEEEEEeEcCCchheEEEeecccceeeee---------------eeeeeecccccccEEEEEEEeC
Confidence            34443 4688999999999999999999999998765443221               6999999999999999999999


Q ss_pred             CCceEEEEEEEEe
Q psy7036          92 MGEVAASINLNFS  104 (254)
Q Consensus        92 ~~~~~~~~~l~v~  104 (254)
                      .|.....+.|.|.
T Consensus        68 ~g~~~~~~~v~V~   80 (84)
T d2nxyb2          68 QKKVEFKIDIVVL   80 (84)
T ss_dssp             TEEEEEEEEECEE
T ss_pred             CCEEEEEEEEEEE
Confidence            9998888888886

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=3.6e-18  Score=102.75  Aligned_cols=89  Identities=18%  Similarity=0.243  Sum_probs=73.1

Q ss_pred             CCeeEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCe-EEEE
Q psy7036           8 APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAG-LYKV   86 (254)
Q Consensus         8 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G-~Y~C   86 (254)
                      .|.|...+....+.+|+++.|.|.+.|.|.+.++|++++..+......       ........|.|.+++..|.| .|+|
T Consensus         2 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~~-------~~~~~~~~L~i~~~~~~d~G~~Y~C   74 (92)
T d2ifga1           2 VPTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMK-------SGGLPSLGLTLANVTSDLNRKNVTC   74 (92)
T ss_dssp             CCEEEEECCSSCCBTTCCEEEEEEEECSSCCCCCEEESCCCSSEEECC-------CCCSSEEEEEEESCCSTTTTCCEEE
T ss_pred             CCEEEEeCCCEEEeCCCEEEEeeeccCCCCcEEEEEECCceeeeeeee-------eeeccceeEEEccccccccceEEEE
Confidence            689999999999999999999999999999999999998765432211       11223347999999999999 7999


Q ss_pred             EEEcCCCceEEEEEEEE
Q psy7036          87 KAKNKMGEVAASINLNF  103 (254)
Q Consensus        87 ~~~~~~~~~~~~~~l~v  103 (254)
                      .|.|..|....++.|.|
T Consensus        75 ~a~N~~G~~~~s~~l~V   91 (92)
T d2ifga1          75 WAENDVGRAEVSVQVNV   91 (92)
T ss_dssp             CCEETTEECCEEECCCC
T ss_pred             EEEcCCCEEEEEEEEEE
Confidence            99999998877776655

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.69  E-value=1.7e-17  Score=100.28  Aligned_cols=83  Identities=17%  Similarity=0.213  Sum_probs=68.3

Q ss_pred             CCeeEeCCCceeecCCCeEEEEEEEeeCCCC-ceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEE
Q psy7036           8 APSFTQKPQLRQEDEGNRLIFECQLLCNPKP-DIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKV   86 (254)
Q Consensus         8 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C   86 (254)
                      .|.|...|.+..+.+|+++.|.|.+.|.|.+ .+.|++||..+......... ....     ++|.|.++..+|+|.|+|
T Consensus         2 ~P~i~~~p~~~~v~~g~~~~l~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~-~~~~-----~~L~i~~v~~~D~G~Y~C   75 (94)
T d1biha1           2 YPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAAL-RKDE-----GSLVFLRPQASDEGHYQC   75 (94)
T ss_dssp             CCEECCCCSEEEEETTSCEEECCCEESCCSSCEEEEEESSSBCCTTTTTEEE-CTTS-----CCEEESSCCGGGCEEEEE
T ss_pred             CCEEEecCCcEEEeCCCeEEEEEEecCCCCeeEEEEEeeeeeeeeecceeee-cccc-----eEEEEeccChhcCeEEEE
Confidence            6899999999999999999999999998865 69999999988655443322 2111     169999999999999999


Q ss_pred             EEEcCCCceE
Q psy7036          87 KAKNKMGEVA   96 (254)
Q Consensus        87 ~~~~~~~~~~   96 (254)
                      .|.|..|...
T Consensus        76 ~a~N~~G~~~   85 (94)
T d1biha1          76 FAETPAGVAS   85 (94)
T ss_dssp             EEEETTEEEE
T ss_pred             EEEeCCCEEE
Confidence            9999998643

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=3.4e-16  Score=96.38  Aligned_cols=97  Identities=19%  Similarity=0.247  Sum_probs=76.0

Q ss_pred             CCCCCeeEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEE
Q psy7036           5 EDFAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLY   84 (254)
Q Consensus         5 ~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y   84 (254)
                      +.++|.|....+.   ..+....|.|.+.|.|.+.++|+++|..+....+....... ......+.|.|.+++..|+|.|
T Consensus         2 V~~PP~i~~~~~~---~~~~~~~i~~~v~G~P~P~v~W~~n~~~i~~~~~~~~~~~~-~~~~~~~~L~i~~~~~~D~G~Y   77 (105)
T d1wwca_           2 VYYPPRVVSLEEP---ELRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQ-EGEISEGCLLFNKPTHYNNGNY   77 (105)
T ss_dssp             CCCCCCCCCCCCC---CCCCEEEEEEEEECSSCCEEEEEETTEECCCSSSEEEEEEE-CSSEEEEEEEEESCCGGGCEEE
T ss_pred             EEcCCeeEEeCCC---EEEEEEEEEEEEEEeCCCeEEEEeCccccCCCcceeeeEEe-ecccceEEEEEeecccccceEE
Confidence            5678887654332   34556778899999999999999999999877665544332 3344566899999999999999


Q ss_pred             EEEEEcCCCceEEEEEEEEec
Q psy7036          85 KVKAKNKMGEVAASINLNFSR  105 (254)
Q Consensus        85 ~C~~~~~~~~~~~~~~l~v~~  105 (254)
                      +|.|.|..|.....+.|.|.+
T Consensus        78 ~C~a~N~~G~~~~~~~v~V~~   98 (105)
T d1wwca_          78 TLIAKNPLGTANQTINGHFLK   98 (105)
T ss_dssp             EEEEEETTEEEEEEEEECCSC
T ss_pred             EEEEEcCCCEEEEEEEEEEEe
Confidence            999999999998888888864

>d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.69  E-value=3.5e-16  Score=94.89  Aligned_cols=91  Identities=24%  Similarity=0.360  Sum_probs=67.6

Q ss_pred             eeEeCCCceeecCCCeEEEEEEEeeCCC-CceEEEeC-CEEeee-CCcceEEEeecCCcceEEEEEEeccCCCCCeEEEE
Q psy7036          10 SFTQKPQLRQEDEGNRLIFECQLLCNPK-PDIVWFRG-ETQLSE-DTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKV   86 (254)
Q Consensus        10 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~-~~v~W~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C   86 (254)
                      ++.+.|....+.+|+++.|.|.+.|.|. +.+.|+++ +..+.. ..++......    ...+.|.|.+++.+|+|.|+|
T Consensus         2 ~V~i~P~~~~v~~G~~~~l~C~v~g~p~~~~v~W~~~~g~~~~~~~~~~~~~~~~----~~~~~L~I~~~~~~D~G~Y~C   77 (97)
T d1epfa1           2 QVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWND----DDSSTLTIYNANIDDAGIYKC   77 (97)
T ss_dssp             CEEEESSSEEEETTCCEEEEEEECCCSCCCEEEEECTTSCEECCBSSSEEEEEEE----TTEEEEEECSCCGGGCEEEEE
T ss_pred             EEEEECCCEEEccCCcEEEEEEEEeccCCCEEEEEEeeeeeeeeccccEEEEeec----CcceEEEcccCchhhceEEEE
Confidence            3556778889999999999999998874 79999994 454443 3333332221    123479999999999999999


Q ss_pred             EEEcCCCce-EEEEEEEEe
Q psy7036          87 KAKNKMGEV-AASINLNFS  104 (254)
Q Consensus        87 ~~~~~~~~~-~~~~~l~v~  104 (254)
                      .+.|..|.. ...+.|+|.
T Consensus        78 ~a~N~~G~~~~~tv~l~V~   96 (97)
T d1epfa1          78 VVTAEDGTQSEATVNVKIF   96 (97)
T ss_dssp             EEEETTTEEEEEEEEEEEE
T ss_pred             EEEeCCCcEEEEEEEEEEE
Confidence            999999864 456777664

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.69  E-value=4.7e-17  Score=97.28  Aligned_cols=83  Identities=19%  Similarity=0.281  Sum_probs=67.6

Q ss_pred             eEeCCCceeecCCCeEEEEEEEe-eCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEE
Q psy7036          11 FTQKPQLRQEDEGNRLIFECQLL-CNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAK   89 (254)
Q Consensus        11 ~~~~~~~~~v~~g~~v~l~C~~~-~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~   89 (254)
                      +...|....+.+|+++.|.|.+. +.|.+.++|+|++..+......    ...+      .|.|.+++.+|+|.|+|.+.
T Consensus         5 ~~~~p~~~~v~~G~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~----~~~~------~L~i~~v~~~d~G~Y~C~a~   74 (89)
T d1gl4b_           5 TVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAM----DFNG------ILTIRNVQPSDAGTYVCTGS   74 (89)
T ss_dssp             EECSCCEEEECTTCCEEEEEEEEESSSCCEEEEEEGGGBCCCTTEE----EETT------EEEECSCCGGGCEEEEEEEE
T ss_pred             EEcCCCeEEEeCCCcEEEEEEccCCCCCCEEEEecCCceeeccccE----eece------EEEEecCCcccCEEEEEEEE
Confidence            34467778899999999999997 5788899999998776544321    1111      79999999999999999999


Q ss_pred             cCCCceEEEEEEEE
Q psy7036          90 NKMGEVAASINLNF  103 (254)
Q Consensus        90 ~~~~~~~~~~~l~v  103 (254)
                      |..|.....+.|.|
T Consensus        75 N~~G~~~~~~~l~V   88 (89)
T d1gl4b_          75 NMFAMDQGTATLHV   88 (89)
T ss_dssp             CSSCEEEEEEEEEE
T ss_pred             ECCCEEEEEEEEEE
Confidence            99999888888876

>d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Mucosal addressin cell adhesion molecule-1 (MADCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=6.9e-17  Score=96.14  Aligned_cols=86  Identities=14%  Similarity=0.183  Sum_probs=66.3

Q ss_pred             CCeeEeCC-CceeecCCCeEEEEEEEe-eCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEE
Q psy7036           8 APSFTQKP-QLRQEDEGNRLIFECQLL-CNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYK   85 (254)
Q Consensus         8 ~p~~~~~~-~~~~v~~g~~v~l~C~~~-~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~   85 (254)
                      .|.+...| ....+.+|+++.|.|.+. +.|.+.++|++.+..+..     ....     ...+.|.|.+++.+|+|.|+
T Consensus         2 kP~~i~~p~~~~~~~~G~~~~l~C~~~~g~p~p~v~W~~~~~~~~~-----~~~~-----~~~~~L~i~~v~~~D~G~Y~   71 (90)
T d1gsma1           2 KPLQVEPPEPVVAVALGASRQLTCRLACADRGASVQWRGLDTSLGA-----VQSD-----TGRSVLTVRNASLSAAGTRV   71 (90)
T ss_dssp             CSEEEESCCSEEEEETTCCEEEEEEECCSSTTCEEEEESSTTTTCC-----EEEE-----SSEEEEEECSCCGGGCEEEE
T ss_pred             cCcEEeCCCCeEEEEeCCcEEEEEEecCCCCccEEEEEEeeeeeee-----eecc-----CceeeEEcCccChhhCCcEE
Confidence            35555555 446788999999999985 688999999987765421     1111     12237999999999999999


Q ss_pred             EEEEcCCCceEEEEEEEE
Q psy7036          86 VKAKNKMGEVAASINLNF  103 (254)
Q Consensus        86 C~~~~~~~~~~~~~~l~v  103 (254)
                      |.+.|..+..+.+++|.|
T Consensus        72 C~Asn~~g~~~~s~~l~V   89 (90)
T d1gsma1          72 CVGSCGGRTFQHTVQLLV   89 (90)
T ss_dssp             EEEEETTEEEEEEEEEEE
T ss_pred             EEEEeCCCcEEEEEEEEE
Confidence            999999998888888876

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.68  E-value=2.5e-16  Score=93.73  Aligned_cols=78  Identities=24%  Similarity=0.464  Sum_probs=65.3

Q ss_pred             CeeeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcce
Q psy7036         120 SIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESN  199 (254)
Q Consensus       120 ~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~  199 (254)
                      ....+.+|+.+.|.|.+.|.|.|.+.|++++..+....   +....+      .|.|.++..+|+|.|+|.|.|..|...
T Consensus        11 ~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~~~~i~~~~---~~~~~~------~L~i~~v~~~d~G~Y~C~a~N~~G~~~   81 (89)
T d1biha4          11 KVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGGR---ATVTDS------GLVIKGVKNGDKGYYGCRATNEHGDKY   81 (89)
T ss_dssp             SEEEECTTSCEEEECEEEEESCCCCEEEETTEECCSSS---EEEETT------EEEESSCCSTTCEEEEEEEEETTEEEE
T ss_pred             CCEEEeCCCeEEEEEEEEEeCCCEEEEEeCCccCcccc---EEEeee------eEEECCCChhhCEEEEEEEEECCCEEE
Confidence            34567889999999999999999999999999985432   223222      699999999999999999999999888


Q ss_pred             EEEEEEE
Q psy7036         200 ATISLNF  206 (254)
Q Consensus       200 ~~~~~~v  206 (254)
                      ..+.|.|
T Consensus        82 ~~~~l~V   88 (89)
T d1biha4          82 FETLVQV   88 (89)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEE
Confidence            8877766

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.67  E-value=3.4e-16  Score=93.83  Aligned_cols=87  Identities=21%  Similarity=0.409  Sum_probs=71.5

Q ss_pred             cccCCCeeeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcC
Q psy7036         115 FLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNE  194 (254)
Q Consensus       115 ~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~  194 (254)
                      +...+....+.+|+.+.|.|.+.|.|.|.+.|++++..+.......+....++     .|.|.+++.+|+|.|+|.|.|.
T Consensus         4 F~~~P~~~~v~~G~~~~l~C~v~g~p~p~v~W~~~~~~i~~~~~~~~~~~~~~-----~L~I~~~~~~D~G~Y~C~a~n~   78 (92)
T d1epfa2           4 FKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNN-----YLQIRGIKKTDEGTYRCEGRIL   78 (92)
T ss_dssp             EEECCSSEECCTTSCEEECCEEECSSCCEEEEEETTEEGGGGCCTTEEECTTS-----CEEETTCCGGGCEEEEEEEEEG
T ss_pred             EEEcCCCEEEeCCCcEEEEEEEeecCCCeEEEEEcCcccccccceeeeeeeee-----eEEECCCCHHhCEEEEEEEEEC
Confidence            34455677889999999999999999999999999999887766556555554     6999999999999999999998


Q ss_pred             CCcceEEEEEEE
Q psy7036         195 LGESNATISLNF  206 (254)
Q Consensus       195 ~~~~~~~~~~~v  206 (254)
                      .+.......+.|
T Consensus        79 ~~~~~~~~~i~V   90 (92)
T d1epfa2          79 ARGEINFKDIQV   90 (92)
T ss_dssp             GGTEEEEEEEEE
T ss_pred             cCCEEEEEEEEE
Confidence            776655555554

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=3.2e-16  Score=93.54  Aligned_cols=86  Identities=17%  Similarity=0.334  Sum_probs=68.1

Q ss_pred             eEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEc
Q psy7036          11 FTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKN   90 (254)
Q Consensus        11 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~   90 (254)
                      |+..+++..+.+|+++.|.|.+. .|.+.+.||+++..+..+.+..+.....+.   .+.|.|.+++.+|+|.|+|.+.|
T Consensus         3 i~~~l~~~~v~~G~~v~l~C~v~-~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~---~~~L~I~~v~~~D~G~Y~C~a~n   78 (90)
T d1x44a1           3 VTKQLEDTTAYCGERVELECEVS-EDDANVKWFKNGEEIIPGPKSRYRIRVEGK---KHILIIEGATKADAAEYSVMTTG   78 (90)
T ss_dssp             CSBCCCCEEEETTEEEEEEEECS-SSSCCCEEEETTEECCCSTTCSEEEEEETT---EEEEEEEEECTTTCSEEEEEETT
T ss_pred             EEcCCCCEEEeCCCcEEEEEEEC-CCCceEEEEEeecccCCCCCccEEEEEeCC---ccEEEECccccccCEEEEEEEec
Confidence            45677889999999999999995 688899999999998776665554443332   34799999999999999999866


Q ss_pred             CCCceEEEEEEEEe
Q psy7036          91 KMGEVAASINLNFS  104 (254)
Q Consensus        91 ~~~~~~~~~~l~v~  104 (254)
                          ...++.|.|.
T Consensus        79 ----~~~~a~l~V~   88 (90)
T d1x44a1          79 ----GQSSAKLSVD   88 (90)
T ss_dssp             ----EEEEEEEEEE
T ss_pred             ----ceEEEEEEEE
Confidence                3455667664

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=1.5e-15  Score=93.43  Aligned_cols=83  Identities=28%  Similarity=0.382  Sum_probs=69.0

Q ss_pred             CCCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcceEEEEEE
Q psy7036         126 DGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLN  205 (254)
Q Consensus       126 ~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~  205 (254)
                      .+....+.|.+.|.|.|.+.|++++..+............+.....+.|.|.+++.+|.|.|+|.|.|..|....++.|.
T Consensus        16 ~~~~~~i~~~v~G~P~P~v~W~~n~~~i~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~v~   95 (105)
T d1wwca_          16 LRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGH   95 (105)
T ss_dssp             CCCEEEEEEEEECSSCCEEEEEETTEECCCSSSEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEEETTEEEEEEEEEC
T ss_pred             EEEEEEEEEEEEEeCCCeEEEEeCccccCCCcceeeeEEeecccceEEEEEeecccccceEEEEEEEcCCCEEEEEEEEE
Confidence            34556788899999999999999999987766655555555555667899999999999999999999999998888887


Q ss_pred             Eec
Q psy7036         206 FDS  208 (254)
Q Consensus       206 v~~  208 (254)
                      |..
T Consensus        96 V~~   98 (105)
T d1wwca_          96 FLK   98 (105)
T ss_dssp             CSC
T ss_pred             EEe
Confidence            764

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=7.1e-17  Score=103.87  Aligned_cols=93  Identities=23%  Similarity=0.408  Sum_probs=72.3

Q ss_pred             CCCeeE-----eCCCceeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCC----------------------------
Q psy7036           7 FAPSFT-----QKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDT----------------------------   53 (254)
Q Consensus         7 ~~p~~~-----~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~----------------------------   53 (254)
                      .||++.     ..|..+.+.+|++++|.|.+.|.|.+.+.|++++..+....                            
T Consensus         3 ~PP~i~~~~~~~~~~~v~v~~G~~v~L~C~v~G~P~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (130)
T d1gxea_           3 EPPKIHLDCPGRIPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLCETE   82 (130)
T ss_dssp             BCCCSCCSSSCCCCCEEEESSSSCCCCEEECCSBSCCEEEEEEECCCSCSSCCCCCCCCCCCCCCSSCCCCSCCCCCSCS
T ss_pred             CCCEEECCCCCCCCCCEEEEcCCeEEEEEEEEEecCCeEEEeeCCeEccCCccceeeecccccccceeeecCCceeeccC
Confidence            466653     35677889999999999999999999999999876543211                            


Q ss_pred             -cceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEEe
Q psy7036          54 -RTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFS  104 (254)
Q Consensus        54 -~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~  104 (254)
                       +..+..     ....+.|.|.+++.+|+|.|+|.|.|..|.....+.|.|.
T Consensus        83 ~r~~~~~-----~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~  129 (130)
T d1gxea_          83 GRVRVET-----TKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVKVI  129 (130)
T ss_dssp             SSCEEEE-----ETTEEEEECSCCCTTTCEEEEEEEECSSCEEEEEEEEEEC
T ss_pred             ceEEEEE-----CCCEEEEEECcCChhcCEEEEEEEEECCCEEEEEEEEEEE
Confidence             111111     1234589999999999999999999999999999988885

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

Probab=99.66  E-value=2e-16  Score=95.92  Aligned_cols=82  Identities=26%  Similarity=0.488  Sum_probs=66.4

Q ss_pred             eeeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcce-EEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcce
Q psy7036         121 IRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHK-FSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESN  199 (254)
Q Consensus       121 ~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~  199 (254)
                      ...+..|+.+.|.|.+.|.|.|.+.|++++..+....... .....+.    ++|.|.++..+|+|.|+|.|.|..|...
T Consensus        14 ~~~v~~G~~v~l~C~~~g~P~p~i~W~kng~~l~~~~~~~~~~~~~~~----~~L~I~~v~~~D~G~Y~C~a~N~~G~~~   89 (97)
T d3dara1          14 LHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQH----WSLIMESVVPSDKGNYTCVVENEYGSIN   89 (97)
T ss_dssp             EEEECTTCCEEEECCEEEESCCEEEEEETTEECCGGGSTTCCEEEGGG----TEEEECSCCGGGCEEEEEEEEETTEEEE
T ss_pred             cEEECCCCcEEEEEEEeEECCCEEEEEECCEeccccCceeeEEEcCCc----EEEEECCCCcccCEEEEEEEEECCCEEE
Confidence            4567789999999999999999999999999986544322 1111111    2799999999999999999999999988


Q ss_pred             EEEEEEE
Q psy7036         200 ATISLNF  206 (254)
Q Consensus       200 ~~~~~~v  206 (254)
                      .++.|.|
T Consensus        90 ~~~~l~V   96 (97)
T d3dara1          90 HTYHLDV   96 (97)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEE
Confidence            8888776

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=7e-16  Score=95.09  Aligned_cols=91  Identities=20%  Similarity=0.258  Sum_probs=70.1

Q ss_pred             CCceeecCCCeEE---EEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecC--CcceEEEEEEeccCCCCCeEEEEEEE
Q psy7036          15 PQLRQEDEGNRLI---FECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIG--TNKYLVALELDDVIETDAGLYKVKAK   89 (254)
Q Consensus        15 ~~~~~v~~g~~v~---l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~i~~~~~~d~G~Y~C~~~   89 (254)
                      |.++.+.+|..+.   +.|.+.|.|.+.++|++||..+..............  .....+.|.|.++...|+|.|+|.+.
T Consensus         4 p~~~~~~~g~~~~~~ci~~~v~G~P~P~v~W~~ng~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~A~   83 (107)
T d1he7a_           4 PASVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAA   83 (107)
T ss_dssp             CCCCCCCCCCCCCEEEEEEEECCSSCCEEEEEETTEECCCCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEEEEE
T ss_pred             CCEeEECCCeEEEEEEEEEEEEEecCCeEEEEEeeeEccCccceeeeeeeeeeeeeccceEEEECcccHHHCcEEEEEEE
Confidence            4455565566555   455889999999999999999987665544433322  23345679999999999999999999


Q ss_pred             cCCCceEEEEEEEEec
Q psy7036          90 NKMGEVAASINLNFSR  105 (254)
Q Consensus        90 ~~~~~~~~~~~l~v~~  105 (254)
                      |..|.....+.|.|..
T Consensus        84 N~~G~~~~~i~v~v~~   99 (107)
T d1he7a_          84 NPFGQASASIMAAFMD   99 (107)
T ss_dssp             ETTEEEEEEEEECCCS
T ss_pred             eCCCEEEEEEEEEEEc
Confidence            9999999999888864

>d1vcaa2 b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=2.2e-16  Score=94.37  Aligned_cols=86  Identities=12%  Similarity=0.148  Sum_probs=67.0

Q ss_pred             eEeCCCc-eeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEE
Q psy7036          11 FTQKPQL-RQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAK   89 (254)
Q Consensus        11 ~~~~~~~-~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~   89 (254)
                      +...|.. ..+.+|+++.|.|.+.|.|.+.++|++++..+.....   ...     .....|.|.+++..|+|.|+|.|.
T Consensus         3 i~i~P~~~~~~~~G~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~---~~~-----~~~~~L~I~~v~~~d~G~Y~C~a~   74 (90)
T d1vcaa2           3 IETTPESRYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNGKV---TNE-----GTTSTLTMNPVSFGNEHSYLCTAT   74 (90)
T ss_dssp             EEEESSSEEEEETTSCEEEEEEEESCSSCEEEEEETTCCCCSSEE---EEE-----TTEEEEEESSCCGGGCSEEEEEEE
T ss_pred             EEEECCCcEEEECCCEEEEEEeccCCCCceEEEEecCccceeeee---eee-----cCCcEEEEecccccccceEEEEEE
Confidence            3444543 4567999999999999999999999998776543221   111     122379999999999999999999


Q ss_pred             cCCCceEEEEEEEEe
Q psy7036          90 NKMGEVAASINLNFS  104 (254)
Q Consensus        90 ~~~~~~~~~~~l~v~  104 (254)
                      |..|.....+.|.|.
T Consensus        75 N~~g~~~~~~~v~V~   89 (90)
T d1vcaa2          75 CESRKLEKGIQVEIY   89 (90)
T ss_dssp             ETTEEEEEEEEEEEE
T ss_pred             eCCCEEEEEEEEEEE
Confidence            999998888888874

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.65  E-value=4.3e-16  Score=95.08  Aligned_cols=82  Identities=26%  Similarity=0.496  Sum_probs=65.6

Q ss_pred             eeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCc--ceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcce
Q psy7036         122 RQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKR--HKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESN  199 (254)
Q Consensus       122 ~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~  199 (254)
                      ..+..|+.+.|.|.+.|.|.|.+.|++++..+.....  .......+.    +.|.|.++..+|.|.|+|.|.|..|...
T Consensus        15 ~t~~~G~~v~l~C~~~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~----~~L~I~~v~~~D~G~Y~C~a~N~~G~~~   90 (100)
T d1qz1a3          15 ATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDS----SELTIRNVDKNDEAEYVCIAENKAGEQD   90 (100)
T ss_dssp             EETTSCCCEEEEEEEEEESCCEEEEEETTEECCCC--CCSSEEECTTS----CEEEECSCCGGGCEEEEEEEEETTEEEE
T ss_pred             EEEcCCCCEEEEEEEEEecCCEEEEEeCCcccccccccceeEEeecCc----eEEEeCCCCcccCEEEEEEEEECCCEEE
Confidence            3556799999999999999999999999998864432  122222222    3799999999999999999999999988


Q ss_pred             EEEEEEEe
Q psy7036         200 ATISLNFD  207 (254)
Q Consensus       200 ~~~~~~v~  207 (254)
                      ..+.|.|.
T Consensus        91 ~~~~l~V~   98 (100)
T d1qz1a3          91 ASIHLKVF   98 (100)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEEE
Confidence            88888875

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=1.8e-17  Score=97.08  Aligned_cols=79  Identities=23%  Similarity=0.262  Sum_probs=65.3

Q ss_pred             CCeeE--eCCCceeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEE
Q psy7036           8 APSFT--QKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYK   85 (254)
Q Consensus         8 ~p~~~--~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~   85 (254)
                      +|.|.  ..|....+.+|+.+.|.|.+.|.|.|.++|+|++..+...                  +.+.+++..|+|.|+
T Consensus         2 ~P~i~~~~~p~~~~~~~G~~~~l~C~a~G~P~P~v~W~k~g~~~~~~------------------~~~~~v~~~d~G~Y~   63 (84)
T d2oz4a3           2 GPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPI------------------GESVTVTRDLEGTYL   63 (84)
T ss_dssp             EEECCGGGSCSEEEEETTCEECCCCCCEEESCCEEEEEETTTEECCT------------------TSCEECCGGGCEEEE
T ss_pred             CCceeecCCCccEEEeCCCEEEEEEEEeEcCccEEEEEEeeccceee------------------eeeeccccCCCCEEE
Confidence            35553  3467788999999999999999999999999998765432                  234567889999999


Q ss_pred             EEEEcCCCceEEEEEEEEe
Q psy7036          86 VKAKNKMGEVAASINLNFS  104 (254)
Q Consensus        86 C~~~~~~~~~~~~~~l~v~  104 (254)
                      |.|.|..|..+..+.|.|.
T Consensus        64 C~A~N~~G~~~~~~~l~V~   82 (84)
T d2oz4a3          64 CRARSTQGEVTREVTVNVL   82 (84)
T ss_dssp             EEEEETTEEEEEEEEEEEE
T ss_pred             EEEEcCCCEEEEEEEEEEE
Confidence            9999999998888888885

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.65  E-value=5.1e-16  Score=92.90  Aligned_cols=79  Identities=22%  Similarity=0.361  Sum_probs=64.6

Q ss_pred             CCeeeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcc
Q psy7036         119 PSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGES  198 (254)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~  198 (254)
                      +....+.+|+.+.|.|.+.|.|.|.+.|+|++.......     ...++     .|.|.++..+|+|.|+|.|.|..|..
T Consensus        12 p~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~~~~~~~~~-----~~~~~-----~L~I~~v~~~D~G~Y~C~a~N~~G~~   81 (91)
T d1cs6a3          12 PADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSKW-----LSSEP-----LLHIQNVDFEDEGTYECEAENIKGRD   81 (91)
T ss_dssp             CSEEEEETTCCEEEECEEEEESCCEEEEEECCSCCSCCC-----SBSSS-----EEEECSCCGGGCEEEEEEEEETTEEE
T ss_pred             CCcEEEecCCcEEEEEEEEEccCCEEEEEecccccceEe-----eeeee-----EEEeCCCCccCCEEEEEEEEECCCEE
Confidence            467788899999999999999999999999765432211     11122     79999999999999999999999998


Q ss_pred             eEEEEEEEe
Q psy7036         199 NATISLNFD  207 (254)
Q Consensus       199 ~~~~~~~v~  207 (254)
                      ...+.|.|.
T Consensus        82 ~~~~~l~V~   90 (91)
T d1cs6a3          82 TYQGRIIIH   90 (91)
T ss_dssp             EEEEEEEEE
T ss_pred             EEEEEEEEE
Confidence            888888775

>d1fnla2 b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=99.64  E-value=4.6e-16  Score=92.37  Aligned_cols=80  Identities=9%  Similarity=0.141  Sum_probs=61.0

Q ss_pred             EeCCCceeecCCCeEEEEEEEee-CCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEc
Q psy7036          12 TQKPQLRQEDEGNRLIFECQLLC-NPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKN   90 (254)
Q Consensus        12 ~~~~~~~~v~~g~~v~l~C~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~   90 (254)
                      +..+....+.+|++++|.|.+.+ .|.+.+.|||||..+.....       ..      .|.|.+++.+|+|.|+|.+.|
T Consensus         6 ilq~p~~~v~eG~~v~L~C~~~~~~p~~~~~W~kng~~~~~~~~-------~~------~l~I~~v~~~dsG~Y~C~a~n   72 (89)
T d1fnla2           6 LLQAPRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKYFHH-------NS------DFHIPKATLKDSGSYFCRGLV   72 (89)
T ss_dssp             EEECSCSEEETTCCEEEEEEECTTCCCEEEEEEETTEEEEEEEE-------CC------CEEESSCCGGGCEEEEEEEEE
T ss_pred             EEECCCCeEccCCeEEEEEEecCCCCCcEEEEEEcccccceecc-------cc------ccEECccceeccceEEEEEEe
Confidence            33444556889999999999864 56678999999988754221       11      589999999999999999999


Q ss_pred             CCCceE-EEEEEEEe
Q psy7036          91 KMGEVA-ASINLNFS  104 (254)
Q Consensus        91 ~~~~~~-~~~~l~v~  104 (254)
                      ..+... ..+.|.|.
T Consensus        73 ~~~~~~S~~v~itV~   87 (89)
T d1fnla2          73 GSKNVSSETVNITIT   87 (89)
T ss_dssp             TTEEEECCCEEEEEE
T ss_pred             CCCCeEEeeEEEEEE
Confidence            887643 45667765

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=8e-16  Score=92.18  Aligned_cols=87  Identities=16%  Similarity=0.366  Sum_probs=69.2

Q ss_pred             CCeeeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcc
Q psy7036         119 PSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGES  198 (254)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~  198 (254)
                      |..+.+.+|+.+.|.|.+.+.|.+.+.|+|++..+.......+....+  ...+.|.|.+++.+|.|.|+|.|.|..|..
T Consensus         3 P~~~~v~~G~~~~l~C~v~g~p~p~v~W~k~g~~l~~~~~~~~~~~~~--~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~   80 (91)
T d1rhfa1           3 PVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQ--HWIGFLSLKSVERSDAGRYWCQVEDGGETE   80 (91)
T ss_dssp             CEEEEEETTCCEEEEEEEESCSSCCEEEEETTEECCSSEEEEEEEETT--EEEEEEEESSCCGGGCEEEEEEESSCTTCE
T ss_pred             CeeEEEcCCCeEEEEEEEEecCCceEEEEEeecccccceeeeeeeccc--CceeeEEECCCCcccCEEEEEEEEECCCCE
Confidence            456778899999999999999999999999999987665544433332  233479999999999999999999999874


Q ss_pred             -eEEEEEEEe
Q psy7036         199 -NATISLNFD  207 (254)
Q Consensus       199 -~~~~~~~v~  207 (254)
                       +..+.|.|.
T Consensus        81 ~S~~~~l~V~   90 (91)
T d1rhfa1          81 ISQPVWLTVE   90 (91)
T ss_dssp             ECCCEEEEEE
T ss_pred             EEEEEEEEEE
Confidence             456666664

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=8.6e-17  Score=96.22  Aligned_cols=81  Identities=14%  Similarity=0.138  Sum_probs=65.1

Q ss_pred             CCCCCCeeEeCCCceeecCCCeEEEEEEEeeCCC-CceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCe
Q psy7036           4 AEDFAPSFTQKPQLRQEDEGNRLIFECQLLCNPK-PDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAG   82 (254)
Q Consensus         4 ~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~-~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G   82 (254)
                      .+..+|.|...+..+.+.+|++++|.|.+.+.+. +.++|+|++..+....+..  ...++      +|.|.+++.+|+|
T Consensus         2 ~P~~~P~~~~~~~~v~~~~G~~v~L~C~~~g~~~~~~i~W~k~~~~l~~~~~~~--~~~~~------~L~I~~v~~~D~G   73 (93)
T d1n26a1           2 APRRCPAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRW--AGMGR------RLLLRSVQLHDSG   73 (93)
T ss_dssp             CSSCCCCCCCCTTEEEECTTCCEEEECTTSCTTCCSEEEEEEECSSSSCCCEEE--EEESS------EEEECSCCGGGCE
T ss_pred             CCCCCCcEEeCCCCEEEeCCCcEEEEEEeecCCCCceEEEEEccccccceeeEE--ecCCC------EEEECCCChhcCE
Confidence            3456899999999999999999999999988664 6899999998876544322  22222      7999999999999


Q ss_pred             EEEEEEEcCC
Q psy7036          83 LYKVKAKNKM   92 (254)
Q Consensus        83 ~Y~C~~~~~~   92 (254)
                      .|+|.+.|..
T Consensus        74 ~Y~C~a~n~~   83 (93)
T d1n26a1          74 NYSCYRAGRP   83 (93)
T ss_dssp             EEEEESSSSC
T ss_pred             EEEEEECCcc
Confidence            9999987654

>d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=99.64  E-value=9.4e-16  Score=90.86  Aligned_cols=78  Identities=9%  Similarity=0.224  Sum_probs=61.0

Q ss_pred             CCCceeecCCCeEEEEEEEee-CCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcCC
Q psy7036          14 KPQLRQEDEGNRLIFECQLLC-NPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKM   92 (254)
Q Consensus        14 ~~~~~~v~~g~~v~l~C~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~   92 (254)
                      .+....+.+|++++|.|.+.+ .|.+.+.|||+|..+......             ..|.|.+++.+|+|.|+|.+.|..
T Consensus         6 q~p~~~v~eG~~v~L~C~~~~~~p~~~~~W~k~g~~~~~~~~~-------------~~l~i~~v~~~dsG~Y~C~a~n~~   72 (88)
T d2fcba2           6 QTPHLEFQEGETIVLRCHSWKDKPLVKVTFFQNGKSKKFSRSD-------------PNFSIPQANHSHSGDYHCTGNIGY   72 (88)
T ss_dssp             ECSCSEECTTCCEEEEEEEGGGCCCEEEEEEETTEEEEEESSC-------------CEEEETTCCGGGCEEEEEEEEETT
T ss_pred             eCCCCeEecCCeEEEEEEecCCCCCcEEEEEeecccccccccc-------------cccccCccCHHHCCeEEEEEEeCC
Confidence            334456889999999999964 566789999999987543221             169999999999999999999988


Q ss_pred             CceE-EEEEEEEe
Q psy7036          93 GEVA-ASINLNFS  104 (254)
Q Consensus        93 ~~~~-~~~~l~v~  104 (254)
                      +... ..+.|.|.
T Consensus        73 g~~~S~~v~l~V~   85 (88)
T d2fcba2          73 TLYSSKPVTITVQ   85 (88)
T ss_dssp             EEEECCCEEEEEC
T ss_pred             CCEEeeeEEEEEe
Confidence            7643 45677775

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.64  E-value=1.7e-15  Score=91.66  Aligned_cols=85  Identities=15%  Similarity=0.236  Sum_probs=67.8

Q ss_pred             CeeeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcce
Q psy7036         120 SIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESN  199 (254)
Q Consensus       120 ~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~  199 (254)
                      ....+..|+.+.|.|.+.+.|.+.+.|++++..+......++.......  .+.|.|.+++.+|+|.|+|.|.|..|...
T Consensus        11 ~~~~~~~G~~v~l~C~~~g~P~~~v~W~k~g~~i~~~~~~~~~~~~~~~--~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~   88 (97)
T d1biha3          11 KDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTS--GKRLLFKTTLPEDEGVYTCEVDNGVGKPQ   88 (97)
T ss_dssp             CSEEEETTSCEEEEEEEECSSCCCCEEEETTEECCCCTTSSEESCSSST--TSEEEESSCCGGGCEEEEEEECCSSSSCE
T ss_pred             CCEEEecCCeEEEEEEEEEecCCEEEEEEeeeeccccceeeeeeeeecC--CCEEEEEeccccccEEEEEEEEECCCcEE
Confidence            4567889999999999999999999999999998765554443322221  23799999999999999999999999764


Q ss_pred             -EEEEEEE
Q psy7036         200 -ATISLNF  206 (254)
Q Consensus       200 -~~~~~~v  206 (254)
                       .++.|.|
T Consensus        89 s~s~~L~V   96 (97)
T d1biha3          89 KHSLKLTV   96 (97)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEEE
Confidence             4677765

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=6.8e-16  Score=93.44  Aligned_cols=91  Identities=14%  Similarity=0.241  Sum_probs=64.6

Q ss_pred             CCeeEeCCCceeecCCCeEEEEEEEeeCCCCceEEEe--CCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEE
Q psy7036           8 APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFR--GETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYK   85 (254)
Q Consensus         8 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~   85 (254)
                      .|.|. .+.+..+.+|++++|.|.+.|.|.|.+.|++  ++........... .   ......++|.|.++..+|+|.|+
T Consensus         2 ~P~f~-~~~~~~v~~G~~v~l~C~~~g~p~p~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~L~I~~v~~~D~G~Y~   76 (96)
T d2c9aa1           2 TPHFL-RIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKV-T---SSRRFIASFNVVNTTKRDAGKYR   76 (96)
T ss_dssp             SCEEC-CCCCEEECSSSCEEEEEEEESCCCSSCEEEEEETTBCCCCEEEEEE-E---ETTEEEEEEEECSCCGGGCSEEE
T ss_pred             cCeec-ccCCEEEeCCCEEEEEEEEeecCCCcEEEEEeeeeeeeecCCceeE-E---EeecCceEEEECCCCHHHCeEEE
Confidence            68897 5889999999999999999999887665443  2222111111111 1   11223447999999999999999


Q ss_pred             EEEEcCCCceEE-EEEEEE
Q psy7036          86 VKAKNKMGEVAA-SINLNF  103 (254)
Q Consensus        86 C~~~~~~~~~~~-~~~l~v  103 (254)
                      |.+.|..|...+ .+.|.|
T Consensus        77 C~a~N~~G~~~s~~a~L~V   95 (96)
T d2c9aa1          77 CMIRTEGGVGISNYAELVV   95 (96)
T ss_dssp             EEEEETTEEEEEEEEEEEE
T ss_pred             EEEEeCCCeEEEEEEEEEE
Confidence            999999998544 467766

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=6.5e-15  Score=89.99  Aligned_cols=83  Identities=24%  Similarity=0.416  Sum_probs=67.9

Q ss_pred             CCCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcC-CCCceeeEEEEccCCCCCceeEEEEEEcCCCcceEEEEE
Q psy7036         126 DGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDK-DGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISL  204 (254)
Q Consensus       126 ~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~  204 (254)
                      .+....+.|.+.|+|.|.+.|++++..+..+....+.... ......+.|.|.+++.+|.|.|+|.|.|..|..+.++.|
T Consensus        15 ~~~~~~i~~~v~G~P~P~i~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~v   94 (103)
T d1wwbx_          15 SDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISA   94 (103)
T ss_dssp             CCCEEEEEEEEECSSCCEEEEEETTEEECCCSSEEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEE
T ss_pred             cceeEEEEEEEEEeCCCEEEEEECCEEeeeeeeeeeeecccccccceEEEEECCCCHHhCceEEEEEeccCCEEEEEEEE
Confidence            5677889999999999999999999999766554443332 222345689999999999999999999999999999888


Q ss_pred             EEec
Q psy7036         205 NFDS  208 (254)
Q Consensus       205 ~v~~  208 (254)
                      .|..
T Consensus        95 ~V~~   98 (103)
T d1wwbx_          95 HFMG   98 (103)
T ss_dssp             CCSC
T ss_pred             EEEe
Confidence            7754

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=4.8e-15  Score=91.58  Aligned_cols=95  Identities=17%  Similarity=0.192  Sum_probs=71.5

Q ss_pred             CCeeEeCCC-ceeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEee-------cCCcceEEEEEEeccCCC
Q psy7036           8 APSFTQKPQ-LRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTP-------IGTNKYLVALELDDVIET   79 (254)
Q Consensus         8 ~p~~~~~~~-~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~l~i~~~~~~   79 (254)
                      .|.|...+. ...+.+|+++.|.|.+.+.|.+.+.|+++|..+............       .......+.|.|.+++..
T Consensus         1 kP~i~~p~~~~i~v~~G~~v~l~C~v~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~   80 (107)
T d1iray3           1 RPVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESR   80 (107)
T ss_dssp             CCEEEECCSEEEECCTTCCEEEEEEEEECTTCEEEEEETTEECCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCCGG
T ss_pred             CCCEEEECCCEEEEeCCCEEEEEEEeccCCCCeEEEEECCcccccccceeeeeeeeeccceeeecccceEEEEEeecchH
Confidence            367766553 356788999999999999999999999999988654433221110       111234568999999999


Q ss_pred             CCe-EEEEEEEcCCCceEEEEEEE
Q psy7036          80 DAG-LYKVKAKNKMGEVAASINLN  102 (254)
Q Consensus        80 d~G-~Y~C~~~~~~~~~~~~~~l~  102 (254)
                      |.| .|+|.|.|..|.....+.|.
T Consensus        81 D~g~~Y~C~A~N~~G~~~~~i~L~  104 (107)
T d1iray3          81 FYKHPFTCFAKNTHGIDAAYIQLI  104 (107)
T ss_dssp             GGSSCEEEEEECSSCEEEEEEEEE
T ss_pred             HCCcEEEEEEEeCCCeEEEEEEEE
Confidence            999 59999999999988877765

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=1.3e-15  Score=91.60  Aligned_cols=89  Identities=13%  Similarity=0.305  Sum_probs=66.8

Q ss_pred             CCCCeeEeCCCc-eeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCC-cceEEEeecCCcceEEEEEEeccCCCCCeE
Q psy7036           6 DFAPSFTQKPQL-RQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDT-RTVMKTTPIGTNKYLVALELDDVIETDAGL   83 (254)
Q Consensus         6 ~~~p~~~~~~~~-~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~   83 (254)
                      ..+|.|...+.+ ..+.+|+++.|.|.+. .|.+.++||+||..+..+. .+.+...  +   ..+.|.|.++...|+|.
T Consensus         3 ~~~~~f~~~l~~~~~v~~G~~v~l~c~v~-~p~~~v~W~k~g~~i~~~~~~~~~~~~--~---~~~~L~I~~~~~~D~G~   76 (94)
T d1pd6a_           3 KKSTAFQKKLEPAYQVSKGHKIRLTVELA-DHDAEVKWLKNGQEIQMSGSKYIFESI--G---AKRTLTISQCSLADDAA   76 (94)
T ss_dssp             STTSSCSEECCSEEEEETTSCEEEEEECS-SSSSCCEEEESSSEECCCSSSSEEEEE--T---TEEEEEECSCSSSSCEE
T ss_pred             CCCCcEEEeCCCCEEECcCCeEEEEEEEC-CCCceEEEEEcCccceeeeeeEeeecc--C---CeEEeecCCCCceecEE
Confidence            456777776654 5789999999999985 5888999999999987654 3333322  1   23489999999999999


Q ss_pred             EEEEEEcCCCceEEEEEEEEe
Q psy7036          84 YKVKAKNKMGEVAASINLNFS  104 (254)
Q Consensus        84 Y~C~~~~~~~~~~~~~~l~v~  104 (254)
                      |+|.+.|.    ..++.|.|.
T Consensus        77 Y~c~a~n~----~~s~~l~V~   93 (94)
T d1pd6a_          77 YQCVVGGE----KCSTELFVK   93 (94)
T ss_dssp             EEEEETTE----EECCEEEEE
T ss_pred             EEEEEeeE----EEEEEEEEE
Confidence            99998653    445566654

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=9.9e-15  Score=90.54  Aligned_cols=96  Identities=17%  Similarity=0.278  Sum_probs=73.5

Q ss_pred             CccccCCCeeeecCCCeEEEEEEEeeCC---CCeEEEEECCEecccC-CcceEE----EcCCCCceeeEEEEccCCCCCc
Q psy7036         113 PTFLKKPSIRQEDDGKRLLFECRIQADP---APTVIWSHSGVQVKED-KRHKFS----IDKDGHSYFASLEIIDVTIEDA  184 (254)
Q Consensus       113 ~~~~~~~~~~~~~~g~~~~l~C~~~~~~---~~~~~W~~~~~~~~~~-~~~~~~----~~~~~~~~~~~l~i~~~~~~d~  184 (254)
                      +.+...+....+..|++++|.|.+.+.|   .|.+.|++++...... ....+.    .......+.+.|.|.+++.+|+
T Consensus         5 ~~Fv~~P~~~~v~~G~~v~l~C~v~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~   84 (110)
T d2avga1           5 GLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPAFT   84 (110)
T ss_dssp             CSEEECCCCEEEETTSEEEEEEEEECCSCSSSCEEEEECSTTCCSTTTCSSSEEEEEEEETTTTEEEEEEEEESCCTTCC
T ss_pred             CEeEECCCeEEEECCCCEEEEEeecCCCCCCCCEEEEEeCceeeecccCCceeEeeeeeEEecccCEEEEEEeccCHHHC
Confidence            4556667778899999999999999988   5789999987543222 111111    1122334556899999999999


Q ss_pred             eeEEEEEEcCCCcceEEEEEEEec
Q psy7036         185 GKYKVTAKNELGESNATISLNFDS  208 (254)
Q Consensus       185 G~y~C~~~~~~~~~~~~~~~~v~~  208 (254)
                      |.|+|.|.|..|....++.|.|..
T Consensus        85 G~Y~C~a~N~~G~~~~~~~L~V~~  108 (110)
T d2avga1          85 GGYRCEVSTKDKFDCSNFNLTVHE  108 (110)
T ss_dssp             EEEEEEEEETTEEEEEEEEEEEES
T ss_pred             cEEEEEEEECCCeEEEEEEEEEEe
Confidence            999999999999999999999874

>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=2.3e-16  Score=97.35  Aligned_cols=96  Identities=13%  Similarity=0.167  Sum_probs=68.1

Q ss_pred             CCeeEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCc---ceEEEEEEeccCCCCCeEE
Q psy7036           8 APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTN---KYLVALELDDVIETDAGLY   84 (254)
Q Consensus         8 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~i~~~~~~d~G~Y   84 (254)
                      .+.+...+..+.+.+|+++.|.|.+.|.|.+.+.|++++..+................   .....|.|.+++.+|+|.|
T Consensus         4 ~v~V~~~~~~v~v~~g~~v~L~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y   83 (105)
T d1nbqa1           4 SVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTREDTGTY   83 (105)
T ss_dssp             CCEEECSCSBCCEETTCCCEEECEEESCSSEEEEEEEEETTEEEESEETTEECTTTTTTCEEETTEEECSCCCTTSCSEE
T ss_pred             ceEEECCCCeEEEeCCCeEEEEEEeCCCCCCeeEEEeeeeceeeeeeccceeeccccceeeecCceEEEecccccceeeE
Confidence            3455566777889999999999999999999999999765433211111111111000   0112799999999999999


Q ss_pred             EEEEEcCCCceEEEEEEEE
Q psy7036          85 KVKAKNKMGEVAASINLNF  103 (254)
Q Consensus        85 ~C~~~~~~~~~~~~~~l~v  103 (254)
                      +|.+.|..|.....+.|.|
T Consensus        84 ~C~a~n~~G~~~~~~~v~v  102 (105)
T d1nbqa1          84 TCMVSEEGGNSYGEVKVKL  102 (105)
T ss_dssp             EEEEEETTSSCEECCEEEC
T ss_pred             EEEEEECCCCEEEEEEEEE
Confidence            9999999998877666665

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.62  E-value=9.3e-16  Score=93.99  Aligned_cols=96  Identities=13%  Similarity=0.135  Sum_probs=66.7

Q ss_pred             CeeEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeec---CCcceEEEEEEeccCCCCCeEEE
Q psy7036           9 PSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPI---GTNKYLVALELDDVIETDAGLYK   85 (254)
Q Consensus         9 p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~i~~~~~~d~G~Y~   85 (254)
                      |.+...+....+.+|+++.|.|.+.+.|.+.+.|++++................   ......++|.|.+++.+|+|.|+
T Consensus         2 ~sV~t~~~~v~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tL~I~~v~~~D~G~Y~   81 (102)
T d1f97a1           2 GSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGITFSSVTRKDNGEYT   81 (102)
T ss_dssp             CEEECSCSEEEEETTCCEEEECEEESCSSEEEEEEEEETTEEEEEEETTEECGGGTTTEEEETTEEEESCCCGGGCEEEE
T ss_pred             CCEEccCCcEEEeCCCEEEEEEEcCCCCCCeEEEEeccccceeeeccccccccceeeEEEecCCEEEEeECCccCCEEEE
Confidence            566677778899999999999999999999999998543221100000000000   00011227999999999999999


Q ss_pred             EEEEcCCCceEEEEEEEEe
Q psy7036          86 VKAKNKMGEVAASINLNFS  104 (254)
Q Consensus        86 C~~~~~~~~~~~~~~l~v~  104 (254)
                      |.+.|..|.....+.+.|.
T Consensus        82 C~a~n~~g~~~~~~~v~v~  100 (102)
T d1f97a1          82 CMVSEEGGQNYGEVSIHLT  100 (102)
T ss_dssp             EEEEETTSSSEEEEEEEEE
T ss_pred             EEEEECCCCEEEEEEEEEE
Confidence            9999999987766666553

>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Tyrosine-protein kinase receptor tyro3, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=2.3e-15  Score=88.40  Aligned_cols=81  Identities=15%  Similarity=0.291  Sum_probs=62.5

Q ss_pred             CccccCCCeeeecCCCeEEEEEEEeeCCCC-eEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEE
Q psy7036         113 PTFLKKPSIRQEDDGKRLLFECRIQADPAP-TVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTA  191 (254)
Q Consensus       113 ~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~  191 (254)
                      |.+...+....+..|+.+.|.|.+.|.|.| .+.|+||+..+......             .+.|.....+|+|.|+|.|
T Consensus         2 P~f~~~P~~~~v~~G~~~~l~C~~~g~P~P~~i~W~k~g~~i~~~~~~-------------~~~l~~~~~~d~G~Y~C~A   68 (85)
T d1rhfa2           2 PFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPAPS-------------PSVLNVTGVTQSTMFSCEA   68 (85)
T ss_dssp             CEEEECCCCEEECTTCCEEEEEEEECSSSCCEEEEEETTEECSCSEES-------------SEEEEECCCSSCEEEEEEE
T ss_pred             CcEEEeCCcEEEcCCCEEEEEEEEecCCcceEEEEEECCEECCCCCCc-------------ceEEecCCccccEEEEEEE
Confidence            344556667788899999999999999987 89999999987644211             3455566678999999999


Q ss_pred             EcCCCcc-eEEEEEEE
Q psy7036         192 KNELGES-NATISLNF  206 (254)
Q Consensus       192 ~~~~~~~-~~~~~~~v  206 (254)
                      .|..|.. +..+.|.|
T Consensus        69 ~N~~G~~~S~~~~v~V   84 (85)
T d1rhfa2          69 HNLKGLASSRTATVHL   84 (85)
T ss_dssp             EETTEEEECCCEEEEE
T ss_pred             EcCCCcEEEEEEEEEE
Confidence            9999964 44666665

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.61  E-value=1.5e-15  Score=91.53  Aligned_cols=82  Identities=18%  Similarity=0.336  Sum_probs=66.5

Q ss_pred             CCccccCCCeeeecCCCeEEEEEEEeeCCCC-eEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEE
Q psy7036         112 APTFLKKPSIRQEDDGKRLLFECRIQADPAP-TVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVT  190 (254)
Q Consensus       112 ~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~  190 (254)
                      +|.+...+....+.+|+.+.|.|.+.+.|.+ .+.|+++|..+............++     +|.|.++..+|.|.|+|.
T Consensus         2 ~P~i~~~p~~~~v~~g~~~~l~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~-----~L~i~~v~~~D~G~Y~C~   76 (94)
T d1biha1           2 YPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEG-----SLVFLRPQASDEGHYQCF   76 (94)
T ss_dssp             CCEECCCCSEEEEETTSCEEECCCEESCCSSCEEEEEESSSBCCTTTTTEEECTTSC-----CEEESSCCGGGCEEEEEE
T ss_pred             CCEEEecCCcEEEeCCCeEEEEEEecCCCCeeEEEEEeeeeeeeeecceeeecccce-----EEEEeccChhcCeEEEEE
Confidence            3556666778889999999999999999866 6999999998866554433333333     799999999999999999


Q ss_pred             EEcCCCcc
Q psy7036         191 AKNELGES  198 (254)
Q Consensus       191 ~~~~~~~~  198 (254)
                      |.|..|..
T Consensus        77 a~N~~G~~   84 (94)
T d1biha1          77 AETPAGVA   84 (94)
T ss_dssp             EEETTEEE
T ss_pred             EEeCCCEE
Confidence            99999965

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=5.3e-15  Score=92.28  Aligned_cols=93  Identities=17%  Similarity=0.320  Sum_probs=70.4

Q ss_pred             ccCCCeeeecCCCeEEEEEEEeeCC---CCeEEEEECCEeccc---CCcceE--EEcCCCCceeeEEEEccCCCCCceeE
Q psy7036         116 LKKPSIRQEDDGKRLLFECRIQADP---APTVIWSHSGVQVKE---DKRHKF--SIDKDGHSYFASLEIIDVTIEDAGKY  187 (254)
Q Consensus       116 ~~~~~~~~~~~g~~~~l~C~~~~~~---~~~~~W~~~~~~~~~---~~~~~~--~~~~~~~~~~~~l~i~~~~~~d~G~y  187 (254)
                      ...+....+..|+.+.|.|.+.|.|   .|.+.|+|++.....   ......  ..........+.|.|.+++.+|+|.|
T Consensus         4 ~~~P~~~~v~~G~~v~l~C~v~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y   83 (113)
T d2dava1           4 IEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNFAGNY   83 (113)
T ss_dssp             CSCCCCCEEETTCCEEEEEEEECCCSSSCCEEEEEESSSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCTTSCEEE
T ss_pred             eECCceEEEeCCCEEEEEEEEccCCCCCCCEEEEEEeeccccccccceeeeeccceeeEeecCEEEEEEccCCHHHCeEE
Confidence            4455677888999999999999988   579999998654321   111111  12223334456899999999999999


Q ss_pred             EEEEEcCCCcceEEEEEEEec
Q psy7036         188 KVTAKNELGESNATISLNFDS  208 (254)
Q Consensus       188 ~C~~~~~~~~~~~~~~~~v~~  208 (254)
                      +|.|.|..|....++.|.|..
T Consensus        84 ~C~a~N~~G~~~~~~~L~V~~  104 (113)
T d2dava1          84 RCEVTYKDKFDSCSFDLEVHE  104 (113)
T ss_dssp             EEEEECSSCEEEECCEEEEEC
T ss_pred             EEEEEeCCCEEEEEEEEEEEc
Confidence            999999999998888888875

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=7.8e-15  Score=89.62  Aligned_cols=94  Identities=17%  Similarity=0.335  Sum_probs=69.6

Q ss_pred             CCccccCCCeeeecCCCeEEEEEEEeeCCCC-eEEEEECCEec----ccCCcceEEEcCCCCceeeEEEEccCC-CCCce
Q psy7036         112 APTFLKKPSIRQEDDGKRLLFECRIQADPAP-TVIWSHSGVQV----KEDKRHKFSIDKDGHSYFASLEIIDVT-IEDAG  185 (254)
Q Consensus       112 ~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~-~~~W~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~G  185 (254)
                      ||.+...+....+.+|+.+.|.|.+.+.|++ .+.|++++...    ......++.......  .+.|.|.++. .+|+|
T Consensus         2 PP~i~~~~~~~~v~~G~~v~l~C~v~g~P~p~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~--~~~L~I~~v~~~~D~G   79 (101)
T d3b5ha1           2 PPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQG--RSELHIENLNMEADPG   79 (101)
T ss_dssp             SCCCEESCSEEEECTTSCEEEEEECCCSSCCCEEEEEECCSSSCEECCTTGGGTEEEEEETT--EEEEEECSCCTTTSSE
T ss_pred             CceEEEcCCcEEECcCCeEEEEEEEEecCCeeEEEEEeccceeeeecccCCCceEEEEeCCC--EEEEEEeccccccCCE
Confidence            5666666677888999999999999999877 69999975332    222222222222221  2489999998 57999


Q ss_pred             eEEEEEEcCCCcceEEEEEEEe
Q psy7036         186 KYKVTAKNELGESNATISLNFD  207 (254)
Q Consensus       186 ~y~C~~~~~~~~~~~~~~~~v~  207 (254)
                      .|+|.|.|..|.....+.|.|+
T Consensus        80 ~Y~C~A~N~~G~~~~~~~L~Vr  101 (101)
T d3b5ha1          80 QYRCNGTSSKGSDQAIITLRVR  101 (101)
T ss_dssp             EEEEEEEETTEEEEEEEEEEEC
T ss_pred             EEEEEEEECCCEEEEEEEEEEC
Confidence            9999999999999888888774

>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=1.6e-15  Score=89.99  Aligned_cols=78  Identities=14%  Similarity=0.234  Sum_probs=60.8

Q ss_pred             CCCceeecCCCeEEEEEEEeeC-CCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcCC
Q psy7036          14 KPQLRQEDEGNRLIFECQLLCN-PKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKM   92 (254)
Q Consensus        14 ~~~~~~v~~g~~v~l~C~~~~~-~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~   92 (254)
                      .+....+.+|++++|.|.+.+. +...+.|||||..+......        .     .|.|.+++.+|+|.|+|.+.|..
T Consensus         6 q~p~~~V~eG~~v~L~C~~~~~~~~~~~~w~k~g~~~~~~~~~--------~-----~l~i~~~~~~dsG~Y~C~a~n~~   72 (89)
T d1f2qa2           6 QASAEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYWYEN--------H-----NISITNATVEDSGTYYCTGKVWQ   72 (89)
T ss_dssp             EESCSEEETTSCEEEEEEEGGGCCEEEEEEEETTEECCSCCCS--------S-----EEEESSCCGGGCEEEEEEEEETT
T ss_pred             eCCcCeEeCCCEEEEEEEecCCCCCeEEEEEEeeecccccccc--------c-----eEEEeeeeeecCcEEEEEEEeCC
Confidence            3445568899999999999654 56689999999987543221        1     69999999999999999999987


Q ss_pred             Cce-EEEEEEEEe
Q psy7036          93 GEV-AASINLNFS  104 (254)
Q Consensus        93 ~~~-~~~~~l~v~  104 (254)
                      +.. +..+.|.|.
T Consensus        73 ~~~~S~~v~i~V~   85 (89)
T d1f2qa2          73 LDYESEPLNITVI   85 (89)
T ss_dssp             EEEECCCEEEEEE
T ss_pred             CCeEeeeEEEEEE
Confidence            653 346677776

>d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=99.61  E-value=2.3e-15  Score=88.38  Aligned_cols=73  Identities=19%  Similarity=0.325  Sum_probs=60.0

Q ss_pred             CCCeeEeCCCceeecCCCeEEEEEEEeeCCCCc-eEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEE
Q psy7036           7 FAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPD-IVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYK   85 (254)
Q Consensus         7 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~-v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~   85 (254)
                      .+|.+...|....+.+|++++|+|.+.+.+.+. +.|++++..+.....               .|.|.+++..|+|.|+
T Consensus         4 Pkpvi~~~P~~~~v~~G~~vtL~C~~~~~~~~~~~~~~~~~~~~~~~~~---------------~l~i~~~~~~d~G~Y~   68 (84)
T d1fnla1           4 PKAVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQAS---------------SYFIDAATVNDSGEYR   68 (84)
T ss_dssp             CCCEEEEESCCSEEETTCCEEEEEECCCBTTBCCCEEEETTEEEESSCS---------------EEEESSCCGGGCEEEE
T ss_pred             CCCEEEECCCCcEEeCCCeEEEEEEeccCCCCeEEEEeeeceeeeecce---------------eeEecCCcccCCEEEE
Confidence            357788889888999999999999998887764 678899887654322               6999999999999999


Q ss_pred             EEEEcCCCc
Q psy7036          86 VKAKNKMGE   94 (254)
Q Consensus        86 C~~~~~~~~   94 (254)
                      |.+.+...+
T Consensus        69 C~a~~s~~S   77 (84)
T d1fnla1          69 CQTNLSTLS   77 (84)
T ss_dssp             EECSSSCCC
T ss_pred             EEccCCCcc
Confidence            998876544

>d1l6za2 b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.60  E-value=2.2e-15  Score=91.06  Aligned_cols=87  Identities=20%  Similarity=0.284  Sum_probs=68.3

Q ss_pred             CCeeEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEE
Q psy7036           8 APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVK   87 (254)
Q Consensus         8 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~   87 (254)
                      .|.+.  +....+.+|++++|+|.+.+ +.+.+.|+++|..+....+..+.  ....     .|.|.+++.+|+|.|+|.
T Consensus         5 ~P~i~--~~~~~v~~g~~v~l~C~~~~-~~~~v~W~~~~~~l~~~~~~~~~--~~~~-----~L~I~~v~~~d~G~Y~C~   74 (96)
T d1l6za2           5 QPFLQ--VTNTTVKELDSVTLTCLSND-IGANIQWLFNSQSLQLTERMTLS--QNNS-----ILRIDPIKREDAGEYQCE   74 (96)
T ss_dssp             CCCEE--CSCSEECTTSCEEEEECCCC-SSCEEEEEETTEECCCCTTEEEE--TTTT-----EEEECSCCGGGCEEEEEE
T ss_pred             CCeEE--cCceEEeCCCeEEEEEccCC-CCCCEEEEEeeeecccccceecc--CCce-----EEEEeccchhhceEEEEE
Confidence            45554  45667899999999999865 56789999999999877665442  1111     799999999999999999


Q ss_pred             EEcCCCceE-EEEEEEEe
Q psy7036          88 AKNKMGEVA-ASINLNFS  104 (254)
Q Consensus        88 ~~~~~~~~~-~~~~l~v~  104 (254)
                      |.|..|... ..+.|.|.
T Consensus        75 a~N~~g~~~S~~~~L~V~   92 (96)
T d1l6za2          75 ISNPVSVRRSNSIKLDII   92 (96)
T ss_dssp             EESSSCCEECCCCEEEEC
T ss_pred             EEeCCCCeEEEeEEEEEE
Confidence            999988764 45778875

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.60  E-value=5.4e-15  Score=88.10  Aligned_cols=80  Identities=24%  Similarity=0.356  Sum_probs=64.7

Q ss_pred             CCeeeecCCCeEEEEEEEe-eCCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCc
Q psy7036         119 PSIRQEDDGKRLLFECRIQ-ADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGE  197 (254)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~-~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~  197 (254)
                      +....+.+|+.+.|.|.+. +.|.+.+.|+|++..+.....   .. .++     .|.|.++..+|+|.|+|.|.|..|.
T Consensus         9 p~~~~v~~G~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~---~~-~~~-----~L~i~~v~~~d~G~Y~C~a~N~~G~   79 (89)
T d1gl4b_           9 QRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRA---MD-FNG-----ILTIRNVQPSDAGTYVCTGSNMFAM   79 (89)
T ss_dssp             CCEEEECTTCCEEEEEEEEESSSCCEEEEEEGGGBCCCTTE---EE-ETT-----EEEECSCCGGGCEEEEEEEECSSCE
T ss_pred             CCeEEEeCCCcEEEEEEccCCCCCCEEEEecCCceeecccc---Ee-ece-----EEEEecCCcccCEEEEEEEEECCCE
Confidence            4567788999999999987 577889999999877654321   11 122     7999999999999999999999998


Q ss_pred             ceEEEEEEEe
Q psy7036         198 SNATISLNFD  207 (254)
Q Consensus       198 ~~~~~~~~v~  207 (254)
                      ...++.|.|+
T Consensus        80 ~~~~~~l~V~   89 (89)
T d1gl4b_          80 DQGTATLHVQ   89 (89)
T ss_dssp             EEEEEEEEEC
T ss_pred             EEEEEEEEEC
Confidence            8888887763

>d2nxyb2 b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD4 C2-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=2e-15  Score=88.76  Aligned_cols=73  Identities=12%  Similarity=0.190  Sum_probs=61.6

Q ss_pred             eeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcceEE
Q psy7036         122 RQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNAT  201 (254)
Q Consensus       122 ~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~  201 (254)
                      ..+.+|+.++|.|.+.|.|.|.+.|++++..+...         +.     .|.|.++..+|+|.|+|.|.|..|.....
T Consensus         9 ~~v~~G~~~~L~C~~~g~p~P~i~W~~~~~~~~~~---------~~-----~l~i~~v~~~DsG~Y~C~a~N~~g~~~~~   74 (84)
T d2nxyb2           9 THLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQG---------GK-----TLSVSQLELQDSGTWTCTVLQNQKKVEFK   74 (84)
T ss_dssp             SCEETTCCEEEEEECCTTCCCEEEEECTTCCEEEE---------SS-----EEEESSCCGGGCEEEEEEEEETTEEEEEE
T ss_pred             eEEECCCeEEEEEEeEcCCchheEEEeecccceee---------ee-----eeeeeecccccccEEEEEEEeCCCEEEEE
Confidence            35778999999999999999999999976543211         11     79999999999999999999999998888


Q ss_pred             EEEEEec
Q psy7036         202 ISLNFDS  208 (254)
Q Consensus       202 ~~~~v~~  208 (254)
                      +.|.|..
T Consensus        75 ~~v~V~~   81 (84)
T d2nxyb2          75 IDIVVLA   81 (84)
T ss_dssp             EEECEEC
T ss_pred             EEEEEEe
Confidence            8888764

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.60  E-value=9.1e-16  Score=93.01  Aligned_cols=89  Identities=24%  Similarity=0.440  Sum_probs=66.3

Q ss_pred             CCccccCCCeeeecC---CCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEE
Q psy7036         112 APTFLKKPSIRQEDD---GKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYK  188 (254)
Q Consensus       112 ~~~~~~~~~~~~~~~---g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~  188 (254)
                      +|.+...+....+..   ++.+.|.|.+.|.|.|.+.|++++..+.............     ..|.|..+..+|.|.|+
T Consensus         4 ~P~f~~~P~~~~~~~g~~~~~v~l~C~~~g~P~p~v~W~~ng~~i~~~~~~~~~~~~~-----~~l~i~~~~~~d~G~Y~   78 (97)
T d1cs6a1           4 GPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAG-----DLVISNPVKAKDAGSYQ   78 (97)
T ss_dssp             EEEEEECCCCEEEETTCSCCEEEECCEEEEESCCEEEEEETTEECCCSTTSSEEEETT-----EEEEESCCHHHHCEEEE
T ss_pred             CCEEEEeCCCEEEECccCCCeEEEEEEEEEeCCCEEEEEEeeeeccCCCCceEEeeee-----eEEEEecccccCCEEEE
Confidence            344444455554444   4789999999999999999999999987665555544333     26888889999999999


Q ss_pred             EEEEcCCCcc-eEEEEEE
Q psy7036         189 VTAKNELGES-NATISLN  205 (254)
Q Consensus       189 C~~~~~~~~~-~~~~~~~  205 (254)
                      |.|.|..|.. +..+.|.
T Consensus        79 C~a~N~~G~~~S~~a~L~   96 (97)
T d1cs6a1          79 CVATNARGTVVSREASLR   96 (97)
T ss_dssp             EEEEETTEEEECCCEEEE
T ss_pred             EEEEECCCEEEEEEEEEe
Confidence            9999999975 3345443

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.60  E-value=5.3e-16  Score=96.51  Aligned_cols=87  Identities=18%  Similarity=0.300  Sum_probs=60.5

Q ss_pred             eeecCCCeEEEEEEEe-eCCCCceEEEeCCEEeeeCCcceEEEeecC---CcceEEEEEEeccCCCCCeEEEEEEEcCCC
Q psy7036          18 RQEDEGNRLIFECQLL-CNPKPDIVWFRGETQLSEDTRTVMKTTPIG---TNKYLVALELDDVIETDAGLYKVKAKNKMG   93 (254)
Q Consensus        18 ~~v~~g~~v~l~C~~~-~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~   93 (254)
                      ..+.+|++++|.|.+. |.|.+.++|++++..+..............   .....+.|.|.+++..|+|.|+|.|.|..|
T Consensus        12 ~~v~~G~~v~L~C~~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~N~~G   91 (110)
T d1f97a2          12 SSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYG   91 (110)
T ss_dssp             SEEETTSCEEEEEECSCCBSCCEEEEEETTEESBC-----CBSCSSSCEEECTTTCCEEESSCCGGGCEEEEEEEECSSS
T ss_pred             CEEecCCeEEEEEEeecCCCCCEEEEEeCCeEecCCCceeEEeecCceEEEeecccceEECCCCccCCEEEEEEEEECCC
Confidence            3578999999999985 789999999999987754332211100000   001122689999999999999999999999


Q ss_pred             ceEE--EEEEEEe
Q psy7036          94 EVAA--SINLNFS  104 (254)
Q Consensus        94 ~~~~--~~~l~v~  104 (254)
                      ....  .+.|.|.
T Consensus        92 ~~~~s~~v~l~V~  104 (110)
T d1f97a2          92 TAMRSEAAHMDAV  104 (110)
T ss_dssp             CCEECCCEEEEEE
T ss_pred             cEEEEEEEEEEEE
Confidence            7654  4556654

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=2.2e-16  Score=99.18  Aligned_cols=102  Identities=18%  Similarity=0.296  Sum_probs=77.3

Q ss_pred             CCCCCCCCeeEeCCCceeecCCCeEEEEEEEeeC-CCCceEEEeCCEEeeeCCcceEEEee-cCCcceEEEEEEeccCCC
Q psy7036           2 GIAEDFAPSFTQKPQLRQEDEGNRLIFECQLLCN-PKPDIVWFRGETQLSEDTRTVMKTTP-IGTNKYLVALELDDVIET   79 (254)
Q Consensus         2 ~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~-~~~~v~W~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~i~~~~~~   79 (254)
                      ++.+..+|.|.. +....+.+|+++.|.|.+.+. |.+.+.|++++..+......++.... .......+.|.|.++...
T Consensus         1 TL~V~~Pp~i~~-~~~~~~~~G~~~~l~C~v~~~~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~   79 (115)
T d2crya1           1 TLTVNGPPIISS-TQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVISTLTISNIVRA   79 (115)
T ss_dssp             CCCCCSSCCEEE-ECCCCCCTTSCCCCCEEECCSSCCSEEEEESSSCEECSEEETTEEEEEEEETTEEEEEEECTTCCHH
T ss_pred             CeEEecCCEEec-CCCEEEecCCEEEEEEEeecCCCeeEEEEeeeeeeEeeeeeeeEeeeeeccccCcEEEEEEeccchh
Confidence            466777888764 556778999999999999885 56679999999887654333222221 122234457999999999


Q ss_pred             C-CeEEEEEEEcCCCceEEEEEEEEe
Q psy7036          80 D-AGLYKVKAKNKMGEVAASINLNFS  104 (254)
Q Consensus        80 d-~G~Y~C~~~~~~~~~~~~~~l~v~  104 (254)
                      | +|.|+|.|.|..|.....+.|.|.
T Consensus        80 D~~G~Y~C~A~N~~G~~~~~~~L~V~  105 (115)
T d2crya1          80 DFQTIYNCTAWNSFGSDTEIIRLKEQ  105 (115)
T ss_dssp             HHHSCEEEEEECSSCEEEEEECCCCS
T ss_pred             cCCeEEEEEEEECCCeEEEEEEEEEE
Confidence            9 699999999999999888888875

>d2fcba1 b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=99.59  E-value=1.7e-15  Score=89.17  Aligned_cols=79  Identities=15%  Similarity=0.270  Sum_probs=62.9

Q ss_pred             CCeeEeCCCceeecCCCeEEEEEEEeeCCCC-ceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEE
Q psy7036           8 APSFTQKPQLRQEDEGNRLIFECQLLCNPKP-DIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKV   86 (254)
Q Consensus         8 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C   86 (254)
                      .|.++..|....+.+|++++|+|.+.+.+.+ .+.|++||..+.....               .|.|.+++..|+|.|+|
T Consensus         4 kp~i~~~P~~~~v~~G~~v~L~C~~~~~~~~~~~~w~~~g~~~~~~~~---------------~l~i~~v~~~dsG~Y~C   68 (85)
T d2fcba1           4 KAVLKLEPQWINVLQEDSVTLTCRGTHSPESDSIQWFHNGNLIPTHTQ---------------PSYRFKANNNDSGEYTC   68 (85)
T ss_dssp             BCEEEEESCCSEEETTCEEEEEEECSSCCCTTCCEEEETTEECTTCCS---------------SEEEEECCGGGCEEEEE
T ss_pred             CCEEEECCCCeEEcCCCeEEEEEEEeeccceeEEEeeccccccccccc---------------ceEEeeccccCCcEEEE
Confidence            4678888888889999999999999887655 6899999988754322               58999999999999999


Q ss_pred             EEEcCCCceEEEEEEEE
Q psy7036          87 KAKNKMGEVAASINLNF  103 (254)
Q Consensus        87 ~~~~~~~~~~~~~~l~v  103 (254)
                      .+.|..++.  .+.|.|
T Consensus        69 ~a~ns~~S~--~v~l~V   83 (85)
T d2fcba1          69 QTGQTSLSD--PVHLTV   83 (85)
T ss_dssp             ECTTSBCCC--CEEEEE
T ss_pred             ECCCCcccc--cEEEEE
Confidence            998765543  344444

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

Probab=99.59  E-value=1.1e-14  Score=90.32  Aligned_cols=95  Identities=24%  Similarity=0.344  Sum_probs=66.9

Q ss_pred             CCccccC-CCeeeecCCCeEEEEEEEeeCCCCeEEEEECCEeccc----CCcceEEE-----cCCCCceeeEEEEccCCC
Q psy7036         112 APTFLKK-PSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKE----DKRHKFSI-----DKDGHSYFASLEIIDVTI  181 (254)
Q Consensus       112 ~~~~~~~-~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~----~~~~~~~~-----~~~~~~~~~~l~i~~~~~  181 (254)
                      .|.+... +....+..|+.+.|.|.+.+.|.|.+.|+|++.....    ........     ........+.|.|.++..
T Consensus         4 ~P~i~~~~P~~~tv~~G~~v~l~C~v~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~   83 (109)
T d2fdbp2           4 RPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTF   83 (109)
T ss_dssp             CCEECTTCSCCEEECTTCCEEEEEEEECSSCCEEEEEEEC-------------CEEEECCEEEEETTEEEEEEEECSCCG
T ss_pred             CCEEcCCCCCCEEEecCCcEEEEEEEEEcCCCeEEEEecCccCCceeccCCceeEeecccceeEEecCCcEEEEECCCCH
Confidence            3444432 5667889999999999999999999999997643211    11111111     011122346899999999


Q ss_pred             CCceeEEEEEEcCCCcceEEEEEEE
Q psy7036         182 EDAGKYKVTAKNELGESNATISLNF  206 (254)
Q Consensus       182 ~d~G~y~C~~~~~~~~~~~~~~~~v  206 (254)
                      +|.|.|+|.|.|..|....++.|.|
T Consensus        84 ~D~G~Y~C~a~N~~G~~~~~~~L~V  108 (109)
T d2fdbp2          84 EDAGEYTCLAGNSIGISFHSAWLTV  108 (109)
T ss_dssp             GGCEEEEEEEECSSCEEEEEEEEEE
T ss_pred             HHCeEEEEEEEECCCEEEEEEEEEE
Confidence            9999999999999999988888876

>d1f2qa1 b.1.1.4 (A:4-85) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=1.5e-15  Score=88.79  Aligned_cols=79  Identities=16%  Similarity=0.275  Sum_probs=61.2

Q ss_pred             CCeeEeCCCceeecCCCeEEEEEEEeeCCCC-ceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEE
Q psy7036           8 APSFTQKPQLRQEDEGNRLIFECQLLCNPKP-DIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKV   86 (254)
Q Consensus         8 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C   86 (254)
                      .|.|...|....+.+|++++|+|.+.+.+.+ .+.|++++..+.....               .|.|.+++..|+|.|+|
T Consensus         1 KP~It~~P~~~~v~~G~~v~L~C~~~~~~~~~~~~~~~~~~~~~~~~~---------------~l~i~~v~~~d~G~Y~C   65 (82)
T d1f2qa1           1 KPKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEETNS---------------SLNIVNAKFEDSGEYKC   65 (82)
T ss_dssp             CCCCEEESSCSEEETTCCEEEECCTTCC----CCEEEETTEECSCCSS---------------EEEECSCCGGGCEEEEE
T ss_pred             CCEEEEcCCCeEEeCCCeEEEEEEEeeeeeecceeeeeeeeeeecccc---------------eeEECCCChhhCCcEEE
Confidence            4888888988889999999999999887766 4678899887754322               69999999999999999


Q ss_pred             EEEcCCCceEEEEEEEE
Q psy7036          87 KAKNKMGEVAASINLNF  103 (254)
Q Consensus        87 ~~~~~~~~~~~~~~l~v  103 (254)
                      .+.+.....  .+.|.|
T Consensus        66 ~a~~s~~S~--~v~l~V   80 (82)
T d1f2qa1          66 QHQQVNESE--PVYLEV   80 (82)
T ss_dssp             ECTTSSCCC--CEEEEE
T ss_pred             EecCCCCcc--cEEEEE
Confidence            998765543  345555

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=9.3e-17  Score=98.98  Aligned_cols=96  Identities=20%  Similarity=0.313  Sum_probs=67.8

Q ss_pred             CCeeEeCCCceeecCCCeEEEEEEE-eeCCCCceEEEeCCEEeeeCCcceEEEeec--CCcceEEEEEEeccCCCCCeEE
Q psy7036           8 APSFTQKPQLRQEDEGNRLIFECQL-LCNPKPDIVWFRGETQLSEDTRTVMKTTPI--GTNKYLVALELDDVIETDAGLY   84 (254)
Q Consensus         8 ~p~~~~~~~~~~v~~g~~v~l~C~~-~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~i~~~~~~d~G~Y   84 (254)
                      ||.+........+.+|++++|.|.+ .|.|.+.+.|+|++..+....+........  ......+.|.|.+++..|+|.|
T Consensus         2 PP~~p~~~~~~~v~~G~~v~l~C~~~~g~p~p~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y   81 (104)
T d1nbqa2           2 PPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEY   81 (104)
T ss_dssp             CCCCCCCCCBSEEETTSCEEECCCCCSCBSCCEEEEEETTCCCCSCSSSSSSCTTCCCCCCTTTCCEEESSCCGGGCCCE
T ss_pred             CCcccccCCCCEEecCCcEEEEEEeecCCCCCEEEEEECCEEccCCCceeEEeeCCcEEEeecccceEECCCCcccCcEE
Confidence            4555444455678899999999998 478999999999998875543322111111  0111223789999999999999


Q ss_pred             EEEEEcCCCceEEEEEEEE
Q psy7036          85 KVKAKNKMGEVAASINLNF  103 (254)
Q Consensus        85 ~C~~~~~~~~~~~~~~l~v  103 (254)
                      +|.+.|..|....+..++|
T Consensus        82 ~C~a~N~~G~~~~s~~v~v  100 (104)
T d1nbqa2          82 SCEARNGYGTPMTSNAVRM  100 (104)
T ss_dssp             EEEEECSSSCCEECCCBCC
T ss_pred             EEEEEECCCceEEEEEEEE
Confidence            9999999998766544443

>d1vcaa2 b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=6.9e-15  Score=87.69  Aligned_cols=80  Identities=15%  Similarity=0.168  Sum_probs=64.0

Q ss_pred             eeeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcceE
Q psy7036         121 IRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNA  200 (254)
Q Consensus       121 ~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~  200 (254)
                      ...+..|+.+.|.|.+.|.|.|.+.|++++..+....   .....    ..+.|.|.+++.+|+|.|+|.|.|..|..+.
T Consensus        10 ~~~~~~G~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~---~~~~~----~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~~   82 (90)
T d1vcaa2          10 RYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNGK---VTNEG----TTSTLTMNPVSFGNEHSYLCTATCESRKLEK   82 (90)
T ss_dssp             EEEEETTSCEEEEEEEESCSSCEEEEEETTCCCCSSE---EEEET----TEEEEEESSCCGGGCSEEEEEEEETTEEEEE
T ss_pred             cEEEECCCEEEEEEeccCCCCceEEEEecCccceeee---eeeec----CCcEEEEecccccccceEEEEEEeCCCEEEE
Confidence            3456689999999999999999999999876653221   11111    1238999999999999999999999999999


Q ss_pred             EEEEEEe
Q psy7036         201 TISLNFD  207 (254)
Q Consensus       201 ~~~~~v~  207 (254)
                      ++.|.|.
T Consensus        83 ~~~v~V~   89 (90)
T d1vcaa2          83 GIQVEIY   89 (90)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEE
Confidence            9888875

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=1.3e-14  Score=89.07  Aligned_cols=92  Identities=18%  Similarity=0.252  Sum_probs=67.9

Q ss_pred             ccCCCeeeecCCCeEEEEEEEeeCC-CCeEEEEECCEecccC-CcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEc
Q psy7036         116 LKKPSIRQEDDGKRLLFECRIQADP-APTVIWSHSGVQVKED-KRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKN  193 (254)
Q Consensus       116 ~~~~~~~~~~~g~~~~l~C~~~~~~-~~~~~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~  193 (254)
                      ...+....+..|+.+.|.|.+.+.| .|.+.|+|++..+... .........++......|.|.++..+|.|.|+|.|.|
T Consensus         7 i~~~~~~~v~~G~~v~L~C~v~g~p~~P~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N   86 (104)
T d2aw2a1           7 IKRQSEHSILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNISFFILHFEPVLPNDNGSYRCSANF   86 (104)
T ss_dssp             CCTTEEEEEETTSCEEEEEEEECSSSCCEEEEEEECSSCEEECCSSCEEEEECSSCEEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             EecCCeEEEeCCCeEEEEEEEEeeCCCCEEEEEecCcccccccceeeeeEEecCCceEEEEEEccccHHHCCeEEEEEEc
Confidence            3445567788999999999999998 5899999988765422 2222222233333445799999999999999999999


Q ss_pred             CCCcc-eEEEEEEEe
Q psy7036         194 ELGES-NATISLNFD  207 (254)
Q Consensus       194 ~~~~~-~~~~~~~v~  207 (254)
                      ..|.. ..++.|.|.
T Consensus        87 ~~G~~~s~~~~l~V~  101 (104)
T d2aw2a1          87 QSNLIESHSTTLYVT  101 (104)
T ss_dssp             TTEEEECCCEEEEEE
T ss_pred             CCCeEEEEEEEEEEE
Confidence            99875 446777664

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

Probab=99.57  E-value=3.3e-16  Score=93.10  Aligned_cols=85  Identities=16%  Similarity=0.091  Sum_probs=68.3

Q ss_pred             eeEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEE
Q psy7036          10 SFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAK   89 (254)
Q Consensus        10 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~   89 (254)
                      .|..++++..+.+|+++.|.|.+. .|.+.+.|+|||..+....++.+....     ..+.|.|.+++..|+|.|+|.+.
T Consensus         3 ~i~~~l~d~~v~~G~~~~~~c~vs-~p~~~v~W~k~g~~i~~~~~~~~~~~~-----~~~~L~I~~~~~~D~G~Y~c~a~   76 (89)
T d1tiua_           3 EVEKPLYGVEVFVGETAHFEIELS-EPDVHGQWKLKGQPLTASPDCEIIEDG-----KKHILILHNCQLGMTGEVSFQAA   76 (89)
T ss_dssp             CCSBCCCCEEEETTSCCCEEEBCS-SSSCCCBCCSSSCCCCSSSSCEEEECS-----SCEEEECCSCCSCCCSEECCBCS
T ss_pred             EEEcCCcCEEEeCCCcEEEEEEEC-CCCcEEEEEEeeeecccceeEEEEeec-----eeEEEEEcCCChhcCEEEEEEEC
Confidence            356678889999999999999984 788899999999999888777665432     23489999999999999999986


Q ss_pred             cCCCceEEEEEEEEe
Q psy7036          90 NKMGEVAASINLNFS  104 (254)
Q Consensus        90 ~~~~~~~~~~~l~v~  104 (254)
                      |..    .++.|.|.
T Consensus        77 n~~----~sa~l~V~   87 (89)
T d1tiua_          77 NAK----SAANLKVK   87 (89)
T ss_dssp             SCB----CCEEEEEE
T ss_pred             ceE----EEEEEEEE
Confidence            643    34566664

>d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.57  E-value=1.2e-15  Score=93.68  Aligned_cols=85  Identities=16%  Similarity=0.191  Sum_probs=63.1

Q ss_pred             CeeEeCC-CceeecCCCeEEEEEEE-eeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEE
Q psy7036           9 PSFTQKP-QLRQEDEGNRLIFECQL-LCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKV   86 (254)
Q Consensus         9 p~~~~~~-~~~~v~~g~~v~l~C~~-~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C   86 (254)
                      +.|...+ +.+.+.+|+++.|.|.+ .+.|.+.+.|+|++..+......+........     .|.|.+++.+|+|.|+|
T Consensus         4 ~~F~~~~~~~v~v~eG~~~~l~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~-----~L~I~~v~~~D~G~Y~C   78 (105)
T d1cs6a2           4 QEFSAEERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTG-----NLYIAKTEASDLGNYSC   78 (105)
T ss_dssp             CCCCSSCCCCEEEETTSCEEECCCCCSEESCCEEEEEESSTTCBCCCCSSEEECTTTC-----CEEESSCCGGGCEEEEE
T ss_pred             CcccCCCCCCEEEeCCCeEEEEEEccCCCCCCEEEEEEeeccccccccceeeeecCCC-----EEeecccccccCcEEEE
Confidence            3344443 55789999999999997 67899999999998766543333322222211     69999999999999999


Q ss_pred             EEEcCCCceEEE
Q psy7036          87 KAKNKMGEVAAS   98 (254)
Q Consensus        87 ~~~~~~~~~~~~   98 (254)
                      .+.|..|.....
T Consensus        79 ~a~N~~g~~~~~   90 (105)
T d1cs6a2          79 FATSHIDFITKS   90 (105)
T ss_dssp             EEEEEETTEEEE
T ss_pred             EEEECCCCEEEE
Confidence            999988875543

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=3.6e-16  Score=93.83  Aligned_cols=88  Identities=17%  Similarity=0.285  Sum_probs=66.9

Q ss_pred             CccccCCCeeeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCce-eEEEEE
Q psy7036         113 PTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAG-KYKVTA  191 (254)
Q Consensus       113 ~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G-~y~C~~  191 (254)
                      |.+...+....+.+|+.+.|.|.+.|.|.|.+.|++++..+.......      .......|.|.++..+|.| .|+|.|
T Consensus         3 P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~------~~~~~~~L~i~~~~~~d~G~~Y~C~a   76 (92)
T d2ifga1           3 PTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKS------GGLPSLGLTLANVTSDLNRKNVTCWA   76 (92)
T ss_dssp             CEEEEECCSSCCBTTCCEEEEEEEECSSCCCCCEEESCCCSSEEECCC------CCSSEEEEEEESCCSTTTTCCEEECC
T ss_pred             CEEEEeCCCEEEeCCCEEEEeeeccCCCCcEEEEEECCceeeeeeeee------eeccceeEEEccccccccceEEEEEE
Confidence            334444455678899999999999999999999999987664322111      1112247999999999999 699999


Q ss_pred             EcCCCcceEEEEEEE
Q psy7036         192 KNELGESNATISLNF  206 (254)
Q Consensus       192 ~~~~~~~~~~~~~~v  206 (254)
                      .|..|....++.|.|
T Consensus        77 ~N~~G~~~~s~~l~V   91 (92)
T d2ifga1          77 ENDVGRAEVSVQVNV   91 (92)
T ss_dssp             EETTEECCEEECCCC
T ss_pred             EcCCCEEEEEEEEEE
Confidence            999999888776654

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=2.1e-14  Score=88.31  Aligned_cols=82  Identities=20%  Similarity=0.295  Sum_probs=64.3

Q ss_pred             CCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCC---CCceeeEEEEccCCCCCceeEEEEEEcCCCcceEEEE
Q psy7036         127 GKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKD---GHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATIS  203 (254)
Q Consensus       127 g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~  203 (254)
                      +....+.|.+.|.|.|.+.|++++..+.............   .....+.|.|.++..+|.|.|+|.|.|..|....++.
T Consensus        15 ~~~~ci~~~v~G~P~P~v~W~~ng~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~A~N~~G~~~~~i~   94 (107)
T d1he7a_          15 MHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIM   94 (107)
T ss_dssp             CCEEEEEEEECCSSCCEEEEEETTEECCCCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEEEEEETTEEEEEEEE
T ss_pred             EEEEEEEEEEEEecCCeEEEEEeeeEccCccceeeeeeeeeeeeeccceEEEECcccHHHCcEEEEEEEeCCCEEEEEEE
Confidence            3444466689999999999999999987666544443322   2234568999999999999999999999999988888


Q ss_pred             EEEec
Q psy7036         204 LNFDS  208 (254)
Q Consensus       204 ~~v~~  208 (254)
                      |.|..
T Consensus        95 v~v~~   99 (107)
T d1he7a_          95 AAFMD   99 (107)
T ss_dssp             ECCCS
T ss_pred             EEEEc
Confidence            87764

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=1.6e-14  Score=88.01  Aligned_cols=90  Identities=16%  Similarity=0.210  Sum_probs=70.6

Q ss_pred             CCCeeEeCCCceeecCCCeEEEEEEEee-CCCC--ceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeE
Q psy7036           7 FAPSFTQKPQLRQEDEGNRLIFECQLLC-NPKP--DIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGL   83 (254)
Q Consensus         7 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~-~~~~--~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~   83 (254)
                      .+|.+...+....+.+|+.++|+|.+.| .|.+  .++|++++..+.....        ......+.|.|...+.+|.|.
T Consensus         3 ~P~~v~i~p~~~~v~~G~~~~L~C~v~g~~P~p~~~v~W~~~~~~l~~~~~--------~~~~~~s~l~i~~~~~dd~g~   74 (103)
T d1iama1           3 TPERVELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREPA--------VGEPAEVTTTVLVRRDHHGAQ   74 (103)
T ss_dssp             CCSEEEECCCCSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEEC--------CTTTEEEEEEEECCSSCSSCE
T ss_pred             CCCceEEeCCCceEeCCCEEEEEEEecCCCCCCceEEEEcccccccccccc--------ccccceEEEEEeeehhHCCCE
Confidence            4678888888888999999999999986 4554  5789999998864322        122344589999999999999


Q ss_pred             EEEEEEcCCCceEEEEEEEEe
Q psy7036          84 YKVKAKNKMGEVAASINLNFS  104 (254)
Q Consensus        84 Y~C~~~~~~~~~~~~~~l~v~  104 (254)
                      |+|+|.|..|.......+.+.
T Consensus        75 ytC~A~n~~g~~~~~~~~~~s   95 (103)
T d1iama1          75 FSCRTELDLRPQGLELFENTS   95 (103)
T ss_dssp             EEEEEEEECGGGTSCEEEEEC
T ss_pred             EEEEEEeCCCCccCeEeeeEc
Confidence            999999998876666666653

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=2.1e-15  Score=91.66  Aligned_cols=85  Identities=14%  Similarity=0.201  Sum_probs=66.9

Q ss_pred             CCCceeecCCCeEEEEEEEe-eCCCCceEEEeCCEEeeeC--CcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEc
Q psy7036          14 KPQLRQEDEGNRLIFECQLL-CNPKPDIVWFRGETQLSED--TRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKN   90 (254)
Q Consensus        14 ~~~~~~v~~g~~v~l~C~~~-~~~~~~v~W~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~   90 (254)
                      .|....+.+|+.+.|.|.+. +.+.+.+.|||+|..+...  ...++..  .+.     .|.|.+++.+|+|.|+|.+.|
T Consensus         8 ~~~~~~~~~~e~~~l~C~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~--~~~-----~L~I~~v~~~D~G~Y~C~a~N   80 (101)
T d1iray1           8 EKIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQ--HKE-----KLWFVPAKVEDSGHYYCVVRN   80 (101)
T ss_dssp             CCCCEEEETTSCEEECCCCCGGGCSSEEEEECSSTTSBCCCCTTSSEEE--ETT-----EEEETTCCGGGCEEEEEEEEE
T ss_pred             CCcEEEEeCCCeEEEEeeCCCCCCCceEEEEECCcccccccccceEEec--cCC-----EEEeccceecCCEEEEEEEEC
Confidence            45556778999999999985 5789999999998654322  2222222  111     799999999999999999999


Q ss_pred             CCCceEEEEEEEEec
Q psy7036          91 KMGEVAASINLNFSR  105 (254)
Q Consensus        91 ~~~~~~~~~~l~v~~  105 (254)
                      ..|.....+.|.|.+
T Consensus        81 ~~g~~~~~~~L~V~~   95 (101)
T d1iray1          81 SSYCLRIKISAKFVE   95 (101)
T ss_dssp             TTEEEEEEEEEEEEC
T ss_pred             CCCeEEEEEEEEEEe
Confidence            999999999999874

>d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Mucosal addressin cell adhesion molecule-1 (MADCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=1.1e-14  Score=86.51  Aligned_cols=78  Identities=17%  Similarity=0.204  Sum_probs=61.6

Q ss_pred             CeeeecCCCeEEEEEEEe-eCCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcc
Q psy7036         120 SIRQEDDGKRLLFECRIQ-ADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGES  198 (254)
Q Consensus       120 ~~~~~~~g~~~~l~C~~~-~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~  198 (254)
                      ....+..|+++.|.|.+. +.|.+.+.|++.+..+...    . ....    .+.|.|.+++.+|+|.|+|.|.|..+..
T Consensus        11 ~~~~~~~G~~~~l~C~~~~g~p~p~v~W~~~~~~~~~~----~-~~~~----~~~L~i~~v~~~D~G~Y~C~Asn~~g~~   81 (90)
T d1gsma1          11 PVVAVALGASRQLTCRLACADRGASVQWRGLDTSLGAV----Q-SDTG----RSVLTVRNASLSAAGTRVCVGSCGGRTF   81 (90)
T ss_dssp             SEEEEETTCCEEEEEEECCSSTTCEEEEESSTTTTCCE----E-EESS----EEEEEECSCCGGGCEEEEEEEEETTEEE
T ss_pred             CeEEEEeCCcEEEEEEecCCCCccEEEEEEeeeeeeee----e-ccCc----eeeEEcCccChhhCCcEEEEEEeCCCcE
Confidence            456778999999999875 7889999999877654211    1 1111    1389999999999999999999999988


Q ss_pred             eEEEEEEE
Q psy7036         199 NATISLNF  206 (254)
Q Consensus       199 ~~~~~~~v  206 (254)
                      +.++.|.|
T Consensus        82 ~~s~~l~V   89 (90)
T d1gsma1          82 QHTVQLLV   89 (90)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEEE
Confidence            88888876

>d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.54  E-value=5.8e-14  Score=84.87  Aligned_cols=85  Identities=25%  Similarity=0.447  Sum_probs=62.1

Q ss_pred             CeeeecCCCeEEEEEEEeeCCC-CeEEEEEC-CEecccC-CcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCC
Q psy7036         120 SIRQEDDGKRLLFECRIQADPA-PTVIWSHS-GVQVKED-KRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELG  196 (254)
Q Consensus       120 ~~~~~~~g~~~~l~C~~~~~~~-~~~~W~~~-~~~~~~~-~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~  196 (254)
                      ....+..|+.+.|.|.+.+.|+ +.+.|+++ +..+... .+..+.....+   .+.|.|.+++.+|+|.|+|.|.|..|
T Consensus         8 ~~~~v~~G~~~~l~C~v~g~p~~~~v~W~~~~g~~~~~~~~~~~~~~~~~~---~~~L~I~~~~~~D~G~Y~C~a~N~~G   84 (97)
T d1epfa1           8 SQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDD---SSTLTIYNANIDDAGIYKCVVTAEDG   84 (97)
T ss_dssp             SSEEEETTCCEEEEEEECCCSCCCEEEEECTTSCEECCBSSSEEEEEEETT---EEEEEECSCCGGGCEEEEEEEEETTT
T ss_pred             CCEEEccCCcEEEEEEEEeccCCCEEEEEEeeeeeeeeccccEEEEeecCc---ceEEEcccCchhhceEEEEEEEeCCC
Confidence            4456788999999999999875 69999994 4444332 22233222222   24799999999999999999999998


Q ss_pred             cc-eEEEEEEEe
Q psy7036         197 ES-NATISLNFD  207 (254)
Q Consensus       197 ~~-~~~~~~~v~  207 (254)
                      .. ..++.|.|.
T Consensus        85 ~~~~~tv~l~V~   96 (97)
T d1epfa1          85 TQSEATVNVKIF   96 (97)
T ss_dssp             EEEEEEEEEEEE
T ss_pred             cEEEEEEEEEEE
Confidence            64 456777664

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.52  E-value=1.9e-14  Score=89.34  Aligned_cols=86  Identities=19%  Similarity=0.272  Sum_probs=60.7

Q ss_pred             eecCCCeEEEEEEEe-eCCCCeEEEEECCEecccCCcceEEEcCCCC----ceeeEEEEccCCCCCceeEEEEEEcCCCc
Q psy7036         123 QEDDGKRLLFECRIQ-ADPAPTVIWSHSGVQVKEDKRHKFSIDKDGH----SYFASLEIIDVTIEDAGKYKVTAKNELGE  197 (254)
Q Consensus       123 ~~~~g~~~~l~C~~~-~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~i~~~~~~d~G~y~C~~~~~~~~  197 (254)
                      .+..|+.+.|.|.+. +.|.+.+.|++++..+............+..    ...+.|.|.+++.+|+|.|+|.|.|..|.
T Consensus        13 ~v~~G~~v~L~C~~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~N~~G~   92 (110)
T d1f97a2          13 SVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGT   92 (110)
T ss_dssp             EEETTSCEEEEEECSCCBSCCEEEEEETTEESBC-----CBSCSSSCEEECTTTCCEEESSCCGGGCEEEEEEEECSSSC
T ss_pred             EEecCCeEEEEEEeecCCCCCEEEEEeCCeEecCCCceeEEeecCceEEEeecccceEECCCCccCCEEEEEEEEECCCc
Confidence            567899999999974 7899999999999877544332211111110    11237999999999999999999999997


Q ss_pred             ceE--EEEEEEec
Q psy7036         198 SNA--TISLNFDS  208 (254)
Q Consensus       198 ~~~--~~~~~v~~  208 (254)
                      ...  .+++.|..
T Consensus        93 ~~~s~~v~l~V~~  105 (110)
T d1f97a2          93 AMRSEAAHMDAVE  105 (110)
T ss_dssp             CEECCCEEEEEES
T ss_pred             EEEEEEEEEEEEe
Confidence            754  56666653

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=2.9e-15  Score=92.14  Aligned_cols=87  Identities=15%  Similarity=0.337  Sum_probs=63.5

Q ss_pred             CeeeecCCCeEEEEEEE-eeCCCCeEEEEECCEecccCCcceEEEcCCC---CceeeEEEEccCCCCCceeEEEEEEcCC
Q psy7036         120 SIRQEDDGKRLLFECRI-QADPAPTVIWSHSGVQVKEDKRHKFSIDKDG---HSYFASLEIIDVTIEDAGKYKVTAKNEL  195 (254)
Q Consensus       120 ~~~~~~~g~~~~l~C~~-~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~i~~~~~~d~G~y~C~~~~~~  195 (254)
                      ....+..|+.+.|.|.+ .+.|.+.+.|++++..+..............   ....+.|.|.++..+|.|.|+|.|.|..
T Consensus        10 ~~~~v~~G~~v~l~C~~~~g~p~p~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~N~~   89 (104)
T d1nbqa2          10 IPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGY   89 (104)
T ss_dssp             CBSEEETTSCEEECCCCCSCBSCCEEEEEETTCCCCSCSSSSSSCTTCCCCCCTTTCCEEESSCCGGGCCCEEEEEECSS
T ss_pred             CCCEEecCCcEEEEEEeecCCCCCEEEEEECCEEccCCCceeEEeeCCcEEEeecccceEECCCCcccCcEEEEEEEECC
Confidence            34467789999999997 4799999999999988765443322222111   1122479999999999999999999999


Q ss_pred             CcceEEEEEEE
Q psy7036         196 GESNATISLNF  206 (254)
Q Consensus       196 ~~~~~~~~~~v  206 (254)
                      |....+..+.|
T Consensus        90 G~~~~s~~v~v  100 (104)
T d1nbqa2          90 GTPMTSNAVRM  100 (104)
T ss_dssp             SCCEECCCBCC
T ss_pred             CceEEEEEEEE
Confidence            98765544433

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=1.4e-13  Score=84.80  Aligned_cols=85  Identities=19%  Similarity=0.282  Sum_probs=66.0

Q ss_pred             eeeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEE----EcC----CCCceeeEEEEccCCCCCce-eEEEEE
Q psy7036         121 IRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFS----IDK----DGHSYFASLEIIDVTIEDAG-KYKVTA  191 (254)
Q Consensus       121 ~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~----~~~----~~~~~~~~l~i~~~~~~d~G-~y~C~~  191 (254)
                      ...+..|+.+.|.|.+.+.|.+.+.|++++..+.........    ...    +.....+.|.|.+++.+|.| .|+|.|
T Consensus        11 ~i~v~~G~~v~l~C~v~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~g~~Y~C~A   90 (107)
T d1iray3          11 TMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFA   90 (107)
T ss_dssp             EEECCTTCCEEEEEEEEECTTCEEEEEETTEECCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCCGGGGSSCEEEEE
T ss_pred             EEEEeCCCEEEEEEEeccCCCCeEEEEECCcccccccceeeeeeeeeccceeeecccceEEEEEeecchHHCCcEEEEEE
Confidence            456778999999999999999999999999887654432211    111    11234568999999999999 599999


Q ss_pred             EcCCCcceEEEEEE
Q psy7036         192 KNELGESNATISLN  205 (254)
Q Consensus       192 ~~~~~~~~~~~~~~  205 (254)
                      .|..|.....+.|.
T Consensus        91 ~N~~G~~~~~i~L~  104 (107)
T d1iray3          91 KNTHGIDAAYIQLI  104 (107)
T ss_dssp             ECSSCEEEEEEEEE
T ss_pred             EeCCCeEEEEEEEE
Confidence            99999888877664

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=4.8e-14  Score=90.29  Aligned_cols=88  Identities=26%  Similarity=0.419  Sum_probs=66.8

Q ss_pred             CCCeeeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcce---------------------------EEEcCCCCce
Q psy7036         118 KPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHK---------------------------FSIDKDGHSY  170 (254)
Q Consensus       118 ~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~---------------------------~~~~~~~~~~  170 (254)
                      .+..+.+..|+.++|.|.+.|.|.|.+.|++++..+.......                           +....  ...
T Consensus        15 ~~~~v~v~~G~~v~L~C~v~G~P~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~   92 (130)
T d1gxea_          15 IPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLCETEGRVRVET--TKD   92 (130)
T ss_dssp             CCCEEEESSSSCCCCEEECCSBSCCEEEEEEECCCSCSSCCCCCCCCCCCCCCSSCCCCSCCCCCSCSSSCEEEE--ETT
T ss_pred             CCCCEEEEcCCeEEEEEEEEEecCCeEEEeeCCeEccCCccceeeecccccccceeeecCCceeeccCceEEEEE--CCC
Confidence            3456788999999999999999999999999876543221100                           00000  012


Q ss_pred             eeEEEEccCCCCCceeEEEEEEcCCCcceEEEEEEEe
Q psy7036         171 FASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFD  207 (254)
Q Consensus       171 ~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~v~  207 (254)
                      .+.|.|.+++.+|+|.|+|.|.|..|....++.|.|.
T Consensus        93 ~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~  129 (130)
T d1gxea_          93 RSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVKVI  129 (130)
T ss_dssp             EEEEECSCCCTTTCEEEEEEEECSSCEEEEEEEEEEC
T ss_pred             EEEEEECcCChhcCEEEEEEEEECCCEEEEEEEEEEE
Confidence            3579999999999999999999999999888888774

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=9e-14  Score=82.67  Aligned_cols=84  Identities=23%  Similarity=0.417  Sum_probs=63.5

Q ss_pred             cCCCeeeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCC
Q psy7036         117 KKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELG  196 (254)
Q Consensus       117 ~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~  196 (254)
                      .......+..|+.+.|.|.+ +.|.+.+.|++++..+..+....+....++..  ..|.|.++..+|+|.|+|.|.|   
T Consensus         5 ~~l~~~~v~~G~~v~l~C~v-~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~--~~L~I~~v~~~D~G~Y~C~a~n---   78 (90)
T d1x44a1           5 KQLEDTTAYCGERVELECEV-SEDDANVKWFKNGEEIIPGPKSRYRIRVEGKK--HILIIEGATKADAAEYSVMTTG---   78 (90)
T ss_dssp             BCCCCEEEETTEEEEEEEEC-SSSSCCCEEEETTEECCCSTTCSEEEEEETTE--EEEEEEEECTTTCSEEEEEETT---
T ss_pred             cCCCCEEEeCCCcEEEEEEE-CCCCceEEEEEeecccCCCCCccEEEEEeCCc--cEEEECccccccCEEEEEEEec---
Confidence            34466788899999999998 56888999999999987665544444333332  3799999999999999999865   


Q ss_pred             cceEEEEEEEe
Q psy7036         197 ESNATISLNFD  207 (254)
Q Consensus       197 ~~~~~~~~~v~  207 (254)
                       ...+..|.|.
T Consensus        79 -~~~~a~l~V~   88 (90)
T d1x44a1          79 -GQSSAKLSVD   88 (90)
T ss_dssp             -EEEEEEEEEE
T ss_pred             -ceEEEEEEEE
Confidence             3445555554

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=7.1e-15  Score=85.83  Aligned_cols=72  Identities=19%  Similarity=0.227  Sum_probs=59.9

Q ss_pred             CCeeeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcc
Q psy7036         119 PSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGES  198 (254)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~  198 (254)
                      +....+.+|+.+.|.|.+.|.|.|.+.|+|++..+...                 +.+.+++.+|+|.|+|.|.|..|..
T Consensus        11 p~~~~~~~G~~~~l~C~a~G~P~P~v~W~k~g~~~~~~-----------------~~~~~v~~~d~G~Y~C~A~N~~G~~   73 (84)
T d2oz4a3          11 PGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPI-----------------GESVTVTRDLEGTYLCRARSTQGEV   73 (84)
T ss_dssp             CSEEEEETTCEECCCCCCEEESCCEEEEEETTTEECCT-----------------TSCEECCGGGCEEEEEEEEETTEEE
T ss_pred             CccEEEeCCCEEEEEEEEeEcCccEEEEEEeeccceee-----------------eeeeccccCCCCEEEEEEEcCCCEE
Confidence            45677889999999999999999999999988765322                 2234567899999999999999998


Q ss_pred             eEEEEEEEe
Q psy7036         199 NATISLNFD  207 (254)
Q Consensus       199 ~~~~~~~v~  207 (254)
                      +..+.|.|.
T Consensus        74 ~~~~~l~V~   82 (84)
T d2oz4a3          74 TREVTVNVL   82 (84)
T ss_dssp             EEEEEEEEE
T ss_pred             EEEEEEEEE
Confidence            888888876

>d1l6za2 b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.49  E-value=1e-13  Score=83.58  Aligned_cols=82  Identities=17%  Similarity=0.279  Sum_probs=64.4

Q ss_pred             CeeeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcce
Q psy7036         120 SIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESN  199 (254)
Q Consensus       120 ~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~  199 (254)
                      ....+.+|+.+.|.|.+.+ +.+.+.|++++..+.......... ...     .|.|.+++.+|.|.|+|.|.|..|...
T Consensus        11 ~~~~v~~g~~v~l~C~~~~-~~~~v~W~~~~~~l~~~~~~~~~~-~~~-----~L~I~~v~~~d~G~Y~C~a~N~~g~~~   83 (96)
T d1l6za2          11 TNTTVKELDSVTLTCLSND-IGANIQWLFNSQSLQLTERMTLSQ-NNS-----ILRIDPIKREDAGEYQCEISNPVSVRR   83 (96)
T ss_dssp             SCSEECTTSCEEEEECCCC-SSCEEEEEETTEECCCCTTEEEET-TTT-----EEEECSCCGGGCEEEEEEEESSSCCEE
T ss_pred             CceEEeCCCeEEEEEccCC-CCCCEEEEEeeeecccccceeccC-Cce-----EEEEeccchhhceEEEEEEEeCCCCeE
Confidence            3456788999999999855 567999999999987666544322 222     799999999999999999999988763


Q ss_pred             -EEEEEEEec
Q psy7036         200 -ATISLNFDS  208 (254)
Q Consensus       200 -~~~~~~v~~  208 (254)
                       ..+.|.|..
T Consensus        84 S~~~~L~V~~   93 (96)
T d1l6za2          84 SNSIKLDIIF   93 (96)
T ss_dssp             CCCCEEEECC
T ss_pred             EEeEEEEEEc
Confidence             457777753

>d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Semaphorin 4d Ig-like domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=1.3e-14  Score=86.48  Aligned_cols=78  Identities=12%  Similarity=0.151  Sum_probs=59.2

Q ss_pred             ceeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcCCCceE
Q psy7036          17 LRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVA   96 (254)
Q Consensus        17 ~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~   96 (254)
                      ...+.+|+++.|.|.+.+ +.+.+.|+++|..+........ ...++      .|.|.+++..|+|.|+|.+.|..+...
T Consensus         6 ~~~~~~G~~~~l~C~~~g-~~~~v~W~~~g~~l~~~~~~~~-~~~~~------~L~I~~v~~~DsG~Y~C~A~n~~g~~~   77 (92)
T d1olza1           6 QHFFKHGGTAELKCSQKS-NLARVFWKFQNGVLKAESPKYG-LMGRK------NLLIFNLSEGDSGVYQCLSEERVKNKT   77 (92)
T ss_dssp             EEEEETTSCEEECCCCSC-TTCEEEEEESSSBCCCCSSSBC-CTTTT------CEEECSCCGGGCEEEEEEEEEECSSSE
T ss_pred             heeEeCCCEEEEEEEeec-cCCceeeecCcccceeeeeeee-cceee------EEEECCCCHHHCcEEEEEEEEcCCCEE
Confidence            457899999999999987 6689999999988765433211 11111      699999999999999999999887655


Q ss_pred             EEEEEE
Q psy7036          97 ASINLN  102 (254)
Q Consensus        97 ~~~~l~  102 (254)
                      ....|.
T Consensus        78 ~~~~l~   83 (92)
T d1olza1          78 VFQVVA   83 (92)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            444433

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=7e-14  Score=83.33  Aligned_cols=77  Identities=14%  Similarity=0.214  Sum_probs=60.4

Q ss_pred             CCCccccCCCeeeecCCCeEEEEEEEeeCCC-CeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEE
Q psy7036         111 LAPTFLKKPSIRQEDDGKRLLFECRIQADPA-PTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKV  189 (254)
Q Consensus       111 ~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~-~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C  189 (254)
                      .+|.+...+..+.+.+|+.+.|.|.+.+.++ +.+.|+|++..+..... .. ...++     .|.|.+++.+|+|.|+|
T Consensus         5 ~~P~~~~~~~~v~~~~G~~v~L~C~~~g~~~~~~i~W~k~~~~l~~~~~-~~-~~~~~-----~L~I~~v~~~D~G~Y~C   77 (93)
T d1n26a1           5 RCPAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPS-RW-AGMGR-----RLLLRSVQLHDSGNYSC   77 (93)
T ss_dssp             CCCCCCCCTTEEEECTTCCEEEECTTSCTTCCSEEEEEEECSSSSCCCE-EE-EEESS-----EEEECSCCGGGCEEEEE
T ss_pred             CCCcEEeCCCCEEEeCCCcEEEEEEeecCCCCceEEEEEccccccceee-EE-ecCCC-----EEEECCCChhcCEEEEE
Confidence            4566667777788899999999999988765 58999999988764433 22 22233     79999999999999999


Q ss_pred             EEEcC
Q psy7036         190 TAKNE  194 (254)
Q Consensus       190 ~~~~~  194 (254)
                      .|.|.
T Consensus        78 ~a~n~   82 (93)
T d1n26a1          78 YRAGR   82 (93)
T ss_dssp             ESSSS
T ss_pred             EECCc
Confidence            98764

>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=2.4e-14  Score=88.08  Aligned_cols=89  Identities=16%  Similarity=0.214  Sum_probs=62.8

Q ss_pred             CCeeeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcC--CCC--ceeeEEEEccCCCCCceeEEEEEEcC
Q psy7036         119 PSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDK--DGH--SYFASLEIIDVTIEDAGKYKVTAKNE  194 (254)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~--~~~--~~~~~l~i~~~~~~d~G~y~C~~~~~  194 (254)
                      ...+.+.+|+++.|.|.+.+.|.|.+.|++++..+............  ...  ...+.|.|.+++.+|.|.|+|.|.|.
T Consensus        11 ~~~v~v~~g~~v~L~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~   90 (105)
T d1nbqa1          11 EPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTREDTGTYTCMVSEE   90 (105)
T ss_dssp             CSBCCEETTCCCEEECEEESCSSEEEEEEEEETTEEEESEETTEECTTTTTTCEEETTEEECSCCCTTSCSEEEEEEEET
T ss_pred             CCeEEEeCCCeEEEEEEeCCCCCCeeEEEeeeeceeeeeeccceeeccccceeeecCceEEEecccccceeeEEEEEEEC
Confidence            34566788999999999999999999999976543321111111111  110  11237999999999999999999999


Q ss_pred             CCcceEEEEEEEe
Q psy7036         195 LGESNATISLNFD  207 (254)
Q Consensus       195 ~~~~~~~~~~~v~  207 (254)
                      .|.....+.|.|.
T Consensus        91 ~G~~~~~~~v~v~  103 (105)
T d1nbqa1          91 GGNSYGEVKVKLI  103 (105)
T ss_dssp             TSSCEECCEEECC
T ss_pred             CCCEEEEEEEEEE
Confidence            9988766666553

>d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=99.47  E-value=1.2e-13  Score=81.55  Aligned_cols=74  Identities=16%  Similarity=0.317  Sum_probs=58.1

Q ss_pred             eeecCCCeEEEEEEEeeC-CCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcc-e
Q psy7036         122 RQEDDGKRLLFECRIQAD-PAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGES-N  199 (254)
Q Consensus       122 ~~~~~g~~~~l~C~~~~~-~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~-~  199 (254)
                      ..+.+|+.++|.|.+.+. |.+.+.|+|++..+....       .+.     .|.|.+++.+|+|.|+|.|.|..+.. +
T Consensus        10 ~~v~eG~~v~L~C~~~~~~p~~~~~W~k~g~~~~~~~-------~~~-----~l~i~~v~~~dsG~Y~C~a~n~~g~~~S   77 (88)
T d2fcba2          10 LEFQEGETIVLRCHSWKDKPLVKVTFFQNGKSKKFSR-------SDP-----NFSIPQANHSHSGDYHCTGNIGYTLYSS   77 (88)
T ss_dssp             SEECTTCCEEEEEEEGGGCCCEEEEEEETTEEEEEES-------SCC-----EEEETTCCGGGCEEEEEEEEETTEEEEC
T ss_pred             CeEecCCeEEEEEEecCCCCCcEEEEEeecccccccc-------ccc-----ccccCccCHHHCCeEEEEEEeCCCCEEe
Confidence            347789999999998654 566899999998764221       111     79999999999999999999998865 4


Q ss_pred             EEEEEEEe
Q psy7036         200 ATISLNFD  207 (254)
Q Consensus       200 ~~~~~~v~  207 (254)
                      ..+.|.|+
T Consensus        78 ~~v~l~V~   85 (88)
T d2fcba2          78 KPVTITVQ   85 (88)
T ss_dssp             CCEEEEEC
T ss_pred             eeEEEEEe
Confidence            56777776

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.46  E-value=2.7e-13  Score=82.76  Aligned_cols=92  Identities=15%  Similarity=0.229  Sum_probs=63.3

Q ss_pred             ccCCCeeeecCCCeEEEEEEEeeCCCCeEEEEECCEecccC--CcceEEEcCCC--CceeeEEEEccCCCCCceeEEEEE
Q psy7036         116 LKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKED--KRHKFSIDKDG--HSYFASLEIIDVTIEDAGKYKVTA  191 (254)
Q Consensus       116 ~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~--~~~~~~~~~~~--~~~~~~l~i~~~~~~d~G~y~C~~  191 (254)
                      ......+.+.+|+.+.|.|.+.+.|.|.+.|++++......  ...........  ....++|.|.+++.+|+|.|+|.+
T Consensus         5 ~t~~~~v~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tL~I~~v~~~D~G~Y~C~a   84 (102)
T d1f97a1           5 YTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGITFSSVTRKDNGEYTCMV   84 (102)
T ss_dssp             ECSCSEEEEETTCCEEEECEEESCSSEEEEEEEEETTEEEEEEETTEECGGGTTTEEEETTEEEESCCCGGGCEEEEEEE
T ss_pred             EccCCcEEEeCCCEEEEEEEcCCCCCCeEEEEeccccceeeeccccccccceeeEEEecCCEEEEeECCccCCEEEEEEE
Confidence            34445677889999999999999999999999854322110  00000000000  011247999999999999999999


Q ss_pred             EcCCCcceEEEEEEEe
Q psy7036         192 KNELGESNATISLNFD  207 (254)
Q Consensus       192 ~~~~~~~~~~~~~~v~  207 (254)
                      .|..|.....+.+.|.
T Consensus        85 ~n~~g~~~~~~~v~v~  100 (102)
T d1f97a1          85 SEEGGQNYGEVSIHLT  100 (102)
T ss_dssp             EETTSSSEEEEEEEEE
T ss_pred             EECCCCEEEEEEEEEE
Confidence            9999987766666553

>d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.46  E-value=1.1e-13  Score=84.86  Aligned_cols=77  Identities=18%  Similarity=0.260  Sum_probs=60.9

Q ss_pred             CeeeecCCCeEEEEEEE-eeCCCCeEEEEECCEecccCCcce-EEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCc
Q psy7036         120 SIRQEDDGKRLLFECRI-QADPAPTVIWSHSGVQVKEDKRHK-FSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGE  197 (254)
Q Consensus       120 ~~~~~~~g~~~~l~C~~-~~~~~~~~~W~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~  197 (254)
                      ..+.+.+|+.+.|.|.+ .+.|.+.+.|+|++..+......+ .....++     .|.|.+++.+|+|.|+|.|.|..|.
T Consensus        12 ~~v~v~eG~~~~l~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~-----~L~I~~v~~~D~G~Y~C~a~N~~g~   86 (105)
T d1cs6a2          12 DPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTG-----NLYIAKTEASDLGNYSCFATSHIDF   86 (105)
T ss_dssp             CCEEEETTSCEEECCCCCSEESCCEEEEEESSTTCBCCCCSSEEECTTTC-----CEEESSCCGGGCEEEEEEEEEEETT
T ss_pred             CCEEEeCCCeEEEEEEccCCCCCCEEEEEEeeccccccccceeeeecCCC-----EEeecccccccCcEEEEEEEECCCC
Confidence            45678899999999996 688999999999987765433333 3333333     6999999999999999999999887


Q ss_pred             ceEE
Q psy7036         198 SNAT  201 (254)
Q Consensus       198 ~~~~  201 (254)
                      ...+
T Consensus        87 ~~~~   90 (105)
T d1cs6a2          87 ITKS   90 (105)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            6655

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=2.2e-13  Score=82.57  Aligned_cols=69  Identities=17%  Similarity=0.173  Sum_probs=55.1

Q ss_pred             eeecCCCeEEEEE------EEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcC
Q psy7036          18 RQEDEGNRLIFEC------QLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNK   91 (254)
Q Consensus        18 ~~v~~g~~v~l~C------~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~   91 (254)
                      ..+..|....|.|      .+.+.|.|.+.|++||..+.........  ..+      .|.|.++..+|+|.|+|.|.|.
T Consensus         9 q~~~~g~~~~l~Cp~~~~~~~~~~p~P~i~W~kdg~~l~~~~~~~~~--~~~------~L~I~~v~~~D~G~Y~C~a~n~   80 (103)
T d1iray2           9 QKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSG--VKD------RLIVMNVAEKHRGNYTCHASYT   80 (103)
T ss_dssp             EEEESSSCEEEECTTGGGGCBTTTBCCCCEEEETTEECCCCSSSEEE--ETT------EEEESSCCGGGCEEEEEEEEEE
T ss_pred             EEEecCCCEEEEcCCccccccCCCCCCEEEEEECCccccCCCcEEEe--cCC------EEEEcccccccCcEEEEEEEEC
Confidence            4577899999999      4567889999999999999765443221  112      6999999999999999999987


Q ss_pred             CCc
Q psy7036          92 MGE   94 (254)
Q Consensus        92 ~~~   94 (254)
                      .+.
T Consensus        81 ~~g   83 (103)
T d1iray2          81 YLG   83 (103)
T ss_dssp             ETT
T ss_pred             cCC
Confidence            764

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.45  E-value=1.1e-12  Score=83.24  Aligned_cols=92  Identities=15%  Similarity=0.199  Sum_probs=63.6

Q ss_pred             CCCceeecCCCeEEEEEEEeeC---CCCceEEEeCCEEe-----e----------eCCcceEEEeecCCcceEEEEEEec
Q psy7036          14 KPQLRQEDEGNRLIFECQLLCN---PKPDIVWFRGETQL-----S----------EDTRTVMKTTPIGTNKYLVALELDD   75 (254)
Q Consensus        14 ~~~~~~v~~g~~v~l~C~~~~~---~~~~v~W~~~~~~~-----~----------~~~~~~~~~~~~~~~~~~~~l~i~~   75 (254)
                      +...+.+.+|++|+|.|.+...   ....+.|++.+...     .          .....+............++|.|.+
T Consensus         8 p~~~V~~~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~   87 (126)
T d1pkoa_           8 PGHPIRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKESIGEGKVALRIQN   87 (126)
T ss_dssp             CSSCEEEETTSCEEEEEEEESCCCCTTSEEEEEEC--CCEEEEEETTEECGGGSCSTTTTSEEEECTTGGGTEEEEEESS
T ss_pred             CCCCEEEEcCCcEEEEEEEECcCCCCceEEEEeecCCcceEEEEEeccccccccccccceeEEEeeccccCCeEEEEEEE
Confidence            3445788999999999998532   23468999865321     0          0111223333333334467999999


Q ss_pred             cCCCCCeEEEEEEEcCCCceEEEEEEEEec
Q psy7036          76 VIETDAGLYKVKAKNKMGEVAASINLNFSR  105 (254)
Q Consensus        76 ~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~  105 (254)
                      ++.+|+|.|+|.+.+..+.....+.|.|.+
T Consensus        88 v~~~D~G~Y~C~v~~~~~~~~~~v~L~V~~  117 (126)
T d1pkoa_          88 VRFSDEGGYTCFFRDHSYQEEAAVELKVED  117 (126)
T ss_dssp             CCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             EchhHCeEEEEEEEECCCEEEEEEEEEEeC
Confidence            999999999999999888888888888863

>d1fnla2 b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=99.45  E-value=1.1e-13  Score=81.92  Aligned_cols=74  Identities=14%  Similarity=0.219  Sum_probs=57.0

Q ss_pred             eeecCCCeEEEEEEEeeC-CCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcc-e
Q psy7036         122 RQEDDGKRLLFECRIQAD-PAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGES-N  199 (254)
Q Consensus       122 ~~~~~g~~~~l~C~~~~~-~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~-~  199 (254)
                      ..+.+|+.+.|.|.+.+. |.+.+.|+||+..+....       .+.     .|.|.+++.+|+|.|+|.|.|..+.. +
T Consensus        12 ~~v~eG~~v~L~C~~~~~~p~~~~~W~kng~~~~~~~-------~~~-----~l~I~~v~~~dsG~Y~C~a~n~~~~~~S   79 (89)
T d1fnla2          12 WVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKYFH-------HNS-----DFHIPKATLKDSGSYFCRGLVGSKNVSS   79 (89)
T ss_dssp             SEEETTCCEEEEEEECTTCCCEEEEEEETTEEEEEEE-------ECC-----CEEESSCCGGGCEEEEEEEEETTEEEEC
T ss_pred             CeEccCCeEEEEEEecCCCCCcEEEEEEcccccceec-------ccc-----ccEECccceeccceEEEEEEeCCCCeEE
Confidence            347789999999998754 555799999998764221       111     68999999999999999999988764 3


Q ss_pred             EEEEEEEe
Q psy7036         200 ATISLNFD  207 (254)
Q Consensus       200 ~~~~~~v~  207 (254)
                      ..+.|.|+
T Consensus        80 ~~v~itV~   87 (89)
T d1fnla2          80 ETVNITIT   87 (89)
T ss_dssp             CCEEEEEE
T ss_pred             eeEEEEEE
Confidence            56667765

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=1.5e-14  Score=90.60  Aligned_cols=98  Identities=17%  Similarity=0.310  Sum_probs=71.7

Q ss_pred             CCCccccCCCeeeecCCCeEEEEEEEeeCC-CCeEEEEECCEecccCCcceE--EEcCCCCceeeEEEEccCCCCC-cee
Q psy7036         111 LAPTFLKKPSIRQEDDGKRLLFECRIQADP-APTVIWSHSGVQVKEDKRHKF--SIDKDGHSYFASLEIIDVTIED-AGK  186 (254)
Q Consensus       111 ~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~-~~~~~W~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~i~~~~~~d-~G~  186 (254)
                      .||.+. .+....+.+|+.+.|.|.+.+.+ .+.+.|++++..+.......+  ..........+.|.|.++..+| +|.
T Consensus         6 ~Pp~i~-~~~~~~~~~G~~~~l~C~v~~~~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~~G~   84 (115)
T d2crya1           6 GPPIIS-STQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVISTLTISNIVRADFQTI   84 (115)
T ss_dssp             SSCCEE-EECCCCCCTTSCCCCCEEECCSSCCSEEEEESSSCEECSEEETTEEEEEEEETTEEEEEEECTTCCHHHHHSC
T ss_pred             cCCEEe-cCCCEEEecCCEEEEEEEeecCCCeeEEEEeeeeeeEeeeeeeeEeeeeeccccCcEEEEEEeccchhcCCeE
Confidence            455443 33445677899999999998854 557999999988765433222  2222223344579999999998 699


Q ss_pred             EEEEEEcCCCcceEEEEEEEecC
Q psy7036         187 YKVTAKNELGESNATISLNFDSD  209 (254)
Q Consensus       187 y~C~~~~~~~~~~~~~~~~v~~~  209 (254)
                      |+|.|.|..|.....+.|.|...
T Consensus        85 Y~C~A~N~~G~~~~~~~L~V~~~  107 (115)
T d2crya1          85 YNCTAWNSFGSDTEIIRLKEQGS  107 (115)
T ss_dssp             EEEEEECSSCEEEEEECCCCSCS
T ss_pred             EEEEEEECCCeEEEEEEEEEECC
Confidence            99999999999999988887653

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=4.7e-13  Score=80.64  Aligned_cols=91  Identities=21%  Similarity=0.273  Sum_probs=60.7

Q ss_pred             CccccCCCeeeecCCCeEEEEEEEeeCCCCeEEEE-EC-CEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEE
Q psy7036         113 PTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWS-HS-GVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVT  190 (254)
Q Consensus       113 ~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~-~~-~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~  190 (254)
                      |.+. ......+..|+.+.|.|.+.|.|.|.+.|+ ++ +........ .......  ....+|.|.++..+|+|.|+|.
T Consensus         3 P~f~-~~~~~~v~~G~~v~l~C~~~g~p~p~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~L~I~~v~~~D~G~Y~C~   78 (96)
T d2c9aa1           3 PHFL-RIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKE-IKVTSSR--RFIASFNVVNTTKRDAGKYRCM   78 (96)
T ss_dssp             CEEC-CCCCEEECSSSCEEEEEEEESCCCSSCEEEEEETTBCCCCEEE-EEEEETT--EEEEEEEECSCCGGGCSEEEEE
T ss_pred             Ceec-ccCCEEEeCCCEEEEEEEEeecCCCcEEEEEeeeeeeeecCCc-eeEEEee--cCceEEEECCCCHHHCeEEEEE
Confidence            4444 456778999999999999999987764433 22 222211111 1111111  2234799999999999999999


Q ss_pred             EEcCCCcce-EEEEEEEe
Q psy7036         191 AKNELGESN-ATISLNFD  207 (254)
Q Consensus       191 ~~~~~~~~~-~~~~~~v~  207 (254)
                      |.|..|... ....|.|+
T Consensus        79 a~N~~G~~~s~~a~L~Vk   96 (96)
T d2c9aa1          79 IRTEGGVGISNYAELVVK   96 (96)
T ss_dssp             EEETTEEEEEEEEEEEEC
T ss_pred             EEeCCCeEEEEEEEEEEC
Confidence            999999864 44677663

>d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Semaphorin 4d Ig-like domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=1.3e-13  Score=82.05  Aligned_cols=77  Identities=13%  Similarity=0.280  Sum_probs=60.4

Q ss_pred             eeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcceEE
Q psy7036         122 RQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNAT  201 (254)
Q Consensus       122 ~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~  201 (254)
                      ..+.+|+++.|.|.+.+ +.+.+.|++++..+...... .....++     .|.|.+++.+|+|.|+|.|.|..+.....
T Consensus         7 ~~~~~G~~~~l~C~~~g-~~~~v~W~~~g~~l~~~~~~-~~~~~~~-----~L~I~~v~~~DsG~Y~C~A~n~~g~~~~~   79 (92)
T d1olza1           7 HFFKHGGTAELKCSQKS-NLARVFWKFQNGVLKAESPK-YGLMGRK-----NLLIFNLSEGDSGVYQCLSEERVKNKTVF   79 (92)
T ss_dssp             EEEETTSCEEECCCCSC-TTCEEEEEESSSBCCCCSSS-BCCTTTT-----CEEECSCCGGGCEEEEEEEEEECSSSEEE
T ss_pred             eeEeCCCEEEEEEEeec-cCCceeeecCcccceeeeee-eecceee-----EEEECCCCHHHCcEEEEEEEEcCCCEEEE
Confidence            45778999999999987 66799999999887655432 2233343     69999999999999999999998876555


Q ss_pred             EEEE
Q psy7036         202 ISLN  205 (254)
Q Consensus       202 ~~~~  205 (254)
                      ..+.
T Consensus        80 ~~l~   83 (92)
T d1olza1          80 QVVA   83 (92)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            4443

>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-2 (ICAM-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=1.1e-13  Score=84.82  Aligned_cols=90  Identities=13%  Similarity=0.099  Sum_probs=63.3

Q ss_pred             eEeCCCceeecCCCeEEEEEEEee-C--CCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEE
Q psy7036          11 FTQKPQLRQEDEGNRLIFECQLLC-N--PKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVK   87 (254)
Q Consensus        11 ~~~~~~~~~v~~g~~v~l~C~~~~-~--~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~   87 (254)
                      +...+....+.+|+.++|+|.+.| .  |.+.++|+|++..+........   ........+.|.|...+.+|.|.|+|+
T Consensus         5 v~i~~~p~~v~~G~~v~l~C~v~g~~p~p~~~i~W~~~~~~i~~~~~~~~---~~~~~~~~s~l~~~~~~~d~g~~ytC~   81 (106)
T d1zxqa1           5 VILTLQPTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKA---APAPQEATATFNSTADREDGHRNFSCL   81 (106)
T ss_dssp             CEEEEESSEECTTSEEEEEEEECSCBCGGGEEEEEEETTEEEEEEECCSS---TTCTTCEEEEEEEECCGGGGGCEEEEE
T ss_pred             CEecCCCCEEeCCCEEEEEEEEeCcccCCCceEEEEcCCEEeeecccceE---eecccceeEEEEEeeehhcCCcEEEEE
Confidence            334566667899999999999986 3  4457999999998865432221   112233445678887778888899999


Q ss_pred             EEcCCCceEEEEEEEE
Q psy7036          88 AKNKMGEVAASINLNF  103 (254)
Q Consensus        88 ~~~~~~~~~~~~~l~v  103 (254)
                      |.|..+.......+.+
T Consensus        82 A~n~~~~~~~~~~~~~   97 (106)
T d1zxqa1          82 AVLDLMSRGGNIFHKH   97 (106)
T ss_dssp             EEEECGGGTCCEEEEE
T ss_pred             EEecCCCCCCeeEecc
Confidence            9998876544455554

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=1.9e-13  Score=82.83  Aligned_cols=83  Identities=16%  Similarity=0.239  Sum_probs=65.0

Q ss_pred             CeeeecCCCeEEEEEEEe-eCCCCeEEEEECCEecccC--CcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCC
Q psy7036         120 SIRQEDDGKRLLFECRIQ-ADPAPTVIWSHSGVQVKED--KRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELG  196 (254)
Q Consensus       120 ~~~~~~~g~~~~l~C~~~-~~~~~~~~W~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~  196 (254)
                      ......+|+.+.|.|.+. +.+.+.+.|+|++..+...  ...++... ++     .|.|.+++.+|+|.|+|.+.|..|
T Consensus        10 ~~~~~~~~e~~~l~C~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~-~~-----~L~I~~v~~~D~G~Y~C~a~N~~g   83 (101)
T d1iray1          10 IILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQH-KE-----KLWFVPAKVEDSGHYYCVVRNSSY   83 (101)
T ss_dssp             CCEEEETTSCEEECCCCCGGGCSSEEEEECSSTTSBCCCCTTSSEEEE-TT-----EEEETTCCGGGCEEEEEEEEETTE
T ss_pred             cEEEEeCCCeEEEEeeCCCCCCCceEEEEECCcccccccccceEEecc-CC-----EEEeccceecCCEEEEEEEECCCC
Confidence            345667899999999875 6788899999998655432  22223222 22     799999999999999999999999


Q ss_pred             cceEEEEEEEec
Q psy7036         197 ESNATISLNFDS  208 (254)
Q Consensus       197 ~~~~~~~~~v~~  208 (254)
                      ....++.|.|..
T Consensus        84 ~~~~~~~L~V~~   95 (101)
T d1iray1          84 CLRIKISAKFVE   95 (101)
T ss_dssp             EEEEEEEEEEEC
T ss_pred             eEEEEEEEEEEe
Confidence            999999998874

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=5.8e-13  Score=79.74  Aligned_cols=86  Identities=20%  Similarity=0.338  Sum_probs=60.9

Q ss_pred             CCccccCC-CeeeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCc-ceEEEcCCCCceeeEEEEccCCCCCceeEEE
Q psy7036         112 APTFLKKP-SIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKR-HKFSIDKDGHSYFASLEIIDVTIEDAGKYKV  189 (254)
Q Consensus       112 ~~~~~~~~-~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C  189 (254)
                      +|.+.... ....+.+|+.+.|.|.+ +.|.+.+.|++++..+..+.. ..+... ++.   ..|.|.++..+|+|.|+|
T Consensus         5 ~~~f~~~l~~~~~v~~G~~v~l~c~v-~~p~~~v~W~k~g~~i~~~~~~~~~~~~-~~~---~~L~I~~~~~~D~G~Y~c   79 (94)
T d1pd6a_           5 STAFQKKLEPAYQVSKGHKIRLTVEL-ADHDAEVKWLKNGQEIQMSGSKYIFESI-GAK---RTLTISQCSLADDAAYQC   79 (94)
T ss_dssp             TSSCSEECCSEEEEETTSCEEEEEEC-SSSSSCCEEEESSSEECCCSSSSEEEEE-TTE---EEEEECSCSSSSCEEEEE
T ss_pred             CCcEEEeCCCCEEECcCCeEEEEEEE-CCCCceEEEEEcCccceeeeeeEeeecc-CCe---EEeecCCCCceecEEEEE
Confidence            34444333 34568899999999998 558889999999999875543 333332 222   379999999999999999


Q ss_pred             EEEcCCCcceEEEEEEE
Q psy7036         190 TAKNELGESNATISLNF  206 (254)
Q Consensus       190 ~~~~~~~~~~~~~~~~v  206 (254)
                      .|.|.    ..+..|.|
T Consensus        80 ~a~n~----~~s~~l~V   92 (94)
T d1pd6a_          80 VVGGE----KCSTELFV   92 (94)
T ss_dssp             EETTE----EECCEEEE
T ss_pred             EEeeE----EEEEEEEE
Confidence            98653    34444544

>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=3.5e-13  Score=79.72  Aligned_cols=75  Identities=20%  Similarity=0.282  Sum_probs=58.5

Q ss_pred             eeecCCCeEEEEEEEeeC-CCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcc-e
Q psy7036         122 RQEDDGKRLLFECRIQAD-PAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGES-N  199 (254)
Q Consensus       122 ~~~~~g~~~~l~C~~~~~-~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~-~  199 (254)
                      ..+.+|+.++|.|.+.+. +...+.|+|+|..+.....       .     ..|.|.+++.+|+|.|.|.|.|..+.. +
T Consensus        10 ~~V~eG~~v~L~C~~~~~~~~~~~~w~k~g~~~~~~~~-------~-----~~l~i~~~~~~dsG~Y~C~a~n~~~~~~S   77 (89)
T d1f2qa2          10 EVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYWYE-------N-----HNISITNATVEDSGTYYCTGKVWQLDYES   77 (89)
T ss_dssp             SEEETTSCEEEEEEEGGGCCEEEEEEEETTEECCSCCC-------S-----SEEEESSCCGGGCEEEEEEEEETTEEEEC
T ss_pred             CeEeCCCEEEEEEEecCCCCCeEEEEEEeeeccccccc-------c-----ceEEEeeeeeecCcEEEEEEEeCCCCeEe
Confidence            356789999999998765 4557999999988753221       1     279999999999999999999987754 4


Q ss_pred             EEEEEEEec
Q psy7036         200 ATISLNFDS  208 (254)
Q Consensus       200 ~~~~~~v~~  208 (254)
                      ..+.|.|..
T Consensus        78 ~~v~i~V~~   86 (89)
T d1f2qa2          78 EPLNITVIK   86 (89)
T ss_dssp             CCEEEEEEC
T ss_pred             eeEEEEEEe
Confidence            567777764

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=9.6e-13  Score=79.72  Aligned_cols=70  Identities=17%  Similarity=0.217  Sum_probs=56.0

Q ss_pred             eeecCCCeEEEEE------EEeeCCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCC
Q psy7036         122 RQEDDGKRLLFEC------RIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNEL  195 (254)
Q Consensus       122 ~~~~~g~~~~l~C------~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~  195 (254)
                      ..+..|....|.|      .+.++|.|.+.|++++..+..... +..... +     .|.|.++..+|+|.|+|.|.|..
T Consensus         9 q~~~~g~~~~l~Cp~~~~~~~~~~p~P~i~W~kdg~~l~~~~~-~~~~~~-~-----~L~I~~v~~~D~G~Y~C~a~n~~   81 (103)
T d1iray2           9 QKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNI-HFSGVK-D-----RLIVMNVAEKHRGNYTCHASYTY   81 (103)
T ss_dssp             EEEESSSCEEEECTTGGGGCBTTTBCCCCEEEETTEECCCCSS-SEEEET-T-----EEEESSCCGGGCEEEEEEEEEEE
T ss_pred             EEEecCCCEEEEcCCccccccCCCCCCEEEEEECCccccCCCc-EEEecC-C-----EEEEcccccccCcEEEEEEEECc
Confidence            4567899999999      456889999999999999875443 232322 2     79999999999999999999987


Q ss_pred             Ccc
Q psy7036         196 GES  198 (254)
Q Consensus       196 ~~~  198 (254)
                      +..
T Consensus        82 ~g~   84 (103)
T d1iray2          82 LGK   84 (103)
T ss_dssp             TTE
T ss_pred             CCE
Confidence            643

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=1.4e-12  Score=79.24  Aligned_cols=89  Identities=13%  Similarity=0.204  Sum_probs=65.9

Q ss_pred             CCccccCCCeeeecCCCeEEEEEEEee-CCCC--eEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEE
Q psy7036         112 APTFLKKPSIRQEDDGKRLLFECRIQA-DPAP--TVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYK  188 (254)
Q Consensus       112 ~~~~~~~~~~~~~~~g~~~~l~C~~~~-~~~~--~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~  188 (254)
                      |+.+...+....+..|+.++|.|.+.| .|.+  .+.|++++..+.....       ......+.|.|...+.+|.|.|+
T Consensus         4 P~~v~i~p~~~~v~~G~~~~L~C~v~g~~P~p~~~v~W~~~~~~l~~~~~-------~~~~~~s~l~i~~~~~dd~g~yt   76 (103)
T d1iama1           4 PERVELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREPA-------VGEPAEVTTTVLVRRDHHGAQFS   76 (103)
T ss_dssp             CSEEEECCCCSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEEC-------CTTTEEEEEEEECCSSCSSCEEE
T ss_pred             CCceEEeCCCceEeCCCEEEEEEEecCCCCCCceEEEEcccccccccccc-------ccccceEEEEEeeehhHCCCEEE
Confidence            444455555556788999999999986 4544  5889999988753211       12223458999999999999999


Q ss_pred             EEEEcCCCcceEEEEEEEe
Q psy7036         189 VTAKNELGESNATISLNFD  207 (254)
Q Consensus       189 C~~~~~~~~~~~~~~~~v~  207 (254)
                      |.|.|..|.....+.+.+.
T Consensus        77 C~A~n~~g~~~~~~~~~~s   95 (103)
T d1iama1          77 CRTELDLRPQGLELFENTS   95 (103)
T ss_dssp             EEEEEECGGGTSCEEEEEC
T ss_pred             EEEEeCCCCccCeEeeeEc
Confidence            9999999988777666664

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

Probab=99.40  E-value=4.8e-14  Score=83.58  Aligned_cols=82  Identities=16%  Similarity=0.175  Sum_probs=63.7

Q ss_pred             cCCCeeeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCC
Q psy7036         117 KKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELG  196 (254)
Q Consensus       117 ~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~  196 (254)
                      ....+..+.+|+.+.|.|.+ +.|.+.+.|+++|..+.......+....+.    ..|.|.++..+|+|.|+|.|.|.. 
T Consensus         6 ~~l~d~~v~~G~~~~~~c~v-s~p~~~v~W~k~g~~i~~~~~~~~~~~~~~----~~L~I~~~~~~D~G~Y~c~a~n~~-   79 (89)
T d1tiua_           6 KPLYGVEVFVGETAHFEIEL-SEPDVHGQWKLKGQPLTASPDCEIIEDGKK----HILILHNCQLGMTGEVSFQAANAK-   79 (89)
T ss_dssp             BCCCCEEEETTSCCCEEEBC-SSSSCCCBCCSSSCCCCSSSSCEEEECSSC----EEEECCSCCSCCCSEECCBCSSCB-
T ss_pred             cCCcCEEEeCCCcEEEEEEE-CCCCcEEEEEEeeeecccceeEEEEeecee----EEEEEcCCChhcCEEEEEEECceE-
Confidence            34456788899999999997 578889999999999987776666554332    379999999999999999986643 


Q ss_pred             cceEEEEEEEe
Q psy7036         197 ESNATISLNFD  207 (254)
Q Consensus       197 ~~~~~~~~~v~  207 (254)
                         .+..|.|.
T Consensus        80 ---~sa~l~V~   87 (89)
T d1tiua_          80 ---SAANLKVK   87 (89)
T ss_dssp             ---CCEEEEEE
T ss_pred             ---EEEEEEEE
Confidence               33445554

>d2fcba1 b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=99.38  E-value=5.8e-13  Score=78.09  Aligned_cols=72  Identities=14%  Similarity=0.262  Sum_probs=55.7

Q ss_pred             cccCCCeeeecCCCeEEEEEEEeeCCCC-eEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEc
Q psy7036         115 FLKKPSIRQEDDGKRLLFECRIQADPAP-TVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKN  193 (254)
Q Consensus       115 ~~~~~~~~~~~~g~~~~l~C~~~~~~~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~  193 (254)
                      +...+....+.+|+.++|.|.+.+.+.+ .+.|++++..+.....              .|.|.+++.+|+|.|+|.+.|
T Consensus         7 i~~~P~~~~v~~G~~v~L~C~~~~~~~~~~~~w~~~g~~~~~~~~--------------~l~i~~v~~~dsG~Y~C~a~n   72 (85)
T d2fcba1           7 LKLEPQWINVLQEDSVTLTCRGTHSPESDSIQWFHNGNLIPTHTQ--------------PSYRFKANNNDSGEYTCQTGQ   72 (85)
T ss_dssp             EEEESCCSEEETTCEEEEEEECSSCCCTTCCEEEETTEECTTCCS--------------SEEEEECCGGGCEEEEEECTT
T ss_pred             EEECCCCeEEcCCCeEEEEEEEeeccceeEEEeeccccccccccc--------------ceEEeeccccCCcEEEEECCC
Confidence            3444455678899999999999888765 5889999988754321              688999999999999999987


Q ss_pred             CCCcceE
Q psy7036         194 ELGESNA  200 (254)
Q Consensus       194 ~~~~~~~  200 (254)
                      ..++...
T Consensus        73 s~~S~~v   79 (85)
T d2fcba1          73 TSLSDPV   79 (85)
T ss_dssp             SBCCCCE
T ss_pred             CcccccE
Confidence            6554443

>d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=99.37  E-value=9.6e-13  Score=76.92  Aligned_cols=72  Identities=15%  Similarity=0.280  Sum_probs=54.9

Q ss_pred             CccccCCCeeeecCCCeEEEEEEEeeCCCCe-EEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEE
Q psy7036         113 PTFLKKPSIRQEDDGKRLLFECRIQADPAPT-VIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTA  191 (254)
Q Consensus       113 ~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~-~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~  191 (254)
                      |.+...+....+.+|+.++|.|.+.+.+.+. +.|++++..+....              ..|.|.+++.+|+|.|+|.+
T Consensus         6 pvi~~~P~~~~v~~G~~vtL~C~~~~~~~~~~~~~~~~~~~~~~~~--------------~~l~i~~~~~~d~G~Y~C~a   71 (84)
T d1fnla1           6 AVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQA--------------SSYFIDAATVNDSGEYRCQT   71 (84)
T ss_dssp             CEEEEESCCSEEETTCCEEEEEECCCBTTBCCCEEEETTEEEESSC--------------SEEEESSCCGGGCEEEEEEC
T ss_pred             CEEEECCCCcEEeCCCeEEEEEEeccCCCCeEEEEeeeceeeeecc--------------eeeEecCCcccCCEEEEEEc
Confidence            4444555566788999999999998888775 66788887654321              17999999999999999998


Q ss_pred             EcCCCcc
Q psy7036         192 KNELGES  198 (254)
Q Consensus       192 ~~~~~~~  198 (254)
                      .|...+.
T Consensus        72 ~~s~~S~   78 (84)
T d1fnla1          72 NLSTLSD   78 (84)
T ss_dssp             SSSCCCC
T ss_pred             cCCCccc
Confidence            7754443

>d1f2qa1 b.1.1.4 (A:4-85) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=5.7e-13  Score=77.52  Aligned_cols=77  Identities=21%  Similarity=0.351  Sum_probs=54.4

Q ss_pred             ccccCCCeeeecCCCeEEEEEEEeeCCCCe-EEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEE
Q psy7036         114 TFLKKPSIRQEDDGKRLLFECRIQADPAPT-VIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAK  192 (254)
Q Consensus       114 ~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~-~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~  192 (254)
                      .+...+....+.+|+.++|.|.+.+.+.+. +.|++++..+....              ..|.|.+++.+|+|.|.|.|.
T Consensus         3 ~It~~P~~~~v~~G~~v~L~C~~~~~~~~~~~~~~~~~~~~~~~~--------------~~l~i~~v~~~d~G~Y~C~a~   68 (82)
T d1f2qa1           3 KVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEETN--------------SSLNIVNAKFEDSGEYKCQHQ   68 (82)
T ss_dssp             CCEEESSCSEEETTCCEEEECCTTCC----CCEEEETTEECSCCS--------------SEEEECSCCGGGCEEEEEECT
T ss_pred             EEEEcCCCeEEeCCCeEEEEEEEeeeeeecceeeeeeeeeeeccc--------------ceeEECCCChhhCCcEEEEec
Confidence            344445556688999999999999888774 66788887764322              179999999999999999998


Q ss_pred             cCCCcceEEEEEEE
Q psy7036         193 NELGESNATISLNF  206 (254)
Q Consensus       193 ~~~~~~~~~~~~~v  206 (254)
                      |...+..  +.|.|
T Consensus        69 ~s~~S~~--v~l~V   80 (82)
T d1f2qa1          69 QVNESEP--VYLEV   80 (82)
T ss_dssp             TSSCCCC--EEEEE
T ss_pred             CCCCccc--EEEEE
Confidence            7655443  44444

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=8.7e-13  Score=78.95  Aligned_cols=85  Identities=13%  Similarity=0.162  Sum_probs=57.2

Q ss_pred             CceeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCc-----ceEEEEEEeccCCCCCeEEEEEEEc
Q psy7036          16 QLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTN-----KYLVALELDDVIETDAGLYKVKAKN   90 (254)
Q Consensus        16 ~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~i~~~~~~d~G~Y~C~~~~   90 (254)
                      +.+.+.+|++|+|.|.+. .|.+.+.|++++..+................     ....+|.|.+++.+|+|.|+|.+.|
T Consensus         3 ~~v~~~~G~sVtl~c~~~-~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~l~~~DsG~Y~c~~~n   81 (93)
T d1ccza1           3 QQIYGVVYGNVTFHVPSN-VPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESPN   81 (93)
T ss_dssp             EEEEEETTCCEEECCCCS-SCCSCEEEEETTEEEEEEETTEEEECGGGTTSEEECTTTCCEEECSCCGGGCEEEEEECTT
T ss_pred             cEEEEEECCCEEEEecCC-CCCcEEEEEEeccccceeeecceeeCCCccceEEEcCCeeEEEEEecChhhCEEEEEEEEC
Confidence            356788999999999874 6788999999987763221111111111000     0122799999999999999999987


Q ss_pred             CCCceEEEEEEEE
Q psy7036          91 KMGEVAASINLNF  103 (254)
Q Consensus        91 ~~~~~~~~~~l~v  103 (254)
                      ..+..  .+.|+|
T Consensus        82 ~~~t~--~~~l~V   92 (93)
T d1ccza1          82 ITDTM--KFFLYV   92 (93)
T ss_dssp             CCSCE--EEEEEE
T ss_pred             CCcEE--EEEEEE
Confidence            76544  355554

>d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.35  E-value=3.2e-13  Score=83.26  Aligned_cols=81  Identities=22%  Similarity=0.290  Sum_probs=59.4

Q ss_pred             ceeecCCCeEEEEEEE-eeCCCCceEEEeCCEEeeeCCc-----ceEEEeecCCcceEEEEEEeccCCCCCe---EEEEE
Q psy7036          17 LRQEDEGNRLIFECQL-LCNPKPDIVWFRGETQLSEDTR-----TVMKTTPIGTNKYLVALELDDVIETDAG---LYKVK   87 (254)
Q Consensus        17 ~~~v~~g~~v~l~C~~-~~~~~~~v~W~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~i~~~~~~d~G---~Y~C~   87 (254)
                      ..++.+|++++|.|.+ .|.|.|.+.|+|++..+.....     ..+....++      .|.|.+++..|+|   .|.|.
T Consensus        11 ~~t~~EG~~~~L~C~v~~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~------~L~i~~v~~~D~gd~g~Y~C~   84 (111)
T d1biha2          11 EKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDG------NLYFTIVTKEDVSDIYKYVCT   84 (111)
T ss_dssp             EECCBTTEEEEECCCCCEEESCCEEEEEEEETTSCGGGCCCCCCTTEEECTTS------CEEEEEECGGGCCSSEEEEEE
T ss_pred             cccccCCCeEEEEEEcccCCCCCEEEEEeCCccccccccceeeeeeecccccc------ccEEeeeEeeccCCceEEEEE
Confidence            3467899999999997 8899999999998765533221     112222222      6999999998877   79999


Q ss_pred             EEcCCCceEEEEEEEE
Q psy7036          88 AKNKMGEVAASINLNF  103 (254)
Q Consensus        88 ~~~~~~~~~~~~~l~v  103 (254)
                      |.|..|.......+.+
T Consensus        85 A~N~~g~~~~~~~~~~  100 (111)
T d1biha2          85 AKNAAVDEEVVLVEYE  100 (111)
T ss_dssp             EECTTCSSCEEEEEEE
T ss_pred             EEeCCCCceEEEEEEE
Confidence            9999998766554444

>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-2 (ICAM-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=2.7e-12  Score=78.45  Aligned_cols=84  Identities=14%  Similarity=0.146  Sum_probs=59.2

Q ss_pred             eeeecCCCeEEEEEEEee-CC--CCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCc
Q psy7036         121 IRQEDDGKRLLFECRIQA-DP--APTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGE  197 (254)
Q Consensus       121 ~~~~~~g~~~~l~C~~~~-~~--~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~  197 (254)
                      ...+.+|+.++|.|.+.| .|  .+.+.|++++..+.......  .........+.|.|...+.+|.|.|+|.|.|..+.
T Consensus        11 p~~v~~G~~v~l~C~v~g~~p~p~~~i~W~~~~~~i~~~~~~~--~~~~~~~~~s~l~~~~~~~d~g~~ytC~A~n~~~~   88 (106)
T d1zxqa1          11 PTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGK--AAPAPQEATATFNSTADREDGHRNFSCLAVLDLMS   88 (106)
T ss_dssp             SSEECTTSEEEEEEEECSCBCGGGEEEEEEETTEEEEEEECCS--STTCTTCEEEEEEEECCGGGGGCEEEEEEEEECGG
T ss_pred             CCEEeCCCEEEEEEEEeCcccCCCceEEEEcCCEEeeecccce--EeecccceeEEEEEeeehhcCCcEEEEEEEecCCC
Confidence            345778999999999986 33  45799999999875432211  11222234457888887888888999999999887


Q ss_pred             ceEEEEEEE
Q psy7036         198 SNATISLNF  206 (254)
Q Consensus       198 ~~~~~~~~v  206 (254)
                      ....+...+
T Consensus        89 ~~~~~~~~~   97 (106)
T d1zxqa1          89 RGGNIFHKH   97 (106)
T ss_dssp             GTCCEEEEE
T ss_pred             CCCeeEecc
Confidence            655555444

>d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.24  E-value=8.1e-12  Score=76.86  Aligned_cols=80  Identities=24%  Similarity=0.395  Sum_probs=59.7

Q ss_pred             eeecCCCeEEEEEEE-eeCCCCeEEEEECCEecccCC-----cceEEEcCCCCceeeEEEEccCCCCCce---eEEEEEE
Q psy7036         122 RQEDDGKRLLFECRI-QADPAPTVIWSHSGVQVKEDK-----RHKFSIDKDGHSYFASLEIIDVTIEDAG---KYKVTAK  192 (254)
Q Consensus       122 ~~~~~g~~~~l~C~~-~~~~~~~~~W~~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~i~~~~~~d~G---~y~C~~~  192 (254)
                      ..+.+|+.+.|.|.+ .|.|.|.+.|++++..+....     ........++     +|.|.+++..|+|   .|.|.|.
T Consensus        12 ~t~~EG~~~~L~C~v~~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~-----~L~i~~v~~~D~gd~g~Y~C~A~   86 (111)
T d1biha2          12 KTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDG-----NLYFTIVTKEDVSDIYKYVCTAK   86 (111)
T ss_dssp             ECCBTTEEEEECCCCCEEESCCEEEEEEEETTSCGGGCCCCCCTTEEECTTS-----CEEEEEECGGGCCSSEEEEEEEE
T ss_pred             ccccCCCeEEEEEEcccCCCCCEEEEEeCCccccccccceeeeeeecccccc-----ccEEeeeEeeccCCceEEEEEEE
Confidence            345689999999986 899999999999876653221     1223333343     7999999988876   7999999


Q ss_pred             cCCCcceEEEEEEE
Q psy7036         193 NELGESNATISLNF  206 (254)
Q Consensus       193 ~~~~~~~~~~~~~v  206 (254)
                      |..|.....+.+.+
T Consensus        87 N~~g~~~~~~~~~~  100 (111)
T d1biha2          87 NAAVDEEVVLVEYE  100 (111)
T ss_dssp             CTTCSSCEEEEEEE
T ss_pred             eCCCCceEEEEEEE
Confidence            99998877654443

>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.20  E-value=2.3e-11  Score=73.00  Aligned_cols=82  Identities=17%  Similarity=0.269  Sum_probs=56.6

Q ss_pred             ceeecCCCeEEEEEEEee-C-CCCceEEEeCCEEeeeCCcc--------eEEEeecCCcceEEEEEEeccCCCCCeEEEE
Q psy7036          17 LRQEDEGNRLIFECQLLC-N-PKPDIVWFRGETQLSEDTRT--------VMKTTPIGTNKYLVALELDDVIETDAGLYKV   86 (254)
Q Consensus        17 ~~~v~~g~~v~l~C~~~~-~-~~~~v~W~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C   86 (254)
                      .+....|++|+|.|.... . ....|.|++++..+..-...        +.....+      .+|.|.+++.+|+|.|+|
T Consensus         4 tV~G~~G~sV~L~~~~~~~~~~i~~I~W~~~~~~i~~~~~~~~~~~~~~~~~~~~n------gSL~I~nl~~~DsG~Y~c   77 (98)
T d1hnga1           4 TVWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILAN------GDLKIKNLTRDDSGTYNV   77 (98)
T ss_dssp             EEEEETTSCEEECCTTCCCCTTEEEEEEEETTEEEEEEETTSCCEESSTTEEECTT------SCEEESSCCGGGCEEEEE
T ss_pred             EEEEecCCCEEEECCCCCCccchheeeeeccccceeEEccCCccccCCCeEEECCC------ccEEEeCCCHHHCEEEEE
Confidence            456788999999996422 2 23469999998876321111        1111111      279999999999999999


Q ss_pred             EEEcCCCce--EEEEEEEEe
Q psy7036          87 KAKNKMGEV--AASINLNFS  104 (254)
Q Consensus        87 ~~~~~~~~~--~~~~~l~v~  104 (254)
                      .+.+..|..  ...+.|.|.
T Consensus        78 ~v~~~~g~~~~~~~~~L~V~   97 (98)
T d1hnga1          78 TVYSTNGTRILNKALDLRIL   97 (98)
T ss_dssp             EEEETTCCEEEEEEEEEEEE
T ss_pred             EEEeCCCCEEEEEEEEEEEE
Confidence            999888875  456666664

>d1l6za1 b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.20  E-value=1.6e-11  Score=74.87  Aligned_cols=80  Identities=16%  Similarity=0.253  Sum_probs=53.5

Q ss_pred             eeecCCCeEEEEEEEeeCCCCceEEEeCCEEee-----------------eCCcceEEEeecCCcceEEEEEEeccCCCC
Q psy7036          18 RQEDEGNRLIFECQLLCNPKPDIVWFRGETQLS-----------------EDTRTVMKTTPIGTNKYLVALELDDVIETD   80 (254)
Q Consensus        18 ~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d   80 (254)
                      ..+.+|++|+|.|.........+.|+|......                 .....+.....++      +|+|.+++.+|
T Consensus         9 ~~v~~G~~V~L~c~~~p~~~~~~~W~k~~~~~~~~~i~~y~~~~~~~~~~~~y~gR~~l~~ng------SL~I~~v~~~D   82 (107)
T d1l6za1           9 PQVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNG------SLLFQMITMKD   82 (107)
T ss_dssp             SSCCTTCCEEEEEESCCTTCSEEEEEESSCCSGGGEEEEECSTTCCEECCSSCCSSEEECTTS------CEEECSCCGGG
T ss_pred             CcccCCCCEEEEecCCCCCceEEEEEeCcccCCceeeEEEEcCCCccccCCcceeEEEEcccc------cEEEcCCCchh
Confidence            457899999999985444466899998543210                 0111233333222      79999999999


Q ss_pred             CeEEEEEEEcCCCc-eEEEEEEEE
Q psy7036          81 AGLYKVKAKNKMGE-VAASINLNF  103 (254)
Q Consensus        81 ~G~Y~C~~~~~~~~-~~~~~~l~v  103 (254)
                      +|.|+|.+.+..+. ....+.|+|
T Consensus        83 ~G~Y~c~v~~~~~~~~~~~v~L~V  106 (107)
T d1l6za1          83 MGVYTLDMTDENYRRTQATVRFHV  106 (107)
T ss_dssp             CEEEEEEEEETTEEECCCCEEECC
T ss_pred             CEEEEEEEEECCCCEEEEEEEEEE
Confidence            99999999876543 444555554

>d1nezg_ b.1.1.1 (G:) CD8 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.17  E-value=8.6e-11  Score=73.41  Aligned_cols=81  Identities=14%  Similarity=0.280  Sum_probs=56.5

Q ss_pred             CCeeEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeC--CE------Ee-ee-CC------------cceEEEeecCCc
Q psy7036           8 APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRG--ET------QL-SE-DT------------RTVMKTTPIGTN   65 (254)
Q Consensus         8 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~--~~------~~-~~-~~------------~~~~~~~~~~~~   65 (254)
                      +|.+.+.|....+.+|++|+|.|.+.+.....+.|||-  |.      .+ .. ..            ..++....  ..
T Consensus         1 a~~~~~~P~~~~~~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~--~~   78 (122)
T d1nezg_           1 APELRIFPKKMDAELGQKVDLVCEVLGSVSQGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLFSAMR--DT   78 (122)
T ss_dssp             CCEEEEESSCEEECTTCCEEEEEEEESCCSSCEEEEEEESSCSSCCCEEEEEECSSSCCEEECTTTTGGGTEEEEE--ET
T ss_pred             CCceEEcCCEEEECCCCCEEEEEEEcCccCCCEEEEEECCCCCcCceEEEEeeeccccceeeccCCCCCcEEEEEC--CC
Confidence            58899999999999999999999997777778999971  21      11 00 00            00111111  11


Q ss_pred             ceEEEEEEeccCCCCCeEEEEEEEc
Q psy7036          66 KYLVALELDDVIETDAGLYKVKAKN   90 (254)
Q Consensus        66 ~~~~~l~i~~~~~~d~G~Y~C~~~~   90 (254)
                      .....|.|.+++.+|+|.|.|.+..
T Consensus        79 ~~~~~L~I~~~~~~Dsg~YyCa~~~  103 (122)
T d1nezg_          79 NNKYVLTLNKFSKENEGYYFCSVIS  103 (122)
T ss_dssp             TTEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             CCEeEEEEcccccCCCEEEEeeEeC
Confidence            1235799999999999999998763

>d1a0ql1 b.1.1.1 (L:2-108) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=99.14  E-value=2e-10  Score=69.71  Aligned_cols=78  Identities=14%  Similarity=0.230  Sum_probs=53.0

Q ss_pred             eeEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeC---CEE-e--e------eCCcceEEEeecCCcceEEEEEEeccC
Q psy7036          10 SFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRG---ETQ-L--S------EDTRTVMKTTPIGTNKYLVALELDDVI   77 (254)
Q Consensus        10 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~---~~~-~--~------~~~~~~~~~~~~~~~~~~~~l~i~~~~   77 (254)
                      ++++.|..+.+.+|++|+|.|.........+.||+.   ..+ +  .      .....++.....   ...+.|.|.+++
T Consensus         2 qltQsP~~l~~~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~s---~~~~~L~I~~~~   78 (106)
T d1a0ql1           2 ELTQSPSSLSASLGGKVTITCKASQDIKKYIGWYQHKPGKQPRLLIHYTSTLLPGIPSRFRGSGS---GRDYSFSISNLE   78 (106)
T ss_dssp             CEEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEE---TTEEEEEECSCC
T ss_pred             ceECcCCEEEECCCCCEEEEEEcCCCCCCCeEEEECCCCCcEEEEEEccccccCCCCcceEeecC---CCEeeeEehhhc
Confidence            367788888999999999999986555556999982   111 1  0      111112222211   223489999999


Q ss_pred             CCCCeEEEEEEEc
Q psy7036          78 ETDAGLYKVKAKN   90 (254)
Q Consensus        78 ~~d~G~Y~C~~~~   90 (254)
                      ++|+|.|.|.+..
T Consensus        79 ~~DsA~YyCa~~~   91 (106)
T d1a0ql1          79 PEDIATYYCLQYY   91 (106)
T ss_dssp             GGGCSEEEEEECS
T ss_pred             ccCCEeEEEEEeC
Confidence            9999999998764

>d3bp5a1 b.1.1.1 (A:1-114) Programmed cell death protein 1, PD1, extracellular domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Programmed cell death protein 1, PD1, extracellular domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.13  E-value=5e-10  Score=69.01  Aligned_cols=78  Identities=23%  Similarity=0.301  Sum_probs=53.5

Q ss_pred             eEeCCCceeecCCCeEEEEEEEeeC-CCCceEEEeC--CE-E--e----------eeCCcceEEEeecCCcceEEEEEEe
Q psy7036          11 FTQKPQLRQEDEGNRLIFECQLLCN-PKPDIVWFRG--ET-Q--L----------SEDTRTVMKTTPIGTNKYLVALELD   74 (254)
Q Consensus        11 ~~~~~~~~~v~~g~~v~l~C~~~~~-~~~~v~W~~~--~~-~--~----------~~~~~~~~~~~~~~~~~~~~~l~i~   74 (254)
                      +++.|..+.+.+|++|+|.|...+. ....+.|||.  ++ +  +          ....++......   ......|.|.
T Consensus         2 vtqsP~~l~v~~G~~vtl~C~~~~~~~~~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~~~rf~~~~~~---~~~~~~L~I~   78 (114)
T d3bp5a1           2 LTFYPAWLTVSEGANATFTCSLSNWSEDLMLNWNRLSPSNQTEKQAAFSNGLSQPVQDARFQIIQLP---NRHDFHMNIL   78 (114)
T ss_dssp             EEEESSEEEEETTCCEEEEEEESCCCTTCEEEEEEECTTCCEEEEEEEETTEEEESSCTTEEEEECT---TSSEEEEEES
T ss_pred             ceECCCeEEECCCCCEEEEEEECCCCCcceEEEEEECCCCCCeeeEEeeeccccccccCcceEEEeC---CCCEEEEEEC
Confidence            5678889999999999999998643 3456889972  21 1  1          111222222221   2234579999


Q ss_pred             ccCCCCCeEEEEEEEcC
Q psy7036          75 DVIETDAGLYKVKAKNK   91 (254)
Q Consensus        75 ~~~~~d~G~Y~C~~~~~   91 (254)
                      +++++|+|.|.|.+...
T Consensus        79 ~~~~~Dsg~YyCa~~~~   95 (114)
T d3bp5a1          79 DTRRNDSGIYLCGAISL   95 (114)
T ss_dssp             SCCGGGCEEEEEEEECS
T ss_pred             ccCcCCCeEEEEEEEeC
Confidence            99999999999988754

>d2nxyb1 b.1.1.1 (B:1001-1097) CD4 V-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD4 V-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.11  E-value=3.3e-11  Score=72.39  Aligned_cols=74  Identities=9%  Similarity=0.147  Sum_probs=49.3

Q ss_pred             ceeecCCCeEEEEEEEeeCCCCceEEEeCCE--EeeeC----------CcceEEEeecCCcceEEEEEEeccCCCCCeEE
Q psy7036          17 LRQEDEGNRLIFECQLLCNPKPDIVWFRGET--QLSED----------TRTVMKTTPIGTNKYLVALELDDVIETDAGLY   84 (254)
Q Consensus        17 ~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~--~~~~~----------~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y   84 (254)
                      .+...+|++|+|+|.........+.|++...  .+...          ...++............+|.|.+++.+|+|.|
T Consensus         3 ~V~~~~G~svtL~C~~s~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~l~~~DsG~Y   82 (97)
T d2nxyb1           3 VVLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTY   82 (97)
T ss_dssp             EEEEETTSCEEECCBCSSSSCCCEEEEETTCCEEEEEETTEEEECSSTTGGGEECCGGGGGGTBCCEEECSCCGGGCEEE
T ss_pred             EEEEEcCCcEEEEEEEecCCCceEEEEEeCCceeeeecceeeeecCceeccceEEEeccCCCCEEEEEECCCChHHCEEE
Confidence            3567899999999998766677899998543  11111          11112111112223344799999999999999


Q ss_pred             EEEEEc
Q psy7036          85 KVKAKN   90 (254)
Q Consensus        85 ~C~~~~   90 (254)
                      .|.+.+
T Consensus        83 ~C~v~~   88 (97)
T d2nxyb1          83 ICEVED   88 (97)
T ss_dssp             EEEETT
T ss_pred             EEEEec
Confidence            999865

>d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car), domain 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Coxsackie virus and adenovirus receptor (Car), domain 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=4e-11  Score=75.63  Aligned_cols=89  Identities=18%  Similarity=0.329  Sum_probs=58.5

Q ss_pred             CceeecCCCeEEEEEEEeeCC----CCceEEEeCCE-------E-e--------e---eCCcceEEEeecCCcceEEEEE
Q psy7036          16 QLRQEDEGNRLIFECQLLCNP----KPDIVWFRGET-------Q-L--------S---EDTRTVMKTTPIGTNKYLVALE   72 (254)
Q Consensus        16 ~~~~v~~g~~v~l~C~~~~~~----~~~v~W~~~~~-------~-~--------~---~~~~~~~~~~~~~~~~~~~~l~   72 (254)
                      ..+.+.+|++++|.|.+...+    ...+.|++...       . +        .   .....+............++|+
T Consensus        12 ~~v~~~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~   91 (124)
T d1eaja_          12 EMIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDDYYPDLKGRVHFTSNDLKSGDASIN   91 (124)
T ss_dssp             EEEEEETTSCEEECCBEECCTTCCSCEEEEEEEEETTSSCCSEEEEEEETTEEECTTSSTTTTTEEECCSCGGGTBCCEE
T ss_pred             ceEEEECCCcEEEeEEEecccCCCCcEEEEEEEeCCCCcceeEEEEEEeCCccccccCcccccceEEEccCCCCCEEEEE
Confidence            446788999999999986432    23588986211       0 1        0   0111222222222223345799


Q ss_pred             EeccCCCCCeEEEEEEEcCCCceEEEEEEEEe
Q psy7036          73 LDDVIETDAGLYKVKAKNKMGEVAASINLNFS  104 (254)
Q Consensus        73 i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~  104 (254)
                      |.+++.+|+|.|.|.+.+..+.....+.|.|.
T Consensus        92 I~~v~~~D~G~Y~C~v~~~~~~~~~~~~L~V~  123 (124)
T d1eaja_          92 VTNLQLSDIGTYQCKVKKAPGVANKKIHLVVL  123 (124)
T ss_dssp             ECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             EcccEEccCEEEEEEEEECCCeEEeEEEEEEE
Confidence            99999999999999999888777777777764

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=1.3e-10  Score=69.16  Aligned_cols=74  Identities=19%  Similarity=0.233  Sum_probs=52.1

Q ss_pred             eeeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCc----------ceEEEcCCCCceeeEEEEccCCCCCceeEEEE
Q psy7036         121 IRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKR----------HKFSIDKDGHSYFASLEIIDVTIEDAGKYKVT  190 (254)
Q Consensus       121 ~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~----------~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~  190 (254)
                      .+....|++++|.|.. ..|.+.+.|++++..+.....          .+.......    .+|.|.+++.+|+|.|+|.
T Consensus         4 ~v~~~~G~sVtl~c~~-~~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~----~sL~I~~l~~~DsG~Y~c~   78 (93)
T d1ccza1           4 QIYGVVYGNVTFHVPS-NVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVS----GSLTIYNLTSSDEDEYEME   78 (93)
T ss_dssp             EEEEETTCCEEECCCC-SSCCSCEEEEETTEEEEEEETTEEEECGGGTTSEEECTTT----CCEEECSCCGGGCEEEEEE
T ss_pred             EEEEEECCCEEEEecC-CCCCcEEEEEEeccccceeeecceeeCCCccceEEEcCCe----eEEEEEecChhhCEEEEEE
Confidence            3456789999999986 467788999998876532111          111121111    3799999999999999999


Q ss_pred             EEcCCCcce
Q psy7036         191 AKNELGESN  199 (254)
Q Consensus       191 ~~~~~~~~~  199 (254)
                      +.|..+...
T Consensus        79 ~~n~~~t~~   87 (93)
T d1ccza1          79 SPNITDTMK   87 (93)
T ss_dssp             CTTCCSCEE
T ss_pred             EECCCcEEE
Confidence            987655444

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.09  E-value=1.4e-09  Score=68.50  Aligned_cols=88  Identities=18%  Similarity=0.231  Sum_probs=58.4

Q ss_pred             eeeecCCCeEEEEEEEeeCC---CCeEEEEECCEec-----------cc----CCcceEEEc-CCCCceeeEEEEccCCC
Q psy7036         121 IRQEDDGKRLLFECRIQADP---APTVIWSHSGVQV-----------KE----DKRHKFSID-KDGHSYFASLEIIDVTI  181 (254)
Q Consensus       121 ~~~~~~g~~~~l~C~~~~~~---~~~~~W~~~~~~~-----------~~----~~~~~~~~~-~~~~~~~~~l~i~~~~~  181 (254)
                      .+.+..|++++|.|......   ...+.|++.+...           ..    ....+.... .......++|.|.+++.
T Consensus        11 ~V~~~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v~~   90 (126)
T d1pkoa_          11 PIRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKESIGEGKVALRIQNVRF   90 (126)
T ss_dssp             CEEEETTSCEEEEEEEESCCCCTTSEEEEEEC--CCEEEEEETTEECGGGSCSTTTTSEEEECTTGGGTEEEEEESSCCG
T ss_pred             CEEEEcCCcEEEEEEEECcCCCCceEEEEeecCCcceEEEEEeccccccccccccceeEEEeeccccCCeEEEEEEEEch
Confidence            36777899999999976432   3458999864321           00    011111111 11112246899999999


Q ss_pred             CCceeEEEEEEcCCCcceEEEEEEEec
Q psy7036         182 EDAGKYKVTAKNELGESNATISLNFDS  208 (254)
Q Consensus       182 ~d~G~y~C~~~~~~~~~~~~~~~~v~~  208 (254)
                      +|+|.|+|.+.+..+.....+.|.|..
T Consensus        91 ~D~G~Y~C~v~~~~~~~~~~v~L~V~~  117 (126)
T d1pkoa_          91 SDEGGYTCFFRDHSYQEEAAVELKVED  117 (126)
T ss_dssp             GGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             hHCeEEEEEEEECCCEEEEEEEEEEeC
Confidence            999999999999888778888888874

>d1ospl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=99.07  E-value=8.8e-10  Score=66.90  Aligned_cols=78  Identities=12%  Similarity=0.167  Sum_probs=53.1

Q ss_pred             eEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeC--CE---Ee-------eeCCcceEEEeecCCcceEEEEEEeccCC
Q psy7036          11 FTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRG--ET---QL-------SEDTRTVMKTTPIGTNKYLVALELDDVIE   78 (254)
Q Consensus        11 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~--~~---~~-------~~~~~~~~~~~~~~~~~~~~~l~i~~~~~   78 (254)
                      +++.|..+.+.+|++|+|.|...+.....+.|||.  +.   .+       ......++.....   ...+.|.|.+++.
T Consensus         4 ~tQsP~~ltv~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~i~~~~~~~~~~~~~rfs~~~~---~~~~~L~I~~~~~   80 (107)
T d1ospl1           4 MSQSSSSFSVSLGDRVTITCKASEDIYSRLAWYQQKPGNAPRLLISGATSLETWVPSRFSGSDS---GKDYTLSITSLQT   80 (107)
T ss_dssp             EECCCSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEECS---SSSEEEEESSCCG
T ss_pred             EEeeCCEEEECCCCCEEEEEecCCCcccccEEEEcCCCccceeEEeeccccCCccccccceecC---CCeEEeEEccccc
Confidence            56778888999999999999986555456999982  21   11       1111122222222   2234899999999


Q ss_pred             CCCeEEEEEEEcC
Q psy7036          79 TDAGLYKVKAKNK   91 (254)
Q Consensus        79 ~d~G~Y~C~~~~~   91 (254)
                      +|+|.|.|.+...
T Consensus        81 ~Dsa~YyCa~~~~   93 (107)
T d1ospl1          81 EDVATYFCQQYWS   93 (107)
T ss_dssp             GGCSEEEEEECSS
T ss_pred             ccCCcEEEeeccC
Confidence            9999999987643

>d2cdea1 b.1.1.1 (A:2-115) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=99.06  E-value=3.8e-10  Score=69.66  Aligned_cols=79  Identities=15%  Similarity=0.298  Sum_probs=55.7

Q ss_pred             eeEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeCC-----EE-ee--------eCCcceEEEeecCCcceEEEEEEec
Q psy7036          10 SFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGE-----TQ-LS--------EDTRTVMKTTPIGTNKYLVALELDD   75 (254)
Q Consensus        10 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~-----~~-~~--------~~~~~~~~~~~~~~~~~~~~l~i~~   75 (254)
                      ++.+.|..+.+.+|++|+|.|.........+.||+..     .. +.        ...++...  . .......+|.|.+
T Consensus         2 ~V~Q~P~~~~~~~G~~vtL~C~~~~~~~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~~--~-~~~~~~~sL~i~~   78 (114)
T d2cdea1           2 QVEQSPQSLIILEGKNCTLQCNYTVSPFSNLRWYKQDTGRGPVSLTIMTFSENTKSNGRYTAT--L-DADTKQSSLHITA   78 (114)
T ss_dssp             CEEEECSEEEEETTCCCEEEEEECCSCCSEEEEEEECTTSCCCEEEEECSSCSCEEETTEEEC--B-CSSSSEEEEEECS
T ss_pred             ccEeeCCEEEEeCCCCEEEEEEEcCCCccCceEEEecCCCceEEeeeeeeeecccccCcccee--e-cCcccccccEEcc
Confidence            4667888999999999999999876566679999732     11 11        11122211  1 1223456899999


Q ss_pred             cCCCCCeEEEEEEEcC
Q psy7036          76 VIETDAGLYKVKAKNK   91 (254)
Q Consensus        76 ~~~~d~G~Y~C~~~~~   91 (254)
                      ++.+|+|.|.|.+...
T Consensus        79 ~~~~Dsg~Y~Ca~~~~   94 (114)
T d2cdea1          79 SQLSDSASYICVVSDR   94 (114)
T ss_dssp             CCGGGCSEEEEEEECS
T ss_pred             cChhhCcccceeeecC
Confidence            9999999999998764

>d1c5cl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=99.06  E-value=7.6e-10  Score=67.00  Aligned_cols=78  Identities=15%  Similarity=0.232  Sum_probs=53.3

Q ss_pred             eeEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeC--CEE---e-------eeCCcceEEEeecCCcceEEEEEEeccC
Q psy7036          10 SFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRG--ETQ---L-------SEDTRTVMKTTPIGTNKYLVALELDDVI   77 (254)
Q Consensus        10 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~--~~~---~-------~~~~~~~~~~~~~~~~~~~~~l~i~~~~   77 (254)
                      ++++.|..+.+.+|++|+|.|.........+.|||.  |+.   +       ......+......+   ....|.|.+++
T Consensus         3 ~ltQ~P~s~~~~~G~svtl~C~~s~~~~~~~~Wyrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~L~I~~l~   79 (107)
T d1c5cl1           3 QLTQSPSSLSASLGERVSLTCRTSQEISGYLSWLQQKPDGTIKRLIYDATKLDSGAPKRFSGSRSG---SDYSLTISSLE   79 (107)
T ss_dssp             CEEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTSCTTEEEEEET---TEEEEEESSCC
T ss_pred             CEEccCCEEEECCCCCEEEEEEeCCCCCCCEEEEEcCCCCcceeEEeccccccCCCCCceEecccC---CEEEEEEhhhc
Confidence            356788888999999999999987655667999972  221   1       01111122222111   13489999999


Q ss_pred             CCCCeEEEEEEEc
Q psy7036          78 ETDAGLYKVKAKN   90 (254)
Q Consensus        78 ~~d~G~Y~C~~~~   90 (254)
                      .+|+|.|.|.+.+
T Consensus        80 ~~Dsa~YyCa~~~   92 (107)
T d1c5cl1          80 SEDFADYYCLQYA   92 (107)
T ss_dssp             GGGCSEEEEEECS
T ss_pred             ccCCeEEEEecCc
Confidence            9999999998764

>d1olla1 b.1.1.4 (A:1-95) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=1.3e-09  Score=64.57  Aligned_cols=78  Identities=13%  Similarity=0.056  Sum_probs=56.1

Q ss_pred             CCeeEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEE
Q psy7036           8 APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVK   87 (254)
Q Consensus         8 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~   87 (254)
                      +|.+...|.. .|..|++|+|.|... .....+.|+|+|.........      .......+.+.|.+++..|+|.|+|.
T Consensus         4 KPsLsa~P~~-~V~~G~~VTL~C~~~-~~~~~f~L~k~g~~~~~~~~~------~~~~~~~a~F~i~~v~~~~~G~Y~C~   75 (95)
T d1olla1           4 KPFIWAEPHF-MVPKEKQVTICCQGN-YGAVEYQLHFEGSLFAVDRPK------PPERINKVKFYIPDMNSRMAGQYSCI   75 (95)
T ss_dssp             CCEEEEESCS-EEETTCCEEEEEECC-TTCCEEEEEETTEEEEEECCS------SCTTCCEEEEEESSCCGGGCEEEEEE
T ss_pred             CCEEEeeCCC-cccCCCcEEEEEecC-CCccEEEEEECCCCcceeEEc------cCCCccEEEEEEeeeecCCCceEEEE
Confidence            5888888866 477999999999875 456679999998754322111      00112234799999999999999999


Q ss_pred             EEcCCC
Q psy7036          88 AKNKMG   93 (254)
Q Consensus        88 ~~~~~~   93 (254)
                      ..+...
T Consensus        76 y~~~~~   81 (95)
T d1olla1          76 YRVGEL   81 (95)
T ss_dssp             EEETTE
T ss_pred             eCCCCC
Confidence            876543

>d2bnqd1 b.1.1.1 (D:2-114) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=99.05  E-value=5.5e-10  Score=68.81  Aligned_cols=80  Identities=19%  Similarity=0.277  Sum_probs=55.7

Q ss_pred             eeEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeC--CE---Ee---------eeCCcceEEEeecCCcceEEEEEEec
Q psy7036          10 SFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRG--ET---QL---------SEDTRTVMKTTPIGTNKYLVALELDD   75 (254)
Q Consensus        10 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~--~~---~~---------~~~~~~~~~~~~~~~~~~~~~l~i~~   75 (254)
                      .+++.|..+.+.+|++|+|+|...+.....+.|||.  |+   .+         ....+.......   ......|.|.+
T Consensus         2 ~V~Q~P~~v~v~~G~sv~L~C~~s~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~L~i~~   78 (113)
T d2bnqd1           2 EVTQIPAALSVPEGENLVLNCSFTDSAIYNLQWFRQDPGKGLTSLLLIQSSQREQTSGRLNASLDK---SSGRSTLYIAA   78 (113)
T ss_dssp             CEECSSSEEEEETTCCEEEEEEESCCCEEEEEEEEECTTSCEEEEEEEETTCCEEEETTEEEEEET---TTTEEEEEESS
T ss_pred             CcEeeCCEEEEcCCCCEEEEEEEecCcccCCeEEEeccccccceeeeeccceecccccceeeeecc---CCCEEEeeeec
Confidence            367788889999999999999987655567899982  21   11         111222222221   22355899999


Q ss_pred             cCCCCCeEEEEEEEcCC
Q psy7036          76 VIETDAGLYKVKAKNKM   92 (254)
Q Consensus        76 ~~~~d~G~Y~C~~~~~~   92 (254)
                      ++.+|+|.|.|.+....
T Consensus        79 ~~~~Dsg~YyCa~~~~~   95 (113)
T d2bnqd1          79 SQPGDSATYLCAVRPTS   95 (113)
T ss_dssp             CCGGGCEEEEEEEEESS
T ss_pred             CCCCCCcEEeEeEecCC
Confidence            99999999999987544

>d1i8ka_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=99.04  E-value=6.3e-10  Score=67.44  Aligned_cols=78  Identities=15%  Similarity=0.329  Sum_probs=52.8

Q ss_pred             eeEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeC--CEE---e-------eeCCcceEEEeecCCcceEEEEEEeccC
Q psy7036          10 SFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRG--ETQ---L-------SEDTRTVMKTTPIGTNKYLVALELDDVI   77 (254)
Q Consensus        10 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~--~~~---~-------~~~~~~~~~~~~~~~~~~~~~l~i~~~~   77 (254)
                      ++++.|..+.+.+|++|+|.|.........+.||+.  |+.   +       ......++.....+   ....|.|.+++
T Consensus         3 ~ltQsP~slsv~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~rfs~~~~~---~~~~L~I~~~~   79 (106)
T d1i8ka_           3 ELTQSPASLSVATGEKVTIRCMTSTDIDDDMNWYQQKPGEPPKFLISEGNTLRPGVPSRFSSSGTG---TDFVFTIENTL   79 (106)
T ss_dssp             CEEEECSEEECCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEET---TEEEEEESSCC
T ss_pred             CEEeeCCEEEECCCCCEEEEEEeCCCCCccEEEEeCCCCCceEEEEeccCccccCCCcceeEeCCC---CeeeecccCCc
Confidence            356778888999999999999986555567999973  221   1       11111122222111   23489999999


Q ss_pred             CCCCeEEEEEEEc
Q psy7036          78 ETDAGLYKVKAKN   90 (254)
Q Consensus        78 ~~d~G~Y~C~~~~   90 (254)
                      .+|+|.|.|.+..
T Consensus        80 ~~Dsa~YyCa~~~   92 (106)
T d1i8ka_          80 SEDVGDYYCLQSF   92 (106)
T ss_dssp             GGGCEEEEEEECS
T ss_pred             cccCEEEeEecCc
Confidence            9999999998654

>d1jhll_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=99.04  E-value=2e-09  Score=65.26  Aligned_cols=79  Identities=14%  Similarity=0.281  Sum_probs=53.3

Q ss_pred             eeEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeC--CE---Eee-------eCCcceEEEeecCCcceEEEEEEeccC
Q psy7036          10 SFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRG--ET---QLS-------EDTRTVMKTTPIGTNKYLVALELDDVI   77 (254)
Q Consensus        10 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~--~~---~~~-------~~~~~~~~~~~~~~~~~~~~l~i~~~~   77 (254)
                      ++++.|..+.+.+|++|+|.|.........+.||+.  +.   .+-       ............   .....|.|.+++
T Consensus         3 ~vtQ~P~~l~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~---~~~~~L~i~~l~   79 (108)
T d1jhll_           3 ELTQSPSYLVASPGETITINCRASKSISKSLAWYQEKPGKTNNLLIYSGSTLQSGIPSRFSGSGS---GTDFTLTISSLE   79 (108)
T ss_dssp             CEEEECSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEES---SSEEEEEECSCC
T ss_pred             cEEccCCeEEecCCCCEEEEEEccCCcCCceEEEEccccCCCeEEEEeeccccCCccccccccCC---CCEEEeEeeeeE
Confidence            356788888999999999999987555567999973  11   110       111111222222   123589999999


Q ss_pred             CCCCeEEEEEEEcC
Q psy7036          78 ETDAGLYKVKAKNK   91 (254)
Q Consensus        78 ~~d~G~Y~C~~~~~   91 (254)
                      .+|+|.|.|...+.
T Consensus        80 ~~Dsa~YyCA~~~~   93 (108)
T d1jhll_          80 PEDFAMYICQQHNE   93 (108)
T ss_dssp             TTCCSEEEEEECSS
T ss_pred             eccceEEEEeeCCC
Confidence            99999999976643

>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.03  E-value=5.8e-10  Score=66.75  Aligned_cols=81  Identities=25%  Similarity=0.300  Sum_probs=55.6

Q ss_pred             eeecCCCeEEEEEEEeeC--CCCeEEEEECCEecccC--------CcceEEEcCCCCceeeEEEEccCCCCCceeEEEEE
Q psy7036         122 RQEDDGKRLLFECRIQAD--PAPTVIWSHSGVQVKED--------KRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTA  191 (254)
Q Consensus       122 ~~~~~g~~~~l~C~~~~~--~~~~~~W~~~~~~~~~~--------~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~  191 (254)
                      +....|++++|.|.....  ....|.|++++..+...        ...+.....++     +|.|.+++.+|+|.|+|.+
T Consensus         5 V~G~~G~sV~L~~~~~~~~~~i~~I~W~~~~~~i~~~~~~~~~~~~~~~~~~~~ng-----SL~I~nl~~~DsG~Y~c~v   79 (98)
T d1hnga1           5 VWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANG-----DLKIKNLTRDDSGTYNVTV   79 (98)
T ss_dssp             EEEETTSCEEECCTTCCCCTTEEEEEEEETTEEEEEEETTSCCEESSTTEEECTTS-----CEEESSCCGGGCEEEEEEE
T ss_pred             EEEecCCCEEEECCCCCCccchheeeeeccccceeEEccCCccccCCCeEEECCCc-----cEEEeCCCHHHCEEEEEEE
Confidence            455679999999963222  22469999988765321        11122233333     7999999999999999999


Q ss_pred             EcCCCcc--eEEEEEEEe
Q psy7036         192 KNELGES--NATISLNFD  207 (254)
Q Consensus       192 ~~~~~~~--~~~~~~~v~  207 (254)
                      .+..|..  .+++.|.|.
T Consensus        80 ~~~~g~~~~~~~~~L~V~   97 (98)
T d1hnga1          80 YSTNGTRILNKALDLRIL   97 (98)
T ss_dssp             EETTCCEEEEEEEEEEEE
T ss_pred             EeCCCCEEEEEEEEEEEE
Confidence            9988876  455666553

>d1j1pl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=99.03  E-value=1.4e-09  Score=66.04  Aligned_cols=78  Identities=19%  Similarity=0.339  Sum_probs=53.1

Q ss_pred             eeEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeC--CEE---e-------eeCCcceEEEeecCCcceEEEEEEeccC
Q psy7036          10 SFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRG--ETQ---L-------SEDTRTVMKTTPIGTNKYLVALELDDVI   77 (254)
Q Consensus        10 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~--~~~---~-------~~~~~~~~~~~~~~~~~~~~~l~i~~~~   77 (254)
                      ++++.|..+.+.+|++|+|.|.........+.|||.  |+.   +       ......++.....+   ....|.|.+++
T Consensus         3 ~~tQ~p~~l~v~~G~~vtL~C~~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~fs~~~~~---~~~~L~I~~~~   79 (107)
T d1j1pl_           3 VLTQSPATLSVTPGNSVSLSCRASQSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGSG---TDFTLSINSVE   79 (107)
T ss_dssp             CEEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEET---TEEEEEESSCC
T ss_pred             CEECcCCeEEECCCCCEEEEEEecCCCCcceEEEEeCCCCccEEeeecccCCCceeCCcceecccC---CEEEEEEcccC
Confidence            356788889999999999999986555567999973  211   1       01111122222222   23589999999


Q ss_pred             CCCCeEEEEEEEc
Q psy7036          78 ETDAGLYKVKAKN   90 (254)
Q Consensus        78 ~~d~G~Y~C~~~~   90 (254)
                      .+|+|.|.|.+.+
T Consensus        80 ~~Dsa~YyCa~~~   92 (107)
T d1j1pl_          80 TEDFGMYFCQQAN   92 (107)
T ss_dssp             GGGCEEEEEEECS
T ss_pred             cCCCEEEEEEcCC
Confidence            9999999997654

>d1kcvl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=99.02  E-value=1.9e-09  Score=65.53  Aligned_cols=78  Identities=15%  Similarity=0.206  Sum_probs=52.9

Q ss_pred             eeEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeC--CE---Ee-------eeCCcceEEEeecCCcceEEEEEEeccC
Q psy7036          10 SFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRG--ET---QL-------SEDTRTVMKTTPIGTNKYLVALELDDVI   77 (254)
Q Consensus        10 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~--~~---~~-------~~~~~~~~~~~~~~~~~~~~~l~i~~~~   77 (254)
                      ++++.|..+.+.+|++|+|.|.........+.||+.  ++   .+       ......+......   .....|.|.+++
T Consensus         3 ~~tQsP~~l~v~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~---~~~~~L~I~~l~   79 (107)
T d1kcvl1           3 VMTQSPKSMGMSVGEAVTLNCKASENVGTYVSWYQQKPGQSPVLLIYGASNRYTGVPDRFTGSGS---ATDFTLTISSVQ   79 (107)
T ss_dssp             CEEESCSEEEEETTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEE---TTEEEEEESSCC
T ss_pred             CEECcCCEEeECCCCCEEEEEEecCCcCCceEEEEcccCCCCEEEEEecccccCCccceEEeecc---CCeeecEEHhhe
Confidence            356788888999999999999987655557999973  11   11       1111111211111   123489999999


Q ss_pred             CCCCeEEEEEEEc
Q psy7036          78 ETDAGLYKVKAKN   90 (254)
Q Consensus        78 ~~d~G~Y~C~~~~   90 (254)
                      .+|+|.|.|.+..
T Consensus        80 ~~DSa~YyCa~~~   92 (107)
T d1kcvl1          80 ADDDADYYCGQSY   92 (107)
T ss_dssp             GGGCEEEEEEECS
T ss_pred             ecCCceEEEEecC
Confidence            9999999998754

>d1vesa_ b.1.1.1 (A:) Novel antigen receptor 12Y-2 {Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor 12Y-2
species: Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]

Probab=99.01  E-value=2.5e-09  Score=65.65  Aligned_cols=78  Identities=24%  Similarity=0.352  Sum_probs=55.1

Q ss_pred             eeEeCCCceeecCCCeEEEEEEEeeC--CCCceEEEeC--CE----EeeeCCcceEEEeecCCcceEEEEEEeccCCCCC
Q psy7036          10 SFTQKPQLRQEDEGNRLIFECQLLCN--PKPDIVWFRG--ET----QLSEDTRTVMKTTPIGTNKYLVALELDDVIETDA   81 (254)
Q Consensus        10 ~~~~~~~~~~v~~g~~v~l~C~~~~~--~~~~v~W~~~--~~----~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~   81 (254)
                      .+++.|..+.+.+|++|+|+|...+.  ....+.||+.  +.    .+....++.......   .....|.|.+++.+|+
T Consensus         2 ~V~Q~P~s~~~~~G~svtL~C~~s~~~~~~~~~~Wyrq~~g~~~~~~~~~~~~~~~~~~~~---~~~~~L~I~~l~~~Ds   78 (113)
T d1vesa_           2 WVDQTPRTATKETGESLTINCVLRDASFELKDTGWYRTKLGSTNEQSISIGGRYVETVNKG---SKSFSLRISDLRVEDS   78 (113)
T ss_dssp             EEEEECSEEEECTTCCEEEEEEEESCSSCCCEEEEEEEETTCCCCEECCCBTTEEEEEETT---TTEEEEEECSCCGGGC
T ss_pred             ceEeeCCEEEEcCCCCEEEEEEECCCcccCCccceeeeeccccceeeeeecccccceeECC---CCceeeeecccccCCc
Confidence            46788999999999999999999653  3456899972  22    233333333332221   2234899999999999


Q ss_pred             eEEEEEEEc
Q psy7036          82 GLYKVKAKN   90 (254)
Q Consensus        82 G~Y~C~~~~   90 (254)
                      |.|.|.+..
T Consensus        79 a~YyCa~~~   87 (113)
T d1vesa_          79 GTYKCQAFY   87 (113)
T ss_dssp             EEEEEEEEE
T ss_pred             ceEeeeeec
Confidence            999998863

>d1xeda_ b.1.1.1 (A:) Polymeric-immunoglobulin receptor, PIGR {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Polymeric-immunoglobulin receptor, PIGR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=7.1e-10  Score=68.80  Aligned_cols=90  Identities=17%  Similarity=0.248  Sum_probs=58.3

Q ss_pred             eCCCceeecCCCeEEEEEEEeeC---CCCceEEEeCCE-----Ee-ee--------CCcceEEEeecCCcceEEEEEEec
Q psy7036          13 QKPQLRQEDEGNRLIFECQLLCN---PKPDIVWFRGET-----QL-SE--------DTRTVMKTTPIGTNKYLVALELDD   75 (254)
Q Consensus        13 ~~~~~~~v~~g~~v~l~C~~~~~---~~~~v~W~~~~~-----~~-~~--------~~~~~~~~~~~~~~~~~~~l~i~~   75 (254)
                      ..|+.+.+.+|++|+|.|.....   ....+.|+|...     .+ ..        ..+..+...   ......+|.|.+
T Consensus         4 t~P~~V~~~~G~svtL~C~y~~~~~~~~~~~~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~---~~~~~~sL~I~~   80 (116)
T d1xeda_           4 FGPEEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNF---PENGTFVVNIAQ   80 (116)
T ss_dssp             BCCSEEEEETTCCEEEEEECCCCHHHHHSCEEEEEC-----CEEEEESSSCBCTTTTTTEEEEEE---TTTTEEEEEECS
T ss_pred             cCCCEEEEcCCCCEEEEEEECCCCCccceeEEEEEcCCCCCcEEEEECcccccceecCCccEeee---CCCCEEEEEEhh
Confidence            36778889999999999987532   234578998431     11 00        112222222   223455899999


Q ss_pred             cCCCCCeEEEEEEEcCCCceEEEEEEEEec
Q psy7036          76 VIETDAGLYKVKAKNKMGEVAASINLNFSR  105 (254)
Q Consensus        76 ~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~  105 (254)
                      ++.+|+|.|.|.+..........+.|.|.+
T Consensus        81 l~~~DsG~Y~C~v~~~~~~~~~~v~L~V~~  110 (116)
T d1xeda_          81 LSQDDSGRYKCGLGINSRGLSFDVSLEVLE  110 (116)
T ss_dssp             CCGGGCEEEEEEESCGGGCCEEEEEEEEEC
T ss_pred             hCcCCCEEEEEEEEcCCCCceEeEEEEEEC
Confidence            999999999999875444445567777764

>d1sq2n_ b.1.1.1 (N:) Novel antigen receptor (against lysozyme) {Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor (against lysozyme)
species: Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]

Probab=99.01  E-value=2.4e-09  Score=65.42  Aligned_cols=78  Identities=22%  Similarity=0.394  Sum_probs=54.8

Q ss_pred             eEeCCCceeecCCCeEEEEEEEeeC--CCCceEEEeC------CEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCe
Q psy7036          11 FTQKPQLRQEDEGNRLIFECQLLCN--PKPDIVWFRG------ETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAG   82 (254)
Q Consensus        11 ~~~~~~~~~v~~g~~v~l~C~~~~~--~~~~v~W~~~------~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G   82 (254)
                      +.+.|..+.+.+|++|+|.|...+.  ....+.||+.      ...+....++......   ......|.|.+++.+|+|
T Consensus         2 V~Q~P~s~t~~~G~svtl~C~~s~~s~~~~~i~WYrq~~g~~~~~~~~~~gr~~~~~~~---~~~~~~L~I~~l~~~Dsa   78 (112)
T d1sq2n_           2 VDQTPRSVTKETGESLTINCVLRDASYALGSTCWYRKKSGEGNEESISKGGRYVETVNS---GSKSFSLRINDLTVEDGG   78 (112)
T ss_dssp             EEEECSEEEECTTCCEEEEEEECSCSSCCCCEEEEEEETTSCCCEECCCBTTEEEEEET---TTTEEEEEECSCCGGGCE
T ss_pred             CEecCCEEEEcCCCCEEEEEEECCCcccCCceEEEEeeccceeeeeeccCCcEeeEEec---CCceeeeEecCCcCccCE
Confidence            5678888899999999999998642  3567999972      1233333333332221   122358999999999999


Q ss_pred             EEEEEEEcC
Q psy7036          83 LYKVKAKNK   91 (254)
Q Consensus        83 ~Y~C~~~~~   91 (254)
                      .|.|.+...
T Consensus        79 ~YyCA~~~~   87 (112)
T d1sq2n_          79 TYRCGLGVA   87 (112)
T ss_dssp             EEEEEECBT
T ss_pred             EEeEEEecC
Confidence            999987643

>d1lp9e1 b.1.1.1 (E:0-117) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=99.01  E-value=9.7e-10  Score=67.82  Aligned_cols=79  Identities=19%  Similarity=0.228  Sum_probs=54.1

Q ss_pred             eeEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeC--C---EEe-e--------eCCcceEEEeecCCcceEEEEEEec
Q psy7036          10 SFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRG--E---TQL-S--------EDTRTVMKTTPIGTNKYLVALELDD   75 (254)
Q Consensus        10 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~--~---~~~-~--------~~~~~~~~~~~~~~~~~~~~l~i~~   75 (254)
                      .+++.|..+.+.+|++|+|.|.........+.|||.  +   +.+ .        ...++......   ......|.|.+
T Consensus         3 ~V~Q~~~~v~v~~G~~vtL~C~~~~~~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~L~I~~   79 (115)
T d1lp9e1           3 SVTQTEGLVTLTEGLPVMLNCTYQSTYSPFLFWYVQHLNEAPKLLLKSFTDNKRPEHQGFHATLHK---SSSSFHLQKSS   79 (115)
T ss_dssp             EEEECCSEEEEETTSCEEECEEEECSSSCCEEEEEECTTSCCEEEEESCSSTTCCCCSSCEECCBG---GGTBCCEEESS
T ss_pred             CEEcCCCeEEECCCCCEEEEEEEeCCCcCCeeEEEeCCCCceeeeeeeeeccCCcceeeeeeeccC---CCCeEEeeccc
Confidence            356778888999999999999987666677999973  2   111 0        01122222111   11233699999


Q ss_pred             cCCCCCeEEEEEEEcC
Q psy7036          76 VIETDAGLYKVKAKNK   91 (254)
Q Consensus        76 ~~~~d~G~Y~C~~~~~   91 (254)
                      ++++|+|.|.|.+...
T Consensus        80 ~~~~Dsg~YyCa~~~~   95 (115)
T d1lp9e1          80 AQLSDSALYYCALFLA   95 (115)
T ss_dssp             CCGGGCEEEEEEEEEC
T ss_pred             cccccCccceEEEEcC
Confidence            9999999999987654

>d1i9ea_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=99.00  E-value=1.2e-09  Score=67.50  Aligned_cols=79  Identities=18%  Similarity=0.191  Sum_probs=52.5

Q ss_pred             eeEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeC--C---EEee-e---------CCcceEEEeecCCcceEEEEEEe
Q psy7036          10 SFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRG--E---TQLS-E---------DTRTVMKTTPIGTNKYLVALELD   74 (254)
Q Consensus        10 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~--~---~~~~-~---------~~~~~~~~~~~~~~~~~~~l~i~   74 (254)
                      .+++.|..+.+.+|++|+|.|.........+.||+-  +   ..+. .         ..+........   .....|.|.
T Consensus         2 sV~Q~~~~v~v~~G~svtl~C~~~~~~~~~~~Wyrq~pg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~---~~~~~L~I~   78 (115)
T d1i9ea_           2 SVTQPDARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGLQLLLKYYSGDPVVQGVNGFEAEFSKS---NSSFHLRKA   78 (115)
T ss_dssp             EEECCCSEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBTT---TTBCCEEES
T ss_pred             CEEcCCCeEEECCCCCEEEEEEEcCCCCCCEEEEEECCCCceeeeeeeccceeccccCcceeEEEeCc---CCEEEEecc
Confidence            356677788999999999999987555567889972  2   1111 0         11112211111   123379999


Q ss_pred             ccCCCCCeEEEEEEEcC
Q psy7036          75 DVIETDAGLYKVKAKNK   91 (254)
Q Consensus        75 ~~~~~d~G~Y~C~~~~~   91 (254)
                      +++.+|+|.|.|.+...
T Consensus        79 ~~~~~Dsg~YyCa~~~~   95 (115)
T d1i9ea_          79 SVHWSDSAVYFCAVSGF   95 (115)
T ss_dssp             SCCGGGCEEEEEEEEET
T ss_pred             cccccccceecccccCC
Confidence            99999999999987643

>d1j8hd1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=99.00  E-value=1.4e-09  Score=67.12  Aligned_cols=79  Identities=16%  Similarity=0.180  Sum_probs=53.8

Q ss_pred             eeEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeC--C---EEe-e---------eCCcceEEEeecCCcceEEEEEEe
Q psy7036          10 SFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRG--E---TQL-S---------EDTRTVMKTTPIGTNKYLVALELD   74 (254)
Q Consensus        10 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~--~---~~~-~---------~~~~~~~~~~~~~~~~~~~~l~i~   74 (254)
                      .+++.|..+.+.+|++|+|+|.........+.||+-  +   +.+ .         ...++.......   .....|.|.
T Consensus         2 ~vtQ~p~~v~~~~G~~vtl~C~~s~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~---~~~~~L~I~   78 (115)
T d1j8hd1           2 SVTQLGSHVSVSEGALVLLRCNYSSSVPPYLFWYVQYPNQGLQLLLKYTSAATLVKGINGFEAEFKKS---ETSFHLTKP   78 (115)
T ss_dssp             EEECSCSEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBGG---GTBCCEEES
T ss_pred             CEEcCCCeEEEcCCCCEEEEEEeCCCCceeEEEEEccCCCcceeeeEEeecccccccCCCCEEEECCC---CCEEEEeec
Confidence            356778889999999999999987555567999972  2   111 0         111222221111   122369999


Q ss_pred             ccCCCCCeEEEEEEEcC
Q psy7036          75 DVIETDAGLYKVKAKNK   91 (254)
Q Consensus        75 ~~~~~d~G~Y~C~~~~~   91 (254)
                      +++.+|+|.|.|.+...
T Consensus        79 ~~~~~Dsa~YyCa~~~~   95 (115)
T d1j8hd1          79 SAHMSDAAEYFCAVSES   95 (115)
T ss_dssp             SCCGGGCEEEEEEEESS
T ss_pred             cccccCCccceeeecCC
Confidence            99999999999998754

>d1tvda_ b.1.1.1 (A:) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=98.99  E-value=4.5e-09  Score=64.85  Aligned_cols=80  Identities=18%  Similarity=0.267  Sum_probs=54.2

Q ss_pred             eeEeCCCceeecCCCeEEEEEEEeeC-CCCceEEEe--CCE-E--e-ee-----------CCcceEEEeecCCcceEEEE
Q psy7036          10 SFTQKPQLRQEDEGNRLIFECQLLCN-PKPDIVWFR--GET-Q--L-SE-----------DTRTVMKTTPIGTNKYLVAL   71 (254)
Q Consensus        10 ~~~~~~~~~~v~~g~~v~l~C~~~~~-~~~~v~W~~--~~~-~--~-~~-----------~~~~~~~~~~~~~~~~~~~l   71 (254)
                      ++++.|..+.+.+|++|+|.|...+. ....+.|||  .|. +  + ..           ..++.....   .......|
T Consensus         2 ~VtQ~p~~~~~~~G~~vtL~C~~~~~~~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~rf~~~~~---~~~~~~~L   78 (116)
T d1tvda_           2 KVTQSSPDQTVASGSEVVLLCTYDTVYSNPDLFWYRIRPDYSFQFVFYGDDSRSEGADFTQGRFSVKHI---LTQKAFHL   78 (116)
T ss_dssp             EEECCSCCEEEETTCCEEECCEEECCSSSCCEEEEEECTTSCEEEEEEECSSCEEECGGGTTTEEEEEE---GGGTEEEE
T ss_pred             CEEccCCCEEEcCCCCEEEEEEEcCCccCCcEEEEEeCCCCceEEeeecccccccccCccceEEEEEec---CceeEEee
Confidence            46778888999999999999998543 456799997  221 1  1 10           112222111   12234589


Q ss_pred             EEeccCCCCCeEEEEEEEcCC
Q psy7036          72 ELDDVIETDAGLYKVKAKNKM   92 (254)
Q Consensus        72 ~i~~~~~~d~G~Y~C~~~~~~   92 (254)
                      .|.+++.+|+|.|.|.+....
T Consensus        79 ~I~~~~~~Dsg~YyCa~~~~~   99 (116)
T d1tvda_          79 VISPVRTEDSATYYCAFTLPP   99 (116)
T ss_dssp             EESSCCGGGCEEEEEEEECTT
T ss_pred             eecCccccccccceeeEecCC
Confidence            999999999999999887544

>d1mqkl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.99  E-value=2.2e-09  Score=65.25  Aligned_cols=78  Identities=17%  Similarity=0.289  Sum_probs=53.1

Q ss_pred             eeEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeC--CE---Ee-e------eCCcceEEEeecCCcceEEEEEEeccC
Q psy7036          10 SFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRG--ET---QL-S------EDTRTVMKTTPIGTNKYLVALELDDVI   77 (254)
Q Consensus        10 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~--~~---~~-~------~~~~~~~~~~~~~~~~~~~~l~i~~~~   77 (254)
                      ++++.|..+.+.+|++|+|.|.........+.||+.  ++   .+ .      .....++.....   .....|.|.+++
T Consensus         3 ~ltQsP~~l~~~~G~svtL~C~~s~~~~~~i~WYrQ~pg~~p~~li~~~~~~~~~~~~~fs~~~~---~~~~~L~I~~~~   79 (109)
T d1mqkl_           3 ELTQTPVSLSASVGETVTITCRASENIYSYLAWYQQKQGKSPQFLVYNAKTLGEGVPSRFSGSGS---GTQFSLKINSLL   79 (109)
T ss_dssp             CEEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEE---TTEEEEEESSCC
T ss_pred             CEECcCCEEEECCCCCEEEEEEeCCCcCcccceeeccccCCCeEEEEeeccccCCcCCCEEEecc---CCEEEEEEcccc
Confidence            356778889999999999999986555556999982  11   11 0      111112222211   224589999999


Q ss_pred             CCCCeEEEEEEEc
Q psy7036          78 ETDAGLYKVKAKN   90 (254)
Q Consensus        78 ~~d~G~Y~C~~~~   90 (254)
                      .+|+|.|.|.+..
T Consensus        80 ~~DSa~YyCA~~~   92 (109)
T d1mqkl_          80 PEDFGSYYCQHHY   92 (109)
T ss_dssp             GGGCEEEEEEECS
T ss_pred             ccCCeeEEEeeeC
Confidence            9999999998764

>d1op3k1 b.1.1.1 (K:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=98.99  E-value=3.1e-09  Score=64.37  Aligned_cols=77  Identities=13%  Similarity=0.226  Sum_probs=52.9

Q ss_pred             eEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeCC-----EEee-------eCCcceEEEeecCCcceEEEEEEeccCC
Q psy7036          11 FTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGE-----TQLS-------EDTRTVMKTTPIGTNKYLVALELDDVIE   78 (254)
Q Consensus        11 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~-----~~~~-------~~~~~~~~~~~~~~~~~~~~l~i~~~~~   78 (254)
                      +++.|..+.+.+|++|+|.|.........+.||+..     +.+-       .....++.....   .....|.|.+++.
T Consensus         3 ltQ~P~sl~~~~G~svtL~C~~~~~~~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~f~~~~~---~~~~~L~I~~~~~   79 (106)
T d1op3k1           3 MTQSPSTLSASVGDTITITCRASQSIETWLAWYQQKPGKAPKLLIYKASTLKTGVPSRFSGSGS---GTEFTLTISGLQF   79 (106)
T ss_dssp             EEEECSEEEECTTCEEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEE---TTEEEEEEESCCG
T ss_pred             EeCcCCeEEECCCCCEEEEEEeCCCCCCcEEEEecCCCCCCEEEEEccccCCCCcCCceeeecc---CCEEEEEEccccc
Confidence            467888999999999999999865555669999732     2221       111112222221   2234799999999


Q ss_pred             CCCeEEEEEEEc
Q psy7036          79 TDAGLYKVKAKN   90 (254)
Q Consensus        79 ~d~G~Y~C~~~~   90 (254)
                      +|+|.|.|.+..
T Consensus        80 ~Dsa~YyCa~~~   91 (106)
T d1op3k1          80 DDFATYHCQHYA   91 (106)
T ss_dssp             GGCSEEEEEEEC
T ss_pred             cCCCcEeeeeCC
Confidence            999999998764

>d1neua_ b.1.1.1 (A:) Myelin membrane adhesion molecule P0 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin membrane adhesion molecule P0
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.99  E-value=3e-09  Score=66.21  Aligned_cols=93  Identities=10%  Similarity=0.112  Sum_probs=56.8

Q ss_pred             eEeCCCceeecCCCeEEEEEEEeeC----CCCceEEEeC--CE----Eee----------eC--CcceEEEeecCCcceE
Q psy7036          11 FTQKPQLRQEDEGNRLIFECQLLCN----PKPDIVWFRG--ET----QLS----------ED--TRTVMKTTPIGTNKYL   68 (254)
Q Consensus        11 ~~~~~~~~~v~~g~~v~l~C~~~~~----~~~~v~W~~~--~~----~~~----------~~--~~~~~~~~~~~~~~~~   68 (254)
                      ++..|..+.+..|++|+|.|.....    ....+.|++.  +.    .+.          ..  ...++..... .....
T Consensus         2 vv~~p~~v~a~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~-~~~~~   80 (119)
T d1neua_           2 VVYTDREVYGAVGSQVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYIDEVGTFKERIQWVGD-PSWKD   80 (119)
T ss_dssp             EEECCSEEEEETTSCEEECCEEECSSCCCSCCEEEEEEEETTCCCCEEEEEEETTEEEECSSSTTTTCEEECCB-GGGTB
T ss_pred             EEcCCCeEEEeeCCCEEEEEEEEecCCCCccEEEEEEEecccCCceeEEEEEeecccccccCccceeEEEEEEE-CCCCE
Confidence            4567888899999999999997531    2347899862  11    110          00  1112222111 11223


Q ss_pred             EEEEEeccCCCCCeEEEEEEEcCCC--ceEEEEEEEEe
Q psy7036          69 VALELDDVIETDAGLYKVKAKNKMG--EVAASINLNFS  104 (254)
Q Consensus        69 ~~l~i~~~~~~d~G~Y~C~~~~~~~--~~~~~~~l~v~  104 (254)
                      ++|.|.+++..|+|.|.|.+.+..+  .....+.|.|.
T Consensus        81 ~sL~I~~v~~~DsG~Y~C~v~~~~~~~~~~~~v~L~V~  118 (119)
T d1neua_          81 GSIVIHNLDYSDNGTFTCDVKNPPDIVGKTSQVTLYVF  118 (119)
T ss_dssp             CCEEECSCCGGGCEEEEEEEEC----CCEEEEEEEEEE
T ss_pred             EEEEECCCChHHCEEEEEEEEECCCcCceEEEEEEEEE
Confidence            4799999999999999999987543  23445666664

>d1tjgl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=98.99  E-value=2.5e-09  Score=64.85  Aligned_cols=78  Identities=15%  Similarity=0.277  Sum_probs=54.0

Q ss_pred             eeEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeC--C---EEee-------eCCcceEEEeecCCcceEEEEEEeccC
Q psy7036          10 SFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRG--E---TQLS-------EDTRTVMKTTPIGTNKYLVALELDDVI   77 (254)
Q Consensus        10 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~--~---~~~~-------~~~~~~~~~~~~~~~~~~~~l~i~~~~   77 (254)
                      ++++.|..+.+.+|++|+|.|.........+.||+.  |   ..+-       .....++.....   .....|.|.+++
T Consensus         3 ~~tQ~P~sl~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~---~~~~~L~I~~l~   79 (107)
T d1tjgl1           3 QLTQSPSSLSASVGDRITITCRASQGVTSALAWYRQKPGSPPQLLIYDASSLESGVPSRFSGSGS---GTEFTLTISTLR   79 (107)
T ss_dssp             CEEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEE---TTEEEEEESSCC
T ss_pred             cEEeeCCEEEECCCCCEEEEEEECCCCCccEEEEeccCCccceEEEeecccccCCCCcceEEecc---CCEEEEEeccce
Confidence            467889999999999999999987555668999973  1   1121       111112222211   234589999999


Q ss_pred             CCCCeEEEEEEEc
Q psy7036          78 ETDAGLYKVKAKN   90 (254)
Q Consensus        78 ~~d~G~Y~C~~~~   90 (254)
                      .+|+|.|.|....
T Consensus        80 ~~DsA~YyCa~~~   92 (107)
T d1tjgl1          80 PEDFATYYCQQLH   92 (107)
T ss_dssp             GGGCSEEEEEECS
T ss_pred             eCcCceEEEEECc
Confidence            9999999997654

>d1ucta1 b.1.1.4 (A:2-100) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.99  E-value=4.9e-10  Score=67.26  Aligned_cols=81  Identities=11%  Similarity=0.011  Sum_probs=54.5

Q ss_pred             CCCeeEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEE
Q psy7036           7 FAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKV   86 (254)
Q Consensus         7 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C   86 (254)
                      ..|.+...|.. .|..|++|+|.|... .+...+.|+|++...........    .......+.+.|.+++..|+|.|+|
T Consensus         6 pkPsLsa~P~~-~V~~G~~VTL~C~~~-~~~~~f~l~k~g~~~~~~~~~~~----~~~~~~~a~F~l~~vt~~~~G~Y~C   79 (99)
T d1ucta1           6 PMPFISAKSSP-VIPLDGSVKIQCQAI-REAYLTQLMIIKNSTYREIGRRL----KFWNETDPEFVIDHMDANKAGRYQC   79 (99)
T ss_dssp             CCCCEEESSCS-EEETTCCEEEEECCC-TTCSEEEEEEEETTEEEECSEEC----C----CCCEEEECSCCGGGCEEEEE
T ss_pred             CCCEEEecCCC-ceeCCCeEEEEEcCC-CCCcEEEEEECCCcCceeccccc----cCCCCceEEEEecCCCHHHCceEEE
Confidence            36788888876 588999999999875 55668999987642111111000    0011112268999999999999999


Q ss_pred             EEEcCCC
Q psy7036          87 KAKNKMG   93 (254)
Q Consensus        87 ~~~~~~~   93 (254)
                      ...+...
T Consensus        80 ~y~~~~~   86 (99)
T d1ucta1          80 QYRIGHY   86 (99)
T ss_dssp             EEEETTT
T ss_pred             EEECCCc
Confidence            9887654

>d1mexl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.98  E-value=2.8e-09  Score=64.63  Aligned_cols=78  Identities=21%  Similarity=0.327  Sum_probs=52.4

Q ss_pred             eeEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeC--CE---Eee-------eCCcceEEEeecCCcceEEEEEEeccC
Q psy7036          10 SFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRG--ET---QLS-------EDTRTVMKTTPIGTNKYLVALELDDVI   77 (254)
Q Consensus        10 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~--~~---~~~-------~~~~~~~~~~~~~~~~~~~~l~i~~~~   77 (254)
                      ++++.|..+.+.+|++|+|.|.........+.|||.  |.   .+.       .....++.....+   ....|.|.+++
T Consensus         3 ~ltQ~p~~l~~~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~rfs~~~~~---~~~~L~I~~~~   79 (107)
T d1mexl1           3 VMTQSQKFMSTSLGNRVSVTCKASQNVGTNVAWFQQKPGQSPKTLIYSASYRYSGVPDRFTGSGSG---TDFTLTINNVQ   79 (107)
T ss_dssp             CEECCCSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEET---TEEEEEESSCC
T ss_pred             cEEcCCCeEEECCCCCEEEEEEeCCCCCCceEEEeccCCcccEEEEEeccccccccCCCeeecCCC---Ceeeeeechhh
Confidence            356788888999999999999986554557999972  21   111       1111122222211   23479999999


Q ss_pred             CCCCeEEEEEEEc
Q psy7036          78 ETDAGLYKVKAKN   90 (254)
Q Consensus        78 ~~d~G~Y~C~~~~   90 (254)
                      ++|++.|.|.+..
T Consensus        80 ~~DsA~YyCa~~~   92 (107)
T d1mexl1          80 SEDLAEYFCQQYN   92 (107)
T ss_dssp             GGGCSEEEEEECS
T ss_pred             eecceeEEEeECC
Confidence            9999999998653

>d2esve1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.97  E-value=3.9e-09  Score=64.62  Aligned_cols=78  Identities=18%  Similarity=0.353  Sum_probs=50.5

Q ss_pred             eEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeC--CE---Ee---------eeC--CcceEEEeecCCcceEEEEEEe
Q psy7036          11 FTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRG--ET---QL---------SED--TRTVMKTTPIGTNKYLVALELD   74 (254)
Q Consensus        11 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~--~~---~~---------~~~--~~~~~~~~~~~~~~~~~~l~i~   74 (254)
                      +++.|....+.+|++|+|.|... .....+.|||.  |+   .+         ...  ...++....  .....+.|.|.
T Consensus         2 VtQ~P~~~~~~~G~svtl~C~~~-~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~f~~~~--~~~~~~~L~i~   78 (111)
T d2esve1           2 VTQFPSHSVIEKGQTVTLRCDPI-SGHDNLYWYRRVMGKEIKFLLHFVKESKQDESGMPNNRFLAER--TGGTYSTLKVQ   78 (111)
T ss_dssp             CEEECSEEEEETTCCEEEEEECC-TTCSEEEEEEEETTSCEEEEEEEETTEEEECTTCCSTTEEEEC--TTSSSEEEEES
T ss_pred             cEECCCEEEECCCCCEEEEEEEC-CCCceEEEEEEccCCcceecceecccCcccccCCCCccEEEEc--CCCCEEEEEEC
Confidence            35678888899999999999854 33457899973  21   11         000  011121111  12223489999


Q ss_pred             ccCCCCCeEEEEEEEcC
Q psy7036          75 DVIETDAGLYKVKAKNK   91 (254)
Q Consensus        75 ~~~~~d~G~Y~C~~~~~   91 (254)
                      +++.+|+|.|.|.+...
T Consensus        79 ~~~~~Dsa~YyCa~~~~   95 (111)
T d2esve1          79 PAELEDSGVYFCASSQD   95 (111)
T ss_dssp             SCCGGGCEEEEEEEESS
T ss_pred             CcccCCCceEEEeeeCC
Confidence            99999999999987643

>d1bd2d1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.97  E-value=6.1e-09  Score=63.75  Aligned_cols=78  Identities=17%  Similarity=0.226  Sum_probs=53.8

Q ss_pred             eeEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeC--CE---Eee---------eCCcceEEEeecCCcceEEEEEEec
Q psy7036          10 SFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRG--ET---QLS---------EDTRTVMKTTPIGTNKYLVALELDD   75 (254)
Q Consensus        10 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~--~~---~~~---------~~~~~~~~~~~~~~~~~~~~l~i~~   75 (254)
                      .+.+.|..+.+.+|++|+|.|.........+.||+.  |+   .+-         ...++.....   .......|.|.+
T Consensus         2 ~v~Q~p~s~~~~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~---~~~~~~~L~I~~   78 (111)
T d1bd2d1           2 QVKQNSPSLSVQEGRISILNCDYTNSMFDYFLWYKKYPAEGPTFLISISSIKDKNADGRFTVFLN---KSAKHLSLHIVP   78 (111)
T ss_dssp             CEECCCSEEEEETTSCEEEEEEECCTTCCEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEE---TTTTEEEEEESS
T ss_pred             ceEccCCEEEEcCCCCEEEEEEeCCCCCCeEEEEEECCCCcceeeeeeeceeccccCCcceEEEE---ccCCEEEEEECC
Confidence            356778888899999999999986655567899972  21   110         1122222222   122356899999


Q ss_pred             cCCCCCeEEEEEEEc
Q psy7036          76 VIETDAGLYKVKAKN   90 (254)
Q Consensus        76 ~~~~d~G~Y~C~~~~   90 (254)
                      ++.+|+|.|.|.+..
T Consensus        79 ~~~~Dsa~YyCa~~~   93 (111)
T d1bd2d1          79 SQPGDSAVYFCAAME   93 (111)
T ss_dssp             CCGGGCEEEEEEEES
T ss_pred             CcccccEEEEeeccC
Confidence            999999999998874

>d2ak4d1 b.1.1.1 (D:1-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.95  E-value=2.6e-09  Score=65.84  Aligned_cols=80  Identities=11%  Similarity=0.118  Sum_probs=53.4

Q ss_pred             eeEeCCCceeecCCCeEEEEEEEeeC-CCCceEEEeC--CE---Eee----------eCCcceEEEeecCCcceEEEEEE
Q psy7036          10 SFTQKPQLRQEDEGNRLIFECQLLCN-PKPDIVWFRG--ET---QLS----------EDTRTVMKTTPIGTNKYLVALEL   73 (254)
Q Consensus        10 ~~~~~~~~~~v~~g~~v~l~C~~~~~-~~~~v~W~~~--~~---~~~----------~~~~~~~~~~~~~~~~~~~~l~i   73 (254)
                      .+++.|..+.+.+|++|+|.|..... ....+.||+.  +.   .+-          ...+.......   ......|.|
T Consensus         2 ~VtQ~~~~v~v~~G~~VtL~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~L~I   78 (114)
T d2ak4d1           2 KVTQAQTEISVVEKEDVTLDCVYETRDTTYYLFWYKQPPSGELVFLIRRNSFDEQNEISGRYSWNFQK---STSSFNFTI   78 (114)
T ss_dssp             EEECCCCEEEEETTCCEEECCEEECSCSSCEEEEEEECTTCCCEEEEEEETTSCSEEEETTEEEEEET---TTTEEEEEE
T ss_pred             cEEecCCeEEEeCCCCEEEEEEEcCCCcCccEEEEEccccCcceEeeeEeeeeecCCCCcceEEEEcC---CCCEEEEee
Confidence            35677888899999999999987543 3446889982  22   110          11122222221   223458999


Q ss_pred             eccCCCCCeEEEEEEEcCC
Q psy7036          74 DDVIETDAGLYKVKAKNKM   92 (254)
Q Consensus        74 ~~~~~~d~G~Y~C~~~~~~   92 (254)
                      .+++.+|+|.|.|.+....
T Consensus        79 ~~~~~~Dsg~YyCa~~~~~   97 (114)
T d2ak4d1          79 TASQVVDSAVYFCALSGFY   97 (114)
T ss_dssp             SSCCGGGCEEEEEEEECSB
T ss_pred             cccccccCCCceEeCCCCC
Confidence            9999999999999876544

>d2ij0c1 b.1.1.1 (C:1-117) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.95  E-value=2.1e-09  Score=66.55  Aligned_cols=80  Identities=19%  Similarity=0.372  Sum_probs=53.9

Q ss_pred             eeEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeC--CEE---ee----------eC--CcceEEEeecCCcceEEEEE
Q psy7036          10 SFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRG--ETQ---LS----------ED--TRTVMKTTPIGTNKYLVALE   72 (254)
Q Consensus        10 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~--~~~---~~----------~~--~~~~~~~~~~~~~~~~~~l~   72 (254)
                      .+++.|....+.+|++|+|.|...+.....+.|||.  |+.   +.          ..  ...++....  .......|.
T Consensus         3 ~v~Q~P~~~~~~~G~~v~L~C~~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~f~~~~--~~~~~~~L~   80 (118)
T d2ij0c1           3 VVSQHPSMVIVKSGTSVKIECRSLDTNIHTMFWYRQFPKQSLMLMATSHQGFNAIYEQGVVKDKFLINH--ASPTLSTLT   80 (118)
T ss_dssp             CEEEECSEEEECTTCCEEEEEEECSSCCSEEEEEEECTTSCEEEEEEEETTSCCEECTTCCTTTEEEEE--CSSSEEEEE
T ss_pred             cEEEcCCeEEEcCCCCEEEEEEEcCCcccEEEEEEEcccccceeeeeccccccceeccccccccceeec--ccccccccc
Confidence            366778888999999999999987655667999982  221   10          00  011121111  122244799


Q ss_pred             EeccCCCCCeEEEEEEEcC
Q psy7036          73 LDDVIETDAGLYKVKAKNK   91 (254)
Q Consensus        73 i~~~~~~d~G~Y~C~~~~~   91 (254)
                      |.+++.+|+|.|.|.+...
T Consensus        81 i~~~~~~Dsa~YyCa~~~~   99 (118)
T d2ij0c1          81 VTSAHPEDSGFYVCSALAG   99 (118)
T ss_dssp             ECSCCGGGCEEEEEEEECS
T ss_pred             ccccccccCceEEEEEecC
Confidence            9999999999999988643

>d1akjd_ b.1.1.1 (D:) CD8 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.94  E-value=3.6e-09  Score=65.09  Aligned_cols=79  Identities=22%  Similarity=0.349  Sum_probs=53.4

Q ss_pred             eeEeCCCceeecCCCeEEEEEEEeeC-CCCceEEEeCC----E----EeeeC----------CcceEEEeecCCcceEEE
Q psy7036          10 SFTQKPQLRQEDEGNRLIFECQLLCN-PKPDIVWFRGE----T----QLSED----------TRTVMKTTPIGTNKYLVA   70 (254)
Q Consensus        10 ~~~~~~~~~~v~~g~~v~l~C~~~~~-~~~~v~W~~~~----~----~~~~~----------~~~~~~~~~~~~~~~~~~   70 (254)
                      ++.+.|.+..+.+|++|+|.|.+.+. ....+.|||..    .    .+...          .+.++......   ....
T Consensus         2 q~~~sP~~~t~~~G~~vtL~C~~~~~~~~~~i~WyrQ~~g~~~~~~~~i~~~~~~~~~~~~~~~~rfs~~~~~---~~~~   78 (114)
T d1akjd_           2 QFRVSPLDRTWNLGETVELKCQVLLSNPTSGCSWLFQPRGAAASPTFLLYLSQNKPKAAEGLDTQRFSGKRLG---DTFV   78 (114)
T ss_dssp             CEEEECCSCCCCTTCCEEEEEEECCSSCCSCEEEEEECSSTTCCCEEEEEESSSCCEECTTCCTTTEEEEEET---TEEE
T ss_pred             CeeECCCcEeccCCCcEEEEEEeCCCcCCCCEEEEEECCCCCcEEEEEEecCCCeeEcCCCCCCcEEEEECCC---CChh
Confidence            57788999999999999999998653 34568999822    1    11110          11122222211   1347


Q ss_pred             EEEeccCCCCCeEEEEEEEcC
Q psy7036          71 LELDDVIETDAGLYKVKAKNK   91 (254)
Q Consensus        71 l~i~~~~~~d~G~Y~C~~~~~   91 (254)
                      |.|.+++.+|+|.|.|.+...
T Consensus        79 L~I~~l~~~Dsg~YyCa~~~~   99 (114)
T d1akjd_          79 LTLSDFRRENEGYYFCSALSN   99 (114)
T ss_dssp             EEESSCCGGGCEEEEEEEEET
T ss_pred             cEEccCCCCCCEEEeEeEcCC
Confidence            999999999999999988743

>d1u3ha1 b.1.1.1 (A:2-116) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.94  E-value=1.5e-09  Score=66.50  Aligned_cols=77  Identities=22%  Similarity=0.280  Sum_probs=52.3

Q ss_pred             eEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeC--CE---Eee---------eCCcceEEEeecCCcceEEEEEEecc
Q psy7036          11 FTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRG--ET---QLS---------EDTRTVMKTTPIGTNKYLVALELDDV   76 (254)
Q Consensus        11 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~--~~---~~~---------~~~~~~~~~~~~~~~~~~~~l~i~~~   76 (254)
                      +.+.|..+.+.+|++|+|+|.........+.||+.  |.   .+.         ...+......   .......|.|.++
T Consensus         2 V~Q~P~~~~~~~G~~vtl~C~~~~~~~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~~~~~~~~---~~~~~~~L~I~~~   78 (110)
T d1u3ha1           2 VRQSPQSLTVWEGETAILNCSYENSAFDYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFN---KREKKLSLHIADS   78 (110)
T ss_dssp             EECSCSSEEEETTSCEEEEEEECCTTEEEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEE---TGGGEEEEEESSC
T ss_pred             cEecCCEEEEcCCCCEEEEEEecCCCCcEEEEEeeccccceeeeeeeccccccccccceeEEEC---CCCCeeEeEeccC
Confidence            46678888899999999999986544456899973  21   110         1112222211   1223458999999


Q ss_pred             CCCCCeEEEEEEEc
Q psy7036          77 IETDAGLYKVKAKN   90 (254)
Q Consensus        77 ~~~d~G~Y~C~~~~   90 (254)
                      +.+|+|.|.|.+..
T Consensus        79 ~~~Dsa~YyCa~~~   92 (110)
T d1u3ha1          79 QPGDSATYFCAASA   92 (110)
T ss_dssp             CTTSCSEEEECCEE
T ss_pred             CCCCceeEeeeecC
Confidence            99999999998763

>d1d5il1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.94  E-value=5.3e-09  Score=63.40  Aligned_cols=78  Identities=18%  Similarity=0.316  Sum_probs=52.7

Q ss_pred             eeEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeC--C---EEee-------eCCcceEEEeecCCcceEEEEEEeccC
Q psy7036          10 SFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRG--E---TQLS-------EDTRTVMKTTPIGTNKYLVALELDDVI   77 (254)
Q Consensus        10 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~--~---~~~~-------~~~~~~~~~~~~~~~~~~~~l~i~~~~   77 (254)
                      ++++.|..+.+.+|++|+|.|.........+.||+.  +   ..+.       .....++.....+   ....|.|.+++
T Consensus         3 ~~tQ~P~sl~~~~G~svtl~C~~s~~~~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~rf~~~~~~---~~~~L~I~~~~   79 (107)
T d1d5il1           3 KMTQSPSSMYASLGERVTITCKASQDINSYLSWFQQKPGKSPKTLIYRANRLVDGVPSRFSGSGSG---QDYSLTISSLE   79 (107)
T ss_dssp             CEEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEET---TEEEEEESSCC
T ss_pred             CEEeeCCEEEECCCCCEEEEEEcCCCCCCccceeEeccccCeEEEEEeccccccCcCCceeecccC---CEEEccccccC
Confidence            356778888999999999999986555666889973  1   1111       1111122222221   23489999999


Q ss_pred             CCCCeEEEEEEEc
Q psy7036          78 ETDAGLYKVKAKN   90 (254)
Q Consensus        78 ~~d~G~Y~C~~~~   90 (254)
                      .+|+|.|.|....
T Consensus        80 ~~Dsa~YyCa~~~   92 (107)
T d1d5il1          80 YEDMGIYYCLQYD   92 (107)
T ss_dssp             GGGCEEEEEEECS
T ss_pred             CcCCEEEEeeecc
Confidence            9999999997654

>d1ogad1 b.1.1.1 (D:3-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.94  E-value=5.2e-09  Score=64.38  Aligned_cols=90  Identities=20%  Similarity=0.340  Sum_probs=58.9

Q ss_pred             eEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeC--CE---Ee---------eeCCcceEEEeecCCcceEEEEEEecc
Q psy7036          11 FTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRG--ET---QL---------SEDTRTVMKTTPIGTNKYLVALELDDV   76 (254)
Q Consensus        11 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~--~~---~~---------~~~~~~~~~~~~~~~~~~~~~l~i~~~   76 (254)
                      +++.|..+.+.+|++|+|.|...+ ....+.||+.  |+   .+         ....++.....   .......|.|.++
T Consensus         3 l~Q~P~~~~~~~G~svtl~C~~s~-~~~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~~~~~~~---~~~~~~~L~I~~~   78 (115)
T d1ogad1           3 LEQSPQFLSIQEGENLTVYCNSSS-VFSSLQWYRQEPGEGPVLLVTVVTGGEVKKLKRLTFQFG---DARKDSSLHITAA   78 (115)
T ss_dssp             CEEECSEEEEETTCCEEEEEECSS-CCSCEEEEEECTTSCCEEEEEECSTTCEEEETTEEEEEC---TTSSEEEEEESSC
T ss_pred             eEeCCCeEEECCCCCEEEEEEECC-CCceEEEEecCCCCceeeeeeeeecccceeecccccccc---cccceeeeeecCC
Confidence            567788889999999999999764 3447999972  11   11         11122222222   2234568999999


Q ss_pred             CCCCCeEEEEEEEcCCCce--EEEEEEEEe
Q psy7036          77 IETDAGLYKVKAKNKMGEV--AASINLNFS  104 (254)
Q Consensus        77 ~~~d~G~Y~C~~~~~~~~~--~~~~~l~v~  104 (254)
                      +.+|+|.|.|.+....+..  -....|.|.
T Consensus        79 ~~~Dsa~YyCa~~~~~~~~~FG~GT~LtV~  108 (115)
T d1ogad1          79 QPGDTGLYLCAGAGSQGNLIFGKGTKLSVK  108 (115)
T ss_dssp             CGGGCEEEEEEEECTTSSEEECCCEEEEEE
T ss_pred             CccceeeEcccccCCCCCcEECCCEEEEEe
Confidence            9999999999887544332  234556664

>d1bwwa_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=98.93  E-value=5.7e-09  Score=63.58  Aligned_cols=78  Identities=15%  Similarity=0.255  Sum_probs=52.8

Q ss_pred             eeEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeC--C---EEee-------eCCcceEEEeecCCcceEEEEEEeccC
Q psy7036          10 SFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRG--E---TQLS-------EDTRTVMKTTPIGTNKYLVALELDDVI   77 (254)
Q Consensus        10 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~--~---~~~~-------~~~~~~~~~~~~~~~~~~~~l~i~~~~   77 (254)
                      ++++.|..+.+.+|++|+|.|...+.....+.||+.  +   +.+.       .....++.....+   ....|.|.+++
T Consensus         5 ~ltQsP~~l~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~fs~~~~~---~~~~L~I~~l~   81 (109)
T d1bwwa_           5 QMTQSPSSLSASVGDRVTITCQASQDIIKYLNWYQQKPGKAPKLLIYEASNLQAGVPSRFSGSGSG---TDYTFTISSLQ   81 (109)
T ss_dssp             CEEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEET---TEEEEEESSCC
T ss_pred             eEEeeCCEEEECCCCCEEEEEEecCCCCCcceEeeeccCCCCEEEEEecccCCCCCCCCEEeeCCC---CEeEEEEeece
Confidence            456778888999999999999987655567899972  1   1121       1111122222111   23479999999


Q ss_pred             CCCCeEEEEEEEc
Q psy7036          78 ETDAGLYKVKAKN   90 (254)
Q Consensus        78 ~~d~G~Y~C~~~~   90 (254)
                      .+|+|.|.|.+..
T Consensus        82 ~~Dsa~YyCA~~~   94 (109)
T d1bwwa_          82 PEDIATYYCQQYQ   94 (109)
T ss_dssp             GGGCEEEEEEECS
T ss_pred             eCcCceEEEeecC
Confidence            9999999998764

>d1yqvl1 b.1.1.1 (L:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.91  E-value=6.7e-09  Score=62.68  Aligned_cols=76  Identities=13%  Similarity=0.271  Sum_probs=50.2

Q ss_pred             eEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeCC-----EEee-------eCCcceEEEeecCCcceEEEEEEeccCC
Q psy7036          11 FTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGE-----TQLS-------EDTRTVMKTTPIGTNKYLVALELDDVIE   78 (254)
Q Consensus        11 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~-----~~~~-------~~~~~~~~~~~~~~~~~~~~l~i~~~~~   78 (254)
                      +++.|..+.+.+|++|+|.|.... ....+.||+..     ..+.       ......+.....   .....|.|.+++.
T Consensus         3 vtQsP~~l~~~~G~~vtl~C~~s~-~~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~~f~~~~~---~~~~~L~I~~~~~   78 (104)
T d1yqvl1           3 LTQSPAIMSASPGEKVTMTCSASS-SVNYMYWYQQKSGTSPKRWIYDTSKLASGVPVRFSGSGS---GTSYSLTISSMET   78 (104)
T ss_dssp             EEEESSEEEECTTCCEEEEEEESS-CCSCCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEE---TTEEEEEESSCCG
T ss_pred             EeCcCCeEEECCCCCEEEEEEeCC-CCCccEEEEeeccCceEEEEecccccCCCcCceEEEecC---CCEEEEEecccCc
Confidence            467888899999999999998743 34458999731     1111       111112221111   2245899999999


Q ss_pred             CCCeEEEEEEEc
Q psy7036          79 TDAGLYKVKAKN   90 (254)
Q Consensus        79 ~d~G~Y~C~~~~   90 (254)
                      +|+|.|.|....
T Consensus        79 ~Dsa~YyCa~~~   90 (104)
T d1yqvl1          79 EDAATYYCQQWG   90 (104)
T ss_dssp             GGCEEEEEEECS
T ss_pred             ccCCeEEEEecC
Confidence            999999997643

>d1kgce1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.90  E-value=7.5e-09  Score=63.46  Aligned_cols=77  Identities=12%  Similarity=0.340  Sum_probs=50.2

Q ss_pred             eEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeC--CE---Ee---------eeC--CcceEEEeecCCcceEEEEEEe
Q psy7036          11 FTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRG--ET---QL---------SED--TRTVMKTTPIGTNKYLVALELD   74 (254)
Q Consensus        11 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~--~~---~~---------~~~--~~~~~~~~~~~~~~~~~~l~i~   74 (254)
                      +++.|....+.+|++++|.|... .....+.|||.  ++   .+         ...  ...++....  .......|.|.
T Consensus         2 VtQ~P~~~~~~~G~svtl~C~~~-~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~L~I~   78 (112)
T d1kgce1           2 VSQSPRYKVAKRGQDVALRCDPI-SGHVSLFWYQQALGQGPEFLTYFQNEAQLDKSGLPSDRFFAER--PEGSVSTLKIQ   78 (112)
T ss_dssp             CEEECSEEEEETTCCEEEEEECC-TTCCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEEC--TTSSCEEEEES
T ss_pred             eEECCCeEEECCCCCEEEEEEEC-CCCCEEEeeeeecccceEEeeeeccCcccccCCCCCCceeeEC--CcCCEEEEEEC
Confidence            35678888899999999999864 34567999982  11   11         000  011111111  12223589999


Q ss_pred             ccCCCCCeEEEEEEEc
Q psy7036          75 DVIETDAGLYKVKAKN   90 (254)
Q Consensus        75 ~~~~~d~G~Y~C~~~~   90 (254)
                      +++++|+|.|.|.+..
T Consensus        79 ~~~~~Dsa~YyCa~~~   94 (112)
T d1kgce1          79 RTQQEDSAVYLCASSL   94 (112)
T ss_dssp             SCCGGGCEEEEEEEES
T ss_pred             CCCcCCCEEEEEeeeC
Confidence            9999999999998864

>d3cx5k1 b.1.1.1 (K:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.90  E-value=1.7e-09  Score=65.63  Aligned_cols=75  Identities=16%  Similarity=0.238  Sum_probs=51.9

Q ss_pred             eeEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeC--CEE---ee---------eCCcceEEEeecCCcceEEEEEEec
Q psy7036          10 SFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRG--ETQ---LS---------EDTRTVMKTTPIGTNKYLVALELDD   75 (254)
Q Consensus        10 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~--~~~---~~---------~~~~~~~~~~~~~~~~~~~~l~i~~   75 (254)
                      ++++.|..+.+.+|++|+|+|.........+.||+.  |+.   +-         ...++....  .   .....|.|.+
T Consensus         3 ~ltQsP~s~~~~~G~~vtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~--~---~~~~~L~I~~   77 (107)
T d3cx5k1           3 ELTQTPVSLAASLGDRVTISCRASQDINNFLNWYQQKPDGTIKLLIYYTSRLHAGVPSRFSGSG--S---GTDYSLTISN   77 (107)
T ss_dssp             CEEEESTTCCBCSSSCCEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTCCCEE--E---TTEEEEECSC
T ss_pred             CEECcCCEEEECCCCCEEEEEEcCCCcCCCeEEEEcCCCCcceEEEEeecccCCCcCCCEEEEc--c---CCEEEEEEeE
Confidence            456778888999999999999986555567999973  211   10         111222211  1   1234899999


Q ss_pred             cCCCCCeEEEEEEE
Q psy7036          76 VIETDAGLYKVKAK   89 (254)
Q Consensus        76 ~~~~d~G~Y~C~~~   89 (254)
                      ++.+|+|.|.|...
T Consensus        78 ~~~~Dsa~YyCa~~   91 (107)
T d3cx5k1          78 LEPEDIATYFCQHH   91 (107)
T ss_dssp             CCSCCCSEEEEEEC
T ss_pred             eeecCCCcEEeeeC
Confidence            99999999999765

>d1hkfa_ b.1.1.1 (A:) NK cell activating receptor NKP44 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: NK cell activating receptor NKP44
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.89  E-value=1.1e-08  Score=62.29  Aligned_cols=75  Identities=19%  Similarity=0.267  Sum_probs=48.3

Q ss_pred             CCceeecCCCeEEEEEEEeeC--CCCceEEEeCC---E--Ee-e--------eCCcceEEEeecCCcceEEEEEEeccCC
Q psy7036          15 PQLRQEDEGNRLIFECQLLCN--PKPDIVWFRGE---T--QL-S--------EDTRTVMKTTPIGTNKYLVALELDDVIE   78 (254)
Q Consensus        15 ~~~~~v~~g~~v~l~C~~~~~--~~~~v~W~~~~---~--~~-~--------~~~~~~~~~~~~~~~~~~~~l~i~~~~~   78 (254)
                      ++.+.+.+|++|+|.|.....  ....+.|||..   .  .+ .        ...+..+...   .......|.|.+++.
T Consensus         3 ~~~v~~~~G~svtl~C~~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~---~~~~~~~L~I~~l~~   79 (108)
T d1hkfa_           3 AQVLQSVAGQTLTVRCQYPPTGSLYEKKGWCKEASALVCIRLVTSSKPRTMAWTSRFTIWDD---PDAGFFTVTMTDLRE   79 (108)
T ss_dssp             CEEEEECTTCCEEEEEECCCCTTCCCEEEEEEEEETTEEEEEEEECSTTCCBCSTTEEEEEE---TTTTEEEEEECSCCG
T ss_pred             CEEEEEcCCCCEEEEEEECCCCCCCCEEEEEEeCCCCCcEEeeeccCccccceeeeEeeeee---CCCCEEEEEEhhhCC
Confidence            455678999999999987532  23457899732   1  11 1        1112222211   223346899999999


Q ss_pred             CCCeEEEEEEEcCC
Q psy7036          79 TDAGLYKVKAKNKM   92 (254)
Q Consensus        79 ~d~G~Y~C~~~~~~   92 (254)
                      +|+|.|.|.+....
T Consensus        80 ~DsG~Y~C~v~~~~   93 (108)
T d1hkfa_          80 EDSGHYWCRIYRPS   93 (108)
T ss_dssp             GGCEEEEEEEECTT
T ss_pred             CCCEEEEEEEecCC
Confidence            99999999987543

>d1ac6a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.89  E-value=6e-09  Score=63.63  Aligned_cols=80  Identities=18%  Similarity=0.183  Sum_probs=53.4

Q ss_pred             eeEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeC--CE---Eee---------eCCcceEEEeecCCcceEEEEEEec
Q psy7036          10 SFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRG--ET---QLS---------EDTRTVMKTTPIGTNKYLVALELDD   75 (254)
Q Consensus        10 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~--~~---~~~---------~~~~~~~~~~~~~~~~~~~~l~i~~   75 (254)
                      .+++.|..+.+.+|++|+|.|.........+.|||.  |+   .+.         ...++.......   .....|.|.+
T Consensus         2 sVtQ~p~~~~~~~G~~vtl~C~~~~~~~~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~f~~~~~~~---~~~~~L~i~~   78 (110)
T d1ac6a_           2 SVTQTEGQVALSEEDFLTIHCNYSASGYPALFWYVQYPGEGPQFLFRASRDKEKGSSRGFEATYNKE---ATSFHLQKAS   78 (110)
T ss_dssp             EEEECCSEEEEETTEEEEECEEEECSSCCEEEEEEECTTSCCEEEEEECSTTCEEEETTEEEECBTT---TTBCCEEEEE
T ss_pred             ceEeCCCeEEECCCCCEEEEEEecCCCCcceEEEEcCCCCceEEeeeeeeecccCCCCceeeeecCC---CCEEeeeecC
Confidence            356788888999999999999986544556999982  21   111         111222221111   1234799999


Q ss_pred             cCCCCCeEEEEEEEcCC
Q psy7036          76 VIETDAGLYKVKAKNKM   92 (254)
Q Consensus        76 ~~~~d~G~Y~C~~~~~~   92 (254)
                      +..+|+|.|.|.+....
T Consensus        79 ~~~~Dsa~YyCA~~~~~   95 (110)
T d1ac6a_          79 VQESDSAVYYCALSGGN   95 (110)
T ss_dssp             ECGGGCEEEEEEEEETT
T ss_pred             cCcCCCcccceeecCCC
Confidence            99999999999886543

>d1j05a_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=98.86  E-value=9.7e-09  Score=62.69  Aligned_cols=79  Identities=19%  Similarity=0.233  Sum_probs=52.0

Q ss_pred             eeEeCCCceeecCCCeEEEEEEEeeC----CCCceEEEeC--CE---Eee-------eCCcceEEEeecCCcceEEEEEE
Q psy7036          10 SFTQKPQLRQEDEGNRLIFECQLLCN----PKPDIVWFRG--ET---QLS-------EDTRTVMKTTPIGTNKYLVALEL   73 (254)
Q Consensus        10 ~~~~~~~~~~v~~g~~v~l~C~~~~~----~~~~v~W~~~--~~---~~~-------~~~~~~~~~~~~~~~~~~~~l~i   73 (254)
                      ++++.|..+.+.+|++|+|.|.....    ....+.||+.  |+   .+-       .....+.....   ......|.|
T Consensus         3 ~ltQsP~~l~v~~G~svtl~C~~s~s~~~~~~~~~~WYrq~~g~~p~~liy~~~~~~~~~~~~~~~~~---~~~~~~L~I   79 (111)
T d1j05a_           3 VLTQSPASLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTG---SRTDFTLII   79 (111)
T ss_dssp             CEEEECSEEECCTTSCEEEEEEESSCCBSSSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEC---SSSEEEEEE
T ss_pred             CEEccCCEEEECCCCCEEEEEEeccCCccCCceeEEEEEccCCCCCEEEEEeeccccCCCCCcEEEec---CCCEEEEEE
Confidence            35677888889999999999987432    2334999973  32   111       11112222222   223458999


Q ss_pred             eccCCCCCeEEEEEEEcC
Q psy7036          74 DDVIETDAGLYKVKAKNK   91 (254)
Q Consensus        74 ~~~~~~d~G~Y~C~~~~~   91 (254)
                      .+++.+|+|.|.|.+.+.
T Consensus        80 ~~~~~~Dsa~YyCa~~~~   97 (111)
T d1j05a_          80 DPVEADDVATYYCQQTNE   97 (111)
T ss_dssp             SSCCGGGCEEEEEEECSS
T ss_pred             cccccccCccEEEeecCC
Confidence            999999999999987643

>d1fo0a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.86  E-value=4.8e-09  Score=64.73  Aligned_cols=78  Identities=12%  Similarity=0.171  Sum_probs=52.5

Q ss_pred             eEeCCCceeecCCCeEEEEEEEee-CCCCceEEEeC--C-EE---ee---------eCCcceEEEeecCCcceEEEEEEe
Q psy7036          11 FTQKPQLRQEDEGNRLIFECQLLC-NPKPDIVWFRG--E-TQ---LS---------EDTRTVMKTTPIGTNKYLVALELD   74 (254)
Q Consensus        11 ~~~~~~~~~v~~g~~v~l~C~~~~-~~~~~v~W~~~--~-~~---~~---------~~~~~~~~~~~~~~~~~~~~l~i~   74 (254)
                      +++.|..+.+.+|++|+|.|.... .....+.|||.  + .+   +.         ...++.......   .....|.|.
T Consensus         2 VtQ~p~~v~~~~G~~Vtl~C~~~~~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~---~~~~~L~I~   78 (115)
T d1fo0a_           2 VTQTQTSISVMEKTTVTMDCVYETQDSSYFLFWYKQTASGEIVFLIRQDSYKKENATVGHYSLNFQKP---KSSIGLIIT   78 (115)
T ss_dssp             EECCCCEEEEETTCCEEECCEECCCCSSCEEEEEEECTTCCEEEEEEEETTCCSCCEETTEEEEEEGG---GTEEEEEEC
T ss_pred             eEccCCEEEEcCCCCEEEEEEEcCCCCCCCCEEEEeCCCCCCEEEEEEecceeecccCCceEEEEecc---CCEEEEEEC
Confidence            567788889999999999999754 33456889972  1 11   10         011222222211   224589999


Q ss_pred             ccCCCCCeEEEEEEEcC
Q psy7036          75 DVIETDAGLYKVKAKNK   91 (254)
Q Consensus        75 ~~~~~d~G~Y~C~~~~~   91 (254)
                      +++.+|+|.|.|.+...
T Consensus        79 ~~~~~Dsa~YyCa~~~~   95 (115)
T d1fo0a_          79 ATQIEDSAVYFCAMRGD   95 (115)
T ss_dssp             SCCGGGCEEEEEEEECC
T ss_pred             CCCccccccccceeecC
Confidence            99999999999988643

>d1lk3l1 b.1.1.1 (L:1-106) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.85  E-value=9.9e-09  Score=62.12  Aligned_cols=73  Identities=16%  Similarity=0.315  Sum_probs=48.6

Q ss_pred             CCCceeecCCCeEEEEEEEeeCCCCceEEEeC--C---EEee-------eCCcceEEEeecCCcceEEEEEEeccCCCCC
Q psy7036          14 KPQLRQEDEGNRLIFECQLLCNPKPDIVWFRG--E---TQLS-------EDTRTVMKTTPIGTNKYLVALELDDVIETDA   81 (254)
Q Consensus        14 ~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~--~---~~~~-------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~   81 (254)
                      .|..+.+.+|++|+|+|...+.....+.|||.  +   ..+-       .....++.....+   ....|.|.+++.+|+
T Consensus         6 Qp~s~~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~~~---~~~~L~I~~~~~~Ds   82 (106)
T d1lk3l1           6 QPPALTVSPGEKLTISCKASESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGSG---TDFTLTIDPVEADDT   82 (106)
T ss_dssp             CCSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEET---TEEEEEESSCCGGGC
T ss_pred             eCCeEEECCCCCEEEEEEeCCCCCccEEEEecCCCCCcEEEEEecccccCCcCCceeeecCC---CEEEeEECCcChhhC
Confidence            34578899999999999997555567999973  1   1111       1111122222222   234899999999999


Q ss_pred             eEEEEEEE
Q psy7036          82 GLYKVKAK   89 (254)
Q Consensus        82 G~Y~C~~~   89 (254)
                      |.|.|...
T Consensus        83 a~YyCa~~   90 (106)
T d1lk3l1          83 AIYFCQQS   90 (106)
T ss_dssp             EEEEEEEC
T ss_pred             CCcccccc
Confidence            99999765

>d2gsia1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=98.85  E-value=1.6e-08  Score=61.58  Aligned_cols=79  Identities=16%  Similarity=0.184  Sum_probs=51.3

Q ss_pred             eeEeCCCceeecCCCeEEEEEEEeeC----CCCceEEEeC--CE---E-ee------eCCcceEEEeecCCcceEEEEEE
Q psy7036          10 SFTQKPQLRQEDEGNRLIFECQLLCN----PKPDIVWFRG--ET---Q-LS------EDTRTVMKTTPIGTNKYLVALEL   73 (254)
Q Consensus        10 ~~~~~~~~~~v~~g~~v~l~C~~~~~----~~~~v~W~~~--~~---~-~~------~~~~~~~~~~~~~~~~~~~~l~i   73 (254)
                      ++++.|..+.+.+|++|+|+|.+.+.    ....+.||+.  |+   . +.      .....++.....+   ....|.|
T Consensus         3 ~ltQsP~s~s~~~G~svtL~C~~s~~~~~~~~~~i~WYrQ~pg~~~~~li~~~~~~~~g~~~rfs~~~~~---~~~~L~I   79 (111)
T d2gsia1           3 VLTQSPASLAVSLGQPATISCGASKSVRTSGYSYMDWNQQKPGQPPRRLIYLVSNLESGVPARFSGSGSG---TDFTLNI   79 (111)
T ss_dssp             CEEEECSEEEEETTSCEEEEEEESSCCCCSSSCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEET---TEEEEEE
T ss_pred             ceEeeCCEEEECCCCCEEEEEEECCCCccCCccceEEEEECCCCccEEEEEccCccCCCcCCcEEEecCC---Cchhccc
Confidence            35677888899999999999987532    1234899983  21   1 11      0111122222211   2358999


Q ss_pred             eccCCCCCeEEEEEEEcC
Q psy7036          74 DDVIETDAGLYKVKAKNK   91 (254)
Q Consensus        74 ~~~~~~d~G~Y~C~~~~~   91 (254)
                      .+++.+|++.|.|.+...
T Consensus        80 ~~~~~~DsA~YyCa~~~~   97 (111)
T d2gsia1          80 HPVEEEDAATYYCSHIRE   97 (111)
T ss_dssp             SSCCGGGCEEEEEEECSS
T ss_pred             ccccccCCceEEEEECCC
Confidence            999999999999976543

>d2atpb1 b.1.1.1 (B:1-115) CD8 {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.85  E-value=1.2e-08  Score=62.85  Aligned_cols=76  Identities=16%  Similarity=0.263  Sum_probs=51.3

Q ss_pred             EeCCCceeecCCCeEEEEEEEeeC-CCCceEEEeC-----CEEe----ee-------------CCcceEEEeecCCcceE
Q psy7036          12 TQKPQLRQEDEGNRLIFECQLLCN-PKPDIVWFRG-----ETQL----SE-------------DTRTVMKTTPIGTNKYL   68 (254)
Q Consensus        12 ~~~~~~~~v~~g~~v~l~C~~~~~-~~~~v~W~~~-----~~~~----~~-------------~~~~~~~~~~~~~~~~~   68 (254)
                      ++.|....+.+|++|+|+|.+.+. ....+.||+.     ++.+    ..             ..++.....   .....
T Consensus         2 ~Q~P~~~~v~~G~sv~l~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~r~~~~~~---~~~~~   78 (115)
T d2atpb1           2 IQTPSSLLVQTNHTAKMSCEVKSISKLTSIYWLRERQDPKDKYFEFLASWSSSKGVLYGESVDKKRNIILES---SDSRR   78 (115)
T ss_dssp             EEECSEEEECTTSCEEEEEECCSSCCSSEEEEEEEEECSSCEEEEEEEEEETTTEEEECGGGTTTCCEEEES---TTSSS
T ss_pred             EeeCCcEEEcCCCCEEEEEEEeCCCCCCceEEEEeecCCCCeEEEEeeEEecccCcEecCCcCCCCEEEEEe---CCCCe
Confidence            567888899999999999998753 4456899973     2221    00             011111111   12223


Q ss_pred             EEEEEeccCCCCCeEEEEEEEc
Q psy7036          69 VALELDDVIETDAGLYKVKAKN   90 (254)
Q Consensus        69 ~~l~i~~~~~~d~G~Y~C~~~~   90 (254)
                      ..|.|.+++.+|+|.|.|.+..
T Consensus        79 ~~L~I~~~~~~Dsg~Y~Ca~~~  100 (115)
T d2atpb1          79 PFLSIMNVKPEDSDFYFCATVG  100 (115)
T ss_dssp             CEEEECSCCGGGCEEEEEEEEC
T ss_pred             EEEeecccCCCCCcEEEEeEcC
Confidence            4799999999999999998753

>d2ntsp1 b.1.1.1 (P:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.85  E-value=2.8e-08  Score=60.96  Aligned_cols=78  Identities=13%  Similarity=0.272  Sum_probs=50.6

Q ss_pred             eEeCCCceeecCCCeEEEEEEEeeCCCCceEEEe--CCEEe----e---------eCCcceEEEeecCCcceEEEEEEec
Q psy7036          11 FTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFR--GETQL----S---------EDTRTVMKTTPIGTNKYLVALELDD   75 (254)
Q Consensus        11 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~--~~~~~----~---------~~~~~~~~~~~~~~~~~~~~l~i~~   75 (254)
                      +++.|....+.+|++|+|.|...+ ....+.|||  .++..    .         .....+.....  .......|.|.+
T Consensus         2 VtQ~P~~~~~~~G~svtl~C~~~~-~~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~L~I~~   78 (113)
T d2ntsp1           2 VTQTPRYLIKTRGQQVTLSCSPIS-GHRSVSWYQQTPGQGLQFLFEYFNETQRNKGNFPGRFSGRQ--FSNSRSEMNVST   78 (113)
T ss_dssp             CEEECSEEEEETTCCEEEEEECST-TCCEEEEEEEETTTEEEEEEEEETTEEEEECSCCTTEEEEE--CTTSCEEEEECS
T ss_pred             eEeCCCeEEECCCCCEEEEEEECC-CCCEEEEEEeecccceEeeeeecccccccccccccceeecc--CcCCeeEEEECC
Confidence            356788888999999999998643 345789998  22211    0         01111111111  112234899999


Q ss_pred             cCCCCCeEEEEEEEcC
Q psy7036          76 VIETDAGLYKVKAKNK   91 (254)
Q Consensus        76 ~~~~d~G~Y~C~~~~~   91 (254)
                      ++.+|+|.|.|.+...
T Consensus        79 ~~~~Dsa~YyCA~~~~   94 (113)
T d2ntsp1          79 LELGDSALYLCASSLA   94 (113)
T ss_dssp             CCGGGCEEEEEEEESS
T ss_pred             CCcccceeeeeeeeCC
Confidence            9999999999988743

>d8faba1 b.1.1.1 (A:3-105) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=98.85  E-value=4.1e-09  Score=63.57  Aligned_cols=75  Identities=16%  Similarity=0.198  Sum_probs=48.6

Q ss_pred             EeCCCceeecCCCeEEEEEEEeeCCCCceEEEeC--CE---Eeee-------CCcceEEEeecCCcceEEEEEEeccCCC
Q psy7036          12 TQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRG--ET---QLSE-------DTRTVMKTTPIGTNKYLVALELDDVIET   79 (254)
Q Consensus        12 ~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~--~~---~~~~-------~~~~~~~~~~~~~~~~~~~l~i~~~~~~   79 (254)
                      +++ ..+.+.+|++|+|.|.........+.|||.  |.   .+..       ....+......   .....|.|.+++.+
T Consensus         3 tQp-~sl~~~~G~svtl~C~~~~~~~~~~~WYrQ~pg~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~L~I~~l~~~   78 (103)
T d8faba1           3 TQP-PSVSVSPGQTARITCSANALPNQYAYWYQQKPGRAPVMVIYKDTQRPSGIPQRFSSSTS---GTTVTLTISGVQAE   78 (103)
T ss_dssp             BCC-SEEEECTTSCEEEEEECTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEE---TTEEEEEETTCCGG
T ss_pred             CCC-CeEEECCCCCEEEEEEeCCCCCCCEEEEEccCCCceEEEeeeecccccccCCcEEECCC---CCccCceEcCcchh
Confidence            444 478899999999999886544556899973  21   1110       01111211111   22358999999999


Q ss_pred             CCeEEEEEEEc
Q psy7036          80 DAGLYKVKAKN   90 (254)
Q Consensus        80 d~G~Y~C~~~~   90 (254)
                      |+|.|.|.+..
T Consensus        79 Dsa~YyCA~~~   89 (103)
T d8faba1          79 DEADYYCQAWD   89 (103)
T ss_dssp             GCEEEEEEEEE
T ss_pred             HCceEEeeecC
Confidence            99999998764

>d1f3rb2 b.1.1.1 (B:139-257) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.85  E-value=3.9e-09  Score=65.14  Aligned_cols=77  Identities=18%  Similarity=0.258  Sum_probs=51.4

Q ss_pred             eEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeC--C---EEeee-------CCcceEEEeecCCcceEEEEEEeccCC
Q psy7036          11 FTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRG--E---TQLSE-------DTRTVMKTTPIGTNKYLVALELDDVIE   78 (254)
Q Consensus        11 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~--~---~~~~~-------~~~~~~~~~~~~~~~~~~~l~i~~~~~   78 (254)
                      +++.|..+.+.+|++|+|.|...+.....+.||+.  +   ..+..       ....++.....   .....|.|.+++.
T Consensus         4 ltQ~P~sv~~~~G~svtl~C~~s~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~fs~~~~---~~~~~L~I~~~~~   80 (119)
T d1f3rb2           4 LTQSPSLLSASVGDRVTLSCKGSQNINNYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGS---GTDYTLTISSLQP   80 (119)
T ss_dssp             SCEETSEECCCTTCCEEEEEECSSCCBTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEE---BTEEEEEECSCCG
T ss_pred             EEccCCEEEECCCCCEEEEEEeCCCCcceeEEeeeecccccEEEEEeeccccCceeeeecccCC---CCEEEEEcccCcc
Confidence            45778888899999999999886544556899983  1   22211       11111211111   1234899999999


Q ss_pred             CCCeEEEEEEEc
Q psy7036          79 TDAGLYKVKAKN   90 (254)
Q Consensus        79 ~d~G~Y~C~~~~   90 (254)
                      +|+|.|.|....
T Consensus        81 ~DsavYyCa~~~   92 (119)
T d1f3rb2          81 EDVATYFCYQYN   92 (119)
T ss_dssp             GGCSEEEEEEES
T ss_pred             CCCeEEEeeccC
Confidence            999999998764

>d1dr9a2 b.1.1.3 (A:106-200) CD80, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD80, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.84  E-value=3.2e-08  Score=58.41  Aligned_cols=81  Identities=17%  Similarity=0.194  Sum_probs=52.8

Q ss_pred             CCeeEeCCCceeecCCCeEEEEEEEee-CCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEE
Q psy7036           8 APSFTQKPQLRQEDEGNRLIFECQLLC-NPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKV   86 (254)
Q Consensus         8 ~p~~~~~~~~~~v~~g~~v~l~C~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C   86 (254)
                      +|.+....    ...|+.++|.|.+.| .|.+.|+|+++|..+............++.....+.|.+.   ..+...|+|
T Consensus         5 ~P~V~~~~----~~s~~~~~L~C~~~g~~P~~~V~W~~n~~~~~~~~~~~~~~~~~g~y~v~S~L~v~---~~~~~~~tC   77 (95)
T d1dr9a2           5 TPSISDFE----IPTSNIRRIICSTSGGFPEPHLSWLENGEELNAINTTVSQDPETELYAVSSKLDFN---MTTNHSFMC   77 (95)
T ss_dssp             CCEEEEEE----CSSTTEEEEEEEEEEESSCEEEEEEESSCEECCSEEEEEECTTTCCEEEEEEEEEE---TTSCEEEEE
T ss_pred             CCEEEecc----cCCCCEEEEEEEECcccCCCEEEEecCCcEecccceeeEecCCCccEEEEEEEEcc---CCccceEEE
Confidence            45555332    235788999999987 6888999999998876543322221122333444566664   456789999


Q ss_pred             EEEcCCCce
Q psy7036          87 KAKNKMGEV   95 (254)
Q Consensus        87 ~~~~~~~~~   95 (254)
                      .+.+.....
T Consensus        78 ~V~h~~l~~   86 (95)
T d1dr9a2          78 LIKYGHLRV   86 (95)
T ss_dssp             EEEETTCCE
T ss_pred             EEEecCCCC
Confidence            999876543

>d2fx7l1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 3.2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 3.2 [TaxId: 9606]

Probab=98.84  E-value=7.8e-09  Score=62.87  Aligned_cols=77  Identities=16%  Similarity=0.291  Sum_probs=51.5

Q ss_pred             eEeCCCceeecCCCeEEEEEEEeeC-CCCceEEEeC--CE---Eee-------eCCcceEEEeecCCcceEEEEEEeccC
Q psy7036          11 FTQKPQLRQEDEGNRLIFECQLLCN-PKPDIVWFRG--ET---QLS-------EDTRTVMKTTPIGTNKYLVALELDDVI   77 (254)
Q Consensus        11 ~~~~~~~~~v~~g~~v~l~C~~~~~-~~~~v~W~~~--~~---~~~-------~~~~~~~~~~~~~~~~~~~~l~i~~~~   77 (254)
                      +++.|..+.+.+|++|+|.|..... ....+.||+.  +.   .+-       .....++.....+   ..+.|.|.+++
T Consensus         4 ltQ~P~~~~v~~G~tv~l~C~~~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~s~~~~~---~~~~L~I~~~~   80 (108)
T d2fx7l1           4 LTQSPGTQSLSPGERATLSCRASQSVGNNKLAWYQQRPGQAPRLLIYGASSRPSGVADRFSGSGSG---TDFTLTISRLE   80 (108)
T ss_dssp             EECSSSEEEECTTCCEEEEEEESSCCGGGCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEET---TEEEEEESSCC
T ss_pred             EEeeCCeEEECCCCCEEEEEEeecCCCCccceeEeccccCCCEEEEeeecccccCCccceeeecCC---CEEEEEehHhe
Confidence            5677888899999999999997543 3446889973  21   221       0111122222111   23589999999


Q ss_pred             CCCCeEEEEEEEc
Q psy7036          78 ETDAGLYKVKAKN   90 (254)
Q Consensus        78 ~~d~G~Y~C~~~~   90 (254)
                      .+|+|.|.|.+..
T Consensus        81 ~~Dsa~YyCa~~~   93 (108)
T d2fx7l1          81 PEDFAVYYCQQYG   93 (108)
T ss_dssp             GGGCSEEEEEECS
T ss_pred             ecccEEEeeecCC
Confidence            9999999998753

>d1mjul1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=98.84  E-value=2.1e-08  Score=61.25  Aligned_cols=76  Identities=16%  Similarity=0.229  Sum_probs=50.5

Q ss_pred             eEeCCCceeecCCCeEEEEEEEeeC-----CCCceEEEeC--CE---Ee-------eeCCcceEEEeecCCcceEEEEEE
Q psy7036          11 FTQKPQLRQEDEGNRLIFECQLLCN-----PKPDIVWFRG--ET---QL-------SEDTRTVMKTTPIGTNKYLVALEL   73 (254)
Q Consensus        11 ~~~~~~~~~v~~g~~v~l~C~~~~~-----~~~~v~W~~~--~~---~~-------~~~~~~~~~~~~~~~~~~~~~l~i   73 (254)
                      +++.|..+.+.+|++|+|.|...+.     ....+.||+.  |.   .+       ......++.....   .....|.|
T Consensus         4 lTQ~p~slsv~~G~svtL~C~~s~~~~~~~~~~~i~WYrq~~g~~~~~liy~~~~~~~~~~~r~~~~~s---~~~~~L~I   80 (112)
T d1mjul1           4 MTQAAPSVPVTPGESVSISCRSSKSLLHSNGNTYLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSGSGS---GTAFTLRI   80 (112)
T ss_dssp             EECCCSEEEECTTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEC---SSEEEEEE
T ss_pred             eEecCCEEEECCCCCEEEEEEECCCCccCCCCceeEEEECCCCCcEEEEEEeCCcccCCCCCcEEeecC---CCEEEEEE
Confidence            4577888889999999999998652     2456899973  21   11       1111222222222   23458999


Q ss_pred             eccCCCCCeEEEEEEE
Q psy7036          74 DDVIETDAGLYKVKAK   89 (254)
Q Consensus        74 ~~~~~~d~G~Y~C~~~   89 (254)
                      .+++.+|++.|.|...
T Consensus        81 s~~~~~DsAvYyCa~~   96 (112)
T d1mjul1          81 SRVEAEDVGVYYCLQH   96 (112)
T ss_dssp             SSCCGGGCEEEEEEEC
T ss_pred             CCccccCCceEEEEeC
Confidence            9999999999999654

>d1ncwl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=98.84  E-value=1.8e-08  Score=61.49  Aligned_cols=77  Identities=17%  Similarity=0.193  Sum_probs=50.0

Q ss_pred             eEeCCCceeecCCCeEEEEEEEeeCC-----CCceEEEeC--CE---Eee-------eCCcceEEEeecCCcceEEEEEE
Q psy7036          11 FTQKPQLRQEDEGNRLIFECQLLCNP-----KPDIVWFRG--ET---QLS-------EDTRTVMKTTPIGTNKYLVALEL   73 (254)
Q Consensus        11 ~~~~~~~~~v~~g~~v~l~C~~~~~~-----~~~v~W~~~--~~---~~~-------~~~~~~~~~~~~~~~~~~~~l~i   73 (254)
                      +++.|..+.+.+|++|+|.|...+..     ..-+.||+.  |+   .+.       .....++.....   .....|.|
T Consensus         4 lTQsP~sls~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~pg~~~~~l~~~~~~~~~g~~~~fs~~~~---~~~~~L~I   80 (112)
T d1ncwl1           4 MTQSPKTISVTIGQPASISCKSSQRLLNSNGKTFLNWLLQRPGQSPKRLIYLGTKLDSGVPDRFTGSGS---GTDFTLKI   80 (112)
T ss_dssp             EEEECSEEEEETTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEE---TTEEEEEE
T ss_pred             EeCcCCEEEECCCCCEEEEEEECcccccCCCCcccEEEEcCCCCceEEEEeccCcCCCCcCceEEeeCC---CCEEEEEE
Confidence            56778888999999999999975322     245889973  21   111       111112222111   12348999


Q ss_pred             eccCCCCCeEEEEEEEc
Q psy7036          74 DDVIETDAGLYKVKAKN   90 (254)
Q Consensus        74 ~~~~~~d~G~Y~C~~~~   90 (254)
                      .+++.+|+|.|.|...+
T Consensus        81 ~~~~~eDsAvYYC~~~~   97 (112)
T d1ncwl1          81 SRVEAEDLGVYYCWQGT   97 (112)
T ss_dssp             SSCCGGGCEEEEEEECS
T ss_pred             CccccCcCEeEEEEcCC
Confidence            99999999999996543

>d2esvd1 b.1.1.1 (D:4-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.83  E-value=7.6e-09  Score=63.15  Aligned_cols=74  Identities=15%  Similarity=0.224  Sum_probs=49.2

Q ss_pred             CCceeecCCCeEEEEEEEeeC-CCCceEEEeC--CE---Ee-e------eCCcceEEEeecCCcceEEEEEEeccCCCCC
Q psy7036          15 PQLRQEDEGNRLIFECQLLCN-PKPDIVWFRG--ET---QL-S------EDTRTVMKTTPIGTNKYLVALELDDVIETDA   81 (254)
Q Consensus        15 ~~~~~v~~g~~v~l~C~~~~~-~~~~v~W~~~--~~---~~-~------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~   81 (254)
                      |.++.+.+|++|+|.|..... ....+.||+.  |+   .+ .      ...+.+.....   ......|.|.+++.+|+
T Consensus         5 P~svsv~~G~~vtl~C~~s~~~~~~~l~WYrq~~g~~~~~i~~~~~~~~~~~~~~~~~~~---~~~~~~L~I~~~~~~Ds   81 (110)
T d2esvd1           5 PPSMDCAEGRAANLPCNHSTISGNEYVYWYRQIHSQGPQYIIHGLKNNETNEMASLIITE---DRKSSTLILPHATLRDT   81 (110)
T ss_dssp             CSEEEEETTSCEEEEEECTTCCTTEEEEEEEECTTSCCEEEEEESSSCEECSSCEEEECT---TCSEEEEEESSCCGGGC
T ss_pred             CCEEEECCCCCEEEEEEEcCCCCCCeEEEEEECCCCccEEeeeeeceecccccceeeecc---cCCeeeehhcccccCCc
Confidence            456889999999999997543 3445889972  21   11 1      11222222222   23456899999999999


Q ss_pred             eEEEEEEEcC
Q psy7036          82 GLYKVKAKNK   91 (254)
Q Consensus        82 G~Y~C~~~~~   91 (254)
                      |.|.|.+...
T Consensus        82 a~YyCa~~~~   91 (110)
T d2esvd1          82 AVYYCIVVRS   91 (110)
T ss_dssp             EEEEEEEEES
T ss_pred             eEEEEEEeCC
Confidence            9999987643

>d1l6za1 b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.83  E-value=5.2e-09  Score=63.50  Aligned_cols=78  Identities=17%  Similarity=0.226  Sum_probs=51.6

Q ss_pred             ecCCCeEEEEEEEeeCCCCeEEEEECCEecc-----------------cCCcceEEEcCCCCceeeEEEEccCCCCCcee
Q psy7036         124 EDDGKRLLFECRIQADPAPTVIWSHSGVQVK-----------------EDKRHKFSIDKDGHSYFASLEIIDVTIEDAGK  186 (254)
Q Consensus       124 ~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~  186 (254)
                      +.+|+++.|.|.........+.|+|......                 .....+.....++     +|.|.+++.+|+|.
T Consensus        11 v~~G~~V~L~c~~~p~~~~~~~W~k~~~~~~~~~i~~y~~~~~~~~~~~~y~gR~~l~~ng-----SL~I~~v~~~D~G~   85 (107)
T d1l6za1          11 VAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNG-----SLLFQMITMKDMGV   85 (107)
T ss_dssp             CCTTCCEEEEEESCCTTCSEEEEEESSCCSGGGEEEEECSTTCCEECCSSCCSSEEECTTS-----CEEECSCCGGGCEE
T ss_pred             ccCCCCEEEEecCCCCCceEEEEEeCcccCCceeeEEEEcCCCccccCCcceeEEEEcccc-----cEEEcCCCchhCEE
Confidence            4589999999974333356799998543211                 0011233333443     79999999999999


Q ss_pred             EEEEEEcCCC-cceEEEEEEE
Q psy7036         187 YKVTAKNELG-ESNATISLNF  206 (254)
Q Consensus       187 y~C~~~~~~~-~~~~~~~~~v  206 (254)
                      |+|.+.+..+ ....++.|.|
T Consensus        86 Y~c~v~~~~~~~~~~~v~L~V  106 (107)
T d1l6za1          86 YTLDMTDENYRRTQATVRFHV  106 (107)
T ss_dssp             EEEEEEETTEEECCCCEEECC
T ss_pred             EEEEEEECCCCEEEEEEEEEE
Confidence            9999987654 3445555543

>d1h5ba_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.82  E-value=2.4e-08  Score=61.21  Aligned_cols=82  Identities=20%  Similarity=0.293  Sum_probs=53.2

Q ss_pred             eeEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeC--C-EE--e-eeCCc----ceEEEeecCCcceEEEEEEeccCCC
Q psy7036          10 SFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRG--E-TQ--L-SEDTR----TVMKTTPIGTNKYLVALELDDVIET   79 (254)
Q Consensus        10 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~--~-~~--~-~~~~~----~~~~~~~~~~~~~~~~l~i~~~~~~   79 (254)
                      .+.+.|..+.+.+|++|+|.|.... ....+.||+.  + .+  + .....    ..............+.|.|.+++.+
T Consensus         3 ~V~Q~P~~~~v~~G~~vtl~C~~~~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~   81 (113)
T d1h5ba_           3 QVEQSPSALSLHEGTDSALRCNFTT-TMRSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSERARYSTLHIRDAQLE   81 (113)
T ss_dssp             SEEEECSEEEEETTCCEEEEEEESS-CCSEEEEEEECTTSCEEEEEEESSSEEEETTEEEECCSSSSSEEEEEECSCCGG
T ss_pred             CeEECCCEEEEcCCCCEEEEEEEec-CCccceEEEeecccceEEEEEeeeeeccccccceEEeecCCceeEEEECCCCHh
Confidence            3567788889999999999999863 3456899982  2 11  1 10000    0011111122234458999999999


Q ss_pred             CCeEEEEEEEcCC
Q psy7036          80 DAGLYKVKAKNKM   92 (254)
Q Consensus        80 d~G~Y~C~~~~~~   92 (254)
                      |+|.|.|.+....
T Consensus        82 Dsa~YyCa~~~~~   94 (113)
T d1h5ba_          82 DSGTYFCAAEASS   94 (113)
T ss_dssp             GCEEEEEEEECSS
T ss_pred             HCEEEEEEecCCC
Confidence            9999999987544

>d2aq2a1 b.1.1.1 (A:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.81  E-value=1.9e-08  Score=61.34  Aligned_cols=77  Identities=16%  Similarity=0.336  Sum_probs=51.7

Q ss_pred             CeeEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeC--CE-E--e-ee-----------CCcceEEEeecCCcceEEEE
Q psy7036           9 PSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRG--ET-Q--L-SE-----------DTRTVMKTTPIGTNKYLVAL   71 (254)
Q Consensus         9 p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~--~~-~--~-~~-----------~~~~~~~~~~~~~~~~~~~l   71 (254)
                      +.+++.|....+.+|++|+|+|...+ ....+.|||.  |+ +  + ..           ..++.. ...   ......|
T Consensus         2 ~~V~Q~P~~~~~~~G~~vtl~C~~s~-~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~L   76 (110)
T d2aq2a1           2 AAVTQSPRNKVAVTGEKVTLSCQQTN-NHNNMYWYRQDTGHGLRLIHYSYGVGNTEKGDIPDGYEA-SRP---SQEQFSL   76 (110)
T ss_dssp             CSEEEECSEEEECTTCCEEEEEEESS-CCSEEEEEEECTTSCEEEEEEESSTTCCEECSCCTTCEE-EEE---ETTEEEE
T ss_pred             CCEEEeCCeEEEcCCCCEEEEEEECC-CcCcEEEEEEcccCCceEEEEEeecCCcccCCCCCCEEE-Eec---cCCEEEE
Confidence            35678888999999999999998753 3457999982  21 1  1 00           011111 111   1123589


Q ss_pred             EEeccCCCCCeEEEEEEEc
Q psy7036          72 ELDDVIETDAGLYKVKAKN   90 (254)
Q Consensus        72 ~i~~~~~~d~G~Y~C~~~~   90 (254)
                      .|.+++.+|+|.|.|.+..
T Consensus        77 ~I~~~~~~Dsa~YyCa~~~   95 (110)
T d2aq2a1          77 ILESATPSQTSVYFCASGG   95 (110)
T ss_dssp             EESSCCGGGCEEEEEEEEE
T ss_pred             EECCCCHhhCEEEEEeeCC
Confidence            9999999999999998764

>d1n4xl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=98.80  E-value=3.3e-08  Score=60.39  Aligned_cols=78  Identities=15%  Similarity=0.192  Sum_probs=51.4

Q ss_pred             eeEeCCCceeecCCCeEEEEEEEeeCC-----CCceEEEeC--CE---Ee-------eeCCcceEEEeecCCcceEEEEE
Q psy7036          10 SFTQKPQLRQEDEGNRLIFECQLLCNP-----KPDIVWFRG--ET---QL-------SEDTRTVMKTTPIGTNKYLVALE   72 (254)
Q Consensus        10 ~~~~~~~~~~v~~g~~v~l~C~~~~~~-----~~~v~W~~~--~~---~~-------~~~~~~~~~~~~~~~~~~~~~l~   72 (254)
                      .+++.|....+.+|++|+|.|...+..     ...+.||+.  |+   .+       ......++.....   .....|.
T Consensus         4 ~ltQ~P~s~~~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~fs~~~~---~~~~~L~   80 (113)
T d1n4xl_           4 LMTQTPLYLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGS---GTDFTLK   80 (113)
T ss_dssp             CEEEECSEEEECTTCCEEEEEEESSCCCCTTSCCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEC---SSEEEEE
T ss_pred             eEeCcCCEEEECCCCCEEEEEEeccccccCCCceEeEEEecCCCCccEEEEEecCCCccccCCCeeeecc---CCcccCc
Confidence            356778889999999999999985422     246899973  21   11       0111112222211   2335899


Q ss_pred             EeccCCCCCeEEEEEEEc
Q psy7036          73 LDDVIETDAGLYKVKAKN   90 (254)
Q Consensus        73 i~~~~~~d~G~Y~C~~~~   90 (254)
                      |.+++.+|+|.|.|...+
T Consensus        81 I~~~~~~DsavYyCa~~~   98 (113)
T d1n4xl_          81 ISRVEAEDLGIYYCFQGS   98 (113)
T ss_dssp             ESSCCGGGCEEEEEEECS
T ss_pred             cCCCCcccCEEEEEEECC
Confidence            999999999999997553

>d1vcaa1 b.1.1.3 (A:91-199) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.80  E-value=3.4e-08  Score=60.16  Aligned_cols=82  Identities=13%  Similarity=0.202  Sum_probs=51.3

Q ss_pred             CCeeEeCCCceeecCCCeEEEEEEEee-CCCC--ceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEE
Q psy7036           8 APSFTQKPQLRQEDEGNRLIFECQLLC-NPKP--DIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLY   84 (254)
Q Consensus         8 ~p~~~~~~~~~~v~~g~~v~l~C~~~~-~~~~--~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y   84 (254)
                      .|.|....   .+.+|+.++|+|.+.+ .|.+  .++|++++..+........ ....+.....+.|.+.....++...|
T Consensus         4 ~P~I~~~~---~l~~G~~~~l~C~v~~~~P~~~~~i~W~~g~~~~~~~~~~~~-~~~~~~~~~~s~l~~~~~~~D~g~~l   79 (109)
T d1vcaa1           4 DPEIHLSG---PLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLED-ADRKSLETKSLEVTFTPVIEDIGKVL   79 (109)
T ss_dssp             CCEEEESS---CEETTSCEEEEEEEEEEBSGGGEEEEEEETTEEEEEEECCSC-CSSCCCEEEEEEEEECCCGGGTTCEE
T ss_pred             CCEEecCC---CccCCCeEEEEeEeCCcCCCCceEEEEeccCceeeccccccc-cccCCcceeeEEEEccCChHHCCcEE
Confidence            46665433   3679999999999976 6644  6899999988754321110 11112222334566654444455589


Q ss_pred             EEEEEcCCC
Q psy7036          85 KVKAKNKMG   93 (254)
Q Consensus        85 ~C~~~~~~~   93 (254)
                      +|+|.+..+
T Consensus        80 tC~a~~~~~   88 (109)
T d1vcaa1          80 VCRAKLHID   88 (109)
T ss_dssp             EEEEEECSC
T ss_pred             EEEEEcCcC
Confidence            999997764

>d1ucta2 b.1.1.4 (A:101-196) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.79  E-value=1e-08  Score=60.63  Aligned_cols=76  Identities=12%  Similarity=0.085  Sum_probs=54.4

Q ss_pred             CCCeeEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEE
Q psy7036           7 FAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKV   86 (254)
Q Consensus         7 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C   86 (254)
                      ..|.+...|.. .|..|++|+|.|.........+.|+|+|......    ....     ...+.+.|.+++..|+|.|+|
T Consensus         4 PkP~Lsa~P~~-~V~~G~~VTL~C~~~~~~~~~f~L~k~g~~~~~~----~~~~-----~~~a~F~l~~v~~~~~G~Y~C   73 (96)
T d1ucta2           4 GKPFLSADRGL-VLMPGENISLTCSSAHIPFDRFSLAKEGELSLPQ----HQSG-----EHPANFSLGPVDLNVSGIYRC   73 (96)
T ss_dssp             CCCEEEESSCS-EECTTCCCEEEEECSSSCCSEEEEEETTCSSCCS----EEEC-----SSSEEEECCSCCGGGCEEEEE
T ss_pred             CCCEEEEeCCC-ccCCCCeEEEEEeCCCCCceEEEEEECCcccceE----EcCC-----CcccEEEEeccccccCcEEEE
Confidence            47888888866 6899999999998642344578999998632211    1111     112379999999999999999


Q ss_pred             EEEcCC
Q psy7036          87 KAKNKM   92 (254)
Q Consensus        87 ~~~~~~   92 (254)
                      ......
T Consensus        74 ~y~~~~   79 (96)
T d1ucta2          74 YGWYNR   79 (96)
T ss_dssp             EEECTT
T ss_pred             EEEcCC
Confidence            876443

>d1q9ra1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]

Probab=98.79  E-value=1.8e-08  Score=61.67  Aligned_cols=78  Identities=15%  Similarity=0.258  Sum_probs=50.6

Q ss_pred             eeEeCCCceeecCCCeEEEEEEEeeC------CCCceEEEeC--CE---Eee-------eCCcceEEEeecCCcceEEEE
Q psy7036          10 SFTQKPQLRQEDEGNRLIFECQLLCN------PKPDIVWFRG--ET---QLS-------EDTRTVMKTTPIGTNKYLVAL   71 (254)
Q Consensus        10 ~~~~~~~~~~v~~g~~v~l~C~~~~~------~~~~v~W~~~--~~---~~~-------~~~~~~~~~~~~~~~~~~~~l   71 (254)
                      ++++.|..+.+.+|++|+|.|...+.      ....+.|||.  |+   .+.       .....+......   .....|
T Consensus         3 ~~tQ~P~~v~~~~G~svtL~C~~s~~~~~~~~~~~~~~WYrq~~g~~p~ll~~~~~~~~~~~~~~~s~~~s---~~~~~L   79 (113)
T d1q9ra1           3 VMSQSPSSLAVSAGEKVTMSCKSSQSLLNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGS---GTDFTL   79 (113)
T ss_dssp             CEEEECSEEEEETTSCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEE---TTEEEE
T ss_pred             CEEccCCEEEECCCCCEEEEEEECCCcccCCCCCcceEEEecCCCCCCEEEEecccccCCCCCccEEEeCC---CCeEeE
Confidence            35677888999999999999987532      1234899983  21   111       011111211111   223479


Q ss_pred             EEeccCCCCCeEEEEEEEc
Q psy7036          72 ELDDVIETDAGLYKVKAKN   90 (254)
Q Consensus        72 ~i~~~~~~d~G~Y~C~~~~   90 (254)
                      .|.+++++|+|.|.|....
T Consensus        80 ~I~~l~~~Dsa~YyCA~~~   98 (113)
T d1q9ra1          80 TITSVQAEDLAVYYCKQSY   98 (113)
T ss_dssp             EESSCCGGGCEEEEEEECS
T ss_pred             EecccccCCCeEEEecccC
Confidence            9999999999999998653

>d1k5nb_ b.1.1.2 (B:) beta2-microglobulin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.79  E-value=2.7e-08  Score=59.21  Aligned_cols=84  Identities=10%  Similarity=0.140  Sum_probs=54.8

Q ss_pred             CCCCeeEeCCCceeecCCCeEEEEEEEeeC-C-CCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeE
Q psy7036           6 DFAPSFTQKPQLRQEDEGNRLIFECQLLCN-P-KPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGL   83 (254)
Q Consensus         6 ~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~-~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~   83 (254)
                      ..+|.+.+.+.. .+..|+.++|.|.+.|. | ...++|.+||..+............++.....+.|.+   ..++.+.
T Consensus         3 ~~~P~V~v~~~~-~~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~v~~~~~~~~~~~~dgty~~~s~l~v---~~~~~~~   78 (100)
T d1k5nb_           3 QRTPKIQVYSRH-PAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYLLYYTEF---TPTEKDE   78 (100)
T ss_dssp             CBCCEEEEEESS-CCCTTSCEEEEEEEEEEBSSCCEEEEEETTEECTTCEECCCEECTTSCEEEEEEEEE---CCCSSCC
T ss_pred             cCCCeeEEEcCC-cccCCCCEEEEEEECccCCCCcEEEEEECCEecCCccccceecCCCCcEEEEEEeEE---CCCCCCE
Confidence            456777664332 34678999999999984 4 4579999999988544333333333333333444544   4566779


Q ss_pred             EEEEEEcCCC
Q psy7036          84 YKVKAKNKMG   93 (254)
Q Consensus        84 Y~C~~~~~~~   93 (254)
                      |+|++.+...
T Consensus        79 ytC~V~H~sl   88 (100)
T d1k5nb_          79 YACRVNHVTL   88 (100)
T ss_dssp             EEEEEECTTC
T ss_pred             EEEEEEeCCC
Confidence            9999997653

>d1oaql_ b.1.1.1 (L:) Immunoglobulin light chain lambda variable domain, VL-lambda {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.78  E-value=2.9e-08  Score=60.18  Aligned_cols=78  Identities=14%  Similarity=0.195  Sum_probs=50.1

Q ss_pred             CeeEeCCCceeecCCCeEEEEEEEeeCC---CCceEEEe---CCEEe---------eeCCcceEEEeecCCcceEEEEEE
Q psy7036           9 PSFTQKPQLRQEDEGNRLIFECQLLCNP---KPDIVWFR---GETQL---------SEDTRTVMKTTPIGTNKYLVALEL   73 (254)
Q Consensus         9 p~~~~~~~~~~v~~g~~v~l~C~~~~~~---~~~v~W~~---~~~~~---------~~~~~~~~~~~~~~~~~~~~~l~i   73 (254)
                      +.+++.| .+.+.+|++|+|.|...+..   ...+.||+   +..+.         ......++.....+   ..+.|.|
T Consensus         2 ~~~tQ~~-slsvs~G~tvtl~C~~s~~~~~~~~~v~WyrQ~pg~~p~~l~y~~~~~~~~~~~rf~~s~~~---~~~~L~I   77 (110)
T d1oaql_           2 AVVTQES-ALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIG---NKAALTI   77 (110)
T ss_dssp             CCEEECS-EEEECTTCEEEEEEEETTBCCCGGGCCEEEEEETTTEEEEEEETTTEECTTSCTTEEEEEET---TEEEEEE
T ss_pred             CCEeeCC-CEEeCCCCCEEEEEEEcCCCCcceeeeEEEEeecccceeeeeeeeceeccccceeeeecccc---cceeeec
Confidence            3456655 67899999999999996432   22389997   22221         01111122222222   2358999


Q ss_pred             eccCCCCCeEEEEEEEc
Q psy7036          74 DDVIETDAGLYKVKAKN   90 (254)
Q Consensus        74 ~~~~~~d~G~Y~C~~~~   90 (254)
                      .+++.+|+|.|.|....
T Consensus        78 ~~~~~~Dsa~YyCa~~~   94 (110)
T d1oaql_          78 TGAQTEDEAIYFCALWY   94 (110)
T ss_dssp             ESCCGGGCEEEEEEEEE
T ss_pred             CCCCccccEeEEEEccc
Confidence            99999999999998764

>d1lk2b_ b.1.1.2 (B:) beta2-microglobulin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.78  E-value=7.1e-08  Score=57.41  Aligned_cols=83  Identities=14%  Similarity=0.207  Sum_probs=53.7

Q ss_pred             CCCCeeEeCCCceeecCCCeEEEEEEEeeC-C-CCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeE
Q psy7036           6 DFAPSFTQKPQLRQEDEGNRLIFECQLLCN-P-KPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGL   83 (254)
Q Consensus         6 ~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~-~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~   83 (254)
                      ..+|.+.+.+.. .+..|+.++|.|.+.|. | ...|+|++||..+............++.....+.|.+   ...+.+.
T Consensus         2 ~~~P~V~v~~~~-~~~~~~~~tL~C~v~gf~P~~i~V~W~~~g~~~~~~~~~~~~~~~dgtf~~~s~l~v---~~~~~~~   77 (99)
T d1lk2b_           2 QKTPQIQVYSRH-PPENGKPNILNCYVTQFHPPHIEIQMLKNGKKIPKVEMSDMSFSKDWSFYILAHTEF---TPTETDT   77 (99)
T ss_dssp             CBCCEEEEEESS-CCCTTSCEEEEEEEEEEBSSCCEEEEEETTEECTTCEEEEEEECTTCCEEEEEEEEE---CCCSSCC
T ss_pred             CCCCEEEEEcCC-CccCCCcEEEEEEEEEEECCCcEEEEeeCCeecCCcEECceeECCCCCEEEEEEeEe---cCcCCCE
Confidence            346777664432 24578889999999884 4 4579999999987654333333333333333444444   4566678


Q ss_pred             EEEEEEcCC
Q psy7036          84 YKVKAKNKM   92 (254)
Q Consensus        84 Y~C~~~~~~   92 (254)
                      |+|.+.+..
T Consensus        78 ytC~V~H~s   86 (99)
T d1lk2b_          78 YACRVKHDS   86 (99)
T ss_dssp             EEEEEECTT
T ss_pred             EEEEEEeCC
Confidence            999998765

>d2bnub1 b.1.1.1 (B:2-113) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.77  E-value=7e-08  Score=58.98  Aligned_cols=77  Identities=13%  Similarity=0.252  Sum_probs=49.9

Q ss_pred             eEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeC--C-EE--e---ee-------CCcceEEEeecCCcceEEEEEEec
Q psy7036          11 FTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRG--E-TQ--L---SE-------DTRTVMKTTPIGTNKYLVALELDD   75 (254)
Q Consensus        11 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~--~-~~--~---~~-------~~~~~~~~~~~~~~~~~~~l~i~~   75 (254)
                      +++.|....+.+|++++|.|... .....+.||+.  | .+  +   ..       ..........  .......|.|.+
T Consensus         2 VtQ~P~~~~~~~G~svtl~C~~s-~~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~L~I~~   78 (112)
T d2bnub1           2 VTQTPKFQVLKTGQSMTLQCAQD-MNHEYMSWYRQDPGMGLRLIHYSVGAGITDQGEVPNGYNVSR--STTEDFPLRLLS   78 (112)
T ss_dssp             EEEECSEEEEETTCCEEEEEEES-SCCSEEEEEEEETTTEEEEEEEEEETTEEEECSSCTTCEECC--SSSSBCCEEESS
T ss_pred             eEECCCeEEECCCCCEEEEEEEE-CCccceEecccccccCccceeeEeccCceecCccccceeEec--CCCCEEEEEECC
Confidence            46678888899999999999875 34567999972  2 11  1   00       0001111111  112233799999


Q ss_pred             cCCCCCeEEEEEEEc
Q psy7036          76 VIETDAGLYKVKAKN   90 (254)
Q Consensus        76 ~~~~d~G~Y~C~~~~   90 (254)
                      +.++|+|.|.|.+..
T Consensus        79 ~~~~DsavYyCA~~~   93 (112)
T d2bnub1          79 AAPSQTSVYFCASSY   93 (112)
T ss_dssp             CCGGGCEEEEEEEEC
T ss_pred             CCHHHCEEEEEeecC
Confidence            999999999998763

>d1nfdb1 b.1.1.1 (B:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.76  E-value=2.3e-08  Score=61.23  Aligned_cols=78  Identities=15%  Similarity=0.386  Sum_probs=51.6

Q ss_pred             CeeEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeCC--E---Ee-e-e----------CCcceEEEeecCCcceEEEE
Q psy7036           9 PSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGE--T---QL-S-E----------DTRTVMKTTPIGTNKYLVAL   71 (254)
Q Consensus         9 p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~--~---~~-~-~----------~~~~~~~~~~~~~~~~~~~l   71 (254)
                      +.+++.|....+.+|++|+|.|.... ....+.|||..  +   .+ . .          ..++...    ........|
T Consensus         2 ~~VtQ~P~~~~~~~G~~v~l~C~~~~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~L   76 (113)
T d1nfdb1           2 SGVVQSPRHIIKEKGGRSVLTCIPIS-GHSNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQ----QFDDYHSEM   76 (113)
T ss_dssp             CSCEEECSEEEEETTCCCEEEEECCT-TCCEEEEEEBCSSCCCEEEEEEETTTEEEESSCCTTCCCE----ECTTSCEEE
T ss_pred             CCEEEcCCEEEEeCCCCEEEEEEeCC-CCCEEEEEEECCcCCCcceeeeeecccccCCCcccceeeE----cCCCCeEEE
Confidence            34677888889999999999998642 34569999732  1   11 0 0          0111111    111223489


Q ss_pred             EEeccCCCCCeEEEEEEEcC
Q psy7036          72 ELDDVIETDAGLYKVKAKNK   91 (254)
Q Consensus        72 ~i~~~~~~d~G~Y~C~~~~~   91 (254)
                      .|.+++.+|+|.|.|.+...
T Consensus        77 ~I~~~~~~Dsa~YyCa~~~~   96 (113)
T d1nfdb1          77 NMSALELEDSAMYFCASSLR   96 (113)
T ss_dssp             ECCSCCGGGCEEECEEEESS
T ss_pred             EecccCcCCceeEEEEeecC
Confidence            99999999999999987643

>d2g5ra1 b.1.1.1 (A:24-144) N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.76  E-value=8e-09  Score=64.41  Aligned_cols=79  Identities=20%  Similarity=0.275  Sum_probs=50.0

Q ss_pred             eCCCceeecCCCeEEEEEEEeeC-------CCCceEEEeCCEEee---------------eCCcceEEEeecCCcceEEE
Q psy7036          13 QKPQLRQEDEGNRLIFECQLLCN-------PKPDIVWFRGETQLS---------------EDTRTVMKTTPIGTNKYLVA   70 (254)
Q Consensus        13 ~~~~~~~v~~g~~v~l~C~~~~~-------~~~~v~W~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~   70 (254)
                      +.|.++++.+|++|+|.|.....       ....+.|++....-.               .....+..... ......++
T Consensus         6 ~~~~svtv~~G~~V~ipC~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~-~~~~~~~s   84 (121)
T d2g5ra1           6 TMQSSVTVQEGMCVHVRCSFSYPVDSQTDSDPVHGYWFRAGNDISWKAPVATNNPAWAVQEETRDRFHLLG-DPQTKNCT   84 (121)
T ss_dssp             ECCSEEEECTTCCEEECCEEECC--CTTTTSCCEEEEEECC-----CCCSEESCTTSCCCTTTTTTEEECS-CGGGTBCC
T ss_pred             EeCCEEEEccCCcEEEEEEEeCCCCCCcccccEEEEeeEecCCCceEEEEeeCCCCceeccccceEEEEee-eCcCCEEE
Confidence            45678899999999999998421       123578988643210               01111222221 12233458


Q ss_pred             EEEeccCCCCCeEEEEEEEcCC
Q psy7036          71 LELDDVIETDAGLYKVKAKNKM   92 (254)
Q Consensus        71 l~i~~~~~~d~G~Y~C~~~~~~   92 (254)
                      |+|.+++.+|+|.|.|.+....
T Consensus        85 L~I~~v~~~DsG~Y~C~v~~~~  106 (121)
T d2g5ra1          85 LSIRDARMSDAGRYFFRMEKGN  106 (121)
T ss_dssp             EEECSCCGGGCEEEEEEEEETT
T ss_pred             EEECCCChHHCEEEEEEEEeCC
Confidence            9999999999999999997543

>d1ogae1 b.1.1.1 (E:5-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.76  E-value=6.3e-08  Score=59.40  Aligned_cols=78  Identities=15%  Similarity=0.287  Sum_probs=50.6

Q ss_pred             eEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeC--CE---Eee---e-------CCcceEEEeecCCcceEEEEEEec
Q psy7036          11 FTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRG--ET---QLS---E-------DTRTVMKTTPIGTNKYLVALELDD   75 (254)
Q Consensus        11 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~--~~---~~~---~-------~~~~~~~~~~~~~~~~~~~l~i~~   75 (254)
                      +++.|..+.+.+|++|+|.|... .....+.||+.  ++   .+.   .       ...........  ......|.|.+
T Consensus         2 VtQsP~~~~~~~G~svtl~C~~s-~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~L~I~~   78 (114)
T d1ogae1           2 ITQSPKYLFRKEGQNVTLSCEQN-LNHDAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVSRE--KKESFPLTVTS   78 (114)
T ss_dssp             EECSCSEEEEETTCCEEECCEEC-SCCSEEEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEECCS--STTBCCEEECS
T ss_pred             cEEcCCeEEEcCCCCEEEEEEEe-cCCCcEEEEeeccccCCcceeeeeeeeccccccCCCceEEEcc--cCCeEEEEECc
Confidence            35678888999999999999975 44567999973  21   110   0       00011111111  12233799999


Q ss_pred             cCCCCCeEEEEEEEcC
Q psy7036          76 VIETDAGLYKVKAKNK   91 (254)
Q Consensus        76 ~~~~d~G~Y~C~~~~~   91 (254)
                      +..+|+|.|.|.....
T Consensus        79 ~~~~DSa~YyCa~~~~   94 (114)
T d1ogae1          79 AQKNPTAFYLCASSSR   94 (114)
T ss_dssp             CCSCCCEEEEEEEESS
T ss_pred             CCcCCceeEEEeeccC
Confidence            9999999999987644

>d1rzfl1 b.1.1.1 (L:2-108) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=98.76  E-value=3.5e-08  Score=60.22  Aligned_cols=77  Identities=14%  Similarity=0.268  Sum_probs=49.8

Q ss_pred             eEeCCCceeecCCCeEEEEEEEeeCC--CCceEEEeC--C---EEee-------eCCcceEEEeecCCcceEEEEEEecc
Q psy7036          11 FTQKPQLRQEDEGNRLIFECQLLCNP--KPDIVWFRG--E---TQLS-------EDTRTVMKTTPIGTNKYLVALELDDV   76 (254)
Q Consensus        11 ~~~~~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~--~---~~~~-------~~~~~~~~~~~~~~~~~~~~l~i~~~   76 (254)
                      +++ |.++.+.+|++++|+|...+..  ...+.||+.  +   ..+.       .....++.....+   ..+.|.|.++
T Consensus         4 ltQ-p~s~~v~~G~svtl~C~~s~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~---~~~~L~I~~~   79 (111)
T d1rzfl1           4 LTQ-PPSVSAAPGQKVTISCSGSSSNIGNNDVSWYQQFPGTVPKLVIYENNERPSGIPDRFSGSKSG---TSATLGITGL   79 (111)
T ss_dssp             BBC-CSEEEECTTSCEEEEEECCCCCCCTSCEEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEET---TEEEEEESSC
T ss_pred             eee-CcceEeCCCCCEEEEEEECCcCCcCCcccceeeecccceEEEeeecCCCccccccceeeeCCC---CEeeeEEeee
Confidence            344 4478899999999999986432  345999973  1   1121       1111122222222   2358999999


Q ss_pred             CCCCCeEEEEEEEcC
Q psy7036          77 IETDAGLYKVKAKNK   91 (254)
Q Consensus        77 ~~~d~G~Y~C~~~~~   91 (254)
                      +.+|+|.|.|.+...
T Consensus        80 ~~~Dsa~YyCA~~~~   94 (111)
T d1rzfl1          80 QTGDEADYYCGTWDS   94 (111)
T ss_dssp             CGGGCSEEEEEEEET
T ss_pred             ccccCcceEEeecCC
Confidence            999999999987644

>d1nkra2 b.1.1.4 (A:102-200) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=98.75  E-value=2.7e-08  Score=59.19  Aligned_cols=77  Identities=12%  Similarity=0.049  Sum_probs=52.5

Q ss_pred             CCCeeEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEE
Q psy7036           7 FAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKV   86 (254)
Q Consensus         7 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C   86 (254)
                      .+|.+...|.. .|..|++|+|.|... .....+.|+|+|...........  .    ......+.|..+...|+|.|+|
T Consensus         5 pkPsLsa~P~~-~V~~G~~VTL~C~~~-~~~~~f~L~k~g~~~~~~~~~~~--~----~~~~~~f~~~~~~~~~~G~Y~C   76 (99)
T d1nkra2           5 EKPSLSAQPGP-TVLAGENVTLSCSSR-SSYDMYHLSREGEAHERRLPAGP--K----VNGTFQADFPLGPATHGGTYRC   76 (99)
T ss_dssp             CCCEEEEESCS-EECTTCEEEEEEEES-SCCSEEEEEETTCSSCEEEECEE--E----ETTEEEEEEEEEECCSCEEEEE
T ss_pred             CCCEEEEeCCC-cccCCCeEEEEECCC-CCccEEEEEECCCccccEEEccc--c----CCccEEEEEeccccccCEEEEE
Confidence            47888888865 678999999999875 45668999998853221111000  0    0111256778888899999999


Q ss_pred             EEEcC
Q psy7036          87 KAKNK   91 (254)
Q Consensus        87 ~~~~~   91 (254)
                      .....
T Consensus        77 ~y~~~   81 (99)
T d1nkra2          77 FGSFH   81 (99)
T ss_dssp             EEEET
T ss_pred             EeecC
Confidence            87644

>d1j8he1 b.1.1.1 (E:2-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.75  E-value=9.7e-08  Score=58.44  Aligned_cols=78  Identities=15%  Similarity=0.296  Sum_probs=50.5

Q ss_pred             eeEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeC--CE-E--e-ee-C--------CcceEEEeecCCcceEEEEEEe
Q psy7036          10 SFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRG--ET-Q--L-SE-D--------TRTVMKTTPIGTNKYLVALELD   74 (254)
Q Consensus        10 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~--~~-~--~-~~-~--------~~~~~~~~~~~~~~~~~~l~i~   74 (254)
                      .+++.|....+.+|++|+|.|... .....+.|||.  |+ +  + .. .        .........  .......|.|.
T Consensus         2 ~V~QsP~~~~~~~G~~v~l~C~~~-~~~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~L~i~   78 (113)
T d1j8he1           2 KVTQSSRYLVKRTGEKVFLECVQD-MDHENMFWYRQDPGLGLRLIYFSYDVKMKEKGDIPEGYSVSR--EKKERFSLILE   78 (113)
T ss_dssp             CEEESCSEEEEETTCCEEECEEES-SCCSEEEEEEEETTTEEEEEEEESSTTCCEECSCCTTEEEEC--SSTTBCEEEES
T ss_pred             EEEccCCEEEECCCCCEEEEEEEc-CCccEEEeEEecCCCCcceeeeeeeeeeeecccccccceEEe--ccCcEeeeEec
Confidence            356778888999999999999864 34457899972  21 1  1 00 0        001111111  11222479999


Q ss_pred             ccCCCCCeEEEEEEEc
Q psy7036          75 DVIETDAGLYKVKAKN   90 (254)
Q Consensus        75 ~~~~~d~G~Y~C~~~~   90 (254)
                      +++.+|+|.|.|.+..
T Consensus        79 ~~~~~Dsa~YyCa~~~   94 (113)
T d1j8he1          79 SASTNQTSMYLCASSS   94 (113)
T ss_dssp             SCCGGGCEEEEEEEEC
T ss_pred             cCccCCcccEEeeEcc
Confidence            9999999999998874

>d1q0xl2 b.1.1.2 (L:108-212) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.75  E-value=4.2e-08  Score=58.84  Aligned_cols=88  Identities=14%  Similarity=0.108  Sum_probs=57.6

Q ss_pred             CCCCeeEeCCCceeecCCCeEEEEEEEeeC-C-CCceEEEeCCEEeeeCCc-ceEEEeecCCcceEEEEEEeccCCCCCe
Q psy7036           6 DFAPSFTQKPQLRQEDEGNRLIFECQLLCN-P-KPDIVWFRGETQLSEDTR-TVMKTTPIGTNKYLVALELDDVIETDAG   82 (254)
Q Consensus         6 ~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~-~-~~~v~W~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~i~~~~~~d~G   82 (254)
                      ..+|.+...+.......++.++|.|.+.|. | ...|+|++||..+..... .......++.....+.|.|..-......
T Consensus         3 ~~~P~V~l~~ps~~~~~~~~~tl~C~v~~f~P~~i~v~W~~~g~~~~~~~~t~~~~~~~dgtys~~S~L~v~~~~w~~~~   82 (102)
T d1q0xl2           3 KSSPTVTLFPPSSEELSTAKATLVCTITDFYPGVVTVDWKVDGTPVTAGMETTQPSKQSNNKYMASSYLTLTARAWERHS   82 (102)
T ss_dssp             CBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEECTTSCEEEEEEEEEEHHHHTTCC
T ss_pred             CCCCEEEEECCCHHHhCCCeEEEEEEEeeeeCCCCEEEEEECCEECCCCeEecccEEcCCCCEEEEEEEEECHHHhCCCC
Confidence            346766554433223346789999999884 4 468999999998754321 1222233444456667888777666778


Q ss_pred             EEEEEEEcCCC
Q psy7036          83 LYKVKAKNKMG   93 (254)
Q Consensus        83 ~Y~C~~~~~~~   93 (254)
                      .|+|.|.+...
T Consensus        83 ~ytC~V~H~~~   93 (102)
T d1q0xl2          83 SYSCQVTHEGH   93 (102)
T ss_dssp             EEEEEEEETTE
T ss_pred             EEEEEEEECCc
Confidence            99999987653

>d1ypzf1 b.1.1.1 (F:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=98.74  E-value=5.8e-08  Score=59.90  Aligned_cols=80  Identities=14%  Similarity=0.213  Sum_probs=51.6

Q ss_pred             eeEeCCCceeecCCCeEEEEEEEeeC--CCCceEEEeC--C---EEee---e--------CCcceEEEeecCCcceEEEE
Q psy7036          10 SFTQKPQLRQEDEGNRLIFECQLLCN--PKPDIVWFRG--E---TQLS---E--------DTRTVMKTTPIGTNKYLVAL   71 (254)
Q Consensus        10 ~~~~~~~~~~v~~g~~v~l~C~~~~~--~~~~v~W~~~--~---~~~~---~--------~~~~~~~~~~~~~~~~~~~l   71 (254)
                      ++.+.+..+...+|++|+|.|.+.+.  ....+.||+.  |   +.+.   .        ....+.....+ .....+.|
T Consensus         3 kl~Q~~~sv~~~~G~svtL~C~~~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~r~~~s~~-~~~~~~~L   81 (120)
T d1ypzf1           3 KLEQPEISISRPRDETAQISCKVFIESFRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKN-PSASTSIL   81 (120)
T ss_dssp             SEECSCSEEEEETTSCEEEEEEECCGGGGGCCEEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEEC-CTTTEEEE
T ss_pred             CeEcCCCEEEecCCCcEEEEEEEecccccCCcccEEEeCCcccccccccccccccceeeeccccccccccc-cccccccc
Confidence            45667777788899999999998653  2456899982  1   1121   0        11112222111 22234579


Q ss_pred             EEeccCCCCCeEEEEEEEc
Q psy7036          72 ELDDVIETDAGLYKVKAKN   90 (254)
Q Consensus        72 ~i~~~~~~d~G~Y~C~~~~   90 (254)
                      .|.+++.+|+|.|.|....
T Consensus        82 ~I~~l~~~Dsa~YyCA~~~  100 (120)
T d1ypzf1          82 TIYSLEEEDEAIYYCSYGE  100 (120)
T ss_dssp             EECSCCGGGCSEEEEEECC
T ss_pred             cccccccccceeEEEEEcC
Confidence            9999999999999998764

>d1ugna2 b.1.1.4 (A:98-195) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.73  E-value=5.1e-08  Score=57.84  Aligned_cols=81  Identities=10%  Similarity=0.176  Sum_probs=52.1

Q ss_pred             CCCeeEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEE
Q psy7036           7 FAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKV   86 (254)
Q Consensus         7 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C   86 (254)
                      ..|.+...|.. .|..|++|+|.|... .....+.++|+|...........   ........+.+.|.+++..|+|.|+|
T Consensus         3 pkPsLsa~P~~-~v~~G~~VTL~C~~~-~~~~~f~L~k~g~~~~~~~~~~~---~~~~~~~~a~F~l~~v~~~~~G~Y~C   77 (98)
T d1ugna2           3 IKPTLSAQPSP-VVNSGGNVTLQCDSQ-VAFDGFILCKEGEDEHPQCLNSQ---PHARGSSRAIFSVGPVSPSRRWWYRC   77 (98)
T ss_dssp             CCCEEEEESCS-EEETTCCEEEEEECS-SCCSEEEEEEC------CEEEC---------CCEEEEEECCCCTTSCEEEEE
T ss_pred             CCCEEEeeCCC-ccCCCCcEEEEeCCC-CCCCEEEEEECCCcCCcEeeeeE---EcCCCceEEEEEeeecccCCCeEEEE
Confidence            47888888866 588999999999875 45567888898775322111000   01111223479999999999999999


Q ss_pred             EEEcCC
Q psy7036          87 KAKNKM   92 (254)
Q Consensus        87 ~~~~~~   92 (254)
                      ......
T Consensus        78 ~y~~~~   83 (98)
T d1ugna2          78 YAYDSN   83 (98)
T ss_dssp             EEECTT
T ss_pred             eeEcCC
Confidence            876543

>d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car), domain 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Coxsackie virus and adenovirus receptor (Car), domain 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.72  E-value=3e-08  Score=62.00  Aligned_cols=87  Identities=21%  Similarity=0.363  Sum_probs=55.6

Q ss_pred             eeeecCCCeEEEEEEEeeCCC----CeEEEEECCEecc-------------------cCCcceEEEcC-CCCceeeEEEE
Q psy7036         121 IRQEDDGKRLLFECRIQADPA----PTVIWSHSGVQVK-------------------EDKRHKFSIDK-DGHSYFASLEI  176 (254)
Q Consensus       121 ~~~~~~g~~~~l~C~~~~~~~----~~~~W~~~~~~~~-------------------~~~~~~~~~~~-~~~~~~~~l~i  176 (254)
                      .+...+|+++.|.|.....+.    ..+.|++......                   .....+..... +.....+.|.|
T Consensus        13 ~v~~~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I   92 (124)
T d1eaja_          13 MIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDDYYPDLKGRVHFTSNDLKSGDASINV   92 (124)
T ss_dssp             EEEEETTSCEEECCBEECCTTCCSCEEEEEEEEETTSSCCSEEEEEEETTEEECTTSSTTTTTEEECCSCGGGTBCCEEE
T ss_pred             eEEEECCCcEEEeEEEecccCCCCcEEEEEEEeCCCCcceeEEEEEEeCCccccccCcccccceEEEccCCCCCEEEEEE
Confidence            456778999999999865432    2488986321100                   00011111111 11122347999


Q ss_pred             ccCCCCCceeEEEEEEcCCCcceEEEEEEEe
Q psy7036         177 IDVTIEDAGKYKVTAKNELGESNATISLNFD  207 (254)
Q Consensus       177 ~~~~~~d~G~y~C~~~~~~~~~~~~~~~~v~  207 (254)
                      .+++.+|+|.|.|.+.+..+.....+.|.|.
T Consensus        93 ~~v~~~D~G~Y~C~v~~~~~~~~~~~~L~V~  123 (124)
T d1eaja_          93 TNLQLSDIGTYQCKVKKAPGVANKKIHLVVL  123 (124)
T ss_dssp             CSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             cccEEccCEEEEEEEEECCCeEEeEEEEEEE
Confidence            9999999999999999987777777777664

>d1w72l1 b.1.1.1 (L:1-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=98.72  E-value=2.7e-08  Score=60.24  Aligned_cols=74  Identities=11%  Similarity=0.146  Sum_probs=48.4

Q ss_pred             CCceeecCCCeEEEEEEEeeCCCCceEEEeC--CE---Eee-------eCCcceEEEeecCCcceEEEEEEeccCCCCCe
Q psy7036          15 PQLRQEDEGNRLIFECQLLCNPKPDIVWFRG--ET---QLS-------EDTRTVMKTTPIGTNKYLVALELDDVIETDAG   82 (254)
Q Consensus        15 ~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~--~~---~~~-------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G   82 (254)
                      |..+.+.+|++|+|.|.........+.||+.  ++   .+-       .....+......   .....|.|.+++.+|+|
T Consensus         7 p~sl~~~~G~svtl~C~~~~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~---~~~~~L~I~~l~~~Dsa   83 (109)
T d1w72l1           7 PPSVSVAPGQTARITCGGNNIGSRSVHWYQQKPGQAPVLVVYDDSDRPSGIPERFSGSNS---GNMATLTISRVEAGDEA   83 (109)
T ss_dssp             CSEEEECTTSCEEEEEECTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEE---TTEEEEEESSCCGGGCE
T ss_pred             CCeEEECCCCCEEEEEEcCCCCCcceeeeeccccceeEEEEEccccCCCceeeeEeeecC---CCccceEEeeeccCCCE
Confidence            4467899999999999975444456999973  21   110       111111211111   22448999999999999


Q ss_pred             EEEEEEEcC
Q psy7036          83 LYKVKAKNK   91 (254)
Q Consensus        83 ~Y~C~~~~~   91 (254)
                      .|.|.+...
T Consensus        84 vYyCA~~~~   92 (109)
T d1w72l1          84 DYYCQVWDS   92 (109)
T ss_dssp             EEEEEEEET
T ss_pred             EEEEEecCC
Confidence            999988644

>d1lgva1 b.1.1.1 (A:1-112) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 4 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 4 [TaxId: 9606]

Probab=98.71  E-value=3.4e-08  Score=60.41  Aligned_cols=79  Identities=14%  Similarity=0.271  Sum_probs=51.0

Q ss_pred             eeEeCCCceeecCCCeEEEEEEEeeC---CCCceEEEeC--CE---Eee-------eCCcceEEEeecCCcceEEEEEEe
Q psy7036          10 SFTQKPQLRQEDEGNRLIFECQLLCN---PKPDIVWFRG--ET---QLS-------EDTRTVMKTTPIGTNKYLVALELD   74 (254)
Q Consensus        10 ~~~~~~~~~~v~~g~~v~l~C~~~~~---~~~~v~W~~~--~~---~~~-------~~~~~~~~~~~~~~~~~~~~l~i~   74 (254)
                      .+++ |..+.+.+|++|+|.|...+.   ....+.|||.  ++   .+.       .....++......   ....|.|.
T Consensus         3 ~ltQ-P~s~~~~~G~svtl~C~~~~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~L~I~   78 (112)
T d1lgva1           3 ALTQ-PASVSGSPGQSITVSCTGVSSIVGSYNLVSWYQQHPGKAPKLLTYEVNKRPSGVSDRFSGSKSG---NSASLTIS   78 (112)
T ss_dssp             CBBC-CSEEEECTTCCEEEEEECCCCSSSCCCCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEET---TEEEEEEC
T ss_pred             CccC-CCcEEECCCCCEEEEEEeCCCCCCCCCcceeeeeeecccceeeeeeeccccCCCcccEEEECCC---CEeeEEeC
Confidence            3455 678899999999999998653   2345899972  11   111       0111122222211   23489999


Q ss_pred             ccCCCCCeEEEEEEEcCC
Q psy7036          75 DVIETDAGLYKVKAKNKM   92 (254)
Q Consensus        75 ~~~~~d~G~Y~C~~~~~~   92 (254)
                      +++.+|+|.|.|......
T Consensus        79 ~l~~~Dsa~YyCa~~~~~   96 (112)
T d1lgva1          79 GLQAEDEADYYCSSYDGS   96 (112)
T ss_dssp             SCCGGGCEEEEEEEECSS
T ss_pred             cCccccCEEEEEeeecCC
Confidence            999999999999887544

>d1fp5a2 b.1.1.2 (A:439-543) Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.71  E-value=2.6e-08  Score=60.07  Aligned_cols=87  Identities=14%  Similarity=0.175  Sum_probs=56.9

Q ss_pred             CCCeeEeCCCceeecCCCeEEEEEEEee-CC-CCceEEEeCCEEeeeCCcc--eEEEeecCCcceEEEEEEeccCCCCCe
Q psy7036           7 FAPSFTQKPQLRQEDEGNRLIFECQLLC-NP-KPDIVWFRGETQLSEDTRT--VMKTTPIGTNKYLVALELDDVIETDAG   82 (254)
Q Consensus         7 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~-~~-~~~v~W~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~i~~~~~~d~G   82 (254)
                      .+|.+...+.......++.++|.|.+.+ .| ...|+|++||..+......  ......++.....+.|.|......+..
T Consensus         3 ~~P~V~v~~p~~~~~~~~~vtL~Clv~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~~~gtys~~S~L~v~~~~W~~g~   82 (105)
T d1fp5a2           3 AAPEVYAFATPEWPGSRDKRTLACLIQNFMPEDISVQWLHNEVQLPDARHSTTQPRKTKGSGFFVFSRLEVTRAEWEQKD   82 (105)
T ss_dssp             BCCEEEEEECCCCSSSSCCEEEEEEEEEEBSSCCEEEEEETTEECCGGGEEECCCEECSSSCEEEEEEEEECHHHHTTGG
T ss_pred             CCCEEEEECCChHHhcCCcEEEEEEEEeeeCCCcEEEEEECCEECCCceeEeeeeEecCCCCEEEEEEEEECHHHcCCCC
Confidence            3566554433334456778999999987 44 4689999999987654321  122233344445567888766666667


Q ss_pred             EEEEEEEcCCC
Q psy7036          83 LYKVKAKNKMG   93 (254)
Q Consensus        83 ~Y~C~~~~~~~   93 (254)
                      .|+|.+.+...
T Consensus        83 ~ytC~V~H~~l   93 (105)
T d1fp5a2          83 EFICRAVHEAA   93 (105)
T ss_dssp             GEEEEEECTTS
T ss_pred             EEEEEEEECCC
Confidence            89999997554

>d1muja1 b.1.1.2 (A:84-183) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-A group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-A group [TaxId: 10090]

Probab=98.71  E-value=7.9e-08  Score=57.08  Aligned_cols=83  Identities=18%  Similarity=0.158  Sum_probs=53.6

Q ss_pred             CCCeeEeCCCceeecCCCeEEEEEEEeeC-C-CCceEEEeCCEEeeeCCcc-eEEEeecCCcceEEEEEEeccCCCCCeE
Q psy7036           7 FAPSFTQKPQLRQEDEGNRLIFECQLLCN-P-KPDIVWFRGETQLSEDTRT-VMKTTPIGTNKYLVALELDDVIETDAGL   83 (254)
Q Consensus         7 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~-~-~~~v~W~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~i~~~~~~d~G~   83 (254)
                      .+|.+.+.+.. .+..|+.++|.|.+.|. | ...|+|++||..+..+... ......++.....+.|.+.   .++.+.
T Consensus         2 ~pP~V~v~p~~-~~~~~~~~tL~C~v~gFyP~~i~v~W~~ng~~v~~~~~~t~~~~~~dgtf~~~s~l~v~---~~~~~~   77 (100)
T d1muja1           2 EAPQATVFPKS-PVLLGQPNTLICFVDNIFPPVINITWLRNSKSVADGVYETSFFVNRDYSFHKLSYLTFI---PSDDDI   77 (100)
T ss_dssp             CCCEEEEEESS-CCCTTSCEEEEEEEEEECSSCCEEEEEESSSBCCSSEEECCCEECTTSCEEEEEEEEEC---CCTTCC
T ss_pred             CCCEEEEEcCC-ccccCCCEEEEEEEEeEECCCCEEEEEeCCeeccCCceeeeeEECCCCCEEEEEEeEEc---CCCCCE
Confidence            46887776544 45678999999999884 4 5789999999877543211 1222222333334445443   456778


Q ss_pred             EEEEEEcCCC
Q psy7036          84 YKVKAKNKMG   93 (254)
Q Consensus        84 Y~C~~~~~~~   93 (254)
                      |+|++.+..-
T Consensus        78 ytC~V~H~sl   87 (100)
T d1muja1          78 YDCKVEHWGL   87 (100)
T ss_dssp             EEEEEECTTS
T ss_pred             EEEEEEECCC
Confidence            9999997653

>d2gj6d1 b.1.1.1 (D:15-114) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.71  E-value=4.8e-08  Score=57.66  Aligned_cols=66  Identities=18%  Similarity=0.325  Sum_probs=44.0

Q ss_pred             CCeEEEEEEEeeCCCCceEEEeC--C---EEe--------eeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEE
Q psy7036          23 GNRLIFECQLLCNPKPDIVWFRG--E---TQL--------SEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAK   89 (254)
Q Consensus        23 g~~v~l~C~~~~~~~~~v~W~~~--~---~~~--------~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~   89 (254)
                      |++|+|.|.........+.|||.  +   +.+        ....++.....   ......+|.|.+++++|+|.|.|.+.
T Consensus         1 G~~vtl~C~~~~~~~~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~rf~~~~~---~~~~~~sL~I~~~~~~Dsg~YyCa~~   77 (94)
T d2gj6d1           1 GAIASLNCTYSDRGSQSFFWYRQYSGKSPELIMSIYSNGDKEDGRFTAQLN---KASQYVSLLIRDSQPSDSATYLCAVT   77 (94)
T ss_dssp             TSCEEEEEEECCTTCCEEEEEEECTTSCCEEEEEECSSEEEEETTEEEEEE---TTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             CccEEEEEEEccccCCcEEEEEECCCcccccceeeeeeccCCCCcEEEEec---CCCCEEeEEeeccccCcCccceeeEe
Confidence            78999999987666678999972  1   111        11122222221   11224589999999999999999887


Q ss_pred             cC
Q psy7036          90 NK   91 (254)
Q Consensus        90 ~~   91 (254)
                      ..
T Consensus        78 ~~   79 (94)
T d2gj6d1          78 TD   79 (94)
T ss_dssp             SS
T ss_pred             cC
Confidence            43

>d1smoa_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.70  E-value=4.1e-08  Score=60.22  Aligned_cols=75  Identities=15%  Similarity=0.153  Sum_probs=46.9

Q ss_pred             ceeecCCCeEEEEEEEee--CCCCceEEEeC--C---EEeeeC----------CcceEEEeecCCcceEEEEEEeccCCC
Q psy7036          17 LRQEDEGNRLIFECQLLC--NPKPDIVWFRG--E---TQLSED----------TRTVMKTTPIGTNKYLVALELDDVIET   79 (254)
Q Consensus        17 ~~~v~~g~~v~l~C~~~~--~~~~~v~W~~~--~---~~~~~~----------~~~~~~~~~~~~~~~~~~l~i~~~~~~   79 (254)
                      ...+.+|++|+|.|...+  .....+.|||.  +   ..+...          ...++.... ........|.|.+++.+
T Consensus         8 ~~~v~eG~svtl~C~~~~~~~~~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~-~~~~~~~~Lti~~l~~~   86 (113)
T d1smoa_           8 KYELKEGQTLDVKCDYTLEKFASSQKAWQIIRDGEMPKTLACTERPSKNSHPVQVGRIILED-YHDHGLLRVRMVNLQVE   86 (113)
T ss_dssp             EEECCTTCCEEEEEECCHHHHTTSCEEEEEECTTSCCEEEEECCSSCCSSCCEEETTEEEEE-ETTTTEEEEEECSCCGG
T ss_pred             cEEEccCCCEEEEEEeCCCCCCCCEEEEEECCCCCCCEEEEecCCCCceEcceECCeEEEEE-ECCCCEEEEEEccCCcc
Confidence            356789999999998754  24556889973  2   112110          001111111 12233457999999999


Q ss_pred             CCeEEEEEEEcCC
Q psy7036          80 DAGLYKVKAKNKM   92 (254)
Q Consensus        80 d~G~Y~C~~~~~~   92 (254)
                      |+|.|.|.+....
T Consensus        87 Dsg~Y~Cav~~~~   99 (113)
T d1smoa_          87 DSGLYQCVIYQPP   99 (113)
T ss_dssp             GCEEEEEEECCTT
T ss_pred             cCceEEEEEECCC
Confidence            9999999886543

>d2rhea_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=98.69  E-value=6.8e-08  Score=58.95  Aligned_cols=75  Identities=17%  Similarity=0.269  Sum_probs=48.8

Q ss_pred             EeCCCceeecCCCeEEEEEEEeeC--CCCceEEEeCC-----EEeee-------CCcceEEEeecCCcceEEEEEEeccC
Q psy7036          12 TQKPQLRQEDEGNRLIFECQLLCN--PKPDIVWFRGE-----TQLSE-------DTRTVMKTTPIGTNKYLVALELDDVI   77 (254)
Q Consensus        12 ~~~~~~~~v~~g~~v~l~C~~~~~--~~~~v~W~~~~-----~~~~~-------~~~~~~~~~~~~~~~~~~~l~i~~~~   77 (254)
                      ++.| ++.+.+|++|+|.|.+.+.  ....+.||+..     ..+..       ....+......   .....|.|.+++
T Consensus         5 tQ~p-s~~v~~G~svtL~C~~s~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~---~~~~~L~I~~v~   80 (114)
T d2rhea_           5 TQPP-SASGTPGQRVTISCTGSATDIGSNSVIWYQQVPGKAPKLLIYYNDLLPSGVSDRFSASKS---GTSASLAISGLE   80 (114)
T ss_dssp             BCCS-EEEECTTCCEEEEEECCTTTTTTSCEEEEECCTTSCCEEEEBTTTBCCTTCCTTEEEEEE---TTEEEEEESSCC
T ss_pred             ccCC-cEEeCCCCCEEEEEEECCccccCCcccceeeecccceEEEEEEeeeeccCCCCcceecCC---CCeeeeEecccC
Confidence            3444 6789999999999998653  34568999742     11110       01111211111   124489999999


Q ss_pred             CCCCeEEEEEEEc
Q psy7036          78 ETDAGLYKVKAKN   90 (254)
Q Consensus        78 ~~d~G~Y~C~~~~   90 (254)
                      .+|++.|.|....
T Consensus        81 ~~DsA~YyCA~~~   93 (114)
T d2rhea_          81 SEDEADYYCAAWN   93 (114)
T ss_dssp             GGGCEEEEEEEEE
T ss_pred             cccCceEEEeecC
Confidence            9999999998764

>d1olla2 b.1.1.4 (A:96-188) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.68  E-value=1.4e-08  Score=59.59  Aligned_cols=72  Identities=15%  Similarity=0.233  Sum_probs=52.3

Q ss_pred             CCCeeEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEE
Q psy7036           7 FAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKV   86 (254)
Q Consensus         7 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C   86 (254)
                      .+|.+...|.. .|..|++|+|.|... .....+.|+|+|......      ....   ...+.+.|.+++..|+|.|+|
T Consensus         3 pkPsLsa~P~~-~V~~G~~VTL~C~~~-~~~~~f~L~Keg~~~~~~------~~~~---~~~a~F~i~~v~~~~~G~Y~C   71 (93)
T d1olla2           3 DTPTLSVHPGP-EVISGEKVTFYCRLD-TATSMFLLLKEGRSSHVQ------RGYG---KVQAEFPLGPVTTAHRGTYRC   71 (93)
T ss_dssp             CCCEEEEESCS-EEETTCEEEEEEECS-SSCSEEEEEEESSSCEEE------EEEC---SSEEEEEEEECCGGGCEEEEE
T ss_pred             CCCEEEEeCCC-cccCCCcEEEEECCC-CCCCEEEEEECCCcccee------ecCC---CceeEEEecccChhcCceEEE
Confidence            47888888865 578999999999875 456679999977532111      1111   123379999999999999999


Q ss_pred             EEE
Q psy7036          87 KAK   89 (254)
Q Consensus        87 ~~~   89 (254)
                      ...
T Consensus        72 ~~~   74 (93)
T d1olla2          72 FGS   74 (93)
T ss_dssp             ECE
T ss_pred             EeE
Confidence            644

>d1kgcd1 b.1.1.1 (D:2-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.68  E-value=5.5e-08  Score=59.46  Aligned_cols=75  Identities=15%  Similarity=0.237  Sum_probs=50.0

Q ss_pred             eCCCceeecCCCeEEEEEEEeeCC-CCceEEEeC--CE---Eee-------eCCcceEEEeecCCcceEEEEEEeccCCC
Q psy7036          13 QKPQLRQEDEGNRLIFECQLLCNP-KPDIVWFRG--ET---QLS-------EDTRTVMKTTPIGTNKYLVALELDDVIET   79 (254)
Q Consensus        13 ~~~~~~~v~~g~~v~l~C~~~~~~-~~~v~W~~~--~~---~~~-------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~   79 (254)
                      ..|..+.+.+|++|+|.|...+.. ...+.|||.  |+   .+.       .....+....   .+.....|.|.+++.+
T Consensus         3 ~qP~~~~~~~G~svtl~C~~s~~~~~~~~~WYrQ~pg~~~~~i~~~~~~~~~~~~~~~~~~---~~~~~~~L~i~~~~~~   79 (112)
T d1kgcd1           3 TQPNSMESNEEEPVHLPCNHSTISGTDYIHWYRQLPSQGPEYVIHGLTSNVNNRMASLAIA---EDRKSSTLILHRATLR   79 (112)
T ss_dssp             ECCSEEEEETTSCEEEEEEESCCCTTCCEEEEEECTTSCCEEEEEESSSSEECSSEEEEEC---TTSSEEEEEESSCCGG
T ss_pred             ECCCEEEECCCCCEEEEEEEeCCCccccEEEEEECCCCCcceeeeecceeccccccceeec---ccCCeeEEEEeecccc
Confidence            456678899999999999986543 345899983  21   111       1111222222   2233457999999999


Q ss_pred             CCeEEEEEEEc
Q psy7036          80 DAGLYKVKAKN   90 (254)
Q Consensus        80 d~G~Y~C~~~~   90 (254)
                      |+|.|.|.+..
T Consensus        80 Dsa~YyCa~~~   90 (112)
T d1kgcd1          80 DAAVYYCILPL   90 (112)
T ss_dssp             GCEEEEEECCC
T ss_pred             cceeEeeeEec
Confidence            99999998753

>d1nfde1 b.1.1.1 (E:2-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=98.68  E-value=3.3e-08  Score=59.88  Aligned_cols=75  Identities=15%  Similarity=0.189  Sum_probs=48.6

Q ss_pred             CCCceeecCCCeEEEEEEEeeCCCCceEEEeC--CE---Eee-------eCCcceEEEeecCCcceEEEEEEeccCCCCC
Q psy7036          14 KPQLRQEDEGNRLIFECQLLCNPKPDIVWFRG--ET---QLS-------EDTRTVMKTTPIGTNKYLVALELDDVIETDA   81 (254)
Q Consensus        14 ~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~--~~---~~~-------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~   81 (254)
                      .|..+.+.+|++|+|.|.........+.||+.  |+   .+-       .....++.....   .....|.|.+++.+|+
T Consensus         5 QP~s~~~~~G~svtl~C~~~~~~~~~i~WYrQ~~g~~p~~l~y~~~~~~~~~~~rf~~~~~---~~~~~L~I~~l~~~Ds   81 (108)
T d1nfde1           5 QPSSASVTVGETVKITCSGDQLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTS---GTTATLTISGAQPEDE   81 (108)
T ss_dssp             CCSEEEEETTSCCCEEEEETTGGGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEEE---TTEEEEEETTCCGGGC
T ss_pred             CCCeeEECCCCCEEEEEECCCCCCccEEEEecccccceeeeccccccccccccceeeecCC---CCEeeeeEcCccccCC
Confidence            36678899999999999875434446899972  22   111       011112222211   1234899999999999


Q ss_pred             eEEEEEEEcC
Q psy7036          82 GLYKVKAKNK   91 (254)
Q Consensus        82 G~Y~C~~~~~   91 (254)
                      |.|.|.+...
T Consensus        82 a~YyCA~~~~   91 (108)
T d1nfde1          82 AAYYCLSSYG   91 (108)
T ss_dssp             SEEEEEEEET
T ss_pred             ceEEEEeecC
Confidence            9999987643

>d1hxma1 b.1.1.1 (A:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=98.67  E-value=7.2e-08  Score=59.56  Aligned_cols=78  Identities=18%  Similarity=0.209  Sum_probs=52.6

Q ss_pred             eeEeCCCceeecCCCeEEEEEEEeeCC--CCceEEEeC--C---EEeee---------CCcceEEEeecCCcceEEEEEE
Q psy7036          10 SFTQKPQLRQEDEGNRLIFECQLLCNP--KPDIVWFRG--E---TQLSE---------DTRTVMKTTPIGTNKYLVALEL   73 (254)
Q Consensus        10 ~~~~~~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~--~---~~~~~---------~~~~~~~~~~~~~~~~~~~l~i   73 (254)
                      .++..+..+.+.+|++++|+|.+.+..  ...+.|||.  |   ..+-.         ..++.......   .....|.|
T Consensus         3 ~vv~~~~sv~v~~G~~vtL~C~~s~~~~~~~~~~WyrQ~pg~~~~~l~~~~~~~~~~~~~r~~~s~~~~---~~~~~L~i   79 (120)
T d1hxma1           3 ELVPEHQTVPVSIGVPATLRCSMKGEAIGNYYINWYRKTQGNTMTFIYREKDIYGPGFKDNFQGDIDIA---KNLAVLKI   79 (120)
T ss_dssp             CEEESCSEEEEETTCCEEEEEEECSSCGGGSEEEEEEEESSSCSEEEEETTTEECTTTTTTEEEEEEGG---GTEEEEEE
T ss_pred             eEeccCCCEEECCCCCEEEEEEEeccCccCCcCeEEEccccccceeeeccccceeecccccceeecccc---ccceeccc
Confidence            356677788899999999999997543  356899972  2   11111         12222222211   22458999


Q ss_pred             eccCCCCCeEEEEEEEc
Q psy7036          74 DDVIETDAGLYKVKAKN   90 (254)
Q Consensus        74 ~~~~~~d~G~Y~C~~~~   90 (254)
                      .+++.+|+|.|.|....
T Consensus        80 ~~~~~~Dsa~YyCA~~~   96 (120)
T d1hxma1          80 LAPSERDEGSYYCACDT   96 (120)
T ss_dssp             SSCCGGGCEEEEEEEEC
T ss_pred             ccccccCCceeecCccc
Confidence            99999999999998764

>d1cd0a_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=98.67  E-value=5.1e-08  Score=59.51  Aligned_cols=74  Identities=12%  Similarity=0.240  Sum_probs=49.3

Q ss_pred             CCCceeecCCCeEEEEEEEeeCC--CCceEEEeC--CEEe----------e--eCCcceEEEeecCCcceEEEEEEeccC
Q psy7036          14 KPQLRQEDEGNRLIFECQLLCNP--KPDIVWFRG--ETQL----------S--EDTRTVMKTTPIGTNKYLVALELDDVI   77 (254)
Q Consensus        14 ~~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~--~~~~----------~--~~~~~~~~~~~~~~~~~~~~l~i~~~~   77 (254)
                      .|..+.+.+|++|+|.|...+..  ..-+.|||.  ++.+          .  ...++......   ......|.|.+++
T Consensus         6 QP~s~sv~~G~svtL~C~~s~~~~~~~~i~WyrQ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~L~i~~l~   82 (111)
T d1cd0a_           6 QPHSVSESPGKTVTISCTRSSGNIDSNYVQWYQQRPGSAPITVIYEDNQRPSGVPDRFAGSIDR---SSNSASLTISGLK   82 (111)
T ss_dssp             CCSEEEECTTSCEEEEEEESSSCGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEET---TTTEEEEEECSCC
T ss_pred             cCCeeEECCCCCEEEEEEECCCCccCceEEEeeeccCceeEeeeccccccCcccCCceeEeecC---CCCccccccccCC
Confidence            46778999999999999986533  335899973  2111          0  11222222221   1235589999999


Q ss_pred             CCCCeEEEEEEEc
Q psy7036          78 ETDAGLYKVKAKN   90 (254)
Q Consensus        78 ~~d~G~Y~C~~~~   90 (254)
                      .+|+|.|.|....
T Consensus        83 ~~Dsa~YyCA~~~   95 (111)
T d1cd0a_          83 TEDEADYYCQSYD   95 (111)
T ss_dssp             GGGCEEEEEEEEE
T ss_pred             cccCcEEEEeecc
Confidence            9999999998654

>d2cdeb1 b.1.1.1 (B:5-116) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.66  E-value=7.7e-08  Score=58.80  Aligned_cols=79  Identities=13%  Similarity=0.281  Sum_probs=50.6

Q ss_pred             eEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeCC--E---Eee---------e-CCcceEEEeecCCcceEEEEEEec
Q psy7036          11 FTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGE--T---QLS---------E-DTRTVMKTTPIGTNKYLVALELDD   75 (254)
Q Consensus        11 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~--~---~~~---------~-~~~~~~~~~~~~~~~~~~~l~i~~   75 (254)
                      +.+.|....+.+|++|+|.|... .....+.||+..  +   .+.         . .......  ..........|.|.+
T Consensus         1 V~QsP~~~~~~~G~svtL~C~~~-~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~L~i~~   77 (112)
T d2cdeb1           1 IYQTPRYLVIGTGKKITLECSQT-MGHDKMYWYQQDPGMELHLIHYSYGVNSTEKGDLSSEST--VSRIRTEHFPLTLES   77 (112)
T ss_dssp             EEEECSEEEEETTCCBCCEEEET-TCCSEEEEEEECTTSCCEEEEEESSTTCCEESSSCCCCE--ECCSSSSBCCEEBSS
T ss_pred             CEECCCEEEECCCCCEEEEEEEe-CCcccEEEEEEcCCCCcEEeeeeeccCccccccccccce--eecCCCCceEeeecc
Confidence            35678888899999999999975 334578999832  1   110         0 0000111  111112234799999


Q ss_pred             cCCCCCeEEEEEEEcCC
Q psy7036          76 VIETDAGLYKVKAKNKM   92 (254)
Q Consensus        76 ~~~~d~G~Y~C~~~~~~   92 (254)
                      ++.+|+|.|.|.+....
T Consensus        78 ~~~~Dsa~YyCA~~~~~   94 (112)
T d2cdeb1          78 ARPSHTSQYLCASSENI   94 (112)
T ss_dssp             CCTTTCSEEEEEEECSS
T ss_pred             ccccccccEEEEEecCC
Confidence            99999999999887543

>d1ncna_ b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD86 (b7-2), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.66  E-value=8.2e-08  Score=58.57  Aligned_cols=70  Identities=19%  Similarity=0.164  Sum_probs=42.2

Q ss_pred             eeecCCCeEEEEEEEeeCC---CCceEE--EeCCEE-ee-------------eCCcceEEEeecCCcceEEEEEEeccCC
Q psy7036          18 RQEDEGNRLIFECQLLCNP---KPDIVW--FRGETQ-LS-------------EDTRTVMKTTPIGTNKYLVALELDDVIE   78 (254)
Q Consensus        18 ~~v~~g~~v~l~C~~~~~~---~~~v~W--~~~~~~-~~-------------~~~~~~~~~~~~~~~~~~~~l~i~~~~~   78 (254)
                      +.+..|++|+|.|......   ...+.|  .+++.. +.             .....+.....  .   ..+|.|.+++.
T Consensus         4 V~a~~G~tv~L~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~r~~~~~--~---~~sL~I~~v~~   78 (110)
T d1ncna_           4 IQAYFNETADLPCQFANSQNQSLSELVVFWQDQENLVLNEVYLGKEKFDSVHSKYMGRTSFDS--D---SWTLRLHNLQI   78 (110)
T ss_dssp             EEEETTSCEEEECCCCCTTCCCGGGEEEEEEETTCCEEEEEETTEECCSSBCTTTTTSEEEET--T---TTEEEECSCCG
T ss_pred             EEEEeCCcEEEEEEEeCCCCCCcceeEEEeeccccceEEEEeCCceecccCCcceEEEEeccC--C---eEEEEECCCCh
Confidence            4678999999999985432   223444  443321 10             00111111111  1   12799999999


Q ss_pred             CCCeEEEEEEEcCC
Q psy7036          79 TDAGLYKVKAKNKM   92 (254)
Q Consensus        79 ~d~G~Y~C~~~~~~   92 (254)
                      +|+|.|.|.+....
T Consensus        79 ~D~G~Y~C~V~~~~   92 (110)
T d1ncna_          79 KDKGLYQCIIHHKK   92 (110)
T ss_dssp             GGCEEEEEEEEEEC
T ss_pred             hHCEEEEEEEEecC
Confidence            99999999987443

>d1xeda_ b.1.1.1 (A:) Polymeric-immunoglobulin receptor, PIGR {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Polymeric-immunoglobulin receptor, PIGR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.65  E-value=7.2e-08  Score=59.44  Aligned_cols=90  Identities=13%  Similarity=0.223  Sum_probs=53.5

Q ss_pred             CCCeeeecCCCeEEEEEEEeeCC---CCeEEEEECCEe-----c-------ccCCcceEEEcCCCCceeeEEEEccCCCC
Q psy7036         118 KPSIRQEDDGKRLLFECRIQADP---APTVIWSHSGVQ-----V-------KEDKRHKFSIDKDGHSYFASLEIIDVTIE  182 (254)
Q Consensus       118 ~~~~~~~~~g~~~~l~C~~~~~~---~~~~~W~~~~~~-----~-------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~  182 (254)
                      .+..+.+.+|++++|.|......   ...+.|+|....     +       ......+.....+......+|.|.+++.+
T Consensus         5 ~P~~V~~~~G~svtL~C~y~~~~~~~~~~~~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~l~~~   84 (116)
T d1xeda_           5 GPEEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLSQD   84 (116)
T ss_dssp             CCSEEEEETTCCEEEEEECCCCHHHHHSCEEEEEC-----CEEEEESSSCBCTTTTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             CCCEEEEcCCCCEEEEEEECCCCCccceeEEEEEcCCCCCcEEEEECcccccceecCCccEeeeCCCCEEEEEEhhhCcC
Confidence            45667888999999999864321   235789874311     0       00111111111112222348999999999


Q ss_pred             CceeEEEEEEcCCCcceEEEEEEEe
Q psy7036         183 DAGKYKVTAKNELGESNATISLNFD  207 (254)
Q Consensus       183 d~G~y~C~~~~~~~~~~~~~~~~v~  207 (254)
                      |+|.|.|.+..........+.|.|.
T Consensus        85 DsG~Y~C~v~~~~~~~~~~v~L~V~  109 (116)
T d1xeda_          85 DSGRYKCGLGINSRGLSFDVSLEVL  109 (116)
T ss_dssp             GCEEEEEEESCGGGCCEEEEEEEEE
T ss_pred             CCEEEEEEEEcCCCCceEeEEEEEE
Confidence            9999999986544333445666665

>d1nkra1 b.1.1.4 (A:6-101) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=98.65  E-value=1.6e-07  Score=55.25  Aligned_cols=78  Identities=12%  Similarity=0.072  Sum_probs=53.3

Q ss_pred             CCeeEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEE
Q psy7036           8 APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVK   87 (254)
Q Consensus         8 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~   87 (254)
                      .|.+...|.. .|..|++|+|.|... .....+.++|+|.........    .........+.+.|.+++..|+|.|+|.
T Consensus         2 KPsLsa~P~~-~V~~G~~VTl~C~~~-~~~~~f~L~keg~~~~~~~~~----~~~~~~~~~a~F~l~~v~~~~~G~Y~C~   75 (96)
T d1nkra1           2 KPSLLAHPGP-LVKSEETVILQCWSD-VMFEHFLLHREGMFNDTLRLI----GEHHDGVSKANFSISRMTQDLAGTYRCY   75 (96)
T ss_dssp             CCEEEEESCS-EEETTCCEEEEEEES-SCCSEEEEEEESSSCEEEEEE----CEEETTEEEEEEEESSCCGGGCEEEEEE
T ss_pred             CCEEEeeCCC-ccCCCCcEEEEECCC-CCCCEEEEEECCCcCCceeee----eeecCCceEEEEEEcccCcccCeEEEEE
Confidence            5888888854 688999999999975 456678999977522110000    0001122334799999999999999998


Q ss_pred             EEcC
Q psy7036          88 AKNK   91 (254)
Q Consensus        88 ~~~~   91 (254)
                      ....
T Consensus        76 y~~~   79 (96)
T d1nkra1          76 GSVT   79 (96)
T ss_dssp             EEBT
T ss_pred             EEcC
Confidence            7644

>d1dr9a1 b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD80, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.64  E-value=2.6e-08  Score=60.29  Aligned_cols=72  Identities=8%  Similarity=0.120  Sum_probs=47.7

Q ss_pred             eeecCCCeEEEEEEEeeCC----CCceEEEeCCEEeee----------CCcceEEEeecCCcceEEEEEEeccCCCCCeE
Q psy7036          18 RQEDEGNRLIFECQLLCNP----KPDIVWFRGETQLSE----------DTRTVMKTTPIGTNKYLVALELDDVIETDAGL   83 (254)
Q Consensus        18 ~~v~~g~~v~l~C~~~~~~----~~~v~W~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~   83 (254)
                      +++..|++++|.|......    ...+.|.+++..+..          ....+......+    ..+|.|.+++.+|+|.
T Consensus         4 Vt~~~G~~a~L~C~~~~~~~~~~~~~v~w~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~g----~~sL~I~~v~~~D~G~   79 (105)
T d1dr9a1           4 VTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITN----NLSIVILALRPSDEGT   79 (105)
T ss_dssp             EEEETTSCEEECCSCCCCTTHHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEEESTT----TTEEEECSCCGGGCEE
T ss_pred             EEEEeCCCEEEEEEECCcccceeEEEEEEEecceEEEEEEeccceeecceeeeeeeccCC----cEEEEECcCChHHCeE
Confidence            5678999999999875322    235788887765421          111222222211    2289999999999999


Q ss_pred             EEEEEEcCCC
Q psy7036          84 YKVKAKNKMG   93 (254)
Q Consensus        84 Y~C~~~~~~~   93 (254)
                      |.|.+.+..+
T Consensus        80 Y~C~V~~~~~   89 (105)
T d1dr9a1          80 YECVVLKYEK   89 (105)
T ss_dssp             EEEEEEECCT
T ss_pred             EEEEEEeCCC
Confidence            9999976543

>d1ospl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.64  E-value=2.6e-07  Score=55.69  Aligned_cols=75  Identities=19%  Similarity=0.252  Sum_probs=49.9

Q ss_pred             cCCCeeeecCCCeEEEEEEEeeCCCCeEEEEECC--Eec----------ccCCcceEEEcCCCCceeeEEEEccCCCCCc
Q psy7036         117 KKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSG--VQV----------KEDKRHKFSIDKDGHSYFASLEIIDVTIEDA  184 (254)
Q Consensus       117 ~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~--~~~----------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~  184 (254)
                      ..+..+.+.+|+.++|.|.........+.||+..  ...          ......++.....+..  ..|.|.+++.+|+
T Consensus         6 QsP~~ltv~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~i~~~~~~~~~~~~~rfs~~~~~~~--~~L~I~~~~~~Ds   83 (107)
T d1ospl1           6 QSSSSFSVSLGDRVTITCKASEDIYSRLAWYQQKPGNAPRLLISGATSLETWVPSRFSGSDSGKD--YTLSITSLQTEDV   83 (107)
T ss_dssp             CCCSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEECSSSS--EEEEESSCCGGGC
T ss_pred             eeCCEEEECCCCCEEEEEecCCCcccccEEEEcCCCccceeEEeeccccCCccccccceecCCCe--EEeEEcccccccC
Confidence            3456677889999999999766555579999831  110          1111223333332222  4799999999999


Q ss_pred             eeEEEEEEc
Q psy7036         185 GKYKVTAKN  193 (254)
Q Consensus       185 G~y~C~~~~  193 (254)
                      |.|.|.+..
T Consensus        84 a~YyCa~~~   92 (107)
T d1ospl1          84 ATYFCQQYW   92 (107)
T ss_dssp             SEEEEEECS
T ss_pred             CcEEEeecc
Confidence            999998654

>d1qfoa_ b.1.1.1 (A:) N-terminal domain of sialoadhesin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialoadhesin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.64  E-value=3.2e-08  Score=61.24  Aligned_cols=79  Identities=18%  Similarity=0.281  Sum_probs=49.0

Q ss_pred             eCCCceeecCCCeEEEEEEEeeC---C---CCceEEEeCCE----Ee-ee--------CCcceEEEeecCCcceEEEEEE
Q psy7036          13 QKPQLRQEDEGNRLIFECQLLCN---P---KPDIVWFRGET----QL-SE--------DTRTVMKTTPIGTNKYLVALEL   73 (254)
Q Consensus        13 ~~~~~~~v~~g~~v~l~C~~~~~---~---~~~v~W~~~~~----~~-~~--------~~~~~~~~~~~~~~~~~~~l~i   73 (254)
                      ..|+.+.+.+|++|+|.|.....   +   ...+.|++...    .+ ..        ....+.....+ .....++|.|
T Consensus         5 ~~P~~v~~~~G~~V~l~C~f~~p~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~sL~I   83 (118)
T d1qfoa_           5 SSPKNVQGLSGSCLLIPCIFSYPADVPVSNGITAIWYYDYSGKRQVVIHSGDPKLVDKRFRGRAELMGN-MDHKVCNLLL   83 (118)
T ss_dssp             ECCSEEEEETTSCEEECCEEECCTTSCC--CCEEEEEESTTTTCEEEEESSCGGGSCTTTTTTEEECSC-GGGTBCCEEE
T ss_pred             ECCCEEEEecCCcEEEEEEEeeccCCCCcceEEEEEEeeceeccceeeeeccccccccccCCCeEEEEe-CcCCEEEEEE
Confidence            45778899999999999998521   1   22456776321    11 11        11122222211 1223457999


Q ss_pred             eccCCCCCeEEEEEEEcCC
Q psy7036          74 DDVIETDAGLYKVKAKNKM   92 (254)
Q Consensus        74 ~~~~~~d~G~Y~C~~~~~~   92 (254)
                      .+++.+|+|.|.|.+....
T Consensus        84 ~~v~~~DsG~Y~C~v~~~~  102 (118)
T d1qfoa_          84 KDLKPEDSGTYNFRFEISD  102 (118)
T ss_dssp             CSCCGGGCEEEEEEEECC-
T ss_pred             CCCChhHCEEEEEEEEeCC
Confidence            9999999999999997543

>d1vcaa1 b.1.1.3 (A:91-199) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.63  E-value=7.9e-08  Score=58.44  Aligned_cols=74  Identities=14%  Similarity=0.082  Sum_probs=47.1

Q ss_pred             ecCCCeEEEEEEEee-CCCC--eEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCc
Q psy7036         124 EDDGKRLLFECRIQA-DPAP--TVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGE  197 (254)
Q Consensus       124 ~~~g~~~~l~C~~~~-~~~~--~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~  197 (254)
                      +.+|+.++|.|.+.+ .|.+  .+.|++++..+..................+.|.+.....++...|+|+|.+..+.
T Consensus        13 l~~G~~~~l~C~v~~~~P~~~~~i~W~~g~~~~~~~~~~~~~~~~~~~~~~s~l~~~~~~~D~g~~ltC~a~~~~~~   89 (109)
T d1vcaa1          13 LEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDE   89 (109)
T ss_dssp             EETTSCEEEEEEEEEEBSGGGEEEEEEETTEEEEEEECCSCCSSCCCEEEEEEEEECCCGGGTTCEEEEEEEECSCC
T ss_pred             ccCCCeEEEEeEeCCcCCCCceEEEEeccCceeeccccccccccCCcceeeEEEEccCChHHCCcEEEEEEEcCcCC
Confidence            568999999999876 5643  5899999887653221111111122233456777654455555999999988643

>d1lp9e1 b.1.1.1 (E:0-117) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.63  E-value=1.7e-07  Score=57.42  Aligned_cols=78  Identities=13%  Similarity=0.194  Sum_probs=50.1

Q ss_pred             CCCeeeecCCCeEEEEEEEeeCCCCeEEEEECC--Ee---cc-------cCCcceEEEcCCCCceeeEEEEccCCCCCce
Q psy7036         118 KPSIRQEDDGKRLLFECRIQADPAPTVIWSHSG--VQ---VK-------EDKRHKFSIDKDGHSYFASLEIIDVTIEDAG  185 (254)
Q Consensus       118 ~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~--~~---~~-------~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G  185 (254)
                      .+..+.+.+|+.++|.|.........+.|||..  +.   +.       .....++....+.......|.|.+++.+|+|
T Consensus         7 ~~~~v~v~~G~~vtL~C~~~~~~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsg   86 (115)
T d1lp9e1           7 TEGLVTLTEGLPVMLNCTYQSTYSPFLFWYVQHLNEAPKLLLKSFTDNKRPEHQGFHATLHKSSSSFHLQKSSAQLSDSA   86 (115)
T ss_dssp             CCSEEEEETTSCEEECEEEECSSSCCEEEEEECTTSCCEEEEESCSSTTCCCCSSCEECCBGGGTBCCEEESSCCGGGCE
T ss_pred             CCCeEEECCCCCEEEEEEEeCCCcCCeeEEEeCCCCceeeeeeeeeccCCcceeeeeeeccCCCCeEEeeccccccccCc
Confidence            345677889999999999877666779999842  11   10       0001111121111111236999999999999


Q ss_pred             eEEEEEEcCC
Q psy7036         186 KYKVTAKNEL  195 (254)
Q Consensus       186 ~y~C~~~~~~  195 (254)
                      .|.|.+....
T Consensus        87 ~YyCa~~~~~   96 (115)
T d1lp9e1          87 LYYCALFLAS   96 (115)
T ss_dssp             EEEEEEEECS
T ss_pred             cceEEEEcCC
Confidence            9999886543

>d1a0ql1 b.1.1.1 (L:2-108) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.62  E-value=1.3e-07  Score=56.94  Aligned_cols=73  Identities=18%  Similarity=0.246  Sum_probs=47.5

Q ss_pred             CCeeeecCCCeEEEEEEEeeCCCCeEEEEECC--E--ec--------ccCCcceEEEcCCCCceeeEEEEccCCCCCcee
Q psy7036         119 PSIRQEDDGKRLLFECRIQADPAPTVIWSHSG--V--QV--------KEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGK  186 (254)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~--~--~~--------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~  186 (254)
                      +..+.+.+|+.++|.|.........+.||+..  .  .+        ......++.....+.  ...|.|.++..+|+|.
T Consensus         7 P~~l~~~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~s~~--~~~L~I~~~~~~DsA~   84 (106)
T d1a0ql1           7 PSSLSASLGGKVTITCKASQDIKKYIGWYQHKPGKQPRLLIHYTSTLLPGIPSRFRGSGSGR--DYSFSISNLEPEDIAT   84 (106)
T ss_dssp             CSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETT--EEEEEECSCCGGGCSE
T ss_pred             CCEEEECCCCCEEEEEEcCCCCCCCeEEEECCCCCcEEEEEEccccccCCCCcceEeecCCC--EeeeEehhhcccCCEe
Confidence            45667889999999998765555569999831  1  11        011111222222221  2479999999999999


Q ss_pred             EEEEEEc
Q psy7036         187 YKVTAKN  193 (254)
Q Consensus       187 y~C~~~~  193 (254)
                      |.|.+.+
T Consensus        85 YyCa~~~   91 (106)
T d1a0ql1          85 YYCLQYY   91 (106)
T ss_dssp             EEEEECS
T ss_pred             EEEEEeC
Confidence            9998754

>d2cdea1 b.1.1.1 (A:2-115) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.62  E-value=1.9e-07  Score=57.17  Aligned_cols=78  Identities=15%  Similarity=0.290  Sum_probs=52.0

Q ss_pred             CCeeeecCCCeEEEEEEEeeCCCCeEEEEECCE-----ec-c--c----CCcceEEEcCCCCceeeEEEEccCCCCCcee
Q psy7036         119 PSIRQEDDGKRLLFECRIQADPAPTVIWSHSGV-----QV-K--E----DKRHKFSIDKDGHSYFASLEIIDVTIEDAGK  186 (254)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~-----~~-~--~----~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~  186 (254)
                      +..+.+.+|+.++|.|.........+.||+...     .+ .  .    ....++....+......+|.|.+++.+|+|.
T Consensus         7 P~~~~~~~G~~vtL~C~~~~~~~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~sL~i~~~~~~Dsg~   86 (114)
T d2cdea1           7 PQSLIILEGKNCTLQCNYTVSPFSNLRWYKQDTGRGPVSLTIMTFSENTKSNGRYTATLDADTKQSSLHITASQLSDSAS   86 (114)
T ss_dssp             CSEEEEETTCCCEEEEEECCSCCSEEEEEEECTTSCCCEEEEECSSCSCEEETTEEECBCSSSSEEEEEECSCCGGGCSE
T ss_pred             CCEEEEeCCCCEEEEEEEcCCCccCceEEEecCCCceEEeeeeeeeecccccCccceeecCcccccccEEcccChhhCcc
Confidence            456778899999999998766666799997321     00 0  0    0111222222223335689999999999999


Q ss_pred             EEEEEEcCCC
Q psy7036         187 YKVTAKNELG  196 (254)
Q Consensus       187 y~C~~~~~~~  196 (254)
                      |.|.+.....
T Consensus        87 Y~Ca~~~~~~   96 (114)
T d2cdea1          87 YICVVSDRGS   96 (114)
T ss_dssp             EEEEEECSCT
T ss_pred             cceeeecCCC
Confidence            9999987543

>d1dqta_ b.1.1.1 (A:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.62  E-value=1.3e-07  Score=58.21  Aligned_cols=73  Identities=18%  Similarity=0.197  Sum_probs=46.6

Q ss_pred             CCceeecCCCeEEEEEEEeeCCC---CceEEEeC--CEE---ee--e--------CCcceEEEeecCCcceEEEEEEecc
Q psy7036          15 PQLRQEDEGNRLIFECQLLCNPK---PDIVWFRG--ETQ---LS--E--------DTRTVMKTTPIGTNKYLVALELDDV   76 (254)
Q Consensus        15 ~~~~~v~~g~~v~l~C~~~~~~~---~~v~W~~~--~~~---~~--~--------~~~~~~~~~~~~~~~~~~~l~i~~~   76 (254)
                      |..+.+.+|++|+|.|.......   ..+.|||.  |+.   +.  .        ..+.......   ......|.|.++
T Consensus         6 P~~~~~~~g~~v~L~C~~~~~~~~~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~L~I~~l   82 (117)
T d1dqta_           6 PSVVLASSHGVASFPCEYSPSHNTDEVRVTVLRQTNDQMTEVCATTFTEKNTVGFLDYPFCSGTF---NESRVNLTIQGL   82 (117)
T ss_dssp             CSEEECCTTSCEEEEEEEESCCTTCEEEEEEEEECSSCEEEEEEEEECSSSBEECTTCTTEEEEE---ETTEEEEEECSC
T ss_pred             CCEEEEcCCCcEEEEEECccCCcccceeEEEEEeCCCCCcEEEEEEeCCcccccCCCCcEEEEeC---CCCEEEEEhhcC
Confidence            66778899999999999854322   24789983  221   10  0        1111111111   122458999999


Q ss_pred             CCCCCeEEEEEEEc
Q psy7036          77 IETDAGLYKVKAKN   90 (254)
Q Consensus        77 ~~~d~G~Y~C~~~~   90 (254)
                      +.+|+|.|.|.+..
T Consensus        83 ~~~Dsa~YyCa~~~   96 (117)
T d1dqta_          83 RAVDTGLYLCKVEL   96 (117)
T ss_dssp             CGGGCEEEEEEEEE
T ss_pred             ccccCEeEEEEEec
Confidence            99999999998763

>d1igtb4 b.1.1.2 (B:363-474) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus), gamma2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Mouse (Mus musculus), gamma2 [TaxId: 10090]

Probab=98.61  E-value=5.5e-08  Score=58.34  Aligned_cols=85  Identities=13%  Similarity=0.127  Sum_probs=54.5

Q ss_pred             CCeeEeCCCceeecCCCeEEEEEEEee-CC-CCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEE
Q psy7036           8 APSFTQKPQLRQEDEGNRLIFECQLLC-NP-KPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYK   85 (254)
Q Consensus         8 ~p~~~~~~~~~~v~~g~~v~l~C~~~~-~~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~   85 (254)
                      +|.+...+.......++.++|.|.+.| .| ...|+|++||...............++.....+.|.|..-.......|+
T Consensus         4 ~P~V~l~~ps~~~~~~~~~tl~C~v~gf~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~W~~~~~yt   83 (102)
T d1igtb4           4 APQVYVLPPPEEEMTKKQVTLTCMVTDFMPEDIYVEWTNNGKTELNYKNTEPVLDSDGSYFMYSKLRVEKKNWVERNSYS   83 (102)
T ss_dssp             CCEEEEECCCGGGTTSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEECTTSCEEEEEEEEEEHHHHHTCCCEE
T ss_pred             CCEEEEECCCHHHhcCCcEEEEEEEEEeECCCcEEEEEECCEEccCcEEccceeCCCCcEEEEEEEEECHHHcCCCCEEE
Confidence            455543332222335788999999988 44 4689999999875433222223334444455667888766655666899


Q ss_pred             EEEEcCC
Q psy7036          86 VKAKNKM   92 (254)
Q Consensus        86 C~~~~~~   92 (254)
                      |.+.+..
T Consensus        84 C~V~H~~   90 (102)
T d1igtb4          84 CSVVHEG   90 (102)
T ss_dssp             EEEECTT
T ss_pred             EEEEeCC
Confidence            9998755

>d1cqka_ b.1.1.2 (A:) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.60  E-value=6.3e-08  Score=57.88  Aligned_cols=85  Identities=11%  Similarity=0.097  Sum_probs=55.1

Q ss_pred             CCeeEeCCCceeecCCCeEEEEEEEee-CC-CCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEE
Q psy7036           8 APSFTQKPQLRQEDEGNRLIFECQLLC-NP-KPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYK   85 (254)
Q Consensus         8 ~p~~~~~~~~~~v~~g~~v~l~C~~~~-~~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~   85 (254)
                      +|.+...+........+.++|.|.+.| .| ...|+|++||..+............++.....+.|.|..-.......|+
T Consensus         3 ~P~V~i~~ps~~~~~~~~~tL~C~v~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~w~~~~~yt   82 (101)
T d1cqka_           3 APQVYTIPPPLEQMAKDLVSLTCMITDFFPEDITVEWQWNGQPAENYKNTQPIMDTDGSYFVYSKLNVQKSNWEAGNTFT   82 (101)
T ss_dssp             CCEEEEECCCGGGTTSSEEEEEEEEEEEBSSCCEEEEEETTEECCSEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEE
T ss_pred             CCEEEEECCCHHHHCCCcEEEEEEEEEeECCCcEEEEEECCEEccCcEEeeeecCCCCcEEEEEEEEECHHHhCCCCEEE
Confidence            455443322222335678999999988 44 5689999999987543332333344455556667888766555667899


Q ss_pred             EEEEcCC
Q psy7036          86 VKAKNKM   92 (254)
Q Consensus        86 C~~~~~~   92 (254)
                      |.|.+..
T Consensus        83 C~V~H~~   89 (101)
T d1cqka_          83 CSVLHEG   89 (101)
T ss_dssp             EEEECTT
T ss_pred             EEEEECC
Confidence            9998764

>d1hxmb1 b.1.1.1 (B:1-123) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=98.60  E-value=2.9e-07  Score=56.97  Aligned_cols=80  Identities=15%  Similarity=0.209  Sum_probs=51.1

Q ss_pred             eeEeCCCceeecCCCeEEEEEEEeeC--CCCceEEEeC--CE---Eee----------eC--CcceEEEeecCCcceEEE
Q psy7036          10 SFTQKPQLRQEDEGNRLIFECQLLCN--PKPDIVWFRG--ET---QLS----------ED--TRTVMKTTPIGTNKYLVA   70 (254)
Q Consensus        10 ~~~~~~~~~~v~~g~~v~l~C~~~~~--~~~~v~W~~~--~~---~~~----------~~--~~~~~~~~~~~~~~~~~~   70 (254)
                      ++.+++.++.+.+|++++|.|.+.|.  ....+.|||.  |+   .+.          ..  ...++...... ......
T Consensus         3 ~l~Qp~~s~t~~~g~t~~LsC~~sg~~~s~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~-~~~~~~   81 (123)
T d1hxmb1           3 HLEQPQISSTKTLSKTARLECVVSGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIP-ETSTST   81 (123)
T ss_dssp             EEECCCSEEEEETTCCEEEEEEEESSCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEET-TTTEEE
T ss_pred             CeECCCCeEEeCCCCCEEEEEEEcCCCcccCeEEEEEECCCCCceEeeecccccccccccccccceeEEeeec-ccccee
Confidence            35566667788899999999999864  3456899972  21   110          00  01122222111 112347


Q ss_pred             EEEeccCCCCCeEEEEEEEc
Q psy7036          71 LELDDVIETDAGLYKVKAKN   90 (254)
Q Consensus        71 l~i~~~~~~d~G~Y~C~~~~   90 (254)
                      |.|.+++.+|+|.|.|....
T Consensus        82 L~i~~l~~~Dsa~YyCA~~~  101 (123)
T d1hxmb1          82 LTIHNVEKQDIATYYCALWE  101 (123)
T ss_dssp             EEECSCCGGGCEEEEEEEEE
T ss_pred             ecccccccccCcEEEEeeeC
Confidence            99999999999999998754

>d1fnga1 b.1.1.2 (A:82-182) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-E group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-E group [TaxId: 10090]

Probab=98.59  E-value=3.4e-07  Score=54.43  Aligned_cols=83  Identities=17%  Similarity=0.226  Sum_probs=52.9

Q ss_pred             CCCCeeEeCCCceeecCCCeEEEEEEEeeC-C-CCceEEEeCCEEeeeCCc-ceEEEeecCCcceEEEEEEeccCCCCCe
Q psy7036           6 DFAPSFTQKPQLRQEDEGNRLIFECQLLCN-P-KPDIVWFRGETQLSEDTR-TVMKTTPIGTNKYLVALELDDVIETDAG   82 (254)
Q Consensus         6 ~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~-~-~~~v~W~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~i~~~~~~d~G   82 (254)
                      ..+|.+.+.+.. .+..|+.++|.|.+.|. | ...|+|++||..+..+.. .......++.....+.|.+..   .+..
T Consensus         3 ~v~P~V~v~~~~-~~~~~~~~tL~C~v~gF~P~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~S~L~v~~---~~~~   78 (101)
T d1fnga1           3 NVAPEVTVLSRS-PVNLGEPNILICFIDKFSPPVVNVTWLRNGRPVTEGVSETVFLPRDDHLFRKFHYLTFLP---STDD   78 (101)
T ss_dssp             CBCCEEEEEESS-CCCTTSCEEEEEEEEEEBSSCCEEEEEETTEEECSSEEECCCEECSSSCEEEEEEEEECC---CTTC
T ss_pred             CcCCeEEEeCCC-cccCCCCEEEEEEEEeEECCCCEEEEEECCeecCCCcEeCeEEECCCCcEEEEEEeEEcC---CCCC
Confidence            357777765433 24568889999999884 5 558999999998764321 112222233333444555543   4456


Q ss_pred             EEEEEEEcCC
Q psy7036          83 LYKVKAKNKM   92 (254)
Q Consensus        83 ~Y~C~~~~~~   92 (254)
                      .|+|.+.+..
T Consensus        79 ~ytC~V~H~s   88 (101)
T d1fnga1          79 FYDCEVDHWG   88 (101)
T ss_dssp             CEEEEEECTT
T ss_pred             EEEEEEEECC
Confidence            8999998764

>d2nxyb1 b.1.1.1 (B:1001-1097) CD4 V-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD4 V-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.59  E-value=3.5e-08  Score=58.74  Aligned_cols=72  Identities=14%  Similarity=0.198  Sum_probs=45.9

Q ss_pred             eeecCCCeEEEEEEEeeCCCCeEEEEECCEec--cc----------CCcceEEEcCCC-CceeeEEEEccCCCCCceeEE
Q psy7036         122 RQEDDGKRLLFECRIQADPAPTVIWSHSGVQV--KE----------DKRHKFSIDKDG-HSYFASLEIIDVTIEDAGKYK  188 (254)
Q Consensus       122 ~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~--~~----------~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~G~y~  188 (254)
                      +...+|++++|.|.........+.|++.....  ..          ....++....+. .....+|.|.+++.+|+|.|.
T Consensus         4 V~~~~G~svtL~C~~s~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~l~~~DsG~Y~   83 (97)
T d2nxyb1           4 VLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTYI   83 (97)
T ss_dssp             EEEETTSCEEECCBCSSSSCCCEEEEETTCCEEEEEETTEEEECSSTTGGGEECCGGGGGGTBCCEEECSCCGGGCEEEE
T ss_pred             EEEEcCCcEEEEEEEecCCCceEEEEEeCCceeeeecceeeeecCceeccceEEEeccCCCCEEEEEECCCChHHCEEEE
Confidence            45668999999999766666679999854321  00          001111111000 111237999999999999999


Q ss_pred             EEEEc
Q psy7036         189 VTAKN  193 (254)
Q Consensus       189 C~~~~  193 (254)
                      |.+.+
T Consensus        84 C~v~~   88 (97)
T d2nxyb1          84 CEVED   88 (97)
T ss_dssp             EEETT
T ss_pred             EEEec
Confidence            99965

>d1i1ca2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.59  E-value=6e-08  Score=58.14  Aligned_cols=86  Identities=9%  Similarity=0.066  Sum_probs=55.4

Q ss_pred             CCeeEeCCCceeecCCCeEEEEEEEeeC-C-CCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEE
Q psy7036           8 APSFTQKPQLRQEDEGNRLIFECQLLCN-P-KPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYK   85 (254)
Q Consensus         8 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~-~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~   85 (254)
                      .|.+...+.......++.++|.|.+.|. | ...|+|+++|..+............++.....+.|.|..........|+
T Consensus         4 ~P~V~i~~p~~~~~~~~~~~L~C~v~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgt~s~~S~L~v~~~~w~~~~~yt   83 (102)
T d1i1ca2           4 GPQVYTMAPPKEEMTQSQVSITCMVKGFYPPDIYTEWKMNGQPQENYKNTPPTMDTDGSYFLYSKLNVKKETWQQGNTFT   83 (102)
T ss_dssp             CCEEEEECCCGGGGGSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEE
T ss_pred             CCEEEEECCCHHHhcCCeEEEEEEEEEEECCCCEEEEEECCeeccCcEEcccEeCCCCCEEEEEEEEECHHHhCCCCEEE
Confidence            4555443322223345789999999883 4 4689999999876543333333344444455667888776666667899


Q ss_pred             EEEEcCCC
Q psy7036          86 VKAKNKMG   93 (254)
Q Consensus        86 C~~~~~~~   93 (254)
                      |.|.+...
T Consensus        84 C~V~H~~~   91 (102)
T d1i1ca2          84 CSVLHEGL   91 (102)
T ss_dssp             EEEECTTS
T ss_pred             EEEEeCCC
Confidence            99987543

>d1hdmb1 b.1.1.2 (B:88-185) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=98.58  E-value=4.1e-07  Score=53.68  Aligned_cols=82  Identities=13%  Similarity=0.181  Sum_probs=52.8

Q ss_pred             CCeeEeCCCceeecCCCeEEEEEEEeeC-C-CCceEEEeCCEEeeeCCc-ceEEEeecCCcceEEEEEEeccCCCCCeEE
Q psy7036           8 APSFTQKPQLRQEDEGNRLIFECQLLCN-P-KPDIVWFRGETQLSEDTR-TVMKTTPIGTNKYLVALELDDVIETDAGLY   84 (254)
Q Consensus         8 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~-~-~~~v~W~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y   84 (254)
                      +|.+.+.+.. .+..++.++|.|.+.|. | ...|+|++||+.+..+.. .......++.....+.|.+   ..++...|
T Consensus         3 PP~V~v~~~~-~~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~s~L~v---~~~~~~~y   78 (98)
T d1hdmb1           3 PPSVQVAKTT-PFNTREPVMLACYVWGFYPAEVTITWRKNGKLVMHSSAHKTAQPNGDWTYQTLSHLAL---TPSYGDTY   78 (98)
T ss_dssp             CCEEEEEECC-CCSSSCSEEEEEEEEEEBSSCCEEEEEETTEECCCCCSBCCCEECSSSCEEEEEEEEE---CCCTTCCE
T ss_pred             CCEEEEEcCC-CccCCCcEEEEEEEEEEECCCCEEEEEECCEeccCCeEeCceEECCCCCEEEEEEeEc---CCCCCCEE
Confidence            5776654332 25567899999999884 4 678999999998864432 2233333333333445555   35556689


Q ss_pred             EEEEEcCCC
Q psy7036          85 KVKAKNKMG   93 (254)
Q Consensus        85 ~C~~~~~~~   93 (254)
                      +|.+.+...
T Consensus        79 tC~V~H~sl   87 (98)
T d1hdmb1          79 TCVVEHIGA   87 (98)
T ss_dssp             EEEEECTTS
T ss_pred             EEEEEeCCC
Confidence            999997654

>d1rzfl2 b.1.1.2 (L:109-210) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.58  E-value=4.8e-08  Score=58.59  Aligned_cols=87  Identities=16%  Similarity=0.171  Sum_probs=55.2

Q ss_pred             CCCCeeEeCCCceeecCCCeEEEEEEEee-CC-CCceEEEeCCEEeeeCCc-ceEEEeecCCcceEEEEEEeccCCCCCe
Q psy7036           6 DFAPSFTQKPQLRQEDEGNRLIFECQLLC-NP-KPDIVWFRGETQLSEDTR-TVMKTTPIGTNKYLVALELDDVIETDAG   82 (254)
Q Consensus         6 ~~~p~~~~~~~~~~v~~g~~v~l~C~~~~-~~-~~~v~W~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~i~~~~~~d~G   82 (254)
                      ..+|.+.+.+.......++.++|.|.+.+ .| ...|+|++||..+..... .......++.....+.|.|.........
T Consensus         3 ~~~P~V~~~~ps~~~~~~~~~tL~C~v~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~w~~~~   82 (102)
T d1rzfl2           3 KAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHR   82 (102)
T ss_dssp             CBCCEEEEECCCHHHHHTTCEEEEEEEEEEBSSCCEEEEEETTEECCSSEEECCCEECTTSCEEEEEEEEECHHHHHHSS
T ss_pred             CCCCEEEEECCCHHHhcCCcEEEEEEEEeeCCCCeEEEEEECCEECCCCEEeCCcEECCCCEEEEEEEEEECHHHhCCCC
Confidence            34677665443322334677999999988 34 457999999998765422 1222233344455567777655544566


Q ss_pred             EEEEEEEcCC
Q psy7036          83 LYKVKAKNKM   92 (254)
Q Consensus        83 ~Y~C~~~~~~   92 (254)
                      .|+|.+.+..
T Consensus        83 ~ytC~V~H~~   92 (102)
T d1rzfl2          83 SYSCQVTHEG   92 (102)
T ss_dssp             CEEEEEEETT
T ss_pred             EEEEEEEECC
Confidence            8999999864

>d1hkfa_ b.1.1.1 (A:) NK cell activating receptor NKP44 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: NK cell activating receptor NKP44
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.58  E-value=4.7e-07  Score=54.82  Aligned_cols=77  Identities=18%  Similarity=0.274  Sum_probs=47.0

Q ss_pred             CeeeecCCCeEEEEEEEeeCC--CCeEEEEECCE--e---c-------ccCCcceEEEcCCCCceeeEEEEccCCCCCce
Q psy7036         120 SIRQEDDGKRLLFECRIQADP--APTVIWSHSGV--Q---V-------KEDKRHKFSIDKDGHSYFASLEIIDVTIEDAG  185 (254)
Q Consensus       120 ~~~~~~~g~~~~l~C~~~~~~--~~~~~W~~~~~--~---~-------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G  185 (254)
                      ..+...+|+.++|.|......  ...+.|+|...  .   +       ......++....+.......|.|.+++.+|+|
T Consensus         4 ~~v~~~~G~svtl~C~~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~l~~~DsG   83 (108)
T d1hkfa_           4 QVLQSVAGQTLTVRCQYPPTGSLYEKKGWCKEASALVCIRLVTSSKPRTMAWTSRFTIWDDPDAGFFTVTMTDLREEDSG   83 (108)
T ss_dssp             EEEEECTTCCEEEEEECCCCTTCCCEEEEEEEEETTEEEEEEEECSTTCCBCSTTEEEEEETTTTEEEEEECSCCGGGCE
T ss_pred             EEEEEcCCCCEEEEEEECCCCCCCCEEEEEEeCCCCCcEEeeeccCccccceeeeEeeeeeCCCCEEEEEEhhhCCCCCE
Confidence            346778999999999865332  33578987321  1   1       00111112121111122358999999999999


Q ss_pred             eEEEEEEcCCC
Q psy7036         186 KYKVTAKNELG  196 (254)
Q Consensus       186 ~y~C~~~~~~~  196 (254)
                      .|.|.+.....
T Consensus        84 ~Y~C~v~~~~~   94 (108)
T d1hkfa_          84 HYWCRIYRPSD   94 (108)
T ss_dssp             EEEEEEECTTT
T ss_pred             EEEEEEecCCC
Confidence            99999886543

>d1de4a1 b.1.1.2 (A:182-275) Hemochromatosis protein Hfe, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Hemochromatosis protein Hfe, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.58  E-value=6.8e-07  Score=52.31  Aligned_cols=68  Identities=13%  Similarity=0.329  Sum_probs=43.7

Q ss_pred             CCCeEEEEEEEee-CC-CCceEEEeCCEEeeeCCcceEEEeecCCcce--EEEEEEeccCCCCCeEEEEEEEcCC
Q psy7036          22 EGNRLIFECQLLC-NP-KPDIVWFRGETQLSEDTRTVMKTTPIGTNKY--LVALELDDVIETDAGLYKVKAKNKM   92 (254)
Q Consensus        22 ~g~~v~l~C~~~~-~~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~i~~~~~~d~G~Y~C~~~~~~   92 (254)
                      .++.++|.|.+.| .| ...++|++||+.+............++...+  .+.|.+   ...+...|+|.+.+..
T Consensus        14 ~~~~~tL~C~~~gFyP~~i~v~W~~dg~~~~~~~~~~~~~~~~~~~t~~~~s~l~v---~~~~~~~ytC~V~H~s   85 (94)
T d1de4a1          14 TSSVTTLRCRALNYYPQNITMKWLKDKQPMDAKEFEPKDVLPNGDGTYQGWITLAV---PPGEEQRYTCQVEHPG   85 (94)
T ss_dssp             CSSCEEEEEEEEEEBSSCCEEEEEETTEECCGGGSCCCEEEECTTSCEEEEEEEEE---CTTCGGGEEEEEECTT
T ss_pred             CCCCEEEEEEEeeEECCCCEEEEEECCEECccCcccccceEeCCCceEEEEEEEEE---CCCCCCEEEEEEEeCC
Confidence            5678999999998 45 4589999999998643222122222333333  333433   4456678999999764

>d1l6xa2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.57  E-value=8.1e-08  Score=57.59  Aligned_cols=85  Identities=13%  Similarity=0.139  Sum_probs=55.5

Q ss_pred             CCeeEe-CCCceeecCCCeEEEEEEEee-CC-CCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEE
Q psy7036           8 APSFTQ-KPQLRQEDEGNRLIFECQLLC-NP-KPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLY   84 (254)
Q Consensus         8 ~p~~~~-~~~~~~v~~g~~v~l~C~~~~-~~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y   84 (254)
                      .|.+.. .|... ...++.++|.|.+.| .| ...|+|++||...............++.....+.|.|..-.......|
T Consensus         4 ~P~V~i~~ps~~-~~~~~~~tL~Clv~gf~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~w~~g~~y   82 (102)
T d1l6xa2           4 EPQVYTLPPSRD-ELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVF   82 (102)
T ss_dssp             CCEEEEECCCGG-GGGSSEEEEEEEEEEEBSSCCEEEEEETTEEECCEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCE
T ss_pred             CCEEEEECcCHH-HhcCCceEEEEEEEEeECCCCEEEEEECCEECCCeEEcceEECCCCCEEEEEEEEECHHHcCCCCEE
Confidence            455443 33322 225778999999988 44 468999999987654333333334445555666788877665556689


Q ss_pred             EEEEEcCCC
Q psy7036          85 KVKAKNKMG   93 (254)
Q Consensus        85 ~C~~~~~~~   93 (254)
                      +|.|.+...
T Consensus        83 tC~V~H~~l   91 (102)
T d1l6xa2          83 SCSVMHEAL   91 (102)
T ss_dssp             EEEEECTTS
T ss_pred             EEEEEeCCC
Confidence            999997653

>d1ugna1 b.1.1.4 (A:2-97) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.57  E-value=1.8e-08  Score=59.62  Aligned_cols=75  Identities=13%  Similarity=0.149  Sum_probs=51.6

Q ss_pred             CCeeEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEE
Q psy7036           8 APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVK   87 (254)
Q Consensus         8 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~   87 (254)
                      +|.+...|.. .|..|++|+|.|... .+...+.++|+|.......+... ...+     .+.+.|.+++..|+|.|+|.
T Consensus         4 kP~Lsa~Ps~-~V~~G~~VTL~C~~~-~~~~~f~L~keg~~~~~~~~~~~-~~~~-----~a~F~i~~v~~~~~G~Y~C~   75 (96)
T d1ugna1           4 KPTLWAEPGS-VITQGSPVTLRCQGG-QETQEYRLYREKKTAPWITRIPQ-ELVK-----KGQFPIPSITWEHTGRYRCY   75 (96)
T ss_dssp             CCEEEEESCS-EEETTCCEEEEEECC-TTCCCEEEEESSSCCHHHHTSCH-HHHT-----TTEEEESSCCGGGCEEEEEE
T ss_pred             CCEEEeECCC-ccCCCCcEEEEEeCC-CCCCEEEEEECCCCcccEEEccC-CCCC-----EEEEEEEecCHHHCCeEEEE
Confidence            6788888875 578999999999974 45567889998863221000000 0001     11799999999999999998


Q ss_pred             EEc
Q psy7036          88 AKN   90 (254)
Q Consensus        88 ~~~   90 (254)
                      ...
T Consensus        76 y~~   78 (96)
T d1ugna1          76 YGS   78 (96)
T ss_dssp             EEE
T ss_pred             EeC
Confidence            653

>d1ucta1 b.1.1.4 (A:2-100) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.57  E-value=5.9e-08  Score=57.90  Aligned_cols=80  Identities=13%  Similarity=-0.029  Sum_probs=50.2

Q ss_pred             CCccccCCCeeeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEE
Q psy7036         112 APTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTA  191 (254)
Q Consensus       112 ~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~  191 (254)
                      .|.+...+.. .+..|++|+|.|... .+...+.|+|++.........   .........+.+.|.+++.+|+|.|+|..
T Consensus         7 kPsLsa~P~~-~V~~G~~VTL~C~~~-~~~~~f~l~k~g~~~~~~~~~---~~~~~~~~~a~F~l~~vt~~~~G~Y~C~y   81 (99)
T d1ucta1           7 MPFISAKSSP-VIPLDGSVKIQCQAI-REAYLTQLMIIKNSTYREIGR---RLKFWNETDPEFVIDHMDANKAGRYQCQY   81 (99)
T ss_dssp             CCCEEESSCS-EEETTCCEEEEECCC-TTCSEEEEEEEETTEEEECSE---ECC----CCCEEEECSCCGGGCEEEEEEE
T ss_pred             CCEEEecCCC-ceeCCCeEEEEEcCC-CCCcEEEEEECCCcCceeccc---cccCCCCceEEEEecCCCHHHCceEEEEE
Confidence            3444444443 477899999999863 445679999876422111110   00011111237999999999999999999


Q ss_pred             EcCCC
Q psy7036         192 KNELG  196 (254)
Q Consensus       192 ~~~~~  196 (254)
                      .++..
T Consensus        82 ~~~~~   86 (99)
T d1ucta1          82 RIGHY   86 (99)
T ss_dssp             EETTT
T ss_pred             ECCCc
Confidence            88654

>d1hdma1 b.1.1.2 (A:94-196) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=98.57  E-value=9.9e-07  Score=52.48  Aligned_cols=83  Identities=8%  Similarity=0.052  Sum_probs=53.8

Q ss_pred             CCeeEeCCCceeecCCCeEEEEEEEee-CC-CCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEE
Q psy7036           8 APSFTQKPQLRQEDEGNRLIFECQLLC-NP-KPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYK   85 (254)
Q Consensus         8 ~p~~~~~~~~~~v~~g~~v~l~C~~~~-~~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~   85 (254)
                      .|.+.+.+.. .+..|+..+|.|.+.| .| ...|+|.+||..+............++.....+.|.|.   .++...|+
T Consensus         4 ~P~v~v~~~~-p~e~~~~~tL~C~v~gF~P~~i~V~W~~ng~~~~~~~~~~~~~~~dgty~~~S~L~v~---~~~~~~yt   79 (103)
T d1hdma1           4 FPIAEVFTLK-PLEFGKPNTLVCFVSNLFPPMLTVNWHDHSVPVEGFGPTFVSAVDGLSFQAFSYLNFT---PEPSDIFS   79 (103)
T ss_dssp             CCEEEEEESS-CCCTTSCEEEEEEEEEEBSSCEEEEEEETTEECSSCCCEEEEEETTTEEEEEEEEEEC---CCTTCCEE
T ss_pred             CCeEEEECCC-chhcCCCeEEEEEEeeEECCCCEEEEEECCeecCCcEeceEEeCCCCcEEEEEEEEEe---cCCCCEEE
Confidence            5665543322 2457889999999988 44 46799999999875444433433444444444456554   44556799


Q ss_pred             EEEEcCCCc
Q psy7036          86 VKAKNKMGE   94 (254)
Q Consensus        86 C~~~~~~~~   94 (254)
                      |.+.+....
T Consensus        80 C~V~H~~l~   88 (103)
T d1hdma1          80 CIVTHEPDR   88 (103)
T ss_dssp             EEEEETTTT
T ss_pred             EEEEeCCCC
Confidence            999987543

>d1neua_ b.1.1.1 (A:) Myelin membrane adhesion molecule P0 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin membrane adhesion molecule P0
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.57  E-value=1.9e-07  Score=57.75  Aligned_cols=88  Identities=13%  Similarity=0.155  Sum_probs=50.8

Q ss_pred             CCeeeecCCCeEEEEEEEeeC----CCCeEEEEECC--E----ecc------------cCCcceEEEcCCCCceeeEEEE
Q psy7036         119 PSIRQEDDGKRLLFECRIQAD----PAPTVIWSHSG--V----QVK------------EDKRHKFSIDKDGHSYFASLEI  176 (254)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~----~~~~~~W~~~~--~----~~~------------~~~~~~~~~~~~~~~~~~~l~i  176 (254)
                      +..+.+..|++++|.|.....    ....+.|++..  .    .+.            .....++....+.....++|.|
T Consensus         6 p~~v~a~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I   85 (119)
T d1neua_           6 DREVYGAVGSQVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYIDEVGTFKERIQWVGDPSWKDGSIVI   85 (119)
T ss_dssp             CSEEEEETTSCEEECCEEECSSCCCSCCEEEEEEEETTCCCCEEEEEEETTEEEECSSSTTTTCEEECCBGGGTBCCEEE
T ss_pred             CCeEEEeeCCCEEEEEEEEecCCCCccEEEEEEEecccCCceeEEEEEeecccccccCccceeEEEEEEECCCCEEEEEE
Confidence            455677889999999996532    23468998731  1    010            0001122222111112247999


Q ss_pred             ccCCCCCceeEEEEEEcCCCcc--eEEEEEEE
Q psy7036         177 IDVTIEDAGKYKVTAKNELGES--NATISLNF  206 (254)
Q Consensus       177 ~~~~~~d~G~y~C~~~~~~~~~--~~~~~~~v  206 (254)
                      .+++.+|+|.|.|.+.+..+..  ...++|.|
T Consensus        86 ~~v~~~DsG~Y~C~v~~~~~~~~~~~~v~L~V  117 (119)
T d1neua_          86 HNLDYSDNGTFTCDVKNPPDIVGKTSQVTLYV  117 (119)
T ss_dssp             CSCCGGGCEEEEEEEEC----CCEEEEEEEEE
T ss_pred             CCCChHHCEEEEEEEEECCCcCceEEEEEEEE
Confidence            9999999999999999865433  33455544

>d2bnqd1 b.1.1.1 (D:2-114) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.56  E-value=3e-07  Score=56.19  Aligned_cols=78  Identities=18%  Similarity=0.302  Sum_probs=51.0

Q ss_pred             cCCCeeeecCCCeEEEEEEEeeCCCCeEEEEECC--Ee--c----------ccCCcceEEEcCCCCceeeEEEEccCCCC
Q psy7036         117 KKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSG--VQ--V----------KEDKRHKFSIDKDGHSYFASLEIIDVTIE  182 (254)
Q Consensus       117 ~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~--~~--~----------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~  182 (254)
                      ..+..+.+.+|+.++|.|...+.....+.|||..  +.  .          ....+.........  ....|.|.+++.+
T Consensus         5 Q~P~~v~v~~G~sv~L~C~~s~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~L~i~~~~~~   82 (113)
T d2bnqd1           5 QIPAALSVPEGENLVLNCSFTDSAIYNLQWFRQDPGKGLTSLLLIQSSQREQTSGRLNASLDKSS--GRSTLYIAASQPG   82 (113)
T ss_dssp             CSSSEEEEETTCCEEEEEEESCCCEEEEEEEEECTTSCEEEEEEEETTCCEEEETTEEEEEETTT--TEEEEEESSCCGG
T ss_pred             eeCCEEEEcCCCCEEEEEEEecCcccCCeEEEeccccccceeeeeccceecccccceeeeeccCC--CEEEeeeecCCCC
Confidence            3455677889999999999876655568999832  11  0          00111122222222  2358999999999


Q ss_pred             CceeEEEEEEcCCC
Q psy7036         183 DAGKYKVTAKNELG  196 (254)
Q Consensus       183 d~G~y~C~~~~~~~  196 (254)
                      |+|.|.|.+....+
T Consensus        83 Dsg~YyCa~~~~~~   96 (113)
T d2bnqd1          83 DSATYLCAVRPTSG   96 (113)
T ss_dssp             GCEEEEEEEEESSS
T ss_pred             CCcEEeEeEecCCC
Confidence            99999999876543

>d1nezg_ b.1.1.1 (G:) CD8 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.56  E-value=1.9e-07  Score=57.85  Aligned_cols=76  Identities=13%  Similarity=0.199  Sum_probs=49.0

Q ss_pred             ccCCCeeeecCCCeEEEEEEEeeCCCCeEEEEEC--CEec-------cc-CC------------cceEEEc-CCCCceee
Q psy7036         116 LKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHS--GVQV-------KE-DK------------RHKFSID-KDGHSYFA  172 (254)
Q Consensus       116 ~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~--~~~~-------~~-~~------------~~~~~~~-~~~~~~~~  172 (254)
                      ...+..+.+.+|++++|.|...+.....+.|++.  +..+       .. ..            ..++... .++.  ..
T Consensus         5 ~~~P~~~~~~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~--~~   82 (122)
T d1nezg_           5 RIFPKKMDAELGQKVDLVCEVLGSVSQGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLFSAMRDTNN--KY   82 (122)
T ss_dssp             EEESSCEEECTTCCEEEEEEEESCCSSCEEEEEEESSCSSCCCEEEEEECSSSCCEEECTTTTGGGTEEEEEETTT--EE
T ss_pred             EEcCCEEEECCCCCEEEEEEEcCccCCCEEEEEECCCCCcCceEEEEeeeccccceeeccCCCCCcEEEEECCCCC--Ee
Confidence            3345567788999999999987776778999972  2111       00 00            0111111 1111  23


Q ss_pred             EEEEccCCCCCceeEEEEEEc
Q psy7036         173 SLEIIDVTIEDAGKYKVTAKN  193 (254)
Q Consensus       173 ~l~i~~~~~~d~G~y~C~~~~  193 (254)
                      .|+|.+++.+|+|.|.|.+..
T Consensus        83 ~L~I~~~~~~Dsg~YyCa~~~  103 (122)
T d1nezg_          83 VLTLNKFSKENEGYYFCSVIS  103 (122)
T ss_dssp             EEEESSCCGGGCEEEEEEEEE
T ss_pred             EEEEcccccCCCEEEEeeEeC
Confidence            799999999999999998763

>d1tvda_ b.1.1.1 (A:) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=98.56  E-value=2.9e-07  Score=56.51  Aligned_cols=79  Identities=16%  Similarity=0.209  Sum_probs=49.0

Q ss_pred             CCCeeeecCCCeEEEEEEEeeC-CCCeEEEEEC--CEe---cc----------cCCcceEEEcCCCCceeeEEEEccCCC
Q psy7036         118 KPSIRQEDDGKRLLFECRIQAD-PAPTVIWSHS--GVQ---VK----------EDKRHKFSIDKDGHSYFASLEIIDVTI  181 (254)
Q Consensus       118 ~~~~~~~~~g~~~~l~C~~~~~-~~~~~~W~~~--~~~---~~----------~~~~~~~~~~~~~~~~~~~l~i~~~~~  181 (254)
                      .+..+.+.+|+.++|.|..... ....+.||+.  +..   +.          .....++....+.......|.|.+++.
T Consensus         6 ~p~~~~~~~G~~vtL~C~~~~~~~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~   85 (116)
T d1tvda_           6 SSPDQTVASGSEVVLLCTYDTVYSNPDLFWYRIRPDYSFQFVFYGDDSRSEGADFTQGRFSVKHILTQKAFHLVISPVRT   85 (116)
T ss_dssp             CSCCEEEETTCCEEECCEEECCSSSCCEEEEEECTTSCEEEEEEECSSCEEECGGGTTTEEEEEEGGGTEEEEEESSCCG
T ss_pred             cCCCEEEcCCCCEEEEEEEcCCccCCcEEEEEeCCCCceEEeeecccccccccCccceEEEEEecCceeEEeeeecCccc
Confidence            3455678899999999997643 3457899972  111   10          001112222111112234799999999


Q ss_pred             CCceeEEEEEEcCCC
Q psy7036         182 EDAGKYKVTAKNELG  196 (254)
Q Consensus       182 ~d~G~y~C~~~~~~~  196 (254)
                      +|+|.|.|.+....+
T Consensus        86 ~Dsg~YyCa~~~~~~  100 (116)
T d1tvda_          86 EDSATYYCAFTLPPP  100 (116)
T ss_dssp             GGCEEEEEEEECTTT
T ss_pred             cccccceeeEecCCC
Confidence            999999998876443

>d1dr9a2 b.1.1.3 (A:106-200) CD80, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD80, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.56  E-value=1.1e-06  Score=51.65  Aligned_cols=76  Identities=12%  Similarity=0.109  Sum_probs=50.9

Q ss_pred             cCCCeEEEEEEEee-CCCCeEEEEECCEecccCCcceEEEcCCC-CceeeEEEEccCCCCCceeEEEEEEcCCCcceEEE
Q psy7036         125 DDGKRLLFECRIQA-DPAPTVIWSHSGVQVKEDKRHKFSIDKDG-HSYFASLEIIDVTIEDAGKYKVTAKNELGESNATI  202 (254)
Q Consensus       125 ~~g~~~~l~C~~~~-~~~~~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~  202 (254)
                      ..++.++|.|.+.| +|.+.+.|++++..+............++ +...+.|.+..   .+...|+|.+.+........+
T Consensus        14 ~s~~~~~L~C~~~g~~P~~~V~W~~n~~~~~~~~~~~~~~~~~g~y~v~S~L~v~~---~~~~~~tC~V~h~~l~~~~~~   90 (95)
T d1dr9a2          14 PTSNIRRIICSTSGGFPEPHLSWLENGEELNAINTTVSQDPETELYAVSSKLDFNM---TTNHSFMCLIKYGHLRVNQTF   90 (95)
T ss_dssp             SSTTEEEEEEEEEEESSCEEEEEEESSCEECCSEEEEEECTTTCCEEEEEEEEEET---TSCEEEEEEEEETTCCEEEEE
T ss_pred             CCCCEEEEEEEECcccCCCEEEEecCCcEecccceeeEecCCCccEEEEEEEEccC---CccceEEEEEEecCCCCcEEE
Confidence            35778899999987 68889999999988865433222222222 23345666653   345689999998876655554


Q ss_pred             E
Q psy7036         203 S  203 (254)
Q Consensus       203 ~  203 (254)
                      .
T Consensus        91 ~   91 (95)
T d1dr9a2          91 N   91 (95)
T ss_dssp             E
T ss_pred             E
Confidence            4

>d1o0va1 b.1.1.2 (A:228-330) Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.55  E-value=1.8e-07  Score=56.18  Aligned_cols=72  Identities=14%  Similarity=0.121  Sum_probs=50.1

Q ss_pred             cCCCeEEEEEEEee-CCC-CceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcCC
Q psy7036          21 DEGNRLIFECQLLC-NPK-PDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKM   92 (254)
Q Consensus        21 ~~g~~v~l~C~~~~-~~~-~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~   92 (254)
                      ..+.+++|.|.+.+ .|. ..|+|+++|..+............++.....+.|.|..-.......|+|.|.+..
T Consensus        19 ~~~~tv~L~Cl~~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~~~y~~~S~L~v~~~~w~~~~~ytC~V~H~~   92 (104)
T d1o0va1          19 HFPPTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLSTASTTQEGELASTQSELTLSQKHWLSDRTYTCQVTYQG   92 (104)
T ss_dssp             CCCSEEEEEEEEEEECCCCEEEEEEETTEECCGGGEEEEEEEETTEEEEEEEEEEEHHHHHTTCCEEEEEEETT
T ss_pred             CCCCeEEEEEEEEEEECCCcEEEEEECCEEccCCceeeeEeCCCCeEEEEEEEEECHHHcCCCCEEEEEEEECC
Confidence            34567999999988 454 4799999999887554433333334444455678887665556678999999865

>d1i8ka_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.55  E-value=1.9e-07  Score=56.21  Aligned_cols=73  Identities=19%  Similarity=0.312  Sum_probs=47.7

Q ss_pred             CCeeeecCCCeEEEEEEEeeCCCCeEEEEEC--CEec----------ccCCcceEEEcCCCCceeeEEEEccCCCCCcee
Q psy7036         119 PSIRQEDDGKRLLFECRIQADPAPTVIWSHS--GVQV----------KEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGK  186 (254)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~--~~~~----------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~  186 (254)
                      |..+.+.+|+.++|.|.........+.||+.  ++..          ......++.....+.  ...|.|.+++.+|+|.
T Consensus         8 P~slsv~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~rfs~~~~~~--~~~L~I~~~~~~Dsa~   85 (106)
T d1i8ka_           8 PASLSVATGEKVTIRCMTSTDIDDDMNWYQQKPGEPPKFLISEGNTLRPGVPSRFSSSGTGT--DFVFTIENTLSEDVGD   85 (106)
T ss_dssp             CSEEECCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETT--EEEEEESSCCGGGCEE
T ss_pred             CCEEEECCCCCEEEEEEeCCCCCccEEEEeCCCCCceEEEEeccCccccCCCcceeEeCCCC--eeeecccCCccccCEE
Confidence            4566788999999999876555556999973  2111          011112222222222  2479999999999999


Q ss_pred             EEEEEEc
Q psy7036         187 YKVTAKN  193 (254)
Q Consensus       187 y~C~~~~  193 (254)
                      |.|.+.+
T Consensus        86 YyCa~~~   92 (106)
T d1i8ka_          86 YYCLQSF   92 (106)
T ss_dssp             EEEEECS
T ss_pred             EeEecCc
Confidence            9998654

>d3bp5a1 b.1.1.1 (A:1-114) Programmed cell death protein 1, PD1, extracellular domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Programmed cell death protein 1, PD1, extracellular domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.55  E-value=7.4e-07  Score=54.41  Aligned_cols=77  Identities=18%  Similarity=0.240  Sum_probs=48.7

Q ss_pred             CCCeeeecCCCeEEEEEEEeeC-CCCeEEEEEC--CEe---c--------ccCCcceEEEcCCCCceeeEEEEccCCCCC
Q psy7036         118 KPSIRQEDDGKRLLFECRIQAD-PAPTVIWSHS--GVQ---V--------KEDKRHKFSIDKDGHSYFASLEIIDVTIED  183 (254)
Q Consensus       118 ~~~~~~~~~g~~~~l~C~~~~~-~~~~~~W~~~--~~~---~--------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d  183 (254)
                      .+..+.+.+|+.++|.|..... ....+.||+.  +..   +        ......++....+.......|.|.+++.+|
T Consensus         5 sP~~l~v~~G~~vtl~C~~~~~~~~~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~~D   84 (114)
T d3bp5a1           5 YPAWLTVSEGANATFTCSLSNWSEDLMLNWNRLSPSNQTEKQAAFSNGLSQPVQDARFQIIQLPNRHDFHMNILDTRRND   84 (114)
T ss_dssp             ESSEEEEETTCCEEEEEEESCCCTTCEEEEEEECTTCCEEEEEEEETTEEEESSCTTEEEEECTTSSEEEEEESSCCGGG
T ss_pred             CCCeEEECCCCCEEEEEEECCCCCcceEEEEEECCCCCCeeeEEeeeccccccccCcceEEEeCCCCEEEEEECccCcCC
Confidence            3456778899999999997543 3446899973  111   1        001111222222222223479999999999


Q ss_pred             ceeEEEEEEcC
Q psy7036         184 AGKYKVTAKNE  194 (254)
Q Consensus       184 ~G~y~C~~~~~  194 (254)
                      +|.|.|.+...
T Consensus        85 sg~YyCa~~~~   95 (114)
T d3bp5a1          85 SGIYLCGAISL   95 (114)
T ss_dssp             CEEEEEEEECS
T ss_pred             CeEEEEEEEeC
Confidence            99999998754

>d1uvqa1 b.1.1.2 (A:85-183) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=98.55  E-value=5.4e-07  Score=53.32  Aligned_cols=83  Identities=14%  Similarity=0.160  Sum_probs=52.5

Q ss_pred             CCCCeeEeCCCceeecCCCeEEEEEEEeeC-C-CCceEEEeCCEEeeeCC-cceEEEeecCCcceEEEEEEeccCCCCCe
Q psy7036           6 DFAPSFTQKPQLRQEDEGNRLIFECQLLCN-P-KPDIVWFRGETQLSEDT-RTVMKTTPIGTNKYLVALELDDVIETDAG   82 (254)
Q Consensus         6 ~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~-~-~~~v~W~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~i~~~~~~d~G   82 (254)
                      ..+|.+.+.+.. .+..|+..+|.|.+.|. | ...|+|.+||..+..+. ........++.....+.|.+.   ..+..
T Consensus         3 ~~~P~V~v~~~~-~~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~~~dgtf~~~s~l~v~---~~~~~   78 (99)
T d1uvqa1           3 NEVPEVTVFSKS-PVTLGQPNTLICLVDNIFPPVVNITWLSNGQSVTEGVSETSFLSKSDHSFFKISYLTFL---PSADE   78 (99)
T ss_dssp             CCCCEEEEEESS-CCCTTSCEEEEEEEEEECSSCCEEEEEETTEEECTTEEECCCEECTTSCEEEEEEEEEC---CCTTC
T ss_pred             CcCCEEEEEcCC-cccCCCcEEEEEEEEEEECCCCEEEEEECCEeccCCcEecceEECCCCCEEEEEEEEEc---CCCCC
Confidence            457877765433 25578899999999884 4 46799999999876432 112222223333334445544   45556


Q ss_pred             EEEEEEEcCC
Q psy7036          83 LYKVKAKNKM   92 (254)
Q Consensus        83 ~Y~C~~~~~~   92 (254)
                      .|+|+|.+..
T Consensus        79 ~ytC~V~H~s   88 (99)
T d1uvqa1          79 IYDCKVEHWG   88 (99)
T ss_dssp             CEEEEEECTT
T ss_pred             EEEEEEEeCC
Confidence            8999998764

>d1fo0b_ b.1.1.1 (B:) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.54  E-value=1.4e-06  Score=53.06  Aligned_cols=78  Identities=17%  Similarity=0.228  Sum_probs=50.7

Q ss_pred             CeeEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeC--CEE---eee---C--------CcceEEEeecCCcceEEEEE
Q psy7036           9 PSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRG--ETQ---LSE---D--------TRTVMKTTPIGTNKYLVALE   72 (254)
Q Consensus         9 p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~--~~~---~~~---~--------~~~~~~~~~~~~~~~~~~l~   72 (254)
                      +.+.+.|....+.+|++|+|.|...+.....+.|||.  |+.   +..   .        ...++......    ...|.
T Consensus         2 t~V~Q~P~~~~~~~G~~vtL~C~~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~----~~~l~   77 (112)
T d1fo0b_           2 TLLEQNPRWRLVPRGQAVNLRCILKNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRVT----DTELR   77 (112)
T ss_dssp             CSEEEECSEEECCTTCCEEEEEEESCTTCCEEEEEEECTTCCEEEEEECCSTTCEEEEEETTEEEEEEEEE----TTEEE
T ss_pred             CeEEeCCCeEEECCCCCEEEEEEEecCCCCcEEEEeECCCCCccccceecccccccccccccccccccccc----ccEEE
Confidence            3467788888899999999999986555567899983  221   110   0        00111111000    12688


Q ss_pred             EeccCCCCCeEEEEEEEc
Q psy7036          73 LDDVIETDAGLYKVKAKN   90 (254)
Q Consensus        73 i~~~~~~d~G~Y~C~~~~   90 (254)
                      |.....+|++.|.|....
T Consensus        78 l~~~~~~dsa~Y~Ca~~~   95 (112)
T d1fo0b_          78 LQVANMSQGRTLYCTCSA   95 (112)
T ss_dssp             EEEESCCSCEEEEEEEES
T ss_pred             EecCCccCCccEEEEEec
Confidence            888999999999998653

>d1kcvl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.53  E-value=5e-07  Score=54.54  Aligned_cols=75  Identities=15%  Similarity=0.251  Sum_probs=48.6

Q ss_pred             cCCCeeeecCCCeEEEEEEEeeCCCCeEEEEECC--Ee---c-------ccCCcceEEEcCCCCceeeEEEEccCCCCCc
Q psy7036         117 KKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSG--VQ---V-------KEDKRHKFSIDKDGHSYFASLEIIDVTIEDA  184 (254)
Q Consensus       117 ~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~--~~---~-------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~  184 (254)
                      ..+..+.+.+|++++|.|.........+.||+..  +.   +       ......++.......  ...|.|.+++.+|+
T Consensus         6 QsP~~l~v~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~L~I~~l~~~DS   83 (107)
T d1kcvl1           6 QSPKSMGMSVGEAVTLNCKASENVGTYVSWYQQKPGQSPVLLIYGASNRYTGVPDRFTGSGSAT--DFTLTISSVQADDD   83 (107)
T ss_dssp             ESCSEEEEETTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETT--EEEEEESSCCGGGC
T ss_pred             CcCCEEeECCCCCEEEEEEecCCcCCceEEEEcccCCCCEEEEEecccccCCccceEEeeccCC--eeecEEHhheecCC
Confidence            3455677889999999999776655679999731  11   1       001111222221111  24799999999999


Q ss_pred             eeEEEEEEc
Q psy7036         185 GKYKVTAKN  193 (254)
Q Consensus       185 G~y~C~~~~  193 (254)
                      |.|.|.+..
T Consensus        84 a~YyCa~~~   92 (107)
T d1kcvl1          84 ADYYCGQSY   92 (107)
T ss_dssp             EEEEEEECS
T ss_pred             ceEEEEecC
Confidence            999998653

>d1ymmd1 b.1.1.1 (D:9-104) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.53  E-value=2.8e-09  Score=63.23  Aligned_cols=73  Identities=16%  Similarity=0.273  Sum_probs=46.8

Q ss_pred             ceeecCCCeEEEEEEEeeCCCCceEEEeC--CEEe------------eeCCcceEEEeecCCcceEEEEEEeccCCCCCe
Q psy7036          17 LRQEDEGNRLIFECQLLCNPKPDIVWFRG--ETQL------------SEDTRTVMKTTPIGTNKYLVALELDDVIETDAG   82 (254)
Q Consensus        17 ~~~v~~g~~v~l~C~~~~~~~~~v~W~~~--~~~~------------~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G   82 (254)
                      ++.|.+|++|+|.|.... ....+.|||.  |+.+            ....++......   ......|.|.+++.+|+|
T Consensus         2 slsV~eG~~vtL~C~~~~-~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~---~~~~~~L~I~~~~~~Dsa   77 (96)
T d1ymmd1           2 ALSIQEGENATMNCSYKT-SINNLQWYRQNSGRGLVHLILIRSNEREKHSGRLRVTLDT---SKKSSSLLITASRAADTA   77 (96)
T ss_dssp             CCCCSSCCCCCBCCBCSS-CEEEEEEECCCSSCCCCCCCEEESSSCCCCSSSCCBCCBG---GGTBCCBCCSSCCSTTCS
T ss_pred             CceECCCCCEEEEEEEeC-CcccEEEEEECCCCCccccccccceecccccccceeeccC---cceecccCcCCCCcccCE
Confidence            456889999999998753 3456999973  2211            011122221111   112347999999999999


Q ss_pred             EEEEEEEcCCC
Q psy7036          83 LYKVKAKNKMG   93 (254)
Q Consensus        83 ~Y~C~~~~~~~   93 (254)
                      .|.|.+....+
T Consensus        78 ~YyCA~~~~~g   88 (96)
T d1ymmd1          78 SYFCATDTTSG   88 (96)
T ss_dssp             CCEEEEEETTS
T ss_pred             EEeEeEecCCC
Confidence            99998875544

>d1u9ka_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.52  E-value=7e-07  Score=53.86  Aligned_cols=76  Identities=16%  Similarity=0.257  Sum_probs=48.8

Q ss_pred             CceeecCCCeEEEEEEEeeC--CCCceEEEeC--CE----EeeeCC---------cceEEEeecCCcceEEEEEEeccCC
Q psy7036          16 QLRQEDEGNRLIFECQLLCN--PKPDIVWFRG--ET----QLSEDT---------RTVMKTTPIGTNKYLVALELDDVIE   78 (254)
Q Consensus        16 ~~~~v~~g~~v~l~C~~~~~--~~~~v~W~~~--~~----~~~~~~---------~~~~~~~~~~~~~~~~~l~i~~~~~   78 (254)
                      +...+.+|++|+|.|...+.  ....+.|+|.  ++    .+....         ..++.... ........|+|.+++.
T Consensus         3 ~~~~~~eG~svtl~C~ys~~~~~~~~~~W~rq~pg~~~~~li~~~~~~~~~~~~~~gR~sis~-d~~~~~~~lti~~L~~   81 (110)
T d1u9ka_           3 ERYDLVEGQTLTVKCPFNIMKYANSQKAWQRLPDGKEPLTLVVTQRPFTRPSEVHMGKFTLKH-DPSEAMLQVQMTDLQV   81 (110)
T ss_dssp             EEEEECTTCCEEEEEECCHHHHTTSEEEEEECCTTSCCEEEEECCSSTTSCEEEEETTEEEEE-EGGGTEEEEEECSCCG
T ss_pred             CCCcCCCCCCEEEEEEECCCCccCCcEEEEEECCCCCEEEEEecCCCceeechhhCcEEEEEE-ECCCCEEEEEECcccc
Confidence            34578999999999998753  4556889983  22    111110         11121111 1223445799999999


Q ss_pred             CCCeEEEEEEEcCC
Q psy7036          79 TDAGLYKVKAKNKM   92 (254)
Q Consensus        79 ~d~G~Y~C~~~~~~   92 (254)
                      +|+|.|.|.+....
T Consensus        82 eDsa~YyCa~~~~~   95 (110)
T d1u9ka_          82 TDSGLYRCVIYHPP   95 (110)
T ss_dssp             GGCEEEEEEEECTT
T ss_pred             CCCEEEEEEEeCCC
Confidence            99999999986544

>d1j1pl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.52  E-value=4.7e-07  Score=54.62  Aligned_cols=74  Identities=22%  Similarity=0.297  Sum_probs=48.5

Q ss_pred             CCCeeeecCCCeEEEEEEEeeCCCCeEEEEECC--Eec----------ccCCcceEEEcCCCCceeeEEEEccCCCCCce
Q psy7036         118 KPSIRQEDDGKRLLFECRIQADPAPTVIWSHSG--VQV----------KEDKRHKFSIDKDGHSYFASLEIIDVTIEDAG  185 (254)
Q Consensus       118 ~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~--~~~----------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G  185 (254)
                      .+..+.+.+|++++|.|.........+.|||..  +..          ......++....++.  ...|.|.+++.+|+|
T Consensus         7 ~p~~l~v~~G~~vtL~C~~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~fs~~~~~~--~~~L~I~~~~~~Dsa   84 (107)
T d1j1pl_           7 SPATLSVTPGNSVSLSCRASQSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGT--DFTLSINSVETEDFG   84 (107)
T ss_dssp             ECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETT--EEEEEESSCCGGGCE
T ss_pred             cCCeEEECCCCCEEEEEEecCCCCcceEEEEeCCCCccEEeeecccCCCceeCCcceecccCC--EEEEEEcccCcCCCE
Confidence            345677889999999999765555579999742  111          011111222222222  247999999999999


Q ss_pred             eEEEEEEc
Q psy7036         186 KYKVTAKN  193 (254)
Q Consensus       186 ~y~C~~~~  193 (254)
                      .|.|.+.+
T Consensus        85 ~YyCa~~~   92 (107)
T d1j1pl_          85 MYFCQQAN   92 (107)
T ss_dssp             EEEEEECS
T ss_pred             EEEEEcCC
Confidence            99997643

>d1mjul2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain kappa constant domain, CL-kappa
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.51  E-value=1.5e-07  Score=56.90  Aligned_cols=89  Identities=16%  Similarity=0.160  Sum_probs=54.6

Q ss_pred             CCCCeeEeCCCceeecCCCeEEEEEEEee-CC-CCceEEEeCCEEeeeCCcceE--EEeecCCcceEEEEEEeccCCCCC
Q psy7036           6 DFAPSFTQKPQLRQEDEGNRLIFECQLLC-NP-KPDIVWFRGETQLSEDTRTVM--KTTPIGTNKYLVALELDDVIETDA   81 (254)
Q Consensus         6 ~~~p~~~~~~~~~~v~~g~~v~l~C~~~~-~~-~~~v~W~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~i~~~~~~d~   81 (254)
                      ..+|.+.+.+.......++.++|.|.+.| .| ...|+|++||..+........  ....++.....+.|.|..-.....
T Consensus         3 ~~~P~V~l~~ps~~~~~~~~~tL~Cl~~~f~P~~i~v~W~~ng~~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~W~~g   82 (107)
T d1mjul2           3 DAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERH   82 (107)
T ss_dssp             CBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTC
T ss_pred             CcCCEEEEECCCHHHhcCCceEEEEEEEEeECCCCEEEEEECCEEccCCeEeccccEecCCCCEEEEEEEEECHHHhCCC
Confidence            34676655443322235678999999988 44 468999999998754321111  111222334455777776665556


Q ss_pred             eEEEEEEEcCCCc
Q psy7036          82 GLYKVKAKNKMGE   94 (254)
Q Consensus        82 G~Y~C~~~~~~~~   94 (254)
                      ..|+|.|.+....
T Consensus        83 ~~ytC~V~H~~~~   95 (107)
T d1mjul2          83 NSYTCEATHKTST   95 (107)
T ss_dssp             CEEEEEEECTTCS
T ss_pred             CEEEEEEEECCCC
Confidence            7899999976543

>d1olla1 b.1.1.4 (A:1-95) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.50  E-value=8e-08  Score=56.70  Aligned_cols=68  Identities=15%  Similarity=0.066  Sum_probs=47.0

Q ss_pred             eecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCC
Q psy7036         123 QEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELG  196 (254)
Q Consensus       123 ~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~  196 (254)
                      .+..|++|+|.|... .....+.|+|++........     ........+.+.|.+++..|+|.|+|...+...
T Consensus        14 ~V~~G~~VTL~C~~~-~~~~~f~L~k~g~~~~~~~~-----~~~~~~~~a~F~i~~v~~~~~G~Y~C~y~~~~~   81 (95)
T d1olla1          14 MVPKEKQVTICCQGN-YGAVEYQLHFEGSLFAVDRP-----KPPERINKVKFYIPDMNSRMAGQYSCIYRVGEL   81 (95)
T ss_dssp             EEETTCCEEEEEECC-TTCCEEEEEETTEEEEEECC-----SSCTTCCEEEEEESSCCGGGCEEEEEEEEETTE
T ss_pred             cccCCCcEEEEEecC-CCccEEEEEECCCCcceeEE-----ccCCCccEEEEEEeeeecCCCceEEEEeCCCCC
Confidence            466899999999863 44567999998864321111     001111224799999999999999999877644

>d1t7va1 b.1.1.2 (A:184-277) Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.50  E-value=1.3e-06  Score=51.25  Aligned_cols=80  Identities=20%  Similarity=0.293  Sum_probs=49.5

Q ss_pred             CCeeEeCCCceeecCCCeEEEEEEEee-CC-CCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEE
Q psy7036           8 APSFTQKPQLRQEDEGNRLIFECQLLC-NP-KPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYK   85 (254)
Q Consensus         8 ~p~~~~~~~~~~v~~g~~v~l~C~~~~-~~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~   85 (254)
                      +|.+.+...   ...|+.++|.|.+.| .| ...|+|++||..+............++.....+.|   .+...+...|+
T Consensus         3 PP~V~v~~~---~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~~~~t~~~~s~l---~~~~~~~~~yt   76 (94)
T d1t7va1           3 PPSVVVTSH---QAPGEKKKLKCLAYDFYPGKIDVHWTRAGEVQEPELRGDVLHNGNGTYQSWVVV---AVPPQDTAPYS   76 (94)
T ss_dssp             CCEEEEEEE---ECTTSCEEEEEEEEEEBSSCEEEEEEETTEECCCSEEEEEEETTTTEEEEEEEE---EECTTCCSCEE
T ss_pred             CCEeEEecc---CCCCCCEEEEEEEEeEECCCCEEEEEECCEECCCcEEeeeecCCCCeEEEEEEe---EeCCCCCCEEE
Confidence            566655322   246889999999998 45 45899999999875433322222222222222333   34456667899


Q ss_pred             EEEEcCCC
Q psy7036          86 VKAKNKMG   93 (254)
Q Consensus        86 C~~~~~~~   93 (254)
                      |.+.+...
T Consensus        77 C~V~H~sl   84 (94)
T d1t7va1          77 CHVQHSSL   84 (94)
T ss_dssp             EEEEETTC
T ss_pred             EEEEECCC
Confidence            99987653

>d1vesa_ b.1.1.1 (A:) Novel antigen receptor 12Y-2 {Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor 12Y-2
species: Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]

Probab=98.50  E-value=4.6e-07  Score=55.26  Aligned_cols=74  Identities=24%  Similarity=0.414  Sum_probs=48.8

Q ss_pred             CCCeeeecCCCeEEEEEEEeeC--CCCeEEEEEC--CE----ecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEE
Q psy7036         118 KPSIRQEDDGKRLLFECRIQAD--PAPTVIWSHS--GV----QVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKV  189 (254)
Q Consensus       118 ~~~~~~~~~g~~~~l~C~~~~~--~~~~~~W~~~--~~----~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C  189 (254)
                      .+..+...+|+.++|.|...+.  ....+.||+.  +.    .+....+.........  ....|+|.+++.+|+|.|.|
T Consensus         6 ~P~s~~~~~G~svtL~C~~s~~~~~~~~~~Wyrq~~g~~~~~~~~~~~~~~~~~~~~~--~~~~L~I~~l~~~Dsa~YyC   83 (113)
T d1vesa_           6 TPRTATKETGESLTINCVLRDASFELKDTGWYRTKLGSTNEQSISIGGRYVETVNKGS--KSFSLRISDLRVEDSGTYKC   83 (113)
T ss_dssp             ECSEEEECTTCCEEEEEEEESCSSCCCEEEEEEEETTCCCCEECCCBTTEEEEEETTT--TEEEEEECSCCGGGCEEEEE
T ss_pred             eCCEEEEcCCCCEEEEEEECCCcccCCccceeeeeccccceeeeeecccccceeECCC--CceeeeecccccCCcceEee
Confidence            3456778899999999998753  3346899973  21    1222222222222222  22479999999999999999


Q ss_pred             EEEc
Q psy7036         190 TAKN  193 (254)
Q Consensus       190 ~~~~  193 (254)
                      .+..
T Consensus        84 a~~~   87 (113)
T d1vesa_          84 QAFY   87 (113)
T ss_dssp             EEEE
T ss_pred             eeec
Confidence            9864

>d1mexl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.50  E-value=7.7e-07  Score=53.58  Aligned_cols=75  Identities=20%  Similarity=0.330  Sum_probs=48.2

Q ss_pred             cCCCeeeecCCCeEEEEEEEeeCCCCeEEEEEC--CEe---cc-------cCCcceEEEcCCCCceeeEEEEccCCCCCc
Q psy7036         117 KKPSIRQEDDGKRLLFECRIQADPAPTVIWSHS--GVQ---VK-------EDKRHKFSIDKDGHSYFASLEIIDVTIEDA  184 (254)
Q Consensus       117 ~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~--~~~---~~-------~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~  184 (254)
                      ..+..+.+.+|+.++|.|.........+.||+.  +..   +.       .....++.....+.  ...|.|.+++.+|+
T Consensus         6 Q~p~~l~~~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~rfs~~~~~~--~~~L~I~~~~~~Ds   83 (107)
T d1mexl1           6 QSQKFMSTSLGNRVSVTCKASQNVGTNVAWFQQKPGQSPKTLIYSASYRYSGVPDRFTGSGSGT--DFTLTINNVQSEDL   83 (107)
T ss_dssp             CCCSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETT--EEEEEESSCCGGGC
T ss_pred             cCCCeEEECCCCCEEEEEEeCCCCCCceEEEeccCCcccEEEEEeccccccccCCCeeecCCCC--eeeeeechhheecc
Confidence            344567788999999999976554556899973  111   10       11111222222222  24799999999999


Q ss_pred             eeEEEEEEc
Q psy7036         185 GKYKVTAKN  193 (254)
Q Consensus       185 G~y~C~~~~  193 (254)
                      +.|.|.+..
T Consensus        84 A~YyCa~~~   92 (107)
T d1mexl1          84 AEYFCQQYN   92 (107)
T ss_dssp             SEEEEEECS
T ss_pred             eeEEEeECC
Confidence            999998643

>d2g5ra1 b.1.1.1 (A:24-144) N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.50  E-value=3e-07  Score=57.01  Aligned_cols=76  Identities=21%  Similarity=0.378  Sum_probs=47.9

Q ss_pred             CCeeeecCCCeEEEEEEEeeC----C---CCeEEEEECCEec---------------ccCCcceEEEcCCCCceeeEEEE
Q psy7036         119 PSIRQEDDGKRLLFECRIQAD----P---APTVIWSHSGVQV---------------KEDKRHKFSIDKDGHSYFASLEI  176 (254)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~----~---~~~~~W~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~l~i  176 (254)
                      +..+.+.+|..+.|.|.....    .   ...+.|++....-               ......++....+.....++|.|
T Consensus         8 ~~svtv~~G~~V~ipC~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I   87 (121)
T d2g5ra1           8 QSSVTVQEGMCVHVRCSFSYPVDSQTDSDPVHGYWFRAGNDISWKAPVATNNPAWAVQEETRDRFHLLGDPQTKNCTLSI   87 (121)
T ss_dssp             CSEEEECTTCCEEECCEEECC--CTTTTSCCEEEEEECC-----CCCSEESCTTSCCCTTTTTTEEECSCGGGTBCCEEE
T ss_pred             CCEEEEccCCcEEEEEEEeCCCCCCcccccEEEEeeEecCCCceEEEEeeCCCCceeccccceEEEEeeeCcCCEEEEEE
Confidence            356788899999999997421    1   1347898753221               01111123333322223458999


Q ss_pred             ccCCCCCceeEEEEEEcC
Q psy7036         177 IDVTIEDAGKYKVTAKNE  194 (254)
Q Consensus       177 ~~~~~~d~G~y~C~~~~~  194 (254)
                      .+++.+|+|.|.|.+...
T Consensus        88 ~~v~~~DsG~Y~C~v~~~  105 (121)
T d2g5ra1          88 RDARMSDAGRYFFRMEKG  105 (121)
T ss_dssp             CSCCGGGCEEEEEEEEET
T ss_pred             CCCChHHCEEEEEEEEeC
Confidence            999999999999999754

>d1c5cl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.49  E-value=5.8e-07  Score=54.03  Aligned_cols=73  Identities=22%  Similarity=0.329  Sum_probs=47.4

Q ss_pred             CCeeeecCCCeEEEEEEEeeCCCCeEEEEEC--CEec----------ccCCcceEEEcCCCCceeeEEEEccCCCCCcee
Q psy7036         119 PSIRQEDDGKRLLFECRIQADPAPTVIWSHS--GVQV----------KEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGK  186 (254)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~--~~~~----------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~  186 (254)
                      +..+.+.+|++++|.|.........+.|||.  |+..          ......++.....+.  ...|.|.+++.+|+|.
T Consensus         8 P~s~~~~~G~svtl~C~~s~~~~~~~~Wyrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~L~I~~l~~~Dsa~   85 (107)
T d1c5cl1           8 PSSLSASLGERVSLTCRTSQEISGYLSWLQQKPDGTIKRLIYDATKLDSGAPKRFSGSRSGS--DYSLTISSLESEDFAD   85 (107)
T ss_dssp             CSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTSCTTEEEEEETT--EEEEEESSCCGGGCSE
T ss_pred             CCEEEECCCCCEEEEEEeCCCCCCCEEEEEcCCCCcceeEEeccccccCCCCCceEecccCC--EEEEEEhhhcccCCeE
Confidence            4566788999999999976665556999973  2211          011111121111111  2479999999999999


Q ss_pred             EEEEEEc
Q psy7036         187 YKVTAKN  193 (254)
Q Consensus       187 y~C~~~~  193 (254)
                      |.|.+.+
T Consensus        86 YyCa~~~   92 (107)
T d1c5cl1          86 YYCLQYA   92 (107)
T ss_dssp             EEEEECS
T ss_pred             EEEecCc
Confidence            9997654

>d1sq2n_ b.1.1.1 (N:) Novel antigen receptor (against lysozyme) {Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor (against lysozyme)
species: Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]

Probab=98.48  E-value=1.1e-06  Score=53.27  Aligned_cols=75  Identities=20%  Similarity=0.365  Sum_probs=48.5

Q ss_pred             CCCeeeecCCCeEEEEEEEeeC--CCCeEEEEECC------EecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEE
Q psy7036         118 KPSIRQEDDGKRLLFECRIQAD--PAPTVIWSHSG------VQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKV  189 (254)
Q Consensus       118 ~~~~~~~~~g~~~~l~C~~~~~--~~~~~~W~~~~------~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C  189 (254)
                      .+..+....|+.++|.|...+.  ....+.||+..      ..+....+.........  ....|.|.+++.+|+|.|.|
T Consensus         5 ~P~s~t~~~G~svtl~C~~s~~s~~~~~i~WYrq~~g~~~~~~~~~~gr~~~~~~~~~--~~~~L~I~~l~~~Dsa~YyC   82 (112)
T d1sq2n_           5 TPRSVTKETGESLTINCVLRDASYALGSTCWYRKKSGEGNEESISKGGRYVETVNSGS--KSFSLRINDLTVEDGGTYRC   82 (112)
T ss_dssp             ECSEEEECTTCCEEEEEEECSCSSCCCCEEEEEEETTSCCCEECCCBTTEEEEEETTT--TEEEEEECSCCGGGCEEEEE
T ss_pred             cCCEEEEcCCCCEEEEEEECCCcccCCceEEEEeeccceeeeeeccCCcEeeEEecCC--ceeeeEecCCcCccCEEEeE
Confidence            3456677889999999987543  34579999831      11222222222222221  12479999999999999999


Q ss_pred             EEEcC
Q psy7036         190 TAKNE  194 (254)
Q Consensus       190 ~~~~~  194 (254)
                      .+...
T Consensus        83 A~~~~   87 (112)
T d1sq2n_          83 GLGVA   87 (112)
T ss_dssp             EECBT
T ss_pred             EEecC
Confidence            87654

>d1j8hd1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.47  E-value=8.5e-07  Score=54.29  Aligned_cols=75  Identities=15%  Similarity=0.186  Sum_probs=48.8

Q ss_pred             CCCeeeecCCCeEEEEEEEeeCCCCeEEEEECC--Ee---cc----------cCCcceEEEcCCCCceeeEEEEccCCCC
Q psy7036         118 KPSIRQEDDGKRLLFECRIQADPAPTVIWSHSG--VQ---VK----------EDKRHKFSIDKDGHSYFASLEIIDVTIE  182 (254)
Q Consensus       118 ~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~--~~---~~----------~~~~~~~~~~~~~~~~~~~l~i~~~~~~  182 (254)
                      .+..+.+.+|+.++|.|.........+.||+..  +.   +.          ............  .....|.|.+++.+
T Consensus         6 ~p~~v~~~~G~~vtl~C~~s~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~L~I~~~~~~   83 (115)
T d1j8hd1           6 LGSHVSVSEGALVLLRCNYSSSVPPYLFWYVQYPNQGLQLLLKYTSAATLVKGINGFEAEFKKS--ETSFHLTKPSAHMS   83 (115)
T ss_dssp             SCSEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBGG--GTBCCEEESSCCGG
T ss_pred             CCCeEEEcCCCCEEEEEEeCCCCceeEEEEEccCCCcceeeeEEeecccccccCCCCEEEECCC--CCEEEEeecccccc
Confidence            345677889999999999876555679999831  11   10          001111111111  11236999999999


Q ss_pred             CceeEEEEEEcC
Q psy7036         183 DAGKYKVTAKNE  194 (254)
Q Consensus       183 d~G~y~C~~~~~  194 (254)
                      |+|.|.|.+...
T Consensus        84 Dsa~YyCa~~~~   95 (115)
T d1j8hd1          84 DAAEYFCAVSES   95 (115)
T ss_dssp             GCEEEEEEEESS
T ss_pred             CCccceeeecCC
Confidence            999999998764

>d1jhll_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.47  E-value=1.1e-06  Score=52.95  Aligned_cols=73  Identities=21%  Similarity=0.333  Sum_probs=47.3

Q ss_pred             CCeeeecCCCeEEEEEEEeeCCCCeEEEEECC--Ee---c-------ccCCcceEEEcCCCCceeeEEEEccCCCCCcee
Q psy7036         119 PSIRQEDDGKRLLFECRIQADPAPTVIWSHSG--VQ---V-------KEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGK  186 (254)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~--~~---~-------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~  186 (254)
                      +..+.+.+|+.++|.|.........+.||+..  ..   +       .......+....++.  ...|.|.+++.+|+|.
T Consensus         8 P~~l~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~L~i~~l~~~Dsa~   85 (108)
T d1jhll_           8 PSYLVASPGETITINCRASKSISKSLAWYQEKPGKTNNLLIYSGSTLQSGIPSRFSGSGSGT--DFTLTISSLEPEDFAM   85 (108)
T ss_dssp             CSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEESSS--EEEEEECSCCTTCCSE
T ss_pred             CCeEEecCCCCEEEEEEccCCcCCceEEEEccccCCCeEEEEeeccccCCccccccccCCCC--EEEeEeeeeEeccceE
Confidence            45677889999999999766555579999731  11   1       011111122222222  2479999999999999


Q ss_pred             EEEEEEc
Q psy7036         187 YKVTAKN  193 (254)
Q Consensus       187 y~C~~~~  193 (254)
                      |.|...+
T Consensus        86 YyCA~~~   92 (108)
T d1jhll_          86 YICQQHN   92 (108)
T ss_dssp             EEEEECS
T ss_pred             EEEeeCC
Confidence            9997654

>d1de4a1 b.1.1.2 (A:182-275) Hemochromatosis protein Hfe, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Hemochromatosis protein Hfe, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.47  E-value=7.7e-07  Score=52.07  Aligned_cols=69  Identities=13%  Similarity=0.231  Sum_probs=42.9

Q ss_pred             CCCeEEEEEEEeeC-CC-CeEEEEECCEecccC--CcceEEEcCCCC-ceeeEEEEccCCCCCceeEEEEEEcCCCc
Q psy7036         126 DGKRLLFECRIQAD-PA-PTVIWSHSGVQVKED--KRHKFSIDKDGH-SYFASLEIIDVTIEDAGKYKVTAKNELGE  197 (254)
Q Consensus       126 ~g~~~~l~C~~~~~-~~-~~~~W~~~~~~~~~~--~~~~~~~~~~~~-~~~~~l~i~~~~~~d~G~y~C~~~~~~~~  197 (254)
                      .+..++|.|.+.++ |. ..+.|.+||+.+...  .........++. ...+.|.+.   ..+...|+|.+.+....
T Consensus        14 ~~~~~tL~C~~~gFyP~~i~v~W~~dg~~~~~~~~~~~~~~~~~~~t~~~~s~l~v~---~~~~~~ytC~V~H~sl~   87 (94)
T d1de4a1          14 TSSVTTLRCRALNYYPQNITMKWLKDKQPMDAKEFEPKDVLPNGDGTYQGWITLAVP---PGEEQRYTCQVEHPGLD   87 (94)
T ss_dssp             CSSCEEEEEEEEEEBSSCCEEEEEETTEECCGGGSCCCEEEECTTSCEEEEEEEEEC---TTCGGGEEEEEECTTSS
T ss_pred             CCCCEEEEEEEeeEECCCCEEEEEECCEECccCcccccceEeCCCceEEEEEEEEEC---CCCCCEEEEEEEeCCCC
Confidence            45678999999996 43 379999999988543  222222233322 223344443   34566899999986443

>d1hxmb2 b.1.1.2 (B:124-230) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=98.46  E-value=3e-07  Score=55.50  Aligned_cols=90  Identities=12%  Similarity=0.088  Sum_probs=55.7

Q ss_pred             CCCCCCCeeEeC-CCceeecCCCeEEEEEEEee-CC-CCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCC
Q psy7036           3 IAEDFAPSFTQK-PQLRQEDEGNRLIFECQLLC-NP-KPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIET   79 (254)
Q Consensus         3 ~~~~~~p~~~~~-~~~~~v~~g~~v~l~C~~~~-~~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~   79 (254)
                      +....+|.+.+. |....+..+..++|.|.+.+ .| ...|+|++||..+............++.....+.|.|..... 
T Consensus         3 ~~~~~~P~v~i~~Ps~~e~~~~~~~~l~Clv~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~gt~~~~S~L~v~~~~w-   81 (107)
T d1hxmb2           3 LDADVSPKPTIFLPSIAETKLQKAGTYLCLLEKFFPDVIKIHWEEKKSNTILGSQEGNTMKTNDTYMKFSWLTVPEKSL-   81 (107)
T ss_dssp             CCSCCSCBCCCCCCCGGGGGSSSCEEEEEEEEEESSCCEEEEEEESSSCCCCCCEECCCEECSSSEEEEEEEEECTGGG-
T ss_pred             CCCCCCCeEEEECCCHHHHccCCcEEEEEEEeEEeCCceEEEEEECCeEccCCEEccceecCCCeEEEEEEEEEecccC-
Confidence            345567776654 34445667889999999988 44 457999999987654332222222333344445666654433 


Q ss_pred             CCeEEEEEEEcCCCc
Q psy7036          80 DAGLYKVKAKNKMGE   94 (254)
Q Consensus        80 d~G~Y~C~~~~~~~~   94 (254)
                       ...|+|.+.+....
T Consensus        82 -~~~ytC~V~H~s~~   95 (107)
T d1hxmb2          82 -DKEHRCIVRHENNK   95 (107)
T ss_dssp             -GSCEEEEEEETTSG
T ss_pred             -CCeEEEEEEECCCC
Confidence             23699999976544

>d1muja1 b.1.1.2 (A:84-183) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-A group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-A group [TaxId: 10090]

Probab=98.46  E-value=6.5e-07  Score=53.00  Aligned_cols=74  Identities=15%  Similarity=0.155  Sum_probs=46.7

Q ss_pred             cCCCeEEEEEEEeeCCC--CeEEEEECCEecccCCc-ceEEEcCCC-CceeeEEEEccCCCCCceeEEEEEEcCCCcceE
Q psy7036         125 DDGKRLLFECRIQADPA--PTVIWSHSGVQVKEDKR-HKFSIDKDG-HSYFASLEIIDVTIEDAGKYKVTAKNELGESNA  200 (254)
Q Consensus       125 ~~g~~~~l~C~~~~~~~--~~~~W~~~~~~~~~~~~-~~~~~~~~~-~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~  200 (254)
                      ..|+..+|.|.+.++.+  ..+.|++||..+..... .......++ +...+.|.+.   .++.+.|+|.+.+.......
T Consensus        15 ~~~~~~tL~C~v~gFyP~~i~v~W~~ng~~v~~~~~~t~~~~~~dgtf~~~s~l~v~---~~~~~~ytC~V~H~sl~~pi   91 (100)
T d1muja1          15 LLGQPNTLICFVDNIFPPVINITWLRNSKSVADGVYETSFFVNRDYSFHKLSYLTFI---PSDDDIYDCKVEHWGLEEPV   91 (100)
T ss_dssp             CTTSCEEEEEEEEEECSSCCEEEEEESSSBCCSSEEECCCEECTTSCEEEEEEEEEC---CCTTCCEEEEEECTTSSSCE
T ss_pred             ccCCCEEEEEEEEeEECCCCEEEEEeCCeeccCCceeeeeEECCCCCEEEEEEeEEc---CCCCCEEEEEEEECCCCCce
Confidence            45778899999999743  46999999988754321 112233333 2333455554   34566899999987554443


Q ss_pred             E
Q psy7036         201 T  201 (254)
Q Consensus       201 ~  201 (254)
                      .
T Consensus        92 ~   92 (100)
T d1muja1          92 L   92 (100)
T ss_dssp             E
T ss_pred             e
Confidence            3

>d1op3k1 b.1.1.1 (K:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=98.46  E-value=9.3e-07  Score=53.12  Aligned_cols=74  Identities=19%  Similarity=0.296  Sum_probs=48.4

Q ss_pred             CCCeeeecCCCeEEEEEEEeeCCCCeEEEEECC--E---ec-------ccCCcceEEEcCCCCceeeEEEEccCCCCCce
Q psy7036         118 KPSIRQEDDGKRLLFECRIQADPAPTVIWSHSG--V---QV-------KEDKRHKFSIDKDGHSYFASLEIIDVTIEDAG  185 (254)
Q Consensus       118 ~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~--~---~~-------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G  185 (254)
                      .+..+.+.+|+.++|.|.........+.||+..  +   .+       ......++....++.  ...|.|.+++.+|+|
T Consensus         6 ~P~sl~~~~G~svtL~C~~~~~~~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~f~~~~~~~--~~~L~I~~~~~~Dsa   83 (106)
T d1op3k1           6 SPSTLSASVGDTITITCRASQSIETWLAWYQQKPGKAPKLLIYKASTLKTGVPSRFSGSGSGT--EFTLTISGLQFDDFA   83 (106)
T ss_dssp             ECSEEEECTTCEEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETT--EEEEEEESCCGGGCS
T ss_pred             cCCeEEECCCCCEEEEEEeCCCCCCcEEEEecCCCCCCEEEEEccccCCCCcCCceeeeccCC--EEEEEEccccccCCC
Confidence            356678889999999999765555568999742  1   11       011111222222222  247999999999999


Q ss_pred             eEEEEEEc
Q psy7036         186 KYKVTAKN  193 (254)
Q Consensus       186 ~y~C~~~~  193 (254)
                      .|.|.+..
T Consensus        84 ~YyCa~~~   91 (106)
T d1op3k1          84 TYHCQHYA   91 (106)
T ss_dssp             EEEEEEEC
T ss_pred             cEeeeeCC
Confidence            99998754

>d1tjgl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=98.46  E-value=8.4e-07  Score=53.43  Aligned_cols=74  Identities=20%  Similarity=0.313  Sum_probs=48.2

Q ss_pred             CCCeeeecCCCeEEEEEEEeeCCCCeEEEEECC--Ee---c-------ccCCcceEEEcCCCCceeeEEEEccCCCCCce
Q psy7036         118 KPSIRQEDDGKRLLFECRIQADPAPTVIWSHSG--VQ---V-------KEDKRHKFSIDKDGHSYFASLEIIDVTIEDAG  185 (254)
Q Consensus       118 ~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~--~~---~-------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G  185 (254)
                      .+..+.+.+|+.++|.|.........+.||+..  +.   +       ......++....++  ....|.|.+++.+|++
T Consensus         7 ~P~sl~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~L~I~~l~~~DsA   84 (107)
T d1tjgl1           7 SPSSLSASVGDRITITCRASQGVTSALAWYRQKPGSPPQLLIYDASSLESGVPSRFSGSGSG--TEFTLTISTLRPEDFA   84 (107)
T ss_dssp             ECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEET--TEEEEEESSCCGGGCS
T ss_pred             eCCEEEECCCCCEEEEEEECCCCCccEEEEeccCCccceEEEeecccccCCCCcceEEeccC--CEEEEEeccceeCcCc
Confidence            355677889999999999865555678999832  11   1       01111122222222  2347999999999999


Q ss_pred             eEEEEEEc
Q psy7036         186 KYKVTAKN  193 (254)
Q Consensus       186 ~y~C~~~~  193 (254)
                      .|.|.+.+
T Consensus        85 ~YyCa~~~   92 (107)
T d1tjgl1          85 TYYCQQLH   92 (107)
T ss_dssp             EEEEEECS
T ss_pred             eEEEEECc
Confidence            99997543

>d1lk3l1 b.1.1.1 (L:1-106) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.46  E-value=6.9e-07  Score=53.76  Aligned_cols=72  Identities=18%  Similarity=0.284  Sum_probs=47.2

Q ss_pred             CCeeeecCCCeEEEEEEEeeCCCCeEEEEECC--E---ecc-------cCCcceEEEcCCCCceeeEEEEccCCCCCcee
Q psy7036         119 PSIRQEDDGKRLLFECRIQADPAPTVIWSHSG--V---QVK-------EDKRHKFSIDKDGHSYFASLEIIDVTIEDAGK  186 (254)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~--~---~~~-------~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~  186 (254)
                      +..+.+.+|+.++|.|.........+.||+..  .   .+.       .....++....++.  ...|.|.+++.+|+|.
T Consensus         7 p~s~~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~~~~--~~~L~I~~~~~~Dsa~   84 (106)
T d1lk3l1           7 PPALTVSPGEKLTISCKASESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGSGT--DFTLTIDPVEADDTAI   84 (106)
T ss_dssp             CSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETT--EEEEEESSCCGGGCEE
T ss_pred             CCeEEECCCCCEEEEEEeCCCCCccEEEEecCCCCCcEEEEEecccccCCcCCceeeecCCC--EEEeEECCcChhhCCC
Confidence            34677889999999999876555579999731  1   110       01111222222222  2479999999999999


Q ss_pred             EEEEEE
Q psy7036         187 YKVTAK  192 (254)
Q Consensus       187 y~C~~~  192 (254)
                      |.|...
T Consensus        85 YyCa~~   90 (106)
T d1lk3l1          85 YFCQQS   90 (106)
T ss_dssp             EEEEEC
T ss_pred             cccccc
Confidence            999654

>d1k5nb_ b.1.1.2 (B:) beta2-microglobulin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.46  E-value=9.1e-07  Score=52.42  Aligned_cols=73  Identities=14%  Similarity=0.189  Sum_probs=48.2

Q ss_pred             cCCCeEEEEEEEeeCCC--CeEEEEECCEecccCCcceEEEcCCCC-ceeeEEEEccCCCCCceeEEEEEEcCCCcceE
Q psy7036         125 DDGKRLLFECRIQADPA--PTVIWSHSGVQVKEDKRHKFSIDKDGH-SYFASLEIIDVTIEDAGKYKVTAKNELGESNA  200 (254)
Q Consensus       125 ~~g~~~~l~C~~~~~~~--~~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~  200 (254)
                      ..|+..+|.|.+.|+.+  ..+.|.+||..+............++. ...+.|.+.   .++.+.|+|.+.+.......
T Consensus        17 ~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~v~~~~~~~~~~~~dgty~~~s~l~v~---~~~~~~ytC~V~H~sl~~p~   92 (100)
T d1k5nb_          17 ENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYLLYYTEFT---PTEKDEYACRVNHVTLSQPK   92 (100)
T ss_dssp             CTTSCEEEEEEEEEEBSSCCEEEEEETTEECTTCEECCCEECTTSCEEEEEEEEEC---CCSSCCEEEEEECTTCSSCE
T ss_pred             cCCCCEEEEEEECccCCCCcEEEEEECCEecCCccccceecCCCCcEEEEEEeEEC---CCCCCEEEEEEEeCCCCCCe
Confidence            45788899999999744  368999999988644333344444443 223445443   45667899999986544433

>d1i9ea_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.45  E-value=6.2e-07  Score=54.90  Aligned_cols=74  Identities=14%  Similarity=0.203  Sum_probs=48.0

Q ss_pred             CCCeeeecCCCeEEEEEEEeeCCCCeEEEEEC--CEe---cc----------cCCcceEEEcCCCCceeeEEEEccCCCC
Q psy7036         118 KPSIRQEDDGKRLLFECRIQADPAPTVIWSHS--GVQ---VK----------EDKRHKFSIDKDGHSYFASLEIIDVTIE  182 (254)
Q Consensus       118 ~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~--~~~---~~----------~~~~~~~~~~~~~~~~~~~l~i~~~~~~  182 (254)
                      .+..+.+.+|++++|.|.........+.||+.  +..   +.          ............+.  ...|.|.+++.+
T Consensus         6 ~~~~v~v~~G~svtl~C~~~~~~~~~~~Wyrq~pg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~--~~~L~I~~~~~~   83 (115)
T d1i9ea_           6 PDARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGLQLLLKYYSGDPVVQGVNGFEAEFSKSNS--SFHLRKASVHWS   83 (115)
T ss_dssp             CCSEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBTTTT--BCCEEESSCCGG
T ss_pred             CCCeEEECCCCCEEEEEEEcCCCCCCEEEEEECCCCceeeeeeeccceeccccCcceeEEEeCcCC--EEEEeccccccc
Confidence            34567788999999999987655667889972  111   10          00111122222222  237999999999


Q ss_pred             CceeEEEEEEc
Q psy7036         183 DAGKYKVTAKN  193 (254)
Q Consensus       183 d~G~y~C~~~~  193 (254)
                      |+|.|.|.+..
T Consensus        84 Dsg~YyCa~~~   94 (115)
T d1i9ea_          84 DSAVYFCAVSG   94 (115)
T ss_dssp             GCEEEEEEEEE
T ss_pred             ccceecccccC
Confidence            99999998764

>d1f3dh1 b.1.1.1 (H:1-121) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.45  E-value=2e-06  Score=51.65  Aligned_cols=72  Identities=13%  Similarity=0.169  Sum_probs=45.5

Q ss_pred             ceeecCCCeEEEEEEEeeC--CCCceEEEeC--CEEe------e---------eCCcceEEEeecCCcceEEEEEEeccC
Q psy7036          17 LRQEDEGNRLIFECQLLCN--PKPDIVWFRG--ETQL------S---------EDTRTVMKTTPIGTNKYLVALELDDVI   77 (254)
Q Consensus        17 ~~~v~~g~~v~l~C~~~~~--~~~~v~W~~~--~~~~------~---------~~~~~~~~~~~~~~~~~~~~l~i~~~~   77 (254)
                      ...+.+|++++|.|.+.|.  ....+.|++.  |+.+      .         ...+.++....+... ....|.|.+++
T Consensus         9 ~~~~kPG~sl~LsC~~SG~s~~~y~~~W~RQ~PGkglewl~~i~~~~~~~~y~~~~~gRftis~D~s~-~t~~L~i~~l~   87 (115)
T d1f3dh1           9 PELVKPGASVKVSCKASGYSFIDYNIHWVKQSHGKSLEWIGYIVPYSGGTTFNQKFKGKATLTVDKSS-STAFMHLNSLT   87 (115)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGBTTEEEEEETTT-TEEEEEECSCC
T ss_pred             CcEECCCCCEEEEEEEccccCCCCCcceeEEcCCCccEEeeccCCCCCcccccceeeEEEEEeeccCc-eeeEeeeeecC
Confidence            3468999999999999874  3456889872  2211      1         011112222222221 22369999999


Q ss_pred             CCCCeEEEEEEE
Q psy7036          78 ETDAGLYKVKAK   89 (254)
Q Consensus        78 ~~d~G~Y~C~~~   89 (254)
                      .+|++.|.|...
T Consensus        88 ~eDtAvYYCAr~   99 (115)
T d1f3dh1          88 FEDSAVYYCAND   99 (115)
T ss_dssp             GGGCEEEEEEEC
T ss_pred             cCCcEEEEEecc
Confidence            999999999653

>d1nfde2 b.1.1.2 (E:108-215) Immunoglobulin light chain lambda constant domain, CL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=98.45  E-value=2.1e-08  Score=60.41  Aligned_cols=88  Identities=13%  Similarity=0.119  Sum_probs=55.4

Q ss_pred             CCCeeEeCCCceeecCCCeEEEEEEEee-CC-CCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEE
Q psy7036           7 FAPSFTQKPQLRQEDEGNRLIFECQLLC-NP-KPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLY   84 (254)
Q Consensus         7 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~-~~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y   84 (254)
                      .+|.+.+.+....-..+++++|.|.+.| .| ...|.|++||..+............++.....+.|.|......+...|
T Consensus         4 ~~P~V~v~~ps~~~~~~~~~~l~C~~~gf~P~~i~v~W~~~g~~~~~~~~~~~~~~~~~tys~~S~l~v~~~~w~~~~~y   83 (104)
T d1nfde2           4 SSPKVTVFPPSPEELRTNKATLVCLVNDFYPGSATVTWKANGATINDGVKTTKPSKQGQNYMTSSYLSLTADQWKSHNRV   83 (104)
T ss_dssp             BCCEEECCCCCHHHHHTTEECCCEEEEEEBSSCCEEEEEETTEEECSSCBCCCCBCSSSCEEEEEBCCEEHHHHHTCSCE
T ss_pred             cCCEEEEECCCHHHHcCCcEEEEEEEEEeeCCCCEEEEEECCEECCCCEEeccccCCCceEEEEEEEEEcHHHcCCCCEE
Confidence            4576665443322234678999999988 44 458999999998865433222222233333445666666665666789


Q ss_pred             EEEEEcCCCc
Q psy7036          85 KVKAKNKMGE   94 (254)
Q Consensus        85 ~C~~~~~~~~   94 (254)
                      +|.|.+....
T Consensus        84 tC~V~H~~~~   93 (104)
T d1nfde2          84 SCQVTHEGET   93 (104)
T ss_dssp             EEEEECTTTT
T ss_pred             EEEEEECCCc
Confidence            9999976543

>d1fltx_ b.1.1.4 (X:) Second domain of the Flt-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Second domain of the Flt-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.44  E-value=6.9e-07  Score=52.03  Aligned_cols=74  Identities=15%  Similarity=0.264  Sum_probs=53.1

Q ss_pred             eeEeCCCceeecCCCeEEEEEEEeeCCCCceEEE-eCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEE
Q psy7036          10 SFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWF-RGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKA   88 (254)
Q Consensus        10 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~   88 (254)
                      .+...|+.+.+.+|+++.+.|.+. +|..+++.+ .++..+.... ..+......      -+.|.++...++|.|.|.+
T Consensus         7 ~~~~~p~~V~v~eg~~~vIPC~vT-~P~~~VtL~~~~~~~~~p~g-~~v~~Dpk~------Gf~I~~~~~~~~g~y~C~a   78 (95)
T d1fltx_           7 MYSEIPEIIHMTEGRELVIPCRVT-SPNITVTLKKFPLDTLIPDG-KRIIWDSRK------GFIISNATYKEIGLLTCEA   78 (95)
T ss_dssp             CCCSSCEEEEECTTSCEEECCCBS-CTTSCCEEEETTTEEECCCS-SSEEEETTT------EEEESSCCGGGCEEEEEEE
T ss_pred             CCCCCCCEEEEeCCCCEEEEccCC-CCCceeEEEeccCCccCCCC-CEEEECCCC------CEEEeCCCcccCeEEEEEE
Confidence            334456677899999999999997 677776554 4666554332 223333333      4999999999999999999


Q ss_pred             EcC
Q psy7036          89 KNK   91 (254)
Q Consensus        89 ~~~   91 (254)
                      ...
T Consensus        79 ~~~   81 (95)
T d1fltx_          79 TVN   81 (95)
T ss_dssp             EET
T ss_pred             EEC
Confidence            855

>d1dn0b2 b.1.1.2 (B:121-225) Immunoglobulin heavy chain mu constant domain 1, CH1-mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain mu constant domain 1, CH1-mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.44  E-value=1.1e-06  Score=52.63  Aligned_cols=88  Identities=13%  Similarity=0.057  Sum_probs=50.3

Q ss_pred             CCee-EeCCCceeecCCCeEEEEEEEee-CC-CCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCC--CCe
Q psy7036           8 APSF-TQKPQLRQEDEGNRLIFECQLLC-NP-KPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIET--DAG   82 (254)
Q Consensus         8 ~p~~-~~~~~~~~v~~g~~v~l~C~~~~-~~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~--d~G   82 (254)
                      +|.+ ...+........+.++|.|.+.| .| ...|+|.++|..+............++.....+.|.|......  ...
T Consensus         5 ~P~V~~l~p~~~~~~~~~~~~l~Cl~~gF~P~~i~v~W~~~~~~~~~~~~~~~~~~~~gtys~~S~L~v~~~eW~~~~~~   84 (105)
T d1dn0b2           5 APTLFPLVSCENSPSDTSSVAVGCLAQDFLPDSITFSWKYKNNSDISSTRGFPSVLRGGKYAATSQVLLPSKDVMAGTDE   84 (105)
T ss_dssp             CCEEEEEECC------CCSEEEEEEEEEEBSSCCEEEEEETTSCEECCEEECCCEEETTEEEEEEEEEECTTCC---CCC
T ss_pred             CCeEEeECCCccccCCCCceEEEEEEecccCCcEEEEEEECCccccCCEEcceEEccCCCEEEEEEEEEcHHHhccCCCC
Confidence            4543 33443334445678999999988 45 4689999998765443222112223344444556777655443  234


Q ss_pred             EEEEEEEcCCCce
Q psy7036          83 LYKVKAKNKMGEV   95 (254)
Q Consensus        83 ~Y~C~~~~~~~~~   95 (254)
                      .|+|.+.+..+..
T Consensus        85 ~ytC~V~H~~~~~   97 (105)
T d1dn0b2          85 HVVCKVQHPNGNK   97 (105)
T ss_dssp             EEEEEEECTTCCE
T ss_pred             EEEEEEEECCCCE
Confidence            7999999876543

>d1i8lc_ b.1.1.1 (C:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.44  E-value=2.9e-07  Score=56.70  Aligned_cols=77  Identities=16%  Similarity=0.209  Sum_probs=47.4

Q ss_pred             CCCceeecCCCeEEEEEEEeeCCCC---ceEEEeCC--E---Eee----eCCcceE---EEeecCCcceEEEEEEeccCC
Q psy7036          14 KPQLRQEDEGNRLIFECQLLCNPKP---DIVWFRGE--T---QLS----EDTRTVM---KTTPIGTNKYLVALELDDVIE   78 (254)
Q Consensus        14 ~~~~~~v~~g~~v~l~C~~~~~~~~---~v~W~~~~--~---~~~----~~~~~~~---~~~~~~~~~~~~~l~i~~~~~   78 (254)
                      .|..+.+.+|++|+|.|........   .+.|||..  +   .+.    .......   ...........+.|.|.+++.
T Consensus         5 QP~~~~~~~g~~vtL~C~~~~~~~~~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~   84 (118)
T d1i8lc_           5 QPAVVLASSRGIASFVCEYASPGKATEVRVTVLRQADSQVTEVCAATYMMGNELTFLDDSICTGTSSGNQVNLTIQGLRA   84 (118)
T ss_dssp             CCSEEECCSSSCEEEEEEECCCSCCSEEEEEEEEESTTCCCEEEEEEEETTSCCCCCSSCSCCCCBCSSEEEEEECSCCG
T ss_pred             CCCEEEEeCCCcEEEEEEccccccccceeEEEEEECCCCeeEEEEEEeCCCCEecccCCcEEeEcCCCCEEEEEeecccc
Confidence            3667788999999999998543222   58899832  1   110    0000000   000011123356899999999


Q ss_pred             CCCeEEEEEEEc
Q psy7036          79 TDAGLYKVKAKN   90 (254)
Q Consensus        79 ~d~G~Y~C~~~~   90 (254)
                      +|+|.|.|.+..
T Consensus        85 ~Dsa~YyCa~~~   96 (118)
T d1i8lc_          85 MDTGLYICKVEL   96 (118)
T ss_dssp             GGCEEEEEEEEE
T ss_pred             CCCEEEEEeEec
Confidence            999999998764

>d3frua1 b.1.1.2 (A:179-269) Fc (IgG) receptor, alpha-3 domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Fc (IgG) receptor, alpha-3 domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.43  E-value=3.3e-06  Score=49.03  Aligned_cols=79  Identities=14%  Similarity=0.224  Sum_probs=50.3

Q ss_pred             CCeeEeCCCceeecCCCeEEEEEEEee-CC-CCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEE
Q psy7036           8 APSFTQKPQLRQEDEGNRLIFECQLLC-NP-KPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYK   85 (254)
Q Consensus         8 ~p~~~~~~~~~~v~~g~~v~l~C~~~~-~~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~   85 (254)
                      +|.+.+...   ...+..++|.|.+.| .| ...|+|++||..+... ........++.....+.|.+.   ..+...|+
T Consensus         3 PP~V~v~~~---~~~~~~~~L~C~~~gF~P~~i~v~W~~ng~~~~~~-~~~~~~~~dgty~~~S~l~v~---~~~~~~yt   75 (91)
T d3frua1           3 PPSMRLKAR---PGNSGSSVLTCAAFSFYPPELKFRFLRNGLASGSG-NCSTGPNGDGSFHAWSLLEVK---RGDEHHYQ   75 (91)
T ss_dssp             CCEEEEEEE---ECSTTEEEEEEEEEEEBSSCCEEEEEETTEECCCC-EEEEEECSSSCEEEEEEEEEE---TTCGGGEE
T ss_pred             CCEEEEEec---CCCCCCEEEEEEEEeEECCCCEEEEEECCEeCCcc-CccceecCCCCEeEEEEEEEC---CCCCCEEE
Confidence            566654322   234568999999998 45 4689999999887543 223333334444445566664   34567899


Q ss_pred             EEEEcCCC
Q psy7036          86 VKAKNKMG   93 (254)
Q Consensus        86 C~~~~~~~   93 (254)
                      |++.+...
T Consensus        76 C~V~H~sL   83 (91)
T d3frua1          76 CQVEHEGL   83 (91)
T ss_dssp             EEEECTTS
T ss_pred             EEEEeCCC
Confidence            99997643

>d1fp5a2 b.1.1.2 (A:439-543) Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.43  E-value=3.2e-07  Score=55.13  Aligned_cols=73  Identities=22%  Similarity=0.332  Sum_probs=48.3

Q ss_pred             CCCeEEEEEEEeeCCC--CeEEEEECCEecccCCcc--eEEEcCC-CCceeeEEEEccCCCCCceeEEEEEEcCCCcc
Q psy7036         126 DGKRLLFECRIQADPA--PTVIWSHSGVQVKEDKRH--KFSIDKD-GHSYFASLEIIDVTIEDAGKYKVTAKNELGES  198 (254)
Q Consensus       126 ~g~~~~l~C~~~~~~~--~~~~W~~~~~~~~~~~~~--~~~~~~~-~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~  198 (254)
                      .++.++|.|.+.++.+  ..+.|.++|..+......  ......+ .+...+.|.|..-.......|+|.+.+.....
T Consensus        18 ~~~~vtL~Clv~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~~~gtys~~S~L~v~~~~W~~g~~ytC~V~H~~l~~   95 (105)
T d1fp5a2          18 SRDKRTLACLIQNFMPEDISVQWLHNEVQLPDARHSTTQPRKTKGSGFFVFSRLEVTRAEWEQKDEFICRAVHEAASP   95 (105)
T ss_dssp             SSCCEEEEEEEEEEBSSCCEEEEEETTEECCGGGEEECCCEECSSSCEEEEEEEEECHHHHTTGGGEEEEEECTTSTT
T ss_pred             cCCcEEEEEEEEeeeCCCcEEEEEECCEECCCceeEeeeeEecCCCCEEEEEEEEECHHHcCCCCEEEEEEEECCCCC
Confidence            4567899999988543  479999999987543211  1122233 33445678887665556668999999875543

>d1d5mb1 b.1.1.2 (B:93-190) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DR group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DR group [TaxId: 9606]

Probab=98.43  E-value=9.8e-07  Score=52.13  Aligned_cols=82  Identities=13%  Similarity=0.264  Sum_probs=45.9

Q ss_pred             CCeeEeCCCceeecCCCeEEEEEEEee-CC-CCceEEEeCCEEeeeCCcc-eEEEeecCCcceEEEEEEeccCCCCCeEE
Q psy7036           8 APSFTQKPQLRQEDEGNRLIFECQLLC-NP-KPDIVWFRGETQLSEDTRT-VMKTTPIGTNKYLVALELDDVIETDAGLY   84 (254)
Q Consensus         8 ~p~~~~~~~~~~v~~g~~v~l~C~~~~-~~-~~~v~W~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y   84 (254)
                      +|.+.+.+.. ....++..+|.|.+.| .| ...|+|++||..+..+... ....  ++.+.+.. +....+...+...|
T Consensus         4 ~P~V~l~~~~-~~~~~~~~tL~C~v~~F~P~~i~v~W~~~g~~~~~~~~~~~~~~--~~dgtf~~-~s~l~~~~~~~~~y   79 (98)
T d1d5mb1           4 YPEVTVYPAK-TQPLQHHNLLVCSVNGFYPGSIEVRWFRNGQEEKTGVVSTGLIQ--NGDWTFQT-LVMLETVPRSGEVY   79 (98)
T ss_dssp             CCEEEEEEC---------CEEEEEEEEEBSSCCEEEEEETTEECCSSEEECCCEE--CSSSCEEE-EEEEECCCCTTCEE
T ss_pred             CCEEEEECCC-ccccCCceEEEEEEeeeECCCcEEEEEECCEEcCCCCEECeEEe--CCCcEEEE-EEEeeEcCCCCCEE
Confidence            5666654433 2345677899999988 34 4589999999987543211 1112  22222322 22234557778899


Q ss_pred             EEEEEcCCC
Q psy7036          85 KVKAKNKMG   93 (254)
Q Consensus        85 ~C~~~~~~~   93 (254)
                      +|.+.+...
T Consensus        80 tC~V~H~sl   88 (98)
T d1d5mb1          80 TCQVEHPSV   88 (98)
T ss_dssp             EEEEECTTC
T ss_pred             EEEEEECCC
Confidence            999997653

>d2h26a1 b.1.1.2 (A:184-279) CD1, alpha-3 domain {Human (Homo sapiens), CD1a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: CD1, alpha-3 domain
species: Human (Homo sapiens), CD1a [TaxId: 9606]

Probab=98.42  E-value=5.7e-07  Score=52.93  Aligned_cols=68  Identities=21%  Similarity=0.272  Sum_probs=46.1

Q ss_pred             CCCeEEEEEEEee-CCC-CceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcCC
Q psy7036          22 EGNRLIFECQLLC-NPK-PDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKM   92 (254)
Q Consensus        22 ~g~~v~l~C~~~~-~~~-~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~   92 (254)
                      .++.++|.|.+.| .|. ..|+|++++..+............++.....+.|.|..   .|...|+|.+.+..
T Consensus        15 ~~~~vtL~C~a~gF~P~~i~v~W~~~~~~~~~~~~~~~~~~~dgty~~~S~L~v~~---~~~~~ytC~V~H~s   84 (96)
T d2h26a1          15 GPGRLQLVCHVSGFYPKPVWVMWMRGEQEQQGTQLGDILPNANWTWYLRATLDVAD---GEAAGLSCRVKHSS   84 (96)
T ss_dssp             STTEEEEEEEEEEEBSSCEEEEEEETTEECTTCEECCCEECTTSCEEEEEEEEEEG---GGCTTEEEEEEEGG
T ss_pred             CCCeEEEEEEEEEEECCCcEEEEEECcccCCCceeCccEeCCCCcEEEEEEEEEeC---ccCCEEEEEEEeCC
Confidence            4568999999988 554 48999999987654433333334444444455677764   34557999998754

>d2atpb1 b.1.1.1 (B:1-115) CD8 {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.42  E-value=5.1e-07  Score=55.32  Aligned_cols=76  Identities=16%  Similarity=0.231  Sum_probs=47.8

Q ss_pred             CCCeeeecCCCeEEEEEEEeeC-CCCeEEEEEC-----CEec------ccC---------CcceEEEcCCCCceeeEEEE
Q psy7036         118 KPSIRQEDDGKRLLFECRIQAD-PAPTVIWSHS-----GVQV------KED---------KRHKFSIDKDGHSYFASLEI  176 (254)
Q Consensus       118 ~~~~~~~~~g~~~~l~C~~~~~-~~~~~~W~~~-----~~~~------~~~---------~~~~~~~~~~~~~~~~~l~i  176 (254)
                      .+..+.+.+|++++|.|...+. ....+.||+.     ++.+      ...         ...++....+.......|.|
T Consensus         4 ~P~~~~v~~G~sv~l~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I   83 (115)
T d2atpb1           4 TPSSLLVQTNHTAKMSCEVKSISKLTSIYWLRERQDPKDKYFEFLASWSSSKGVLYGESVDKKRNIILESSDSRRPFLSI   83 (115)
T ss_dssp             ECSEEEECTTSCEEEEEECCSSCCSSEEEEEEEEECSSCEEEEEEEEEETTTEEEECGGGTTTCCEEEESTTSSSCEEEE
T ss_pred             eCCcEEEcCCCCEEEEEEEeCCCCCCceEEEEeecCCCCeEEEEeeEEecccCcEecCCcCCCCEEEEEeCCCCeEEEee
Confidence            3456778899999999998763 4456899974     2211      000         11111111111112347999


Q ss_pred             ccCCCCCceeEEEEEEc
Q psy7036         177 IDVTIEDAGKYKVTAKN  193 (254)
Q Consensus       177 ~~~~~~d~G~y~C~~~~  193 (254)
                      .+++.+|+|.|.|.+..
T Consensus        84 ~~~~~~Dsg~Y~Ca~~~  100 (115)
T d2atpb1          84 MNVKPEDSDFYFCATVG  100 (115)
T ss_dssp             CSCCGGGCEEEEEEEEC
T ss_pred             cccCCCCCcEEEEeEcC
Confidence            99999999999998753

>d1bd2d1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.42  E-value=1.6e-06  Score=52.59  Aligned_cols=74  Identities=16%  Similarity=0.264  Sum_probs=48.7

Q ss_pred             CCCeeeecCCCeEEEEEEEeeCCCCeEEEEEC--CEe---cc---------cCCcceEEEcCCCCceeeEEEEccCCCCC
Q psy7036         118 KPSIRQEDDGKRLLFECRIQADPAPTVIWSHS--GVQ---VK---------EDKRHKFSIDKDGHSYFASLEIIDVTIED  183 (254)
Q Consensus       118 ~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~--~~~---~~---------~~~~~~~~~~~~~~~~~~~l~i~~~~~~d  183 (254)
                      .+..+.+.+|+.++|.|.........+.||+.  ++.   +.         ...+.........  ....|.|.+++.+|
T Consensus         6 ~p~s~~~~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~L~I~~~~~~D   83 (111)
T d1bd2d1           6 NSPSLSVQEGRISILNCDYTNSMFDYFLWYKKYPAEGPTFLISISSIKDKNADGRFTVFLNKSA--KHLSLHIVPSQPGD   83 (111)
T ss_dssp             CCSEEEEETTSCEEEEEEECCTTCCEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTT--TEEEEEESSCCGGG
T ss_pred             cCCEEEEcCCCCEEEEEEeCCCCCCeEEEEEECCCCcceeeeeeeceeccccCCcceEEEEccC--CEEEEEECCCcccc
Confidence            34556778999999999976665567899983  111   10         0111122222222  24589999999999


Q ss_pred             ceeEEEEEEc
Q psy7036         184 AGKYKVTAKN  193 (254)
Q Consensus       184 ~G~y~C~~~~  193 (254)
                      +|.|.|.+..
T Consensus        84 sa~YyCa~~~   93 (111)
T d1bd2d1          84 SAVYFCAAME   93 (111)
T ss_dssp             CEEEEEEEES
T ss_pred             cEEEEeeccC
Confidence            9999998764

>d1akjd_ b.1.1.1 (D:) CD8 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.41  E-value=9.2e-07  Score=53.99  Aligned_cols=73  Identities=19%  Similarity=0.269  Sum_probs=46.4

Q ss_pred             CCeeeecCCCeEEEEEEEeeCC-CCeEEEEECCE--e------cc----------cCCcceEEEcCCCCceeeEEEEccC
Q psy7036         119 PSIRQEDDGKRLLFECRIQADP-APTVIWSHSGV--Q------VK----------EDKRHKFSIDKDGHSYFASLEIIDV  179 (254)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~~-~~~~~W~~~~~--~------~~----------~~~~~~~~~~~~~~~~~~~l~i~~~  179 (254)
                      |....+..|++++|.|...... ...+.|+|...  .      +.          .....++.......  ...|.|.++
T Consensus         7 P~~~t~~~G~~vtL~C~~~~~~~~~~i~WyrQ~~g~~~~~~~~i~~~~~~~~~~~~~~~~rfs~~~~~~--~~~L~I~~l   84 (114)
T d1akjd_           7 PLDRTWNLGETVELKCQVLLSNPTSGCSWLFQPRGAAASPTFLLYLSQNKPKAAEGLDTQRFSGKRLGD--TFVLTLSDF   84 (114)
T ss_dssp             CCSCCCCTTCCEEEEEEECCSSCCSCEEEEEECSSTTCCCEEEEEESSSCCEECTTCCTTTEEEEEETT--EEEEEESSC
T ss_pred             CCcEeccCCCcEEEEEEeCCCcCCCCEEEEEECCCCCcEEEEEEecCCCeeEcCCCCCCcEEEEECCCC--ChhcEEccC
Confidence            3455677899999999976543 34689998321  0      00          00111222222222  247999999


Q ss_pred             CCCCceeEEEEEEc
Q psy7036         180 TIEDAGKYKVTAKN  193 (254)
Q Consensus       180 ~~~d~G~y~C~~~~  193 (254)
                      +.+|+|.|.|.+..
T Consensus        85 ~~~Dsg~YyCa~~~   98 (114)
T d1akjd_          85 RRENEGYYFCSALS   98 (114)
T ss_dssp             CGGGCEEEEEEEEE
T ss_pred             CCCCCEEEeEeEcC
Confidence            99999999999864

>d1ow0a2 b.1.1.2 (A:343-450) Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.41  E-value=3e-07  Score=55.65  Aligned_cols=86  Identities=12%  Similarity=0.183  Sum_probs=55.7

Q ss_pred             CCCeeEeC-CCceeecCCCeEEEEEEEee-CC-CCceEEEeCCEEeeeCCcceE--EE---eecCCcceEEEEEEeccCC
Q psy7036           7 FAPSFTQK-PQLRQEDEGNRLIFECQLLC-NP-KPDIVWFRGETQLSEDTRTVM--KT---TPIGTNKYLVALELDDVIE   78 (254)
Q Consensus         7 ~~p~~~~~-~~~~~v~~g~~v~l~C~~~~-~~-~~~v~W~~~~~~~~~~~~~~~--~~---~~~~~~~~~~~l~i~~~~~   78 (254)
                      .+|.+... |....+..|+.++|.|.+.+ .| ...|+|++||+.+........  ..   ..++.....+.|.|..-..
T Consensus         3 ~~P~V~~~~p~~~e~~~~~~~tl~C~~~~f~P~~i~v~W~~~g~~~~~~~~~t~~~~~~~~~~~gtys~~S~L~v~~~~w   82 (108)
T d1ow0a2           3 FRPEVHLLPPPSEELALNELVTLTCLARGFSPKDVLVRWLQGSQELPREKYLTWASRQEPSQGTTTFAVTSILRVAAEDW   82 (108)
T ss_dssp             CCCEEEEECCCTTTTTSSSEEEEEEEEEEESSSCCEEEEEETTEECCGGGSEECCCEECSCSSSCCEEEEEEEEEEHHHH
T ss_pred             CCCEEEEECCCHHHhccCCceEEEEEEEEeECCCEEEEEEECCeEcCCCceEcccceecccCCCCcEEEEEEEEEcHHHh
Confidence            46776543 44445667889999999988 44 458999999998865432211  11   1122223455677776655


Q ss_pred             CCCeEEEEEEEcCC
Q psy7036          79 TDAGLYKVKAKNKM   92 (254)
Q Consensus        79 ~d~G~Y~C~~~~~~   92 (254)
                      .....|+|.|.+..
T Consensus        83 ~~g~~ytC~V~H~s   96 (108)
T d1ow0a2          83 KKGDTFSCMVGHEA   96 (108)
T ss_dssp             HHTCCEEEEEECTT
T ss_pred             CCCCEEEEEEEeCC
Confidence            55679999998754

>d1c5cl2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain kappa constant domain, CL-kappa
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.41  E-value=5.9e-07  Score=54.17  Aligned_cols=87  Identities=15%  Similarity=0.165  Sum_probs=53.4

Q ss_pred             CCeeEeCCCceeecCCCeEEEEEEEee-CC-CCceEEEeCCEEeeeCCcceEEE--eecCCcceEEEEEEeccCCCCCeE
Q psy7036           8 APSFTQKPQLRQEDEGNRLIFECQLLC-NP-KPDIVWFRGETQLSEDTRTVMKT--TPIGTNKYLVALELDDVIETDAGL   83 (254)
Q Consensus         8 ~p~~~~~~~~~~v~~g~~v~l~C~~~~-~~-~~~v~W~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~i~~~~~~d~G~   83 (254)
                      +|.+...+.......++.++|.|.+.+ .| ...|+|++||..+..........  ..++.....+.|.|..-.......
T Consensus         5 ~P~V~l~~Ps~~~~~~~~~~L~Clv~~f~P~~i~v~W~~ng~~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~W~~~~~   84 (107)
T d1c5cl2           5 APSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKV   84 (107)
T ss_dssp             CCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEECCSSEEEEECCCCTTTCCEEEEEEEEEEHHHHTTCCE
T ss_pred             CCEEEEECCCHHHhcCCceEEEEEEEEeeCCCCEEEEEECCEECCCCEEEecccccCCCCcEEEEEEEEECHHHhCCCCE
Confidence            566554332222334678999999988 45 45899999998765432211111  112233445577787665555668


Q ss_pred             EEEEEEcCCCc
Q psy7036          84 YKVKAKNKMGE   94 (254)
Q Consensus        84 Y~C~~~~~~~~   94 (254)
                      |+|.|.+....
T Consensus        85 ytC~V~H~~~~   95 (107)
T d1c5cl2          85 YACEVTHQGLS   95 (107)
T ss_dssp             EEEEEECTTCS
T ss_pred             EEEEEEECCCC
Confidence            99999976543

>d1lk2b_ b.1.1.2 (B:) beta2-microglobulin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.41  E-value=1.9e-06  Score=51.00  Aligned_cols=73  Identities=16%  Similarity=0.227  Sum_probs=47.8

Q ss_pred             CCCeEEEEEEEeeCCC--CeEEEEECCEecccCCcceEEEcCCCC-ceeeEEEEccCCCCCceeEEEEEEcCCCcceEE
Q psy7036         126 DGKRLLFECRIQADPA--PTVIWSHSGVQVKEDKRHKFSIDKDGH-SYFASLEIIDVTIEDAGKYKVTAKNELGESNAT  201 (254)
Q Consensus       126 ~g~~~~l~C~~~~~~~--~~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~  201 (254)
                      .|+.++|.|.+.|+.+  ..+.|.++|..+............++. ...+.|.+.   .++.+.|+|.+.+........
T Consensus        17 ~~~~~tL~C~v~gf~P~~i~V~W~~~g~~~~~~~~~~~~~~~dgtf~~~s~l~v~---~~~~~~ytC~V~H~sl~~p~~   92 (99)
T d1lk2b_          17 NGKPNILNCYVTQFHPPHIEIQMLKNGKKIPKVEMSDMSFSKDWSFYILAHTEFT---PTETDTYACRVKHDSMAEPKT   92 (99)
T ss_dssp             TTSCEEEEEEEEEEBSSCCEEEEEETTEECTTCEEEEEEECTTCCEEEEEEEEEC---CCSSCCEEEEEECTTSSSCEE
T ss_pred             CCCcEEEEEEEEEEECCCcEEEEeeCCeecCCcEECceeECCCCCEEEEEEeEec---CcCCCEEEEEEEeCCCCCCeE
Confidence            5778899999998643  369999999988654433333444442 333445543   455668999999875544433

>d2agjh1 b.1.1.1 (H:1-120) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=98.40  E-value=2.8e-06  Score=51.52  Aligned_cols=73  Identities=16%  Similarity=0.198  Sum_probs=45.6

Q ss_pred             ceeecCCCeEEEEEEEeeCC----CCceEEEeC--CEE---e---ee--------CCcceEEEeecCCcceEEEEEEecc
Q psy7036          17 LRQEDEGNRLIFECQLLCNP----KPDIVWFRG--ETQ---L---SE--------DTRTVMKTTPIGTNKYLVALELDDV   76 (254)
Q Consensus        17 ~~~v~~g~~v~l~C~~~~~~----~~~v~W~~~--~~~---~---~~--------~~~~~~~~~~~~~~~~~~~l~i~~~   76 (254)
                      ...+.+|++|+|.|.+.|..    ...+.|||.  |+.   +   ..        .-..++....+.. .....|.|.++
T Consensus         9 ~~~v~PG~sv~LsC~~SG~s~ss~~~~~~WyRQ~Pg~~le~l~~i~~~~~~~~~~~~~gRft~s~d~s-~~~~~L~i~~l   87 (120)
T d2agjh1           9 PTLVKPTQTLTLTCTFSGFSLTTTGEGVGWIRQPPGKALEFLAFIYWNDAKRYNPSLQSRLTITKDAS-KKQVVLTLTNL   87 (120)
T ss_dssp             CSBCCSSSEEEEEEEEESCCTTSSSCEEEEEEECTTSCCEEEEEEEGGGCEEECGGGCSSEEEECCTT-TTEEEEEEESC
T ss_pred             CeeECCCCCEEEEEEEcccCccCCCCeEeeccccccccceeeecccCCcccccchhhccccceecccc-cceeeeeEEee
Confidence            34678999999999987632    245789973  221   1   00        0011222222222 22347999999


Q ss_pred             CCCCCeEEEEEEEc
Q psy7036          77 IETDAGLYKVKAKN   90 (254)
Q Consensus        77 ~~~d~G~Y~C~~~~   90 (254)
                      +.+|++.|.|....
T Consensus        88 ~~eDsAvYyCAr~~  101 (120)
T d2agjh1          88 DPVDTATYYCARTS  101 (120)
T ss_dssp             CGGGCEEEEEEEEC
T ss_pred             eeccceEEeeEecC
Confidence            99999999997543

>d2mhaa1 b.1.1.2 (A:182-270) Class I MHC, alpha-3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC, alpha-3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.40  E-value=2.2e-06  Score=49.59  Aligned_cols=79  Identities=13%  Similarity=0.200  Sum_probs=50.5

Q ss_pred             CCeeEeCCCceeecCCCeEEEEEEEeeC-C-CCceEEEeCCEEeeeCCcc-eEEEeecCCcceEEEEEEeccCCCCCeEE
Q psy7036           8 APSFTQKPQLRQEDEGNRLIFECQLLCN-P-KPDIVWFRGETQLSEDTRT-VMKTTPIGTNKYLVALELDDVIETDAGLY   84 (254)
Q Consensus         8 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~-~-~~~v~W~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y   84 (254)
                      +|.+.+..   ....++.++|.|.+.|. | ...|+|.++|+.+..+... ......++.....+.|.|..   .+...|
T Consensus         3 pP~v~v~~---~~~~~~~~~L~C~a~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~---~~~~~y   76 (89)
T d2mhaa1           3 SPKAHVTH---HSRPEDKVTLRCWALGFYPADITLTWQLNGEELIQDMELVETRPAGDGTFQKWASVVVPL---GKEQYY   76 (89)
T ss_dssp             CCEEEECC---EESCSSEEEEEEEEESCBSSCCEEEEEETTEEECTTCEECCCEECSSSCEEEEEEEEEES---STTTTC
T ss_pred             CCEeEEEc---cCCCCCCEEEEEEEEeEECCCCEEEEEECCEEeCCCEEECcEecCCCCcEEEEEEEEecC---cCCCEE
Confidence            56665533   23456789999999884 3 4578999999987644322 23333444444455666653   344479


Q ss_pred             EEEEEcCC
Q psy7036          85 KVKAKNKM   92 (254)
Q Consensus        85 ~C~~~~~~   92 (254)
                      +|.|.+..
T Consensus        77 tC~V~H~~   84 (89)
T d2mhaa1          77 TCHVYHQG   84 (89)
T ss_dssp             EEEEECSS
T ss_pred             EEEEEECC
Confidence            99998754

>d7fabh1 b.1.1.1 (H:1-116) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=98.39  E-value=4.2e-06  Score=50.12  Aligned_cols=74  Identities=15%  Similarity=0.150  Sum_probs=46.8

Q ss_pred             ceeecCCCeEEEEEEEeeCC--CCceEEEeC--CEE------ee--------eCCcceEEEeecCCcceEEEEEEeccCC
Q psy7036          17 LRQEDEGNRLIFECQLLCNP--KPDIVWFRG--ETQ------LS--------EDTRTVMKTTPIGTNKYLVALELDDVIE   78 (254)
Q Consensus        17 ~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~--~~~------~~--------~~~~~~~~~~~~~~~~~~~~l~i~~~~~   78 (254)
                      ...+.+|++++|+|.+.|..  ...+.|+|.  |+-      +.        ..-+.++....+. ......|.|.+++.
T Consensus         9 ~~lvkPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwlg~i~~~~~~~y~~~~kgR~tis~D~-s~~~~~L~i~~L~~   87 (116)
T d7fabh1           9 PGLVRPSQTLSLTCTVSGTSFDDYYWTWVRQPPGRGLEWIGYVFYTGTTLLDPSLRGRVTMLVNT-SKNQFSLRLSSVTA   87 (116)
T ss_dssp             CSEECTTSCEEEEEEEESSCSTTSEEEEEEECTTSCCEEEEEECTTSCEEECGGGTTTEEEEEET-TTTEEEEEECSCCG
T ss_pred             CceECCCCCEEEEEEEeeecCCCCcceeceECCCCcceeeeeecccccceeccceeecceeeccc-chhhhhcccccccc
Confidence            44688999999999998743  456889872  211      11        1111122222211 12234799999999


Q ss_pred             CCCeEEEEEEEcC
Q psy7036          79 TDAGLYKVKAKNK   91 (254)
Q Consensus        79 ~d~G~Y~C~~~~~   91 (254)
                      +|++.|.|.....
T Consensus        88 eDtAvYyCAr~~~  100 (116)
T d7fabh1          88 ADTAVYYCARNLI  100 (116)
T ss_dssp             GGCEEEEEEEECS
T ss_pred             ccceEEEeeeecC
Confidence            9999999976543

>d1igtb3 b.1.1.2 (B:236-361) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Mouse (Mus musculus), gamma2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Mouse (Mus musculus), gamma2 [TaxId: 10090]

Probab=98.39  E-value=9e-07  Score=54.42  Aligned_cols=86  Identities=17%  Similarity=0.193  Sum_probs=57.2

Q ss_pred             CCeeEe-CCCce-eecCCCeEEEEEEEeeC-C---CCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCC
Q psy7036           8 APSFTQ-KPQLR-QEDEGNRLIFECQLLCN-P---KPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDA   81 (254)
Q Consensus         8 ~p~~~~-~~~~~-~v~~g~~v~l~C~~~~~-~---~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~   81 (254)
                      .|.+.. .|... ....++.++|.|.+.+. |   ...++|+++|..+............++.....+.|.|..-.....
T Consensus        15 ~PsV~i~pPs~~e~~~~~~~~~L~C~v~gf~P~~~~v~v~W~~~g~~~~~~~~~~~~~~~~gt~s~~S~L~v~~~eW~~g   94 (119)
T d1igtb3          15 GPSVFIFPPKIKDVLMISLSPIVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTLRVVSALPIQHQDWMSG   94 (119)
T ss_dssp             CCEEEEECCCHHHHHCTTSCCEEEEEEEEECTTCCCCEEEEEETTEECSSTTCBCCEEECSSSEEEEEEEECCHHHHHTT
T ss_pred             CCEEEEECCChHHhcccCCceEEEEEeecccCCCCcEEEEEeeCCcccCCCEECccEECCCCcEEEEEEEEEeHHHhCCC
Confidence            455443 34332 23568899999999873 4   357899999998865544444444555555566777766555556


Q ss_pred             eEEEEEEEcCCC
Q psy7036          82 GLYKVKAKNKMG   93 (254)
Q Consensus        82 G~Y~C~~~~~~~   93 (254)
                      ..|+|.|.+...
T Consensus        95 ~~ytC~V~H~~l  106 (119)
T d1igtb3          95 KEFKCKVNNKDL  106 (119)
T ss_dssp             CEEEEEEECTTC
T ss_pred             CeEEEEEEECCC
Confidence            689999997653

>d2gj6d1 b.1.1.1 (D:15-114) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.39  E-value=1.7e-06  Score=50.71  Aligned_cols=66  Identities=20%  Similarity=0.349  Sum_probs=42.8

Q ss_pred             CCeEEEEEEEeeCCCCeEEEEECCE--e---c---c-----cCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEc
Q psy7036         127 GKRLLFECRIQADPAPTVIWSHSGV--Q---V---K-----EDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKN  193 (254)
Q Consensus       127 g~~~~l~C~~~~~~~~~~~W~~~~~--~---~---~-----~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~  193 (254)
                      |+.++|.|.........+.|||...  .   +   .     ...++........  ....|.|.+++.+|+|.|.|.+..
T Consensus         1 G~~vtl~C~~~~~~~~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~rf~~~~~~~~--~~~sL~I~~~~~~Dsg~YyCa~~~   78 (94)
T d2gj6d1           1 GAIASLNCTYSDRGSQSFFWYRQYSGKSPELIMSIYSNGDKEDGRFTAQLNKAS--QYVSLLIRDSQPSDSATYLCAVTT   78 (94)
T ss_dssp             TSCEEEEEEECCTTCCEEEEEEECTTSCCEEEEEECSSEEEEETTEEEEEETTT--TEEEEEECSCCGGGCEEEEEEEES
T ss_pred             CccEEEEEEEccccCCcEEEEEECCCcccccceeeeeeccCCCCcEEEEecCCC--CEEeEEeeccccCcCccceeeEec
Confidence            6889999998766667899998321  1   1   0     0111111111222  235799999999999999999875


Q ss_pred             C
Q psy7036         194 E  194 (254)
Q Consensus       194 ~  194 (254)
                      .
T Consensus        79 ~   79 (94)
T d2gj6d1          79 D   79 (94)
T ss_dssp             S
T ss_pred             C
Confidence            4

>d1vgeh1 b.1.1.1 (H:1-122) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=98.38  E-value=3.4e-06  Score=50.87  Aligned_cols=77  Identities=13%  Similarity=0.199  Sum_probs=48.7

Q ss_pred             eCCCceeecCCCeEEEEEEEeeCC--CCceEEEeC--CEE------eee---------CCcceEEEeecCCcceEEEEEE
Q psy7036          13 QKPQLRQEDEGNRLIFECQLLCNP--KPDIVWFRG--ETQ------LSE---------DTRTVMKTTPIGTNKYLVALEL   73 (254)
Q Consensus        13 ~~~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~--~~~------~~~---------~~~~~~~~~~~~~~~~~~~l~i   73 (254)
                      .++....+.+|++++|+|.+.|..  ...+.|+|.  |+.      +..         .-+.++....+.. .....|.|
T Consensus         6 ~~sg~~~vkpg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwlg~i~~~~~~~~ya~s~kgR~tiS~D~s-~ntvyL~~   84 (122)
T d1vgeh1           6 EQSGAEVKKPGASVKVSCKASGYSFTSYGLHWVRQAPGQRLEWMGWISAGTGNTKYSQKFRGRVTFTRDTS-ATTAYMGL   84 (122)
T ss_dssp             EECCCEEECTTCCEEEEEEECSSCGGGSEEEEEEECTTSCEEEEEEEETTTCCEEECGGGTTTEEEEEETT-TTEEEEEE
T ss_pred             EecCCcEECCCCCEEEEEEEcCCCccCCCceeeEeCCCCceeeeeeecCcccccccccceeEeeEEeccCC-cceeeecc
Confidence            345556789999999999998754  445889872  111      111         1112222222221 12336999


Q ss_pred             eccCCCCCeEEEEEEEc
Q psy7036          74 DDVIETDAGLYKVKAKN   90 (254)
Q Consensus        74 ~~~~~~d~G~Y~C~~~~   90 (254)
                      .+++.+|++.|.|....
T Consensus        85 ~~L~~eDtA~YYCAr~~  101 (122)
T d1vgeh1          85 SSLRPEDTAVYYCARDP  101 (122)
T ss_dssp             CSCCGGGCEEEEEEEET
T ss_pred             cccCCCcceEEEEeecC
Confidence            99999999999997653

>d1mqkl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.38  E-value=1.1e-06  Score=53.07  Aligned_cols=74  Identities=22%  Similarity=0.289  Sum_probs=48.2

Q ss_pred             CCCeeeecCCCeEEEEEEEeeCCCCeEEEEECC--E---ecc-------cCCcceEEEcCCCCceeeEEEEccCCCCCce
Q psy7036         118 KPSIRQEDDGKRLLFECRIQADPAPTVIWSHSG--V---QVK-------EDKRHKFSIDKDGHSYFASLEIIDVTIEDAG  185 (254)
Q Consensus       118 ~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~--~---~~~-------~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G  185 (254)
                      .|..+.+.+|+.++|.|.........+.||+..  +   .+.       .....++....+..  ...|.|.+++.+|+|
T Consensus         7 sP~~l~~~~G~svtL~C~~s~~~~~~i~WYrQ~pg~~p~~li~~~~~~~~~~~~~fs~~~~~~--~~~L~I~~~~~~DSa   84 (109)
T d1mqkl_           7 TPVSLSASVGETVTITCRASENIYSYLAWYQQKQGKSPQFLVYNAKTLGEGVPSRFSGSGSGT--QFSLKINSLLPEDFG   84 (109)
T ss_dssp             ECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETT--EEEEEESSCCGGGCE
T ss_pred             cCCEEEECCCCCEEEEEEeCCCcCcccceeeccccCCCeEEEEeeccccCCcCCCEEEeccCC--EEEEEEccccccCCe
Confidence            345677888999999999765555569999831  1   110       11111222222222  247999999999999


Q ss_pred             eEEEEEEc
Q psy7036         186 KYKVTAKN  193 (254)
Q Consensus       186 ~y~C~~~~  193 (254)
                      .|.|.+..
T Consensus        85 ~YyCA~~~   92 (109)
T d1mqkl_          85 SYYCQHHY   92 (109)
T ss_dssp             EEEEEECS
T ss_pred             eEEEeeeC
Confidence            99998753

>d2ak4d1 b.1.1.1 (D:1-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.38  E-value=1.7e-06  Score=52.79  Aligned_cols=77  Identities=9%  Similarity=0.156  Sum_probs=48.7

Q ss_pred             CCCeeeecCCCeEEEEEEEeeC-CCCeEEEEEC--CEe---cc---c-------CCcceEEEcCCCCceeeEEEEccCCC
Q psy7036         118 KPSIRQEDDGKRLLFECRIQAD-PAPTVIWSHS--GVQ---VK---E-------DKRHKFSIDKDGHSYFASLEIIDVTI  181 (254)
Q Consensus       118 ~~~~~~~~~g~~~~l~C~~~~~-~~~~~~W~~~--~~~---~~---~-------~~~~~~~~~~~~~~~~~~l~i~~~~~  181 (254)
                      .+..+.+.+|++++|.|..... ....+.||+.  +..   +.   .       .....+.....+  ....|.|.+++.
T Consensus         6 ~~~~v~v~~G~~VtL~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~L~I~~~~~   83 (114)
T d2ak4d1           6 AQTEISVVEKEDVTLDCVYETRDTTYYLFWYKQPPSGELVFLIRRNSFDEQNEISGRYSWNFQKST--SSFNFTITASQV   83 (114)
T ss_dssp             CCCEEEEETTCCEEECCEEECSCSSCEEEEEEECTTCCCEEEEEEETTSCSEEEETTEEEEEETTT--TEEEEEESSCCG
T ss_pred             cCCeEEEeCCCCEEEEEEEcCCCcCccEEEEEccccCcceEeeeEeeeeecCCCCcceEEEEcCCC--CEEEEeeccccc
Confidence            3456678899999999986543 3446889983  211   10   0       011122222222  234799999999


Q ss_pred             CCceeEEEEEEcCCC
Q psy7036         182 EDAGKYKVTAKNELG  196 (254)
Q Consensus       182 ~d~G~y~C~~~~~~~  196 (254)
                      +|+|.|.|.+....+
T Consensus        84 ~Dsg~YyCa~~~~~~   98 (114)
T d2ak4d1          84 VDSAVYFCALSGFYN   98 (114)
T ss_dssp             GGCEEEEEEEECSBT
T ss_pred             ccCCCceEeCCCCCC
Confidence            999999998876543

>d1u3ha1 b.1.1.1 (A:2-116) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.38  E-value=6.6e-07  Score=54.36  Aligned_cols=73  Identities=21%  Similarity=0.244  Sum_probs=46.9

Q ss_pred             CCeeeecCCCeEEEEEEEeeCCCCeEEEEECC--Eec---c---------cCCcceEEEcCCCCceeeEEEEccCCCCCc
Q psy7036         119 PSIRQEDDGKRLLFECRIQADPAPTVIWSHSG--VQV---K---------EDKRHKFSIDKDGHSYFASLEIIDVTIEDA  184 (254)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~--~~~---~---------~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~  184 (254)
                      +..+.+.+|+.++|.|.........+.||+..  ...   .         ...+.......  ......|.|.++..+|+
T Consensus         6 P~~~~~~~G~~vtl~C~~~~~~~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~L~I~~~~~~Ds   83 (110)
T d1u3ha1           6 PQSLTVWEGETAILNCSYENSAFDYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNK--REKKLSLHIADSQPGDS   83 (110)
T ss_dssp             CSSEEEETTSCEEEEEEECCTTEEEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEET--GGGEEEEEESSCCTTSC
T ss_pred             CCEEEEcCCCCEEEEEEecCCCCcEEEEEeeccccceeeeeeeccccccccccceeEEECC--CCCeeEeEeccCCCCCc
Confidence            44567788999999999765544568999741  110   0         00111111111  11235799999999999


Q ss_pred             eeEEEEEEc
Q psy7036         185 GKYKVTAKN  193 (254)
Q Consensus       185 G~y~C~~~~  193 (254)
                      |.|.|.+..
T Consensus        84 a~YyCa~~~   92 (110)
T d1u3ha1          84 ATYFCAASA   92 (110)
T ss_dssp             SEEEECCEE
T ss_pred             eeEeeeecC
Confidence            999998764

>d1iqdb1 b.1.1.1 (B:1-114) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=98.37  E-value=2.6e-06  Score=51.07  Aligned_cols=77  Identities=12%  Similarity=0.232  Sum_probs=48.5

Q ss_pred             CCceeecCCCeEEEEEEEeeCC--CCceEEEeC--CEE------eee---------CCcceEEEeecCCcceEEEEEEec
Q psy7036          15 PQLRQEDEGNRLIFECQLLCNP--KPDIVWFRG--ETQ------LSE---------DTRTVMKTTPIGTNKYLVALELDD   75 (254)
Q Consensus        15 ~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~--~~~------~~~---------~~~~~~~~~~~~~~~~~~~l~i~~   75 (254)
                      +....+.+|++|+|+|.+.|..  ...+.|+|.  |+.      +..         ....++....+.. .....|.|.+
T Consensus         7 sg~~~~kPg~sv~LsC~~SG~s~~~y~~~W~RQ~PGkglEwlg~i~~~~~~~~y~~~~~gR~tiS~D~s-~~t~~L~i~~   85 (117)
T d1iqdb1           7 SGAEVKKPGASVKVSCKVSGYTLTELPVHWVRQAPGKGLEWVGSFDPESGESIYAREFQGSVTMTADTS-TNIAYMELSS   85 (117)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETT-TTEEEEEECS
T ss_pred             ECCceECCCCCEEEEEEEcCCCCCCCCEEEEEECCCCceeeeeecCCccccceecceeeeeeeeecccc-cceEEEeecc
Confidence            3345789999999999998753  456789872  211      111         1112222222211 1223699999


Q ss_pred             cCCCCCeEEEEEEEcCC
Q psy7036          76 VIETDAGLYKVKAKNKM   92 (254)
Q Consensus        76 ~~~~d~G~Y~C~~~~~~   92 (254)
                      ++.+|++.|.|......
T Consensus        86 L~~eDtAvYYCA~~~~~  102 (117)
T d1iqdb1          86 LRSDDTAVYYCAVPDPD  102 (117)
T ss_dssp             CCGGGCEEEEEEECSSS
T ss_pred             cCcCcceEEEEeEcCCC
Confidence            99999999999876543

>d1xaua_ b.1.1.4 (A:) B and T lymphocyte attenuator, Btla {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: B and T lymphocyte attenuator, Btla
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.37  E-value=1.1e-05  Score=44.42  Aligned_cols=85  Identities=14%  Similarity=0.274  Sum_probs=57.0

Q ss_pred             eeeecCCCeEEEEEEEee-CCCCeEEEEEC-CE---ecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCC
Q psy7036         121 IRQEDDGKRLLFECRIQA-DPAPTVIWSHS-GV---QVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNEL  195 (254)
Q Consensus       121 ~~~~~~g~~~~l~C~~~~-~~~~~~~W~~~-~~---~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~  195 (254)
                      ...+..|+.+.|.|.+.- ...|.++|-|- +.   .+.........-..+.......|.+..+-.+|.|.|+|.|....
T Consensus        12 ~hs~~~G~~f~leCPVkYC~~RPnVtWCKlngt~cv~Le~~pq~~TsW~e~~nis~FvLhF~pvl~sDnGsYrCSanf~s   91 (104)
T d1xaua_          12 KHSAWTGELFKIECPVKYCVHRPNVTWCKHNGTIWVPLEVGPQLYTSWEENRSVPVFVLHFKPIHLSDNGSYSCSTNFNS   91 (104)
T ss_dssp             EEEECTTSCEEEEEEEECSSSCCCEEEEEECSSSEEECCCBTTEEEEEECSSSSCEEEEEETTCCGGGCEEEEEEEEETT
T ss_pred             eeeEecCCceEecCcchhhcCCCCcEEEEeCCcEEEEeecCCccccchhhcCCeeEEEEEeeeeeecCCCceEEecCCCh
Confidence            446778999999999864 45778999874 32   23322333333444455545579999999999999999998765


Q ss_pred             Ccc-eEEEEEE
Q psy7036         196 GES-NATISLN  205 (254)
Q Consensus       196 ~~~-~~~~~~~  205 (254)
                      +-. +.++++.
T Consensus        92 ~vieSHSvti~  102 (104)
T d1xaua_          92 QVINSHSVTIH  102 (104)
T ss_dssp             EEEECCCEEEE
T ss_pred             hheecceEEEE
Confidence            543 3344443

>d1d5il1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.36  E-value=2e-06  Score=51.71  Aligned_cols=73  Identities=23%  Similarity=0.336  Sum_probs=47.4

Q ss_pred             CCeeeecCCCeEEEEEEEeeCCCCeEEEEECC--Ee---cc-------cCCcceEEEcCCCCceeeEEEEccCCCCCcee
Q psy7036         119 PSIRQEDDGKRLLFECRIQADPAPTVIWSHSG--VQ---VK-------EDKRHKFSIDKDGHSYFASLEIIDVTIEDAGK  186 (254)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~--~~---~~-------~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~  186 (254)
                      +..+.+.+|+.++|.|.........+.||+..  ..   +.       .....++....++.  ...|.|.+++.+|+|.
T Consensus         8 P~sl~~~~G~svtl~C~~s~~~~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~rf~~~~~~~--~~~L~I~~~~~~Dsa~   85 (107)
T d1d5il1           8 PSSMYASLGERVTITCKASQDINSYLSWFQQKPGKSPKTLIYRANRLVDGVPSRFSGSGSGQ--DYSLTISSLEYEDMGI   85 (107)
T ss_dssp             CSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETT--EEEEEESSCCGGGCEE
T ss_pred             CCEEEECCCCCEEEEEEcCCCCCCccceeEeccccCeEEEEEeccccccCcCCceeecccCC--EEEccccccCCcCCEE
Confidence            45677889999999999766555568899741  11   10       11111222222221  2489999999999999


Q ss_pred             EEEEEEc
Q psy7036         187 YKVTAKN  193 (254)
Q Consensus       187 y~C~~~~  193 (254)
                      |.|....
T Consensus        86 YyCa~~~   92 (107)
T d1d5il1          86 YYCLQYD   92 (107)
T ss_dssp             EEEEECS
T ss_pred             EEeeecc
Confidence            9997654

>d1uvqb1 b.1.1.2 (B:95-191) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=98.36  E-value=1.4e-06  Score=51.36  Aligned_cols=82  Identities=18%  Similarity=0.304  Sum_probs=45.8

Q ss_pred             CCeeEeCCCceeecCCCeEEEEEEEee-CC-CCceEEEeCCEEeeeCCcc-eEEEeecCCcceEEEEEEeccCCCCCeEE
Q psy7036           8 APSFTQKPQLRQEDEGNRLIFECQLLC-NP-KPDIVWFRGETQLSEDTRT-VMKTTPIGTNKYLVALELDDVIETDAGLY   84 (254)
Q Consensus         8 ~p~~~~~~~~~~v~~g~~v~l~C~~~~-~~-~~~v~W~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y   84 (254)
                      +|.+.+.+.. ....|+.++|.|.+.| .| ...|+|.+||..+..+... ......++.....+.|.   +...+...|
T Consensus         2 ~P~V~v~p~~-~~~~~~~~tL~C~~~gF~P~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~s~l~---v~~~~~~~y   77 (97)
T d1uvqb1           2 EPTVTISPSR-TEALNHHNLLVCSVTDFYPGQIKVRWFRNDQEETAGVVSTPLIRNGDWTFQILVMLE---MTPQRGDVY   77 (97)
T ss_dssp             CCEEEEEEC---------CEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEECSSSCEEEEEEEE---CCSCTTCCE
T ss_pred             CCEEEEecCC-cccCCCCEEEEEEEeeeECCCeEEEEEECCEEcCCCcEeceeecCCCceEEEEEEec---cCCCCCCEE
Confidence            4666654433 2345778899999988 34 5689999999876543211 12222223333333443   356677799


Q ss_pred             EEEEEcCCC
Q psy7036          85 KVKAKNKMG   93 (254)
Q Consensus        85 ~C~~~~~~~   93 (254)
                      +|.+.+...
T Consensus        78 tC~V~H~sl   86 (97)
T d1uvqb1          78 TCHVEHPSL   86 (97)
T ss_dssp             EEEEECTTC
T ss_pred             EEEEEeCCC
Confidence            999987654

>d1q0xl2 b.1.1.2 (L:108-212) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.36  E-value=7.1e-07  Score=53.29  Aligned_cols=71  Identities=17%  Similarity=0.159  Sum_probs=47.3

Q ss_pred             CCCeEEEEEEEeeCCC--CeEEEEECCEecccCCc-ceEEEcCCC-CceeeEEEEccCCCCCceeEEEEEEcCCC
Q psy7036         126 DGKRLLFECRIQADPA--PTVIWSHSGVQVKEDKR-HKFSIDKDG-HSYFASLEIIDVTIEDAGKYKVTAKNELG  196 (254)
Q Consensus       126 ~g~~~~l~C~~~~~~~--~~~~W~~~~~~~~~~~~-~~~~~~~~~-~~~~~~l~i~~~~~~d~G~y~C~~~~~~~  196 (254)
                      .+..+.|.|.+.++.+  ..|.|.++|..+..... .......++ +...+.|.|..-.......|+|.|.+...
T Consensus        19 ~~~~~tl~C~v~~f~P~~i~v~W~~~g~~~~~~~~t~~~~~~~dgtys~~S~L~v~~~~w~~~~~ytC~V~H~~~   93 (102)
T d1q0xl2          19 STAKATLVCTITDFYPGVVTVDWKVDGTPVTAGMETTQPSKQSNNKYMASSYLTLTARAWERHSSYSCQVTHEGH   93 (102)
T ss_dssp             TTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEECTTSCEEEEEEEEEEHHHHTTCCEEEEEEEETTE
T ss_pred             CCCeEEEEEEEeeeeCCCCEEEEEECCEECCCCeEecccEEcCCCCEEEEEEEEECHHHhCCCCEEEEEEEECCc
Confidence            3567899999988643  46999999988754321 122233333 34557788876555566799999998654

>d1xaua_ b.1.1.4 (A:) B and T lymphocyte attenuator, Btla {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: B and T lymphocyte attenuator, Btla
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.36  E-value=4.4e-06  Score=46.08  Aligned_cols=78  Identities=14%  Similarity=0.240  Sum_probs=52.9

Q ss_pred             CCceeecCCCeEEEEEEEee-CCCCceEEEe-CCE---EeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEE
Q psy7036          15 PQLRQEDEGNRLIFECQLLC-NPKPDIVWFR-GET---QLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAK   89 (254)
Q Consensus        15 ~~~~~v~~g~~v~l~C~~~~-~~~~~v~W~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~   89 (254)
                      -....+..|+.+.|.|.+.- -..|+++|-| +|.   ++........... ...+-....|.+..+-++|.|.|+|.+.
T Consensus        10 ~S~hs~~~G~~f~leCPVkYC~~RPnVtWCKlngt~cv~Le~~pq~~TsW~-e~~nis~FvLhF~pvl~sDnGsYrCSan   88 (104)
T d1xaua_          10 NSKHSAWTGELFKIECPVKYCVHRPNVTWCKHNGTIWVPLEVGPQLYTSWE-ENRSVPVFVLHFKPIHLSDNGSYSCSTN   88 (104)
T ss_dssp             TEEEEECTTSCEEEEEEEECSSSCCCEEEEEECSSSEEECCCBTTEEEEEE-CSSSSCEEEEEETTCCGGGCEEEEEEEE
T ss_pred             cceeeEecCCceEecCcchhhcCCCCcEEEEeCCcEEEEeecCCccccchh-hcCCeeEEEEEeeeeeecCCCceEEecC
Confidence            34557899999999999965 4578999987 332   3333323222222 2223334478999999999999999987


Q ss_pred             cCCC
Q psy7036          90 NKMG   93 (254)
Q Consensus        90 ~~~~   93 (254)
                      -..+
T Consensus        89 f~s~   92 (104)
T d1xaua_          89 FNSQ   92 (104)
T ss_dssp             ETTE
T ss_pred             CChh
Confidence            5544

>d1dr9a1 b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD80, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.36  E-value=6.8e-07  Score=53.80  Aligned_cols=72  Identities=13%  Similarity=0.197  Sum_probs=47.2

Q ss_pred             eeecCCCeEEEEEEEeeCC----CCeEEEEECCEecccC----------CcceEEEcCCCCceeeEEEEccCCCCCceeE
Q psy7036         122 RQEDDGKRLLFECRIQADP----APTVIWSHSGVQVKED----------KRHKFSIDKDGHSYFASLEIIDVTIEDAGKY  187 (254)
Q Consensus       122 ~~~~~g~~~~l~C~~~~~~----~~~~~W~~~~~~~~~~----------~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y  187 (254)
                      +....|+.++|.|......    .-.+.|.+++..+...          ...+......+.   .+|.|.+++.+|+|.|
T Consensus         4 Vt~~~G~~a~L~C~~~~~~~~~~~~~v~w~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~g~---~sL~I~~v~~~D~G~Y   80 (105)
T d1dr9a1           4 VTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNN---LSIVILALRPSDEGTY   80 (105)
T ss_dssp             EEEETTSCEEECCSCCCCTTHHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEEESTTT---TEEEECSCCGGGCEEE
T ss_pred             EEEEeCCCEEEEEEECCcccceeEEEEEEEecceEEEEEEeccceeecceeeeeeeccCCc---EEEEECcCChHHCeEE
Confidence            4566899999999864322    1357888877554211          111222233332   3899999999999999


Q ss_pred             EEEEEcCCC
Q psy7036         188 KVTAKNELG  196 (254)
Q Consensus       188 ~C~~~~~~~  196 (254)
                      .|.+.+..+
T Consensus        81 ~C~V~~~~~   89 (105)
T d1dr9a1          81 ECVVLKYEK   89 (105)
T ss_dssp             EEEEEECCT
T ss_pred             EEEEEeCCC
Confidence            999986544

>d1smoa_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.35  E-value=7e-07  Score=54.51  Aligned_cols=74  Identities=11%  Similarity=0.227  Sum_probs=45.7

Q ss_pred             eeeecCCCeEEEEEEEee--CCCCeEEEEECCE--e---cc---c-------CCcceEEEcCCCCceeeEEEEccCCCCC
Q psy7036         121 IRQEDDGKRLLFECRIQA--DPAPTVIWSHSGV--Q---VK---E-------DKRHKFSIDKDGHSYFASLEIIDVTIED  183 (254)
Q Consensus       121 ~~~~~~g~~~~l~C~~~~--~~~~~~~W~~~~~--~---~~---~-------~~~~~~~~~~~~~~~~~~l~i~~~~~~d  183 (254)
                      ...+.+|++++|.|...+  .....+.|+|...  .   +.   .       ....++....+.......|+|.+++.+|
T Consensus         8 ~~~v~eG~svtl~C~~~~~~~~~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~Lti~~l~~~D   87 (113)
T d1smoa_           8 KYELKEGQTLDVKCDYTLEKFASSQKAWQIIRDGEMPKTLACTERPSKNSHPVQVGRIILEDYHDHGLLRVRMVNLQVED   87 (113)
T ss_dssp             EEECCTTCCEEEEEECCHHHHTTSCEEEEEECTTSCCEEEEECCSSCCSSCCEEETTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             cEEEccCCCEEEEEEeCCCCCCCCEEEEEECCCCCCCEEEEecCCCCceEcceECCeEEEEEECCCCEEEEEEccCCccc
Confidence            356678999999998653  2344688997321  1   10   0       0001222222222223479999999999


Q ss_pred             ceeEEEEEEcC
Q psy7036         184 AGKYKVTAKNE  194 (254)
Q Consensus       184 ~G~y~C~~~~~  194 (254)
                      +|.|.|.+...
T Consensus        88 sg~Y~Cav~~~   98 (113)
T d1smoa_          88 SGLYQCVIYQP   98 (113)
T ss_dssp             CEEEEEEECCT
T ss_pred             CceEEEEEECC
Confidence            99999988544

>d2ij0c1 b.1.1.1 (C:1-117) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.34  E-value=2.3e-06  Score=52.49  Aligned_cols=77  Identities=22%  Similarity=0.369  Sum_probs=49.7

Q ss_pred             CCCeeeecCCCeEEEEEEEeeCCCCeEEEEEC--CEec---------------ccCCcceEEEcCCCCceeeEEEEccCC
Q psy7036         118 KPSIRQEDDGKRLLFECRIQADPAPTVIWSHS--GVQV---------------KEDKRHKFSIDKDGHSYFASLEIIDVT  180 (254)
Q Consensus       118 ~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~--~~~~---------------~~~~~~~~~~~~~~~~~~~~l~i~~~~  180 (254)
                      .+..+.+.+|+.++|.|...+.....+.|||.  ++.+               ......++...... .....|.|.+++
T Consensus         7 ~P~~~~~~~G~~v~L~C~~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~f~~~~~~-~~~~~L~i~~~~   85 (118)
T d2ij0c1           7 HPSMVIVKSGTSVKIECRSLDTNIHTMFWYRQFPKQSLMLMATSHQGFNAIYEQGVVKDKFLINHAS-PTLSTLTVTSAH   85 (118)
T ss_dssp             ECSEEEECTTCCEEEEEEECSSCCSEEEEEEECTTSCEEEEEEEETTSCCEECTTCCTTTEEEEECS-SSEEEEEECSCC
T ss_pred             cCCeEEEcCCCCEEEEEEEcCCcccEEEEEEEcccccceeeeeccccccceeccccccccceeeccc-cccccccccccc
Confidence            34556788999999999976665667999983  1110               00011122222111 112479999999


Q ss_pred             CCCceeEEEEEEcCC
Q psy7036         181 IEDAGKYKVTAKNEL  195 (254)
Q Consensus       181 ~~d~G~y~C~~~~~~  195 (254)
                      .+|+|.|.|.+....
T Consensus        86 ~~Dsa~YyCa~~~~~  100 (118)
T d2ij0c1          86 PEDSGFYVCSALAGS  100 (118)
T ss_dssp             GGGCEEEEEEEECSS
T ss_pred             cccCceEEEEEecCC
Confidence            999999999986543

>d1qfoa_ b.1.1.1 (A:) N-terminal domain of sialoadhesin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialoadhesin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.34  E-value=1.2e-06  Score=53.78  Aligned_cols=77  Identities=23%  Similarity=0.277  Sum_probs=47.8

Q ss_pred             CCeeeecCCCeEEEEEEEeeC---C---CCeEEEEECCEe----c---------ccCCcceEEEcCCCCceeeEEEEccC
Q psy7036         119 PSIRQEDDGKRLLFECRIQAD---P---APTVIWSHSGVQ----V---------KEDKRHKFSIDKDGHSYFASLEIIDV  179 (254)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~---~---~~~~~W~~~~~~----~---------~~~~~~~~~~~~~~~~~~~~l~i~~~  179 (254)
                      |..+.+.+|..+.|.|.....   +   ...+.|++....    +         ......++....+.....++|.|.++
T Consensus         7 P~~v~~~~G~~V~l~C~f~~p~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v   86 (118)
T d1qfoa_           7 PKNVQGLSGSCLLIPCIFSYPADVPVSNGITAIWYYDYSGKRQVVIHSGDPKLVDKRFRGRAELMGNMDHKVCNLLLKDL   86 (118)
T ss_dssp             CSEEEEETTSCEEECCEEECCTTSCC--CCEEEEEESTTTTCEEEEESSCGGGSCTTTTTTEEECSCGGGTBCCEEECSC
T ss_pred             CCEEEEecCCcEEEEEEEeeccCCCCcceEEEEEEeeceeccceeeeeccccccccccCCCeEEEEeCcCCEEEEEECCC
Confidence            346778899999999997521   1   124567764211    1         11112233333322223457999999


Q ss_pred             CCCCceeEEEEEEcCC
Q psy7036         180 TIEDAGKYKVTAKNEL  195 (254)
Q Consensus       180 ~~~d~G~y~C~~~~~~  195 (254)
                      +.+|+|.|.|.+....
T Consensus        87 ~~~DsG~Y~C~v~~~~  102 (118)
T d1qfoa_          87 KPEDSGTYNFRFEISD  102 (118)
T ss_dssp             CGGGCEEEEEEEECC-
T ss_pred             ChhHCEEEEEEEEeCC
Confidence            9999999999997653

>d8faba1 b.1.1.1 (A:3-105) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=98.34  E-value=7.9e-07  Score=53.21  Aligned_cols=73  Identities=22%  Similarity=0.315  Sum_probs=46.2

Q ss_pred             CCeeeecCCCeEEEEEEEeeCCCCeEEEEECC--Eec---c-------cCCcceEEEcCCCCceeeEEEEccCCCCCcee
Q psy7036         119 PSIRQEDDGKRLLFECRIQADPAPTVIWSHSG--VQV---K-------EDKRHKFSIDKDGHSYFASLEIIDVTIEDAGK  186 (254)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~--~~~---~-------~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~  186 (254)
                      +..+.+.+|+.++|.|.........+.|||..  ...   .       .....++....+..  ...|.|.+++.+|+|.
T Consensus         5 p~sl~~~~G~svtl~C~~~~~~~~~~~WYrQ~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~L~I~~l~~~Dsa~   82 (103)
T d8faba1           5 PPSVSVSPGQTARITCSANALPNQYAYWYQQKPGRAPVMVIYKDTQRPSGIPQRFSSSTSGT--TVTLTISGVQAEDEAD   82 (103)
T ss_dssp             CSEEEECTTSCEEEEEECTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETT--EEEEEETTCCGGGCEE
T ss_pred             CCeEEECCCCCEEEEEEeCCCCCCCEEEEEccCCCceEEEeeeecccccccCCcEEECCCCC--ccCceEcCcchhHCce
Confidence            34677889999999998755444568999732  110   0       00111122211111  2489999999999999


Q ss_pred             EEEEEEc
Q psy7036         187 YKVTAKN  193 (254)
Q Consensus       187 y~C~~~~  193 (254)
                      |.|.+..
T Consensus        83 YyCA~~~   89 (103)
T d8faba1          83 YYCQAWD   89 (103)
T ss_dssp             EEEEEEE
T ss_pred             EEeeecC
Confidence            9997654

>d2esvd1 b.1.1.1 (D:4-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.33  E-value=3e-06  Score=51.28  Aligned_cols=74  Identities=15%  Similarity=0.254  Sum_probs=47.7

Q ss_pred             CCeeeecCCCeEEEEEEEeeCC-CCeEEEEEC--CEe---c-c------cCCcceEEEcCCCCceeeEEEEccCCCCCce
Q psy7036         119 PSIRQEDDGKRLLFECRIQADP-APTVIWSHS--GVQ---V-K------EDKRHKFSIDKDGHSYFASLEIIDVTIEDAG  185 (254)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~~-~~~~~W~~~--~~~---~-~------~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G  185 (254)
                      +..+.+.+|+.++|.|...... ...+.||+.  ++.   + .      .....++....+.  ....|.|.+++.+|+|
T Consensus         5 P~svsv~~G~~vtl~C~~s~~~~~~~l~WYrq~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~--~~~~L~I~~~~~~Dsa   82 (110)
T d2esvd1           5 PPSMDCAEGRAANLPCNHSTISGNEYVYWYRQIHSQGPQYIIHGLKNNETNEMASLIITEDR--KSSTLILPHATLRDTA   82 (110)
T ss_dssp             CSEEEEETTSCEEEEEECTTCCTTEEEEEEEECTTSCCEEEEEESSSCEECSSCEEEECTTC--SEEEEEESSCCGGGCE
T ss_pred             CCEEEECCCCCEEEEEEEcCCCCCCeEEEEEECCCCccEEeeeeeceecccccceeeecccC--CeeeehhcccccCCce
Confidence            3467788999999999865432 345889983  211   1 0      1112222232222  2357999999999999


Q ss_pred             eEEEEEEcC
Q psy7036         186 KYKVTAKNE  194 (254)
Q Consensus       186 ~y~C~~~~~  194 (254)
                      .|.|.+...
T Consensus        83 ~YyCa~~~~   91 (110)
T d2esvd1          83 VYYCIVVRS   91 (110)
T ss_dssp             EEEEEEEES
T ss_pred             EEEEEEeCC
Confidence            999988643

>d1i1ca1 b.1.1.2 (A:239-341) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.33  E-value=5.2e-07  Score=54.00  Aligned_cols=82  Identities=11%  Similarity=0.151  Sum_probs=51.3

Q ss_pred             EeCCCcee-ecCCCeEEEEEEEee-CC---CCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEE
Q psy7036          12 TQKPQLRQ-EDEGNRLIFECQLLC-NP---KPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKV   86 (254)
Q Consensus        12 ~~~~~~~~-v~~g~~v~l~C~~~~-~~---~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C   86 (254)
                      +..|.... ...+.+++|.|.+.+ .|   ...++|+++|..+............++.....+.|.|..-.....-.|+|
T Consensus         4 l~pPs~~~~~~~~~t~~l~Clv~~f~p~~~~v~v~W~~~g~~~~~~~~~~~~~~~~gtys~~S~L~v~~~~W~~g~~~tC   83 (103)
T d1i1ca1           4 IFPPKTKDVLGGGLTPKVTCVVVDISQNDPEVRFSWFIDDVEVHTAQTHAPEKQSNSTLRSVSELPIVERDWLNGKTFKC   83 (103)
T ss_dssp             EECCCHHHHTTSSSCCEEEEEEEEECTTCCCCEEEEEESSCEECCCEECCCEECTTSCEEEEEEEECCHHHHHTTCCEEE
T ss_pred             EECcChHHHhccCCCcEEEEEEEeeECCCCCEEEEEEECCccccCCEECCcEECCCCCEEEEEEEEECHHHhcCCCEEEE
Confidence            34454433 345778999999987 34   35789999998765543333333334434445566666554445557999


Q ss_pred             EEEcCCC
Q psy7036          87 KAKNKMG   93 (254)
Q Consensus        87 ~~~~~~~   93 (254)
                      .|.+...
T Consensus        84 ~V~H~~l   90 (103)
T d1i1ca1          84 KVNSGAF   90 (103)
T ss_dssp             EEECSSS
T ss_pred             EEEeCCC
Confidence            9997653

>d1c5db1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.33  E-value=6.1e-06  Score=49.32  Aligned_cols=72  Identities=14%  Similarity=0.270  Sum_probs=46.1

Q ss_pred             ceeecCCCeEEEEEEEeeCC--CCceEEEeC--CEE------e--------eeCCcceEEEeecCCcceEEEEEEeccCC
Q psy7036          17 LRQEDEGNRLIFECQLLCNP--KPDIVWFRG--ETQ------L--------SEDTRTVMKTTPIGTNKYLVALELDDVIE   78 (254)
Q Consensus        17 ~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~--~~~------~--------~~~~~~~~~~~~~~~~~~~~~l~i~~~~~   78 (254)
                      ...+.+|++++|+|.+.|..  ...+.|+|.  |+.      +        ...-+.++....+.. .-...|.|.+++.
T Consensus         9 ~~lvkPg~sl~LsC~~SG~~~~~~~~~W~RQ~PGkglewi~~i~~~~~~~y~~s~kgRftiS~D~s-~n~~~L~~~sL~~   87 (117)
T d1c5db1           9 PGLVQPSQTLSLTCTVSGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTS-KSQVFLKMNSLQT   87 (117)
T ss_dssp             CSEECTTSCEEEEEEECSSCTTTCCEEEEEECTTSCCEEEEEECTTCCEEECTTTSSSEEEEEETT-TTEEEEEECSCCG
T ss_pred             CceECCCCCeEEEEEEcCCCccCCceEcccCCCCcceeeeeccccccccccccccccceEEecccc-cceeecccccccc
Confidence            34689999999999998753  446889872  211      1        111122332222221 2233799999999


Q ss_pred             CCCeEEEEEEE
Q psy7036          79 TDAGLYKVKAK   89 (254)
Q Consensus        79 ~d~G~Y~C~~~   89 (254)
                      +|++.|.|...
T Consensus        88 eDtAvYYCAr~   98 (117)
T d1c5db1          88 EDTAIYFCTRE   98 (117)
T ss_dssp             GGCEEEEEEEC
T ss_pred             CcceEEEEecc
Confidence            99999999654

>d1fp5a1 b.1.1.2 (A:336-438) Immunoglobulin heavy chain epsilon constant domain 3, CH3-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 3, CH3-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.33  E-value=5.4e-07  Score=53.95  Aligned_cols=83  Identities=11%  Similarity=0.131  Sum_probs=54.1

Q ss_pred             eEeCCCceeecCCCeEEEEEEEeeC-CC---CceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEE
Q psy7036          11 FTQKPQLRQEDEGNRLIFECQLLCN-PK---PDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKV   86 (254)
Q Consensus        11 ~~~~~~~~~v~~g~~v~l~C~~~~~-~~---~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C   86 (254)
                      ++..|....+..+..++|.|.+.|. |.   ..+.|++++...............++.....+.|.|..-.......|+|
T Consensus         4 ~l~pPs~~~l~~~~~~tL~C~v~gf~P~~~~v~~~W~~~~~~~~~~~~~~~~~~~~gt~s~~S~L~v~~~~w~~g~~~tC   83 (103)
T d1fp5a1           4 YLSRPSPFDLFIRKSPTITCLVVDLAPSKGTVNLTWSRASGKPVNHSTRKEEKQRNGTLTVTSTLPVGTRDWIEGETYQC   83 (103)
T ss_dssp             EEECCCHHHHHTTCCCEEEEEEEESSCCSSCCEEEEEETTCCCCCCCEEEEEEETTTEEEEEEEEECCHHHHHTTCCEEE
T ss_pred             EEeCcCHHHHhhCCCeEEEEEEEeeECCCceEEEEEcCCCceecccEEcccEECCCCCEEEEEEEEEcHHHhCCCCeEEE
Confidence            4556666667778899999999883 43   3667888887655433333333333444455567766555555678999


Q ss_pred             EEEcCCC
Q psy7036          87 KAKNKMG   93 (254)
Q Consensus        87 ~~~~~~~   93 (254)
                      .+.+...
T Consensus        84 ~V~H~~l   90 (103)
T d1fp5a1          84 RVTHPHL   90 (103)
T ss_dssp             EEECSSC
T ss_pred             EEEECCC
Confidence            9997653

>d1l6xa1 b.1.1.2 (A:237-341) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.33  E-value=8e-07  Score=53.42  Aligned_cols=76  Identities=12%  Similarity=0.081  Sum_probs=51.8

Q ss_pred             eecCCCeEEEEEEEee-CC---CCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcCCCc
Q psy7036          19 QEDEGNRLIFECQLLC-NP---KPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGE   94 (254)
Q Consensus        19 ~v~~g~~v~l~C~~~~-~~---~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~   94 (254)
                      .+..++.++|.|.+.+ .|   ...++|.+++..+............++.....+.|.|..-.......|+|.|.+....
T Consensus        14 ~~~~~~~~~L~C~~~gf~P~~~~v~~~W~~~~~~~~~~~~~~~~~~~~gtys~~S~L~v~~~~W~~g~~ytC~V~H~~l~   93 (105)
T d1l6xa1          14 TLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALP   93 (105)
T ss_dssp             HHCTTSCCEEEEEEEEECSSSCCCEEEEEETTEEECCCEECCCEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECTTSS
T ss_pred             hhccCCceEEEEEEEEEeCCCCeEEEEEeeCCeECCCcEECCcEECCCCcEEEEEEEEEcHHHcCCCCEEEEEEEeCCCC
Confidence            3557889999999987 34   2568899999987654433333344444455667777666555566899999976543

>d1hdma1 b.1.1.2 (A:94-196) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=98.32  E-value=8.8e-06  Score=48.26  Aligned_cols=78  Identities=19%  Similarity=0.160  Sum_probs=50.8

Q ss_pred             cCCCeEEEEEEEeeCCCC--eEEEEECCEecccCCcceEEEcCCC-CceeeEEEEccCCCCCceeEEEEEEcCCCcceEE
Q psy7036         125 DDGKRLLFECRIQADPAP--TVIWSHSGVQVKEDKRHKFSIDKDG-HSYFASLEIIDVTIEDAGKYKVTAKNELGESNAT  201 (254)
Q Consensus       125 ~~g~~~~l~C~~~~~~~~--~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~  201 (254)
                      ..|+..+|.|.+.++.+.  .+.|.+||..+............++ +...+.|.|..   ++...|+|.+.+........
T Consensus        16 e~~~~~tL~C~v~gF~P~~i~V~W~~ng~~~~~~~~~~~~~~~dgty~~~S~L~v~~---~~~~~ytC~V~H~~l~~p~~   92 (103)
T d1hdma1          16 EFGKPNTLVCFVSNLFPPMLTVNWHDHSVPVEGFGPTFVSAVDGLSFQAFSYLNFTP---EPSDIFSCIVTHEPDRYTAI   92 (103)
T ss_dssp             CTTSCEEEEEEEEEEBSSCEEEEEEETTEECSSCCCEEEEEETTTEEEEEEEEEECC---CTTCCEEEEEEETTTTEEEE
T ss_pred             hcCCCeEEEEEEeeEECCCCEEEEEECCeecCCcEeceEEeCCCCcEEEEEEEEEec---CCCCEEEEEEEeCCCCCCEE
Confidence            347777999999996543  6899999998765444334344444 33445666653   34457999999976555555


Q ss_pred             EEEE
Q psy7036         202 ISLN  205 (254)
Q Consensus       202 ~~~~  205 (254)
                      ..+.
T Consensus        93 ~~w~   96 (103)
T d1hdma1          93 AYWV   96 (103)
T ss_dssp             EEEC
T ss_pred             EEec
Confidence            4443

>d1hyrc1 b.1.1.2 (C:181-274) Class I MHC homolog, alpha-3 domain {Human (Homo sapiens), Mic-a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC homolog, alpha-3 domain
species: Human (Homo sapiens), Mic-a [TaxId: 9606]

Probab=98.31  E-value=3.3e-06  Score=49.43  Aligned_cols=79  Identities=15%  Similarity=0.215  Sum_probs=47.1

Q ss_pred             CCeeEeCCCceeecCCCeEEEEEEEee-CC-CCceEEEeCCEEeeeCCcce--EEEeecCCcceEEEEEEeccCCCCCeE
Q psy7036           8 APSFTQKPQLRQEDEGNRLIFECQLLC-NP-KPDIVWFRGETQLSEDTRTV--MKTTPIGTNKYLVALELDDVIETDAGL   83 (254)
Q Consensus         8 ~p~~~~~~~~~~v~~g~~v~l~C~~~~-~~-~~~v~W~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~i~~~~~~d~G~   83 (254)
                      +|.+.+....   ..++.++|.|.+.| .| ...|+|+++|..+.......  .....++.....+.|.+.   ..+...
T Consensus         3 pP~V~v~~~~---~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~~~~ty~~~s~l~v~---~~~~~~   76 (94)
T d1hyrc1           3 PPMVNVTRSE---ASEGNITVTCRASGFYPWNITLSWRQDGVSLSHDTQQWGDVLPDGNGTYQTWVATRIC---QGEEQR   76 (94)
T ss_dssp             CCEEEEEECC---CSSSEEEEEEEEEEEBSSCCEEEEEETTEECCSTTSEECCCEECSSSCEEEEEEEEEE---TTCGGG
T ss_pred             CCEEEEEecC---CCCCCEEEEEEEEEEECCCcEEEEeECCeEcCCCeEEcCceEECCCCcEEEEEEEEEc---CCCCCE
Confidence            5665543222   24567999999988 34 46899999999886543221  112222222233344444   344557


Q ss_pred             EEEEEEcCC
Q psy7036          84 YKVKAKNKM   92 (254)
Q Consensus        84 Y~C~~~~~~   92 (254)
                      |+|.+.+..
T Consensus        77 ytC~V~H~~   85 (94)
T d1hyrc1          77 FTCYMEHSG   85 (94)
T ss_dssp             EEEEEEETT
T ss_pred             EEEEEEECC
Confidence            999998754

>d1nlbh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.31  E-value=1.1e-05  Score=48.35  Aligned_cols=74  Identities=9%  Similarity=0.139  Sum_probs=46.2

Q ss_pred             CCceeecCCCeEEEEEEEeeCC--CCceEEEeC--CE------Eeee---------CCcceEEEeecCCcceEEEEEEec
Q psy7036          15 PQLRQEDEGNRLIFECQLLCNP--KPDIVWFRG--ET------QLSE---------DTRTVMKTTPIGTNKYLVALELDD   75 (254)
Q Consensus        15 ~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~--~~------~~~~---------~~~~~~~~~~~~~~~~~~~l~i~~   75 (254)
                      .....+.+|++++|+|.+.|..  ...+.|+|.  |+      .+..         .-+.++....+. ......|.+.+
T Consensus         7 sg~~~~kPG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwvg~i~~~~~~~~ya~~~kgRftisrD~-s~~tvyL~~~~   85 (118)
T d1nlbh1           7 SGPELKKPGETVKISCKASGYTFTDFSMHWVNQAPGKGLNWMGWVNTETGEPTYADDFKGRFAFSLET-SASTAYLQINS   85 (118)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGSSSEEEEEEG-GGTEEEEEECS
T ss_pred             ECCceECCCCCEEEEEEEcCCCCCCCceeccccCCCccceeeeecCcccccchhhhheeeeeEEEecC-CceeEEeeeee
Confidence            3345689999999999998743  456889873  21      1111         111122222211 12233699999


Q ss_pred             cCCCCCeEEEEEEE
Q psy7036          76 VIETDAGLYKVKAK   89 (254)
Q Consensus        76 ~~~~d~G~Y~C~~~   89 (254)
                      ++.+|++.|.|...
T Consensus        86 L~~eDtAvYYCAr~   99 (118)
T d1nlbh1          86 LKNEDTATYFCARF   99 (118)
T ss_dssp             CCGGGCEEEEEEEE
T ss_pred             cccCcceEEEEeee
Confidence            99999999999643

>d2jelh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.31  E-value=7.9e-06  Score=48.95  Aligned_cols=75  Identities=12%  Similarity=0.154  Sum_probs=46.6

Q ss_pred             CCCceeecCCCeEEEEEEEeeCC--CCceEEEeC--CE------Eee---------eCCcceEEEeecCCcceEEEEEEe
Q psy7036          14 KPQLRQEDEGNRLIFECQLLCNP--KPDIVWFRG--ET------QLS---------EDTRTVMKTTPIGTNKYLVALELD   74 (254)
Q Consensus        14 ~~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~--~~------~~~---------~~~~~~~~~~~~~~~~~~~~l~i~   74 (254)
                      ++....+.+|++++|+|.+.|..  ...+.|+|.  |+      .+.         ..-+.++....+ .......|.|.
T Consensus         6 esg~~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglewlg~i~~~~~~~~y~~~~kgR~tiS~D-~s~~t~~L~~~   84 (118)
T d2jelh1           6 QSGPELVRPGVSVKISCKGSGYTFTTYAMHWVKQSHAKSLEWIGLISTYSGYTNYNQKFKGKATMTVD-KSSSTAYMELA   84 (118)
T ss_dssp             ECCCEEECTTCCEEEEEEEESSCGGGSEEEEEEECSSSSEEEEEEECTTTCCEEECGGGBTTEEEEEE-GGGTEEEEEEC
T ss_pred             eECCceECCCCCEEEEEEEcCCCCCCCceecceeCCCcccccccccCCcCCcchhhhhhcccEEEecc-cCcceEeeccc
Confidence            34455789999999999998754  346888872  21      111         110112222221 11223369999


Q ss_pred             ccCCCCCeEEEEEEE
Q psy7036          75 DVIETDAGLYKVKAK   89 (254)
Q Consensus        75 ~~~~~d~G~Y~C~~~   89 (254)
                      +++.+|++.|.|...
T Consensus        85 sL~~eDTAvYYCAr~   99 (118)
T d2jelh1          85 RLTSEDSAIYYCARV   99 (118)
T ss_dssp             SCCGGGCEEEEEEEE
T ss_pred             ccccCcceeeeEEEe
Confidence            999999999999543

>d1t7va1 b.1.1.2 (A:184-277) Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.31  E-value=3.7e-06  Score=49.22  Aligned_cols=71  Identities=13%  Similarity=0.241  Sum_probs=45.1

Q ss_pred             CCCeEEEEEEEeeCCCC--eEEEEECCEecccCCcceEEEcCCCC-ceeeEEEEccCCCCCceeEEEEEEcCCCcce
Q psy7036         126 DGKRLLFECRIQADPAP--TVIWSHSGVQVKEDKRHKFSIDKDGH-SYFASLEIIDVTIEDAGKYKVTAKNELGESN  199 (254)
Q Consensus       126 ~g~~~~l~C~~~~~~~~--~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~  199 (254)
                      .|+.++|.|.+.|+.+.  .+.|.+||..+............++. ...+.|.+   ...+...|+|.+.+......
T Consensus        14 ~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~~~~t~~~~s~l~~---~~~~~~~ytC~V~H~sl~~p   87 (94)
T d1t7va1          14 PGEKKKLKCLAYDFYPGKIDVHWTRAGEVQEPELRGDVLHNGNGTYQSWVVVAV---PPQDTAPYSCHVQHSSLAQP   87 (94)
T ss_dssp             TTSCEEEEEEEEEEBSSCEEEEEEETTEECCCSEEEEEEETTTTEEEEEEEEEE---CTTCCSCEEEEEEETTCSSC
T ss_pred             CCCCEEEEEEEEeEECCCCEEEEEECCEECCCcEEeeeecCCCCeEEEEEEeEe---CCCCCCEEEEEEEECCCCCC
Confidence            47789999999996543  69999999987644333333333332 22233443   44555689999998755443

>d3frua1 b.1.1.2 (A:179-269) Fc (IgG) receptor, alpha-3 domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Fc (IgG) receptor, alpha-3 domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.30  E-value=2.8e-06  Score=49.35  Aligned_cols=69  Identities=13%  Similarity=0.156  Sum_probs=44.6

Q ss_pred             CCeEEEEEEEeeCCC--CeEEEEECCEecccCCcceEEEcCCCC-ceeeEEEEccCCCCCceeEEEEEEcCCCcce
Q psy7036         127 GKRLLFECRIQADPA--PTVIWSHSGVQVKEDKRHKFSIDKDGH-SYFASLEIIDVTIEDAGKYKVTAKNELGESN  199 (254)
Q Consensus       127 g~~~~l~C~~~~~~~--~~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~  199 (254)
                      +..++|.|.+.|+.+  ..+.|.+||..+.... .......++. ...+.|.+..   .+...|+|.+.+......
T Consensus        15 ~~~~~L~C~~~gF~P~~i~v~W~~ng~~~~~~~-~~~~~~~dgty~~~S~l~v~~---~~~~~ytC~V~H~sL~~p   86 (91)
T d3frua1          15 SGSSVLTCAAFSFYPPELKFRFLRNGLASGSGN-CSTGPNGDGSFHAWSLLEVKR---GDEHHYQCQVEHEGLAQP   86 (91)
T ss_dssp             TTEEEEEEEEEEEBSSCCEEEEEETTEECCCCE-EEEEECSSSCEEEEEEEEEET---TCGGGEEEEEECTTSSSC
T ss_pred             CCCEEEEEEEEeEECCCCEEEEEECCEeCCccC-ccceecCCCCEeEEEEEEECC---CCCCEEEEEEEeCCCCCC
Confidence            457899999999643  3699999998875432 2233333332 3345666643   445689999998654443

>d1bwwa_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=98.30  E-value=2.2e-06  Score=51.79  Aligned_cols=74  Identities=19%  Similarity=0.261  Sum_probs=48.0

Q ss_pred             CCCeeeecCCCeEEEEEEEeeCCCCeEEEEECC--E---ecc-------cCCcceEEEcCCCCceeeEEEEccCCCCCce
Q psy7036         118 KPSIRQEDDGKRLLFECRIQADPAPTVIWSHSG--V---QVK-------EDKRHKFSIDKDGHSYFASLEIIDVTIEDAG  185 (254)
Q Consensus       118 ~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~--~---~~~-------~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G  185 (254)
                      .+..+.+.+|+.++|.|...+.....+.||+..  +   .+.       .....++....++.  ...|.|.+++.+|+|
T Consensus         9 sP~~l~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~fs~~~~~~--~~~L~I~~l~~~Dsa   86 (109)
T d1bwwa_           9 SPSSLSASVGDRVTITCQASQDIIKYLNWYQQKPGKAPKLLIYEASNLQAGVPSRFSGSGSGT--DYTFTISSLQPEDIA   86 (109)
T ss_dssp             ECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETT--EEEEEESSCCGGGCE
T ss_pred             eCCEEEECCCCCEEEEEEecCCCCCcceEeeeccCCCCEEEEEecccCCCCCCCCEEeeCCCC--EeEEEEeeceeCcCc
Confidence            345677889999999999876555568899731  1   110       11111222222222  237999999999999


Q ss_pred             eEEEEEEc
Q psy7036         186 KYKVTAKN  193 (254)
Q Consensus       186 ~y~C~~~~  193 (254)
                      .|.|.+..
T Consensus        87 ~YyCA~~~   94 (109)
T d1bwwa_          87 TYYCQQYQ   94 (109)
T ss_dssp             EEEEEECS
T ss_pred             eEEEeecC
Confidence            99998653

>d1qnzh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.29  E-value=2.1e-06  Score=51.94  Aligned_cols=73  Identities=15%  Similarity=0.212  Sum_probs=45.7

Q ss_pred             ceeecCCCeEEEEEEEeeC--CCCceEEEeC--CEE---e---ee---------CCcceEEEeecCCcceEEEEEEeccC
Q psy7036          17 LRQEDEGNRLIFECQLLCN--PKPDIVWFRG--ETQ---L---SE---------DTRTVMKTTPIGTNKYLVALELDDVI   77 (254)
Q Consensus        17 ~~~v~~g~~v~l~C~~~~~--~~~~v~W~~~--~~~---~---~~---------~~~~~~~~~~~~~~~~~~~l~i~~~~   77 (254)
                      ...+.+|++|+|+|.+.|.  ....+.|+|.  |+.   +   ..         .-+.++....+.. .....|.|.+++
T Consensus         9 ~~~~kpG~Sv~LsC~~SG~s~~~y~~~WyRQ~PGkgle~l~~i~~~~~~~~y~~~~~gR~tis~d~s-~~~~~L~i~~L~   87 (119)
T d1qnzh_           9 AELVKPGASVKMSCKASGYTFTTYPIEWMKQNHGKSLEWIGNFHPYSDDTNYNEKFKGKAKLTVEKS-SSTVYLEFSRLT   87 (119)
T ss_dssp             CCEECTTEEEEEEEEEETCCSSSSCEEEEEEETTSCCEEEEEEETTTTEECCCTTTTTTEEEEEETT-TTEEEEEEEEEC
T ss_pred             CceECCCCCEEEEEEEeccCCCCCCcceeeecCCCcceEeeccCCcccccchhhhhcccceeecccc-cceeeeeecccC
Confidence            3478899999999999874  3446899873  211   1   10         1111222222221 122369999999


Q ss_pred             CCCCeEEEEEEEc
Q psy7036          78 ETDAGLYKVKAKN   90 (254)
Q Consensus        78 ~~d~G~Y~C~~~~   90 (254)
                      .+|++.|.|....
T Consensus        88 ~eDsAvYYCA~~~  100 (119)
T d1qnzh_          88 SDDSAVYYCAIHY  100 (119)
T ss_dssp             GGGCEEEEEEECS
T ss_pred             ccceeEEEEEEec
Confidence            9999999997643

>d1kxvc_ b.1.1.1 (C:) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=98.28  E-value=6.8e-06  Score=49.48  Aligned_cols=72  Identities=18%  Similarity=0.306  Sum_probs=46.2

Q ss_pred             eeecCCCeEEEEEEEeeCC--CCceEEEeC--CE---Ee---e--------eCCcceEEEeecCCcceEEEEEEeccCCC
Q psy7036          18 RQEDEGNRLIFECQLLCNP--KPDIVWFRG--ET---QL---S--------EDTRTVMKTTPIGTNKYLVALELDDVIET   79 (254)
Q Consensus        18 ~~v~~g~~v~l~C~~~~~~--~~~v~W~~~--~~---~~---~--------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~   79 (254)
                      ..+.+|++++|+|.+.|..  ...+.|+|.  |+   -+   .        ..-+.++....+. ......|.|.+++.+
T Consensus         9 ~~vkPg~sl~LsC~~SG~~~s~y~~~W~RQ~pGkglewl~~i~~~g~~~y~~~~kgR~tiS~D~-s~~~~~L~i~~L~~e   87 (119)
T d1kxvc_           9 GTVPAGGSLRLSCAASGNTLCTYDMSWYRRAPGKGRDFVSGIDNDGTTTYVDSVAGRFTISQGN-AKNTAYLQMDSLKPD   87 (119)
T ss_dssp             EEECTTCCEEEEEEEESCTTCCEEEEEEEECTTSCEEEEEEECTTCCEEECGGGBTTEEEEECS-STTEEEEEECSCCGG
T ss_pred             ceECCCCCeEEEEEEcCCCccCCceeeeeeCCCCcceeeeecccccchhhhhhhhcceEEeccc-CCcceecccccCCcC
Confidence            4688999999999998753  445789873  11   11   1        1111123222222 222347999999999


Q ss_pred             CCeEEEEEEEc
Q psy7036          80 DAGLYKVKAKN   90 (254)
Q Consensus        80 d~G~Y~C~~~~   90 (254)
                      |++.|.|....
T Consensus        88 DtA~YYCAr~~   98 (119)
T d1kxvc_          88 DTAMYYCKPSL   98 (119)
T ss_dssp             GCEEEEEEEEE
T ss_pred             CcceEeeeecc
Confidence            99999997653

>d1ogad1 b.1.1.1 (D:3-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.28  E-value=2.6e-06  Score=51.94  Aligned_cols=74  Identities=20%  Similarity=0.298  Sum_probs=47.8

Q ss_pred             CCeeeecCCCeEEEEEEEeeCCCCeEEEEECC--Ee--c----------ccCCcceEEEcCCCCceeeEEEEccCCCCCc
Q psy7036         119 PSIRQEDDGKRLLFECRIQADPAPTVIWSHSG--VQ--V----------KEDKRHKFSIDKDGHSYFASLEIIDVTIEDA  184 (254)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~--~~--~----------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~  184 (254)
                      +..+.+.+|+.++|.|...+. ...+.||+..  ..  +          .......+.....  .....|.|.+++.+|+
T Consensus         7 P~~~~~~~G~svtl~C~~s~~-~~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~L~I~~~~~~Ds   83 (115)
T d1ogad1           7 PQFLSIQEGENLTVYCNSSSV-FSSLQWYRQEPGEGPVLLVTVVTGGEVKKLKRLTFQFGDA--RKDSSLHITAAQPGDT   83 (115)
T ss_dssp             CSEEEEETTCCEEEEEECSSC-CSCEEEEEECTTSCCEEEEEECSTTCEEEETTEEEEECTT--SSEEEEEESSCCGGGC
T ss_pred             CCeEEECCCCCEEEEEEECCC-CceEEEEecCCCCceeeeeeeeecccceeecccccccccc--cceeeeeecCCCccce
Confidence            456778899999999997543 3368999831  11  0          0111122222222  2235899999999999


Q ss_pred             eeEEEEEEcCC
Q psy7036         185 GKYKVTAKNEL  195 (254)
Q Consensus       185 G~y~C~~~~~~  195 (254)
                      |.|.|.+....
T Consensus        84 a~YyCa~~~~~   94 (115)
T d1ogad1          84 GLYLCAGAGSQ   94 (115)
T ss_dssp             EEEEEEEECTT
T ss_pred             eeEcccccCCC
Confidence            99999876443

>d1rhhb1 b.1.1.1 (B:3-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=98.28  E-value=6.5e-06  Score=50.23  Aligned_cols=77  Identities=13%  Similarity=0.189  Sum_probs=48.7

Q ss_pred             eCCCceeecCCCeEEEEEEEeeCC--CCceEEEeC--CEE------eee---------CCcceEEEeecCCcceEEEEEE
Q psy7036          13 QKPQLRQEDEGNRLIFECQLLCNP--KPDIVWFRG--ETQ------LSE---------DTRTVMKTTPIGTNKYLVALEL   73 (254)
Q Consensus        13 ~~~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~--~~~------~~~---------~~~~~~~~~~~~~~~~~~~l~i   73 (254)
                      .++....+.+|++++|+|.+.|..  ...+.|+|.  |+.      +..         .-+.++....+... -...|.+
T Consensus         4 ~esg~~~~kPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewig~i~~~~g~~~y~~~~kgR~tis~D~s~-~tv~L~~   82 (130)
T d1rhhb1           4 EQSGAEVKKPGSSVQVSCKASGGTFSMYGFNWVRQAPGHGLEWMGGIIPIFGTSNYAQKFRGRVTFTADQAT-STAYMEL   82 (130)
T ss_dssp             EECCCEEECTTCCEEEEEEETTSCCTTCEEEEEEECTTSCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTT-TEEEEEE
T ss_pred             eccCCceECCCCCeEEEEEEeCCCccCCCcceEEeCCccCcEEEeecCCcccccccccceeeeeEEeccCCc-cEEEEEe
Confidence            444556789999999999998743  446888872  211      111         00112222222222 2346999


Q ss_pred             eccCCCCCeEEEEEEEc
Q psy7036          74 DDVIETDAGLYKVKAKN   90 (254)
Q Consensus        74 ~~~~~~d~G~Y~C~~~~   90 (254)
                      .+++.+|++.|.|....
T Consensus        83 ~~L~~eDtAvYyCAr~~   99 (130)
T d1rhhb1          83 TNLRSDDTAVYYCARDF   99 (130)
T ss_dssp             CSCCGGGCEEEEEEEEC
T ss_pred             eccCCCCcEEEEEEeec
Confidence            99999999999997653

>d1pg7x1 b.1.1.1 (X:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.27  E-value=7.1e-06  Score=49.59  Aligned_cols=74  Identities=11%  Similarity=0.145  Sum_probs=46.5

Q ss_pred             CCceeecCCCeEEEEEEEeeCC--CCceEEEeC--CEE------eeeC---------CcceEEEeecCCcceEEEEEEec
Q psy7036          15 PQLRQEDEGNRLIFECQLLCNP--KPDIVWFRG--ETQ------LSED---------TRTVMKTTPIGTNKYLVALELDD   75 (254)
Q Consensus        15 ~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~--~~~------~~~~---------~~~~~~~~~~~~~~~~~~l~i~~   75 (254)
                      +....+.+|++++|+|.+.|..  ...+.|+|.  |+.      +...         -..++....+.. .-...|.|.+
T Consensus         7 sg~~~vkpG~sl~LsC~~SG~s~~~~~~~W~RQ~PGk~lewl~~i~~~~~~~~y~~~~kgR~tis~d~s-~n~v~L~i~~   85 (120)
T d1pg7x1           7 SGPELVKPGASVKISCKASGYSFTGHLLNWVKQSHGKNLEWIGLVHPHNGAITYNQKFKDKATLTVDRS-STTAYIELVR   85 (120)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETT-TTEEEEEECS
T ss_pred             ECCcEECCCCCEEEEEEEccccCCCCCcceeeecCCCceEEeeecCccccchhhhHHhhhcceeeeccC-cceEEccccc
Confidence            3345789999999999998743  445889872  221      1100         011222222221 2233699999


Q ss_pred             cCCCCCeEEEEEEE
Q psy7036          76 VIETDAGLYKVKAK   89 (254)
Q Consensus        76 ~~~~d~G~Y~C~~~   89 (254)
                      ++.+|++.|.|...
T Consensus        86 l~~eDtA~YYCAr~   99 (120)
T d1pg7x1          86 LTSNDSAVYYCARE   99 (120)
T ss_dssp             CCGGGCEEEEEEEE
T ss_pred             cCCCcceEEEeeec
Confidence            99999999999865

>d2gsia1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=98.27  E-value=4.2e-06  Score=50.61  Aligned_cols=74  Identities=20%  Similarity=0.239  Sum_probs=46.1

Q ss_pred             CCCeeeecCCCeEEEEEEEeeCC----CCeEEEEEC--CEec----c------cCCcceEEEcCCCCceeeEEEEccCCC
Q psy7036         118 KPSIRQEDDGKRLLFECRIQADP----APTVIWSHS--GVQV----K------EDKRHKFSIDKDGHSYFASLEIIDVTI  181 (254)
Q Consensus       118 ~~~~~~~~~g~~~~l~C~~~~~~----~~~~~W~~~--~~~~----~------~~~~~~~~~~~~~~~~~~~l~i~~~~~  181 (254)
                      .+..+.+.+|+.++|.|......    ...+.||+.  +...    .      .....++.....+.  ...|.|.+++.
T Consensus         7 sP~s~s~~~G~svtL~C~~s~~~~~~~~~~i~WYrQ~pg~~~~~li~~~~~~~~g~~~rfs~~~~~~--~~~L~I~~~~~   84 (111)
T d2gsia1           7 SPASLAVSLGQPATISCGASKSVRTSGYSYMDWNQQKPGQPPRRLIYLVSNLESGVPARFSGSGSGT--DFTLNIHPVEE   84 (111)
T ss_dssp             ECSEEEEETTSCEEEEEEESSCCCCSSSCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETT--EEEEEESSCCG
T ss_pred             eCCEEEECCCCCEEEEEEECCCCccCCccceEEEEECCCCccEEEEEccCccCCCcCCcEEEecCCC--chhcccccccc
Confidence            34567788999999999875421    224899984  1111    0      01111222222222  24799999999


Q ss_pred             CCceeEEEEEEc
Q psy7036         182 EDAGKYKVTAKN  193 (254)
Q Consensus       182 ~d~G~y~C~~~~  193 (254)
                      +|++.|.|.+..
T Consensus        85 ~DsA~YyCa~~~   96 (111)
T d2gsia1          85 EDAATYYCSHIR   96 (111)
T ss_dssp             GGCEEEEEEECS
T ss_pred             cCCceEEEEECC
Confidence            999999997654

>d1mfah1 b.1.1.1 (H:251-367) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.27  E-value=5.4e-06  Score=49.72  Aligned_cols=75  Identities=15%  Similarity=0.217  Sum_probs=47.0

Q ss_pred             CCCceeecCCCeEEEEEEEeeCC--CCceEEEeC--CEEe------e---------eCCcceEEEeecCCcceEEEEEEe
Q psy7036          14 KPQLRQEDEGNRLIFECQLLCNP--KPDIVWFRG--ETQL------S---------EDTRTVMKTTPIGTNKYLVALELD   74 (254)
Q Consensus        14 ~~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~--~~~~------~---------~~~~~~~~~~~~~~~~~~~~l~i~   74 (254)
                      ++....+.+|++++|+|.+.|..  ...+.|+|.  |+-+      .         ..-+.++....+. ......|.|.
T Consensus         6 qsg~~~~kPG~sl~LsC~~SG~s~s~~~~~WvRQ~PGkglEwl~~i~~~~~~~~ya~~~~~R~t~s~D~-s~~~~~L~i~   84 (117)
T d1mfah1           6 QSGTVVARPGASVKMSCKASGYTFTNYWMHWIKQRPGQGLEWIGAIYPGNSATFYNHKFRAKTKLTAVT-STTTAYMELS   84 (117)
T ss_dssp             ECCCEEECTTCCEEEEEEEESSCGGGSEEEEEEEETTTEEEEEEEEETTTTEEEECTTTTTTEEEEEET-TTTEEEEEEC
T ss_pred             eECCceECCCCCEEEEEEEcccCCCCCceEeeeeCCCCcceeeEccCcccccccccccceeeEEEEccc-CccEeEeeec
Confidence            44456789999999999998743  456788872  2211      1         1111122222221 1223369999


Q ss_pred             ccCCCCCeEEEEEEE
Q psy7036          75 DVIETDAGLYKVKAK   89 (254)
Q Consensus        75 ~~~~~d~G~Y~C~~~   89 (254)
                      +++.+|++.|.|...
T Consensus        85 ~L~~eDtAvYYCAr~   99 (117)
T d1mfah1          85 SLTSEDSAVYYCTRG   99 (117)
T ss_dssp             SCCGGGCEEEEEEEE
T ss_pred             ccCCCcceEEEEecc
Confidence            999999999999653

>d1f3rb2 b.1.1.1 (B:139-257) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.27  E-value=1.8e-06  Score=52.90  Aligned_cols=73  Identities=21%  Similarity=0.288  Sum_probs=46.7

Q ss_pred             CCeeeecCCCeEEEEEEEeeCCCCeEEEEECC--E---ecc-------cCCcceEEEcCCCCceeeEEEEccCCCCCcee
Q psy7036         119 PSIRQEDDGKRLLFECRIQADPAPTVIWSHSG--V---QVK-------EDKRHKFSIDKDGHSYFASLEIIDVTIEDAGK  186 (254)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~--~---~~~-------~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~  186 (254)
                      +..+.+.+|+.++|.|.........+.||+..  .   .+.       .....++.....+.  ...|.|.+++.+|+|.
T Consensus         8 P~sv~~~~G~svtl~C~~s~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~fs~~~~~~--~~~L~I~~~~~~Dsav   85 (119)
T d1f3rb2           8 PSLLSASVGDRVTLSCKGSQNINNYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGSGT--DYTLTISSLQPEDVAT   85 (119)
T ss_dssp             TSEECCCTTCCEEEEEECSSCCBTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEEBT--EEEEEECSCCGGGCSE
T ss_pred             CCEEEECCCCCEEEEEEeCCCCcceeEEeeeecccccEEEEEeeccccCceeeeecccCCCC--EEEEEcccCccCCCeE
Confidence            45667888999999998765444568999842  1   111       01111122111111  2479999999999999


Q ss_pred             EEEEEEc
Q psy7036         187 YKVTAKN  193 (254)
Q Consensus       187 y~C~~~~  193 (254)
                      |.|.+..
T Consensus        86 YyCa~~~   92 (119)
T d1f3rb2          86 YFCYQYN   92 (119)
T ss_dssp             EEEEEES
T ss_pred             EEeeccC
Confidence            9998654

>d1hxma1 b.1.1.1 (A:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=98.27  E-value=3.5e-06  Score=51.76  Aligned_cols=77  Identities=17%  Similarity=0.263  Sum_probs=48.5

Q ss_pred             CCCeeeecCCCeEEEEEEEeeCC--CCeEEEEEC--CEec----------ccCCcceEEEcCCCCceeeEEEEccCCCCC
Q psy7036         118 KPSIRQEDDGKRLLFECRIQADP--APTVIWSHS--GVQV----------KEDKRHKFSIDKDGHSYFASLEIIDVTIED  183 (254)
Q Consensus       118 ~~~~~~~~~g~~~~l~C~~~~~~--~~~~~W~~~--~~~~----------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d  183 (254)
                      .+..+.+.+|+.++|.|...+..  ...+.||+.  |+.+          ......++....+.....+.|.|.+++.+|
T Consensus         7 ~~~sv~v~~G~~vtL~C~~s~~~~~~~~~~WyrQ~pg~~~~~l~~~~~~~~~~~~~r~~~s~~~~~~~~~L~i~~~~~~D   86 (120)
T d1hxma1           7 EHQTVPVSIGVPATLRCSMKGEAIGNYYINWYRKTQGNTMTFIYREKDIYGPGFKDNFQGDIDIAKNLAVLKILAPSERD   86 (120)
T ss_dssp             SCSEEEEETTCCEEEEEEECSSCGGGSEEEEEEEESSSCSEEEEETTTEECTTTTTTEEEEEEGGGTEEEEEESSCCGGG
T ss_pred             cCCCEEECCCCCEEEEEEEeccCccCCcCeEEEccccccceeeeccccceeecccccceeeccccccceecccccccccC
Confidence            44566788999999999987643  346899973  1111          011111222221111123589999999999


Q ss_pred             ceeEEEEEEcC
Q psy7036         184 AGKYKVTAKNE  194 (254)
Q Consensus       184 ~G~y~C~~~~~  194 (254)
                      +|.|.|.....
T Consensus        87 sa~YyCA~~~~   97 (120)
T d1hxma1          87 EGSYYCACDTL   97 (120)
T ss_dssp             CEEEEEEEECC
T ss_pred             CceeecCcccC
Confidence            99999987653

>d1yqvl1 b.1.1.1 (L:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.26  E-value=3.2e-06  Score=50.54  Aligned_cols=72  Identities=21%  Similarity=0.324  Sum_probs=44.7

Q ss_pred             CCCeeeecCCCeEEEEEEEeeCCCCeEEEEECC--Ee---c-------ccCCcceEEEcCCCCceeeEEEEccCCCCCce
Q psy7036         118 KPSIRQEDDGKRLLFECRIQADPAPTVIWSHSG--VQ---V-------KEDKRHKFSIDKDGHSYFASLEIIDVTIEDAG  185 (254)
Q Consensus       118 ~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~--~~---~-------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G  185 (254)
                      .+..+.+.+|+.++|.|..... ...+.||+..  ..   +       .......+.....+  ..+.|.|.++..+|+|
T Consensus         6 sP~~l~~~~G~~vtl~C~~s~~-~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~--~~~~L~I~~~~~~Dsa   82 (104)
T d1yqvl1           6 SPAIMSASPGEKVTMTCSASSS-VNYMYWYQQKSGTSPKRWIYDTSKLASGVPVRFSGSGSG--TSYSLTISSMETEDAA   82 (104)
T ss_dssp             ESSEEEECTTCCEEEEEEESSC-CSCCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEET--TEEEEEESSCCGGGCE
T ss_pred             cCCeEEECCCCCEEEEEEeCCC-CCccEEEEeeccCceEEEEecccccCCCcCceEEEecCC--CEEEEEecccCcccCC
Confidence            3456778899999999986433 3357899742  10   0       00111111111111  1247999999999999


Q ss_pred             eEEEEEE
Q psy7036         186 KYKVTAK  192 (254)
Q Consensus       186 ~y~C~~~  192 (254)
                      .|.|...
T Consensus        83 ~YyCa~~   89 (104)
T d1yqvl1          83 TYYCQQW   89 (104)
T ss_dssp             EEEEEEC
T ss_pred             eEEEEec
Confidence            9999754

>d3b5ha2 b.1.1.4 (A:23-102) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.26  E-value=1.2e-05  Score=43.78  Aligned_cols=57  Identities=23%  Similarity=0.430  Sum_probs=40.8

Q ss_pred             cCCCeEEEEEEEeeCC--CCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEE
Q psy7036          21 DEGNRLIFECQLLCNP--KPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAK   89 (254)
Q Consensus        21 ~~g~~v~l~C~~~~~~--~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~   89 (254)
                      ..|..+.|+|.+...+  ...-.|.|+|+.+.........          -.+.|..  .+++|.|.|+..
T Consensus        10 ~~~sk~~LtCnLt~s~~~i~ghrW~K~gkvl~ed~~~~~~----------tey~V~~--~D~SGeY~CVFl   68 (80)
T d3b5ha2          10 DLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALPGQK----------TEFKVDS--DDQWGEYSCVFL   68 (80)
T ss_dssp             EETTEEEEEEEEESCSSCCCEEEEESSSEEEECTTCCCSE----------EEEEECG--GGCCEEEEEEEE
T ss_pred             cCCCCEEEEEECCCCCCceeeeEEeeCCEEccccCCCCCc----------eEEEEec--CCCCceEEEEEc
Confidence            5688999999997543  2346899999999865332111          1466664  779999999965

>d3cx5k1 b.1.1.1 (K:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.26  E-value=9.3e-07  Score=53.22  Aligned_cols=72  Identities=22%  Similarity=0.295  Sum_probs=45.7

Q ss_pred             CCeeeecCCCeEEEEEEEeeCCCCeEEEEECC--Ee---c-------ccCCcceEEEcCCCCceeeEEEEccCCCCCcee
Q psy7036         119 PSIRQEDDGKRLLFECRIQADPAPTVIWSHSG--VQ---V-------KEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGK  186 (254)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~--~~---~-------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~  186 (254)
                      +..+.+.+|+.++|.|.........+.||+..  +.   +       ......++.....+.  ...|.|.+++.+|+|.
T Consensus         8 P~s~~~~~G~~vtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~~~~--~~~L~I~~~~~~Dsa~   85 (107)
T d3cx5k1           8 PVSLAASLGDRVTISCRASQDINNFLNWYQQKPDGTIKLLIYYTSRLHAGVPSRFSGSGSGT--DYSLTISNLEPEDIAT   85 (107)
T ss_dssp             STTCCBCSSSCCEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTCCCEEETT--EEEEECSCCCSCCCSE
T ss_pred             CCEEEECCCCCEEEEEEcCCCcCCCeEEEEcCCCCcceEEEEeecccCCCcCCCEEEEccCC--EEEEEEeEeeecCCCc
Confidence            34456778999999999766555569999732  11   0       001111111111111  2489999999999999


Q ss_pred             EEEEEE
Q psy7036         187 YKVTAK  192 (254)
Q Consensus       187 y~C~~~  192 (254)
                      |.|.+.
T Consensus        86 YyCa~~   91 (107)
T d3cx5k1          86 YFCQHH   91 (107)
T ss_dssp             EEEEEC
T ss_pred             EEeeeC
Confidence            999754

>d1jnhb1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.26  E-value=7.6e-06  Score=48.95  Aligned_cols=73  Identities=14%  Similarity=0.225  Sum_probs=46.3

Q ss_pred             CceeecCCCeEEEEEEEeeCC--CCceEEEeC--CE------Eee---------eCCcceEEEeecCCcceEEEEEEecc
Q psy7036          16 QLRQEDEGNRLIFECQLLCNP--KPDIVWFRG--ET------QLS---------EDTRTVMKTTPIGTNKYLVALELDDV   76 (254)
Q Consensus        16 ~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~--~~------~~~---------~~~~~~~~~~~~~~~~~~~~l~i~~~   76 (254)
                      ....+.+|+++.|+|.+.|..  ...+.|+|.  |+      .+.         ..-+.++....+.. .....|.|.++
T Consensus         8 G~~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglewvg~i~~~~~~t~ya~s~kgRfTiS~D~s-~~t~yLq~~~L   86 (117)
T d1jnhb1           8 GAELARPGASVKLSCRTSGYSFTTYWMQWVRQRPGQGLEWIAAIYPGDDDARYTQKFKGKATLTADRS-SSIVYLQLNSL   86 (117)
T ss_dssp             CCEECCTTCCEEEEEEEESSCSSSSEEEEEEECTTSCEEEEEEEEGGGTEEEECTTTTTTEEEEEETT-TTEEEEEECSC
T ss_pred             CCceECCCCCEEEEEEEcCCCCCCCceeeeeeCCCCcceeeeccCccccccccccceeEEEEEeccCc-cceeeeccccc
Confidence            345678999999999999853  456889872  21      111         11112222222221 22336999999


Q ss_pred             CCCCCeEEEEEEE
Q psy7036          77 IETDAGLYKVKAK   89 (254)
Q Consensus        77 ~~~d~G~Y~C~~~   89 (254)
                      +.+|++.|.|...
T Consensus        87 ~~eDTAvYYCAr~   99 (117)
T d1jnhb1          87 TSEDSAVYSCSRG   99 (117)
T ss_dssp             CGGGCEEEEEEEE
T ss_pred             CCCcceEEEEeec
Confidence            9999999999654

>d1d5mb1 b.1.1.2 (B:93-190) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DR group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DR group [TaxId: 9606]

Probab=98.26  E-value=4.9e-06  Score=49.03  Aligned_cols=74  Identities=15%  Similarity=0.209  Sum_probs=43.5

Q ss_pred             CCeEEEEEEEeeCCC--CeEEEEECCEecccCCc-ceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcceEEE
Q psy7036         127 GKRLLFECRIQADPA--PTVIWSHSGVQVKEDKR-HKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATI  202 (254)
Q Consensus       127 g~~~~l~C~~~~~~~--~~~~W~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~  202 (254)
                      ++..+|.|.+.++.+  ..+.|.+||..+..... .......++ .+. .+..-.+..++...|+|.+.+.......+.
T Consensus        18 ~~~~tL~C~v~~F~P~~i~v~W~~~g~~~~~~~~~~~~~~~~dg-tf~-~~s~l~~~~~~~~~ytC~V~H~sl~~pi~~   94 (98)
T d1d5mb1          18 QHHNLLVCSVNGFYPGSIEVRWFRNGQEEKTGVVSTGLIQNGDW-TFQ-TLVMLETVPRSGEVYTCQVEHPSVTSPLTV   94 (98)
T ss_dssp             ---CEEEEEEEEEBSSCCEEEEEETTEECCSSEEECCCEECSSS-CEE-EEEEEECCCCTTCEEEEEEECTTCSSCEEE
T ss_pred             CCceEEEEEEeeeECCCcEEEEEECCEEcCCCCEECeEEeCCCc-EEE-EEEEeeEcCCCCCEEEEEEEECCCCCCeEE
Confidence            556689999998644  36999999988754321 112222332 222 233333456677799999998765544443

>d1hdmb1 b.1.1.2 (B:88-185) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=98.26  E-value=7.5e-06  Score=48.10  Aligned_cols=74  Identities=11%  Similarity=0.167  Sum_probs=47.1

Q ss_pred             cCCCeEEEEEEEeeCCC--CeEEEEECCEecccCCc-ceEEEcCCCC-ceeeEEEEccCCCCCceeEEEEEEcCCCcceE
Q psy7036         125 DDGKRLLFECRIQADPA--PTVIWSHSGVQVKEDKR-HKFSIDKDGH-SYFASLEIIDVTIEDAGKYKVTAKNELGESNA  200 (254)
Q Consensus       125 ~~g~~~~l~C~~~~~~~--~~~~W~~~~~~~~~~~~-~~~~~~~~~~-~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~  200 (254)
                      ..++.++|.|.+.++.+  ..++|.+||..+..... .......++. ...+.|.+.   .++...|+|.+.+.......
T Consensus        15 ~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~s~L~v~---~~~~~~ytC~V~H~sl~~p~   91 (98)
T d1hdmb1          15 NTREPVMLACYVWGFYPAEVTITWRKNGKLVMHSSAHKTAQPNGDWTYQTLSHLALT---PSYGDTYTCVVEHIGAPEPI   91 (98)
T ss_dssp             SSSCSEEEEEEEEEEBSSCCEEEEEETTEECCCCCSBCCCEECSSSCEEEEEEEEEC---CCTTCCEEEEEECTTSSSCE
T ss_pred             cCCCcEEEEEEEEEEECCCCEEEEEECCEeccCCeEeCceEECCCCCEEEEEEeEcC---CCCCCEEEEEEEeCCCCCCe
Confidence            34677899999999743  46999999998754322 2223333332 334556554   34455899999987655443


Q ss_pred             E
Q psy7036         201 T  201 (254)
Q Consensus       201 ~  201 (254)
                      .
T Consensus        92 ~   92 (98)
T d1hdmb1          92 L   92 (98)
T ss_dssp             E
T ss_pred             e
Confidence            3

>d1j05a_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=98.26  E-value=4.4e-06  Score=50.55  Aligned_cols=73  Identities=21%  Similarity=0.253  Sum_probs=45.8

Q ss_pred             CCeeeecCCCeEEEEEEEeeC----CCCeEEEEEC--CEe---cc-------cCCcceEEEcCCCCceeeEEEEccCCCC
Q psy7036         119 PSIRQEDDGKRLLFECRIQAD----PAPTVIWSHS--GVQ---VK-------EDKRHKFSIDKDGHSYFASLEIIDVTIE  182 (254)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~----~~~~~~W~~~--~~~---~~-------~~~~~~~~~~~~~~~~~~~l~i~~~~~~  182 (254)
                      +..+.+.+|+.++|.|.....    ....+.||+.  ++.   +.       .....++....++.  ...|.|.+++.+
T Consensus         8 P~~l~v~~G~svtl~C~~s~s~~~~~~~~~~WYrq~~g~~p~~liy~~~~~~~~~~~~~~~~~~~~--~~~L~I~~~~~~   85 (111)
T d1j05a_           8 PASLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSRT--DFTLIIDPVEAD   85 (111)
T ss_dssp             CSEEECCTTSCEEEEEEESSCCBSSSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEECSSS--EEEEEESSCCGG
T ss_pred             CCEEEECCCCCEEEEEEeccCCccCCceeEEEEEccCCCCCEEEEEeeccccCCCCCcEEEecCCC--EEEEEEcccccc
Confidence            456677889999999986432    1223899973  221   10       01111222222222  358999999999


Q ss_pred             CceeEEEEEEc
Q psy7036         183 DAGKYKVTAKN  193 (254)
Q Consensus       183 d~G~y~C~~~~  193 (254)
                      |+|.|.|.+.+
T Consensus        86 Dsa~YyCa~~~   96 (111)
T d1j05a_          86 DVATYYCQQTN   96 (111)
T ss_dssp             GCEEEEEEECS
T ss_pred             cCccEEEeecC
Confidence            99999997654

>d1rzfl1 b.1.1.1 (L:2-108) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=98.26  E-value=4.3e-06  Score=50.65  Aligned_cols=74  Identities=20%  Similarity=0.298  Sum_probs=47.1

Q ss_pred             CCeeeecCCCeEEEEEEEeeCC--CCeEEEEECC--Ee---cc-------cCCcceEEEcCCCCceeeEEEEccCCCCCc
Q psy7036         119 PSIRQEDDGKRLLFECRIQADP--APTVIWSHSG--VQ---VK-------EDKRHKFSIDKDGHSYFASLEIIDVTIEDA  184 (254)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~~--~~~~~W~~~~--~~---~~-------~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~  184 (254)
                      +..+.+.+|+.++|.|...+..  ...+.||+..  ..   +.       .....++....++.  .+.|.|.+++.+|+
T Consensus         7 p~s~~v~~G~svtl~C~~s~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~--~~~L~I~~~~~~Ds   84 (111)
T d1rzfl1           7 PPSVSAAPGQKVTISCSGSSSNIGNNDVSWYQQFPGTVPKLVIYENNERPSGIPDRFSGSKSGT--SATLGITGLQTGDE   84 (111)
T ss_dssp             CSEEEECTTSCEEEEEECCCCCCCTSCEEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETT--EEEEEESSCCGGGC
T ss_pred             CcceEeCCCCCEEEEEEECCcCCcCCcccceeeecccceEEEeeecCCCccccccceeeeCCCC--EeeeEEeeeccccC
Confidence            4467888999999999875432  3359999731  11   10       01111222222222  24799999999999


Q ss_pred             eeEEEEEEcC
Q psy7036         185 GKYKVTAKNE  194 (254)
Q Consensus       185 G~y~C~~~~~  194 (254)
                      |.|.|.+...
T Consensus        85 a~YyCA~~~~   94 (111)
T d1rzfl1          85 ADYYCGTWDS   94 (111)
T ss_dssp             SEEEEEEEET
T ss_pred             cceEEeecCC
Confidence            9999987643

>d1cd0a_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=98.25  E-value=2.3e-06  Score=51.92  Aligned_cols=73  Identities=25%  Similarity=0.323  Sum_probs=47.5

Q ss_pred             CCeeeecCCCeEEEEEEEeeCCC--CeEEEEECC--Eec----------c--cCCcceEEEcCCCCceeeEEEEccCCCC
Q psy7036         119 PSIRQEDDGKRLLFECRIQADPA--PTVIWSHSG--VQV----------K--EDKRHKFSIDKDGHSYFASLEIIDVTIE  182 (254)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~~~--~~~~W~~~~--~~~----------~--~~~~~~~~~~~~~~~~~~~l~i~~~~~~  182 (254)
                      +..+.+.+|+.++|.|...+...  .-+.|+|..  +..          .  ...+.........  ..+.|.|.+++.+
T Consensus         7 P~s~sv~~G~svtL~C~~s~~~~~~~~i~WyrQ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~L~i~~l~~~   84 (111)
T d1cd0a_           7 PHSVSESPGKTVTISCTRSSGNIDSNYVQWYQQRPGSAPITVIYEDNQRPSGVPDRFAGSIDRSS--NSASLTISGLKTE   84 (111)
T ss_dssp             CSEEEECTTSCEEEEEEESSSCGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTT--TEEEEEECSCCGG
T ss_pred             CCeeEECCCCCEEEEEEECCCCccCceEEEeeeccCceeEeeeccccccCcccCCceeEeecCCC--CccccccccCCcc
Confidence            45678889999999999765432  348899742  110          0  1122223222222  2358999999999


Q ss_pred             CceeEEEEEEc
Q psy7036         183 DAGKYKVTAKN  193 (254)
Q Consensus       183 d~G~y~C~~~~  193 (254)
                      |++.|.|....
T Consensus        85 Dsa~YyCA~~~   95 (111)
T d1cd0a_          85 DEADYYCQSYD   95 (111)
T ss_dssp             GCEEEEEEEEE
T ss_pred             cCcEEEEeecc
Confidence            99999998654

>d1fo0a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.25  E-value=1.9e-06  Score=52.67  Aligned_cols=76  Identities=13%  Similarity=0.230  Sum_probs=48.2

Q ss_pred             CCCeeeecCCCeEEEEEEEee-CCCCeEEEEECC--Ee----cc---------cCCcceEEEcCCCCceeeEEEEccCCC
Q psy7036         118 KPSIRQEDDGKRLLFECRIQA-DPAPTVIWSHSG--VQ----VK---------EDKRHKFSIDKDGHSYFASLEIIDVTI  181 (254)
Q Consensus       118 ~~~~~~~~~g~~~~l~C~~~~-~~~~~~~W~~~~--~~----~~---------~~~~~~~~~~~~~~~~~~~l~i~~~~~  181 (254)
                      .+..+.+.+|++++|.|.... .....+.||+..  +.    +.         ...+..+......  ....|.|.+++.
T Consensus         5 ~p~~v~~~~G~~Vtl~C~~~~~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~L~I~~~~~   82 (115)
T d1fo0a_           5 TQTSISVMEKTTVTMDCVYETQDSSYFLFWYKQTASGEIVFLIRQDSYKKENATVGHYSLNFQKPK--SSIGLIITATQI   82 (115)
T ss_dssp             CCCEEEEETTCCEEECCEECCCCSSCEEEEEEECTTCCEEEEEEEETTCCSCCEETTEEEEEEGGG--TEEEEEECSCCG
T ss_pred             cCCEEEEcCCCCEEEEEEEcCCCCCCCCEEEEeCCCCCCEEEEEEecceeecccCCceEEEEeccC--CEEEEEECCCCc
Confidence            345677889999999998654 334468899832  11    00         0011122222111  234799999999


Q ss_pred             CCceeEEEEEEcCC
Q psy7036         182 EDAGKYKVTAKNEL  195 (254)
Q Consensus       182 ~d~G~y~C~~~~~~  195 (254)
                      +|+|.|.|.+....
T Consensus        83 ~Dsa~YyCa~~~~~   96 (115)
T d1fo0a_          83 EDSAVYFCAMRGDY   96 (115)
T ss_dssp             GGCEEEEEEEECCC
T ss_pred             cccccccceeecCC
Confidence            99999999987543

>d1w72l1 b.1.1.1 (L:1-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=98.25  E-value=2e-06  Score=51.83  Aligned_cols=74  Identities=20%  Similarity=0.284  Sum_probs=46.6

Q ss_pred             CCeeeecCCCeEEEEEEEeeCCCCeEEEEECC--Ee---c-------ccCCcceEEEcCCCCceeeEEEEccCCCCCcee
Q psy7036         119 PSIRQEDDGKRLLFECRIQADPAPTVIWSHSG--VQ---V-------KEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGK  186 (254)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~--~~---~-------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~  186 (254)
                      +..+.+.+|++++|.|.........+.||+..  +.   +       ......++....++.  ...|.|.+++.+|++.
T Consensus         7 p~sl~~~~G~svtl~C~~~~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~L~I~~l~~~Dsav   84 (109)
T d1w72l1           7 PPSVSVAPGQTARITCGGNNIGSRSVHWYQQKPGQAPVLVVYDDSDRPSGIPERFSGSNSGN--MATLTISRVEAGDEAD   84 (109)
T ss_dssp             CSEEEECTTSCEEEEEECTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETT--EEEEEESSCCGGGCEE
T ss_pred             CCeEEECCCCCEEEEEEcCCCCCcceeeeeccccceeEEEEEccccCCCceeeeEeeecCCC--ccceEEeeeccCCCEE
Confidence            34577889999999998654334468899732  11   1       001111121221111  3479999999999999


Q ss_pred             EEEEEEcC
Q psy7036         187 YKVTAKNE  194 (254)
Q Consensus       187 y~C~~~~~  194 (254)
                      |.|.+...
T Consensus        85 YyCA~~~~   92 (109)
T d1w72l1          85 YYCQVWDS   92 (109)
T ss_dssp             EEEEEEET
T ss_pred             EEEEecCC
Confidence            99987653

>d1hxmb1 b.1.1.1 (B:1-123) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=98.25  E-value=1e-05  Score=49.76  Aligned_cols=75  Identities=20%  Similarity=0.250  Sum_probs=47.1

Q ss_pred             CeeeecCCCeEEEEEEEeeCC--CCeEEEEECC--Ee---c----------c--cCCcceEEEcCCCCceeeEEEEccCC
Q psy7036         120 SIRQEDDGKRLLFECRIQADP--APTVIWSHSG--VQ---V----------K--EDKRHKFSIDKDGHSYFASLEIIDVT  180 (254)
Q Consensus       120 ~~~~~~~g~~~~l~C~~~~~~--~~~~~W~~~~--~~---~----------~--~~~~~~~~~~~~~~~~~~~l~i~~~~  180 (254)
                      ..+...+|+.++|.|.+.+..  ...+.||+..  +.   +          .  .....++....+.......|.|.+++
T Consensus         9 ~s~t~~~g~t~~LsC~~sg~~~s~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~i~~l~   88 (123)
T d1hxmb1           9 ISSTKTLSKTARLECVVSGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPETSTSTLTIHNVE   88 (123)
T ss_dssp             SEEEEETTCCEEEEEEEESSCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETTTTEEEEEECSCC
T ss_pred             CeEEeCCCCCEEEEEEEcCCCcccCeEEEEEECCCCCceEeeecccccccccccccccceeEEeeeccccceeecccccc
Confidence            456677899999999988753  3358899831  11   1          0  01111232222111123479999999


Q ss_pred             CCCceeEEEEEEcC
Q psy7036         181 IEDAGKYKVTAKNE  194 (254)
Q Consensus       181 ~~d~G~y~C~~~~~  194 (254)
                      .+|++.|.|.+...
T Consensus        89 ~~Dsa~YyCA~~~~  102 (123)
T d1hxmb1          89 KQDIATYYCALWEA  102 (123)
T ss_dssp             GGGCEEEEEEEEEE
T ss_pred             cccCcEEEEeeeCC
Confidence            99999999987643

>d1kcvh2 b.1.1.2 (H:117-217) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.25  E-value=2.5e-06  Score=50.72  Aligned_cols=84  Identities=12%  Similarity=0.092  Sum_probs=51.2

Q ss_pred             CCCeeE-eCCCceeecCCCeEEEEEEEee-CC-CCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeE
Q psy7036           7 FAPSFT-QKPQLRQEDEGNRLIFECQLLC-NP-KPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGL   83 (254)
Q Consensus         7 ~~p~~~-~~~~~~~v~~g~~v~l~C~~~~-~~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~   83 (254)
                      .+|.+. ..|.. ....++.++|.|.+.| .| ...|+|.+++...........  ..++.....+.|.|..-.. +.|.
T Consensus         4 ~aP~V~~l~p~~-~~~~~~~~tl~Cl~~gf~P~~i~v~W~~~~~~~~~~~~~~~--~~~g~~s~~S~L~v~~~~w-~~~~   79 (101)
T d1kcvh2           4 TAPSVFPLVPGS-ATAAASAVTLGCLVKGYFPEPVTVAWNEGALSSGVLTVSAV--LQSGLYTLSSNTTVASGTW-PSAS   79 (101)
T ss_dssp             BCCEEEEECCCS-CCTTCSEEEEEEEEEEEBSSCCEEEEGGGTCCTTEEECCCE--EETTEEEEEEEEEEETTTT-TTSC
T ss_pred             CCCEEEeECCCc-cccCCCeEEEEEEEEEEeCCCCEEEEecCCCcccceeeeee--cCCCCEEEEEEEEEchhhc-CCCe
Confidence            456543 34432 2346889999999988 44 468999887754221111111  2234444556777765554 4678


Q ss_pred             EEEEEEcCCCc
Q psy7036          84 YKVKAKNKMGE   94 (254)
Q Consensus        84 Y~C~~~~~~~~   94 (254)
                      |+|.|.+....
T Consensus        80 ytC~V~H~~~~   90 (101)
T d1kcvh2          80 VTCLVAHPKSS   90 (101)
T ss_dssp             CEEEEEEGGGT
T ss_pred             EEEEEEeCCCC
Confidence            99999976544

>d1yjdc1 b.1.1.1 (C:1-118) CD28 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD28
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.24  E-value=5.6e-06  Score=50.76  Aligned_cols=70  Identities=13%  Similarity=0.055  Sum_probs=41.8

Q ss_pred             eeecCCCeEEEEEEEeeCC--CCc-eEEEeCC--E--Ee------------eeCCcceEEEeecCCcceEEEEEEeccCC
Q psy7036          18 RQEDEGNRLIFECQLLCNP--KPD-IVWFRGE--T--QL------------SEDTRTVMKTTPIGTNKYLVALELDDVIE   78 (254)
Q Consensus        18 ~~v~~g~~v~l~C~~~~~~--~~~-v~W~~~~--~--~~------------~~~~~~~~~~~~~~~~~~~~~l~i~~~~~   78 (254)
                      ..+.+|+.|+|.|...+..  ... +.|++..  .  .+            ....++.......+   ....|.|.+++.
T Consensus        10 ~~v~~g~svtL~C~~s~~~~~~~~~~w~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~L~I~~l~~   86 (118)
T d1yjdc1          10 MLVAYDNAVNLSCKYSYNLFSREFRASLHKGLDSAVEVCVVYGNYSQQLQVYSKTGFNCDGKLGN---ESVTFYLQNLYV   86 (118)
T ss_dssp             EEECBTTBEEEEEEESCCSSCSEEEEEEEESTTCCCEEEEEEEESSSCCEEECSSSCEEEEEECS---SEEEEEEESCCG
T ss_pred             cEEeCCCCEEEEEEEecCCCCccEEEEEEECCCCccEEEEEEeCCCeEECCccCCcEEEEEECCC---CeEEEEECCCCc
Confidence            4577899999999986533  222 3455421  1  11            01112222222221   234799999999


Q ss_pred             CCCeEEEEEEEc
Q psy7036          79 TDAGLYKVKAKN   90 (254)
Q Consensus        79 ~d~G~Y~C~~~~   90 (254)
                      +|+|.|.|.+..
T Consensus        87 ~DsavYyCa~~~   98 (118)
T d1yjdc1          87 NQTDIYFCKIEV   98 (118)
T ss_dssp             GGCEEEEEEEEE
T ss_pred             ccCeEEEEEEec
Confidence            999999998754

>d1kxvc_ b.1.1.1 (C:) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=98.24  E-value=8.5e-06  Score=49.05  Aligned_cols=72  Identities=14%  Similarity=0.261  Sum_probs=47.8

Q ss_pred             eeecCCCeEEEEEEEeeCCCC--eEEEEECC--Ee------cc--------cCCcceEEEcCCCCceeeEEEEccCCCCC
Q psy7036         122 RQEDDGKRLLFECRIQADPAP--TVIWSHSG--VQ------VK--------EDKRHKFSIDKDGHSYFASLEIIDVTIED  183 (254)
Q Consensus       122 ~~~~~g~~~~l~C~~~~~~~~--~~~W~~~~--~~------~~--------~~~~~~~~~~~~~~~~~~~l~i~~~~~~d  183 (254)
                      ..+.+|+.++|.|.+.|+...  .+.|+|..  +.      +.        ..-..++....+.......|.|.+++.+|
T Consensus         9 ~~vkPg~sl~LsC~~SG~~~s~y~~~W~RQ~pGkglewl~~i~~~g~~~y~~~~kgR~tiS~D~s~~~~~L~i~~L~~eD   88 (119)
T d1kxvc_           9 GTVPAGGSLRLSCAASGNTLCTYDMSWYRRAPGKGRDFVSGIDNDGTTTYVDSVAGRFTISQGNAKNTAYLQMDSLKPDD   88 (119)
T ss_dssp             EEECTTCCEEEEEEEESCTTCCEEEEEEEECTTSCEEEEEEECTTCCEEECGGGBTTEEEEECSSTTEEEEEECSCCGGG
T ss_pred             ceECCCCCeEEEEEEcCCCccCCceeeeeeCCCCcceeeeecccccchhhhhhhhcceEEecccCCcceecccccCCcCC
Confidence            457789999999999886543  47888742  11      11        11112344444443334579999999999


Q ss_pred             ceeEEEEEEc
Q psy7036         184 AGKYKVTAKN  193 (254)
Q Consensus       184 ~G~y~C~~~~  193 (254)
                      ++.|.|....
T Consensus        89 tA~YYCAr~~   98 (119)
T d1kxvc_          89 TAMYYCKPSL   98 (119)
T ss_dssp             CEEEEEEEEE
T ss_pred             cceEeeeecc
Confidence            9999997654

>d1lgva1 b.1.1.1 (A:1-112) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 4 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 4 [TaxId: 9606]

Probab=98.24  E-value=5.3e-06  Score=50.30  Aligned_cols=75  Identities=21%  Similarity=0.311  Sum_probs=47.9

Q ss_pred             CCeeeecCCCeEEEEEEEeeCC---CCeEEEEECC--Ee---cc-------cCCcceEEEcCCCCceeeEEEEccCCCCC
Q psy7036         119 PSIRQEDDGKRLLFECRIQADP---APTVIWSHSG--VQ---VK-------EDKRHKFSIDKDGHSYFASLEIIDVTIED  183 (254)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~~---~~~~~W~~~~--~~---~~-------~~~~~~~~~~~~~~~~~~~l~i~~~~~~d  183 (254)
                      +..+.+.+|++++|.|...+..   ...+.||+..  +.   +.       .....++.......  ...|.|.+++.+|
T Consensus         7 P~s~~~~~G~svtl~C~~~~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~L~I~~l~~~D   84 (112)
T d1lgva1           7 PASVSGSPGQSITVSCTGVSSIVGSYNLVSWYQQHPGKAPKLLTYEVNKRPSGVSDRFSGSKSGN--SASLTISGLQAED   84 (112)
T ss_dssp             CSEEEECTTCCEEEEEECCCCSSSCCCCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETT--EEEEEECSCCGGG
T ss_pred             CCcEEECCCCCEEEEEEeCCCCCCCCCcceeeeeeecccceeeeeeeccccCCCcccEEEECCCC--EeeEEeCcCcccc
Confidence            5677888999999999976532   2358999832  11   10       11111222222222  2479999999999


Q ss_pred             ceeEEEEEEcCC
Q psy7036         184 AGKYKVTAKNEL  195 (254)
Q Consensus       184 ~G~y~C~~~~~~  195 (254)
                      +|.|.|.+.+..
T Consensus        85 sa~YyCa~~~~~   96 (112)
T d1lgva1          85 EADYYCSSYDGS   96 (112)
T ss_dssp             CEEEEEEEECSS
T ss_pred             CEEEEEeeecCC
Confidence            999999876543

>d1mjul2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain kappa constant domain, CL-kappa
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.24  E-value=1.7e-06  Score=52.13  Aligned_cols=78  Identities=17%  Similarity=0.177  Sum_probs=49.2

Q ss_pred             CCCeEEEEEEEeeCCC--CeEEEEECCEecccCCcceE--EEcCCC-CceeeEEEEccCCCCCceeEEEEEEcCCCcceE
Q psy7036         126 DGKRLLFECRIQADPA--PTVIWSHSGVQVKEDKRHKF--SIDKDG-HSYFASLEIIDVTIEDAGKYKVTAKNELGESNA  200 (254)
Q Consensus       126 ~g~~~~l~C~~~~~~~--~~~~W~~~~~~~~~~~~~~~--~~~~~~-~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~  200 (254)
                      .+..++|.|.+.++.+  ..|.|.+||..+........  ....++ +...+.|.|..-.......|+|.+.+.......
T Consensus        19 ~~~~~tL~Cl~~~f~P~~i~v~W~~ng~~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~W~~g~~ytC~V~H~~~~~pi   98 (107)
T d1mjul2          19 TSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPI   98 (107)
T ss_dssp             TTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTTCSSCE
T ss_pred             cCCceEEEEEEEEeECCCCEEEEEECCEEccCCeEeccccEecCCCCEEEEEEEEECHHHhCCCCEEEEEEEECCCCCCe
Confidence            3567899999988643  47999999988754321111  112222 344567777765555566899999987655444


Q ss_pred             EEE
Q psy7036         201 TIS  203 (254)
Q Consensus       201 ~~~  203 (254)
                      ...
T Consensus        99 ~kt  101 (107)
T d1mjul2          99 VKS  101 (107)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            433

>d1o0va1 b.1.1.2 (A:228-330) Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.24  E-value=2.4e-06  Score=51.10  Aligned_cols=71  Identities=11%  Similarity=0.151  Sum_probs=47.4

Q ss_pred             CCCeEEEEEEEeeC-CCC-eEEEEECCEecccCCcceEEEcCCC-CceeeEEEEccCCCCCceeEEEEEEcCCC
Q psy7036         126 DGKRLLFECRIQAD-PAP-TVIWSHSGVQVKEDKRHKFSIDKDG-HSYFASLEIIDVTIEDAGKYKVTAKNELG  196 (254)
Q Consensus       126 ~g~~~~l~C~~~~~-~~~-~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~G~y~C~~~~~~~  196 (254)
                      .+..++|.|.+.++ |.. .+.|.++|..+............++ +...+.|.|..-.......|+|.+.+...
T Consensus        20 ~~~tv~L~Cl~~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~~~y~~~S~L~v~~~~w~~~~~ytC~V~H~~~   93 (104)
T d1o0va1          20 FPPTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLSTASTTQEGELASTQSELTLSQKHWLSDRTYTCQVTYQGH   93 (104)
T ss_dssp             CCSEEEEEEEEEEECCCCEEEEEEETTEECCGGGEEEEEEEETTEEEEEEEEEEEHHHHHTTCCEEEEEEETTE
T ss_pred             CCCeEEEEEEEEEEECCCcEEEEEECCEEccCCceeeeEeCCCCeEEEEEEEEECHHHcCCCCEEEEEEEECCE
Confidence            45678999999885 443 5999999998865433222233333 23456777776554556689999998753

>d1mqkh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=98.24  E-value=1e-05  Score=48.81  Aligned_cols=74  Identities=14%  Similarity=0.235  Sum_probs=46.4

Q ss_pred             ceeecCCCeEEEEEEEeeCC--CCceEEEeC--CEE------eee---------CCcceEEEeecCCcceEEEEEEeccC
Q psy7036          17 LRQEDEGNRLIFECQLLCNP--KPDIVWFRG--ETQ------LSE---------DTRTVMKTTPIGTNKYLVALELDDVI   77 (254)
Q Consensus        17 ~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~--~~~------~~~---------~~~~~~~~~~~~~~~~~~~l~i~~~~   77 (254)
                      ...+.+|++++|+|.+.|..  ...+.|+|.  |+.      +..         .-+.++....+.. .....|.|.+++
T Consensus         9 ~~lvkPG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgR~tis~D~s-~nt~~L~i~~L~   87 (123)
T d1mqkh_           9 GDLVQPGGSLKLSCAASGFTFSSYTMSWVRQTPEKRLEWVASINNGGGRTYYPDTVKGRFTISRDNA-KNTLYLQMSSLK   87 (123)
T ss_dssp             CCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECTTSSCEECCTTTBTTEEEEEEGG-GTEEEEEECSCC
T ss_pred             CceECCCCCEEEEEEECcccCcCCceEeeecCCCcceeeeeecCccccccccchhccEEEEEEecCc-ccccccceeeec
Confidence            34688999999999998754  446789872  211      111         1111222222111 223369999999


Q ss_pred             CCCCeEEEEEEEcC
Q psy7036          78 ETDAGLYKVKAKNK   91 (254)
Q Consensus        78 ~~d~G~Y~C~~~~~   91 (254)
                      .+|++.|.|.....
T Consensus        88 ~eDtAvYYCAr~~~  101 (123)
T d1mqkh_          88 SEDTAMYYCVRHEY  101 (123)
T ss_dssp             GGGCEEEEEEEEET
T ss_pred             cCcccceeEEecCC
Confidence            99999999976543

>d1jpth1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=98.24  E-value=9.7e-06  Score=48.43  Aligned_cols=73  Identities=12%  Similarity=0.171  Sum_probs=46.1

Q ss_pred             ceeecCCCeEEEEEEEeeCC--CCceEEEeC--CE------Eee---------eCCcceEEEeecCCcceEEEEEEeccC
Q psy7036          17 LRQEDEGNRLIFECQLLCNP--KPDIVWFRG--ET------QLS---------EDTRTVMKTTPIGTNKYLVALELDDVI   77 (254)
Q Consensus        17 ~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~--~~------~~~---------~~~~~~~~~~~~~~~~~~~~l~i~~~~   77 (254)
                      ...+++|++++|+|.+.|..  ...+.|+|.  |+      .+.         ..-+.++....+.. .-...|.+.+++
T Consensus         9 ~~~vkpg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewvg~i~~~~~~~~ya~s~kgR~tiSrD~s-~nt~yL~m~~L~   87 (117)
T d1jpth1           9 GGLVQPGGSLRLSCAASGFNIKEYYMHWVRQAPGKGLEWVGLIDPEQGNTIYDPKFQDRATISADNS-KNTAYLQMNSLR   87 (117)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECTTTCCEEECTTTTTTEEEEEEGG-GTEEEEEECSCC
T ss_pred             CceECCCCCEEEEEEEcCCCCcCCceEcceeCCCcceEeeeecccccccccccccceeeEEEEeccc-cceEEecccccC
Confidence            45789999999999998854  456888873  11      111         11112222222111 223368999999


Q ss_pred             CCCCeEEEEEEEc
Q psy7036          78 ETDAGLYKVKAKN   90 (254)
Q Consensus        78 ~~d~G~Y~C~~~~   90 (254)
                      .+|++.|.|....
T Consensus        88 ~eDTAvYYCAr~~  100 (117)
T d1jpth1          88 AEDTAVYYCARDT  100 (117)
T ss_dssp             GGGCEEEEEEEEC
T ss_pred             CCCceEEEEeecC
Confidence            9999999997543

>d1um5h1 b.1.1.1 (H:3-119) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.23  E-value=7.6e-06  Score=49.07  Aligned_cols=75  Identities=13%  Similarity=0.152  Sum_probs=47.5

Q ss_pred             CCCceeecCCCeEEEEEEEeeCC--CCceEEEeC--CEE------eee---------CCcceEEEeecCCcceEEEEEEe
Q psy7036          14 KPQLRQEDEGNRLIFECQLLCNP--KPDIVWFRG--ETQ------LSE---------DTRTVMKTTPIGTNKYLVALELD   74 (254)
Q Consensus        14 ~~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~--~~~------~~~---------~~~~~~~~~~~~~~~~~~~l~i~   74 (254)
                      +.....+.+|++++|+|.+.|..  ...+.|+|.  |+.      +..         .-+.++....+.. .....|.|.
T Consensus         5 esg~~~~kPG~sl~LsC~~SG~~~~~y~~~WvRQ~pGkglewl~~i~~~~~~~~y~~~~kgRftiS~D~s-~~t~~L~m~   83 (117)
T d1um5h1           5 QSGPVLVKPGGSVKMSCKASEYTLTSYLFQWVKQKSGQGLEWIGYIYPYNGGTRYNEKFRGKATLTSDKS-SNTAYLELS   83 (117)
T ss_dssp             ECCCEEECTTCCEEEEEEESSCCCSCCEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTCEEEEEETT-TTEEEEEEC
T ss_pred             eECCceECCCCCEEEEEEEccccCCCCcCccceeCCCccceeeeecCCccCccccccceeeeEEEEeccC-ceeEeeccc
Confidence            34456789999999999998743  456889873  211      111         1112222222211 223369999


Q ss_pred             ccCCCCCeEEEEEEE
Q psy7036          75 DVIETDAGLYKVKAK   89 (254)
Q Consensus        75 ~~~~~d~G~Y~C~~~   89 (254)
                      +++.+|++.|.|...
T Consensus        84 sL~~eDtAvYYCAr~   98 (117)
T d1um5h1          84 SLTSEDSAVYYCARS   98 (117)
T ss_dssp             SCCGGGCEEEEEEEE
T ss_pred             ccCCCcceEEEEeec
Confidence            999999999999754

>d1ac6a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.23  E-value=3.2e-06  Score=51.12  Aligned_cols=74  Identities=14%  Similarity=0.181  Sum_probs=47.9

Q ss_pred             CCCeeeecCCCeEEEEEEEeeCCCCeEEEEECC--Ee---cc---------cCCcceEEEcCCCCceeeEEEEccCCCCC
Q psy7036         118 KPSIRQEDDGKRLLFECRIQADPAPTVIWSHSG--VQ---VK---------EDKRHKFSIDKDGHSYFASLEIIDVTIED  183 (254)
Q Consensus       118 ~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~--~~---~~---------~~~~~~~~~~~~~~~~~~~l~i~~~~~~d  183 (254)
                      .+..+.+.+|+.++|.|.........+.|||..  +.   +.         ...++......++.  ...|.|.++..+|
T Consensus         6 ~p~~~~~~~G~~vtl~C~~~~~~~~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~f~~~~~~~~~--~~~L~i~~~~~~D   83 (110)
T d1ac6a_           6 TEGQVALSEEDFLTIHCNYSASGYPALFWYVQYPGEGPQFLFRASRDKEKGSSRGFEATYNKEAT--SFHLQKASVQESD   83 (110)
T ss_dssp             CCSEEEEETTEEEEECEEEECSSCCEEEEEEECTTSCCEEEEEECSTTCEEEETTEEEECBTTTT--BCCEEEEEECGGG
T ss_pred             CCCeEEECCCCCEEEEEEecCCCCcceEEEEcCCCCceEEeeeeeeecccCCCCceeeeecCCCC--EEeeeecCcCcCC
Confidence            445677889999999998765555579999832  11   00         01111111122221  2479999999999


Q ss_pred             ceeEEEEEEc
Q psy7036         184 AGKYKVTAKN  193 (254)
Q Consensus       184 ~G~y~C~~~~  193 (254)
                      +|.|.|.+..
T Consensus        84 sa~YyCA~~~   93 (110)
T d1ac6a_          84 SAVYYCALSG   93 (110)
T ss_dssp             CEEEEEEEEE
T ss_pred             CcccceeecC
Confidence            9999998764

>d2ck0h1 b.1.1.1 (H:1-106) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=98.23  E-value=6.3e-06  Score=48.64  Aligned_cols=73  Identities=12%  Similarity=0.227  Sum_probs=46.1

Q ss_pred             CceeecCCCeEEEEEEEeeCC--CCceEEEeC--CEE------eee-----------CCcceEEEeecCCcceEEEEEEe
Q psy7036          16 QLRQEDEGNRLIFECQLLCNP--KPDIVWFRG--ETQ------LSE-----------DTRTVMKTTPIGTNKYLVALELD   74 (254)
Q Consensus        16 ~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~--~~~------~~~-----------~~~~~~~~~~~~~~~~~~~l~i~   74 (254)
                      ....+.+|++++|+|.+.|..  ...+.|+|.  |+.      +..           .-+.++....+.. .-...|.|.
T Consensus         8 G~~~vkPG~Sl~LsC~~SG~t~~~~~~~WvRQ~PGkglEw~g~i~~~~~~~~~~ya~~~kgR~tiS~D~s-~~t~~L~i~   86 (109)
T d2ck0h1           8 GGGLVQPRGSLKLSCAASGFTFNTDAMNWVRQAPGKGLEWVARIRSKGFNFATYYADSVRDRFTISRDDS-QSMLYLQMN   86 (109)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECCGGGTTCEEECTTTTTTEEEEEETT-TTEEEEEEC
T ss_pred             CCCeECCCCCeEEEEEECCCcccccccccceeCCCcceecccccccccccccceeccccccCceeccccc-cceeEeccc
Confidence            345789999999999998743  456889872  211      111           0111222222221 222369999


Q ss_pred             ccCCCCCeEEEEEEE
Q psy7036          75 DVIETDAGLYKVKAK   89 (254)
Q Consensus        75 ~~~~~d~G~Y~C~~~   89 (254)
                      +++.+|++.|.|.-.
T Consensus        87 sL~~eDTAvYYCAr~  101 (109)
T d2ck0h1          87 NLKTEDTGIYYCVRG  101 (109)
T ss_dssp             SCCGGGCEEEEEEEE
T ss_pred             CCCHhHCEEEEEEEc
Confidence            999999999999754

>d1dn0b1 b.1.1.1 (B:1-120) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=98.23  E-value=7.3e-06  Score=49.36  Aligned_cols=71  Identities=14%  Similarity=0.234  Sum_probs=45.2

Q ss_pred             eeecCCCeEEEEEEEeeCC--CCceEEEeC--CEE------ee--------eCCcceEEEeecCCcceEEEEEEeccCCC
Q psy7036          18 RQEDEGNRLIFECQLLCNP--KPDIVWFRG--ETQ------LS--------EDTRTVMKTTPIGTNKYLVALELDDVIET   79 (254)
Q Consensus        18 ~~v~~g~~v~l~C~~~~~~--~~~v~W~~~--~~~------~~--------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~   79 (254)
                      ..+.+|++++|+|.+.|..  ...+.|+|.  |+.      +.        ..-+.++....+.. .....|.|.+++.+
T Consensus        10 ~~vkPG~sl~LsC~~SG~~~~~y~~~W~RQ~PGkglewv~~i~~~~~~~y~~~~kgRftiS~D~s-~nt~~L~i~~l~~e   88 (120)
T d1dn0b1          10 GLLKPSETLSLTCAVYGGSFSDYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDTS-KNQFSLKLSSVTAA   88 (120)
T ss_dssp             CEECTTSCEEEEEEEESSCCSSCCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEETT-TTEEEEEECSCCGG
T ss_pred             cEECCCCCEEEEEEEccccCccCcceeeeECCCccceeeeeccccccchhccceeeeeEEeccCc-hheecccccccccc
Confidence            4688999999999998854  456889873  211      11        11112232222221 22336999999999


Q ss_pred             CCeEEEEEEE
Q psy7036          80 DAGLYKVKAK   89 (254)
Q Consensus        80 d~G~Y~C~~~   89 (254)
                      |++.|.|...
T Consensus        89 DtA~YYCAr~   98 (120)
T d1dn0b1          89 DTAVYYCARP   98 (120)
T ss_dssp             GCEEEEEEEC
T ss_pred             cccEEEEEee
Confidence            9999999543

>d1h5ba_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.23  E-value=4.4e-06  Score=50.77  Aligned_cols=76  Identities=22%  Similarity=0.389  Sum_probs=47.4

Q ss_pred             CCeeeecCCCeEEEEEEEeeCCCCeEEEEECC--Eec----ccC------CcceEEEcCCCCceeeEEEEccCCCCCcee
Q psy7036         119 PSIRQEDDGKRLLFECRIQADPAPTVIWSHSG--VQV----KED------KRHKFSIDKDGHSYFASLEIIDVTIEDAGK  186 (254)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~--~~~----~~~------~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~  186 (254)
                      +..+.+.+|+.++|.|..... ...+.||+..  ...    ...      ....... .......+.|.|.+++.+|+|.
T Consensus         8 P~~~~v~~G~~vtl~C~~~~~-~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~L~I~~~~~~Dsa~   85 (113)
T d1h5ba_           8 PSALSLHEGTDSALRCNFTTT-MRSVQWFRQNSRGSLISLFYLASGTKENGRLKSAF-DSERARYSTLHIRDAQLEDSGT   85 (113)
T ss_dssp             CSEEEEETTCCEEEEEEESSC-CSEEEEEEECTTSCEEEEEEESSSEEEETTEEEEC-CSSSSSEEEEEECSCCGGGCEE
T ss_pred             CCEEEEcCCCCEEEEEEEecC-CccceEEEeecccceEEEEEeeeeeccccccceEE-eecCCceeEEEECCCCHhHCEE
Confidence            456678899999999997543 3468999832  110    000      0000001 1111123579999999999999


Q ss_pred             EEEEEEcCCC
Q psy7036         187 YKVTAKNELG  196 (254)
Q Consensus       187 y~C~~~~~~~  196 (254)
                      |.|.+....+
T Consensus        86 YyCa~~~~~~   95 (113)
T d1h5ba_          86 YFCAAEASSG   95 (113)
T ss_dssp             EEEEEECSSS
T ss_pred             EEEEecCCCC
Confidence            9999876543

>d1rzfl2 b.1.1.2 (L:109-210) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.22  E-value=6.6e-07  Score=53.46  Aligned_cols=69  Identities=16%  Similarity=0.160  Sum_probs=45.1

Q ss_pred             CCeEEEEEEEeeCCC--CeEEEEECCEecccCCc-ceEEEcCCC-CceeeEEEEccCCCCCceeEEEEEEcCC
Q psy7036         127 GKRLLFECRIQADPA--PTVIWSHSGVQVKEDKR-HKFSIDKDG-HSYFASLEIIDVTIEDAGKYKVTAKNEL  195 (254)
Q Consensus       127 g~~~~l~C~~~~~~~--~~~~W~~~~~~~~~~~~-~~~~~~~~~-~~~~~~l~i~~~~~~d~G~y~C~~~~~~  195 (254)
                      +..+.|.|.+.++.+  ..+.|.+||..+..... .......++ +...+.|.|..-.......|+|.+.+..
T Consensus        20 ~~~~tL~C~v~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~w~~~~~ytC~V~H~~   92 (102)
T d1rzfl2          20 ANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEG   92 (102)
T ss_dssp             TTCEEEEEEEEEEBSSCCEEEEEETTEECCSSEEECCCEECTTSCEEEEEEEEECHHHHHHSSCEEEEEEETT
T ss_pred             CCcEEEEEEEEeeCCCCeEEEEEECCEECCCCEEeCCcEECCCCEEEEEEEEEECHHHhCCCCEEEEEEEECC
Confidence            566899999998543  36999999998764322 112223333 3445677776554444557999999864

>d2fbjh1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=98.22  E-value=1.4e-05  Score=47.85  Aligned_cols=75  Identities=16%  Similarity=0.165  Sum_probs=47.3

Q ss_pred             ceeecCCCeEEEEEEEeeCC--CCceEEEeC--CEE------eee---------CCcceEEEeecCCcceEEEEEEeccC
Q psy7036          17 LRQEDEGNRLIFECQLLCNP--KPDIVWFRG--ETQ------LSE---------DTRTVMKTTPIGTNKYLVALELDDVI   77 (254)
Q Consensus        17 ~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~--~~~------~~~---------~~~~~~~~~~~~~~~~~~~l~i~~~~   77 (254)
                      ...+.+|++++|+|.+.|..  ...+.|+|.  |+.      +..         .-+.++....+. ..-...|.|.+++
T Consensus         9 ~~~vkpg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglEwv~~i~~~~~~~~Y~~s~kgRftiSrD~-s~nt~~L~~~sL~   87 (118)
T d2fbjh1           9 GGLVQPGGSLKLSCAASGFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDN-AKNSLYLQMSKVR   87 (118)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECS-SSCEEEEEECSCC
T ss_pred             CceECCCCCEEEEEEECCccccCCceeeeeecCCcceeeeeecCcccccccccccceeeEEEeecC-ccceeeccccccC
Confidence            34789999999999998854  346788862  211      111         111222222222 1223469999999


Q ss_pred             CCCCeEEEEEEEcCC
Q psy7036          78 ETDAGLYKVKAKNKM   92 (254)
Q Consensus        78 ~~d~G~Y~C~~~~~~   92 (254)
                      .+|++.|.|......
T Consensus        88 ~eDtAvYYCAr~~~~  102 (118)
T d2fbjh1          88 SEDTALYYCARLHYY  102 (118)
T ss_dssp             GGGCEEEEEEEEETT
T ss_pred             CCcceEEEeeEecCC
Confidence            999999999865433

>d1ieha_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=98.21  E-value=2.1e-05  Score=47.97  Aligned_cols=87  Identities=11%  Similarity=0.163  Sum_probs=52.7

Q ss_pred             ceeecCCCeEEEEEEEeeCC--CCceEEEeC--CEE------ee---------eCCcceEEEeecCCcceEEEEEEeccC
Q psy7036          17 LRQEDEGNRLIFECQLLCNP--KPDIVWFRG--ETQ------LS---------EDTRTVMKTTPIGTNKYLVALELDDVI   77 (254)
Q Consensus        17 ~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~--~~~------~~---------~~~~~~~~~~~~~~~~~~~~l~i~~~~   77 (254)
                      ...+.+|++++|+|.+.|..  ...+.|+|.  |+-      +.         ..-+.++....+. ......|.|.+++
T Consensus         9 ~~lvkPG~Sl~LsC~~SG~s~~~y~~~WvRQ~PGkgLEWlg~I~~~~~~~~Ya~s~kgRfTiSrD~-s~~t~yL~i~~L~   87 (135)
T d1ieha_           9 GGLVQPGGSLRVSCAASGFTFSSYHMAWVRQAPGKGLEWVSTINPGDGSTYYADSVKGRFTISRDN-AKNTLYLQMNSLK   87 (135)
T ss_dssp             CCEECTTCEEEEEEEEESSCTTTSCEEEEEECSSCCCEEEEEECSSSCCEEECSTTTTTEEEEECT-TTCCEEEEEESCC
T ss_pred             CceECCCCCeEEEEEEcCCCCcCCceeccccCCCCceeeeeccCCccccccccccceEeEEEeccC-CCceeEecEeeeC
Confidence            34688999999999998743  456889863  211      11         1111223322222 1223379999999


Q ss_pred             CCCCeEEEEEEEcCCCce--EEEEEEEEe
Q psy7036          78 ETDAGLYKVKAKNKMGEV--AASINLNFS  104 (254)
Q Consensus        78 ~~d~G~Y~C~~~~~~~~~--~~~~~l~v~  104 (254)
                      .+|.+.|.|......+.+  -....|+|.
T Consensus        88 ~eDTAvYYCAr~~~~~~d~WGqGT~VTVs  116 (135)
T d1ieha_          88 SEDTAVYYCAKYSGGALDAWGQGTQVTVS  116 (135)
T ss_dssp             SSSCEEEEEEEBSSSSBCCCSCCEEEEEC
T ss_pred             cccceeeEEEEecCCccceeCCCEEEEEE
Confidence            999999999765433221  234556664

>d1mjuh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.21  E-value=9.3e-06  Score=48.36  Aligned_cols=76  Identities=14%  Similarity=0.213  Sum_probs=47.7

Q ss_pred             eCCCceeecCCCeEEEEEEEeeCC--CCceEEEeC--CE------Eeee---------CCcceEEEeecCCcceEEEEEE
Q psy7036          13 QKPQLRQEDEGNRLIFECQLLCNP--KPDIVWFRG--ET------QLSE---------DTRTVMKTTPIGTNKYLVALEL   73 (254)
Q Consensus        13 ~~~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~--~~------~~~~---------~~~~~~~~~~~~~~~~~~~l~i   73 (254)
                      .++....+.+|+++.|+|.+.|..  ...+.|+|.  |+      .+..         .-+.++....+. ......|.+
T Consensus         5 ~esg~~~~kPg~sl~LsC~~SG~s~~~~~~~WvRQ~PGkgLEw~g~i~~~~~~~~ya~s~kgR~tiS~D~-s~~tvyL~~   83 (116)
T d1mjuh1           5 QQPGAELVKPGASVKLSCKASGYTFTNYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDT-SSSTAYMQL   83 (116)
T ss_dssp             ECCSEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEET-TTTEEEEEE
T ss_pred             eeECCcEECCCCCEEEEEEEccCccccCceEeeeeCCCcceeeeeecCccccccccccccceeeeEeccc-ccceeEecc
Confidence            345566889999999999998744  456788872  21      1111         111122222211 122336899


Q ss_pred             eccCCCCCeEEEEEEE
Q psy7036          74 DDVIETDAGLYKVKAK   89 (254)
Q Consensus        74 ~~~~~~d~G~Y~C~~~   89 (254)
                      .+++.+|.+.|.|.-.
T Consensus        84 ~sL~~eDtAvYYCAr~   99 (116)
T d1mjuh1          84 SSLTSDDSAVYYCANK   99 (116)
T ss_dssp             CSCCGGGCEEEEEEEE
T ss_pred             cccCCCCceEEEEccc
Confidence            9999999999999643

>d1l6xa2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.21  E-value=1.6e-06  Score=51.76  Aligned_cols=72  Identities=14%  Similarity=0.250  Sum_probs=47.4

Q ss_pred             CCeEEEEEEEeeCCC--CeEEEEECCEecccCCcceEEEcCCC-CceeeEEEEccCCCCCceeEEEEEEcCCCcc
Q psy7036         127 GKRLLFECRIQADPA--PTVIWSHSGVQVKEDKRHKFSIDKDG-HSYFASLEIIDVTIEDAGKYKVTAKNELGES  198 (254)
Q Consensus       127 g~~~~l~C~~~~~~~--~~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~  198 (254)
                      ++.++|.|.+.++.+  ..+.|.++|...............++ +...+.|.|..-.......|+|.+.+.....
T Consensus        19 ~~~~tL~Clv~gf~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~w~~g~~ytC~V~H~~l~~   93 (102)
T d1l6xa2          19 KNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEALHN   93 (102)
T ss_dssp             SSEEEEEEEEEEEBSSCCEEEEEETTEEECCEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTTSGG
T ss_pred             CCceEEEEEEEEeECCCCEEEEEECCEECCCeEEcceEECCCCCEEEEEEEEECHHHcCCCCEEEEEEEeCCCCC
Confidence            567899999998643  47999999987654322222233333 3445677777655445558999999875543

>d1mjul1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=98.21  E-value=5.8e-06  Score=50.08  Aligned_cols=72  Identities=19%  Similarity=0.273  Sum_probs=45.6

Q ss_pred             CCCeeeecCCCeEEEEEEEeeCC-----CCeEEEEECC--Ee----c------ccCCcceEEEcCCCCceeeEEEEccCC
Q psy7036         118 KPSIRQEDDGKRLLFECRIQADP-----APTVIWSHSG--VQ----V------KEDKRHKFSIDKDGHSYFASLEIIDVT  180 (254)
Q Consensus       118 ~~~~~~~~~g~~~~l~C~~~~~~-----~~~~~W~~~~--~~----~------~~~~~~~~~~~~~~~~~~~~l~i~~~~  180 (254)
                      .+..+.+.+|++++|.|...+..     ...+.||+..  ..    +      ......++.....+.  ...|.|.+++
T Consensus         7 ~p~slsv~~G~svtL~C~~s~~~~~~~~~~~i~WYrq~~g~~~~~liy~~~~~~~~~~~r~~~~~s~~--~~~L~Is~~~   84 (112)
T d1mjul1           7 AAPSVPVTPGESVSISCRSSKSLLHSNGNTYLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSGSGSGT--AFTLRISRVE   84 (112)
T ss_dssp             CCSEEEECTTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEECSS--EEEEEESSCC
T ss_pred             cCCEEEECCCCCEEEEEEECCCCccCCCCceeEEEECCCCCcEEEEEEeCCcccCCCCCcEEeecCCC--EEEEEECCcc
Confidence            34567788999999999876531     3358899732  11    0      011111222222222  2479999999


Q ss_pred             CCCceeEEEEE
Q psy7036         181 IEDAGKYKVTA  191 (254)
Q Consensus       181 ~~d~G~y~C~~  191 (254)
                      .+|++.|.|..
T Consensus        85 ~~DsAvYyCa~   95 (112)
T d1mjul1          85 AEDVGVYYCLQ   95 (112)
T ss_dssp             GGGCEEEEEEE
T ss_pred             ccCCceEEEEe
Confidence            99999999954

>d1ncna_ b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD86 (b7-2), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.21  E-value=1e-05  Score=48.85  Aligned_cols=24  Identities=21%  Similarity=0.414  Sum_probs=21.1

Q ss_pred             eEEEEccCCCCCceeEEEEEEcCC
Q psy7036         172 ASLEIIDVTIEDAGKYKVTAKNEL  195 (254)
Q Consensus       172 ~~l~i~~~~~~d~G~y~C~~~~~~  195 (254)
                      .+|.|.+++.+|+|.|.|.+....
T Consensus        69 ~sL~I~~v~~~D~G~Y~C~V~~~~   92 (110)
T d1ncna_          69 WTLRLHNLQIKDKGLYQCIIHHKK   92 (110)
T ss_dssp             TEEEECSCCGGGCEEEEEEEEEEC
T ss_pred             EEEEECCCChhHCEEEEEEEEecC
Confidence            379999999999999999997544

>d2fx7l1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 3.2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 3.2 [TaxId: 9606]

Probab=98.20  E-value=3.3e-06  Score=50.90  Aligned_cols=74  Identities=19%  Similarity=0.286  Sum_probs=46.8

Q ss_pred             cCCCeeeecCCCeEEEEEEEeeC-CCCeEEEEECC--E---ecc-------cCCcceEEEcCCCCceeeEEEEccCCCCC
Q psy7036         117 KKPSIRQEDDGKRLLFECRIQAD-PAPTVIWSHSG--V---QVK-------EDKRHKFSIDKDGHSYFASLEIIDVTIED  183 (254)
Q Consensus       117 ~~~~~~~~~~g~~~~l~C~~~~~-~~~~~~W~~~~--~---~~~-------~~~~~~~~~~~~~~~~~~~l~i~~~~~~d  183 (254)
                      ..+..+.+.+|+.++|.|..... ....+.||+..  .   .+.       .....++.....+.  .+.|.|.+++.+|
T Consensus         6 Q~P~~~~v~~G~tv~l~C~~~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~s~~~~~~--~~~L~I~~~~~~D   83 (108)
T d2fx7l1           6 QSPGTQSLSPGERATLSCRASQSVGNNKLAWYQQRPGQAPRLLIYGASSRPSGVADRFSGSGSGT--DFTLTISRLEPED   83 (108)
T ss_dssp             CSSSEEEECTTCCEEEEEEESSCCGGGCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETT--EEEEEESSCCGGG
T ss_pred             eeCCeEEECCCCCEEEEEEeecCCCCccceeEeccccCCCEEEEeeecccccCCccceeeecCCC--EEEEEehHheecc
Confidence            34566778899999999987543 23458899742  1   110       01111222221121  2479999999999


Q ss_pred             ceeEEEEEE
Q psy7036         184 AGKYKVTAK  192 (254)
Q Consensus       184 ~G~y~C~~~  192 (254)
                      +|.|.|.+.
T Consensus        84 sa~YyCa~~   92 (108)
T d2fx7l1          84 FAVYYCQQY   92 (108)
T ss_dssp             CSEEEEEEC
T ss_pred             cEEEeeecC
Confidence            999999864

>d1u9ka_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.20  E-value=3.3e-06  Score=50.84  Aligned_cols=75  Identities=17%  Similarity=0.351  Sum_probs=48.1

Q ss_pred             eeeecCCCeEEEEEEEeeC--CCCeEEEEEC--CEe----cccC-C--------cceEEEcCCCCceeeEEEEccCCCCC
Q psy7036         121 IRQEDDGKRLLFECRIQAD--PAPTVIWSHS--GVQ----VKED-K--------RHKFSIDKDGHSYFASLEIIDVTIED  183 (254)
Q Consensus       121 ~~~~~~g~~~~l~C~~~~~--~~~~~~W~~~--~~~----~~~~-~--------~~~~~~~~~~~~~~~~l~i~~~~~~d  183 (254)
                      ...+.+|++++|.|...+.  ..-.+.|+|.  ++.    +... .        ..++....+.......|+|.+++.+|
T Consensus         4 ~~~~~eG~svtl~C~ys~~~~~~~~~~W~rq~pg~~~~~li~~~~~~~~~~~~~~gR~sis~d~~~~~~~lti~~L~~eD   83 (110)
T d1u9ka_           4 RYDLVEGQTLTVKCPFNIMKYANSQKAWQRLPDGKEPLTLVVTQRPFTRPSEVHMGKFTLKHDPSEAMLQVQMTDLQVTD   83 (110)
T ss_dssp             EEEECTTCCEEEEEECCHHHHTTSEEEEEECCTTSCCEEEEECCSSTTSCEEEEETTEEEEEEGGGTEEEEEECSCCGGG
T ss_pred             CCcCCCCCCEEEEEEECCCCccCCcEEEEEECCCCCEEEEEecCCCceeechhhCcEEEEEEECCCCEEEEEECccccCC
Confidence            4567889999999997653  3446889984  211    1100 0        11233333333334579999999999


Q ss_pred             ceeEEEEEEcCC
Q psy7036         184 AGKYKVTAKNEL  195 (254)
Q Consensus       184 ~G~y~C~~~~~~  195 (254)
                      +|.|.|......
T Consensus        84 sa~YyCa~~~~~   95 (110)
T d1u9ka_          84 SGLYRCVIYHPP   95 (110)
T ss_dssp             CEEEEEEEECTT
T ss_pred             CEEEEEEEeCCC
Confidence            999999986543

>d1k5na1 b.1.1.2 (A:182-276) Class I MHC, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.20  E-value=4.6e-06  Score=48.88  Aligned_cols=68  Identities=16%  Similarity=0.253  Sum_probs=42.4

Q ss_pred             CCCeEEEEEEEeeC-C-CCceEEEeCCEEeeeCCcce-EEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcCC
Q psy7036          22 EGNRLIFECQLLCN-P-KPDIVWFRGETQLSEDTRTV-MKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKM   92 (254)
Q Consensus        22 ~g~~v~l~C~~~~~-~-~~~v~W~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~   92 (254)
                      .+..++|.|.+.|. | ...|+|++||..+....... .....++.....+.|.+.   ..+...|+|+|.+..
T Consensus        14 ~~~~~~L~C~~~gFyP~~i~vtW~~~g~~~~~~~~~~~~~~~~~~~~~~~s~l~v~---~~~~~~ytC~V~H~~   84 (95)
T d1k5na1          14 SDHEATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDRTFQKWAAVVVP---SGEEQRYTCHVQHEG   84 (95)
T ss_dssp             ETTEEEEEEEEEEEBSSCCEEEEEETTEECGGGCEECCCEECSSSCEEEEEEEEEE---TTCGGGEEEEEECTT
T ss_pred             CCCCEEEEEEEEeEeCCCCEEEEEECCEEcCCCceeccEEcCCCCeEEEEEEEEEE---cCCCCEEEEEEEECc
Confidence            35689999999884 4 45789999999876543221 112222222333344443   445568999999754

>d1a2yb_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 5 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 5 [TaxId: 10090]

Probab=98.20  E-value=1.3e-05  Score=47.84  Aligned_cols=73  Identities=12%  Similarity=0.175  Sum_probs=46.2

Q ss_pred             ceeecCCCeEEEEEEEeeCC--CCceEEEeC--CEE------ee--------eCCcceEEEeecCCcceEEEEEEeccCC
Q psy7036          17 LRQEDEGNRLIFECQLLCNP--KPDIVWFRG--ETQ------LS--------EDTRTVMKTTPIGTNKYLVALELDDVIE   78 (254)
Q Consensus        17 ~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~--~~~------~~--------~~~~~~~~~~~~~~~~~~~~l~i~~~~~   78 (254)
                      ...+.+|++++|+|.+.|..  ...+.|+|.  |+-      +.        ..-+.++....+ .......|.|.+++.
T Consensus         9 ~~~vkPg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewlg~i~~~~~~~y~~s~kgR~tis~D-~s~n~~~L~~~~l~~   87 (116)
T d1a2yb_           9 PGLVAPSQSLSITCTVSGFSLTGYGVNWVRQPPGKGLEWLGMIWGDGNTDYNSALKSRLSISKD-NSKSQVFLKMNSLHT   87 (116)
T ss_dssp             CSEECTTSCEEEEEEEESSCTTSSEEEEEEECTTSCCEEEEEECTTSCEEECTTTGGGEEEEEE-GGGTEEEEEECSCCG
T ss_pred             CceECCCCCeEEEEEEcccccCCCCCccceECCCcceeeeeecCccccceecccccccceEecc-CCCceEEcceeeeee
Confidence            34688999999999998753  456889873  111      11        111122222221 112233699999999


Q ss_pred             CCCeEEEEEEEc
Q psy7036          79 TDAGLYKVKAKN   90 (254)
Q Consensus        79 ~d~G~Y~C~~~~   90 (254)
                      +|.+.|.|.-..
T Consensus        88 eDTAvYYCAr~~   99 (116)
T d1a2yb_          88 DDTARYYCARER   99 (116)
T ss_dssp             GGCEEEEEEEES
T ss_pred             ccceEEEEEEeC
Confidence            999999997653

>d1ucta2 b.1.1.4 (A:101-196) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.20  E-value=6.7e-06  Score=48.17  Aligned_cols=73  Identities=12%  Similarity=0.123  Sum_probs=48.4

Q ss_pred             CccccCCCeeeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEE
Q psy7036         113 PTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAK  192 (254)
Q Consensus       113 ~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~  192 (254)
                      |.+...+. -.+..|++++|.|.........+.|+|+|......    . ....   ..+.+.|.+++.+|+|.|+|...
T Consensus         6 P~Lsa~P~-~~V~~G~~VTL~C~~~~~~~~~f~L~k~g~~~~~~----~-~~~~---~~a~F~l~~v~~~~~G~Y~C~y~   76 (96)
T d1ucta2           6 PFLSADRG-LVLMPGENISLTCSSAHIPFDRFSLAKEGELSLPQ----H-QSGE---HPANFSLGPVDLNVSGIYRCYGW   76 (96)
T ss_dssp             CEEEESSC-SEECTTCCCEEEEECSSSCCSEEEEEETTCSSCCS----E-EECS---SSEEEECCSCCGGGCEEEEEEEE
T ss_pred             CEEEEeCC-CccCCCCeEEEEEeCCCCCceEEEEEECCcccceE----E-cCCC---cccEEEEeccccccCcEEEEEEE
Confidence            33334443 35778999999998533334578999988532211    1 1111   11479999999999999999886


Q ss_pred             cC
Q psy7036         193 NE  194 (254)
Q Consensus       193 ~~  194 (254)
                      ..
T Consensus        77 ~~   78 (96)
T d1ucta2          77 YN   78 (96)
T ss_dssp             CT
T ss_pred             cC
Confidence            54

>d1j05b_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.19  E-value=1.2e-05  Score=48.72  Aligned_cols=72  Identities=11%  Similarity=0.226  Sum_probs=46.0

Q ss_pred             CCceeecCCCeEEEEEEEeeCC--CCceEEEeC--CEE---e---ee-----------CCcceEEEeecCCcceEEEEEE
Q psy7036          15 PQLRQEDEGNRLIFECQLLCNP--KPDIVWFRG--ETQ---L---SE-----------DTRTVMKTTPIGTNKYLVALEL   73 (254)
Q Consensus        15 ~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~--~~~---~---~~-----------~~~~~~~~~~~~~~~~~~~l~i   73 (254)
                      .....+.+|++++|.|.+.|..  ...+.|+|.  |+.   +   ..           ..++.+.....   .....|.|
T Consensus         7 sg~~~~kpG~sv~LsC~~SG~~~s~~~~~W~RQ~PGkgle~l~~i~~~~~~~~y~~~~kgR~tis~D~s---~~t~~L~i   83 (121)
T d1j05b_           7 SGAELVEPGASVKLSCTASGFNIKDTYMHWVKQRPEQGLEWIGRIDPANGNSKYVPKFQGKATITADTS---SNTAYLQL   83 (121)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTCCCEEEEEEETTTTEEEECGGGTTTEEEEEEGG---GTEEEEEE
T ss_pred             ECCceECCCCCEEEEEEEecCCCCCCCcceeeECCCCccccccccCCcCCccccchhhccceEEEeecC---Cceeeecc
Confidence            3445789999999999998743  456889873  221   1   11           11222222111   11236999


Q ss_pred             eccCCCCCeEEEEEEE
Q psy7036          74 DDVIETDAGLYKVKAK   89 (254)
Q Consensus        74 ~~~~~~d~G~Y~C~~~   89 (254)
                      .+++.+|++.|.|...
T Consensus        84 ~~L~~eDtAvYYCAr~   99 (121)
T d1j05b_          84 TSLTSEDTAVYYCAPF   99 (121)
T ss_dssp             CSCCGGGCEEEEEEEE
T ss_pred             cccCcCcceEEEeEee
Confidence            9999999999999764

>d1q9ra1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]

Probab=98.19  E-value=3.9e-06  Score=50.98  Aligned_cols=72  Identities=19%  Similarity=0.331  Sum_probs=44.7

Q ss_pred             CCeeeecCCCeEEEEEEEeeCC------CCeEEEEEC--CEec----------ccCCcceEEEcCCCCceeeEEEEccCC
Q psy7036         119 PSIRQEDDGKRLLFECRIQADP------APTVIWSHS--GVQV----------KEDKRHKFSIDKDGHSYFASLEIIDVT  180 (254)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~~------~~~~~W~~~--~~~~----------~~~~~~~~~~~~~~~~~~~~l~i~~~~  180 (254)
                      +..+.+.+|+.++|.|...+..      ..-+.||+.  ++..          ......++....+..  ...|.|.+++
T Consensus         8 P~~v~~~~G~svtL~C~~s~~~~~~~~~~~~~~WYrq~~g~~p~ll~~~~~~~~~~~~~~~s~~~s~~--~~~L~I~~l~   85 (113)
T d1q9ra1           8 PSSLAVSAGEKVTMSCKSSQSLLNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGSGT--DFTLTITSVQ   85 (113)
T ss_dssp             CSEEEEETTSCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETT--EEEEEESSCC
T ss_pred             CCEEEECCCCCEEEEEEECCCcccCCCCCcceEEEecCCCCCCEEEEecccccCCCCCccEEEeCCCC--eEeEEecccc
Confidence            4567788999999999865321      124899984  2110          011111222222222  2479999999


Q ss_pred             CCCceeEEEEEE
Q psy7036         181 IEDAGKYKVTAK  192 (254)
Q Consensus       181 ~~d~G~y~C~~~  192 (254)
                      .+|+|.|.|.+.
T Consensus        86 ~~Dsa~YyCA~~   97 (113)
T d1q9ra1          86 AEDLAVYYCKQS   97 (113)
T ss_dssp             GGGCEEEEEEEC
T ss_pred             cCCCeEEEeccc
Confidence            999999999864

>d1mjuh2 b.1.1.2 (H:114-230) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.19  E-value=3.9e-06  Score=49.94  Aligned_cols=85  Identities=12%  Similarity=0.144  Sum_probs=47.6

Q ss_pred             CCCCeeE-eCCCceeecCCCeEEEEEEEee-CC-CCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCe
Q psy7036           6 DFAPSFT-QKPQLRQEDEGNRLIFECQLLC-NP-KPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAG   82 (254)
Q Consensus         6 ~~~p~~~-~~~~~~~v~~g~~v~l~C~~~~-~~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G   82 (254)
                      ..+|.+- ..|... ...++.++|.|.+.| .| ...|+|.+++......  .......++.....+.|.|..... +.+
T Consensus         3 ~s~PsV~~l~p~~~-~~~~~~~~l~Cl~~gf~P~~i~v~W~~~~~~~~~~--~~~~~~~~g~ys~~S~L~v~~~~w-~~~   78 (102)
T d1mjuh2           3 TTAPSVYPLAPVCG-DTSGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVH--TFPAVLQSDLYTLSSSVTVTSSTW-PSQ   78 (102)
T ss_dssp             CBCCEEEEECCCC-------CEEEEEEEEEEBSSCCEEEEGGGTBCTTEE--ECCCEEETTEEEEEEEEEECTTTT-TTS
T ss_pred             ccCCEEEEECCCcc-ccCCCcEEEEEEEeeeeCCCeEEEECcCCccCCeE--ecccccCCCCEEEEEEEEEehhHc-CCc
Confidence            3466653 344332 345789999999988 34 4579998776432110  111112334444556777776655 357


Q ss_pred             EEEEEEEcCCCc
Q psy7036          83 LYKVKAKNKMGE   94 (254)
Q Consensus        83 ~Y~C~~~~~~~~   94 (254)
                      .|+|.|.+....
T Consensus        79 ~ytC~V~H~~~~   90 (102)
T d1mjuh2          79 SITCNVAHPASS   90 (102)
T ss_dssp             CCEEEEEEGGGT
T ss_pred             eEEEEEEECCCC
Confidence            899999986654

>d2rhea_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=98.19  E-value=6.6e-06  Score=49.89  Aligned_cols=72  Identities=28%  Similarity=0.389  Sum_probs=46.4

Q ss_pred             CeeeecCCCeEEEEEEEeeCC--CCeEEEEECCE--e---cc-------cCCcceEEEcCCCCceeeEEEEccCCCCCce
Q psy7036         120 SIRQEDDGKRLLFECRIQADP--APTVIWSHSGV--Q---VK-------EDKRHKFSIDKDGHSYFASLEIIDVTIEDAG  185 (254)
Q Consensus       120 ~~~~~~~g~~~~l~C~~~~~~--~~~~~W~~~~~--~---~~-------~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G  185 (254)
                      ..+.+.+|+.++|.|...+..  ...+.||+...  .   +.       .....++....+..  ...|.|.+++.+|++
T Consensus         8 ps~~v~~G~svtL~C~~s~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~L~I~~v~~~DsA   85 (114)
T d2rhea_           8 PSASGTPGQRVTISCTGSATDIGSNSVIWYQQVPGKAPKLLIYYNDLLPSGVSDRFSASKSGT--SASLAISGLESEDEA   85 (114)
T ss_dssp             SEEEECTTCCEEEEEECCTTTTTTSCEEEEECCTTSCCEEEEBTTTBCCTTCCTTEEEEEETT--EEEEEESSCCGGGCE
T ss_pred             CcEEeCCCCCEEEEEEECCccccCCcccceeeecccceEEEEEEeeeeccCCCCcceecCCCC--eeeeEecccCcccCc
Confidence            457788999999999976543  34689997421  1   10       01111122221111  248999999999999


Q ss_pred             eEEEEEEc
Q psy7036         186 KYKVTAKN  193 (254)
Q Consensus       186 ~y~C~~~~  193 (254)
                      .|.|.+..
T Consensus        86 ~YyCA~~~   93 (114)
T d2rhea_          86 DYYCAAWN   93 (114)
T ss_dssp             EEEEEEEE
T ss_pred             eEEEeecC
Confidence            99998764

>d1indh1 b.1.1.1 (H:1-114) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=98.19  E-value=1e-05  Score=48.13  Aligned_cols=72  Identities=15%  Similarity=0.236  Sum_probs=45.4

Q ss_pred             ceeecCCCeEEEEEEEeeCC--CCceEEEeC--CEE------eee---------CCcceEEEeecCCcceEEEEEEeccC
Q psy7036          17 LRQEDEGNRLIFECQLLCNP--KPDIVWFRG--ETQ------LSE---------DTRTVMKTTPIGTNKYLVALELDDVI   77 (254)
Q Consensus        17 ~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~--~~~------~~~---------~~~~~~~~~~~~~~~~~~~l~i~~~~   77 (254)
                      ...+.+|++++|+|.+.|..  ...+.|+|.  |+-      +..         .-+.++....+.. .-...|.|.+++
T Consensus         9 ~~~vkpG~sl~LsC~~SG~~~s~~~~~WvRQ~PGkglEwv~~i~~~~~~~~y~~s~kgRftiSrD~s-~nt~~L~~~~L~   87 (114)
T d1indh1           9 GDSVKPGGSLKLSCAASGFTLSGETMSWVRQTPEKRLEWVATTLSGGGFTFYSASVKGRFTISRDNA-QNNLYLQLNSLR   87 (114)
T ss_dssp             CCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECSTTCCEEECTTTTTTEEEEEETT-TTEEEEEECSCC
T ss_pred             CceECCCCCEEEEEEECccCccCCceeccccCCCCccEEeeecccccchhhhhhhheeeEEEeccCc-cceeeeeeeeec
Confidence            34688999999999998753  456789873  211      111         1112222222211 223369999999


Q ss_pred             CCCCeEEEEEEE
Q psy7036          78 ETDAGLYKVKAK   89 (254)
Q Consensus        78 ~~d~G~Y~C~~~   89 (254)
                      .+|++.|.|...
T Consensus        88 ~eDtAvYYCA~~   99 (114)
T d1indh1          88 SEDTALYFCASH   99 (114)
T ss_dssp             GGGCEEEEEECG
T ss_pred             cCcccEEEECCC
Confidence            999999999643

>d1cqka_ b.1.1.2 (A:) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.19  E-value=3.2e-06  Score=50.23  Aligned_cols=71  Identities=20%  Similarity=0.293  Sum_probs=47.0

Q ss_pred             CCeEEEEEEEeeC-C-CCeEEEEECCEecccCCcceEEEcCCC-CceeeEEEEccCCCCCceeEEEEEEcCCCc
Q psy7036         127 GKRLLFECRIQAD-P-APTVIWSHSGVQVKEDKRHKFSIDKDG-HSYFASLEIIDVTIEDAGKYKVTAKNELGE  197 (254)
Q Consensus       127 g~~~~l~C~~~~~-~-~~~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~  197 (254)
                      .+.+.|.|.+.++ | ...+.|.++|..+............++ +...+.|.|..-.......|+|.+.+....
T Consensus        18 ~~~~tL~C~v~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~w~~~~~ytC~V~H~~l~   91 (101)
T d1cqka_          18 KDLVSLTCMITDFFPEDITVEWQWNGQPAENYKNTQPIMDTDGSYFVYSKLNVQKSNWEAGNTFTCSVLHEGLH   91 (101)
T ss_dssp             SSEEEEEEEEEEEBSSCCEEEEEETTEECCSEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTTSG
T ss_pred             CCcEEEEEEEEEeECCCcEEEEEECCEEccCcEEeeeecCCCCcEEEEEEEEECHHHhCCCCEEEEEEEECCCC
Confidence            4568999999986 4 346999999988754322222233333 345677777655545566899999987543

>d2agjh1 b.1.1.1 (H:1-120) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=98.18  E-value=1.4e-05  Score=48.40  Aligned_cols=71  Identities=15%  Similarity=0.264  Sum_probs=45.2

Q ss_pred             eeecCCCeEEEEEEEeeCCC----CeEEEEEC--CEec--------------ccCCcceEEEcCCCCceeeEEEEccCCC
Q psy7036         122 RQEDDGKRLLFECRIQADPA----PTVIWSHS--GVQV--------------KEDKRHKFSIDKDGHSYFASLEIIDVTI  181 (254)
Q Consensus       122 ~~~~~g~~~~l~C~~~~~~~----~~~~W~~~--~~~~--------------~~~~~~~~~~~~~~~~~~~~l~i~~~~~  181 (254)
                      ..+.+|+.++|.|.+.|+..    ..+.|+|.  ++.+              ......++....+.......|.|.+++.
T Consensus        10 ~~v~PG~sv~LsC~~SG~s~ss~~~~~~WyRQ~Pg~~le~l~~i~~~~~~~~~~~~~gRft~s~d~s~~~~~L~i~~l~~   89 (120)
T d2agjh1          10 TLVKPTQTLTLTCTFSGFSLTTTGEGVGWIRQPPGKALEFLAFIYWNDAKRYNPSLQSRLTITKDASKKQVVLTLTNLDP   89 (120)
T ss_dssp             SBCCSSSEEEEEEEEESCCTTSSSCEEEEEEECTTSCCEEEEEEEGGGCEEECGGGCSSEEEECCTTTTEEEEEEESCCG
T ss_pred             eeECCCCCEEEEEEEcccCccCCCCeEeeccccccccceeeecccCCcccccchhhccccceecccccceeeeeEEeeee
Confidence            34667999999999887532    35789974  1111              0001123334333322335799999999


Q ss_pred             CCceeEEEEEE
Q psy7036         182 EDAGKYKVTAK  192 (254)
Q Consensus       182 ~d~G~y~C~~~  192 (254)
                      +|++.|.|...
T Consensus        90 eDsAvYyCAr~  100 (120)
T d2agjh1          90 VDTATYYCART  100 (120)
T ss_dssp             GGCEEEEEEEE
T ss_pred             ccceEEeeEec
Confidence            99999999744

>d1ypzf1 b.1.1.1 (F:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=98.18  E-value=8.7e-06  Score=49.88  Aligned_cols=74  Identities=14%  Similarity=0.211  Sum_probs=45.9

Q ss_pred             CeeeecCCCeEEEEEEEeeCC--CCeEEEEECC--E---ecc-----------cCCcceEEEcCCCCceeeEEEEccCCC
Q psy7036         120 SIRQEDDGKRLLFECRIQADP--APTVIWSHSG--V---QVK-----------EDKRHKFSIDKDGHSYFASLEIIDVTI  181 (254)
Q Consensus       120 ~~~~~~~g~~~~l~C~~~~~~--~~~~~W~~~~--~---~~~-----------~~~~~~~~~~~~~~~~~~~l~i~~~~~  181 (254)
                      ..+...+|+.++|.|...+..  ...+.||+..  +   -+.           .....++....+.....+.|.|.+++.
T Consensus         9 ~sv~~~~G~svtL~C~~~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~r~~~s~~~~~~~~~L~I~~l~~   88 (120)
T d1ypzf1           9 ISISRPRDETAQISCKVFIESFRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNPSASTSILTIYSLEE   88 (120)
T ss_dssp             SEEEEETTSCEEEEEEECCGGGGGCCEEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEECCTTTEEEEEECSCCG
T ss_pred             CEEEecCCCcEEEEEEEecccccCCcccEEEeCCcccccccccccccccceeeecccccccccccccccccccccccccc
Confidence            456677899999999876532  3458999831  1   110           011112222222222234799999999


Q ss_pred             CCceeEEEEEEc
Q psy7036         182 EDAGKYKVTAKN  193 (254)
Q Consensus       182 ~d~G~y~C~~~~  193 (254)
                      +|+|.|.|....
T Consensus        89 ~Dsa~YyCA~~~  100 (120)
T d1ypzf1          89 EDEAIYYCSYGE  100 (120)
T ss_dssp             GGCSEEEEEECC
T ss_pred             ccceeEEEEEcC
Confidence            999999997653

>d1ncwl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=98.18  E-value=6.9e-06  Score=49.67  Aligned_cols=72  Identities=19%  Similarity=0.265  Sum_probs=44.7

Q ss_pred             CCeeeecCCCeEEEEEEEeeCC-----CCeEEEEEC--CEe---c-------ccCCcceEEEcCCCCceeeEEEEccCCC
Q psy7036         119 PSIRQEDDGKRLLFECRIQADP-----APTVIWSHS--GVQ---V-------KEDKRHKFSIDKDGHSYFASLEIIDVTI  181 (254)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~~-----~~~~~W~~~--~~~---~-------~~~~~~~~~~~~~~~~~~~~l~i~~~~~  181 (254)
                      +..+.+.+|+.++|.|...+..     ..-+.||+.  |+.   +       ......++.....+.  ...|.|.+++.
T Consensus         8 P~sls~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~pg~~~~~l~~~~~~~~~g~~~~fs~~~~~~--~~~L~I~~~~~   85 (112)
T d1ncwl1           8 PKTISVTIGQPASISCKSSQRLLNSNGKTFLNWLLQRPGQSPKRLIYLGTKLDSGVPDRFTGSGSGT--DFTLKISRVEA   85 (112)
T ss_dssp             CSEEEEETTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETT--EEEEEESSCCG
T ss_pred             CCEEEECCCCCEEEEEEECcccccCCCCcccEEEEcCCCCceEEEEeccCcCCCCcCceEEeeCCCC--EEEEEECcccc
Confidence            4567788999999999865432     234889973  111   0       011111222222222  24799999999


Q ss_pred             CCceeEEEEEE
Q psy7036         182 EDAGKYKVTAK  192 (254)
Q Consensus       182 ~d~G~y~C~~~  192 (254)
                      +|++.|.|...
T Consensus        86 eDsAvYYC~~~   96 (112)
T d1ncwl1          86 EDLGVYYCWQG   96 (112)
T ss_dssp             GGCEEEEEEEC
T ss_pred             CcCEeEEEEcC
Confidence            99999999543

>d1nkra2 b.1.1.4 (A:102-200) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=98.18  E-value=5.4e-06  Score=48.95  Aligned_cols=66  Identities=11%  Similarity=0.070  Sum_probs=42.7

Q ss_pred             eecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcC
Q psy7036         123 QEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNE  194 (254)
Q Consensus       123 ~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~  194 (254)
                      .+..|.+|+|.|... .+...+.|+|+|........... . ...   .+.+.|..+...|+|.|+|.....
T Consensus        16 ~V~~G~~VTL~C~~~-~~~~~f~L~k~g~~~~~~~~~~~-~-~~~---~~~f~~~~~~~~~~G~Y~C~y~~~   81 (99)
T d1nkra2          16 TVLAGENVTLSCSSR-SSYDMYHLSREGEAHERRLPAGP-K-VNG---TFQADFPLGPATHGGTYRCFGSFH   81 (99)
T ss_dssp             EECTTCEEEEEEEES-SCCSEEEEEETTCSSCEEEECEE-E-ETT---EEEEEEEEEECCSCEEEEEEEEET
T ss_pred             cccCCCeEEEEECCC-CCccEEEEEECCCccccEEEccc-c-CCc---cEEEEEeccccccCEEEEEEeecC
Confidence            567899999999863 34568999998854321111001 1 111   125677778888999999987643

>d1sjva_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=98.17  E-value=4.4e-06  Score=49.24  Aligned_cols=70  Identities=17%  Similarity=0.274  Sum_probs=43.1

Q ss_pred             eecCCCeEEEEEEEeeC--CCCceEEEeC--CE---E---ee--------eCCcceEEEeecCCcceEEEEEEeccCCCC
Q psy7036          19 QEDEGNRLIFECQLLCN--PKPDIVWFRG--ET---Q---LS--------EDTRTVMKTTPIGTNKYLVALELDDVIETD   80 (254)
Q Consensus        19 ~v~~g~~v~l~C~~~~~--~~~~v~W~~~--~~---~---~~--------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d   80 (254)
                      .+++|++++|+|.+.|.  ....+.|+|.  |+   -   +.        ..-+.++....+.. .....|+|.+++.+|
T Consensus         4 lvkPG~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewi~~i~~~g~t~y~~~~kgR~tiSrd~s-~n~~~L~i~~l~~eD   82 (107)
T d1sjva_           4 LVQAGESLKLSCAASGNTFSGGFMGWYRQAPGKQRELVATINSRGITNYADFVKGRFTISRDNA-KKTVYLEMNSLEPED   82 (107)
T ss_dssp             CCCTTCCEEEEECCCC-----CCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTCEEEEECTT-TCCEEEEECSCCGGG
T ss_pred             EecCCCCcEEEEEECCCCccCCcEEEEEeCCccceeeeeeeeeccccccccccccceEEecCCc-eeEEEEeecCCCccc
Confidence            46799999999999874  3456789873  11   1   11        11112232222221 223469999999999


Q ss_pred             CeEEEEEEE
Q psy7036          81 AGLYKVKAK   89 (254)
Q Consensus        81 ~G~Y~C~~~   89 (254)
                      ++.|.|...
T Consensus        83 tAvYyCA~~   91 (107)
T d1sjva_          83 TAVYYCYTH   91 (107)
T ss_dssp             CSEEEEEEC
T ss_pred             ceeeeEecc
Confidence            999999654

>d1igtb4 b.1.1.2 (B:363-474) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus), gamma2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Mouse (Mus musculus), gamma2 [TaxId: 10090]

Probab=98.17  E-value=2e-06  Score=51.25  Aligned_cols=71  Identities=18%  Similarity=0.288  Sum_probs=46.7

Q ss_pred             CCCeEEEEEEEeeC-CC-CeEEEEECCEecccCCcceEEEcCCC-CceeeEEEEccCCCCCceeEEEEEEcCCC
Q psy7036         126 DGKRLLFECRIQAD-PA-PTVIWSHSGVQVKEDKRHKFSIDKDG-HSYFASLEIIDVTIEDAGKYKVTAKNELG  196 (254)
Q Consensus       126 ~g~~~~l~C~~~~~-~~-~~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~G~y~C~~~~~~~  196 (254)
                      .++.+.|.|.+.++ |. ..+.|.++|...............++ +...+.|.|..-.......|+|.+.+...
T Consensus        18 ~~~~~tl~C~v~gf~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~W~~~~~ytC~V~H~~l   91 (102)
T d1igtb4          18 TKKQVTLTCMVTDFMPEDIYVEWTNNGKTELNYKNTEPVLDSDGSYFMYSKLRVEKKNWVERNSYSCSVVHEGL   91 (102)
T ss_dssp             TSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEECTTSCEEEEEEEEEEHHHHHTCCCEEEEEECTTS
T ss_pred             cCCcEEEEEEEEEeECCCcEEEEEECCEEccCcEEccceeCCCCcEEEEEEEEECHHHcCCCCEEEEEEEeCCC
Confidence            46779999999885 43 46999999987543322222223333 34556777766554555689999998654

>d2aq2a1 b.1.1.1 (A:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.17  E-value=1.1e-05  Score=48.69  Aligned_cols=73  Identities=12%  Similarity=0.161  Sum_probs=45.4

Q ss_pred             CCCeeeecCCCeEEEEEEEeeCCCCeEEEEEC--CEe---c-c--cC--------CcceEEEcCCCCceeeEEEEccCCC
Q psy7036         118 KPSIRQEDDGKRLLFECRIQADPAPTVIWSHS--GVQ---V-K--ED--------KRHKFSIDKDGHSYFASLEIIDVTI  181 (254)
Q Consensus       118 ~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~--~~~---~-~--~~--------~~~~~~~~~~~~~~~~~l~i~~~~~  181 (254)
                      .+..+.+.+|++++|.|..... ...+.|||.  |+.   + .  ..        ...........  ....|.|.++..
T Consensus         7 ~P~~~~~~~G~~vtl~C~~s~~-~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~L~I~~~~~   83 (110)
T d2aq2a1           7 SPRNKVAVTGEKVTLSCQQTNN-HNNMYWYRQDTGHGLRLIHYSYGVGNTEKGDIPDGYEASRPSQ--EQFSLILESATP   83 (110)
T ss_dssp             ECSEEEECTTCCEEEEEEESSC-CSEEEEEEECTTSCEEEEEEESSTTCCEECSCCTTCEEEEEET--TEEEEEESSCCG
T ss_pred             eCCeEEEcCCCCEEEEEEECCC-cCcEEEEEEcccCCceEEEEEeecCCcccCCCCCCEEEEeccC--CEEEEEECCCCH
Confidence            3456678899999999986543 457999983  111   0 0  00        00011111111  124799999999


Q ss_pred             CCceeEEEEEEc
Q psy7036         182 EDAGKYKVTAKN  193 (254)
Q Consensus       182 ~d~G~y~C~~~~  193 (254)
                      +|+|.|.|.+..
T Consensus        84 ~Dsa~YyCa~~~   95 (110)
T d2aq2a1          84 SQTSVYFCASGG   95 (110)
T ss_dssp             GGCEEEEEEEEE
T ss_pred             hhCEEEEEeeCC
Confidence            999999998764

>d1hxmb2 b.1.1.2 (B:124-230) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=98.17  E-value=7.3e-06  Score=49.19  Aligned_cols=82  Identities=9%  Similarity=0.144  Sum_probs=49.8

Q ss_pred             eeeecCCCeEEEEEEEeeCCCC--eEEEEECCEecccCCcceEEEcCC-CCceeeEEEEccCCCCCceeEEEEEEcCCCc
Q psy7036         121 IRQEDDGKRLLFECRIQADPAP--TVIWSHSGVQVKEDKRHKFSIDKD-GHSYFASLEIIDVTIEDAGKYKVTAKNELGE  197 (254)
Q Consensus       121 ~~~~~~g~~~~l~C~~~~~~~~--~~~W~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~  197 (254)
                      ......+..+.|.|.+.++.+.  .+.|.++|..+............+ .+...+.|.+..-..  ...|+|.+.+....
T Consensus        18 ~~e~~~~~~~~l~Clv~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~gt~~~~S~L~v~~~~w--~~~ytC~V~H~s~~   95 (107)
T d1hxmb2          18 IAETKLQKAGTYLCLLEKFFPDVIKIHWEEKKSNTILGSQEGNTMKTNDTYMKFSWLTVPEKSL--DKEHRCIVRHENNK   95 (107)
T ss_dssp             GGGGGSSSCEEEEEEEEEESSCCEEEEEEESSSCCCCCCEECCCEECSSSEEEEEEEEECTGGG--GSCEEEEEEETTSG
T ss_pred             HHHHccCCcEEEEEEEeEEeCCceEEEEEECCeEccCCEEccceecCCCeEEEEEEEEEecccC--CCeEEEEEEECCCC
Confidence            3345567789999999986543  599999998765432221112222 334445666654333  23799999997665


Q ss_pred             ceEEEEE
Q psy7036         198 SNATISL  204 (254)
Q Consensus       198 ~~~~~~~  204 (254)
                      ......+
T Consensus        96 ~~i~~~i  102 (107)
T d1hxmb2          96 NGVDQEI  102 (107)
T ss_dssp             GGSCEEE
T ss_pred             CCCceEE
Confidence            5433333

>d1ct8b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]

Probab=98.17  E-value=2.4e-05  Score=46.91  Aligned_cols=74  Identities=9%  Similarity=0.152  Sum_probs=46.5

Q ss_pred             CCceeecCCCeEEEEEEEeeCC--CCceEEEeC--CEE------ee---------eCCcceEEEeecCCcceEEEEEEec
Q psy7036          15 PQLRQEDEGNRLIFECQLLCNP--KPDIVWFRG--ETQ------LS---------EDTRTVMKTTPIGTNKYLVALELDD   75 (254)
Q Consensus        15 ~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~--~~~------~~---------~~~~~~~~~~~~~~~~~~~~l~i~~   75 (254)
                      .....+.+|++++|+|.+.|..  ...+.|+|.  |+-      +.         ..-..++....+. ......|.|.+
T Consensus         7 sG~~~~kPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkgLEwlg~i~~~~~~~~y~~~~~gR~tis~D~-s~~t~yL~i~~   85 (118)
T d1ct8b1           7 SGAVLVKPGASVKLSCKTSGFTFSSSYINWLKQKPGQSLEWIAWIYAGSGGTVYNQHFTDKARLTVDT-SSSTAYMQFSS   85 (118)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCSTTCEEEEEEECTTSCEEEEEEEETTTCCEEECTTSTTTEEEEEEG-GGTEEEEEECS
T ss_pred             ECCceECCCCCEEEEEEEccccCCCCCCcccEECCCCceEeeeeccccccchhhhhheeeeEEEEecC-ccceEEecccc
Confidence            3446789999999999998743  446788862  211      11         1111122222221 12234789999


Q ss_pred             cCCCCCeEEEEEEE
Q psy7036          76 VIETDAGLYKVKAK   89 (254)
Q Consensus        76 ~~~~d~G~Y~C~~~   89 (254)
                      ++.+|.+.|.|...
T Consensus        86 L~~eDtAvYYCAr~   99 (118)
T d1ct8b1          86 LTTEDSAIYYCARY   99 (118)
T ss_dssp             CCGGGCEEEEEEEE
T ss_pred             cCCCcceEEEEeee
Confidence            99999999999764

>d1kgcd1 b.1.1.1 (D:2-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.17  E-value=6.8e-06  Score=49.84  Aligned_cols=73  Identities=14%  Similarity=0.255  Sum_probs=47.7

Q ss_pred             CCeeeecCCCeEEEEEEEeeCC-CCeEEEEEC--CEecc----------cCCcceEEEcCCCCceeeEEEEccCCCCCce
Q psy7036         119 PSIRQEDDGKRLLFECRIQADP-APTVIWSHS--GVQVK----------EDKRHKFSIDKDGHSYFASLEIIDVTIEDAG  185 (254)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~~-~~~~~W~~~--~~~~~----------~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G  185 (254)
                      +..+.+.+|+.++|.|...+.. ...+.|||.  ++.+.          .....++....+.  ....|.|.++..+|+|
T Consensus         5 P~~~~~~~G~svtl~C~~s~~~~~~~~~WYrQ~pg~~~~~i~~~~~~~~~~~~~~~~~~~~~--~~~~L~i~~~~~~Dsa   82 (112)
T d1kgcd1           5 PNSMESNEEEPVHLPCNHSTISGTDYIHWYRQLPSQGPEYVIHGLTSNVNNRMASLAIAEDR--KSSTLILHRATLRDAA   82 (112)
T ss_dssp             CSEEEEETTSCEEEEEEESCCCTTCCEEEEEECTTSCCEEEEEESSSSEECSSEEEEECTTS--SEEEEEESSCCGGGCE
T ss_pred             CCEEEECCCCCEEEEEEEeCCCccccEEEEEECCCCCcceeeeecceeccccccceeecccC--CeeEEEEeecccccce
Confidence            4556788999999999976543 345899983  21110          1111233333332  2347999999999999


Q ss_pred             eEEEEEEc
Q psy7036         186 KYKVTAKN  193 (254)
Q Consensus       186 ~y~C~~~~  193 (254)
                      .|.|.+..
T Consensus        83 ~YyCa~~~   90 (112)
T d1kgcd1          83 VYYCILPL   90 (112)
T ss_dssp             EEEEECCC
T ss_pred             eEeeeEec
Confidence            99998754

>d1rz7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=98.17  E-value=1.2e-05  Score=48.36  Aligned_cols=73  Identities=16%  Similarity=0.202  Sum_probs=46.3

Q ss_pred             CceeecCCCeEEEEEEEeeCC--CCceEEEeC--CE------Eeee---------CCcceEEEeecCCcceEEEEEEecc
Q psy7036          16 QLRQEDEGNRLIFECQLLCNP--KPDIVWFRG--ET------QLSE---------DTRTVMKTTPIGTNKYLVALELDDV   76 (254)
Q Consensus        16 ~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~--~~------~~~~---------~~~~~~~~~~~~~~~~~~~l~i~~~   76 (254)
                      ....+.+|++++|+|.+.|..  ...+.|+|.  |+      .+..         .-+.++....+.. .....|.|.++
T Consensus         8 g~~~~kpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewv~~i~~~~~~~~ya~s~kgRftiSrD~s-~nt~yLqm~sL   86 (119)
T d1rz7h1           8 GAEVKKPGATVKISCKASGYTFSDFYMYWVRQAPGKGLEWMGLIDPEDADTMYAEKFRGRVTITADTS-TDTGYLELSSL   86 (119)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECTTTTTTEEEEEETT-TTEEEEEECSC
T ss_pred             CCceECCCCCEEEEEEEcCCCCcCCceEccccCCccceeeeeecCCcccccccccceeeeEEEecccC-ceEEEeeeecc
Confidence            345689999999999998844  446889873  11      1111         1111222222222 22336999999


Q ss_pred             CCCCCeEEEEEEE
Q psy7036          77 IETDAGLYKVKAK   89 (254)
Q Consensus        77 ~~~d~G~Y~C~~~   89 (254)
                      +.+|.+.|.|...
T Consensus        87 ~~eDTAvYYCAr~   99 (119)
T d1rz7h1          87 RSEDTAVYYCAAD   99 (119)
T ss_dssp             CGGGCEEEEEEEC
T ss_pred             CcccceEEEEeec
Confidence            9999999999765

>d1rihh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.17  E-value=1.6e-05  Score=48.37  Aligned_cols=75  Identities=11%  Similarity=0.190  Sum_probs=47.1

Q ss_pred             CCCceeecCCCeEEEEEEEeeCC--CCceEEEeC--CEE------ee---------eCCcceEEEeecCCcceEEEEEEe
Q psy7036          14 KPQLRQEDEGNRLIFECQLLCNP--KPDIVWFRG--ETQ------LS---------EDTRTVMKTTPIGTNKYLVALELD   74 (254)
Q Consensus        14 ~~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~--~~~------~~---------~~~~~~~~~~~~~~~~~~~~l~i~   74 (254)
                      ++....+.+|++++|+|.+.|..  ...+.|+|.  |+-      +.         ..-..++....+.. .....|.|.
T Consensus         6 esg~~l~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~pGkglewlg~i~~~~~~~~ya~s~~~R~tis~D~s-~n~vyL~l~   84 (125)
T d1rihh1           6 QSGNELAKPGASMKMSCRASGYSFTSYWIHWLKQRPDQGLEWIGYIDPATAYTESNQKFKDKAILTADRS-SNTAFMYLN   84 (125)
T ss_dssp             ECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEEETT-TTEEEEEEC
T ss_pred             eECCceECCCCCEEEEEEEccCCCCCCCCccccCCCCccceeeeecCCccccccccccceeeeEEecccC-cceEeeeee
Confidence            34455789999999999998743  446888872  211      11         11111222222221 223469999


Q ss_pred             ccCCCCCeEEEEEEE
Q psy7036          75 DVIETDAGLYKVKAK   89 (254)
Q Consensus        75 ~~~~~d~G~Y~C~~~   89 (254)
                      +++.+|++.|.|...
T Consensus        85 sL~~eDtAvYYCAR~   99 (125)
T d1rihh1          85 SLTSEDSAVYYCARE   99 (125)
T ss_dssp             SCCGGGCEEEEEEEE
T ss_pred             ccCcccceEEEEeee
Confidence            999999999999754

>d1n0xh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=98.16  E-value=1.4e-05  Score=48.50  Aligned_cols=74  Identities=15%  Similarity=0.205  Sum_probs=46.5

Q ss_pred             CCCceeecCCCeEEEEEEEeeCC--CCceEEEeC--CEE------eee---------CCcceEEEeecCCcceEEEEEEe
Q psy7036          14 KPQLRQEDEGNRLIFECQLLCNP--KPDIVWFRG--ETQ------LSE---------DTRTVMKTTPIGTNKYLVALELD   74 (254)
Q Consensus        14 ~~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~--~~~------~~~---------~~~~~~~~~~~~~~~~~~~l~i~   74 (254)
                      ++....+++|++++|+|.+.|..  ...+.|+|.  |+.      +..         .-+.++....+.. .....|.+.
T Consensus         6 esg~~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglew~g~i~~~~~~~~ya~s~kgR~tiS~D~s-~nt~yL~~~   84 (127)
T d1n0xh1           6 QSGAEVKKPGASVKVSCQASGYRFSNFVIHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTS-ANTAYMELR   84 (127)
T ss_dssp             ECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECTTTCCEEECTTTTTTEEEEEEGG-GTEEEEEEC
T ss_pred             eECCceECCCCCEEEEEEEcCCCCCCCCEEEEEeCCCCcceeeeecCccccccccchhccccceEecccC-ceEEEEEEE
Confidence            44456789999999999998743  446788872  211      111         1112222222211 223368999


Q ss_pred             ccCCCCCeEEEEEE
Q psy7036          75 DVIETDAGLYKVKA   88 (254)
Q Consensus        75 ~~~~~d~G~Y~C~~   88 (254)
                      +++.+|++.|.|.-
T Consensus        85 ~L~~eDtAvYYCAR   98 (127)
T d1n0xh1          85 SLRSADTAVYYCAR   98 (127)
T ss_dssp             SCCGGGCEEEEEEE
T ss_pred             ccCCCCceEEEEEe
Confidence            99999999999964

>d1fnga1 b.1.1.2 (A:82-182) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-E group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-E group [TaxId: 10090]

Probab=98.16  E-value=9.5e-06  Score=47.96  Aligned_cols=75  Identities=19%  Similarity=0.185  Sum_probs=46.8

Q ss_pred             CCCeEEEEEEEeeCCC--CeEEEEECCEecccCCc-ceEEEcCCC-CceeeEEEEccCCCCCceeEEEEEEcCCCcceEE
Q psy7036         126 DGKRLLFECRIQADPA--PTVIWSHSGVQVKEDKR-HKFSIDKDG-HSYFASLEIIDVTIEDAGKYKVTAKNELGESNAT  201 (254)
Q Consensus       126 ~g~~~~l~C~~~~~~~--~~~~W~~~~~~~~~~~~-~~~~~~~~~-~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~  201 (254)
                      .|+..+|.|.+.++.+  ..+.|.+||..+..... .......++ +...+.|.+..   .+...|+|.+.+........
T Consensus        18 ~~~~~tL~C~v~gF~P~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~S~L~v~~---~~~~~ytC~V~H~sl~~pi~   94 (101)
T d1fnga1          18 LGEPNILICFIDKFSPPVVNVTWLRNGRPVTEGVSETVFLPRDDHLFRKFHYLTFLP---STDDFYDCEVDHWGLEEPLR   94 (101)
T ss_dssp             TTSCEEEEEEEEEEBSSCCEEEEEETTEEECSSEEECCCEECSSSCEEEEEEEEECC---CTTCCEEEEEECTTCSSCEE
T ss_pred             CCCCEEEEEEEEeEECCCCEEEEEECCeecCCCcEeCeEEECCCCcEEEEEEeEEcC---CCCCEEEEEEEECCCCCCce
Confidence            4677889999998643  47999999998764321 112223333 23445666654   33457999999876544444


Q ss_pred             EE
Q psy7036         202 IS  203 (254)
Q Consensus       202 ~~  203 (254)
                      ..
T Consensus        95 ~~   96 (101)
T d1fnga1          95 KH   96 (101)
T ss_dssp             EE
T ss_pred             EE
Confidence            33

>d1ncwh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]

Probab=98.16  E-value=1.2e-05  Score=48.30  Aligned_cols=70  Identities=17%  Similarity=0.229  Sum_probs=45.0

Q ss_pred             ceeecCCCeEEEEEEEeeCCC---CceEEEeC--CEEe------ee----------CCcceEEEeecCCcceEEEEEEec
Q psy7036          17 LRQEDEGNRLIFECQLLCNPK---PDIVWFRG--ETQL------SE----------DTRTVMKTTPIGTNKYLVALELDD   75 (254)
Q Consensus        17 ~~~v~~g~~v~l~C~~~~~~~---~~v~W~~~--~~~~------~~----------~~~~~~~~~~~~~~~~~~~l~i~~   75 (254)
                      ...+++|++++|+|.+.|..-   ..+.|+|.  |+-+      ..          ..++.+...  . ..-...|.+.+
T Consensus         9 ~~~vkPg~sl~LsC~~SG~s~~s~y~~~WvRQ~PGkglEwig~i~~~~~t~y~~s~kgR~TiS~D--~-s~nt~~L~~~s   85 (119)
T d1ncwh1           9 PGLVKPSQSLSLTCTVTGYSITSDFAWNWIRQFPGNKLEWMGYINYSGFTSHNPSLKSRISITRD--T-SKNQFFLQLNS   85 (119)
T ss_dssp             CSEECTTSCEEEEEEEESSCTTSSEEEEEEEEETTTEEEEEEEEETTSCEEECGGGTTTEEEEEE--T-TTTEEEEEECS
T ss_pred             CcEECCCCCEEEEEEEccccccCCCccccceECCCcceeeeeeccccccchhchhccccceEecc--c-ccceeeccccc
Confidence            447889999999999998543   34789862  2211      11          112222221  1 12233699999


Q ss_pred             cCCCCCeEEEEEEE
Q psy7036          76 VIETDAGLYKVKAK   89 (254)
Q Consensus        76 ~~~~d~G~Y~C~~~   89 (254)
                      ++.+|.+.|.|...
T Consensus        86 L~~eDTAvYYCAr~   99 (119)
T d1ncwh1          86 VTTEDTATYYCAGL   99 (119)
T ss_dssp             CCGGGCEEEEEEEE
T ss_pred             cccCCceEEEEeEe
Confidence            99999999999754

>d1iqdb1 b.1.1.1 (B:1-114) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=98.15  E-value=5.2e-06  Score=49.72  Aligned_cols=73  Identities=14%  Similarity=0.322  Sum_probs=46.6

Q ss_pred             eeeecCCCeEEEEEEEeeCCCC--eEEEEEC--CEe------cc---------cCCcceEEEcCCCCceeeEEEEccCCC
Q psy7036         121 IRQEDDGKRLLFECRIQADPAP--TVIWSHS--GVQ------VK---------EDKRHKFSIDKDGHSYFASLEIIDVTI  181 (254)
Q Consensus       121 ~~~~~~g~~~~l~C~~~~~~~~--~~~W~~~--~~~------~~---------~~~~~~~~~~~~~~~~~~~l~i~~~~~  181 (254)
                      ...+.+|+++.|.|.+.|+...  .+.|+|.  |+.      +.         .....++....+.......|.|.+++.
T Consensus         9 ~~~~kPg~sv~LsC~~SG~s~~~y~~~W~RQ~PGkglEwlg~i~~~~~~~~y~~~~~gR~tiS~D~s~~t~~L~i~~L~~   88 (117)
T d1iqdb1           9 AEVKKPGASVKVSCKVSGYTLTELPVHWVRQAPGKGLEWVGSFDPESGESIYAREFQGSVTMTADTSTNIAYMELSSLRS   88 (117)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CceECCCCCEEEEEEEcCCCCCCCCEEEEEECCCCceeeeeecCCccccceecceeeeeeeeecccccceEEEeecccCc
Confidence            3457789999999999886432  4778873  111      11         111123333333332334699999999


Q ss_pred             CCceeEEEEEEc
Q psy7036         182 EDAGKYKVTAKN  193 (254)
Q Consensus       182 ~d~G~y~C~~~~  193 (254)
                      +|++.|.|....
T Consensus        89 eDtAvYYCA~~~  100 (117)
T d1iqdb1          89 DDTAVYYCAVPD  100 (117)
T ss_dssp             GGCEEEEEEECS
T ss_pred             CcceEEEEeEcC
Confidence            999999998654

>d1eapb1 b.1.1.1 (B:1-124) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.15  E-value=1.4e-05  Score=47.99  Aligned_cols=72  Identities=14%  Similarity=0.281  Sum_probs=46.1

Q ss_pred             CCceeecCCCeEEEEEEEeeCC--CCceEEEeC--CEE------eee-----------CCcceEEEeecCCcceEEEEEE
Q psy7036          15 PQLRQEDEGNRLIFECQLLCNP--KPDIVWFRG--ETQ------LSE-----------DTRTVMKTTPIGTNKYLVALEL   73 (254)
Q Consensus        15 ~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~--~~~------~~~-----------~~~~~~~~~~~~~~~~~~~l~i   73 (254)
                      .-...+.+|++++|+|.+.|..  ...+.|+|.  |+-      +..           ..++.+...  .. .....|.|
T Consensus         7 sG~~~~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgRftiSrD--~s-~nt~~L~~   83 (119)
T d1eapb1           7 SGTELVKPGASVKISCKASGYISTDHAIHWVKQRPEQGLEWIGYISPGNGDIKYNEKFKVKATLTAD--QS-SSTAYMQL   83 (119)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECSSSCEEEEEEECTTTCCEEECGGGTTTEEEEEE--GG-GTEEEEEE
T ss_pred             ECCceECCCCCEEEEEEEccCcccCCCCccceeCCcccceeeeecCCcccchhhhhhhhcceEEEcc--cC-cceEEeee
Confidence            3345688999999999998753  446889873  211      111           112222221  11 12337999


Q ss_pred             eccCCCCCeEEEEEEE
Q psy7036          74 DDVIETDAGLYKVKAK   89 (254)
Q Consensus        74 ~~~~~~d~G~Y~C~~~   89 (254)
                      .+++.+|.+.|.|...
T Consensus        84 ~sL~~eDTAvYYCAr~   99 (119)
T d1eapb1          84 NSLTSEDSAVYFCKRS   99 (119)
T ss_dssp             CSCCGGGCEEEEEEEC
T ss_pred             ecccCCcceEEEEEEe
Confidence            9999999999999653

>d1dn0b2 b.1.1.2 (B:121-225) Immunoglobulin heavy chain mu constant domain 1, CH1-mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain mu constant domain 1, CH1-mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.14  E-value=4.6e-06  Score=49.89  Aligned_cols=77  Identities=9%  Similarity=0.053  Sum_probs=47.7

Q ss_pred             CCCeEEEEEEEeeCCC--CeEEEEECCEecccCCcce-EEEcCCCCceeeEEEEccCCCC--CceeEEEEEEcCCCcceE
Q psy7036         126 DGKRLLFECRIQADPA--PTVIWSHSGVQVKEDKRHK-FSIDKDGHSYFASLEIIDVTIE--DAGKYKVTAKNELGESNA  200 (254)
Q Consensus       126 ~g~~~~l~C~~~~~~~--~~~~W~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~--d~G~y~C~~~~~~~~~~~  200 (254)
                      ....+.|.|.+.++.+  ..+.|.+++..+....... ....++.+...+.|.|..-...  ....|+|.+.+..+....
T Consensus        20 ~~~~~~l~Cl~~gF~P~~i~v~W~~~~~~~~~~~~~~~~~~~~gtys~~S~L~v~~~eW~~~~~~~ytC~V~H~~~~~~~   99 (105)
T d1dn0b2          20 DTSSVAVGCLAQDFLPDSITFSWKYKNNSDISSTRGFPSVLRGGKYAATSQVLLPSKDVMAGTDEHVVCKVQHPNGNKEK   99 (105)
T ss_dssp             -CCSEEEEEEEEEEBSSCCEEEEEETTSCEECCEEECCCEEETTEEEEEEEEEECTTCC---CCCEEEEEEECTTCCEEE
T ss_pred             CCCceEEEEEEecccCCcEEEEEEECCccccCCEEcceEEccCCCEEEEEEEEEcHHHhccCCCCEEEEEEEECCCCEEe
Confidence            4567899999998643  4699999887654322111 1122233345567887766543  234799999987665544


Q ss_pred             EE
Q psy7036         201 TI  202 (254)
Q Consensus       201 ~~  202 (254)
                      .+
T Consensus       100 ~v  101 (105)
T d1dn0b2         100 NV  101 (105)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

>d1k5na1 b.1.1.2 (A:182-276) Class I MHC, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.14  E-value=5.8e-06  Score=48.43  Aligned_cols=68  Identities=13%  Similarity=0.187  Sum_probs=41.8

Q ss_pred             CCeEEEEEEEeeCCCC--eEEEEECCEecccCCcce-EEEcCCCC-ceeeEEEEccCCCCCceeEEEEEEcCCCc
Q psy7036         127 GKRLLFECRIQADPAP--TVIWSHSGVQVKEDKRHK-FSIDKDGH-SYFASLEIIDVTIEDAGKYKVTAKNELGE  197 (254)
Q Consensus       127 g~~~~l~C~~~~~~~~--~~~W~~~~~~~~~~~~~~-~~~~~~~~-~~~~~l~i~~~~~~d~G~y~C~~~~~~~~  197 (254)
                      +..++|.|.+.++.+.  .++|.++|..+....... .....++. ...+.|.+.   ..+...|+|.+.+....
T Consensus        15 ~~~~~L~C~~~gFyP~~i~vtW~~~g~~~~~~~~~~~~~~~~~~~~~~~s~l~v~---~~~~~~ytC~V~H~~L~   86 (95)
T d1k5na1          15 DHEATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDRTFQKWAAVVVP---SGEEQRYTCHVQHEGLP   86 (95)
T ss_dssp             TTEEEEEEEEEEEBSSCCEEEEEETTEECGGGCEECCCEECSSSCEEEEEEEEEE---TTCGGGEEEEEECTTCS
T ss_pred             CCCEEEEEEEEeEeCCCCEEEEEECCEEcCCCceeccEEcCCCCeEEEEEEEEEE---cCCCCEEEEEEEECcCC
Confidence            4578999999997543  589999999876543221 12222222 223344443   33445799999986443

>d3b5ha2 b.1.1.4 (A:23-102) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.14  E-value=2.9e-05  Score=42.19  Aligned_cols=56  Identities=20%  Similarity=0.379  Sum_probs=39.6

Q ss_pred             CCCeEEEEEEEeeCCC--CeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEE
Q psy7036         126 DGKRLLFECRIQADPA--PTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAK  192 (254)
Q Consensus       126 ~g~~~~l~C~~~~~~~--~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~  192 (254)
                      .|..+.|+|.......  .--.|.|+|+.+.........         ..+.|..  .+++|.|.|.+.
T Consensus        11 ~~sk~~LtCnLt~s~~~i~ghrW~K~gkvl~ed~~~~~~---------tey~V~~--~D~SGeY~CVFl   68 (80)
T d3b5ha2          11 LGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALPGQK---------TEFKVDS--DDQWGEYSCVFL   68 (80)
T ss_dssp             ETTEEEEEEEEESCSSCCCEEEEESSSEEEECTTCCCSE---------EEEEECG--GGCCEEEEEEEE
T ss_pred             CCCCEEEEEECCCCCCceeeeEEeeCCEEccccCCCCCc---------eEEEEec--CCCCceEEEEEc
Confidence            4778899999866543  247899999998765332111         2566664  788999999965

>d1ogae1 b.1.1.1 (E:5-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.14  E-value=1.4e-05  Score=48.56  Aligned_cols=73  Identities=8%  Similarity=0.157  Sum_probs=45.8

Q ss_pred             CCeeeecCCCeEEEEEEEeeCCCCeEEEEECCE--e--c----c--------cCCcceEEEcCCCCceeeEEEEccCCCC
Q psy7036         119 PSIRQEDDGKRLLFECRIQADPAPTVIWSHSGV--Q--V----K--------EDKRHKFSIDKDGHSYFASLEIIDVTIE  182 (254)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~--~--~----~--------~~~~~~~~~~~~~~~~~~~l~i~~~~~~  182 (254)
                      +..+.+.+|+.++|.|... .....+.||+...  .  +    .        ..............  ...|.|.++..+
T Consensus         6 P~~~~~~~G~svtl~C~~s-~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~L~I~~~~~~   82 (114)
T d1ogae1           6 PKYLFRKEGQNVTLSCEQN-LNHDAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVSREKKE--SFPLTVTSAQKN   82 (114)
T ss_dssp             CSEEEEETTCCEEECCEEC-SCCSEEEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEECCSSTT--BCCEEECSCCSC
T ss_pred             CCeEEEcCCCCEEEEEEEe-cCCCcEEEEeeccccCCcceeeeeeeeccccccCCCceEEEcccCC--eEEEEECcCCcC
Confidence            4556788999999999975 3345799997321  1  0    0        00111111111111  237999999999


Q ss_pred             CceeEEEEEEcC
Q psy7036         183 DAGKYKVTAKNE  194 (254)
Q Consensus       183 d~G~y~C~~~~~  194 (254)
                      |+|.|.|.+...
T Consensus        83 DSa~YyCa~~~~   94 (114)
T d1ogae1          83 PTAFYLCASSSR   94 (114)
T ss_dssp             CCEEEEEEEESS
T ss_pred             CceeEEEeeccC
Confidence            999999987644

>d2fx7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=98.14  E-value=2e-05  Score=47.82  Aligned_cols=74  Identities=14%  Similarity=0.216  Sum_probs=46.5

Q ss_pred             CceeecCCCeEEEEEEEeeCC--CCceEEEeC--CEE------eee---------CCcceEEEeecCCcceEEEEEEecc
Q psy7036          16 QLRQEDEGNRLIFECQLLCNP--KPDIVWFRG--ETQ------LSE---------DTRTVMKTTPIGTNKYLVALELDDV   76 (254)
Q Consensus        16 ~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~--~~~------~~~---------~~~~~~~~~~~~~~~~~~~l~i~~~   76 (254)
                      ....+++|+++.|+|.+.|..  ...+.|+|.  |+-      +..         .-+.++....+.. .....|.+.++
T Consensus         8 g~~~~kPg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglew~g~i~~~~~~~~y~~s~kgR~tiSrD~s-~~t~yL~~~sL   86 (127)
T d2fx7h1           8 GAEVKRPGSSVTVSCKASGGSFSTYALSWVRQAPGRGLEWMGGVIPLLTITNYAPRFQGRITITADRS-TSTAYLELNSL   86 (127)
T ss_dssp             CCEEECTTCCEEEEEEEESSCSTTSCEEEEEECTTCCEEEEEEEEGGGTEEEECGGGTTTEEEEEETT-TTEEEEEECSC
T ss_pred             CCceECCCCCEEEEEEEcCCCCCCCCeEEEEeCCCCcceeeeccCcccccccccceeeeeEEEeccCc-cceEeeeeccc
Confidence            345688999999999998743  456889862  211      111         0112222222221 22336999999


Q ss_pred             CCCCCeEEEEEEEc
Q psy7036          77 IETDAGLYKVKAKN   90 (254)
Q Consensus        77 ~~~d~G~Y~C~~~~   90 (254)
                      +.+|++.|.|.-..
T Consensus        87 ~~eDTavYYCAR~~  100 (127)
T d2fx7h1          87 RPEDTAVYYCAREG  100 (127)
T ss_dssp             CGGGCEEEEEEEEE
T ss_pred             CcccceEEEEeecc
Confidence            99999999997653

>d1i1ca2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.14  E-value=3.8e-06  Score=50.02  Aligned_cols=71  Identities=15%  Similarity=0.253  Sum_probs=47.4

Q ss_pred             CCeEEEEEEEeeCCC--CeEEEEECCEecccCCcceEEEcCCCC-ceeeEEEEccCCCCCceeEEEEEEcCCCc
Q psy7036         127 GKRLLFECRIQADPA--PTVIWSHSGVQVKEDKRHKFSIDKDGH-SYFASLEIIDVTIEDAGKYKVTAKNELGE  197 (254)
Q Consensus       127 g~~~~l~C~~~~~~~--~~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~G~y~C~~~~~~~~  197 (254)
                      ...+.|.|.+.++.+  ..+.|.++|...............++. ...+.|.|..-.......|+|.|.+....
T Consensus        19 ~~~~~L~C~v~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgt~s~~S~L~v~~~~w~~~~~ytC~V~H~~~~   92 (102)
T d1i1ca2          19 QSQVSITCMVKGFYPPDIYTEWKMNGQPQENYKNTPPTMDTDGSYFLYSKLNVKKETWQQGNTFTCSVLHEGLE   92 (102)
T ss_dssp             SSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTTSG
T ss_pred             CCeEEEEEEEEEEECCCCEEEEEECCeeccCcEEcccEeCCCCCEEEEEEEEECHHHhCCCCEEEEEEEeCCCC
Confidence            457899999988643  469999999876533222223333443 44567777765555556899999986544

>d1tjgh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=98.14  E-value=1.7e-05  Score=48.84  Aligned_cols=73  Identities=18%  Similarity=0.188  Sum_probs=45.3

Q ss_pred             ceeecCCCeEEEEEEEeeCC----CCceEEEeC--CE---Ee---ee--------CCcceEEEeecCCcceEEEEEEecc
Q psy7036          17 LRQEDEGNRLIFECQLLCNP----KPDIVWFRG--ET---QL---SE--------DTRTVMKTTPIGTNKYLVALELDDV   76 (254)
Q Consensus        17 ~~~v~~g~~v~l~C~~~~~~----~~~v~W~~~--~~---~~---~~--------~~~~~~~~~~~~~~~~~~~l~i~~~   76 (254)
                      ...+.+|++++|+|.+.|..    ..-+.|+|.  |+   -+   ..        .-+.++....+.. .....|.|.++
T Consensus         9 ~~~vkpg~Sl~LsC~~SG~~~s~~~~~~~WyRQ~pG~~le~l~~i~~~~~~~y~~~~k~Rftis~d~s-~~~~~L~i~~l   87 (132)
T d1tjgh1           9 PPLVKPTQTLTLTCSFSGFSLSDFGVGVGWIRQPPGKALEWLAIIYSDDDKRYSPSLNTRLTITKDTS-KNQVVLVMTRV   87 (132)
T ss_dssp             CSEECTTCCEEEEEEEESSCTTSTTCEEEEEEECTTSCCEEEEEEETTSCEEECGGGTTTEEEEEETT-TTEEEEEECSC
T ss_pred             CeeECCCCCeEEEEEEeCCCcCCCCCceEEEEECCCcccEEEEEecCCCccEeeeeeeecceeccccc-ccEEEcccccC
Confidence            34688999999999998743    235789973  11   11   10        0011222222211 12347999999


Q ss_pred             CCCCCeEEEEEEEc
Q psy7036          77 IETDAGLYKVKAKN   90 (254)
Q Consensus        77 ~~~d~G~Y~C~~~~   90 (254)
                      +.+|++.|.|....
T Consensus        88 ~~eDtAvYYCAr~~  101 (132)
T d1tjgh1          88 SPVDTATYFCAHRR  101 (132)
T ss_dssp             CGGGCEEEEEEEEC
T ss_pred             CcccceEEEEEEec
Confidence            99999999997653

>d1ogae2 b.1.1.2 (E:119-245) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.14  E-value=1e-06  Score=54.94  Aligned_cols=86  Identities=10%  Similarity=0.210  Sum_probs=53.8

Q ss_pred             CCCeeEe-CCCceeecCCCeEEEEEEEee-CC-CCceEEEeCCEEeeeCCcce---EEE---eecCCcceEEEEEEeccC
Q psy7036           7 FAPSFTQ-KPQLRQEDEGNRLIFECQLLC-NP-KPDIVWFRGETQLSEDTRTV---MKT---TPIGTNKYLVALELDDVI   77 (254)
Q Consensus         7 ~~p~~~~-~~~~~~v~~g~~v~l~C~~~~-~~-~~~v~W~~~~~~~~~~~~~~---~~~---~~~~~~~~~~~l~i~~~~   77 (254)
                      .+|.+.. .|....+..+..++|.|.+.+ .| ...|+|++||+.+.......   ...   ..++.....+.|.|....
T Consensus         3 ~PP~V~l~~Ps~~e~~~~~~~tL~C~v~gf~P~~i~v~W~~~g~~~~~~~~t~~~~~~~~~~~~d~tys~sS~L~v~~~~   82 (127)
T d1ogae2           3 FPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVSTDPQPLKEQPALNDSRYSLSSRLRVSATF   82 (127)
T ss_dssp             BCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECSSEEECSSCEESCTTSTTCCEEEEEEEEEEHHH
T ss_pred             cCCEEEEECCCHHHhccCCcEEEEEEEEeccCCCeEEEEEECCEEccCcEEecceeeeecccCCCCeEEEEEEEEECHHH
Confidence            4677654 343334556788999999988 34 45799999999875431110   000   112223344577887666


Q ss_pred             CCCCe-EEEEEEEcCC
Q psy7036          78 ETDAG-LYKVKAKNKM   92 (254)
Q Consensus        78 ~~d~G-~Y~C~~~~~~   92 (254)
                      ..+.| .|+|.|.+..
T Consensus        83 W~~~g~~ytC~V~H~~   98 (127)
T d1ogae2          83 WQNPRNHFRCQVQFYG   98 (127)
T ss_dssp             HTCTTCEEEEEEEECC
T ss_pred             hCCCCCEEEEEEEECC
Confidence            56655 7999998754

>d1f3dh1 b.1.1.1 (H:1-121) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.13  E-value=5.9e-06  Score=49.52  Aligned_cols=71  Identities=17%  Similarity=0.245  Sum_probs=44.2

Q ss_pred             eeeecCCCeEEEEEEEeeCCC--CeEEEEEC--CEe------cc-c--------CCcceEEEcCCCCceeeEEEEccCCC
Q psy7036         121 IRQEDDGKRLLFECRIQADPA--PTVIWSHS--GVQ------VK-E--------DKRHKFSIDKDGHSYFASLEIIDVTI  181 (254)
Q Consensus       121 ~~~~~~g~~~~l~C~~~~~~~--~~~~W~~~--~~~------~~-~--------~~~~~~~~~~~~~~~~~~l~i~~~~~  181 (254)
                      ...+.+|++++|.|.+.|+..  -.+.|++.  |+.      +. .        ....++....+.......|.|.+++.
T Consensus         9 ~~~~kPG~sl~LsC~~SG~s~~~y~~~W~RQ~PGkglewl~~i~~~~~~~~y~~~~~gRftis~D~s~~t~~L~i~~l~~   88 (115)
T d1f3dh1           9 PELVKPGASVKVSCKASGYSFIDYNIHWVKQSHGKSLEWIGYIVPYSGGTTFNQKFKGKATLTVDKSSSTAFMHLNSLTF   88 (115)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGBTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CcEECCCCCEEEEEEEccccCCCCCcceeEEcCCCccEEeeccCCCCCcccccceeeEEEEEeeccCceeeEeeeeecCc
Confidence            345778999999999987642  34788873  111      11 0        11112333322222234699999999


Q ss_pred             CCceeEEEEE
Q psy7036         182 EDAGKYKVTA  191 (254)
Q Consensus       182 ~d~G~y~C~~  191 (254)
                      +|++.|.|..
T Consensus        89 eDtAvYYCAr   98 (115)
T d1f3dh1          89 EDSAVYYCAN   98 (115)
T ss_dssp             GGCEEEEEEE
T ss_pred             CCcEEEEEec
Confidence            9999999964

>d1dn0b1 b.1.1.1 (B:1-120) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=98.13  E-value=1e-05  Score=48.71  Aligned_cols=69  Identities=16%  Similarity=0.227  Sum_probs=44.6

Q ss_pred             eeecCCCeEEEEEEEeeCCCC--eEEEEECC--Ee------cc--------cCCcceEEEcCCCCceeeEEEEccCCCCC
Q psy7036         122 RQEDDGKRLLFECRIQADPAP--TVIWSHSG--VQ------VK--------EDKRHKFSIDKDGHSYFASLEIIDVTIED  183 (254)
Q Consensus       122 ~~~~~g~~~~l~C~~~~~~~~--~~~W~~~~--~~------~~--------~~~~~~~~~~~~~~~~~~~l~i~~~~~~d  183 (254)
                      ..+.+|+.++|.|.+.|+...  .+.|++..  +.      +.        ..-..++....+.......|.|.+++.+|
T Consensus        10 ~~vkPG~sl~LsC~~SG~~~~~y~~~W~RQ~PGkglewv~~i~~~~~~~y~~~~kgRftiS~D~s~nt~~L~i~~l~~eD   89 (120)
T d1dn0b1          10 GLLKPSETLSLTCAVYGGSFSDYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDTSKNQFSLKLSSVTAAD   89 (120)
T ss_dssp             CEECTTSCEEEEEEEESSCCSSCCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             cEECCCCCEEEEEEEccccCccCcceeeeECCCccceeeeeccccccchhccceeeeeEEeccCchheeccccccccccc
Confidence            457789999999999986543  47888741  11      11        11112333333322223469999999999


Q ss_pred             ceeEEEE
Q psy7036         184 AGKYKVT  190 (254)
Q Consensus       184 ~G~y~C~  190 (254)
                      ++.|.|.
T Consensus        90 tA~YYCA   96 (120)
T d1dn0b1          90 TAVYYCA   96 (120)
T ss_dssp             CEEEEEE
T ss_pred             ccEEEEE
Confidence            9999994

>d1fp5a1 b.1.1.2 (A:336-438) Immunoglobulin heavy chain epsilon constant domain 3, CH3-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 3, CH3-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.13  E-value=3.4e-06  Score=50.34  Aligned_cols=76  Identities=11%  Similarity=0.096  Sum_probs=47.3

Q ss_pred             ecCCCeEEEEEEEeeCCC----CeEEEEECCEecccCCcceEEEcCCCC-ceeeEEEEccCCCCCceeEEEEEEcCCCcc
Q psy7036         124 EDDGKRLLFECRIQADPA----PTVIWSHSGVQVKEDKRHKFSIDKDGH-SYFASLEIIDVTIEDAGKYKVTAKNELGES  198 (254)
Q Consensus       124 ~~~g~~~~l~C~~~~~~~----~~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~  198 (254)
                      +..+..++|.|.+.++.+    ..+.|++++...............++. ...+.|.|..-.......|+|.+.+.....
T Consensus        13 l~~~~~~tL~C~v~gf~P~~~~v~~~W~~~~~~~~~~~~~~~~~~~~gt~s~~S~L~v~~~~w~~g~~~tC~V~H~~l~~   92 (103)
T d1fp5a1          13 LFIRKSPTITCLVVDLAPSKGTVNLTWSRASGKPVNHSTRKEEKQRNGTLTVTSTLPVGTRDWIEGETYQCRVTHPHLPR   92 (103)
T ss_dssp             HHTTCCCEEEEEEEESSCCSSCCEEEEEETTCCCCCCCEEEEEEETTTEEEEEEEEECCHHHHHTTCCEEEEEECSSCSS
T ss_pred             HhhCCCeEEEEEEEeeECCCceEEEEEcCCCceecccEEcccEECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEECCCCC
Confidence            445677899999998643    257788888766544333333333332 344566665444444568999999876544


Q ss_pred             e
Q psy7036         199 N  199 (254)
Q Consensus       199 ~  199 (254)
                      .
T Consensus        93 p   93 (103)
T d1fp5a1          93 A   93 (103)
T ss_dssp             C
T ss_pred             C
Confidence            3

>d1oaql_ b.1.1.1 (L:) Immunoglobulin light chain lambda variable domain, VL-lambda {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.13  E-value=5.6e-06  Score=49.87  Aligned_cols=72  Identities=19%  Similarity=0.241  Sum_probs=45.3

Q ss_pred             CeeeecCCCeEEEEEEEeeCCC---CeEEEEEC---CEe--c-------ccCCcceEEEcCCCCceeeEEEEccCCCCCc
Q psy7036         120 SIRQEDDGKRLLFECRIQADPA---PTVIWSHS---GVQ--V-------KEDKRHKFSIDKDGHSYFASLEIIDVTIEDA  184 (254)
Q Consensus       120 ~~~~~~~g~~~~l~C~~~~~~~---~~~~W~~~---~~~--~-------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~  184 (254)
                      ..+.+.+|+.++|.|...+...   .-+.||+.   ..+  +       ......++.....+.  .+.|.|.+++.+|+
T Consensus         8 ~slsvs~G~tvtl~C~~s~~~~~~~~~v~WyrQ~pg~~p~~l~y~~~~~~~~~~~rf~~s~~~~--~~~L~I~~~~~~Ds   85 (110)
T d1oaql_           8 SALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGN--KAALTITGAQTEDE   85 (110)
T ss_dssp             SEEEECTTCEEEEEEEETTBCCCGGGCCEEEEEETTTEEEEEEETTTEECTTSCTTEEEEEETT--EEEEEEESCCGGGC
T ss_pred             CCEEeCCCCCEEEEEEEcCCCCcceeeeEEEEeecccceeeeeeeeceeccccceeeeeccccc--ceeeecCCCCcccc
Confidence            3567889999999999864322   23889972   111  1       011111222222222  24799999999999


Q ss_pred             eeEEEEEEc
Q psy7036         185 GKYKVTAKN  193 (254)
Q Consensus       185 G~y~C~~~~  193 (254)
                      |.|.|.+..
T Consensus        86 a~YyCa~~~   94 (110)
T d1oaql_          86 AIYFCALWY   94 (110)
T ss_dssp             EEEEEEEEE
T ss_pred             EeEEEEccc
Confidence            999998764

>d1bz7b1 b.1.1.1 (B:1-122) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=98.13  E-value=1.9e-05  Score=47.78  Aligned_cols=73  Identities=14%  Similarity=0.202  Sum_probs=45.8

Q ss_pred             ceeecCCCeEEEEEEEeeCC--CCceEEEeC--CEE------ee---------eCCcceEEEeecCCcceEEEEEEeccC
Q psy7036          17 LRQEDEGNRLIFECQLLCNP--KPDIVWFRG--ETQ------LS---------EDTRTVMKTTPIGTNKYLVALELDDVI   77 (254)
Q Consensus        17 ~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~--~~~------~~---------~~~~~~~~~~~~~~~~~~~~l~i~~~~   77 (254)
                      ...+.+|++++|+|.+.|..  ...+.|+|.  |+-      +.         ..-+.++....+. ......|.+.+++
T Consensus         9 ~~lvkPg~sl~LsC~~SG~s~s~y~~~WvRQ~PGkglewl~~i~~~~~~~~Y~~s~kgRftiSrD~-s~~t~yL~m~sL~   87 (122)
T d1bz7b1           9 GGLVQPGGSRKLSCAASGFTFSNFGMHWVRQAPEKGLEWVAYISSGGSSINYADTVKGRFTISRDN-PKNTLFLQMTSLR   87 (122)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECSSSCEEEEEEECSSSSCEEECGGGTTTEEEEEEG-GGTEEEEEECSCC
T ss_pred             CceECCCCCeEEEEEEcCCCCcCCceEccccCCCcceeeeeecCcccccccccceeeeeEEEeccC-CccEeEeeeeeec
Confidence            34678999999999998754  446789872  111      11         1111122222221 1223469999999


Q ss_pred             CCCCeEEEEEEEc
Q psy7036          78 ETDAGLYKVKAKN   90 (254)
Q Consensus        78 ~~d~G~Y~C~~~~   90 (254)
                      .+|.+.|.|....
T Consensus        88 ~eDTAvYYCAr~~  100 (122)
T d1bz7b1          88 SEDTAIYYCTRGG  100 (122)
T ss_dssp             GGGCEEEEEEEEC
T ss_pred             ccCceEEEeecCC
Confidence            9999999997653

>d1c5db1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.13  E-value=9.3e-06  Score=48.51  Aligned_cols=71  Identities=20%  Similarity=0.340  Sum_probs=46.0

Q ss_pred             eeecCCCeEEEEEEEeeCCC--CeEEEEEC--CEec--------------ccCCcceEEEcCCCCceeeEEEEccCCCCC
Q psy7036         122 RQEDDGKRLLFECRIQADPA--PTVIWSHS--GVQV--------------KEDKRHKFSIDKDGHSYFASLEIIDVTIED  183 (254)
Q Consensus       122 ~~~~~g~~~~l~C~~~~~~~--~~~~W~~~--~~~~--------------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d  183 (254)
                      ..+.+|+.++|.|.+.|+..  -.+.|+|.  |+.+              ...-..++....+.......|.|.+++.+|
T Consensus        10 ~lvkPg~sl~LsC~~SG~~~~~~~~~W~RQ~PGkglewi~~i~~~~~~~y~~s~kgRftiS~D~s~n~~~L~~~sL~~eD   89 (117)
T d1c5db1          10 GLVQPSQTLSLTCTVSGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTSKSQVFLKMNSLQTED   89 (117)
T ss_dssp             SEECTTSCEEEEEEECSSCTTTCCEEEEEECTTSCCEEEEEECTTCCEEECTTTSSSEEEEEETTTTEEEEEECSCCGGG
T ss_pred             ceECCCCCeEEEEEEcCCCccCCceEcccCCCCcceeeeeccccccccccccccccceEEecccccceeeccccccccCc
Confidence            45778999999999988643  34788873  1111              111122333333333333479999999999


Q ss_pred             ceeEEEEEE
Q psy7036         184 AGKYKVTAK  192 (254)
Q Consensus       184 ~G~y~C~~~  192 (254)
                      .+.|.|...
T Consensus        90 tAvYYCAr~   98 (117)
T d1c5db1          90 TAIYFCTRE   98 (117)
T ss_dssp             CEEEEEEEC
T ss_pred             ceEEEEecc
Confidence            999999643

>d1mjuh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.12  E-value=6.9e-06  Score=48.94  Aligned_cols=74  Identities=18%  Similarity=0.319  Sum_probs=47.3

Q ss_pred             CCCeeeecCCCeEEEEEEEeeCCCC--eEEEEEC--CEe------cc---------cCCcceEEEcCCCCceeeEEEEcc
Q psy7036         118 KPSIRQEDDGKRLLFECRIQADPAP--TVIWSHS--GVQ------VK---------EDKRHKFSIDKDGHSYFASLEIID  178 (254)
Q Consensus       118 ~~~~~~~~~g~~~~l~C~~~~~~~~--~~~W~~~--~~~------~~---------~~~~~~~~~~~~~~~~~~~l~i~~  178 (254)
                      .+....+.+|+++.|.|.+.|+...  .+.|+|.  |+.      +.         ..-..++....+.......|.|.+
T Consensus         6 esg~~~~kPg~sl~LsC~~SG~s~~~~~~~WvRQ~PGkgLEw~g~i~~~~~~~~ya~s~kgR~tiS~D~s~~tvyL~~~s   85 (116)
T d1mjuh1           6 QPGAELVKPGASVKLSCKASGYTFTNYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDTSSSTAYMQLSS   85 (116)
T ss_dssp             CCSEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECS
T ss_pred             eECCcEECCCCCEEEEEEEccCccccCceEeeeeCCCcceeeeeecCccccccccccccceeeeEecccccceeEecccc
Confidence            3455678889999999999986533  4778772  111      11         111113333333333334799999


Q ss_pred             CCCCCceeEEEEE
Q psy7036         179 VTIEDAGKYKVTA  191 (254)
Q Consensus       179 ~~~~d~G~y~C~~  191 (254)
                      ++.+|.+.|.|.-
T Consensus        86 L~~eDtAvYYCAr   98 (116)
T d1mjuh1          86 LTSDDSAVYYCAN   98 (116)
T ss_dssp             CCGGGCEEEEEEE
T ss_pred             cCCCCceEEEEcc
Confidence            9999999999964

>d7fabh1 b.1.1.1 (H:1-116) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=98.12  E-value=1.1e-05  Score=48.21  Aligned_cols=72  Identities=15%  Similarity=0.193  Sum_probs=46.0

Q ss_pred             eeecCCCeEEEEEEEeeCCCC--eEEEEEC--CEec------c--------cCCcceEEEcCCCCceeeEEEEccCCCCC
Q psy7036         122 RQEDDGKRLLFECRIQADPAP--TVIWSHS--GVQV------K--------EDKRHKFSIDKDGHSYFASLEIIDVTIED  183 (254)
Q Consensus       122 ~~~~~g~~~~l~C~~~~~~~~--~~~W~~~--~~~~------~--------~~~~~~~~~~~~~~~~~~~l~i~~~~~~d  183 (254)
                      ..+.+|++++|.|.+.|+...  .+.|++.  |+.+      .        ..-..++....+.......|.|++++.+|
T Consensus        10 ~lvkPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwlg~i~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~~L~~eD   89 (116)
T d7fabh1          10 GLVRPSQTLSLTCTVSGTSFDDYYWTWVRQPPGRGLEWIGYVFYTGTTLLDPSLRGRVTMLVNTSKNQFSLRLSSVTAAD   89 (116)
T ss_dssp             SEECTTSCEEEEEEEESSCSTTSEEEEEEECTTSCCEEEEEECTTSCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             ceECCCCCEEEEEEEeeecCCCCcceeceECCCCcceeeeeecccccceeccceeecceeecccchhhhhcccccccccc
Confidence            456789999999999886433  5788873  1111      1        11111233332222223479999999999


Q ss_pred             ceeEEEEEEc
Q psy7036         184 AGKYKVTAKN  193 (254)
Q Consensus       184 ~G~y~C~~~~  193 (254)
                      ++.|.|....
T Consensus        90 tAvYyCAr~~   99 (116)
T d7fabh1          90 TAVYYCARNL   99 (116)
T ss_dssp             CEEEEEEEEC
T ss_pred             ceEEEeeeec
Confidence            9999997644

>d2p49b1 b.1.1.1 (B:1-121) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=98.12  E-value=1.2e-05  Score=48.44  Aligned_cols=72  Identities=18%  Similarity=0.229  Sum_probs=46.0

Q ss_pred             ceeecCCCeEEEEEEEeeC--CCCceEEEeC--CE------EeeeC---------CcceEEEeecCCcceEEEEEEeccC
Q psy7036          17 LRQEDEGNRLIFECQLLCN--PKPDIVWFRG--ET------QLSED---------TRTVMKTTPIGTNKYLVALELDDVI   77 (254)
Q Consensus        17 ~~~v~~g~~v~l~C~~~~~--~~~~v~W~~~--~~------~~~~~---------~~~~~~~~~~~~~~~~~~l~i~~~~   77 (254)
                      ...+.+|++++|+|.+.|.  ....+.|+|.  |+      .+...         -+.++....+. ......|.|.+++
T Consensus         9 ~~lvkPg~sl~LsC~~SG~s~s~y~~~WvRQ~PGkglewv~~i~~~~~~~~Y~~s~kgRftiSrD~-s~~t~yLq~~~L~   87 (121)
T d2p49b1           9 GGLVQAGGSLRLSCAASGYAYTYIYMGWFRQAPGKEREGVAAMDSGGGGTLYADSVKGRFTISRDK-GKNTVYLQMDSLK   87 (121)
T ss_dssp             CEEEETTCCEEEEEEEESCSSCCSEEEEEEECTTSCCEEEEEEETTSCSCEECGGGTTTEEEECTT-STTEEEEEECSCC
T ss_pred             CceECCCCCeEEEEEEcCCCcccCceeeccCCCCCceeeeeecCCcccccccccceeEeEEEeecC-CceEEEEEeeecc
Confidence            3468899999999999874  3456789873  11      11111         11123222222 2223469999999


Q ss_pred             CCCCeEEEEEEE
Q psy7036          78 ETDAGLYKVKAK   89 (254)
Q Consensus        78 ~~d~G~Y~C~~~   89 (254)
                      .+|++.|.|...
T Consensus        88 ~eDtAvYYCAr~   99 (121)
T d2p49b1          88 PEDTATYYCAAG   99 (121)
T ss_dssp             GGGCEEEEEEES
T ss_pred             ccceeEEeeecc
Confidence            999999999754

>d1etzb1 b.1.1.1 (B:1-126) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]

Probab=98.12  E-value=1.7e-05  Score=48.50  Aligned_cols=69  Identities=16%  Similarity=0.221  Sum_probs=43.4

Q ss_pred             eeecCCCeEEEEEEEeeCC----CCceEEEeC--CE---Ee---e--------e--CCcceEEEeecCCcceEEEEEEec
Q psy7036          18 RQEDEGNRLIFECQLLCNP----KPDIVWFRG--ET---QL---S--------E--DTRTVMKTTPIGTNKYLVALELDD   75 (254)
Q Consensus        18 ~~v~~g~~v~l~C~~~~~~----~~~v~W~~~--~~---~~---~--------~--~~~~~~~~~~~~~~~~~~~l~i~~   75 (254)
                      ..+.+|++++|+|.+.|..    ...+.|+|.  |+   -+   .        .  ..++.+..  +... -...|.|.+
T Consensus        10 ~lvkPg~sv~LsC~~SG~s~s~~~~~~~W~RQ~pg~~le~l~~i~~~~~~~~~~s~~~Rftis~--d~s~-~t~~L~i~~   86 (126)
T d1etzb1          10 GILQPSQTLSLTCSFSGFSLSTSGMGVGWIRQPSGEGLEWLADIWWNDKKYYNPSLKSRLTVSK--DTSS-NQVFLKITS   86 (126)
T ss_dssp             SEECTTCCEEEEEEEESSCTTSTTEEEEEEEEETTTCCEEEEEEETTCCEEECTTTTTTEEEEE--ETTT-TEEEEEECS
T ss_pred             ceECCCCCEEEEEEEeCCccCCCCCCCeEEeCCCCccceEeeecCCCCCceeceeeeEeeEEec--ccCC-cEEEcceec
Confidence            4688999999999998732    234679862  11   11   0        0  11222222  2111 234799999


Q ss_pred             cCCCCCeEEEEEEE
Q psy7036          76 VIETDAGLYKVKAK   89 (254)
Q Consensus        76 ~~~~d~G~Y~C~~~   89 (254)
                      ++.+|++.|.|...
T Consensus        87 l~~eDtAvYyCAr~  100 (126)
T d1etzb1          87 VDTSDTATYHCARR  100 (126)
T ss_dssp             CCGGGCEEEEEEEE
T ss_pred             ccccccceEEEEEe
Confidence            99999999999754

>d1jnhb1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.12  E-value=7.8e-06  Score=48.90  Aligned_cols=72  Identities=17%  Similarity=0.265  Sum_probs=46.2

Q ss_pred             eeeecCCCeEEEEEEEeeCCCC--eEEEEECC--Ee------cc---------cCCcceEEEcCCCCceeeEEEEccCCC
Q psy7036         121 IRQEDDGKRLLFECRIQADPAP--TVIWSHSG--VQ------VK---------EDKRHKFSIDKDGHSYFASLEIIDVTI  181 (254)
Q Consensus       121 ~~~~~~g~~~~l~C~~~~~~~~--~~~W~~~~--~~------~~---------~~~~~~~~~~~~~~~~~~~l~i~~~~~  181 (254)
                      ...+.+|+++.|.|.+.|+...  .+.|+|..  +.      +.         ..-..++.+..+.......|.|.+++.
T Consensus         9 ~~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglewvg~i~~~~~~t~ya~s~kgRfTiS~D~s~~t~yLq~~~L~~   88 (117)
T d1jnhb1           9 AELARPGASVKLSCRTSGYSFTTYWMQWVRQRPGQGLEWIAAIYPGDDDARYTQKFKGKATLTADRSSSIVYLQLNSLTS   88 (117)
T ss_dssp             CEECCTTCCEEEEEEEESSCSSSSEEEEEEECTTSCEEEEEEEEGGGTEEEECTTTTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CceECCCCCEEEEEEEcCCCCCCCceeeeeeCCCCcceeeeccCccccccccccceeEEEEEeccCccceeeecccccCC
Confidence            3456789999999999986543  47888731  11      11         111123333333333334799999999


Q ss_pred             CCceeEEEEEE
Q psy7036         182 EDAGKYKVTAK  192 (254)
Q Consensus       182 ~d~G~y~C~~~  192 (254)
                      +|.+.|.|...
T Consensus        89 eDTAvYYCAr~   99 (117)
T d1jnhb1          89 EDSAVYSCSRG   99 (117)
T ss_dssp             GGCEEEEEEEE
T ss_pred             CcceEEEEeec
Confidence            99999999653

>d1yedb1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.12  E-value=1.8e-05  Score=47.72  Aligned_cols=74  Identities=11%  Similarity=0.123  Sum_probs=46.5

Q ss_pred             CCceeecCCCeEEEEEEEeeCC--CCceEEEeC--CE------Eeee---------CCcceEEEeecCCcceEEEEEEec
Q psy7036          15 PQLRQEDEGNRLIFECQLLCNP--KPDIVWFRG--ET------QLSE---------DTRTVMKTTPIGTNKYLVALELDD   75 (254)
Q Consensus        15 ~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~--~~------~~~~---------~~~~~~~~~~~~~~~~~~~l~i~~   75 (254)
                      .....+.+|+++.|+|.+.|..  ...+.|+|.  |+      .+..         .-+.++....+.. .....|.+.+
T Consensus         7 sG~~~~kPG~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwv~~i~~~~~~~~y~~s~kgR~tiS~D~s-~~t~~L~~~s   85 (124)
T d1yedb1           7 SGPELVRPGTSVKLSCKTSGYIFTSYWIHWLKQSSGQGLEWIARIYPGTGGTYYNEKFKGKATLTADKS-SSTAYMQLSS   85 (124)
T ss_dssp             CCCEEECTTCEEEEEEEEESSCGGGSCEEEEEECSSSCCEEEEEEETTTTEEEECGGGBTTEEEEEETT-TTEEEEEEES
T ss_pred             eCCceECCCCCEEEEEEEcCCCccCCccccceECCCCceeeeeeccccccccccccccceeEEEEccCC-cceEEecccc
Confidence            3445688999999999998753  456888872  11      1111         1112222222211 2234699999


Q ss_pred             cCCCCCeEEEEEEE
Q psy7036          76 VIETDAGLYKVKAK   89 (254)
Q Consensus        76 ~~~~d~G~Y~C~~~   89 (254)
                      ++.+|.+.|.|...
T Consensus        86 L~~eDTAvYYCAR~   99 (124)
T d1yedb1          86 LKSEDSAVYFCTRW   99 (124)
T ss_dssp             CCGGGCEEEEEEEC
T ss_pred             cCCCcceEEEeccc
Confidence            99999999999754

>d1nlbh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.12  E-value=6e-06  Score=49.44  Aligned_cols=70  Identities=17%  Similarity=0.293  Sum_probs=45.0

Q ss_pred             eeeecCCCeEEEEEEEeeCCC--CeEEEEECC--Ee------ccc---------CCcceEEEcCCCCceeeEEEEccCCC
Q psy7036         121 IRQEDDGKRLLFECRIQADPA--PTVIWSHSG--VQ------VKE---------DKRHKFSIDKDGHSYFASLEIIDVTI  181 (254)
Q Consensus       121 ~~~~~~g~~~~l~C~~~~~~~--~~~~W~~~~--~~------~~~---------~~~~~~~~~~~~~~~~~~l~i~~~~~  181 (254)
                      ...+.+|+.+.|.|.+.|+..  -.+.|+|..  +.      +..         .-..++....+.......|.|++++.
T Consensus         9 ~~~~kPG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwvg~i~~~~~~~~ya~~~kgRftisrD~s~~tvyL~~~~L~~   88 (118)
T d1nlbh1           9 PELKKPGETVKISCKASGYTFTDFSMHWVNQAPGKGLNWMGWVNTETGEPTYADDFKGRFAFSLETSASTAYLQINSLKN   88 (118)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGSSSEEEEEEGGGTEEEEEECSCCG
T ss_pred             CceECCCCCEEEEEEEcCCCCCCCceeccccCCCccceeeeecCcccccchhhhheeeeeEEEecCCceeEEeeeeeccc
Confidence            355788999999999988643  247888731  11      111         11123333333333334799999999


Q ss_pred             CCceeEEEE
Q psy7036         182 EDAGKYKVT  190 (254)
Q Consensus       182 ~d~G~y~C~  190 (254)
                      +|++.|.|.
T Consensus        89 eDtAvYYCA   97 (118)
T d1nlbh1          89 EDTATYFCA   97 (118)
T ss_dssp             GGCEEEEEE
T ss_pred             CcceEEEEe
Confidence            999999995

>d1zvya1 b.1.1.1 (A:2-125) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=98.12  E-value=1.2e-05  Score=48.80  Aligned_cols=69  Identities=22%  Similarity=0.372  Sum_probs=45.4

Q ss_pred             eeecCCCeEEEEEEEeeCC--CCceEEEeC--CE------Eeee-----------CCcceEEEeecCCcceEEEEEEecc
Q psy7036          18 RQEDEGNRLIFECQLLCNP--KPDIVWFRG--ET------QLSE-----------DTRTVMKTTPIGTNKYLVALELDDV   76 (254)
Q Consensus        18 ~~v~~g~~v~l~C~~~~~~--~~~v~W~~~--~~------~~~~-----------~~~~~~~~~~~~~~~~~~~l~i~~~   76 (254)
                      ..+.+|++++|+|.+.|..  ...+.|+|.  |+      .+..           ..++.+....   ......|++.++
T Consensus         9 ~lvkpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewv~~i~~~~~~~~y~~s~kgR~tis~D~---s~~t~yLq~~sL   85 (124)
T d1zvya1           9 GSVQAGGSLRLSCAASGSTDSIEYMTWFRQAPGKAREGVAALYTHTGNTYYTDSVKGRFTISQDK---AKNMAYLRMDSV   85 (124)
T ss_dssp             EECCTTCCEEEEEEEESCSTTCCEEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEEG---GGTEEEEEECSC
T ss_pred             ceECCCCCeEEEEEEcCcccccccccccccCCccceEEEeecccccccceeccccccccEEeccc---ccceeeceeccc
Confidence            4688999999999998743  456889873  11      1111           1222222221   122347999999


Q ss_pred             CCCCCeEEEEEEE
Q psy7036          77 IETDAGLYKVKAK   89 (254)
Q Consensus        77 ~~~d~G~Y~C~~~   89 (254)
                      +.+|++.|.|...
T Consensus        86 ~~eDtAvYYCAr~   98 (124)
T d1zvya1          86 KSEDTAIYTCGAT   98 (124)
T ss_dssp             CGGGCEEEEEEEC
T ss_pred             cCCcceEEEEeec
Confidence            9999999999764

>d2jelh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.12  E-value=5.7e-06  Score=49.59  Aligned_cols=72  Identities=17%  Similarity=0.235  Sum_probs=45.9

Q ss_pred             CeeeecCCCeEEEEEEEeeCCCC--eEEEEECC--Ee------cc---------cCCcceEEEcCCCCceeeEEEEccCC
Q psy7036         120 SIRQEDDGKRLLFECRIQADPAP--TVIWSHSG--VQ------VK---------EDKRHKFSIDKDGHSYFASLEIIDVT  180 (254)
Q Consensus       120 ~~~~~~~g~~~~l~C~~~~~~~~--~~~W~~~~--~~------~~---------~~~~~~~~~~~~~~~~~~~l~i~~~~  180 (254)
                      ....+.+|+.+.|.|.+.|+...  .+.|+|..  +.      +.         ..-..++....+.......|.|.+++
T Consensus         8 g~~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglewlg~i~~~~~~~~y~~~~kgR~tiS~D~s~~t~~L~~~sL~   87 (118)
T d2jelh1           8 GPELVRPGVSVKISCKGSGYTFTTYAMHWVKQSHAKSLEWIGLISTYSGYTNYNQKFKGKATMTVDKSSSTAYMELARLT   87 (118)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSEEEEEEECSSSSEEEEEEECTTTCCEEECGGGBTTEEEEEEGGGTEEEEEECSCC
T ss_pred             CCceECCCCCEEEEEEEcCCCCCCCceecceeCCCcccccccccCCcCCcchhhhhhcccEEEecccCcceEeecccccc
Confidence            34567789999999999886533  47888731  11      11         11112333333333333479999999


Q ss_pred             CCCceeEEEEE
Q psy7036         181 IEDAGKYKVTA  191 (254)
Q Consensus       181 ~~d~G~y~C~~  191 (254)
                      .+|++.|.|..
T Consensus        88 ~eDTAvYYCAr   98 (118)
T d2jelh1          88 SEDSAIYYCAR   98 (118)
T ss_dssp             GGGCEEEEEEE
T ss_pred             cCcceeeeEEE
Confidence            99999999953

>d1ai1h1 b.1.1.1 (H:1-112) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]

Probab=98.12  E-value=9.2e-06  Score=49.03  Aligned_cols=70  Identities=13%  Similarity=0.171  Sum_probs=45.0

Q ss_pred             ceeecCCCeEEEEEEEeeCC----CCceEEEeC--CEE------eeeC----------CcceEEEeecCCcceEEEEEEe
Q psy7036          17 LRQEDEGNRLIFECQLLCNP----KPDIVWFRG--ETQ------LSED----------TRTVMKTTPIGTNKYLVALELD   74 (254)
Q Consensus        17 ~~~v~~g~~v~l~C~~~~~~----~~~v~W~~~--~~~------~~~~----------~~~~~~~~~~~~~~~~~~l~i~   74 (254)
                      ...+.+|++++|+|.+.|..    ...+.|+|.  |+.      +...          .++.+..  +. ..-...|.|.
T Consensus         9 ~~~vkPg~sl~LsC~~SG~s~~~s~y~~~W~RQ~PGkglEwl~~i~~~g~t~y~~s~kgRfTiSr--D~-s~n~~~L~~~   85 (120)
T d1ai1h1           9 PAVIKPSQSLSLTCIVSGFSITRTNYCWHWIRQAPGKGLEWMGRICYEGSIYYSPSIKSRSTISR--DT-SLNKFFIQLI   85 (120)
T ss_dssp             CSEECSSSCEEEEEEEESSCTTSTTEEEEEEEECTTSCEEEEEEEETTSCEEECHHHHTTEEEEE--ET-TTTEEEEEES
T ss_pred             CceECCCCCEEEEEEEcccccccCccccCcccCCCcccceeeeecccccchhhchhhcccceecc--cc-ccceeeccee
Confidence            44688999999999998743    234789873  211      1111          2222222  21 1223479999


Q ss_pred             ccCCCCCeEEEEEEE
Q psy7036          75 DVIETDAGLYKVKAK   89 (254)
Q Consensus        75 ~~~~~d~G~Y~C~~~   89 (254)
                      +++.+|++.|.|...
T Consensus        86 sL~~eDtAvYYCAr~  100 (120)
T d1ai1h1          86 SVTNEDTAMYYCSRE  100 (120)
T ss_dssp             SCCGGGCEEEEEEEE
T ss_pred             eeeccceeEEEEEec
Confidence            999999999999754

>d2fb4h1 b.1.1.1 (H:1-119) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 3 [TaxId: 9606]

Probab=98.12  E-value=2.2e-05  Score=47.76  Aligned_cols=73  Identities=15%  Similarity=0.229  Sum_probs=45.9

Q ss_pred             ceeecCCCeEEEEEEEeeCC--CCceEEEeC--CEE------eee---------CCcceEEEeecCCcceEEEEEEeccC
Q psy7036          17 LRQEDEGNRLIFECQLLCNP--KPDIVWFRG--ETQ------LSE---------DTRTVMKTTPIGTNKYLVALELDDVI   77 (254)
Q Consensus        17 ~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~--~~~------~~~---------~~~~~~~~~~~~~~~~~~~l~i~~~~   77 (254)
                      ...+.+|++++|.|.+.|..  ...+.|+|.  |+.      +..         .-+.++....+.. .....|+|.+++
T Consensus         9 ~~~~kpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEw~~~i~~~~~~~~y~~~~kgR~Tis~D~s-~~t~yL~~~~L~   87 (127)
T d2fb4h1           9 GGVVQPGRSLRLSCSSSGFIFSSYAMYWVRQAPGKGLEWVAIIWDDGSDQHYADSVKGRFTISRNDS-KNTLFLQMDSLR   87 (127)
T ss_dssp             CCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECGGGBTTEEEEEETT-TTEEEEEECSCC
T ss_pred             CceECCCCCeEEEEEECCCCccCCceeeeecCCCcceeeeeecccccccchhcccccceEEEeccCC-ccEEEeeeeeee
Confidence            34678999999999998743  446788872  111      111         1112222222221 223469999999


Q ss_pred             CCCCeEEEEEEEc
Q psy7036          78 ETDAGLYKVKAKN   90 (254)
Q Consensus        78 ~~d~G~Y~C~~~~   90 (254)
                      .+|++.|.|....
T Consensus        88 ~eDTA~YYCAr~~  100 (127)
T d2fb4h1          88 PEDTGVYFCARDG  100 (127)
T ss_dssp             GGGCEEEEEEEEC
T ss_pred             ecceeEEEEEEec
Confidence            9999999997653

>d1uvqa1 b.1.1.2 (A:85-183) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=98.12  E-value=1.3e-05  Score=47.24  Aligned_cols=71  Identities=14%  Similarity=0.168  Sum_probs=44.5

Q ss_pred             cCCCeEEEEEEEeeCCC--CeEEEEECCEecccCC-cceEEEcCCCC-ceeeEEEEccCCCCCceeEEEEEEcCCCcc
Q psy7036         125 DDGKRLLFECRIQADPA--PTVIWSHSGVQVKEDK-RHKFSIDKDGH-SYFASLEIIDVTIEDAGKYKVTAKNELGES  198 (254)
Q Consensus       125 ~~g~~~~l~C~~~~~~~--~~~~W~~~~~~~~~~~-~~~~~~~~~~~-~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~  198 (254)
                      ..|+..+|.|.+.++.+  ..++|.+||..+.... ........++. ...+.|.+..   ++...|+|.+.+.....
T Consensus        17 ~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~~~dgtf~~~s~l~v~~---~~~~~ytC~V~H~sl~~   91 (99)
T d1uvqa1          17 TLGQPNTLICLVDNIFPPVVNITWLSNGQSVTEGVSETSFLSKSDHSFFKISYLTFLP---SADEIYDCKVEHWGLDQ   91 (99)
T ss_dssp             CTTSCEEEEEEEEEECSSCCEEEEEETTEEECTTEEECCCEECTTSCEEEEEEEEECC---CTTCCEEEEEECTTSSS
T ss_pred             cCCCcEEEEEEEEEEECCCCEEEEEECCEeccCCcEecceEECCCCCEEEEEEEEEcC---CCCCEEEEEEEeCCCCC
Confidence            34677899999999743  4699999999875431 11222333332 3334555543   34458999999865443

>d2b1hh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=98.11  E-value=1.3e-05  Score=48.53  Aligned_cols=73  Identities=16%  Similarity=0.219  Sum_probs=46.6

Q ss_pred             CCCceeecCCCeEEEEEEEeeCC--CCceEEEeC--CEE------eee-----------CCcceEEEeecCCcceEEEEE
Q psy7036          14 KPQLRQEDEGNRLIFECQLLCNP--KPDIVWFRG--ETQ------LSE-----------DTRTVMKTTPIGTNKYLVALE   72 (254)
Q Consensus        14 ~~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~--~~~------~~~-----------~~~~~~~~~~~~~~~~~~~l~   72 (254)
                      ++....+.+|++++|+|.+.|..  ...+.|+|.  |+.      +..           ..++.+..  +. ......|.
T Consensus         6 esg~~~~kpg~sl~LsC~~SG~~~~~~~~~W~RQ~PGkglewig~i~~~~~~~~ya~s~kgR~tiSr--D~-s~~t~yL~   82 (124)
T d2b1hh1           6 QSGAEVKKSGESLKISCQTSGYSFSDYWIGWVRQMPGKGLEWMGIFYPGDSDSRYSPSFEGQVTMSA--DR-STNTAHLQ   82 (124)
T ss_dssp             ECCCEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECTTTTTTCEEEE--ET-TTTEEEEE
T ss_pred             eECCceECCCCCEEEEEEEcCCCCcCCcCccceeCCCcceeeeeecCcccccccccccceeeEEEee--cC-CCcEEEEe
Confidence            33445789999999999998854  345788872  111      111           12222222  21 12234799


Q ss_pred             EeccCCCCCeEEEEEEE
Q psy7036          73 LDDVIETDAGLYKVKAK   89 (254)
Q Consensus        73 i~~~~~~d~G~Y~C~~~   89 (254)
                      +.+++.+|.+.|.|...
T Consensus        83 ~~~L~~eDTA~YYCAR~   99 (124)
T d2b1hh1          83 WSSLKPSDTALYYCARL   99 (124)
T ss_dssp             ESSCCGGGCEEEEEEEE
T ss_pred             eeccccccceEEEEeec
Confidence            99999999999999643

>d2ck0h1 b.1.1.1 (H:1-106) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=98.10  E-value=7.4e-06  Score=48.34  Aligned_cols=72  Identities=18%  Similarity=0.335  Sum_probs=46.3

Q ss_pred             eeeecCCCeEEEEEEEeeCCCC--eEEEEEC--CEe------cc-----------cCCcceEEEcCCCCceeeEEEEccC
Q psy7036         121 IRQEDDGKRLLFECRIQADPAP--TVIWSHS--GVQ------VK-----------EDKRHKFSIDKDGHSYFASLEIIDV  179 (254)
Q Consensus       121 ~~~~~~g~~~~l~C~~~~~~~~--~~~W~~~--~~~------~~-----------~~~~~~~~~~~~~~~~~~~l~i~~~  179 (254)
                      ...+.+|++++|.|.+.|+...  .+.|++.  |+.      +.           ..-..++.+..+.......|.|+++
T Consensus         9 ~~~vkPG~Sl~LsC~~SG~t~~~~~~~WvRQ~PGkglEw~g~i~~~~~~~~~~ya~~~kgR~tiS~D~s~~t~~L~i~sL   88 (109)
T d2ck0h1           9 GGLVQPRGSLKLSCAASGFTFNTDAMNWVRQAPGKGLEWVARIRSKGFNFATYYADSVRDRFTISRDDSQSMLYLQMNNL   88 (109)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECCGGGTTCEEECTTTTTTEEEEEETTTTEEEEEECSC
T ss_pred             CCeECCCCCeEEEEEECCCcccccccccceeCCCcceecccccccccccccceeccccccCceeccccccceeEecccCC
Confidence            3567789999999999886433  4788873  111      11           1111133333333333357999999


Q ss_pred             CCCCceeEEEEEE
Q psy7036         180 TIEDAGKYKVTAK  192 (254)
Q Consensus       180 ~~~d~G~y~C~~~  192 (254)
                      +.+|++.|.|.-.
T Consensus        89 ~~eDTAvYYCAr~  101 (109)
T d2ck0h1          89 KTEDTGIYYCVRG  101 (109)
T ss_dssp             CGGGCEEEEEEEE
T ss_pred             CHhHCEEEEEEEc
Confidence            9999999999743

>d1oari_ b.1.1.1 (I:) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.10  E-value=1.5e-05  Score=46.74  Aligned_cols=69  Identities=17%  Similarity=0.230  Sum_probs=40.5

Q ss_pred             CCCeEEEEEEEeeCCCC--eEEEEECC--Eec------c---------cCCcceEEEcCCCCceeeEEEEccCCCCCcee
Q psy7036         126 DGKRLLFECRIQADPAP--TVIWSHSG--VQV------K---------EDKRHKFSIDKDGHSYFASLEIIDVTIEDAGK  186 (254)
Q Consensus       126 ~g~~~~l~C~~~~~~~~--~~~W~~~~--~~~------~---------~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~  186 (254)
                      +|++++|.|.+.|+...  .+.|+|..  +.+      .         ..-..++....+.......|.|.+++.+|.+.
T Consensus         1 PG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwl~~i~~~~~~~~y~~~~~~R~tiS~D~s~~t~~L~~~sL~~eDTAv   80 (103)
T d1oari_           1 PGASVKLSCKASGYTFTSYWMHWVKQRPGRGLEWIGRIDPNGGGTKYNEKFKSKATLTVDKPSSTAYMQLSSLTSEDSAV   80 (103)
T ss_dssp             CCCCEEEEEECCSSCSTTSEEEEEEEC----CEEEEEEC----CEEECTTTTTTEEEEC----CEEEEEECCC---CCSE
T ss_pred             CCCCeEEEEEEECCChhcCceeeEEeCCCCceEeeeeccccccccccccceeeceEEeccccccEEEeeeeeccccccEE
Confidence            48899999999886433  58888732  111      1         11223344444443344579999999999999


Q ss_pred             EEEEEEcC
Q psy7036         187 YKVTAKNE  194 (254)
Q Consensus       187 y~C~~~~~  194 (254)
                      |.|.....
T Consensus        81 YYCAr~~~   88 (103)
T d1oari_          81 YYCARMWY   88 (103)
T ss_dssp             EEEEEEEC
T ss_pred             EEeEEECC
Confidence            99976443

>d1n4xl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=98.10  E-value=1.2e-05  Score=48.79  Aligned_cols=74  Identities=20%  Similarity=0.226  Sum_probs=46.3

Q ss_pred             CCCeeeecCCCeEEEEEEEeeCC-----CCeEEEEECC--Ee---c-------ccCCcceEEEcCCCCceeeEEEEccCC
Q psy7036         118 KPSIRQEDDGKRLLFECRIQADP-----APTVIWSHSG--VQ---V-------KEDKRHKFSIDKDGHSYFASLEIIDVT  180 (254)
Q Consensus       118 ~~~~~~~~~g~~~~l~C~~~~~~-----~~~~~W~~~~--~~---~-------~~~~~~~~~~~~~~~~~~~~l~i~~~~  180 (254)
                      .+..+.+.+|+.++|.|...+..     ...+.||+..  +.   +       ......++.....+.  ...|.|.++.
T Consensus         8 ~P~s~~~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~fs~~~~~~--~~~L~I~~~~   85 (113)
T d1n4xl_           8 TPLYLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGT--DFTLKISRVE   85 (113)
T ss_dssp             ECSEEEECTTCCEEEEEEESSCCCCTTSCCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEECSS--EEEEEESSCC
T ss_pred             cCCEEEECCCCCEEEEEEeccccccCCCceEeEEEecCCCCccEEEEEecCCCccccCCCeeeeccCC--cccCccCCCC
Confidence            34567788999999999975421     2358999731  11   0       011111222222222  2489999999


Q ss_pred             CCCceeEEEEEEc
Q psy7036         181 IEDAGKYKVTAKN  193 (254)
Q Consensus       181 ~~d~G~y~C~~~~  193 (254)
                      .+|+|.|.|...+
T Consensus        86 ~~DsavYyCa~~~   98 (113)
T d1n4xl_          86 AEDLGIYYCFQGS   98 (113)
T ss_dssp             GGGCEEEEEEECS
T ss_pred             cccCEEEEEEECC
Confidence            9999999996543

>d1oari_ b.1.1.1 (I:) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.10  E-value=2e-05  Score=46.27  Aligned_cols=69  Identities=13%  Similarity=0.163  Sum_probs=39.0

Q ss_pred             CCCeEEEEEEEeeCC--CCceEEEeC--CEEe------e---------eCCcceEEEeecCCcceEEEEEEeccCCCCCe
Q psy7036          22 EGNRLIFECQLLCNP--KPDIVWFRG--ETQL------S---------EDTRTVMKTTPIGTNKYLVALELDDVIETDAG   82 (254)
Q Consensus        22 ~g~~v~l~C~~~~~~--~~~v~W~~~--~~~~------~---------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G   82 (254)
                      +|++++|+|.+.|..  ...+.|+|.  |+.+      .         ..-+.++....+. ......|+|.+++.+|.+
T Consensus         1 PG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwl~~i~~~~~~~~y~~~~~~R~tiS~D~-s~~t~~L~~~sL~~eDTA   79 (103)
T d1oari_           1 PGASVKLSCKASGYTFTSYWMHWVKQRPGRGLEWIGRIDPNGGGTKYNEKFKSKATLTVDK-PSSTAYMQLSSLTSEDSA   79 (103)
T ss_dssp             CCCCEEEEEECCSSCSTTSEEEEEEEC----CEEEEEEC----CEEECTTTTTTEEEEC-----CEEEEEECCC---CCS
T ss_pred             CCCCeEEEEEEECCChhcCceeeEEeCCCCceEeeeeccccccccccccceeeceEEeccc-cccEEEeeeeeccccccE
Confidence            589999999998753  446889873  2211      1         1111223222221 122347999999999999


Q ss_pred             EEEEEEEcC
Q psy7036          83 LYKVKAKNK   91 (254)
Q Consensus        83 ~Y~C~~~~~   91 (254)
                      .|.|.....
T Consensus        80 vYYCAr~~~   88 (103)
T d1oari_          80 VYYCARMWY   88 (103)
T ss_dssp             EEEEEEEEC
T ss_pred             EEEeEEECC
Confidence            999976543

>d1jpth1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=98.10  E-value=8.9e-06  Score=48.59  Aligned_cols=72  Identities=15%  Similarity=0.196  Sum_probs=46.4

Q ss_pred             eeeecCCCeEEEEEEEeeCCC--CeEEEEECC--Ee------cc---------cCCcceEEEcCCCCceeeEEEEccCCC
Q psy7036         121 IRQEDDGKRLLFECRIQADPA--PTVIWSHSG--VQ------VK---------EDKRHKFSIDKDGHSYFASLEIIDVTI  181 (254)
Q Consensus       121 ~~~~~~g~~~~l~C~~~~~~~--~~~~W~~~~--~~------~~---------~~~~~~~~~~~~~~~~~~~l~i~~~~~  181 (254)
                      ...+.+|+++.|.|.+.|+..  -.+.|+|..  +.      +.         ..-..++.+..+.......|.|.+++.
T Consensus         9 ~~~vkpg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewvg~i~~~~~~~~ya~s~kgR~tiSrD~s~nt~yL~m~~L~~   88 (117)
T d1jpth1           9 GGLVQPGGSLRLSCAASGFNIKEYYMHWVRQAPGKGLEWVGLIDPEQGNTIYDPKFQDRATISADNSKNTAYLQMNSLRA   88 (117)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECTTTCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCG
T ss_pred             CceECCCCCEEEEEEEcCCCCcCCceEcceeCCCcceEeeeecccccccccccccceeeEEEEeccccceEEecccccCC
Confidence            346778999999999998653  357888731  10      11         111223333333333335799999999


Q ss_pred             CCceeEEEEEE
Q psy7036         182 EDAGKYKVTAK  192 (254)
Q Consensus       182 ~d~G~y~C~~~  192 (254)
                      +|.+.|.|...
T Consensus        89 eDTAvYYCAr~   99 (117)
T d1jpth1          89 EDTAVYYCARD   99 (117)
T ss_dssp             GGCEEEEEEEE
T ss_pred             CCceEEEEeec
Confidence            99999999654

>d1r0ah1 b.1.1.1 (H:1-123) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]

Probab=98.10  E-value=3.1e-05  Score=46.91  Aligned_cols=72  Identities=13%  Similarity=0.164  Sum_probs=44.2

Q ss_pred             ceeecCCCeEEEEEEEeeCC--C--CceEEEeC--CE---Ee---eeC--------CcceEEEeecCCcceEEEEEEecc
Q psy7036          17 LRQEDEGNRLIFECQLLCNP--K--PDIVWFRG--ET---QL---SED--------TRTVMKTTPIGTNKYLVALELDDV   76 (254)
Q Consensus        17 ~~~v~~g~~v~l~C~~~~~~--~--~~v~W~~~--~~---~~---~~~--------~~~~~~~~~~~~~~~~~~l~i~~~   76 (254)
                      ...+.+|++++|+|.+.|..  .  ..+.|+|.  |+   -+   ...        -+.++....+. ......|+|.++
T Consensus         9 ~~~vkpg~sv~LsC~~SG~s~s~~~y~~~W~RQ~pGkgle~i~~i~~~~~~~y~~~~k~Rftis~D~-s~~~~~L~i~sl   87 (123)
T d1r0ah1           9 PGIVQPSQPFRLTCTFSGFSLSTSGIGVTWIRQPSGKGLEWLATIWWDDDNRYNPSLKSRLTVSKDT-SNNQAFLNMMTV   87 (123)
T ss_dssp             CSEECTTCCEEEEEEEESSCTTSTTEEEEEEEEETTSCCEEEEEEETTSCCEECTTTGGGEEEEEEG-GGTEEEEEECSC
T ss_pred             CceECCCCCeEEEEEEcCCccCCCCCeeeccccCCCcceEeeeeecCCccccccceeeEEEEccccc-cceeEEcceeec
Confidence            34688999999999998742  2  34679872  21   11   111        11122222211 112347999999


Q ss_pred             CCCCCeEEEEEEE
Q psy7036          77 IETDAGLYKVKAK   89 (254)
Q Consensus        77 ~~~d~G~Y~C~~~   89 (254)
                      +.+|++.|.|...
T Consensus        88 ~~eDsAvYyCAr~  100 (123)
T d1r0ah1          88 ETADTAIYYCAQS  100 (123)
T ss_dssp             CGGGCEEEEEEEE
T ss_pred             ccccceEEeeccc
Confidence            9999999999754

>d1ol0a_ b.1.1.1 (A:) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=98.10  E-value=2e-05  Score=47.58  Aligned_cols=71  Identities=17%  Similarity=0.294  Sum_probs=45.0

Q ss_pred             eeecCCCeEEEEEEEeeCC--CCceEEEeC--CEE------eee---------CCcceEEEeecCCcceEEEEEEeccCC
Q psy7036          18 RQEDEGNRLIFECQLLCNP--KPDIVWFRG--ETQ------LSE---------DTRTVMKTTPIGTNKYLVALELDDVIE   78 (254)
Q Consensus        18 ~~v~~g~~v~l~C~~~~~~--~~~v~W~~~--~~~------~~~---------~~~~~~~~~~~~~~~~~~~l~i~~~~~   78 (254)
                      ..+.+|++++|+|.+.|..  ...+.|+|.  |+.      +..         .-+.++....+. ......|.|.+++.
T Consensus        10 ~~vkpg~sl~LsC~~SG~s~s~y~~~W~RQ~PGkglewlg~i~~~~~~~~y~~~~kgR~tis~D~-s~~~~~L~i~sL~~   88 (121)
T d1ol0a_          10 GLVQPGGSLRLSCAASGFTFSSYAMSWFRQAPGKEREIVSAVSGSGGSTYYADSVRGRFTISRDN-SKNTLYLQMNSLRA   88 (121)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECTTSCCEEECGGGTTTEEEEEET-TTTEEEEEECSCCG
T ss_pred             ceECCCCCeEEEEEEcCcCCcCCceEcceeCCCcceeeeeecCCcccccccchheeeeeEEeccc-cceeEEeeeeeccc
Confidence            4678999999999998743  446788862  111      111         111122222221 12234799999999


Q ss_pred             CCCeEEEEEEE
Q psy7036          79 TDAGLYKVKAK   89 (254)
Q Consensus        79 ~d~G~Y~C~~~   89 (254)
                      +|++.|.|...
T Consensus        89 eDtAvYYCAr~   99 (121)
T d1ol0a_          89 EDTAVYYCARE   99 (121)
T ss_dssp             GGCEEEEEEEC
T ss_pred             ccceEEEEEEe
Confidence            99999999754

>d1nkra1 b.1.1.4 (A:6-101) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=98.10  E-value=1.7e-05  Score=46.39  Aligned_cols=68  Identities=12%  Similarity=0.140  Sum_probs=45.2

Q ss_pred             eecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcC
Q psy7036         123 QEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNE  194 (254)
Q Consensus       123 ~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~  194 (254)
                      .+..|.+++|.|... .....+.++|+|.......   ...........+.+.|.+++..|+|.|+|.....
T Consensus        12 ~V~~G~~VTl~C~~~-~~~~~f~L~keg~~~~~~~---~~~~~~~~~~~a~F~l~~v~~~~~G~Y~C~y~~~   79 (96)
T d1nkra1          12 LVKSEETVILQCWSD-VMFEHFLLHREGMFNDTLR---LIGEHHDGVSKANFSISRMTQDLAGTYRCYGSVT   79 (96)
T ss_dssp             EEETTCCEEEEEEES-SCCSEEEEEEESSSCEEEE---EECEEETTEEEEEEEESSCCGGGCEEEEEEEEBT
T ss_pred             ccCCCCcEEEEECCC-CCCCEEEEEECCCcCCcee---eeeeecCCceEEEEEEcccCcccCeEEEEEEEcC
Confidence            567899999999964 3455788999774321110   1111111223357999999999999999987654

>d2fbjh1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=98.09  E-value=2.7e-05  Score=46.62  Aligned_cols=74  Identities=19%  Similarity=0.243  Sum_probs=48.2

Q ss_pred             eeeecCCCeEEEEEEEeeCCCC--eEEEEEC--CEe------cc---------cCCcceEEEcCCCCceeeEEEEccCCC
Q psy7036         121 IRQEDDGKRLLFECRIQADPAP--TVIWSHS--GVQ------VK---------EDKRHKFSIDKDGHSYFASLEIIDVTI  181 (254)
Q Consensus       121 ~~~~~~g~~~~l~C~~~~~~~~--~~~W~~~--~~~------~~---------~~~~~~~~~~~~~~~~~~~l~i~~~~~  181 (254)
                      ...+.+|+.+.|.|.+.|+...  .+.|+|.  |+.      +.         ..-..++.+..+.......|.|.+++.
T Consensus         9 ~~~vkpg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglEwv~~i~~~~~~~~Y~~s~kgRftiSrD~s~nt~~L~~~sL~~   88 (118)
T d2fbjh1           9 GGLVQPGGSLKLSCAASGFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDNAKNSLYLQMSKVRS   88 (118)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECSSSCEEEEEECSCCG
T ss_pred             CceECCCCCEEEEEEECCccccCCceeeeeecCCcceeeeeecCcccccccccccceeeEEEeecCccceeeccccccCC
Confidence            3467789999999999886533  4778863  111      11         111223444444333345799999999


Q ss_pred             CCceeEEEEEEcC
Q psy7036         182 EDAGKYKVTAKNE  194 (254)
Q Consensus       182 ~d~G~y~C~~~~~  194 (254)
                      +|++.|.|.....
T Consensus        89 eDtAvYYCAr~~~  101 (118)
T d2fbjh1          89 EDTALYYCARLHY  101 (118)
T ss_dssp             GGCEEEEEEEEET
T ss_pred             CcceEEEeeEecC
Confidence            9999999986543

>d1nfde1 b.1.1.1 (E:2-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=98.09  E-value=3.4e-06  Score=50.72  Aligned_cols=73  Identities=21%  Similarity=0.276  Sum_probs=46.2

Q ss_pred             CCeeeecCCCeEEEEEEEeeCCCCeEEEEEC--CEe---cc-------cCCcceEEEcCCCCceeeEEEEccCCCCCcee
Q psy7036         119 PSIRQEDDGKRLLFECRIQADPAPTVIWSHS--GVQ---VK-------EDKRHKFSIDKDGHSYFASLEIIDVTIEDAGK  186 (254)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~--~~~---~~-------~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~  186 (254)
                      +..+.+.+|+.++|.|.........+.||+.  |+.   +.       .....++....++.  ...|.|.+++.+|+|.
T Consensus         6 P~s~~~~~G~svtl~C~~~~~~~~~i~WYrQ~~g~~p~~l~y~~~~~~~~~~~rf~~~~~~~--~~~L~I~~l~~~Dsa~   83 (108)
T d1nfde1           6 PSSASVTVGETVKITCSGDQLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTSGT--TATLTISGAQPEDEAA   83 (108)
T ss_dssp             CSEEEEETTSCCCEEEEETTGGGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEEETT--EEEEEETTCCGGGCSE
T ss_pred             CCeeEECCCCCEEEEEECCCCCCccEEEEecccccceeeeccccccccccccceeeecCCCC--EeeeeEcCccccCCce
Confidence            4567788999999999865433345889973  211   10       01111222222222  2479999999999999


Q ss_pred             EEEEEEc
Q psy7036         187 YKVTAKN  193 (254)
Q Consensus       187 y~C~~~~  193 (254)
                      |.|.+..
T Consensus        84 YyCA~~~   90 (108)
T d1nfde1          84 YYCLSSY   90 (108)
T ss_dssp             EEEEEEE
T ss_pred             EEEEeec
Confidence            9998764

>d1ad9b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=98.09  E-value=3.3e-05  Score=46.33  Aligned_cols=73  Identities=15%  Similarity=0.206  Sum_probs=45.6

Q ss_pred             CceeecCCCeEEEEEEEeeCC--CCceEEEeC--CEE------ee---------eCCcceEEEeecCCcceEEEEEEecc
Q psy7036          16 QLRQEDEGNRLIFECQLLCNP--KPDIVWFRG--ETQ------LS---------EDTRTVMKTTPIGTNKYLVALELDDV   76 (254)
Q Consensus        16 ~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~--~~~------~~---------~~~~~~~~~~~~~~~~~~~~l~i~~~   76 (254)
                      ....+++|++++|+|.+.|..  ...+.|+|.  |+-      +.         ..-+.++....+.. .-...|.+.++
T Consensus         8 g~~~vkpg~sl~LsC~vSG~s~~~~~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgRftiS~D~s-~nt~~L~m~~L   86 (120)
T d1ad9b1           8 GAEVKKPGSSVKVSCKASGYTFTDYYINWMRQAPGQGLEWIGWIDPGSGNTKYNEKFKGRATLTVDTS-TNTAYMELSSL   86 (120)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEEETTTTEEEECGGGBTTEEEEEETT-TTEEEEEECSC
T ss_pred             CCceECCCCCEEEEEEEcCCCCcCCccccceECCCccceeeeecCCcccceeeccceeeeEEEEecCc-ceEEecccccc
Confidence            345789999999999998743  345788762  111      11         11112222222111 12337999999


Q ss_pred             CCCCCeEEEEEEE
Q psy7036          77 IETDAGLYKVKAK   89 (254)
Q Consensus        77 ~~~d~G~Y~C~~~   89 (254)
                      +.+|.+.|.|...
T Consensus        87 ~~eDTAvYYCAr~   99 (120)
T d1ad9b1          87 RSEDTAFYFCARE   99 (120)
T ss_dssp             CGGGCEEEEEEEE
T ss_pred             CCCcceEEEEEEc
Confidence            9999999999754

>d1kcvh2 b.1.1.2 (H:117-217) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.09  E-value=3.6e-06  Score=50.00  Aligned_cols=74  Identities=8%  Similarity=0.088  Sum_probs=46.8

Q ss_pred             CCCeEEEEEEEeeCCC--CeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcceEE
Q psy7036         126 DGKRLLFECRIQADPA--PTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNAT  201 (254)
Q Consensus       126 ~g~~~~l~C~~~~~~~--~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~  201 (254)
                      .+..++|.|.+.++.+  ..|.|.+++........... ..++.+...+.|.|..-... .|.|+|.+.+........
T Consensus        19 ~~~~~tl~Cl~~gf~P~~i~v~W~~~~~~~~~~~~~~~-~~~g~~s~~S~L~v~~~~w~-~~~ytC~V~H~~~~~~v~   94 (101)
T d1kcvh2          19 AASAVTLGCLVKGYFPEPVTVAWNEGALSSGVLTVSAV-LQSGLYTLSSNTTVASGTWP-SASVTCLVAHPKSSTAAD   94 (101)
T ss_dssp             TCSEEEEEEEEEEEBSSCCEEEEGGGTCCTTEEECCCE-EETTEEEEEEEEEEETTTTT-TSCCEEEEEEGGGTEEEE
T ss_pred             CCCeEEEEEEEEEEeCCCCEEEEecCCCcccceeeeee-cCCCCEEEEEEEEEchhhcC-CCeEEEEEEeCCCCeeeE
Confidence            4678999999998533  46999887755322111111 22233455677888765553 568999999876554433

>d1um5h1 b.1.1.1 (H:3-119) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.09  E-value=8.6e-06  Score=48.83  Aligned_cols=73  Identities=19%  Similarity=0.232  Sum_probs=46.5

Q ss_pred             CeeeecCCCeEEEEEEEeeCCCC--eEEEEECC--Ee------ccc---------CCcceEEEcCCCCceeeEEEEccCC
Q psy7036         120 SIRQEDDGKRLLFECRIQADPAP--TVIWSHSG--VQ------VKE---------DKRHKFSIDKDGHSYFASLEIIDVT  180 (254)
Q Consensus       120 ~~~~~~~g~~~~l~C~~~~~~~~--~~~W~~~~--~~------~~~---------~~~~~~~~~~~~~~~~~~l~i~~~~  180 (254)
                      ....+.+|+.++|.|.+.|+...  .+.|+|..  +.      +..         .-..++....+.......|.|.+++
T Consensus         7 g~~~~kPG~sl~LsC~~SG~~~~~y~~~WvRQ~pGkglewl~~i~~~~~~~~y~~~~kgRftiS~D~s~~t~~L~m~sL~   86 (117)
T d1um5h1           7 GPVLVKPGGSVKMSCKASEYTLTSYLFQWVKQKSGQGLEWIGYIYPYNGGTRYNEKFRGKATLTSDKSSNTAYLELSSLT   86 (117)
T ss_dssp             CCEEECTTCCEEEEEEESSCCCSCCEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTCEEEEEETTTTEEEEEECSCC
T ss_pred             CCceECCCCCEEEEEEEccccCCCCcCccceeCCCccceeeeecCCccCccccccceeeeEEEEeccCceeEeecccccC
Confidence            34567889999999999886543  57888741  11      110         1112233332222223469999999


Q ss_pred             CCCceeEEEEEE
Q psy7036         181 IEDAGKYKVTAK  192 (254)
Q Consensus       181 ~~d~G~y~C~~~  192 (254)
                      .+|++.|.|...
T Consensus        87 ~eDtAvYYCAr~   98 (117)
T d1um5h1          87 SEDSAVYYCARS   98 (117)
T ss_dssp             GGGCEEEEEEEE
T ss_pred             CCcceEEEEeec
Confidence            999999999653

>d1dlfh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=98.09  E-value=3.6e-05  Score=46.20  Aligned_cols=73  Identities=16%  Similarity=0.237  Sum_probs=45.7

Q ss_pred             ceeecCCCeEEEEEEEeeCC--CCceEEEeC--CEEe------ee-----------CCcceEEEeecCCcceEEEEEEec
Q psy7036          17 LRQEDEGNRLIFECQLLCNP--KPDIVWFRG--ETQL------SE-----------DTRTVMKTTPIGTNKYLVALELDD   75 (254)
Q Consensus        17 ~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~--~~~~------~~-----------~~~~~~~~~~~~~~~~~~~l~i~~   75 (254)
                      ...+.+|++++|+|.+.|..  ...+.|+|.  |+-+      ..           .-+.++....+. ..-...|.|.+
T Consensus         9 ~~~vkpG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwv~~i~~~~~~~~~~ya~s~kgRftiS~D~-s~n~~~L~~~~   87 (120)
T d1dlfh_           9 GGLVQPGGSMKLSCATSGFTFSDAWMDWVRQSPEKGLEWVAEIRNKANNHATYYAESVKGRFTISRDD-SKRRVYLQMNT   87 (120)
T ss_dssp             CCEECTTCCEEEEEEEESSCTTTCEEEEEEEETTTEEEEEEEECCGGGTTCEEECTTTTTTEEEEEET-TTTEEEEEECS
T ss_pred             CceECCCCCeEEEEEECCccCcCCceEeeeeCCCcceeeeeeccccccccceeechhceecceeeccc-ccceeccceee
Confidence            34688999999999998743  456889872  2211      11           001122222211 11223699999


Q ss_pred             cCCCCCeEEEEEEEc
Q psy7036          76 VIETDAGLYKVKAKN   90 (254)
Q Consensus        76 ~~~~d~G~Y~C~~~~   90 (254)
                      ++.+|++.|.|....
T Consensus        88 L~~eDtAvYYCA~~~  102 (120)
T d1dlfh_          88 LRAEDTGIYYCTGIY  102 (120)
T ss_dssp             CCGGGCEEEEEEEEB
T ss_pred             ccCCCceEEEeeEec
Confidence            999999999997543

>d1c5cl2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain kappa constant domain, CL-kappa
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.08  E-value=5.4e-06  Score=49.83  Aligned_cols=77  Identities=16%  Similarity=0.138  Sum_probs=49.0

Q ss_pred             CCeEEEEEEEeeCC-C-CeEEEEECCEecccCCcceEE--EcCCC-CceeeEEEEccCCCCCceeEEEEEEcCCCcceEE
Q psy7036         127 GKRLLFECRIQADP-A-PTVIWSHSGVQVKEDKRHKFS--IDKDG-HSYFASLEIIDVTIEDAGKYKVTAKNELGESNAT  201 (254)
Q Consensus       127 g~~~~l~C~~~~~~-~-~~~~W~~~~~~~~~~~~~~~~--~~~~~-~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~  201 (254)
                      +..+.|.|.+.++. . ..+.|.+||..+.........  ...++ +...+.|.|..-.......|+|.+.+........
T Consensus        20 ~~~~~L~Clv~~f~P~~i~v~W~~ng~~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~W~~~~~ytC~V~H~~~~~pv~   99 (107)
T d1c5cl2          20 SGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVT   99 (107)
T ss_dssp             TTEEEEEEEEEEEBSSCCEEEEEETTEECCSSEEEEECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCSSCEE
T ss_pred             CCceEEEEEEEEeeCCCCEEEEEECCEECCCCEEEecccccCCCCcEEEEEEEEECHHHhCCCCEEEEEEEECCCCCceE
Confidence            56789999998864 3 479999999877544221111  11222 3455778887655445558999999876554443


Q ss_pred             EE
Q psy7036         202 IS  203 (254)
Q Consensus       202 ~~  203 (254)
                      ..
T Consensus       100 ks  101 (107)
T d1c5cl2         100 KS  101 (107)
T ss_dssp             EE
T ss_pred             EE
Confidence            33

>d2nxyd1 b.1.1.1 (D:3001-3128) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=98.08  E-value=2.4e-05  Score=47.56  Aligned_cols=72  Identities=15%  Similarity=0.256  Sum_probs=45.4

Q ss_pred             ceeecCCCeEEEEEEEeeCC--CCceEEEeC--CE---E---e---------eeCCcceEEEeecCCcceEEEEEEeccC
Q psy7036          17 LRQEDEGNRLIFECQLLCNP--KPDIVWFRG--ET---Q---L---------SEDTRTVMKTTPIGTNKYLVALELDDVI   77 (254)
Q Consensus        17 ~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~--~~---~---~---------~~~~~~~~~~~~~~~~~~~~~l~i~~~~   77 (254)
                      ...+.+|++++|+|.+.|..  ...+.|+|.  |+   -   +         ...-+.++....+.. .....|.+.+++
T Consensus         9 ~~~~kpg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewig~i~~~~~~~~ya~s~kgR~tiS~D~s-~~t~yL~~~sL~   87 (128)
T d2nxyd1           9 AEVKKPGSSVKVSCKASGDTFIRYSFTWVRQAPGQGLEWMGRIITILDVAHYAPHLQGRVTITADKS-TSTVYLELRNLR   87 (128)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGEEEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETT-TTEEEEEECSCC
T ss_pred             CceECCCCCEEEEEEEcCCCccCCCcccceeCCCcceeeeeecCCcccccccccceeEEEEEeecCC-CceEEeeeeecc
Confidence            45689999999999998854  335678762  11   0   1         111122233222222 223369999999


Q ss_pred             CCCCeEEEEEEE
Q psy7036          78 ETDAGLYKVKAK   89 (254)
Q Consensus        78 ~~d~G~Y~C~~~   89 (254)
                      .+|.+.|.|...
T Consensus        88 ~eDTA~YYCAr~   99 (128)
T d2nxyd1          88 SDDTAVYFCAGV   99 (128)
T ss_dssp             GGGCEEEEEEEE
T ss_pred             ccCceEEEEeEE
Confidence            999999999765

>d1dfbh1 b.1.1.1 (H:1-126) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 3 [TaxId: 9606]

Probab=98.08  E-value=3e-05  Score=47.00  Aligned_cols=72  Identities=15%  Similarity=0.217  Sum_probs=45.4

Q ss_pred             ceeecCCCeEEEEEEEeeCC--CCceEEEeC--CEE------ee---------eCCcceEEEeecCCcceEEEEEEeccC
Q psy7036          17 LRQEDEGNRLIFECQLLCNP--KPDIVWFRG--ETQ------LS---------EDTRTVMKTTPIGTNKYLVALELDDVI   77 (254)
Q Consensus        17 ~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~--~~~------~~---------~~~~~~~~~~~~~~~~~~~~l~i~~~~   77 (254)
                      ...+.+|++++|+|.+.|..  ...+.|+|.  |+.      +.         ..-+.++....+.. .-...|.|.+++
T Consensus         9 ~~~vkPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgR~tiS~D~s-~nt~~L~~~~L~   87 (126)
T d1dfbh1           9 GGLVQPGRSLRLSCAASGFTFNDYAMHWVRQAPGKGLEWVSGISWDSSSIGYADSVKGRFTISRDNA-KNSLYLQMNSLR   87 (126)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSSEEECGGGTTTEEEEEETT-TTEEEEEECSCC
T ss_pred             CceECCCCCeEEEEEECCccccCCcceeceeCCCccceeeeecCcccccchhccccccceEEeccCC-CcEEEeeeeeec
Confidence            34688999999999998743  446788872  211      11         11112222222221 223369999999


Q ss_pred             CCCCeEEEEEEE
Q psy7036          78 ETDAGLYKVKAK   89 (254)
Q Consensus        78 ~~d~G~Y~C~~~   89 (254)
                      .+|++.|.|...
T Consensus        88 ~eDtavYYCAr~   99 (126)
T d1dfbh1          88 AEDMALYYCVKG   99 (126)
T ss_dssp             GGGCEEEEEEEE
T ss_pred             cCcceEEEEEec
Confidence            999999999654

>d1mfah1 b.1.1.1 (H:251-367) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.08  E-value=8.2e-06  Score=48.92  Aligned_cols=72  Identities=18%  Similarity=0.218  Sum_probs=45.0

Q ss_pred             CeeeecCCCeEEEEEEEeeCCC--CeEEEEEC--CEec------c---------cCCcceEEEcCCCCceeeEEEEccCC
Q psy7036         120 SIRQEDDGKRLLFECRIQADPA--PTVIWSHS--GVQV------K---------EDKRHKFSIDKDGHSYFASLEIIDVT  180 (254)
Q Consensus       120 ~~~~~~~g~~~~l~C~~~~~~~--~~~~W~~~--~~~~------~---------~~~~~~~~~~~~~~~~~~~l~i~~~~  180 (254)
                      ....+.+|++++|.|.+.|+..  -.+.|+|.  |+.+      .         .....++....+.......|.|.+++
T Consensus         8 g~~~~kPG~sl~LsC~~SG~s~s~~~~~WvRQ~PGkglEwl~~i~~~~~~~~ya~~~~~R~t~s~D~s~~~~~L~i~~L~   87 (117)
T d1mfah1           8 GTVVARPGASVKMSCKASGYTFTNYWMHWIKQRPGQGLEWIGAIYPGNSATFYNHKFRAKTKLTAVTSTTTAYMELSSLT   87 (117)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSEEEEEEEETTTEEEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCceECCCCCEEEEEEEcccCCCCCceEeeeeCCCCcceeeEccCcccccccccccceeeEEEEcccCccEeEeeecccC
Confidence            3456778999999999987643  24778763  2111      1         11111233332222223479999999


Q ss_pred             CCCceeEEEEE
Q psy7036         181 IEDAGKYKVTA  191 (254)
Q Consensus       181 ~~d~G~y~C~~  191 (254)
                      .+|.+.|.|.-
T Consensus        88 ~eDtAvYYCAr   98 (117)
T d1mfah1          88 SEDSAVYYCTR   98 (117)
T ss_dssp             GGGCEEEEEEE
T ss_pred             CCcceEEEEec
Confidence            99999999964

>d2ntsp1 b.1.1.1 (P:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.08  E-value=1.9e-05  Score=47.89  Aligned_cols=73  Identities=12%  Similarity=0.284  Sum_probs=45.6

Q ss_pred             CCeeeecCCCeEEEEEEEeeCCCCeEEEEEC--CEecc-------------cCCcceE-EEcCCCCceeeEEEEccCCCC
Q psy7036         119 PSIRQEDDGKRLLFECRIQADPAPTVIWSHS--GVQVK-------------EDKRHKF-SIDKDGHSYFASLEIIDVTIE  182 (254)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~--~~~~~-------------~~~~~~~-~~~~~~~~~~~~l~i~~~~~~  182 (254)
                      +..+.+.+|+.++|.|..... ...+.|||.  ++...             .....++ ....+.  ....|.|.++..+
T Consensus         6 P~~~~~~~G~svtl~C~~~~~-~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~L~I~~~~~~   82 (113)
T d2ntsp1           6 PRYLIKTRGQQVTLSCSPISG-HRSVSWYQQTPGQGLQFLFEYFNETQRNKGNFPGRFSGRQFSN--SRSEMNVSTLELG   82 (113)
T ss_dssp             CSEEEEETTCCEEEEEECSTT-CCEEEEEEEETTTEEEEEEEEETTEEEEECSCCTTEEEEECTT--SCEEEEECSCCGG
T ss_pred             CCeEEECCCCCEEEEEEECCC-CCEEEEEEeecccceEeeeeecccccccccccccceeeccCcC--CeeEEEECCCCcc
Confidence            445677899999999985443 346899982  21110             0111111 111111  1247999999999


Q ss_pred             CceeEEEEEEcC
Q psy7036         183 DAGKYKVTAKNE  194 (254)
Q Consensus       183 d~G~y~C~~~~~  194 (254)
                      |+|.|.|.+...
T Consensus        83 Dsa~YyCA~~~~   94 (113)
T d2ntsp1          83 DSALYLCASSLA   94 (113)
T ss_dssp             GCEEEEEEEESS
T ss_pred             cceeeeeeeeCC
Confidence            999999988753

>d1lmka1 b.1.1.1 (A:2-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.08  E-value=1.9e-05  Score=47.88  Aligned_cols=75  Identities=12%  Similarity=0.174  Sum_probs=46.7

Q ss_pred             CCCceeecCCCeEEEEEEEeeCC--CCceEEEeC--CEE------ee---------eCCcceEEEeecCCcceEEEEEEe
Q psy7036          14 KPQLRQEDEGNRLIFECQLLCNP--KPDIVWFRG--ETQ------LS---------EDTRTVMKTTPIGTNKYLVALELD   74 (254)
Q Consensus        14 ~~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~--~~~------~~---------~~~~~~~~~~~~~~~~~~~~l~i~   74 (254)
                      ++....+.+|+++.|+|.+.|..  ...+.|+|.  |+-      +.         ..-+.++....+. ..-...|.+.
T Consensus         5 esG~~~~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgRfTiS~D~-s~nt~yL~m~   83 (126)
T d1lmka1           5 QSGTELMKPGRSLKISCKTTGYIFSNYWIEWVKQRPGHGLEWIGKILPGGGSNTYNDKFKGKATFTADT-SSNIAYMQLS   83 (126)
T ss_dssp             ECCCEEECTTCCEEEEEEEESSCTTTEEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEET-TTTEEEEEEC
T ss_pred             eECCceECCCCCeEEEEEEccCCCCCCCCcceeeCCCccceeeeecCccccchhhhhhhccceEEEecC-CccEEEeeec
Confidence            34455789999999999998853  445788872  211      11         1111222222211 1223379999


Q ss_pred             ccCCCCCeEEEEEEE
Q psy7036          75 DVIETDAGLYKVKAK   89 (254)
Q Consensus        75 ~~~~~d~G~Y~C~~~   89 (254)
                      +++.+|.+.|.|...
T Consensus        84 ~L~~eDTAvYYCAr~   98 (126)
T d1lmka1          84 SLTSEDSAVYYCARG   98 (126)
T ss_dssp             SCCGGGCEEEEEEEE
T ss_pred             ccCCCcceEEEEeec
Confidence            999999999999643

>d2esve1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.08  E-value=1.4e-05  Score=48.37  Aligned_cols=73  Identities=18%  Similarity=0.442  Sum_probs=45.6

Q ss_pred             CCeeeecCCCeEEEEEEEeeCCCCeEEEEEC--CEe---c-----------ccCCcceEEEcCCCCceeeEEEEccCCCC
Q psy7036         119 PSIRQEDDGKRLLFECRIQADPAPTVIWSHS--GVQ---V-----------KEDKRHKFSIDKDGHSYFASLEIIDVTIE  182 (254)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~--~~~---~-----------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~  182 (254)
                      |..+.+.+|++++|.|..... ...+.|||.  ++.   +           ......++.....+. ..+.|.|.++..+
T Consensus         6 P~~~~~~~G~svtl~C~~~~~-~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~-~~~~L~i~~~~~~   83 (111)
T d2esve1           6 PSHSVIEKGQTVTLRCDPISG-HDNLYWYRRVMGKEIKFLLHFVKESKQDESGMPNNRFLAERTGG-TYSTLKVQPAELE   83 (111)
T ss_dssp             CSEEEEETTCCEEEEEECCTT-CSEEEEEEEETTSCEEEEEEEETTEEEECTTCCSTTEEEECTTS-SSEEEEESSCCGG
T ss_pred             CCEEEECCCCCEEEEEEECCC-CceEEEEEEccCCcceecceecccCcccccCCCCccEEEEcCCC-CEEEEEECCcccC
Confidence            455678899999999985433 347899973  111   0           011111222222111 1247999999999


Q ss_pred             CceeEEEEEEc
Q psy7036         183 DAGKYKVTAKN  193 (254)
Q Consensus       183 d~G~y~C~~~~  193 (254)
                      |+|.|.|.+..
T Consensus        84 Dsa~YyCa~~~   94 (111)
T d2esve1          84 DSGVYFCASSQ   94 (111)
T ss_dssp             GCEEEEEEEES
T ss_pred             CCceEEEeeeC
Confidence            99999998654

>d1igtb3 b.1.1.2 (B:236-361) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Mouse (Mus musculus), gamma2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Mouse (Mus musculus), gamma2 [TaxId: 10090]

Probab=98.07  E-value=1.4e-05  Score=48.89  Aligned_cols=77  Identities=12%  Similarity=0.124  Sum_probs=49.7

Q ss_pred             cCCCeEEEEEEEeeC-C---CCeEEEEECCEecccCCcceEEEcCCC-CceeeEEEEccCCCCCceeEEEEEEcCCCcce
Q psy7036         125 DDGKRLLFECRIQAD-P---APTVIWSHSGVQVKEDKRHKFSIDKDG-HSYFASLEIIDVTIEDAGKYKVTAKNELGESN  199 (254)
Q Consensus       125 ~~g~~~~l~C~~~~~-~---~~~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~  199 (254)
                      ..+..+.|.|.+.++ |   ...+.|++++..+............++ +...+.|.|..-.......|+|.|.+......
T Consensus        30 ~~~~~~~L~C~v~gf~P~~~~v~v~W~~~g~~~~~~~~~~~~~~~~gt~s~~S~L~v~~~eW~~g~~ytC~V~H~~l~~p  109 (119)
T d1igtb3          30 MISLSPIVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTLRVVSALPIQHQDWMSGKEFKCKVNNKDLPAP  109 (119)
T ss_dssp             CTTSCCEEEEEEEEECTTCCCCEEEEEETTEECSSTTCBCCEEECSSSEEEEEEEECCHHHHHTTCEEEEEEECTTCSSC
T ss_pred             ccCCceEEEEEeecccCCCCcEEEEEeeCCcccCCCEECccEECCCCcEEEEEEEEEeHHHhCCCCeEEEEEEECCCCCC
Confidence            357788999999885 3   246899999988764433333333333 34456676665544455689999998765443


Q ss_pred             EE
Q psy7036         200 AT  201 (254)
Q Consensus       200 ~~  201 (254)
                      ..
T Consensus       110 v~  111 (119)
T d1igtb3         110 IE  111 (119)
T ss_dssp             EE
T ss_pred             eE
Confidence            33

>d1nfde2 b.1.1.2 (E:108-215) Immunoglobulin light chain lambda constant domain, CL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=98.07  E-value=5e-07  Score=54.20  Aligned_cols=72  Identities=10%  Similarity=0.141  Sum_probs=46.5

Q ss_pred             CCeEEEEEEEeeCCC--CeEEEEECCEecccCCcceEEEcCCC-CceeeEEEEccCCCCCceeEEEEEEcCCCcc
Q psy7036         127 GKRLLFECRIQADPA--PTVIWSHSGVQVKEDKRHKFSIDKDG-HSYFASLEIIDVTIEDAGKYKVTAKNELGES  198 (254)
Q Consensus       127 g~~~~l~C~~~~~~~--~~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~  198 (254)
                      +..+.|.|.+.++.+  ..+.|.++|..+............++ +...+.|.|..-...+...|+|.+.+.....
T Consensus        20 ~~~~~l~C~~~gf~P~~i~v~W~~~g~~~~~~~~~~~~~~~~~tys~~S~l~v~~~~w~~~~~ytC~V~H~~~~~   94 (104)
T d1nfde2          20 TNKATLVCLVNDFYPGSATVTWKANGATINDGVKTTKPSKQGQNYMTSSYLSLTADQWKSHNRVSCQVTHEGETV   94 (104)
T ss_dssp             TTEECCCEEEEEEBSSCCEEEEEETTEEECSSCBCCCCBCSSSCEEEEEBCCEEHHHHHTCSCEEEEEECTTTTC
T ss_pred             CCcEEEEEEEEEeeCCCCEEEEEECCEECCCCEEeccccCCCceEEEEEEEEEcHHHcCCCCEEEEEEEECCCcE
Confidence            566899999998543  37999999998764432222222222 2334566666555555668999999876543

>d1kgce1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.07  E-value=1.3e-05  Score=48.59  Aligned_cols=73  Identities=14%  Similarity=0.295  Sum_probs=45.1

Q ss_pred             CCeeeecCCCeEEEEEEEeeCCCCeEEEEECC--Ee---c-----------ccCCcceEEEcCCCCceeeEEEEccCCCC
Q psy7036         119 PSIRQEDDGKRLLFECRIQADPAPTVIWSHSG--VQ---V-----------KEDKRHKFSIDKDGHSYFASLEIIDVTIE  182 (254)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~--~~---~-----------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~  182 (254)
                      +..+.+.+|+.++|.|.... ....+.||+..  +.   +           ......++...... ...+.|.|.+++.+
T Consensus         6 P~~~~~~~G~svtl~C~~~~-~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~L~I~~~~~~   83 (112)
T d1kgce1           6 PRYKVAKRGQDVALRCDPIS-GHVSLFWYQQALGQGPEFLTYFQNEAQLDKSGLPSDRFFAERPE-GSVSTLKIQRTQQE   83 (112)
T ss_dssp             CSEEEEETTCCEEEEEECCT-TCCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEECTT-SSCEEEEESSCCGG
T ss_pred             CCeEEECCCCCEEEEEEECC-CCCEEEeeeeecccceEEeeeeccCcccccCCCCCCceeeECCc-CCEEEEEECCCCcC
Confidence            44566789999999998543 34568999831  10   0           00111112121111 11247999999999


Q ss_pred             CceeEEEEEEc
Q psy7036         183 DAGKYKVTAKN  193 (254)
Q Consensus       183 d~G~y~C~~~~  193 (254)
                      |+|.|.|.+..
T Consensus        84 Dsa~YyCa~~~   94 (112)
T d1kgce1          84 DSAVYLCASSL   94 (112)
T ss_dssp             GCEEEEEEEES
T ss_pred             CCEEEEEeeeC
Confidence            99999998764

>d1ow0a2 b.1.1.2 (A:343-450) Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.06  E-value=2.4e-06  Score=51.54  Aligned_cols=73  Identities=8%  Similarity=0.078  Sum_probs=47.0

Q ss_pred             ecCCCeEEEEEEEeeCC-CC-eEEEEECCEecccCCcce--EEE---cCC-CCceeeEEEEccCCCCCceeEEEEEEcCC
Q psy7036         124 EDDGKRLLFECRIQADP-AP-TVIWSHSGVQVKEDKRHK--FSI---DKD-GHSYFASLEIIDVTIEDAGKYKVTAKNEL  195 (254)
Q Consensus       124 ~~~g~~~~l~C~~~~~~-~~-~~~W~~~~~~~~~~~~~~--~~~---~~~-~~~~~~~l~i~~~~~~d~G~y~C~~~~~~  195 (254)
                      +..++.++|.|.+.++. .. .+.|+++|+.+.......  ...   ..+ .+...+.|.|..-.......|+|.+.+..
T Consensus        17 ~~~~~~~tl~C~~~~f~P~~i~v~W~~~g~~~~~~~~~t~~~~~~~~~~~gtys~~S~L~v~~~~w~~g~~ytC~V~H~s   96 (108)
T d1ow0a2          17 LALNELVTLTCLARGFSPKDVLVRWLQGSQELPREKYLTWASRQEPSQGTTTFAVTSILRVAAEDWKKGDTFSCMVGHEA   96 (108)
T ss_dssp             TTSSSEEEEEEEEEEESSSCCEEEEEETTEECCGGGSEECCCEECSCSSSCCEEEEEEEEEEHHHHHHTCCEEEEEECTT
T ss_pred             hccCCceEEEEEEEEeECCCEEEEEEECCeEcCCCceEcccceecccCCCCcEEEEEEEEEcHHHhCCCCEEEEEEEeCC
Confidence            44578899999998864 33 799999999876432211  111   112 22345667776555445569999999865


Q ss_pred             C
Q psy7036         196 G  196 (254)
Q Consensus       196 ~  196 (254)
                      .
T Consensus        97 l   97 (108)
T d1ow0a2          97 L   97 (108)
T ss_dssp             C
T ss_pred             C
Confidence            4

>d1ieha_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=98.06  E-value=2.5e-05  Score=47.64  Aligned_cols=72  Identities=17%  Similarity=0.296  Sum_probs=46.9

Q ss_pred             eeecCCCeEEEEEEEeeCCC--CeEEEEEC--CEe------cc---------cCCcceEEEcCCCCceeeEEEEccCCCC
Q psy7036         122 RQEDDGKRLLFECRIQADPA--PTVIWSHS--GVQ------VK---------EDKRHKFSIDKDGHSYFASLEIIDVTIE  182 (254)
Q Consensus       122 ~~~~~g~~~~l~C~~~~~~~--~~~~W~~~--~~~------~~---------~~~~~~~~~~~~~~~~~~~l~i~~~~~~  182 (254)
                      ..+.+|+.+.|.|.+.|+..  -.+.|+|.  |+.      +.         ..-..++....+.......|.|.+++.+
T Consensus        10 ~lvkPG~Sl~LsC~~SG~s~~~y~~~WvRQ~PGkgLEWlg~I~~~~~~~~Ya~s~kgRfTiSrD~s~~t~yL~i~~L~~e   89 (135)
T d1ieha_          10 GLVQPGGSLRVSCAASGFTFSSYHMAWVRQAPGKGLEWVSTINPGDGSTYYADSVKGRFTISRDNAKNTLYLQMNSLKSE   89 (135)
T ss_dssp             CEECTTCEEEEEEEEESSCTTTSCEEEEEECSSCCCEEEEEECSSSCCEEECSTTTTTEEEEECTTTCCEEEEEESCCSS
T ss_pred             ceECCCCCeEEEEEEcCCCCcCCceeccccCCCCceeeeeccCCccccccccccceEeEEEeccCCCceeEecEeeeCcc
Confidence            45678999999999988643  24788863  111      11         1111234444443333457999999999


Q ss_pred             CceeEEEEEEc
Q psy7036         183 DAGKYKVTAKN  193 (254)
Q Consensus       183 d~G~y~C~~~~  193 (254)
                      |.+.|.|....
T Consensus        90 DTAvYYCAr~~  100 (135)
T d1ieha_          90 DTAVYYCAKYS  100 (135)
T ss_dssp             SCEEEEEEEBS
T ss_pred             cceeeEEEEec
Confidence            99999997543

>d1a2yb_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 5 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 5 [TaxId: 10090]

Probab=98.06  E-value=1.6e-05  Score=47.47  Aligned_cols=72  Identities=15%  Similarity=0.257  Sum_probs=46.3

Q ss_pred             eeecCCCeEEEEEEEeeCCCC--eEEEEECC--Ee------cc--------cCCcceEEEcCCCCceeeEEEEccCCCCC
Q psy7036         122 RQEDDGKRLLFECRIQADPAP--TVIWSHSG--VQ------VK--------EDKRHKFSIDKDGHSYFASLEIIDVTIED  183 (254)
Q Consensus       122 ~~~~~g~~~~l~C~~~~~~~~--~~~W~~~~--~~------~~--------~~~~~~~~~~~~~~~~~~~l~i~~~~~~d  183 (254)
                      ..+.+|+.+.|.|.+.|+...  .+.|+|..  +.      +.        ..-..++....+.......|.|.+++.+|
T Consensus        10 ~~vkPg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewlg~i~~~~~~~y~~s~kgR~tis~D~s~n~~~L~~~~l~~eD   89 (116)
T d1a2yb_          10 GLVAPSQSLSITCTVSGFSLTGYGVNWVRQPPGKGLEWLGMIWGDGNTDYNSALKSRLSISKDNSKSQVFLKMNSLHTDD   89 (116)
T ss_dssp             SEECTTSCEEEEEEEESSCTTSSEEEEEEECTTSCCEEEEEECTTSCEEECTTTGGGEEEEEEGGGTEEEEEECSCCGGG
T ss_pred             ceECCCCCeEEEEEEcccccCCCCCccceECCCcceeeeeecCccccceecccccccceEeccCCCceEEcceeeeeecc
Confidence            456789999999999986533  47788741  11      11        11112333333333333479999999999


Q ss_pred             ceeEEEEEEc
Q psy7036         184 AGKYKVTAKN  193 (254)
Q Consensus       184 ~G~y~C~~~~  193 (254)
                      .+.|.|.-..
T Consensus        90 TAvYYCAr~~   99 (116)
T d1a2yb_          90 TARYYCARER   99 (116)
T ss_dssp             CEEEEEEEES
T ss_pred             ceEEEEEEeC
Confidence            9999997543

>d1indh1 b.1.1.1 (H:1-114) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=98.06  E-value=1.3e-05  Score=47.68  Aligned_cols=70  Identities=17%  Similarity=0.287  Sum_probs=45.1

Q ss_pred             eeecCCCeEEEEEEEeeCCC--CeEEEEECC--Ee------ccc---------CCcceEEEcCCCCceeeEEEEccCCCC
Q psy7036         122 RQEDDGKRLLFECRIQADPA--PTVIWSHSG--VQ------VKE---------DKRHKFSIDKDGHSYFASLEIIDVTIE  182 (254)
Q Consensus       122 ~~~~~g~~~~l~C~~~~~~~--~~~~W~~~~--~~------~~~---------~~~~~~~~~~~~~~~~~~l~i~~~~~~  182 (254)
                      ..+.+|+.++|.|.+.|+..  -.+.|+|..  +.      +..         .-..++.+..+.......|.|.+++.+
T Consensus        10 ~~vkpG~sl~LsC~~SG~~~s~~~~~WvRQ~PGkglEwv~~i~~~~~~~~y~~s~kgRftiSrD~s~nt~~L~~~~L~~e   89 (114)
T d1indh1          10 DSVKPGGSLKLSCAASGFTLSGETMSWVRQTPEKRLEWVATTLSGGGFTFYSASVKGRFTISRDNAQNNLYLQLNSLRSE   89 (114)
T ss_dssp             CEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECSTTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             ceECCCCCEEEEEEECccCccCCceeccccCCCCccEEeeecccccchhhhhhhheeeEEEeccCccceeeeeeeeeccC
Confidence            45778999999999988643  247788732  11      111         111233333333233346999999999


Q ss_pred             CceeEEEEE
Q psy7036         183 DAGKYKVTA  191 (254)
Q Consensus       183 d~G~y~C~~  191 (254)
                      |.+.|.|..
T Consensus        90 DtAvYYCA~   98 (114)
T d1indh1          90 DTALYFCAS   98 (114)
T ss_dssp             GCEEEEEEC
T ss_pred             cccEEEECC
Confidence            999999964

>d1lo4h1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]

Probab=98.05  E-value=3.9e-05  Score=45.91  Aligned_cols=70  Identities=14%  Similarity=0.296  Sum_probs=45.5

Q ss_pred             eeecCCCeEEEEEEEeeCC--CCceEEEeC--CEE------eee--------C--CcceEEEeecCCcceEEEEEEeccC
Q psy7036          18 RQEDEGNRLIFECQLLCNP--KPDIVWFRG--ETQ------LSE--------D--TRTVMKTTPIGTNKYLVALELDDVI   77 (254)
Q Consensus        18 ~~v~~g~~v~l~C~~~~~~--~~~v~W~~~--~~~------~~~--------~--~~~~~~~~~~~~~~~~~~l~i~~~~   77 (254)
                      ..+.+|++++|+|.+.|..  ...+.|+|.  |+.      +..        .  .++.+....   ..-...|.|.+++
T Consensus        10 ~~vkPG~Sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwl~~i~~~g~t~y~~s~kgR~tiSrD~---s~nt~~L~i~~l~   86 (118)
T d1lo4h1          10 DLVKPGGSLTLSCEASGFTLRTYGMSWVRQTPQMRLEWVASISYGGLLYFSDSVKGRFTISRDI---VRNILTLQMSRLR   86 (118)
T ss_dssp             CEECTTCCEEEEEEEESSCTTTSEEEEEEECTTCCEEEEEEECTTCCEEECTTTBTTBEEEEET---TTTEEEEEECSCC
T ss_pred             ceECCCCCeEEEEEECCCcccCCCcccccCCCCcceeeeeecccccchhhccccceeEEEeccc---cceeeeecccccc
Confidence            4688999999999998853  456889873  211      111        1  122222221   1223369999999


Q ss_pred             CCCCeEEEEEEEc
Q psy7036          78 ETDAGLYKVKAKN   90 (254)
Q Consensus        78 ~~d~G~Y~C~~~~   90 (254)
                      .+|.+.|.|....
T Consensus        87 ~eDtA~YyCAr~~   99 (118)
T d1lo4h1          87 SEDTAIYYCARGT   99 (118)
T ss_dssp             GGGCEEEEEEEEE
T ss_pred             CCcceEEEecccC
Confidence            9999999997553

>d1sjva_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=98.05  E-value=8.7e-06  Score=47.96  Aligned_cols=69  Identities=19%  Similarity=0.323  Sum_probs=43.1

Q ss_pred             eecCCCeEEEEEEEeeCC--CCeEEEEECC--Ee------c--------ccCCcceEEEcCCCCceeeEEEEccCCCCCc
Q psy7036         123 QEDDGKRLLFECRIQADP--APTVIWSHSG--VQ------V--------KEDKRHKFSIDKDGHSYFASLEIIDVTIEDA  184 (254)
Q Consensus       123 ~~~~g~~~~l~C~~~~~~--~~~~~W~~~~--~~------~--------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~  184 (254)
                      .+.+|++++|.|.+.|+.  .-.+.|++..  +.      +        ...-..++....+.......|.|.+++.+|+
T Consensus         4 lvkPG~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewi~~i~~~g~t~y~~~~kgR~tiSrd~s~n~~~L~i~~l~~eDt   83 (107)
T d1sjva_           4 LVQAGESLKLSCAASGNTFSGGFMGWYRQAPGKQRELVATINSRGITNYADFVKGRFTISRDNAKKTVYLEMNSLEPEDT   83 (107)
T ss_dssp             CCCTTCCEEEEECCCC-----CCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTCEEEEECTTTCCEEEEECSCCGGGC
T ss_pred             EecCCCCcEEEEEECCCCccCCcEEEEEeCCccceeeeeeeeeccccccccccccceEEecCCceeEEEEeecCCCcccc
Confidence            356799999999988753  2347788742  11      1        1111223444433333335799999999999


Q ss_pred             eeEEEEE
Q psy7036         185 GKYKVTA  191 (254)
Q Consensus       185 G~y~C~~  191 (254)
                      +.|.|..
T Consensus        84 AvYyCA~   90 (107)
T d1sjva_          84 AVYYCYT   90 (107)
T ss_dssp             SEEEEEE
T ss_pred             eeeeEec
Confidence            9999964

>d1ct8b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]

Probab=98.05  E-value=1.5e-05  Score=47.80  Aligned_cols=72  Identities=17%  Similarity=0.229  Sum_probs=45.1

Q ss_pred             eeeecCCCeEEEEEEEeeCCC--CeEEEEEC--CEe------cc---------cCCcceEEEcCCCCceeeEEEEccCCC
Q psy7036         121 IRQEDDGKRLLFECRIQADPA--PTVIWSHS--GVQ------VK---------EDKRHKFSIDKDGHSYFASLEIIDVTI  181 (254)
Q Consensus       121 ~~~~~~g~~~~l~C~~~~~~~--~~~~W~~~--~~~------~~---------~~~~~~~~~~~~~~~~~~~l~i~~~~~  181 (254)
                      ...+.+|+.+.|.|.+.|+..  -.+.|+|.  |+.      +.         .....++....+.......|.|.+++.
T Consensus         9 ~~~~kPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkgLEwlg~i~~~~~~~~y~~~~~gR~tis~D~s~~t~yL~i~~L~~   88 (118)
T d1ct8b1           9 AVLVKPGASVKLSCKTSGFTFSSSYINWLKQKPGQSLEWIAWIYAGSGGTVYNQHFTDKARLTVDTSSSTAYMQFSSLTT   88 (118)
T ss_dssp             CEEECTTCCEEEEEEEESSCSTTCEEEEEEECTTSCEEEEEEEETTTCCEEECTTSTTTEEEEEEGGGTEEEEEECSCCG
T ss_pred             CceECCCCCEEEEEEEccccCCCCCCcccEECCCCceEeeeeccccccchhhhhheeeeEEEEecCccceEEecccccCC
Confidence            456778999999999988643  24777763  111      11         111112222222222334799999999


Q ss_pred             CCceeEEEEEE
Q psy7036         182 EDAGKYKVTAK  192 (254)
Q Consensus       182 ~d~G~y~C~~~  192 (254)
                      +|.+.|.|...
T Consensus        89 eDtAvYYCAr~   99 (118)
T d1ct8b1          89 EDSAIYYCARY   99 (118)
T ss_dssp             GGCEEEEEEEE
T ss_pred             CcceEEEEeee
Confidence            99999999654

>d1op3h1 b.1.1.1 (H:1-115) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=98.05  E-value=3e-05  Score=46.94  Aligned_cols=71  Identities=17%  Similarity=0.272  Sum_probs=45.3

Q ss_pred             eeecCCCeEEEEEEEeeCC--CCceEEEeC--CEE------eee---------CCcceEEEeecCCcceEEEEEEeccCC
Q psy7036          18 RQEDEGNRLIFECQLLCNP--KPDIVWFRG--ETQ------LSE---------DTRTVMKTTPIGTNKYLVALELDDVIE   78 (254)
Q Consensus        18 ~~v~~g~~v~l~C~~~~~~--~~~v~W~~~--~~~------~~~---------~~~~~~~~~~~~~~~~~~~l~i~~~~~   78 (254)
                      ..+.+|++++|+|.+.|..  ...+.|+|.  |+.      +..         .-+.++....+.. .....|+|.+++.
T Consensus        10 ~lvkpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwv~~i~~~~~~~~Y~~s~kgRftiSrD~s-~~t~~Lqm~sL~~   88 (125)
T d1op3h1          10 GLVKAGGSLILSCGVSNFRISAHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRDDL-EDFVYLQMHKMRV   88 (125)
T ss_dssp             EEEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEEEETT-TTEEEEEECSCCG
T ss_pred             ceECCCCCeEEEEeECCccCcCcccCccccCCCcceeeeeecCccccccccccccccceEEeccCc-cceEeeeeeccCC
Confidence            4688999999999998743  446889872  211      111         1111222222211 2234799999999


Q ss_pred             CCCeEEEEEEE
Q psy7036          79 TDAGLYKVKAK   89 (254)
Q Consensus        79 ~d~G~Y~C~~~   89 (254)
                      +|.+.|.|...
T Consensus        89 eDTAvYYCAr~   99 (125)
T d1op3h1          89 EDTAIYYCARK   99 (125)
T ss_dssp             GGCEEEEEEEE
T ss_pred             ccceeEeEeec
Confidence            99999999754

>d1uvqb1 b.1.1.2 (B:95-191) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=98.04  E-value=1.9e-05  Score=46.29  Aligned_cols=72  Identities=15%  Similarity=0.153  Sum_probs=42.4

Q ss_pred             CCeEEEEEEEeeCCC--CeEEEEECCEecccCCc-ceEEEcCCC-CceeeEEEEccCCCCCceeEEEEEEcCCCcceEE
Q psy7036         127 GKRLLFECRIQADPA--PTVIWSHSGVQVKEDKR-HKFSIDKDG-HSYFASLEIIDVTIEDAGKYKVTAKNELGESNAT  201 (254)
Q Consensus       127 g~~~~l~C~~~~~~~--~~~~W~~~~~~~~~~~~-~~~~~~~~~-~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~  201 (254)
                      ++..+|.|.+.++.+  ..+.|.+||..+..... .......++ +...+.|.+   ..++...|+|.+.+........
T Consensus        16 ~~~~tL~C~~~gF~P~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~s~l~v---~~~~~~~ytC~V~H~sl~~p~~   91 (97)
T d1uvqb1          16 NHHNLLVCSVTDFYPGQIKVRWFRNDQEETAGVVSTPLIRNGDWTFQILVMLEM---TPQRGDVYTCHVEHPSLQSPIT   91 (97)
T ss_dssp             ---CEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEECSSSCEEEEEEEEC---CSCTTCCEEEEEECTTCSSCEE
T ss_pred             CCCEEEEEEEeeeECCCeEEEEEECCEEcCCCcEeceeecCCCceEEEEEEecc---CCCCCCEEEEEEEeCCCCCCcc
Confidence            556789999998654  46999999987654321 112222333 222334443   4556668999999876554433

>d1rzga1 b.1.1.1 (A:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=98.04  E-value=1.8e-05  Score=48.29  Aligned_cols=75  Identities=12%  Similarity=0.183  Sum_probs=46.7

Q ss_pred             CCCceeecCCCeEEEEEEEeeCC--CCceEEEeC--CEE------eeeC---------CcceEEEeecCCcceEEEEEEe
Q psy7036          14 KPQLRQEDEGNRLIFECQLLCNP--KPDIVWFRG--ETQ------LSED---------TRTVMKTTPIGTNKYLVALELD   74 (254)
Q Consensus        14 ~~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~--~~~------~~~~---------~~~~~~~~~~~~~~~~~~l~i~   74 (254)
                      ++....+.+|++++|+|.+.|..  ...+.|+|.  |+-      +...         -+.++....+.. .....|.+.
T Consensus         6 esg~~~~kPg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglewv~~i~~~~~~~~y~~s~kgR~tiS~D~s-~~t~yL~~~   84 (130)
T d1rzga1           6 QSGAEVKKPGSSVKVSCKASGGTFSNYAINWVRQAPGQGLEWMGGIIPIFNIAHYAQRFQGRVSITADES-TSTAYMELS   84 (130)
T ss_dssp             ECCCEEECTTCCEEEEEECCSSCGGGCCEEEEEECTTCCCEEEEEEETTTTEEEECGGGBTTEEEEEETT-TTEEEEEEC
T ss_pred             eECCceECCCCCEEEEEEEcCCCCCCCceEccccCCCcceeeeeeccccccccccccccccceEEecccc-cceEEeeee
Confidence            33445789999999999998743  456889872  211      1111         111222222221 123468999


Q ss_pred             ccCCCCCeEEEEEEE
Q psy7036          75 DVIETDAGLYKVKAK   89 (254)
Q Consensus        75 ~~~~~d~G~Y~C~~~   89 (254)
                      +++.+|++.|.|...
T Consensus        85 sL~~eDtA~YYCAr~   99 (130)
T d1rzga1          85 SLRSEDTAVFYCASP   99 (130)
T ss_dssp             SCCGGGCEEEEEEEC
T ss_pred             ecCCCccEEEEEEEe
Confidence            999999999999754

>d1ugna1 b.1.1.4 (A:2-97) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.04  E-value=2.2e-06  Score=50.35  Aligned_cols=65  Identities=14%  Similarity=0.127  Sum_probs=43.3

Q ss_pred             eecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEc
Q psy7036         123 QEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKN  193 (254)
Q Consensus       123 ~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~  193 (254)
                      .+..|++++|.|... .+...+.++|++...............     .+.+.|.+++..|+|.|+|....
T Consensus        14 ~V~~G~~VTL~C~~~-~~~~~f~L~keg~~~~~~~~~~~~~~~-----~a~F~i~~v~~~~~G~Y~C~y~~   78 (96)
T d1ugna1          14 VITQGSPVTLRCQGG-QETQEYRLYREKKTAPWITRIPQELVK-----KGQFPIPSITWEHTGRYRCYYGS   78 (96)
T ss_dssp             EEETTCCEEEEEECC-TTCCCEEEEESSSCCHHHHTSCHHHHT-----TTEEEESSCCGGGCEEEEEEEEE
T ss_pred             ccCCCCcEEEEEeCC-CCCCEEEEEECCCCcccEEEccCCCCC-----EEEEEEEecCHHHCCeEEEEEeC
Confidence            467899999999963 445578888987532110000000001     13799999999999999998754

>d2p49b1 b.1.1.1 (B:1-121) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=98.04  E-value=2.2e-05  Score=47.20  Aligned_cols=71  Identities=17%  Similarity=0.275  Sum_probs=46.5

Q ss_pred             eeecCCCeEEEEEEEeeCCC--CeEEEEECC--Ee------cc---------cCCcceEEEcCCCCceeeEEEEccCCCC
Q psy7036         122 RQEDDGKRLLFECRIQADPA--PTVIWSHSG--VQ------VK---------EDKRHKFSIDKDGHSYFASLEIIDVTIE  182 (254)
Q Consensus       122 ~~~~~g~~~~l~C~~~~~~~--~~~~W~~~~--~~------~~---------~~~~~~~~~~~~~~~~~~~l~i~~~~~~  182 (254)
                      ..+.+|++++|.|.+.|+..  -.+.|+|..  +.      +.         ..-..++.+..+.......|.|.+++.+
T Consensus        10 ~lvkPg~sl~LsC~~SG~s~s~y~~~WvRQ~PGkglewv~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~yLq~~~L~~e   89 (121)
T d2p49b1          10 GLVQAGGSLRLSCAASGYAYTYIYMGWFRQAPGKEREGVAAMDSGGGGTLYADSVKGRFTISRDKGKNTVYLQMDSLKPE   89 (121)
T ss_dssp             EEEETTCCEEEEEEEESCSSCCSEEEEEEECTTSCCEEEEEEETTSCSCEECGGGTTTEEEECTTSTTEEEEEECSCCGG
T ss_pred             ceECCCCCeEEEEEEcCCCcccCceeeccCCCCCceeeeeecCCcccccccccceeEeEEEeecCCceEEEEEeeecccc
Confidence            45678999999999987643  347888732  11      11         1111234444444333457999999999


Q ss_pred             CceeEEEEEE
Q psy7036         183 DAGKYKVTAK  192 (254)
Q Consensus       183 d~G~y~C~~~  192 (254)
                      |.+.|.|...
T Consensus        90 DtAvYYCAr~   99 (121)
T d2p49b1          90 DTATYYCAAG   99 (121)
T ss_dssp             GCEEEEEEES
T ss_pred             ceeEEeeecc
Confidence            9999999753

>d1ugna2 b.1.1.4 (A:98-195) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.04  E-value=2e-05  Score=46.33  Aligned_cols=69  Identities=16%  Similarity=0.081  Sum_probs=41.8

Q ss_pred             eecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcC
Q psy7036         123 QEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNE  194 (254)
Q Consensus       123 ~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~  194 (254)
                      .+..|++++|.|... .....+.++|++........  ...........+.+.|.+++..|+|.|+|.....
T Consensus        14 ~v~~G~~VTL~C~~~-~~~~~f~L~k~g~~~~~~~~--~~~~~~~~~~~a~F~l~~v~~~~~G~Y~C~y~~~   82 (98)
T d1ugna2          14 VVNSGGNVTLQCDSQ-VAFDGFILCKEGEDEHPQCL--NSQPHARGSSRAIFSVGPVSPSRRWWYRCYAYDS   82 (98)
T ss_dssp             EEETTCCEEEEEECS-SCCSEEEEEEC------CEE--EC------CCEEEEEECCCCTTSCEEEEEEEECT
T ss_pred             ccCCCCcEEEEeCCC-CCCCEEEEEECCCcCCcEee--eeEEcCCCceEEEEEeeecccCCCeEEEEeeEcC
Confidence            477899999999863 33557888887765321110  0000111112357999999999999999987654

>d1i8lc_ b.1.1.1 (C:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.03  E-value=1.9e-05  Score=48.26  Aligned_cols=74  Identities=12%  Similarity=0.078  Sum_probs=45.4

Q ss_pred             CCeeeecCCCeEEEEEEEeeCCCC---eEEEEECCE--e---cc----cC------CcceEEEcCCCCceeeEEEEccCC
Q psy7036         119 PSIRQEDDGKRLLFECRIQADPAP---TVIWSHSGV--Q---VK----ED------KRHKFSIDKDGHSYFASLEIIDVT  180 (254)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~~~~---~~~W~~~~~--~---~~----~~------~~~~~~~~~~~~~~~~~l~i~~~~  180 (254)
                      +..+.+.+|+.++|.|........   .+.|+|...  .   +.    ..      .+.......  ....+.|.|.+++
T Consensus         6 P~~~~~~~g~~vtL~C~~~~~~~~~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~L~I~~l~   83 (118)
T d1i8lc_           6 PAVVLASSRGIASFVCEYASPGKATEVRVTVLRQADSQVTEVCAATYMMGNELTFLDDSICTGTS--SGNQVNLTIQGLR   83 (118)
T ss_dssp             CSEEECCSSSCEEEEEEECCCSCCSEEEEEEEEESTTCCCEEEEEEEETTSCCCCCSSCSCCCCB--CSSEEEEEECSCC
T ss_pred             CCEEEEeCCCcEEEEEEccccccccceeEEEEEECCCCeeEEEEEEeCCCCEecccCCcEEeEcC--CCCEEEEEeeccc
Confidence            345667789999999997543322   488998421  1   00    00      000000111  1124589999999


Q ss_pred             CCCceeEEEEEEcC
Q psy7036         181 IEDAGKYKVTAKNE  194 (254)
Q Consensus       181 ~~d~G~y~C~~~~~  194 (254)
                      .+|+|.|.|.+...
T Consensus        84 ~~Dsa~YyCa~~~~   97 (118)
T d1i8lc_          84 AMDTGLYICKVELM   97 (118)
T ss_dssp             GGGCEEEEEEEEEE
T ss_pred             cCCCEEEEEeEecc
Confidence            99999999987653

>d1rjca1 b.1.1.1 (A:2-127) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=98.03  E-value=3e-05  Score=47.10  Aligned_cols=72  Identities=15%  Similarity=0.260  Sum_probs=44.4

Q ss_pred             ceeecCCCeEEEEEEEeeCC--CCceEEEeC--CE------EeeeC---------CcceEEEeecCCcceEEEEEEeccC
Q psy7036          17 LRQEDEGNRLIFECQLLCNP--KPDIVWFRG--ET------QLSED---------TRTVMKTTPIGTNKYLVALELDDVI   77 (254)
Q Consensus        17 ~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~--~~------~~~~~---------~~~~~~~~~~~~~~~~~~l~i~~~~   77 (254)
                      ...+.+|+++.|+|.+.|..  ...+.|+|.  |+      .+...         -+.++....+.. .....|+|.+++
T Consensus         8 ~~lvkPg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~~~kgR~tis~D~s-~~~~~L~i~~l~   86 (126)
T d1rjca1           8 GGSVQAGQSLRLSCATSGATSSSNCMGWFRQAPGKEREGVAVIDTGRGNTAYADSVQGRLTISLDNA-KNTLYLQMNSLK   86 (126)
T ss_dssp             CEEECTTCCEEEEEECC-CTTTCSEEEEEEECTTSCCEEEEEEETTTCCEEECTTTTTTEEEEEEC---CEEEEEECSCC
T ss_pred             CceECCCCCeEEEEEECCCCCcCCceEeeeeCCCcceEeeeccccccccccccccceeeEEEEecCC-ceEEEEEEeccC
Confidence            34688999999999998743  456789873  21      11111         111222222211 223369999999


Q ss_pred             CCCCeEEEEEEE
Q psy7036          78 ETDAGLYKVKAK   89 (254)
Q Consensus        78 ~~d~G~Y~C~~~   89 (254)
                      .+|++.|.|...
T Consensus        87 ~eDTAvYYCAr~   98 (126)
T d1rjca1          87 PEDTAMYYCAAD   98 (126)
T ss_dssp             GGGCEEEEEEEC
T ss_pred             cccCceeEEEee
Confidence            999999999754

>d2h26a1 b.1.1.2 (A:184-279) CD1, alpha-3 domain {Human (Homo sapiens), CD1a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: CD1, alpha-3 domain
species: Human (Homo sapiens), CD1a [TaxId: 9606]

Probab=98.03  E-value=1.5e-05  Score=46.69  Aligned_cols=67  Identities=16%  Similarity=0.222  Sum_probs=44.2

Q ss_pred             CCeEEEEEEEeeCCC-C-eEEEEECCEecccCCcceEEEcCCCC-ceeeEEEEccCCCCCceeEEEEEEcCCC
Q psy7036         127 GKRLLFECRIQADPA-P-TVIWSHSGVQVKEDKRHKFSIDKDGH-SYFASLEIIDVTIEDAGKYKVTAKNELG  196 (254)
Q Consensus       127 g~~~~l~C~~~~~~~-~-~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~G~y~C~~~~~~~  196 (254)
                      ++.++|.|.+.++.+ . .+.|.+++..+............++. ...+.|.+..   ++...|+|.+.+...
T Consensus        16 ~~~vtL~C~a~gF~P~~i~v~W~~~~~~~~~~~~~~~~~~~dgty~~~S~L~v~~---~~~~~ytC~V~H~sL   85 (96)
T d2h26a1          16 PGRLQLVCHVSGFYPKPVWVMWMRGEQEQQGTQLGDILPNANWTWYLRATLDVAD---GEAAGLSCRVKHSSL   85 (96)
T ss_dssp             TTEEEEEEEEEEEBSSCEEEEEEETTEECTTCEECCCEECTTSCEEEEEEEEEEG---GGCTTEEEEEEEGGG
T ss_pred             CCeEEEEEEEEEEECCCcEEEEEECcccCCCceeCccEeCCCCcEEEEEEEEEeC---ccCCEEEEEEEeCCC
Confidence            457999999998643 3 69999999877544332333334433 3345666654   345589999998653

>d1vgeh1 b.1.1.1 (H:1-122) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=98.03  E-value=2.1e-05  Score=47.39  Aligned_cols=74  Identities=12%  Similarity=0.254  Sum_probs=47.1

Q ss_pred             CeeeecCCCeEEEEEEEeeCCCC--eEEEEECC--Ee------ccc---------CCcceEEEcCCCCceeeEEEEccCC
Q psy7036         120 SIRQEDDGKRLLFECRIQADPAP--TVIWSHSG--VQ------VKE---------DKRHKFSIDKDGHSYFASLEIIDVT  180 (254)
Q Consensus       120 ~~~~~~~g~~~~l~C~~~~~~~~--~~~W~~~~--~~------~~~---------~~~~~~~~~~~~~~~~~~l~i~~~~  180 (254)
                      ....+.+|+++.|.|.+.|+...  .+.|+|..  +.      +..         .-..++.+..+.......|.|.+++
T Consensus         9 g~~~vkpg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwlg~i~~~~~~~~ya~s~kgR~tiS~D~s~ntvyL~~~~L~   88 (122)
T d1vgeh1           9 GAEVKKPGASVKVSCKASGYSFTSYGLHWVRQAPGQRLEWMGWISAGTGNTKYSQKFRGRVTFTRDTSATTAYMGLSSLR   88 (122)
T ss_dssp             CCEEECTTCCEEEEEEECSSCGGGSEEEEEEECTTSCEEEEEEEETTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCcEECCCCCEEEEEEEcCCCccCCCceeeEeCCCCceeeeeeecCcccccccccceeEeeEEeccCCcceeeecccccC
Confidence            44567899999999999886532  47888731  11      111         1112333333322223469999999


Q ss_pred             CCCceeEEEEEEc
Q psy7036         181 IEDAGKYKVTAKN  193 (254)
Q Consensus       181 ~~d~G~y~C~~~~  193 (254)
                      .+|++.|.|....
T Consensus        89 ~eDtA~YYCAr~~  101 (122)
T d1vgeh1          89 PEDTAVYYCARDP  101 (122)
T ss_dssp             GGGCEEEEEEEET
T ss_pred             CCcceEEEEeecC
Confidence            9999999997653

>d1xiwa_ b.1.1.4 (A:) CD3 epsilon chain ectodomain fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 epsilon chain ectodomain fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.03  E-value=6.4e-06  Score=45.79  Aligned_cols=75  Identities=17%  Similarity=0.345  Sum_probs=47.8

Q ss_pred             cCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCC-CCCeEEEEEEEcCCC-ceEEE
Q psy7036          21 DEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIE-TDAGLYKVKAKNKMG-EVAAS   98 (254)
Q Consensus        21 ~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~-~d~G~Y~C~~~~~~~-~~~~~   98 (254)
                      ..|.+|+|+|...  ....+.|.+++..+..............      .|.+.+-+. .++|.|.|.+..... .....
T Consensus         8 ISGTtV~LTCP~~--~~~~i~W~~n~~~~~~~~~~~~~~~~~~------~l~L~dfSe~e~sGyY~C~~~~~~~~~~~~~   79 (91)
T d1xiwa_           8 ISGTTVILTCPQY--PGSEILWQHNDKNIGGDEDDKNIGSDED------HLSLKEFSELEQSGYYVCYPRGSKPEDANFY   79 (91)
T ss_dssp             EETTEEEEECSSC--TTSCEEEEETTEEESSSCSCTTEEEETT------EEEETTCCHHHHCEEEEEEETTSCGGGCCEE
T ss_pred             EeCCEEEEECCCC--CCCceeeeeccccccCCCcccccccccc------eEEecccCccccCceEEEEcCCCCCCCcceE
Confidence            5799999999743  4567999999988765432111111111      578888776 799999999864322 22334


Q ss_pred             EEEEE
Q psy7036          99 INLNF  103 (254)
Q Consensus        99 ~~l~v  103 (254)
                      ..|++
T Consensus        80 LYLKA   84 (91)
T d1xiwa_          80 LYLRA   84 (91)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            45544

>d1qnzh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.03  E-value=9.1e-06  Score=49.11  Aligned_cols=71  Identities=17%  Similarity=0.257  Sum_probs=44.0

Q ss_pred             eeecCCCeEEEEEEEeeCCC--CeEEEEEC--CEe------cc---------cCCcceEEEcCCCCceeeEEEEccCCCC
Q psy7036         122 RQEDDGKRLLFECRIQADPA--PTVIWSHS--GVQ------VK---------EDKRHKFSIDKDGHSYFASLEIIDVTIE  182 (254)
Q Consensus       122 ~~~~~g~~~~l~C~~~~~~~--~~~~W~~~--~~~------~~---------~~~~~~~~~~~~~~~~~~~l~i~~~~~~  182 (254)
                      ..+.+|++++|.|.+.|+..  -.+.|++.  |+.      +.         .....++....+.......|.|.+++.+
T Consensus        10 ~~~kpG~Sv~LsC~~SG~s~~~y~~~WyRQ~PGkgle~l~~i~~~~~~~~y~~~~~gR~tis~d~s~~~~~L~i~~L~~e   89 (119)
T d1qnzh_          10 ELVKPGASVKMSCKASGYTFTTYPIEWMKQNHGKSLEWIGNFHPYSDDTNYNEKFKGKAKLTVEKSSSTVYLEFSRLTSD   89 (119)
T ss_dssp             CEECTTEEEEEEEEEETCCSSSSCEEEEEEETTSCCEEEEEEETTTTEECCCTTTTTTEEEEEETTTTEEEEEEEEECGG
T ss_pred             ceECCCCCEEEEEEEeccCCCCCCcceeeecCCCcceEeeccCCcccccchhhhhcccceeecccccceeeeeecccCcc
Confidence            35678999999999887542  24889873  211      11         0111122222222222346999999999


Q ss_pred             CceeEEEEEE
Q psy7036         183 DAGKYKVTAK  192 (254)
Q Consensus       183 d~G~y~C~~~  192 (254)
                      |++.|.|...
T Consensus        90 DsAvYYCA~~   99 (119)
T d1qnzh_          90 DSAVYYCAIH   99 (119)
T ss_dssp             GCEEEEEEEC
T ss_pred             ceeEEEEEEe
Confidence            9999999653

>d1dqta_ b.1.1.1 (A:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.02  E-value=2.4e-05  Score=47.74  Aligned_cols=72  Identities=14%  Similarity=0.027  Sum_probs=43.9

Q ss_pred             CeeeecCCCeEEEEEEEeeCCCC---eEEEEEC--CEec------cc-------CCcceEEEcCCCCceeeEEEEccCCC
Q psy7036         120 SIRQEDDGKRLLFECRIQADPAP---TVIWSHS--GVQV------KE-------DKRHKFSIDKDGHSYFASLEIIDVTI  181 (254)
Q Consensus       120 ~~~~~~~g~~~~l~C~~~~~~~~---~~~W~~~--~~~~------~~-------~~~~~~~~~~~~~~~~~~l~i~~~~~  181 (254)
                      ..+.+..|+.++|.|........   .+.|+|.  ++..      ..       ..+.......+.  ..+.|.|.+++.
T Consensus         7 ~~~~~~~g~~v~L~C~~~~~~~~~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~L~I~~l~~   84 (117)
T d1dqta_           7 SVVLASSHGVASFPCEYSPSHNTDEVRVTVLRQTNDQMTEVCATTFTEKNTVGFLDYPFCSGTFNE--SRVNLTIQGLRA   84 (117)
T ss_dssp             SEEECCTTSCEEEEEEEESCCTTCEEEEEEEEECSSCEEEEEEEEECSSSBEECTTCTTEEEEEET--TEEEEEECSCCG
T ss_pred             CEEEEcCCCcEEEEEECccCCcccceeEEEEEeCCCCCcEEEEEEeCCcccccCCCCcEEEEeCCC--CEEEEEhhcCcc
Confidence            45567789999999997543322   3779983  2211      00       001111111111  135899999999


Q ss_pred             CCceeEEEEEEc
Q psy7036         182 EDAGKYKVTAKN  193 (254)
Q Consensus       182 ~d~G~y~C~~~~  193 (254)
                      +|+|.|.|.+..
T Consensus        85 ~Dsa~YyCa~~~   96 (117)
T d1dqta_          85 VDTGLYLCKVEL   96 (117)
T ss_dssp             GGCEEEEEEEEE
T ss_pred             ccCEeEEEEEec
Confidence            999999998764

>d1i1ca1 b.1.1.2 (A:239-341) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.02  E-value=1.1e-05  Score=48.09  Aligned_cols=74  Identities=12%  Similarity=0.158  Sum_probs=46.0

Q ss_pred             CCCeEEEEEEEeeC-CC---CeEEEEECCEecccCCcceEEEcCCC-CceeeEEEEccCCCCCceeEEEEEEcCCCcce
Q psy7036         126 DGKRLLFECRIQAD-PA---PTVIWSHSGVQVKEDKRHKFSIDKDG-HSYFASLEIIDVTIEDAGKYKVTAKNELGESN  199 (254)
Q Consensus       126 ~g~~~~l~C~~~~~-~~---~~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~  199 (254)
                      .+..++|.|.+.++ |.   ..+.|.++|..+............++ +...+.|.|..-.......|+|.+.+......
T Consensus        15 ~~~t~~l~Clv~~f~p~~~~v~v~W~~~g~~~~~~~~~~~~~~~~gtys~~S~L~v~~~~W~~g~~~tC~V~H~~l~~p   93 (103)
T d1i1ca1          15 GGLTPKVTCVVVDISQNDPEVRFSWFIDDVEVHTAQTHAPEKQSNSTLRSVSELPIVERDWLNGKTFKCKVNSGAFPAP   93 (103)
T ss_dssp             SSSCCEEEEEEEEECTTCCCCEEEEEESSCEECCCEECCCEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECSSSSSC
T ss_pred             cCCCcEEEEEEEeeECCCCCEEEEEEECCccccCCEECCcEECCCCCEEEEEEEEECHHHhcCCCEEEEEEEeCCCCCc
Confidence            45668899999874 43   47899999987654432223333333 23345666554444444579999998765443

>d1jbja2 b.1.1.4 (A:1-100) CD3 epsilon chain ectodomain fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 epsilon chain ectodomain fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.02  E-value=5.6e-06  Score=46.60  Aligned_cols=55  Identities=22%  Similarity=0.408  Sum_probs=40.7

Q ss_pred             eecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCC-CCCeEEEEEEE
Q psy7036          19 QEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIE-TDAGLYKVKAK   89 (254)
Q Consensus        19 ~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~-~d~G~Y~C~~~   89 (254)
                      +-..|.+|+|+|+..+  .-.+.|.+++..+......              .|.+.+.+. .++|.|.|...
T Consensus        10 VSISGTtV~LTCP~~~--~~~I~Wkkn~~~i~g~~~~--------------~L~L~~FSE~e~SGyY~C~~~   65 (100)
T d1jbja2          10 VSISGTSVELTCPLDS--DENLKWEKNGQELPQKHDK--------------HLVLQDFSEVEDSGYYVCYTP   65 (100)
T ss_dssp             EEEETTEEEEECSSCC--CTTCEEEETTEEECSCCCS--------------EEEEESCCTTTSCEEEEEECS
T ss_pred             EEEeCCEEEEECCCCC--CCceEEeeccccCCCCCCc--------------EEEEccccccccCcceEEecC
Confidence            3457999999998753  3469999999988754322              466777654 79999999643

>d1hyrc1 b.1.1.2 (C:181-274) Class I MHC homolog, alpha-3 domain {Human (Homo sapiens), Mic-a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC homolog, alpha-3 domain
species: Human (Homo sapiens), Mic-a [TaxId: 9606]

Probab=98.01  E-value=1.2e-05  Score=46.94  Aligned_cols=66  Identities=15%  Similarity=0.309  Sum_probs=40.7

Q ss_pred             CCeEEEEEEEeeCCC--CeEEEEECCEecccCCcc--eEEEcCCC-CceeeEEEEccCCCCCceeEEEEEEcCC
Q psy7036         127 GKRLLFECRIQADPA--PTVIWSHSGVQVKEDKRH--KFSIDKDG-HSYFASLEIIDVTIEDAGKYKVTAKNEL  195 (254)
Q Consensus       127 g~~~~l~C~~~~~~~--~~~~W~~~~~~~~~~~~~--~~~~~~~~-~~~~~~l~i~~~~~~d~G~y~C~~~~~~  195 (254)
                      +..++|.|.+.++.+  ..++|.++|..+......  ......++ +...+.|.+..   ++...|+|.+.+..
T Consensus        15 ~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~~~~ty~~~s~l~v~~---~~~~~ytC~V~H~~   85 (94)
T d1hyrc1          15 EGNITVTCRASGFYPWNITLSWRQDGVSLSHDTQQWGDVLPDGNGTYQTWVATRICQ---GEEQRFTCYMEHSG   85 (94)
T ss_dssp             SSEEEEEEEEEEEBSSCCEEEEEETTEECCSTTSEECCCEECSSSCEEEEEEEEEET---TCGGGEEEEEEETT
T ss_pred             CCCEEEEEEEEEEECCCcEEEEeECCeEcCCCeEEcCceEECCCCcEEEEEEEEEcC---CCCCEEEEEEEECC
Confidence            456899999998643  369999999987644322  11222222 22334455443   33447999998753

>d1eapb1 b.1.1.1 (B:1-124) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.01  E-value=1.2e-05  Score=48.30  Aligned_cols=71  Identities=15%  Similarity=0.265  Sum_probs=44.9

Q ss_pred             eeeecCCCeEEEEEEEeeCCCC--eEEEEEC--CEe------cccCC---------cceEEEcCCCCceeeEEEEccCCC
Q psy7036         121 IRQEDDGKRLLFECRIQADPAP--TVIWSHS--GVQ------VKEDK---------RHKFSIDKDGHSYFASLEIIDVTI  181 (254)
Q Consensus       121 ~~~~~~g~~~~l~C~~~~~~~~--~~~W~~~--~~~------~~~~~---------~~~~~~~~~~~~~~~~l~i~~~~~  181 (254)
                      ...+.+|+++.|.|.+.|+...  .+.|+|.  |+.      +....         ..++....+.......|.|.+++.
T Consensus         9 ~~~~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgRftiSrD~s~nt~~L~~~sL~~   88 (119)
T d1eapb1           9 TELVKPGASVKISCKASGYISTDHAIHWVKQRPEQGLEWIGYISPGNGDIKYNEKFKVKATLTADQSSSTAYMQLNSLTS   88 (119)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECSSSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECSCCG
T ss_pred             CceECCCCCEEEEEEEccCcccCCCCccceeCCcccceeeeecCCcccchhhhhhhhcceEEEcccCcceEEeeeecccC
Confidence            3456789999999999886433  4788873  111      11110         112333322222234799999999


Q ss_pred             CCceeEEEEE
Q psy7036         182 EDAGKYKVTA  191 (254)
Q Consensus       182 ~d~G~y~C~~  191 (254)
                      +|.+.|.|..
T Consensus        89 eDTAvYYCAr   98 (119)
T d1eapb1          89 EDSAVYFCKR   98 (119)
T ss_dssp             GGCEEEEEEE
T ss_pred             CcceEEEEEE
Confidence            9999999964

>d2fbjh2 b.1.1.2 (H:119-220) Immunoglobulin heavy chain alpha constant domain 1, CH1-alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 1, CH1-alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.01  E-value=1.7e-05  Score=47.07  Aligned_cols=72  Identities=14%  Similarity=0.237  Sum_probs=46.4

Q ss_pred             CCCeEEEEEEEeeC-CCC--eEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCc
Q psy7036         126 DGKRLLFECRIQAD-PAP--TVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGE  197 (254)
Q Consensus       126 ~g~~~~l~C~~~~~-~~~--~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~  197 (254)
                      .++.+.|.|.+.++ |..  .+.|.+++..+...........++.+...+.|.|..-.......|+|.|.+....
T Consensus        18 ~~~~v~L~Clv~gF~P~~~i~v~W~~~~~~~~~~~~~~~~~~~gtys~~S~L~v~~~~W~~~~~ytC~V~H~s~~   92 (102)
T d2fbjh2          18 SSDPVIIGCLIHDYFPSGTMNVTWGKSGKDITTVNFPPALASGGRYTMSNQLTLPAVECPEGESVKCSVQHDSNP   92 (102)
T ss_dssp             CCSSEEEEEEEEEEBSCCCEEEEESCCCSSCEEEECCCEECSSSCEEEEEEEEECGGGSCTTCEEEEEEEETTSC
T ss_pred             CCCcEEEEEEEEcccCCCcEEEEEccCCCcCceeEeeeEecCCCCEEEEEEEEEeHHHccCCCEEEEEEEECCCC
Confidence            46779999999995 443  4778888765543222222222233445677888777666666899999986543

>d1rz7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=98.01  E-value=1.7e-05  Score=47.65  Aligned_cols=72  Identities=18%  Similarity=0.308  Sum_probs=46.0

Q ss_pred             eeeecCCCeEEEEEEEeeCCCC--eEEEEECC--Ee------cc---------cCCcceEEEcCCCCceeeEEEEccCCC
Q psy7036         121 IRQEDDGKRLLFECRIQADPAP--TVIWSHSG--VQ------VK---------EDKRHKFSIDKDGHSYFASLEIIDVTI  181 (254)
Q Consensus       121 ~~~~~~g~~~~l~C~~~~~~~~--~~~W~~~~--~~------~~---------~~~~~~~~~~~~~~~~~~~l~i~~~~~  181 (254)
                      ...+.+|+++.|.|.+.|+...  .+.|+|..  +.      +.         ..-..++.+..+.......|.|.+++.
T Consensus         9 ~~~~kpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewv~~i~~~~~~~~ya~s~kgRftiSrD~s~nt~yLqm~sL~~   88 (119)
T d1rz7h1           9 AEVKKPGATVKISCKASGYTFSDFYMYWVRQAPGKGLEWMGLIDPEDADTMYAEKFRGRVTITADTSTDTGYLELSSLRS   88 (119)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CceECCCCCEEEEEEEcCCCCcCCceEccccCCccceeeeeecCCcccccccccceeeeEEEecccCceEEEeeeeccCc
Confidence            4456789999999999986533  47888731  11      11         111123333333333334799999999


Q ss_pred             CCceeEEEEEE
Q psy7036         182 EDAGKYKVTAK  192 (254)
Q Consensus       182 ~d~G~y~C~~~  192 (254)
                      +|.+.|.|...
T Consensus        89 eDTAvYYCAr~   99 (119)
T d1rz7h1          89 EDTAVYYCAAD   99 (119)
T ss_dssp             GGCEEEEEEEC
T ss_pred             ccceEEEEeec
Confidence            99999999654

>d1q9rb1 b.1.1.1 (B:1-111) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=98.01  E-value=4.5e-05  Score=45.96  Aligned_cols=73  Identities=11%  Similarity=0.200  Sum_probs=46.1

Q ss_pred             ceeecCCCeEEEEEEEeeCC--CCceEEEeC--CE------Eeee-----------CCcceEEEeecCCcceEEEEEEec
Q psy7036          17 LRQEDEGNRLIFECQLLCNP--KPDIVWFRG--ET------QLSE-----------DTRTVMKTTPIGTNKYLVALELDD   75 (254)
Q Consensus        17 ~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~--~~------~~~~-----------~~~~~~~~~~~~~~~~~~~l~i~~   75 (254)
                      ...+++|++++|+|.+.|..  ...+.|+|.  |+      .+..           .-+.++....+.. .-...|++.+
T Consensus         9 ~~~vkpg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewv~~i~~~~~~~~~~Y~~s~kgRftiSrD~s-~nt~~L~~~s   87 (122)
T d1q9rb1           9 GGLVQSGGSLRLSCATSGFTFTDYYMSWVRQPPGKALEWLGFIRNKANGYTTEYSPSVKGRFTISRDNS-QSILYLQMNT   87 (122)
T ss_dssp             CCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECCGGGTTCEEECTTTBTTEEEEEETT-TTEEEEEECS
T ss_pred             CceECCCCCEEEEEEEcCCCCcCCccCccccCCCcceeeeeeccccccCCcchhchheeecceeeeecc-cceeccceee
Confidence            34688999999999998743  446889873  21      1110           1111222222222 2223699999


Q ss_pred             cCCCCCeEEEEEEEc
Q psy7036          76 VIETDAGLYKVKAKN   90 (254)
Q Consensus        76 ~~~~d~G~Y~C~~~~   90 (254)
                      ++.+|.+.|.|....
T Consensus        88 L~~eDTAvYYCar~~  102 (122)
T d1q9rb1          88 LRAEDSATYYCARDH  102 (122)
T ss_dssp             CCGGGCEEEEEEECC
T ss_pred             eccCcceEEEEEecC
Confidence            999999999997643

>d1ncwh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]

Probab=98.01  E-value=1.4e-05  Score=47.92  Aligned_cols=72  Identities=18%  Similarity=0.279  Sum_probs=45.9

Q ss_pred             eeeecCCCeEEEEEEEeeCCCC---eEEEEEC--CEec------c--------cCCcceEEEcCCCCceeeEEEEccCCC
Q psy7036         121 IRQEDDGKRLLFECRIQADPAP---TVIWSHS--GVQV------K--------EDKRHKFSIDKDGHSYFASLEIIDVTI  181 (254)
Q Consensus       121 ~~~~~~g~~~~l~C~~~~~~~~---~~~W~~~--~~~~------~--------~~~~~~~~~~~~~~~~~~~l~i~~~~~  181 (254)
                      ...+.+|+.+.|.|.+.|+...   .+.|+|.  |+.+      .        ..-..++....+.......|.|.+++.
T Consensus         9 ~~~vkPg~sl~LsC~~SG~s~~s~y~~~WvRQ~PGkglEwig~i~~~~~t~y~~s~kgR~TiS~D~s~nt~~L~~~sL~~   88 (119)
T d1ncwh1           9 PGLVKPSQSLSLTCTVTGYSITSDFAWNWIRQFPGNKLEWMGYINYSGFTSHNPSLKSRISITRDTSKNQFFLQLNSVTT   88 (119)
T ss_dssp             CSEECTTSCEEEEEEEESSCTTSSEEEEEEEEETTTEEEEEEEEETTSCEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CcEECCCCCEEEEEEEccccccCCCccccceECCCcceeeeeeccccccchhchhccccceEecccccceeecccccccc
Confidence            3457789999999999987543   3678863  2111      1        111112333333333334799999999


Q ss_pred             CCceeEEEEEE
Q psy7036         182 EDAGKYKVTAK  192 (254)
Q Consensus       182 ~d~G~y~C~~~  192 (254)
                      +|.+.|.|...
T Consensus        89 eDTAvYYCAr~   99 (119)
T d1ncwh1          89 EDTATYYCAGL   99 (119)
T ss_dssp             GGCEEEEEEEE
T ss_pred             CCceEEEEeEe
Confidence            99999999644

>d1pg7x1 b.1.1.1 (X:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.00  E-value=1.9e-05  Score=47.65  Aligned_cols=72  Identities=17%  Similarity=0.285  Sum_probs=45.3

Q ss_pred             eeeecCCCeEEEEEEEeeCCC--CeEEEEEC--CEec------ccC---------CcceEEEcCCCCceeeEEEEccCCC
Q psy7036         121 IRQEDDGKRLLFECRIQADPA--PTVIWSHS--GVQV------KED---------KRHKFSIDKDGHSYFASLEIIDVTI  181 (254)
Q Consensus       121 ~~~~~~g~~~~l~C~~~~~~~--~~~~W~~~--~~~~------~~~---------~~~~~~~~~~~~~~~~~l~i~~~~~  181 (254)
                      ...+.+|+.++|.|.+.+...  -.+.|+|.  |+.+      ...         -..++....+.......|.|.+++.
T Consensus         9 ~~~vkpG~sl~LsC~~SG~s~~~~~~~W~RQ~PGk~lewl~~i~~~~~~~~y~~~~kgR~tis~d~s~n~v~L~i~~l~~   88 (120)
T d1pg7x1           9 PELVKPGASVKISCKASGYSFTGHLLNWVKQSHGKNLEWIGLVHPHNGAITYNQKFKDKATLTVDRSSTTAYIELVRLTS   88 (120)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CcEECCCCCEEEEEEEccccCCCCCcceeeecCCCceEEeeecCccccchhhhHHhhhcceeeeccCcceEEccccccCC
Confidence            345778999999999987642  35788873  2111      100         0112322222222234699999999


Q ss_pred             CCceeEEEEEE
Q psy7036         182 EDAGKYKVTAK  192 (254)
Q Consensus       182 ~d~G~y~C~~~  192 (254)
                      +|++.|.|...
T Consensus        89 eDtA~YYCAr~   99 (120)
T d1pg7x1          89 NDSAVYYCARE   99 (120)
T ss_dssp             GGCEEEEEEEE
T ss_pred             CcceEEEeeec
Confidence            99999999864

>d1n0xh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=98.00  E-value=1.5e-05  Score=48.33  Aligned_cols=72  Identities=13%  Similarity=0.282  Sum_probs=46.1

Q ss_pred             CeeeecCCCeEEEEEEEeeCCCC--eEEEEEC--CEe------cc---------cCCcceEEEcCCCCceeeEEEEccCC
Q psy7036         120 SIRQEDDGKRLLFECRIQADPAP--TVIWSHS--GVQ------VK---------EDKRHKFSIDKDGHSYFASLEIIDVT  180 (254)
Q Consensus       120 ~~~~~~~g~~~~l~C~~~~~~~~--~~~W~~~--~~~------~~---------~~~~~~~~~~~~~~~~~~~l~i~~~~  180 (254)
                      ....+.+|+++.|.|.+.|+...  .+.|+|.  |+.      +.         ..-..++.+..+.......|.|.+++
T Consensus         8 g~~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglew~g~i~~~~~~~~ya~s~kgR~tiS~D~s~nt~yL~~~~L~   87 (127)
T d1n0xh1           8 GAEVKKPGASVKVSCQASGYRFSNFVIHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTAYMELRSLR   87 (127)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECTTTCCEEECTTTTTTEEEEEEGGGTEEEEEECSCC
T ss_pred             CCceECCCCCEEEEEEEcCCCCCCCCEEEEEeCCCCcceeeeecCccccccccchhccccceEecccCceEEEEEEEccC
Confidence            34567889999999999986533  4788873  111      11         11112333333332333469999999


Q ss_pred             CCCceeEEEEE
Q psy7036         181 IEDAGKYKVTA  191 (254)
Q Consensus       181 ~~d~G~y~C~~  191 (254)
                      .+|.+.|.|.-
T Consensus        88 ~eDtAvYYCAR   98 (127)
T d1n0xh1          88 SADTAVYYCAR   98 (127)
T ss_dssp             GGGCEEEEEEE
T ss_pred             CCCceEEEEEe
Confidence            99999999963

>d1j8he1 b.1.1.1 (E:2-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.00  E-value=7.6e-05  Score=45.10  Aligned_cols=74  Identities=11%  Similarity=0.201  Sum_probs=45.8

Q ss_pred             CCCeeeecCCCeEEEEEEEeeCCCCeEEEEEC--CEec----c----------cCCcceEEEcCCCCceeeEEEEccCCC
Q psy7036         118 KPSIRQEDDGKRLLFECRIQADPAPTVIWSHS--GVQV----K----------EDKRHKFSIDKDGHSYFASLEIIDVTI  181 (254)
Q Consensus       118 ~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~--~~~~----~----------~~~~~~~~~~~~~~~~~~~l~i~~~~~  181 (254)
                      .+..+.+.+|+.++|.|.... ....+.|||.  |+.+    .          ...........+..  ...|.|.+++.
T Consensus         6 sP~~~~~~~G~~v~l~C~~~~-~~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~L~i~~~~~   82 (113)
T d1j8he1           6 SSRYLVKRTGEKVFLECVQDM-DHENMFWYRQDPGLGLRLIYFSYDVKMKEKGDIPEGYSVSREKKE--RFSLILESAST   82 (113)
T ss_dssp             SCSEEEEETTCCEEECEEESS-CCSEEEEEEEETTTEEEEEEEESSTTCCEECSCCTTEEEECSSTT--BCEEEESSCCG
T ss_pred             cCCEEEECCCCCEEEEEEEcC-CccEEEeEEecCCCCcceeeeeeeeeeeecccccccceEEeccCc--EeeeEeccCcc
Confidence            345567788999999998643 3456889983  1110    0          00111111111111  24799999999


Q ss_pred             CCceeEEEEEEcC
Q psy7036         182 EDAGKYKVTAKNE  194 (254)
Q Consensus       182 ~d~G~y~C~~~~~  194 (254)
                      +|+|.|.|.+...
T Consensus        83 ~Dsa~YyCa~~~~   95 (113)
T d1j8he1          83 NQTSMYLCASSST   95 (113)
T ss_dssp             GGCEEEEEEEECT
T ss_pred             CCcccEEeeEccC
Confidence            9999999998753

>d1rjca1 b.1.1.1 (A:2-127) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=98.00  E-value=2.6e-05  Score=47.37  Aligned_cols=72  Identities=15%  Similarity=0.268  Sum_probs=44.9

Q ss_pred             eeeecCCCeEEEEEEEeeCCCC--eEEEEECC--Ee------cccC---------CcceEEEcCCCCceeeEEEEccCCC
Q psy7036         121 IRQEDDGKRLLFECRIQADPAP--TVIWSHSG--VQ------VKED---------KRHKFSIDKDGHSYFASLEIIDVTI  181 (254)
Q Consensus       121 ~~~~~~g~~~~l~C~~~~~~~~--~~~W~~~~--~~------~~~~---------~~~~~~~~~~~~~~~~~l~i~~~~~  181 (254)
                      ...+.+|+++.|.|.+.|+...  .+.|+|..  +.      +...         ...++....+.......|.|++++.
T Consensus         8 ~~lvkPg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~~l~~   87 (126)
T d1rjca1           8 GGSVQAGQSLRLSCATSGATSSSNCMGWFRQAPGKEREGVAVIDTGRGNTAYADSVQGRLTISLDNAKNTLYLQMNSLKP   87 (126)
T ss_dssp             CEEECTTCCEEEEEECC-CTTTCSEEEEEEECTTSCCEEEEEEETTTCCEEECTTTTTTEEEEEEC--CEEEEEECSCCG
T ss_pred             CceECCCCCeEEEEEECCCCCcCCceEeeeeCCCcceEeeeccccccccccccccceeeEEEEecCCceEEEEEEeccCc
Confidence            4567789999999999876433  47888732  11      1111         1113333333222334699999999


Q ss_pred             CCceeEEEEEE
Q psy7036         182 EDAGKYKVTAK  192 (254)
Q Consensus       182 ~d~G~y~C~~~  192 (254)
                      +|.+.|.|...
T Consensus        88 eDTAvYYCAr~   98 (126)
T d1rjca1          88 EDTAMYYCAAD   98 (126)
T ss_dssp             GGCEEEEEEEC
T ss_pred             ccCceeEEEee
Confidence            99999999754

>d2bnub1 b.1.1.1 (B:2-113) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.99  E-value=3.9e-05  Score=46.33  Aligned_cols=72  Identities=10%  Similarity=0.207  Sum_probs=44.8

Q ss_pred             CCeeeecCCCeEEEEEEEeeCCCCeEEEEEC--CEec-------------cc-CCcceEEEcCCCCceeeEEEEccCCCC
Q psy7036         119 PSIRQEDDGKRLLFECRIQADPAPTVIWSHS--GVQV-------------KE-DKRHKFSIDKDGHSYFASLEIIDVTIE  182 (254)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~--~~~~-------------~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~  182 (254)
                      +....+.+|++++|.|..... ...+.||+.  ++.+             .. ..........+..  ...|.|.++..+
T Consensus         6 P~~~~~~~G~svtl~C~~s~~-~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~L~I~~~~~~   82 (112)
T d2bnub1           6 PKFQVLKTGQSMTLQCAQDMN-HEYMSWYRQDPGMGLRLIHYSVGAGITDQGEVPNGYNVSRSTTE--DFPLRLLSAAPS   82 (112)
T ss_dssp             CSEEEEETTCCEEEEEEESSC-CSEEEEEEEETTTEEEEEEEEEETTEEEECSSCTTCEECCSSSS--BCCEEESSCCGG
T ss_pred             CCeEEECCCCCEEEEEEEECC-ccceEecccccccCccceeeEeccCceecCccccceeEecCCCC--EEEEEECCCCHH
Confidence            345567889999999986533 456999973  1110             00 0111111111111  237999999999


Q ss_pred             CceeEEEEEEc
Q psy7036         183 DAGKYKVTAKN  193 (254)
Q Consensus       183 d~G~y~C~~~~  193 (254)
                      |+|.|.|.+..
T Consensus        83 DsavYyCA~~~   93 (112)
T d2bnub1          83 QTSVYFCASSY   93 (112)
T ss_dssp             GCEEEEEEEEC
T ss_pred             HCEEEEEeecC
Confidence            99999998764

>d1mqkh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=97.99  E-value=1.7e-05  Score=47.85  Aligned_cols=72  Identities=17%  Similarity=0.322  Sum_probs=45.7

Q ss_pred             eeecCCCeEEEEEEEeeCCCC--eEEEEECC--Ee------cc---------cCCcceEEEcCCCCceeeEEEEccCCCC
Q psy7036         122 RQEDDGKRLLFECRIQADPAP--TVIWSHSG--VQ------VK---------EDKRHKFSIDKDGHSYFASLEIIDVTIE  182 (254)
Q Consensus       122 ~~~~~g~~~~l~C~~~~~~~~--~~~W~~~~--~~------~~---------~~~~~~~~~~~~~~~~~~~l~i~~~~~~  182 (254)
                      ..+.+|+.+.|.|.+.|+.-.  .+.|+|..  +.      +.         .....++.+..+.......|.|.+++.+
T Consensus        10 ~lvkPG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgR~tis~D~s~nt~~L~i~~L~~e   89 (123)
T d1mqkh_          10 DLVQPGGSLKLSCAASGFTFSSYTMSWVRQTPEKRLEWVASINNGGGRTYYPDTVKGRFTISRDNAKNTLYLQMSSLKSE   89 (123)
T ss_dssp             CEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECTTSSCEECCTTTBTTEEEEEEGGGTEEEEEECSCCGG
T ss_pred             ceECCCCCEEEEEEECcccCcCCceEeeecCCCcceeeeeecCccccccccchhccEEEEEEecCcccccccceeeeccC
Confidence            456789999999999876432  47788731  11      11         1111233333332223346999999999


Q ss_pred             CceeEEEEEEc
Q psy7036         183 DAGKYKVTAKN  193 (254)
Q Consensus       183 d~G~y~C~~~~  193 (254)
                      |.+.|.|....
T Consensus        90 DtAvYYCAr~~  100 (123)
T d1mqkh_          90 DTAMYYCVRHE  100 (123)
T ss_dssp             GCEEEEEEEEE
T ss_pred             cccceeEEecC
Confidence            99999997654

>d1zvya1 b.1.1.1 (A:2-125) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=97.99  E-value=1.4e-05  Score=48.47  Aligned_cols=72  Identities=19%  Similarity=0.331  Sum_probs=46.9

Q ss_pred             eeecCCCeEEEEEEEeeCCCC--eEEEEECC--Ee------cccC---------CcceEEEcCCCCceeeEEEEccCCCC
Q psy7036         122 RQEDDGKRLLFECRIQADPAP--TVIWSHSG--VQ------VKED---------KRHKFSIDKDGHSYFASLEIIDVTIE  182 (254)
Q Consensus       122 ~~~~~g~~~~l~C~~~~~~~~--~~~W~~~~--~~------~~~~---------~~~~~~~~~~~~~~~~~l~i~~~~~~  182 (254)
                      ..+.+|+++.|.|.+.|+...  .+.|+|..  +.      +...         -..++.+..+.......|.|.+++.+
T Consensus         9 ~lvkpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewv~~i~~~~~~~~y~~s~kgR~tis~D~s~~t~yLq~~sL~~e   88 (124)
T d1zvya1           9 GSVQAGGSLRLSCAASGSTDSIEYMTWFRQAPGKAREGVAALYTHTGNTYYTDSVKGRFTISQDKAKNMAYLRMDSVKSE   88 (124)
T ss_dssp             EECCTTCCEEEEEEEESCSTTCCEEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCCGG
T ss_pred             ceECCCCCeEEEEEEcCcccccccccccccCCccceEEEeecccccccceeccccccccEEecccccceeeceeccccCC
Confidence            457789999999999986533  58888742  11      1111         11233333333333457999999999


Q ss_pred             CceeEEEEEEc
Q psy7036         183 DAGKYKVTAKN  193 (254)
Q Consensus       183 d~G~y~C~~~~  193 (254)
                      |++.|.|....
T Consensus        89 DtAvYYCAr~~   99 (124)
T d1zvya1          89 DTAIYTCGATR   99 (124)
T ss_dssp             GCEEEEEEECS
T ss_pred             cceEEEEeecc
Confidence            99999997643

>d1l6xa1 b.1.1.2 (A:237-341) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.99  E-value=1.3e-05  Score=47.90  Aligned_cols=76  Identities=13%  Similarity=0.147  Sum_probs=48.1

Q ss_pred             ecCCCeEEEEEEEeeCCC----CeEEEEECCEecccCCcceEEEcCCCC-ceeeEEEEccCCCCCceeEEEEEEcCCCcc
Q psy7036         124 EDDGKRLLFECRIQADPA----PTVIWSHSGVQVKEDKRHKFSIDKDGH-SYFASLEIIDVTIEDAGKYKVTAKNELGES  198 (254)
Q Consensus       124 ~~~g~~~~l~C~~~~~~~----~~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~  198 (254)
                      ...++.++|.|.+.++.+    ..+.|.+++..+............++. ...+.|.|..-.......|+|.+.+.....
T Consensus        15 ~~~~~~~~L~C~~~gf~P~~~~v~~~W~~~~~~~~~~~~~~~~~~~~gtys~~S~L~v~~~~W~~g~~ytC~V~H~~l~~   94 (105)
T d1l6xa1          15 LMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPA   94 (105)
T ss_dssp             HCTTSCCEEEEEEEEECSSSCCCEEEEEETTEEECCCEECCCEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECTTSSS
T ss_pred             hccCCceEEEEEEEEEeCCCCeEEEEEeeCCeECCCcEECCcEECCCCcEEEEEEEEEcHHHcCCCCEEEEEEEeCCCCC
Confidence            335678899999988533    467899999877544322233333332 344566666544444558999999876544


Q ss_pred             e
Q psy7036         199 N  199 (254)
Q Consensus       199 ~  199 (254)
                      .
T Consensus        95 p   95 (105)
T d1l6xa1          95 P   95 (105)
T ss_dssp             C
T ss_pred             C
Confidence            3

>d1lo4h1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]

Probab=97.99  E-value=1.7e-05  Score=47.49  Aligned_cols=71  Identities=15%  Similarity=0.313  Sum_probs=45.5

Q ss_pred             eeecCCCeEEEEEEEeeCCCC--eEEEEECC--Ee------cc--------cCCcceEEEcCCCCceeeEEEEccCCCCC
Q psy7036         122 RQEDDGKRLLFECRIQADPAP--TVIWSHSG--VQ------VK--------EDKRHKFSIDKDGHSYFASLEIIDVTIED  183 (254)
Q Consensus       122 ~~~~~g~~~~l~C~~~~~~~~--~~~W~~~~--~~------~~--------~~~~~~~~~~~~~~~~~~~l~i~~~~~~d  183 (254)
                      ..+.+|+.+.|.|.+.|+...  .+.|+|..  +.      +.        ..-..++.+..+.......|.|.+++.+|
T Consensus        10 ~~vkPG~Sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwl~~i~~~g~t~y~~s~kgR~tiSrD~s~nt~~L~i~~l~~eD   89 (118)
T d1lo4h1          10 DLVKPGGSLTLSCEASGFTLRTYGMSWVRQTPQMRLEWVASISYGGLLYFSDSVKGRFTISRDIVRNILTLQMSRLRSED   89 (118)
T ss_dssp             CEECTTCCEEEEEEEESSCTTTSEEEEEEECTTCCEEEEEEECTTCCEEECTTTBTTBEEEEETTTTEEEEEECSCCGGG
T ss_pred             ceECCCCCeEEEEEECCCcccCCCcccccCCCCcceeeeeecccccchhhccccceeEEEeccccceeeeeccccccCCc
Confidence            456789999999999986533  57888731  11      11        11111233333332333479999999999


Q ss_pred             ceeEEEEEE
Q psy7036         184 AGKYKVTAK  192 (254)
Q Consensus       184 ~G~y~C~~~  192 (254)
                      .+.|.|.-.
T Consensus        90 tA~YyCAr~   98 (118)
T d1lo4h1          90 TAIYYCARG   98 (118)
T ss_dssp             CEEEEEEEE
T ss_pred             ceEEEeccc
Confidence            999999754

>d1rzfh1 b.1.1.1 (H:2-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.98  E-value=5.2e-05  Score=46.35  Aligned_cols=71  Identities=15%  Similarity=0.268  Sum_probs=45.5

Q ss_pred             ceeecCCCeEEEEEEEeeCC--CCceEEEeC--CEE------ee---------e--CCcceEEEeecCCcceEEEEEEec
Q psy7036          17 LRQEDEGNRLIFECQLLCNP--KPDIVWFRG--ETQ------LS---------E--DTRTVMKTTPIGTNKYLVALELDD   75 (254)
Q Consensus        17 ~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~--~~~------~~---------~--~~~~~~~~~~~~~~~~~~~l~i~~   75 (254)
                      ...+.+|+++.|+|.+.|..  ...+.|+|.  |+-      +.         .  ..++.+..  +. ......|.+.+
T Consensus         8 ~~~vkPg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgR~tis~--D~-s~~t~~L~~~~   84 (133)
T d1rzfh1           8 AEVNKPGSSVKVSCQASGATLNSHAFSWVRQAPGQGLEWMAGIIPIFGSSHYAQKFRGRVTISA--DE-STRTVYLHLRG   84 (133)
T ss_dssp             CEEECTTCCEEEEEEESSSCSTTEEEEEEEECTTCCEEEEEEEEGGGTEEEECGGGTTTEEEEE--ET-TTTEEEEEECS
T ss_pred             CceECCCCCEEEEEEEcCCCccCCCCccceECCCCceEEEeecCCccccccccccccccEEEEe--cc-CcceeEEeecc
Confidence            45689999999999998753  345788872  211      11         1  12222222  21 12233689999


Q ss_pred             cCCCCCeEEEEEEEc
Q psy7036          76 VIETDAGLYKVKAKN   90 (254)
Q Consensus        76 ~~~~d~G~Y~C~~~~   90 (254)
                      ++.+|++.|.|....
T Consensus        85 L~~eDtA~YYCAr~~   99 (133)
T d1rzfh1          85 LRSDDTAVYYCASNS   99 (133)
T ss_dssp             CCGGGCEEEEEEEEE
T ss_pred             CCCCCCEEEEeeecc
Confidence            999999999996653

>d1mjuh2 b.1.1.2 (H:114-230) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.98  E-value=5.9e-06  Score=49.12  Aligned_cols=74  Identities=9%  Similarity=0.164  Sum_probs=44.2

Q ss_pred             CCCeEEEEEEEeeCCC--CeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcceEE
Q psy7036         126 DGKRLLFECRIQADPA--PTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNAT  201 (254)
Q Consensus       126 ~g~~~~l~C~~~~~~~--~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~  201 (254)
                      .++.+.|.|.+.++.+  ..|.|.+++........ .....++.+...+.|.|..-... .+.|+|.+.+..+.....
T Consensus        19 ~~~~~~l~Cl~~gf~P~~i~v~W~~~~~~~~~~~~-~~~~~~g~ys~~S~L~v~~~~w~-~~~ytC~V~H~~~~~~v~   94 (102)
T d1mjuh2          19 SGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTF-PAVLQSDLYTLSSSVTVTSSTWP-SQSITCNVAHPASSTKVD   94 (102)
T ss_dssp             ---CEEEEEEEEEEBSSCCEEEEGGGTBCTTEEEC-CCEEETTEEEEEEEEEECTTTTT-TSCCEEEEEEGGGTEEEE
T ss_pred             CCCcEEEEEEEeeeeCCCeEEEECcCCccCCeEec-ccccCCCCEEEEEEEEEehhHcC-CceEEEEEEECCCCEEEE
Confidence            4678999999998643  36999777643221111 11122333345577888776653 468999999876544433

>d1i3ua_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=97.98  E-value=3e-05  Score=47.32  Aligned_cols=72  Identities=21%  Similarity=0.326  Sum_probs=45.3

Q ss_pred             ceeecCCCeEEEEEEEeeCC--CCceEEEeC--CE---Ee---e--------------eCCcceEEEeecCCcceEEEEE
Q psy7036          17 LRQEDEGNRLIFECQLLCNP--KPDIVWFRG--ET---QL---S--------------EDTRTVMKTTPIGTNKYLVALE   72 (254)
Q Consensus        17 ~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~--~~---~~---~--------------~~~~~~~~~~~~~~~~~~~~l~   72 (254)
                      ...+.+|++++|+|.+.|..  .-.+.|+|.  |+   -+   .              ..-+.++....+. ......|+
T Consensus         9 ~~lvkpg~sl~LsC~~SG~~~s~y~~~W~RQ~PGkglewl~~I~~~~~~~~~~~~~y~~~~kgR~tis~d~-s~~~~~L~   87 (127)
T d1i3ua_           9 GGLVQAGDSLKLSCEASGDSIGTYVIGWFRQAPGKERIYLATIGRNLVGPSDFYTRYADSVKGRFAVSRDN-AKNTVNLQ   87 (127)
T ss_dssp             CEECCTTCCEEEEEEEESSCGGGSEEEEEEECTTSCCEEEEEEEEEESSSSCEEEEECTTTBTTEEEEEEG-GGTEEEEE
T ss_pred             CceECCCCCeEEEEEEcCCCCCCCceEeeeeCCccceeEEEEEccccccCCCCcceechhhccceeEeccC-CceEEEEe
Confidence            34678999999999998743  456889973  11   11   1              0001122222211 12233699


Q ss_pred             EeccCCCCCeEEEEEEE
Q psy7036          73 LDDVIETDAGLYKVKAK   89 (254)
Q Consensus        73 i~~~~~~d~G~Y~C~~~   89 (254)
                      |.+++.+|++.|.|...
T Consensus        88 i~~l~~eDtAvYYCAr~  104 (127)
T d1i3ua_          88 MNSLKPEDTAVYYCAAK  104 (127)
T ss_dssp             ECSCCGGGCEEEEEEEE
T ss_pred             eecccccceeEEEEEEE
Confidence            99999999999999865

>d1olla2 b.1.1.4 (A:96-188) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.97  E-value=1.4e-05  Score=46.38  Aligned_cols=61  Identities=16%  Similarity=0.247  Sum_probs=43.0

Q ss_pred             eecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEE
Q psy7036         123 QEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAK  192 (254)
Q Consensus       123 ~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~  192 (254)
                      .+..|++++|.|... .....+.|+|+|.....    .. ....   ..+.+.|.+++..|+|.|+|...
T Consensus        14 ~V~~G~~VTL~C~~~-~~~~~f~L~Keg~~~~~----~~-~~~~---~~a~F~i~~v~~~~~G~Y~C~~~   74 (93)
T d1olla2          14 EVISGEKVTFYCRLD-TATSMFLLLKEGRSSHV----QR-GYGK---VQAEFPLGPVTTAHRGTYRCFGS   74 (93)
T ss_dssp             EEETTCEEEEEEECS-SSCSEEEEEEESSSCEE----EE-EECS---SEEEEEEEECCGGGCEEEEEECE
T ss_pred             cccCCCcEEEEECCC-CCCCEEEEEECCCccce----ee-cCCC---ceeEEEecccChhcCceEEEEeE
Confidence            467899999999963 34567999998753211    11 1111   23579999999999999999743

>d2nxyd1 b.1.1.1 (D:3001-3128) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.97  E-value=1.7e-05  Score=48.24  Aligned_cols=73  Identities=14%  Similarity=0.273  Sum_probs=47.1

Q ss_pred             eeeecCCCeEEEEEEEeeCCCC--eEEEEECC--Ee------c---------ccCCcceEEEcCCCCceeeEEEEccCCC
Q psy7036         121 IRQEDDGKRLLFECRIQADPAP--TVIWSHSG--VQ------V---------KEDKRHKFSIDKDGHSYFASLEIIDVTI  181 (254)
Q Consensus       121 ~~~~~~g~~~~l~C~~~~~~~~--~~~W~~~~--~~------~---------~~~~~~~~~~~~~~~~~~~~l~i~~~~~  181 (254)
                      ...+.+|+++.|.|.+.|+...  .+.|+|..  +.      +         ...-+.++.+..+.......|.|.+++.
T Consensus         9 ~~~~kpg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewig~i~~~~~~~~ya~s~kgR~tiS~D~s~~t~yL~~~sL~~   88 (128)
T d2nxyd1           9 AEVKKPGSSVKVSCKASGDTFIRYSFTWVRQAPGQGLEWMGRIITILDVAHYAPHLQGRVTITADKSTSTVYLELRNLRS   88 (128)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGEEEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CceECCCCCEEEEEEEcCCCccCCCcccceeCCCcceeeeeecCCcccccccccceeEEEEEeecCCCceEEeeeeeccc
Confidence            3457789999999999987543  36777631  10      1         1111223333333333345799999999


Q ss_pred             CCceeEEEEEEc
Q psy7036         182 EDAGKYKVTAKN  193 (254)
Q Consensus       182 ~d~G~y~C~~~~  193 (254)
                      +|.+.|.|....
T Consensus        89 eDTA~YYCAr~~  100 (128)
T d2nxyd1          89 DDTAVYFCAGVY  100 (128)
T ss_dssp             GGCEEEEEEEEE
T ss_pred             cCceEEEEeEEe
Confidence            999999998654

>d1rihh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.96  E-value=1.5e-05  Score=48.57  Aligned_cols=74  Identities=16%  Similarity=0.236  Sum_probs=46.0

Q ss_pred             CeeeecCCCeEEEEEEEeeCCCC--eEEEEEC--CEe------cc---------cCCcceEEEcCCCCceeeEEEEccCC
Q psy7036         120 SIRQEDDGKRLLFECRIQADPAP--TVIWSHS--GVQ------VK---------EDKRHKFSIDKDGHSYFASLEIIDVT  180 (254)
Q Consensus       120 ~~~~~~~g~~~~l~C~~~~~~~~--~~~W~~~--~~~------~~---------~~~~~~~~~~~~~~~~~~~l~i~~~~  180 (254)
                      ....+.+|++++|.|.+.|+...  .+.|+|.  |+.      +.         ..-..++....+.......|.|.+++
T Consensus         8 g~~l~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~pGkglewlg~i~~~~~~~~ya~s~~~R~tis~D~s~n~vyL~l~sL~   87 (125)
T d1rihh1           8 GNELAKPGASMKMSCRASGYSFTSYWIHWLKQRPDQGLEWIGYIDPATAYTESNQKFKDKAILTADRSSNTAFMYLNSLT   87 (125)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCceECCCCCEEEEEEEccCCCCCCCCccccCCCCccceeeeecCCccccccccccceeeeEEecccCcceEeeeeeccC
Confidence            34567789999999999876432  4777763  111      11         11111222322222233479999999


Q ss_pred             CCCceeEEEEEEc
Q psy7036         181 IEDAGKYKVTAKN  193 (254)
Q Consensus       181 ~~d~G~y~C~~~~  193 (254)
                      .+|++.|.|....
T Consensus        88 ~eDtAvYYCAR~~  100 (125)
T d1rihh1          88 SEDSAVYYCARES  100 (125)
T ss_dssp             GGGCEEEEEEEEC
T ss_pred             cccceEEEEeeeC
Confidence            9999999998543

>d1dlfh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=97.95  E-value=4.1e-05  Score=45.94  Aligned_cols=72  Identities=18%  Similarity=0.297  Sum_probs=45.6

Q ss_pred             eeecCCCeEEEEEEEeeCCC--CeEEEEEC--CEe------cc-----------cCCcceEEEcCCCCceeeEEEEccCC
Q psy7036         122 RQEDDGKRLLFECRIQADPA--PTVIWSHS--GVQ------VK-----------EDKRHKFSIDKDGHSYFASLEIIDVT  180 (254)
Q Consensus       122 ~~~~~g~~~~l~C~~~~~~~--~~~~W~~~--~~~------~~-----------~~~~~~~~~~~~~~~~~~~l~i~~~~  180 (254)
                      ..+.+|++++|.|.+.|+..  -.+.|+|.  |+.      +.           ..-..++....+.......|.|.+++
T Consensus        10 ~~vkpG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwv~~i~~~~~~~~~~ya~s~kgRftiS~D~s~n~~~L~~~~L~   89 (120)
T d1dlfh_          10 GLVQPGGSMKLSCATSGFTFSDAWMDWVRQSPEKGLEWVAEIRNKANNHATYYAESVKGRFTISRDDSKRRVYLQMNTLR   89 (120)
T ss_dssp             CEECTTCCEEEEEEEESSCTTTCEEEEEEEETTTEEEEEEEECCGGGTTCEEECTTTTTTEEEEEETTTTEEEEEECSCC
T ss_pred             ceECCCCCeEEEEEECCccCcCCceEeeeeCCCcceeeeeeccccccccceeechhceecceeecccccceeccceeecc
Confidence            35678999999999987643  35788873  211      11           01111333333322233479999999


Q ss_pred             CCCceeEEEEEEc
Q psy7036         181 IEDAGKYKVTAKN  193 (254)
Q Consensus       181 ~~d~G~y~C~~~~  193 (254)
                      .+|++.|.|....
T Consensus        90 ~eDtAvYYCA~~~  102 (120)
T d1dlfh_          90 AEDTGIYYCTGIY  102 (120)
T ss_dssp             GGGCEEEEEEEEB
T ss_pred             CCCceEEEeeEec
Confidence            9999999997543

>d2mhaa1 b.1.1.2 (A:182-270) Class I MHC, alpha-3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC, alpha-3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.95  E-value=2.7e-05  Score=44.86  Aligned_cols=67  Identities=15%  Similarity=0.208  Sum_probs=43.1

Q ss_pred             CCCeEEEEEEEeeCCCC--eEEEEECCEecccCCcc-eEEEcCCCC-ceeeEEEEccCCCCCceeEEEEEEcCC
Q psy7036         126 DGKRLLFECRIQADPAP--TVIWSHSGVQVKEDKRH-KFSIDKDGH-SYFASLEIIDVTIEDAGKYKVTAKNEL  195 (254)
Q Consensus       126 ~g~~~~l~C~~~~~~~~--~~~W~~~~~~~~~~~~~-~~~~~~~~~-~~~~~l~i~~~~~~d~G~y~C~~~~~~  195 (254)
                      .++.++|.|.+.++.+.  .+.|.++|..+...... ......++. ...+.|.+..   .+...|+|.+.+..
T Consensus        14 ~~~~~~L~C~a~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~---~~~~~ytC~V~H~~   84 (89)
T d2mhaa1          14 PEDKVTLRCWALGFYPADITLTWQLNGEELIQDMELVETRPAGDGTFQKWASVVVPL---GKEQYYTCHVYHQG   84 (89)
T ss_dssp             CSSEEEEEEEEESCBSSCCEEEEEETTEEECTTCEECCCEECSSSCEEEEEEEEEES---STTTTCEEEEECSS
T ss_pred             CCCCEEEEEEEEeEECCCCEEEEEECCEEeCCCEEECcEecCCCCcEEEEEEEEecC---cCCCEEEEEEEECC
Confidence            45689999999997543  58999999987643321 222333332 3345566653   23347999998764

>d2fx7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.95  E-value=2e-05  Score=47.80  Aligned_cols=73  Identities=18%  Similarity=0.287  Sum_probs=46.3

Q ss_pred             eeeecCCCeEEEEEEEeeCCC--CeEEEEEC--CEe------cc---------cCCcceEEEcCCCCceeeEEEEccCCC
Q psy7036         121 IRQEDDGKRLLFECRIQADPA--PTVIWSHS--GVQ------VK---------EDKRHKFSIDKDGHSYFASLEIIDVTI  181 (254)
Q Consensus       121 ~~~~~~g~~~~l~C~~~~~~~--~~~~W~~~--~~~------~~---------~~~~~~~~~~~~~~~~~~~l~i~~~~~  181 (254)
                      ...+.+|+.+.|.|.+.|+..  -.+.|+|.  |+.      +.         ..-..++....+.......|.|.+++.
T Consensus         9 ~~~~kPg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglew~g~i~~~~~~~~y~~s~kgR~tiSrD~s~~t~yL~~~sL~~   88 (127)
T d2fx7h1           9 AEVKRPGSSVTVSCKASGGSFSTYALSWVRQAPGRGLEWMGGVIPLLTITNYAPRFQGRITITADRSTSTAYLELNSLRP   88 (127)
T ss_dssp             CEEECTTCCEEEEEEEESSCSTTSCEEEEEECTTCCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CceECCCCCEEEEEEEcCCCCCCCCeEEEEeCCCCcceeeeccCcccccccccceeeeeEEEeccCccceEeeeecccCc
Confidence            345678999999999988643  24778763  111      11         111123333333333334799999999


Q ss_pred             CCceeEEEEEEc
Q psy7036         182 EDAGKYKVTAKN  193 (254)
Q Consensus       182 ~d~G~y~C~~~~  193 (254)
                      +|.+.|.|.-..
T Consensus        89 eDTavYYCAR~~  100 (127)
T d2fx7h1          89 EDTAVYYCAREG  100 (127)
T ss_dssp             GGCEEEEEEEEE
T ss_pred             ccceEEEEeecc
Confidence            999999997654

>d1j05b_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.95  E-value=2.6e-05  Score=47.17  Aligned_cols=73  Identities=18%  Similarity=0.223  Sum_probs=45.5

Q ss_pred             CeeeecCCCeEEEEEEEeeCCC--CeEEEEEC--CEec------ccC---------CcceEEEcCCCCceeeEEEEccCC
Q psy7036         120 SIRQEDDGKRLLFECRIQADPA--PTVIWSHS--GVQV------KED---------KRHKFSIDKDGHSYFASLEIIDVT  180 (254)
Q Consensus       120 ~~~~~~~g~~~~l~C~~~~~~~--~~~~W~~~--~~~~------~~~---------~~~~~~~~~~~~~~~~~l~i~~~~  180 (254)
                      ....+.+|+.++|.|.+.|+.-  -.+.|+|.  |+.+      ...         ...++....+.......|.|.+++
T Consensus         8 g~~~~kpG~sv~LsC~~SG~~~s~~~~~W~RQ~PGkgle~l~~i~~~~~~~~y~~~~kgR~tis~D~s~~t~~L~i~~L~   87 (121)
T d1j05b_           8 GAELVEPGASVKLSCTASGFNIKDTYMHWVKQRPEQGLEWIGRIDPANGNSKYVPKFQGKATITADTSSNTAYLQLTSLT   87 (121)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTCCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCC
T ss_pred             CCceECCCCCEEEEEEEecCCCCCCCcceeeECCCCccccccccCCcCCccccchhhccceEEEeecCCceeeecccccC
Confidence            3456788999999999987542  35788873  2111      100         011222222222223469999999


Q ss_pred             CCCceeEEEEEE
Q psy7036         181 IEDAGKYKVTAK  192 (254)
Q Consensus       181 ~~d~G~y~C~~~  192 (254)
                      .+|++.|.|...
T Consensus        88 ~eDtAvYYCAr~   99 (121)
T d1j05b_          88 SEDTAVYYCAPF   99 (121)
T ss_dssp             GGGCEEEEEEEE
T ss_pred             cCcceEEEeEee
Confidence            999999999754

>d1yedb1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.95  E-value=1.9e-05  Score=47.59  Aligned_cols=73  Identities=16%  Similarity=0.203  Sum_probs=46.4

Q ss_pred             CeeeecCCCeEEEEEEEeeCCCC--eEEEEECC--Ee------cc---------cCCcceEEEcCCCCceeeEEEEccCC
Q psy7036         120 SIRQEDDGKRLLFECRIQADPAP--TVIWSHSG--VQ------VK---------EDKRHKFSIDKDGHSYFASLEIIDVT  180 (254)
Q Consensus       120 ~~~~~~~g~~~~l~C~~~~~~~~--~~~W~~~~--~~------~~---------~~~~~~~~~~~~~~~~~~~l~i~~~~  180 (254)
                      ....+.+|+++.|.|.+.|+...  .+.|+|..  +.      +.         ..-..++.+..+.......|.|.+++
T Consensus         8 G~~~~kPG~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwv~~i~~~~~~~~y~~s~kgR~tiS~D~s~~t~~L~~~sL~   87 (124)
T d1yedb1           8 GPELVRPGTSVKLSCKTSGYIFTSYWIHWLKQSSGQGLEWIARIYPGTGGTYYNEKFKGKATLTADKSSSTAYMQLSSLK   87 (124)
T ss_dssp             CCEEECTTCEEEEEEEEESSCGGGSCEEEEEECSSSCCEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEEESCC
T ss_pred             CCceECCCCCEEEEEEEcCCCccCCccccceECCCCceeeeeeccccccccccccccceeEEEEccCCcceEEecccccC
Confidence            34557789999999999986432  47787731  11      11         11112333333333334579999999


Q ss_pred             CCCceeEEEEEE
Q psy7036         181 IEDAGKYKVTAK  192 (254)
Q Consensus       181 ~~d~G~y~C~~~  192 (254)
                      .+|.+.|.|...
T Consensus        88 ~eDTAvYYCAR~   99 (124)
T d1yedb1          88 SEDSAVYFCTRW   99 (124)
T ss_dssp             GGGCEEEEEEEC
T ss_pred             CCcceEEEeccc
Confidence            999999999743

>d1fn4b1 b.1.1.1 (B:1-106) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.95  E-value=6e-06  Score=49.49  Aligned_cols=70  Identities=16%  Similarity=0.231  Sum_probs=45.4

Q ss_pred             eeecCCCeEEEEEEEeeCC--CCceEEEeC--CEE------eee----------CCcceEEEeecCCcceEEEEEEeccC
Q psy7036          18 RQEDEGNRLIFECQLLCNP--KPDIVWFRG--ETQ------LSE----------DTRTVMKTTPIGTNKYLVALELDDVI   77 (254)
Q Consensus        18 ~~v~~g~~v~l~C~~~~~~--~~~v~W~~~--~~~------~~~----------~~~~~~~~~~~~~~~~~~~l~i~~~~   77 (254)
                      ..+++|++++|+|.+.|..  ...+.|+|.  |+.      +..          ..++.+.....   .....|.+.+++
T Consensus        10 ~~vkPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwv~~i~~~g~t~y~~~~kgR~tis~D~s---~~tv~L~~~~L~   86 (116)
T d1fn4b1          10 GLVRPSETLSLTCTVSGFSLTSFSVSWVRHPSGKGPEWMGRMWYDGYTAYNSALKSRLSISRDTS---KNQVFLKMNSLQ   86 (116)
T ss_dssp             SBCCTTSEECCEEECCSSCTTSSEEEEEEEETTSCCEEEEEECSSSCEEECHHHHTTBCCEEEGG---GTEEECCEESCC
T ss_pred             ceECCCCCeEEEEEEeCcccccCccceeeECCCCceeeeeeccccccccccccccceEEEccccc---cchhhcceeccC
Confidence            3578999999999998743  456889872  211      111          12233322221   123368999999


Q ss_pred             CCCCeEEEEEEEc
Q psy7036          78 ETDAGLYKVKAKN   90 (254)
Q Consensus        78 ~~d~G~Y~C~~~~   90 (254)
                      .+|++.|.|....
T Consensus        87 ~eDTAvYyCAr~~   99 (116)
T d1fn4b1          87 TDDTGTYYCTRDL   99 (116)
T ss_dssp             CCCCEEEEEEEEC
T ss_pred             CCCCEEEEEEeec
Confidence            9999999997543

>d1dfbh1 b.1.1.1 (H:1-126) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 3 [TaxId: 9606]

Probab=97.94  E-value=4.2e-05  Score=46.35  Aligned_cols=73  Identities=15%  Similarity=0.266  Sum_probs=46.5

Q ss_pred             eeeecCCCeEEEEEEEeeCCCC--eEEEEECC--Ee------cc---------cCCcceEEEcCCCCceeeEEEEccCCC
Q psy7036         121 IRQEDDGKRLLFECRIQADPAP--TVIWSHSG--VQ------VK---------EDKRHKFSIDKDGHSYFASLEIIDVTI  181 (254)
Q Consensus       121 ~~~~~~g~~~~l~C~~~~~~~~--~~~W~~~~--~~------~~---------~~~~~~~~~~~~~~~~~~~l~i~~~~~  181 (254)
                      ...+.+|+.+.|.|.+.|+...  .+.|+|..  +.      +.         ..-..++.+..+.......|.|.+++.
T Consensus         9 ~~~vkPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgR~tiS~D~s~nt~~L~~~~L~~   88 (126)
T d1dfbh1           9 GGLVQPGRSLRLSCAASGFTFNDYAMHWVRQAPGKGLEWVSGISWDSSSIGYADSVKGRFTISRDNAKNSLYLQMNSLRA   88 (126)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSSEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CceECCCCCeEEEEEECCccccCCcceeceeCCCccceeeeecCcccccchhccccccceEEeccCCCcEEEeeeeeecc
Confidence            3457789999999999886532  47788731  11      11         111123333333333335799999999


Q ss_pred             CCceeEEEEEEc
Q psy7036         182 EDAGKYKVTAKN  193 (254)
Q Consensus       182 ~d~G~y~C~~~~  193 (254)
                      +|.+.|.|....
T Consensus        89 eDtavYYCAr~~  100 (126)
T d1dfbh1          89 EDMALYYCVKGR  100 (126)
T ss_dssp             GGCEEEEEEEEE
T ss_pred             CcceEEEEEecc
Confidence            999999997543

>d1ad9b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.93  E-value=1.9e-05  Score=47.41  Aligned_cols=72  Identities=14%  Similarity=0.255  Sum_probs=45.9

Q ss_pred             eeeecCCCeEEEEEEEeeCCCC--eEEEEECC--Ee------cc---------cCCcceEEEcCCCCceeeEEEEccCCC
Q psy7036         121 IRQEDDGKRLLFECRIQADPAP--TVIWSHSG--VQ------VK---------EDKRHKFSIDKDGHSYFASLEIIDVTI  181 (254)
Q Consensus       121 ~~~~~~g~~~~l~C~~~~~~~~--~~~W~~~~--~~------~~---------~~~~~~~~~~~~~~~~~~~l~i~~~~~  181 (254)
                      ...+.+|+++.|.|.+.|+...  .+.|+|..  +.      +.         ..-..++.+..+.......|.|.+++.
T Consensus         9 ~~~vkpg~sl~LsC~vSG~s~~~~~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgRftiS~D~s~nt~~L~m~~L~~   88 (120)
T d1ad9b1           9 AEVKKPGSSVKVSCKASGYTFTDYYINWMRQAPGQGLEWIGWIDPGSGNTKYNEKFKGRATLTVDTSTNTAYMELSSLRS   88 (120)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CceECCCCCEEEEEEEcCCCCcCCccccceECCCccceeeeecCCcccceeeccceeeeEEEEecCcceEEeccccccCC
Confidence            4567789999999999886533  47777631  11      11         111123333333333334799999999


Q ss_pred             CCceeEEEEEE
Q psy7036         182 EDAGKYKVTAK  192 (254)
Q Consensus       182 ~d~G~y~C~~~  192 (254)
                      +|.+.|.|...
T Consensus        89 eDTAvYYCAr~   99 (120)
T d1ad9b1          89 EDTAFYFCARE   99 (120)
T ss_dssp             GGCEEEEEEEE
T ss_pred             CcceEEEEEEc
Confidence            99999999754

>d1lmka1 b.1.1.1 (A:2-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.93  E-value=2.4e-05  Score=47.41  Aligned_cols=72  Identities=18%  Similarity=0.294  Sum_probs=45.8

Q ss_pred             CeeeecCCCeEEEEEEEeeCCCC--eEEEEEC--CEe------cc---------cCCcceEEEcCCCCceeeEEEEccCC
Q psy7036         120 SIRQEDDGKRLLFECRIQADPAP--TVIWSHS--GVQ------VK---------EDKRHKFSIDKDGHSYFASLEIIDVT  180 (254)
Q Consensus       120 ~~~~~~~g~~~~l~C~~~~~~~~--~~~W~~~--~~~------~~---------~~~~~~~~~~~~~~~~~~~l~i~~~~  180 (254)
                      ....+.+|+++.|.|.+.|+...  .+.|+|.  |+.      +.         ..-+.++.+..+.......|.|.+++
T Consensus         7 G~~~~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgRfTiS~D~s~nt~yL~m~~L~   86 (126)
T d1lmka1           7 GTELMKPGRSLKISCKTTGYIFSNYWIEWVKQRPGHGLEWIGKILPGGGSNTYNDKFKGKATFTADTSSNIAYMQLSSLT   86 (126)
T ss_dssp             CCEEECTTCCEEEEEEEESSCTTTEEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCceECCCCCeEEEEEEccCCCCCCCCcceeeCCCccceeeeecCccccchhhhhhhccceEEEecCCccEEEeeecccC
Confidence            34567789999999999986543  4778773  111      11         11112333332322233479999999


Q ss_pred             CCCceeEEEEE
Q psy7036         181 IEDAGKYKVTA  191 (254)
Q Consensus       181 ~~d~G~y~C~~  191 (254)
                      .+|.+.|.|..
T Consensus        87 ~eDTAvYYCAr   97 (126)
T d1lmka1          87 SEDSAVYYCAR   97 (126)
T ss_dssp             GGGCEEEEEEE
T ss_pred             CCcceEEEEee
Confidence            99999999964

>d1nfdf1 b.1.1.1 (F:1-114) Immunoglobulin heavy chain variable domain, VH {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.93  E-value=3.2e-05  Score=46.42  Aligned_cols=71  Identities=13%  Similarity=0.184  Sum_probs=45.4

Q ss_pred             CceeecCCCeEEEEEEEeeCC--CCceEEEeC--CEE------eee-------------CCcceEEEeecCCcceEEEEE
Q psy7036          16 QLRQEDEGNRLIFECQLLCNP--KPDIVWFRG--ETQ------LSE-------------DTRTVMKTTPIGTNKYLVALE   72 (254)
Q Consensus        16 ~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~--~~~------~~~-------------~~~~~~~~~~~~~~~~~~~l~   72 (254)
                      ....+.+|++++|+|.+.|..  ...+.|+|.  |+.      +..             ..++.+..  +. ..-...|.
T Consensus         8 G~~~vkPG~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwv~~i~~~~~~~~t~Ya~s~kgR~tiSr--D~-s~nt~yL~   84 (121)
T d1nfdf1           8 GGDLVQPGSSLKVSCAASGFTFSDFWMYWVRQAPGKGLEWVGRIKNIPNNYATEYADSVRGRFTISR--DD-SRNSIYLQ   84 (121)
T ss_dssp             CCEEECTTCEEEEEEEEESSCGGGEEEEEEEECTTSCEEEEEEECCTTTTTCEEECGGGTTTBCCEE--CT-TTSEEEEE
T ss_pred             CCceECCCCCEEEEEEEcCCCCcCCceeeceecCCccceeeeeecccccccccccchheeeeeEEcc--cc-ccceeece
Confidence            345789999999999998854  345788872  211      110             11222221  11 12233699


Q ss_pred             EeccCCCCCeEEEEEEE
Q psy7036          73 LDDVIETDAGLYKVKAK   89 (254)
Q Consensus        73 i~~~~~~d~G~Y~C~~~   89 (254)
                      +.+++.+|.+.|.|...
T Consensus        85 ~~~L~~eDTAvYYCAr~  101 (121)
T d1nfdf1          85 MNRLRVDDTAIYYCTRA  101 (121)
T ss_dssp             EESCCGGGCEECEEEEE
T ss_pred             ecccCCCcceEEEEecc
Confidence            99999999999999754

>d1c5ch2 b.1.1.2 (H:114-230) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.93  E-value=5.4e-06  Score=49.41  Aligned_cols=73  Identities=11%  Similarity=0.220  Sum_probs=45.0

Q ss_pred             CCeEEEEEEEeeCCC--CeEEEEECCEecccCCcceEEEcCCC-CceeeEEEEccCCCCCceeEEEEEEcCCCcceEE
Q psy7036         127 GKRLLFECRIQADPA--PTVIWSHSGVQVKEDKRHKFSIDKDG-HSYFASLEIIDVTIEDAGKYKVTAKNELGESNAT  201 (254)
Q Consensus       127 g~~~~l~C~~~~~~~--~~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~  201 (254)
                      +..+.|.|.+.++.+  ..|+|.+++....... .......++ +...+.|.|..-... ...|+|.+.+..+.....
T Consensus        20 ~~~~tl~Cl~~~f~P~~i~v~W~~~~~~~~~~t-~~~~~~~~gtys~~S~L~v~~~~w~-~~~ytC~V~H~~~~~~v~   95 (103)
T d1c5ch2          20 GGTAALGCLVKDYFPEPVTVSWNSGALTSGVHT-FPAVLQSSGLYSLSSVVTVPSSSLG-TQTYICNVNHKPSNTKVD   95 (103)
T ss_dssp             TTEEEEEEEEEEEBSSCCEEEEGGGTBCTTEEE-CCCEECTTSCEEEEEEEEEEGGGGG-TCCCEEEEEEGGGTEEEE
T ss_pred             CCeEEEEEEEEeEeCCCeEEEECcCCCCCCEEE-CCCeECCCCCEEEEEEEEECccccC-CCeEEEEEEeCCCCEEEE
Confidence            567999999988643  3699987775432111 112222333 345567777755443 457999999976655433

>d1bz7b1 b.1.1.1 (B:1-122) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=97.93  E-value=4e-05  Score=46.28  Aligned_cols=72  Identities=15%  Similarity=0.261  Sum_probs=45.7

Q ss_pred             eeecCCCeEEEEEEEeeCCCC--eEEEEECC--Ee------cc---------cCCcceEEEcCCCCceeeEEEEccCCCC
Q psy7036         122 RQEDDGKRLLFECRIQADPAP--TVIWSHSG--VQ------VK---------EDKRHKFSIDKDGHSYFASLEIIDVTIE  182 (254)
Q Consensus       122 ~~~~~g~~~~l~C~~~~~~~~--~~~W~~~~--~~------~~---------~~~~~~~~~~~~~~~~~~~l~i~~~~~~  182 (254)
                      ..+.+|++++|.|.+.|+...  .+.|+|..  +.      +.         ..-+.++.+..+.......|.|.+++.+
T Consensus        10 ~lvkPg~sl~LsC~~SG~s~s~y~~~WvRQ~PGkglewl~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~yL~m~sL~~e   89 (122)
T d1bz7b1          10 GLVQPGGSRKLSCAASGFTFSNFGMHWVRQAPEKGLEWVAYISSGGSSINYADTVKGRFTISRDNPKNTLFLQMTSLRSE   89 (122)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEECSSSCEEEEEEECSSSSCEEECGGGTTTEEEEEEGGGTEEEEEECSCCGG
T ss_pred             ceECCCCCeEEEEEEcCCCCcCCceEccccCCCcceeeeeecCcccccccccceeeeeEEEeccCCccEeEeeeeeeccc
Confidence            456789999999999986432  47888731  11      11         1111233333333223347999999999


Q ss_pred             CceeEEEEEEc
Q psy7036         183 DAGKYKVTAKN  193 (254)
Q Consensus       183 d~G~y~C~~~~  193 (254)
                      |.+.|.|....
T Consensus        90 DTAvYYCAr~~  100 (122)
T d1bz7b1          90 DTAIYYCTRGG  100 (122)
T ss_dssp             GCEEEEEEEEC
T ss_pred             CceEEEeecCC
Confidence            99999997543

>d2b1hh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.92  E-value=1.8e-05  Score=47.84  Aligned_cols=72  Identities=14%  Similarity=0.211  Sum_probs=45.4

Q ss_pred             eeeecCCCeEEEEEEEeeCCCC--eEEEEEC--CEe------cc---------cCCcceEEEcCCCCceeeEEEEccCCC
Q psy7036         121 IRQEDDGKRLLFECRIQADPAP--TVIWSHS--GVQ------VK---------EDKRHKFSIDKDGHSYFASLEIIDVTI  181 (254)
Q Consensus       121 ~~~~~~g~~~~l~C~~~~~~~~--~~~W~~~--~~~------~~---------~~~~~~~~~~~~~~~~~~~l~i~~~~~  181 (254)
                      ...+.+|+.+.|.|.+.|+...  .+.|+|.  |+.      +.         ..-..++....+.......|.|.+++.
T Consensus         9 ~~~~kpg~sl~LsC~~SG~~~~~~~~~W~RQ~PGkglewig~i~~~~~~~~ya~s~kgR~tiSrD~s~~t~yL~~~~L~~   88 (124)
T d2b1hh1           9 AEVKKSGESLKISCQTSGYSFSDYWIGWVRQMPGKGLEWMGIFYPGDSDSRYSPSFEGQVTMSADRSTNTAHLQWSSLKP   88 (124)
T ss_dssp             CEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECTTTTTTCEEEEETTTTEEEEEESSCCG
T ss_pred             CceECCCCCEEEEEEEcCCCCcCCcCccceeCCCcceeeeeecCcccccccccccceeeEEEeecCCCcEEEEeeecccc
Confidence            4566789999999999986532  4778772  111      11         111122333333333345799999999


Q ss_pred             CCceeEEEEEE
Q psy7036         182 EDAGKYKVTAK  192 (254)
Q Consensus       182 ~d~G~y~C~~~  192 (254)
                      +|.+.|.|...
T Consensus        89 eDTA~YYCAR~   99 (124)
T d2b1hh1          89 SDTALYYCARL   99 (124)
T ss_dssp             GGCEEEEEEEE
T ss_pred             ccceEEEEeec
Confidence            99999999543

>d1rhhb1 b.1.1.1 (B:3-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.92  E-value=3.5e-05  Score=46.98  Aligned_cols=74  Identities=14%  Similarity=0.266  Sum_probs=47.0

Q ss_pred             CeeeecCCCeEEEEEEEeeCCC--CeEEEEEC--CEe------cc---------cCCcceEEEcCCCCceeeEEEEccCC
Q psy7036         120 SIRQEDDGKRLLFECRIQADPA--PTVIWSHS--GVQ------VK---------EDKRHKFSIDKDGHSYFASLEIIDVT  180 (254)
Q Consensus       120 ~~~~~~~g~~~~l~C~~~~~~~--~~~~W~~~--~~~------~~---------~~~~~~~~~~~~~~~~~~~l~i~~~~  180 (254)
                      ....+.+|+.+.|.|.+.|+..  -.+.|+|.  |+.      +.         ..-..++.+..+.......|.|.+++
T Consensus         7 g~~~~kPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewig~i~~~~g~~~y~~~~kgR~tis~D~s~~tv~L~~~~L~   86 (130)
T d1rhhb1           7 GAEVKKPGSSVQVSCKASGGTFSMYGFNWVRQAPGHGLEWMGGIIPIFGTSNYAQKFRGRVTFTADQATSTAYMELTNLR   86 (130)
T ss_dssp             CCEEECTTCCEEEEEEETTSCCTTCEEEEEEECTTSCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCceECCCCCeEEEEEEeCCCccCCCcceEEeCCccCcEEEeecCCcccccccccceeeeeEEeccCCccEEEEEeeccC
Confidence            3456778999999999987643  34778873  111      11         11111333333333334579999999


Q ss_pred             CCCceeEEEEEEc
Q psy7036         181 IEDAGKYKVTAKN  193 (254)
Q Consensus       181 ~~d~G~y~C~~~~  193 (254)
                      .+|++.|.|....
T Consensus        87 ~eDtAvYyCAr~~   99 (130)
T d1rhhb1          87 SDDTAVYYCARDF   99 (130)
T ss_dssp             GGGCEEEEEEEEC
T ss_pred             CCCcEEEEEEeec
Confidence            9999999997653

>d3c2ah1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 4 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 4 [TaxId: 9606]

Probab=97.92  E-value=5.1e-05  Score=46.34  Aligned_cols=71  Identities=13%  Similarity=0.227  Sum_probs=44.8

Q ss_pred             eeecCCCeEEEEEEEeeCC--CCceEEEeC--CEE------ee-----------eCCcceEEEeecCCcceEEEEEEecc
Q psy7036          18 RQEDEGNRLIFECQLLCNP--KPDIVWFRG--ETQ------LS-----------EDTRTVMKTTPIGTNKYLVALELDDV   76 (254)
Q Consensus        18 ~~v~~g~~v~l~C~~~~~~--~~~v~W~~~--~~~------~~-----------~~~~~~~~~~~~~~~~~~~~l~i~~~   76 (254)
                      ..+++|++++|+|.+.|..  ...+.|+|.  |+.      +.           ..-+.++....+.. .....|.+.++
T Consensus        10 ~~vkpg~sl~LsC~~SG~s~s~~~~~WvRQ~PGkglewv~~i~~~~~~~~~~ya~s~kgR~tiS~D~s-~nt~~Lq~~~L   88 (131)
T d3c2ah1          10 GLVKPGGSLRLTCVASGFTFSDVWLNWVRQAPGKGLEWVGRIKSRTDGGTTDYAASVKGRFTISRDDS-KNTLYLQMNSL   88 (131)
T ss_dssp             CEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECCGGGTCCEEECTTTTTTEEEEEEGG-GTEEEEEECSC
T ss_pred             ceECCCCCeEEEEEECCCCCcCCcccccccCCCccceecccccccccccchhhccceeEEEEEecccc-cceeecceecc
Confidence            4688999999999998743  456788872  211      11           01111222222211 22336999999


Q ss_pred             CCCCCeEEEEEEE
Q psy7036          77 IETDAGLYKVKAK   89 (254)
Q Consensus        77 ~~~d~G~Y~C~~~   89 (254)
                      +.+|++.|.|...
T Consensus        89 ~~eDTAvYYCAR~  101 (131)
T d3c2ah1          89 KTEDTAVYSCTTD  101 (131)
T ss_dssp             CGGGCEEEEEEEE
T ss_pred             ccCCceEEEEecc
Confidence            9999999999754

>d1tjgh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.92  E-value=3.4e-05  Score=47.43  Aligned_cols=72  Identities=15%  Similarity=0.189  Sum_probs=44.9

Q ss_pred             eeecCCCeEEEEEEEeeCCC----CeEEEEECC--Eec------c--------cCCcceEEEcCCCCceeeEEEEccCCC
Q psy7036         122 RQEDDGKRLLFECRIQADPA----PTVIWSHSG--VQV------K--------EDKRHKFSIDKDGHSYFASLEIIDVTI  181 (254)
Q Consensus       122 ~~~~~g~~~~l~C~~~~~~~----~~~~W~~~~--~~~------~--------~~~~~~~~~~~~~~~~~~~l~i~~~~~  181 (254)
                      ..+.+|+.++|.|.+.|+..    .-+.|+|..  +.+      .        ..-+.++....+.......|.|.+++.
T Consensus        10 ~~vkpg~Sl~LsC~~SG~~~s~~~~~~~WyRQ~pG~~le~l~~i~~~~~~~y~~~~k~Rftis~d~s~~~~~L~i~~l~~   89 (132)
T d1tjgh1          10 PLVKPTQTLTLTCSFSGFSLSDFGVGVGWIRQPPGKALEWLAIIYSDDDKRYSPSLNTRLTITKDTSKNQVVLVMTRVSP   89 (132)
T ss_dssp             SEECTTCCEEEEEEEESSCTTSTTCEEEEEEECTTSCCEEEEEEETTSCEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             eeECCCCCeEEEEEEeCCCcCCCCCceEEEEECCCcccEEEEEecCCCccEeeeeeeecceecccccccEEEcccccCCc
Confidence            35678999999999987542    247899731  111      0        001112322222222234799999999


Q ss_pred             CCceeEEEEEEc
Q psy7036         182 EDAGKYKVTAKN  193 (254)
Q Consensus       182 ~d~G~y~C~~~~  193 (254)
                      +|++.|.|....
T Consensus        90 eDtAvYYCAr~~  101 (132)
T d1tjgh1          90 VDTATYFCAHRR  101 (132)
T ss_dssp             GGCEEEEEEEEC
T ss_pred             ccceEEEEEEec
Confidence            999999998653

>d3cx5j1 b.1.1.1 (J:1-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]

Probab=97.91  E-value=7e-05  Score=45.46  Aligned_cols=69  Identities=19%  Similarity=0.219  Sum_probs=44.9

Q ss_pred             eeecCCCeEEEEEEEeeCC---CCceEEEeC--CEEe------eeC----------CcceEEEeecCCcceEEEEEEecc
Q psy7036          18 RQEDEGNRLIFECQLLCNP---KPDIVWFRG--ETQL------SED----------TRTVMKTTPIGTNKYLVALELDDV   76 (254)
Q Consensus        18 ~~v~~g~~v~l~C~~~~~~---~~~v~W~~~--~~~~------~~~----------~~~~~~~~~~~~~~~~~~l~i~~~   76 (254)
                      ..+.+|++++|+|.+.|..   ...+.|+|.  |+.+      ...          .++.+.....   .-...|.|.++
T Consensus        10 ~lvkPg~sl~LsC~~SG~s~~s~y~~~WvRQ~PGkglewl~~i~~~g~~~y~~s~kgR~tis~d~s---~nt~yL~l~~l   86 (127)
T d3cx5j1          10 GLVQPSQSLSLTCSVTGYSITSGYYWNWIRLFPGNKLEWVGYISNVGDNNYNPSLKDRLSITRDTS---KNQFFLKLNSV   86 (127)
T ss_dssp             SEECTTSCEEEEEEEESSCTTTSSEEEEEEEETTTEEEEEEEEETTSCEEECTTTTTTBCCEEETT---TTEEEEEECSC
T ss_pred             ceECCCCCEEEEEEEecccccCCCcceeeeECCCcchheeeeecccccchhcccccccceeecccc---cceeecceecc
Confidence            4678999999999998853   245789872  3221      111          1222222211   22347999999


Q ss_pred             CCCCCeEEEEEEE
Q psy7036          77 IETDAGLYKVKAK   89 (254)
Q Consensus        77 ~~~d~G~Y~C~~~   89 (254)
                      +.+|.+.|.|...
T Consensus        87 ~~eDtAvYyCAr~   99 (127)
T d3cx5j1          87 TTEDTATYYCARS   99 (127)
T ss_dssp             CGGGCEEEEEEEE
T ss_pred             ccccceEEEeeee
Confidence            9999999999754

>d1ol0a_ b.1.1.1 (A:) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.91  E-value=4.1e-05  Score=46.17  Aligned_cols=71  Identities=18%  Similarity=0.325  Sum_probs=44.9

Q ss_pred             eeecCCCeEEEEEEEeeCCCC--eEEEEECC--Ee------cc---------cCCcceEEEcCCCCceeeEEEEccCCCC
Q psy7036         122 RQEDDGKRLLFECRIQADPAP--TVIWSHSG--VQ------VK---------EDKRHKFSIDKDGHSYFASLEIIDVTIE  182 (254)
Q Consensus       122 ~~~~~g~~~~l~C~~~~~~~~--~~~W~~~~--~~------~~---------~~~~~~~~~~~~~~~~~~~l~i~~~~~~  182 (254)
                      ..+.+|+.+.|.|.+.|+...  .+.|+|..  +.      +.         .....++....+.......|.|.+++.+
T Consensus        10 ~~vkpg~sl~LsC~~SG~s~s~y~~~W~RQ~PGkglewlg~i~~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~sL~~e   89 (121)
T d1ol0a_          10 GLVQPGGSLRLSCAASGFTFSSYAMSWFRQAPGKEREIVSAVSGSGGSTYYADSVRGRFTISRDNSKNTLYLQMNSLRAE   89 (121)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECTTSCCEEECGGGTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             ceECCCCCeEEEEEEcCcCCcCCceEcceeCCCcceeeeeecCCcccccccchheeeeeEEeccccceeEEeeeeecccc
Confidence            456789999999999876422  47788631  11      11         1111123333333223347999999999


Q ss_pred             CceeEEEEEE
Q psy7036         183 DAGKYKVTAK  192 (254)
Q Consensus       183 d~G~y~C~~~  192 (254)
                      |++.|.|...
T Consensus        90 DtAvYYCAr~   99 (121)
T d1ol0a_          90 DTAVYYCARE   99 (121)
T ss_dssp             GCEEEEEEEC
T ss_pred             cceEEEEEEe
Confidence            9999999754

>d1ymmd1 b.1.1.1 (D:9-104) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.91  E-value=7.8e-07  Score=52.39  Aligned_cols=75  Identities=16%  Similarity=0.292  Sum_probs=45.3

Q ss_pred             eeecCCCeEEEEEEEeeCCCCeEEEEEC--CEecc----------cCCcceEEEcCCCCceeeEEEEccCCCCCceeEEE
Q psy7036         122 RQEDDGKRLLFECRIQADPAPTVIWSHS--GVQVK----------EDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKV  189 (254)
Q Consensus       122 ~~~~~g~~~~l~C~~~~~~~~~~~W~~~--~~~~~----------~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C  189 (254)
                      +.+.+|+.++|.|.... ....+.|||.  ++.+.          .....++....+.......|.|.+++.+|+|.|.|
T Consensus         3 lsV~eG~~vtL~C~~~~-~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~Dsa~YyC   81 (96)
T d1ymmd1           3 LSIQEGENATMNCSYKT-SINNLQWYRQNSGRGLVHLILIRSNEREKHSGRLRVTLDTSKKSSSLLITASRAADTASYFC   81 (96)
T ss_dssp             CCCSSCCCCCBCCBCSS-CEEEEEEECCCSSCCCCCCCEEESSSCCCCSSSCCBCCBGGGTBCCBCCSSCCSTTCSCCEE
T ss_pred             ceECCCCCEEEEEEEeC-CcccEEEEEECCCCCccccccccceecccccccceeeccCcceecccCcCCCCcccCEEEeE
Confidence            45678999999998643 2346899973  22110          00011111111111122479999999999999999


Q ss_pred             EEEcCCCc
Q psy7036         190 TAKNELGE  197 (254)
Q Consensus       190 ~~~~~~~~  197 (254)
                      .+....+.
T Consensus        82 A~~~~~g~   89 (96)
T d1ymmd1          82 ATDTTSGT   89 (96)
T ss_dssp             EEEETTSC
T ss_pred             eEecCCCC
Confidence            98765543

>d1xiwa_ b.1.1.4 (A:) CD3 epsilon chain ectodomain fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 epsilon chain ectodomain fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.90  E-value=2.5e-05  Score=43.37  Aligned_cols=75  Identities=17%  Similarity=0.384  Sum_probs=49.5

Q ss_pred             CCCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCC-CCceeEEEEEEcCC-CcceEEEE
Q psy7036         126 DGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTI-EDAGKYKVTAKNEL-GESNATIS  203 (254)
Q Consensus       126 ~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~-~d~G~y~C~~~~~~-~~~~~~~~  203 (254)
                      .|..|.|+|.-  .....+.|.+++..+..............     .|.+.+... +++|.|.|.+.... ......+.
T Consensus         9 SGTtV~LTCP~--~~~~~i~W~~n~~~~~~~~~~~~~~~~~~-----~l~L~dfSe~e~sGyY~C~~~~~~~~~~~~~LY   81 (91)
T d1xiwa_           9 SGTTVILTCPQ--YPGSEILWQHNDKNIGGDEDDKNIGSDED-----HLSLKEFSELEQSGYYVCYPRGSKPEDANFYLY   81 (91)
T ss_dssp             ETTEEEEECSS--CTTSCEEEEETTEEESSSCSCTTEEEETT-----EEEETTCCHHHHCEEEEEEETTSCGGGCCEEEE
T ss_pred             eCCEEEEECCC--CCCCceeeeeccccccCCCcccccccccc-----eEEecccCccccCceEEEEcCCCCCCCcceEEE
Confidence            48999999963  34467999999988876543222222222     688888876 79999999984322 22334455


Q ss_pred             EEEe
Q psy7036         204 LNFD  207 (254)
Q Consensus       204 ~~v~  207 (254)
                      |..+
T Consensus        82 LKAR   85 (91)
T d1xiwa_          82 LRAR   85 (91)
T ss_dssp             EEEC
T ss_pred             EEeE
Confidence            5544

>d1etzb1 b.1.1.1 (B:1-126) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]

Probab=97.90  E-value=5.5e-05  Score=46.16  Aligned_cols=71  Identities=18%  Similarity=0.302  Sum_probs=43.7

Q ss_pred             eeecCCCeEEEEEEEeeCCC----CeEEEEEC--CEec--------------ccCCcceEEEcCCCCceeeEEEEccCCC
Q psy7036         122 RQEDDGKRLLFECRIQADPA----PTVIWSHS--GVQV--------------KEDKRHKFSIDKDGHSYFASLEIIDVTI  181 (254)
Q Consensus       122 ~~~~~g~~~~l~C~~~~~~~----~~~~W~~~--~~~~--------------~~~~~~~~~~~~~~~~~~~~l~i~~~~~  181 (254)
                      ..+.+|+.++|.|.+.|...    ..+.|+|.  ++.+              ...-..++....+.......|.|.+++.
T Consensus        10 ~lvkPg~sv~LsC~~SG~s~s~~~~~~~W~RQ~pg~~le~l~~i~~~~~~~~~~s~~~Rftis~d~s~~t~~L~i~~l~~   89 (126)
T d1etzb1          10 GILQPSQTLSLTCSFSGFSLSTSGMGVGWIRQPSGEGLEWLADIWWNDKKYYNPSLKSRLTVSKDTSSNQVFLKITSVDT   89 (126)
T ss_dssp             SEECTTCCEEEEEEEESSCTTSTTEEEEEEEEETTTCCEEEEEEETTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             ceECCCCCEEEEEEEeCCccCCCCCCCeEEeCCCCccceEeeecCCCCCceeceeeeEeeEEecccCCcEEEcceecccc
Confidence            35678999999999887532    24678863  1111              0111112333222222234799999999


Q ss_pred             CCceeEEEEEE
Q psy7036         182 EDAGKYKVTAK  192 (254)
Q Consensus       182 ~d~G~y~C~~~  192 (254)
                      +|++.|.|...
T Consensus        90 eDtAvYyCAr~  100 (126)
T d1etzb1          90 SDTATYHCARR  100 (126)
T ss_dssp             GGCEEEEEEEE
T ss_pred             cccceEEEEEe
Confidence            99999999754

>d2fbjh2 b.1.1.2 (H:119-220) Immunoglobulin heavy chain alpha constant domain 1, CH1-alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 1, CH1-alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.89  E-value=4.4e-05  Score=45.21  Aligned_cols=73  Identities=12%  Similarity=0.142  Sum_probs=49.1

Q ss_pred             cCCCeEEEEEEEee-CCC--CceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcCCCc
Q psy7036          21 DEGNRLIFECQLLC-NPK--PDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGE   94 (254)
Q Consensus        21 ~~g~~v~l~C~~~~-~~~--~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~   94 (254)
                      ..++.++|.|.+.+ .|.  ..+.|++++..+... ........++.....+.|.|..........|+|.|.+....
T Consensus        17 ~~~~~v~L~Clv~gF~P~~~i~v~W~~~~~~~~~~-~~~~~~~~~gtys~~S~L~v~~~~W~~~~~ytC~V~H~s~~   92 (102)
T d2fbjh2          17 LSSDPVIIGCLIHDYFPSGTMNVTWGKSGKDITTV-NFPPALASGGRYTMSNQLTLPAVECPEGESVKCSVQHDSNP   92 (102)
T ss_dssp             SCCSSEEEEEEEEEEBSCCCEEEEESCCCSSCEEE-ECCCEECSSSCEEEEEEEEECGGGSCTTCEEEEEEEETTSC
T ss_pred             cCCCcEEEEEEEEcccCCCcEEEEEccCCCcCcee-EeeeEecCCCCEEEEEEEEEeHHHccCCCEEEEEEEECCCC
Confidence            45788999999998 443  357898887654332 12223334445556667888877766677899999875543