Psyllid ID: psy7039
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 516 | 2.2.26 [Sep-21-2011] | |||||||
| Q23551 | 7158 | Twitchin OS=Caenorhabditi | yes | N/A | 0.947 | 0.068 | 0.333 | 9e-68 | |
| A2ASS6 | 35213 | Titin OS=Mus musculus GN= | no | N/A | 0.903 | 0.013 | 0.292 | 4e-44 | |
| Q8WZ42 | 34350 | Titin OS=Homo sapiens GN= | no | N/A | 0.903 | 0.013 | 0.287 | 2e-42 | |
| P16419 | 1132 | Myosin-binding protein C, | no | N/A | 0.5 | 0.227 | 0.272 | 8e-18 | |
| Q00872 | 1141 | Myosin-binding protein C, | no | N/A | 0.554 | 0.250 | 0.267 | 2e-16 | |
| Q14324 | 1141 | Myosin-binding protein C, | no | N/A | 0.257 | 0.116 | 0.366 | 1e-15 | |
| Q8N9C0 | 903 | Immunoglobulin superfamil | no | N/A | 0.282 | 0.161 | 0.317 | 1e-15 | |
| Q5XKE0 | 1136 | Myosin-binding protein C, | no | N/A | 0.257 | 0.117 | 0.373 | 2e-15 | |
| Q14896 | 1274 | Myosin-binding protein C, | no | N/A | 0.259 | 0.105 | 0.315 | 3e-15 | |
| Q90688 | 1272 | Myosin-binding protein C, | no | N/A | 0.238 | 0.096 | 0.307 | 3e-15 |
| >sp|Q23551|UNC22_CAEEL Twitchin OS=Caenorhabditis elegans GN=unc-22 PE=1 SV=3 | Back alignment and function desciption |
|---|
Score = 258 bits (659), Expect = 9e-68, Method: Compositional matrix adjust.
Identities = 183/548 (33%), Positives = 270/548 (49%), Gaps = 59/548 (10%)
Query: 5 VLIKNPFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVV 64
+L KNPFD P +P E TDWD DHVDL+W PP+SDGG+PI Y +E + K G WE A+
Sbjct: 2863 ILAKNPFDRPDRPGRPEPTDWDSDHVDLKWDPPLSDGGAPIEEYQIEKRTKYGRWEPAIT 2922
Query: 65 VPAGETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAPRIDRSTLNDV 124
VP G+T+ TVP L E Y+F+V AVN GP + S + ++AKP+NL P IDR L ++
Sbjct: 2923 VPGGQTTATVPDLTPNEEYEFRVVAVNKGGPSDPSDASKAVIAKPRNLKPHIDRDALKNL 2982
Query: 125 KIKAGQSFSFDVKEFRELSYT-------KSPLRALG-VRANSTKGWVKLSEPFLNHGWSI 176
IKAGQS SFDV E + T +R G V+ ++ + KL + G S
Sbjct: 2983 TIKAGQSISFDVPVSGEPAPTVTWHWPDNREIRNGGRVKLDNPEYQSKLVVKQMERGDSG 3042
Query: 177 NGQVCQIGGRADVQTTKSETVLDIPF-------CSRSDTGHYSLT-----------LENN 218
+ + + + T V+D P S H +L +EN
Sbjct: 3043 TFTIKAVNANGEDEATVKINVIDKPTSPNGPLDVSDVHGDHVTLNWRAPDDDGGIPIENY 3102
Query: 219 L--------GTATASAHVTGTEFTD--NNVHEGKAYEYRVSAVNAAGTEKPKISLDALIG 268
+ G +A V G + T + + G Y++RV+AVNA G P + +
Sbjct: 3103 VIEKYDTASGRWVPAAKVAGDKTTAVVDGLIPGHEYKFRVAAVNAEGESDPLETFGTTLA 3162
Query: 269 KRIKEFVTSTTA-----------SLNIKNSVRKDSGI----YKIEAKNDYGIDMADIEVV 313
K + T A L K D G Y +E K+++ D+ V
Sbjct: 3163 KDPFDKPGKTNAPEITDWDKDHVDLEWKPPA-NDGGAPIEEYVVEMKDEFSPFWNDVAHV 3221
Query: 314 VVSKPGPPTGPIDYTTVTPESVSMSWKPPV---DDGGTPITGA---PKITSDLSIRDMTV 367
+ G + + + K + D + + A P + SI+++ V
Sbjct: 3222 PAGQTNATVGNLKEGSKYEFRIRAKNKAGLGDPSDSASAVAKARNVPPVIDRNSIQEIKV 3281
Query: 368 LAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSY 427
AG++F++ +P SG P PT WT G V D R+K + +T + K A R +D+G+Y
Sbjct: 3282 KAGQDFSLNIPVSGEPTPTITWTFEGTPVESDDRMKLNNEDGKTKFHVKRALR-SDTGTY 3340
Query: 428 TIQLVNTVGSDSASCKVYVVDKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVV 487
I+ N G+D+A KV V+D PS P+GPLDV++I + C L+WK P DDGG+ I++YV+
Sbjct: 3341 IIKAENENGTDTAEVKVTVLDHPSSPRGPLDVTNIVKDGCDLAWKEPEDDGGAEISHYVI 3400
Query: 488 EKYESATG 495
EK ++ATG
Sbjct: 3401 EKQDAATG 3408
|
Regulator of muscle contraction and relaxation. Senses mechanical strain that occurs during muscle activity by unfolding in clearly resolvable steps at differing forces. Caenorhabditis elegans (taxid: 6239) EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1 |
| >sp|A2ASS6|TITIN_MOUSE Titin OS=Mus musculus GN=Ttn PE=1 SV=1 | Back alignment and function description |
|---|
Score = 179 bits (454), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 172/588 (29%), Positives = 262/588 (44%), Gaps = 122/588 (20%)
Query: 13 EPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVVVPAG--ET 70
+PG P + D + + + W PI DGGS ITGY+VE+ + + V PAG T
Sbjct: 23544 KPGPPGNPRVLDTSRSSISIAWNKPIYDGGSEITGYMVEIALPEEDEWQVVTPPAGLKAT 23603
Query: 71 SCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAPRI--DRSTLNDVKIKA 128
S T+ LIE + Y+ ++ A+N+ G GE + A+ + L P I D V I+A
Sbjct: 23604 SYTITSLIENQEYKIRIYAMNSEGLGEPALVPGTPKAEERMLPPEIELDADLRKVVTIRA 23663
Query: 129 GQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRAD 188
+ V P++ R W + HG S++ +A
Sbjct: 23664 CCTLRLFV-----------PIKG---RPAPEVKWAR------EHGESLD--------KAS 23695
Query: 189 VQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVTGTEFTDNNVHEGKAYEYRV 248
+++T S T+L + +R D+G Y LT+EN+ G+ +A +V + T K E V
Sbjct: 23696 IESTSSYTLLVVGNVNRFDSGKYILTVENSSGSKSAFVNVRVLD-TPGPPQNLKIKE--V 23752
Query: 249 SAVNAAGTEKPKISLDALIGKRIKEFVT----------STTASLNIKNSVRKD------S 292
+ + T +P + LD G +IK ++ ST A+ K S + D S
Sbjct: 23753 TKTSVTLTWEPPL-LDG--GSKIKNYIVEKRESTRKAYSTVATNCHKTSWKVDQLQEGCS 23809
Query: 293 GIYKIEAKNDYGIDM--ADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGT-- 348
+++ A+N+YGI + E V S+ P G I T VT SVS+SW+ P DGG+
Sbjct: 23810 YYFRVLAENEYGIGLPAETAESVKASERPLPPGKITLTDVTRNSVSLSWEKPEHDGGSRI 23869
Query: 349 --------------------------PITG--------------------------APKI 356
ITG P I
Sbjct: 23870 LGYIVEMQSKGSDRWATCATVKVTEATITGLIQGEEYSFRVSAQNEKGISDPRQLSVPVI 23929
Query: 357 TSDLSI--------RDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSE 408
DL I TVLAGE+ I VPF GRP P W + + R+ E++E
Sbjct: 23930 AKDLVIPPAFKLLFNTFTVLAGEDLKIDVPFIGRPPPAVTWHKDDIPLKQTTRVNAESTE 23989
Query: 409 NQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQGPLDVSDITPESCS 468
N ++ K A R D G YT++L N+ G + + V V+DKP PP GP+ + ++T +S +
Sbjct: 23990 NNSLLTIKEACRE-DVGHYTVKLTNSAGEATETLNVIVLDKPGPPTGPVKMDEVTADSVT 24048
Query: 469 LSWKPPLDDGGSPITNYVVEKYESATGVSDLF---ISKSEVKTGSLMT 513
LSW+PP DGGS I NY+VEK +++T + ++++ +K L T
Sbjct: 24049 LSWEPPKYDGGSSINNYIVEKRDTSTTAWQIVSATVARTTIKACRLKT 24096
|
Key component in the assembly and functioning of vertebrate striated muscles. By providing connections at the level of individual microfilaments, it contributes to the fine balance of forces between the two halves of the sarcomere. The size and extensibility of the cross-links are the main determinants of sarcomere extensibility properties of muscle. In non-muscle cells, seems to play a role in chromosome condensation and chromosome segregation during mitosis. Might link the lamina network to chromatin or nuclear actin, or both during interphase. Mus musculus (taxid: 10090) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q8WZ42|TITIN_HUMAN Titin OS=Homo sapiens GN=TTN PE=1 SV=4 | Back alignment and function description |
|---|
Score = 174 bits (440), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 169/588 (28%), Positives = 259/588 (44%), Gaps = 122/588 (20%)
Query: 13 EPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVVVPAG--ET 70
+PG P + D + + + W PI DGGS ITGY+VE+ + + V PAG T
Sbjct: 22682 KPGPPGNPRVLDTSRSSISIAWNKPIYDGGSEITGYMVEIALPEEDEWQIVTPPAGLKAT 22741
Query: 71 SCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAPRI--DRSTLNDVKIKA 128
S T+ GL E + Y+ ++ A+N+ G GE + A+ + L P I D V I+A
Sbjct: 22742 SYTITGLTENQEYKIRIYAMNSEGLGEPALVPGTPKAEDRMLPPEIELDADLRKVVTIRA 22801
Query: 129 GQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRAD 188
+ V P++ R W + +HG S++ +A
Sbjct: 22802 CCTLRLFV-----------PIKG---RPAPEVKWAR------DHGESLD--------KAS 22833
Query: 189 VQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVTGTEFTDNNVHEGKAYEYRV 248
+++T S T+L + +R D+G Y LT+EN+ G+ +A +V + T + K E V
Sbjct: 22834 IESTSSYTLLIVGNVNRFDSGKYILTVENSSGSKSAFVNVRVLD-TPGPPQDLKVKE--V 22890
Query: 249 SAVNAAGTEKPKISLDALIGKRIKEFVT----------STTASLNIKNSVRKD------S 292
+ + T P + LD G +IK ++ ST A+ K S + D S
Sbjct: 22891 TKTSVTLTWDPPL-LDG--GSKIKNYIVEKRESTRKAYSTVATNCHKTSWKVDQLQEGCS 22947
Query: 293 GIYKIEAKNDYGIDM--ADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGT-- 348
+++ A+N+YGI + E V S+ P G I VT SVS+SW+ P DGG+
Sbjct: 22948 YYFRVLAENEYGIGLPAETAESVKASERPLPPGKITLMDVTRNSVSLSWEKPEHDGGSRI 23007
Query: 349 --------------------------PITG--------------------------APKI 356
ITG P I
Sbjct: 23008 LGYIVEMQTKGSDKWATCATVKVTEATITGLIQGEEYSFRVSAQNEKGISDPRQLSVPVI 23067
Query: 357 TSDLSI--------RDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSE 408
DL I TVLAGE+ + VPF GRP P W + + R+ E++E
Sbjct: 23068 AKDLVIPPAFKLLFNTFTVLAGEDLKVDVPFIGRPTPAVTWHKDNVPLKQTTRVNAESTE 23127
Query: 409 NQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQGPLDVSDITPESCS 468
N ++ K A R D G Y ++L N+ G + V V+DKP PP GP+ + ++T +S +
Sbjct: 23128 NNSLLTIKDACRE-DVGHYVVKLTNSAGEAIETLNVIVLDKPGPPTGPVKMDEVTADSIT 23186
Query: 469 LSWKPPLDDGGSPITNYVVEKYESATGVSDLF---ISKSEVKTGSLMT 513
LSW PP DGGS I NY+VEK +++T + ++++ +K L T
Sbjct: 23187 LSWGPPKYDGGSSINNYIVEKRDTSTTTWQIVSATVARTTIKACRLKT 23234
|
Key component in the assembly and functioning of vertebrate striated muscles. By providing connections at the level of individual microfilaments, it contributes to the fine balance of forces between the two halves of the sarcomere. The size and extensibility of the cross-links are the main determinants of sarcomere extensibility properties of muscle. In non-muscle cells, seems to play a role in chromosome condensation and chromosome segregation during mitosis. Might link the lamina network to chromatin or nuclear actin, or both during interphase. Homo sapiens (taxid: 9606) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|P16419|MYPC2_CHICK Myosin-binding protein C, fast-type OS=Gallus gallus GN=MYBPC2 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 92.4 bits (228), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 78/286 (27%), Positives = 135/286 (47%), Gaps = 28/286 (9%)
Query: 231 TEFTDNNVHEGKAYEYRVSAVNAAGTEKPKISLDALI--------GKRIKEFVTSTTASL 282
T + + EG YE RV AVNA G +P ++ + + E VT TTA++
Sbjct: 688 TTYESTKMIEGVFYEMRVFAVNAIGVSQPSLNTQPFMPIAPTSEPTHVVLEDVTDTTATI 747
Query: 283 NIKNSVRKDSG-------IYKIEAKNDY-GIDMADIEVVVVSKPGPPTGPIDYTTVTPES 334
+ R +G + E N++ + +E ++ G PTG V S
Sbjct: 748 KWRPPERIGAGGVDGYLVEWCREGSNEWVAANTELVERCGLTARGLPTGERLLFRVI--S 805
Query: 335 VSMSWKPPVDDGGTPIT-----GAPKITSDLSIRDMTVL-AGEEFTITVPFSGRPKPTPI 388
V+M+ K P P+T PKI +R + GE+ + +PF G+P+P
Sbjct: 806 VNMAGKSPPATMAQPVTIREIVERPKIRLPRHLRQTYIRRVGEQVNLVIPFQGKPRPQVT 865
Query: 389 WTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVD 448
W+ G + + ++ TS+ +++ +SA R SG+Y +++ D A+ ++ VV+
Sbjct: 866 WSREGGALPAE--VQTRTSDVDSVFFIRSAARPL-SGNYEMRVRIDNMEDCATLRLRVVE 922
Query: 449 KPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESAT 494
+P PPQ + V ++ + L W+PP DDG + I+ Y V+K ++ T
Sbjct: 923 RPGPPQA-VRVMEVWGSNALLQWEPPKDDGNAEISGYTVQKADTRT 967
|
Thick filament-associated protein located in the crossbridge region of vertebrate striated muscle a bands. In vitro it binds MHC, F-actin and native thin filaments, and modifies the activity of actin-activated myosin ATPase. It may modulate muscle contraction or may play a more structural role. Gallus gallus (taxid: 9031) |
| >sp|Q00872|MYPC1_HUMAN Myosin-binding protein C, slow-type OS=Homo sapiens GN=MYBPC1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 87.8 bits (216), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 90/337 (26%), Positives = 134/337 (39%), Gaps = 51/337 (15%)
Query: 163 VKLSEPFLNHGWSINGQVCQIG--GRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLG 220
++SE N W NG+ G R ++ + +L I +++D YS+
Sbjct: 363 CEVSEDDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKADAAEYSVMTTGGQS 422
Query: 221 TATASAHV----TGTEFTDNNVHEGKAYEYRVSAVNAAGTEKPKISLDALIGKRIKEFVT 276
+A S + T TD V+ GK + + K L R+K
Sbjct: 423 SAKLSVDLKPLKILTPLTDQTVNLGKEICLKCEISENIPGKWTKNGLPVQESDRLKVVHK 482
Query: 277 STTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVS 336
L I N++ +D G Y P Y P V
Sbjct: 483 GRIHKLVIANALTEDEGDYVF-------------------------APDAYNVTLPAKVH 517
Query: 337 MSWKPPVDDGGTPITGAPKITSDLSIRD--MTVLAGEEFTITVPFSGRPKPTPIWTVNGD 394
+ PKI D D +TV+AG + + +P SG P P +W+ GD
Sbjct: 518 -------------VIDPPKIILDGLDADNTVTVIAGNKLRLEIPISGEPPPKAMWS-RGD 563
Query: 395 E--VSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSP 452
+ + GRI+ E+ + + A+R DSG Y I L N G AS KV VVD P P
Sbjct: 564 KAIMEGSGRIRTESYPDSSTLVIDIAER-DDSGVYHINLKNEAGEAHASIKVKVVDFPDP 622
Query: 453 PQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEK 489
P P V+++ + C ++W+PP DGGSPI Y +E+
Sbjct: 623 PVAPT-VTEVGDDWCIMNWEPPAYDGGSPILGYFIER 658
|
Thick filament-associated protein located in the crossbridge region of vertebrate striated muscle a bands. In vitro it binds MHC, F-actin and native thin filaments, and modifies the activity of actin-activated myosin ATPase. It may modulate muscle contraction or may play a more structural role. Homo sapiens (taxid: 9606) |
| >sp|Q14324|MYPC2_HUMAN Myosin-binding protein C, fast-type OS=Homo sapiens GN=MYBPC2 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 85.1 bits (209), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 52/142 (36%), Positives = 81/142 (57%), Gaps = 9/142 (6%)
Query: 354 PKITSDLSIRD----MTVLAGEEFTITVPFSGRPKPTPIWTVNGDEV--SPDGRIKFETS 407
PKI D S + + V+AG + + V +G P P W + GDEV + +GR + E
Sbjct: 539 PKIHLDCSGKTSENAIVVVAGNKLRLDVSITGEPPPVATW-LKGDEVFTTTEGRTRIEKR 597
Query: 408 ENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQGPLDVSDITPESC 467
+ + + +SA+R D G YTI++ N VG D AS + VVD P PP+ + ++ + +
Sbjct: 598 VDCSSFVIESAQRE-DEGRYTIKVTNPVGEDVASIFLQVVDVPDPPEA-VRITSVGEDWA 655
Query: 468 SLSWKPPLDDGGSPITNYVVEK 489
L W+PP+ DGG P+T Y+VE+
Sbjct: 656 ILVWEPPMYDGGKPVTGYLVER 677
|
Thick filament-associated protein located in the crossbridge region of vertebrate striated muscle a bands. In vitro it binds MHC, F-actin and native thin filaments, and modifies the activity of actin-activated myosin ATPase. It may modulate muscle contraction or may play a more structural role. Homo sapiens (taxid: 9606) |
| >sp|Q8N9C0|IGS22_HUMAN Immunoglobulin superfamily member 22 OS=Homo sapiens GN=IGSF22 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 84.7 bits (208), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 78/148 (52%), Gaps = 2/148 (1%)
Query: 349 PITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSE 408
P T P + L+ +TV G I VPF G+P P W +G EV+ + R+ E E
Sbjct: 601 PPTIDPSVLEALAAHAITVKVGHTAHIKVPFRGKPLPKVTWYKDGMEVTEEERVSMERGE 660
Query: 409 NQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQGPLDVSDITPESCS 468
+Q + + R DSG ++L N GS +A+ + V++ P P V+D+T E+ +
Sbjct: 661 DQALLTISNCVRE-DSGLILLKLKNDHGSATATLHLSVLEPPGFASQP-QVTDVTKEAVT 718
Query: 469 LSWKPPLDDGGSPITNYVVEKYESATGV 496
++W P DGG+P+ Y+VE+ + + +
Sbjct: 719 ITWNAPTQDGGAPVLGYIVERRKKGSNL 746
|
Homo sapiens (taxid: 9606) |
| >sp|Q5XKE0|MYPC2_MOUSE Myosin-binding protein C, fast-type OS=Mus musculus GN=Mybpc2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 84.3 bits (207), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/142 (37%), Positives = 81/142 (57%), Gaps = 9/142 (6%)
Query: 354 PKITSDLSIR----DMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEV--SPDGRIKFETS 407
PKI D S + + V+AG + + V +G P PT W + GDEV + +GR E
Sbjct: 534 PKIHLDCSGKTSDNSIVVVAGNKLRLDVAITGEPPPTATW-LRGDEVFTATEGRTHIEQR 592
Query: 408 ENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQGPLDVSDITPESC 467
+ + + +SA+R +D G YTI++ N VG D AS + VVD P PP+ + V+ + +
Sbjct: 593 PDCSSFVIESAER-SDEGRYTIKVTNPVGEDVASIFLRVVDVPDPPEA-VRVTSVGEDWA 650
Query: 468 SLSWKPPLDDGGSPITNYVVEK 489
L W+PP DGG P+T Y++E+
Sbjct: 651 ILVWEPPKYDGGQPVTGYLMER 672
|
Thick filament-associated protein located in the crossbridge region of vertebrate striated muscle a bands. In vitro it binds MHC, F-actin and native thin filaments, and modifies the activity of actin-activated myosin ATPase. It may modulate muscle contraction or may play a more structural role. Mus musculus (taxid: 10090) |
| >sp|Q14896|MYPC3_HUMAN Myosin-binding protein C, cardiac-type OS=Homo sapiens GN=MYBPC3 PE=1 SV=4 | Back alignment and function description |
|---|
Score = 84.0 bits (206), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 53/168 (31%), Positives = 84/168 (50%), Gaps = 34/168 (20%)
Query: 354 PKITSDLSIR---DMTVLAGEEFTITVPFSGRPKPTPIW--------------------- 389
PKI D R + V+AG + + VP SG P PT IW
Sbjct: 645 PKIHLDCPGRIPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPED 704
Query: 390 TVNGDE--------VSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSAS 441
T + DE +GR++ ET+++++I+ + A++ D G YT+ + N VG D +
Sbjct: 705 TGDSDEWVFDKKLLCETEGRVRVETTKDRSIFTVEGAEK-EDEGVYTVTVKNPVGEDQVN 763
Query: 442 CKVYVVDKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEK 489
V V+D P P P +S++ +SC++ W+PP DGG PI Y++E+
Sbjct: 764 LTVKVIDVPDAPAAP-KISNVGEDSCTVQWEPPAYDGGQPILGYILER 810
|
Thick filament-associated protein located in the crossbridge region of vertebrate striated muscle a bands. In vitro it binds MHC, F-actin and native thin filaments, and modifies the activity of actin-activated myosin ATPase. It may modulate muscle contraction or may play a more structural role. Homo sapiens (taxid: 9606) |
| >sp|Q90688|MYPC3_CHICK Myosin-binding protein C, cardiac-type OS=Gallus gallus GN=MYBPC3 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 84.0 bits (206), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 76/153 (49%), Gaps = 30/153 (19%)
Query: 365 MTVLAGEEFTITVPFSGRPKPTPIWT-----------VNGDEVSP--------------- 398
+ V+AG + + VP SG P PT IW N D ++P
Sbjct: 658 IVVVAGNKLRLDVPISGDPTPTVIWQKVNKKGELVHQSNEDSLTPSENSSDLSTDSKLLF 717
Query: 399 --DGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQGP 456
+GR++ E E+ ++ + A++ D G Y + + N VG D A V V+D P PP+ P
Sbjct: 718 ESEGRVRVEKHEDHCVFIIEGAEKE-DEGVYRVIVKNPVGEDKADITVKVIDVPDPPEAP 776
Query: 457 LDVSDITPESCSLSWKPPLDDGGSPITNYVVEK 489
+S+I + C++ W+PP DGG P+ Y++E+
Sbjct: 777 -KISNIGEDYCTVQWQPPTYDGGQPVLGYILER 808
|
Thick filament-associated protein located in the crossbridge region of vertebrate striated muscle A bands. In vitro it binds MHC, F-actin and native thin filaments, and modifies the activity of actin-activated myosin ATPase. It may modulate muscle contraction or may play a more structural role. May be involved in the early phase of myofibrillogenesis. Gallus gallus (taxid: 9031) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 516 | ||||||
| 357609022 | 7481 | hypothetical protein KGM_13458 [Danaus p | 0.868 | 0.059 | 0.348 | 2e-72 | |
| 345486445 | 8816 | PREDICTED: twitchin-like [Nasonia vitrip | 0.868 | 0.050 | 0.334 | 1e-69 | |
| 383852204 | 8627 | PREDICTED: twitchin-like [Megachile rotu | 0.903 | 0.054 | 0.333 | 1e-67 | |
| 328789682 | 8619 | PREDICTED: LOW QUALITY PROTEIN: twitchin | 0.893 | 0.053 | 0.331 | 1e-66 | |
| 32565889 | 7158 | Protein UNC-22, isoform b [Caenorhabditi | 0.947 | 0.068 | 0.333 | 6e-66 | |
| 380026625 | 8679 | PREDICTED: LOW QUALITY PROTEIN: twitchin | 0.893 | 0.053 | 0.325 | 6e-66 | |
| 392901026 | 6992 | Protein UNC-22, isoform d [Caenorhabditi | 0.947 | 0.069 | 0.333 | 8e-66 | |
| 392901030 | 6435 | Protein UNC-22, isoform e [Caenorhabditi | 0.947 | 0.075 | 0.333 | 8e-66 | |
| 392901028 | 6619 | Protein UNC-22, isoform c [Caenorhabditi | 0.947 | 0.073 | 0.333 | 8e-66 | |
| 392901023 | 6848 | Protein UNC-22, isoform g [Caenorhabditi | 0.947 | 0.071 | 0.333 | 9e-66 |
| >gi|357609022|gb|EHJ66254.1| hypothetical protein KGM_13458 [Danaus plexippus] | Back alignment and taxonomy information |
|---|
Score = 280 bits (715), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 205/589 (34%), Positives = 272/589 (46%), Gaps = 141/589 (23%)
Query: 2 DHSVLIKNPFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEK 61
+ +++ KNPFDEPG P TDWDKDHVDL+WTPP DGG+PI GY+VE KDK GNWEK
Sbjct: 3470 EEAIVAKNPFDEPGAPGTPSVTDWDKDHVDLKWTPPKEDGGAPIEGYIVEKKDKFGNWEK 3529
Query: 62 AVVVPAGETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAPRIDRSTL 121
A+ VPA +TSCTVP L+EG+TY+F+VRAVN AGPG S T PIVAKP+N+AP+IDR+ L
Sbjct: 3530 ALEVPADKTSCTVPDLVEGQTYEFRVRAVNKAGPGVPSDSTHPIVAKPRNMAPKIDRTNL 3589
Query: 122 NDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVC 181
D+KIK GQ F FDVK EP W + +
Sbjct: 3590 IDIKIKVGQKFGFDVK--------------------------VSGEPMPETKWFLGKREV 3623
Query: 182 QIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVT--------GTEF 233
+ G VQ + + + +R+D+G Y++T EN G A V G
Sbjct: 3624 KSSGDMKVQHSDYNSKIACKAATRADSGRYTITAENVNGKDVAEVEVIVLSVPSPPGGPL 3683
Query: 234 TDNNVHEGKAY---------------EYRVSA--------VNAAGTEKPK--ISLDALIG 268
++VH A +Y V V A T+ P+ +++D L
Sbjct: 3684 KVSDVHANGAKLSWNPPADDGGQPIEKYVVERMDEATGRWVQAGETDGPQTNLAVDGLTP 3743
Query: 269 KRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYT 328
+F ++N + + + EAKN + V SKPG P
Sbjct: 3744 GHKYKF---RVRAVNRQGKSEPLTTPHATEAKNPFD---------VASKPGTPR----IK 3787
Query: 329 TVTPESVSMSWKPPVDDGGTPITG---------AP------KITSDLS---IRDMTVLAG 370
+ V + W P DGG PITG AP +I D++ + D+
Sbjct: 3788 DFDKDFVELEWTRPDSDGGAPITGYVIEKKDRFAPDWEECAQIEGDVTSGKVPDLIEGNT 3847
Query: 371 EEFTI--------------TVPFSGRPK-------------------------------- 384
EF + T P RPK
Sbjct: 3848 YEFRVRAVNKAGKGVPSDSTAPHVARPKNLAPKIDRNFMFDIKIKVGQNFELDVPVAGEP 3907
Query: 385 -PTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCK 443
PT W + V RIK + T R AKRA D+G+YT++ N G+DSA+ K
Sbjct: 3908 TPTKEWLHGENMVLNTDRIKVVNDAHSTKIRVIDAKRA-DTGTYTLKAKNINGTDSATVK 3966
Query: 444 VYVVDKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYES 492
+ V+D P PP+GPL V DIT C+L W+PP DDGGS IT+YVVEK +
Sbjct: 3967 IVVMDVPLPPEGPLRVDDITKSGCTLRWRPPKDDGGSEITHYVVEKMDQ 4015
|
Source: Danaus plexippus Species: Danaus plexippus Genus: Danaus Family: Nymphalidae Order: Lepidoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|345486445|ref|XP_003425477.1| PREDICTED: twitchin-like [Nasonia vitripennis] | Back alignment and taxonomy information |
|---|
Score = 270 bits (690), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 200/598 (33%), Positives = 283/598 (47%), Gaps = 150/598 (25%)
Query: 2 DHSVLIKNPFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEK 61
+ +++ KNP+DEP KPTDLEATDWDKDH+DL+W+PP +DGGSPITGY+VE KDK G WEK
Sbjct: 4715 EQTIIAKNPYDEPDKPTDLEATDWDKDHIDLKWSPPKNDGGSPITGYIVEKKDKYGEWEK 4774
Query: 62 AVVVPA-GET----SCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAPRI 116
A+ +PA GE+ TV L+EG+ Y+F+VRAVN AGP E S T I+AKP+N AP+I
Sbjct: 4775 ALEIPAYGESDSPVRATVGDLVEGQPYEFRVRAVNKAGPSEPSNQTPVIIAKPRNQAPKI 4834
Query: 117 DRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSI 176
DR+ L DVK+KAGQ+F FDVK G A ST+ W +
Sbjct: 4835 DRTNLIDVKVKAGQNFGFDVK-------------VSGEPAPSTR-------------WLL 4868
Query: 177 NGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVT-----GT 231
+ + + R ++ T L++ +R+++G Y + EN G A VT GT
Sbjct: 4869 DSKDVRTNERVKIKDVDYNTQLNVRMATRAESGKYQIIAENINGKDVAYVKVTVLDKPGT 4928
Query: 232 -----EFTDNNVHEGKAY-------------EYRVSAVN--------AAGTEKP--KISL 263
+ TD K +Y V ++ A T+ P K+ +
Sbjct: 4929 PEGPIKITDVTAEGCKLAWKPPEDDGGCPIEKYVVEKLDEATGRWVPAGETDGPETKLKV 4988
Query: 264 DALIGKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTG 323
+ L +F ++N + + + IEAKN + +PG P
Sbjct: 4989 EGLTPNHKYKF---RVRAVNKQGKGEPLTALQSIEAKNPF------------DEPGKPGT 5033
Query: 324 P--IDYTTVTPESVSMSWKPPVDDGGTPITG---------------APKITSDLS---IR 363
P DY + + V + W P+ DGG+P+TG +I D++ +
Sbjct: 5034 PKIKDYDS---DFVELEWTRPLTDGGSPVTGYVIEKRDKYSPSWEKCAEIEGDVTSGKVN 5090
Query: 364 DMTVLAGEEFTI--------------TVPFSGRPK------------------------- 384
D+ EF + T P RPK
Sbjct: 5091 DLVEGTPYEFRVRAVNKAGPGEPSDATKPHIARPKNLPPKIDRKYMLDVKVRAGGFFDFD 5150
Query: 385 --------PTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVG 436
P W++ G+ V+ RIK + T R A R +DSG YT+ NT G
Sbjct: 5151 VPVIGEPPPKKEWSLKGNVVTSSDRIKIVNEDYNTRVRVLEALR-SDSGEYTLTARNTNG 5209
Query: 437 SDSASCKVYVVDKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESAT 494
DSA+ +V V+D PSPP+GPL + ++T C LSWKPP DDGGS I NY +EK ++ +
Sbjct: 5210 KDSATLRVIVLDVPSPPEGPLKIGNVTRNGCKLSWKPPKDDGGSEILNYAIEKMDAES 5267
|
Source: Nasonia vitripennis Species: Nasonia vitripennis Genus: Nasonia Family: Pteromalidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|383852204|ref|XP_003701618.1| PREDICTED: twitchin-like [Megachile rotundata] | Back alignment and taxonomy information |
|---|
Score = 263 bits (672), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 192/575 (33%), Positives = 276/575 (48%), Gaps = 109/575 (18%)
Query: 1 MDHSVLIKNPFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWE 60
MD ++ K+PFD+P KP ATDWDKDHVDL+WT P DGGSPITGY++E + + G WE
Sbjct: 5142 MD-TITAKDPFDKPDKPGAPVATDWDKDHVDLEWTAPKKDGGSPITGYIIEKRPRFGQWE 5200
Query: 61 KAVVVPAGETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAPRIDRST 120
KAV + +TS VP LIEG+ Y+F+V AVN AGPGE S+ ++PIVAKP+ LAP D
Sbjct: 5201 KAVEIDGNKTSGRVPDLIEGQEYEFRVIAVNKAGPGEPSEASSPIVAKPRFLAPSFDPHL 5260
Query: 121 LNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQV 180
LND+ ++AGQ S+ + P++A P WS++G V
Sbjct: 5261 LNDLVVRAGQKISYII-----------PIQA---------------SPKPTATWSLDGAV 5294
Query: 181 CQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVTGTE-------- 232
R ++ TT +ET +IPF RSDTG Y+LTLEN+ G +ASA VT +
Sbjct: 5295 IMADSRHEMYTTHTETTFEIPFSVRSDTGRYTLTLENDQGKFSASARVTVLDRPSPPQKP 5354
Query: 233 FTDNNVHEGKAYEYRVSAVNAAGTEKPKISLDALIGKR--IKEFVTSTTASLNIKNSVRK 290
+N+ + + ++ G+ ++ + R + ST S + +
Sbjct: 5355 LQISNITKEGCHLTWGHPLDDGGSPILHYVVEKMDLSRGTWSDAGMSTVLSHEVARLTHR 5414
Query: 291 DSGIYKIEAKNDYG-IDMADIEVVVVSK-----PGPPTGPIDYTTVTPESVSMSWKPPVD 344
+++++A N G D + +V+K P P P T + V + W P
Sbjct: 5415 KEYLFRVKAVNTIGESDPLEAPKSIVAKNEFDEPDAPGKP-QITDWDKDHVDLKWPAPSS 5473
Query: 345 DGGTPITG------------------APKITSDLSIRDMTVLAGEEF-TITVPFSGRPKP 385
DGG+PITG P + ++ D+T EF I V +G+ +P
Sbjct: 5474 DGGSPITGYIVQKKEKGSPYWVNAVHVPPNQTSTTVPDLTEGQEYEFRVIAVNAAGQSEP 5533
Query: 386 -------------------TPI--------------------------WTVNGDEVSPDG 400
TP+ WTV E+
Sbjct: 5534 SEPSDLVTAKPRYLAPKIKTPLQDIRIKAGLIFHVDIDFVGEPTPEVTWTVGSKELQTTD 5593
Query: 401 RIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQGPLDVS 460
R + TI +A+R +DSG Y + L N+ G D S +V V+D+P PP+GPL
Sbjct: 5594 RTTVTSIGYHTIVHTVNAQR-SDSGLYHLLLKNSSGIDEGSFQVIVLDRPGPPEGPLQYE 5652
Query: 461 DITPESCSLSWKPPLDDGGSPITNYVVEKYESATG 495
+IT +S +LSWKPP D+GGS IT YV+EK + G
Sbjct: 5653 EITSQSVTLSWKPPKDNGGSEITGYVIEKRDLTHG 5687
|
Source: Megachile rotundata Species: Megachile rotundata Genus: Megachile Family: Megachilidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|328789682|ref|XP_003251305.1| PREDICTED: LOW QUALITY PROTEIN: twitchin [Apis mellifera] | Back alignment and taxonomy information |
|---|
Score = 260 bits (665), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 192/580 (33%), Positives = 275/580 (47%), Gaps = 119/580 (20%)
Query: 1 MDHSVLIKNPFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWE 60
MD ++ K+P+D+P KP ATDWDKD VDL+WTPP DGGSPITGY+VE K + G WE
Sbjct: 5137 MD-TITAKDPYDKPDKPGTPVATDWDKDRVDLEWTPPKKDGGSPITGYIVEKKPRFGQWE 5195
Query: 61 KAVVVPAGETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAPRIDRST 120
KA+ + +TS VP L+EG+ Y+F+V AVN AGPGE S+ ++PIVAKP+ LAP D
Sbjct: 5196 KALEIDGAKTSARVPDLVEGQEYEFRVIAVNKAGPGEPSEASSPIVAKPRFLAPSFDPHA 5255
Query: 121 LNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQV 180
L+D+ ++AGQ ++ + P++A P WS++G V
Sbjct: 5256 LSDLVVRAGQKINYII-----------PIQA---------------SPKPTATWSVDGAV 5289
Query: 181 CQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVTG---------- 230
R ++ TT +ET +IPF RSDTG Y+LTLEN G +ASA VT
Sbjct: 5290 IMADSRHEMYTTSTETTFEIPFSVRSDTGRYTLTLENEHGKFSASARVTVLDRPSPPQKP 5349
Query: 231 ---TEFTDNNVHE--GKAYEYRVSAVNAAGTEKPKISLDALIGKRIKEFVTSTTASLNIK 285
++ T H G + S + EK +S + ++ A L
Sbjct: 5350 LEISKITKEGCHLAWGHPLDDGGSPILHYVIEKMDLSRGTWSDAGMSMILSHEVARL--- 5406
Query: 286 NSVRKDSGIYKIEAKNDYG-IDMADIEVVVVSK-----PGPPTGPIDYTTVTPESVSMSW 339
+ + +++++A N G D + +V+K P P P T + V + W
Sbjct: 5407 --IHRKEYLFRVKAVNTIGESDPLEAPKSIVAKNEFDEPDAPGKP-QITDWDKDHVDLQW 5463
Query: 340 KPPVDDGGTPIT------------------GAPKITSDLSIRDMTVLAGEEF-TITVPFS 380
P DGG+PIT P ++ ++ D+T EF I V +
Sbjct: 5464 PVPSSDGGSPITEYIVQKKEKGSPYWVNAIHVPPTQTNATVPDLTEGQEYEFRVIAVNAA 5523
Query: 381 GRPKP-------------------TP--------------------------IWTVNGDE 395
G+ +P TP IWTV E
Sbjct: 5524 GQSEPSEPSDLVTAKPRYLAPKIKTPLQDIRVKAGLIFHVDIDFIGEPTPEVIWTVGSRE 5583
Query: 396 VSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQG 455
+ D R + TI +A+R +DSG Y + L N+ G D S +V V+D+P PP+G
Sbjct: 5584 LESDKRTTVTSIGYHTIVHTVNAQR-SDSGLYHLLLKNSSGIDEGSFQVIVLDRPGPPEG 5642
Query: 456 PLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATG 495
PL +IT +S +LSWKPP D+GGS IT Y++EK + G
Sbjct: 5643 PLQYEEITSQSVTLSWKPPKDNGGSEITGYIIEKRDLTHG 5682
|
Source: Apis mellifera Species: Apis mellifera Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|32565889|ref|NP_502274.2| Protein UNC-22, isoform b [Caenorhabditis elegans] gi|74966877|sp|Q23551.3|UNC22_CAEEL RecName: Full=Twitchin; AltName: Full=Uncoordinated protein 22 gi|26985879|emb|CAA98065.2| Protein UNC-22, isoform b [Caenorhabditis elegans] | Back alignment and taxonomy information |
|---|
Score = 258 bits (659), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 183/548 (33%), Positives = 270/548 (49%), Gaps = 59/548 (10%)
Query: 5 VLIKNPFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVV 64
+L KNPFD P +P E TDWD DHVDL+W PP+SDGG+PI Y +E + K G WE A+
Sbjct: 2863 ILAKNPFDRPDRPGRPEPTDWDSDHVDLKWDPPLSDGGAPIEEYQIEKRTKYGRWEPAIT 2922
Query: 65 VPAGETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAPRIDRSTLNDV 124
VP G+T+ TVP L E Y+F+V AVN GP + S + ++AKP+NL P IDR L ++
Sbjct: 2923 VPGGQTTATVPDLTPNEEYEFRVVAVNKGGPSDPSDASKAVIAKPRNLKPHIDRDALKNL 2982
Query: 125 KIKAGQSFSFDVKEFRELSYT-------KSPLRALG-VRANSTKGWVKLSEPFLNHGWSI 176
IKAGQS SFDV E + T +R G V+ ++ + KL + G S
Sbjct: 2983 TIKAGQSISFDVPVSGEPAPTVTWHWPDNREIRNGGRVKLDNPEYQSKLVVKQMERGDSG 3042
Query: 177 NGQVCQIGGRADVQTTKSETVLDIPF-------CSRSDTGHYSLT-----------LENN 218
+ + + + T V+D P S H +L +EN
Sbjct: 3043 TFTIKAVNANGEDEATVKINVIDKPTSPNGPLDVSDVHGDHVTLNWRAPDDDGGIPIENY 3102
Query: 219 L--------GTATASAHVTGTEFTD--NNVHEGKAYEYRVSAVNAAGTEKPKISLDALIG 268
+ G +A V G + T + + G Y++RV+AVNA G P + +
Sbjct: 3103 VIEKYDTASGRWVPAAKVAGDKTTAVVDGLIPGHEYKFRVAAVNAEGESDPLETFGTTLA 3162
Query: 269 KRIKEFVTSTTA-----------SLNIKNSVRKDSGI----YKIEAKNDYGIDMADIEVV 313
K + T A L K D G Y +E K+++ D+ V
Sbjct: 3163 KDPFDKPGKTNAPEITDWDKDHVDLEWKPPA-NDGGAPIEEYVVEMKDEFSPFWNDVAHV 3221
Query: 314 VVSKPGPPTGPIDYTTVTPESVSMSWKPPV---DDGGTPITGA---PKITSDLSIRDMTV 367
+ G + + + K + D + + A P + SI+++ V
Sbjct: 3222 PAGQTNATVGNLKEGSKYEFRIRAKNKAGLGDPSDSASAVAKARNVPPVIDRNSIQEIKV 3281
Query: 368 LAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSY 427
AG++F++ +P SG P PT WT G V D R+K + +T + K A R +D+G+Y
Sbjct: 3282 KAGQDFSLNIPVSGEPTPTITWTFEGTPVESDDRMKLNNEDGKTKFHVKRALR-SDTGTY 3340
Query: 428 TIQLVNTVGSDSASCKVYVVDKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVV 487
I+ N G+D+A KV V+D PS P+GPLDV++I + C L+WK P DDGG+ I++YV+
Sbjct: 3341 IIKAENENGTDTAEVKVTVLDHPSSPRGPLDVTNIVKDGCDLAWKEPEDDGGAEISHYVI 3400
Query: 488 EKYESATG 495
EK ++ATG
Sbjct: 3401 EKQDAATG 3408
|
Source: Caenorhabditis elegans Species: Caenorhabditis elegans Genus: Caenorhabditis Family: Rhabditidae Order: Rhabditida Class: Chromadorea Phylum: Nematoda Superkingdom: Eukaryota |
| >gi|380026625|ref|XP_003697047.1| PREDICTED: LOW QUALITY PROTEIN: twitchin-like [Apis florea] | Back alignment and taxonomy information |
|---|
Score = 258 bits (658), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 189/580 (32%), Positives = 274/580 (47%), Gaps = 119/580 (20%)
Query: 1 MDHSVLIKNPFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWE 60
MD ++ K+P+D+P KP ATDWDKD VDL+WTPP DGGSPITGY++E K + G WE
Sbjct: 5199 MD-TITAKDPYDKPDKPGTPVATDWDKDRVDLEWTPPKKDGGSPITGYIIEKKPRFGQWE 5257
Query: 61 KAVVVPAGETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAPRIDRST 120
KA+ + +TS VP L+EG+ Y+F+V AVN AGPGE S+ ++PI+AKP+ LAP D
Sbjct: 5258 KALEIDGAKTSARVPDLVEGQEYEFRVIAVNKAGPGEPSEASSPIIAKPRFLAPSFDPHA 5317
Query: 121 LNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQV 180
L+D+ ++AGQ ++ + P++A P WS++G V
Sbjct: 5318 LSDLVVRAGQKINYII-----------PIQA---------------SPKPTATWSLDGAV 5351
Query: 181 CQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVTG---------- 230
R ++ TT +ET +IPF RSDTG Y+LTLEN G +ASA VT
Sbjct: 5352 IMADSRHEMYTTSTETTFEIPFSVRSDTGRYTLTLENEHGKFSASARVTVLDRPSPPQKP 5411
Query: 231 ---TEFTDNNVHE--GKAYEYRVSAVNAAGTEKPKISLDALIGKRIKEFVTSTTASLNIK 285
++ T H G + S + EK +S + ++ A L
Sbjct: 5412 LEISKITKEGCHLAWGHPLDDGGSPILHYVIEKMDLSRGTWSDAGMSMILSHEVARL--- 5468
Query: 286 NSVRKDSGIYKIEAKNDYG-IDMADIEVVVVSK-----PGPPTGPIDYTTVTPESVSMSW 339
+ +++++A N G D + +V+K P P P T + V + W
Sbjct: 5469 --THRKEYLFRVKAVNTIGESDPLEASKSIVAKNEFDEPDAPGKP-QITDWDRDHVDLQW 5525
Query: 340 KPPVDDGGTPIT------------------GAPKITSDLSIRDMTVLAGEEF-TITVPFS 380
P DGG+PIT P ++ ++ D+T EF I V +
Sbjct: 5526 PAPSSDGGSPITEYIVQKKEKGSPYWVNAIHVPPNQTNTTVPDLTEGQEYEFRVIAVNAA 5585
Query: 381 GRPKP-------------------TPI--------------------------WTVNGDE 395
G+ +P TP+ WTV E
Sbjct: 5586 GQSEPSEPSDLVTAKPRYLAPKIKTPLQDIRVKAGLIFHVDIDFIGEPTPEVTWTVGSKE 5645
Query: 396 VSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQG 455
+ D R + TI +A+R +DSG Y + L N+ G D S +V V+D+P PP+G
Sbjct: 5646 LESDKRTTVTSIGYHTIVHTVNAQR-SDSGLYHLLLKNSSGIDEGSFQVIVLDRPGPPEG 5704
Query: 456 PLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATG 495
PL +IT +S +LSWKPP D+GGS IT Y++EK + G
Sbjct: 5705 PLQYEEITSQSVTLSWKPPKDNGGSEITGYIIEKRDLTHG 5744
|
Source: Apis florea Species: Apis florea Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|392901026|ref|NP_001255603.1| Protein UNC-22, isoform d [Caenorhabditis elegans] gi|313004686|emb|CBK19522.1| Protein UNC-22, isoform d [Caenorhabditis elegans] | Back alignment and taxonomy information |
|---|
Score = 257 bits (657), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 183/548 (33%), Positives = 270/548 (49%), Gaps = 59/548 (10%)
Query: 5 VLIKNPFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVV 64
+L KNPFD P +P E TDWD DHVDL+W PP+SDGG+PI Y +E + K G WE A+
Sbjct: 2697 ILAKNPFDRPDRPGRPEPTDWDSDHVDLKWDPPLSDGGAPIEEYQIEKRTKYGRWEPAIT 2756
Query: 65 VPAGETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAPRIDRSTLNDV 124
VP G+T+ TVP L E Y+F+V AVN GP + S + ++AKP+NL P IDR L ++
Sbjct: 2757 VPGGQTTATVPDLTPNEEYEFRVVAVNKGGPSDPSDASKAVIAKPRNLKPHIDRDALKNL 2816
Query: 125 KIKAGQSFSFDVKEFRELSYT-------KSPLRALG-VRANSTKGWVKLSEPFLNHGWSI 176
IKAGQS SFDV E + T +R G V+ ++ + KL + G S
Sbjct: 2817 TIKAGQSISFDVPVSGEPAPTVTWHWPDNREIRNGGRVKLDNPEYQSKLVVKQMERGDSG 2876
Query: 177 NGQVCQIGGRADVQTTKSETVLDIPF-------CSRSDTGHYSLT-----------LENN 218
+ + + + T V+D P S H +L +EN
Sbjct: 2877 TFTIKAVNANGEDEATVKINVIDKPTSPNGPLDVSDVHGDHVTLNWRAPDDDGGIPIENY 2936
Query: 219 L--------GTATASAHVTGTEFTD--NNVHEGKAYEYRVSAVNAAGTEKPKISLDALIG 268
+ G +A V G + T + + G Y++RV+AVNA G P + +
Sbjct: 2937 VIEKYDTASGRWVPAAKVAGDKTTAVVDGLIPGHEYKFRVAAVNAEGESDPLETFGTTLA 2996
Query: 269 KRIKEFVTSTTA-----------SLNIKNSVRKDSGI----YKIEAKNDYGIDMADIEVV 313
K + T A L K D G Y +E K+++ D+ V
Sbjct: 2997 KDPFDKPGKTNAPEITDWDKDHVDLEWKPPA-NDGGAPIEEYVVEMKDEFSPFWNDVAHV 3055
Query: 314 VVSKPGPPTGPIDYTTVTPESVSMSWKPPV---DDGGTPITGA---PKITSDLSIRDMTV 367
+ G + + + K + D + + A P + SI+++ V
Sbjct: 3056 PAGQTNATVGNLKEGSKYEFRIRAKNKAGLGDPSDSASAVAKARNVPPVIDRNSIQEIKV 3115
Query: 368 LAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSY 427
AG++F++ +P SG P PT WT G V D R+K + +T + K A R +D+G+Y
Sbjct: 3116 KAGQDFSLNIPVSGEPTPTITWTFEGTPVESDDRMKLNNEDGKTKFHVKRALR-SDTGTY 3174
Query: 428 TIQLVNTVGSDSASCKVYVVDKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVV 487
I+ N G+D+A KV V+D PS P+GPLDV++I + C L+WK P DDGG+ I++YV+
Sbjct: 3175 IIKAENENGTDTAEVKVTVLDHPSSPRGPLDVTNIVKDGCDLAWKEPEDDGGAEISHYVI 3234
Query: 488 EKYESATG 495
EK ++ATG
Sbjct: 3235 EKQDAATG 3242
|
Source: Caenorhabditis elegans Species: Caenorhabditis elegans Genus: Caenorhabditis Family: Rhabditidae Order: Rhabditida Class: Chromadorea Phylum: Nematoda Superkingdom: Eukaryota |
| >gi|392901030|ref|NP_001255604.1| Protein UNC-22, isoform e [Caenorhabditis elegans] gi|313004687|emb|CBK19523.1| Protein UNC-22, isoform e [Caenorhabditis elegans] | Back alignment and taxonomy information |
|---|
Score = 257 bits (657), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 183/548 (33%), Positives = 270/548 (49%), Gaps = 59/548 (10%)
Query: 5 VLIKNPFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVV 64
+L KNPFD P +P E TDWD DHVDL+W PP+SDGG+PI Y +E + K G WE A+
Sbjct: 2140 ILAKNPFDRPDRPGRPEPTDWDSDHVDLKWDPPLSDGGAPIEEYQIEKRTKYGRWEPAIT 2199
Query: 65 VPAGETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAPRIDRSTLNDV 124
VP G+T+ TVP L E Y+F+V AVN GP + S + ++AKP+NL P IDR L ++
Sbjct: 2200 VPGGQTTATVPDLTPNEEYEFRVVAVNKGGPSDPSDASKAVIAKPRNLKPHIDRDALKNL 2259
Query: 125 KIKAGQSFSFDVKEFRELSYT-------KSPLRALG-VRANSTKGWVKLSEPFLNHGWSI 176
IKAGQS SFDV E + T +R G V+ ++ + KL + G S
Sbjct: 2260 TIKAGQSISFDVPVSGEPAPTVTWHWPDNREIRNGGRVKLDNPEYQSKLVVKQMERGDSG 2319
Query: 177 NGQVCQIGGRADVQTTKSETVLDIPF-------CSRSDTGHYSLT-----------LENN 218
+ + + + T V+D P S H +L +EN
Sbjct: 2320 TFTIKAVNANGEDEATVKINVIDKPTSPNGPLDVSDVHGDHVTLNWRAPDDDGGIPIENY 2379
Query: 219 L--------GTATASAHVTGTEFTD--NNVHEGKAYEYRVSAVNAAGTEKPKISLDALIG 268
+ G +A V G + T + + G Y++RV+AVNA G P + +
Sbjct: 2380 VIEKYDTASGRWVPAAKVAGDKTTAVVDGLIPGHEYKFRVAAVNAEGESDPLETFGTTLA 2439
Query: 269 KRIKEFVTSTTA-----------SLNIKNSVRKDSGI----YKIEAKNDYGIDMADIEVV 313
K + T A L K D G Y +E K+++ D+ V
Sbjct: 2440 KDPFDKPGKTNAPEITDWDKDHVDLEWKPPA-NDGGAPIEEYVVEMKDEFSPFWNDVAHV 2498
Query: 314 VVSKPGPPTGPIDYTTVTPESVSMSWKPPV---DDGGTPITGA---PKITSDLSIRDMTV 367
+ G + + + K + D + + A P + SI+++ V
Sbjct: 2499 PAGQTNATVGNLKEGSKYEFRIRAKNKAGLGDPSDSASAVAKARNVPPVIDRNSIQEIKV 2558
Query: 368 LAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSY 427
AG++F++ +P SG P PT WT G V D R+K + +T + K A R +D+G+Y
Sbjct: 2559 KAGQDFSLNIPVSGEPTPTITWTFEGTPVESDDRMKLNNEDGKTKFHVKRALR-SDTGTY 2617
Query: 428 TIQLVNTVGSDSASCKVYVVDKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVV 487
I+ N G+D+A KV V+D PS P+GPLDV++I + C L+WK P DDGG+ I++YV+
Sbjct: 2618 IIKAENENGTDTAEVKVTVLDHPSSPRGPLDVTNIVKDGCDLAWKEPEDDGGAEISHYVI 2677
Query: 488 EKYESATG 495
EK ++ATG
Sbjct: 2678 EKQDAATG 2685
|
Source: Caenorhabditis elegans Species: Caenorhabditis elegans Genus: Caenorhabditis Family: Rhabditidae Order: Rhabditida Class: Chromadorea Phylum: Nematoda Superkingdom: Eukaryota |
| >gi|392901028|ref|NP_001122835.2| Protein UNC-22, isoform c [Caenorhabditis elegans] gi|371570818|emb|CAM35838.2| Protein UNC-22, isoform c [Caenorhabditis elegans] | Back alignment and taxonomy information |
|---|
Score = 257 bits (657), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 183/548 (33%), Positives = 270/548 (49%), Gaps = 59/548 (10%)
Query: 5 VLIKNPFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVV 64
+L KNPFD P +P E TDWD DHVDL+W PP+SDGG+PI Y +E + K G WE A+
Sbjct: 2324 ILAKNPFDRPDRPGRPEPTDWDSDHVDLKWDPPLSDGGAPIEEYQIEKRTKYGRWEPAIT 2383
Query: 65 VPAGETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAPRIDRSTLNDV 124
VP G+T+ TVP L E Y+F+V AVN GP + S + ++AKP+NL P IDR L ++
Sbjct: 2384 VPGGQTTATVPDLTPNEEYEFRVVAVNKGGPSDPSDASKAVIAKPRNLKPHIDRDALKNL 2443
Query: 125 KIKAGQSFSFDVKEFRELSYT-------KSPLRALG-VRANSTKGWVKLSEPFLNHGWSI 176
IKAGQS SFDV E + T +R G V+ ++ + KL + G S
Sbjct: 2444 TIKAGQSISFDVPVSGEPAPTVTWHWPDNREIRNGGRVKLDNPEYQSKLVVKQMERGDSG 2503
Query: 177 NGQVCQIGGRADVQTTKSETVLDIPF-------CSRSDTGHYSLT-----------LENN 218
+ + + + T V+D P S H +L +EN
Sbjct: 2504 TFTIKAVNANGEDEATVKINVIDKPTSPNGPLDVSDVHGDHVTLNWRAPDDDGGIPIENY 2563
Query: 219 L--------GTATASAHVTGTEFTD--NNVHEGKAYEYRVSAVNAAGTEKPKISLDALIG 268
+ G +A V G + T + + G Y++RV+AVNA G P + +
Sbjct: 2564 VIEKYDTASGRWVPAAKVAGDKTTAVVDGLIPGHEYKFRVAAVNAEGESDPLETFGTTLA 2623
Query: 269 KRIKEFVTSTTA-----------SLNIKNSVRKDSGI----YKIEAKNDYGIDMADIEVV 313
K + T A L K D G Y +E K+++ D+ V
Sbjct: 2624 KDPFDKPGKTNAPEITDWDKDHVDLEWKPPA-NDGGAPIEEYVVEMKDEFSPFWNDVAHV 2682
Query: 314 VVSKPGPPTGPIDYTTVTPESVSMSWKPPV---DDGGTPITGA---PKITSDLSIRDMTV 367
+ G + + + K + D + + A P + SI+++ V
Sbjct: 2683 PAGQTNATVGNLKEGSKYEFRIRAKNKAGLGDPSDSASAVAKARNVPPVIDRNSIQEIKV 2742
Query: 368 LAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSY 427
AG++F++ +P SG P PT WT G V D R+K + +T + K A R +D+G+Y
Sbjct: 2743 KAGQDFSLNIPVSGEPTPTITWTFEGTPVESDDRMKLNNEDGKTKFHVKRALR-SDTGTY 2801
Query: 428 TIQLVNTVGSDSASCKVYVVDKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVV 487
I+ N G+D+A KV V+D PS P+GPLDV++I + C L+WK P DDGG+ I++YV+
Sbjct: 2802 IIKAENENGTDTAEVKVTVLDHPSSPRGPLDVTNIVKDGCDLAWKEPEDDGGAEISHYVI 2861
Query: 488 EKYESATG 495
EK ++ATG
Sbjct: 2862 EKQDAATG 2869
|
Source: Caenorhabditis elegans Species: Caenorhabditis elegans Genus: Caenorhabditis Family: Rhabditidae Order: Rhabditida Class: Chromadorea Phylum: Nematoda Superkingdom: Eukaryota |
| >gi|392901023|ref|NP_001255602.1| Protein UNC-22, isoform g [Caenorhabditis elegans] gi|371570820|emb|CCF23389.1| Protein UNC-22, isoform g [Caenorhabditis elegans] | Back alignment and taxonomy information |
|---|
Score = 257 bits (657), Expect = 9e-66, Method: Compositional matrix adjust.
Identities = 183/548 (33%), Positives = 270/548 (49%), Gaps = 59/548 (10%)
Query: 5 VLIKNPFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVV 64
+L KNPFD P +P E TDWD DHVDL+W PP+SDGG+PI Y +E + K G WE A+
Sbjct: 2553 ILAKNPFDRPDRPGRPEPTDWDSDHVDLKWDPPLSDGGAPIEEYQIEKRTKYGRWEPAIT 2612
Query: 65 VPAGETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAPRIDRSTLNDV 124
VP G+T+ TVP L E Y+F+V AVN GP + S + ++AKP+NL P IDR L ++
Sbjct: 2613 VPGGQTTATVPDLTPNEEYEFRVVAVNKGGPSDPSDASKAVIAKPRNLKPHIDRDALKNL 2672
Query: 125 KIKAGQSFSFDVKEFRELSYT-------KSPLRALG-VRANSTKGWVKLSEPFLNHGWSI 176
IKAGQS SFDV E + T +R G V+ ++ + KL + G S
Sbjct: 2673 TIKAGQSISFDVPVSGEPAPTVTWHWPDNREIRNGGRVKLDNPEYQSKLVVKQMERGDSG 2732
Query: 177 NGQVCQIGGRADVQTTKSETVLDIPF-------CSRSDTGHYSLT-----------LENN 218
+ + + + T V+D P S H +L +EN
Sbjct: 2733 TFTIKAVNANGEDEATVKINVIDKPTSPNGPLDVSDVHGDHVTLNWRAPDDDGGIPIENY 2792
Query: 219 L--------GTATASAHVTGTEFTD--NNVHEGKAYEYRVSAVNAAGTEKPKISLDALIG 268
+ G +A V G + T + + G Y++RV+AVNA G P + +
Sbjct: 2793 VIEKYDTASGRWVPAAKVAGDKTTAVVDGLIPGHEYKFRVAAVNAEGESDPLETFGTTLA 2852
Query: 269 KRIKEFVTSTTA-----------SLNIKNSVRKDSGI----YKIEAKNDYGIDMADIEVV 313
K + T A L K D G Y +E K+++ D+ V
Sbjct: 2853 KDPFDKPGKTNAPEITDWDKDHVDLEWKPPA-NDGGAPIEEYVVEMKDEFSPFWNDVAHV 2911
Query: 314 VVSKPGPPTGPIDYTTVTPESVSMSWKPPV---DDGGTPITGA---PKITSDLSIRDMTV 367
+ G + + + K + D + + A P + SI+++ V
Sbjct: 2912 PAGQTNATVGNLKEGSKYEFRIRAKNKAGLGDPSDSASAVAKARNVPPVIDRNSIQEIKV 2971
Query: 368 LAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSY 427
AG++F++ +P SG P PT WT G V D R+K + +T + K A R +D+G+Y
Sbjct: 2972 KAGQDFSLNIPVSGEPTPTITWTFEGTPVESDDRMKLNNEDGKTKFHVKRALR-SDTGTY 3030
Query: 428 TIQLVNTVGSDSASCKVYVVDKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVV 487
I+ N G+D+A KV V+D PS P+GPLDV++I + C L+WK P DDGG+ I++YV+
Sbjct: 3031 IIKAENENGTDTAEVKVTVLDHPSSPRGPLDVTNIVKDGCDLAWKEPEDDGGAEISHYVI 3090
Query: 488 EKYESATG 495
EK ++ATG
Sbjct: 3091 EKQDAATG 3098
|
Source: Caenorhabditis elegans Species: Caenorhabditis elegans Genus: Caenorhabditis Family: Rhabditidae Order: Rhabditida Class: Chromadorea Phylum: Nematoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 516 | ||||||
| FB|FBgn0005666 | 8933 | bt "bent" [Drosophila melanoga | 0.271 | 0.015 | 0.645 | 2e-113 | |
| WB|WBGene00006759 | 7158 | unc-22 [Caenorhabditis elegans | 0.627 | 0.045 | 0.335 | 1.7e-71 | |
| ZFIN|ZDB-GENE-030616-413 | 28 | ttnb "titin b" [Danio rerio (t | 0.548 | 10.10 | 0.311 | 6.5e-47 | |
| MGI|MGI:98864 | 35 | Ttn "titin" [Mus musculus (tax | 0.662 | 9.771 | 0.284 | 1.7e-48 | |
| UNIPROTKB|Q8WZ42 | 34 | TTN "Titin" [Homo sapiens (tax | 0.633 | 9.617 | 0.316 | 3.1e-55 | |
| UNIPROTKB|F1N757 | 34 | F1N757 "Uncharacterized protei | 0.608 | 9.235 | 0.292 | 2.2e-51 | |
| UNIPROTKB|F1PV45 | 35 | F1PV45 "Uncharacterized protei | 0.662 | 9.771 | 0.289 | 3.5e-48 | |
| ZFIN|ZDB-GENE-030113-2 | 32 | ttna "titin a" [Danio rerio (t | 0.315 | 5.093 | 0.391 | 7.3e-51 | |
| UNIPROTKB|Q8T6S9 | 350 | bt "Bent" [Drosophila simulans | 0.257 | 0.38 | 0.544 | 5.8e-34 | |
| UNIPROTKB|F1PWA8 | 1178 | MYBPC1 "Uncharacterized protei | 0.257 | 0.112 | 0.392 | 4.2e-16 |
| FB|FBgn0005666 bt "bent" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 487 (176.5 bits), Expect = 2.0e-113, Sum P(5) = 2.0e-113
Identities = 91/141 (64%), Positives = 115/141 (81%)
Query: 353 APKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTI 412
APKITSDLSIRDMTV+AG+EF ITVP+ P+PT W++NG EV P RIKF++++ ++
Sbjct: 6854 APKITSDLSIRDMTVIAGDEFRITVPYHASPRPTASWSLNGLEVIPGERIKFDSNDYASM 6913
Query: 413 YRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQGPLDVSDITPESCSLSWK 472
Y NKSAKR ++GSYTI L N GSD+ASC V VVD+P PPQGPL+ DITP++C+L+WK
Sbjct: 6914 YYNKSAKR-DETGSYTITLTNNKGSDTASCHVTVVDRPLPPQGPLNAYDITPDTCTLAWK 6972
Query: 473 PPLDDGGSPITNYVVEKYESA 493
PLDDGGSPITNYVVEK +++
Sbjct: 6973 TPLDDGGSPITNYVVEKLDNS 6993
|
|
| WB|WBGene00006759 unc-22 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
Score = 484 (175.4 bits), Expect = 1.7e-71, Sum P(2) = 1.7e-71
Identities = 123/367 (33%), Positives = 180/367 (49%)
Query: 2 DHSVLIKNPFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEK 61
DH+++ KNPFDEP PTD+ DWDKDHVDL+W PP +DGG+PI Y+VE KDK G+W +
Sbjct: 3745 DHAIVAKNPFDEPDAPTDVTPVDWDKDHVDLEWKPPANDGGAPIDAYIVEKKDKFGDWVE 3804
Query: 62 AVVVPAGETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAPRIDRSTL 121
V T T L GETYQF+V+AVN AGPG+ S PT +VAKP+ +AP+++ + L
Sbjct: 3805 CARVDGKTTKATADNLTPGETYQFRVKAVNKAGPGKPSDPTGNVVAKPRRMAPKLNLAGL 3864
Query: 122 NDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVC 181
D++IKAG D+ + +G EP W N
Sbjct: 3865 LDLRIKAGTPIKLDI---------------------AFEG-----EPAPVAKWKANDATI 3898
Query: 182 QIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVT-----GTE---F 233
G RADV T + + + I R DTG Y + +EN G TA +VT GT
Sbjct: 3899 DTGARADVTNTPTSSAIHIFSAVRGDTGVYKIIVENEHGKDTAQCNVTVLDVPGTPEGPL 3958
Query: 234 TDNNVH-EGKAYEYRVSAVNAAGTEKPKISLDALIGKR--IKEFVTSTTASLNIKNSVRK 290
+ +H EG ++ N GT+ ++ + R +E T + + V
Sbjct: 3959 KIDEIHKEGCTLNWKPPTDNG-GTDVLHYIVEKMDTSRGTWQEVGTFPDCTAKVNKLVPG 4017
Query: 291 DSGIYKIEAKNDYGIDMA-DIEVVVVSKPG-PPTGPIDYTTVTP---ESVSMSWKPPVDD 345
++++A N G + E +++K P+D VT + + + W P ++
Sbjct: 4018 KEYAFRVKAVNLQGESKPLEAEEPIIAKNQFDVPDPVDKPEVTDWDKDRIDIKWNPTANN 4077
Query: 346 GGTPITG 352
GG P+TG
Sbjct: 4078 GGAPVTG 4084
|
|
| ZFIN|ZDB-GENE-030616-413 ttnb "titin b" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 311 (114.5 bits), Expect = 6.5e-47, Sum P(3) = 6.5e-47
Identities = 99/318 (31%), Positives = 158/318 (49%)
Query: 222 ATASAHVTGTEFTDNNVHEGKAYEYRVSAVNAAGTEKP-------KISLDALI-GKRIKE 273
AT +++ T +T + + EG Y +RV A N G P K+S L GK +
Sbjct: 17718 ATVNSNCHKTNWTVDQLQEGCNYYFRVLAENEYGIGLPIETGESVKVSEKPLPPGKITLQ 17777
Query: 274 FVTSTTASLNIKNSVRKDSG----IYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTT 329
VT TT +L+ + D G Y +E ++ + +V V P I +
Sbjct: 17778 DVTKTTVTLSWEKP-EHDGGSRVVAYVVEMQSKGSEKWSQAVIVKV-----PEAVI--SG 17829
Query: 330 VTPESVSMSWKPPVDDGGT--PIT-GAPKITSDL----SIRDM----TVLAGEEFTITVP 378
++P M ++ GT P G P I DL S++ + TVLAGE+ TI +P
Sbjct: 17830 LSPGEEYMFRVSARNEKGTSDPRQIGVPVIAKDLVIAPSVKMLFSTFTVLAGEDLTIDIP 17889
Query: 379 FSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSD 438
++ RPK T W + + R+ F +++ + K A R D G Y+I+L NT G
Sbjct: 17890 YNARPKATISWIKDAVPLKRTTRVNFSSTDKELNLVIKEACR-DDVGQYSIKLSNTAGET 17948
Query: 439 SASCKVYVVDKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATGVSD 498
+ + V+DKP PP GP++V ++T +S ++SWKPP DGG I NY+VEK +++T
Sbjct: 17949 TVDIGIVVLDKPGPPTGPVNVDEVTSDSITVSWKPPEYDGGCTINNYIVEKRDTSTTNWQ 18008
Query: 499 LF---ISKSEVKTGSLMT 513
+ ++++++K G L T
Sbjct: 18009 IVAGNLARTQIKAGRLKT 18026
|
|
| MGI|MGI:98864 Ttn "titin" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 320 (117.7 bits), Expect = 1.7e-48, Sum P(3) = 1.7e-48
Identities = 113/397 (28%), Positives = 176/397 (44%)
Query: 9 NPFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTG-NWEKAVVVPA 67
+P PG P DL D DK V L W P DGGSPITGY+VE +++ +W K V
Sbjct: 19194 DPLHPPGPPKDLHHVDVDKTEVSLVWNKPDRDGGSPITGYLVEYQEEGDKDWIKFKTVK- 19252
Query: 68 GETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAPRI--DRSTLNDVK 125
C V GL +G+TY+F+V+A N G G T PI + K + P + D + +
Sbjct: 19253 -NLDCVVTGLQQGKTYRFRVKAENIIGLG-LPDTTIPIECQEKLVPPSVELDVKLIEGLV 19310
Query: 126 IKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGG 185
+KAG + F P GV + K W+ +G +
Sbjct: 19311 VKAGTTVRF-------------PAIIRGVPVPTAK-------------WTTDGTEIKTDD 19344
Query: 186 RADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVT-----GTEFTDNNVHE 240
V+T +VL I C R DTG Y LT+ N GT T + H+T G N+ +
Sbjct: 19345 HYTVETDSFSSVLTIKNCLRKDTGEYQLTVSNAAGTKTVAVHLTVLDVPGPPTGPINILD 19404
Query: 241 GKAYEYRVSAVNAAGTEKPKISLDALIGKRIKE-----FVTSTTASLNIK-NSVRKDSG- 293
EY + + ++ ++ K+ V++ ++ L +K ++K
Sbjct: 19405 VTP-EYMTISWQPPKDDGGSPVINYIVEKQDTRKGTWGVVSAGSSKLKLKVPHLQKGCEY 19463
Query: 294 IYKIEAKNDYGID--MADIEVVVVSK---PGPPTGPIDYTTVTPESVSMSWKPPVDDGGT 348
+++++A+N G+ + I V K P PP P+ T +T + ++SW P DGG+
Sbjct: 19464 VFRVKAENKMGVGPPLDSIPTVAKHKFSPPSPPGKPV-VTDITENAATVSWTLPKSDGGS 19522
Query: 349 PITG----APKITSDLSIRDMTVLAGEEFTITVPFSG 381
PITG +IT + T +A +F +T + G
Sbjct: 19523 PITGYYVERREITGKWVRVNKTPIADLKFRVTGLYEG 19559
|
|
| UNIPROTKB|Q8WZ42 TTN "Titin" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 349 (127.9 bits), Expect = 3.1e-55, Sum P(3) = 3.1e-55
Identities = 113/357 (31%), Positives = 167/357 (46%)
Query: 5 VLIKNPFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGN-WEKAV 63
++ ++PFD P P D D V L WT P GGSPITGY +E K++ W++A
Sbjct: 21094 IVARHPFDVPDAPPPPNIVDVRHDSVSLTWTDPKKTGGSPITGYHLEFKERNSLLWKRAN 21153
Query: 64 VVPAGETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAPRIDRSTLND 123
P V GL EG Y+F+V A+N AG G+ S P+ P+VA L P ID +
Sbjct: 21154 KTPIRMRDFKVTGLTEGLEYEFRVMAINLAGVGKPSLPSEPVVA----LDP-IDPPGKPE 21208
Query: 124 VKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQI 183
V S + E + K + R +K W+K NH +N C
Sbjct: 21209 VINITRNSVTLIWTEPKYDGGHKLTGYIVEKRDLPSKSWMKA-----NH---VNVPECAF 21260
Query: 184 GGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVTGTEFTDNNVHEG-- 241
V+ K E + +++ G S E+ + T D + +G
Sbjct: 21261 TVTDLVEGGKYEFRIR----AKNTAGAISAPSESTETIICKDEYEAPTIVLDPTIKDGLT 21316
Query: 242 -KAYEYRV-SAVNAAGTEKPKISLDALIGKRIKEF----VTSTTAS--LNIKNSVRKDSG 293
KA + V +A++ G PK S GK I+ +TST S L IK + RKD+G
Sbjct: 21317 IKAGDTIVLNAISILGKPLPKSSWSKA-GKDIRPSDITQITSTPTSSMLTIKYATRKDAG 21375
Query: 294 IYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPI 350
Y I A N +G + ++V V+ PGPP GP++ + V+ E +++W PP++DGG+PI
Sbjct: 21376 EYTITATNPFGTKVEHVKVTVLDVPGPP-GPVEISNVSAEKATLTWTPPLEDGGSPI 21431
|
|
| UNIPROTKB|F1N757 F1N757 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 316 (116.3 bits), Expect = 2.2e-51, Sum P(3) = 2.2e-51
Identities = 106/363 (29%), Positives = 163/363 (44%)
Query: 9 NPFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDK-TGNWEKAVVVPA 67
+P PG P +L D DK V L W P DGGSPITGY+VE +++ T +W K V
Sbjct: 18347 DPLHPPGPPKNLHHVDVDKTEVSLVWNKPDRDGGSPITGYLVEYQEEGTPDWIKFKTVT- 18405
Query: 68 GETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAPRI--DRSTLNDVK 125
+C V GL +G+TY+F+V+A N G G T PI + K + P + D + +
Sbjct: 18406 -NLACVVTGLQQGKTYRFRVKAENIVGLG-LPDTTIPIECQEKLVPPSVELDVKLIEGLV 18463
Query: 126 IKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGG 185
+KAG + F P GV + K W+ +G +
Sbjct: 18464 VKAGTTVRF-------------PAIIRGVPIPTAK-------------WTTDGNEIKTDE 18497
Query: 186 RADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVT-----GTEFTDNNVHE 240
V+T +VL I C R DTG Y +T+ N GT T + H+T G N+ E
Sbjct: 18498 HYTVETDNFSSVLTIKNCLRKDTGEYQITVSNAAGTKTVAVHLTVLDVPGPPTGPINILE 18557
Query: 241 GKAYEYRVSAV---NAAGTEKPKISLDALIGKRIKEFVTSTTAS---LNIKNSVRKDSGI 294
+S + + G+ ++ K+ V S+ +S L + + + +
Sbjct: 18558 VTPEYMTISWLPPKDDGGSPVINYIVEKKDTKKDTWGVVSSGSSKTKLKVPHLQKGYEYV 18617
Query: 295 YKIEAKNDYGIDMADIEVVVVSK-----PGPPTGPIDYTTVTPESVSMSWKPPVDDGGTP 349
++++A+N GI V V+K P PP P+ T +T + +++W P DGG+P
Sbjct: 18618 FRVKAENKIGIGPPLDSVPTVAKHKFSPPSPPGKPV-VTDITENAATVAWTLPKSDGGSP 18676
Query: 350 ITG 352
ITG
Sbjct: 18677 ITG 18679
|
|
| UNIPROTKB|F1PV45 F1PV45 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 315 (115.9 bits), Expect = 3.5e-48, Sum P(2) = 3.5e-48
Identities = 115/397 (28%), Positives = 176/397 (44%)
Query: 9 NPFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDK-TGNWEKAVVVPA 67
+P PG P DL D DK V L W P DGGSPITGY+VE +++ T +W K V
Sbjct: 19160 DPLHPPGPPKDLHHVDVDKTEVSLVWNKPDRDGGSPITGYLVEYQEEGTEDWIKFKTVTN 19219
Query: 68 GETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAPRI--DRSTLNDVK 125
E C V GL +G+TY+F+V+A N G G T PI + K + P + D + +
Sbjct: 19220 LE--CVVTGLQQGKTYRFRVKAENIVGLG-LPDTTIPIECQEKLVPPSVELDVKLIEGLV 19276
Query: 126 IKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGG 185
+KAG + F P GV + K W+ +G +
Sbjct: 19277 VKAGTTVRF-------------PAIIRGVPVPTAK-------------WTTDGTEIKTDE 19310
Query: 186 RADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVT-----GTEFTDNNVHE 240
V+T +VL I C R DTG Y +T+ N G+ T + H+T G N+ +
Sbjct: 19311 HYTVETDSFSSVLTIKNCLRRDTGEYQITVSNAAGSKTVAVHLTVLDVPGPPTGPINILD 19370
Query: 241 GKAYEYRVSAVNAAGTEKPKISLDALIGKRI--KEF--VTSTTAS---LNIKNSVRKDSG 293
EY + + ++ ++ K+ K+ V S+ +S L I + +
Sbjct: 19371 VTP-EYMTISWQPPKDDGGSPVINYIVEKQDTRKDTWGVVSSGSSKTKLKIPHLQKGCEY 19429
Query: 294 IYKIEAKNDYGIDMADIEVVVVSK-----PGPPTGPIDYTTVTPESVSMSWKPPVDDGGT 348
I+++ A+N G+ V+K P PP P+ T +T + ++SW P DGG+
Sbjct: 19430 IFRVRAENKMGVGPPLDSTPTVAKHKFSPPSPPGKPV-VTDITENAATVSWTLPKSDGGS 19488
Query: 349 PITG----APKITSDLSIRDMTVLAGEEFTITVPFSG 381
PITG +IT + T +A +F +T + G
Sbjct: 19489 PITGYYVERREITGKWVRVNKTPIADLKFRVTGLYEG 19525
|
|
| ZFIN|ZDB-GENE-030113-2 ttna "titin a" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 293 (108.2 bits), Expect = 7.3e-51, Sum P(5) = 7.3e-51
Identities = 67/171 (39%), Positives = 96/171 (56%)
Query: 342 PVDDGGTPITGAPKI--TSDLSIRD---MTVLAGEEFTITVPFSGRPKPTPIWTVNGDEV 396
P D + I P+I T+DLS D +T G F I +P SGRP P W + ++
Sbjct: 28261 PRDALASVIIKEPRIEPTADLSSIDKQLITCKTGNSFAIDIPISGRPAPKVTWKLEEMKL 28320
Query: 397 SPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQGP 456
R+ + S+++T K AKR DSG Y + L N GS + + V V+ +P+PP GP
Sbjct: 28321 KETDRVSIKISKDRTTLLVKDAKRG-DSGKYYLTLENAAGSKTFTVTVIVIGRPTPPTGP 28379
Query: 457 LDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATGVSDLFISKSEVK 507
+++S ++ ESC L+W P DDGG+ ITNY+VEK ES G + + S VK
Sbjct: 28380 VEISGVSSESCVLTWGEPSDDGGTDITNYIVEKRES--GSTTWQVVNSSVK 28428
|
|
| UNIPROTKB|Q8T6S9 bt "Bent" [Drosophila simulans (taxid:7240)] | Back alignment and assigned GO terms |
|---|
Score = 369 (135.0 bits), Expect = 5.8e-34, P = 5.8e-34
Identities = 73/134 (54%), Positives = 93/134 (69%)
Query: 4 SVLIKNPFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDK-TGNWEKA 62
+++ KNPFDEP KP D+DK+ VDL+WT P +DGGSPITGYVVE +DK + +WEK
Sbjct: 136 AIIAKNPFDEPTKPGTPTIKDFDKEFVDLEWTRPEADGGSPITGYVVEKRDKFSPDWEKC 195
Query: 63 VVVPAGETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAPRIDRSTLN 122
+ T+ VP LIEG Y+F+VRAVN AGPG S T VA+ KN P+IDR+ ++
Sbjct: 196 AEISDDITNAHVPDLIEGLKYEFRVRAVNKAGPGLPSDATETHVARSKNTPPKIDRNFMS 255
Query: 123 DVKIKAGQSFSFDV 136
D+KIKAG F FDV
Sbjct: 256 DIKIKAGNVFEFDV 269
|
|
| UNIPROTKB|F1PWA8 MYBPC1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 232 (86.7 bits), Expect = 4.2e-16, Sum P(2) = 4.2e-16
Identities = 55/140 (39%), Positives = 77/140 (55%)
Query: 354 PKITSDLSIRD--MTVLAGEEFTITVPFSGRPKPTPIWTVNGDE--VSPDGRIKFETSEN 409
PKI D D +TV+AG + + +P SG P P IW+ D+ + GRI+ E+ +
Sbjct: 553 PKIILDGLDADNTVTVIAGSKLRLEIPISGEPPPKAIWS-RADKAIMEGSGRIRAESYPD 611
Query: 410 QTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQGPLDVSDITPESCSL 469
+ A+R DSG Y I L N G AS K+ VVD P PP P V+D+ + C +
Sbjct: 612 SSTLVIDVAER-DDSGVYHINLKNEAGEAHASIKIKVVDIPDPPVAP-KVTDVGDDWCIM 669
Query: 470 SWKPPLDDGGSPITNYVVEK 489
+W+PP DGGSPI Y +E+
Sbjct: 670 NWEPPAYDGGSPILGYFIER 689
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 516 | |||
| cd00063 | 93 | cd00063, FN3, Fibronectin type 3 domain; One of th | 2e-22 | |
| smart00060 | 83 | smart00060, FN3, Fibronectin type 3 domain | 4e-19 | |
| cd05748 | 74 | cd05748, Ig_Titin_like, Immunoglobulin (Ig)-like d | 3e-17 | |
| pfam00041 | 84 | pfam00041, fn3, Fibronectin type III domain | 2e-15 | |
| pfam07679 | 90 | pfam07679, I-set, Immunoglobulin I-set domain | 1e-10 | |
| cd05748 | 74 | cd05748, Ig_Titin_like, Immunoglobulin (Ig)-like d | 2e-10 | |
| cd05894 | 86 | cd05894, Ig_C5_MyBP-C, C5 immunoglobulin (Ig) doma | 1e-09 | |
| smart00410 | 85 | smart00410, IG_like, Immunoglobulin like | 5e-08 | |
| smart00409 | 85 | smart00409, IG, Immunoglobulin | 5e-08 | |
| cd00063 | 93 | cd00063, FN3, Fibronectin type 3 domain; One of th | 7e-07 | |
| cd05748 | 74 | cd05748, Ig_Titin_like, Immunoglobulin (Ig)-like d | 2e-06 | |
| cd05762 | 98 | cd05762, Ig8_MLCK, Eighth immunoglobulin (Ig)-like | 3e-06 | |
| smart00060 | 83 | smart00060, FN3, Fibronectin type 3 domain | 1e-05 | |
| cd05732 | 96 | cd05732, Ig5_NCAM-1_like, Fifth immunoglobulin (Ig | 2e-04 | |
| smart00410 | 85 | smart00410, IG_like, Immunoglobulin like | 6e-04 | |
| smart00409 | 85 | smart00409, IG, Immunoglobulin | 6e-04 | |
| cd05735 | 88 | cd05735, Ig8_DSCAM, Eight immunoglobulin (Ig) doma | 6e-04 | |
| cd00096 | 74 | cd00096, Ig, Immunoglobulin domain | 0.003 | |
| pfam00041 | 84 | pfam00041, fn3, Fibronectin type III domain | 0.004 |
| >gnl|CDD|238020 cd00063, FN3, Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin | Back alignment and domain information |
|---|
Score = 91.4 bits (227), Expect = 2e-22
Identities = 43/90 (47%), Positives = 54/90 (60%), Gaps = 2/90 (2%)
Query: 14 PGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDK-TGNWEKAVVVPAGETSC 72
P PT+L TD V L WTPP D G PITGYVVE ++K +G+W++ V P ETS
Sbjct: 1 PSPPTNLRVTDVTSTSVTLSWTPP-EDDGGPITGYVVEYREKGSGDWKEVEVTPGSETSY 59
Query: 73 TVPGLIEGETYQFQVRAVNAAGPGEASKPT 102
T+ GL G Y+F+VRAVN G S+
Sbjct: 60 TLTGLKPGTEYEFRVRAVNGGGESPPSESV 89
|
Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases. Length = 93 |
| >gnl|CDD|214495 smart00060, FN3, Fibronectin type 3 domain | Back alignment and domain information |
|---|
Score = 81.5 bits (201), Expect = 4e-19
Identities = 36/84 (42%), Positives = 46/84 (54%), Gaps = 2/84 (2%)
Query: 14 PGKPTDLEATDWDKDHVDLQWTPPISDGG-SPITGYVVEMKDKTGNWEKAVVVPAGETSC 72
P P++L TD V L W PP DG I GY VE +++ W++ V V TS
Sbjct: 1 PSPPSNLRVTDVTSTSVTLSWEPPPDDGITGYIVGYRVEYREEGSEWKE-VNVTPSSTSY 59
Query: 73 TVPGLIEGETYQFQVRAVNAAGPG 96
T+ GL G Y+F+VRAVN AG G
Sbjct: 60 TLTGLKPGTEYEFRVRAVNGAGEG 83
|
One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins. Length = 83 |
| >gnl|CDD|143225 cd05748, Ig_Titin_like, Immunoglobulin (Ig)-like domain of titin and similar proteins | Back alignment and domain information |
|---|
Score = 75.7 bits (187), Expect = 3e-17
Identities = 30/74 (40%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 373 FTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLV 432
+ VP SGRP PT W+ +G + GR++ ET+ + T K+A+R+ DSG YT+ L
Sbjct: 2 VRLEVPISGRPTPTVTWSKDGKPLKLSGRVQIETTASSTSLVIKNAERS-DSGKYTLTLK 60
Query: 433 NTVGSDSASCKVYV 446
N G SA+ V V
Sbjct: 61 NPAGEKSATINVKV 74
|
Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-III domains. Also included in this group are worm twitchin and insect projectin, thick filament proteins of invertebrate muscle, which also have repeated Ig-like and FN-III domains. Length = 74 |
| >gnl|CDD|200951 pfam00041, fn3, Fibronectin type III domain | Back alignment and domain information |
|---|
Score = 70.9 bits (174), Expect = 2e-15
Identities = 36/86 (41%), Positives = 45/86 (52%), Gaps = 3/86 (3%)
Query: 15 GKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDK-TGNWEKAVVVPAGETSCT 73
PT+L TD + L W+PP G PITGY VE + G K + VP TS T
Sbjct: 1 SAPTNLTVTDVTSTSLTLSWSPP--PGNGPITGYEVEYRPVNGGEEWKEITVPGTTTSYT 58
Query: 74 VPGLIEGETYQFQVRAVNAAGPGEAS 99
+ GL G Y+ +V+AVN AG G S
Sbjct: 59 LTGLKPGTEYEVRVQAVNGAGEGPPS 84
|
Length = 84 |
| >gnl|CDD|191810 pfam07679, I-set, Immunoglobulin I-set domain | Back alignment and domain information |
|---|
Score = 57.7 bits (140), Expect = 1e-10
Identities = 25/93 (26%), Positives = 35/93 (37%), Gaps = 3/93 (3%)
Query: 354 PKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIY 413
PK T +D+ V GE T +G P PT W +G + R K
Sbjct: 1 PKFTQ--KPKDVEVQEGESARFTCTVTGDPDPTVSWFKDGQPLRSSDRFKVTYEGGTYTL 58
Query: 414 RNKSAKRATDSGSYTIQLVNTVGSDSASCKVYV 446
+ + D G YT N+ G AS ++ V
Sbjct: 59 TISNVQPD-DEGKYTCVATNSAGEAEASAELTV 90
|
Length = 90 |
| >gnl|CDD|143225 cd05748, Ig_Titin_like, Immunoglobulin (Ig)-like domain of titin and similar proteins | Back alignment and domain information |
|---|
Score = 56.4 bits (137), Expect = 2e-10
Identities = 23/56 (41%), Positives = 35/56 (62%)
Query: 174 WSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVT 229
WS +G+ ++ GR ++TT S T L I RSD+G Y+LTL+N G +A+ +V
Sbjct: 18 WSKDGKPLKLSGRVQIETTASSTSLVIKNAERSDSGKYTLTLKNPAGEKSATINVK 73
|
Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-III domains. Also included in this group are worm twitchin and insect projectin, thick filament proteins of invertebrate muscle, which also have repeated Ig-like and FN-III domains. Length = 74 |
| >gnl|CDD|143302 cd05894, Ig_C5_MyBP-C, C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C) | Back alignment and domain information |
|---|
Score = 54.9 bits (132), Expect = 1e-09
Identities = 31/84 (36%), Positives = 48/84 (57%), Gaps = 4/84 (4%)
Query: 365 MTVLAGEEFTITVPFSGRPKPTPIWTVNGDEV--SPDGRIKFETSENQTIYRNKSAKRAT 422
+ V+AG + + VP SG P PT W+ GD+ +GR++ E+ ++ + + + A+R
Sbjct: 5 IVVVAGNKLRLDVPISGEPAPTVTWS-RGDKAFTETEGRVRVESYKDLSSFVIEGAER-E 62
Query: 423 DSGSYTIQLVNTVGSDSASCKVYV 446
D G YTI + N VG D AS V V
Sbjct: 63 DEGVYTITVTNPVGEDHASLFVKV 86
|
Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain. Length = 86 |
| >gnl|CDD|214653 smart00410, IG_like, Immunoglobulin like | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 5e-08
Identities = 24/85 (28%), Positives = 37/85 (43%), Gaps = 2/85 (2%)
Query: 363 RDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDE-VSPDGRIKFETSENQTIYRNKSAKRA 421
+TV GE T++ SG P P W G + ++ GR S + + +
Sbjct: 2 PSVTVKEGESVTLSCEASGSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTPE 61
Query: 422 TDSGSYTIQLVNTVGSDSASCKVYV 446
DSG+YT N+ GS S+ + V
Sbjct: 62 -DSGTYTCAATNSSGSASSGTTLTV 85
|
IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG. Length = 85 |
| >gnl|CDD|214652 smart00409, IG, Immunoglobulin | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 5e-08
Identities = 24/85 (28%), Positives = 37/85 (43%), Gaps = 2/85 (2%)
Query: 363 RDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDE-VSPDGRIKFETSENQTIYRNKSAKRA 421
+TV GE T++ SG P P W G + ++ GR S + + +
Sbjct: 2 PSVTVKEGESVTLSCEASGSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTPE 61
Query: 422 TDSGSYTIQLVNTVGSDSASCKVYV 446
DSG+YT N+ GS S+ + V
Sbjct: 62 -DSGTYTCAATNSSGSASSGTTLTV 85
|
Length = 85 |
| >gnl|CDD|238020 cd00063, FN3, Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 7e-07
Identities = 27/46 (58%), Positives = 31/46 (67%), Gaps = 2/46 (4%)
Query: 450 PSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATG 495
PSPP L V+D+T S +LSW PP DDGG PIT YVVE E +G
Sbjct: 1 PSPPTN-LRVTDVTSTSVTLSWTPPEDDGG-PITGYVVEYREKGSG 44
|
Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases. Length = 93 |
| >gnl|CDD|143225 cd05748, Ig_Titin_like, Immunoglobulin (Ig)-like domain of titin and similar proteins | Back alignment and domain information |
|---|
Score = 44.9 bits (107), Expect = 2e-06
Identities = 18/40 (45%), Positives = 23/40 (57%)
Query: 275 VTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVV 314
T+++ SL IKN+ R DSG Y + KN G A I V V
Sbjct: 35 TTASSTSLVIKNAERSDSGKYTLTLKNPAGEKSATINVKV 74
|
Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-III domains. Also included in this group are worm twitchin and insect projectin, thick filament proteins of invertebrate muscle, which also have repeated Ig-like and FN-III domains. Length = 74 |
| >gnl|CDD|143239 cd05762, Ig8_MLCK, Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK) | Back alignment and domain information |
|---|
Score = 45.3 bits (107), Expect = 3e-06
Identities = 30/93 (32%), Positives = 42/93 (45%), Gaps = 7/93 (7%)
Query: 364 DMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQ---TIYRNKSAKR 420
DM V AGE + +G T W ++ IK E +EN TI + +
Sbjct: 9 DMKVRAGESVELFCKVTGTQPITCTWMKFRKQIQEGEGIKIENTENSSKLTI----TEGQ 64
Query: 421 ATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPP 453
G YT+++ N +GS A + VVDKP PP
Sbjct: 65 QEHCGCYTLEVENKLGSRQAQVNLTVVDKPDPP 97
|
Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has been suggested MLCK plays a role in cardiomyocyte differentiation and contraction through regulation of nonmuscle myosin II. Length = 98 |
| >gnl|CDD|214495 smart00060, FN3, Fibronectin type 3 domain | Back alignment and domain information |
|---|
Score = 43.4 bits (102), Expect = 1e-05
Identities = 22/44 (50%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Query: 450 PSPPQGPLDVSDITPESCSLSWKPPLDDGG-SPITNYVVEKYES 492
PSPP L V+D+T S +LSW+PP DDG I Y VE E
Sbjct: 1 PSPPSN-LRVTDVTSTSVTLSWEPPPDDGITGYIVGYRVEYREE 43
|
One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins. Length = 83 |
| >gnl|CDD|143209 cd05732, Ig5_NCAM-1_like, Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins | Back alignment and domain information |
|---|
Score = 40.6 bits (95), Expect = 2e-04
Identities = 26/93 (27%), Positives = 38/93 (40%), Gaps = 9/93 (9%)
Query: 354 PKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIW-----TVNGDEVSPDGRIKFETSE 408
PKIT + + T + E+ T+T G P P W + + S DGRI
Sbjct: 3 PKITY---LENQTAVELEQITLTCEAEGDPIPEITWRRATRNFSEGDKSLDGRIVVRGHA 59
Query: 409 NQTIYRNKSAKRATDSGSYTIQLVNTVGSDSAS 441
+ K + TD+G Y + N +G D S
Sbjct: 60 RVSSLTLKDVQ-LTDAGRYDCEASNRIGGDQQS 91
|
Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans interactions), through binding to the Ig1 and Ig2 domains. The adhesive ability of NCAM is modulated by the addition of polysialic acid chains to the fifth Ig-like domain. Also included in this group is NCAM-2 (also known as OCAM/mamFas II and RNCAM) NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE). Length = 96 |
| >gnl|CDD|214653 smart00410, IG_like, Immunoglobulin like | Back alignment and domain information |
|---|
Score = 38.6 bits (90), Expect = 6e-04
Identities = 13/47 (27%), Positives = 20/47 (42%)
Query: 268 GKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVV 314
R + +T++L I N +DSG Y A N G + + V
Sbjct: 39 SGRFSVSRSGSTSTLTISNVTPEDSGTYTCAATNSSGSASSGTTLTV 85
|
IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG. Length = 85 |
| >gnl|CDD|214652 smart00409, IG, Immunoglobulin | Back alignment and domain information |
|---|
Score = 38.6 bits (90), Expect = 6e-04
Identities = 13/47 (27%), Positives = 20/47 (42%)
Query: 268 GKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVV 314
R + +T++L I N +DSG Y A N G + + V
Sbjct: 39 SGRFSVSRSGSTSTLTISNVTPEDSGTYTCAATNSSGSASSGTTLTV 85
|
Length = 85 |
| >gnl|CDD|143212 cd05735, Ig8_DSCAM, Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM) | Back alignment and domain information |
|---|
Score = 38.9 bits (90), Expect = 6e-04
Identities = 19/51 (37%), Positives = 26/51 (50%)
Query: 271 IKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPP 321
KE ++L I +VR+DSG + A N YG D I++ V P PP
Sbjct: 38 TKEVGDEVISTLQILPTVREDSGFFSCHAINSYGEDRGIIQLTVQEPPDPP 88
|
Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion. Length = 88 |
| >gnl|CDD|143165 cd00096, Ig, Immunoglobulin domain | Back alignment and domain information |
|---|
Score = 36.3 bits (83), Expect = 0.003
Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 3/71 (4%)
Query: 374 TITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNK---SAKRATDSGSYTIQ 430
T+T SG P PT W NG + + +S + + S DSG+YT
Sbjct: 2 TLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCV 61
Query: 431 LVNTVGSDSAS 441
N+ G+ SAS
Sbjct: 62 ASNSAGTVSAS 72
|
Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74 |
| >gnl|CDD|200951 pfam00041, fn3, Fibronectin type III domain | Back alignment and domain information |
|---|
Score = 36.2 bits (84), Expect = 0.004
Identities = 19/42 (45%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Query: 451 SPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYES 492
S P L V+D+T S +LSW PP G PIT Y VE
Sbjct: 1 SAPTN-LTVTDVTSTSLTLSWSPP--PGNGPITGYEVEYRPV 39
|
Length = 84 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 516 | |||
| KOG3513|consensus | 1051 | 100.0 | ||
| KOG3513|consensus | 1051 | 100.0 | ||
| KOG4221|consensus | 1381 | 100.0 | ||
| KOG4221|consensus | 1381 | 99.98 | ||
| KOG4222|consensus | 1281 | 99.94 | ||
| PHA02785 | 326 | IL-beta-binding protein; Provisional | 99.9 | |
| KOG4194|consensus | 873 | 99.89 | ||
| KOG4222|consensus | 1281 | 99.85 | ||
| KOG4194|consensus | 873 | 99.81 | ||
| PHA02785 | 326 | IL-beta-binding protein; Provisional | 99.61 | |
| cd05762 | 98 | Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of | 99.61 | |
| PHA02826 | 227 | IL-1 receptor-like protein; Provisional | 99.54 | |
| PHA02826 | 227 | IL-1 receptor-like protein; Provisional | 99.51 | |
| cd05762 | 98 | Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of | 99.45 | |
| cd05894 | 86 | Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of card | 99.42 | |
| cd05735 | 88 | Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down | 99.4 | |
| cd05737 | 92 | Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)- | 99.39 | |
| cd05747 | 92 | Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like | 99.38 | |
| cd05894 | 86 | Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of card | 99.36 | |
| cd04975 | 101 | Ig4_SCFR_like Fourth immunoglobulin (Ig)-like doma | 99.35 | |
| PF07679 | 90 | I-set: Immunoglobulin I-set domain; InterPro: IPR0 | 99.34 | |
| cd05892 | 75 | Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like | 99.34 | |
| cd05737 | 92 | Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)- | 99.34 | |
| cd05748 | 74 | Ig_Titin_like Immunoglobulin (Ig)-like domain of t | 99.34 | |
| cd05747 | 92 | Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like | 99.33 | |
| cd04972 | 90 | Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) o | 99.33 | |
| cd05745 | 74 | Ig3_Peroxidasin Third immunoglobulin (Ig)-like dom | 99.31 | |
| PF07679 | 90 | I-set: Immunoglobulin I-set domain; InterPro: IPR0 | 99.3 | |
| cd05852 | 73 | Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig | 99.3 | |
| cd05851 | 88 | Ig3_Contactin-1 Third Ig domain of contactin-1. Ig | 99.3 | |
| cd05859 | 101 | Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like do | 99.3 | |
| cd05730 | 95 | Ig3_NCAM-1_like Third immunoglobulin (Ig)-like dom | 99.29 | |
| cd05893 | 75 | Ig_Palladin_C C-terminal immunoglobulin (Ig)-like | 99.28 | |
| cd05851 | 88 | Ig3_Contactin-1 Third Ig domain of contactin-1. Ig | 99.28 | |
| cd05891 | 92 | Ig_M-protein_C C-terminal immunoglobulin (Ig)-like | 99.26 | |
| cd05743 | 78 | Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domai | 99.26 | |
| cd05728 | 85 | Ig4_Contactin-2-like Fourth Ig domain of the neura | 99.24 | |
| cd04972 | 90 | Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) o | 99.24 | |
| cd05744 | 75 | Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain | 99.23 | |
| cd04975 | 101 | Ig4_SCFR_like Fourth immunoglobulin (Ig)-like doma | 99.23 | |
| cd05866 | 92 | Ig1_NCAM-2 First immunoglobulin (Ig)-like domain o | 99.22 | |
| cd05723 | 71 | Ig4_Neogenin Fourth immunoglobulin (Ig)-like domai | 99.22 | |
| cd05748 | 74 | Ig_Titin_like Immunoglobulin (Ig)-like domain of t | 99.22 | |
| cd05865 | 96 | Ig1_NCAM-1 First immunoglobulin (Ig)-like domain o | 99.22 | |
| cd05854 | 85 | Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig | 99.22 | |
| cd05745 | 74 | Ig3_Peroxidasin Third immunoglobulin (Ig)-like dom | 99.21 | |
| cd05870 | 98 | Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain o | 99.21 | |
| cd05891 | 92 | Ig_M-protein_C C-terminal immunoglobulin (Ig)-like | 99.21 | |
| cd05868 | 76 | Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain o | 99.21 | |
| cd04978 | 76 | Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like | 99.2 | |
| cd05852 | 73 | Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig | 99.2 | |
| cd05867 | 76 | Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like do | 99.2 | |
| cd05857 | 85 | Ig2_FGFR Second immunoglobulin (Ig)-like domain of | 99.2 | |
| cd05732 | 96 | Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like dom | 99.2 | |
| cd05892 | 75 | Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like | 99.2 | |
| cd05870 | 98 | Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain o | 99.2 | |
| cd05869 | 97 | Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain o | 99.19 | |
| cd04969 | 73 | Ig5_Contactin_like Fifth Ig domain of contactin. I | 99.19 | |
| cd05732 | 96 | Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like dom | 99.19 | |
| cd05863 | 67 | Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain | 99.19 | |
| cd05730 | 95 | Ig3_NCAM-1_like Third immunoglobulin (Ig)-like dom | 99.18 | |
| cd05869 | 97 | Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain o | 99.18 | |
| cd05743 | 78 | Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domai | 99.17 | |
| cd04968 | 88 | Ig3_Contactin_like Third Ig domain of contactin. I | 99.17 | |
| cd05740 | 91 | Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domai | 99.17 | |
| cd04971 | 81 | Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of | 99.17 | |
| cd05855 | 79 | Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of T | 99.16 | |
| cd05865 | 96 | Ig1_NCAM-1 First immunoglobulin (Ig)-like domain o | 99.16 | |
| cd05866 | 92 | Ig1_NCAM-2 First immunoglobulin (Ig)-like domain o | 99.15 | |
| cd05853 | 85 | Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig | 99.14 | |
| cd05893 | 75 | Ig_Palladin_C C-terminal immunoglobulin (Ig)-like | 99.14 | |
| cd05746 | 69 | Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like do | 99.14 | |
| cd05773 | 109 | Ig8_hNephrin_like Eighth immunoglobulin-like domai | 99.14 | |
| cd04970 | 85 | Ig6_Contactin_like Sixth Ig domain of contactin. I | 99.13 | |
| cd05728 | 85 | Ig4_Contactin-2-like Fourth Ig domain of the neura | 99.13 | |
| cd04968 | 88 | Ig3_Contactin_like Third Ig domain of contactin. I | 99.12 | |
| cd05864 | 70 | Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain | 99.12 | |
| cd05736 | 76 | Ig2_Follistatin_like Second immunoglobulin (Ig)-li | 99.11 | |
| cd05857 | 85 | Ig2_FGFR Second immunoglobulin (Ig)-like domain of | 99.11 | |
| cd05876 | 71 | Ig3_L1-CAM Third immunoglobulin (Ig)-like domain o | 99.11 | |
| cd05760 | 77 | Ig2_PTK7 Second immunoglobulin (Ig)-like domain of | 99.1 | |
| cd04976 | 71 | Ig2_VEGFR Second immunoglobulin (Ig)-like domain o | 99.1 | |
| cd04973 | 79 | Ig1_FGFR First immunoglobulin (Ig)-like domain of | 99.09 | |
| cd04969 | 73 | Ig5_Contactin_like Fifth Ig domain of contactin. I | 99.09 | |
| cd05744 | 75 | Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain | 99.09 | |
| cd05739 | 69 | Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-li | 99.08 | |
| cd05867 | 76 | Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like do | 99.08 | |
| cd05763 | 75 | Ig_1 Subgroup of the immunoglobulin (Ig) superfami | 99.08 | |
| cd04978 | 76 | Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like | 99.08 | |
| cd05868 | 76 | Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain o | 99.08 | |
| cd05723 | 71 | Ig4_Neogenin Fourth immunoglobulin (Ig)-like domai | 99.07 | |
| cd05740 | 91 | Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domai | 99.07 | |
| cd04973 | 79 | Ig1_FGFR First immunoglobulin (Ig)-like domain of | 99.07 | |
| cd05856 | 82 | Ig2_FGFRL1-like Second immunoglobulin (Ig)-like do | 99.07 | |
| cd05859 | 101 | Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like do | 99.07 | |
| cd05726 | 90 | Ig4_Robo Fhird immunoglobulin (Ig)-like domain in | 99.07 | |
| cd05735 | 88 | Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down | 99.07 | |
| cd05863 | 67 | Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain | 99.06 | |
| cd05758 | 98 | Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like do | 99.05 | |
| cd05738 | 74 | Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-l | 99.05 | |
| cd05858 | 90 | Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain o | 99.05 | |
| cd05725 | 69 | Ig3_Robo Third immunoglobulin (Ig)-like domain in | 99.04 | |
| cd05746 | 69 | Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like do | 99.04 | |
| PF00041 | 85 | fn3: Fibronectin type III domain; InterPro: IPR003 | 99.04 | |
| cd04971 | 81 | Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of | 99.03 | |
| cd05855 | 79 | Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of T | 99.03 | |
| cd05724 | 86 | Ig2_Robo Second immunoglobulin (Ig)-like domain in | 99.02 | |
| cd07693 | 100 | Ig1_Robo First immunoglobulin (Ig)-like domain in | 99.02 | |
| cd05724 | 86 | Ig2_Robo Second immunoglobulin (Ig)-like domain in | 99.01 | |
| cd05731 | 71 | Ig3_L1-CAM_like Third immunoglobulin (Ig)-like dom | 99.01 | |
| cd04977 | 92 | Ig1_NCAM-1_like First immunoglobulin (Ig)-like dom | 99.01 | |
| cd05750 | 75 | Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain | 99.01 | |
| cd05758 | 98 | Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like do | 99.01 | |
| cd05764 | 74 | Ig_2 Subgroup of the immunoglobulin (Ig) superfami | 99.0 | |
| cd05848 | 94 | Ig1_Contactin-5 First Ig domain of contactin-5. Ig | 99.0 | |
| cd04974 | 90 | Ig3_FGFR Third immunoglobulin (Ig)-like domain of | 99.0 | |
| cd05749 | 81 | Ig2_Tyro3_like Second immunoglobulin (Ig)-like dom | 98.99 | |
| cd05739 | 69 | Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-li | 98.99 | |
| cd05848 | 94 | Ig1_Contactin-5 First Ig domain of contactin-5. Ig | 98.99 | |
| cd07693 | 100 | Ig1_Robo First immunoglobulin (Ig)-like domain in | 98.99 | |
| cd05856 | 82 | Ig2_FGFRL1-like Second immunoglobulin (Ig)-like do | 98.99 | |
| KOG3515|consensus | 741 | 98.99 | ||
| cd05765 | 81 | Ig_3 Subgroup of the immunoglobulin (Ig) superfami | 98.98 | |
| cd05773 | 109 | Ig8_hNephrin_like Eighth immunoglobulin-like domai | 98.98 | |
| cd05864 | 70 | Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain | 98.97 | |
| cd05756 | 94 | Ig1_IL1R_like First immunoglobulin (Ig)-like domai | 98.97 | |
| cd04976 | 71 | Ig2_VEGFR Second immunoglobulin (Ig)-like domain o | 98.97 | |
| cd05756 | 94 | Ig1_IL1R_like First immunoglobulin (Ig)-like domai | 98.97 | |
| KOG3515|consensus | 741 | 98.97 | ||
| cd04977 | 92 | Ig1_NCAM-1_like First immunoglobulin (Ig)-like dom | 98.96 | |
| cd05850 | 94 | Ig1_Contactin-2 First Ig domain of contactin-2. Ig | 98.96 | |
| cd05750 | 75 | Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain | 98.96 | |
| cd05850 | 94 | Ig1_Contactin-2 First Ig domain of contactin-2. Ig | 98.96 | |
| cd05722 | 95 | Ig1_Neogenin First immunoglobulin (Ig)-like domain | 98.95 | |
| cd05874 | 77 | Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of | 98.95 | |
| cd05854 | 85 | Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig | 98.94 | |
| cd05763 | 75 | Ig_1 Subgroup of the immunoglobulin (Ig) superfami | 98.93 | |
| cd05760 | 77 | Ig2_PTK7 Second immunoglobulin (Ig)-like domain of | 98.93 | |
| cd05858 | 90 | Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain o | 98.93 | |
| cd05733 | 77 | Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like dom | 98.93 | |
| cd05876 | 71 | Ig3_L1-CAM Third immunoglobulin (Ig)-like domain o | 98.93 | |
| cd05736 | 76 | Ig2_Follistatin_like Second immunoglobulin (Ig)-li | 98.92 | |
| cd05875 | 77 | Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-li | 98.92 | |
| cd05749 | 81 | Ig2_Tyro3_like Second immunoglobulin (Ig)-like dom | 98.91 | |
| cd05771 | 139 | IgC_Tapasin_R Tapasin-R immunoglobulin-like domain | 98.91 | |
| cd05726 | 90 | Ig4_Robo Fhird immunoglobulin (Ig)-like domain in | 98.91 | |
| cd05725 | 69 | Ig3_Robo Third immunoglobulin (Ig)-like domain in | 98.91 | |
| cd05733 | 77 | Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like dom | 98.9 | |
| cd05742 | 84 | Ig1_VEGFR_like First immunoglobulin (Ig)-like doma | 98.89 | |
| cd05764 | 74 | Ig_2 Subgroup of the immunoglobulin (Ig) superfami | 98.89 | |
| cd05849 | 93 | Ig1_Contactin-1 First Ig domain of contactin-1. Ig | 98.89 | |
| cd07702 | 72 | Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain | 98.88 | |
| cd05898 | 98 | Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain | 98.88 | |
| cd04974 | 90 | Ig3_FGFR Third immunoglobulin (Ig)-like domain of | 98.87 | |
| cd05874 | 77 | Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of | 98.86 | |
| cd04970 | 85 | Ig6_Contactin_like Sixth Ig domain of contactin. I | 98.85 | |
| cd05849 | 93 | Ig1_Contactin-1 First Ig domain of contactin-1. Ig | 98.84 | |
| cd05895 | 76 | Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domai | 98.84 | |
| cd07702 | 72 | Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain | 98.84 | |
| cd05875 | 77 | Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-li | 98.84 | |
| cd05731 | 71 | Ig3_L1-CAM_like Third immunoglobulin (Ig)-like dom | 98.83 | |
| cd05895 | 76 | Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domai | 98.83 | |
| cd05853 | 85 | Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig | 98.83 | |
| cd05738 | 74 | Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-l | 98.83 | |
| cd05742 | 84 | Ig1_VEGFR_like First immunoglobulin (Ig)-like doma | 98.83 | |
| cd05734 | 79 | Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain | 98.81 | |
| cd05861 | 84 | Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like | 98.81 | |
| cd05729 | 85 | Ig2_FGFR_like Second immunoglobulin (Ig)-like doma | 98.81 | |
| cd07701 | 95 | Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)- | 98.8 | |
| cd05882 | 95 | Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)- | 98.8 | |
| cd05898 | 98 | Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain | 98.78 | |
| cd04967 | 91 | Ig1_Contactin First Ig domain of contactin. Ig1_Co | 98.78 | |
| cd05861 | 84 | Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like | 98.78 | |
| cd05765 | 81 | Ig_3 Subgroup of the immunoglobulin (Ig) superfami | 98.78 | |
| cd05722 | 95 | Ig1_Neogenin First immunoglobulin (Ig)-like domain | 98.77 | |
| cd07701 | 95 | Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)- | 98.77 | |
| cd05752 | 78 | Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like do | 98.77 | |
| cd05873 | 87 | Ig_Sema4D_like Immunoglobulin (Ig)-like domain of | 98.75 | |
| cd05754 | 85 | Ig3_Perlecan_like Third immunoglobulin (Ig)-like d | 98.74 | |
| cd05882 | 95 | Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)- | 98.73 | |
| cd04979 | 89 | Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of | 98.72 | |
| cd05754 | 85 | Ig3_Perlecan_like Third immunoglobulin (Ig)-like d | 98.71 | |
| cd05729 | 85 | Ig2_FGFR_like Second immunoglobulin (Ig)-like doma | 98.7 | |
| KOG0196|consensus | 996 | 98.68 | ||
| cd04979 | 89 | Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of | 98.68 | |
| cd04967 | 91 | Ig1_Contactin First Ig domain of contactin. Ig1_Co | 98.68 | |
| cd05757 | 92 | Ig2_IL1R_like Second immunoglobulin (Ig)-like doma | 98.67 | |
| cd05752 | 78 | Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like do | 98.66 | |
| cd05873 | 87 | Ig_Sema4D_like Immunoglobulin (Ig)-like domain of | 98.65 | |
| cd07690 | 94 | Ig1_CD4 First immunoglobulin (Ig) domain of CD4. I | 98.65 | |
| cd05727 | 96 | Ig2_Contactin-2-like Second Ig domain of the neura | 98.65 | |
| cd05757 | 92 | Ig2_IL1R_like Second immunoglobulin (Ig)-like doma | 98.64 | |
| cd05860 | 101 | Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of | 98.63 | |
| smart00409 | 86 | IG Immunoglobulin. | 98.6 | |
| smart00410 | 86 | IG_like Immunoglobulin like. IG domains that canno | 98.6 | |
| cd05845 | 95 | Ig2_L1-CAM_like Second immunoglobulin (Ig)-like do | 98.6 | |
| cd05734 | 79 | Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain | 98.57 | |
| smart00410 | 86 | IG_like Immunoglobulin like. IG domains that canno | 98.54 | |
| smart00409 | 86 | IG Immunoglobulin. | 98.54 | |
| smart00408 | 63 | IGc2 Immunoglobulin C-2 Type. | 98.52 | |
| cd05717 | 95 | Ig1_Necl-1-3_like First (N-terminal) immunoglobuli | 98.51 | |
| cd05717 | 95 | Ig1_Necl-1-3_like First (N-terminal) immunoglobuli | 98.51 | |
| smart00408 | 63 | IGc2 Immunoglobulin C-2 Type. | 98.48 | |
| cd05753 | 83 | Ig2_FcgammaR_like Second immunoglobulin (Ig)-like | 98.48 | |
| cd05771 | 139 | IgC_Tapasin_R Tapasin-R immunoglobulin-like domain | 98.47 | |
| PHA03376 | 221 | BARF1; Provisional | 98.47 | |
| cd05862 | 86 | Ig1_VEGFR First immunoglobulin (Ig)-like domain of | 98.45 | |
| cd05881 | 95 | Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)- | 98.45 | |
| PF00047 | 64 | ig: Immunoglobulin domain The Prosite family only | 98.44 | |
| cd07690 | 94 | Ig1_CD4 First immunoglobulin (Ig) domain of CD4. I | 98.44 | |
| cd05727 | 96 | Ig2_Contactin-2-like Second Ig domain of the neura | 98.42 | |
| cd05753 | 83 | Ig2_FcgammaR_like Second immunoglobulin (Ig)-like | 98.41 | |
| cd05871 | 91 | Ig_Semaphorin_classIII Immunoglobulin (Ig)-like do | 98.38 | |
| PF13895 | 80 | Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V | 98.38 | |
| cd05862 | 86 | Ig1_VEGFR First immunoglobulin (Ig)-like domain of | 98.37 | |
| cd05871 | 91 | Ig_Semaphorin_classIII Immunoglobulin (Ig)-like do | 98.34 | |
| PF13895 | 80 | Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V | 98.3 | |
| PF00047 | 64 | ig: Immunoglobulin domain The Prosite family only | 98.3 | |
| cd05713 | 100 | Ig_MOG_like Immunoglobulin (Ig)-like domain of mye | 98.29 | |
| cd05896 | 104 | Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like | 98.25 | |
| cd05881 | 95 | Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)- | 98.24 | |
| KOG0196|consensus | 996 | 98.23 | ||
| cd05845 | 95 | Ig2_L1-CAM_like Second immunoglobulin (Ig)-like do | 98.22 | |
| cd05860 | 101 | Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of | 98.2 | |
| cd00063 | 93 | FN3 Fibronectin type 3 domain; One of three types | 98.2 | |
| cd04983 | 109 | IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V | 98.18 | |
| cd05897 | 95 | Ig2_IL1R2_like Second immunoglobulin (Ig)-like dom | 98.16 | |
| cd05872 | 85 | Ig_Sema4B_like Immunoglobulin (Ig)-like domain of | 98.16 | |
| cd05897 | 95 | Ig2_IL1R2_like Second immunoglobulin (Ig)-like dom | 98.15 | |
| cd05885 | 80 | Ig2_Necl-4 Second immunoglobulin (Ig)-like domain | 98.11 | |
| PF13927 | 75 | Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1V | 98.1 | |
| cd05759 | 82 | Ig2_KIRREL3-like Second immunoglobulin (Ig)-like d | 98.1 | |
| cd05872 | 85 | Ig_Sema4B_like Immunoglobulin (Ig)-like domain of | 98.08 | |
| cd00099 | 105 | IgV Immunoglobulin variable domain (IgV). IgV: Imm | 98.04 | |
| cd05885 | 80 | Ig2_Necl-4 Second immunoglobulin (Ig)-like domain | 98.02 | |
| cd05751 | 91 | Ig1_LILRB1_like First immunoglobulin (Ig)-like dom | 97.99 | |
| cd05896 | 104 | Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like | 97.98 | |
| cd05899 | 110 | IgV_TCR_beta Immunoglobulin (Ig) variable (V) doma | 97.95 | |
| cd04983 | 109 | IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V | 97.94 | |
| cd05751 | 91 | Ig1_LILRB1_like First immunoglobulin (Ig)-like dom | 97.94 | |
| cd05900 | 112 | Ig_Aggrecan Immunoglobulin (Ig)-like domain of the | 97.94 | |
| cd04980 | 106 | IgV_L_kappa Immunoglobulin (Ig) light chain, kappa | 97.92 | |
| cd05714 | 106 | Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of cho | 97.9 | |
| cd05879 | 116 | Ig_P0 Immunoglobulin (Ig)-like domain of Protein z | 97.9 | |
| cd05714 | 106 | Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of cho | 97.89 | |
| cd05880 | 115 | Ig_EVA1 Immunoglobulin (Ig)-like domain of epithel | 97.88 | |
| cd05900 | 112 | Ig_Aggrecan Immunoglobulin (Ig)-like domain of the | 97.87 | |
| cd04982 | 116 | IgV_TCR_gamma Immunoglobulin (Ig) variable (V) dom | 97.84 | |
| cd05877 | 106 | Ig_LP_like Immunoglobulin (Ig)-like domain of huma | 97.83 | |
| cd05899 | 110 | IgV_TCR_beta Immunoglobulin (Ig) variable (V) doma | 97.83 | |
| smart00060 | 83 | FN3 Fibronectin type 3 domain. One of three types | 97.82 | |
| cd05759 | 82 | Ig2_KIRREL3-like Second immunoglobulin (Ig)-like d | 97.82 | |
| cd05902 | 110 | Ig_Neurocan Immunoglobulin (Ig)-like domain of the | 97.81 | |
| cd00099 | 105 | IgV Immunoglobulin variable domain (IgV). IgV: Imm | 97.81 | |
| cd05878 | 110 | Ig_Aggrecan_like Immunoglobulin (Ig)-like domain o | 97.81 | |
| cd05718 | 98 | Ig1_PVR_like First immunoglobulin (Ig) domain of p | 97.8 | |
| cd05711 | 94 | Ig_FcalphaRI Immunoglobulin (IG)-like domain of of | 97.78 | |
| cd05877 | 106 | Ig_LP_like Immunoglobulin (Ig)-like domain of huma | 97.78 | |
| cd05713 | 100 | Ig_MOG_like Immunoglobulin (Ig)-like domain of mye | 97.78 | |
| KOG0613|consensus | 1205 | 97.77 | ||
| cd04984 | 98 | IgV_L_lambda Immunoglobulin (Ig) lambda light chai | 97.76 | |
| cd04980 | 106 | IgV_L_kappa Immunoglobulin (Ig) light chain, kappa | 97.76 | |
| cd05774 | 105 | Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain | 97.75 | |
| cd05741 | 92 | Ig_CEACAM_D1_like First immunoglobulin (Ig)-like d | 97.72 | |
| cd05775 | 97 | Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig) | 97.71 | |
| cd05901 | 117 | Ig_Versican Immunoglobulin (Ig)-like domain of the | 97.68 | |
| cd05715 | 116 | Ig_P0-like Immunoglobulin (Ig)-like domain of Prot | 97.67 | |
| cd05718 | 98 | Ig1_PVR_like First immunoglobulin (Ig) domain of p | 97.66 | |
| cd05712 | 119 | Ig_Siglec_N Immunoglobulin (Ig) domain at the N te | 97.66 | |
| cd04982 | 116 | IgV_TCR_gamma Immunoglobulin (Ig) variable (V) dom | 97.62 | |
| cd05878 | 110 | Ig_Aggrecan_like Immunoglobulin (Ig)-like domain o | 97.61 | |
| cd05880 | 115 | Ig_EVA1 Immunoglobulin (Ig)-like domain of epithel | 97.61 | |
| PF13927 | 75 | Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1V | 97.6 | |
| cd04984 | 98 | IgV_L_lambda Immunoglobulin (Ig) lambda light chai | 97.58 | |
| cd05879 | 116 | Ig_P0 Immunoglobulin (Ig)-like domain of Protein z | 97.57 | |
| cd05711 | 94 | Ig_FcalphaRI Immunoglobulin (IG)-like domain of of | 97.53 | |
| cd05741 | 92 | Ig_CEACAM_D1_like First immunoglobulin (Ig)-like d | 97.5 | |
| PHA02987 | 189 | Ig domain OX-2-like protein; Provisional | 97.49 | |
| cd07706 | 116 | IgV_TCR_delta Immunoglobulin (Ig) variable (V) dom | 97.46 | |
| cd07694 | 88 | Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. | 97.45 | |
| cd05775 | 97 | Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig) | 97.45 | |
| cd05774 | 105 | Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain | 97.41 | |
| cd05716 | 98 | Ig_pIgR Immunoglobulin (Ig)-like domain in the pol | 97.4 | |
| cd05888 | 100 | Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain | 97.35 | |
| cd05883 | 82 | Ig2_Necl-2 Second immunoglobulin (Ig)-like domain | 97.35 | |
| cd05886 | 99 | Ig1_Nectin-1_like First immunoglobulin (Ig) domain | 97.34 | |
| cd05715 | 116 | Ig_P0-like Immunoglobulin (Ig)-like domain of Prot | 97.33 | |
| cd05888 | 100 | Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain | 97.28 | |
| PF07686 | 114 | V-set: Immunoglobulin V-set domain; InterPro: IPR0 | 97.27 | |
| cd00098 | 95 | IgC Immunoglobulin Constant domain. IgC: Immunoglo | 97.27 | |
| cd05902 | 110 | Ig_Neurocan Immunoglobulin (Ig)-like domain of the | 97.24 | |
| cd05886 | 99 | Ig1_Nectin-1_like First immunoglobulin (Ig) domain | 97.24 | |
| cd07700 | 107 | IgV_CD8_beta Immunoglobulin (Ig) like domain of CD | 97.23 | |
| cd07705 | 83 | Ig2_Necl-1 Second immunoglobulin (Ig)-like domain | 97.2 | |
| cd05901 | 117 | Ig_Versican Immunoglobulin (Ig)-like domain of the | 97.2 | |
| cd05761 | 82 | Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like | 97.18 | |
| cd05716 | 98 | Ig_pIgR Immunoglobulin (Ig)-like domain in the pol | 97.16 | |
| cd05720 | 104 | Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD | 97.14 | |
| PF00041 | 85 | fn3: Fibronectin type III domain; InterPro: IPR003 | 97.13 | |
| cd07694 | 88 | Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. | 97.13 | |
| cd05846 | 97 | Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain | 97.12 | |
| cd07706 | 116 | IgV_TCR_delta Immunoglobulin (Ig) variable (V) dom | 97.11 | |
| cd05755 | 100 | Ig2_ICAM-1_like Second immunoglobulin (Ig)-like do | 97.1 | |
| cd05846 | 97 | Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain | 97.1 | |
| cd05887 | 96 | Ig1_Nectin-3_like First immunoglobulin (Ig) domain | 97.08 | |
| PF07686 | 114 | V-set: Immunoglobulin V-set domain; InterPro: IPR0 | 97.08 | |
| cd05761 | 82 | Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like | 97.08 | |
| cd07705 | 83 | Ig2_Necl-1 Second immunoglobulin (Ig)-like domain | 97.06 | |
| cd05884 | 83 | Ig2_Necl-3 Second immunoglobulin (Ig)-like domain | 97.05 | |
| cd00098 | 95 | IgC Immunoglobulin Constant domain. IgC: Immunoglo | 97.02 | |
| cd05887 | 96 | Ig1_Nectin-3_like First immunoglobulin (Ig) domain | 97.02 | |
| cd04981 | 117 | IgV_H Immunoglobulin (Ig) heavy chain (H), variabl | 97.01 | |
| PHA02987 | 189 | Ig domain OX-2-like protein; Provisional | 97.01 | |
| cd00096 | 74 | Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) | 96.97 | |
| cd05889 | 96 | Ig1_DNAM-1_like First immunoglobulin (Ig) domain o | 96.91 | |
| cd05883 | 82 | Ig2_Necl-2 Second immunoglobulin (Ig)-like domain | 96.89 | |
| KOG4367|consensus | 699 | 96.88 | ||
| cd05720 | 104 | Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD | 96.87 | |
| cd05712 | 119 | Ig_Siglec_N Immunoglobulin (Ig) domain at the N te | 96.84 | |
| cd00096 | 74 | Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) | 96.8 | |
| cd07700 | 107 | IgV_CD8_beta Immunoglobulin (Ig) like domain of CD | 96.8 | |
| cd05884 | 83 | Ig2_Necl-3 Second immunoglobulin (Ig)-like domain | 96.76 | |
| cd05755 | 100 | Ig2_ICAM-1_like Second immunoglobulin (Ig)-like do | 96.71 | |
| smart00406 | 81 | IGv Immunoglobulin V-Type. | 96.62 | |
| PF08205 | 89 | C2-set_2: CD80-like C2-set immunoglobulin domain ; | 96.53 | |
| KOG0613|consensus | 1205 | 96.53 | ||
| cd05772 | 111 | IgC_SIRP Signal-regulatory protein (SIRP) immunogl | 96.41 | |
| PHA03376 | 221 | BARF1; Provisional | 96.27 | |
| TIGR00864 | 2740 | PCC polycystin cation channel protein. Note: this | 96.26 | |
| cd04981 | 117 | IgV_H Immunoglobulin (Ig) heavy chain (H), variabl | 96.23 | |
| cd07692 | 65 | Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of | 96.21 | |
| cd05772 | 111 | IgC_SIRP Signal-regulatory protein (SIRP) immunogl | 96.19 | |
| PF01108 | 107 | Tissue_fac: Tissue factor; PDB: 3OG4_B 3OG6_B 1FYH | 95.99 | |
| cd05889 | 96 | Ig1_DNAM-1_like First immunoglobulin (Ig) domain o | 95.94 | |
| cd07698 | 93 | IgC_MHC_I_alpha3 Class I major histocompatibility | 95.82 | |
| KOG4258|consensus | 1025 | 95.74 | ||
| PF08205 | 89 | C2-set_2: CD80-like C2-set immunoglobulin domain ; | 95.74 | |
| smart00406 | 81 | IGv Immunoglobulin V-Type. | 95.69 | |
| cd07699 | 100 | IgC_L Immunoglobulin Constant domain. IgC_L: Immun | 95.51 | |
| cd05721 | 115 | IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic | 95.48 | |
| cd07698 | 93 | IgC_MHC_I_alpha3 Class I major histocompatibility | 95.36 | |
| smart00407 | 75 | IGc1 Immunoglobulin C-Type. | 95.35 | |
| cd05766 | 94 | IgC_MHC_II_beta Class II major histocompatibility | 95.35 | |
| smart00407 | 75 | IGc1 Immunoglobulin C-Type. | 95.23 | |
| PF09294 | 106 | Interfer-bind: Interferon-alpha/beta receptor, fib | 95.11 | |
| PHA02982 | 251 | hypothetical protein; Provisional | 95.05 | |
| cd05766 | 94 | IgC_MHC_II_beta Class II major histocompatibility | 95.03 | |
| PF07654 | 83 | C1-set: Immunoglobulin C1-set domain; InterPro: IP | 94.86 | |
| cd07699 | 100 | IgC_L Immunoglobulin Constant domain. IgC_L: Immun | 94.68 | |
| cd05719 | 95 | Ig2_PVR_like Second immunoglobulin (Ig) domain of | 94.67 | |
| cd05770 | 93 | IgC_beta2m Class I major histocompatibility comple | 94.31 | |
| cd05767 | 94 | IgC_MHC_II_alpha Class II major histocompatibility | 94.22 | |
| cd05768 | 102 | IgC_CH4 CH4 domain (fourth constant Ig domain of t | 94.14 | |
| PF07654 | 83 | C1-set: Immunoglobulin C1-set domain; InterPro: IP | 94.11 | |
| cd07704 | 97 | Ig2_Nectin-3-4_like Second immunoglobulin (Ig) dom | 94.1 | |
| cd07703 | 95 | Ig2_Nectin-2_like Second immunoglobulin (Ig) domai | 94.07 | |
| KOG4258|consensus | 1025 | 94.03 | ||
| cd05770 | 93 | IgC_beta2m Class I major histocompatibility comple | 94.02 | |
| cd07696 | 96 | IgC_CH3 CH3 domain (third constant Ig domain of th | 93.96 | |
| cd07697 | 96 | IgC_TCR_gamma T cell receptor (TCR) gamma chain co | 93.93 | |
| cd05847 | 94 | IgC_CH2_IgE CH2 domain (second constant Ig domain | 93.92 | |
| cd05769 | 115 | IgC_TCR_beta T cell receptor (TCR) beta chain cons | 93.86 | |
| cd05767 | 94 | IgC_MHC_II_alpha Class II major histocompatibility | 93.81 | |
| PF09067 | 104 | EpoR_lig-bind: Erythropoietin receptor, ligand bin | 93.74 | |
| cd05719 | 95 | Ig2_PVR_like Second immunoglobulin (Ig) domain of | 93.73 | |
| PHA02633 | 63 | hypothetical protein; Provisional | 93.62 | |
| cd05768 | 102 | IgC_CH4 CH4 domain (fourth constant Ig domain of t | 93.48 | |
| cd05847 | 94 | IgC_CH2_IgE CH2 domain (second constant Ig domain | 93.41 | |
| cd07691 | 69 | Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain | 93.09 | |
| PF11465 | 108 | Receptor_2B4: Natural killer cell receptor 2B4; In | 93.01 | |
| cd07697 | 96 | IgC_TCR_gamma T cell receptor (TCR) gamma chain co | 92.74 | |
| PHA02633 | 63 | hypothetical protein; Provisional | 92.72 | |
| cd07703 | 95 | Ig2_Nectin-2_like Second immunoglobulin (Ig) domai | 92.5 | |
| cd07691 | 69 | Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain | 92.46 | |
| cd07692 | 65 | Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of | 92.26 | |
| KOG4802|consensus | 516 | 91.93 | ||
| TIGR00864 | 2740 | PCC polycystin cation channel protein. Note: this | 91.78 | |
| PF07354 | 271 | Sp38: Zona-pellucida-binding protein (Sp38); Inter | 91.3 | |
| PHA02982 | 251 | hypothetical protein; Provisional | 91.22 | |
| PHA03270 | 466 | envelope glycoprotein C; Provisional | 91.12 | |
| cd05769 | 115 | IgC_TCR_beta T cell receptor (TCR) beta chain cons | 90.95 | |
| PF10179 | 300 | DUF2369: Uncharacterised conserved protein (DUF236 | 90.63 | |
| cd07696 | 96 | IgC_CH3 CH3 domain (third constant Ig domain of th | 90.5 | |
| KOG1480|consensus | 909 | 90.47 | ||
| PHA03273 | 486 | envelope glycoprotein C; Provisional | 90.41 | |
| cd07689 | 99 | Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain | 90.04 | |
| cd07704 | 97 | Ig2_Nectin-3-4_like Second immunoglobulin (Ig) dom | 89.92 | |
| PF09240 | 99 | IL6Ra-bind: Interleukin-6 receptor alpha chain, bi | 89.91 | |
| cd04986 | 99 | IgC_CH2 CH2 domain (second constant Ig domain of t | 89.89 | |
| cd07689 | 99 | Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain | 89.88 | |
| PHA03269 | 566 | envelope glycoprotein C; Provisional | 89.7 | |
| PF06328 | 89 | Lep_receptor_Ig: Ig-like C2-type domain; InterPro: | 89.69 | |
| cd04985 | 95 | IgC_CH1 CH1 domain (first constant Ig domain of th | 89.38 | |
| smart00060 | 83 | FN3 Fibronectin type 3 domain. One of three types | 89.3 | |
| cd00063 | 93 | FN3 Fibronectin type 3 domain; One of three types | 89.22 | |
| PF08204 | 130 | V-set_CD47: CD47 immunoglobulin-like domain; Inter | 88.74 | |
| cd05721 | 115 | IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic | 87.91 | |
| PHA03271 | 490 | envelope glycoprotein C; Provisional | 87.87 | |
| PHA02914 | 500 | Immunoglobulin-like domain protein; Provisional | 86.63 | |
| KOG4597|consensus | 560 | 86.35 | ||
| PHA03271 | 490 | envelope glycoprotein C; Provisional | 86.29 | |
| cd04985 | 95 | IgC_CH1 CH1 domain (first constant Ig domain of th | 85.74 | |
| PF08204 | 130 | V-set_CD47: CD47 immunoglobulin-like domain; Inter | 85.74 | |
| PHA03270 | 466 | envelope glycoprotein C; Provisional | 85.42 | |
| KOG4802|consensus | 516 | 84.87 | ||
| cd04986 | 99 | IgC_CH2 CH2 domain (second constant Ig domain of t | 84.85 | |
| PHA03269 | 566 | envelope glycoprotein C; Provisional | 82.26 | |
| KOG1480|consensus | 909 | 81.33 | ||
| PHA02914 | 500 | Immunoglobulin-like domain protein; Provisional | 80.87 | |
| PHA03042 | 286 | CD47-like protein; Provisional | 80.39 |
| >KOG3513|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-38 Score=323.63 Aligned_cols=391 Identities=21% Similarity=0.275 Sum_probs=306.6
Q ss_pred EEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCC-CeEEeEEeecCCcEEEeCCCcCCCeEEEEEEEecCCCCCCCCC
Q psy7039 22 ATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTG-NWEKAVVVPAGETSCTVPGLIEGETYQFQVRAVNAAGPGEASK 100 (516)
Q Consensus 22 ~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~-~~~~~~~~~~~~~~~~i~~l~~~~~y~~~~~a~n~~g~~~~s~ 100 (516)
........|.|.+.+- |.|+-. +.|++.++ .+..-.....-...|.|.+.+.+|.|.|+|.|.|..|...
T Consensus 251 ~~a~~G~~v~LECfA~----G~P~P~--i~W~k~~g~~~~~r~~~~~~~~vL~I~nv~~~D~G~Y~C~AeN~~G~~~--- 321 (1051)
T KOG3513|consen 251 ETALKGQSVKLECFAL----GNPTPQ--IKWRKVDGKPPPRRATYSNYGKVLKIPNVQYEDAGEYECIAENSRGSAT--- 321 (1051)
T ss_pred ccccCCCeEEEEEEec----CCCCCc--EEEEeCCCCCCCcceeeeccccEEEecccCcCCCeEEEEEEecccccce---
Confidence 4445678888888762 233332 33555555 4433333334567899999999999999999999988332
Q ss_pred CCcceEeccCCCCCccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCee
Q psy7039 101 PTAPIVAKPKNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQV 180 (516)
Q Consensus 101 ~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~ 180 (516)
....+.+. ++|.+. ..++++.+..|+.+.|.|.+. |.|.++++|.+|+.+
T Consensus 322 ~~~~v~v~---a~P~w~-~~~~d~~~~~gs~v~~eC~a~--------------------------g~P~p~v~WlkNg~p 371 (1051)
T KOG3513|consen 322 HSGHVTVY---APPYWL-QKPQDTEADTGSNVTLECKAS--------------------------GKPNPTVKWLKNGEP 371 (1051)
T ss_pred eeEEEEEe---cCchhh-cccceeEecCCCCeEEEEEec--------------------------CCCCCceEEeeCCee
Confidence 22223332 578887 788999999999999999999 999999999999999
Q ss_pred eccCCc---eEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEEeeceee----e------eccccCCceEEEE
Q psy7039 181 CQIGGR---ADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVTGTEF----T------DNNVHEGKAYEYR 247 (516)
Q Consensus 181 ~~~~~~---~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~~~~~~----~------~~~l~~g~~~~~~ 247 (516)
+....+ +.+. ...|+|.+++..|+|.|.|.|+|..|...+++.+.+... . ......|..+.+.
T Consensus 372 l~~~~r~~~~~i~----~g~L~is~v~~~dsg~YQC~A~Nk~G~i~anA~L~V~a~~P~f~~~p~~~~~~a~~g~~v~i~ 447 (1051)
T KOG3513|consen 372 LEPAERDPRYKID----DGTLIISNVQESDSGVYQCIAENKYGTIYANAELKVLASAPVFPLNPVERKVMAVVGGTVTID 447 (1051)
T ss_pred cCccCCCcceEEe----CCEEEEEecccccCeEEEeeeecccceEeeeeEEEEEccCCCCCCCccceEEEEEeCCeEEEe
Confidence 987655 5553 458999999999999999999999999988876655433 1 1233457888888
Q ss_pred EEEEccCCCCCceecccccccc--eEEEEEecceeeEEEccCCCCCceEEEEEEEecCCCcceeEEEEEecCCCCCCCCc
Q psy7039 248 VSAVNAAGTEKPKISLDALIGK--RIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPI 325 (516)
Q Consensus 248 ~~~~~~~g~p~p~i~W~~~~~~--~~~~~~~~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~p~~p~ 325 (516)
|.. .+.|.|.+.|.+.... .........+++|.|.+++.+|.|.|+|.|.|..|.......|.|...+.....
T Consensus 448 C~~---~asP~p~~~W~k~~~~~~~~~r~~i~edGtL~I~n~t~~DaG~YtC~A~N~~G~a~~~~~L~Vkd~tri~~~-- 522 (1051)
T KOG3513|consen 448 CKP---FASPKPKVSWLKGGEKLLQSGRIRILEDGTLEISNVTRSDAGKYTCVAENKLGKAESTGNLIVKDATRITLA-- 522 (1051)
T ss_pred ecc---CCCCcceEEEEcCCcccccCceEEECCCCcEEecccCcccCcEEEEEEEcccCccceEEEEEEecCceEEec--
Confidence 887 8999999999763321 111222467899999999999999999999999999999999999988765422
Q ss_pred eeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeee--cCCceEEEECCeecCC---CC
Q psy7039 326 DYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGR--PKPTPIWTVNGDEVSP---DG 400 (516)
Q Consensus 326 ~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~--p~~~i~W~~~~~~l~~---~~ 400 (516)
+.+..+..|+.+.|.|.+.-. ....|.|.++|..+.. ..
T Consensus 523 ------------------------------------P~~~~v~~g~~v~l~Ce~shD~~ld~~f~W~~nG~~id~~~~~~ 566 (1051)
T KOG3513|consen 523 ------------------------------------PSNTDVKVGESVTLTCEASHDPSLDITFTWKKNGRPIDFNPDGD 566 (1051)
T ss_pred ------------------------------------cchhhhccCceEEEEeecccCCCcceEEEEEECCEEhhccCCCC
Confidence 355678999999999998644 4458999999997743 34
Q ss_pred ceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEEEEecCCCCCCCCcccccccCCeEEEEeeCCCCCCCC
Q psy7039 401 RIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQGPLDVSDITPESCSLSWKPPLDDGGS 480 (516)
Q Consensus 401 ~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~v~~~p~~P~~~l~~~~~~~~~~~l~W~~p~~~~~~ 480 (516)
++......+...|+|.+++. .|+|.|.|.|+....+.+..+.+.|.++|.|| ..+++.+++..++.|+|++.. |+++
T Consensus 567 ~~~~~~~~~~g~L~i~nv~l-~~~G~Y~C~aqT~~Ds~s~~A~l~V~gpPgpP-~~v~~~~i~~t~~~lsW~~g~-dn~S 643 (1051)
T KOG3513|consen 567 HFEINDGSDSGRLTIANVSL-EDSGKYTCVAQTALDSASARADLLVRGPPGPP-PDVHVDDISDTTARLSWSPGS-DNNS 643 (1051)
T ss_pred ceEEeCCcCccceEEEeecc-ccCceEEEEEEEeecchhcccceEEecCCCCC-CceeEeeeccceEEEEeecCC-CCCC
Confidence 45544433336899999999 99999999999988888888999999999999 789999999999999999765 7789
Q ss_pred CcceEEEEEEecCCCceee
Q psy7039 481 PITNYVVEKYESATGVSDL 499 (516)
Q Consensus 481 ~i~~Y~v~~~~~~~~~~~~ 499 (516)
+|..|.|+.|....+.|..
T Consensus 644 pI~~Y~iq~rt~~~~~W~~ 662 (1051)
T KOG3513|consen 644 PIEKYTIQFRTPFPGKWKA 662 (1051)
T ss_pred CceEEeEEecCCCCCcceE
Confidence 9999999999986555443
|
|
| >KOG3513|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-32 Score=280.37 Aligned_cols=397 Identities=22% Similarity=0.280 Sum_probs=289.5
Q ss_pred CcceeccCCCCCCCCCcceEEEee-eCCeeEEEecCCCCCCCCceeceEEEEEeCCC--CeEEeEEeecCCcEEEeCCCc
Q psy7039 2 DHSVLIKNPFDEPGKPTDLEATDW-DKDHVDLQWTPPISDGGSPITGYVVEMKDKTG--NWEKAVVVPAGETSCTVPGLI 78 (516)
Q Consensus 2 ~~~~~~~~~~~~p~~p~~l~~~~~-~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~--~~~~~~~~~~~~~~~~i~~l~ 78 (516)
|..|.++...-.+=++..+....+ ....+.|.+.+|.+... ..|.....+... .-............|-|.++.
T Consensus 125 S~~~~l~~~~i~~F~~e~~~~v~v~eG~~~~L~C~pP~~~P~---l~~~W~~~~~~~~~~~~~~r~~~~~~G~Lyfs~V~ 201 (1051)
T KOG3513|consen 125 SREARLQFGFIPKFKKEERSPVEVEEGDGVVLPCNPPAHFPP---LRYYWMLNEFPHFVQIDNRRVFSQENGNLYFSNVE 201 (1051)
T ss_pred ccceeecccccccCccccCCcEEEEeCCceEEeCCCCCCCCC---ccEEehhccCCcccccCcceeEecccceEEEeecc
Confidence 455566666555545555545444 45569999999864332 334333322221 111122344567889999999
Q ss_pred CCCeEEEEEEEecCCCCCCCCCCCcceEec----cCCCCCccccCcccceEEecCCeEEEEEeeeeccccccCccccccc
Q psy7039 79 EGETYQFQVRAVNAAGPGEASKPTAPIVAK----PKNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGV 154 (516)
Q Consensus 79 ~~~~y~~~~~a~n~~g~~~~s~~~~~~~~~----~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~ 154 (516)
..|.+.|.|.|.+..-...-......+... ....+|.|....+..+....|+.+.|.|.+.
T Consensus 202 ~~D~~~Y~C~a~~~~~~~~v~~~~~~L~~~~~~~~~~~~P~i~~~~p~~~~a~~G~~v~LECfA~--------------- 266 (1051)
T KOG3513|consen 202 TSDFGNYICSATFPSTQTIVQGPPFPLIVRSNNVMREYAPKILVPFPETETALKGQSVKLECFAL--------------- 266 (1051)
T ss_pred hhhcCceEEEEEchhhcccccCCceeEEEcccccccccCCccccCCCCcccccCCCeEEEEEEec---------------
Confidence 999999999998844332222223333321 2346788876666688899999999999999
Q ss_pred cccCccceeecCcCceeeEEeeCCeeeccCCceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEEeecee--
Q psy7039 155 RANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVTGTE-- 232 (516)
Q Consensus 155 ~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~~~~~-- 232 (516)
|.|.|+|.|++.+.... ..+... ......|.|.+++.+|+|.|.|.++|..|.......+....
T Consensus 267 -----------G~P~P~i~W~k~~g~~~-~~r~~~--~~~~~vL~I~nv~~~D~G~Y~C~AeN~~G~~~~~~~v~v~a~P 332 (1051)
T KOG3513|consen 267 -----------GNPTPQIKWRKVDGKPP-PRRATY--SNYGKVLKIPNVQYEDAGEYECIAENSRGSATHSGHVTVYAPP 332 (1051)
T ss_pred -----------CCCCCcEEEEeCCCCCC-Ccceee--eccccEEEecccCcCCCeEEEEEEecccccceeeEEEEEecCc
Confidence 99999999999776421 222222 45567999999999999999999999999877766554432
Q ss_pred -----eeeccccCCceEEEEEEEEccCCCCCceecccccc-----cceEEEEEecceeeEEEccCCCCCceEEEEEEEec
Q psy7039 233 -----FTDNNVHEGKAYEYRVSAVNAAGTEKPKISLDALI-----GKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKND 302 (516)
Q Consensus 233 -----~~~~~l~~g~~~~~~~~~~~~~g~p~p~i~W~~~~-----~~~~~~~~~~~~~~l~i~~l~~~d~g~y~c~a~n~ 302 (516)
..+..+..|+.+.+.|.| .|.|.|++.|.+.. ..+ .-......+.|.|.+|...|+|.|+|.|+|.
T Consensus 333 ~w~~~~~d~~~~~gs~v~~eC~a---~g~P~p~v~WlkNg~pl~~~~r-~~~~~i~~g~L~is~v~~~dsg~YQC~A~Nk 408 (1051)
T KOG3513|consen 333 YWLQKPQDTEADTGSNVTLECKA---SGKPNPTVKWLKNGEPLEPAER-DPRYKIDDGTLIISNVQESDSGVYQCIAENK 408 (1051)
T ss_pred hhhcccceeEecCCCCeEEEEEe---cCCCCCceEEeeCCeecCccCC-CcceEEeCCEEEEEecccccCeEEEeeeecc
Confidence 245667889999999999 89999999997622 111 0112345789999999999999999999999
Q ss_pred CCCcceeEEEEEecC-CCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEee
Q psy7039 303 YGIDMADIEVVVVSK-PGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSG 381 (516)
Q Consensus 303 ~g~~~~~~~l~v~~~-p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g 381 (516)
+|...+.+.|.|... |..+..| ....+.+..|..+.+.|...+
T Consensus 409 ~G~i~anA~L~V~a~~P~f~~~p------------------------------------~~~~~~a~~g~~v~i~C~~~a 452 (1051)
T KOG3513|consen 409 YGTIYANAELKVLASAPVFPLNP------------------------------------VERKVMAVVGGTVTIDCKPFA 452 (1051)
T ss_pred cceEeeeeEEEEEccCCCCCCCc------------------------------------cceEEEEEeCCeEEEeeccCC
Confidence 999999999999876 5444432 123457889999999999999
Q ss_pred ecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEEEEecCCCCCCCCccccc
Q psy7039 382 RPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQGPLDVSD 461 (516)
Q Consensus 382 ~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~v~~~p~~P~~~l~~~~ 461 (516)
.|.+.+.|.+++..+..++++.+..+ .+|.|.+++. +|+|.|+|.|.|..|.....+.|.|++++..-..+.....
T Consensus 453 sP~p~~~W~k~~~~~~~~~r~~i~ed---GtL~I~n~t~-~DaG~YtC~A~N~~G~a~~~~~L~Vkd~tri~~~P~~~~v 528 (1051)
T KOG3513|consen 453 SPKPKVSWLKGGEKLLQSGRIRILED---GTLEISNVTR-SDAGKYTCVAENKLGKAESTGNLIVKDATRITLAPSNTDV 528 (1051)
T ss_pred CCcceEEEEcCCcccccCceEEECCC---CcEEecccCc-ccCcEEEEEEEcccCccceEEEEEEecCceEEeccchhhh
Confidence 99999999999987777788877543 4699999999 9999999999999999999999999987653211222333
Q ss_pred ccCCeEEEEeeCC
Q psy7039 462 ITPESCSLSWKPP 474 (516)
Q Consensus 462 ~~~~~~~l~W~~p 474 (516)
-.++++.|.++..
T Consensus 529 ~~g~~v~l~Ce~s 541 (1051)
T KOG3513|consen 529 KVGESVTLTCEAS 541 (1051)
T ss_pred ccCceEEEEeecc
Confidence 3457788888754
|
|
| >KOG4221|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-31 Score=270.62 Aligned_cols=434 Identities=18% Similarity=0.221 Sum_probs=293.1
Q ss_pred ceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCC--CeEEeEEeecCCcEEEeCCCcCCCeEEEEEEEecCCCCC
Q psy7039 19 DLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTG--NWEKAVVVPAGETSCTVPGLIEGETYQFQVRAVNAAGPG 96 (516)
Q Consensus 19 ~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~--~~~~~~~~~~~~~~~~i~~l~~~~~y~~~~~a~n~~g~~ 96 (516)
....+.....++.+++..- + .+.. .|.|..++. .|.. ....-.+..|.|.+++++|.|.|+|.+.+..-+.
T Consensus 147 ~~~~t~~~g~ta~f~c~vn---~-e~~p--~i~w~kn~~pl~~~~-r~i~lpsG~L~I~~~qp~d~g~yrc~vt~g~~~r 219 (1381)
T KOG4221|consen 147 PESTTLLYGQTALFSCEVN---A-EPVP--TIMWLKNDQPLPLDS-RVIVLPSGALEISGLQPSDTGEYRCVVTGGASQR 219 (1381)
T ss_pred ccceeEecCCcEEEEEEEc---C-ccCc--eeEEecccccccCCC-cEEEcCCCcEEecccccCCCceEEEEEecCCcCC
Confidence 3333334556666666441 1 1111 244554433 3443 3333467889999999999999999998765444
Q ss_pred CCCCCCcceEeccCCC--CCccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEE
Q psy7039 97 EASKPTAPIVAKPKNL--APRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGW 174 (516)
Q Consensus 97 ~~s~~~~~~~~~~~~~--~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W 174 (516)
......+.+. .+... ...| +..+....+.+|+++.|.|.+. +.|.+.+.|
T Consensus 220 ~S~~a~ltv~-s~~~~~~~~~f-l~~p~~~~v~~g~~v~leCvvs--------------------------~~p~p~v~W 271 (1381)
T KOG4221|consen 220 TSNEAELTVL-SDPGALNKLVF-LDEPSNAVVVEGDDVVLECVVS--------------------------GVPKPSVKW 271 (1381)
T ss_pred ccceeEEEec-CCcccccceee-ecCCCccccccCCcEEEEEEec--------------------------CCCCCceEE
Confidence 3222222222 11111 1112 3677788899999999999999 999999999
Q ss_pred eeCCeeeccCCceEEeecCCeeEEEeccCCCCCCeeEEEEEEc--CCCceEEEEEeece-ee----eeccccCCceEEEE
Q psy7039 175 SINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLEN--NLGTATASAHVTGT-EF----TDNNVHEGKAYEYR 247 (516)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~--~~g~~~~~~~~~~~-~~----~~~~l~~g~~~~~~ 247 (516)
.+|+..+.-++ +++. ..+.+.|.|.+++..|+|.|+|.+.| ..+.+.+++.+... .| ......++..++|.
T Consensus 272 lrng~~i~~ds-~riv-l~g~~slliS~a~~~dSg~YtC~Atn~~D~idasaev~V~a~P~~~~~p~~l~A~e~~die~e 349 (1381)
T KOG4221|consen 272 LRNGEKISVDS-YRIV-LVGGSSLLISNATDDDSGKYTCRATNTNDSIDASAEVTVLAPPGFTKAPTTLVAHESMDIEFE 349 (1381)
T ss_pred eeCCeeeeecc-eEEE-EecccceEEeccccccCceEEEEecCCCcccccceEEEEEcCCCCCCCCcceeeeeccceeEe
Confidence 99999998765 3333 23456899999999999999999998 44444444443322 12 22334568889999
Q ss_pred EEEEccCCCCCceeccccccc---ceEEEEEecceeeEEEccCCCCCceEEEEEEEecCCCcceeEEEEEecCCCC----
Q psy7039 248 VSAVNAAGTEKPKISLDALIG---KRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGP---- 320 (516)
Q Consensus 248 ~~~~~~~g~p~p~i~W~~~~~---~~~~~~~~~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~---- 320 (516)
|.+ .|.|.|++.|.+... ............ +.|..+-..|.|.|+|.++|..|.....+.+.+...|..
T Consensus 350 c~~---~g~p~p~v~w~kNgd~~ipsdy~ki~~~~~-lrIlgi~~sdeg~yQcvaen~~G~a~a~a~l~vv~~p~~~~s~ 425 (1381)
T KOG4221|consen 350 CPV---SGKPIPTVRWYKNGDRIIPSDYFKIVGGGN-LRILGIVKSDEGFYQCVAENDAGSAQAAAQLEVVPQPASASSD 425 (1381)
T ss_pred CCC---CCCCcceEEEEecCcccCcccceEecCCCC-cEEEEEecccchhhhhhhccCcccccchhhheeccCCcccccC
Confidence 988 888999999965211 111222233333 999999999999999999999999888888865544321
Q ss_pred --CCCC--ceeeeccCCeeEEEecCCCCCCCCceeeccccccc-------------------------------------
Q psy7039 321 --PTGP--IDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSD------------------------------------- 359 (516)
Q Consensus 321 --p~~p--~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~------------------------------------- 359 (516)
+..| +.+..+....+.++|.+|. ..+..|.-|.-+..+
T Consensus 426 ~~~sap~~lv~~~~~srfi~~tw~~p~-~~~g~i~~~~v~~~~~~~~rer~~~tss~g~~~tv~nl~p~t~Y~~rv~A~n 504 (1381)
T KOG4221|consen 426 LLPSAPRDLVANLVSSRFIQLTWRPPA-QISGNISTYTVFYKVEGDVRERLQNTSSPGIQVTVQNLSPLTMYFFRVRAKN 504 (1381)
T ss_pred ccccCCcceecccccceeEEEeecCcc-ccCCCcceEEEEEecCCchhhhheeccCCceEEEeeecccceeEEEEEeccC
Confidence 2222 5566678899999999888 555566655111000
Q ss_pred -----cccccEE----------EEcCCeEEEEEEEeeecCC----ceEEEECCeecCCCCceEEEEcCCeEEEEEcCcee
Q psy7039 360 -----LSIRDMT----------VLAGEEFTITVPFSGRPKP----TPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKR 420 (516)
Q Consensus 360 -----~~~~~~~----------v~~g~~~~l~C~~~g~p~~----~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~ 420 (516)
.....+. ...+....+.|.+...+++ .|.|++...... +....+....+...++|.++.+
T Consensus 505 ~~g~g~sS~pLkV~t~pEgp~~~~a~ats~~ti~v~WepP~~~n~~I~~yk~~ys~~-~~~~~~~~~~n~~e~ti~gL~k 583 (1381)
T KOG4221|consen 505 EAGSGESSAPLKVTTQPEGPVQLQAYATSPTTILVTWEPPPFGNGPITGYKLFYSED-DTGKELRVENNATEYTINGLEK 583 (1381)
T ss_pred cccCCccCCceEEecCCCCCccccccccCcceEEEEecCCCCCCCCceEEEEEEEcC-CCCceEEEecCccEEEeecCCC
Confidence 0000000 1222234456666666666 688887665443 2233334445566899999999
Q ss_pred cCCceEEEEEEEcCCCceeEEEEEEEe---cCCCCCCCCcccccccCCeEEEEeeCC-CCCCCCCcceEEEEEEecCCCc
Q psy7039 421 ATDSGSYTIQLVNTVGSDSASCKVYVV---DKPSPPQGPLDVSDITPESCSLSWKPP-LDDGGSPITNYVVEKYESATGV 496 (516)
Q Consensus 421 ~~~~g~y~c~a~n~~G~~s~s~~l~v~---~~p~~P~~~l~~~~~~~~~~~l~W~~p-~~~~~~~i~~Y~v~~~~~~~~~ 496 (516)
++.|.|+|.|.|..|.+..+..++|. +.|++|+.++++...+.+++.+.|.+| ....++.|++|.|+|+......
T Consensus 584 -~TeY~~~vvA~N~~G~g~sS~~i~V~Tlsd~PsaPP~Nl~lev~sStsVrVsW~pP~~~t~ng~itgYkIRy~~~~~~~ 662 (1381)
T KOG4221|consen 584 -YTEYSIRVVAYNSAGSGVSSADITVRTLSDVPSAPPQNLSLEVVSSTSVRVSWLPPPSETQNGQITGYKIRYRKLSRED 662 (1381)
T ss_pred -ccceEEEEEEecCCCCCCCCCceEEEeccCCCCCCCcceEEEecCCCeEEEEccCCCcccccceEEEEEEEecccCccc
Confidence 99999999999999998888777776 457777688999999999999999986 4566888999999999776655
|
|
| >KOG4221|consensus | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.6e-29 Score=261.02 Aligned_cols=404 Identities=23% Similarity=0.281 Sum_probs=289.5
Q ss_pred eCCeeEEEecCCCCCCCCceeceEEEEEeCCCCeEEe---EEeecCCcEEEeCCCcC-----CCeEEEEEEEecCCCCCC
Q psy7039 26 DKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKA---VVVPAGETSCTVPGLIE-----GETYQFQVRAVNAAGPGE 97 (516)
Q Consensus 26 ~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~~~~~~---~~~~~~~~~~~i~~l~~-----~~~y~~~~~a~n~~g~~~ 97 (516)
...++.|.+.+-. .++ ..|+|+|++.+..-... ....-.+.+|-|..+.. .++|.|+|.|.-. ..
T Consensus 53 ~~~svlLecs~~~-~~~---~~~~i~wkkDg~~l~e~~d~~~~~LsNgSl~i~~v~~~kh~~~~eg~Yqc~atv~---~~ 125 (1381)
T KOG4221|consen 53 EGSSVLLECSAYA-AGG---TSVKIEWKKDGSQLNEVYDDRRQLLSNGSLYISSVLASKHNKVDEGVYQCLATVE---DV 125 (1381)
T ss_pred cccceEEeccccc-cCC---CCeeEEEccCchhhhhhhhhHHhhccCCceeEeeecccccccccCceEEEEEEcc---cc
Confidence 4457888887732 222 67899998766511111 11122456677776655 7899999998643 22
Q ss_pred CCCCCcceEeccCCCCCccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeC
Q psy7039 98 ASKPTAPIVAKPKNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSIN 177 (516)
Q Consensus 98 ~s~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~ 177 (516)
.+..+....+... ..+.+. ..+.+..+..|+++.|.|.+. +.+.+.+.|.++
T Consensus 126 gsi~Sr~a~v~~a-~~~~f~-~~~~~~t~~~g~ta~f~c~vn--------------------------~e~~p~i~w~kn 177 (1381)
T KOG4221|consen 126 GSILSRTAKVALA-GLADFA-LQPESTTLLYGQTALFSCEVN--------------------------AEPVPTIMWLKN 177 (1381)
T ss_pred ceeecceEEEEec-ccCccc-cCccceeEecCCcEEEEEEEc--------------------------CccCceeEEecc
Confidence 2223332222222 233344 556678899999999999999 889999999999
Q ss_pred CeeeccCCceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCceEE---EEEee-------ceee----eeccccCCce
Q psy7039 178 GQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATA---SAHVT-------GTEF----TDNNVHEGKA 243 (516)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~---~~~~~-------~~~~----~~~~l~~g~~ 243 (516)
+.++..++|+.+. .+..|.|.++++.|.|.|+|.+++....... .+.+. .+.| ....+..|+.
T Consensus 178 ~~pl~~~~r~i~l---psG~L~I~~~qp~d~g~yrc~vt~g~~~r~S~~a~ltv~s~~~~~~~~~fl~~p~~~~v~~g~~ 254 (1381)
T KOG4221|consen 178 DQPLPLDSRVIVL---PSGALEISGLQPSDTGEYRCVVTGGASQRTSNEAELTVLSDPGALNKLVFLDEPSNAVVVEGDD 254 (1381)
T ss_pred cccccCCCcEEEc---CCCcEEecccccCCCceEEEEEecCCcCCccceeEEEecCCcccccceeeecCCCccccccCCc
Confidence 9988887766654 4458999999999999999999986544322 22211 1122 2345678999
Q ss_pred EEEEEEEEccCCCCCceecccccccceE----EEEEecceeeEEEccCCCCCceEEEEEEEecCCCcceeEEEEEecCCC
Q psy7039 244 YEYRVSAVNAAGTEKPKISLDALIGKRI----KEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPG 319 (516)
Q Consensus 244 ~~~~~~~~~~~g~p~p~i~W~~~~~~~~----~~~~~~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~ 319 (516)
+.+.|.+ .|.|+|.+.|.+. +..+ ..........|.|.+++..|+|.|+|.|.|......+.+++.|..+|.
T Consensus 255 v~leCvv---s~~p~p~v~Wlrn-g~~i~~ds~rivl~g~~slliS~a~~~dSg~YtC~Atn~~D~idasaev~V~a~P~ 330 (1381)
T KOG4221|consen 255 VVLECVV---SGVPKPSVKWLRN-GEKISVDSYRIVLVGGSSLLISNATDDDSGKYTCRATNTNDSIDASAEVTVLAPPG 330 (1381)
T ss_pred EEEEEEe---cCCCCCceEEeeC-CeeeeecceEEEEecccceEEeccccccCceEEEEecCCCcccccceEEEEEcCCC
Confidence 9999999 9999999999762 1111 223345678899999999999999999999877788888999999888
Q ss_pred CCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCC
Q psy7039 320 PPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPD 399 (516)
Q Consensus 320 ~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~ 399 (516)
.+..| .+....++.++.|.|.+.|.|.+.+.|+|+|..+..+
T Consensus 331 ~~~~p--------------------------------------~~l~A~e~~die~ec~~~g~p~p~v~w~kNgd~~ips 372 (1381)
T KOG4221|consen 331 FTKAP--------------------------------------TTLVAHESMDIEFECPVSGKPIPTVRWYKNGDRIIPS 372 (1381)
T ss_pred CCCCC--------------------------------------cceeeeeccceeEeCCCCCCCcceEEEEecCcccCcc
Confidence 76553 4455667888999999999999999999887544332
Q ss_pred CceEEEE-------------------------------------------------------------------------
Q psy7039 400 GRIKFET------------------------------------------------------------------------- 406 (516)
Q Consensus 400 ~~~~~~~------------------------------------------------------------------------- 406 (516)
+.+.+..
T Consensus 373 dy~ki~~~~~lrIlgi~~sdeg~yQcvaen~~G~a~a~a~l~vv~~p~~~~s~~~~sap~~lv~~~~~srfi~~tw~~p~ 452 (1381)
T KOG4221|consen 373 DYFKIVGGGNLRILGIVKSDEGFYQCVAENDAGSAQAAAQLEVVPQPASASSDLLPSAPRDLVANLVSSRFIQLTWRPPA 452 (1381)
T ss_pred cceEecCCCCcEEEEEecccchhhhhhhccCcccccchhhheeccCCcccccCccccCCcceecccccceeEEEeecCcc
Confidence 2222111
Q ss_pred --------------------------cCCeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEEEEecCCCCCCCCcccc
Q psy7039 407 --------------------------SENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQGPLDVS 460 (516)
Q Consensus 407 --------------------------~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~v~~~p~~P~~~l~~~ 460 (516)
........+.++.+ ...|.++|.|.|..|++..+..|.|.++|.+|+. +.+.
T Consensus 453 ~~~g~i~~~~v~~~~~~~~rer~~~tss~g~~~tv~nl~p-~t~Y~~rv~A~n~~g~g~sS~pLkV~t~pEgp~~-~~a~ 530 (1381)
T KOG4221|consen 453 QISGNISTYTVFYKVEGDVRERLQNTSSPGIQVTVQNLSP-LTMYFFRVRAKNEAGSGESSAPLKVTTQPEGPVQ-LQAY 530 (1381)
T ss_pred ccCCCcceEEEEEecCCchhhhheeccCCceEEEeeeccc-ceeEEEEEeccCcccCCccCCceEEecCCCCCcc-cccc
Confidence 00113466777888 8888889999999999999999999999988855 8888
Q ss_pred cccCCeEEEEeeCCCCCCCCCcceEEEEEEecCCCc-eeeeEEeeeeeeeeEE
Q psy7039 461 DITPESCSLSWKPPLDDGGSPITNYVVEKYESATGV-SDLFISKSEVKTGSLM 512 (516)
Q Consensus 461 ~~~~~~~~l~W~~p~~~~~~~i~~Y~v~~~~~~~~~-~~~~~~~~~~~~~~l~ 512 (516)
..+..++.+.|++|. .++++|++|.+.|.+.+.+. ...+....+.+..+|.
T Consensus 531 ats~~ti~v~WepP~-~~n~~I~~yk~~ys~~~~~~~~~~~~n~~e~ti~gL~ 582 (1381)
T KOG4221|consen 531 ATSPTTILVTWEPPP-FGNGPITGYKLFYSEDDTGKELRVENNATEYTINGLE 582 (1381)
T ss_pred ccCcceEEEEecCCC-CCCCCceEEEEEEEcCCCCceEEEecCccEEEeecCC
Confidence 889999999999986 57789999999999985555 4444444555555443
|
|
| >KOG4222|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.2e-25 Score=231.40 Aligned_cols=402 Identities=20% Similarity=0.285 Sum_probs=287.5
Q ss_pred CCCCCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCC-CeEEe--EEeecCCcEEEeCCCcCCCeEEEEEE
Q psy7039 12 DEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTG-NWEKA--VVVPAGETSCTVPGLIEGETYQFQVR 88 (516)
Q Consensus 12 ~~p~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~-~~~~~--~~~~~~~~~~~i~~l~~~~~y~~~~~ 88 (516)
+.-..|.++.+ .....+.|...+|.... .=.|.|.+.+. .+... .........|.|.+++..|.|.|.|.
T Consensus 133 dfrv~prd~~~--a~ge~avlEcgpP~ghp-----eptvSw~Kdg~pl~~~~~~~~~lisgG~LlIsnvrksD~GtY~CV 205 (1281)
T KOG4222|consen 133 DFRVSPRDVQA--AVGEEAVLECGPPRGHP-----EPTVSWVKDGKPLDHYDVPIIALISGGNLLISNVRKSDEGTYACV 205 (1281)
T ss_pred hcccCcccccc--cccceeEEeccCCCCCC-----CCcceeecCCCccccccceeEEEecCCcEEEeccccCCCceeeee
Confidence 33445555433 34455566666653111 12344555544 33111 12224677899999999999999999
Q ss_pred EecCCCCCCCCCCCcceEeccCCCCCccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcC
Q psy7039 89 AVNAAGPGEASKPTAPIVAKPKNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEP 168 (516)
Q Consensus 89 a~n~~g~~~~s~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 168 (516)
|.|..|..+.....+.+. .+|.+. ..+....+..|..+.+.|.+. |.|
T Consensus 206 atNmvG~ReS~~A~lsv~-----e~P~f~-~rp~~~~v~~g~~~~f~c~v~--------------------------GdP 253 (1281)
T KOG4222|consen 206 ATNMVGERESIPARLSVQ-----EKPWFW-KRPKDLAVLVGAAAEFDCRVG--------------------------GDP 253 (1281)
T ss_pred ecccccccccccceeeec-----cCCccc-cccccceeecccccccccccC--------------------------CCC
Confidence 999999987665555554 367666 778888999999999999999 999
Q ss_pred ceeeEEeeCCeeeccCCceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEEeecee---e----eeccccCC
Q psy7039 169 FLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVTGTE---F----TDNNVHEG 241 (516)
Q Consensus 169 ~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~~~~~---~----~~~~l~~g 241 (516)
.+.+.|.+++..+.. .|+.+. ....+|.|..++..|.|.|.|.+.|..|..++.....+.. | .+..+.-|
T Consensus 254 ~P~Vrwkk~~~~~P~-~ry~i~--~d~qtl~i~r~tp~deg~y~C~a~n~vG~l~asa~ltV~apP~f~kkp~dq~v~lg 330 (1281)
T KOG4222|consen 254 QPTVRWKKDDPSLPR-SRYSIL--DDTQTLRIDRVTPTDEGTYVCPAENLVGGLEASATLTVQAPPSFGKKPRDQKVALG 330 (1281)
T ss_pred CCceeeeccCCCCCc-cceeee--eccccccccccCCCcccceeeeccccccccccccceEEecCcccccccCccccccC
Confidence 999999997666653 344443 3446899999999999999999999999988776544432 2 34556668
Q ss_pred ceEEEEEEEEccCCCCCceecccccccceEEEE----------EecceeeEEEccCCCCCceEEEEEEEecCCCcceeEE
Q psy7039 242 KAYEYRVSAVNAAGTEKPKISLDALIGKRIKEF----------VTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIE 311 (516)
Q Consensus 242 ~~~~~~~~~~~~~g~p~p~i~W~~~~~~~~~~~----------~~~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~~~~ 311 (516)
....|.|.+ .|.|.|.+.|.......+-.. .....+.|+|.++...|.|.|.|...+..|.......
T Consensus 331 ~~vt~pc~~---~gnP~PavfW~keg~q~llf~~~p~~~~~r~svs~~g~L~it~v~~~d~g~Yvcq~~~~~~ss~~~a~ 407 (1281)
T KOG4222|consen 331 GTVTFPCET---LGNPPPAVFWLKEGSQDLLFSASPPSSNGRGSVSPTGTLTITNVRQSDEGYYVCQTQTSAGSSLTKAY 407 (1281)
T ss_pred ceEEeeeec---CCCCCcceEEeccCcceecccCCCCCcCccceecCCCCcccccccccccceEeeccccccccccccee
Confidence 889999998 899999999976333222221 1233448999999999999999999988888766555
Q ss_pred EEEecCC---CCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeeecCCceE
Q psy7039 312 VVVVSKP---GPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPI 388 (516)
Q Consensus 312 l~v~~~p---~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~ 388 (516)
+.+...- .+|.. . +....+.....+..+.+.|.+.+.|.+.+.
T Consensus 408 ~~qt~~~~~~rPpp~--i--------------------------------~~g~~nQtl~v~s~a~l~c~atg~P~p~i~ 453 (1281)
T KOG4222|consen 408 LEQTDVLTDSRPPPI--I--------------------------------EQGPANQTLPVGSTASLPCSATGAPTPNIS 453 (1281)
T ss_pred EEEEeeeccCCCCce--e--------------------------------eecccccccccCcccccChhhhCCCCCCch
Confidence 5443221 12111 0 012344566678899999999999999999
Q ss_pred EEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEEEEec---------------CCCCC
Q psy7039 389 WTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVD---------------KPSPP 453 (516)
Q Consensus 389 W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~v~~---------------~p~~P 453 (516)
|.+++-.+........ .....+|+|.++.. -|.|.|+|.|.+..|+...++.|+|.. .|++|
T Consensus 454 wl~dg~~v~~~d~~~s--~~~~~~l~i~dl~~-~DtG~YTc~as~~~ges~wSatl~v~~~~~s~q~~r~~D~S~~pS~p 530 (1281)
T KOG4222|consen 454 WLKDGCNVMNPDSRIS--QQEIGSLRIRDLKG-PDTGRYTCIASDESGESTWSATLTVEKAGSSQQFCRCEDPSALPSPP 530 (1281)
T ss_pred hhhcccccccCCcccc--eeeeceeeeeeeec-CCCcceeeeccCcccccccceeeEhhhcCcccccccCCChhhCCCCC
Confidence 9999876643321111 12335799999999 999999999999999998888888852 23334
Q ss_pred CCCcccccccCCeEEEEeeCCCCCCCCCcceEEEEEEecCCCc
Q psy7039 454 QGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATGV 496 (516)
Q Consensus 454 ~~~l~~~~~~~~~~~l~W~~p~~~~~~~i~~Y~v~~~~~~~~~ 496 (516)
..-.+.+++..+++|+|.+....+..++.+|+++|..-..+.
T Consensus 531 -~~p~v~~v~~~~v~LsW~~~s~sg~vP~s~yiieafs~~~~e 572 (1281)
T KOG4222|consen 531 -GTPGVVNVSRTSVTLSWQPTSPSGAVPASGYIIEAFSPDLGE 572 (1281)
T ss_pred -CCCccccCCCceEEecccCCCCCCccccchhHHHHhhhhhcc
Confidence 334578889999999999877667899999999986554444
|
|
| >PHA02785 IL-beta-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.5e-22 Score=191.63 Aligned_cols=251 Identities=19% Similarity=0.178 Sum_probs=168.6
Q ss_pred eEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEeecCCeeEEEeccC
Q psy7039 124 VKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFC 203 (516)
Q Consensus 124 ~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~ 203 (516)
..+.+|+++.|.|...+. ...|.|.++++|++++.... +... ......|.|.++
T Consensus 36 ~~~~~ge~~~l~C~~~~~---------------------~~~g~p~~~i~W~K~g~~~~---~~~~--~~~g~~l~i~~~ 89 (326)
T PHA02785 36 FMELENEPVILPCPQINT---------------------LSSGYNILDILWEKRGADND---RIIP--IDNGSNMLILNP 89 (326)
T ss_pred hhhhcCCCEEEECCCccc---------------------cccCCCCceEEEEECCCccc---eEEE--ccCCceEEEccc
Confidence 345679999999997410 01177889999999875321 1111 122346889999
Q ss_pred CCCCCeeEEEEEEcCCCceEEEEEeeceee---------eeccccCCceEEEEEEEEcc--CCCCCceecccccccceEE
Q psy7039 204 SRSDTGHYSLTLENNLGTATASAHVTGTEF---------TDNNVHEGKAYEYRVSAVNA--AGTEKPKISLDALIGKRIK 272 (516)
Q Consensus 204 ~~~d~g~Y~c~~~~~~g~~~~~~~~~~~~~---------~~~~l~~g~~~~~~~~~~~~--~g~p~p~i~W~~~~~~~~~ 272 (516)
..+|+|.|+|.++|..|....+..+.+... ....+.+|....+.|..+.. .+.++|.++|.+.......
T Consensus 90 ~~~DsG~Y~C~a~N~~g~~~~s~~L~V~~~~~~~~~~~~~~~~~~~g~~~~i~C~~~~~~~~~~~~~~i~W~k~~~~~~~ 169 (326)
T PHA02785 90 TQSDSGIYICITKNETYCDMMSLNLTIVSVSESNIDLISYPQIVNERSTGEMVCPNINAFIASNVNADIIWSGHRRLRNK 169 (326)
T ss_pred CcccCeEEEEEEECCCcceEEEEEEEEEecCCCccceeeccceecccCcEEEECCChhhcccCCCCceEEEccCCccCCc
Confidence 999999999999999887665543332111 12345678888899974321 4568899999652211111
Q ss_pred EEEecceeeEEEccCCCCCceEEEEEEEecCCCcce----eEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCC
Q psy7039 273 EFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMA----DIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGT 348 (516)
Q Consensus 273 ~~~~~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~----~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~ 348 (516)
.......+.|.|.+++.+|.|.|+|.|.|..|.... .+.+.|..+..+|..
T Consensus 170 r~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~~~~~t~~v~l~V~~~~~pp~~------------------------- 224 (326)
T PHA02785 170 RLKQRTPGIITIEDVRKNDAGYYTCVLKYIYGDKTYNVTRIVKLEVRDRIIPPTM------------------------- 224 (326)
T ss_pred ceEecCCCeEEEeecChhhCeEEEEEEEeccCCEEEeEEEEEEEEEeccCCCcee-------------------------
Confidence 111233568999999999999999999998876543 234444432222210
Q ss_pred ceeeccccccccccccEEEEcCCeEEEEEEEeeecCC---ceEEEECCeecCCCC-----ceEEEEcC--------CeEE
Q psy7039 349 PITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKP---TPIWTVNGDEVSPDG-----RIKFETSE--------NQTI 412 (516)
Q Consensus 349 ~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~---~i~W~~~~~~l~~~~-----~~~~~~~~--------~~~~ 412 (516)
..+....+..|+.+.|.|.+.|.|.+ .+.|.++|..+.... ++...... ....
T Consensus 225 -----------~~p~~~~~~~G~~v~L~C~a~g~P~~~~~~v~W~kng~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (326)
T PHA02785 225 -----------QLPEGVVTSIGSNLTIACRVSLRPPTTDADVFWISNGMYYEEDDEDGDGRISVANKIYTTDKRRVITSR 293 (326)
T ss_pred -----------cCCCcEEecCCCcEEEEEEEECCCCCCCceEEEEECCEECCCcCCCCceeEEEecCccccccceeeeEE
Confidence 12245667889999999999998864 799999998875321 22222110 1357
Q ss_pred EEEcCceecCCceEEEEEEEcCCCc
Q psy7039 413 YRNKSAKRATDSGSYTIQLVNTVGS 437 (516)
Q Consensus 413 l~i~~~~~~~~~g~y~c~a~n~~G~ 437 (516)
|+|.++.. .|.|.|.|.|.|..|.
T Consensus 294 L~I~~V~~-~D~G~Y~C~A~n~~~~ 317 (326)
T PHA02785 294 LNINPVKE-EDATTFTCMAFTIPSI 317 (326)
T ss_pred EEECCcch-hcCeeeEEEEEeccCc
Confidence 99999999 9999999999998854
|
|
| >KOG4194|consensus | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.9e-22 Score=192.10 Aligned_cols=268 Identities=22% Similarity=0.338 Sum_probs=204.7
Q ss_pred CCCccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecC--cCceeeEEeeCCeeeccC---Cc
Q psy7039 112 LAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLS--EPFLNHGWSINGQVCQIG---GR 186 (516)
Q Consensus 112 ~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~p~~~i~W~~~~~~~~~~---~~ 186 (516)
.+|+|. ..|..+.+..|..++|+|.+. + ..+..+.|+++......- +.
T Consensus 502 pkpqI~-~qPe~~~al~g~nirftC~a~--------------------------sssasplsi~WR~dnevq~rv~ved~ 554 (873)
T KOG4194|consen 502 PKPQIV-TQPETVSALIGENIRFTCNAY--------------------------SSSASPLSIEWRKDNEVQPRVDVEDF 554 (873)
T ss_pred CCccee-cCchHhhhhhccceEEEEEec--------------------------cCCCCCceeEeeeccccCcccchhcc
Confidence 467777 788888899999999999988 4 566789999876533211 11
Q ss_pred eEEee----------cCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEE-Eeec---eee----eeccccCCceEEEEE
Q psy7039 187 ADVQT----------TKSETVLDIPFCSRSDTGHYSLTLENNLGTATASA-HVTG---TEF----TDNNVHEGKAYEYRV 248 (516)
Q Consensus 187 ~~~~~----------~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~-~~~~---~~~----~~~~l~~g~~~~~~~ 248 (516)
..+.. ....+.|++.|++..|+|.|.|.++|.+|+..+.. ...+ ..| .+..+..|+...+.|
T Consensus 555 a~~~~q~r~~~~~e~~~~~~~L~L~nVt~td~grYQCVvtN~FGStysqk~KltV~~~PsFtktP~dltl~tg~mArl~C 634 (873)
T KOG4194|consen 555 ATFLSQNRNGTFGEREEYTAILHLDNVTFTDEGRYQCVVTNHFGSTYSQKAKLTVNQAPSFTKTPEDLTLRTGQMARLEC 634 (873)
T ss_pred hhhhhhhccCccchhhhhhheeeeeeeecccCceEEEEEecccCcchhheeEEEeeccCccccCcccceeecccceeeee
Confidence 11111 11246899999999999999999999999875443 1111 222 345677899999999
Q ss_pred EEEccCCCCCceecccccccc------eEEEEEecceeeEEEccCCCCCceEEEEEEEecCCCcceeEEEEEecCCCCCC
Q psy7039 249 SAVNAAGTEKPKISLDALIGK------RIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPT 322 (516)
Q Consensus 249 ~~~~~~g~p~p~i~W~~~~~~------~~~~~~~~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~p~ 322 (516)
.| .|.|.|.|.|.+..+. ..+..+...+..+.|.|++.+|+|.|+|.|.|.+|..++.+.++|.+.|.+..
T Consensus 635 aA---tG~P~PeIawqkdggtdFPAA~eRRl~Vmpedd~f~Itnvk~eD~GiYtC~A~n~AG~isanAtL~V~e~p~f~~ 711 (873)
T KOG4194|consen 635 AA---TGHPRPEIAWQKDGGTDFPAARERRLHVMPEDDVFFITNVKIEDQGIYTCTAQNVAGQISANATLTVLETPSFSI 711 (873)
T ss_pred ec---cCCCCcceeehhcCCCCCchhhhheeeecCCCCEEEEecccccccceeEEeeeccccceeeceEEEEecCCcccc
Confidence 98 9999999999764433 22445567788999999999999999999999999999999999999886532
Q ss_pred CCceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeeecC-CceEEEECCeecCCCCc
Q psy7039 323 GPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPK-PTPIWTVNGDEVSPDGR 401 (516)
Q Consensus 323 ~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~-~~i~W~~~~~~l~~~~~ 401 (516)
+..+..+..|+.+.+.|.+.+.|. |++.|+++++++....+
T Consensus 712 --------------------------------------PL~~~~V~~get~vlqC~a~~~~a~pr~~W~k~d~pil~t~r 753 (873)
T KOG4194|consen 712 --------------------------------------PLEDQLVVVGETLVLQCLAEGAPADPRLEWFKEDKPILITER 753 (873)
T ss_pred --------------------------------------cccceEEEecceEEEEEecCCCCCCccccccCCCCceEEeec
Confidence 245678999999999999999887 89999999987754443
Q ss_pred eEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEEEEecCC
Q psy7039 402 IKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKP 450 (516)
Q Consensus 402 ~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~v~~~p 450 (516)
-.+ ..+..-|++.+... .|+|.|+|...|..|.......+.+...+
T Consensus 754 h~f--~d~dQllvv~~~~~-~daG~yTcem~~~~~~~~~~i~l~~~~~~ 799 (873)
T KOG4194|consen 754 HTF--PDGDQLLVVKENLV-EDAGIYTCEMSNTLGTERIHICLLVYQKK 799 (873)
T ss_pred ccC--CCCCeEEEEEehhh-hhcceEEEEEEeeccceeeEEEEEEeecC
Confidence 222 23444677888888 99999999999999987666666665443
|
|
| >KOG4222|consensus | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.2e-20 Score=192.95 Aligned_cols=288 Identities=20% Similarity=0.233 Sum_probs=217.9
Q ss_pred CeEEEEEEEecCCCCCCCCCCCcceEeccCCCCCccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCcc
Q psy7039 81 ETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTK 160 (516)
Q Consensus 81 ~~y~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~ 160 (516)
|.|.|+|.|.|..|....-...+.+..... .+- ..+..+.+..|+.+.|.|.-. +
T Consensus 103 d~G~y~cvasn~~g~avSr~a~L~vavlrd----dfr-v~prd~~~a~ge~avlEcgpP---------~----------- 157 (1281)
T KOG4222|consen 103 DHGVYSCVASNRLGEAVSRGASLIVAVLRD----DFR-VSPRDVQAAVGEEAVLECGPP---------R----------- 157 (1281)
T ss_pred CCceeEeeecCccceeeecCceEEEEEech----hcc-cCcccccccccceeEEeccCC---------C-----------
Confidence 899999999999998776555555544211 122 445568888999999999755 1
Q ss_pred ceeecCcCceeeEEeeCCeeeccC--CceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEE---Eeece----
Q psy7039 161 GWVKLSEPFLNHGWSINGQVCQIG--GRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASA---HVTGT---- 231 (516)
Q Consensus 161 ~~~~~~~p~~~i~W~~~~~~~~~~--~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~---~~~~~---- 231 (516)
+.|.+.+.|.++++++... .++.+. ....|.|.++...|+|.|.|.+.|..|..+... .+...
T Consensus 158 -----ghpeptvSw~Kdg~pl~~~~~~~~~li---sgG~LlIsnvrksD~GtY~CVatNmvG~ReS~~A~lsv~e~P~f~ 229 (1281)
T KOG4222|consen 158 -----GHPEPTVSWVKDGKPLDHYDVPIIALI---SGGNLLISNVRKSDEGTYACVATNMVGERESIPARLSVQEKPWFW 229 (1281)
T ss_pred -----CCCCCcceeecCCCccccccceeEEEe---cCCcEEEeccccCCCceeeeeecccccccccccceeeeccCCccc
Confidence 8899999999999988732 223333 234799999999999999999999999876543 22111
Q ss_pred -eeeeccccCCceEEEEEEEEccCCCCCceeccccc--ccceEEEEEecceeeEEEccCCCCCceEEEEEEEecCCCcce
Q psy7039 232 -EFTDNNVHEGKAYEYRVSAVNAAGTEKPKISLDAL--IGKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMA 308 (516)
Q Consensus 232 -~~~~~~l~~g~~~~~~~~~~~~~g~p~p~i~W~~~--~~~~~~~~~~~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~ 308 (516)
...+..+..|....+.|.+ .|.|.|++.|.+. .....+..+..+..+|.|.++.+.|.|.|.|.+.|..|...+
T Consensus 230 ~rp~~~~v~~g~~~~f~c~v---~GdP~P~Vrwkk~~~~~P~~ry~i~~d~qtl~i~r~tp~deg~y~C~a~n~vG~l~a 306 (1281)
T KOG4222|consen 230 KRPKDLAVLVGAAAEFDCRV---GGDPQPTVRWKKDDPSLPRSRYSILDDTQTLRIDRVTPTDEGTYVCPAENLVGGLEA 306 (1281)
T ss_pred cccccceeeccccccccccc---CCCCCCceeeeccCCCCCccceeeeeccccccccccCCCcccceeeecccccccccc
Confidence 1234556678889999988 9999999999762 222223333455678999999999999999999999999999
Q ss_pred eEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeeecCCceE
Q psy7039 309 DIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPI 388 (516)
Q Consensus 309 ~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~ 388 (516)
...++|..+|..-.. +.+..+..|..+.|.|.+.|+|.|.+.
T Consensus 307 sa~ltV~apP~f~kk--------------------------------------p~dq~v~lg~~vt~pc~~~gnP~Pavf 348 (1281)
T KOG4222|consen 307 SATLTVQAPPSFGKK--------------------------------------PRDQKVALGGTVTFPCETLGNPPPAVF 348 (1281)
T ss_pred ccceEEecCcccccc--------------------------------------cCccccccCceEEeeeecCCCCCcceE
Confidence 999999998876533 355678889999999999999999999
Q ss_pred EEECCeec--------CCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEEEE
Q psy7039 389 WTVNGDEV--------SPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYV 446 (516)
Q Consensus 389 W~~~~~~l--------~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~v 446 (516)
|.+.+... ..+.+..+. ... .|+|+++.. .|.|.|.|...+..|.......+.+
T Consensus 349 W~keg~q~llf~~~p~~~~~r~svs--~~g-~L~it~v~~-~d~g~Yvcq~~~~~~ss~~~a~~~q 410 (1281)
T KOG4222|consen 349 WLKEGSQDLLFSASPPSSNGRGSVS--PTG-TLTITNVRQ-SDEGYYVCQTQTSAGSSLTKAYLEQ 410 (1281)
T ss_pred EeccCcceecccCCCCCcCccceec--CCC-Ccccccccc-cccceEeecccccccccccceeEEE
Confidence 99987531 112333333 333 899999999 9999999999999988655544444
|
|
| >KOG4194|consensus | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.3e-18 Score=169.15 Aligned_cols=216 Identities=21% Similarity=0.278 Sum_probs=169.7
Q ss_pred CcEEEeCCCcCCCeEEEEEEEecCCCCCCCCCCCcceEeccCCCCCccccCcccceEEecCCeEEEEEeeeeccccccCc
Q psy7039 69 ETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSP 148 (516)
Q Consensus 69 ~~~~~i~~l~~~~~y~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~ 148 (516)
...|.+.++...++|+|+|.+.|..|.....+..+.+. ..|.+. ..|.++.+..|+.+.|.|.++
T Consensus 573 ~~~L~L~nVt~td~grYQCVvtN~FGStysqk~KltV~-----~~PsFt-ktP~dltl~tg~mArl~CaAt--------- 637 (873)
T KOG4194|consen 573 TAILHLDNVTFTDEGRYQCVVTNHFGSTYSQKAKLTVN-----QAPSFT-KTPEDLTLRTGQMARLECAAT--------- 637 (873)
T ss_pred hheeeeeeeecccCceEEEEEecccCcchhheeEEEee-----ccCccc-cCcccceeecccceeeeeecc---------
Confidence 45688999999999999999999999876655555554 367777 888999999999999999999
Q ss_pred cccccccccCccceeecCcCceeeEEeeCCee-eccCCceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEE
Q psy7039 149 LRALGVRANSTKGWVKLSEPFLNHGWSINGQV-CQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAH 227 (516)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~-~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~ 227 (516)
|.|.|.|.|.++|.. ++....-++.-......+.|.|++.+|+|.|+|.+.|.+|...+++.
T Consensus 638 -----------------G~P~PeIawqkdggtdFPAA~eRRl~Vmpedd~f~Itnvk~eD~GiYtC~A~n~AG~isanAt 700 (873)
T KOG4194|consen 638 -----------------GHPRPEIAWQKDGGTDFPAARERRLHVMPEDDVFFITNVKIEDQGIYTCTAQNVAGQISANAT 700 (873)
T ss_pred -----------------CCCCcceeehhcCCCCCchhhhheeeecCCCCEEEEecccccccceeEEeeeccccceeeceE
Confidence 999999999997765 54332223333444568999999999999999999999999888776
Q ss_pred eecee---e----eeccccCCceEEEEEEEEccCCCCC-ceecccccccce-EEE--EEecceeeEEEccCCCCCceEEE
Q psy7039 228 VTGTE---F----TDNNVHEGKAYEYRVSAVNAAGTEK-PKISLDALIGKR-IKE--FVTSTTASLNIKNSVRKDSGIYK 296 (516)
Q Consensus 228 ~~~~~---~----~~~~l~~g~~~~~~~~~~~~~g~p~-p~i~W~~~~~~~-~~~--~~~~~~~~l~i~~l~~~d~g~y~ 296 (516)
..+.+ | ....+..|+...+.|.+ .|.|+ |.+.|++....- +.. .....+.-|++.+...+|.|.|+
T Consensus 701 L~V~e~p~f~~PL~~~~V~~get~vlqC~a---~~~~a~pr~~W~k~d~pil~t~rh~f~d~dQllvv~~~~~~daG~yT 777 (873)
T KOG4194|consen 701 LTVLETPSFSIPLEDQLVVVGETLVLQCLA---EGAPADPRLEWFKEDKPILITERHTFPDGDQLLVVKENLVEDAGIYT 777 (873)
T ss_pred EEEecCCcccccccceEEEecceEEEEEec---CCCCCCccccccCCCCceEEeecccCCCCCeEEEEEehhhhhcceEE
Confidence 54433 2 34567789999999998 88887 999998743322 222 23455667888899999999999
Q ss_pred EEEEecCCCcceeEEEEEecCCC
Q psy7039 297 IEAKNDYGIDMADIEVVVVSKPG 319 (516)
Q Consensus 297 c~a~n~~g~~~~~~~l~v~~~p~ 319 (516)
|...|..|.....+.+.+...+.
T Consensus 778 cem~~~~~~~~~~i~l~~~~~~~ 800 (873)
T KOG4194|consen 778 CEMSNTLGTERIHICLLVYQKKK 800 (873)
T ss_pred EEEEeeccceeeEEEEEEeecCC
Confidence 99999999887777777665544
|
|
| >PHA02785 IL-beta-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=6.6e-14 Score=135.85 Aligned_cols=203 Identities=13% Similarity=0.060 Sum_probs=129.5
Q ss_pred CcEEEeCCCcCCCeEEEEEEEecCCCCCCCCCCCcceEeccCCCCCccccCcccceEEecCCeEEEEEeeeeccccccCc
Q psy7039 69 ETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSP 148 (516)
Q Consensus 69 ~~~~~i~~l~~~~~y~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~ 148 (516)
...+.|..++..|.|.|+|.|.|..|....+ ..+.+.... +|.+. ..+....+.+|..+.|.|....
T Consensus 81 g~~l~i~~~~~~DsG~Y~C~a~N~~g~~~~s-~~L~V~~~~---~~~~~-~~~~~~~~~~g~~~~i~C~~~~-------- 147 (326)
T PHA02785 81 GSNMLILNPTQSDSGIYICITKNETYCDMMS-LNLTIVSVS---ESNID-LISYPQIVNERSTGEMVCPNIN-------- 147 (326)
T ss_pred CceEEEcccCcccCeEEEEEEECCCcceEEE-EEEEEEecC---CCccc-eeeccceecccCcEEEECCChh--------
Confidence 3458899999999999999999987643321 222222221 23232 1223345678999999997210
Q ss_pred cccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEE--
Q psy7039 149 LRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASA-- 226 (516)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~-- 226 (516)
.|+ .+.+.+.++|+++.. + ...++... ..+.|.|.+++.+|+|.|+|.+.|..|......
T Consensus 148 ------------~~~-~~~~~~~i~W~k~~~-~-~~~r~~~~---~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~~~~~t~ 209 (326)
T PHA02785 148 ------------AFI-ASNVNADIIWSGHRR-L-RNKRLKQR---TPGIITIEDVRKNDAGYYTCVLKYIYGDKTYNVTR 209 (326)
T ss_pred ------------hcc-cCCCCceEEEccCCc-c-CCcceEec---CCCeEEEeecChhhCeEEEEEEEeccCCEEEeEEE
Confidence 001 157889999987542 2 23343332 235899999999999999999999877654321
Q ss_pred --Eeece---------eeeeccccCCceEEEEEEEEccCCCCC---ceecccccc----c------ceEEEEE-------
Q psy7039 227 --HVTGT---------EFTDNNVHEGKAYEYRVSAVNAAGTEK---PKISLDALI----G------KRIKEFV------- 275 (516)
Q Consensus 227 --~~~~~---------~~~~~~l~~g~~~~~~~~~~~~~g~p~---p~i~W~~~~----~------~~~~~~~------- 275 (516)
.+.+. ......+..|+.+.+.|.+ .|.|. +.+.|.+.. . .++....
T Consensus 210 ~v~l~V~~~~~pp~~~~p~~~~~~~G~~v~L~C~a---~g~P~~~~~~v~W~kng~~i~~~~~~~~~~~~~~~~~~~~~~ 286 (326)
T PHA02785 210 IVKLEVRDRIIPPTMQLPEGVVTSIGSNLTIACRV---SLRPPTTDADVFWISNGMYYEEDDEDGDGRISVANKIYTTDK 286 (326)
T ss_pred EEEEEEeccCCCceecCCCcEEecCCCcEEEEEEE---ECCCCCCCceEEEEECCEECCCcCCCCceeEEEecCcccccc
Confidence 11111 0112234569999999999 66565 478995521 0 1111110
Q ss_pred -ecceeeEEEccCCCCCceEEEEEEEecCCC
Q psy7039 276 -TSTTASLNIKNSVRKDSGIYKIEAKNDYGI 305 (516)
Q Consensus 276 -~~~~~~l~i~~l~~~d~g~y~c~a~n~~g~ 305 (516)
......|.|.+++.+|.|.|+|.|.|..|.
T Consensus 287 ~~~~~~~L~I~~V~~~D~G~Y~C~A~n~~~~ 317 (326)
T PHA02785 287 RRVITSRLNINPVKEEDATTFTCMAFTIPSI 317 (326)
T ss_pred ceeeeEEEEECCcchhcCeeeEEEEEeccCc
Confidence 012468999999999999999999998744
|
|
| >cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK) | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.5e-14 Score=114.01 Aligned_cols=92 Identities=30% Similarity=0.478 Sum_probs=85.4
Q ss_pred ccccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeE
Q psy7039 361 SIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSA 440 (516)
Q Consensus 361 ~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~ 440 (516)
.+.++.+..|+.+.|.|.+.|.|++.+.|++++..+..+.++.+......+.|.|.++.. .|+|.|+|.|.|..|....
T Consensus 6 ~p~~~~v~~G~~v~l~C~~~G~p~p~v~W~kdg~~l~~~~~~~~~~~~~~s~L~I~~~~~-~D~G~Ytc~a~N~~G~~~~ 84 (98)
T cd05762 6 FPEDMKVRAGESVELFCKVTGTQPITCTWMKFRKQIQEGEGIKIENTENSSKLTITEGQQ-EHCGCYTLEVENKLGSRQA 84 (98)
T ss_pred CCcCEEEECCCEEEEEEEEcccCCCceEEEECCEEecCCCcEEEEecCCeeEEEECCCCh-hhCEEEEEEEEcCCCceeE
Confidence 356788999999999999999999999999999999877788887777788999999999 9999999999999999999
Q ss_pred EEEEEEecCCCCC
Q psy7039 441 SCKVYVVDKPSPP 453 (516)
Q Consensus 441 s~~l~v~~~p~~P 453 (516)
++.|+|.++|.||
T Consensus 85 ~~~l~V~~~P~pP 97 (98)
T cd05762 85 QVNLTVVDKPDPP 97 (98)
T ss_pred EEEEEEecCCCCC
Confidence 9999999999988
|
Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has |
| >PHA02826 IL-1 receptor-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.4e-13 Score=122.82 Aligned_cols=155 Identities=18% Similarity=0.155 Sum_probs=111.9
Q ss_pred eccccCCceEEEEEEEEccC-------C-CCCceecccccccceEE--------------EEEecceeeEEEccCCCCCc
Q psy7039 235 DNNVHEGKAYEYRVSAVNAA-------G-TEKPKISLDALIGKRIK--------------EFVTSTTASLNIKNSVRKDS 292 (516)
Q Consensus 235 ~~~l~~g~~~~~~~~~~~~~-------g-~p~p~i~W~~~~~~~~~--------------~~~~~~~~~l~i~~l~~~d~ 292 (516)
...+.+|+.+.+.|.+.+.. . ...+.+.|.+....... .........|.|.+++.+|+
T Consensus 31 ~~~v~eGe~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~~s~~~v~~~~~~~~~~~i~~~~~~~r~~~L~I~~v~~~Ds 110 (227)
T PHA02826 31 PVYAKFGDPMVLLCTGKHYKKSIFFDKTFITSYNVTWSKTDSLAFVRDSGARTKIKKITHNEIGDRSENLWIGNVINIDE 110 (227)
T ss_pred eEEecCCCCEEEEccccccccccccccccCCCccEEEEeCCeEEEEEcCCCccccccccccceecCCCeEEECCCChHHC
Confidence 34567899999999872210 0 34558889764321100 00012356899999999999
Q ss_pred eEEEEEEEecCCCcceeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCe
Q psy7039 293 GIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEE 372 (516)
Q Consensus 293 g~y~c~a~n~~g~~~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~ 372 (516)
|.|+|.|.|..+....++.|.|...+ ....+..|+.
T Consensus 111 G~Y~C~a~N~~~~~~~~i~L~V~~~~--------------------------------------------~~~~~~~G~~ 146 (227)
T PHA02826 111 GIYICTISSGNICEESTIRLTFDSGT--------------------------------------------INYQFNSGKD 146 (227)
T ss_pred EEEEEEEEECCcceEEEEEEEEecCC--------------------------------------------ccceEecCCC
Confidence 99999999988887777777773211 1134678999
Q ss_pred EEEEEEEee-----ecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCC
Q psy7039 373 FTITVPFSG-----RPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVG 436 (516)
Q Consensus 373 ~~l~C~~~g-----~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G 436 (516)
+.|.|.+.+ .|.|.+.|++++..+..+.++.+. .+...|.|.++.. +|+|.|+|.|....+
T Consensus 147 v~L~C~~~~~~~~~~p~p~I~WyKng~~l~~~~r~~~~--~~~~~L~I~~V~~-~DsG~YtC~a~~~~~ 212 (227)
T PHA02826 147 SKLHCYGTDGISSTFKDYTLTWYKNGNIVLYTDRIQLR--NNNSTLVIKSATH-DDSGIYTCNLRFNKN 212 (227)
T ss_pred EEEEeeCCCCccccCCCceEEEEECCEECCCCCCEEEe--CCCCEEEECcCCH-HhCEEEEEEEEEeEC
Confidence 999999853 457899999999998766666554 3344799999999 999999999998753
|
|
| >PHA02826 IL-1 receptor-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=4.9e-13 Score=121.75 Aligned_cols=168 Identities=17% Similarity=0.166 Sum_probs=107.9
Q ss_pred ccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecC-cCceeeEEeeCCeee--c-cCCc---e--E-Ee
Q psy7039 121 LNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLS-EPFLNHGWSINGQVC--Q-IGGR---A--D-VQ 190 (516)
Q Consensus 121 ~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~p~~~i~W~~~~~~~--~-~~~~---~--~-~~ 190 (516)
...+.+.+|+++.|.|.+.+ |+++- +.... ....++.|++.+... . .+.+ . . -+
T Consensus 29 ~~~~~v~eGe~v~L~C~~~~---~~~~~-------------~~~~~~~~~~~V~W~k~~s~~~v~~~~~~~~~~~i~~~~ 92 (227)
T PHA02826 29 LTPVYAKFGDPMVLLCTGKH---YKKSI-------------FFDKTFITSYNVTWSKTDSLAFVRDSGARTKIKKITHNE 92 (227)
T ss_pred cceEEecCCCCEEEEccccc---ccccc-------------ccccccCCCccEEEEeCCeEEEEEcCCCccccccccccc
Confidence 34578899999999999861 11000 00001 345678888876431 0 1111 0 0 00
Q ss_pred ecCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEEeeceee-eeccccCCceEEEEEEEEcc--CCCCCceecccccc
Q psy7039 191 TTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVTGTEF-TDNNVHEGKAYEYRVSAVNA--AGTEKPKISLDALI 267 (516)
Q Consensus 191 ~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~~~~~~-~~~~l~~g~~~~~~~~~~~~--~g~p~p~i~W~~~~ 267 (516)
.......|.|.+++.+|+|.|.|.+.|..+.....+.+.+... ....+..|....+.|.+... .|.|.|.++|.+..
T Consensus 93 ~~~r~~~L~I~~v~~~DsG~Y~C~a~N~~~~~~~~i~L~V~~~~~~~~~~~G~~v~L~C~~~~~~~~~~p~p~I~WyKng 172 (227)
T PHA02826 93 IGDRSENLWIGNVINIDEGIYICTISSGNICEESTIRLTFDSGTINYQFNSGKDSKLHCYGTDGISSTFKDYTLTWYKNG 172 (227)
T ss_pred eecCCCeEEECCCChHHCEEEEEEEEECCcceEEEEEEEEecCCccceEecCCCEEEEeeCCCCccccCCCceEEEEECC
Confidence 1123468999999999999999999998887766665444221 22345679999999987322 14578999997621
Q ss_pred c---ceEEEEEecceeeEEEccCCCCCceEEEEEEEecCC
Q psy7039 268 G---KRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYG 304 (516)
Q Consensus 268 ~---~~~~~~~~~~~~~l~i~~l~~~d~g~y~c~a~n~~g 304 (516)
. ....+........|.|.+++.+|+|.|+|.|....+
T Consensus 173 ~~l~~~~r~~~~~~~~~L~I~~V~~~DsG~YtC~a~~~~~ 212 (227)
T PHA02826 173 NIVLYTDRIQLRNNNSTLVIKSATHDDSGIYTCNLRFNKN 212 (227)
T ss_pred EECCCCCCEEEeCCCCEEEECcCCHHhCEEEEEEEEEeEC
Confidence 1 111222334556899999999999999999997643
|
|
| >cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK) | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.1e-12 Score=103.51 Aligned_cols=87 Identities=24% Similarity=0.337 Sum_probs=77.7
Q ss_pred CcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEeecCCeeEE
Q psy7039 119 STLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTTKSETVL 198 (516)
Q Consensus 119 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l 198 (516)
..+..+.+..|+.+.|.|.+. |.|.+.+.|++++..+....++.+......+.|
T Consensus 5 ~~p~~~~v~~G~~v~l~C~~~--------------------------G~p~p~v~W~kdg~~l~~~~~~~~~~~~~~s~L 58 (98)
T cd05762 5 QFPEDMKVRAGESVELFCKVT--------------------------GTQPITCTWMKFRKQIQEGEGIKIENTENSSKL 58 (98)
T ss_pred ECCcCEEEECCCEEEEEEEEc--------------------------ccCCCceEEEECCEEecCCCcEEEEecCCeeEE
Confidence 556778999999999999999 999999999999999987778888777778899
Q ss_pred EeccCCCCCCeeEEEEEEcCCCceEEEEEeece
Q psy7039 199 DIPFCSRSDTGHYSLTLENNLGTATASAHVTGT 231 (516)
Q Consensus 199 ~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~~~~ 231 (516)
.|.++..+|+|.|+|.+.|..|...+.+.+.+.
T Consensus 59 ~I~~~~~~D~G~Ytc~a~N~~G~~~~~~~l~V~ 91 (98)
T cd05762 59 TITEGQQEHCGCYTLEVENKLGSRQAQVNLTVV 91 (98)
T ss_pred EECCCChhhCEEEEEEEEcCCCceeEEEEEEEe
Confidence 999999999999999999999998877655443
|
Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has |
| >cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C) | Back alignment and domain information |
|---|
Probab=99.42 E-value=3.1e-12 Score=98.25 Aligned_cols=83 Identities=35% Similarity=0.632 Sum_probs=73.1
Q ss_pred ccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCC-CceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEE
Q psy7039 363 RDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPD-GRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSAS 441 (516)
Q Consensus 363 ~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~-~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s 441 (516)
..+.+..|+.+.|.|.+.|.|.|.+.|++++..+... .++.+......+.|.|.++.. .|+|.|+|.|.|..|....+
T Consensus 3 ~~~~v~~G~~v~l~c~~~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~L~I~~~~~-~D~G~Y~c~a~N~~G~~~~~ 81 (86)
T cd05894 3 NTIVVVAGNKLRLDVPISGEPAPTVTWSRGDKAFTETEGRVRVESYKDLSSFVIEGAER-EDEGVYTITVTNPVGEDHAS 81 (86)
T ss_pred CEEEEEcCCEEEEEeeEeecCCCeEEEEECCEECccCCCeEEEEEcCCeEEEEECCCcc-CcCEEEEEEEEeCCCcEEEE
Confidence 3567899999999999999999999999999988653 467776666678999999999 99999999999999998888
Q ss_pred EEEEE
Q psy7039 442 CKVYV 446 (516)
Q Consensus 442 ~~l~v 446 (516)
+.|.|
T Consensus 82 ~~l~V 86 (86)
T cd05894 82 LFVKV 86 (86)
T ss_pred EEEEC
Confidence 87764
|
Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain. |
| >cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM) | Back alignment and domain information |
|---|
Probab=99.40 E-value=4.1e-12 Score=98.07 Aligned_cols=83 Identities=20% Similarity=0.395 Sum_probs=70.9
Q ss_pred CCeEEEEEEEeeecCCceEEEECCeecCCC-CceEEEEc--CC--eEEEEEcCceecCCceEEEEEEEcCCCceeEEEEE
Q psy7039 370 GEEFTITVPFSGRPKPTPIWTVNGDEVSPD-GRIKFETS--EN--QTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKV 444 (516)
Q Consensus 370 g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~-~~~~~~~~--~~--~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l 444 (516)
|+.+.|.|.+.|.|++.+.|.+++..+..+ .++.+... +. .+.|.|.++.. .|.|.|+|.|.|..|.....+.|
T Consensus 1 g~~~~l~C~~~g~p~~~i~W~k~~~~i~~~~~r~~~~~~~~~~~~~s~L~I~~~~~-~D~G~YtC~A~N~~G~~~~~~~L 79 (88)
T cd05735 1 GQKKEMSCTAHGEKPIIVRWEKEDRIINPEMSRYLVSTKEVGDEVISTLQILPTVR-EDSGFFSCHAINSYGEDRGIIQL 79 (88)
T ss_pred CCeEEEEEEEECCCCCEEEEeeCCEECCCCCCcEEEEEecCCCcEEEEEEECCCCc-ccCEEEEEEEEcCCCcceEEEEE
Confidence 788999999999999999999999887543 45655432 12 26799999999 99999999999999999999999
Q ss_pred EEecCCCCC
Q psy7039 445 YVVDKPSPP 453 (516)
Q Consensus 445 ~v~~~p~~P 453 (516)
.|..+|.+|
T Consensus 80 ~V~~~P~~P 88 (88)
T cd05735 80 TVQEPPDPP 88 (88)
T ss_pred EEeCCCCCC
Confidence 999998876
|
Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion. |
| >cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein | Back alignment and domain information |
|---|
Probab=99.39 E-value=5.1e-12 Score=98.72 Aligned_cols=85 Identities=21% Similarity=0.365 Sum_probs=73.6
Q ss_pred ccccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEEEEc-CCeEEEEEcCceecCCceEEEEEEEcCCCcee
Q psy7039 361 SIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETS-ENQTIYRNKSAKRATDSGSYTIQLVNTVGSDS 439 (516)
Q Consensus 361 ~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~-~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s 439 (516)
.+..+.+.+|+.+.|.|.+.|.|.|.+.|++++..+....++.+... +...+|.|.++.. .|+|.|+|.|.|..|...
T Consensus 7 lp~~v~v~~G~~v~L~C~v~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~-~D~G~Y~C~a~N~~G~~~ 85 (92)
T cd05737 7 LPDVVTIMEGKTLNLTCTVFGDPDPEVSWLKNDQALALSDHYNVKVEQGKYASLTIKGVSS-EDSGKYGIVVKNKYGGET 85 (92)
T ss_pred CCceEEEeCCCcEEEEEEEEecCCCeEEEEECCEECccCCCEEEEEcCCCEEEEEEccCCh-hhCEEEEEEEEECCCcce
Confidence 45667899999999999999999999999999998877777766544 3456899999999 999999999999999988
Q ss_pred EEEEEEE
Q psy7039 440 ASCKVYV 446 (516)
Q Consensus 440 ~s~~l~v 446 (516)
..+.|.|
T Consensus 86 ~~~~v~v 92 (92)
T cd05737 86 VDVTVSV 92 (92)
T ss_pred EEEEEeC
Confidence 8877754
|
Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity. |
| >cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins | Back alignment and domain information |
|---|
Probab=99.38 E-value=7.5e-12 Score=97.81 Aligned_cols=88 Identities=23% Similarity=0.365 Sum_probs=77.3
Q ss_pred CCccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEeec
Q psy7039 113 APRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTT 192 (516)
Q Consensus 113 ~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~ 192 (516)
+|.|. ..+..+.+.+|+.+.|.|.+. |.|.+.+.|++++..+....++.+...
T Consensus 3 ~~~~~-~~p~~~~~~~G~~~~L~C~~~--------------------------g~P~p~v~W~k~g~~l~~~~~~~~~~~ 55 (92)
T cd05747 3 PATIL-TKPRSLTVSEGESARFSCDVD--------------------------GEPAPTVTWMREGQIIVSSQRHQITST 55 (92)
T ss_pred CCccc-ccCccEEEeCCCcEEEEEEEe--------------------------ecCCCEEEEEECCEECCCCCcEEEEEc
Confidence 56666 667889999999999999999 999999999999998877777777766
Q ss_pred CCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEE
Q psy7039 193 KSETVLDIPFCSRSDTGHYSLTLENNLGTATASAH 227 (516)
Q Consensus 193 ~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~ 227 (516)
...+.|.|.+++.+|+|.|.|.+.|..|.......
T Consensus 56 ~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~ 90 (92)
T cd05747 56 EYKSTFEISKVQMSDEGNYTVVVENSEGKQEAQFT 90 (92)
T ss_pred CCeeEEEECCCCcccCEeEEEEEEcCCCCEeEEEE
Confidence 66789999999999999999999999998776543
|
Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. |
| >cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C) | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.4e-11 Score=94.52 Aligned_cols=80 Identities=29% Similarity=0.407 Sum_probs=70.4
Q ss_pred ceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccC-CceEEeecCCeeEEEec
Q psy7039 123 DVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIG-GRADVQTTKSETVLDIP 201 (516)
Q Consensus 123 ~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~-~~~~~~~~~~~~~l~i~ 201 (516)
.+.+.+|+.+.|.|.+. |.|.|.+.|++++.++... .++.+......+.|.|.
T Consensus 4 ~~~v~~G~~v~l~c~~~--------------------------G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~L~I~ 57 (86)
T cd05894 4 TIVVVAGNKLRLDVPIS--------------------------GEPAPTVTWSRGDKAFTETEGRVRVESYKDLSSFVIE 57 (86)
T ss_pred EEEEEcCCEEEEEeeEe--------------------------ecCCCeEEEEECCEECccCCCeEEEEEcCCeEEEEEC
Confidence 47789999999999999 9999999999999988753 46777666677899999
Q ss_pred cCCCCCCeeEEEEEEcCCCceEEEEEe
Q psy7039 202 FCSRSDTGHYSLTLENNLGTATASAHV 228 (516)
Q Consensus 202 ~~~~~d~g~Y~c~~~~~~g~~~~~~~~ 228 (516)
++.++|+|.|+|.+.|..|.......+
T Consensus 58 ~~~~~D~G~Y~c~a~N~~G~~~~~~~l 84 (86)
T cd05894 58 GAEREDEGVYTITVTNPVGEDHASLFV 84 (86)
T ss_pred CCccCcCEEEEEEEEeCCCcEEEEEEE
Confidence 999999999999999999998776654
|
Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain. |
| >cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.1e-11 Score=97.84 Aligned_cols=85 Identities=20% Similarity=0.295 Sum_probs=71.1
Q ss_pred cccEEEEcCCeEEEEEEEee-ecCCceEEEECCeecCCCCceEEEEcC-----CeEEEEEcCceecCCceEEEEEEEcCC
Q psy7039 362 IRDMTVLAGEEFTITVPFSG-RPKPTPIWTVNGDEVSPDGRIKFETSE-----NQTIYRNKSAKRATDSGSYTIQLVNTV 435 (516)
Q Consensus 362 ~~~~~v~~g~~~~l~C~~~g-~p~~~i~W~~~~~~l~~~~~~~~~~~~-----~~~~l~i~~~~~~~~~g~y~c~a~n~~ 435 (516)
...+.+..|+.+.|.|.+.| .|+|.+.|+|+|..+............ ..+.|.|..+.. +|+|.|+|.|.|..
T Consensus 10 ~~~~~v~~G~~v~L~c~v~g~~P~p~v~W~Kdg~~i~~~~~~~~~~~~~~~~~~~~~L~i~~v~~-~D~G~Ytc~A~N~~ 88 (101)
T cd04975 10 NTTIFVNLGENLNLVVEVEAYPPPPHINWTYDNRTLTNKLTEIVTSENESEYRYVSELKLVRLKE-SEAGTYTFLASNSD 88 (101)
T ss_pred CceEEEECCCCEEEEEEEEecCCCCccEEEeCCeeCCCCcceeEEEeccCcceEEEEEEEeecCH-hhCeeEEEEEECCC
Confidence 35678999999999999999 899999999999988755443332221 247899999999 99999999999999
Q ss_pred CceeEEEEEEEe
Q psy7039 436 GSDSASCKVYVV 447 (516)
Q Consensus 436 G~~s~s~~l~v~ 447 (516)
|..+.++.|.|.
T Consensus 89 G~~~~t~~L~V~ 100 (101)
T cd04975 89 ASKSLTFELYVN 100 (101)
T ss_pred ccEEEEEEEEEE
Confidence 999998888874
|
Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes |
| >PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds | Back alignment and domain information |
|---|
Probab=99.34 E-value=9.4e-12 Score=97.00 Aligned_cols=88 Identities=26% Similarity=0.419 Sum_probs=78.8
Q ss_pred CccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEeecC
Q psy7039 114 PRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTTK 193 (516)
Q Consensus 114 p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~ 193 (516)
|.|. ..+..+.+.+|+.+.|.|.+. +.|.+.+.|++++..+....++.+...+
T Consensus 1 P~~~-~~~~~~~v~~G~~~~l~c~~~--------------------------~~p~~~v~W~~~~~~l~~~~~~~~~~~~ 53 (90)
T PF07679_consen 1 PVFT-KKPKDVTVKEGESVTLECEVS--------------------------GNPPPTVTWYKNGRPLTSSQRYQIESDG 53 (90)
T ss_dssp EEEE-EESSEEEEETTSEEEEEEEEE--------------------------ESSSSEEEEEETTEEEESSSSEEEEEET
T ss_pred CEEE-EecCCEEEeCCCEEEEEEEEE--------------------------eCCCCcccccccccceeeeeeeeeeccc
Confidence 3444 566789999999999999999 8899999999999999999999998888
Q ss_pred CeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEEe
Q psy7039 194 SETVLDIPFCSRSDTGHYSLTLENNLGTATASAHV 228 (516)
Q Consensus 194 ~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~ 228 (516)
...+|.|.+++.+|+|.|+|.+.|..|.......+
T Consensus 54 ~~~~L~I~~v~~~D~G~Y~C~~~n~~g~~~~~~~l 88 (90)
T PF07679_consen 54 GSSSLTIKNVTREDAGTYTCVASNSSGEATASVNL 88 (90)
T ss_dssp TEEEEEESSESGGGSEEEEEEEEETTEEEEEEEEE
T ss_pred ceeEEccCCCChhhCEEEEEEEEECCCEEEEEEEE
Confidence 99999999999999999999999998887776544
|
There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A .... |
| >cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin | Back alignment and domain information |
|---|
Probab=99.34 E-value=8.2e-12 Score=92.79 Aligned_cols=73 Identities=23% Similarity=0.412 Sum_probs=61.8
Q ss_pred EEEEEEEeeecCCceEEEECCeecCC-CCceEEEEcC-CeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEEEE
Q psy7039 373 FTITVPFSGRPKPTPIWTVNGDEVSP-DGRIKFETSE-NQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYV 446 (516)
Q Consensus 373 ~~l~C~~~g~p~~~i~W~~~~~~l~~-~~~~~~~~~~-~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~v 446 (516)
+.|.|.+.|.|.|.|.|++++..+.. +.++.+.... +..+|.|.++.. .|+|.|+|.|.|..|..+.++.|.|
T Consensus 1 v~l~C~v~G~P~P~i~W~k~~~~i~~~~~r~~~~~~~~g~~~L~I~~~~~-~D~G~Y~C~A~N~~G~~~~~a~L~V 75 (75)
T cd05892 1 VKLECQISAIPPPKIFWKRNNEMVQYNTDRISLYQDNSGRVTLLIKNVNK-KDAGWYTVSAVNEAGVATCHARLDV 75 (75)
T ss_pred CEEEEEEEecCCCeEEEEECCEECcCCCCeEEEEEcCCCcEEEEECCCCh-hhCEEEEEEEEcCcCeEEEEEEEeC
Confidence 46899999999999999999998864 3566665433 335899999999 9999999999999999998888865
|
Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders. |
| >cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.4e-11 Score=96.29 Aligned_cols=84 Identities=23% Similarity=0.370 Sum_probs=71.8
Q ss_pred CcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEeec-CCeeE
Q psy7039 119 STLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTT-KSETV 197 (516)
Q Consensus 119 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~-~~~~~ 197 (516)
..+..+.+.+|+.+.|.|.+. |.|.+.+.|++++..+....++.+... +...+
T Consensus 6 ~lp~~v~v~~G~~v~L~C~v~--------------------------G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~ 59 (92)
T cd05737 6 GLPDVVTIMEGKTLNLTCTVF--------------------------GDPDPEVSWLKNDQALALSDHYNVKVEQGKYAS 59 (92)
T ss_pred cCCceEEEeCCCcEEEEEEEE--------------------------ecCCCeEEEEECCEECccCCCEEEEEcCCCEEE
Confidence 344567899999999999999 999999999999999987777776644 44578
Q ss_pred EEeccCCCCCCeeEEEEEEcCCCceEEEEEe
Q psy7039 198 LDIPFCSRSDTGHYSLTLENNLGTATASAHV 228 (516)
Q Consensus 198 l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~ 228 (516)
|.|.+++.+|+|.|+|.+.|..|.......+
T Consensus 60 L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~v 90 (92)
T cd05737 60 LTIKGVSSEDSGKYGIVVKNKYGGETVDVTV 90 (92)
T ss_pred EEEccCChhhCEEEEEEEEECCCcceEEEEE
Confidence 9999999999999999999999988766544
|
Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity. |
| >cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.5e-11 Score=91.86 Aligned_cols=73 Identities=41% Similarity=0.697 Sum_probs=65.9
Q ss_pred EEEEEEEeeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEEEE
Q psy7039 373 FTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYV 446 (516)
Q Consensus 373 ~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~v 446 (516)
+.|.|.+.|.|.|.+.|++++..+..+.++.+......+.|.|.++.. .|+|.|+|.|.|..|..+.++.|.|
T Consensus 2 ~~l~c~~~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~-~D~G~Y~C~a~N~~G~~~~~~~l~V 74 (74)
T cd05748 2 VRLEVPISGRPTPTVTWSKDGKPLKLSGRVQIETTASSTSLVIKNAER-SDSGKYTLTLKNPAGEKSATINVKV 74 (74)
T ss_pred EEEEeeEeeeCCCeEEEEECCEEcCCCCeEEEEECCCeEEEEECCCCc-CcCEEEEEEEECCCccEEEEEEEEC
Confidence 679999999999999999999998777777777777788999999999 9999999999999999888887764
|
Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN- |
| >cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.3e-11 Score=94.99 Aligned_cols=83 Identities=24% Similarity=0.470 Sum_probs=74.0
Q ss_pred ccccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeE
Q psy7039 361 SIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSA 440 (516)
Q Consensus 361 ~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~ 440 (516)
.+.+..+..|+.+.|.|.+.|.|.|.+.|++++..+..+.++.+........|.|.++.. .|.|.|.|.|.|..|....
T Consensus 9 ~p~~~~~~~G~~~~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~-~D~G~Y~C~a~N~~G~~~~ 87 (92)
T cd05747 9 KPRSLTVSEGESARFSCDVDGEPAPTVTWMREGQIIVSSQRHQITSTEYKSTFEISKVQM-SDEGNYTVVVENSEGKQEA 87 (92)
T ss_pred cCccEEEeCCCcEEEEEEEeecCCCEEEEEECCEECCCCCcEEEEEcCCeeEEEECCCCc-ccCEeEEEEEEcCCCCEeE
Confidence 356788999999999999999999999999999988777777777666678999999999 9999999999999999887
Q ss_pred EEEE
Q psy7039 441 SCKV 444 (516)
Q Consensus 441 s~~l 444 (516)
++.|
T Consensus 88 ~~~l 91 (92)
T cd05747 88 QFTL 91 (92)
T ss_pred EEEe
Confidence 7765
|
Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. |
| >cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.7e-11 Score=94.23 Aligned_cols=84 Identities=23% Similarity=0.235 Sum_probs=70.3
Q ss_pred cccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEE
Q psy7039 362 IRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSAS 441 (516)
Q Consensus 362 ~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s 441 (516)
+.+..+..|+.+.|.|.+.|.|.|.+.|++++..+................|.|.++.. .|.|.|.|.|.|..|....+
T Consensus 7 p~~~~v~~G~~v~l~C~~~G~P~p~v~W~~~g~~~~~~~~~~~~~~~~~~~L~I~~v~~-~D~g~Y~C~A~N~~G~~~~~ 85 (90)
T cd04972 7 PNATVVYEGGTATIRCTAEGSPLPKVEWIIAGLIVIQTRTDTLETTVDIYNLQLSNITS-ETQTTVTCTAENPVGQANVS 85 (90)
T ss_pred CcCEEEcCCCcEEEEEEEEEcCCCeEEEEECCEEccCCccEEEEecCCEEEEEEecCCc-ccCEEEEEEEECCCCceeEE
Confidence 34566899999999999999999999999999887654443333444567899999999 99999999999999998888
Q ss_pred EEEEE
Q psy7039 442 CKVYV 446 (516)
Q Consensus 442 ~~l~v 446 (516)
+.|.|
T Consensus 86 ~~L~v 90 (90)
T cd04972 86 VQVTV 90 (90)
T ss_pred EEEeC
Confidence 87764
|
TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo |
| >cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.2e-11 Score=92.17 Aligned_cols=74 Identities=28% Similarity=0.424 Sum_probs=63.2
Q ss_pred cCCeEEEEEEEeeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEEEE
Q psy7039 369 AGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYV 446 (516)
Q Consensus 369 ~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~v 446 (516)
+|+.+.|.|.+.|.|.|.+.|++++..+..+.++.+. ....|.|.++.. .|.|.|+|.|.|..|....++.|.|
T Consensus 1 eG~~v~l~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~---~~~~L~I~~v~~-~D~G~Y~C~A~N~~G~~~~~~~L~V 74 (74)
T cd05745 1 EGQTVDFLCEAQGYPQPVIAWTKGGSQLSVDRRHLVL---SSGTLRISRVAL-HDQGQYECQAVNIVGSQRTVAQLTV 74 (74)
T ss_pred CCCeEEEEeECCEecCCEEEEEECCEECCCCCCeEEc---cCCeEEEeeCCH-HhCEEEEEEEEeCCCceeEEEEEeC
Confidence 5889999999999999999999999888665554432 224799999999 9999999999999999988888764
|
Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self. |
| >PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds | Back alignment and domain information |
|---|
Probab=99.30 E-value=3.5e-11 Score=93.74 Aligned_cols=85 Identities=32% Similarity=0.513 Sum_probs=78.8
Q ss_pred ccccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeE
Q psy7039 361 SIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSA 440 (516)
Q Consensus 361 ~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~ 440 (516)
.+.++.+..|+.+.|.|.+.+.|.+.+.|++++..+..+.++.+........|.|.++.. .|.|.|+|.|.|..|....
T Consensus 6 ~~~~~~v~~G~~~~l~c~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~I~~v~~-~D~G~Y~C~~~n~~g~~~~ 84 (90)
T PF07679_consen 6 KPKDVTVKEGESVTLECEVSGNPPPTVTWYKNGRPLTSSQRYQIESDGGSSSLTIKNVTR-EDAGTYTCVASNSSGEATA 84 (90)
T ss_dssp ESSEEEEETTSEEEEEEEEEESSSSEEEEEETTEEEESSSSEEEEEETTEEEEEESSESG-GGSEEEEEEEEETTEEEEE
T ss_pred ecCCEEEeCCCEEEEEEEEEeCCCCcccccccccceeeeeeeeeecccceeEEccCCCCh-hhCEEEEEEEEECCCEEEE
Confidence 357789999999999999999999999999999999888899998888999999999999 9999999999999999988
Q ss_pred EEEEEE
Q psy7039 441 SCKVYV 446 (516)
Q Consensus 441 s~~l~v 446 (516)
++.|.|
T Consensus 85 ~~~l~V 90 (90)
T PF07679_consen 85 SVNLTV 90 (90)
T ss_dssp EEEEEE
T ss_pred EEEEEC
Confidence 888875
|
There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A .... |
| >cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1 | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.7e-11 Score=90.80 Aligned_cols=73 Identities=22% Similarity=0.291 Sum_probs=63.4
Q ss_pred CCeEEEEEEEeeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEEEE
Q psy7039 370 GEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYV 446 (516)
Q Consensus 370 g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~v 446 (516)
|+.+.|.|.+.|.|.|.+.|++++..+..+.++.+.. ..+|.|.++.. .|.|.|.|.|.|..|....++.|+|
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~k~~~~l~~~~r~~~~~---~g~L~I~~v~~-~D~G~Y~C~A~N~~G~~~~~~~l~~ 73 (73)
T cd05852 1 GGRVIIECKPKAAPKPKFSWSKGTELLVNNSRISIWD---DGSLEILNITK-LDEGSYTCFAENNRGKANSTGVLSV 73 (73)
T ss_pred CCeEEEEEecceeCCCEEEEEeCCEecccCCCEEEcC---CCEEEECcCCh-hHCEEEEEEEECCCCceeEEEEEEC
Confidence 6789999999999999999999998876666766542 23699999999 9999999999999999998888864
|
Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. |
| >cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1 | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.9e-11 Score=94.43 Aligned_cols=85 Identities=21% Similarity=0.254 Sum_probs=69.3
Q ss_pred CCccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEeec
Q psy7039 113 APRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTT 192 (516)
Q Consensus 113 ~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~ 192 (516)
+|.|. ..+.+..+.+|+.+.|.|.+. |.|.+.++|++++..+....++..
T Consensus 1 ~p~i~-~~~~~~~~~~G~~v~l~C~~~--------------------------G~P~P~v~W~k~~~~~~~~~~~~~--- 50 (88)
T cd05851 1 PADIN-VKFKDTYALKGQNVTLECFAL--------------------------GNPVPVIRWRKILEPMPATAEISM--- 50 (88)
T ss_pred CCceE-EccccEEEeCCCcEEEEEEec--------------------------ccCCCEEEEEECCcCCCCCCEEec---
Confidence 35555 566678899999999999999 999999999999887755433322
Q ss_pred CCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEEe
Q psy7039 193 KSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHV 228 (516)
Q Consensus 193 ~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~ 228 (516)
....|.|.+++.+|+|.|.|.+.|..|.......+
T Consensus 51 -~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l 85 (88)
T cd05851 51 -SGAVLKIFNIQPEDEGTYECEAENIKGKDKHQARV 85 (88)
T ss_pred -CCCEEEECcCChhhCEEEEEEEEcCCCceEEEEEE
Confidence 23589999999999999999999999988766544
|
Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. |
| >cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha | Back alignment and domain information |
|---|
Probab=99.30 E-value=3.3e-11 Score=95.29 Aligned_cols=84 Identities=17% Similarity=0.100 Sum_probs=70.0
Q ss_pred ccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEEEE------cCCeEEEEEcCceecCCceEEEEEEEcCCC
Q psy7039 363 RDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFET------SENQTIYRNKSAKRATDSGSYTIQLVNTVG 436 (516)
Q Consensus 363 ~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~------~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G 436 (516)
....+..|+.+.|.|.+.|.|+|.+.|++++..+..+.+..... ....+.|.|.++.. +|+|.|+|.|.|..|
T Consensus 11 ~~~~~~~~~~~~l~~~v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~-~D~G~Ytc~A~N~~g 89 (101)
T cd05859 11 QLEFANLHEVKEFVVEVEAYPPPQIRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKE-EDSGLYTALAQNEDA 89 (101)
T ss_pred ceEEEecCCcEEEEEEEEEeCCCceEEEECCEECcCCcceEEeccccccceeeccEEEEeeCCH-HHCEEEEEEEEcCCc
Confidence 35678899999999999999999999999999987554433221 12236899999999 999999999999999
Q ss_pred ceeEEEEEEEe
Q psy7039 437 SDSASCKVYVV 447 (516)
Q Consensus 437 ~~s~s~~l~v~ 447 (516)
..+.++.|.|.
T Consensus 90 ~~~~t~~l~V~ 100 (101)
T cd05859 90 VKSYTFALQIQ 100 (101)
T ss_pred eEEEEEEEEEE
Confidence 99988888874
|
IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development. |
| >cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) | Back alignment and domain information |
|---|
Probab=99.29 E-value=4.9e-11 Score=93.88 Aligned_cols=84 Identities=23% Similarity=0.370 Sum_probs=70.8
Q ss_pred cccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCC-CceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeE
Q psy7039 362 IRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPD-GRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSA 440 (516)
Q Consensus 362 ~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~-~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~ 440 (516)
..+..+..|+.+.|.|.+.|.|.|.+.|++++..+... .++.. ....+.|.|.++.. .|.|.|+|.|.|..|....
T Consensus 10 ~~~~~~~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~--~~~~~~L~I~~v~~-~D~G~Y~C~a~N~~G~~~~ 86 (95)
T cd05730 10 EVNATANLGQSVTLACDADGFPEPTMTWTKDGEPIESGEEKYSF--NEDGSEMTILDVDK-LDEAEYTCIAENKAGEQEA 86 (95)
T ss_pred ccceEEeCCCCEEEEEeccEeCCCEEEEEECCEECcCCCCEEEE--eCCCCEEEECCCCh-hhCEEEEEEEEcCCCeEEE
Confidence 44567899999999999999999999999999887654 33332 33445799999999 9999999999999999999
Q ss_pred EEEEEEec
Q psy7039 441 SCKVYVVD 448 (516)
Q Consensus 441 s~~l~v~~ 448 (516)
++.|.|..
T Consensus 87 ~~~L~V~~ 94 (95)
T cd05730 87 EIHLKVFA 94 (95)
T ss_pred EEEEEEEe
Confidence 99888864
|
Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the |
| >cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin | Back alignment and domain information |
|---|
Probab=99.28 E-value=3.1e-11 Score=89.84 Aligned_cols=73 Identities=21% Similarity=0.401 Sum_probs=61.1
Q ss_pred EEEEEEEeeecCCceEEEECCeecCC-CCceEEEEcC-CeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEEEE
Q psy7039 373 FTITVPFSGRPKPTPIWTVNGDEVSP-DGRIKFETSE-NQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYV 446 (516)
Q Consensus 373 ~~l~C~~~g~p~~~i~W~~~~~~l~~-~~~~~~~~~~-~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~v 446 (516)
+.|.|.+.|.|.|.+.|++++..+.. ..++.+.... +...|.|.++.. +|+|.|+|.|.|..|..+.++.|.|
T Consensus 1 v~l~C~v~G~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~~~L~I~~v~~-~D~G~Y~C~A~N~~G~~~~~a~L~V 75 (75)
T cd05893 1 VRLECRVSGVPHPQIFWKKENESLTHNTDRVSMHQDNCGYICLLIQGATK-EDAGWYTVSAKNEAGIVSCTARLDV 75 (75)
T ss_pred CEEEEEEeEecCCEEEEEECCEECCCCCCeEEEEEcCCCEEEEEECCCCH-HHCEEEEEEEEcCCCEEEEEEEEeC
Confidence 46899999999999999999988864 3456654443 334799999999 9999999999999999998888765
|
Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions. |
| >cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1 | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.7e-11 Score=93.53 Aligned_cols=82 Identities=22% Similarity=0.380 Sum_probs=68.8
Q ss_pred ccccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeE
Q psy7039 361 SIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSA 440 (516)
Q Consensus 361 ~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~ 440 (516)
.+.+..+..|+.+.|.|.+.|.|.|.+.|++++..+....++. . ....|.|.++.. +|.|.|+|.|.|..|....
T Consensus 7 ~~~~~~~~~G~~v~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~--~--~~~~L~I~~v~~-~D~G~Y~C~A~N~~G~~~~ 81 (88)
T cd05851 7 KFKDTYALKGQNVTLECFALGNPVPVIRWRKILEPMPATAEIS--M--SGAVLKIFNIQP-EDEGTYECEAENIKGKDKH 81 (88)
T ss_pred ccccEEEeCCCcEEEEEEecccCCCEEEEEECCcCCCCCCEEe--c--CCCEEEECcCCh-hhCEEEEEEEEcCCCceEE
Confidence 4566788999999999999999999999999988765443322 2 234799999999 9999999999999999988
Q ss_pred EEEEEEe
Q psy7039 441 SCKVYVV 447 (516)
Q Consensus 441 s~~l~v~ 447 (516)
++.|.|.
T Consensus 82 ~~~l~V~ 88 (88)
T cd05851 82 QARVYVQ 88 (88)
T ss_pred EEEEEEC
Confidence 8888763
|
Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. |
| >cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2) | Back alignment and domain information |
|---|
Probab=99.26 E-value=8.7e-11 Score=91.56 Aligned_cols=85 Identities=22% Similarity=0.416 Sum_probs=72.5
Q ss_pred ccccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEEEEcC-CeEEEEEcCceecCCceEEEEEEEcCCCcee
Q psy7039 361 SIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSE-NQTIYRNKSAKRATDSGSYTIQLVNTVGSDS 439 (516)
Q Consensus 361 ~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~-~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s 439 (516)
.+..+.+.+|+.+.|.|.+.|.|.|.+.|++++..+..+.++...... ...+|.|.++.. .|.|.|+|.|.|..|...
T Consensus 7 ~p~~v~v~eG~~v~L~C~v~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~-~D~G~Y~C~a~N~~G~~~ 85 (92)
T cd05891 7 LPDVVTIMEGKTLNLTCTVFGNPDPEVIWFKNDQDIELSEHYSVKLEQGKYASLTIKGVTS-EDSGKYSINVKNKYGGET 85 (92)
T ss_pred CCCcEEEcCCCEEEEEEEEEEeCCCeEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCCh-hhCEEEEEEEEeCCCcee
Confidence 456788999999999999999999999999999988766666554433 345799999999 999999999999999998
Q ss_pred EEEEEEE
Q psy7039 440 ASCKVYV 446 (516)
Q Consensus 440 ~s~~l~v 446 (516)
.++.|.|
T Consensus 86 ~~~~v~~ 92 (92)
T cd05891 86 VDVTVSV 92 (92)
T ss_pred eEEEEEC
Confidence 8877764
|
Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers. |
| >cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2 | Back alignment and domain information |
|---|
Probab=99.26 E-value=6.4e-11 Score=89.32 Aligned_cols=76 Identities=24% Similarity=0.354 Sum_probs=65.0
Q ss_pred CCeEEEEEEEeeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEEEE
Q psy7039 370 GEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYV 446 (516)
Q Consensus 370 g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~v 446 (516)
|+.+.|.|.+.|.|.|.+.|++++..+....++.+....+...|.|.++.. .|.|.|+|.|.|..|.....+.+.+
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~-~D~G~Y~C~a~N~~G~~~~~~~~~~ 76 (78)
T cd05743 1 GETVEFTCVATGVPTPIINWRLNWGHVPDSARVSITSEGGYGTLTIRDVKE-SDQGAYTCEAINTRGMVFGIPDGIL 76 (78)
T ss_pred CCEEEEEEEEEEecCCEEEEEECCeECCCCCCEEEEECCCEEEEEECCCCh-HHCEEEEEEEEecCCEEEecccEEE
Confidence 678999999999999999999998887766777776666677899999999 9999999999999998766554443
|
Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities. |
| >cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins | Back alignment and domain information |
|---|
Probab=99.24 E-value=6.2e-11 Score=90.98 Aligned_cols=81 Identities=28% Similarity=0.386 Sum_probs=69.8
Q ss_pred ccccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeE
Q psy7039 361 SIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSA 440 (516)
Q Consensus 361 ~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~ 440 (516)
.+.+..+..|+.+.|.|.+.|.|.|.+.|++++..+....++... . ..|.|.++.. .|.|.|+|.|.|..|....
T Consensus 5 ~p~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~--~--~~L~i~~~~~-~D~G~Y~C~a~N~~G~~~~ 79 (85)
T cd05728 5 VISDTEADIGSSLRWECKASGNPRPAYRWLKNGQPLASENRIEVE--A--GDLRITKLSL-SDSGMYQCVAENKHGTIYA 79 (85)
T ss_pred cCCccEEcCCCcEEEEEEeeEeCCCEEEEEECCEECCCCCeEEEe--C--CEEEEeeCCH-HHCEEEEEEEECCCCeEEE
Confidence 456788999999999999999999999999999988766555543 2 3699999999 9999999999999999888
Q ss_pred EEEEEE
Q psy7039 441 SCKVYV 446 (516)
Q Consensus 441 s~~l~v 446 (516)
++.|.|
T Consensus 80 ~~~l~V 85 (85)
T cd05728 80 SAELAV 85 (85)
T ss_pred EEEEEC
Confidence 887764
|
Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes. |
| >cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.5e-10 Score=89.98 Aligned_cols=84 Identities=19% Similarity=0.225 Sum_probs=69.0
Q ss_pred CcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEeecCCeeEE
Q psy7039 119 STLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTTKSETVL 198 (516)
Q Consensus 119 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l 198 (516)
.++....+.+|+.+.|.|.+. |.|.|.+.|++++..+................|
T Consensus 5 ~~p~~~~v~~G~~v~l~C~~~--------------------------G~P~p~v~W~~~g~~~~~~~~~~~~~~~~~~~L 58 (90)
T cd04972 5 DGPNATVVYEGGTATIRCTAE--------------------------GSPLPKVEWIIAGLIVIQTRTDTLETTVDIYNL 58 (90)
T ss_pred cCCcCEEEcCCCcEEEEEEEE--------------------------EcCCCeEEEEECCEEccCCccEEEEecCCEEEE
Confidence 445567799999999999999 999999999999988765444333334556799
Q ss_pred EeccCCCCCCeeEEEEEEcCCCceEEEEEe
Q psy7039 199 DIPFCSRSDTGHYSLTLENNLGTATASAHV 228 (516)
Q Consensus 199 ~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~ 228 (516)
.|.++..+|.|.|.|.+.|..|.......+
T Consensus 59 ~I~~v~~~D~g~Y~C~A~N~~G~~~~~~~L 88 (90)
T cd04972 59 QLSNITSETQTTVTCTAENPVGQANVSVQV 88 (90)
T ss_pred EEecCCcccCEEEEEEEECCCCceeEEEEE
Confidence 999999999999999999999987766543
|
TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo |
| >cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin | Back alignment and domain information |
|---|
Probab=99.23 E-value=9.1e-11 Score=87.56 Aligned_cols=73 Identities=23% Similarity=0.378 Sum_probs=61.0
Q ss_pred EEEEEEEeeecCCceEEEECCeecCC-CCceEEEEc-CCeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEEEE
Q psy7039 373 FTITVPFSGRPKPTPIWTVNGDEVSP-DGRIKFETS-ENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYV 446 (516)
Q Consensus 373 ~~l~C~~~g~p~~~i~W~~~~~~l~~-~~~~~~~~~-~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~v 446 (516)
+.|.|.+.|.|.|.+.|++++..+.. ..++.+... .+...|.|.++.. .|+|.|+|.|.|..|..+.++.|.|
T Consensus 1 v~L~C~v~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~~L~I~~~~~-~D~G~Y~C~a~N~~G~~~~~~~l~v 75 (75)
T cd05744 1 VRLECRVSAIPPPQIFWKKNNEMLTYNTDRISLYQDNCGRICLLIQNANK-EDAGWYTVSAVNEAGVVSCNARLDV 75 (75)
T ss_pred CEEEEEEeecCCCeEEEEECCEECCCCCCcEEEEEcCCCeEEEEECCCCc-ccCEEEEEEEEcCCCcEEEEEEEeC
Confidence 36899999999999999999998864 345655443 3445799999999 9999999999999999888887764
|
Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP). |
| >cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins | Back alignment and domain information |
|---|
Probab=99.23 E-value=8.4e-11 Score=92.83 Aligned_cols=82 Identities=12% Similarity=0.190 Sum_probs=67.1
Q ss_pred ccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecC-cCceeeEEeeCCeeeccCCceEEeec-----CC
Q psy7039 121 LNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLS-EPFLNHGWSINGQVCQIGGRADVQTT-----KS 194 (516)
Q Consensus 121 ~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~p~~~i~W~~~~~~~~~~~~~~~~~~-----~~ 194 (516)
...+.+.+|+++.|.|.+. | .|.+.+.|++++.++....+..+... ..
T Consensus 10 ~~~~~v~~G~~v~L~c~v~--------------------------g~~P~p~v~W~Kdg~~i~~~~~~~~~~~~~~~~~~ 63 (101)
T cd04975 10 NTTIFVNLGENLNLVVEVE--------------------------AYPPPPHINWTYDNRTLTNKLTEIVTSENESEYRY 63 (101)
T ss_pred CceEEEECCCCEEEEEEEE--------------------------ecCCCCccEEEeCCeeCCCCcceeEEEeccCcceE
Confidence 3567889999999999999 9 89999999999999875544333322 13
Q ss_pred eeEEEeccCCCCCCeeEEEEEEcCCCceEEEEEe
Q psy7039 195 ETVLDIPFCSRSDTGHYSLTLENNLGTATASAHV 228 (516)
Q Consensus 195 ~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~ 228 (516)
.+.|.|..+.++|+|.|+|.|.|..|.......+
T Consensus 64 ~~~L~i~~v~~~D~G~Ytc~A~N~~G~~~~t~~L 97 (101)
T cd04975 64 VSELKLVRLKESEAGTYTFLASNSDASKSLTFEL 97 (101)
T ss_pred EEEEEEeecCHhhCeeEEEEEECCCccEEEEEEE
Confidence 5789999999999999999999999987765544
|
Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes |
| >cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.7e-10 Score=89.34 Aligned_cols=84 Identities=19% Similarity=0.313 Sum_probs=69.7
Q ss_pred ccccEEEEcCCeEEEEEEEeeecCCceEEEE-CCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCce-
Q psy7039 361 SIRDMTVLAGEEFTITVPFSGRPKPTPIWTV-NGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSD- 438 (516)
Q Consensus 361 ~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~-~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~- 438 (516)
.+.+..+..|+.+.|.|.+.|.|. .+.|++ ++..+..+.++.+...+....|.|.++.. .|+|.|+|.|.|..|..
T Consensus 6 ~~~~~~v~~G~~v~l~C~~~G~P~-~v~W~k~~g~~~~~~~r~~~~~~g~~~~L~I~~v~~-~D~G~Y~C~A~N~~G~~~ 83 (92)
T cd05866 6 SLSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIVSSQRVVVQKEGVRSRLTIYNANI-EDAGIYRCQATDAKGQTQ 83 (92)
T ss_pred EecceEEcCCCeEEEEEEEEEeCC-eEEEEeCCCeEecCCCCEEEEeCCCeeEEEEecCCh-HHCEEEEEEEEcCCCcEE
Confidence 356678999999999999999998 899998 46666666777777666677899999999 99999999999999985
Q ss_pred eEEEEEEE
Q psy7039 439 SASCKVYV 446 (516)
Q Consensus 439 s~s~~l~v 446 (516)
..+..|.+
T Consensus 84 ~~~i~l~~ 91 (92)
T cd05866 84 EATVVLEI 91 (92)
T ss_pred EEEEEEEE
Confidence 55555544
|
Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule. |
| >cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.3e-10 Score=85.86 Aligned_cols=71 Identities=27% Similarity=0.440 Sum_probs=59.7
Q ss_pred eEEEEEEEeeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEEEE
Q psy7039 372 EFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYV 446 (516)
Q Consensus 372 ~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~v 446 (516)
++.|.|.+.|.|.|.+.|++++..+....++.+... ..|.|.++.. .|.|.|+|.|.|..|....++.|.|
T Consensus 1 ~v~l~C~~~G~P~p~v~W~k~g~~~~~~~~~~~~~~---~~l~i~~v~~-~D~G~Y~C~A~N~~G~~~~~~~L~V 71 (71)
T cd05723 1 DVIFECEVTGKPTPTVKWVKNGDMVIPSDYFKIVKE---HNLQVLGLVK-SDEGFYQCIAENDVGNVQASAQLII 71 (71)
T ss_pred CEEEEEEEEEeCCCEEEEEECCeECCCCCCEEEEec---CCEEEEcCCc-ccCEEEEEEEEcCCCEEEEEEEEEC
Confidence 368999999999999999999988866666655432 2477889999 9999999999999999988888764
|
Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain. |
| >cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.4e-10 Score=86.60 Aligned_cols=63 Identities=38% Similarity=0.600 Sum_probs=56.2
Q ss_pred CcCceeeEEeeCCeeeccCCceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEEe
Q psy7039 166 SEPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHV 228 (516)
Q Consensus 166 ~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~ 228 (516)
|.|.|.+.|++++..+....++.+......+.|.|.++..+|+|.|+|.+.|..|.......+
T Consensus 10 G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l 72 (74)
T cd05748 10 GRPTPTVTWSKDGKPLKLSGRVQIETTASSTSLVIKNAERSDSGKYTLTLKNPAGEKSATINV 72 (74)
T ss_pred eeCCCeEEEEECCEEcCCCCeEEEEECCCeEEEEECCCCcCcCEEEEEEEECCCccEEEEEEE
Confidence 999999999999999877777777777778899999999999999999999999988776544
|
Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN- |
| >cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.2e-10 Score=91.16 Aligned_cols=84 Identities=21% Similarity=0.333 Sum_probs=67.5
Q ss_pred cccEEEEcCCeEEEEEEEeeecC-CceEEEE-CCeecCC-CCceEEEEc-CCeEEEEEcCceecCCceEEEEEEEcCC-C
Q psy7039 362 IRDMTVLAGEEFTITVPFSGRPK-PTPIWTV-NGDEVSP-DGRIKFETS-ENQTIYRNKSAKRATDSGSYTIQLVNTV-G 436 (516)
Q Consensus 362 ~~~~~v~~g~~~~l~C~~~g~p~-~~i~W~~-~~~~l~~-~~~~~~~~~-~~~~~l~i~~~~~~~~~g~y~c~a~n~~-G 436 (516)
+....+..|+.+.|.|.+.|.|. |.+.|++ ++..+.. +.++.+... ...+.|.|.++.. .|+|.|+|.|.|.. |
T Consensus 7 p~~~~v~~G~~v~l~C~v~G~P~~p~i~W~~~~g~~l~~~~~r~~v~~~~~~~~~L~I~~v~~-~D~G~YtC~A~N~~~g 85 (96)
T cd05865 7 PSQGEISVGESKFFLCQVAGEAKDKDISWFSPNGEKLTPNQQRISVVRNDDYSSTLTIYNANI-DDAGIYKCVVSNEDEG 85 (96)
T ss_pred CCccEECCCCeEEEEEEEeCCCCCCEEEEECCCCcCccccCCeEEEEeCCCCceEEEEeccCh-hhCEEEEEEEEcCCCC
Confidence 45567899999999999999995 6999998 6766544 345544332 3347899999999 99999999999997 8
Q ss_pred ceeEEEEEEE
Q psy7039 437 SDSASCKVYV 446 (516)
Q Consensus 437 ~~s~s~~l~v 446 (516)
....++.|.|
T Consensus 86 ~~~~s~~l~v 95 (96)
T cd05865 86 ESEATVNVKI 95 (96)
T ss_pred cEEEEEEEEE
Confidence 8888888776
|
Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans |
| >cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2 | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.5e-10 Score=88.66 Aligned_cols=79 Identities=27% Similarity=0.344 Sum_probs=64.2
Q ss_pred CeEEEEEEEeeecCC--ceEEEECCeecCCC---CceE-EEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEE
Q psy7039 371 EEFTITVPFSGRPKP--TPIWTVNGDEVSPD---GRIK-FETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKV 444 (516)
Q Consensus 371 ~~~~l~C~~~g~p~~--~i~W~~~~~~l~~~---~~~~-~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l 444 (516)
+++.|.|.+.|.|.| .+.|++++..+... .++. +......+.|+|.++.. .|+|.|+|.|.|..|..+.++.|
T Consensus 1 ~~~~L~C~a~g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~-~D~G~YtC~A~n~~g~~~~~~~L 79 (85)
T cd05854 1 ENLTLQCHASHDPTMDLTFTWSLDDFPIDLDKPNGHYRRMEVKETIGDLVIVNAQL-SHAGTYTCTAQTVVDSASASATL 79 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEccccCCCCcEEEEEecceEeEEEEccCCh-hhCeEEEEEEecCCCCEEEEEEE
Confidence 468899999999987 58999999877532 2332 22223456899999999 99999999999999999999999
Q ss_pred EEecCC
Q psy7039 445 YVVDKP 450 (516)
Q Consensus 445 ~v~~~p 450 (516)
.|..+|
T Consensus 80 ~V~~~P 85 (85)
T cd05854 80 VVRGPP 85 (85)
T ss_pred EEECCC
Confidence 998754
|
Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c |
| >cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin | Back alignment and domain information |
|---|
Probab=99.21 E-value=7.4e-11 Score=87.98 Aligned_cols=72 Identities=24% Similarity=0.315 Sum_probs=61.0
Q ss_pred cCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEeecCCeeEEEeccCCCCC
Q psy7039 128 AGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFCSRSD 207 (516)
Q Consensus 128 ~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d 207 (516)
+|+.+.|.|.+. |.|.|.+.|++++..+....+..+. ...+|.|.+++.+|
T Consensus 1 eG~~v~l~C~~~--------------------------g~P~p~i~W~k~g~~~~~~~~~~~~---~~~~L~I~~v~~~D 51 (74)
T cd05745 1 EGQTVDFLCEAQ--------------------------GYPQPVIAWTKGGSQLSVDRRHLVL---SSGTLRISRVALHD 51 (74)
T ss_pred CCCeEEEEeECC--------------------------EecCCEEEEEECCEECCCCCCeEEc---cCCeEEEeeCCHHh
Confidence 589999999999 9999999999999988765554443 23589999999999
Q ss_pred CeeEEEEEEcCCCceEEEEEe
Q psy7039 208 TGHYSLTLENNLGTATASAHV 228 (516)
Q Consensus 208 ~g~Y~c~~~~~~g~~~~~~~~ 228 (516)
+|.|+|.+.|..|.......+
T Consensus 52 ~G~Y~C~A~N~~G~~~~~~~L 72 (74)
T cd05745 52 QGQYECQAVNIVGSQRTVAQL 72 (74)
T ss_pred CEEEEEEEEeCCCceeEEEEE
Confidence 999999999999988776544
|
Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self. |
| >cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM) | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.2e-10 Score=92.03 Aligned_cols=84 Identities=25% Similarity=0.468 Sum_probs=68.1
Q ss_pred cccEEEEcCCeEEEEEEEeeecCCceEEEEC--CeecC-----CCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcC
Q psy7039 362 IRDMTVLAGEEFTITVPFSGRPKPTPIWTVN--GDEVS-----PDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNT 434 (516)
Q Consensus 362 ~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~--~~~l~-----~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~ 434 (516)
+.+..+.+|+.+.|.|.+.|.|.|.+.|++. +..+. .+.++.+........|.|.++.. .|+|.|.|.|.|.
T Consensus 8 ~~~~~~~~G~~v~l~C~~~G~P~p~i~W~k~~~g~~~~~~~~~~~~r~~v~~~~~~~~L~I~~v~~-~D~G~Y~C~A~N~ 86 (98)
T cd05870 8 LKNETTVENGAATLSCKAEGEPIPEITWKRASDGHTFSEGDKSPDGRIEVKGQHGESSLHIKDVKL-SDSGRYDCEAASR 86 (98)
T ss_pred eccEEEcCCCcEEEEEecccCCCCeEEEEECCCCceeccCCcCcCceEEEeecCCeeEEEEeeCCc-CCCEEEEEEEecc
Confidence 4678899999999999999999999999984 33332 12355555444557899999999 9999999999999
Q ss_pred CCceeEEEEEEE
Q psy7039 435 VGSDSASCKVYV 446 (516)
Q Consensus 435 ~G~~s~s~~l~v 446 (516)
.|....++.|.|
T Consensus 87 ~G~~~~~~~l~~ 98 (98)
T cd05870 87 IGGHQKSMYLDI 98 (98)
T ss_pred CCcceeEEEEeC
Confidence 999888877754
|
Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule. |
| >cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2) | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.9e-10 Score=89.68 Aligned_cols=84 Identities=23% Similarity=0.333 Sum_probs=70.4
Q ss_pred cccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEeec-CCeeEE
Q psy7039 120 TLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTT-KSETVL 198 (516)
Q Consensus 120 ~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~-~~~~~l 198 (516)
.+..+.+.+|+.+.|.|.+. +.|.+.+.|++++..+....++.+... +...+|
T Consensus 7 ~p~~v~v~eG~~v~L~C~v~--------------------------g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~~L 60 (92)
T cd05891 7 LPDVVTIMEGKTLNLTCTVF--------------------------GNPDPEVIWFKNDQDIELSEHYSVKLEQGKYASL 60 (92)
T ss_pred CCCcEEEcCCCEEEEEEEEE--------------------------EeCCCeEEEEECCEECCCCCCEEEEEcCCCEEEE
Confidence 34568899999999999999 899999999999998877666655433 334589
Q ss_pred EeccCCCCCCeeEEEEEEcCCCceEEEEEee
Q psy7039 199 DIPFCSRSDTGHYSLTLENNLGTATASAHVT 229 (516)
Q Consensus 199 ~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~~ 229 (516)
.|.+++.+|+|.|+|.+.|..|.....+.+.
T Consensus 61 ~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~v~ 91 (92)
T cd05891 61 TIKGVTSEDSGKYSINVKNKYGGETVDVTVS 91 (92)
T ss_pred EECCCChhhCEEEEEEEEeCCCceeeEEEEE
Confidence 9999999999999999999999988776543
|
Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers. |
| >cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule) | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.2e-10 Score=87.17 Aligned_cols=74 Identities=23% Similarity=0.253 Sum_probs=60.6
Q ss_pred CCeEEEEEEEeeecCCceEEEECCeecCCCCc-eEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEEEE
Q psy7039 370 GEEFTITVPFSGRPKPTPIWTVNGDEVSPDGR-IKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYV 446 (516)
Q Consensus 370 g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~-~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~v 446 (516)
|+.+.|.|.+.|.|.|.|.|++++..+..... ...... ...|.|.++.. .|.|.|.|.|.|..|....++.|.|
T Consensus 1 g~~~~l~C~a~G~P~P~i~W~k~g~~i~~~~~~~~~~~~--~~~l~i~~v~~-~D~G~Y~C~A~N~~G~~~~~~~l~v 75 (76)
T cd05868 1 GEDGTLICRANGNPKPSISWLTNGVPIEIAPTDPSRKVD--GDTIIFSKVQE-RSSAVYQCNASNEYGYLLANAFVNV 75 (76)
T ss_pred CCCEEEEEEeeEeCCCeEEEEECCEEccccCCCceEEec--CCEEEECCCCH-hhCEEEEEEEEcCCCEEEEEEEEEe
Confidence 67889999999999999999999988753321 111222 23688999999 9999999999999999999988877
|
Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system. |
| >cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related) | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.1e-10 Score=87.64 Aligned_cols=75 Identities=21% Similarity=0.227 Sum_probs=62.1
Q ss_pred CCeEEEEEEEeeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEEEE
Q psy7039 370 GEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYV 446 (516)
Q Consensus 370 g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~v 446 (516)
|+.+.|.|.+.|.|.|.+.|++++..+....... ........|.|.++.. .|.|.|+|.|.|..|....++.|.|
T Consensus 1 G~~~~l~C~~~g~P~p~i~W~~~g~~~~~~~~~~-~~~~~~~~L~i~~v~~-~D~G~Y~C~A~N~~G~~~~~~~l~V 75 (76)
T cd04978 1 GETGRLDCEAEGIPQPTITWRLNGVPIEELPPDP-RRRVDGGTLILSNVQP-NDTAVYQCNASNVHGYLLANAFVHV 75 (76)
T ss_pred CCeEEEEEEceeeCCCEEEEEECCEECCCCCCcc-eEEccCCEEEECCCCh-hhCEEEEEEEEccCCeEEEeEEEEE
Confidence 6789999999999999999999998875443221 1222345799999999 9999999999999999988888876
|
Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. |
| >cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1 | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.2e-10 Score=86.29 Aligned_cols=71 Identities=23% Similarity=0.338 Sum_probs=61.2
Q ss_pred CCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEeecCCeeEEEeccCCCCCC
Q psy7039 129 GQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDT 208 (516)
Q Consensus 129 g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~ 208 (516)
|+.+.|.|.+. |.|.+.+.|++++..+....++.+.. ..+|.|.+++.+|+
T Consensus 1 G~~~~l~C~~~--------------------------g~P~p~v~W~k~~~~l~~~~r~~~~~---~g~L~I~~v~~~D~ 51 (73)
T cd05852 1 GGRVIIECKPK--------------------------AAPKPKFSWSKGTELLVNNSRISIWD---DGSLEILNITKLDE 51 (73)
T ss_pred CCeEEEEEecc--------------------------eeCCCEEEEEeCCEecccCCCEEEcC---CCEEEECcCChhHC
Confidence 67899999999 99999999999998887777776643 34799999999999
Q ss_pred eeEEEEEEcCCCceEEEEEe
Q psy7039 209 GHYSLTLENNLGTATASAHV 228 (516)
Q Consensus 209 g~Y~c~~~~~~g~~~~~~~~ 228 (516)
|.|+|.+.|..|....+..+
T Consensus 52 G~Y~C~A~N~~G~~~~~~~l 71 (73)
T cd05852 52 GSYTCFAENNRGKANSTGVL 71 (73)
T ss_pred EEEEEEEECCCCceeEEEEE
Confidence 99999999999988776544
|
Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. |
| >cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.8e-10 Score=86.35 Aligned_cols=74 Identities=20% Similarity=0.327 Sum_probs=60.5
Q ss_pred CCeEEEEEEEeeecCCceEEEECCeecCCCCce-EEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEEEE
Q psy7039 370 GEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRI-KFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYV 446 (516)
Q Consensus 370 g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~-~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~v 446 (516)
|+.+.|.|.+.|.|.|.+.|++++..+...... .... ....|.|.++.. .|+|.|.|.|.|..|.....+.|.|
T Consensus 1 G~~v~l~C~~~G~P~p~i~W~k~g~~i~~~~~~~~~~~--~~~~L~I~~~~~-~D~G~Y~C~a~N~~G~~~~~~~l~V 75 (76)
T cd05867 1 GETARLDCQVEGIPTPNITWSINGAPIEGTDPDPRRHV--SSGALILTDVQP-SDTAVYQCEARNRHGNLLANAHVHV 75 (76)
T ss_pred CCeEEEEEEeeEeCCCeEEEEECCEECCCCCCCceEEe--eCCEEEECCCCh-hhCEEEEEEEECCCCeEEEEEEEEE
Confidence 678999999999999999999999887543211 1112 224699999999 9999999999999999888888876
|
Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM. |
| >cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.6e-10 Score=88.85 Aligned_cols=81 Identities=27% Similarity=0.409 Sum_probs=66.4
Q ss_pred EEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceE-EEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEEEE
Q psy7039 365 MTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIK-FETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCK 443 (516)
Q Consensus 365 ~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~-~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~ 443 (516)
..+..|+.+.|.|.+.|.|.|.+.|++++..+..+.+.. .........|.|.++.. .|+|.|+|.|.|..|....++.
T Consensus 4 ~~v~~G~~~~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~l~i~~~~~-~D~G~Y~C~a~N~~G~~~~~~~ 82 (85)
T cd05857 4 HAVPAANTVKFRCPAAGNPTPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVP-SDKGNYTCVVENEYGSINHTYH 82 (85)
T ss_pred EEcCCCCEEEEEEEcCCCCCCEEEEEECCEECCCCCceeeeEEeCCceEEEEccCCc-ccCEEEEEEEEeCCCEEEEEEE
Confidence 457889999999999999999999999999886544321 12223445799999999 9999999999999999888887
Q ss_pred EEE
Q psy7039 444 VYV 446 (516)
Q Consensus 444 l~v 446 (516)
|.|
T Consensus 83 l~v 85 (85)
T cd05857 83 LDV 85 (85)
T ss_pred EEC
Confidence 764
|
Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans. |
| >cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.9e-10 Score=90.72 Aligned_cols=84 Identities=26% Similarity=0.387 Sum_probs=68.9
Q ss_pred cccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCC-----CceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCC
Q psy7039 362 IRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPD-----GRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVG 436 (516)
Q Consensus 362 ~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~-----~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G 436 (516)
+.+..+.+|+.+.|.|.+.|.|.|.+.|++++..+... .++.+........|.|.++.. .|.|.|.|.|.|..|
T Consensus 8 ~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~-~D~G~Y~C~a~N~~G 86 (96)
T cd05732 8 LENQTAVELEQITLTCEAEGDPIPEITWRRATRNFSEGDKSLDGRIVVRGHARVSSLTLKDVQL-TDAGRYDCEASNRIG 86 (96)
T ss_pred cCceeEecCCcEEEEEEEeEcCCCcEEEEECCcccCCCCccccceEEEeCCccEEEEEECcCCc-CcCEEeEEEEEeCCC
Confidence 45678899999999999999999999999988655432 234444344557899999999 999999999999999
Q ss_pred ceeEEEEEEE
Q psy7039 437 SDSASCKVYV 446 (516)
Q Consensus 437 ~~s~s~~l~v 446 (516)
....++.|.|
T Consensus 87 ~~~~s~~l~v 96 (96)
T cd05732 87 GDQQSMYLEV 96 (96)
T ss_pred CcEEEEEEeC
Confidence 9988887764
|
Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole |
| >cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.4e-10 Score=86.09 Aligned_cols=63 Identities=24% Similarity=0.339 Sum_probs=52.2
Q ss_pred CcCceeeEEeeCCeeecc-CCceEEeec-CCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEEe
Q psy7039 166 SEPFLNHGWSINGQVCQI-GGRADVQTT-KSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHV 228 (516)
Q Consensus 166 ~~p~~~i~W~~~~~~~~~-~~~~~~~~~-~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~ 228 (516)
|.|.|.+.|++++..+.. ..++.+... .+..+|.|.+++.+|+|.|+|.+.|..|.......+
T Consensus 9 G~P~P~i~W~k~~~~i~~~~~r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~a~L 73 (75)
T cd05892 9 AIPPPKIFWKRNNEMVQYNTDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVNEAGVATCHARL 73 (75)
T ss_pred ecCCCeEEEEECCEECcCCCCeEEEEEcCCCcEEEEECCCChhhCEEEEEEEEcCcCeEEEEEEE
Confidence 999999999999998874 356666543 334589999999999999999999999988776544
|
Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders. |
| >cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM) | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.9e-10 Score=90.97 Aligned_cols=88 Identities=23% Similarity=0.344 Sum_probs=69.2
Q ss_pred CCccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeC--Ceeecc-----CC
Q psy7039 113 APRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSIN--GQVCQI-----GG 185 (516)
Q Consensus 113 ~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~--~~~~~~-----~~ 185 (516)
+|.|. .+.++.+.+|+.+.|.|.+. |.|.+.+.|+++ +..+.. ..
T Consensus 2 ~p~i~--~~~~~~~~~G~~v~l~C~~~--------------------------G~P~p~i~W~k~~~g~~~~~~~~~~~~ 53 (98)
T cd05870 2 QPHII--QLKNETTVENGAATLSCKAE--------------------------GEPIPEITWKRASDGHTFSEGDKSPDG 53 (98)
T ss_pred CCEEE--eeccEEEcCCCcEEEEEecc--------------------------cCCCCeEEEEECCCCceeccCCcCcCc
Confidence 35553 35678899999999999999 999999999994 444432 24
Q ss_pred ceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEEe
Q psy7039 186 RADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHV 228 (516)
Q Consensus 186 ~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~ 228 (516)
|+.+........|.|.+++.+|+|.|+|.+.|..|....++.+
T Consensus 54 r~~v~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l 96 (98)
T cd05870 54 RIEVKGQHGESSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYL 96 (98)
T ss_pred eEEEeecCCeeEEEEeeCCcCCCEEEEEEEeccCCcceeEEEE
Confidence 5666544556789999999999999999999999987766543
|
Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule. |
| >cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.3e-10 Score=90.25 Aligned_cols=89 Identities=17% Similarity=0.329 Sum_probs=68.1
Q ss_pred CCccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccC-----Cce
Q psy7039 113 APRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIG-----GRA 187 (516)
Q Consensus 113 ~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~-----~~~ 187 (516)
+|.|. ..+....+..|+.+.|.|.+. |.|.|.++|++++..+... .++
T Consensus 2 ~p~i~-~~~~~~~~~~g~~v~l~C~~~--------------------------G~P~P~v~W~~~~~~~~~~~~~~~~~~ 54 (97)
T cd05869 2 KPKIT-YVENQTAMELEEQITLTCEAS--------------------------GDPIPSITWRTSTRNISSEEKTLDGHI 54 (97)
T ss_pred CceEE-EccCceEEEcCCCEEEEEEee--------------------------EeCCCEEEEEECCccccCCccccCccE
Confidence 35554 233445556689999999999 9999999999988766432 234
Q ss_pred EEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEEe
Q psy7039 188 DVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHV 228 (516)
Q Consensus 188 ~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~ 228 (516)
.+......+.|.|.+++.+|+|.|+|.+.|..|....+..+
T Consensus 55 ~v~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l 95 (97)
T cd05869 55 VVRSHARVSSLTLKYIQYTDAGEYLCTASNTIGQDSQSMYL 95 (97)
T ss_pred EEEcCccEEEEEEecCccCcCEEEEEEEecCCCCeeEEEEE
Confidence 44444455799999999999999999999999988776544
|
Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr |
| >cd04969 Ig5_Contactin_like Fifth Ig domain of contactin | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.4e-10 Score=86.25 Aligned_cols=73 Identities=22% Similarity=0.322 Sum_probs=63.0
Q ss_pred CCeEEEEEEEeeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEEEE
Q psy7039 370 GEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYV 446 (516)
Q Consensus 370 g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~v 446 (516)
|+.+.|.|.+.|.|.|.+.|++++..+....++.+.. ...|.|.++.. .|+|.|+|.|.|..|....++.|.|
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~---~~~L~i~~v~~-~D~G~Y~C~a~N~~G~~~~~~~l~V 73 (73)
T cd04969 1 GGDVIIECKPKAAPKPTISWSKGTELLTNSSRICIWP---DGSLEILNVTK-SDEGKYTCFAENFFGKANSTGSLSV 73 (73)
T ss_pred CCeEEEEEeeeEcCCCEEEEEECCEEcccCCCEEECC---CCeEEEccCCh-hHCEEEEEEEECCCCceEEEEEEEC
Confidence 6789999999999999999999999887666666432 23699999999 9999999999999999988888764
|
Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week |
| >cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.5e-10 Score=90.08 Aligned_cols=88 Identities=18% Similarity=0.289 Sum_probs=69.9
Q ss_pred CCccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccC-----Cce
Q psy7039 113 APRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIG-----GRA 187 (516)
Q Consensus 113 ~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~-----~~~ 187 (516)
+|.|. .+.+..+.+|+.+.|.|.+. |.|.+.+.|++++..+... .++
T Consensus 2 ~P~i~--~~~~~~~~~g~~v~l~C~~~--------------------------g~p~p~v~W~~~~~~~~~~~~~~~~~~ 53 (96)
T cd05732 2 QPKIT--YLENQTAVELEQITLTCEAE--------------------------GDPIPEITWRRATRNFSEGDKSLDGRI 53 (96)
T ss_pred Cccce--ecCceeEecCCcEEEEEEEe--------------------------EcCCCcEEEEECCcccCCCCccccceE
Confidence 45553 34567889999999999999 9999999999988655432 344
Q ss_pred EEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEEe
Q psy7039 188 DVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHV 228 (516)
Q Consensus 188 ~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~ 228 (516)
.+........|.|.+++.+|+|.|.|.+.|..|....++.+
T Consensus 54 ~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~l 94 (96)
T cd05732 54 VVRGHARVSSLTLKDVQLTDAGRYDCEASNRIGGDQQSMYL 94 (96)
T ss_pred EEeCCccEEEEEECcCCcCcCEEeEEEEEeCCCCcEEEEEE
Confidence 44444556799999999999999999999999988766543
|
Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole |
| >cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3) | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.2e-10 Score=84.01 Aligned_cols=65 Identities=20% Similarity=0.339 Sum_probs=54.8
Q ss_pred EEEEEEEeeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEEEE
Q psy7039 373 FTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYV 446 (516)
Q Consensus 373 ~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~v 446 (516)
+.|.|.+.|.|.|.+.|+++|..+... .....|.|.++.. +|+|.|+|.|.|..|..+.+..+.+
T Consensus 1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~--------~~~~~L~i~~v~~-~D~G~YtC~a~N~~g~~~~~~~~~l 65 (67)
T cd05863 1 VKLPVKVAAYPPPEFQWYKDGKLISGK--------HSQHSLQIKDVTE-ASAGTYTLVLWNSAAGLEKRISLEL 65 (67)
T ss_pred CEEEEEEEEeCCCEEEEEECCEECccc--------CCcCEEEECCCCH-HHCEEEEEEEEECCccEEEEEEEEE
Confidence 368999999999999999999887521 2345799999999 9999999999999998776666655
|
Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth. |
| >cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.6e-10 Score=89.73 Aligned_cols=81 Identities=19% Similarity=0.279 Sum_probs=66.3
Q ss_pred ccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccC-CceEEeecCCeeEEE
Q psy7039 121 LNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIG-GRADVQTTKSETVLD 199 (516)
Q Consensus 121 ~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~-~~~~~~~~~~~~~l~ 199 (516)
...+.+..|+.+.|.|.+. |.|.+.+.|++++..+... .++.. ....+.|.
T Consensus 10 ~~~~~~~~G~~v~L~C~~~--------------------------g~P~p~v~W~k~g~~~~~~~~~~~~--~~~~~~L~ 61 (95)
T cd05730 10 EVNATANLGQSVTLACDAD--------------------------GFPEPTMTWTKDGEPIESGEEKYSF--NEDGSEMT 61 (95)
T ss_pred ccceEEeCCCCEEEEEecc--------------------------EeCCCEEEEEECCEECcCCCCEEEE--eCCCCEEE
Confidence 3456789999999999999 9999999999999888654 33333 33446799
Q ss_pred eccCCCCCCeeEEEEEEcCCCceEEEEEee
Q psy7039 200 IPFCSRSDTGHYSLTLENNLGTATASAHVT 229 (516)
Q Consensus 200 i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~~ 229 (516)
|.+++.+|+|.|+|.+.|..|.......+.
T Consensus 62 I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~ 91 (95)
T cd05730 62 ILDVDKLDEAEYTCIAENKAGEQEAEIHLK 91 (95)
T ss_pred ECCCChhhCEEEEEEEEcCCCeEEEEEEEE
Confidence 999999999999999999999877665543
|
Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the |
| >cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) | Back alignment and domain information |
|---|
Probab=99.18 E-value=3.5e-10 Score=89.29 Aligned_cols=81 Identities=28% Similarity=0.415 Sum_probs=65.3
Q ss_pred EEEEcCCeEEEEEEEeeecCCceEEEECCeecCCC-----CceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCcee
Q psy7039 365 MTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPD-----GRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDS 439 (516)
Q Consensus 365 ~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~-----~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s 439 (516)
..+..|+.+.|.|.+.|.|.|.+.|++++..+... .++.+........|.|.++.. .|.|.|.|.|.|..|..+
T Consensus 12 ~~~~~g~~v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~I~~v~~-~D~G~Y~C~A~N~~G~~~ 90 (97)
T cd05869 12 TAMELEEQITLTCEASGDPIPSITWRTSTRNISSEEKTLDGHIVVRSHARVSSLTLKYIQY-TDAGEYLCTASNTIGQDS 90 (97)
T ss_pred eEEEcCCCEEEEEEeeEeCCCEEEEEECCccccCCccccCccEEEEcCccEEEEEEecCcc-CcCEEEEEEEecCCCCee
Confidence 34456899999999999999999999988765432 234443334456899999999 999999999999999999
Q ss_pred EEEEEEE
Q psy7039 440 ASCKVYV 446 (516)
Q Consensus 440 ~s~~l~v 446 (516)
.++.|.|
T Consensus 91 ~~~~l~v 97 (97)
T cd05869 91 QSMYLEV 97 (97)
T ss_pred EEEEEEC
Confidence 8888765
|
Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr |
| >cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2 | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.9e-10 Score=86.66 Aligned_cols=72 Identities=19% Similarity=0.236 Sum_probs=63.3
Q ss_pred CCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEeecCCeeEEEeccCCCCCC
Q psy7039 129 GQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDT 208 (516)
Q Consensus 129 g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~ 208 (516)
|+.+.|.|.+. |.|.|.+.|++++..+....++.+...+....|.|.+++.+|+
T Consensus 1 G~~v~l~C~~~--------------------------g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~ 54 (78)
T cd05743 1 GETVEFTCVAT--------------------------GVPTPIINWRLNWGHVPDSARVSITSEGGYGTLTIRDVKESDQ 54 (78)
T ss_pred CCEEEEEEEEE--------------------------EecCCEEEEEECCeECCCCCCEEEEECCCEEEEEECCCChHHC
Confidence 68899999999 9999999999999888777777777667778999999999999
Q ss_pred eeEEEEEEcCCCceEEEE
Q psy7039 209 GHYSLTLENNLGTATASA 226 (516)
Q Consensus 209 g~Y~c~~~~~~g~~~~~~ 226 (516)
|.|.|.+.|..|......
T Consensus 55 G~Y~C~a~N~~G~~~~~~ 72 (78)
T cd05743 55 GAYTCEAINTRGMVFGIP 72 (78)
T ss_pred EEEEEEEEecCCEEEecc
Confidence 999999999998776543
|
Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities. |
| >cd04968 Ig3_Contactin_like Third Ig domain of contactin | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.8e-10 Score=88.13 Aligned_cols=80 Identities=21% Similarity=0.387 Sum_probs=67.2
Q ss_pred cccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEE
Q psy7039 362 IRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSAS 441 (516)
Q Consensus 362 ~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s 441 (516)
+.+..+..|+.+.|.|.+.|.|.|.+.|++++..+....... .....|.|.++.. +|+|.|.|.|.|..|....+
T Consensus 8 p~~~~~~~g~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~----~~~~~L~i~~v~~-~D~G~Y~C~a~N~~G~~~~~ 82 (88)
T cd04968 8 PKDTYALKGQNVTLECFALGNPVPQIKWRKVDGSMPSSAEIS----MSGAVLKIPNIQF-EDEGTYECEAENIKGKDTHQ 82 (88)
T ss_pred CCceEEeCCCcEEEEEEeeEeCCCEEEEEECCCcCCCccEEE----EeCCEEEECCCCc-ccCEEEEEEEEECCCcEEEE
Confidence 456778999999999999999999999999887654433322 2335799999999 99999999999999999888
Q ss_pred EEEEE
Q psy7039 442 CKVYV 446 (516)
Q Consensus 442 ~~l~v 446 (516)
+.|.|
T Consensus 83 ~~l~V 87 (88)
T cd04968 83 GRIYV 87 (88)
T ss_pred EEEEE
Confidence 88876
|
Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week |
| >cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.2e-10 Score=88.85 Aligned_cols=82 Identities=21% Similarity=0.338 Sum_probs=66.3
Q ss_pred cccccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCc-e
Q psy7039 360 LSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGS-D 438 (516)
Q Consensus 360 ~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~-~ 438 (516)
....++.+.+|+.+.|.|.+.|. .|.+.|++++..+.. .++.+. .....|.|.++.. .|.|.|.|.|.|..|. .
T Consensus 8 ~~~~~~~v~~g~~v~l~C~a~g~-~p~i~W~kng~~l~~-~~~~~~--~~~~~L~I~~v~~-~D~G~Y~C~a~N~~G~~~ 82 (91)
T cd05740 8 NSVGNQPPEDNQPVTLTCEAEGQ-ATYIWWVNNGSLLVP-PRLQLS--NDNRTLTFNNVTR-SDTGHYQCEASNEVSNMT 82 (91)
T ss_pred cccCccccccCCcEEEEEEeCCC-CCEEEEEECCEECCC-CCEEEe--CCCCEEEECcCCh-hhCEEEEEEEEcCCCCEE
Confidence 34556789999999999999999 999999999987754 334333 3344799999999 9999999999999998 4
Q ss_pred eEEEEEEE
Q psy7039 439 SASCKVYV 446 (516)
Q Consensus 439 s~s~~l~v 446 (516)
+..+.|.|
T Consensus 83 S~~~~L~V 90 (91)
T cd05740 83 SDPYILNV 90 (91)
T ss_pred eeeEEEEe
Confidence 55666665
|
Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the |
| >cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC | Back alignment and domain information |
|---|
Probab=99.17 E-value=3e-10 Score=85.87 Aligned_cols=71 Identities=28% Similarity=0.438 Sum_probs=57.9
Q ss_pred EEEEEeeecCCceEEEECCeecCCCCceEEEEc-------CCeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEEEE
Q psy7039 375 ITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETS-------ENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYV 446 (516)
Q Consensus 375 l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~-------~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~v 446 (516)
+.|.+.|.|.|.+.|+++|..+..+........ ...+.|.|.++.. .|+|.|+|.|.|..|....+..+..
T Consensus 3 i~~~v~G~P~P~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~-~D~G~YtC~A~N~~G~~~~~~~~~~ 80 (81)
T cd04971 3 IPFTVRGNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTH-VNNGNYTLVASNEYGQDSKSISAHF 80 (81)
T ss_pred EEEEeEeeCCCcEEEEECCEECcCCCceeEEEEeecccccccEEEEEECCCCc-ccCeEEEEEEEeCCCCeeeEEEeee
Confidence 689999999999999999998876554332211 2345799999999 9999999999999999888776653
|
TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun |
| >cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.8e-10 Score=84.89 Aligned_cols=70 Identities=23% Similarity=0.359 Sum_probs=57.2
Q ss_pred EEEEEeeecCCceEEEECCeecCCCCceEEE-----EcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEEE
Q psy7039 375 ITVPFSGRPKPTPIWTVNGDEVSPDGRIKFE-----TSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVY 445 (516)
Q Consensus 375 l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~-----~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~ 445 (516)
|.|.+.|+|.|.|.|+++|..+..+.++... .......|.|.++.. .|+|.|+|.|.|..|....++.+.
T Consensus 3 i~~~v~G~P~Pti~W~kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~-~D~G~YtC~A~N~~G~~~~~~~~~ 77 (79)
T cd05855 3 IPFTVKGNPKPTLQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTH-LNNGIYTLVAKNEYGEDEKNVSAH 77 (79)
T ss_pred EEEEEeEeCCCceEEEECCEECCCCcceeeeeEeecccceEEEEEECCCCc-ccCEEEEEEEEcCCcccceEEEee
Confidence 6799999999999999999999766543221 112346899999999 999999999999999987776654
|
TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems. |
| >cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 | Back alignment and domain information |
|---|
Probab=99.16 E-value=3.9e-10 Score=88.24 Aligned_cols=82 Identities=23% Similarity=0.254 Sum_probs=64.3
Q ss_pred ccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCc-eeeEEee-CCeeecc-CCceEEee-cCCee
Q psy7039 121 LNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPF-LNHGWSI-NGQVCQI-GGRADVQT-TKSET 196 (516)
Q Consensus 121 ~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~i~W~~-~~~~~~~-~~~~~~~~-~~~~~ 196 (516)
+....+..|+.+.|.|.+. |.|. +.+.|++ ++..+.. ..++.+.. .+..+
T Consensus 7 p~~~~v~~G~~v~l~C~v~--------------------------G~P~~p~i~W~~~~g~~l~~~~~r~~v~~~~~~~~ 60 (96)
T cd05865 7 PSQGEISVGESKFFLCQVA--------------------------GEAKDKDISWFSPNGEKLTPNQQRISVVRNDDYSS 60 (96)
T ss_pred CCccEECCCCeEEEEEEEe--------------------------CCCCCCEEEEECCCCcCccccCCeEEEEeCCCCce
Confidence 3445688999999999999 9985 7999998 6766655 44555443 34467
Q ss_pred EEEeccCCCCCCeeEEEEEEcCC-CceEEEEEe
Q psy7039 197 VLDIPFCSRSDTGHYSLTLENNL-GTATASAHV 228 (516)
Q Consensus 197 ~l~i~~~~~~d~g~Y~c~~~~~~-g~~~~~~~~ 228 (516)
+|.|.+++.+|+|.|+|.|.|.. |...+++.+
T Consensus 61 ~L~I~~v~~~D~G~YtC~A~N~~~g~~~~s~~l 93 (96)
T cd05865 61 TLTIYNANIDDAGIYKCVVSNEDEGESEATVNV 93 (96)
T ss_pred EEEEeccChhhCEEEEEEEEcCCCCcEEEEEEE
Confidence 99999999999999999999986 777766543
|
Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans |
| >cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 | Back alignment and domain information |
|---|
Probab=99.15 E-value=3.5e-10 Score=87.62 Aligned_cols=77 Identities=23% Similarity=0.320 Sum_probs=65.8
Q ss_pred cccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEee-CCeeeccCCceEEeecCCeeEE
Q psy7039 120 TLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSI-NGQVCQIGGRADVQTTKSETVL 198 (516)
Q Consensus 120 ~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~-~~~~~~~~~~~~~~~~~~~~~l 198 (516)
.+.++.+.+|+.+.|.|.+. |.|. .+.|++ ++..+....++.+...+....|
T Consensus 6 ~~~~~~v~~G~~v~l~C~~~--------------------------G~P~-~v~W~k~~g~~~~~~~r~~~~~~g~~~~L 58 (92)
T cd05866 6 SLSKVELSVGESKFFTCTAI--------------------------GEPE-SIDWYNPQGEKIVSSQRVVVQKEGVRSRL 58 (92)
T ss_pred EecceEEcCCCeEEEEEEEE--------------------------EeCC-eEEEEeCCCeEecCCCCEEEEeCCCeeEE
Confidence 34567889999999999999 9888 899998 4667766677777666777899
Q ss_pred EeccCCCCCCeeEEEEEEcCCCceE
Q psy7039 199 DIPFCSRSDTGHYSLTLENNLGTAT 223 (516)
Q Consensus 199 ~i~~~~~~d~g~Y~c~~~~~~g~~~ 223 (516)
.|.++..+|+|.|+|.+.|..|...
T Consensus 59 ~I~~v~~~D~G~Y~C~A~N~~G~~~ 83 (92)
T cd05866 59 TIYNANIEDAGIYRCQATDAKGQTQ 83 (92)
T ss_pred EEecCChHHCEEEEEEEEcCCCcEE
Confidence 9999999999999999999998764
|
Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule. |
| >cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4 | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.7e-10 Score=86.31 Aligned_cols=79 Identities=16% Similarity=0.212 Sum_probs=63.4
Q ss_pred CeEEEEEEEee--ecCCceEEEECCeecCC---CCceEEEEc-CCeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEE
Q psy7039 371 EEFTITVPFSG--RPKPTPIWTVNGDEVSP---DGRIKFETS-ENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKV 444 (516)
Q Consensus 371 ~~~~l~C~~~g--~p~~~i~W~~~~~~l~~---~~~~~~~~~-~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l 444 (516)
+.+.|.|.+.+ .+++.|.|+++|..+.. +.+|..... .....|.|.++.. .|+|.|+|.|.|..+..+.++.|
T Consensus 1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~~~~~~~~~~~~~~~~~L~I~nv~~-~dsG~YtC~a~n~~~~~~a~a~L 79 (85)
T cd05853 1 ESIVLPCQVSHDHSLDIVFTWSFNGHLIDFQKDGDHFERVGGQDSAGDLMIRSIQL-KHAGKYVCMVQTSVDKLSAAADL 79 (85)
T ss_pred CcEEEEEEeccCCCCCcEEEEEECCEECcccCCCccEEEeccCCCCCcEEEecCCH-HHCEEEEEEEEcccCceEEEEEE
Confidence 35789999966 55779999999999852 234443211 2345799999999 99999999999999999999999
Q ss_pred EEecCC
Q psy7039 445 YVVDKP 450 (516)
Q Consensus 445 ~v~~~p 450 (516)
+|..+|
T Consensus 80 ~V~~pP 85 (85)
T cd05853 80 IVRGPP 85 (85)
T ss_pred EEecCC
Confidence 999765
|
Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16. |
| >cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin | Back alignment and domain information |
|---|
Probab=99.14 E-value=3.7e-10 Score=84.03 Aligned_cols=63 Identities=17% Similarity=0.314 Sum_probs=51.6
Q ss_pred CcCceeeEEeeCCeeeccC-CceEEeecC-CeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEEe
Q psy7039 166 SEPFLNHGWSINGQVCQIG-GRADVQTTK-SETVLDIPFCSRSDTGHYSLTLENNLGTATASAHV 228 (516)
Q Consensus 166 ~~p~~~i~W~~~~~~~~~~-~~~~~~~~~-~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~ 228 (516)
|.|.|.+.|++++..+... .++.+...+ +...|.|.++..+|+|.|+|.+.|..|....+..+
T Consensus 9 G~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L 73 (75)
T cd05893 9 GVPHPQIFWKKENESLTHNTDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKNEAGIVSCTARL 73 (75)
T ss_pred EecCCEEEEEECCEECCCCCCeEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEEEEE
Confidence 9999999999999888653 456665433 34579999999999999999999999998776543
|
Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions. |
| >cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.1e-10 Score=84.17 Aligned_cols=68 Identities=25% Similarity=0.443 Sum_probs=58.1
Q ss_pred EEEEEEEeeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEE
Q psy7039 373 FTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKV 444 (516)
Q Consensus 373 ~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l 444 (516)
+.|.|.+.|.|.|.+.|++++..+....++.+.. ...|.|.++.. .|.|.|.|.|.|..|..+.++.|
T Consensus 1 v~L~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~~---~~~L~I~~~~~-~D~G~Y~C~a~N~~G~~~~~~~L 68 (69)
T cd05746 1 VQIPCSAQGDPEPTITWNKDGVQVTESGKFHISP---EGYLAIRDVGV-ADQGRYECVARNTIGYASVSMVL 68 (69)
T ss_pred CEeEecceEeCCCEEEEEECCEECCCCCCEEECC---CCEEEECcCCh-hhCEEEEEEEECCCCcEEEEEEe
Confidence 4689999999999999999998887666665432 24799999999 99999999999999998887766
|
Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self. |
| >cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin | Back alignment and domain information |
|---|
Probab=99.14 E-value=5.5e-10 Score=89.91 Aligned_cols=82 Identities=18% Similarity=0.291 Sum_probs=66.9
Q ss_pred cCCeEEEEEEEeeecCCceEEEECCeecCC-CCceEEEEcC----CeEEEEEcCce-ecCCceEEEEEEEcCCCceeEEE
Q psy7039 369 AGEEFTITVPFSGRPKPTPIWTVNGDEVSP-DGRIKFETSE----NQTIYRNKSAK-RATDSGSYTIQLVNTVGSDSASC 442 (516)
Q Consensus 369 ~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~-~~~~~~~~~~----~~~~l~i~~~~-~~~~~g~y~c~a~n~~G~~s~s~ 442 (516)
.|..+.|.|.+.|.|.+.+.|++++..+.. +.++...... ..+.|+|.++. . .|.|.|.|.|.|..|....++
T Consensus 22 ~g~~v~L~C~a~G~P~p~i~W~k~g~~l~~~~~r~~~~~~~~~~~~~s~L~I~~v~~~-~D~G~Y~C~A~N~~G~~~~~i 100 (109)
T cd05773 22 GSSDANLVCQAQGVPRVQFRWAKNGVPLDLGNPRYEETTEHTGTVHTSILTIINVSAA-LDYALFTCTAHNSLGEDSLDI 100 (109)
T ss_pred CCCEEEEEEECcccCCCEEEEEECCEECCCCCCeEEEEeeccCccceeEEEECcCCcc-CCCEEEEEEEEeCCccCcEEE
Confidence 568899999999999999999999988753 3355433211 23679999987 6 899999999999999999999
Q ss_pred EEEEecCCC
Q psy7039 443 KVYVVDKPS 451 (516)
Q Consensus 443 ~l~v~~~p~ 451 (516)
.|.+..+|+
T Consensus 101 ~L~~~~~p~ 109 (109)
T cd05773 101 QLVSTSRPD 109 (109)
T ss_pred EEEecCCCC
Confidence 999987663
|
Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p |
| >cd04970 Ig6_Contactin_like Sixth Ig domain of contactin | Back alignment and domain information |
|---|
Probab=99.13 E-value=4.1e-10 Score=86.47 Aligned_cols=79 Identities=25% Similarity=0.307 Sum_probs=63.0
Q ss_pred CeEEEEEEEeeecCC--ceEEEECCeecCCCC---ceE-EEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEE
Q psy7039 371 EEFTITVPFSGRPKP--TPIWTVNGDEVSPDG---RIK-FETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKV 444 (516)
Q Consensus 371 ~~~~l~C~~~g~p~~--~i~W~~~~~~l~~~~---~~~-~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l 444 (516)
+.+.|.|.+.|.|.+ .+.|++++..+.... .+. .........|.|.++.. .|+|.|+|.|.|..|..+.++.|
T Consensus 1 e~~~L~C~~~g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~-~D~G~Y~C~a~n~~g~~~~~~~l 79 (85)
T cd04970 1 ESITLQCHASHDPTLDLTFTWSFNGVPIDFDKDGGHYRRVGGKDSNGDLMIRNAQL-KHAGKYTCTAQTVVDSLSASADL 79 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEeeccCCCccEEEEecccccceEEEccCCH-HhCeeeEEEEecCCCcEEEEEEE
Confidence 467899999999987 569999998875322 222 11223446899999999 99999999999999999999999
Q ss_pred EEecCC
Q psy7039 445 YVVDKP 450 (516)
Q Consensus 445 ~v~~~p 450 (516)
.|..+|
T Consensus 80 ~V~~pP 85 (85)
T cd04970 80 IVRGPP 85 (85)
T ss_pred EEECCC
Confidence 998764
|
Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week |
| >cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins | Back alignment and domain information |
|---|
Probab=99.13 E-value=4.9e-10 Score=85.97 Aligned_cols=80 Identities=31% Similarity=0.397 Sum_probs=67.9
Q ss_pred CcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEeecCCeeEE
Q psy7039 119 STLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTTKSETVL 198 (516)
Q Consensus 119 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l 198 (516)
..+.+..+..|+.+.|.|.+. |.|.+.+.|++++..+....++.+. ...|
T Consensus 4 ~~p~~~~~~~G~~~~l~C~~~--------------------------g~p~p~v~W~k~g~~~~~~~~~~~~----~~~L 53 (85)
T cd05728 4 KVISDTEADIGSSLRWECKAS--------------------------GNPRPAYRWLKNGQPLASENRIEVE----AGDL 53 (85)
T ss_pred ccCCccEEcCCCcEEEEEEee--------------------------EeCCCEEEEEECCEECCCCCeEEEe----CCEE
Confidence 455668899999999999999 9999999999999988766665542 3479
Q ss_pred EeccCCCCCCeeEEEEEEcCCCceEEEEEe
Q psy7039 199 DIPFCSRSDTGHYSLTLENNLGTATASAHV 228 (516)
Q Consensus 199 ~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~ 228 (516)
.|.++..+|+|.|+|.+.|..|....+..+
T Consensus 54 ~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l 83 (85)
T cd05728 54 RITKLSLSDSGMYQCVAENKHGTIYASAEL 83 (85)
T ss_pred EEeeCCHHHCEEEEEEEECCCCeEEEEEEE
Confidence 999999999999999999999987766544
|
Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes. |
| >cd04968 Ig3_Contactin_like Third Ig domain of contactin | Back alignment and domain information |
|---|
Probab=99.12 E-value=4.4e-10 Score=87.01 Aligned_cols=80 Identities=21% Similarity=0.268 Sum_probs=65.4
Q ss_pred CcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEeecCCeeEE
Q psy7039 119 STLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTTKSETVL 198 (516)
Q Consensus 119 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l 198 (516)
..+....+.+|+.+.|.|.+. |.|.+.++|++++..+....... .....|
T Consensus 6 ~~p~~~~~~~g~~v~l~C~~~--------------------------g~P~p~v~W~k~~~~~~~~~~~~----~~~~~L 55 (88)
T cd04968 6 VFPKDTYALKGQNVTLECFAL--------------------------GNPVPQIKWRKVDGSMPSSAEIS----MSGAVL 55 (88)
T ss_pred ECCCceEEeCCCcEEEEEEee--------------------------EeCCCEEEEEECCCcCCCccEEE----EeCCEE
Confidence 455678889999999999999 99999999999887665443322 234689
Q ss_pred EeccCCCCCCeeEEEEEEcCCCceEEEEEe
Q psy7039 199 DIPFCSRSDTGHYSLTLENNLGTATASAHV 228 (516)
Q Consensus 199 ~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~ 228 (516)
.|.+++.+|+|.|.|.+.|..|.......+
T Consensus 56 ~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l 85 (88)
T cd04968 56 KIPNIQFEDEGTYECEAENIKGKDTHQGRI 85 (88)
T ss_pred EECCCCcccCEEEEEEEEECCCcEEEEEEE
Confidence 999999999999999999999987766543
|
Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week |
| >cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2) | Back alignment and domain information |
|---|
Probab=99.12 E-value=3e-10 Score=83.08 Aligned_cols=67 Identities=22% Similarity=0.394 Sum_probs=55.3
Q ss_pred EEEEEEeeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEEEE
Q psy7039 374 TITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYV 446 (516)
Q Consensus 374 ~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~v 446 (516)
.|.|.+.|.|.|.+.|++++..+....++. ....|.|.++.. .|+|.|+|.|.|..|.......+++
T Consensus 2 ~~~c~v~G~P~P~v~W~k~g~~l~~~~~~~-----~~~~L~I~~v~~-~D~G~YtC~a~N~~G~~~~~~t~~l 68 (70)
T cd05864 2 KIPVKYYGYPPPEVKWYKNGQLIVLNHTFK-----RGVHLTIYEVTE-KDAGNYTVVLTNPITKEEQRHTFQL 68 (70)
T ss_pred EEEeEEEEeCCCEEEEEECCEECCCCCEEc-----cCCEEEECcCCH-HHCEEEEEEEEECCCceeeEEEEEE
Confidence 589999999999999999999886543321 224799999999 9999999999999998766665554
|
Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells. |
| >cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins | Back alignment and domain information |
|---|
Probab=99.11 E-value=5.3e-10 Score=83.86 Aligned_cols=73 Identities=22% Similarity=0.381 Sum_probs=61.2
Q ss_pred EEEEEEeeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEEEEe
Q psy7039 374 TITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVV 447 (516)
Q Consensus 374 ~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~v~ 447 (516)
.|.|.+.|.|.|.+.|++++..+..+....+........|.|.++.. .|.|.|+|.|.|..|....++.|.|.
T Consensus 2 ~L~C~v~g~P~p~v~W~k~~~~l~~~~~~~~~~~~~~~~l~I~~~~~-~D~G~Y~C~a~N~~G~~~~~~~l~V~ 74 (76)
T cd05736 2 SLRCHAEGIPLPRLTWLKNGMDITPKLSKQLTLIANGSELHISNVRY-EDTGAYTCIAKNEAGVDEDISSLFVE 74 (76)
T ss_pred EeEeEeeecCCCEEEEEECCEECCCCCCccEEEeCCCCEEEECcCCc-ccCEEEEEEEEcCCCCcceEEEEEEE
Confidence 58999999999999999999887654433333344455799999999 99999999999999999999998885
|
Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling. |
| >cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor | Back alignment and domain information |
|---|
Probab=99.11 E-value=9.2e-10 Score=84.60 Aligned_cols=79 Identities=20% Similarity=0.313 Sum_probs=64.2
Q ss_pred eEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCce-EEeecCCeeEEEecc
Q psy7039 124 VKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRA-DVQTTKSETVLDIPF 202 (516)
Q Consensus 124 ~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~-~~~~~~~~~~l~i~~ 202 (516)
..+.+|+.+.|.|.+. |.|.+.+.|++++..+....+. .+........|.|.+
T Consensus 4 ~~v~~G~~~~L~C~~~--------------------------g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~l~i~~ 57 (85)
T cd05857 4 HAVPAANTVKFRCPAA--------------------------GNPTPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMES 57 (85)
T ss_pred EEcCCCCEEEEEEEcC--------------------------CCCCCEEEEEECCEECCCCCceeeeEEeCCceEEEEcc
Confidence 4577899999999999 9999999999999988765443 122223456899999
Q ss_pred CCCCCCeeEEEEEEcCCCceEEEEEe
Q psy7039 203 CSRSDTGHYSLTLENNLGTATASAHV 228 (516)
Q Consensus 203 ~~~~d~g~Y~c~~~~~~g~~~~~~~~ 228 (516)
++.+|+|.|+|.+.|..|.......+
T Consensus 58 ~~~~D~G~Y~C~a~N~~G~~~~~~~l 83 (85)
T cd05857 58 VVPSDKGNYTCVVENEYGSINHTYHL 83 (85)
T ss_pred CCcccCEEEEEEEEeCCCEEEEEEEE
Confidence 99999999999999999988776543
|
Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans. |
| >cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) | Back alignment and domain information |
|---|
Probab=99.11 E-value=4.4e-10 Score=82.95 Aligned_cols=70 Identities=23% Similarity=0.336 Sum_probs=57.3
Q ss_pred EEEEEEEeeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEEEE
Q psy7039 373 FTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYV 446 (516)
Q Consensus 373 ~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~v 446 (516)
+.|.|.+.|.|.|.+.|++++..+..+. ... ......|.|.++.. .|.|.|+|.|.|..|....++.|.|
T Consensus 1 ~~L~C~~~G~P~P~v~W~k~~~~~~~~~-~~~--~~~~~~L~I~~v~~-~D~G~Y~C~a~N~~G~~~~~~~l~V 70 (71)
T cd05876 1 LVLECIAEGLPTPEVHWDRIDGPLSPNR-TKK--LNNNKTLQLDNVLE-SDDGEYVCTAENSEGSARHHYTVTV 70 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCcCCCCCc-eeE--EcCCCEEEEcccCH-HhCEEEEEEEEcCCCeEEEEEEEEE
Confidence 3689999999999999999987664332 222 22345899999999 9999999999999999888888876
|
Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM. |
| >cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4 | Back alignment and domain information |
|---|
Probab=99.10 E-value=5.7e-10 Score=83.79 Aligned_cols=72 Identities=24% Similarity=0.378 Sum_probs=56.4
Q ss_pred EEEEEEEeeecCCceEEEECCeecCCCC-ceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeE--EEEEEEe
Q psy7039 373 FTITVPFSGRPKPTPIWTVNGDEVSPDG-RIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSA--SCKVYVV 447 (516)
Q Consensus 373 ~~l~C~~~g~p~~~i~W~~~~~~l~~~~-~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~--s~~l~v~ 447 (516)
+.|.|.+.|.|.|.+.|+++|..+.... .+.+. .....|.|.++.. .|.|.|.|.|.|..|.... .+.|.|.
T Consensus 1 v~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~--~~~~~L~I~~~~~-~D~G~Y~C~a~N~~G~~~s~~~~~l~v~ 75 (77)
T cd05760 1 VTLRCHIDGHPRPTYQWFRDGTPLSDGQGNYSVS--SKERTLTLRSAGP-DDSGLYYCCAHNAFGSVCSSQNFTLSII 75 (77)
T ss_pred CEEEEEeeecCCCcEEEEECCEECCCCCccEEEe--CCCCEEEEeeCCc-ccCEEEEEEEEeCCCeEeeCceEEEEEe
Confidence 4689999999999999999999875443 33333 2334799999999 9999999999999998644 4555443
|
Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s |
| >cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR) | Back alignment and domain information |
|---|
Probab=99.10 E-value=4.7e-10 Score=82.68 Aligned_cols=69 Identities=23% Similarity=0.353 Sum_probs=57.1
Q ss_pred EEEEEEEeeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEEEE
Q psy7039 373 FTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYV 446 (516)
Q Consensus 373 ~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~v 446 (516)
+.|.|.+.|.|.|.+.|++++..+..+.++. .....|.|.++.. .|+|.|+|.|.|..|....+..+.+
T Consensus 1 ~~l~c~v~g~P~p~v~W~k~g~~l~~~~~~~----~~~~~L~I~~v~~-~D~G~YtC~a~N~~g~~~~~~~~~~ 69 (71)
T cd04976 1 VRLPVKVKAYPPPEIQWYKNGKLISEKNRTK----KSGHSLTIKDVTE-EDAGNYTVVLTNKQAKLEKRLTFTL 69 (71)
T ss_pred CEEEeEEEEeCCCEEEEEECCEECCCCCEEE----cCCCEEEECcCCH-HHCEEEEEEEEcCCccEEEEEEEEE
Confidence 3589999999999999999999886654332 2335799999999 9999999999999998777666655
|
Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa |
| >cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR) | Back alignment and domain information |
|---|
Probab=99.09 E-value=7.2e-10 Score=83.69 Aligned_cols=78 Identities=21% Similarity=0.309 Sum_probs=64.6
Q ss_pred ccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEEE
Q psy7039 363 RDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASC 442 (516)
Q Consensus 363 ~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~ 442 (516)
+...+..|+.+.|.|.+.+. .+.+.|+++|..+..+.++.+. + ..|.|.++.. .|+|.|+|.|.|..|.....+
T Consensus 2 ~~~~~~~G~~v~l~C~~~~~-~~~v~W~k~g~~l~~~~~~~~~--~--~~L~I~~~~~-~DsG~Y~C~a~n~~g~~~~~~ 75 (79)
T cd04973 2 ESYSAHPGDLLQLRCRLRDD-VQSINWTKDGVQLGENNRTRIT--G--EEVQIKDAVP-RDSGLYACVTSSPSGSDTTYF 75 (79)
T ss_pred CcEEecCCCCEEEEEEecCC-CceEEEeeCCcCCCCCceEEEe--C--CEEEECCCCh-hhCEEEEEEEeCCCCcccEEE
Confidence 34678899999999999986 5689999999988766666543 2 3699999999 999999999999999877766
Q ss_pred EEEE
Q psy7039 443 KVYV 446 (516)
Q Consensus 443 ~l~v 446 (516)
.|.|
T Consensus 76 ~v~V 79 (79)
T cd04973 76 SVNV 79 (79)
T ss_pred EEeC
Confidence 6654
|
Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs. |
| >cd04969 Ig5_Contactin_like Fifth Ig domain of contactin | Back alignment and domain information |
|---|
Probab=99.09 E-value=7.9e-10 Score=82.16 Aligned_cols=71 Identities=23% Similarity=0.345 Sum_probs=60.9
Q ss_pred CCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEeecCCeeEEEeccCCCCCC
Q psy7039 129 GQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDT 208 (516)
Q Consensus 129 g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~ 208 (516)
|+.+.|.|.+. |.|.+.++|++++..+....++.+.. ...|.|.+++.+|+
T Consensus 1 G~~v~L~C~~~--------------------------g~P~p~v~W~k~~~~~~~~~~~~~~~---~~~L~i~~v~~~D~ 51 (73)
T cd04969 1 GGDVIIECKPK--------------------------AAPKPTISWSKGTELLTNSSRICIWP---DGSLEILNVTKSDE 51 (73)
T ss_pred CCeEEEEEeee--------------------------EcCCCEEEEEECCEEcccCCCEEECC---CCeEEEccCChhHC
Confidence 67899999999 99999999999999887776766543 24799999999999
Q ss_pred eeEEEEEEcCCCceEEEEEe
Q psy7039 209 GHYSLTLENNLGTATASAHV 228 (516)
Q Consensus 209 g~Y~c~~~~~~g~~~~~~~~ 228 (516)
|.|+|.+.|..|.......+
T Consensus 52 G~Y~C~a~N~~G~~~~~~~l 71 (73)
T cd04969 52 GKYTCFAENFFGKANSTGSL 71 (73)
T ss_pred EEEEEEEECCCCceEEEEEE
Confidence 99999999999988776544
|
Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week |
| >cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin | Back alignment and domain information |
|---|
Probab=99.09 E-value=1e-09 Score=81.87 Aligned_cols=63 Identities=19% Similarity=0.293 Sum_probs=51.6
Q ss_pred CcCceeeEEeeCCeeecc-CCceEEeec-CCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEEe
Q psy7039 166 SEPFLNHGWSINGQVCQI-GGRADVQTT-KSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHV 228 (516)
Q Consensus 166 ~~p~~~i~W~~~~~~~~~-~~~~~~~~~-~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~ 228 (516)
|.|.|.+.|++++..+.. ..++.+... ....+|.|.+++.+|+|.|+|.+.|..|.......+
T Consensus 9 G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l 73 (75)
T cd05744 9 AIPPPQIFWKKNNEMLTYNTDRISLYQDNCGRICLLIQNANKEDAGWYTVSAVNEAGVVSCNARL 73 (75)
T ss_pred ecCCCeEEEEECCEECCCCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCcEEEEEEE
Confidence 999999999999998874 355655433 344589999999999999999999999988766543
|
Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP). |
| >cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR | Back alignment and domain information |
|---|
Probab=99.08 E-value=9.2e-10 Score=80.50 Aligned_cols=68 Identities=21% Similarity=0.423 Sum_probs=54.9
Q ss_pred CCeEEEEEEEeeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEE
Q psy7039 370 GEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKV 444 (516)
Q Consensus 370 g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l 444 (516)
|+.+.|.|.+.|.|.|.|.|++++..+....++.. ....|.|.++ .|.|.|+|.|.|..|....++.|
T Consensus 1 G~~v~L~C~a~G~P~P~v~W~k~g~~l~~~~~~~~----~~~~L~i~~~---~d~G~Y~C~A~N~~G~~~~~a~l 68 (69)
T cd05739 1 GGSVNLTCVAVGAPMPYVKWMKGGEELTKEDEMPV----GRNVLELTNI---YESANYTCVAISSLGMIEATAQV 68 (69)
T ss_pred CCeEEEEEEeeecCCCEEEEEECCEECCCccceec----CccEEEEecc---ccCeeEEEEEEeCCCEEEEEEEE
Confidence 57899999999999999999999988755443322 2246888886 56899999999999998777665
|
Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR). |
| >cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) | Back alignment and domain information |
|---|
Probab=99.08 E-value=8.5e-10 Score=82.69 Aligned_cols=73 Identities=29% Similarity=0.307 Sum_probs=58.5
Q ss_pred CCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCce-EEeecCCeeEEEeccCCCCC
Q psy7039 129 GQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRA-DVQTTKSETVLDIPFCSRSD 207 (516)
Q Consensus 129 g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~-~~~~~~~~~~l~i~~~~~~d 207 (516)
|+.+.|.|.+. |.|.|.++|++++..+...... .... ....|.|.+++.+|
T Consensus 1 G~~v~l~C~~~--------------------------G~P~p~i~W~k~g~~i~~~~~~~~~~~--~~~~L~I~~~~~~D 52 (76)
T cd05867 1 GETARLDCQVE--------------------------GIPTPNITWSINGAPIEGTDPDPRRHV--SSGALILTDVQPSD 52 (76)
T ss_pred CCeEEEEEEee--------------------------EeCCCeEEEEECCEECCCCCCCceEEe--eCCEEEECCCChhh
Confidence 68899999999 9999999999999887653211 1211 24579999999999
Q ss_pred CeeEEEEEEcCCCceEEEEEee
Q psy7039 208 TGHYSLTLENNLGTATASAHVT 229 (516)
Q Consensus 208 ~g~Y~c~~~~~~g~~~~~~~~~ 229 (516)
+|.|.|.+.|..|.......+.
T Consensus 53 ~G~Y~C~a~N~~G~~~~~~~l~ 74 (76)
T cd05867 53 TAVYQCEARNRHGNLLANAHVH 74 (76)
T ss_pred CEEEEEEEECCCCeEEEEEEEE
Confidence 9999999999999887665543
|
Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM. |
| >cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily | Back alignment and domain information |
|---|
Probab=99.08 E-value=5.5e-10 Score=83.52 Aligned_cols=71 Identities=24% Similarity=0.403 Sum_probs=56.4
Q ss_pred EEEEEEEeeecCCceEEEECCeec-C--CCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEEEE
Q psy7039 373 FTITVPFSGRPKPTPIWTVNGDEV-S--PDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYV 446 (516)
Q Consensus 373 ~~l~C~~~g~p~~~i~W~~~~~~l-~--~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~v 446 (516)
+.|.|.+.|.|.|.+.|++++... . ...++... .....|.|.++.. .|+|.|.|.|.|..|..+.++.|.|
T Consensus 1 a~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~--~~~~~L~I~~~~~-~D~G~Y~C~A~N~~G~~~~~~~l~V 74 (75)
T cd05763 1 ARLECAATGHPTPQIAWQKDGGTDFPAARERRMHVM--PEDDVFFIVDVKI-EDTGVYSCTAQNTAGSISANATLTV 74 (75)
T ss_pred CEeEeecccccCCEEEEEeCCCccCCcccccceEEe--cCCCEEEEeeCCc-ccCEEEEEEEEcCCCEEEeeEEEEE
Confidence 368999999999999999998632 1 12233332 2334799999999 9999999999999999888888877
|
Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. |
| >cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related) | Back alignment and domain information |
|---|
Probab=99.08 E-value=7.5e-10 Score=83.08 Aligned_cols=74 Identities=20% Similarity=0.180 Sum_probs=60.2
Q ss_pred CCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEeecCCeeEEEeccCCCCCC
Q psy7039 129 GQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDT 208 (516)
Q Consensus 129 g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~ 208 (516)
|+.+.|.|.+. |.|.|.+.|++++..+...... .........|.|.+++.+|+
T Consensus 1 G~~~~l~C~~~--------------------------g~P~p~i~W~~~g~~~~~~~~~-~~~~~~~~~L~i~~v~~~D~ 53 (76)
T cd04978 1 GETGRLDCEAE--------------------------GIPQPTITWRLNGVPIEELPPD-PRRRVDGGTLILSNVQPNDT 53 (76)
T ss_pred CCeEEEEEEce--------------------------eeCCCEEEEEECCEECCCCCCc-ceEEccCCEEEECCCChhhC
Confidence 68899999999 9999999999999888654432 12233456899999999999
Q ss_pred eeEEEEEEcCCCceEEEEEee
Q psy7039 209 GHYSLTLENNLGTATASAHVT 229 (516)
Q Consensus 209 g~Y~c~~~~~~g~~~~~~~~~ 229 (516)
|.|+|.+.|..|...+...+.
T Consensus 54 G~Y~C~A~N~~G~~~~~~~l~ 74 (76)
T cd04978 54 AVYQCNASNVHGYLLANAFVH 74 (76)
T ss_pred EEEEEEEEccCCeEEEeEEEE
Confidence 999999999999887765543
|
Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. |
| >cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule) | Back alignment and domain information |
|---|
Probab=99.08 E-value=7.8e-10 Score=82.75 Aligned_cols=74 Identities=16% Similarity=0.213 Sum_probs=58.4
Q ss_pred CCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEeecCCeeEEEeccCCCCCC
Q psy7039 129 GQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDT 208 (516)
Q Consensus 129 g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~ 208 (516)
|+.+.|.|.+. |.|.|.++|++++.++........... ....|.|.+++..|+
T Consensus 1 g~~~~l~C~a~--------------------------G~P~P~i~W~k~g~~i~~~~~~~~~~~-~~~~l~i~~v~~~D~ 53 (76)
T cd05868 1 GEDGTLICRAN--------------------------GNPKPSISWLTNGVPIEIAPTDPSRKV-DGDTIIFSKVQERSS 53 (76)
T ss_pred CCCEEEEEEee--------------------------EeCCCeEEEEECCEEccccCCCceEEe-cCCEEEECCCCHhhC
Confidence 67899999999 999999999999998854322111111 224799999999999
Q ss_pred eeEEEEEEcCCCceEEEEEee
Q psy7039 209 GHYSLTLENNLGTATASAHVT 229 (516)
Q Consensus 209 g~Y~c~~~~~~g~~~~~~~~~ 229 (516)
|.|+|.+.|..|...++..+.
T Consensus 54 G~Y~C~A~N~~G~~~~~~~l~ 74 (76)
T cd05868 54 AVYQCNASNEYGYLLANAFVN 74 (76)
T ss_pred EEEEEEEEcCCCEEEEEEEEE
Confidence 999999999999988776543
|
Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system. |
| >cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.3e-09 Score=80.42 Aligned_cols=60 Identities=25% Similarity=0.362 Sum_probs=50.2
Q ss_pred CcCceeeEEeeCCeeeccCCceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEEe
Q psy7039 166 SEPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHV 228 (516)
Q Consensus 166 ~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~ 228 (516)
|.|.|.++|++++..+....++.+... ..|.|.+++.+|+|.|+|.+.|..|....+..+
T Consensus 10 G~P~p~v~W~k~g~~~~~~~~~~~~~~---~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~L 69 (71)
T cd05723 10 GKPTPTVKWVKNGDMVIPSDYFKIVKE---HNLQVLGLVKSDEGFYQCIAENDVGNVQASAQL 69 (71)
T ss_pred EeCCCEEEEEECCeECCCCCCEEEEec---CCEEEEcCCcccCEEEEEEEEcCCCEEEEEEEE
Confidence 999999999999988876666665433 358888999999999999999999998776544
|
Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain. |
| >cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) | Back alignment and domain information |
|---|
Probab=99.07 E-value=1e-09 Score=85.12 Aligned_cols=76 Identities=20% Similarity=0.302 Sum_probs=62.5
Q ss_pred CcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEeecCCeeEE
Q psy7039 119 STLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTTKSETVL 198 (516)
Q Consensus 119 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l 198 (516)
..+++..+.+|+++.|.|.+. |. .+.+.|++++..+.. .++.+ ......|
T Consensus 8 ~~~~~~~v~~g~~v~l~C~a~--------------------------g~-~p~i~W~kng~~l~~-~~~~~--~~~~~~L 57 (91)
T cd05740 8 NSVGNQPPEDNQPVTLTCEAE--------------------------GQ-ATYIWWVNNGSLLVP-PRLQL--SNDNRTL 57 (91)
T ss_pred cccCccccccCCcEEEEEEeC--------------------------CC-CCEEEEEECCEECCC-CCEEE--eCCCCEE
Confidence 445567899999999999999 88 999999999987754 34333 3344589
Q ss_pred EeccCCCCCCeeEEEEEEcCCCceEE
Q psy7039 199 DIPFCSRSDTGHYSLTLENNLGTATA 224 (516)
Q Consensus 199 ~i~~~~~~d~g~Y~c~~~~~~g~~~~ 224 (516)
.|.+++.+|+|.|.|.+.|..|....
T Consensus 58 ~I~~v~~~D~G~Y~C~a~N~~G~~~S 83 (91)
T cd05740 58 TFNNVTRSDTGHYQCEASNEVSNMTS 83 (91)
T ss_pred EECcCChhhCEEEEEEEEcCCCCEEe
Confidence 99999999999999999999987644
|
Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the |
| >cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR) | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.1e-09 Score=82.64 Aligned_cols=74 Identities=14% Similarity=0.224 Sum_probs=61.5
Q ss_pred cceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEeecCCeeEEEec
Q psy7039 122 NDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIP 201 (516)
Q Consensus 122 ~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~ 201 (516)
....+.+|+.+.|.|.+. +. .+.+.|++++..+....++.+. ...|.|.
T Consensus 2 ~~~~~~~G~~v~l~C~~~--------------------------~~-~~~v~W~k~g~~l~~~~~~~~~----~~~L~I~ 50 (79)
T cd04973 2 ESYSAHPGDLLQLRCRLR--------------------------DD-VQSINWTKDGVQLGENNRTRIT----GEEVQIK 50 (79)
T ss_pred CcEEecCCCCEEEEEEec--------------------------CC-CceEEEeeCCcCCCCCceEEEe----CCEEEEC
Confidence 446788999999999999 75 5689999999998876666653 2479999
Q ss_pred cCCCCCCeeEEEEEEcCCCceEEEE
Q psy7039 202 FCSRSDTGHYSLTLENNLGTATASA 226 (516)
Q Consensus 202 ~~~~~d~g~Y~c~~~~~~g~~~~~~ 226 (516)
+++.+|+|.|+|.+.|..|......
T Consensus 51 ~~~~~DsG~Y~C~a~n~~g~~~~~~ 75 (79)
T cd04973 51 DAVPRDSGLYACVTSSPSGSDTTYF 75 (79)
T ss_pred CCChhhCEEEEEEEeCCCCcccEEE
Confidence 9999999999999999888765544
|
Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs. |
| >cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1) | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.4e-09 Score=83.00 Aligned_cols=79 Identities=25% Similarity=0.390 Sum_probs=64.0
Q ss_pred EEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEE
Q psy7039 365 MTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKV 444 (516)
Q Consensus 365 ~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l 444 (516)
+....|+.+.|.|.+.|.|.|.+.|++++..+....... .......|.|.++.. +|+|.|.|.|.|..|....++.|
T Consensus 4 ~~~~~G~~v~L~C~~~g~p~p~i~W~k~~~~~~~~~~~~--~~~~~~~L~i~~v~~-~D~G~Y~C~a~N~~G~~~~~~~v 80 (82)
T cd05856 4 IARPVGSSVRLKCVASGNPRPDITWLKDNKPLTPTEIGE--SRKKKWTLSLKNLKP-EDSGKYTCHVSNRAGEINATYKV 80 (82)
T ss_pred eeccCCCeEEEEEEeeEeCCCcEEEEECCcCCcCCccce--ecCceEEEEEccCCh-hhCEEEEEEEEcCCccEEEEEEE
Confidence 456789999999999999999999999998765433222 223446899999999 99999999999999988777766
Q ss_pred EE
Q psy7039 445 YV 446 (516)
Q Consensus 445 ~v 446 (516)
.|
T Consensus 81 ~v 82 (82)
T cd05856 81 DV 82 (82)
T ss_pred eC
Confidence 53
|
Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors. |
| >cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.1e-09 Score=86.62 Aligned_cols=80 Identities=11% Similarity=0.033 Sum_probs=65.1
Q ss_pred ceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEeec------CCee
Q psy7039 123 DVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTT------KSET 196 (516)
Q Consensus 123 ~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~------~~~~ 196 (516)
...+..|+.+.|.|.+. |.|.|.+.|++++.++....+...... ...+
T Consensus 12 ~~~~~~~~~~~l~~~v~--------------------------g~P~P~v~W~kdg~~l~~~~~~~~~~~~~~~~~~~~s 65 (101)
T cd05859 12 LEFANLHEVKEFVVEVE--------------------------AYPPPQIRWLKDNRTLIENLTEITTSEHNVQETRYVS 65 (101)
T ss_pred eEEEecCCcEEEEEEEE--------------------------EeCCCceEEEECCEECcCCcceEEeccccccceeecc
Confidence 46678899999999999 999999999999999876554332211 2246
Q ss_pred EEEeccCCCCCCeeEEEEEEcCCCceEEEEEe
Q psy7039 197 VLDIPFCSRSDTGHYSLTLENNLGTATASAHV 228 (516)
Q Consensus 197 ~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~ 228 (516)
.|.|.+++.+|+|.|+|.+.|..|....+..+
T Consensus 66 ~L~I~~v~~~D~G~Ytc~A~N~~g~~~~t~~l 97 (101)
T cd05859 66 KLKLIRAKEEDSGLYTALAQNEDAVKSYTFAL 97 (101)
T ss_pred EEEEeeCCHHHCEEEEEEEEcCCceEEEEEEE
Confidence 89999999999999999999999887665543
|
IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development. |
| >cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors | Back alignment and domain information |
|---|
Probab=99.07 E-value=9.7e-10 Score=85.40 Aligned_cols=77 Identities=23% Similarity=0.377 Sum_probs=62.7
Q ss_pred CCeEEEEEEEeeecCCceEEEECCeec--------CCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEE
Q psy7039 370 GEEFTITVPFSGRPKPTPIWTVNGDEV--------SPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSAS 441 (516)
Q Consensus 370 g~~~~l~C~~~g~p~~~i~W~~~~~~l--------~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s 441 (516)
|+.+.|.|.+.|.|.|.+.|++++..+ ....++.+.. ...|.|.++.. .|+|.|.|.|.|..|.....
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v~~---~~~L~I~~v~~-~D~G~Y~C~a~N~~G~~~~~ 76 (90)
T cd05726 1 GRTVTFQCEATGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVSQ---TGDLTITNVQR-SDVGYYICQTLNVAGSILTK 76 (90)
T ss_pred CCEEEEEEECCccCCCEEEEEeCCCcceeecccCCCCCCeEEECC---CCeEEEeeCCh-hhCEEEEEEEEcCCCceEEE
Confidence 678999999999999999999987642 1233444321 23699999999 99999999999999999999
Q ss_pred EEEEEecCC
Q psy7039 442 CKVYVVDKP 450 (516)
Q Consensus 442 ~~l~v~~~p 450 (516)
+.|.|....
T Consensus 77 ~~l~V~~~~ 85 (90)
T cd05726 77 AYLEVTDVI 85 (90)
T ss_pred EEEEEeecc
Confidence 999998643
|
Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni |
| >cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM) | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.8e-09 Score=83.33 Aligned_cols=76 Identities=21% Similarity=0.240 Sum_probs=61.8
Q ss_pred CCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccC-CceEEee----cCCeeEEEeccC
Q psy7039 129 GQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIG-GRADVQT----TKSETVLDIPFC 203 (516)
Q Consensus 129 g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~-~~~~~~~----~~~~~~l~i~~~ 203 (516)
|+.+.|.|.+. |.|.+.+.|++++..+... .++.+.. ....+.|.|.++
T Consensus 1 g~~~~l~C~~~--------------------------g~p~~~i~W~k~~~~i~~~~~r~~~~~~~~~~~~~s~L~I~~~ 54 (88)
T cd05735 1 GQKKEMSCTAH--------------------------GEKPIIVRWEKEDRIINPEMSRYLVSTKEVGDEVISTLQILPT 54 (88)
T ss_pred CCeEEEEEEEE--------------------------CCCCCEEEEeeCCEECCCCCCcEEEEEecCCCcEEEEEEECCC
Confidence 78899999999 9999999999999887643 4555442 122378999999
Q ss_pred CCCCCeeEEEEEEcCCCceEEEEEeec
Q psy7039 204 SRSDTGHYSLTLENNLGTATASAHVTG 230 (516)
Q Consensus 204 ~~~d~g~Y~c~~~~~~g~~~~~~~~~~ 230 (516)
..+|+|.|+|.+.|..|.......+.+
T Consensus 55 ~~~D~G~YtC~A~N~~G~~~~~~~L~V 81 (88)
T cd05735 55 VREDSGFFSCHAINSYGEDRGIIQLTV 81 (88)
T ss_pred CcccCEEEEEEEEcCCCcceEEEEEEE
Confidence 999999999999999998877665443
|
Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion. |
| >cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3) | Back alignment and domain information |
|---|
Probab=99.06 E-value=7.5e-10 Score=79.92 Aligned_cols=54 Identities=20% Similarity=0.292 Sum_probs=46.0
Q ss_pred CcCceeeEEeeCCeeeccCCceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEE
Q psy7039 166 SEPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAH 227 (516)
Q Consensus 166 ~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~ 227 (516)
|.|.|.+.|++++..+.. ....+.|.|.++..+|+|.|+|.+.|..|....+..
T Consensus 9 g~P~P~v~W~kdg~~l~~--------~~~~~~L~i~~v~~~D~G~YtC~a~N~~g~~~~~~~ 62 (67)
T cd05863 9 AYPPPEFQWYKDGKLISG--------KHSQHSLQIKDVTEASAGTYTLVLWNSAAGLEKRIS 62 (67)
T ss_pred EeCCCEEEEEECCEECcc--------cCCcCEEEECCCCHHHCEEEEEEEEECCccEEEEEE
Confidence 999999999999998852 123469999999999999999999999997666544
|
Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth. |
| >cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.6e-09 Score=84.43 Aligned_cols=87 Identities=23% Similarity=0.221 Sum_probs=68.1
Q ss_pred CCccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCce-eeEEeeCCeeeccC--CceEE
Q psy7039 113 APRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFL-NHGWSINGQVCQIG--GRADV 189 (516)
Q Consensus 113 ~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~i~W~~~~~~~~~~--~~~~~ 189 (516)
||.|. .+....+..|+.+.|.|.+. |.|.+ .+.|++++..+... .++.+
T Consensus 2 pp~i~--~~~~~~~~~G~~v~L~C~~~--------------------------g~P~P~~v~W~~~~~~i~~~~~~r~~i 53 (98)
T cd05758 2 PPIIT--SEATQYAILGDKGRVECFIF--------------------------STPPPDRIVWTWKENELESGSSGRYTV 53 (98)
T ss_pred CCeEc--CCCcEEEeCCCcEEEEEEEc--------------------------ccCCCCEeEEEECCEEccCCCCCCEEE
Confidence 45553 34566789999999999999 99998 69999999888653 46665
Q ss_pred eec----CCeeEEEeccCCC-CCCeeEEEEEEcCCCceEEEEE
Q psy7039 190 QTT----KSETVLDIPFCSR-SDTGHYSLTLENNLGTATASAH 227 (516)
Q Consensus 190 ~~~----~~~~~l~i~~~~~-~d~g~Y~c~~~~~~g~~~~~~~ 227 (516)
... +..+.|.|.++.. +|.|.|.|.|.|..|.....+.
T Consensus 54 ~~~~~~~~~~s~L~I~~v~~~d~~G~Y~C~A~N~~G~~~~~~~ 96 (98)
T cd05758 54 ETDPSPGGVLSTLTISNTQESDFQTSYNCTAWNSFGSGTAIIS 96 (98)
T ss_pred EEecCCCceEEEEEECCccccccceeEEEEEEcCCCcccEEEE
Confidence 533 3346899999999 5589999999999998776543
|
Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. |
| >cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.3e-09 Score=81.09 Aligned_cols=70 Identities=29% Similarity=0.442 Sum_probs=56.8
Q ss_pred EEEEEEEeeecCCceEEEECCeecC--CCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCc-eeEEEEEEE
Q psy7039 373 FTITVPFSGRPKPTPIWTVNGDEVS--PDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGS-DSASCKVYV 446 (516)
Q Consensus 373 ~~l~C~~~g~p~~~i~W~~~~~~l~--~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~-~s~s~~l~v 446 (516)
+.|.|.+.|.|.|.|.|++++..+. ...++... . ...|.|.++.. .|.|.|.|.|.|..|. .+..+.|.|
T Consensus 1 a~l~C~~~G~P~p~v~W~k~~~~~~~~~~~~~~~~--~-~g~L~i~~~~~-~D~G~Y~C~a~N~~G~~~s~~a~l~v 73 (74)
T cd05738 1 ATMLCAASGNPDPEITWFKDFLPVDTTSNGRIKQL--R-SGALQIENSEE-SDQGKYECVATNSAGTRYSAPANLYV 73 (74)
T ss_pred CEEEEEEeEecCCEEEEEECCEECccCCCCCEEEc--C-CcEEEECCCCh-hhCEEEEEEEECCCCceEcccEEEEE
Confidence 3689999999999999999998875 33444432 2 23699999999 9999999999999998 467777766
|
Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. |
| >cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2) | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.2e-09 Score=84.75 Aligned_cols=76 Identities=20% Similarity=0.350 Sum_probs=58.4
Q ss_pred CCeEEEEEEEeeecCCceEEEEC----CeecCCCCc--eEEEEc-------CCeEEEEEcCceecCCceEEEEEEEcCCC
Q psy7039 370 GEEFTITVPFSGRPKPTPIWTVN----GDEVSPDGR--IKFETS-------ENQTIYRNKSAKRATDSGSYTIQLVNTVG 436 (516)
Q Consensus 370 g~~~~l~C~~~g~p~~~i~W~~~----~~~l~~~~~--~~~~~~-------~~~~~l~i~~~~~~~~~g~y~c~a~n~~G 436 (516)
|+.+.|.|.+.|.|.|.|.|+++ +..+..+.. ..+... .....|.|.++.. +|+|.|+|.|.|..|
T Consensus 1 G~~v~L~C~~~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~-~D~G~Y~C~A~N~~G 79 (90)
T cd05858 1 GSTVEFVCKVYSDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTF-EDAGEYTCLAGNSIG 79 (90)
T ss_pred CCeEEEEEEEecCCCCEEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCH-HHCEEEEEEEEeCCC
Confidence 67899999999999999999984 333322221 111111 1235799999999 999999999999999
Q ss_pred ceeEEEEEEE
Q psy7039 437 SDSASCKVYV 446 (516)
Q Consensus 437 ~~s~s~~l~v 446 (516)
....++.|.|
T Consensus 80 ~~~~~a~L~V 89 (90)
T cd05858 80 ISHHSAWLTV 89 (90)
T ss_pred cccceEEEEE
Confidence 9988888877
|
Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination. |
| >cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors | Back alignment and domain information |
|---|
Probab=99.04 E-value=7.7e-10 Score=81.20 Aligned_cols=69 Identities=28% Similarity=0.464 Sum_probs=56.6
Q ss_pred EEEEEEEeeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEEEE
Q psy7039 373 FTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYV 446 (516)
Q Consensus 373 ~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~v 446 (516)
+.|.|.+.|.|.|.+.|++++..+.. .++... ....|.|.++.. +|+|.|+|.|.|..|....++.|.|
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~~~~-~~~~~~---~~~~L~I~~v~~-~D~G~Y~C~a~N~~G~~~~~~~l~V 69 (69)
T cd05725 1 VEFQCEVGGDPVPTVLWRKEDGELPK-GRAEIL---DDKSLKIRNVTA-GDEGSYTCEAENMVGKIEASASLTV 69 (69)
T ss_pred CEEEEECccCCCCEEEEEECCccCCC-CcEEEe---eCCEEEECcCCh-hHCEEEEEEEEcCCCcEEEEEEEEC
Confidence 46899999999999999999876543 344443 234799999999 9999999999999999888877764
|
Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni |
| >cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.2e-09 Score=80.19 Aligned_cols=59 Identities=24% Similarity=0.369 Sum_probs=50.1
Q ss_pred CcCceeeEEeeCCeeeccCCceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEE
Q psy7039 166 SEPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAH 227 (516)
Q Consensus 166 ~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~ 227 (516)
|.|.+.+.|++++..+....++.+.. ...|.|.+++.+|+|.|+|.+.|..|....+..
T Consensus 9 g~P~p~i~W~k~g~~~~~~~~~~~~~---~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~ 67 (69)
T cd05746 9 GDPEPTITWNKDGVQVTESGKFHISP---EGYLAIRDVGVADQGRYECVARNTIGYASVSMV 67 (69)
T ss_pred EeCCCEEEEEECCEECCCCCCEEECC---CCEEEECcCChhhCEEEEEEEECCCCcEEEEEE
Confidence 99999999999998887666665532 358999999999999999999999998876653
|
Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self. |
| >PF00041 fn3: Fibronectin type III domain; InterPro: IPR003961 Fibronectins are multi-domain glycoproteins found in a soluble form in plasma, and in an insoluble form in loose connective tissue and basement membranes [] | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.3e-09 Score=83.66 Aligned_cols=83 Identities=41% Similarity=0.730 Sum_probs=69.6
Q ss_pred CCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCCCe-EEeEEeecCCcEEEeCCCcCCCeEEEEEEEecCC
Q psy7039 15 GKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNW-EKAVVVPAGETSCTVPGLIEGETYQFQVRAVNAA 93 (516)
Q Consensus 15 ~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~~~-~~~~~~~~~~~~~~i~~l~~~~~y~~~~~a~n~~ 93 (516)
++|.+|++..++.+++.|+|.+|. ++++.+.+|.|+++..++.. ............++|.+|.+++.|.|+++|.+..
T Consensus 1 s~P~~l~v~~~~~~sv~v~W~~~~-~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~v~a~~~~ 79 (85)
T PF00041_consen 1 SAPENLSVSNISPTSVTVSWKPPS-SGNGPITGYRVEYRSVNSTSDWQEVTVPGNETSYTITGLQPGTTYEFRVRAVNSD 79 (85)
T ss_dssp SSSEEEEEEEECSSEEEEEEEESS-STSSSESEEEEEEEETTSSSEEEEEEEETTSSEEEEESCCTTSEEEEEEEEEETT
T ss_pred CcCcCeEEEECCCCEEEEEEECCC-CCCCCeeEEEEEEEecccceeeeeeeeeeeeeeeeeccCCCCCEEEEEEEEEeCC
Confidence 478999999999999999999986 67788999999999877732 3333455566799999999999999999999998
Q ss_pred CCCCC
Q psy7039 94 GPGEA 98 (516)
Q Consensus 94 g~~~~ 98 (516)
|.+.+
T Consensus 80 g~g~~ 84 (85)
T PF00041_consen 80 GEGPP 84 (85)
T ss_dssp EEEEE
T ss_pred cCcCC
Confidence 86643
|
They contain multiple copies of 3 repeat regions (types I, II and III), which bind to a variety of substances including heparin, collagen, DNA, actin, fibrin and fibronectin receptors on cell surfaces. The wide variety of these substances means that fibronectins are involved in a number of important functions: e.g., wound healing; cell adhesion; blood coagulation; cell differentiation and migration; maintenance of the cellular cytoskeleton; and tumour metastasis []. The role of fibronectin in cell differentiation is demonstrated by the marked reduction in the expression of its gene when neoplastic transformation occurs. Cell attachment has been found to be mediated by the binding of the tetrapeptide RGDS to integrins on the cell surface [], although related sequences can also display cell adhesion activity. Plasma fibronectin occurs as a dimer of 2 different subunits, linked together by 2 disulphide bonds near the C terminus. The difference in the 2 chains occurs in the type III repeat region and is caused by alternative splicing of the mRNA from one gene []. The observation that, in a given protein, an individual repeat of one of the 3 types (e.g., the first FnIII repeat) shows much less similarity to its subsequent tandem repeats within that protein than to its equivalent repeat between fibronectins from other species, has suggested that the repeating structure of fibronectin arose at an early stage of evolution. It also seems to suggest that the structure is subject to high selective pressure []. The fibronectin type III repeat region is an approximately 100 amino acid domain, different tandem repeats of which contain binding sites for DNA, heparin and the cell surface []. The superfamily of sequences believed to contain FnIII repeats represents 45 different families, the majority of which are involved in cell surface binding in some manner, or are receptor protein tyrosine kinases, or cytokine receptors.; GO: 0005515 protein binding; PDB: 1UEM_A 1TDQ_A 1X5I_A 2IC2_B 2IBG_C 2IBB_A 3R8Q_A 2FNB_A 1FNH_A 2EDB_A .... |
| >cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.8e-09 Score=81.62 Aligned_cols=63 Identities=21% Similarity=0.304 Sum_probs=51.4
Q ss_pred CcCceeeEEeeCCeeeccCCceEEee-------cCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEEe
Q psy7039 166 SEPFLNHGWSINGQVCQIGGRADVQT-------TKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHV 228 (516)
Q Consensus 166 ~~p~~~i~W~~~~~~~~~~~~~~~~~-------~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~ 228 (516)
|.|.|.++|++++..+....+..... ....+.|.|.+++.+|+|.|+|.|.|..|....++.+
T Consensus 9 G~P~P~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~~ 78 (81)
T cd04971 9 GNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQDSKSISA 78 (81)
T ss_pred eeCCCcEEEEECCEECcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCeeeEEEe
Confidence 99999999999999998765443321 1235689999999999999999999999998776643
|
TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun |
| >cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.6e-09 Score=80.89 Aligned_cols=63 Identities=16% Similarity=0.247 Sum_probs=51.5
Q ss_pred CcCceeeEEeeCCeeeccCCceEEe-----ecCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEEe
Q psy7039 166 SEPFLNHGWSINGQVCQIGGRADVQ-----TTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHV 228 (516)
Q Consensus 166 ~~p~~~i~W~~~~~~~~~~~~~~~~-----~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~ 228 (516)
|.|.|+++|++++..+....+.... .....+.|.|.+++.+|+|.|+|.|+|..|....++.+
T Consensus 9 G~P~Pti~W~kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~~~~ 76 (79)
T cd05855 9 GNPKPTLQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDEKNVSA 76 (79)
T ss_pred EeCCCceEEEECCEECCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCcccceEEEe
Confidence 9999999999999999876654322 12345689999999999999999999999988766543
|
TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems. |
| >cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.7e-09 Score=83.34 Aligned_cols=80 Identities=25% Similarity=0.435 Sum_probs=64.0
Q ss_pred cccEEEEcCCeEEEEEEE-eeecCCceEEEECCeecCC-CCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCce-
Q psy7039 362 IRDMTVLAGEEFTITVPF-SGRPKPTPIWTVNGDEVSP-DGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSD- 438 (516)
Q Consensus 362 ~~~~~v~~g~~~~l~C~~-~g~p~~~i~W~~~~~~l~~-~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~- 438 (516)
+.+..+..|+++.|.|.+ .|.|.|.+.|++++..+.. ..++.... ...|.|.++.. .|.|.|+|.|.|..|..
T Consensus 3 p~~~~~~~G~~v~l~C~~~~g~p~p~i~W~k~g~~~~~~~~~~~~~~---~~~L~I~~~~~-~D~G~Y~C~a~N~~G~~~ 78 (86)
T cd05724 3 PSDTQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLDNERVRIVD---DGNLLIAEARK-SDEGTYKCVATNMVGERE 78 (86)
T ss_pred CccEEEeCCCCEEEEEECCCCCCCCEEEEEECCEECCCCCCCEEEcc---CCEEEEeECCc-ccCEEEEEEEEeccCcee
Confidence 356788999999999998 7999999999999988765 33443322 34799999999 99999999999999985
Q ss_pred eEEEEEE
Q psy7039 439 SASCKVY 445 (516)
Q Consensus 439 s~s~~l~ 445 (516)
+..+.|.
T Consensus 79 s~~~~l~ 85 (86)
T cd05724 79 SAAARLS 85 (86)
T ss_pred eeeEEEE
Confidence 4445544
|
Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago |
| >cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins | Back alignment and domain information |
|---|
Probab=99.02 E-value=3.4e-09 Score=84.17 Aligned_cols=83 Identities=28% Similarity=0.347 Sum_probs=61.4
Q ss_pred CCccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccC-----Cce
Q psy7039 113 APRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIG-----GRA 187 (516)
Q Consensus 113 ~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~-----~~~ 187 (516)
+|.|. ..+..+.+.+|+.+.|.|.+. |.|.+.+.|++++..+... .+.
T Consensus 1 ~P~i~-~~p~~~~v~~G~~~~l~C~~~--------------------------g~P~p~i~W~k~g~~l~~~~~~~~~~~ 53 (100)
T cd07693 1 PPRIV-EHPSDLIVSKGDPATLNCKAE--------------------------GRPTPTIQWLKNGQPLETDKDDPRSHR 53 (100)
T ss_pred CCeEE-ecCceeEEcCCCeEEEEeeCC--------------------------cCCCCEEEEEECCEECccccCCCCcce
Confidence 35555 566778999999999999999 9999999999999888651 122
Q ss_pred EEeecCCeeEEEec--cCCCCCCeeEEEEEEcCCCce
Q psy7039 188 DVQTTKSETVLDIP--FCSRSDTGHYSLTLENNLGTA 222 (516)
Q Consensus 188 ~~~~~~~~~~l~i~--~~~~~d~g~Y~c~~~~~~g~~ 222 (516)
.....+....+.|. .++.+|+|.|+|.+.|..|..
T Consensus 54 ~~~~~~~~~~~~i~~~~~~~~D~G~Y~C~a~N~~G~~ 90 (100)
T cd07693 54 IVLPSGSLFFLRVVHGRKGRSDEGVYVCVAHNSLGEA 90 (100)
T ss_pred EEecCCcEEEEEeeccCCCcCcCEEEEEEEEccccce
Confidence 22223333333333 346899999999999999873
|
Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res |
| >cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors | Back alignment and domain information |
|---|
Probab=99.01 E-value=2.1e-09 Score=82.75 Aligned_cols=75 Identities=20% Similarity=0.330 Sum_probs=61.6
Q ss_pred ccceEEecCCeEEEEEee-eeccccccCccccccccccCccceeecCcCceeeEEeeCCeeecc-CCceEEeecCCeeEE
Q psy7039 121 LNDVKIKAGQSFSFDVKE-FRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQI-GGRADVQTTKSETVL 198 (516)
Q Consensus 121 ~~~~~v~~g~~~~l~C~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~-~~~~~~~~~~~~~~l 198 (516)
+..+.+.+|+.+.|.|.+ . +.|.+.+.|++++..+.. ..++.+.. ...|
T Consensus 3 p~~~~~~~G~~v~l~C~~~~--------------------------g~p~p~i~W~k~g~~~~~~~~~~~~~~---~~~L 53 (86)
T cd05724 3 PSDTQVAVGEMAVLECSPPR--------------------------GHPEPTVSWRKDGQPLNLDNERVRIVD---DGNL 53 (86)
T ss_pred CccEEEeCCCCEEEEEECCC--------------------------CCCCCEEEEEECCEECCCCCCCEEEcc---CCEE
Confidence 456788899999999998 6 889999999999988775 33444432 4589
Q ss_pred EeccCCCCCCeeEEEEEEcCCCceEE
Q psy7039 199 DIPFCSRSDTGHYSLTLENNLGTATA 224 (516)
Q Consensus 199 ~i~~~~~~d~g~Y~c~~~~~~g~~~~ 224 (516)
.|.+++.+|+|.|+|.+.|..|....
T Consensus 54 ~I~~~~~~D~G~Y~C~a~N~~G~~~s 79 (86)
T cd05724 54 LIAEARKSDEGTYKCVATNMVGERES 79 (86)
T ss_pred EEeECCcccCEEEEEEEEeccCceee
Confidence 99999999999999999998887543
|
Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago |
| >cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.7e-09 Score=79.93 Aligned_cols=70 Identities=24% Similarity=0.391 Sum_probs=57.0
Q ss_pred EEEEEEEeeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEEEE
Q psy7039 373 FTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYV 446 (516)
Q Consensus 373 ~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~v 446 (516)
+.|.|.+.|.|.|.+.|++++..+... +.. .......|.|.++.. .|.|.|+|.|.|..|..+.++.|.|
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~~~~~-~~~--~~~~~~~L~i~~v~~-~D~G~Y~C~a~N~~G~~~~~~~l~V 70 (71)
T cd05731 1 LLLECIAEGLPTPEISWIKIGGELPAD-RTK--FENFNKTLKIDNVSE-EDDGEYRCTASNSLGSARHTISVTV 70 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCeECCCC-cee--EecCCCEEEECCCCH-HHCEEEEEEEEeCCceEEEEEEEEE
Confidence 368999999999999999998766432 222 223345799999999 9999999999999999888888776
|
Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin. |
| >cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins | Back alignment and domain information |
|---|
Probab=99.01 E-value=4.9e-09 Score=81.67 Aligned_cols=82 Identities=18% Similarity=0.288 Sum_probs=63.3
Q ss_pred cccEEEEcCCeEEEEEEEeeecCCceEEEE-CCeecCCCCceEEEE-cCCeEEEEEcCceecCCceEEEEEEEcCCCc-e
Q psy7039 362 IRDMTVLAGEEFTITVPFSGRPKPTPIWTV-NGDEVSPDGRIKFET-SENQTIYRNKSAKRATDSGSYTIQLVNTVGS-D 438 (516)
Q Consensus 362 ~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~-~~~~l~~~~~~~~~~-~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~-~ 438 (516)
+....+..|+.+.|.|.+.|.|. .+.|++ ++..+....++.... ......|+|.++.. .|+|.|+|.|.|..|. .
T Consensus 7 p~~~~v~~G~~~~l~C~~~G~p~-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~-~D~G~Y~C~A~N~~g~~~ 84 (92)
T cd04977 7 PSQGEISVGESKFFLCQVIGEPK-DISWFSPNGEKLVTQQQISVVQNDDVRSTLTIYNANI-EDAGIYKCVATDAKGTES 84 (92)
T ss_pred cCcEEECCCCeEEEEEEeEeeCC-eEEEECCCCCEeccCCCEEEEeCCCCEEEEEEecCCc-ccCEEEEEEEEcCCCCcc
Confidence 45678999999999999999974 999997 565554434444333 33457899999999 9999999999999754 5
Q ss_pred eEEEEEE
Q psy7039 439 SASCKVY 445 (516)
Q Consensus 439 s~s~~l~ 445 (516)
..++.|.
T Consensus 85 ~~sv~l~ 91 (92)
T cd04977 85 EATVNLK 91 (92)
T ss_pred eeEEEEE
Confidence 6666664
|
Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s |
| >cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs) | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.7e-09 Score=80.89 Aligned_cols=70 Identities=21% Similarity=0.386 Sum_probs=56.8
Q ss_pred EEEEEEEee-ecCCceEEEECCeecCCCCce---EEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEEEE
Q psy7039 373 FTITVPFSG-RPKPTPIWTVNGDEVSPDGRI---KFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCK 443 (516)
Q Consensus 373 ~~l~C~~~g-~p~~~i~W~~~~~~l~~~~~~---~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~ 443 (516)
+.|.|.+.| .|.|.+.|++++..+....+. .+........|.|.++.. .|.|.|+|.|.|..|....++.
T Consensus 1 ~~l~C~~~g~~P~p~~~W~k~g~~l~~~~~~~~~~~~~~~~~~~L~I~~~~~-~D~G~Y~C~a~N~~G~~~~~~~ 74 (75)
T cd05750 1 LVLKCEATSEYPSLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKL-ADSGEYTCVVENILGNDTVTAN 74 (75)
T ss_pred CEEEEEccCCCCCceEEEEcCCeeccccCCcceEEEEecCceEEEEEccCCc-ccCeEEEEEEEEcCCceeEEEe
Confidence 368999999 999999999999888654432 233444567899999999 9999999999999998776654
|
Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv |
| >cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins | Back alignment and domain information |
|---|
Probab=99.01 E-value=5.2e-09 Score=82.73 Aligned_cols=81 Identities=21% Similarity=0.333 Sum_probs=65.3
Q ss_pred ccEEEEcCCeEEEEEEEeeecCC-ceEEEECCeecCCC--CceEEEEc----CCeEEEEEcCceecCC-ceEEEEEEEcC
Q psy7039 363 RDMTVLAGEEFTITVPFSGRPKP-TPIWTVNGDEVSPD--GRIKFETS----ENQTIYRNKSAKRATD-SGSYTIQLVNT 434 (516)
Q Consensus 363 ~~~~v~~g~~~~l~C~~~g~p~~-~i~W~~~~~~l~~~--~~~~~~~~----~~~~~l~i~~~~~~~~-~g~y~c~a~n~ 434 (516)
....+..|+.+.|.|.+.|.|.| .|.|++++..+... .++.+... ...+.|.|.++.. .| .|.|.|.|.|.
T Consensus 9 ~~~~~~~G~~v~L~C~~~g~P~P~~v~W~~~~~~i~~~~~~r~~i~~~~~~~~~~s~L~I~~v~~-~d~~G~Y~C~A~N~ 87 (98)
T cd05758 9 ATQYAILGDKGRVECFIFSTPPPDRIVWTWKENELESGSSGRYTVETDPSPGGVLSTLTISNTQE-SDFQTSYNCTAWNS 87 (98)
T ss_pred CcEEEeCCCcEEEEEEEcccCCCCEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEECCccc-cccceeEEEEEEcC
Confidence 45678999999999999999999 69999999877543 45655443 2235899999998 55 89999999999
Q ss_pred CCceeEEEEE
Q psy7039 435 VGSDSASCKV 444 (516)
Q Consensus 435 ~G~~s~s~~l 444 (516)
.|.....+.|
T Consensus 88 ~G~~~~~~~L 97 (98)
T cd05758 88 FGSGTAIISL 97 (98)
T ss_pred CCcccEEEEe
Confidence 9998776654
|
Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. |
| >cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.6e-09 Score=79.67 Aligned_cols=73 Identities=22% Similarity=0.363 Sum_probs=58.1
Q ss_pred CCeEEEEEEEeeecCCceEEEE-CCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEEEE
Q psy7039 370 GEEFTITVPFSGRPKPTPIWTV-NGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYV 446 (516)
Q Consensus 370 g~~~~l~C~~~g~p~~~i~W~~-~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~v 446 (516)
|+.+.|.|.+.|.|.|.+.|.+ ++..+....++.... ..+|.|..+.. .|.|.|+|.|.|..|..+.++.|.|
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~---~~~L~i~~~~~-~D~G~Y~C~a~N~~G~~~~~~~l~v 74 (74)
T cd05764 1 GQRATLRCKARGDPEPAIHWISPDGKLISNSSRTLVYD---NGTLDILITTV-KDTGSFTCIASNAAGEATATVELHI 74 (74)
T ss_pred CCeEEEEEEccCcCCCEEEEEeCCCEEecCCCeEEEec---CCEEEEEECCh-hhCEEEEEEEECCCCeEEEEEEEEC
Confidence 6789999999999999999997 565554444443322 23689999999 9999999999999999888777754
|
Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. |
| >cd05848 Ig1_Contactin-5 First Ig domain of contactin-5 | Back alignment and domain information |
|---|
Probab=99.00 E-value=3.5e-09 Score=82.77 Aligned_cols=67 Identities=22% Similarity=0.394 Sum_probs=53.9
Q ss_pred cCCeEEEEEEEeeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCc-eecCCceEEEEEEEcCCCce
Q psy7039 369 AGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSA-KRATDSGSYTIQLVNTVGSD 438 (516)
Q Consensus 369 ~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~-~~~~~~g~y~c~a~n~~G~~ 438 (516)
.|+.+.|.|.+.|.|.|.+.|++++..+............ ..|.|.++ .. .|.|.|+|.|.|..|..
T Consensus 18 ~g~~v~l~C~~~G~P~P~i~W~k~g~~l~~~~~~~~~~~~--g~L~i~~~~~~-~D~G~Y~C~A~N~~G~~ 85 (94)
T cd05848 18 DEKKVILNCEARGNPVPTYRWLRNGTEIDTESDYRYSLID--GNLIISNPSEV-KDSGRYQCLATNSIGSI 85 (94)
T ss_pred CCCEEEEEEEeeecCCCEEEEEECCeECccCCCceEEeeC--CeEEEccCCcc-CcCEEEEEEEEcCCCeE
Confidence 4789999999999999999999999988644333333222 36888887 46 89999999999999985
|
Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord. |
| >cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR) | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.1e-09 Score=83.47 Aligned_cols=76 Identities=17% Similarity=0.293 Sum_probs=57.6
Q ss_pred CCeEEEEEEEeeecCCceEEEECC----eecCCC--CceEEEE-------cCCeEEEEEcCceecCCceEEEEEEEcCCC
Q psy7039 370 GEEFTITVPFSGRPKPTPIWTVNG----DEVSPD--GRIKFET-------SENQTIYRNKSAKRATDSGSYTIQLVNTVG 436 (516)
Q Consensus 370 g~~~~l~C~~~g~p~~~i~W~~~~----~~l~~~--~~~~~~~-------~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G 436 (516)
|+.+.|.|.+.|.|.|.|.|++++ ..+... ....... ......|.|.++.. +|.|.|+|.|.|..|
T Consensus 1 G~~v~l~C~v~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~-~D~G~Y~C~A~N~~G 79 (90)
T cd04974 1 GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSF-DDAGEYTCLAGNSIG 79 (90)
T ss_pred CCcEEEEEEEeCCCCCeEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEecccc-ccCcEEEEEeecccC
Confidence 578999999999999999999964 222111 1111111 11234799999999 999999999999999
Q ss_pred ceeEEEEEEE
Q psy7039 437 SDSASCKVYV 446 (516)
Q Consensus 437 ~~s~s~~l~v 446 (516)
....++.|.|
T Consensus 80 ~~~~sa~L~V 89 (90)
T cd04974 80 PSHHSAWLTV 89 (90)
T ss_pred cccCCEEEEe
Confidence 9998988887
|
Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. |
| >cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs) | Back alignment and domain information |
|---|
Probab=98.99 E-value=3e-09 Score=80.23 Aligned_cols=70 Identities=17% Similarity=0.377 Sum_probs=56.2
Q ss_pred ccccEEEEcCCeEEEEEEEeeecCC-ceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCcee
Q psy7039 361 SIRDMTVLAGEEFTITVPFSGRPKP-TPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDS 439 (516)
Q Consensus 361 ~~~~~~v~~g~~~~l~C~~~g~p~~-~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s 439 (516)
.+.++.+..|+.+.|.|.+.|.|.| .|.|.+++..+... . ....+.|.|.++ .|.|.|.|.|.|..|...
T Consensus 4 ~P~~~~v~~G~~v~l~C~a~G~P~P~~I~W~k~g~~l~~~--~----~~~~s~L~i~~~---~d~g~Y~C~A~N~~G~~~ 74 (81)
T cd05749 4 EPEDLSVTANTPFNLTCQAVGPPEPVEILWWQGGSPLGDP--P----APSPSVLNVPGL---NETSKFSCEAHNAKGVTT 74 (81)
T ss_pred CCCceEEcCCCCEEEEEEeeeecCCeEEEEEECCEECCCC--C----CCCCCEEEEccc---cCCeEEEEEEEeccCcEE
Confidence 3566889999999999999999999 79999999887531 1 112346888887 567999999999999743
|
Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c |
| >cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR | Back alignment and domain information |
|---|
Probab=98.99 E-value=3.8e-09 Score=77.21 Aligned_cols=67 Identities=19% Similarity=0.320 Sum_probs=54.2
Q ss_pred CCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEeecCCeeEEEeccCCCCCC
Q psy7039 129 GQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDT 208 (516)
Q Consensus 129 g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~ 208 (516)
|+.+.|.|.+. |.|.|.+.|++++..+....+... ....|.|.+++ |+
T Consensus 1 G~~v~L~C~a~--------------------------G~P~P~v~W~k~g~~l~~~~~~~~----~~~~L~i~~~~--d~ 48 (69)
T cd05739 1 GGSVNLTCVAV--------------------------GAPMPYVKWMKGGEELTKEDEMPV----GRNVLELTNIY--ES 48 (69)
T ss_pred CCeEEEEEEee--------------------------ecCCCEEEEEECCEECCCccceec----CccEEEEeccc--cC
Confidence 67899999999 999999999999988765443322 23479999974 79
Q ss_pred eeEEEEEEcCCCceEEEEE
Q psy7039 209 GHYSLTLENNLGTATASAH 227 (516)
Q Consensus 209 g~Y~c~~~~~~g~~~~~~~ 227 (516)
|.|+|.+.|..|....+..
T Consensus 49 G~Y~C~A~N~~G~~~~~a~ 67 (69)
T cd05739 49 ANYTCVAISSLGMIEATAQ 67 (69)
T ss_pred eeEEEEEEeCCCEEEEEEE
Confidence 9999999999998776653
|
Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR). |
| >cd05848 Ig1_Contactin-5 First Ig domain of contactin-5 | Back alignment and domain information |
|---|
Probab=98.99 E-value=3.7e-09 Score=82.69 Aligned_cols=68 Identities=18% Similarity=0.224 Sum_probs=55.0
Q ss_pred cCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEeecCCeeEEEeccCC-CC
Q psy7039 128 AGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFCS-RS 206 (516)
Q Consensus 128 ~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~ 206 (516)
+|+.+.|.|.+. |.|.+.++|++++..+.......+... ...|.|.++. .+
T Consensus 18 ~g~~v~l~C~~~--------------------------G~P~P~i~W~k~g~~l~~~~~~~~~~~--~g~L~i~~~~~~~ 69 (94)
T cd05848 18 DEKKVILNCEAR--------------------------GNPVPTYRWLRNGTEIDTESDYRYSLI--DGNLIISNPSEVK 69 (94)
T ss_pred CCCEEEEEEEee--------------------------ecCCCEEEEEECCeECccCCCceEEee--CCeEEEccCCccC
Confidence 478999999999 999999999999998865443333222 2478999985 69
Q ss_pred CCeeEEEEEEcCCCceE
Q psy7039 207 DTGHYSLTLENNLGTAT 223 (516)
Q Consensus 207 d~g~Y~c~~~~~~g~~~ 223 (516)
|+|.|.|.+.|..|...
T Consensus 70 D~G~Y~C~A~N~~G~~~ 86 (94)
T cd05848 70 DSGRYQCLATNSIGSIL 86 (94)
T ss_pred cCEEEEEEEEcCCCeEE
Confidence 99999999999998764
|
Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord. |
| >cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins | Back alignment and domain information |
|---|
Probab=98.99 E-value=5e-09 Score=83.24 Aligned_cols=84 Identities=27% Similarity=0.381 Sum_probs=61.8
Q ss_pred cccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCC-----CceEEEEcCCeEEEEEc--CceecCCceEEEEEEEcC
Q psy7039 362 IRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPD-----GRIKFETSENQTIYRNK--SAKRATDSGSYTIQLVNT 434 (516)
Q Consensus 362 ~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~-----~~~~~~~~~~~~~l~i~--~~~~~~~~g~y~c~a~n~ 434 (516)
+.+..+.+|+.+.|.|.+.|.|.|.+.|++++..+... ........+....+.+. .+.. .|.|.|+|.|.|.
T Consensus 8 p~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~D~G~Y~C~a~N~ 86 (100)
T cd07693 8 PSDLIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGR-SDEGVYVCVAHNS 86 (100)
T ss_pred CceeEEcCCCeEEEEeeCCcCCCCEEEEEECCEECccccCCCCcceEEecCCcEEEEEeeccCCCc-CcCEEEEEEEEcc
Confidence 45678899999999999999999999999999887541 12222222222233332 2357 9999999999999
Q ss_pred CCc-eeEEEEEEE
Q psy7039 435 VGS-DSASCKVYV 446 (516)
Q Consensus 435 ~G~-~s~s~~l~v 446 (516)
.|. .+..+.|.|
T Consensus 87 ~G~~~s~~~~l~v 99 (100)
T cd07693 87 LGEAVSRNASLEV 99 (100)
T ss_pred ccceecceEEEEe
Confidence 999 666777765
|
Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res |
| >cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1) | Back alignment and domain information |
|---|
Probab=98.99 E-value=3.3e-09 Score=80.85 Aligned_cols=77 Identities=17% Similarity=0.251 Sum_probs=61.9
Q ss_pred eEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEeecCCeeEEEeccC
Q psy7039 124 VKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFC 203 (516)
Q Consensus 124 ~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~ 203 (516)
+.+..|+.+.|.|.+. +.|.+.+.|++++..+....... .......|.|.++
T Consensus 4 ~~~~~G~~v~L~C~~~--------------------------g~p~p~i~W~k~~~~~~~~~~~~--~~~~~~~L~i~~v 55 (82)
T cd05856 4 IARPVGSSVRLKCVAS--------------------------GNPRPDITWLKDNKPLTPTEIGE--SRKKKWTLSLKNL 55 (82)
T ss_pred eeccCCCeEEEEEEee--------------------------EeCCCcEEEEECCcCCcCCccce--ecCceEEEEEccC
Confidence 4567799999999999 89999999999988775443222 2234568999999
Q ss_pred CCCCCeeEEEEEEcCCCceEEEEEe
Q psy7039 204 SRSDTGHYSLTLENNLGTATASAHV 228 (516)
Q Consensus 204 ~~~d~g~Y~c~~~~~~g~~~~~~~~ 228 (516)
+.+|+|.|+|.+.|..|.......+
T Consensus 56 ~~~D~G~Y~C~a~N~~G~~~~~~~v 80 (82)
T cd05856 56 KPEDSGKYTCHVSNRAGEINATYKV 80 (82)
T ss_pred ChhhCEEEEEEEEcCCccEEEEEEE
Confidence 9999999999999999987665543
|
Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors. |
| >KOG3515|consensus | Back alignment and domain information |
|---|
Probab=98.99 E-value=3.8e-08 Score=101.70 Aligned_cols=355 Identities=14% Similarity=0.012 Sum_probs=210.5
Q ss_pred cEEEeCCCcCCCeEEEEEEEecCCCCCCCCCCCcceEeccCCCCCccccCcccceEEecCCeEEEEEeeeeccccccCcc
Q psy7039 70 TSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPL 149 (516)
Q Consensus 70 ~~~~i~~l~~~~~y~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~ 149 (516)
..+.+......+.+.|+|.|-+....... ..........+|.+.......+...+++.........+
T Consensus 361 ~~~~~q~~~~~~~g~v~c~a~~~~~~~~s----ss~~~l~~l~~p~~L~~~~~~v~~~e~d~~~~~~~~~~--------- 427 (741)
T KOG3515|consen 361 ISHYAQPSSQQDGGQVTCPADNLELAHSS----SSSFLLPVLPSPAFLVRHKTAVVAMEQDHQAAPLPVRG--------- 427 (741)
T ss_pred EEeeecccchhcCceEEcccccccccccc----ccceeccccCCchhhhhcccceeeccCccccccCcccC---------
Confidence 44555566788999999999776532221 11222223345554434444455555555444333330
Q ss_pred ccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEEee
Q psy7039 150 RALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVT 229 (516)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~~ 229 (516)
..+...+.|.+.+..+....+-.++.......+.+.++.+.|.|.|.|.+.|..|.........
T Consensus 428 ----------------~p~~~~~~w~~~~~~~~~~~g~~~~v~~~~~~~s~~~v~~~d~g~y~~tatns~gg~~~~~~~~ 491 (741)
T KOG3515|consen 428 ----------------APAERTFYWTFRLYKLSQVDGGVVRVGAGAGLGSGVNVSRSDGGSYGLTATNSPGGAQAYLLLG 491 (741)
T ss_pred ----------------CCcccchhheecceecccccCceEEeeccccccccceeeeccCCcceeeeccCCCceeeEEeec
Confidence 3455689999988888765554444334444555777999999999999999999887665422
Q ss_pred cee------e-eeccccCCceEEEEEEEEccCCCCCceecccccccc-------eEEEEEecceeeEEEccCCCCCceEE
Q psy7039 230 GTE------F-TDNNVHEGKAYEYRVSAVNAAGTEKPKISLDALIGK-------RIKEFVTSTTASLNIKNSVRKDSGIY 295 (516)
Q Consensus 230 ~~~------~-~~~~l~~g~~~~~~~~~~~~~g~p~p~i~W~~~~~~-------~~~~~~~~~~~~l~i~~l~~~d~g~y 295 (516)
... . ......++......|..-. .+...-.+.|.+.... ............+.+........+.|
T Consensus 492 ~~~sp~~~~~~~~~~~~~~ns~~~~~~q~~-~~~~~~m~~~~r~ge~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 570 (741)
T KOG3515|consen 492 VHTSPHNHHLQDQVEGATGNSVDGECMQDE-QPQDQQMHHEPRSGEPPSDQIDQDAPQQQLMAHAQLLVSGNSSLQASET 570 (741)
T ss_pred cccCCcccccccccccCCCCcccceeeccc-cccchhhhcccccCCCCcccccccccccccCCccceeecccccccccce
Confidence 111 1 1122234555566666521 1112233556542111 11111233455666666777778999
Q ss_pred EEEEEecCCCcceeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcC-CeEE
Q psy7039 296 KIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAG-EEFT 374 (516)
Q Consensus 296 ~c~a~n~~g~~~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g-~~~~ 374 (516)
.|.+.+....+.....+.+...+.....+ +..+...+| -.+.
T Consensus 571 ~~~~d~~~~pA~~~~~l~~~s~~~v~~~t-------------------------------------p~~~~~~~g~v~as 613 (741)
T KOG3515|consen 571 ACVVDGSSPPAGLSLVLKAYSALIVTVRT-------------------------------------PNMYTAQEGCVNAS 613 (741)
T ss_pred EEeecCCCCccccceEEEecccccccccC-------------------------------------CceeeeccCccccc
Confidence 99998833233444445544443321110 000111111 2778
Q ss_pred EEEEEeeecCCceEEEECCeecCCCCceEEEE-cC---CeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEEEEecCC
Q psy7039 375 ITVPFSGRPKPTPIWTVNGDEVSPDGRIKFET-SE---NQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKP 450 (516)
Q Consensus 375 l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~-~~---~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~v~~~p 450 (516)
..|.+.+.+...+.|.+.......+.++.... .. ...+..|-+... ...|...|.+.|..|....+..+.--+.+
T Consensus 614 ~~~~a~~~~~~~~~~~k~p~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~-~~~y~~~c~t~n~lg~~~v~~~~~~~t~~ 692 (741)
T KOG3515|consen 614 DDCVASGVPSTSFTTAKTPLQTTEGPHIREKATQQGQTHSSSEWILNHID-GSDYENGCTTQNLLGSDHVSGAIHSGTAS 692 (741)
T ss_pred ccceecccccceeecccCCCcccCCceEEEeeeeccccccccccccCCcc-hhhhcceeeecccCCCccccceecCCcCC
Confidence 89988999999999999876543333322211 11 112233333334 45555999999999998887777666777
Q ss_pred CCCCCCcccccccCCeEEEEeeCCCCCCCCCcceEEEEEEecCCC
Q psy7039 451 SPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATG 495 (516)
Q Consensus 451 ~~P~~~l~~~~~~~~~~~l~W~~p~~~~~~~i~~Y~v~~~~~~~~ 495 (516)
..| .++.+..++...+.|.|.| .+|++. ...|.++|++.+..
T Consensus 693 ~~~-~n~~~~~~~~~~i~l~~~p-~fdgg~-~q~f~~~~~~~~~~ 734 (741)
T KOG3515|consen 693 VGP-INLTYDNLTYSTISLEWMP-GFDGGL-QQRFFLKYYDLGTM 734 (741)
T ss_pred CCc-cceEeeeeeeeeeceeeee-cccccc-ccceeeehhhcCCc
Confidence 877 8999999999999999995 567766 56699999887654
|
|
| >cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.3e-09 Score=81.56 Aligned_cols=75 Identities=24% Similarity=0.306 Sum_probs=56.4
Q ss_pred CCeEEEEEEEeeecCCceEEEECCe---e--cCCCCce-EEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEEEE
Q psy7039 370 GEEFTITVPFSGRPKPTPIWTVNGD---E--VSPDGRI-KFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCK 443 (516)
Q Consensus 370 g~~~~l~C~~~g~p~~~i~W~~~~~---~--l~~~~~~-~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~ 443 (516)
|+.+.|.|.+.|.|.|.+.|++++. . +...... .+.. .....|.|.++.. .|+|.|.|.|.|..|.....+.
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~-~~~~~L~I~~~~~-~D~G~Y~C~a~N~~G~~~~~~~ 78 (81)
T cd05765 1 GETASFHCDVTGRPPPEITWEKQVHGKENLIMRPNHVRGNVVV-TNIGQLVIYNAQP-QDAGLYTCTARNSGGLLRANFP 78 (81)
T ss_pred CCcEEEEeeccccCCCcEEEEecCCCCcceeecCCcccCCEEE-ccccEEEEccCCc-ccCEEEEEEEecCCceEEEEEE
Confidence 6789999999999999999999742 1 1111100 1111 1235799999999 9999999999999999888887
Q ss_pred EEE
Q psy7039 444 VYV 446 (516)
Q Consensus 444 l~v 446 (516)
|.|
T Consensus 79 l~v 81 (81)
T cd05765 79 LSV 81 (81)
T ss_pred EeC
Confidence 764
|
Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. |
| >cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin | Back alignment and domain information |
|---|
Probab=98.98 E-value=8.1e-09 Score=83.10 Aligned_cols=77 Identities=19% Similarity=0.274 Sum_probs=60.7
Q ss_pred cCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeecc-CCceEEee--c--CCeeEEEecc
Q psy7039 128 AGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQI-GGRADVQT--T--KSETVLDIPF 202 (516)
Q Consensus 128 ~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~-~~~~~~~~--~--~~~~~l~i~~ 202 (516)
.|..+.|.|.+. |.|.+.+.|++++..+.. +.++.... . ...+.|.|.+
T Consensus 22 ~g~~v~L~C~a~--------------------------G~P~p~i~W~k~g~~l~~~~~r~~~~~~~~~~~~~s~L~I~~ 75 (109)
T cd05773 22 GSSDANLVCQAQ--------------------------GVPRVQFRWAKNGVPLDLGNPRYEETTEHTGTVHTSILTIIN 75 (109)
T ss_pred CCCEEEEEEECc--------------------------ccCCCEEEEEECCEECCCCCCeEEEEeeccCccceeEEEECc
Confidence 457899999999 999999999999988864 34554331 1 1246899999
Q ss_pred CC-CCCCeeEEEEEEcCCCceEEEEEeec
Q psy7039 203 CS-RSDTGHYSLTLENNLGTATASAHVTG 230 (516)
Q Consensus 203 ~~-~~d~g~Y~c~~~~~~g~~~~~~~~~~ 230 (516)
+. .+|.|.|+|.|.|..|.....+.+.+
T Consensus 76 v~~~~D~G~Y~C~A~N~~G~~~~~i~L~~ 104 (109)
T cd05773 76 VSAALDYALFTCTAHNSLGEDSLDIQLVS 104 (109)
T ss_pred CCccCCCEEEEEEEEeCCccCcEEEEEEe
Confidence 98 59999999999999998876665443
|
Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p |
| >cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2) | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.1e-09 Score=78.59 Aligned_cols=57 Identities=21% Similarity=0.303 Sum_probs=47.2
Q ss_pred CcCceeeEEeeCCeeeccCCceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEE
Q psy7039 166 SEPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAH 227 (516)
Q Consensus 166 ~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~ 227 (516)
|.|.|.+.|++++..+....++ . ....|.|.++..+|+|.|+|.+.|..|..+....
T Consensus 9 G~P~P~v~W~k~g~~l~~~~~~--~---~~~~L~I~~v~~~D~G~YtC~a~N~~G~~~~~~t 65 (70)
T cd05864 9 GYPPPEVKWYKNGQLIVLNHTF--K---RGVHLTIYEVTEKDAGNYTVVLTNPITKEEQRHT 65 (70)
T ss_pred EeCCCEEEEEECCEECCCCCEE--c---cCCEEEECcCCHHHCEEEEEEEEECCCceeeEEE
Confidence 9999999999999998754332 1 2357999999999999999999999998766544
|
Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells. |
| >cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.2e-09 Score=83.75 Aligned_cols=81 Identities=22% Similarity=0.260 Sum_probs=63.6
Q ss_pred ccEEEEcCCeEEEEEEEee-----ecCCceEEEECCeecCCC--CceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCC
Q psy7039 363 RDMTVLAGEEFTITVPFSG-----RPKPTPIWTVNGDEVSPD--GRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTV 435 (516)
Q Consensus 363 ~~~~v~~g~~~~l~C~~~g-----~p~~~i~W~~~~~~l~~~--~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~ 435 (516)
.+..+.+|+.+.|.|.+.+ .|.+.|.|++++..+... ....+.. ....|.|..+.. +|+|.|.|.+.|..
T Consensus 7 ~~~~v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~~~~~~~~~~~~~r~~~--~~~~L~I~~~~~-~DsG~Y~C~~~N~~ 83 (94)
T cd05756 7 KKSYVLEGEPVVIKCPLFYSYIAQSPGLNLTWYKSDGKTPIPTEERSRMHQ--QKDLLWFLPAAL-EDSGLYTCVVRNST 83 (94)
T ss_pred eEEEEecCCCeEEECCCCCcccccCCCceEEEEEcCCCCcccccccceeee--cCCeEEEccCCc-ccCeEEEEEEcCCC
Confidence 4567889999999999998 688899999998654321 1122222 234799999999 99999999999999
Q ss_pred CceeEEEEEEE
Q psy7039 436 GSDSASCKVYV 446 (516)
Q Consensus 436 G~~s~s~~l~v 446 (516)
|....++.|+|
T Consensus 84 g~~~~~~~L~v 94 (94)
T cd05756 84 YCMKVSISLTV 94 (94)
T ss_pred ccEEEEEEEEC
Confidence 99888887764
|
Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. |
| >cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR) | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.7e-09 Score=78.66 Aligned_cols=59 Identities=24% Similarity=0.339 Sum_probs=48.6
Q ss_pred CcCceeeEEeeCCeeeccCCceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEEe
Q psy7039 166 SEPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHV 228 (516)
Q Consensus 166 ~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~ 228 (516)
|.|.+.+.|++++..+....++. .....|.|.+++.+|+|.|+|.+.|..|....+..+
T Consensus 9 g~P~p~v~W~k~g~~l~~~~~~~----~~~~~L~I~~v~~~D~G~YtC~a~N~~g~~~~~~~~ 67 (71)
T cd04976 9 AYPPPEIQWYKNGKLISEKNRTK----KSGHSLTIKDVTEEDAGNYTVVLTNKQAKLEKRLTF 67 (71)
T ss_pred EeCCCEEEEEECCEECCCCCEEE----cCCCEEEECcCCHHHCEEEEEEEEcCCccEEEEEEE
Confidence 99999999999999887654432 234689999999999999999999999887665543
|
Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa |
| >cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.6e-09 Score=83.30 Aligned_cols=78 Identities=18% Similarity=0.230 Sum_probs=60.3
Q ss_pred ceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecC-----cCceeeEEeeCCeeeccC--CceEEeecCCe
Q psy7039 123 DVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLS-----EPFLNHGWSINGQVCQIG--GRADVQTTKSE 195 (516)
Q Consensus 123 ~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~p~~~i~W~~~~~~~~~~--~~~~~~~~~~~ 195 (516)
...+.+|+++.|.|.+. + .|.+.+.|++++..+... .+.++.. ..
T Consensus 8 ~~~v~~G~~~~L~C~~~--------------------------g~~~~~~p~~~v~Wyk~~~~~~~~~~~~~r~~~--~~ 59 (94)
T cd05756 8 KSYVLEGEPVVIKCPLF--------------------------YSYIAQSPGLNLTWYKSDGKTPIPTEERSRMHQ--QK 59 (94)
T ss_pred EEEEecCCCeEEECCCC--------------------------CcccccCCCceEEEEEcCCCCcccccccceeee--cC
Confidence 45677999999999999 6 688899999988654321 1222322 23
Q ss_pred eEEEeccCCCCCCeeEEEEEEcCCCceEEEEEe
Q psy7039 196 TVLDIPFCSRSDTGHYSLTLENNLGTATASAHV 228 (516)
Q Consensus 196 ~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~ 228 (516)
..|.|.++..+|+|.|.|.++|..|.....+.+
T Consensus 60 ~~L~I~~~~~~DsG~Y~C~~~N~~g~~~~~~~L 92 (94)
T cd05756 60 DLLWFLPAALEDSGLYTCVVRNSTYCMKVSISL 92 (94)
T ss_pred CeEEEccCCcccCeEEEEEEcCCCccEEEEEEE
Confidence 589999999999999999999999887766543
|
Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. |
| >KOG3515|consensus | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.5e-08 Score=104.51 Aligned_cols=404 Identities=14% Similarity=0.100 Sum_probs=213.4
Q ss_pred EEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCC--Ce--------EEeEEeecCCcEEEeCCCcCCCeEEEEEEEe
Q psy7039 21 EATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTG--NW--------EKAVVVPAGETSCTVPGLIEGETYQFQVRAV 90 (516)
Q Consensus 21 ~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~--~~--------~~~~~~~~~~~~~~i~~l~~~~~y~~~~~a~ 90 (516)
.........+.+.|.. ..++.+...|+........ .| ............+.+...+.++.+.|+|.|.
T Consensus 106 e~~~~~~~vvqi~c~~--~~~~~P~~nlrW~~n~r~e~~~~~~~~~~~~~a~gss~t~~s~l~~~v~Rka~~g~~tC~A~ 183 (741)
T KOG3515|consen 106 EIFQVDKGVVQIICSA--KVAGRPNPNLRWGFNNRAELNAVNQRGRVGAGALGSSYTEPSLLKQTVSRKADNGNYTCPAN 183 (741)
T ss_pred chhhhcCCeEEEEEee--cCCCCCCcceeeeeccEEeecccCCcccccccccCceeccccceeeEEEEecCCceeEcccc
Confidence 3344567789999955 2333444444432211000 11 0000010234456777777899999999998
Q ss_pred cCCCCCCCCCCCcceEeccCCCCCccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCce
Q psy7039 91 NAAGPGEASKPTAPIVAKPKNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFL 170 (516)
Q Consensus 91 n~~g~~~~s~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 170 (516)
|.............+.+........+. .....-...+|+.+.|.|.+.+ ++|.+
T Consensus 184 nr~s~~l~~~~~~~i~v~~~~~~~~~~-~~~~~qsF~~g~~inlvc~~~g-------------------------g~P~~ 237 (741)
T KOG3515|consen 184 NRNSPGLSFAKQLTIIVEAPCKGIGIT-GAQEQQSFTEGQTINLVCNAQG-------------------------GNPSQ 237 (741)
T ss_pred cccCccccccceeEeecccccccceec-chhhcCcccccceEEEEehhhc-------------------------CCcch
Confidence 854444434444445554443444333 2222356789999999997774 78999
Q ss_pred eeEEeeCCeeeccCCceEEeecC--CeeEEEeccCCCCCCeeEEEEEEcCCCceEEE--EEeece----eeeeccccCCc
Q psy7039 171 NHGWSINGQVCQIGGRADVQTTK--SETVLDIPFCSRSDTGHYSLTLENNLGTATAS--AHVTGT----EFTDNNVHEGK 242 (516)
Q Consensus 171 ~i~W~~~~~~~~~~~~~~~~~~~--~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~--~~~~~~----~~~~~~l~~g~ 242 (516)
.++|+++...........-...+ ....+.+..-...+.-...|.+.| ....... ...... ......+..|+
T Consensus 238 ~~~w~~~s~~~~~~sl~~~~~sg~~v~~~~~~~~~r~~~~~~~kc~a~n-~~~~~~~tav~~~~~~~~Ist~~~~ls~g~ 316 (741)
T KOG3515|consen 238 QQTWYKDSRPQSESSLLSQEPSGDTVSSTLVLRVGRQDLQAQLKCKASN-LLAASQITAVQVKPTAVPISTSDSGLSSGR 316 (741)
T ss_pred hhhhccccccchhhhcccCCCCCCcccccccccccccchhhhhhccccC-ccccceeeecccccccccccCccccccccc
Confidence 99999988877654222111111 122333333334444557799987 2221111 111111 11334477788
Q ss_pred eEEEEEEEEccCCCCCceecccccccceE-------EEEE--ecceeeEEEccCCCCCceEEEEEEEecCCCcceeEEEE
Q psy7039 243 AYEYRVSAVNAAGTEKPKISLDALIGKRI-------KEFV--TSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVV 313 (516)
Q Consensus 243 ~~~~~~~~~~~~g~p~p~i~W~~~~~~~~-------~~~~--~~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~~~~l~ 313 (516)
.+.+.|.. ..+.|.+.+.|........ .... ......+.+......+.|.|+|.+.+.......+....
T Consensus 317 s~r~~c~~--sss~p~~~i~w~~~~~~~~~~~~~~~~t~~~~~v~~~~~~~q~~~~~~~g~v~c~a~~~~~~~~sss~~~ 394 (741)
T KOG3515|consen 317 SARSSCVS--SSSKPPAHIAWYKDTKMPKGSQKASSKTSNMGGVAVISHYAQPSSQQDGGQVTCPADNLELAHSSSSSFL 394 (741)
T ss_pred ccccceec--cCCCCccceeeeccCcccccccCcccCCCcccceeeEEeeecccchhcCceEEcccccccccccccccee
Confidence 88888876 3566778888865110000 0000 11122344556777899999999998775544333333
Q ss_pred EecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeeecC-CceEEEEC
Q psy7039 314 VVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPK-PTPIWTVN 392 (516)
Q Consensus 314 v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~-~~i~W~~~ 392 (516)
+...+.+.. |. . ........+.+.......+.++|. +.+.|.+.
T Consensus 395 l~~l~~p~~--L~-~--------------------------------~~~~v~~~e~d~~~~~~~~~~~p~~~~~~w~~~ 439 (741)
T KOG3515|consen 395 LPVLPSPAF--LV-R--------------------------------HKTAVVAMEQDHQAAPLPVRGAPAERTFYWTFR 439 (741)
T ss_pred ccccCCchh--hh-h--------------------------------cccceeeccCccccccCcccCCCcccchhheec
Confidence 322222210 00 0 001111222222222223335544 48999999
Q ss_pred CeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEEEEecCCCCCCCCcccccccCCeEEEEee
Q psy7039 393 GDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQGPLDVSDITPESCSLSWK 472 (516)
Q Consensus 393 ~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~v~~~p~~P~~~l~~~~~~~~~~~l~W~ 472 (516)
+.++.....-....-.......+.++.. .|.|.|.|.|.|..|.......+.+...|..-.....+..-++++ .+.|-
T Consensus 440 ~~~~~~~~g~~~~v~~~~~~~s~~~v~~-~d~g~y~~tatns~gg~~~~~~~~~~~sp~~~~~~~~~~~~~~ns-~~~~~ 517 (741)
T KOG3515|consen 440 LYKLSQVDGGVVRVGAGAGLGSGVNVSR-SDGGSYGLTATNSPGGAQAYLLLGVHTSPHNHHLQDQVEGATGNS-VDGEC 517 (741)
T ss_pred ceecccccCceEEeeccccccccceeee-ccCCcceeeeccCCCceeeEEeeccccCCcccccccccccCCCCc-cccee
Confidence 8887654432222222222344556888 999999999999999887776666655443321222344445566 55565
Q ss_pred CCCCCCCCCcceEEEEEEecCC
Q psy7039 473 PPLDDGGSPITNYVVEKYESAT 494 (516)
Q Consensus 473 ~p~~~~~~~i~~Y~v~~~~~~~ 494 (516)
.. +....-..|+-+.|..+.
T Consensus 518 ~q--~~~~~~~~m~~~~r~ge~ 537 (741)
T KOG3515|consen 518 MQ--DEQPQDQQMHHEPRSGEP 537 (741)
T ss_pred ec--cccccchhhhcccccCCC
Confidence 32 223334445555554433
|
|
| >cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins | Back alignment and domain information |
|---|
Probab=98.96 E-value=9.2e-09 Score=80.09 Aligned_cols=74 Identities=23% Similarity=0.280 Sum_probs=58.6
Q ss_pred ccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEee-CCeeeccCCceEEee-cCCeeEE
Q psy7039 121 LNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSI-NGQVCQIGGRADVQT-TKSETVL 198 (516)
Q Consensus 121 ~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~-~~~~~~~~~~~~~~~-~~~~~~l 198 (516)
+..+.+..|+.+.|.|.+. |.|. .+.|++ ++..+....++.+.. ....++|
T Consensus 7 p~~~~v~~G~~~~l~C~~~--------------------------G~p~-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L 59 (92)
T cd04977 7 PSQGEISVGESKFFLCQVI--------------------------GEPK-DISWFSPNGEKLVTQQQISVVQNDDVRSTL 59 (92)
T ss_pred cCcEEECCCCeEEEEEEeE--------------------------eeCC-eEEEECCCCCEeccCCCEEEEeCCCCEEEE
Confidence 4457789999999999999 8875 999997 565565545544433 3456799
Q ss_pred EeccCCCCCCeeEEEEEEcCCCc
Q psy7039 199 DIPFCSRSDTGHYSLTLENNLGT 221 (516)
Q Consensus 199 ~i~~~~~~d~g~Y~c~~~~~~g~ 221 (516)
.|.+++.+|+|.|+|.+.|..|.
T Consensus 60 ~I~~v~~~D~G~Y~C~A~N~~g~ 82 (92)
T cd04977 60 TIYNANIEDAGIYKCVATDAKGT 82 (92)
T ss_pred EEecCCcccCEEEEEEEEcCCCC
Confidence 99999999999999999998654
|
Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s |
| >cd05850 Ig1_Contactin-2 First Ig domain of contactin-2 | Back alignment and domain information |
|---|
Probab=98.96 E-value=6.7e-09 Score=81.23 Aligned_cols=78 Identities=17% Similarity=0.244 Sum_probs=58.4
Q ss_pred CcccceEEecC---CeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEeecCCe
Q psy7039 119 STLNDVKIKAG---QSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTTKSE 195 (516)
Q Consensus 119 ~~~~~~~v~~g---~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~ 195 (516)
..+..+.+.+| +.+.|.|.+. |.|.+.++|++++..+.......+... .
T Consensus 6 ~~P~~~~~~~~~~g~~v~l~C~a~--------------------------g~P~p~i~W~~~g~~l~~~~~~~~~~~--~ 57 (94)
T cd05850 6 EQPSSLLFPEGSPEEKVTLGCRAR--------------------------ASPPATYRWKMNGTEIKFAPESRYTLV--A 57 (94)
T ss_pred ECCCCEEecCCCCCCeEEEEeEce--------------------------eCCCCEEEEEECCEECccCCCceEEEE--C
Confidence 34455555555 6899999999 999999999999998864322222222 3
Q ss_pred eEEEeccCC-CCCCeeEEEEEEcCCCceEE
Q psy7039 196 TVLDIPFCS-RSDTGHYSLTLENNLGTATA 224 (516)
Q Consensus 196 ~~l~i~~~~-~~d~g~Y~c~~~~~~g~~~~ 224 (516)
..|.|.++. ..|+|.|.|.+.|..|....
T Consensus 58 g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s 87 (94)
T cd05850 58 GNLVINNPQKARDAGSYQCLAINRCGTVVS 87 (94)
T ss_pred CeEEEccCCccCcCEEEEEEEEcCcCcEEE
Confidence 478998865 59999999999999997654
|
Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c |
| >cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs) | Back alignment and domain information |
|---|
Probab=98.96 E-value=4e-09 Score=78.83 Aligned_cols=61 Identities=28% Similarity=0.448 Sum_probs=49.9
Q ss_pred C-cCceeeEEeeCCeeeccCCceE---EeecCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEE
Q psy7039 166 S-EPFLNHGWSINGQVCQIGGRAD---VQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASA 226 (516)
Q Consensus 166 ~-~p~~~i~W~~~~~~~~~~~~~~---~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~ 226 (516)
| .|.+.+.|++++..+....+.. +........|.|.+++.+|.|.|+|.+.|..|....+.
T Consensus 9 g~~P~p~~~W~k~g~~l~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~ 73 (75)
T cd05750 9 SEYPSLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVENILGNDTVTA 73 (75)
T ss_pred CCCCCceEEEEcCCeeccccCCcceEEEEecCceEEEEEccCCcccCeEEEEEEEEcCCceeEEE
Confidence 8 8999999999998887554332 43445568999999999999999999999999876554
|
Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv |
| >cd05850 Ig1_Contactin-2 First Ig domain of contactin-2 | Back alignment and domain information |
|---|
Probab=98.96 E-value=9.8e-09 Score=80.30 Aligned_cols=77 Identities=22% Similarity=0.336 Sum_probs=56.9
Q ss_pred ccEEEEcC---CeEEEEEEEeeecCCceEEEECCeecCCCC--ceEEEEcCCeEEEEEcCce-ecCCceEEEEEEEcCCC
Q psy7039 363 RDMTVLAG---EEFTITVPFSGRPKPTPIWTVNGDEVSPDG--RIKFETSENQTIYRNKSAK-RATDSGSYTIQLVNTVG 436 (516)
Q Consensus 363 ~~~~v~~g---~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~--~~~~~~~~~~~~l~i~~~~-~~~~~g~y~c~a~n~~G 436 (516)
.+..+.+| +.+.|.|.+.|.|.|.+.|++++..+.... ++.+. . ..|.|.++. . .|.|.|.|.|.|..|
T Consensus 9 ~~~~~~~~~~g~~v~l~C~a~g~P~p~i~W~~~g~~l~~~~~~~~~~~--~--g~L~I~~~~~~-~D~G~Y~C~A~N~~G 83 (94)
T cd05850 9 SSLLFPEGSPEEKVTLGCRARASPPATYRWKMNGTEIKFAPESRYTLV--A--GNLVINNPQKA-RDAGSYQCLAINRCG 83 (94)
T ss_pred CCEEecCCCCCCeEEEEeEceeCCCCEEEEEECCEECccCCCceEEEE--C--CeEEEccCCcc-CcCEEEEEEEEcCcC
Confidence 34444444 689999999999999999999998885332 33332 2 358887754 6 899999999999999
Q ss_pred ce-eEEEEE
Q psy7039 437 SD-SASCKV 444 (516)
Q Consensus 437 ~~-s~s~~l 444 (516)
.. +..+.|
T Consensus 84 ~~~s~~a~l 92 (94)
T cd05850 84 TVVSREANL 92 (94)
T ss_pred cEEEEEEEE
Confidence 85 444444
|
Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c |
| >cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins | Back alignment and domain information |
|---|
Probab=98.95 E-value=5.4e-09 Score=82.13 Aligned_cols=81 Identities=21% Similarity=0.288 Sum_probs=61.5
Q ss_pred cccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCc--eEEEEcCCeEEEEEcCc-----eecCCceEEEEEEEcC
Q psy7039 362 IRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGR--IKFETSENQTIYRNKSA-----KRATDSGSYTIQLVNT 434 (516)
Q Consensus 362 ~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~--~~~~~~~~~~~l~i~~~-----~~~~~~g~y~c~a~n~ 434 (516)
+.+..+..|+++.|.|.+.|.|.|.+.|++++..+..... +.... + ..+.|.++ .. .|.|.|.|.|.|.
T Consensus 6 P~~~~~~~g~~v~l~C~v~g~P~p~i~W~k~g~~l~~~~~~~~~~~~--~-~~l~i~~v~~~~~~~-~D~G~Y~C~a~N~ 81 (95)
T cd05722 6 PSDIVAVRGGPVVLNCSAEGEPPPKIEWKKDGVLLNLVSDERRQQLP--N-GSLLITSVVHSKHNK-PDEGFYQCVAQND 81 (95)
T ss_pred CCCeEEcCCCCEEEeeecccCCCCEEEEEECCeECccccCcceEEcc--C-CeEEEeeeeccCCCC-CcCEEEEEEEECC
Confidence 4556788999999999999999999999999988865433 22221 2 24556655 46 8999999999999
Q ss_pred -CCce-eEEEEEEE
Q psy7039 435 -VGSD-SASCKVYV 446 (516)
Q Consensus 435 -~G~~-s~s~~l~v 446 (516)
.|.. +..+.|+|
T Consensus 82 ~~G~~~s~~~~l~v 95 (95)
T cd05722 82 SLGSIVSRTARLTV 95 (95)
T ss_pred ccCcEEEeeeEEeC
Confidence 9985 55666653
|
Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain. |
| >cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule) | Back alignment and domain information |
|---|
Probab=98.95 E-value=4.1e-09 Score=78.94 Aligned_cols=68 Identities=22% Similarity=0.297 Sum_probs=49.0
Q ss_pred EEEEEEEeeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceec---CCceEEEEEEEcCCCceeE
Q psy7039 373 FTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRA---TDSGSYTIQLVNTVGSDSA 440 (516)
Q Consensus 373 ~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~---~~~g~y~c~a~n~~G~~s~ 440 (516)
+.|.|.+.|.|.|.+.|++++..+..............+.|.|..+... .|.|.|+|.|.|..|....
T Consensus 1 ~~l~C~a~G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s 71 (77)
T cd05874 1 IVIQCEAKGKPPPSFSWTRNGTHFDIDKDPKVTMKPNTGTLVINIMNGEKAEAYEGVYQCTARNERGAAVS 71 (77)
T ss_pred CEEEeeCcccCCCeEEEEECCeECCCcCCCCEEEeCCCceEEEeccccCCCCCCCEEEEEEEEcCCCeEEe
Confidence 3689999999999999999998774332222222233346778776541 3789999999999998543
|
Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system. |
| >cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2 | Back alignment and domain information |
|---|
Probab=98.94 E-value=9.9e-09 Score=78.52 Aligned_cols=74 Identities=19% Similarity=0.334 Sum_probs=57.5
Q ss_pred CeEEEEEeeeeccccccCccccccccccCccceeecCcCce--eeEEeeCCeeeccC---CceE-EeecCCeeEEEeccC
Q psy7039 130 QSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFL--NHGWSINGQVCQIG---GRAD-VQTTKSETVLDIPFC 203 (516)
Q Consensus 130 ~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~i~W~~~~~~~~~~---~~~~-~~~~~~~~~l~i~~~ 203 (516)
+.+.|.|.+. |.|.+ .+.|++++..+... .++. +......++|.|.++
T Consensus 1 ~~~~L~C~a~--------------------------g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v 54 (85)
T cd05854 1 ENLTLQCHAS--------------------------HDPTMDLTFTWSLDDFPIDLDKPNGHYRRMEVKETIGDLVIVNA 54 (85)
T ss_pred CcEEEEEEEe--------------------------cCCCCCeEEEEEECCeEccccCCCCcEEEEEecceEeEEEEccC
Confidence 3578999999 88876 68999999887542 2332 222234579999999
Q ss_pred CCCCCeeEEEEEEcCCCceEEEEEee
Q psy7039 204 SRSDTGHYSLTLENNLGTATASAHVT 229 (516)
Q Consensus 204 ~~~d~g~Y~c~~~~~~g~~~~~~~~~ 229 (516)
+..|+|.|+|.+.|..|...++..+.
T Consensus 55 ~~~D~G~YtC~A~n~~g~~~~~~~L~ 80 (85)
T cd05854 55 QLSHAGTYTCTAQTVVDSASASATLV 80 (85)
T ss_pred ChhhCeEEEEEEecCCCCEEEEEEEE
Confidence 99999999999999999887776544
|
Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c |
| >cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily | Back alignment and domain information |
|---|
Probab=98.93 E-value=4.4e-09 Score=78.57 Aligned_cols=61 Identities=28% Similarity=0.336 Sum_probs=46.5
Q ss_pred CcCceeeEEeeCCeeecc---CCceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEEe
Q psy7039 166 SEPFLNHGWSINGQVCQI---GGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHV 228 (516)
Q Consensus 166 ~~p~~~i~W~~~~~~~~~---~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~ 228 (516)
|.|.|.++|++++..... ..++.+ ......|.|.+++.+|+|.|.|.+.|..|.......+
T Consensus 9 G~P~P~v~W~k~~~~~~~~~~~~~~~~--~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~~~l 72 (75)
T cd05763 9 GHPTPQIAWQKDGGTDFPAARERRMHV--MPEDDVFFIVDVKIEDTGVYSCTAQNTAGSISANATL 72 (75)
T ss_pred cccCCEEEEEeCCCccCCcccccceEE--ecCCCEEEEeeCCcccCEEEEEEEEcCCCEEEeeEEE
Confidence 999999999998764322 233333 2334589999999999999999999999987665544
|
Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. |
| >cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4 | Back alignment and domain information |
|---|
Probab=98.93 E-value=5.3e-09 Score=78.49 Aligned_cols=57 Identities=21% Similarity=0.320 Sum_probs=46.1
Q ss_pred CcCceeeEEeeCCeeeccCC-ceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCceEE
Q psy7039 166 SEPFLNHGWSINGQVCQIGG-RADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATA 224 (516)
Q Consensus 166 ~~p~~~i~W~~~~~~~~~~~-~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~ 224 (516)
|.|.|.+.|++++..+.... ++.+. .....|.|.+++.+|+|.|.|.+.|..|....
T Consensus 9 g~P~p~v~W~k~g~~l~~~~~~~~~~--~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s 66 (77)
T cd05760 9 GHPRPTYQWFRDGTPLSDGQGNYSVS--SKERTLTLRSAGPDDSGLYYCCAHNAFGSVCS 66 (77)
T ss_pred ecCCCcEEEEECCEECCCCCccEEEe--CCCCEEEEeeCCcccCEEEEEEEEeCCCeEee
Confidence 99999999999999886543 33332 23458999999999999999999999887643
|
Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s |
| >cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2) | Back alignment and domain information |
|---|
Probab=98.93 E-value=5.9e-09 Score=80.94 Aligned_cols=74 Identities=24% Similarity=0.340 Sum_probs=55.2
Q ss_pred CCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeC----CeeeccCCc--eEEee-------cCCe
Q psy7039 129 GQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSIN----GQVCQIGGR--ADVQT-------TKSE 195 (516)
Q Consensus 129 g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~----~~~~~~~~~--~~~~~-------~~~~ 195 (516)
|+.+.|.|.+. |.|.|.|.|+++ +..+....+ ..+.. ....
T Consensus 1 G~~v~L~C~~~--------------------------g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 54 (90)
T cd05858 1 GSTVEFVCKVY--------------------------SDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEM 54 (90)
T ss_pred CCeEEEEEEEe--------------------------cCCCCEEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCce
Confidence 67899999999 999999999984 333332222 11111 1123
Q ss_pred eEEEeccCCCCCCeeEEEEEEcCCCceEEEEEe
Q psy7039 196 TVLDIPFCSRSDTGHYSLTLENNLGTATASAHV 228 (516)
Q Consensus 196 ~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~ 228 (516)
..|.|.+++.+|+|.|+|.+.|..|....+..+
T Consensus 55 ~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L 87 (90)
T cd05858 55 EVLYLRNVTFEDAGEYTCLAGNSIGISHHSAWL 87 (90)
T ss_pred eEEEEccCCHHHCEEEEEEEEeCCCcccceEEE
Confidence 689999999999999999999999987766544
|
Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination. |
| >cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins | Back alignment and domain information |
|---|
Probab=98.93 E-value=3.9e-09 Score=79.24 Aligned_cols=66 Identities=21% Similarity=0.361 Sum_probs=49.4
Q ss_pred EEEEEEEeeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCce----ecCCceEEEEEEEcCCCcee
Q psy7039 373 FTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAK----RATDSGSYTIQLVNTVGSDS 439 (516)
Q Consensus 373 ~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~----~~~~~g~y~c~a~n~~G~~s 439 (516)
+.|.|.+.|.|.|.+.|++++..+.......+........|.|..+. . .|.|.|.|.|.|..|...
T Consensus 1 i~l~C~~~G~P~P~v~W~k~g~~l~~~~~~~~~~~~~~g~L~i~~~~~~~~~-~d~G~Y~C~A~N~~G~~~ 70 (77)
T cd05733 1 IVIKCEAKGNPPPTFSWTRNGTHFDPEKDPRVTMKPDSGTLVIDNMNGGRAE-DYEGEYQCYASNELGTAI 70 (77)
T ss_pred CEEEeeCcccCCCeEEEEECCeECCCCCCCCEEEeCCCCEEEEeccCCCCCc-CCCEEEEEEEEcCCCcEE
Confidence 36899999999999999999988754332222333334568887764 3 689999999999999743
|
Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin. |
| >cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) | Back alignment and domain information |
|---|
Probab=98.93 E-value=4.4e-09 Score=77.57 Aligned_cols=60 Identities=23% Similarity=0.254 Sum_probs=47.9
Q ss_pred CcCceeeEEeeCCeeeccCCceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEEe
Q psy7039 166 SEPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHV 228 (516)
Q Consensus 166 ~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~ 228 (516)
|.|.|.+.|++++..+... +... ......|.|.+++.+|.|.|+|.+.|..|.......+
T Consensus 9 G~P~P~v~W~k~~~~~~~~-~~~~--~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l 68 (71)
T cd05876 9 GLPTPEVHWDRIDGPLSPN-RTKK--LNNNKTLQLDNVLESDDGEYVCTAENSEGSARHHYTV 68 (71)
T ss_pred EecCCeEEEEECCcCCCCC-ceeE--EcCCCEEEEcccCHHhCEEEEEEEEcCCCeEEEEEEE
Confidence 9999999999998776543 2222 2345699999999999999999999999987766544
|
Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM. |
| >cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins | Back alignment and domain information |
|---|
Probab=98.92 E-value=6.7e-09 Score=77.84 Aligned_cols=63 Identities=19% Similarity=0.232 Sum_probs=51.4
Q ss_pred CcCceeeEEeeCCeeeccCCceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEEe
Q psy7039 166 SEPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHV 228 (516)
Q Consensus 166 ~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~ 228 (516)
|.|.+.+.|++++..+....+.++...+....|.|.++..+|.|.|+|.+.|..|.....+.+
T Consensus 9 g~P~p~v~W~k~~~~l~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l 71 (76)
T cd05736 9 GIPLPRLTWLKNGMDITPKLSKQLTLIANGSELHISNVRYEDTGAYTCIAKNEAGVDEDISSL 71 (76)
T ss_pred ecCCCEEEEEECCEECCCCCCccEEEeCCCCEEEECcCCcccCEEEEEEEEcCCCCcceEEEE
Confidence 999999999999988876544444434455689999999999999999999999987766554
|
Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling. |
| >cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF) | Back alignment and domain information |
|---|
Probab=98.92 E-value=6.5e-09 Score=77.86 Aligned_cols=65 Identities=23% Similarity=0.319 Sum_probs=48.5
Q ss_pred EEEEEEEeeecCCceEEEECCeecC--CCCceEEEEcCCeEEEEEcCce---ecCCceEEEEEEEcCCCcee
Q psy7039 373 FTITVPFSGRPKPTPIWTVNGDEVS--PDGRIKFETSENQTIYRNKSAK---RATDSGSYTIQLVNTVGSDS 439 (516)
Q Consensus 373 ~~l~C~~~g~p~~~i~W~~~~~~l~--~~~~~~~~~~~~~~~l~i~~~~---~~~~~g~y~c~a~n~~G~~s 439 (516)
+.|.|.+.|.|.|.+.|++++..+. .+.++.+. .....|.|..+. +.+|.|.|.|.|.|..|...
T Consensus 1 ~~l~C~~~G~P~P~v~W~k~g~~~~~~~~~~~~~~--~~~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~ 70 (77)
T cd05875 1 IIIECEAKGNPVPTFQWTRNGKFFNVAKDPRVSMR--RRSGTLVIDFSGGGRPEDYEGEYQCFARNNLGTAL 70 (77)
T ss_pred CEEEEeccccCCCEEEEEECCEEccCcCCCcEEEe--CCCceEEEeccCCCCCCCCCEEEEEEEEeccceEE
Confidence 3689999999999999999998663 33444432 233578887653 21469999999999999753
|
Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms. |
| >cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs) | Back alignment and domain information |
|---|
Probab=98.91 E-value=8.7e-09 Score=77.69 Aligned_cols=72 Identities=21% Similarity=0.307 Sum_probs=58.1
Q ss_pred CcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCce-eeEEeeCCeeeccCCceEEeecCCeeE
Q psy7039 119 STLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFL-NHGWSINGQVCQIGGRADVQTTKSETV 197 (516)
Q Consensus 119 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~i~W~~~~~~~~~~~~~~~~~~~~~~~ 197 (516)
..+.++.+.+|+++.|.|.+. |.|.| .|+|++++..+.. + .....+.
T Consensus 3 ~~P~~~~v~~G~~v~l~C~a~--------------------------G~P~P~~I~W~k~g~~l~~--~----~~~~~s~ 50 (81)
T cd05749 3 VEPEDLSVTANTPFNLTCQAV--------------------------GPPEPVEILWWQGGSPLGD--P----PAPSPSV 50 (81)
T ss_pred CCCCceEEcCCCCEEEEEEee--------------------------eecCCeEEEEEECCEECCC--C----CCCCCCE
Confidence 345668899999999999999 99999 7999999988753 1 1223458
Q ss_pred EEeccCCCCCCeeEEEEEEcCCCceEE
Q psy7039 198 LDIPFCSRSDTGHYSLTLENNLGTATA 224 (516)
Q Consensus 198 l~i~~~~~~d~g~Y~c~~~~~~g~~~~ 224 (516)
|.|.++ .|.|.|.|.|+|..|....
T Consensus 51 L~i~~~--~d~g~Y~C~A~N~~G~~~s 75 (81)
T cd05749 51 LNVPGL--NETSKFSCEAHNAKGVTTS 75 (81)
T ss_pred EEEccc--cCCeEEEEEEEeccCcEEe
Confidence 889887 4789999999999996654
|
Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c |
| >cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain | Back alignment and domain information |
|---|
Probab=98.91 E-value=2.5e-08 Score=84.42 Aligned_cols=117 Identities=16% Similarity=0.196 Sum_probs=77.7
Q ss_pred eEEEccCCCCCceEEEEEEEecCCCcceeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeecccccccc
Q psy7039 281 SLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDL 360 (516)
Q Consensus 281 ~l~i~~l~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~ 360 (516)
.|.|.+++..|+|.|.|.+.+..|.....+.|.|..+|....
T Consensus 2 sL~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~v~~~P~v~~-------------------------------------- 43 (139)
T cd05771 2 SLTLPGLTVHDEGTYICSVSTPPHQAQQIIQLSVSEPPRVRL-------------------------------------- 43 (139)
T ss_pred eEEECCCCHHHCEEEEEEEEccCcceeeEEEEEEecCCceEE--------------------------------------
Confidence 689999999999999999999888888888888876554321
Q ss_pred ccccEEEEcCCeEEEEEEEeee-cC-CceEEEECCeecCC----CCceE---EEE--cCC---eEEEEEcCceecCCceE
Q psy7039 361 SIRDMTVLAGEEFTITVPFSGR-PK-PTPIWTVNGDEVSP----DGRIK---FET--SEN---QTIYRNKSAKRATDSGS 426 (516)
Q Consensus 361 ~~~~~~v~~g~~~~l~C~~~g~-p~-~~i~W~~~~~~l~~----~~~~~---~~~--~~~---~~~l~i~~~~~~~~~g~ 426 (516)
.+.......|..+.|.|.+.|. |. ..|.|++++..... ..... ... ++. .+.|.+..-.. ++...
T Consensus 44 ~~~~~~~~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~~~-~~g~~ 122 (139)
T cd05771 44 SLEKLVSMIEEPQTLICHIAGYYPLDVQVEWTREPPGDSPPPVSLSNVSFSSHRQHQDGTYSLSSHLTLEPGTE-DAGAT 122 (139)
T ss_pred eCCCceeecCCcEEEEEEECCCCCCCeEEEEEECCCCCccceeccCCeEecceEeCCCCCEEEEEEEEecCCcc-CCCCE
Confidence 1122333478889999999986 43 38999999854211 01110 111 111 13566655444 55679
Q ss_pred EEEEEEcCCC
Q psy7039 427 YTIQLVNTVG 436 (516)
Q Consensus 427 y~c~a~n~~G 436 (516)
|.|.+.+...
T Consensus 123 ytC~V~H~~l 132 (139)
T cd05771 123 YTCRVSHVSL 132 (139)
T ss_pred EEEEEEcCCC
Confidence 9999977643
|
IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal. |
| >cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors | Back alignment and domain information |
|---|
Probab=98.91 E-value=8.6e-09 Score=80.04 Aligned_cols=73 Identities=25% Similarity=0.287 Sum_probs=57.3
Q ss_pred CCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeee--------ccCCceEEeecCCeeEEEe
Q psy7039 129 GQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVC--------QIGGRADVQTTKSETVLDI 200 (516)
Q Consensus 129 g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~--------~~~~~~~~~~~~~~~~l~i 200 (516)
|+.+.|.|.+. +.|.+.+.|++++..+ ....++.+.. ...|.|
T Consensus 1 G~~v~L~C~~~--------------------------g~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v~~---~~~L~I 51 (90)
T cd05726 1 GRTVTFQCEAT--------------------------GNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVSQ---TGDLTI 51 (90)
T ss_pred CCEEEEEEECC--------------------------ccCCCEEEEEeCCCcceeecccCCCCCCeEEECC---CCeEEE
Confidence 68899999999 9999999999987543 1233444422 347999
Q ss_pred ccCCCCCCeeEEEEEEcCCCceEEEEEeec
Q psy7039 201 PFCSRSDTGHYSLTLENNLGTATASAHVTG 230 (516)
Q Consensus 201 ~~~~~~d~g~Y~c~~~~~~g~~~~~~~~~~ 230 (516)
.+++.+|+|.|.|.+.|..|.......+.+
T Consensus 52 ~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 81 (90)
T cd05726 52 TNVQRSDVGYYICQTLNVAGSILTKAYLEV 81 (90)
T ss_pred eeCChhhCEEEEEEEEcCCCceEEEEEEEE
Confidence 999999999999999999998776655444
|
Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni |
| >cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors | Back alignment and domain information |
|---|
Probab=98.91 E-value=7.6e-09 Score=75.86 Aligned_cols=59 Identities=27% Similarity=0.423 Sum_probs=47.3
Q ss_pred CcCceeeEEeeCCeeeccCCceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEEe
Q psy7039 166 SEPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHV 228 (516)
Q Consensus 166 ~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~ 228 (516)
|.|.+.+.|++++..+. ..++.+. ....|.|.+++.+|+|.|+|.+.|..|.......+
T Consensus 9 g~P~p~v~W~k~~~~~~-~~~~~~~---~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l 67 (69)
T cd05725 9 GDPVPTVLWRKEDGELP-KGRAEIL---DDKSLKIRNVTAGDEGSYTCEAENMVGKIEASASL 67 (69)
T ss_pred cCCCCEEEEEECCccCC-CCcEEEe---eCCEEEECcCChhHCEEEEEEEEcCCCcEEEEEEE
Confidence 99999999999877654 3344443 33589999999999999999999999987765543
|
Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni |
| >cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins | Back alignment and domain information |
|---|
Probab=98.90 E-value=5e-09 Score=78.61 Aligned_cols=59 Identities=24% Similarity=0.294 Sum_probs=45.4
Q ss_pred CcCceeeEEeeCCeeeccCCceEEeecCCeeEEEeccCCC----CCCeeEEEEEEcCCCceEE
Q psy7039 166 SEPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFCSR----SDTGHYSLTLENNLGTATA 224 (516)
Q Consensus 166 ~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~----~d~g~Y~c~~~~~~g~~~~ 224 (516)
|.|.|.++|++++..+.......+........|.|.++.. +|+|.|.|.+.|..|....
T Consensus 9 G~P~P~v~W~k~g~~l~~~~~~~~~~~~~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s 71 (77)
T cd05733 9 GNPPPTFSWTRNGTHFDPEKDPRVTMKPDSGTLVIDNMNGGRAEDYEGEYQCYASNELGTAIS 71 (77)
T ss_pred ccCCCeEEEEECCeECCCCCCCCEEEeCCCCEEEEeccCCCCCcCCCEEEEEEEEcCCCcEEc
Confidence 9999999999999888644333333344466888988854 7899999999999987543
|
Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin. |
| >cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins | Back alignment and domain information |
|---|
Probab=98.89 E-value=7.8e-09 Score=79.15 Aligned_cols=76 Identities=22% Similarity=0.256 Sum_probs=58.5
Q ss_pred CCeEEEEEEEeee--cCCceEEEECCeecCCCC----ceE-EEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEEE
Q psy7039 370 GEEFTITVPFSGR--PKPTPIWTVNGDEVSPDG----RIK-FETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASC 442 (516)
Q Consensus 370 g~~~~l~C~~~g~--p~~~i~W~~~~~~l~~~~----~~~-~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~ 442 (516)
|+.+.|.|.+.+. |.+.+.|.+++..+.... +.. .........|.|.+++. .|+|.|.|.|.|..|..+.+.
T Consensus 1 Ge~~~L~C~~~g~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~-~DsG~Y~C~a~n~~~~~~~s~ 79 (84)
T cd05742 1 GETLVLNCTVLTELNEGVDFQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNATL-KDSGTYTCAASSGTMDQKEST 79 (84)
T ss_pred CCeEEEEEEEEeCCCccEEEEEecCCcccCCceEeecccccccceEEEEEEEECCCCh-hhCEEEEEEEccCCCceEEEE
Confidence 6889999999999 788999998776542211 111 11112346899999999 999999999999999998888
Q ss_pred EEEE
Q psy7039 443 KVYV 446 (516)
Q Consensus 443 ~l~v 446 (516)
.|.|
T Consensus 80 ~v~v 83 (84)
T cd05742 80 KVNI 83 (84)
T ss_pred EEEE
Confidence 8876
|
Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF |
| >cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.6e-08 Score=75.27 Aligned_cols=71 Identities=27% Similarity=0.380 Sum_probs=56.3
Q ss_pred CCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEee-CCeeeccCCceEEeecCCeeEEEeccCCCCC
Q psy7039 129 GQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSI-NGQVCQIGGRADVQTTKSETVLDIPFCSRSD 207 (516)
Q Consensus 129 g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~-~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d 207 (516)
|+.+.|.|.+. |.|.+.+.|++ ++..+....+..... ..+|.|.++..+|
T Consensus 1 G~~~~l~C~~~--------------------------g~P~p~v~W~~~~~~~~~~~~~~~~~~---~~~L~i~~~~~~D 51 (74)
T cd05764 1 GQRATLRCKAR--------------------------GDPEPAIHWISPDGKLISNSSRTLVYD---NGTLDILITTVKD 51 (74)
T ss_pred CCeEEEEEEcc--------------------------CcCCCEEEEEeCCCEEecCCCeEEEec---CCEEEEEECChhh
Confidence 68899999999 99999999997 555555444443322 3479999999999
Q ss_pred CeeEEEEEEcCCCceEEEEEe
Q psy7039 208 TGHYSLTLENNLGTATASAHV 228 (516)
Q Consensus 208 ~g~Y~c~~~~~~g~~~~~~~~ 228 (516)
.|.|+|.+.|..|.....+.+
T Consensus 52 ~G~Y~C~a~N~~G~~~~~~~l 72 (74)
T cd05764 52 TGSFTCIASNAAGEATATVEL 72 (74)
T ss_pred CEEEEEEEECCCCeEEEEEEE
Confidence 999999999999987665543
|
Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. |
| >cd05849 Ig1_Contactin-1 First Ig domain of contactin-1 | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.5e-08 Score=78.99 Aligned_cols=66 Identities=20% Similarity=0.249 Sum_probs=53.3
Q ss_pred CCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeecc-CCceEEeecCCeeEEEeccCC-CC
Q psy7039 129 GQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQI-GGRADVQTTKSETVLDIPFCS-RS 206 (516)
Q Consensus 129 g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~-~~~~~~~~~~~~~~l~i~~~~-~~ 206 (516)
|..+.|.|.+. |.|.+.++|++++..+.. ..++.+. ...|.|.++. .+
T Consensus 19 ~~~v~l~C~a~--------------------------G~P~P~i~W~k~~~~i~~~~~~~~~~----~g~L~I~~~~~~~ 68 (93)
T cd05849 19 EGKVSVNCRAR--------------------------ANPFPIYKWRKNNLDIDLTNDRYSMV----GGNLVINNPDKYK 68 (93)
T ss_pred CCeEEEeCcCc--------------------------cCCCCEEEEEECCEEccCCCCeEEEE----CCEEEECcCCcCC
Confidence 34799999999 999999999999988753 3344332 3589999985 69
Q ss_pred CCeeEEEEEEcCCCceEE
Q psy7039 207 DTGHYSLTLENNLGTATA 224 (516)
Q Consensus 207 d~g~Y~c~~~~~~g~~~~ 224 (516)
|+|.|.|.+.|..|....
T Consensus 69 D~G~Y~C~A~N~~G~~~s 86 (93)
T cd05849 69 DAGRYVCIVSNIYGKVRS 86 (93)
T ss_pred CCEEEEEEEEeCcceEEE
Confidence 999999999999987644
|
Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. |
| >cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1) | Back alignment and domain information |
|---|
Probab=98.88 E-value=1e-08 Score=75.11 Aligned_cols=66 Identities=21% Similarity=0.235 Sum_probs=51.8
Q ss_pred EEEEEEeeecCCceEEEECCeecCCC-CceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEE
Q psy7039 374 TITVPFSGRPKPTPIWTVNGDEVSPD-GRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKV 444 (516)
Q Consensus 374 ~l~C~~~g~p~~~i~W~~~~~~l~~~-~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l 444 (516)
.|.|.+.|.|.|.+.|++++..+... .++. .. ..+|.|.++.. +|+|.|+|.|.|..........+
T Consensus 2 ~l~c~v~g~P~P~v~W~kdg~~l~~~~~~~~--~~--~~~L~I~~v~~-~D~G~YtC~a~~~~~~~~~~~~i 68 (72)
T cd07702 2 RLTPKVKAFPAPEVIWLKDGLPAAEKCSRYH--VD--GYSLVIKDVTE-EDAGIYTILLGIKQYNLFKNLTI 68 (72)
T ss_pred eEEeeEEEcCCCeEEEEECCEECCCCCcEEE--eC--CCEEEECcCCH-HHCEEEEEEEEccccceEeeEEE
Confidence 58999999999999999999887654 3332 22 23799999999 99999999999986654444433
|
Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells. |
| >cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2) | Back alignment and domain information |
|---|
Probab=98.88 E-value=3e-08 Score=77.24 Aligned_cols=82 Identities=16% Similarity=0.225 Sum_probs=67.0
Q ss_pred cccEEEEcCCeEEEEEEEeeecCC-ceEEEECCeecCC--CCceEEEEc----CCeEEEEEcCceecCC-ceEEEEEEEc
Q psy7039 362 IRDMTVLAGEEFTITVPFSGRPKP-TPIWTVNGDEVSP--DGRIKFETS----ENQTIYRNKSAKRATD-SGSYTIQLVN 433 (516)
Q Consensus 362 ~~~~~v~~g~~~~l~C~~~g~p~~-~i~W~~~~~~l~~--~~~~~~~~~----~~~~~l~i~~~~~~~~-~g~y~c~a~n 433 (516)
.+...+..|+.+.|.|.+.+.|+| .|.|.+.+..+.. ..+|.+... +..+.|+|.++.. .| .|.|.|.|.|
T Consensus 8 ~~s~~~~~G~~~~L~C~~~s~P~P~~i~W~w~~~~i~~~~~~r~~I~~~~~~~g~~S~L~I~~~~~-~d~~g~Y~C~a~N 86 (98)
T cd05898 8 EQVQYAVRGERGKVKCFIGSTPPPDRIAWAWKENVLESGTSERYTVERTSTGSGVLSTLTINNIME-ADFQTHYNCTAWN 86 (98)
T ss_pred CceEEEeCCCcEEEEEEEccCCCCcEEEEEEccccccCCCCCCEEEEEEccCCCcEEEEEECCCcc-ccCCcEEEEEEEe
Confidence 456788999999999999999888 6899988877644 357777654 3668999999987 56 7999999999
Q ss_pred CCCceeEEEEE
Q psy7039 434 TVGSDSASCKV 444 (516)
Q Consensus 434 ~~G~~s~s~~l 444 (516)
..|.+...+.|
T Consensus 87 ~~G~d~~~i~L 97 (98)
T cd05898 87 SFGSGTAIIQL 97 (98)
T ss_pred CCccceEEEEe
Confidence 99998776654
|
Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm. |
| >cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR) | Back alignment and domain information |
|---|
Probab=98.87 E-value=7.9e-09 Score=80.18 Aligned_cols=74 Identities=23% Similarity=0.315 Sum_probs=54.5
Q ss_pred CCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCC----eeeccCC--ceEEee-------cCCe
Q psy7039 129 GQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSING----QVCQIGG--RADVQT-------TKSE 195 (516)
Q Consensus 129 g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~----~~~~~~~--~~~~~~-------~~~~ 195 (516)
|+.+.|.|.+. |.|.|.|+|++++ ..+.... ...+.. .+..
T Consensus 1 G~~v~l~C~v~--------------------------g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 54 (90)
T cd04974 1 GSDVEFHCKVY--------------------------SDAQPHIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNES 54 (90)
T ss_pred CCcEEEEEEEe--------------------------CCCCCeEEEEEecccCCceeCCCCCceEEEEEecCCccccccc
Confidence 67899999999 9999999999853 2222111 111111 1234
Q ss_pred eEEEeccCCCCCCeeEEEEEEcCCCceEEEEEe
Q psy7039 196 TVLDIPFCSRSDTGHYSLTLENNLGTATASAHV 228 (516)
Q Consensus 196 ~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~ 228 (516)
..|.|.+++.+|+|.|+|.|.|..|...+++.+
T Consensus 55 ~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~sa~L 87 (90)
T cd04974 55 EVLYLRNVSFDDAGEYTCLAGNSIGPSHHSAWL 87 (90)
T ss_pred ceEEEeccccccCcEEEEEeecccCcccCCEEE
Confidence 589999999999999999999999987766544
|
Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. |
| >cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule) | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.1e-08 Score=76.64 Aligned_cols=59 Identities=24% Similarity=0.340 Sum_probs=43.6
Q ss_pred CcCceeeEEeeCCeeeccCCceEEeecCCeeEEEeccCCC----CCCeeEEEEEEcCCCceEE
Q psy7039 166 SEPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFCSR----SDTGHYSLTLENNLGTATA 224 (516)
Q Consensus 166 ~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~----~d~g~Y~c~~~~~~g~~~~ 224 (516)
|.|.|+++|++++..+.......+......++|.|..+.. .|.|.|+|.|.|..|...+
T Consensus 9 G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s 71 (77)
T cd05874 9 GKPPPSFSWTRNGTHFDIDKDPKVTMKPNTGTLVINIMNGEKAEAYEGVYQCTARNERGAAVS 71 (77)
T ss_pred ccCCCeEEEEECCeECCCcCCCCEEEeCCCceEEEeccccCCCCCCCEEEEEEEEcCCCeEEe
Confidence 9999999999999887433332233334455788877764 3789999999999997654
|
Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system. |
| >cd04970 Ig6_Contactin_like Sixth Ig domain of contactin | Back alignment and domain information |
|---|
Probab=98.85 E-value=2.2e-08 Score=76.81 Aligned_cols=74 Identities=23% Similarity=0.321 Sum_probs=56.2
Q ss_pred CeEEEEEeeeeccccccCccccccccccCccceeecCcCce--eeEEeeCCeeeccCC---ceE-EeecCCeeEEEeccC
Q psy7039 130 QSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFL--NHGWSINGQVCQIGG---RAD-VQTTKSETVLDIPFC 203 (516)
Q Consensus 130 ~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~i~W~~~~~~~~~~~---~~~-~~~~~~~~~l~i~~~ 203 (516)
+.+.|.|.+. +.|.+ .+.|++++..+.... ++. .......+.|.|.++
T Consensus 1 e~~~L~C~~~--------------------------g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v 54 (85)
T cd04970 1 ESITLQCHAS--------------------------HDPTLDLTFTWSFNGVPIDFDKDGGHYRRVGGKDSNGDLMIRNA 54 (85)
T ss_pred CcEEEEEEEe--------------------------cCCCCCeEEEEEECCeEeeccCCCccEEEEecccccceEEEccC
Confidence 4678999999 88876 678999998876432 222 222334678999999
Q ss_pred CCCCCeeEEEEEEcCCCceEEEEEee
Q psy7039 204 SRSDTGHYSLTLENNLGTATASAHVT 229 (516)
Q Consensus 204 ~~~d~g~Y~c~~~~~~g~~~~~~~~~ 229 (516)
+..|+|.|+|.+.|..|....+..+.
T Consensus 55 ~~~D~G~Y~C~a~n~~g~~~~~~~l~ 80 (85)
T cd04970 55 QLKHAGKYTCTAQTVVDSLSASADLI 80 (85)
T ss_pred CHHhCeeeEEEEecCCCcEEEEEEEE
Confidence 99999999999999988776655443
|
Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week |
| >cd05849 Ig1_Contactin-1 First Ig domain of contactin-1 | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.2e-08 Score=77.98 Aligned_cols=70 Identities=16% Similarity=0.240 Sum_probs=54.6
Q ss_pred CCeEEEEEEEeeecCCceEEEECCeecCC-CCceEEEEcCCeEEEEEcCce-ecCCceEEEEEEEcCCCce-eEEEEE
Q psy7039 370 GEEFTITVPFSGRPKPTPIWTVNGDEVSP-DGRIKFETSENQTIYRNKSAK-RATDSGSYTIQLVNTVGSD-SASCKV 444 (516)
Q Consensus 370 g~~~~l~C~~~g~p~~~i~W~~~~~~l~~-~~~~~~~~~~~~~~l~i~~~~-~~~~~g~y~c~a~n~~G~~-s~s~~l 444 (516)
|..+.|.|.+.|.|.|.+.|++++..+.. ..++.+. . ..|.|.++. . .|.|.|.|.|.|..|.. +..+.|
T Consensus 19 ~~~v~l~C~a~G~P~P~i~W~k~~~~i~~~~~~~~~~--~--g~L~I~~~~~~-~D~G~Y~C~A~N~~G~~~s~~a~l 91 (93)
T cd05849 19 EGKVSVNCRARANPFPIYKWRKNNLDIDLTNDRYSMV--G--GNLVINNPDKY-KDAGRYVCIVSNIYGKVRSREATL 91 (93)
T ss_pred CCeEEEeCcCccCCCCEEEEEECCEEccCCCCeEEEE--C--CEEEECcCCcC-CCCEEEEEEEEeCcceEEEccEEE
Confidence 44799999999999999999999988753 3344332 2 468998875 6 89999999999999985 334444
|
Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. |
| >cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1 | Back alignment and domain information |
|---|
Probab=98.84 E-value=2e-08 Score=75.20 Aligned_cols=70 Identities=20% Similarity=0.381 Sum_probs=54.6
Q ss_pred EEEEEEEee-ecCCceEEEECCeecCCC----CceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEEEE
Q psy7039 373 FTITVPFSG-RPKPTPIWTVNGDEVSPD----GRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCK 443 (516)
Q Consensus 373 ~~l~C~~~g-~p~~~i~W~~~~~~l~~~----~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~ 443 (516)
+.|.|.+.+ .|.+.+.|++++..+... .++..........|.|.++.. .|+|.|.|.|.|..|..+.++.
T Consensus 1 ~~L~C~a~~~~p~~~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~-~DsG~Y~C~a~N~~g~~~~~~~ 75 (76)
T cd05895 1 LVLRCETVSEYPSLRFKWFKNGKEIGAKNKPDNKIKIRKKKKSSELQISKASL-ADNGEYKCMVSSKLGNDSVTAN 75 (76)
T ss_pred CEEEEecccCCCCCceEEEECCcccccCCCCCceEEEEeCCcEEEEEECcCCc-ccCEEEEEEEEeCCCceeEEEe
Confidence 368999874 577899999999887532 223444444567899999999 9999999999999998777654
|
Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process |
| >cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1) | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.3e-08 Score=74.61 Aligned_cols=55 Identities=20% Similarity=0.150 Sum_probs=43.6
Q ss_pred CcCceeeEEeeCCeeeccC-CceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCceEE
Q psy7039 166 SEPFLNHGWSINGQVCQIG-GRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATA 224 (516)
Q Consensus 166 ~~p~~~i~W~~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~ 224 (516)
|.|.|.+.|++++.++... .++.. . ..+|.|.+++.+|+|.|+|.+++.......
T Consensus 9 g~P~P~v~W~kdg~~l~~~~~~~~~--~--~~~L~I~~v~~~D~G~YtC~a~~~~~~~~~ 64 (72)
T cd07702 9 AFPAPEVIWLKDGLPAAEKCSRYHV--D--GYSLVIKDVTEEDAGIYTILLGIKQYNLFK 64 (72)
T ss_pred EcCCCeEEEEECCEECCCCCcEEEe--C--CCEEEECcCCHHHCEEEEEEEEccccceEe
Confidence 9999999999999987654 33322 2 247999999999999999999987555443
|
Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells. |
| >cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF) | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.9e-08 Score=75.35 Aligned_cols=58 Identities=28% Similarity=0.492 Sum_probs=43.7
Q ss_pred CcCceeeEEeeCCeeecc--CCceEEeecCCeeEEEeccCC----CCCCeeEEEEEEcCCCceEEE
Q psy7039 166 SEPFLNHGWSINGQVCQI--GGRADVQTTKSETVLDIPFCS----RSDTGHYSLTLENNLGTATAS 225 (516)
Q Consensus 166 ~~p~~~i~W~~~~~~~~~--~~~~~~~~~~~~~~l~i~~~~----~~d~g~Y~c~~~~~~g~~~~~ 225 (516)
|.|.|.++|++++..+.. ..++.+ .....+|.|.++. .+|+|.|.|.+.|..|.....
T Consensus 9 G~P~P~v~W~k~g~~~~~~~~~~~~~--~~~~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~ 72 (77)
T cd05875 9 GNPVPTFQWTRNGKFFNVAKDPRVSM--RRRSGTLVIDFSGGGRPEDYEGEYQCFARNNLGTALSN 72 (77)
T ss_pred ccCCCEEEEEECCEEccCcCCCcEEE--eCCCceEEEeccCCCCCCCCCEEEEEEEEeccceEEEE
Confidence 999999999999987643 344443 3344688898764 246999999999999976543
|
Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms. |
| >cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.3e-08 Score=75.07 Aligned_cols=60 Identities=27% Similarity=0.348 Sum_probs=47.3
Q ss_pred CcCceeeEEeeCCeeeccCCceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEEe
Q psy7039 166 SEPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHV 228 (516)
Q Consensus 166 ~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~ 228 (516)
|.|.|.+.|++++..+... +... ......|.|.+++.+|+|.|+|.+.|..|.......+
T Consensus 9 g~P~p~v~W~k~~~~~~~~-~~~~--~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l 68 (71)
T cd05731 9 GLPTPEISWIKIGGELPAD-RTKF--ENFNKTLKIDNVSEEDDGEYRCTASNSLGSARHTISV 68 (71)
T ss_pred EecCCeEEEEECCeECCCC-ceeE--ecCCCEEEECCCCHHHCEEEEEEEEeCCceEEEEEEE
Confidence 9999999999998776532 2222 2345689999999999999999999999987665543
|
Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin. |
| >cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1 | Back alignment and domain information |
|---|
Probab=98.83 E-value=2.4e-08 Score=74.76 Aligned_cols=61 Identities=25% Similarity=0.422 Sum_probs=48.2
Q ss_pred CcCceeeEEeeCCeeeccC----CceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEE
Q psy7039 166 SEPFLNHGWSINGQVCQIG----GRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASA 226 (516)
Q Consensus 166 ~~p~~~i~W~~~~~~~~~~----~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~ 226 (516)
+.|.+.+.|++++..+... .++.+........|.|.+++.+|+|.|+|.+.|..|....++
T Consensus 10 ~~p~~~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~~~~ 74 (76)
T cd05895 10 EYPSLRFKWFKNGKEIGAKNKPDNKIKIRKKKKSSELQISKASLADNGEYKCMVSSKLGNDSVTA 74 (76)
T ss_pred CCCCCceEEEECCcccccCCCCCceEEEEeCCcEEEEEECcCCcccCEEEEEEEEeCCCceeEEE
Confidence 3678899999999888532 233444445667999999999999999999999998876654
|
Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process |
| >cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4 | Back alignment and domain information |
|---|
Probab=98.83 E-value=2.2e-08 Score=75.88 Aligned_cols=74 Identities=18% Similarity=0.240 Sum_probs=56.4
Q ss_pred CeEEEEEeeeeccccccCccccccccccCccceeecC--cCceeeEEeeCCeeecc---CCceEEeec-CCeeEEEeccC
Q psy7039 130 QSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLS--EPFLNHGWSINGQVCQI---GGRADVQTT-KSETVLDIPFC 203 (516)
Q Consensus 130 ~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~p~~~i~W~~~~~~~~~---~~~~~~~~~-~~~~~l~i~~~ 203 (516)
+++.|.|.+. + .+.+.+.|++++..+.. ..++..... ...+.|.|.++
T Consensus 1 ~~~~l~C~v~--------------------------~d~~l~~~~~W~~dg~~i~~~~~~~~~~~~~~~~~~~~L~I~nv 54 (85)
T cd05853 1 ESIVLPCQVS--------------------------HDHSLDIVFTWSFNGHLIDFQKDGDHFERVGGQDSAGDLMIRSI 54 (85)
T ss_pred CcEEEEEEec--------------------------cCCCCCcEEEEEECCEECcccCCCccEEEeccCCCCCcEEEecC
Confidence 3678999998 5 45788999999999962 224433211 34568999999
Q ss_pred CCCCCeeEEEEEEcCCCceEEEEEee
Q psy7039 204 SRSDTGHYSLTLENNLGTATASAHVT 229 (516)
Q Consensus 204 ~~~d~g~Y~c~~~~~~g~~~~~~~~~ 229 (516)
+..|+|.|+|.+.|..+...++..+.
T Consensus 55 ~~~dsG~YtC~a~n~~~~~~a~a~L~ 80 (85)
T cd05853 55 QLKHAGKYVCMVQTSVDKLSAAADLI 80 (85)
T ss_pred CHHHCEEEEEEEEcccCceEEEEEEE
Confidence 99999999999999988877665443
|
Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16. |
| >cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.4e-08 Score=75.55 Aligned_cols=54 Identities=24% Similarity=0.295 Sum_probs=44.6
Q ss_pred CcCceeeEEeeCCeeecc--CCceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCce
Q psy7039 166 SEPFLNHGWSINGQVCQI--GGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTA 222 (516)
Q Consensus 166 ~~p~~~i~W~~~~~~~~~--~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~ 222 (516)
|.|.|.+.|++++..+.. ..++... ....|.|.+++.+|+|.|+|.+.|..|..
T Consensus 9 G~P~p~v~W~k~~~~~~~~~~~~~~~~---~~g~L~i~~~~~~D~G~Y~C~a~N~~G~~ 64 (74)
T cd05738 9 GNPDPEITWFKDFLPVDTTSNGRIKQL---RSGALQIENSEESDQGKYECVATNSAGTR 64 (74)
T ss_pred EecCCEEEEEECCEECccCCCCCEEEc---CCcEEEECCCChhhCEEEEEEEECCCCce
Confidence 999999999999988763 3444442 23479999999999999999999998874
|
Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. |
| >cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.9e-08 Score=76.92 Aligned_cols=74 Identities=19% Similarity=0.339 Sum_probs=56.0
Q ss_pred CCeEEEEEeeeeccccccCccccccccccCccceeecCc--CceeeEEeeCCeeeccCCc-----eEEeecCCeeEEEec
Q psy7039 129 GQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSE--PFLNHGWSINGQVCQIGGR-----ADVQTTKSETVLDIP 201 (516)
Q Consensus 129 g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--p~~~i~W~~~~~~~~~~~~-----~~~~~~~~~~~l~i~ 201 (516)
|+.+.|.|.+. +. |.+.+.|.+++..+..... .........+.|.|.
T Consensus 1 Ge~~~L~C~~~--------------------------g~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~ 54 (84)
T cd05742 1 GETLVLNCTVL--------------------------TELNEGVDFQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIP 54 (84)
T ss_pred CCeEEEEEEEE--------------------------eCCCccEEEEEecCCcccCCceEeecccccccceEEEEEEEEC
Confidence 78899999999 88 8899999987765532211 111112345799999
Q ss_pred cCCCCCCeeEEEEEEcCCCceEEEEEe
Q psy7039 202 FCSRSDTGHYSLTLENNLGTATASAHV 228 (516)
Q Consensus 202 ~~~~~d~g~Y~c~~~~~~g~~~~~~~~ 228 (516)
+++.+|+|.|+|.+.|..|....+..+
T Consensus 55 ~v~~~DsG~Y~C~a~n~~~~~~~s~~v 81 (84)
T cd05742 55 NATLKDSGTYTCAASSGTMDQKESTKV 81 (84)
T ss_pred CCChhhCEEEEEEEccCCCceEEEEEE
Confidence 999999999999999998887766544
|
Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF |
| >cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM) | Back alignment and domain information |
|---|
Probab=98.81 E-value=2.3e-08 Score=75.55 Aligned_cols=70 Identities=30% Similarity=0.419 Sum_probs=52.1
Q ss_pred EEEEEEEeeecCCceEEEECCeecC--------CCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCce-eEEEE
Q psy7039 373 FTITVPFSGRPKPTPIWTVNGDEVS--------PDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSD-SASCK 443 (516)
Q Consensus 373 ~~l~C~~~g~p~~~i~W~~~~~~l~--------~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~-s~s~~ 443 (516)
+.|.|.+.|.|.|.+.|++++.... ...++... ...+|.|.++.. .|.|.|.|.|.|..|.. +.++.
T Consensus 1 v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~r~~~~---~~~~L~I~~v~~-~D~G~Y~C~a~N~~G~~~s~~~~ 76 (79)
T cd05734 1 VTLNCSAEGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQLL---SNGSLLIKHVLE-EDSGYYLCKVSNDVGADASKSMV 76 (79)
T ss_pred CEeEeeCeEeCCCEEEEEECCCccccccccccccCCCEEEe---cCCeEEECcCCc-ccCEEEEEEEEeCCCCCCceEEE
Confidence 4689999999999999999643211 22333332 225799999999 99999999999999985 55555
Q ss_pred EEE
Q psy7039 444 VYV 446 (516)
Q Consensus 444 l~v 446 (516)
|+|
T Consensus 77 l~~ 79 (79)
T cd05734 77 LTV 79 (79)
T ss_pred EeC
Confidence 543
|
Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion. |
| >cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b) | Back alignment and domain information |
|---|
Probab=98.81 E-value=3.6e-08 Score=75.27 Aligned_cols=77 Identities=18% Similarity=0.257 Sum_probs=57.2
Q ss_pred CCeEEEEEEEeeecCCceEEEECCeecCCCC----ceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCC--ceeEEEE
Q psy7039 370 GEEFTITVPFSGRPKPTPIWTVNGDEVSPDG----RIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVG--SDSASCK 443 (516)
Q Consensus 370 g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~----~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G--~~s~s~~ 443 (516)
|+.+.|.|.+.+.|.+.+.|.+.+....... +..+........|.|.+++. .|+|.|.|.|.|..+ ..+.++.
T Consensus 1 Ge~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~-~DsG~Y~C~a~n~~~~~~~~~sv~ 79 (84)
T cd05861 1 GETITVNCIVQGNEVVDFSWTYPGKDIGKGIPEVEEVKVPATTLRSTLTFPHATV-EDSGTYECAAHESTQDQKAFKKVN 79 (84)
T ss_pred CCcEEEEEEEECCCccEEEEEECCccCCCCceEEEEEecCCcEEEEEEEECCCCc-CCCEEEEEEEEECccCcceeEEEE
Confidence 6889999999999999999998775432111 11111112246899999999 999999999999876 5677777
Q ss_pred EEEe
Q psy7039 444 VYVV 447 (516)
Q Consensus 444 l~v~ 447 (516)
|+|.
T Consensus 80 i~V~ 83 (84)
T cd05861 80 ITVH 83 (84)
T ss_pred EEEe
Confidence 7774
|
Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development. |
| >cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins | Back alignment and domain information |
|---|
Probab=98.81 E-value=5.4e-08 Score=74.62 Aligned_cols=81 Identities=31% Similarity=0.419 Sum_probs=64.5
Q ss_pred EEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEE-EEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEEEE
Q psy7039 365 MTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKF-ETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCK 443 (516)
Q Consensus 365 ~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~-~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~ 443 (516)
+.+..|+.+.|.|.+.+.|.+.+.|++++..+.....+.. ........|.|.++.. .|.|.|.|.+.|..|....++.
T Consensus 4 ~~~~~G~~~~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~-~d~g~Y~C~~~n~~g~~~~~~~ 82 (85)
T cd05729 4 HAVPAGSTVRLKCPASGNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVP-SDSGKYTCIVENKYGSINHTYK 82 (85)
T ss_pred eEecCCCcEEEEEEcCCCCCCeEEEEECCEECcccCceeEEEccCcEEEEEEeECCc-ccCEEEEEEEEECCceEEEEEE
Confidence 4567899999999999999999999999987754433332 2233445799999999 9999999999999998877776
Q ss_pred EEE
Q psy7039 444 VYV 446 (516)
Q Consensus 444 l~v 446 (516)
|.|
T Consensus 83 l~v 85 (85)
T cd05729 83 VDV 85 (85)
T ss_pred EeC
Confidence 653
|
Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin |
| >cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)) | Back alignment and domain information |
|---|
Probab=98.80 E-value=5.4e-08 Score=76.10 Aligned_cols=83 Identities=18% Similarity=0.257 Sum_probs=62.8
Q ss_pred cccEEEEcCCeEEEEEEEeeecCCceEEEEC--------CeecCCCCceEEEE-cCCeEEEEEcCceecCCceEEEEEEE
Q psy7039 362 IRDMTVLAGEEFTITVPFSGRPKPTPIWTVN--------GDEVSPDGRIKFET-SENQTIYRNKSAKRATDSGSYTIQLV 432 (516)
Q Consensus 362 ~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~--------~~~l~~~~~~~~~~-~~~~~~l~i~~~~~~~~~g~y~c~a~ 432 (516)
..++.+.+|+.+.|.|.+.+.|.+.+.|++. +.....+.++.... .....+|.|.++.. .|+|.|.|.+.
T Consensus 4 ~~~v~v~eG~~v~L~C~~~~~p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~-~DsG~Y~C~~~ 82 (95)
T cd07701 4 TQNVTVVEGGTANLTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISISDVSL-SDEGQYTCSLF 82 (95)
T ss_pred cceEEEecCCcEEEEEEEecCCceEEEEeCCCCeEEEEcCcccccCCCEEEEECCCCcEEEEECcCCc-ccCEEEEEEeE
Confidence 4678899999999999999999999999853 22222345665533 23557899999999 99999999999
Q ss_pred cCCCceeEEEEEEE
Q psy7039 433 NTVGSDSASCKVYV 446 (516)
Q Consensus 433 n~~G~~s~s~~l~v 446 (516)
+..+ .+.++.|+|
T Consensus 83 t~~~-~~~~~~l~v 95 (95)
T cd07701 83 TMPV-KTSKAYLTV 95 (95)
T ss_pred eecC-ccEEEEEEC
Confidence 8533 366666654
|
Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes. |
| >cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)) | Back alignment and domain information |
|---|
Probab=98.80 E-value=5e-08 Score=76.06 Aligned_cols=82 Identities=21% Similarity=0.316 Sum_probs=61.0
Q ss_pred cccEEEEcCCeEEEEEEEeeecCCceEEEECCeec--------CCCCceEEEEc-CCeEEEEEcCceecCCceEEEEEEE
Q psy7039 362 IRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEV--------SPDGRIKFETS-ENQTIYRNKSAKRATDSGSYTIQLV 432 (516)
Q Consensus 362 ~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l--------~~~~~~~~~~~-~~~~~l~i~~~~~~~~~g~y~c~a~ 432 (516)
..+..+..|+.+.|.|.+.+.|.+.|.|.+.+..+ ..+.++.+... .....|.|.++.. .|.|.|+|.+.
T Consensus 4 ~~~~tv~~G~tv~L~C~v~g~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~nV~~-~D~G~YtC~~~ 82 (95)
T cd05882 4 TQDETVAVGGTVTLKCGVKEHDNSSLQWSNTAQQTLYFGEKRALRDNRIQLVKSTPTELIISISNVQL-SDEGEYTCSIF 82 (95)
T ss_pred cccEEEecCCcEEEEEEEeCCCCCeEEEeccCccEEEeCCeEEEeCCeEEEEeCCCceEEEEECCCCc-ccCEEEEEEEE
Confidence 35678999999999999999999999999877532 12344443332 2357899999999 99999999998
Q ss_pred cCCCceeEEEEEE
Q psy7039 433 NTVGSDSASCKVY 445 (516)
Q Consensus 433 n~~G~~s~s~~l~ 445 (516)
.. -..+..+.|+
T Consensus 83 t~-~~~~~~~~~~ 94 (95)
T cd05882 83 TM-PVRTAKATVT 94 (95)
T ss_pred ee-ccccEEEEEE
Confidence 82 2344444444
|
Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format |
| >cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2) | Back alignment and domain information |
|---|
Probab=98.78 E-value=8.9e-08 Score=74.61 Aligned_cols=87 Identities=24% Similarity=0.208 Sum_probs=68.2
Q ss_pred CCccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCce-eeEEeeCCeeecc--CCceEE
Q psy7039 113 APRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFL-NHGWSINGQVCQI--GGRADV 189 (516)
Q Consensus 113 ~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~i~W~~~~~~~~~--~~~~~~ 189 (516)
||.| .......+.+|+.+.|.|.+. +.|.| .|.|...+..+.. ..++.+
T Consensus 2 pP~i--~~~~s~~~~~G~~~~L~C~~~--------------------------s~P~P~~i~W~w~~~~i~~~~~~r~~I 53 (98)
T cd05898 2 PPII--SSEQVQYAVRGERGKVKCFIG--------------------------STPPPDRIAWAWKENVLESGTSERYTV 53 (98)
T ss_pred CCEE--ecCceEEEeCCCcEEEEEEEc--------------------------cCCCCcEEEEEEccccccCCCCCCEEE
Confidence 4544 455667888999999999997 66665 6789888777654 357777
Q ss_pred eec----CCeeEEEeccCCCCC-CeeEEEEEEcCCCceEEEEE
Q psy7039 190 QTT----KSETVLDIPFCSRSD-TGHYSLTLENNLGTATASAH 227 (516)
Q Consensus 190 ~~~----~~~~~l~i~~~~~~d-~g~Y~c~~~~~~g~~~~~~~ 227 (516)
... +..+.|.|.++...| .|.|.|.+.|..|.....+.
T Consensus 54 ~~~~~~~g~~S~L~I~~~~~~d~~g~Y~C~a~N~~G~d~~~i~ 96 (98)
T cd05898 54 ERTSTGSGVLSTLTINNIMEADFQTHYNCTAWNSFGSGTAIIQ 96 (98)
T ss_pred EEEccCCCcEEEEEECCCccccCCcEEEEEEEeCCccceEEEE
Confidence 643 578899999998866 79999999999998876554
|
Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm. |
| >cd04967 Ig1_Contactin First Ig domain of contactin | Back alignment and domain information |
|---|
Probab=98.78 E-value=4.8e-08 Score=75.97 Aligned_cols=69 Identities=20% Similarity=0.225 Sum_probs=53.1
Q ss_pred cCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEeecCCeeEEEeccCCC-C
Q psy7039 128 AGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFCSR-S 206 (516)
Q Consensus 128 ~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~-~ 206 (516)
.|..+.|.|.+. |.|.+.++|++++..+.......+.. ....|.|.++.. +
T Consensus 18 ~~~~~~l~C~~~--------------------------g~p~p~i~W~k~~~~l~~~~~~~~~~--~~~~L~i~~~~~~~ 69 (91)
T cd04967 18 DEGKVSLNCRAR--------------------------GSPPPTYRWLMNGTEIDDEPDSRYSL--VGGNLVISNPSKAK 69 (91)
T ss_pred CCCEEEEEEeee--------------------------EcCCCEEEEEECCEECCCCCCCCEEE--ECCEEEEecCCccC
Confidence 346799999999 99999999999998885332222221 234789998874 9
Q ss_pred CCeeEEEEEEcCCCceEE
Q psy7039 207 DTGHYSLTLENNLGTATA 224 (516)
Q Consensus 207 d~g~Y~c~~~~~~g~~~~ 224 (516)
|+|.|+|.++|..|....
T Consensus 70 d~G~Y~C~a~N~~G~~~S 87 (91)
T cd04967 70 DAGRYQCLASNIVGTVLS 87 (91)
T ss_pred CCEEEEEEEEcCCCEEEe
Confidence 999999999999987543
|
Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata |
| >cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b) | Back alignment and domain information |
|---|
Probab=98.78 E-value=4.6e-08 Score=74.66 Aligned_cols=66 Identities=17% Similarity=0.348 Sum_probs=50.1
Q ss_pred CCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCC----ceEEeecCCeeEEEeccCC
Q psy7039 129 GQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGG----RADVQTTKSETVLDIPFCS 204 (516)
Q Consensus 129 g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~----~~~~~~~~~~~~l~i~~~~ 204 (516)
|+++.|+|.+. +.|.+.+.|.+++....... +..+........|.|.+++
T Consensus 1 Ge~~~l~C~~~--------------------------~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~ 54 (84)
T cd05861 1 GETITVNCIVQ--------------------------GNEVVDFSWTYPGKDIGKGIPEVEEVKVPATTLRSTLTFPHAT 54 (84)
T ss_pred CCcEEEEEEEE--------------------------CCCccEEEEEECCccCCCCceEEEEEecCCcEEEEEEEECCCC
Confidence 78899999999 88999999998765432211 1111222336799999999
Q ss_pred CCCCeeEEEEEEcCCC
Q psy7039 205 RSDTGHYSLTLENNLG 220 (516)
Q Consensus 205 ~~d~g~Y~c~~~~~~g 220 (516)
.+|+|.|.|.+.|..+
T Consensus 55 ~~DsG~Y~C~a~n~~~ 70 (84)
T cd05861 55 VEDSGTYECAAHESTQ 70 (84)
T ss_pred cCCCEEEEEEEEECcc
Confidence 9999999999998765
|
Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development. |
| >cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily | Back alignment and domain information |
|---|
Probab=98.78 E-value=4e-08 Score=74.65 Aligned_cols=73 Identities=21% Similarity=0.188 Sum_probs=53.5
Q ss_pred CCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCe---ee-ccCCce--EEeecCCeeEEEecc
Q psy7039 129 GQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQ---VC-QIGGRA--DVQTTKSETVLDIPF 202 (516)
Q Consensus 129 g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~---~~-~~~~~~--~~~~~~~~~~l~i~~ 202 (516)
|+.+.|.|.+. |.|.+.+.|+++.. .+ ...... .+. ......|.|.+
T Consensus 1 G~~v~l~C~~~--------------------------g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~-~~~~~~L~I~~ 53 (81)
T cd05765 1 GETASFHCDVT--------------------------GRPPPEITWEKQVHGKENLIMRPNHVRGNVV-VTNIGQLVIYN 53 (81)
T ss_pred CCcEEEEeecc--------------------------ccCCCcEEEEecCCCCcceeecCCcccCCEE-EccccEEEEcc
Confidence 67899999999 99999999999632 11 111111 111 12346899999
Q ss_pred CCCCCCeeEEEEEEcCCCceEEEEEe
Q psy7039 203 CSRSDTGHYSLTLENNLGTATASAHV 228 (516)
Q Consensus 203 ~~~~d~g~Y~c~~~~~~g~~~~~~~~ 228 (516)
++.+|+|.|.|.+.|..|.......+
T Consensus 54 ~~~~D~G~Y~C~a~N~~G~~~~~~~l 79 (81)
T cd05765 54 AQPQDAGLYTCTARNSGGLLRANFPL 79 (81)
T ss_pred CCcccCEEEEEEEecCCceEEEEEEE
Confidence 99999999999999999987765543
|
Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. |
| >cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins | Back alignment and domain information |
|---|
Probab=98.77 E-value=4.5e-08 Score=76.83 Aligned_cols=77 Identities=19% Similarity=0.302 Sum_probs=58.4
Q ss_pred cccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEeecCCeeEEE
Q psy7039 120 TLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTTKSETVLD 199 (516)
Q Consensus 120 ~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~ 199 (516)
.+....+.+|+++.|.|.+. |.|.+.+.|++++..+....+...... ....|.
T Consensus 5 ~P~~~~~~~g~~v~l~C~v~--------------------------g~P~p~i~W~k~g~~l~~~~~~~~~~~-~~~~l~ 57 (95)
T cd05722 5 EPSDIVAVRGGPVVLNCSAE--------------------------GEPPPKIEWKKDGVLLNLVSDERRQQL-PNGSLL 57 (95)
T ss_pred CCCCeEEcCCCCEEEeeecc--------------------------cCCCCEEEEEECCeECccccCcceEEc-cCCeEE
Confidence 44557778999999999999 999999999999998875433211111 123566
Q ss_pred eccC-----CCCCCeeEEEEEEcC-CCceE
Q psy7039 200 IPFC-----SRSDTGHYSLTLENN-LGTAT 223 (516)
Q Consensus 200 i~~~-----~~~d~g~Y~c~~~~~-~g~~~ 223 (516)
|.++ ++.|.|.|.|.+.|. .|...
T Consensus 58 i~~v~~~~~~~~D~G~Y~C~a~N~~~G~~~ 87 (95)
T cd05722 58 ITSVVHSKHNKPDEGFYQCVAQNDSLGSIV 87 (95)
T ss_pred EeeeeccCCCCCcCEEEEEEEECCccCcEE
Confidence 7666 689999999999999 88763
|
Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain. |
| >cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)) | Back alignment and domain information |
|---|
Probab=98.77 E-value=7.5e-08 Score=75.31 Aligned_cols=73 Identities=19% Similarity=0.206 Sum_probs=56.8
Q ss_pred ccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCe--------eeccCCceEEee-
Q psy7039 121 LNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQ--------VCQIGGRADVQT- 191 (516)
Q Consensus 121 ~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~--------~~~~~~~~~~~~- 191 (516)
++++.+.+|+++.|.|.+. +.|.+.+.|++.+. ......|+.+..
T Consensus 4 ~~~v~v~eG~~v~L~C~~~--------------------------~~p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~ 57 (95)
T cd07701 4 TQNVTVVEGGTANLTCRVD--------------------------QNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRA 57 (95)
T ss_pred cceEEEecCCcEEEEEEEe--------------------------cCCceEEEEeCCCCeEEEEcCcccccCCCEEEEEC
Confidence 4568899999999999999 88999999986332 222345665532
Q ss_pred cCCeeEEEeccCCCCCCeeEEEEEEcCC
Q psy7039 192 TKSETVLDIPFCSRSDTGHYSLTLENNL 219 (516)
Q Consensus 192 ~~~~~~l~i~~~~~~d~g~Y~c~~~~~~ 219 (516)
.....+|.|.+++.+|+|.|.|.+.+..
T Consensus 58 ~~~~~sL~I~~v~~~DsG~Y~C~~~t~~ 85 (95)
T cd07701 58 SWHELSISISDVSLSDEGQYTCSLFTMP 85 (95)
T ss_pred CCCcEEEEECcCCcccCEEEEEEeEeec
Confidence 2455799999999999999999998743
|
Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes. |
| >cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins | Back alignment and domain information |
|---|
Probab=98.77 E-value=2.9e-08 Score=74.33 Aligned_cols=63 Identities=17% Similarity=0.308 Sum_probs=51.8
Q ss_pred CcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCc-eeeEEeeCCeeeccCCceEEeecCCeeE
Q psy7039 119 STLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPF-LNHGWSINGQVCQIGGRADVQTTKSETV 197 (516)
Q Consensus 119 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~i~W~~~~~~~~~~~~~~~~~~~~~~~ 197 (516)
..|+...+.+|+++.|+|.+. +.|. ..+.|++++..+.. ....
T Consensus 5 ~~P~~~~v~~G~~V~L~C~~~--------------------------~~p~~~~~~W~kng~~l~~----------~~~~ 48 (78)
T cd05752 5 LDPPWTTIFQGEKVTLTCNGF--------------------------NSPEQNSTQWYHNGKLLET----------TTNS 48 (78)
T ss_pred eCCCCeEeeCCCCEEEEEeCC--------------------------CCCCCccEEEEECCEEeec----------cCCe
Confidence 345667889999999999999 7665 47999999987631 2457
Q ss_pred EEeccCCCCCCeeEEEEEEcC
Q psy7039 198 LDIPFCSRSDTGHYSLTLENN 218 (516)
Q Consensus 198 l~i~~~~~~d~g~Y~c~~~~~ 218 (516)
|.|.++ .+|+|.|+|.+.+.
T Consensus 49 l~i~~~-~~dsG~Y~C~a~~~ 68 (78)
T cd05752 49 YRIRAA-NNDSGEYRCQTQGS 68 (78)
T ss_pred EEEeec-ccCCEEeEEECCCC
Confidence 999999 99999999999764
|
Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity. |
| >cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D | Back alignment and domain information |
|---|
Probab=98.75 E-value=3.8e-08 Score=74.91 Aligned_cols=67 Identities=18% Similarity=0.186 Sum_probs=54.8
Q ss_pred ccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccC-CceEEeecCCeeEEE
Q psy7039 121 LNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIG-GRADVQTTKSETVLD 199 (516)
Q Consensus 121 ~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~-~~~~~~~~~~~~~l~ 199 (516)
|.+..+..|+++.|.|... + +.+.+.|++++..+... .++.+. ...|.
T Consensus 3 P~~~~v~~G~~v~L~C~~~--------------------------~-~~~~i~W~~ng~~i~~~~~r~~~~----~~~L~ 51 (87)
T cd05873 3 PRQRTFKLGNNAELKCSPK--------------------------S-NLARVVWKFDGKVLTPESAKYLLY----RDGLL 51 (87)
T ss_pred cceEEEECCCCEEEEEECC--------------------------C-CCCeEEEEECCEECCCCCceEEEE----CCcEE
Confidence 4568899999999999976 5 56789999999998765 344332 24699
Q ss_pred eccCCCCCCeeEEEEEEcC
Q psy7039 200 IPFCSRSDTGHYSLTLENN 218 (516)
Q Consensus 200 i~~~~~~d~g~Y~c~~~~~ 218 (516)
|.+++.+|+|.|+|.+.+.
T Consensus 52 I~nv~~~DsG~Y~C~a~e~ 70 (87)
T cd05873 52 IFNASEADAGRYQCLSVEK 70 (87)
T ss_pred EeCCCHHHCEEEEEEEEec
Confidence 9999999999999999864
|
Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas |
| >cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins | Back alignment and domain information |
|---|
Probab=98.74 E-value=5.1e-08 Score=74.76 Aligned_cols=77 Identities=25% Similarity=0.269 Sum_probs=60.8
Q ss_pred CcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEeecCCeeEE
Q psy7039 119 STLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTTKSETVL 198 (516)
Q Consensus 119 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l 198 (516)
..+..+.+.+|+.++|.|.+.+ +.|.+.+.|++++..+... . ......|
T Consensus 6 ~~p~~~~v~~G~~v~L~C~~~~-------------------------~~~~~~i~W~~~~~~~~~~--~----~~~~~~L 54 (85)
T cd05754 6 EEPRSQEVRPGADVSFICRAKS-------------------------KSPAYTLVWTRVGGGLPSR--A----MDFNGIL 54 (85)
T ss_pred cCCCceEEcCCCCEEEEEEcCC-------------------------CCCCcEEEEEECCCcCCCc--c----cccCCEE
Confidence 5566788999999999999871 3678899999987654321 1 1234589
Q ss_pred EeccCCCCCCeeEEEEEEcCCCceEEEE
Q psy7039 199 DIPFCSRSDTGHYSLTLENNLGTATASA 226 (516)
Q Consensus 199 ~i~~~~~~d~g~Y~c~~~~~~g~~~~~~ 226 (516)
.|.+++.+|+|.|.|.+.|..|......
T Consensus 55 ~I~~v~~~DsG~Y~C~a~n~~g~~~~~~ 82 (85)
T cd05754 55 TIRNVQLSDAGTYVCTGSNMLDTDEATA 82 (85)
T ss_pred EECCCCHHHCEEEEEEEeccCCeEeEEE
Confidence 9999999999999999999998877654
|
Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2. |
| >cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)) | Back alignment and domain information |
|---|
Probab=98.73 E-value=2e-07 Score=72.65 Aligned_cols=70 Identities=17% Similarity=0.258 Sum_probs=55.6
Q ss_pred cceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeee--------ccCCceEEeec-
Q psy7039 122 NDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVC--------QIGGRADVQTT- 192 (516)
Q Consensus 122 ~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~--------~~~~~~~~~~~- 192 (516)
.++.+.+|+++.|+|.+. +.|.+.+.|++++..+ ....|+.+...
T Consensus 5 ~~~tv~~G~tv~L~C~v~--------------------------g~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~ 58 (95)
T cd05882 5 QDETVAVGGTVTLKCGVK--------------------------EHDNSSLQWSNTAQQTLYFGEKRALRDNRIQLVKST 58 (95)
T ss_pred ccEEEecCCcEEEEEEEe--------------------------CCCCCeEEEeccCccEEEeCCeEEEeCCeEEEEeCC
Confidence 457899999999999999 8999999998876532 12345544322
Q ss_pred CCeeEEEeccCCCCCCeeEEEEEEc
Q psy7039 193 KSETVLDIPFCSRSDTGHYSLTLEN 217 (516)
Q Consensus 193 ~~~~~l~i~~~~~~d~g~Y~c~~~~ 217 (516)
.....|.|.+++.+|+|.|+|.+..
T Consensus 59 ~~~~~L~I~nV~~~D~G~YtC~~~t 83 (95)
T cd05882 59 PTELIISISNVQLSDEGEYTCSIFT 83 (95)
T ss_pred CceEEEEECCCCcccCEEEEEEEEe
Confidence 3467999999999999999999876
|
Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format |
| >cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin | Back alignment and domain information |
|---|
Probab=98.72 E-value=7.2e-08 Score=74.67 Aligned_cols=82 Identities=18% Similarity=0.231 Sum_probs=61.2
Q ss_pred cccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCC--ceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCC-ce
Q psy7039 362 IRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDG--RIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVG-SD 438 (516)
Q Consensus 362 ~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~--~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G-~~ 438 (516)
+..+.+..|+.+.|.|.+.+ |.+.+.|++++..+.... ...+.... ..|.|.++.. .|+|.|.|.|.|..+ ..
T Consensus 3 ~~~~~v~~g~~v~L~C~~~~-p~~~i~W~k~~~~~~~~~~~~~~~~~~~--~~L~I~~~~~-~D~G~Y~C~a~~~~~~~~ 78 (89)
T cd04979 3 EKVVTVVEGNSVFLECSPKS-NLASVVWLFQGGPLQRKEEPEERLLVTE--DGLLIRSVSP-ADAGVYTCQSVEHGFKQT 78 (89)
T ss_pred ceEEEEECCCcEEEEEeCCC-CCceEEEEECCcccccccCcCceEEEcC--CCEEEccCCH-HHCEEEEEEEecCcccee
Confidence 35567899999999999987 778999999997765432 11222222 3489999999 999999999997654 45
Q ss_pred eEEEEEEEe
Q psy7039 439 SASCKVYVV 447 (516)
Q Consensus 439 s~s~~l~v~ 447 (516)
..+..|.|.
T Consensus 79 ~~~~~l~V~ 87 (89)
T cd04979 79 LATYSLNVL 87 (89)
T ss_pred EeEEEEEEe
Confidence 666777664
|
Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization. |
| >cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins | Back alignment and domain information |
|---|
Probab=98.71 E-value=6.9e-08 Score=74.04 Aligned_cols=77 Identities=19% Similarity=0.327 Sum_probs=61.5
Q ss_pred ccccEEEEcCCeEEEEEEEee-ecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCcee
Q psy7039 361 SIRDMTVLAGEEFTITVPFSG-RPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDS 439 (516)
Q Consensus 361 ~~~~~~v~~g~~~~l~C~~~g-~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s 439 (516)
.+....+..|+.++|.|.+.+ .|.+.+.|++++..+... .. .....|.|.++.. .|+|.|.|.|.|..|...
T Consensus 7 ~p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~~--~~----~~~~~L~I~~v~~-~DsG~Y~C~a~n~~g~~~ 79 (85)
T cd05754 7 EPRSQEVRPGADVSFICRAKSKSPAYTLVWTRVGGGLPSR--AM----DFNGILTIRNVQL-SDAGTYVCTGSNMLDTDE 79 (85)
T ss_pred CCCceEEcCCCCEEEEEEcCCCCCCcEEEEEECCCcCCCc--cc----ccCCEEEECCCCH-HHCEEEEEEEeccCCeEe
Confidence 345678899999999999975 678899999988654321 11 1234799999999 999999999999999988
Q ss_pred EEEEE
Q psy7039 440 ASCKV 444 (516)
Q Consensus 440 ~s~~l 444 (516)
.++.|
T Consensus 80 ~~~~l 84 (85)
T cd05754 80 ATATL 84 (85)
T ss_pred EEEEE
Confidence 87665
|
Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2. |
| >cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins | Back alignment and domain information |
|---|
Probab=98.70 E-value=2.2e-07 Score=71.14 Aligned_cols=78 Identities=19% Similarity=0.283 Sum_probs=61.7
Q ss_pred eEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEE-eecCCeeEEEecc
Q psy7039 124 VKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADV-QTTKSETVLDIPF 202 (516)
Q Consensus 124 ~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~-~~~~~~~~l~i~~ 202 (516)
+.+..|+.+.|.|.+. +.|.+.+.|++++..+........ ........|.|.+
T Consensus 4 ~~~~~G~~~~l~C~~~--------------------------~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~l~i~~ 57 (85)
T cd05729 4 HAVPAGSTVRLKCPAS--------------------------GNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILES 57 (85)
T ss_pred eEecCCCcEEEEEEcC--------------------------CCCCCeEEEEECCEECcccCceeEEEccCcEEEEEEeE
Confidence 4567899999999999 889999999999888765443332 2233446899999
Q ss_pred CCCCCCeeEEEEEEcCCCceEEEEE
Q psy7039 203 CSRSDTGHYSLTLENNLGTATASAH 227 (516)
Q Consensus 203 ~~~~d~g~Y~c~~~~~~g~~~~~~~ 227 (516)
+..+|.|.|.|.+.|..|....+..
T Consensus 58 ~~~~d~g~Y~C~~~n~~g~~~~~~~ 82 (85)
T cd05729 58 VVPSDSGKYTCIVENKYGSINHTYK 82 (85)
T ss_pred CCcccCEEEEEEEEECCceEEEEEE
Confidence 9999999999999998887665543
|
Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin |
| >KOG0196|consensus | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.2e-06 Score=89.75 Aligned_cols=82 Identities=32% Similarity=0.491 Sum_probs=65.2
Q ss_pred CCCCCCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCCCeEE-------eEEee----cCCcEEEeCCCcC
Q psy7039 11 FDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEK-------AVVVP----AGETSCTVPGLIE 79 (516)
Q Consensus 11 ~~~p~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~~~~~-------~~~~~----~~~~~~~i~~l~~ 79 (516)
..+|++|.+|... ++.+++.|.|.+|...||-.-..|.|.+++-+..-.. +...+ -.+++.++.+|.+
T Consensus 329 T~PPSaP~nlis~-vn~Ts~~L~W~~P~d~GGR~Di~y~v~Ck~c~~~~~~C~~Cg~~V~f~P~q~gLt~~~V~v~~L~a 407 (996)
T KOG0196|consen 329 TRPPSAPRNLISN-VNGTSLILEWSPPADTGGREDITYNVICKKCGGGRGACEPCGDNVRFTPRQRGLTETSVTVSDLLA 407 (996)
T ss_pred CCCCCccceeeee-cccceEEEEecCCcccCCCcceEEEEEeeccCCCCCccccCCCCceECCCCCCcccceEEEecccc
Confidence 5789999999776 9999999999999988887788999988875431111 11111 2468899999999
Q ss_pred CCeEEEEEEEecCC
Q psy7039 80 GETYQFQVRAVNAA 93 (516)
Q Consensus 80 ~~~y~~~~~a~n~~ 93 (516)
...|.|.+.|+|..
T Consensus 408 h~~YTFeV~AvNgV 421 (996)
T KOG0196|consen 408 HTNYTFEVEAVNGV 421 (996)
T ss_pred ccccEEEEEEeecc
Confidence 99999999999955
|
|
| >cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin | Back alignment and domain information |
|---|
Probab=98.68 E-value=9e-08 Score=74.10 Aligned_cols=71 Identities=21% Similarity=0.152 Sum_probs=54.6
Q ss_pred ccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCC--ceEEeecCCeeEE
Q psy7039 121 LNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGG--RADVQTTKSETVL 198 (516)
Q Consensus 121 ~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~--~~~~~~~~~~~~l 198 (516)
+..+.+.+|+++.|.|... + |.+.+.|++++..+.... +.++... ...|
T Consensus 3 ~~~~~v~~g~~v~L~C~~~--------------------------~-p~~~i~W~k~~~~~~~~~~~~~~~~~~--~~~L 53 (89)
T cd04979 3 EKVVTVVEGNSVFLECSPK--------------------------S-NLASVVWLFQGGPLQRKEEPEERLLVT--EDGL 53 (89)
T ss_pred ceEEEEECCCcEEEEEeCC--------------------------C-CCceEEEEECCcccccccCcCceEEEc--CCCE
Confidence 4557789999999999988 6 778999999988775442 1222222 2359
Q ss_pred EeccCCCCCCeeEEEEEEcCCC
Q psy7039 199 DIPFCSRSDTGHYSLTLENNLG 220 (516)
Q Consensus 199 ~i~~~~~~d~g~Y~c~~~~~~g 220 (516)
.|.+++.+|+|.|+|.+.+..+
T Consensus 54 ~I~~~~~~D~G~Y~C~a~~~~~ 75 (89)
T cd04979 54 LIRSVSPADAGVYTCQSVEHGF 75 (89)
T ss_pred EEccCCHHHCEEEEEEEecCcc
Confidence 9999999999999999987543
|
Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization. |
| >cd04967 Ig1_Contactin First Ig domain of contactin | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.5e-07 Score=73.24 Aligned_cols=68 Identities=21% Similarity=0.350 Sum_probs=51.5
Q ss_pred cCCeEEEEEEEeeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCce-ecCCceEEEEEEEcCCCcee
Q psy7039 369 AGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAK-RATDSGSYTIQLVNTVGSDS 439 (516)
Q Consensus 369 ~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~-~~~~~g~y~c~a~n~~G~~s 439 (516)
.|..+.|.|.+.|.|.+.+.|++++..+............ ..|.|.++. . .|.|.|+|.|.|..|...
T Consensus 18 ~~~~~~l~C~~~g~p~p~i~W~k~~~~l~~~~~~~~~~~~--~~L~i~~~~~~-~d~G~Y~C~a~N~~G~~~ 86 (91)
T cd04967 18 DEGKVSLNCRARGSPPPTYRWLMNGTEIDDEPDSRYSLVG--GNLVISNPSKA-KDAGRYQCLASNIVGTVL 86 (91)
T ss_pred CCCEEEEEEeeeEcCCCEEEEEECCEECCCCCCCCEEEEC--CEEEEecCCcc-CCCEEEEEEEEcCCCEEE
Confidence 4467999999999999999999999887432222222222 358887765 5 899999999999999743
|
Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata |
| >cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.3e-07 Score=73.32 Aligned_cols=77 Identities=12% Similarity=0.072 Sum_probs=58.0
Q ss_pred eEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEeecCCeeEEEeccC
Q psy7039 124 VKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFC 203 (516)
Q Consensus 124 ~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~ 203 (516)
..+.+|....|.|...+ .+...+|.+.+.|++++..+....+... ....|.|.++
T Consensus 5 ~~~~~g~~~~l~Cp~~~---------------------~~~~~~~~p~i~Wyk~~~~i~~~~~~~~----~~~~L~I~~v 59 (92)
T cd05757 5 QILFSTKGGKIVCPDLD---------------------DFKNENTLPPVQWYKDCKLLEGDRKRFV----KGSKLLIQNV 59 (92)
T ss_pred EEEeeccCCEEECCChH---------------------HccCCCCCCcEEEeECCEECCCCccEEe----cCCEEEEeeC
Confidence 45778999999998761 0001246789999999998875443322 4569999999
Q ss_pred CCCCCeeEEEEEEcCCCceEEE
Q psy7039 204 SRSDTGHYSLTLENNLGTATAS 225 (516)
Q Consensus 204 ~~~d~g~Y~c~~~~~~g~~~~~ 225 (516)
..+|+|.|+|.+.|..+.....
T Consensus 60 ~~~DsG~YtC~~~n~~~~~~~~ 81 (92)
T cd05757 60 TEEDAGNYTCKLTFTHNGKQYN 81 (92)
T ss_pred ChhhCEEEEEEEEecCCCEEEE
Confidence 9999999999999987765444
|
Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1 |
| >cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins | Back alignment and domain information |
|---|
Probab=98.66 E-value=5.8e-08 Score=72.72 Aligned_cols=62 Identities=27% Similarity=0.409 Sum_probs=51.0
Q ss_pred ccccEEEEcCCeEEEEEEEeeecCC-ceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcC
Q psy7039 361 SIRDMTVLAGEEFTITVPFSGRPKP-TPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNT 434 (516)
Q Consensus 361 ~~~~~~v~~g~~~~l~C~~~g~p~~-~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~ 434 (516)
.++...+.+|+.++|.|.+.+.|.+ .+.|++++..+.. ....|.|.++ . +|+|.|+|.|.|.
T Consensus 6 ~P~~~~v~~G~~V~L~C~~~~~p~~~~~~W~kng~~l~~----------~~~~l~i~~~-~-~dsG~Y~C~a~~~ 68 (78)
T cd05752 6 DPPWTTIFQGEKVTLTCNGFNSPEQNSTQWYHNGKLLET----------TTNSYRIRAA-N-NDSGEYRCQTQGS 68 (78)
T ss_pred CCCCeEeeCCCCEEEEEeCCCCCCCccEEEEECCEEeec----------cCCeEEEeec-c-cCCEEeEEECCCC
Confidence 3456789999999999999998764 7999999976521 2246889899 8 9999999999875
|
Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity. |
| >cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D | Back alignment and domain information |
|---|
Probab=98.65 E-value=2.1e-07 Score=70.80 Aligned_cols=68 Identities=16% Similarity=0.250 Sum_probs=55.5
Q ss_pred cccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCC-CceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCC
Q psy7039 362 IRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPD-GRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTV 435 (516)
Q Consensus 362 ~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~-~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~ 435 (516)
+.+..+..|+++.|.|.+.+ +.+.+.|.+++..+..+ .++.+. . ..|.|.++.. .|+|.|+|.|.+..
T Consensus 3 P~~~~v~~G~~v~L~C~~~~-~~~~i~W~~ng~~i~~~~~r~~~~--~--~~L~I~nv~~-~DsG~Y~C~a~e~~ 71 (87)
T cd05873 3 PRQRTFKLGNNAELKCSPKS-NLARVVWKFDGKVLTPESAKYLLY--R--DGLLIFNASE-ADAGRYQCLSVEKS 71 (87)
T ss_pred cceEEEECCCCEEEEEECCC-CCCeEEEEECCEECCCCCceEEEE--C--CcEEEeCCCH-HHCEEEEEEEEecc
Confidence 46678999999999999864 66799999999988655 344332 2 3599999999 99999999999875
|
Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas |
| >cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4 | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.2e-07 Score=73.52 Aligned_cols=74 Identities=18% Similarity=0.205 Sum_probs=55.8
Q ss_pred eEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeec--------------cCCceEE
Q psy7039 124 VKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQ--------------IGGRADV 189 (516)
Q Consensus 124 ~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~--------------~~~~~~~ 189 (516)
+.+.+|+.++|.|.+. +.+.+.+.|++++.... ..+|+..
T Consensus 2 v~~~~G~~VtL~C~~s--------------------------~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~ 55 (94)
T cd07690 2 VLGKKGDTAELPCTAS--------------------------QKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADS 55 (94)
T ss_pred eEeeCCCCEEEEEEeC--------------------------CCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCce
Confidence 5678999999999999 88889999986553221 1234444
Q ss_pred ee---cCCeeEEEeccCCCCCCeeEEEEEEcCCCceE
Q psy7039 190 QT---TKSETVLDIPFCSRSDTGHYSLTLENNLGTAT 223 (516)
Q Consensus 190 ~~---~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~ 223 (516)
.. ..+...|.|.+++.+|+|.|.|.+.|..+..+
T Consensus 56 ~~~~~~~g~~~L~I~~l~~sDsgtY~C~v~~~~~~~~ 92 (94)
T cd07690 56 RRNLWDQGSFPLIIKNLKIEDSDTYICEVEDKKEEVE 92 (94)
T ss_pred ecccCCCCeEEEEECCCCHHHCEEEEEEECCccceEE
Confidence 33 34457899999999999999999988665543
|
Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy. |
| >cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins | Back alignment and domain information |
|---|
Probab=98.65 E-value=7.9e-08 Score=74.29 Aligned_cols=75 Identities=25% Similarity=0.267 Sum_probs=57.7
Q ss_pred cccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeee--ccCCceEEeecCCeeE
Q psy7039 120 TLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVC--QIGGRADVQTTKSETV 197 (516)
Q Consensus 120 ~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~--~~~~~~~~~~~~~~~~ 197 (516)
....+.+.+|+.+.|.|.... +.|.+.+.|++++..+ ..+.|..+ ....+.
T Consensus 9 ~~~~~~v~eG~~~~L~C~pP~-------------------------g~P~p~~~W~k~~~~~~~~~d~r~~~--~~~~G~ 61 (96)
T cd05727 9 ERDEVKVKEGWGVVLFCDPPP-------------------------HYPDLSYRWLLNEFPNFIPEDGRRFV--SQTNGN 61 (96)
T ss_pred CcCceeeeeCCcEEEeeCCCC-------------------------CCCCCEEEEEECCcccccccCCCeEE--eCCCCc
Confidence 334577899999999997662 8899999999998754 22333322 334669
Q ss_pred EEeccCCCCCCeeEEEEEEcCCCc
Q psy7039 198 LDIPFCSRSDTGHYSLTLENNLGT 221 (516)
Q Consensus 198 l~i~~~~~~d~g~Y~c~~~~~~g~ 221 (516)
|.|.+++.+|+|.|.|.++|....
T Consensus 62 L~fs~v~~~D~g~Y~C~A~n~~~~ 85 (96)
T cd05727 62 LYIAKVEASDRGNYSCFVSSPSST 85 (96)
T ss_pred EEEeecCHhhCceeEEEEEecccC
Confidence 999999999999999999986543
|
Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes. |
| >cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.6e-07 Score=72.78 Aligned_cols=77 Identities=14% Similarity=0.138 Sum_probs=59.5
Q ss_pred cEEEEcCCeEEEEEEEeee-----cCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCce
Q psy7039 364 DMTVLAGEEFTITVPFSGR-----PKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSD 438 (516)
Q Consensus 364 ~~~v~~g~~~~l~C~~~g~-----p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~ 438 (516)
...+..|....|.|...+. |.|.+.|++++..+....... . ....|.|.++.. +|+|.|+|.|.|..|..
T Consensus 4 ~~~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~~~~~~-~---~~~~L~I~~v~~-~DsG~YtC~~~n~~~~~ 78 (92)
T cd05757 4 KQILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEGDRKRF-V---KGSKLLIQNVTE-EDAGNYTCKLTFTHNGK 78 (92)
T ss_pred eEEEeeccCCEEECCChHHccCCCCCCcEEEeECCEECCCCccEE-e---cCCEEEEeeCCh-hhCEEEEEEEEecCCCE
Confidence 3567889999999987532 567999999999887544332 2 335799999999 99999999999998886
Q ss_pred eEEEEEE
Q psy7039 439 SASCKVY 445 (516)
Q Consensus 439 s~s~~l~ 445 (516)
...+..+
T Consensus 79 ~~~~t~t 85 (92)
T cd05757 79 QYNVTRT 85 (92)
T ss_pred EEEEEEE
Confidence 5554333
|
Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1 |
| >cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) | Back alignment and domain information |
|---|
Probab=98.63 E-value=5.3e-07 Score=69.76 Aligned_cols=84 Identities=24% Similarity=0.370 Sum_probs=68.0
Q ss_pred ccEEEEcCCeEEEEEEEeeecCCc-eEEEECCeecCCCCceEEEEcC-----CeEEEEEcCceecCCceEEEEEEEcCCC
Q psy7039 363 RDMTVLAGEEFTITVPFSGRPKPT-PIWTVNGDEVSPDGRIKFETSE-----NQTIYRNKSAKRATDSGSYTIQLVNTVG 436 (516)
Q Consensus 363 ~~~~v~~g~~~~l~C~~~g~p~~~-i~W~~~~~~l~~~~~~~~~~~~-----~~~~l~i~~~~~~~~~g~y~c~a~n~~G 436 (516)
..+.+..|+.+.|.|.+++.|+|. +.|.+++..+.....-...... ..+.|.+..+.. .+.|.|+|.|.|..+
T Consensus 11 ~~~~v~~gE~~~L~V~ieAYP~p~~~~W~~~~~~l~~~~~~~~~~~~~~~~rY~S~L~L~Rlk~-~E~G~YTf~a~N~~~ 89 (101)
T cd05860 11 TTIFVNAGENLDLIVEYEAYPKPEHQQWIYMNRTLTNTSDHYVKSRNESNNRYVSELHLTRLKG-TEGGTYTFLVSNSDA 89 (101)
T ss_pred ceEEEECCCCEEEEEEEEeCCCCeeeEEEcCCcccCccccceeEEeccCceEEEEEEEEeecCh-hhCcEEEEEEECCCC
Confidence 457899999999999999999996 9999998766433321112211 236799999999 999999999999999
Q ss_pred ceeEEEEEEEe
Q psy7039 437 SDSASCKVYVV 447 (516)
Q Consensus 437 ~~s~s~~l~v~ 447 (516)
..+.++.|.|.
T Consensus 90 ~~s~tF~l~v~ 100 (101)
T cd05860 90 SASVTFNVYVN 100 (101)
T ss_pred eEEEEEEEEEe
Confidence 99999998875
|
Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction. |
| >smart00409 IG Immunoglobulin | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.1e-06 Score=66.91 Aligned_cols=82 Identities=29% Similarity=0.484 Sum_probs=67.6
Q ss_pred cEEEEcCCeEEEEEEEeeecCCceEEEEC-CeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEEE
Q psy7039 364 DMTVLAGEEFTITVPFSGRPKPTPIWTVN-GDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASC 442 (516)
Q Consensus 364 ~~~v~~g~~~~l~C~~~g~p~~~i~W~~~-~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~ 442 (516)
...+..|+++.|.|.+.+.+.+.+.|.++ +..+....++..........|.|.++.. .|.|.|.|.+.+..+......
T Consensus 3 ~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~-~d~G~Y~C~v~~~~~~~~~~~ 81 (86)
T smart00409 3 SVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTP-EDSGTYTCAATNSSGSASSTT 81 (86)
T ss_pred cEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeecc-ccCeEEEEEEEcCCCeEEEEE
Confidence 45678999999999999888889999998 7776655666666655567899999999 999999999999888876666
Q ss_pred EEEE
Q psy7039 443 KVYV 446 (516)
Q Consensus 443 ~l~v 446 (516)
.|.|
T Consensus 82 ~l~V 85 (86)
T smart00409 82 TLTV 85 (86)
T ss_pred EEEE
Confidence 6655
|
|
| >smart00410 IG_like Immunoglobulin like | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.1e-06 Score=66.91 Aligned_cols=82 Identities=29% Similarity=0.484 Sum_probs=67.6
Q ss_pred cEEEEcCCeEEEEEEEeeecCCceEEEEC-CeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEEE
Q psy7039 364 DMTVLAGEEFTITVPFSGRPKPTPIWTVN-GDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASC 442 (516)
Q Consensus 364 ~~~v~~g~~~~l~C~~~g~p~~~i~W~~~-~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~ 442 (516)
...+..|+++.|.|.+.+.+.+.+.|.++ +..+....++..........|.|.++.. .|.|.|.|.+.+..+......
T Consensus 3 ~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~-~d~G~Y~C~v~~~~~~~~~~~ 81 (86)
T smart00410 3 SVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTP-EDSGTYTCAATNSSGSASSTT 81 (86)
T ss_pred cEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeecc-ccCeEEEEEEEcCCCeEEEEE
Confidence 45678999999999999888889999998 7776655666666655567899999999 999999999999888876666
Q ss_pred EEEE
Q psy7039 443 KVYV 446 (516)
Q Consensus 443 ~l~v 446 (516)
.|.|
T Consensus 82 ~l~V 85 (86)
T smart00410 82 TLTV 85 (86)
T ss_pred EEEE
Confidence 6655
|
IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG. |
| >cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.7e-07 Score=72.23 Aligned_cols=77 Identities=13% Similarity=0.103 Sum_probs=59.4
Q ss_pred ccccCcccceEEecCCeEEEEEe-eeeccccccCccccccccccCccceeecCcCceeeEEeeCCeee-ccCCceEEeec
Q psy7039 115 RIDRSTLNDVKIKAGQSFSFDVK-EFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVC-QIGGRADVQTT 192 (516)
Q Consensus 115 ~~~~~~~~~~~v~~g~~~~l~C~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~-~~~~~~~~~~~ 192 (516)
.+.....+.+.+.+|+++.|.|. .. |.|.+.|.|+.++... ..+.|+.+.
T Consensus 4 ~~~~~~~~~v~V~eG~~~~L~C~pP~--------------------------g~P~P~i~W~~~~~~~i~~~~Ri~~~-- 55 (95)
T cd05845 4 KWPKEKIRPVEVEEGDSVVLPCNPPK--------------------------SAVPLRIYWMNSDLLHITQDERVSMG-- 55 (95)
T ss_pred cCCccccceeEEecCCCEEEEecCCC--------------------------CCCCCEEEEECCCCccccccccEEEC--
Confidence 33335567799999999999997 56 8999999999876543 334444432
Q ss_pred CCeeEEEeccCCCCCCe-eEEEEEEcCCC
Q psy7039 193 KSETVLDIPFCSRSDTG-HYSLTLENNLG 220 (516)
Q Consensus 193 ~~~~~l~i~~~~~~d~g-~Y~c~~~~~~g 220 (516)
..+.|.|.+++..|.| .|.|.+.+...
T Consensus 56 -~~GnL~fs~v~~~D~g~~Y~C~a~~~~~ 83 (95)
T cd05845 56 -QNGNLYFANVEEQDSHPDYICHAHFPGL 83 (95)
T ss_pred -CCceEEEEEEehhhCCCCeEEEEEcccc
Confidence 3479999999999999 79999998653
|
Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. |
| >cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM) | Back alignment and domain information |
|---|
Probab=98.57 E-value=2.1e-07 Score=70.20 Aligned_cols=54 Identities=22% Similarity=0.320 Sum_probs=41.0
Q ss_pred CcCceeeEEeeCCeeec--------cCCceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCce
Q psy7039 166 SEPFLNHGWSINGQVCQ--------IGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTA 222 (516)
Q Consensus 166 ~~p~~~i~W~~~~~~~~--------~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~ 222 (516)
|.|.|.+.|++++.... ...++.+. ...+|.|.++..+|+|.|.|.+.|..|..
T Consensus 9 G~P~P~v~W~~~~~~~~~~~~~~~~~~~r~~~~---~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~ 70 (79)
T cd05734 9 GYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQLL---SNGSLLIKHVLEEDSGYYLCKVSNDVGAD 70 (79)
T ss_pred EeCCCEEEEEECCCccccccccccccCCCEEEe---cCCeEEECcCCcccCEEEEEEEEeCCCCC
Confidence 99999999999643221 12333332 23689999999999999999999998865
|
Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion. |
| >smart00410 IG_like Immunoglobulin like | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.6e-06 Score=65.95 Aligned_cols=77 Identities=25% Similarity=0.429 Sum_probs=63.1
Q ss_pred ceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeC-CeeeccCCceEEeecCCeeEEEec
Q psy7039 123 DVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSIN-GQVCQIGGRADVQTTKSETVLDIP 201 (516)
Q Consensus 123 ~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~-~~~~~~~~~~~~~~~~~~~~l~i~ 201 (516)
.+.+..|+.+.|.|.+. +.+.+.+.|+++ +..+....++..........|.|.
T Consensus 3 ~~~~~~g~~~~l~C~~~--------------------------~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~ 56 (86)
T smart00410 3 SVTVKEGESVTLSCEVS--------------------------GSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTIS 56 (86)
T ss_pred cEEEeCCCeEEEEEEEc--------------------------cCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEE
Confidence 46678999999999999 777889999998 777765666666655557899999
Q ss_pred cCCCCCCeeEEEEEEcCCCceEEE
Q psy7039 202 FCSRSDTGHYSLTLENNLGTATAS 225 (516)
Q Consensus 202 ~~~~~d~g~Y~c~~~~~~g~~~~~ 225 (516)
++...|+|.|.|.+.+..+.....
T Consensus 57 ~~~~~d~G~Y~C~v~~~~~~~~~~ 80 (86)
T smart00410 57 NVTPEDSGTYTCAATNSSGSASST 80 (86)
T ss_pred eeccccCeEEEEEEEcCCCeEEEE
Confidence 999999999999999776665443
|
IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG. |
| >smart00409 IG Immunoglobulin | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.6e-06 Score=65.95 Aligned_cols=77 Identities=25% Similarity=0.429 Sum_probs=63.1
Q ss_pred ceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeC-CeeeccCCceEEeecCCeeEEEec
Q psy7039 123 DVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSIN-GQVCQIGGRADVQTTKSETVLDIP 201 (516)
Q Consensus 123 ~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~-~~~~~~~~~~~~~~~~~~~~l~i~ 201 (516)
.+.+..|+.+.|.|.+. +.+.+.+.|+++ +..+....++..........|.|.
T Consensus 3 ~~~~~~g~~~~l~C~~~--------------------------~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~ 56 (86)
T smart00409 3 SVTVKEGESVTLSCEVS--------------------------GSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTIS 56 (86)
T ss_pred cEEEeCCCeEEEEEEEc--------------------------cCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEE
Confidence 46678999999999999 777889999998 777765666666655557899999
Q ss_pred cCCCCCCeeEEEEEEcCCCceEEE
Q psy7039 202 FCSRSDTGHYSLTLENNLGTATAS 225 (516)
Q Consensus 202 ~~~~~d~g~Y~c~~~~~~g~~~~~ 225 (516)
++...|+|.|.|.+.+..+.....
T Consensus 57 ~~~~~d~G~Y~C~v~~~~~~~~~~ 80 (86)
T smart00409 57 NVTPEDSGTYTCAATNSSGSASST 80 (86)
T ss_pred eeccccCeEEEEEEEcCCCeEEEE
Confidence 999999999999999776665443
|
|
| >smart00408 IGc2 Immunoglobulin C-2 Type | Back alignment and domain information |
|---|
Probab=98.52 E-value=3.9e-07 Score=64.88 Aligned_cols=63 Identities=27% Similarity=0.419 Sum_probs=50.6
Q ss_pred cCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEeecCCeeEEEeccCCCCC
Q psy7039 128 AGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFCSRSD 207 (516)
Q Consensus 128 ~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d 207 (516)
+|+.+.|.|.+. +.+.+.+.|++++..+. ..... ......|.|.+++..|
T Consensus 1 ~g~~~~l~C~~~--------------------------~~~~~~v~W~~~~~~~~--~~~~~--~~~~~~L~i~~~~~~d 50 (63)
T smart00408 1 EGQSVTLTCPAE--------------------------GDPVPNITWLKDGKPLP--ESNRL--SASGSTLTIKSVSLED 50 (63)
T ss_pred CCceEEEEeeCc--------------------------cCCCCeEEEEECCEECC--CCCEE--ecCCcEEEEeeCCccc
Confidence 478899999988 88889999999888776 22222 3345689999999999
Q ss_pred CeeEEEEEEcCCC
Q psy7039 208 TGHYSLTLENNLG 220 (516)
Q Consensus 208 ~g~Y~c~~~~~~g 220 (516)
+|.|+|.+.|..|
T Consensus 51 ~G~Y~C~~~n~~g 63 (63)
T smart00408 51 SGEYTCVAENSAG 63 (63)
T ss_pred CEEEEEEEecCCC
Confidence 9999999988654
|
|
| >cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively) | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.1e-06 Score=68.96 Aligned_cols=83 Identities=23% Similarity=0.324 Sum_probs=60.1
Q ss_pred cccEEEEcCCeEEEEEEEeeecCCceEEEECCee--------cCCCCceEEEE-cCCeEEEEEcCceecCCceEEEEEEE
Q psy7039 362 IRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDE--------VSPDGRIKFET-SENQTIYRNKSAKRATDSGSYTIQLV 432 (516)
Q Consensus 362 ~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~--------l~~~~~~~~~~-~~~~~~l~i~~~~~~~~~g~y~c~a~ 432 (516)
.+++.+.+|+.+.|.|.+.+.+.+.+.|++.+.. ...+.++.... ......|.|.++.. .|+|.|.|.+.
T Consensus 4 ~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~-~DsG~Y~C~~~ 82 (95)
T cd05717 4 TQDVTVVEGGTATLKCRVKNNDNSSLQWSNPNQQTLYFNDKRALRDNRIQLVNFSANELSISISNVSL-SDEGRYTCSLY 82 (95)
T ss_pred CCcEEEcCCCCEEEEEEECCCCCceEEEeCCCCcEEEeccccccccCcEEEEcCCCCeeEEEEccCCc-ccCEEEEEEEe
Confidence 3567899999999999998888889999752221 01234555532 23446799999999 99999999999
Q ss_pred cCCCceeEEEEEEE
Q psy7039 433 NTVGSDSASCKVYV 446 (516)
Q Consensus 433 n~~G~~s~s~~l~v 446 (516)
+... .+.++.|+|
T Consensus 83 ~~~~-~~~~~~~~v 95 (95)
T cd05717 83 TMPV-QTAKATVTV 95 (95)
T ss_pred cCCC-ceEEEEEEC
Confidence 8753 455555554
|
Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form |
| >cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively) | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.3e-06 Score=68.40 Aligned_cols=72 Identities=21% Similarity=0.256 Sum_probs=53.2
Q ss_pred cceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeee--------ccCCceEEee-c
Q psy7039 122 NDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVC--------QIGGRADVQT-T 192 (516)
Q Consensus 122 ~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~--------~~~~~~~~~~-~ 192 (516)
+.+.+.+|+++.|.|.+. +.+.+.+.|++.+..+ ....|+.+.. .
T Consensus 5 ~~~~v~~G~~v~L~C~~~--------------------------~~~~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~~ 58 (95)
T cd05717 5 QDVTVVEGGTATLKCRVK--------------------------NNDNSSLQWSNPNQQTLYFNDKRALRDNRIQLVNFS 58 (95)
T ss_pred CcEEEcCCCCEEEEEEEC--------------------------CCCCceEEEeCCCCcEEEeccccccccCcEEEEcCC
Confidence 457789999999999998 6677788887532211 1234665532 2
Q ss_pred CCeeEEEeccCCCCCCeeEEEEEEcCC
Q psy7039 193 KSETVLDIPFCSRSDTGHYSLTLENNL 219 (516)
Q Consensus 193 ~~~~~l~i~~~~~~d~g~Y~c~~~~~~ 219 (516)
.....|.|.+++.+|+|.|.|.+.+..
T Consensus 59 ~~~~~L~I~~v~~~DsG~Y~C~~~~~~ 85 (95)
T cd05717 59 ANELSISISNVSLSDEGRYTCSLYTMP 85 (95)
T ss_pred CCeeEEEEccCCcccCEEEEEEEecCC
Confidence 345689999999999999999998654
|
Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form |
| >smart00408 IGc2 Immunoglobulin C-2 Type | Back alignment and domain information |
|---|
Probab=98.48 E-value=5.1e-07 Score=64.29 Aligned_cols=63 Identities=30% Similarity=0.490 Sum_probs=50.7
Q ss_pred cCCeEEEEEEEeeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCC
Q psy7039 369 AGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVG 436 (516)
Q Consensus 369 ~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G 436 (516)
+|+.+.|.|.+.+.+.+.+.|++++..+. .... .......|.|.++.. .|.|.|+|.+.|..|
T Consensus 1 ~g~~~~l~C~~~~~~~~~v~W~~~~~~~~--~~~~--~~~~~~~L~i~~~~~-~d~G~Y~C~~~n~~g 63 (63)
T smart00408 1 EGQSVTLTCPAEGDPVPNITWLKDGKPLP--ESNR--LSASGSTLTIKSVSL-EDSGEYTCVAENSAG 63 (63)
T ss_pred CCceEEEEeeCccCCCCeEEEEECCEECC--CCCE--EecCCcEEEEeeCCc-ccCEEEEEEEecCCC
Confidence 47889999999888889999999988775 1211 223345799999999 999999999999865
|
|
| >cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins | Back alignment and domain information |
|---|
Probab=98.48 E-value=3.5e-07 Score=69.50 Aligned_cols=73 Identities=18% Similarity=0.143 Sum_probs=55.8
Q ss_pred cEEEEcCCeEEEEEEEee-ecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCce-eEE
Q psy7039 364 DMTVLAGEEFTITVPFSG-RPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSD-SAS 441 (516)
Q Consensus 364 ~~~v~~g~~~~l~C~~~g-~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~-s~s 441 (516)
...+.+|+.++|.|.+.+ .+.+.+.|++++..+.. ......|.|..+.. .|+|.|+|.|.|..|.. +..
T Consensus 8 ~~~V~~G~~vtL~C~~~~~~~~~~~~w~k~g~~~~~--------~~~~~~l~I~~~~~-~dsG~Y~C~~~~~~~~~~s~~ 78 (83)
T cd05753 8 SRVVFEGEPLVLRCHGWKNKPVYKVTYYRDGKAKKY--------SHSNSNLSIPQATL-SDSGSYHCSGIIGSYDYSSEP 78 (83)
T ss_pred cceecCCCCEEEEeeCCCCCcceEEEEEECCeEccc--------cCCCceEEECccCH-HHCEEEEEEEEeCCceecCCC
Confidence 346889999999999854 55668999999975531 11235799999999 99999999999999863 444
Q ss_pred EEEE
Q psy7039 442 CKVY 445 (516)
Q Consensus 442 ~~l~ 445 (516)
..|+
T Consensus 79 ~~i~ 82 (83)
T cd05753 79 VSIT 82 (83)
T ss_pred EEEE
Confidence 4443
|
Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity. |
| >cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain | Back alignment and domain information |
|---|
Probab=98.47 E-value=2.3e-06 Score=72.42 Aligned_cols=116 Identities=10% Similarity=0.133 Sum_probs=72.3
Q ss_pred EEEeCCCcCCCeEEEEEEEecCCCCCCCCCCCcceEeccCCCCCccccCcccceEEecCCeEEEEEeeeeccccccCccc
Q psy7039 71 SCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLR 150 (516)
Q Consensus 71 ~~~i~~l~~~~~y~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~ 150 (516)
+|+|.+++..|.|.|.|.+.+..|... ....+.+. .+|.+. ..+.......|+.+.|.|.+.
T Consensus 2 sL~i~~v~~~D~G~Y~C~~~~~~~~~~---~~~~l~v~---~~P~v~-~~~~~~~~~~~~~~~L~C~a~----------- 63 (139)
T cd05771 2 SLTLPGLTVHDEGTYICSVSTPPHQAQ---QIIQLSVS---EPPRVR-LSLEKLVSMIEEPQTLICHIA----------- 63 (139)
T ss_pred eEEECCCCHHHCEEEEEEEEccCccee---eEEEEEEe---cCCceE-EeCCCceeecCCcEEEEEEEC-----------
Confidence 689999999999999999987544322 22222222 466665 233344445788999999999
Q ss_pred cccccccCccceeecCc-Cc-eeeEEeeCCeeecc-----CCc----eEEeecCC---eeEEEeccCCCCCCeeEEEEEE
Q psy7039 151 ALGVRANSTKGWVKLSE-PF-LNHGWSINGQVCQI-----GGR----ADVQTTKS---ETVLDIPFCSRSDTGHYSLTLE 216 (516)
Q Consensus 151 ~~~~~~~~~~~~~~~~~-p~-~~i~W~~~~~~~~~-----~~~----~~~~~~~~---~~~l~i~~~~~~d~g~Y~c~~~ 216 (516)
+. |. +.|.|++++..... ... .....++. .+.|.|.....++...|.|.+.
T Consensus 64 ---------------g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~~~~~g~~ytC~V~ 128 (139)
T cd05771 64 ---------------GYYPLDVQVEWTREPPGDSPPPVSLSNVSFSSHRQHQDGTYSLSSHLTLEPGTEDAGATYTCRVS 128 (139)
T ss_pred ---------------CCCCCCeEEEEEECCCCCccceeccCCeEecceEeCCCCCEEEEEEEEecCCccCCCCEEEEEEE
Confidence 63 54 68999998754211 111 11111221 2466666555555668999987
Q ss_pred cCC
Q psy7039 217 NNL 219 (516)
Q Consensus 217 ~~~ 219 (516)
+..
T Consensus 129 H~~ 131 (139)
T cd05771 129 HVS 131 (139)
T ss_pred cCC
Confidence 643
|
IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal. |
| >PHA03376 BARF1; Provisional | Back alignment and domain information |
|---|
Probab=98.47 E-value=2.2e-06 Score=72.61 Aligned_cols=129 Identities=11% Similarity=0.084 Sum_probs=82.7
Q ss_pred ceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeec-----cCCceEEeecCCeeE
Q psy7039 123 DVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQ-----IGGRADVQTTKSETV 197 (516)
Q Consensus 123 ~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~-----~~~~~~~~~~~~~~~ 197 (516)
.+.+..|+.+.|.|... |....++|.+.|++.+.....+.-++++.... ...+..+....++.+
T Consensus 20 pVta~VGEda~LsC~ln-----------p~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~~gnvs 88 (221)
T PHA03376 20 AVTAFLGERVTLTSYWR-----------RVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFF 88 (221)
T ss_pred chhheeCCcEEEEeccc-----------CccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEecCCeEE
Confidence 46778899999999987 44445888888888542123333233322221 123444445568889
Q ss_pred EEeccCCCCCCeeEEEEEEcCCCceEEEEEeecee---eeec----cccCCceEEEEEEEEccCCCCCceecccc
Q psy7039 198 LDIPFCSRSDTGHYSLTLENNLGTATASAHVTGTE---FTDN----NVHEGKAYEYRVSAVNAAGTEKPKISLDA 265 (516)
Q Consensus 198 l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~~~~~---~~~~----~l~~g~~~~~~~~~~~~~g~p~p~i~W~~ 265 (516)
|.|.+++.+|.|.|+|..+..........+..... ..+. .........++|. ..|.|.|.+.|..
T Consensus 89 LvI~~l~lSDdGtY~C~fQkge~~~~k~ehLt~V~~~~Lsv~a~~~dFp~~~~~~i~C~---sggfP~P~~~Wle 160 (221)
T PHA03376 89 LVVTAANISHDGNYLCRMKLGETEVTKQEHLSVVKPLTLSVHSERSQFPDFSVLTVTCT---VNAFPHPHVQWLM 160 (221)
T ss_pred EEEEeeeecCCceEEEEEEcCCCceeeeeeeeeeecceEEEEeccccCCCCCeeEEEEe---cCCcCCchheecc
Confidence 99999999999999999987665554444333222 1111 2222445566676 4999999999964
|
|
| >cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) | Back alignment and domain information |
|---|
Probab=98.45 E-value=1e-06 Score=67.49 Aligned_cols=77 Identities=18% Similarity=0.167 Sum_probs=56.2
Q ss_pred CCeEEEEEEEeeecCC--ceEEEECCeecCCC---C--c-eEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEE
Q psy7039 370 GEEFTITVPFSGRPKP--TPIWTVNGDEVSPD---G--R-IKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSAS 441 (516)
Q Consensus 370 g~~~~l~C~~~g~p~~--~i~W~~~~~~l~~~---~--~-~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s 441 (516)
|+++.|.|.+.+.+.+ .+.|...+...... . + .........+.|.|.++.. .|+|.|+|.|.|..|....+
T Consensus 1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~-~DsG~Y~C~a~n~~~~~~~~ 79 (86)
T cd05862 1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENRRSLQEHTELSSTLTIENVTL-SDLGRYTCTASSGQMIAKNS 79 (86)
T ss_pred CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceecccccccccccceeeeEEEEecCCc-ccCEEEEEEEeecceEeccc
Confidence 6789999999876644 77998877543110 1 1 1101122346899999999 99999999999999988888
Q ss_pred EEEEEe
Q psy7039 442 CKVYVV 447 (516)
Q Consensus 442 ~~l~v~ 447 (516)
..|.|.
T Consensus 80 t~~~V~ 85 (86)
T cd05862 80 TIVIVH 85 (86)
T ss_pred EEEEEe
Confidence 888775
|
IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge |
| >cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)) | Back alignment and domain information |
|---|
Probab=98.45 E-value=3e-06 Score=65.62 Aligned_cols=78 Identities=15% Similarity=0.137 Sum_probs=53.8
Q ss_pred cceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEee-cCCeeEEEe
Q psy7039 122 NDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQT-TKSETVLDI 200 (516)
Q Consensus 122 ~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~-~~~~~~l~i 200 (516)
+++.+.+|+++.|.|.+.+ ..+..+.|.+.+ ..+.|+.+.... .+.|+.... .+...+|.|
T Consensus 5 ~nvtv~~G~ta~L~C~v~~--------------~~~~~v~w~~~~---~~~i~~~~~~~~-~d~Rf~~~~~~~~~~tL~I 66 (95)
T cd05881 5 EDVTVVEGEVAIISCRVKN--------------NDDSVIQLLNPN---RQTIYFRDVRPL-KDSRFQLVNFSSNELRVSL 66 (95)
T ss_pred CceEEcCCCcEEEEEEEcc--------------CCccEEEEEecC---CcEEEecCcccc-CCcCEEEEeCCCCEEEEEE
Confidence 5588999999999999991 002223444322 334444443333 567887664 455678999
Q ss_pred ccCCCCCCeeEEEEEEc
Q psy7039 201 PFCSRSDTGHYSLTLEN 217 (516)
Q Consensus 201 ~~~~~~d~g~Y~c~~~~ 217 (516)
.+++.+|+|.|.|.+..
T Consensus 67 ~~vq~~D~G~Y~Cqv~t 83 (95)
T cd05881 67 SNVSLSDEGRYFCQLYT 83 (95)
T ss_pred CcCCcccCEEEEEEEEc
Confidence 99999999999999875
|
Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a |
| >PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs | Back alignment and domain information |
|---|
Probab=98.44 E-value=6.8e-07 Score=64.26 Aligned_cols=61 Identities=25% Similarity=0.371 Sum_probs=46.4
Q ss_pred CCeEEEEEee-eeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEeecCCe--eEEEeccCCC
Q psy7039 129 GQSFSFDVKE-FRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTTKSE--TVLDIPFCSR 205 (516)
Q Consensus 129 g~~~~l~C~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~--~~l~i~~~~~ 205 (516)
|+.+.|.|.+ . +.+...+.|.+++................. ..|.|.+++.
T Consensus 1 G~~v~L~C~~~~--------------------------~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~ 54 (64)
T PF00047_consen 1 GSSVTLTCSVSS--------------------------GPPPTTVTWSKNGQSLPEGSTTNRSTNSVSSTSRLTISNVTP 54 (64)
T ss_dssp TSEEEEEEEEEE--------------------------SSSTSEEEEEETTTTTSEEEEEEEEETTTEEEEEEEESSCTG
T ss_pred CCeEEEEeecCC--------------------------CCCCcEEEEEECCccccCcceeEeecccceeeeEEEEccCCH
Confidence 7899999999 6 788899999998876654433333222221 1399999999
Q ss_pred CCCeeEEEEE
Q psy7039 206 SDTGHYSLTL 215 (516)
Q Consensus 206 ~d~g~Y~c~~ 215 (516)
+|+|.|+|.+
T Consensus 55 ~d~G~Y~C~v 64 (64)
T PF00047_consen 55 EDSGTYTCVV 64 (64)
T ss_dssp GGTEEEEEEE
T ss_pred HHCEEEEEEC
Confidence 9999999985
|
; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H .... |
| >cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4 | Back alignment and domain information |
|---|
Probab=98.44 E-value=7.3e-07 Score=69.08 Aligned_cols=72 Identities=13% Similarity=0.092 Sum_probs=54.3
Q ss_pred EEEEcCCeEEEEEEEeeecCCceEEEECCeecC--------------CCCceEEEE---cCCeEEEEEcCceecCCceEE
Q psy7039 365 MTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVS--------------PDGRIKFET---SENQTIYRNKSAKRATDSGSY 427 (516)
Q Consensus 365 ~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~--------------~~~~~~~~~---~~~~~~l~i~~~~~~~~~g~y 427 (516)
+.+..|++++|.|.+.+.+.+.+.|++++.... ...++.... ..+...|+|.++.. .|+|.|
T Consensus 2 v~~~~G~~VtL~C~~s~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~-sDsgtY 80 (94)
T cd07690 2 VLGKKGDTAELPCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKI-EDSDTY 80 (94)
T ss_pred eEeeCCCCEEEEEEeCCCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCCH-HHCEEE
Confidence 356889999999999998889999997653321 122333332 33456799999999 999999
Q ss_pred EEEEEcCCCc
Q psy7039 428 TIQLVNTVGS 437 (516)
Q Consensus 428 ~c~a~n~~G~ 437 (516)
.|.+.|..+.
T Consensus 81 ~C~v~~~~~~ 90 (94)
T cd07690 81 ICEVEDKKEE 90 (94)
T ss_pred EEEECCccce
Confidence 9999998764
|
Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy. |
| >cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins | Back alignment and domain information |
|---|
Probab=98.42 E-value=6.6e-07 Score=69.17 Aligned_cols=74 Identities=15% Similarity=0.172 Sum_probs=57.1
Q ss_pred cccEEEEcCCeEEEEEEE-eeecCCceEEEECCeec--CCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCce
Q psy7039 362 IRDMTVLAGEEFTITVPF-SGRPKPTPIWTVNGDEV--SPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSD 438 (516)
Q Consensus 362 ~~~~~v~~g~~~~l~C~~-~g~p~~~i~W~~~~~~l--~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~ 438 (516)
.....+.+|+.+.|.|.. .|.|.+.+.|.+++..+ ..+.+..+. ...+.|.|.++.. .|.|.|.|.|+|.....
T Consensus 10 ~~~~~v~eG~~~~L~C~pP~g~P~p~~~W~k~~~~~~~~~d~r~~~~--~~~G~L~fs~v~~-~D~g~Y~C~A~n~~~~~ 86 (96)
T cd05727 10 RDEVKVKEGWGVVLFCDPPPHYPDLSYRWLLNEFPNFIPEDGRRFVS--QTNGNLYIAKVEA-SDRGNYSCFVSSPSSTK 86 (96)
T ss_pred cCceeeeeCCcEEEeeCCCCCCCCCEEEEEECCcccccccCCCeEEe--CCCCcEEEeecCH-hhCceeEEEEEecccCC
Confidence 345678999999999976 68899999999998754 223333322 3345799999999 99999999999987543
|
Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes. |
| >cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins | Back alignment and domain information |
|---|
Probab=98.41 E-value=9.4e-07 Score=67.17 Aligned_cols=65 Identities=17% Similarity=0.278 Sum_probs=52.2
Q ss_pred eEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEeecCCeeEEEeccC
Q psy7039 124 VKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFC 203 (516)
Q Consensus 124 ~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~ 203 (516)
..+.+|++++|+|...+ +.+..++.|++++..+.. ......|.|.++
T Consensus 9 ~~V~~G~~vtL~C~~~~-------------------------~~~~~~~~w~k~g~~~~~--------~~~~~~l~I~~~ 55 (83)
T cd05753 9 RVVFEGEPLVLRCHGWK-------------------------NKPVYKVTYYRDGKAKKY--------SHSNSNLSIPQA 55 (83)
T ss_pred ceecCCCCEEEEeeCCC-------------------------CCcceEEEEEECCeEccc--------cCCCceEEECcc
Confidence 45889999999999861 456678999999876542 123458999999
Q ss_pred CCCCCeeEEEEEEcCCCc
Q psy7039 204 SRSDTGHYSLTLENNLGT 221 (516)
Q Consensus 204 ~~~d~g~Y~c~~~~~~g~ 221 (516)
+.+|+|.|+|.+.+..+.
T Consensus 56 ~~~dsG~Y~C~~~~~~~~ 73 (83)
T cd05753 56 TLSDSGSYHCSGIIGSYD 73 (83)
T ss_pred CHHHCEEEEEEEEeCCce
Confidence 999999999999988764
|
Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity. |
| >cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.9e-06 Score=66.63 Aligned_cols=79 Identities=15% Similarity=0.224 Sum_probs=57.4
Q ss_pred cEEEEcCCeEEEEEEEeeecCCceEEEECCe--ec----CCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEE-cCCC
Q psy7039 364 DMTVLAGEEFTITVPFSGRPKPTPIWTVNGD--EV----SPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLV-NTVG 436 (516)
Q Consensus 364 ~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~--~l----~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~-n~~G 436 (516)
.+.+.+|+.+.|.|.. +.|.+.+.|++... .. ....++... ...|.|.++.+ .|+|.|.|.|. |..+
T Consensus 5 ~~~~~eG~~v~L~C~~-~~p~p~v~Wykq~~g~~~~~~~~~~~r~~~~----~~~L~I~~~~~-~DsG~Y~C~a~~~~~~ 78 (91)
T cd05871 5 VVYGVENNSTFLECLP-KSPQASVKWLFQRGGDQRKEEVKTEERLIHT----ERGLLLRSLQR-SDAGVYTCTAVEHSFS 78 (91)
T ss_pred EEEEecCCcEEEEEEC-CCCCceEEEEEECCCCCccccccccccEEEe----cCeEEEeeCCh-hHCEEEEEEEEccCCe
Confidence 4567899999999996 47888999998432 11 112333322 24599999999 99999999998 4666
Q ss_pred ceeEEEEEEEec
Q psy7039 437 SDSASCKVYVVD 448 (516)
Q Consensus 437 ~~s~s~~l~v~~ 448 (516)
.....+.|+|..
T Consensus 79 ~~~~~~~l~v~~ 90 (91)
T cd05871 79 QTLAKYTLHVIE 90 (91)
T ss_pred EEEEEEEEEEec
Confidence 666677777753
|
Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula |
| >PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A | Back alignment and domain information |
|---|
Probab=98.38 E-value=2.1e-06 Score=64.69 Aligned_cols=71 Identities=34% Similarity=0.503 Sum_probs=55.5
Q ss_pred EEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCc-eeEEEE
Q psy7039 365 MTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGS-DSASCK 443 (516)
Q Consensus 365 ~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~-~s~s~~ 443 (516)
..+..|+.+.|.|.+.+.|.+.+.|++++..+... .+. +.+..+.. ++.|.|+|.|.+..+. .+.++.
T Consensus 9 ~~v~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~--------~~~--~~~~~~~~-~~~g~y~C~~~~~~~~~~s~~~~ 77 (80)
T PF13895_consen 9 QSVEEGDSVTLTCSVSGNPPPQVQWYKNGSPINSS--------QNG--LFIPNVSP-EDSGNYTCRASNGSGSNTSTSVN 77 (80)
T ss_dssp SEEETTSEEEEEEEEESSSSSEEEEEETTEEEEEE--------SSE--EEESSEEG-GGTEEEEEEEEETTEEEEEEEEE
T ss_pred eEEeCCCcEEEEEEEEcccceeeeeeeeeeeeeee--------eee--eeeeeecc-ccCEEEEEEEEeCCCCeEeeeEE
Confidence 56899999999999999988999999988665421 111 66788899 9999999999996653 555566
Q ss_pred EEE
Q psy7039 444 VYV 446 (516)
Q Consensus 444 l~v 446 (516)
|+|
T Consensus 78 v~V 80 (80)
T PF13895_consen 78 VTV 80 (80)
T ss_dssp EEE
T ss_pred eeC
Confidence 654
|
... |
| >cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.7e-06 Score=66.30 Aligned_cols=72 Identities=22% Similarity=0.297 Sum_probs=50.9
Q ss_pred CCeEEEEEeeeeccccccCccccccccccCccceeecCcC--ceeeEEeeCCeeeccC---C--ceE-EeecCCeeEEEe
Q psy7039 129 GQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEP--FLNHGWSINGQVCQIG---G--RAD-VQTTKSETVLDI 200 (516)
Q Consensus 129 g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p--~~~i~W~~~~~~~~~~---~--~~~-~~~~~~~~~l~i 200 (516)
|+++.|.|.+. +.+ ...+.|..++...... . +.. .......+.|.|
T Consensus 1 Ge~~~L~C~~~--------------------------~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~s~L~I 54 (86)
T cd05862 1 GEKLVLNCTAR--------------------------TELNVGIDFQWDYPGKKEQRAKSVSENRRSLQEHTELSSTLTI 54 (86)
T ss_pred CCcEEEEEEEE--------------------------eCCCCcEEEEEEcCCcccccceecccccccccccceeeeEEEE
Confidence 78899999998 654 5688998877643211 1 111 111234679999
Q ss_pred ccCCCCCCeeEEEEEEcCCCceEEEE
Q psy7039 201 PFCSRSDTGHYSLTLENNLGTATASA 226 (516)
Q Consensus 201 ~~~~~~d~g~Y~c~~~~~~g~~~~~~ 226 (516)
.+++..|+|.|+|.+.|..|......
T Consensus 55 ~~~~~~DsG~Y~C~a~n~~~~~~~~t 80 (86)
T cd05862 55 ENVTLSDLGRYTCTASSGQMIAKNST 80 (86)
T ss_pred ecCCcccCEEEEEEEeecceEecccE
Confidence 99999999999999999777554443
|
IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge |
| >cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin | Back alignment and domain information |
|---|
Probab=98.34 E-value=2.4e-06 Score=66.09 Aligned_cols=69 Identities=19% Similarity=0.136 Sum_probs=48.9
Q ss_pred ceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCe--ee----ccCCceEEeecCCee
Q psy7039 123 DVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQ--VC----QIGGRADVQTTKSET 196 (516)
Q Consensus 123 ~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~--~~----~~~~~~~~~~~~~~~ 196 (516)
.+.+.+|+++.|.|.. +.|.+.+.|++.+. .. ....++.. ...
T Consensus 5 ~~~~~eG~~v~L~C~~---------------------------~~p~p~v~Wykq~~g~~~~~~~~~~~r~~~----~~~ 53 (91)
T cd05871 5 VVYGVENNSTFLECLP---------------------------KSPQASVKWLFQRGGDQRKEEVKTEERLIH----TER 53 (91)
T ss_pred EEEEecCCcEEEEEEC---------------------------CCCCceEEEEEECCCCCccccccccccEEE----ecC
Confidence 3567899999999985 45788999998432 21 11233332 224
Q ss_pred EEEeccCCCCCCeeEEEEEEc-CCCce
Q psy7039 197 VLDIPFCSRSDTGHYSLTLEN-NLGTA 222 (516)
Q Consensus 197 ~l~i~~~~~~d~g~Y~c~~~~-~~g~~ 222 (516)
.|.|.+++.+|+|.|+|.+.+ ..+..
T Consensus 54 ~L~I~~~~~~DsG~Y~C~a~~~~~~~~ 80 (91)
T cd05871 54 GLLLRSLQRSDAGVYTCTAVEHSFSQT 80 (91)
T ss_pred eEEEeeCChhHCEEEEEEEEccCCeEE
Confidence 699999999999999999984 44433
|
Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula |
| >PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A | Back alignment and domain information |
|---|
Probab=98.30 E-value=3.1e-06 Score=63.75 Aligned_cols=61 Identities=25% Similarity=0.353 Sum_probs=50.7
Q ss_pred eEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEeecCCeeEEEeccC
Q psy7039 124 VKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFC 203 (516)
Q Consensus 124 ~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~ 203 (516)
..+.+|+.+.|.|.+. +.|...+.|++++..+.... ..|.|.++
T Consensus 9 ~~v~~g~~~~l~C~~~--------------------------~~p~~~~~w~~~~~~~~~~~----------~~~~~~~~ 52 (80)
T PF13895_consen 9 QSVEEGDSVTLTCSVS--------------------------GNPPPQVQWYKNGSPINSSQ----------NGLFIPNV 52 (80)
T ss_dssp SEEETTSEEEEEEEEE--------------------------SSSSSEEEEEETTEEEEEES----------SEEEESSE
T ss_pred eEEeCCCcEEEEEEEE--------------------------cccceeeeeeeeeeeeeeee----------eeeeeeee
Confidence 5688999999999999 88889999999887765221 12778899
Q ss_pred CCCCCeeEEEEEEcCCC
Q psy7039 204 SRSDTGHYSLTLENNLG 220 (516)
Q Consensus 204 ~~~d~g~Y~c~~~~~~g 220 (516)
+.+|.|.|+|.+.+..+
T Consensus 53 ~~~~~g~y~C~~~~~~~ 69 (80)
T PF13895_consen 53 SPEDSGNYTCRASNGSG 69 (80)
T ss_dssp EGGGTEEEEEEEEETTE
T ss_pred ccccCEEEEEEEEeCCC
Confidence 99999999999988554
|
... |
| >PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs | Back alignment and domain information |
|---|
Probab=98.30 E-value=2.8e-06 Score=61.03 Aligned_cols=61 Identities=26% Similarity=0.425 Sum_probs=46.0
Q ss_pred CCeEEEEEEE-eeecCCceEEEECCeecCCCCceEEEEcCCe--EEEEEcCceecCCceEEEEEE
Q psy7039 370 GEEFTITVPF-SGRPKPTPIWTVNGDEVSPDGRIKFETSENQ--TIYRNKSAKRATDSGSYTIQL 431 (516)
Q Consensus 370 g~~~~l~C~~-~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~--~~l~i~~~~~~~~~g~y~c~a 431 (516)
|+.+.|.|.+ .+.+...+.|.+++..+.............. ..|.|.++.. +|+|.|.|.|
T Consensus 1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~-~d~G~Y~C~v 64 (64)
T PF00047_consen 1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPEGSTTNRSTNSVSSTSRLTISNVTP-EDSGTYTCVV 64 (64)
T ss_dssp TSEEEEEEEEEESSSTSEEEEEETTTTTSEEEEEEEEETTTEEEEEEEESSCTG-GGTEEEEEEE
T ss_pred CCeEEEEeecCCCCCCcEEEEEECCccccCcceeEeecccceeeeEEEEccCCH-HHCEEEEEEC
Confidence 7889999999 6677779999999976654433333332222 1399999999 9999999986
|
; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H .... |
| >cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG) | Back alignment and domain information |
|---|
Probab=98.29 E-value=6.6e-06 Score=65.17 Aligned_cols=86 Identities=16% Similarity=0.126 Sum_probs=57.8
Q ss_pred CCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeecc------CCceEEee---cCCeeEEE
Q psy7039 129 GQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQI------GGRADVQT---TKSETVLD 199 (516)
Q Consensus 129 g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~------~~~~~~~~---~~~~~~l~ 199 (516)
|+++.|.|.+. + ........+.|.+ ..+...+.|+.++..... ..|+.+.. ..+..+|.
T Consensus 1 G~~v~L~C~~~-------~----~~~~~~~~v~W~k-~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~ 68 (100)
T cd05713 1 GEDAELPCHLS-------P----KMSAEHMEVRWFR-SQFSPAVHLYRDGQDQYGEQMPEYRGRTELLKDAIAEGSVALR 68 (100)
T ss_pred CCcEEEEeEEc-------C----CCCCCeeEEEEEE-CCCceeEEEEcCCcccccccCccccceEEeecccccCCcEEEE
Confidence 68899999987 1 1123455688877 445566777776544321 13444432 23567999
Q ss_pred eccCCCCCCeeEEEEEEcCCCceEEEE
Q psy7039 200 IPFCSRSDTGHYSLTLENNLGTATASA 226 (516)
Q Consensus 200 i~~~~~~d~g~Y~c~~~~~~g~~~~~~ 226 (516)
|.+++.+|+|.|.|.+.+..+..+..+
T Consensus 69 I~~v~~~D~G~Y~C~v~~~~~~~~~~i 95 (100)
T cd05713 69 IHNVRASDEGLYTCFFQSDGFYEEATV 95 (100)
T ss_pred EEcCChhhCEEEEEEEecCCcEEEEEE
Confidence 999999999999999998766554444
|
Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM). |
| >cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1) | Back alignment and domain information |
|---|
Probab=98.25 E-value=4.9e-06 Score=64.62 Aligned_cols=90 Identities=19% Similarity=0.157 Sum_probs=56.2
Q ss_pred cceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCceE---EeecCCeeEE
Q psy7039 122 NDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRAD---VQTTKSETVL 198 (516)
Q Consensus 122 ~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~---~~~~~~~~~l 198 (516)
....+.+|+++.|+|... ++| ++..-..+ .....+++|++++.......... .+.......|
T Consensus 8 ~~~~~~~GE~v~l~C~~~--~~~----~~~~~~~~---------~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~~~~~~L 72 (104)
T cd05896 8 KKYMVLAGEPVRIKCALF--YGY----IRTNYSMA---------QSAGLSLMWYKSSGDGEEPIEIIFDGVRMSKEEDSI 72 (104)
T ss_pred eeEEEcCCCeEEEECCCc--ccc----cccccccc---------ccCCceEEEEECCCCCCCCCcccccceeEEEeCCEE
Confidence 346788999999999974 000 11000000 11234899999875444322100 1222345689
Q ss_pred EeccCCCCCCeeEEEEEEcCCCceEEEE
Q psy7039 199 DIPFCSRSDTGHYSLTLENNLGTATASA 226 (516)
Q Consensus 199 ~i~~~~~~d~g~Y~c~~~~~~g~~~~~~ 226 (516)
.|.++..+|+|.|+|.++|........+
T Consensus 73 wf~Pa~~eDSG~Y~C~~rN~t~C~~~~i 100 (104)
T cd05896 73 WFRPAELQDSGLYTCVLRNSTYCMKVSM 100 (104)
T ss_pred EEEeCChhhCeEEEEEECCCCcceEEEE
Confidence 9999999999999999998776555443
|
Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of |
| >cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)) | Back alignment and domain information |
|---|
Probab=98.24 E-value=1.7e-05 Score=61.40 Aligned_cols=72 Identities=21% Similarity=0.231 Sum_probs=56.5
Q ss_pred cccEEEEcCCeEEEEEEEeeecCCceEEEECCeec--------CCCCceEEEE-cCCeEEEEEcCceecCCceEEEEEEE
Q psy7039 362 IRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEV--------SPDGRIKFET-SENQTIYRNKSAKRATDSGSYTIQLV 432 (516)
Q Consensus 362 ~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l--------~~~~~~~~~~-~~~~~~l~i~~~~~~~~~g~y~c~a~ 432 (516)
.+++.+.+|+++.|.|.+.+.....+.|++.+..+ ..+.+|.... .+...+|.|.+++. .|.|.|.|.+.
T Consensus 4 ~~nvtv~~G~ta~L~C~v~~~~~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~~~~~tL~I~~vq~-~D~G~Y~Cqv~ 82 (95)
T cd05881 4 TEDVTVVEGEVAIISCRVKNNDDSVIQLLNPNRQTIYFRDVRPLKDSRFQLVNFSSNELRVSLSNVSL-SDEGRYFCQLY 82 (95)
T ss_pred cCceEEcCCCcEEEEEEEccCCccEEEEEecCCcEEEecCccccCCcCEEEEeCCCCEEEEEECcCCc-ccCEEEEEEEE
Confidence 35688999999999999998876677887655322 2456777665 45566899999999 99999999997
Q ss_pred cC
Q psy7039 433 NT 434 (516)
Q Consensus 433 n~ 434 (516)
..
T Consensus 83 t~ 84 (95)
T cd05881 83 TD 84 (95)
T ss_pred cc
Confidence 53
|
Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a |
| >KOG0196|consensus | Back alignment and domain information |
|---|
Probab=98.23 E-value=1.1e-05 Score=82.94 Aligned_cols=103 Identities=29% Similarity=0.370 Sum_probs=82.4
Q ss_pred cceeccCCCCCCCCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCCCeEEeEEeecCCcEEEeCCCcCCCe
Q psy7039 3 HSVLIKNPFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVVVPAGETSCTVPGLIEGET 82 (516)
Q Consensus 3 ~~~~~~~~~~~p~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~ 82 (516)
.+|.|.+-+..|.+...++....+.++++|+|..|..+++ .|..|+|+|++.+.............++.+|.+|+|++.
T Consensus 432 a~vnItt~qa~ps~V~~~r~~~~~~~sitlsW~~p~~png-~ildYEvky~ek~~~e~~~~~~~t~~~~~ti~gL~p~t~ 510 (996)
T KOG0196|consen 432 ASVNITTNQAAPSPVSVLRQVSRTSDSITLSWSEPDQPNG-VILDYEVKYYEKDEDERSYSTLKTKTTTATITGLKPGTV 510 (996)
T ss_pred eeEEeeccccCCCccceEEEeeeccCceEEecCCCCCCCC-cceeEEEEEeeccccccceeEEecccceEEeeccCCCcE
Confidence 4567777888999999999999999999999999875554 599999999987531222222334678999999999999
Q ss_pred EEEEEEEecCCCCCCCCCCCcceE
Q psy7039 83 YQFQVRAVNAAGPGEASKPTAPIV 106 (516)
Q Consensus 83 y~~~~~a~n~~g~~~~s~~~~~~~ 106 (516)
|.|+|+|....|.+..+.....-+
T Consensus 511 YvfqVRarT~aG~G~~S~~~~fqT 534 (996)
T KOG0196|consen 511 YVFQVRARTAAGYGPYSGKHEFQT 534 (996)
T ss_pred EEEEEEEecccCCCCCCCceeeee
Confidence 999999999999988776654444
|
|
| >cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins | Back alignment and domain information |
|---|
Probab=98.22 E-value=4.3e-06 Score=64.55 Aligned_cols=73 Identities=15% Similarity=0.118 Sum_probs=57.6
Q ss_pred ccccEEEEcCCeEEEEEE-EeeecCCceEEEECCeec-CCCCceEEEEcCCeEEEEEcCceecCCce-EEEEEEEcCCCc
Q psy7039 361 SIRDMTVLAGEEFTITVP-FSGRPKPTPIWTVNGDEV-SPDGRIKFETSENQTIYRNKSAKRATDSG-SYTIQLVNTVGS 437 (516)
Q Consensus 361 ~~~~~~v~~g~~~~l~C~-~~g~p~~~i~W~~~~~~l-~~~~~~~~~~~~~~~~l~i~~~~~~~~~g-~y~c~a~n~~G~ 437 (516)
..+...+.+|+.+.|.|. ..|.|.|.|.|.+++... ..+.++.+. .+ +.|.|.++.. .|.| .|.|.|.|....
T Consensus 9 ~~~~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~~i~~~~Ri~~~--~~-GnL~fs~v~~-~D~g~~Y~C~a~~~~~~ 84 (95)
T cd05845 9 KIRPVEVEEGDSVVLPCNPPKSAVPLRIYWMNSDLLHITQDERVSMG--QN-GNLYFANVEE-QDSHPDYICHAHFPGLR 84 (95)
T ss_pred ccceeEEecCCCEEEEecCCCCCCCCEEEEECCCCccccccccEEEC--CC-ceEEEEEEeh-hhCCCCeEEEEEccccc
Confidence 456688999999999997 699999999999876542 334444332 22 6799999999 9999 799999998644
|
Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. |
| >cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) | Back alignment and domain information |
|---|
Probab=98.20 E-value=1.8e-05 Score=61.32 Aligned_cols=81 Identities=14% Similarity=0.231 Sum_probs=62.5
Q ss_pred cceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCcee-eEEeeCCeeeccCCc--eEEeec---CCe
Q psy7039 122 NDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLN-HGWSINGQVCQIGGR--ADVQTT---KSE 195 (516)
Q Consensus 122 ~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-i~W~~~~~~~~~~~~--~~~~~~---~~~ 195 (516)
..+.|.+|+.+.|.|.+. +.|.+. +.|.+++..+..... +..+.. ...
T Consensus 11 ~~~~v~~gE~~~L~V~ie--------------------------AYP~p~~~~W~~~~~~l~~~~~~~~~~~~~~~~rY~ 64 (101)
T cd05860 11 TTIFVNAGENLDLIVEYE--------------------------AYPKPEHQQWIYMNRTLTNTSDHYVKSRNESNNRYV 64 (101)
T ss_pred ceEEEECCCCEEEEEEEE--------------------------eCCCCeeeEEEcCCcccCccccceeEEeccCceEEE
Confidence 457799999999999999 999997 999998776643322 222211 134
Q ss_pred eEEEeccCCCCCCeeEEEEEEcCCCceEEEEEe
Q psy7039 196 TVLDIPFCSRSDTGHYSLTLENNLGTATASAHV 228 (516)
Q Consensus 196 ~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~ 228 (516)
+.|.+..+..+|+|.|+|.+.|..........+
T Consensus 65 S~L~L~Rlk~~E~G~YTf~a~N~~~~~s~tF~l 97 (101)
T cd05860 65 SELHLTRLKGTEGGTYTFLVSNSDASASVTFNV 97 (101)
T ss_pred EEEEEeecChhhCcEEEEEEECCCCeEEEEEEE
Confidence 799999999999999999999988776655443
|
Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction. |
| >cd00063 FN3 Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin | Back alignment and domain information |
|---|
Probab=98.20 E-value=2.6e-05 Score=59.88 Aligned_cols=85 Identities=49% Similarity=0.882 Sum_probs=65.6
Q ss_pred CCCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCC-CeEEeEEeecCCcEEEeCCCcCCCeEEEEEEEecC
Q psy7039 14 PGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTG-NWEKAVVVPAGETSCTVPGLIEGETYQFQVRAVNA 92 (516)
Q Consensus 14 p~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~-~~~~~~~~~~~~~~~~i~~l~~~~~y~~~~~a~n~ 92 (516)
|.+|.++.+......++.|+|.+|.... ..+..|.|.+...+. .|............+.|.+|.+++.|.+++++.+.
T Consensus 1 p~~p~~~~~~~~~~~~~~v~W~~~~~~~-~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~l~p~~~Y~~~v~a~~~ 79 (93)
T cd00063 1 PSPPTNLRVTDVTSTSVTLSWTPPEDDG-GPITGYVVEYREKGSGDWKEVEVTPGSETSYTLTGLKPGTEYEFRVRAVNG 79 (93)
T ss_pred CcCCCCcEEEEecCCEEEEEECCCCCCC-CcceeEEEEEeeCCCCCCEEeeccCCcccEEEEccccCCCEEEEEEEEECC
Confidence 5677888888778899999999975332 357899999987653 66655443346789999999999999999999987
Q ss_pred CCCCCCC
Q psy7039 93 AGPGEAS 99 (516)
Q Consensus 93 ~g~~~~s 99 (516)
.|.+.++
T Consensus 80 ~~~~~~s 86 (93)
T cd00063 80 GGESPPS 86 (93)
T ss_pred CccCCCc
Confidence 6665443
|
Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases. |
| >cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins | Back alignment and domain information |
|---|
Probab=98.18 E-value=9.4e-06 Score=65.43 Aligned_cols=75 Identities=15% Similarity=0.201 Sum_probs=54.0
Q ss_pred CcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCee--------------eccC
Q psy7039 119 STLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQV--------------CQIG 184 (516)
Q Consensus 119 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~--------------~~~~ 184 (516)
..+..+.+.+|+++.|.|.+. +.+...+.|++.... ....
T Consensus 3 q~~~~v~~~~G~~v~L~C~~~--------------------------~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~ 56 (109)
T cd04983 3 QSPQSLSVQEGENVTLNCNYS--------------------------TSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEK 56 (109)
T ss_pred ecCCceEEcCCCCEEEEEEEC--------------------------CCCccEEEEEEECCCCCeEEEEEEecCCCcccC
Confidence 345568899999999999998 555566677663210 0123
Q ss_pred CceEEeec--CCeeEEEeccCCCCCCeeEEEEEEcCC
Q psy7039 185 GRADVQTT--KSETVLDIPFCSRSDTGHYSLTLENNL 219 (516)
Q Consensus 185 ~~~~~~~~--~~~~~l~i~~~~~~d~g~Y~c~~~~~~ 219 (516)
.|+.+... ....+|.|.+++.+|+|.|.|.+.+..
T Consensus 57 ~r~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~~~~~~ 93 (109)
T cd04983 57 GRFSATLDKSRKSSSLHISAAQLSDSAVYFCALSESG 93 (109)
T ss_pred CcEEEEEcccCCEEEEEECCCCHHHCEEEEEEEecCC
Confidence 55655432 367899999999999999999998643
|
IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide. |
| >cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2) | Back alignment and domain information |
|---|
Probab=98.16 E-value=6.5e-06 Score=63.70 Aligned_cols=76 Identities=14% Similarity=0.145 Sum_probs=53.3
Q ss_pred EEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEeecCCeeEEEeccCC
Q psy7039 125 KIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFCS 204 (516)
Q Consensus 125 ~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~ 204 (516)
.+..|.+..|.|.-.+ .| . ...+.+.++|++++..+....+.... ......|.|.++.
T Consensus 6 ~~~~~~~~~l~Cp~~~--~f------------------~-~~~~~~~v~WYKd~~~l~~~~~~~~~-~~~~~~L~I~~v~ 63 (95)
T cd05897 6 ILFTSTSGKLVCPDLS--DF------------------T-INRTDVELQWYKDSVLLDKDNEKFYS-LKGSTYLHIIDVS 63 (95)
T ss_pred EeccccCcEEECCCHH--Hc------------------c-cCCCCCcEEEccCCEECcCCCcceEe-cCCCCEEEEEEcC
Confidence 4567889999997431 00 0 13467799999999988754322211 1234579999999
Q ss_pred CCCCeeEEEEEEcCCCce
Q psy7039 205 RSDTGHYSLTLENNLGTA 222 (516)
Q Consensus 205 ~~d~g~Y~c~~~~~~g~~ 222 (516)
.+|+|.|+|.+.+..+..
T Consensus 64 ~~D~G~YtC~~~~~~~g~ 81 (95)
T cd05897 64 LNDSGYYTCKLQFTHEGK 81 (95)
T ss_pred hhhCEEEEEEEEEeeCCE
Confidence 999999999999876544
|
Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. |
| >cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B | Back alignment and domain information |
|---|
Probab=98.16 E-value=5e-06 Score=62.81 Aligned_cols=64 Identities=20% Similarity=0.194 Sum_probs=53.2
Q ss_pred cceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEeecCCeeEEEec
Q psy7039 122 NDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIP 201 (516)
Q Consensus 122 ~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~ 201 (516)
+.+.+..|+++.|.|... +. .+.+.|++++..+..+.++..... .|.|.
T Consensus 4 ~~~tv~~g~~v~L~C~~~--------------------------s~-~A~v~W~~ng~~l~~~~r~~~~~~----GLlI~ 52 (85)
T cd05872 4 KNRTVAPGADVVLPCQLR--------------------------SN-LASPVWLFNGTPLNAQFSYRVGTD----GLLIL 52 (85)
T ss_pred eEEEEecCCCEEEECCCC--------------------------CC-CccEEEEECCcccCCCcceEEeCC----CCEEE
Confidence 457899999999999987 54 669999999999876666554433 38899
Q ss_pred cCCCCCCeeEEEEEE
Q psy7039 202 FCSRSDTGHYSLTLE 216 (516)
Q Consensus 202 ~~~~~d~g~Y~c~~~ 216 (516)
.++..|+|.|.|.+.
T Consensus 53 ~~~~~dsG~Y~C~s~ 67 (85)
T cd05872 53 VTSPEHSGTYRCYSE 67 (85)
T ss_pred ECCHhhCEEEEEEEe
Confidence 999999999999986
|
Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis. |
| >cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2) | Back alignment and domain information |
|---|
Probab=98.15 E-value=9.2e-06 Score=62.87 Aligned_cols=72 Identities=18% Similarity=0.182 Sum_probs=53.5
Q ss_pred EEEEcCCeEEEEEEE-e----eecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCce
Q psy7039 365 MTVLAGEEFTITVPF-S----GRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSD 438 (516)
Q Consensus 365 ~~v~~g~~~~l~C~~-~----g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~ 438 (516)
..+..|....|.|+- + ..+.+.+.|+|++..+..+...... ..+.+.|.|.++.. +|+|.|+|.|.+..|..
T Consensus 5 ~~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~~~~~~~~-~~~~~~L~I~~v~~-~D~G~YtC~~~~~~~g~ 81 (95)
T cd05897 5 QILFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDKDNEKFYS-LKGSTYLHIIDVSL-NDSGYYTCKLQFTHEGK 81 (95)
T ss_pred eEeccccCcEEECCCHHHcccCCCCCcEEEccCCEECcCCCcceEe-cCCCCEEEEEEcCh-hhCEEEEEEEEEeeCCE
Confidence 456788899999973 2 3456689999999988644322211 12334699999999 99999999999997664
|
Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. |
| >cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)) | Back alignment and domain information |
|---|
Probab=98.11 E-value=7.7e-06 Score=60.90 Aligned_cols=57 Identities=12% Similarity=0.081 Sum_probs=41.8
Q ss_pred CcCceeeEEeeCCeeeccCCceEEe--ecCCeeEEEeccCCCCCCeeEEEEEEcCCCce
Q psy7039 166 SEPFLNHGWSINGQVCQIGGRADVQ--TTKSETVLDIPFCSRSDTGHYSLTLENNLGTA 222 (516)
Q Consensus 166 ~~p~~~i~W~~~~~~~~~~~~~~~~--~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~ 222 (516)
+.|++.|+|++++.++......... .....+.|.|.....+|.+.|+|.+.|..+..
T Consensus 11 skP~a~i~W~k~~~~l~~~~~~~~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~~ 69 (80)
T cd05885 11 SKPAATLRWYRDRKELKGVISQQENGKTVSVSNTIRFPVDRKDDGAILSCEASHPALVS 69 (80)
T ss_pred ccCCCeEEEEECCEECCCCcccccCCceEEEEEEEEEEeeeccCCcEEEEEEEChhhCC
Confidence 8999999999999998643211000 00123579999999999999999999976643
|
Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression. |
| >PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C | Back alignment and domain information |
|---|
Probab=98.10 E-value=4.9e-06 Score=61.67 Aligned_cols=57 Identities=19% Similarity=0.303 Sum_probs=41.3
Q ss_pred EEEEEeeeeccccccCccccccccccCccceeecCcC-ceeeEEeeCCeeeccCCceEEeecCCeeEEEeccCCCCCCee
Q psy7039 132 FSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEP-FLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGH 210 (516)
Q Consensus 132 ~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~ 210 (516)
+.|.|.+. +.+ .+.+.|+ ...... .............|.|.++..+|.|.
T Consensus 18 ~~l~C~~~--------------------------~~~~~~~~~W~-~~~~~~--~~~~~~~~~~~~~L~i~~v~~~~~g~ 68 (75)
T PF13927_consen 18 VTLTCSAE--------------------------GGPPPPSISWY-DSNPSF--NSNSRGSSSSNSTLTISNVTRSDNGT 68 (75)
T ss_dssp EEEEEEES--------------------------SEESSEEEEEE-TEEEEE--EEEEEEEEEEEEEEEESSCCGGGTEE
T ss_pred EEEEEEEc--------------------------cccCCeEEEEE-ecCCce--eeeeeeccceeeEEEEccCCHHhCcE
Confidence 99999999 666 8999999 111111 11122224456799999999999999
Q ss_pred EEEEEEc
Q psy7039 211 YSLTLEN 217 (516)
Q Consensus 211 Y~c~~~~ 217 (516)
|+|.++|
T Consensus 69 y~C~a~N 75 (75)
T PF13927_consen 69 YTCIASN 75 (75)
T ss_dssp EEEEEEE
T ss_pred EEEEEEC
Confidence 9999976
|
... |
| >cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) | Back alignment and domain information |
|---|
Probab=98.10 E-value=2.9e-05 Score=58.86 Aligned_cols=70 Identities=13% Similarity=0.201 Sum_probs=47.8
Q ss_pred EEEEEEEee-ecCCceEEEECCeecCCCCceEE-EEcCC----eEEEEEcCceecCCceEEEEEEEcCCCceeEEEE
Q psy7039 373 FTITVPFSG-RPKPTPIWTVNGDEVSPDGRIKF-ETSEN----QTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCK 443 (516)
Q Consensus 373 ~~l~C~~~g-~p~~~i~W~~~~~~l~~~~~~~~-~~~~~----~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~ 443 (516)
+.|.|.+.| .|.+.+.|++++..+........ ...+. .+.|.|..... ++.+.|+|.|.|..........
T Consensus 2 ~~L~C~v~g~~P~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~-~~~~~y~C~a~n~~l~~~~~~s 77 (82)
T cd05759 2 YNLTCRARGAKPAAEIIWFRDGEVLDGATYSKELLKDGKRETTVSTLPITPSDH-DTGRTFTCRARNEALPTGKETS 77 (82)
T ss_pred EEEEEEEeCccCCCEEEEEECCEEccCceeeeeEecCCCeEEEEEEEEEeCcee-cCCCEEEEEEcCccCCCCcEEE
Confidence 579999987 68889999999988753321111 11111 24677877777 8889999999998765443333
|
Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. |
| >cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B | Back alignment and domain information |
|---|
Probab=98.08 E-value=2.7e-05 Score=58.87 Aligned_cols=76 Identities=16% Similarity=0.254 Sum_probs=57.9
Q ss_pred ccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEEE
Q psy7039 363 RDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASC 442 (516)
Q Consensus 363 ~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~ 442 (516)
+...+..|..+.|.|...+. ...+.|.+++..+..+.++.... . -|.|..+.. .|+|.|.|.+. +.|.....+
T Consensus 4 ~~~tv~~g~~v~L~C~~~s~-~A~v~W~~ng~~l~~~~r~~~~~--~--GLlI~~~~~-~dsG~Y~C~s~-E~gf~~~~~ 76 (85)
T cd05872 4 KNRTVAPGADVVLPCQLRSN-LASPVWLFNGTPLNAQFSYRVGT--D--GLLILVTSP-EHSGTYRCYSE-EEGFQQLVA 76 (85)
T ss_pred eEEEEecCCCEEEECCCCCC-CccEEEEECCcccCCCcceEEeC--C--CCEEEECCH-hhCEEEEEEEe-cCCCeEEEE
Confidence 55788999999999999776 55999999999886655554432 2 277889999 99999999987 556654444
Q ss_pred EEE
Q psy7039 443 KVY 445 (516)
Q Consensus 443 ~l~ 445 (516)
.+.
T Consensus 77 ~y~ 79 (85)
T cd05872 77 SYS 79 (85)
T ss_pred EEE
Confidence 333
|
Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis. |
| >cd00099 IgV Immunoglobulin variable domain (IgV) | Back alignment and domain information |
|---|
Probab=98.04 E-value=1.9e-05 Score=63.10 Aligned_cols=83 Identities=13% Similarity=0.076 Sum_probs=50.8
Q ss_pred EEecCCeEEEEEeeeeccccccCccccccccccCccceeecCc-Ccee-eEEeeCCe-e--eccCCceEEeecC--CeeE
Q psy7039 125 KIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSE-PFLN-HGWSINGQ-V--CQIGGRADVQTTK--SETV 197 (516)
Q Consensus 125 ~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~-i~W~~~~~-~--~~~~~~~~~~~~~--~~~~ 197 (516)
.+.+|+.++|.|.+.. .+....+.|++... ..+. +....... . .....|+.+.... ...+
T Consensus 2 ~v~~G~~v~L~C~~~~-------------~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~s 68 (105)
T cd00099 2 SVSEGESVTLSCTYSG-------------SFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFT 68 (105)
T ss_pred eecCCCCEEEEEEEeC-------------CcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEE
Confidence 5779999999999981 02344555555432 1111 11111111 0 1113455555443 5679
Q ss_pred EEeccCCCCCCeeEEEEEEcCCC
Q psy7039 198 LDIPFCSRSDTGHYSLTLENNLG 220 (516)
Q Consensus 198 l~i~~~~~~d~g~Y~c~~~~~~g 220 (516)
|.|.+++.+|+|.|.|.+.+..+
T Consensus 69 L~I~~v~~~D~G~Y~C~v~~~~~ 91 (105)
T cd00099 69 LTISSLQPEDSAVYYCAVSLSGG 91 (105)
T ss_pred EEECCCCHHHCEEEEEEEecCCC
Confidence 99999999999999999987554
|
IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond. |
| >cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)) | Back alignment and domain information |
|---|
Probab=98.02 E-value=2.3e-05 Score=58.32 Aligned_cols=64 Identities=13% Similarity=0.106 Sum_probs=46.8
Q ss_pred EEEEEEEe-eecCCceEEEECCeecCCCCceEEEEc---CCeEEEEEcCceecCCceEEEEEEEcCCCce
Q psy7039 373 FTITVPFS-GRPKPTPIWTVNGDEVSPDGRIKFETS---ENQTIYRNKSAKRATDSGSYTIQLVNTVGSD 438 (516)
Q Consensus 373 ~~l~C~~~-g~p~~~i~W~~~~~~l~~~~~~~~~~~---~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~ 438 (516)
++|.|... ++|.+.|.|++++..+...... .... ...+.|.|.-... +|.+.|+|.|.|..+..
T Consensus 2 ~~L~C~s~~skP~a~i~W~k~~~~l~~~~~~-~~~~~~~t~~s~L~~~~~~~-Ddg~~~~C~A~n~a~~~ 69 (80)
T cd05885 2 VELTCLSPRSKPAATLRWYRDRKELKGVISQ-QENGKTVSVSNTIRFPVDRK-DDGAILSCEASHPALVS 69 (80)
T ss_pred EEEEEeCCCccCCCeEEEEECCEECCCCccc-ccCCceEEEEEEEEEEeeec-cCCcEEEEEEEChhhCC
Confidence 67999985 6788899999999988542210 0000 0124688888888 99999999999998764
|
Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression. |
| >cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins | Back alignment and domain information |
|---|
Probab=97.99 E-value=1.5e-05 Score=61.77 Aligned_cols=65 Identities=11% Similarity=0.153 Sum_probs=49.1
Q ss_pred eEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEeecCCeeEEEeccC
Q psy7039 124 VKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFC 203 (516)
Q Consensus 124 ~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~ 203 (516)
..|..|+.++|+|... .+...+.|++++...... .....+....|.|.++
T Consensus 11 ~vV~~G~~VtL~C~~~---------------------------~~~~~f~l~k~g~~~~~~---~~~~~~~~~~f~i~~v 60 (91)
T cd05751 11 SVVPLGKPVTLRCQGP---------------------------YGAVEYRLYREGSTFAVK---KPPEPQNKAKFFIPSM 60 (91)
T ss_pred CccCCCCcEEEEEecC---------------------------CCCCEEEEEECCCCcccc---ccCCCceeEEEEccCC
Confidence 4678999999999775 456678898887653321 1122445678999999
Q ss_pred CCCCCeeEEEEEEcC
Q psy7039 204 SRSDTGHYSLTLENN 218 (516)
Q Consensus 204 ~~~d~g~Y~c~~~~~ 218 (516)
+.+|+|.|+|.+.+.
T Consensus 61 ~~~~~G~Y~C~~~~~ 75 (91)
T cd05751 61 KREHAGRYRCYYRSG 75 (91)
T ss_pred ChhHCEEEEEEEECC
Confidence 999999999999875
|
Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2), |
| >cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1) | Back alignment and domain information |
|---|
Probab=97.98 E-value=3.1e-05 Score=60.22 Aligned_cols=83 Identities=23% Similarity=0.237 Sum_probs=57.5
Q ss_pred ccEEEEcCCeEEEEEEEe-----------eecCCceEEEECCeecCCCCceE---EEEcCCeEEEEEcCceecCCceEEE
Q psy7039 363 RDMTVLAGEEFTITVPFS-----------GRPKPTPIWTVNGDEVSPDGRIK---FETSENQTIYRNKSAKRATDSGSYT 428 (516)
Q Consensus 363 ~~~~v~~g~~~~l~C~~~-----------g~p~~~i~W~~~~~~l~~~~~~~---~~~~~~~~~l~i~~~~~~~~~g~y~ 428 (516)
..+.+.+|+.+.|.|..- ......+.|+|++..+....... .........|.|..+.. +|+|.|.
T Consensus 8 ~~~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~~~~~~Lwf~Pa~~-eDSG~Y~ 86 (104)
T cd05896 8 KKYMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMSKEEDSIWFRPAEL-QDSGLYT 86 (104)
T ss_pred eeEEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEEEeCCEEEEEeCCh-hhCeEEE
Confidence 557889999999999961 11123799999975543322100 11222334699999999 9999999
Q ss_pred EEEEcCCCceeEEEEEEE
Q psy7039 429 IQLVNTVGSDSASCKVYV 446 (516)
Q Consensus 429 c~a~n~~G~~s~s~~l~v 446 (516)
|.+.|...-...++.|+|
T Consensus 87 C~~rN~t~C~~~~i~l~V 104 (104)
T cd05896 87 CVLRNSTYCMKVSMSLTV 104 (104)
T ss_pred EEECCCCcceEEEEEEEC
Confidence 999999877666666554
|
Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of |
| >cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain | Back alignment and domain information |
|---|
Probab=97.95 E-value=3.9e-05 Score=61.91 Aligned_cols=73 Identities=15% Similarity=0.089 Sum_probs=50.2
Q ss_pred CcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCe--ee-------------c-
Q psy7039 119 STLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQ--VC-------------Q- 182 (516)
Q Consensus 119 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~--~~-------------~- 182 (516)
..+..+.+.+|++++|.|... + +...+.|++... .. .
T Consensus 3 Q~p~~~~v~~G~~v~l~C~~~--------------------------~-~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~ 55 (110)
T cd05899 3 QSPRYLIKGRGQSVTLRCSQT--------------------------S-GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEE 55 (110)
T ss_pred ECCCceEEcCCCcEEEEEEEC--------------------------C-CCCEEEEEEECCCCCcEEEEEEcCCCceEec
Confidence 345668899999999999998 4 344555655211 00 0
Q ss_pred --cCCceEEeec-CCeeEEEeccCCCCCCeeEEEEEEcC
Q psy7039 183 --IGGRADVQTT-KSETVLDIPFCSRSDTGHYSLTLENN 218 (516)
Q Consensus 183 --~~~~~~~~~~-~~~~~l~i~~~~~~d~g~Y~c~~~~~ 218 (516)
...|+..... .....|.|.+++.+|+|.|.|.+.+.
T Consensus 56 ~~~~~r~~~~~~~~~~~~L~I~~~~~~Dsg~Y~Ca~~~~ 94 (110)
T cd05899 56 GDPKDRFSASRPSLTRSSLTIKSAEPEDSAVYLCASSLG 94 (110)
T ss_pred CccCCceEEECcCCCccEEEECCCChhhCEEEEEEeeCC
Confidence 1245544433 25679999999999999999998764
|
IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide. |
| >cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins | Back alignment and domain information |
|---|
Probab=97.94 E-value=5.8e-05 Score=60.75 Aligned_cols=74 Identities=19% Similarity=0.266 Sum_probs=56.4
Q ss_pred cccEEEEcCCeEEEEEEEeeecCCceEEEECCee------c--------CCCCceEEEEc--CCeEEEEEcCceecCCce
Q psy7039 362 IRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDE------V--------SPDGRIKFETS--ENQTIYRNKSAKRATDSG 425 (516)
Q Consensus 362 ~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~------l--------~~~~~~~~~~~--~~~~~l~i~~~~~~~~~g 425 (516)
+..+.+..|++++|.|.+.+.+...+.|++.... + ....++.+... .....|.|.+++. .|+|
T Consensus 5 ~~~v~~~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~-~DsG 83 (109)
T cd04983 5 PQSLSVQEGENVTLNCNYSTSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAAQL-SDSA 83 (109)
T ss_pred CCceEEcCCCCEEEEEEECCCCccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCCCH-HHCE
Confidence 4567899999999999998877779999985321 0 12345655433 3567899999999 9999
Q ss_pred EEEEEEEcCCC
Q psy7039 426 SYTIQLVNTVG 436 (516)
Q Consensus 426 ~y~c~a~n~~G 436 (516)
.|.|.+.+..+
T Consensus 84 ~Y~C~~~~~~~ 94 (109)
T cd04983 84 VYFCALSESGG 94 (109)
T ss_pred EEEEEEecCCC
Confidence 99999997653
|
IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide. |
| >cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins | Back alignment and domain information |
|---|
Probab=97.94 E-value=2.6e-05 Score=60.39 Aligned_cols=66 Identities=15% Similarity=0.089 Sum_probs=49.7
Q ss_pred cEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcC
Q psy7039 364 DMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNT 434 (516)
Q Consensus 364 ~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~ 434 (516)
...+..|++++|.|... .+...+.|+++|....... .........|.|.++.. .|+|.|+|...+.
T Consensus 10 ~~vV~~G~~VtL~C~~~-~~~~~f~l~k~g~~~~~~~---~~~~~~~~~f~i~~v~~-~~~G~Y~C~~~~~ 75 (91)
T cd05751 10 SSVVPLGKPVTLRCQGP-YGAVEYRLYREGSTFAVKK---PPEPQNKAKFFIPSMKR-EHAGRYRCYYRSG 75 (91)
T ss_pred CCccCCCCcEEEEEecC-CCCCEEEEEECCCCccccc---cCCCceeEEEEccCCCh-hHCEEEEEEEECC
Confidence 45678999999999885 5566789999986532210 11233456799999999 9999999999986
|
Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2), |
| >cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan | Back alignment and domain information |
|---|
Probab=97.94 E-value=7.4e-05 Score=60.01 Aligned_cols=79 Identities=16% Similarity=0.303 Sum_probs=57.3
Q ss_pred cCCeEEEEEEEeeec------------CCceEEEECCe--e---c-----------CCCCceEEEE---cCCeEEEEEcC
Q psy7039 369 AGEEFTITVPFSGRP------------KPTPIWTVNGD--E---V-----------SPDGRIKFET---SENQTIYRNKS 417 (516)
Q Consensus 369 ~g~~~~l~C~~~g~p------------~~~i~W~~~~~--~---l-----------~~~~~~~~~~---~~~~~~l~i~~ 417 (516)
.|++++|.|...... .+.|.|++... . + ....|+.+.. ..+..+|+|.+
T Consensus 1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~n 80 (112)
T cd05900 1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEITE 80 (112)
T ss_pred CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEee
Confidence 378999999986543 35899998421 0 0 0112444433 33567899999
Q ss_pred ceecCCceEEEEEEEcCCCceeEEEEEEEec
Q psy7039 418 AKRATDSGSYTIQLVNTVGSDSASCKVYVVD 448 (516)
Q Consensus 418 ~~~~~~~g~y~c~a~n~~G~~s~s~~l~v~~ 448 (516)
+.. .|+|.|+|.+.+.....+....|.|..
T Consensus 81 l~~-sDsG~Y~C~V~~g~~~~~~~v~l~v~g 110 (112)
T cd05900 81 LRS-NDSGTYRCEVMHGIEDNYDTVEVQVKG 110 (112)
T ss_pred ccc-ccCEEEEEEEecCCCCceeEEEEEEEe
Confidence 999 999999999998888888888887764
|
Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes. |
| >cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain | Back alignment and domain information |
|---|
Probab=97.92 E-value=3.9e-05 Score=61.40 Aligned_cols=86 Identities=10% Similarity=0.092 Sum_probs=51.3
Q ss_pred CcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecC--cCceeeEEeeCCeeeccCCceEEeecCCee
Q psy7039 119 STLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLS--EPFLNHGWSINGQVCQIGGRADVQTTKSET 196 (516)
Q Consensus 119 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~ 196 (516)
..+..+.+.+|++++|.|.+.+ ......+.|++.. .....+.+..+........|+.........
T Consensus 5 Q~p~~~~v~~G~~v~L~C~~~~-------------~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~ 71 (106)
T cd04980 5 QSPATLSVSPGESATISCKASQ-------------SVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSGSGTDF 71 (106)
T ss_pred ECCCcEEECCCCCEEEEEEECC-------------CCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEeccCCEE
Confidence 3455678999999999999871 0012334454432 111111111111111112456655455667
Q ss_pred EEEeccCCCCCCeeEEEEEEc
Q psy7039 197 VLDIPFCSRSDTGHYSLTLEN 217 (516)
Q Consensus 197 ~l~i~~~~~~d~g~Y~c~~~~ 217 (516)
.|.|.+++.+|+|.|.|.+.+
T Consensus 72 ~L~I~~~~~~Dsg~Y~Ca~~~ 92 (106)
T cd04980 72 TLTISRVEPEDAAVYYCQQYG 92 (106)
T ss_pred EEEECCCChHHCEEEEEEEeC
Confidence 899999999999999999864
|
IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains. |
| >cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00011 Score=58.73 Aligned_cols=79 Identities=18% Similarity=0.326 Sum_probs=56.2
Q ss_pred cCCeEEEEEEEeeec------CCceEEEECC-----e-ec--CCCC------ce--EEE---EcCCeEEEEEcCceecCC
Q psy7039 369 AGEEFTITVPFSGRP------KPTPIWTVNG-----D-EV--SPDG------RI--KFE---TSENQTIYRNKSAKRATD 423 (516)
Q Consensus 369 ~g~~~~l~C~~~g~p------~~~i~W~~~~-----~-~l--~~~~------~~--~~~---~~~~~~~l~i~~~~~~~~ 423 (516)
.|++++|.|.+...+ ...|.|++.. . .+ ..+. .+ .+. ...+..+|+|.++.. .|
T Consensus 1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~-sD 79 (106)
T cd05714 1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRL-ED 79 (106)
T ss_pred CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCH-HH
Confidence 478999999997653 4589999862 1 00 0111 11 111 123557899999999 99
Q ss_pred ceEEEEEEEcCCCceeEEEEEEEec
Q psy7039 424 SGSYTIQLVNTVGSDSASCKVYVVD 448 (516)
Q Consensus 424 ~g~y~c~a~n~~G~~s~s~~l~v~~ 448 (516)
+|.|+|.+.+..+.....+.|.|.+
T Consensus 80 ~G~Y~C~v~~~~~~~~~~v~L~V~~ 104 (106)
T cd05714 80 SGRYRCEVIDGIEDEQDTVELEVRG 104 (106)
T ss_pred CEEEEEEEEcCCCceEEEEEEEEEE
Confidence 9999999999888888888888864
|
Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. |
| >cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0) | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00011 Score=59.46 Aligned_cols=90 Identities=11% Similarity=0.081 Sum_probs=53.8
Q ss_pred ccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcC---ceeeEEeeCCeeecc-C----CceEEee-
Q psy7039 121 LNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEP---FLNHGWSINGQVCQI-G----GRADVQT- 191 (516)
Q Consensus 121 ~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p---~~~i~W~~~~~~~~~-~----~~~~~~~- 191 (516)
+..+.+..|+.+.|.|.++ .....-..+.+.|..+... ...+.-+.++..... . +|..+..
T Consensus 5 ~~ev~a~~G~~v~L~C~f~----------~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~ 74 (116)
T cd05879 5 DREVYGTVGSDVTLSCSFW----------SSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGN 74 (116)
T ss_pred cceEEEEcCCcEEEEEEEe----------cCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCC
Confidence 4457889999999999998 0001122345555222111 112222334444321 1 2444332
Q ss_pred -cCCeeEEEeccCCCCCCeeEEEEEEcCCC
Q psy7039 192 -TKSETVLDIPFCSRSDTGHYSLTLENNLG 220 (516)
Q Consensus 192 -~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g 220 (516)
.....+|.|.+++.+|.|.|+|.+.|..+
T Consensus 75 ~~~~daSI~I~nv~~sD~G~Y~C~v~n~p~ 104 (116)
T cd05879 75 PSRKDGSIVIHNLDYTDNGTFTCDVKNPPD 104 (116)
T ss_pred CCcCeeEEEEccCCcccCEEEEEEEEcCCC
Confidence 23567999999999999999999998654
|
Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. |
| >cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00013 Score=58.31 Aligned_cols=36 Identities=14% Similarity=0.223 Sum_probs=28.7
Q ss_pred cCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEE
Q psy7039 192 TKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAH 227 (516)
Q Consensus 192 ~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~ 227 (516)
.....+|.|.+++.+|+|.|.|.+.+..+.....+.
T Consensus 64 ~~~~~sL~I~~v~~sD~G~Y~C~v~~~~~~~~~~v~ 99 (106)
T cd05714 64 DPGDASLVITDLRLEDSGRYRCEVIDGIEDEQDTVE 99 (106)
T ss_pred CCCcceEEECCCCHHHCEEEEEEEEcCCCceEEEEE
Confidence 346789999999999999999999986655444443
|
Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. |
| >cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA) | Back alignment and domain information |
|---|
Probab=97.88 E-value=8.4e-05 Score=60.33 Aligned_cols=91 Identities=12% Similarity=0.063 Sum_probs=50.2
Q ss_pred cccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeec---CcCceeeEEeeCCeeeccCC----ceEEe--
Q psy7039 120 TLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKL---SEPFLNHGWSINGQVCQIGG----RADVQ-- 190 (516)
Q Consensus 120 ~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~p~~~i~W~~~~~~~~~~~----~~~~~-- 190 (516)
.+..+.+.+|+.+.|.|.+.. ......+..+.|... +.....+..+.++....... |..+.
T Consensus 4 ~~~~v~~~~G~~v~L~C~~s~----------~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~ 73 (115)
T cd05880 4 TSKEVEAVNGTDVRLKCTFSS----------SAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGN 73 (115)
T ss_pred cCceEEEEcCCCEEEEEEEEe----------CCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecC
Confidence 456688999999999999870 000111233555321 11111111111111111122 22221
Q ss_pred ecCCeeEEEeccCCCCCCeeEEEEEEcCCC
Q psy7039 191 TTKSETVLDIPFCSRSDTGHYSLTLENNLG 220 (516)
Q Consensus 191 ~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g 220 (516)
......+|.|.+++.+|+|.|.|.+.|..+
T Consensus 74 ~~~~~~sL~I~~v~~~D~G~Y~C~v~~~~~ 103 (115)
T cd05880 74 IMRRDASILIWQLQPTDNGTYTCQVKNPPD 103 (115)
T ss_pred CcCCceEEEEeeCChhhCEEEEEEEEeCCC
Confidence 123467899999999999999999987544
|
Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development. |
| >cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan | Back alignment and domain information |
|---|
Probab=97.87 E-value=9.7e-05 Score=59.33 Aligned_cols=40 Identities=18% Similarity=0.322 Sum_probs=30.1
Q ss_pred ceEEee---cCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEE
Q psy7039 186 RADVQT---TKSETVLDIPFCSRSDTGHYSLTLENNLGTATAS 225 (516)
Q Consensus 186 ~~~~~~---~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~ 225 (516)
|+.+.. .....+|.|.+++.+|+|.|.|.+.+........
T Consensus 61 R~sl~~~~~~~~~asL~I~nl~~sDsG~Y~C~V~~g~~~~~~~ 103 (112)
T cd05900 61 RVSLPNYPAIPSDATLEITELRSNDSGTYRCEVMHGIEDNYDT 103 (112)
T ss_pred eEEecccCCCCCCcEEEEeecccccCEEEEEEEecCCCCceeE
Confidence 555543 4467899999999999999999998654444433
|
Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes. |
| >cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain | Back alignment and domain information |
|---|
Probab=97.84 E-value=7.3e-05 Score=60.94 Aligned_cols=87 Identities=10% Similarity=0.013 Sum_probs=51.3
Q ss_pred CcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCc---CceeeEEeeCCeeec----cCCceEEee
Q psy7039 119 STLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSE---PFLNHGWSINGQVCQ----IGGRADVQT 191 (516)
Q Consensus 119 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---p~~~i~W~~~~~~~~----~~~~~~~~~ 191 (516)
..+..+.+.+|+.++|.|...+ .-.....+.|++... |..-+.+...+.... ...|+.+..
T Consensus 3 Q~p~~~~~~~G~~v~l~C~~~~------------~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~ 70 (116)
T cd04982 3 QPQLSITREESKSVTISCKVSG------------IDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARK 70 (116)
T ss_pred CcCCeEEeCCCCCEEEEEEEeC------------CCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEE
Confidence 3456688899999999999871 001122344444311 111111221111110 135666655
Q ss_pred cC--CeeEEEeccCCCCCCeeEEEEEEc
Q psy7039 192 TK--SETVLDIPFCSRSDTGHYSLTLEN 217 (516)
Q Consensus 192 ~~--~~~~l~i~~~~~~d~g~Y~c~~~~ 217 (516)
.. ....|.|.+++.+|+|.|.|.+..
T Consensus 71 ~~~~~~~~L~I~~~~~~Dsg~Y~C~~~~ 98 (116)
T cd04982 71 DVGKSTSTLTIQNLEKEDSATYYCAYWE 98 (116)
T ss_pred ECCCCEEEEEEEECCHHHCEEEEEEEec
Confidence 54 567999999999999999999864
|
IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is |
| >cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP) | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00015 Score=58.07 Aligned_cols=79 Identities=15% Similarity=0.285 Sum_probs=56.4
Q ss_pred cCCeEEEEEEEeeec------CCceEEEECCee-------c-C----------CCCceEEEE-cCCeEEEEEcCceecCC
Q psy7039 369 AGEEFTITVPFSGRP------KPTPIWTVNGDE-------V-S----------PDGRIKFET-SENQTIYRNKSAKRATD 423 (516)
Q Consensus 369 ~g~~~~l~C~~~g~p------~~~i~W~~~~~~-------l-~----------~~~~~~~~~-~~~~~~l~i~~~~~~~~ 423 (516)
.|++++|.|.+...| ...|.|++.... + . ...++.+.. ..+..+|.|.++.. .|
T Consensus 1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~-~D 79 (106)
T cd05877 1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRAHDLDASLVITDLRL-ED 79 (106)
T ss_pred CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCCCCCcEEEEEccCCh-HH
Confidence 478999999987653 347999985310 0 0 012333321 13356899999999 99
Q ss_pred ceEEEEEEEcCCCceeEEEEEEEec
Q psy7039 424 SGSYTIQLVNTVGSDSASCKVYVVD 448 (516)
Q Consensus 424 ~g~y~c~a~n~~G~~s~s~~l~v~~ 448 (516)
+|.|.|.+.+..+.....+.|.|..
T Consensus 80 sG~Y~C~v~~~~~~~~~~~~l~v~~ 104 (106)
T cd05877 80 YGRYRCEVIDGLEDESVVVALRLRG 104 (106)
T ss_pred CEEEEEEEEecccceEEEEEEEEEE
Confidence 9999999999988888888888764
|
Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes. |
| >cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.0001 Score=59.48 Aligned_cols=72 Identities=17% Similarity=0.168 Sum_probs=53.8
Q ss_pred cccEEEEcCCeEEEEEEEeeecCCceEEEECCe--ec----------------CCCCceEEEEcC-CeEEEEEcCceecC
Q psy7039 362 IRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGD--EV----------------SPDGRIKFETSE-NQTIYRNKSAKRAT 422 (516)
Q Consensus 362 ~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~--~l----------------~~~~~~~~~~~~-~~~~l~i~~~~~~~ 422 (516)
+....+.+|++++|.|.+.+ +...+.|++... .. ....++...... ....|.|.++.. +
T Consensus 5 p~~~~v~~G~~v~l~C~~~~-~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~~~~-~ 82 (110)
T cd05899 5 PRYLIKGRGQSVTLRCSQTS-GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSLTRSSLTIKSAEP-E 82 (110)
T ss_pred CCceEEcCCCcEEEEEEECC-CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCCCccEEEECCCCh-h
Confidence 45678999999999999987 667899998532 10 012455544332 457899999999 9
Q ss_pred CceEEEEEEEcCC
Q psy7039 423 DSGSYTIQLVNTV 435 (516)
Q Consensus 423 ~~g~y~c~a~n~~ 435 (516)
|+|.|.|.+.+..
T Consensus 83 Dsg~Y~Ca~~~~~ 95 (110)
T cd05899 83 DSAVYLCASSLGG 95 (110)
T ss_pred hCEEEEEEeeCCC
Confidence 9999999998754
|
IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide. |
| >smart00060 FN3 Fibronectin type 3 domain | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00025 Score=52.67 Aligned_cols=76 Identities=42% Similarity=0.746 Sum_probs=53.9
Q ss_pred CCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCC----CeEEeEEeecCCcEEEeCCCcCCCeEEEEEEEe
Q psy7039 15 GKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTG----NWEKAVVVPAGETSCTVPGLIEGETYQFQVRAV 90 (516)
Q Consensus 15 ~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~----~~~~~~~~~~~~~~~~i~~l~~~~~y~~~~~a~ 90 (516)
.+|.++.+....+.++.|+|.+|...+. .+|.+.+..... .|...... .....+.|.+|.++..|.|+++|.
T Consensus 2 ~~p~~~~~~~~~~~~~~v~W~~~~~~~~---~~y~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~L~~~~~Y~v~v~a~ 77 (83)
T smart00060 2 SPPSNLRVTDVTSTSVTLSWEPPPDDGI---TGYIVGYRVEYREEGSSWKEVNVT-PSSTSYTLTGLKPGTEYEFRVRAV 77 (83)
T ss_pred CCCCcEEEEEEeCCEEEEEECCCCCCCC---CccEEEEEEEEecCCCccEEEEec-CCccEEEEeCcCCCCEEEEEEEEE
Confidence 4556678877778899999998642221 667777765332 25443333 226789999999999999999998
Q ss_pred cCCC
Q psy7039 91 NAAG 94 (516)
Q Consensus 91 n~~g 94 (516)
+..|
T Consensus 78 ~~~g 81 (83)
T smart00060 78 NGAG 81 (83)
T ss_pred cccC
Confidence 8644
|
One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins. |
| >cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00013 Score=55.26 Aligned_cols=55 Identities=13% Similarity=0.148 Sum_probs=37.8
Q ss_pred CcCceeeEEeeCCeeeccCCceE-EeecC----CeeEEEeccCCCCCCeeEEEEEEcCCC
Q psy7039 166 SEPFLNHGWSINGQVCQIGGRAD-VQTTK----SETVLDIPFCSRSDTGHYSLTLENNLG 220 (516)
Q Consensus 166 ~~p~~~i~W~~~~~~~~~~~~~~-~~~~~----~~~~l~i~~~~~~d~g~Y~c~~~~~~g 220 (516)
+.|.+.++|++++..+....... +...+ ..+.|.|.....+|.|.|+|.+.|...
T Consensus 11 ~~P~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~l 70 (82)
T cd05759 11 AKPAAEIIWFRDGEVLDGATYSKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNEAL 70 (82)
T ss_pred ccCCCEEEEEECCEEccCceeeeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCccC
Confidence 36888999999998875432111 11122 134788888888889999999988543
|
Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. |
| >cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.0002 Score=57.21 Aligned_cols=91 Identities=15% Similarity=0.123 Sum_probs=57.1
Q ss_pred CCeEEEEEeeeeccccccCccccccccccCccceeecC----cCceeeEEeeCCeee-cc--CCceEEee---cCCeeEE
Q psy7039 129 GQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLS----EPFLNHGWSINGQVC-QI--GGRADVQT---TKSETVL 198 (516)
Q Consensus 129 g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~p~~~i~W~~~~~~~-~~--~~~~~~~~---~~~~~~l 198 (516)
|..+.|.|.+. .+|. ......++.+.|.+.. .....+.|+.++... .. ..|..+.. .....+|
T Consensus 2 ~~~v~LpC~~~------~~p~-~~~~~~~~~I~W~k~~~~~~~~~~~v~v~~~~~~~~~~~y~gRvsl~~~~~~~~~asL 74 (110)
T cd05902 2 SSSVLLPCVFT------LPPS-ASSPPEGPRIKWTKLRPASGQKQRPVLVARDNVVRVAKAFQGRVSLPGYPKNRYNASL 74 (110)
T ss_pred CCcEEEeeEEE------cCcc-ccCCCCCCEEEEEEeCCCCCceEEEEEECCCCcEEEchhcccEEEeecCCCCCceEEE
Confidence 67899999987 1111 1123467888887752 123345566665432 22 24554432 2357899
Q ss_pred EeccCCCCCCeeEEEEEEcCCCceEEEE
Q psy7039 199 DIPFCSRSDTGHYSLTLENNLGTATASA 226 (516)
Q Consensus 199 ~i~~~~~~d~g~Y~c~~~~~~g~~~~~~ 226 (516)
.|.+++.+|+|.|.|.+.......+..+
T Consensus 75 ~i~nv~~~D~G~Y~C~v~~g~~~~~~~v 102 (110)
T cd05902 75 VLSRLRYSDSGTYRCEVVLGINDEQDTV 102 (110)
T ss_pred EECCCCHHHCEEEEEEEEECCcccEEEE
Confidence 9999999999999999987554444333
|
Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen |
| >cd00099 IgV Immunoglobulin variable domain (IgV) | Back alignment and domain information |
|---|
Probab=97.81 E-value=9.5e-05 Score=59.01 Aligned_cols=70 Identities=20% Similarity=0.265 Sum_probs=52.4
Q ss_pred EEEcCCeEEEEEEEeee-cCCceEEEECCee-----c------------CCCCceEEEEcC--CeEEEEEcCceecCCce
Q psy7039 366 TVLAGEEFTITVPFSGR-PKPTPIWTVNGDE-----V------------SPDGRIKFETSE--NQTIYRNKSAKRATDSG 425 (516)
Q Consensus 366 ~v~~g~~~~l~C~~~g~-p~~~i~W~~~~~~-----l------------~~~~~~~~~~~~--~~~~l~i~~~~~~~~~g 425 (516)
.+..|+.++|.|.+.+. +...+.|++.... + ....++.+.... ...+|+|.++.. .|.|
T Consensus 2 ~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~-~D~G 80 (105)
T cd00099 2 SVSEGESVTLSCTYSGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQP-EDSA 80 (105)
T ss_pred eecCCCCEEEEEEEeCCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCCH-HHCE
Confidence 46789999999999876 6668999985321 0 112345444433 567899999999 9999
Q ss_pred EEEEEEEcCCC
Q psy7039 426 SYTIQLVNTVG 436 (516)
Q Consensus 426 ~y~c~a~n~~G 436 (516)
.|.|.+.+..+
T Consensus 81 ~Y~C~v~~~~~ 91 (105)
T cd00099 81 VYYCAVSLSGG 91 (105)
T ss_pred EEEEEEecCCC
Confidence 99999998765
|
IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond. |
| >cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG) | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00035 Score=56.19 Aligned_cols=95 Identities=16% Similarity=0.168 Sum_probs=55.8
Q ss_pred CCeEEEEEeeeeccccccCccccccccccCccceeecC-cCceeeEEeeCCeeec-c--CCceEEe---ecCCeeEEEec
Q psy7039 129 GQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLS-EPFLNHGWSINGQVCQ-I--GGRADVQ---TTKSETVLDIP 201 (516)
Q Consensus 129 g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~p~~~i~W~~~~~~~~-~--~~~~~~~---~~~~~~~l~i~ 201 (516)
|+.+.|.|.+.. ...+..+-.-+..+.+.|.+.. .....+.++.++.... . .+|+.+. ......+|.|.
T Consensus 2 G~~V~LpC~~~~----~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~ 77 (110)
T cd05878 2 SSSVLLPCYFTL----PPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEIS 77 (110)
T ss_pred CCCEEEeeEeeC----CccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEEC
Confidence 789999999871 0000000012345677787652 2234445555444321 1 1344442 23456789999
Q ss_pred cCCCCCCeeEEEEEEcCCCceEEEEE
Q psy7039 202 FCSRSDTGHYSLTLENNLGTATASAH 227 (516)
Q Consensus 202 ~~~~~d~g~Y~c~~~~~~g~~~~~~~ 227 (516)
+++.+|+|.|.|.+.......+..+.
T Consensus 78 ~l~~sD~G~Y~C~v~~~~~~~~~~v~ 103 (110)
T cd05878 78 RLRSSDSGVYRCEVMHGIEDEQDTVP 103 (110)
T ss_pred CCChhhCEEEEEEEEeCCCcceEEEE
Confidence 99999999999999875544444443
|
Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi |
| >cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.0002 Score=56.27 Aligned_cols=34 Identities=15% Similarity=0.262 Sum_probs=26.6
Q ss_pred CeeEEEeccCCCCCCeeEEEEEEc-CCCceEEEEE
Q psy7039 194 SETVLDIPFCSRSDTGHYSLTLEN-NLGTATASAH 227 (516)
Q Consensus 194 ~~~~l~i~~~~~~d~g~Y~c~~~~-~~g~~~~~~~ 227 (516)
...+|.|.+++.+|+|.|.|.+.. ..|.......
T Consensus 60 ~~~sL~I~~v~~~D~G~Y~C~v~~~~~g~~~~~~~ 94 (98)
T cd05718 60 EDATISISNLRLEDEGNYICEFATFPQGNRQKVTT 94 (98)
T ss_pred CceEEEEccCCcccCEEEEEEEEeCCCCcEEEEEE
Confidence 467999999999999999999875 4555554443
|
Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c |
| >cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI | Back alignment and domain information |
|---|
Probab=97.78 E-value=8.4e-05 Score=57.90 Aligned_cols=68 Identities=7% Similarity=0.024 Sum_probs=47.0
Q ss_pred ceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEeecCCeeEEEecc
Q psy7039 123 DVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPF 202 (516)
Q Consensus 123 ~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~ 202 (516)
...|.+|+.++|+|... . +...+.|++++...................+.|.+
T Consensus 9 ~~vV~~G~~VTL~C~~~--------------------------~-~~~~f~l~k~g~~~~~~~~~~~~~~~~~a~f~I~~ 61 (94)
T cd05711 9 SPVVPSGENVTLQCHSD--------------------------I-RFDRFILYKEGRSKPVLHLYEKHHGGFQASFPLGP 61 (94)
T ss_pred CCccCCCCeEEEEEecC--------------------------C-CCCEEEEEECCCCCCceecccccCCeEEEEEEecC
Confidence 45678999999999876 3 44578888877653211000011133456899999
Q ss_pred CCCCCCeeEEEEEEc
Q psy7039 203 CSRSDTGHYSLTLEN 217 (516)
Q Consensus 203 ~~~~d~g~Y~c~~~~ 217 (516)
++.+|+|.|+|....
T Consensus 62 ~~~~~~G~Y~C~~~~ 76 (94)
T cd05711 62 VTPAHAGTYRCYGSY 76 (94)
T ss_pred CCcccCEEEEEEEEC
Confidence 999999999999763
|
IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another. |
| >cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP) | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00018 Score=57.58 Aligned_cols=36 Identities=17% Similarity=0.190 Sum_probs=28.9
Q ss_pred CCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEEe
Q psy7039 193 KSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHV 228 (516)
Q Consensus 193 ~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~ 228 (516)
....+|.|.+++.+|+|.|.|.+.+..+.....+.+
T Consensus 65 ~~~~sL~I~~v~~~DsG~Y~C~v~~~~~~~~~~~~l 100 (106)
T cd05877 65 DLDASLVITDLRLEDYGRYRCEVIDGLEDESVVVAL 100 (106)
T ss_pred CCcEEEEEccCChHHCEEEEEEEEecccceEEEEEE
Confidence 346789999999999999999998877766555433
|
Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes. |
| >cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG) | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.0002 Score=56.62 Aligned_cols=76 Identities=18% Similarity=0.225 Sum_probs=50.0
Q ss_pred CCeEEEEEEEeeecC---CceEEEECCe-----------ecC------CCCceEEEE---cCCeEEEEEcCceecCCceE
Q psy7039 370 GEEFTITVPFSGRPK---PTPIWTVNGD-----------EVS------PDGRIKFET---SENQTIYRNKSAKRATDSGS 426 (516)
Q Consensus 370 g~~~~l~C~~~g~p~---~~i~W~~~~~-----------~l~------~~~~~~~~~---~~~~~~l~i~~~~~~~~~g~ 426 (516)
|+++.|.|....... ..+.|++... ... ...++.+.. ..+..+|.|.++.. .|+|.
T Consensus 1 G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~-~D~G~ 79 (100)
T cd05713 1 GEDAELPCHLSPKMSAEHMEVRWFRSQFSPAVHLYRDGQDQYGEQMPEYRGRTELLKDAIAEGSVALRIHNVRA-SDEGL 79 (100)
T ss_pred CCcEEEEeEEcCCCCCCeeEEEEEECCCceeEEEEcCCcccccccCccccceEEeecccccCCcEEEEEEcCCh-hhCEE
Confidence 567888888753221 2577776431 111 012333321 23456899999999 99999
Q ss_pred EEEEEEcCCCceeEEEEEEE
Q psy7039 427 YTIQLVNTVGSDSASCKVYV 446 (516)
Q Consensus 427 y~c~a~n~~G~~s~s~~l~v 446 (516)
|+|.+.|..+.....+.|.|
T Consensus 80 Y~C~v~~~~~~~~~~i~l~v 99 (100)
T cd05713 80 YTCFFQSDGFYEEATVELKV 99 (100)
T ss_pred EEEEEecCCcEEEEEEEEEE
Confidence 99999998877777777665
|
Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM). |
| >KOG0613|consensus | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.0005 Score=74.88 Aligned_cols=342 Identities=18% Similarity=0.107 Sum_probs=185.5
Q ss_pred CCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCC-CeEEeEEeecCCcEEEeCCCcCCCeEEEEEEEecCC
Q psy7039 15 GKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTG-NWEKAVVVPAGETSCTVPGLIEGETYQFQVRAVNAA 93 (516)
Q Consensus 15 ~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~-~~~~~~~~~~~~~~~~i~~l~~~~~y~~~~~a~n~~ 93 (516)
.+|.+-....+...-+...|..|..+++..+..|+|+.+..++ .|............+.+.. ....+.++|.+.+..
T Consensus 141 ~~~~~~~sv~~~~~~v~~~~~~~~~d~~~k~~~~iie~~~~g~s~~~~~l~~~~~~s~~~~a~--~e~~v~~v~s~gqp~ 218 (1205)
T KOG0613|consen 141 PPPSNRESVLVHRARVLPAWRPPREDGGRKREEYIIERRQAGRSPWLKRLTQPTDDSTDTDAH--YESRVRAVVSAGQPE 218 (1205)
T ss_pred CCCCCccceeecCceecccccCCccCccceeecceEEEEeccCCCcccccccccCCcceeccc--cceeEEEEEecCCCc
Confidence 3445544456778889999999988999999999999998777 6655433323333333332 444555555553332
Q ss_pred CCCCCCCCCcceEeccCCCCCccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeE
Q psy7039 94 GPGEASKPTAPIVAKPKNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHG 173 (516)
Q Consensus 94 g~~~~s~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~ 173 (516)
+...+.... . .+.+. ..+..-.+..++...|.|.+. ...-+.+.
T Consensus 219 ~~~~~~~~g------~---~i~~~-~~~~~s~t~e~s~~~i~~~l~--------------------------~~~G~~~~ 262 (1205)
T KOG0613|consen 219 PLERWEILG------E---LIAPG-SAPSMSVTLEASDRKIQLTLR--------------------------APRGPYSA 262 (1205)
T ss_pred cchhhhhcc------c---ccCCC-CccccccccchhheeeeEEee--------------------------cCCCchHH
Confidence 222211100 0 11111 344445566788888999888 77777777
Q ss_pred EeeCCeeeccCCceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEEeeceee--------------eecccc
Q psy7039 174 WSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVTGTEF--------------TDNNVH 239 (516)
Q Consensus 174 W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~~~~~~--------------~~~~l~ 239 (516)
|..+....... .-+..+..|.+-...+.+.|+|...+..+............+ ....+.
T Consensus 263 ~~~~~l~e~~~-------~~~~~t~~i~~~~~~~~~s~t~~~~~~~~q~~~~v~~~~~i~~~~~~p~~~~~aaa~~~~~~ 335 (1205)
T KOG0613|consen 263 HILGYLIEQRK-------HKGGNTKTIQNDGPEPELSWTVADKRQGCQDRFKVTEEAPIGKGKPGPESLQAAAARPPEVP 335 (1205)
T ss_pred HHhcchhhhcc-------cCCCccccccccCCccccceeeecccCCcccceeeeEEeeccccccCchhhhhhccCCcccc
Confidence 77765443322 223446777777888888888888777666544432111111 111223
Q ss_pred CCceEEEEEEEEc---------cCCCCCce-eccccc-------ccceEEEEEecceeeEEEccCCCCCceEEEEEEEec
Q psy7039 240 EGKAYEYRVSAVN---------AAGTEKPK-ISLDAL-------IGKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKND 302 (516)
Q Consensus 240 ~g~~~~~~~~~~~---------~~g~p~p~-i~W~~~-------~~~~~~~~~~~~~~~l~i~~l~~~d~g~y~c~a~n~ 302 (516)
.|..+...+.+.+ ..|...|. +.|... .+.............+.|..+.+++.+.|.|.|.|.
T Consensus 336 v~~~~~~~v~a~d~~~v~m~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ts~~~~~~~~~~~e~~~~~~~a~n~ 415 (1205)
T KOG0613|consen 336 VGLVRNLSVTARDNTLVEMPTALSGTQKPDEAQGYHGEEVSSESLGALPCPVGTVTSHTYTIKDAGPGEGYFTRVPAVNK 415 (1205)
T ss_pred ccccccceeccccCcceeecccccCCcCCchheeecccccccccccccccccccccCcchhhhhcCcccccccccceecc
Confidence 3344444444321 13444443 444331 011112222445567888999999999999999999
Q ss_pred CCCcceeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcC--CeEEEEEEEe
Q psy7039 303 YGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAG--EEFTITVPFS 380 (516)
Q Consensus 303 ~g~~~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g--~~~~l~C~~~ 380 (516)
.|.........+...+.....+ .|..+ .......+ +.+.+.|...
T Consensus 416 ~g~~~~~~~~~vs~~~~gt~~~-------------~~kk~--------------------~~~t~~L~~~~~i~~~~~~~ 462 (1205)
T KOG0613|consen 416 GGTEQTIAESTVSEEMPGTQPP-------------KFKKD--------------------VSTTDLLTVKDEITVRTPDS 462 (1205)
T ss_pred CCcccccchhhcccccCCCCCc-------------ccccc--------------------ccccccccCCcccccccCCC
Confidence 8876544333333322211110 01100 11111222 5566777777
Q ss_pred eecCC--ceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCc
Q psy7039 381 GRPKP--TPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGS 437 (516)
Q Consensus 381 g~p~~--~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~ 437 (516)
+.+.+ .++|.+++... ...+.........+|.+.-... .+.+.|........|.
T Consensus 463 s~~~~~~~~tt~~~~~~~--s~~s~~l~r~~~tslLlk~~~~-~~~A~~~~a~~~~~~k 518 (1205)
T KOG0613|consen 463 STSMPMTTVTTIKDGLPL--SDRSVTLTRDVLTSLLLKVASL-SDGAQYTRALRTLQGK 518 (1205)
T ss_pred CccccceeEeeccCCccc--ccccccccccchhhheeeccCC-CccchhhhhhhccCCC
Confidence 76655 34444444322 2223333333445666766677 7888886655544444
|
|
| >cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain | Back alignment and domain information |
|---|
Probab=97.76 E-value=9.8e-05 Score=58.12 Aligned_cols=80 Identities=13% Similarity=0.141 Sum_probs=48.9
Q ss_pred EEecCCeEEEEEeeeeccccccCccccccccccCccceeecCc---CceeeEEeeCCeeeccCCceEEeecCCeeEEEec
Q psy7039 125 KIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSE---PFLNHGWSINGQVCQIGGRADVQTTKSETVLDIP 201 (516)
Q Consensus 125 ~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~ 201 (516)
.+.+|++++|.|.... .......+.|++... |..-+.+..+ .......|+.....+....|.|.
T Consensus 2 ~v~~G~~v~l~C~~~~------------~~~~~~~i~Wy~q~~g~~~~~l~~~~~~-~~~~~~~rf~~~~~~~~~~L~I~ 68 (98)
T cd04984 2 SVSPGETVTITCTGSS------------GNISGNYVNWYQQKPGSAPRYLIYEDSD-RPSGIPDRFSGSKSGNTASLTIS 68 (98)
T ss_pred ccCCCCCEEEEEEEcC------------CCcCCCCEEEEEECCCCCccEEEEeccc-cCCCCCCCEEEEccCCEEEEEEC
Confidence 4678999999999871 001223355544321 1111222111 11111346776666677899999
Q ss_pred cCCCCCCeeEEEEEEc
Q psy7039 202 FCSRSDTGHYSLTLEN 217 (516)
Q Consensus 202 ~~~~~d~g~Y~c~~~~ 217 (516)
+++.+|+|.|.|.+.+
T Consensus 69 ~~~~~Dsg~Y~C~~~~ 84 (98)
T cd04984 69 GAQTEDEADYYCQVWD 84 (98)
T ss_pred CCChhhCEEEEEEEcc
Confidence 9999999999999764
|
IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains. |
| >cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00014 Score=58.22 Aligned_cols=72 Identities=18% Similarity=0.145 Sum_probs=53.3
Q ss_pred cccEEEEcCCeEEEEEEEeeec-CCceEEEECCe--e---c---------CCCCceEEEEcCCeEEEEEcCceecCCceE
Q psy7039 362 IRDMTVLAGEEFTITVPFSGRP-KPTPIWTVNGD--E---V---------SPDGRIKFETSENQTIYRNKSAKRATDSGS 426 (516)
Q Consensus 362 ~~~~~v~~g~~~~l~C~~~g~p-~~~i~W~~~~~--~---l---------~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~ 426 (516)
+....+.+|++++|.|.+.+.. ...+.|++... . + ....++..........|.|.++.. .|+|.
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~-~Dsg~ 85 (106)
T cd04980 7 PATLSVSPGESATISCKASQSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSGSGTDFTLTISRVEP-EDAAV 85 (106)
T ss_pred CCcEEECCCCCEEEEEEECCCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEeccCCEEEEEECCCCh-HHCEE
Confidence 4567889999999999997665 56799987431 1 0 012356655455567899999999 99999
Q ss_pred EEEEEEcC
Q psy7039 427 YTIQLVNT 434 (516)
Q Consensus 427 y~c~a~n~ 434 (516)
|.|.+.+.
T Consensus 86 Y~Ca~~~~ 93 (106)
T cd04980 86 YYCQQYGT 93 (106)
T ss_pred EEEEEeCC
Confidence 99998764
|
IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains. |
| >cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00016 Score=57.26 Aligned_cols=26 Identities=27% Similarity=0.238 Sum_probs=23.0
Q ss_pred eeEEEeccCCCCCCeeEEEEEEcCCC
Q psy7039 195 ETVLDIPFCSRSDTGHYSLTLENNLG 220 (516)
Q Consensus 195 ~~~l~i~~~~~~d~g~Y~c~~~~~~g 220 (516)
+++|.|.+++.+|+|.|.|.+.+...
T Consensus 69 ngSL~I~~v~~~D~G~Y~~~v~~~~~ 94 (105)
T cd05774 69 NGSLLIQNVTQKDTGFYTLQTITTNF 94 (105)
T ss_pred CCcEEEecCCcccCEEEEEEEEeCCc
Confidence 45999999999999999999988663
|
IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D |
| >cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00017 Score=56.00 Aligned_cols=27 Identities=26% Similarity=0.409 Sum_probs=23.8
Q ss_pred eEEEeccCCCCCCeeEEEEEEcCCCce
Q psy7039 196 TVLDIPFCSRSDTGHYSLTLENNLGTA 222 (516)
Q Consensus 196 ~~l~i~~~~~~d~g~Y~c~~~~~~g~~ 222 (516)
.+|.|.+++.+|+|.|.|.+....+..
T Consensus 57 ~sL~I~~l~~~DsG~Y~c~v~~~~~~~ 83 (92)
T cd05741 57 GSLLIQNLTKEDSGTYTLQIISTNGVT 83 (92)
T ss_pred ceEEEccCCchhcEEEEEEEEcCCCcE
Confidence 799999999999999999998766443
|
Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf |
| >cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00017 Score=56.61 Aligned_cols=32 Identities=19% Similarity=0.335 Sum_probs=26.6
Q ss_pred ecCCeeEEEeccCCCCCCeeEEEEEEcCCCce
Q psy7039 191 TTKSETVLDIPFCSRSDTGHYSLTLENNLGTA 222 (516)
Q Consensus 191 ~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~ 222 (516)
......+|.|.+++.+|+|.|.|.+....|..
T Consensus 56 ~~~~~~sL~I~~~~~~DsG~Y~c~v~~~~~~~ 87 (97)
T cd05775 56 FSQNDYSLQISNLKMEDAGSYRAEINTKNGVT 87 (97)
T ss_pred ecCCceeEEECCCchHHCEEEEEEEEcCCCCe
Confidence 34556899999999999999999998766543
|
Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region |
| >cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00094 Score=53.61 Aligned_cols=95 Identities=16% Similarity=0.153 Sum_probs=58.4
Q ss_pred CCeEEEEEeeeeccccccC-ccccccccccCccceeecC-------cCceeeEEeeCCeeecc---CCceEEee---cCC
Q psy7039 129 GQSFSFDVKEFRELSYTKS-PLRALGVRANSTKGWVKLS-------EPFLNHGWSINGQVCQI---GGRADVQT---TKS 194 (516)
Q Consensus 129 g~~~~l~C~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-------~p~~~i~W~~~~~~~~~---~~~~~~~~---~~~ 194 (516)
|.++.|.|.+. +.+. |..+..-..++.+.|.+.. .....+.++.++..... ..|..+.. ..+
T Consensus 2 ~g~v~LPC~f~----~~p~~p~~~~~~~~~~rIkW~~~~~~~~g~~~~e~~Vlv~~~g~~~~~~~y~gRv~l~~~~~~~g 77 (117)
T cd05901 2 SGSVVLPCRFS----TLPTLPPSVITTSEFLRIKWTKIEVDKNGKDHKETTVLVAQNGIIKIGQEYMGRVSVPSHPEDQG 77 (117)
T ss_pred CCCEEEeeEEE----ecCCCCCcccCCCCCcEEEEEEecccccccCCCccEEEEEECCEEEECCcccCcEEeeccCCcCC
Confidence 57889999988 2111 1112344556777775541 12345556666543322 23444432 235
Q ss_pred eeEEEeccCCCCCCeeEEEEEEcCCCceEEEEE
Q psy7039 195 ETVLDIPFCSRSDTGHYSLTLENNLGTATASAH 227 (516)
Q Consensus 195 ~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~ 227 (516)
..+|.|.+++.+|+|.|+|.+..........+.
T Consensus 78 ~asL~i~~v~~sD~G~Y~C~V~~g~~~~~~~v~ 110 (117)
T cd05901 78 DASLTIVKLRASDAGVYRCEVMHGIEDTQDTVS 110 (117)
T ss_pred ceEEEEcccccccCEEEEEEEEECCcccEEEEE
Confidence 789999999999999999999876655554443
|
Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA |
| >cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00027 Score=57.56 Aligned_cols=91 Identities=13% Similarity=0.113 Sum_probs=50.5
Q ss_pred cccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCc---CceeeEEeeCCeeec-cC----CceEEee
Q psy7039 120 TLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSE---PFLNHGWSINGQVCQ-IG----GRADVQT 191 (516)
Q Consensus 120 ~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---p~~~i~W~~~~~~~~-~~----~~~~~~~ 191 (516)
.+..+.+.+|+.++|.|.+.. .........+.|..... +...+..+.++.... .. .|+.+..
T Consensus 4 ~p~~v~v~~G~~vtL~C~~s~----------~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~ 73 (116)
T cd05715 4 TPREVYAVNGSDVRLKCTFSS----------SEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVG 73 (116)
T ss_pred cCCeEEEEcCCCeEEEeEEeC----------CCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEec
Confidence 456688999999999999870 00001123355543211 111122222222111 12 2222221
Q ss_pred --cCCeeEEEeccCCCCCCeeEEEEEEcCCC
Q psy7039 192 --TKSETVLDIPFCSRSDTGHYSLTLENNLG 220 (516)
Q Consensus 192 --~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g 220 (516)
.....+|.|.+++.+|+|.|.|.+.+...
T Consensus 74 ~~~~~~~sL~I~~v~~~D~G~Y~C~v~~~~~ 104 (116)
T cd05715 74 NPSRKDASIVIHNLQFTDNGTYTCDVKNPPD 104 (116)
T ss_pred CCcCCeeEEEEeeCCcccCEEEEEEEEeCCC
Confidence 23457899999999999999999987543
|
Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2 |
| >cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00037 Score=54.75 Aligned_cols=75 Identities=19% Similarity=0.348 Sum_probs=50.4
Q ss_pred CeEEEEEEEeeec---CCceEEEECCee---------------cCC--CCceEEEEcC-CeEEEEEcCceecCCceEEEE
Q psy7039 371 EEFTITVPFSGRP---KPTPIWTVNGDE---------------VSP--DGRIKFETSE-NQTIYRNKSAKRATDSGSYTI 429 (516)
Q Consensus 371 ~~~~l~C~~~g~p---~~~i~W~~~~~~---------------l~~--~~~~~~~~~~-~~~~l~i~~~~~~~~~g~y~c 429 (516)
+++.|.|...... ...|.|++.... +.. ..+..+.... ...+|.|.++.. .|+|.|.|
T Consensus 1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~-~D~G~Y~C 79 (98)
T cd05718 1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSSLEDATISISNLRL-EDEGNYIC 79 (98)
T ss_pred CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCCCCceEEEEccCCc-ccCEEEEE
Confidence 4678999987654 337999986431 001 1122222111 456899999999 99999999
Q ss_pred EEEc-CCCceeEEEEEEE
Q psy7039 430 QLVN-TVGSDSASCKVYV 446 (516)
Q Consensus 430 ~a~n-~~G~~s~s~~l~v 446 (516)
.+.+ ..|.......|.|
T Consensus 80 ~v~~~~~g~~~~~~~l~V 97 (98)
T cd05718 80 EFATFPQGNRQKVTTLTV 97 (98)
T ss_pred EEEeCCCCcEEEEEEEEe
Confidence 9875 6787777777766
|
Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c |
| >cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins) | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00032 Score=57.35 Aligned_cols=92 Identities=17% Similarity=0.105 Sum_probs=51.3
Q ss_pred CcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCc--eeeEEeeC-Ceee--ccCCceEEe--e
Q psy7039 119 STLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPF--LNHGWSIN-GQVC--QIGGRADVQ--T 191 (516)
Q Consensus 119 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~--~~i~W~~~-~~~~--~~~~~~~~~--~ 191 (516)
..+..+.+.+|+.++|.|.+. .|.. ........+-|++...-. ..+..... .... .-..|+.+. .
T Consensus 4 q~P~~v~~~~G~~VtL~C~f~-------~~~~-~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~ 75 (119)
T cd05712 4 WMPKSVSVQEGLCVLIPCSFS-------YPAD-WPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDL 75 (119)
T ss_pred cCCCEEEEeccccEEEEEEee-------Cccc-ccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCC
Confidence 456678899999999999876 0100 001112234444431100 01111111 1111 012456553 3
Q ss_pred cCCeeEEEeccCCCCCCeeEEEEEEcC
Q psy7039 192 TKSETVLDIPFCSRSDTGHYSLTLENN 218 (516)
Q Consensus 192 ~~~~~~l~i~~~~~~d~g~Y~c~~~~~ 218 (516)
.....+|.|.+++.+|+|.|.|.+...
T Consensus 76 ~~~~~sL~I~~l~~~Dsg~Y~C~~~~~ 102 (119)
T cd05712 76 GKKNCSLLISDAQPEDSGKYFFRVELG 102 (119)
T ss_pred CCCEEEEEEccCChhhCeEEEEEEEcC
Confidence 455679999999999999999998653
|
Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11. |
| >cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0003 Score=57.28 Aligned_cols=71 Identities=13% Similarity=0.175 Sum_probs=53.8
Q ss_pred cccEEEEcCCeEEEEEEEee--ecCCceEEEECC--eec-----------------CCCCceEEEEcC--CeEEEEEcCc
Q psy7039 362 IRDMTVLAGEEFTITVPFSG--RPKPTPIWTVNG--DEV-----------------SPDGRIKFETSE--NQTIYRNKSA 418 (516)
Q Consensus 362 ~~~~~v~~g~~~~l~C~~~g--~p~~~i~W~~~~--~~l-----------------~~~~~~~~~~~~--~~~~l~i~~~ 418 (516)
+..+.+..|+.++|.|.+.+ .+.+.+.|++.. ... ....++.+.... ....|+|.++
T Consensus 5 p~~~~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~ 84 (116)
T cd04982 5 QLSITREESKSVTISCKVSGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTIQNL 84 (116)
T ss_pred CCeEEeCCCCCEEEEEEEeCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEEEEC
Confidence 45677889999999999977 667789999842 110 013466665544 5678999999
Q ss_pred eecCCceEEEEEEEc
Q psy7039 419 KRATDSGSYTIQLVN 433 (516)
Q Consensus 419 ~~~~~~g~y~c~a~n 433 (516)
.. .|+|.|.|.+..
T Consensus 85 ~~-~Dsg~Y~C~~~~ 98 (116)
T cd04982 85 EK-EDSATYYCAYWE 98 (116)
T ss_pred CH-HHCEEEEEEEec
Confidence 99 999999999864
|
IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is |
| >cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG) | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0005 Score=55.29 Aligned_cols=79 Identities=16% Similarity=0.335 Sum_probs=56.1
Q ss_pred cCCeEEEEEEEeeec----------CCceEEEECC--ee---c---------C--CCCceEEE---EcCCeEEEEEcCce
Q psy7039 369 AGEEFTITVPFSGRP----------KPTPIWTVNG--DE---V---------S--PDGRIKFE---TSENQTIYRNKSAK 419 (516)
Q Consensus 369 ~g~~~~l~C~~~g~p----------~~~i~W~~~~--~~---l---------~--~~~~~~~~---~~~~~~~l~i~~~~ 419 (516)
.|++++|.|.....+ ...|.|++.. .. + . -..|+.+. ...+..+|+|.++.
T Consensus 1 ~G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~ 80 (110)
T cd05878 1 LSSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLR 80 (110)
T ss_pred CCCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCC
Confidence 378899999986543 2479999852 11 0 0 11233332 22355789999999
Q ss_pred ecCCceEEEEEEEcCCCceeEEEEEEEec
Q psy7039 420 RATDSGSYTIQLVNTVGSDSASCKVYVVD 448 (516)
Q Consensus 420 ~~~~~g~y~c~a~n~~G~~s~s~~l~v~~ 448 (516)
. .|.|.|.|.+..........+.|.|.+
T Consensus 81 ~-sD~G~Y~C~v~~~~~~~~~~v~l~V~g 108 (110)
T cd05878 81 S-SDSGVYRCEVMHGIEDEQDTVPLEVTG 108 (110)
T ss_pred h-hhCEEEEEEEEeCCCcceEEEEEEEEE
Confidence 9 999999999998877788888888764
|
Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi |
| >cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA) | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0005 Score=55.81 Aligned_cols=75 Identities=24% Similarity=0.440 Sum_probs=50.8
Q ss_pred cccEEEEcCCeEEEEEEEeeec----CCceEEEEC----Cee--c---C------CCCce----EEE--EcCCeEEEEEc
Q psy7039 362 IRDMTVLAGEEFTITVPFSGRP----KPTPIWTVN----GDE--V---S------PDGRI----KFE--TSENQTIYRNK 416 (516)
Q Consensus 362 ~~~~~v~~g~~~~l~C~~~g~p----~~~i~W~~~----~~~--l---~------~~~~~----~~~--~~~~~~~l~i~ 416 (516)
+..+.+..|++++|.|.....+ ...|.|++. +.. + . ...+| .+. ...+..+|.|.
T Consensus 5 ~~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I~ 84 (115)
T cd05880 5 SKEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASILIW 84 (115)
T ss_pred CceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEEEEe
Confidence 4668899999999999986443 236999752 110 1 0 11122 111 12345679999
Q ss_pred CceecCCceEEEEEEEcCCCc
Q psy7039 417 SAKRATDSGSYTIQLVNTVGS 437 (516)
Q Consensus 417 ~~~~~~~~g~y~c~a~n~~G~ 437 (516)
+++. .|+|.|.|.+.|..+.
T Consensus 85 ~v~~-~D~G~Y~C~v~~~~~~ 104 (115)
T cd05880 85 QLQP-TDNGTYTCQVKNPPDV 104 (115)
T ss_pred eCCh-hhCEEEEEEEEeCCCC
Confidence 9999 9999999999987764
|
Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development. |
| >PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00013 Score=53.87 Aligned_cols=62 Identities=23% Similarity=0.363 Sum_probs=42.4
Q ss_pred EcCCeEEEEEEEeeec-CCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEc
Q psy7039 368 LAGEEFTITVPFSGRP-KPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVN 433 (516)
Q Consensus 368 ~~g~~~~l~C~~~g~p-~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n 433 (516)
..+..+.|.|.+.+.+ .+.+.|+ +.... ..............|.|.++.. +|.|.|+|.|.|
T Consensus 13 ~~~~~~~l~C~~~~~~~~~~~~W~-~~~~~--~~~~~~~~~~~~~~L~i~~v~~-~~~g~y~C~a~N 75 (75)
T PF13927_consen 13 TSGGSVTLTCSAEGGPPPPSISWY-DSNPS--FNSNSRGSSSSNSTLTISNVTR-SDNGTYTCIASN 75 (75)
T ss_dssp ETTEEEEEEEEESSEESSEEEEEE-TEEEE--EEEEEEEEEEEEEEEEESSCCG-GGTEEEEEEEEE
T ss_pred eeceeEEEEEEEccccCCeEEEEE-ecCCc--eeeeeeeccceeeEEEEccCCH-HhCcEEEEEEEC
Confidence 3333499999999888 7799999 11100 0011112223446799999999 999999999987
|
... |
| >cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00032 Score=55.19 Aligned_cols=68 Identities=22% Similarity=0.189 Sum_probs=50.7
Q ss_pred EEEcCCeEEEEEEEeee--cCCceEEEECCe--ec------------CCCCceEEEEcCCeEEEEEcCceecCCceEEEE
Q psy7039 366 TVLAGEEFTITVPFSGR--PKPTPIWTVNGD--EV------------SPDGRIKFETSENQTIYRNKSAKRATDSGSYTI 429 (516)
Q Consensus 366 ~v~~g~~~~l~C~~~g~--p~~~i~W~~~~~--~l------------~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c 429 (516)
.+..|++++|.|.+.+. ....+.|++... .. ....++..........|+|.++++ .|+|.|.|
T Consensus 2 ~v~~G~~v~l~C~~~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~-~Dsg~Y~C 80 (98)
T cd04984 2 SVSPGETVTITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKSGNTASLTISGAQT-EDEADYYC 80 (98)
T ss_pred ccCCCCCEEEEEEEcCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEccCCEEEEEECCCCh-hhCEEEEE
Confidence 46789999999998765 455799987432 11 112466666666677899999999 99999999
Q ss_pred EEEcC
Q psy7039 430 QLVNT 434 (516)
Q Consensus 430 ~a~n~ 434 (516)
.+.+.
T Consensus 81 ~~~~~ 85 (98)
T cd04984 81 QVWDS 85 (98)
T ss_pred EEccC
Confidence 98754
|
IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains. |
| >cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0) | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00063 Score=55.07 Aligned_cols=75 Identities=19% Similarity=0.274 Sum_probs=51.8
Q ss_pred cccEEEEcCCeEEEEEEEeeec----CCceEEEEC---------------CeecC-C----CCceEEE--EcCCeEEEEE
Q psy7039 362 IRDMTVLAGEEFTITVPFSGRP----KPTPIWTVN---------------GDEVS-P----DGRIKFE--TSENQTIYRN 415 (516)
Q Consensus 362 ~~~~~v~~g~~~~l~C~~~g~p----~~~i~W~~~---------------~~~l~-~----~~~~~~~--~~~~~~~l~i 415 (516)
...+.+..|+.+.|.|...... ...|.|.+. +.... . ..|..+. ...+..++.|
T Consensus 5 ~~ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daSI~I 84 (116)
T cd05879 5 DREVYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGSIVI 84 (116)
T ss_pred cceEEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeEEEE
Confidence 3557889999999999996542 348999442 22221 1 1233322 1235578999
Q ss_pred cCceecCCceEEEEEEEcCCCc
Q psy7039 416 KSAKRATDSGSYTIQLVNTVGS 437 (516)
Q Consensus 416 ~~~~~~~~~g~y~c~a~n~~G~ 437 (516)
.++.. .|.|.|+|.+.|.-+.
T Consensus 85 ~nv~~-sD~G~Y~C~v~n~p~~ 105 (116)
T cd05879 85 HNLDY-TDNGTFTCDVKNPPDI 105 (116)
T ss_pred ccCCc-ccCEEEEEEEEcCCCc
Confidence 99999 9999999999998664
|
Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. |
| >cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00027 Score=55.04 Aligned_cols=70 Identities=13% Similarity=-0.014 Sum_probs=47.6
Q ss_pred cccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEc
Q psy7039 362 IRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVN 433 (516)
Q Consensus 362 ~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n 433 (516)
.....+..|++++|.|.... ....+.|++++...................|.|..+.. .|+|.|+|....
T Consensus 7 ~p~~vV~~G~~VTL~C~~~~-~~~~f~l~k~g~~~~~~~~~~~~~~~~~a~f~I~~~~~-~~~G~Y~C~~~~ 76 (94)
T cd05711 7 HPSPVVPSGENVTLQCHSDI-RFDRFILYKEGRSKPVLHLYEKHHGGFQASFPLGPVTP-AHAGTYRCYGSY 76 (94)
T ss_pred cCCCccCCCCeEEEEEecCC-CCCEEEEEECCCCCCceecccccCCeEEEEEEecCCCc-ccCEEEEEEEEC
Confidence 34457889999999997754 44579999988643210000000122345789999999 999999999753
|
IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another. |
| >cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00044 Score=53.58 Aligned_cols=64 Identities=27% Similarity=0.355 Sum_probs=46.2
Q ss_pred CCeEEEEEEEeeecCCceEEEECCeecC------------------CCCceEEEEcCCeEEEEEcCceecCCceEEEEEE
Q psy7039 370 GEEFTITVPFSGRPKPTPIWTVNGDEVS------------------PDGRIKFETSENQTIYRNKSAKRATDSGSYTIQL 431 (516)
Q Consensus 370 g~~~~l~C~~~g~p~~~i~W~~~~~~l~------------------~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a 431 (516)
|++++|.|.........|.|++...... ...++.+. .+ .+|.|.++.. .|+|.|+|.+
T Consensus 1 G~~VtL~c~~~~~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~--~~-~sL~I~~l~~-~DsG~Y~c~v 76 (92)
T cd05741 1 GESVTLPVSNLPENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIY--PN-GSLLIQNLTK-EDSGTYTLQI 76 (92)
T ss_pred CCcEEEEcccCCCCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEc--CC-ceEEEccCCc-hhcEEEEEEE
Confidence 6789999988775556899998653211 01222222 22 6899999999 9999999999
Q ss_pred EcCCCc
Q psy7039 432 VNTVGS 437 (516)
Q Consensus 432 ~n~~G~ 437 (516)
....|.
T Consensus 77 ~~~~~~ 82 (92)
T cd05741 77 ISTNGV 82 (92)
T ss_pred EcCCCc
Confidence 988754
|
Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf |
| >PHA02987 Ig domain OX-2-like protein; Provisional | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00036 Score=59.90 Aligned_cols=71 Identities=13% Similarity=0.176 Sum_probs=50.9
Q ss_pred cceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeee----------cc--CCceE-
Q psy7039 122 NDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVC----------QI--GGRAD- 188 (516)
Q Consensus 122 ~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~----------~~--~~~~~- 188 (516)
..+.|.+|+++.|.|.... +....++.|++....+ .. .+|+.
T Consensus 23 ~~v~V~ege~VtLsCs~t~-------------------------s~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~ 77 (189)
T PHA02987 23 VKITVSEHVNVKISCNKTS-------------------------SFNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEY 77 (189)
T ss_pred EEEEEcCCCCEEEEEecCC-------------------------CCccceEEEEEcCCCEEEEecCCcEEChhhcCeEEE
Confidence 4578899999999999840 4456778888853222 11 13444
Q ss_pred EeecCCeeEEEeccCCCCCCeeEEEEEEc
Q psy7039 189 VQTTKSETVLDIPFCSRSDTGHYSLTLEN 217 (516)
Q Consensus 189 ~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~ 217 (516)
+......+.|.|.+++++|+|.|+|....
T Consensus 78 mS~s~~~StItIknVt~sDeGcY~C~F~t 106 (189)
T PHA02987 78 LSKSFNESTILIKNVSLKDNGCYTCIFNT 106 (189)
T ss_pred eccCCCcceEEEEeCChhhCeEEEEEEEe
Confidence 33445568999999999999999998753
|
|
| >cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00054 Score=55.78 Aligned_cols=85 Identities=16% Similarity=0.163 Sum_probs=50.2
Q ss_pred cccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcC-ceeeEEeeCCee-eccCCceEEee--cCCe
Q psy7039 120 TLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEP-FLNHGWSINGQV-CQIGGRADVQT--TKSE 195 (516)
Q Consensus 120 ~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~i~W~~~~~~-~~~~~~~~~~~--~~~~ 195 (516)
.+..+.+.+|+++.|.|.... ......+.|++.... .+.+.-+..... ....+|+.+.. ....
T Consensus 5 ~~~~v~~~~G~~v~L~C~~~~-------------~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~ 71 (116)
T cd07706 5 AQPDVSVQVGEEVTLNCRYET-------------SWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKS 71 (116)
T ss_pred eCCceEEcCCCCEEEEEEEeC-------------CCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCE
Confidence 445688999999999999871 002233445443110 111110111100 01135666542 3456
Q ss_pred eEEEeccCCCCCCeeEEEEEEc
Q psy7039 196 TVLDIPFCSRSDTGHYSLTLEN 217 (516)
Q Consensus 196 ~~l~i~~~~~~d~g~Y~c~~~~ 217 (516)
.+|.|.+++.+|+|.|.|.+..
T Consensus 72 ~sL~I~~~~~~Dsg~Y~C~~~~ 93 (116)
T cd07706 72 ISLTISALQLEDSAKYFCALST 93 (116)
T ss_pred EEEEECCCCHHHCEEEEEEEEC
Confidence 7999999999999999999874
|
IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is |
| >cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4 | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.001 Score=49.73 Aligned_cols=72 Identities=14% Similarity=0.267 Sum_probs=50.9
Q ss_pred EEecCCeEEEEEeeeeccccccCccccccccccCccceeecC--cCceeeEEeeCCeeeccCCceEEeecCCeeEEEecc
Q psy7039 125 KIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLS--EPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPF 202 (516)
Q Consensus 125 ~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~ 202 (516)
.+..|++++|.|... . .|.+.|.|..++...-. .......+|.+..
T Consensus 10 ~lL~G~sLtLtl~~~--------------------------s~s~p~~~i~w~~P~n~~~~------~~~~~~ktL~~~q 57 (88)
T cd07694 10 HVLSGTNLTLTLHGS--------------------------SNSLPAFKVEWRGPGNKSKQ------ILNQDKKTLNLVQ 57 (88)
T ss_pred eeecCCcEEEEEecC--------------------------CCCCCCccEEEeCCCCccce------eccCCccEEEece
Confidence 567899999999986 4 34559999986654321 1123456899999
Q ss_pred CCCCCCeeEEEEEEcCCCceEEEEEe
Q psy7039 203 CSRSDTGHYSLTLENNLGTATASAHV 228 (516)
Q Consensus 203 ~~~~d~g~Y~c~~~~~~g~~~~~~~~ 228 (516)
++..|+|.++|.+....-..+....+
T Consensus 58 v~~qdSG~WtC~V~~~~k~~~~~~~V 83 (88)
T cd07694 58 LGPNDSGTWDCIVSVNSSEKTLKLDI 83 (88)
T ss_pred eCcccCCEEEEEEEECceEEEEEeeE
Confidence 99999999999997544333333333
|
Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy. |
| >cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00054 Score=53.68 Aligned_cols=78 Identities=17% Similarity=0.278 Sum_probs=52.8
Q ss_pred EcCCeEEEEEEEee-ecCCceEEEECCeecC-------------CCCce--EEEEcCCeEEEEEcCceecCCceEEEEEE
Q psy7039 368 LAGEEFTITVPFSG-RPKPTPIWTVNGDEVS-------------PDGRI--KFETSENQTIYRNKSAKRATDSGSYTIQL 431 (516)
Q Consensus 368 ~~g~~~~l~C~~~g-~p~~~i~W~~~~~~l~-------------~~~~~--~~~~~~~~~~l~i~~~~~~~~~g~y~c~a 431 (516)
..|++++|.|.... .....+.|++....+. ...+| .+.......+|+|.++.. .|+|.|.|.+
T Consensus 2 ~~G~sVtL~c~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~~~-~DsG~Y~c~v 80 (97)
T cd05775 2 ILGGSVTLPLNIPDGTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNLKM-EDAGSYRAEI 80 (97)
T ss_pred ccCCeEEEeCCCCCCcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCCceeEEECCCch-HHCEEEEEEE
Confidence 36899999998754 4445789997642210 01122 223334557899999999 9999999999
Q ss_pred EcCCCce-eEEEEEEE
Q psy7039 432 VNTVGSD-SASCKVYV 446 (516)
Q Consensus 432 ~n~~G~~-s~s~~l~v 446 (516)
.+..|.. ...+.|.|
T Consensus 81 ~~~~~~~~~~~f~L~v 96 (97)
T cd05775 81 NTKNGVTITKEFTLHI 96 (97)
T ss_pred EcCCCCeEEEEEEEEe
Confidence 9888763 44555554
|
Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region |
| >cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00077 Score=53.43 Aligned_cols=77 Identities=18% Similarity=0.158 Sum_probs=51.2
Q ss_pred EEEEcCCeEEEEEEEeeecCCceEEEECCeecC-------------------CCCceEEEEcCCeEEEEEcCceecCCce
Q psy7039 365 MTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVS-------------------PDGRIKFETSENQTIYRNKSAKRATDSG 425 (516)
Q Consensus 365 ~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~-------------------~~~~~~~~~~~~~~~l~i~~~~~~~~~g 425 (516)
..+.+|+++.|.|.........+.|++...... ..++..+. ...+|.|.++.. .|+|
T Consensus 8 ~~~~~G~~V~L~v~~~p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~---~ngSL~I~~v~~-~D~G 83 (105)
T cd05774 8 PQVAEGENVLLLVHNLPENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIY---PNGSLLIQNVTQ-KDTG 83 (105)
T ss_pred CcccCCCCEEEEecCCCCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEe---CCCcEEEecCCc-ccCE
Confidence 357899999999876544444899999632110 01222222 124799999999 9999
Q ss_pred EEEEEEEcCCC-ceeEEEEEE
Q psy7039 426 SYTIQLVNTVG-SDSASCKVY 445 (516)
Q Consensus 426 ~y~c~a~n~~G-~~s~s~~l~ 445 (516)
.|.|.+.+... .......|.
T Consensus 84 ~Y~~~v~~~~~~~~~~~v~l~ 104 (105)
T cd05774 84 FYTLQTITTNFQVEQATVHLQ 104 (105)
T ss_pred EEEEEEEeCCccEEEEEEEEE
Confidence 99999999874 344444443
|
IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D |
| >cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR) | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00055 Score=53.83 Aligned_cols=81 Identities=16% Similarity=0.124 Sum_probs=46.7
Q ss_pred eEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCc-e-eeEEeeCCeeeccCCceEEee--cCCeeEEE
Q psy7039 124 VKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPF-L-NHGWSINGQVCQIGGRADVQT--TKSETVLD 199 (516)
Q Consensus 124 ~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~-~i~W~~~~~~~~~~~~~~~~~--~~~~~~l~ 199 (516)
+.+.+|++++|.|.... ......+-|++..... + .+. ......-....|+.+.. ......|.
T Consensus 2 v~~~~G~~vtl~C~~~~-------------~~~~~~~~W~r~~~~~~~~~l~-~~~~~~~~~~~r~~~~~~~~~~~~~L~ 67 (98)
T cd05716 2 VTGELGGSVTIPCPYPP-------------KNRSYEKYWCKWGSAGCCLIIV-SEGSVQSQYEGRVSLTDDPDNGVFTVT 67 (98)
T ss_pred EEEEeCCeEEEEeeCCC-------------CCCCcEeEeECCCCCCCCeEEE-CCCccccccCCCEEEEecCCCCEEEEE
Confidence 56789999999998871 0122334444432110 0 110 00000001134555532 34567999
Q ss_pred eccCCCCCCeeEEEEEEcC
Q psy7039 200 IPFCSRSDTGHYSLTLENN 218 (516)
Q Consensus 200 i~~~~~~d~g~Y~c~~~~~ 218 (516)
|.+++.+|+|.|.|.+...
T Consensus 68 I~~v~~~DsG~Y~C~~~~~ 86 (98)
T cd05716 68 LNQLRKEDAGWYWCGVGDD 86 (98)
T ss_pred EcCCCHHHCEEEEEEcccC
Confidence 9999999999999998754
|
Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions. |
| >cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0012 Score=52.02 Aligned_cols=30 Identities=17% Similarity=0.247 Sum_probs=24.6
Q ss_pred CCeeEEEeccCCCCCCeeEEEEEEc-CCCce
Q psy7039 193 KSETVLDIPFCSRSDTGHYSLTLEN-NLGTA 222 (516)
Q Consensus 193 ~~~~~l~i~~~~~~d~g~Y~c~~~~-~~g~~ 222 (516)
....+|.|.+++.+|+|.|.|.+.+ ..|..
T Consensus 61 ~~~~sL~I~nv~~sD~GtY~C~v~~~p~g~~ 91 (100)
T cd05888 61 IADGALILRNAVQADEGKYKCRVITFPAGNF 91 (100)
T ss_pred CCceEEEEecCccccceEEEEEEEeCCCCCe
Confidence 3467899999999999999999986 34443
|
Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult |
| >cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)) | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00095 Score=49.92 Aligned_cols=54 Identities=9% Similarity=0.019 Sum_probs=37.1
Q ss_pred CcCceeeEEeeCCeeeccCCceEEee---cCCeeEEEeccCCCCCCeeEEEEEEcCC
Q psy7039 166 SEPFLNHGWSINGQVCQIGGRADVQT---TKSETVLDIPFCSRSDTGHYSLTLENNL 219 (516)
Q Consensus 166 ~~p~~~i~W~~~~~~~~~~~~~~~~~---~~~~~~l~i~~~~~~d~g~Y~c~~~~~~ 219 (516)
+.|.+.|+|++++.++.......-.. ....++|.|..-..+|...|+|.+.|..
T Consensus 11 SkP~A~I~W~k~~~~l~~~~~~~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~~~ 67 (82)
T cd05883 11 SKPAATIRWFKGNKELTGKSTVEETWSRMFTVTSQLMLKVTKEDDGVPVICLVDHPA 67 (82)
T ss_pred CCCCCEEEEEECCEECcCcccceeccCCCcEEEEEEEEECchhhCCCEEEEEEcCcc
Confidence 78999999999999886542211111 1134577886666666667999998854
|
Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition. |
| >cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0018 Score=50.73 Aligned_cols=33 Identities=12% Similarity=0.226 Sum_probs=26.6
Q ss_pred CeeEEEeccCCCCCCeeEEEEEEc-CCCceEEEE
Q psy7039 194 SETVLDIPFCSRSDTGHYSLTLEN-NLGTATASA 226 (516)
Q Consensus 194 ~~~~l~i~~~~~~d~g~Y~c~~~~-~~g~~~~~~ 226 (516)
...+|.|.+++.+|+|.|+|.+.+ ..|..+..+
T Consensus 61 ~daSi~i~nl~~~D~G~Y~C~v~t~P~g~~~~~~ 94 (99)
T cd05886 61 EDGTISLSRLELEDEGVYICEFATFPTGNRESQL 94 (99)
T ss_pred CcceEEEcCCccccCEEEEEEEEeCCCCCeEEEE
Confidence 457999999999999999999998 455544433
|
Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is |
| >cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0014 Score=53.30 Aligned_cols=75 Identities=20% Similarity=0.386 Sum_probs=50.4
Q ss_pred cccEEEEcCCeEEEEEEEeeec----CCceEEEECCe------e-c--C-------CCCc----eEEE--EcCCeEEEEE
Q psy7039 362 IRDMTVLAGEEFTITVPFSGRP----KPTPIWTVNGD------E-V--S-------PDGR----IKFE--TSENQTIYRN 415 (516)
Q Consensus 362 ~~~~~v~~g~~~~l~C~~~g~p----~~~i~W~~~~~------~-l--~-------~~~~----~~~~--~~~~~~~l~i 415 (516)
+..+.+..|+.++|.|...... ...+.|++... . + . ...+ +.+. ...+..+|+|
T Consensus 5 p~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I 84 (116)
T cd05715 5 PREVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIVI 84 (116)
T ss_pred CCeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEEE
Confidence 4667889999999999986432 24699976321 0 0 0 1112 2221 1223468999
Q ss_pred cCceecCCceEEEEEEEcCCCc
Q psy7039 416 KSAKRATDSGSYTIQLVNTVGS 437 (516)
Q Consensus 416 ~~~~~~~~~g~y~c~a~n~~G~ 437 (516)
.+++. .|.|.|.|.+.|..+.
T Consensus 85 ~~v~~-~D~G~Y~C~v~~~~~~ 105 (116)
T cd05715 85 HNLQF-TDNGTYTCDVKNPPDI 105 (116)
T ss_pred eeCCc-ccCEEEEEEEEeCCCC
Confidence 99999 9999999999987654
|
Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2 |
| >cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0015 Score=51.53 Aligned_cols=74 Identities=18% Similarity=0.342 Sum_probs=48.8
Q ss_pred eEEEEEEEeeec---CCceEEEECCee--------cC--------C--CCceEEEE--cCCeEEEEEcCceecCCceEEE
Q psy7039 372 EFTITVPFSGRP---KPTPIWTVNGDE--------VS--------P--DGRIKFET--SENQTIYRNKSAKRATDSGSYT 428 (516)
Q Consensus 372 ~~~l~C~~~g~p---~~~i~W~~~~~~--------l~--------~--~~~~~~~~--~~~~~~l~i~~~~~~~~~g~y~ 428 (516)
++.|.|...... ...|.|++.... +. . .++..+.. .....+|+|.++.. .|.|.|.
T Consensus 2 ~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~Rv~f~~~~~~~~~sL~I~nv~~-sD~GtY~ 80 (100)
T cd05888 2 DTRLPCRYNVSDGETVVQVLWIRENAGGVEEEIALLHFKYGQTEFHAYEGRVRFETPNPIADGALILRNAVQ-ADEGKYK 80 (100)
T ss_pred CEEEEeEEecCCCCcEEEEEEEEccCCCCcEEEEEEeccCCcccCCCccCcEEEeCCCCCCceEEEEecCcc-ccceEEE
Confidence 577888875433 237888873210 00 0 12333332 23456899999999 9999999
Q ss_pred EEEEc-CCCceeEEEEEEE
Q psy7039 429 IQLVN-TVGSDSASCKVYV 446 (516)
Q Consensus 429 c~a~n-~~G~~s~s~~l~v 446 (516)
|.+.+ +.|..+....|+|
T Consensus 81 C~v~~~p~g~~~~~~~L~V 99 (100)
T cd05888 81 CRVITFPAGNFEAELVLTV 99 (100)
T ss_pred EEEEeCCCCCeeeEEEEEe
Confidence 99998 6777777777766
|
Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult |
| >PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0027 Score=51.10 Aligned_cols=84 Identities=25% Similarity=0.344 Sum_probs=56.6
Q ss_pred cccEEEEcCCeEEEEEEEe-eecCCceEEEECCe-----e-c-------------CCCCceEEEEc--CCeEEEEEcCce
Q psy7039 362 IRDMTVLAGEEFTITVPFS-GRPKPTPIWTVNGD-----E-V-------------SPDGRIKFETS--ENQTIYRNKSAK 419 (516)
Q Consensus 362 ~~~~~v~~g~~~~l~C~~~-g~p~~~i~W~~~~~-----~-l-------------~~~~~~~~~~~--~~~~~l~i~~~~ 419 (516)
+..+.+..|+++.|.|... ......+.|++... . + ....++.+... ....+|.|.++.
T Consensus 8 ~~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i~~l~ 87 (114)
T PF07686_consen 8 PSPVTVQEGESVTLPCSYSSSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTIKNLQ 87 (114)
T ss_dssp ESEEEEETTSEEEEEEEEESSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEESSES
T ss_pred CCeEEEecCCCEEEEEEEeCCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEECCCC
Confidence 4567899999999999998 44455899998432 0 1 01223333333 346789999999
Q ss_pred ecCCceEEEEEEEcCC-CceeEEEEEEE
Q psy7039 420 RATDSGSYTIQLVNTV-GSDSASCKVYV 446 (516)
Q Consensus 420 ~~~~~g~y~c~a~n~~-G~~s~s~~l~v 446 (516)
. .|+|.|.|.+.... ........|.|
T Consensus 88 ~-~DsG~Y~C~v~~~~~~~~~~~~~L~V 114 (114)
T PF07686_consen 88 P-SDSGTYFCQVSTSNEQSFGNGTKLTV 114 (114)
T ss_dssp G-GGEEEEEEEEEESSEEEEEEEEEEEE
T ss_pred c-CcCEEEEEEEEECCCCEECCcEEEEC
Confidence 9 99999999999872 22333444443
|
There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A .... |
| >cd00098 IgC Immunoglobulin Constant domain | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0013 Score=51.36 Aligned_cols=69 Identities=19% Similarity=0.246 Sum_probs=47.9
Q ss_pred EcCCeEEEEEEEeee-cC-CceEEEECCeecCCCCc-eEEEEcCC-----eEEEEEcCceecCCceEEEEEEEcCCCc
Q psy7039 368 LAGEEFTITVPFSGR-PK-PTPIWTVNGDEVSPDGR-IKFETSEN-----QTIYRNKSAKRATDSGSYTIQLVNTVGS 437 (516)
Q Consensus 368 ~~g~~~~l~C~~~g~-p~-~~i~W~~~~~~l~~~~~-~~~~~~~~-----~~~l~i~~~~~~~~~g~y~c~a~n~~G~ 437 (516)
..|..+.|.|.+.|. |. ..|.|+++|..+..... .......+ .+.|.|..... .+.+.|+|.|.+....
T Consensus 11 ~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~-~~~~~y~C~v~h~~~~ 87 (95)
T cd00098 11 LLGGSVTLTCLATGFYPPDITVTWLKNGKELTSGVTTTPPVPNSDGTYSVSSQLTVSPSDW-NSGDTYTCVVTHESLP 87 (95)
T ss_pred HcCCCeEEEEEEeeEECCCcEEEEEECCEECCCceeccccccCCCCCEEEEEEEEECHHHh-CCCCCEEEEEEeCCCC
Confidence 468899999999998 53 48999999988754432 11111111 13466666655 6999999999987654
|
IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions. |
| >cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0026 Score=50.88 Aligned_cols=78 Identities=17% Similarity=0.305 Sum_probs=54.3
Q ss_pred CCeEEEEEEEeeec-------CCceEEEECC-----ee---c-----------CCCCceEEEE---cCCeEEEEEcCcee
Q psy7039 370 GEEFTITVPFSGRP-------KPTPIWTVNG-----DE---V-----------SPDGRIKFET---SENQTIYRNKSAKR 420 (516)
Q Consensus 370 g~~~~l~C~~~g~p-------~~~i~W~~~~-----~~---l-----------~~~~~~~~~~---~~~~~~l~i~~~~~ 420 (516)
|..++|.|.+.-.| .+.|.|.+.. .. + .-.+|..+.. ..+..+|.|.++..
T Consensus 2 ~~~v~LpC~~~~~p~~~~~~~~~~I~W~k~~~~~~~~~~~v~v~~~~~~~~~~~y~gRvsl~~~~~~~~~asL~i~nv~~ 81 (110)
T cd05902 2 SSSVLLPCVFTLPPSASSPPEGPRIKWTKLRPASGQKQRPVLVARDNVVRVAKAFQGRVSLPGYPKNRYNASLVLSRLRY 81 (110)
T ss_pred CCcEEEeeEEEcCccccCCCCCCEEEEEEeCCCCCceEEEEEECCCCcEEEchhcccEEEeecCCCCCceEEEEECCCCH
Confidence 67889999975322 3589998751 10 0 0112334332 12457899999999
Q ss_pred cCCceEEEEEEEcCCCceeEEEEEEEec
Q psy7039 421 ATDSGSYTIQLVNTVGSDSASCKVYVVD 448 (516)
Q Consensus 421 ~~~~g~y~c~a~n~~G~~s~s~~l~v~~ 448 (516)
.|+|.|+|.+............|.|..
T Consensus 82 -~D~G~Y~C~v~~g~~~~~~~v~L~V~g 108 (110)
T cd05902 82 -SDSGTYRCEVVLGINDEQDTVPLEVTG 108 (110)
T ss_pred -HHCEEEEEEEEECCcccEEEEEEEEEE
Confidence 999999999999777788888888764
|
Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen |
| >cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0034 Score=49.16 Aligned_cols=74 Identities=16% Similarity=0.296 Sum_probs=49.6
Q ss_pred eEEEEEEEeee-cCC---ceEEEECCe----ec---C----------CCCceEEE-EcCCeEEEEEcCceecCCceEEEE
Q psy7039 372 EFTITVPFSGR-PKP---TPIWTVNGD----EV---S----------PDGRIKFE-TSENQTIYRNKSAKRATDSGSYTI 429 (516)
Q Consensus 372 ~~~l~C~~~g~-p~~---~i~W~~~~~----~l---~----------~~~~~~~~-~~~~~~~l~i~~~~~~~~~g~y~c 429 (516)
++.|.|..... +.. +|.|.+... .+ . ..++..+. ...+..+|.|.++.. .|.|.|.|
T Consensus 2 ~v~L~C~f~~~~~~~~~~~V~W~k~~~~~~~~va~y~~~~g~~~~~~f~~Rv~f~~~~~~daSi~i~nl~~-~D~G~Y~C 80 (99)
T cd05886 2 DVVLHCSFINPLPPVKITQVTWQKLTNGSKQNVAIYNPSMGVSVLPPYRERVTFKNPSFEDGTISLSRLEL-EDEGVYIC 80 (99)
T ss_pred cEEEEeEeecCCCCCCeEEEEEEECCCCCceEEEEECCcCCcccCccccCcEEEcCCCCCcceEEEcCCcc-ccCEEEEE
Confidence 57788988743 211 588987421 00 0 01222222 122447899999999 99999999
Q ss_pred EEEc-CCCceeEEEEEEE
Q psy7039 430 QLVN-TVGSDSASCKVYV 446 (516)
Q Consensus 430 ~a~n-~~G~~s~s~~l~v 446 (516)
.+.| +.|..+..+.|+|
T Consensus 81 ~v~t~P~g~~~~~~~L~V 98 (99)
T cd05886 81 EFATFPTGNRESQLNLTV 98 (99)
T ss_pred EEEeCCCCCeEEEEEEEE
Confidence 9999 7888888888877
|
Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is |
| >cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0012 Score=52.82 Aligned_cols=32 Identities=19% Similarity=0.219 Sum_probs=24.3
Q ss_pred CceEEe--ecCCeeEEEeccCCCCCCeeEEEEEE
Q psy7039 185 GRADVQ--TTKSETVLDIPFCSRSDTGHYSLTLE 216 (516)
Q Consensus 185 ~~~~~~--~~~~~~~l~i~~~~~~d~g~Y~c~~~ 216 (516)
.++.+. .......|.|.+++.+|+|.|.|...
T Consensus 59 ~rf~~~~~~~~~~~~L~I~~~~~~Dsg~YyCa~~ 92 (107)
T cd07700 59 EKFSIRVTSDSSRYRLHINRVKPEDSGTYFCMTV 92 (107)
T ss_pred CcEEEEEECCCCEEEEEECCCCHHHCEEEEEeEc
Confidence 355442 23445689999999999999999975
|
IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. |
| >cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)) | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0023 Score=48.39 Aligned_cols=54 Identities=13% Similarity=0.161 Sum_probs=35.4
Q ss_pred CcCceeeEEeeCCeeeccCCceEEeecCC------eeEEEeccCCCCCCeeEEEEEEcCCC
Q psy7039 166 SEPFLNHGWSINGQVCQIGGRADVQTTKS------ETVLDIPFCSRSDTGHYSLTLENNLG 220 (516)
Q Consensus 166 ~~p~~~i~W~~~~~~~~~~~~~~~~~~~~------~~~l~i~~~~~~d~g~Y~c~~~~~~g 220 (516)
+.|.+.|+|++++..+..... .+...+. .+.|.|.....++...|+|.+.+...
T Consensus 11 ~~P~~~ItW~k~g~~l~~~~~-~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~l 70 (83)
T cd07705 11 SKPAANIKWRKGDQELEGAPT-SVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHESL 70 (83)
T ss_pred ccCCCEeEEEECCEECCCcce-eEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECccc
Confidence 568899999999988765432 2222222 23455555556677789999987543
|
Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel |
| >cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.005 Score=49.48 Aligned_cols=39 Identities=10% Similarity=0.231 Sum_probs=34.7
Q ss_pred CeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEEEEec
Q psy7039 409 NQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVD 448 (516)
Q Consensus 409 ~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~v~~ 448 (516)
+..+|.|.++.. .|.|.|+|.+.+..........|.|..
T Consensus 77 g~asL~i~~v~~-sD~G~Y~C~V~~g~~~~~~~v~L~V~G 115 (117)
T cd05901 77 GDASLTIVKLRA-SDAGVYRCEVMHGIEDTQDTVSLDVSG 115 (117)
T ss_pred CceEEEEccccc-ccCEEEEEEEEECCcccEEEEEEEEEE
Confidence 457899999999 999999999999998888888888864
|
Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA |
| >cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively) | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0017 Score=49.06 Aligned_cols=56 Identities=9% Similarity=0.022 Sum_probs=33.9
Q ss_pred CcCceeeEEeeCCeeeccCCceEEeecC----CeeEEEeccCCCCCCeeEEEEEEcCCCc
Q psy7039 166 SEPFLNHGWSINGQVCQIGGRADVQTTK----SETVLDIPFCSRSDTGHYSLTLENNLGT 221 (516)
Q Consensus 166 ~~p~~~i~W~~~~~~~~~~~~~~~~~~~----~~~~l~i~~~~~~d~g~Y~c~~~~~~g~ 221 (516)
+.|.+.|+|++++..+...........+ ..+.|.+.....++.+.|+|.+.+....
T Consensus 11 ~~P~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~~l~ 70 (82)
T cd05761 11 SKPAATIRWFKGDKELKGVKLKEEDENGKTFTVTSSLRFQVDREDDGAPIICRVDHPALK 70 (82)
T ss_pred cCcCCeEEEEECCEEccCceeeEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeChhcC
Confidence 5688999999999888643211111111 1234455444455566899999876443
|
Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel |
| >cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR) | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0026 Score=49.95 Aligned_cols=70 Identities=17% Similarity=0.247 Sum_probs=50.1
Q ss_pred EEEEcCCeEEEEEEEee-ecCCceEEEECCeec-------------CCCCceEEEE--cCCeEEEEEcCceecCCceEEE
Q psy7039 365 MTVLAGEEFTITVPFSG-RPKPTPIWTVNGDEV-------------SPDGRIKFET--SENQTIYRNKSAKRATDSGSYT 428 (516)
Q Consensus 365 ~~v~~g~~~~l~C~~~g-~p~~~i~W~~~~~~l-------------~~~~~~~~~~--~~~~~~l~i~~~~~~~~~g~y~ 428 (516)
+.+.+|++++|.|.... .....+.|++..... ....++.+.. ......|+|.++.. .|+|.|.
T Consensus 2 v~~~~G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~-~DsG~Y~ 80 (98)
T cd05716 2 VTGELGGSVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRK-EDAGWYW 80 (98)
T ss_pred EEEEeCCeEEEEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCCH-HHCEEEE
Confidence 35789999999999865 345578999864211 1124555532 23456899999999 9999999
Q ss_pred EEEEcCC
Q psy7039 429 IQLVNTV 435 (516)
Q Consensus 429 c~a~n~~ 435 (516)
|.+....
T Consensus 81 C~~~~~~ 87 (98)
T cd05716 81 CGVGDDG 87 (98)
T ss_pred EEcccCC
Confidence 9987654
|
Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions. |
| >cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0015 Score=51.90 Aligned_cols=78 Identities=12% Similarity=0.186 Sum_probs=48.4
Q ss_pred EecCCeEEEEEeeeeccccccCccccccccccCccceeecCc---Cce-eeEEeeC-Ceee-c----cCCceEEeecCCe
Q psy7039 126 IKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSE---PFL-NHGWSIN-GQVC-Q----IGGRADVQTTKSE 195 (516)
Q Consensus 126 v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---p~~-~i~W~~~-~~~~-~----~~~~~~~~~~~~~ 195 (516)
+.+|+.++|.|...+ .....+-|++... ..+ -+..... .... . ...|+........
T Consensus 3 v~~G~~vtL~C~~~~--------------~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~~~~ 68 (104)
T cd05720 3 AELGQKVELKCEVLN--------------SSPTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRSSNS 68 (104)
T ss_pred ccCCCeEEEEEEecC--------------CCCCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEecCCE
Confidence 578999999998861 1234566766532 122 1222211 1111 1 1345665555567
Q ss_pred eEEEeccCCCCCCeeEEEEEEc
Q psy7039 196 TVLDIPFCSRSDTGHYSLTLEN 217 (516)
Q Consensus 196 ~~l~i~~~~~~d~g~Y~c~~~~ 217 (516)
..|.|.+++.+|+|.|.|...+
T Consensus 69 ~~L~I~~~~~sDsgtY~Ca~~~ 90 (104)
T cd05720 69 FVLTLKNFQKENEGYYFCSVAS 90 (104)
T ss_pred EEEEECCCCHHHCEEEEEEEcc
Confidence 7899999999999999998753
|
Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies. |
| >PF00041 fn3: Fibronectin type III domain; InterPro: IPR003961 Fibronectins are multi-domain glycoproteins found in a soluble form in plasma, and in an insoluble form in loose connective tissue and basement membranes [] | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0027 Score=48.07 Aligned_cols=79 Identities=24% Similarity=0.452 Sum_probs=55.0
Q ss_pred ceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEE
Q psy7039 325 IDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKF 404 (516)
Q Consensus 325 ~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~ 404 (516)
+.+..++.+++.|+|++|. .++..+.+|. |.|...+.. ......
T Consensus 6 l~v~~~~~~sv~v~W~~~~-~~~~~~~~y~--------------------------------v~~~~~~~~---~~~~~~ 49 (85)
T PF00041_consen 6 LSVSNISPTSVTVSWKPPS-SGNGPITGYR--------------------------------VEYRSVNST---SDWQEV 49 (85)
T ss_dssp EEEEEECSSEEEEEEEESS-STSSSESEEE--------------------------------EEEEETTSS---SEEEEE
T ss_pred eEEEECCCCEEEEEEECCC-CCCCCeeEEE--------------------------------EEEEecccc---eeeeee
Confidence 7888889999999999987 5666666662 333322211 012222
Q ss_pred EEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeE
Q psy7039 405 ETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSA 440 (516)
Q Consensus 405 ~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~ 440 (516)
........+.|.+|.+ ...|.|++.|.|..|.+..
T Consensus 50 ~~~~~~~~~~i~~L~p-~t~Y~~~v~a~~~~g~g~~ 84 (85)
T PF00041_consen 50 TVPGNETSYTITGLQP-GTTYEFRVRAVNSDGEGPP 84 (85)
T ss_dssp EEETTSSEEEEESCCT-TSEEEEEEEEEETTEEEEE
T ss_pred eeeeeeeeeeeccCCC-CCEEEEEEEEEeCCcCcCC
Confidence 2333444789999999 9999999999999986544
|
They contain multiple copies of 3 repeat regions (types I, II and III), which bind to a variety of substances including heparin, collagen, DNA, actin, fibrin and fibronectin receptors on cell surfaces. The wide variety of these substances means that fibronectins are involved in a number of important functions: e.g., wound healing; cell adhesion; blood coagulation; cell differentiation and migration; maintenance of the cellular cytoskeleton; and tumour metastasis []. The role of fibronectin in cell differentiation is demonstrated by the marked reduction in the expression of its gene when neoplastic transformation occurs. Cell attachment has been found to be mediated by the binding of the tetrapeptide RGDS to integrins on the cell surface [], although related sequences can also display cell adhesion activity. Plasma fibronectin occurs as a dimer of 2 different subunits, linked together by 2 disulphide bonds near the C terminus. The difference in the 2 chains occurs in the type III repeat region and is caused by alternative splicing of the mRNA from one gene []. The observation that, in a given protein, an individual repeat of one of the 3 types (e.g., the first FnIII repeat) shows much less similarity to its subsequent tandem repeats within that protein than to its equivalent repeat between fibronectins from other species, has suggested that the repeating structure of fibronectin arose at an early stage of evolution. It also seems to suggest that the structure is subject to high selective pressure []. The fibronectin type III repeat region is an approximately 100 amino acid domain, different tandem repeats of which contain binding sites for DNA, heparin and the cell surface []. The superfamily of sequences believed to contain FnIII repeats represents 45 different families, the majority of which are involved in cell surface binding in some manner, or are receptor protein tyrosine kinases, or cytokine receptors.; GO: 0005515 protein binding; PDB: 1UEM_A 1TDQ_A 1X5I_A 2IC2_B 2IBG_C 2IBB_A 3R8Q_A 2FNB_A 1FNH_A 2EDB_A .... |
| >cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4 | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0051 Score=46.06 Aligned_cols=76 Identities=17% Similarity=0.240 Sum_probs=53.1
Q ss_pred EEEEcCCeEEEEEEEeeecCC--ceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEEE
Q psy7039 365 MTVLAGEEFTITVPFSGRPKP--TPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASC 442 (516)
Q Consensus 365 ~~v~~g~~~~l~C~~~g~p~~--~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~ 442 (516)
..+..|++++|.|.....+.| .|.|...+.... .....+...|.+.++.. .|+|.++|.+....-......
T Consensus 9 ~~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~------~~~~~~~ktL~~~qv~~-qdSG~WtC~V~~~~k~~~~~~ 81 (88)
T cd07694 9 DHVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSK------QILNQDKKTLNLVQLGP-NDSGTWDCIVSVNSSEKTLKL 81 (88)
T ss_pred CeeecCCcEEEEEecCCCCCCCccEEEeCCCCccc------eeccCCccEEEeceeCc-ccCCEEEEEEEECceEEEEEe
Confidence 367899999999999765554 999986553211 11223445789999999 999999999975543444555
Q ss_pred EEEEe
Q psy7039 443 KVYVV 447 (516)
Q Consensus 443 ~l~v~ 447 (516)
.+.|.
T Consensus 82 ~V~Vl 86 (88)
T cd07694 82 DIKVL 86 (88)
T ss_pred eEEEE
Confidence 55553
|
Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy. |
| >cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0027 Score=49.71 Aligned_cols=76 Identities=17% Similarity=0.137 Sum_probs=50.1
Q ss_pred CCeEEEEEEEeeecCC-ceEEEECCee----c----C-C--------CCceEE-EEcCCeEEEEEcCceecCCceEEEEE
Q psy7039 370 GEEFTITVPFSGRPKP-TPIWTVNGDE----V----S-P--------DGRIKF-ETSENQTIYRNKSAKRATDSGSYTIQ 430 (516)
Q Consensus 370 g~~~~l~C~~~g~p~~-~i~W~~~~~~----l----~-~--------~~~~~~-~~~~~~~~l~i~~~~~~~~~g~y~c~ 430 (516)
|++++|.|........ .+.|++.... + . . ..++.+ .......+|+|.++.. +|.|.|+|.
T Consensus 1 G~~vtL~C~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~nv~~-~D~G~Y~C~ 79 (97)
T cd05846 1 GGNVTLSCNLTLPEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITSLGLNSTSITIWNVTL-EDEGCYKCI 79 (97)
T ss_pred CCcEEEEEEeCCCCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcCCCCCccEEEEeCCce-eeeEEEEEE
Confidence 6789999987544333 6899874321 0 0 0 112222 1123456899999999 999999999
Q ss_pred EE-cCCCceeEEEEEEE
Q psy7039 431 LV-NTVGSDSASCKVYV 446 (516)
Q Consensus 431 a~-n~~G~~s~s~~l~v 446 (516)
.. .+.|..+....|+|
T Consensus 80 ~~~~p~g~~~~~~~L~v 96 (97)
T cd05846 80 FNTFPDGSKSGTMCLTV 96 (97)
T ss_pred EEeCCCCCeeeEEEEEE
Confidence 76 46777777777766
|
Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion. |
| >cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0024 Score=51.97 Aligned_cols=72 Identities=19% Similarity=0.272 Sum_probs=52.6
Q ss_pred cccEEEEcCCeEEEEEEEeee-cCCceEEEECCe--e---c---------CCCCceEEEE--cCCeEEEEEcCceecCCc
Q psy7039 362 IRDMTVLAGEEFTITVPFSGR-PKPTPIWTVNGD--E---V---------SPDGRIKFET--SENQTIYRNKSAKRATDS 424 (516)
Q Consensus 362 ~~~~~v~~g~~~~l~C~~~g~-p~~~i~W~~~~~--~---l---------~~~~~~~~~~--~~~~~~l~i~~~~~~~~~ 424 (516)
+..+.+..|++++|.|..... ....+.|++... . + ...+++.+.. ..+..+|+|.++.. .|+
T Consensus 6 ~~~v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~-~Ds 84 (116)
T cd07706 6 QPDVSVQVGEEVTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISALQL-EDS 84 (116)
T ss_pred CCceEEcCCCCEEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCCCH-HHC
Confidence 456788999999999998654 445799997421 1 0 1135666542 34567899999999 999
Q ss_pred eEEEEEEEcC
Q psy7039 425 GSYTIQLVNT 434 (516)
Q Consensus 425 g~y~c~a~n~ 434 (516)
|.|.|.+...
T Consensus 85 g~Y~C~~~~~ 94 (116)
T cd07706 85 AKYFCALSTL 94 (116)
T ss_pred EEEEEEEECC
Confidence 9999999853
|
IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is |
| >cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0019 Score=50.35 Aligned_cols=69 Identities=16% Similarity=0.168 Sum_probs=46.4
Q ss_pred EecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCcee--eEEeeCCeeeccCCceEE--eecCCeeEEEec
Q psy7039 126 IKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLN--HGWSINGQVCQIGGRADV--QTTKSETVLDIP 201 (516)
Q Consensus 126 v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~--i~W~~~~~~~~~~~~~~~--~~~~~~~~l~i~ 201 (516)
+.+|+.++|.|.+.+ +.|.++ |.|++++..+........ .......+|.+.
T Consensus 13 ~~eG~~~tL~C~v~g-------------------------~~P~a~L~i~W~rG~~~l~~~~~~~~~~~~~~~~stlt~~ 67 (100)
T cd05755 13 QPVGKNYTLQCDVPG-------------------------VAPRQNLTVVLLRGNETLSRQPFGDNTKSPVNAPATITIT 67 (100)
T ss_pred ccCCCcEEEEEEEcC-------------------------cCCCCcEEEEEeeCCEEcccceeccccCCCceeEEEEEEe
Confidence 579999999999994 678776 699999988864321110 012234566665
Q ss_pred cCCCCCCe-eEEEEEEcCCC
Q psy7039 202 FCSRSDTG-HYSLTLENNLG 220 (516)
Q Consensus 202 ~~~~~d~g-~Y~c~~~~~~g 220 (516)
.. ++|.| .|+|.+.+..+
T Consensus 68 ~~-r~D~g~~~sC~A~l~l~ 86 (100)
T cd05755 68 VD-REDHGANFSCETELDLR 86 (100)
T ss_pred cc-hhhCCcEEEEEEEeccC
Confidence 44 55555 79999987544
|
Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites. |
| >cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0031 Score=49.43 Aligned_cols=25 Identities=20% Similarity=0.239 Sum_probs=22.1
Q ss_pred CCeeEEEeccCCCCCCeeEEEEEEc
Q psy7039 193 KSETVLDIPFCSRSDTGHYSLTLEN 217 (516)
Q Consensus 193 ~~~~~l~i~~~~~~d~g~Y~c~~~~ 217 (516)
....+|.|.+++.+|+|.|.|....
T Consensus 58 ~~~~sL~I~nv~~~D~G~Y~C~~~~ 82 (97)
T cd05846 58 LNSTSITIWNVTLEDEGCYKCIFNT 82 (97)
T ss_pred CCccEEEEeCCceeeeEEEEEEEEe
Confidence 4567999999999999999999864
|
Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion. |
| >cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0049 Score=47.86 Aligned_cols=74 Identities=19% Similarity=0.246 Sum_probs=50.1
Q ss_pred eEEEEEEEeeecC-CceEEEECCe----ec---C----------CCCceEEE-EcCCeEEEEEcCceecCCceEEEEEEE
Q psy7039 372 EFTITVPFSGRPK-PTPIWTVNGD----EV---S----------PDGRIKFE-TSENQTIYRNKSAKRATDSGSYTIQLV 432 (516)
Q Consensus 372 ~~~l~C~~~g~p~-~~i~W~~~~~----~l---~----------~~~~~~~~-~~~~~~~l~i~~~~~~~~~g~y~c~a~ 432 (516)
+++|.|.....+. .+|.|.+... .+ . ..++..+. ......+|.|.++.. .|.|.|+|.+.
T Consensus 2 ~vtL~C~~~~~~~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~~~~~~d~sl~i~nv~~-~D~G~Y~C~v~ 80 (96)
T cd05887 2 NVTLKCRIQVNETITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFKNYSLLDATIMLENVGF-SDIGVYICKAV 80 (96)
T ss_pred CEEEEEEecCCCcEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEcCCCCCccEEEEeCCCc-cccEEEEEEEE
Confidence 5778898864332 2789987421 11 0 01233332 223456899999999 99999999975
Q ss_pred -cCCCceeEEEEEEE
Q psy7039 433 -NTVGSDSASCKVYV 446 (516)
Q Consensus 433 -n~~G~~s~s~~l~v 446 (516)
.+.|...++..|+|
T Consensus 81 tfP~G~~~~~~~l~~ 95 (96)
T cd05887 81 TFPLGNTQSSTTVTV 95 (96)
T ss_pred eCCCCCeeEEEEEEE
Confidence 57899998888877
|
Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also |
| >PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0027 Score=51.08 Aligned_cols=86 Identities=17% Similarity=0.189 Sum_probs=50.2
Q ss_pred cccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcC--ceeeE-EeeCCeeec----cCCceEEeec
Q psy7039 120 TLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEP--FLNHG-WSINGQVCQ----IGGRADVQTT 192 (516)
Q Consensus 120 ~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p--~~~i~-W~~~~~~~~----~~~~~~~~~~ 192 (516)
++..+.+.+|+++.|.|... .......+.|++.... ...+. +..+..... ...++.+...
T Consensus 7 ~~~~v~~~~G~~v~L~C~~~-------------~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~ 73 (114)
T PF07686_consen 7 PPSPVTVQEGESVTLPCSYS-------------SSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGN 73 (114)
T ss_dssp EESEEEEETTSEEEEEEEEE-------------SSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEE
T ss_pred eCCeEEEecCCCEEEEEEEe-------------CCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeec
Confidence 35678899999999999987 0112233444442110 01111 111111110 1234443333
Q ss_pred --CCeeEEEeccCCCCCCeeEEEEEEcC
Q psy7039 193 --KSETVLDIPFCSRSDTGHYSLTLENN 218 (516)
Q Consensus 193 --~~~~~l~i~~~~~~d~g~Y~c~~~~~ 218 (516)
....+|.|.+++.+|+|.|.|.+...
T Consensus 74 ~~~~~~sL~i~~l~~~DsG~Y~C~v~~~ 101 (114)
T PF07686_consen 74 GSQNNFSLTIKNLQPSDSGTYFCQVSTS 101 (114)
T ss_dssp TTTTEEEEEESSESGGGEEEEEEEEEES
T ss_pred ccCCeEEEEECCCCcCcCEEEEEEEEEC
Confidence 34779999999999999999998765
|
There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A .... |
| >cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively) | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0041 Score=46.92 Aligned_cols=63 Identities=17% Similarity=0.230 Sum_probs=40.9
Q ss_pred EEEEEEEee-ecCCceEEEECCeecCCCCceEEEEcCC-----eEEEEEcCceecCCceEEEEEEEcCCCc
Q psy7039 373 FTITVPFSG-RPKPTPIWTVNGDEVSPDGRIKFETSEN-----QTIYRNKSAKRATDSGSYTIQLVNTVGS 437 (516)
Q Consensus 373 ~~l~C~~~g-~p~~~i~W~~~~~~l~~~~~~~~~~~~~-----~~~l~i~~~~~~~~~g~y~c~a~n~~G~ 437 (516)
+.|.|.+.+ .|.+.|.|++++..+.... .......+ .+.|.+.-... ++...|+|.|.|....
T Consensus 2 ~~L~C~~~~~~P~~~v~W~~~~~~l~~~~-~~~~~~~~~~~~~~s~l~~~~~~~-d~g~~~~C~v~h~~l~ 70 (82)
T cd05761 2 VELTCTSSGSKPAATIRWFKGDKELKGVK-LKEEDENGKTFTVTSSLRFQVDRE-DDGAPIICRVDHPALK 70 (82)
T ss_pred EEEEEEecCcCcCCeEEEEECCEEccCce-eeEecCCCCEEEEEEEEEEEcchh-hCCCEEEEEEeChhcC
Confidence 579999965 4888999999998875332 11111111 12344444444 5667999999998765
|
Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel |
| >cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)) | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0065 Score=45.94 Aligned_cols=63 Identities=13% Similarity=0.139 Sum_probs=42.4
Q ss_pred EEEEEEEeee-cCCceEEEECCeecCCCCceEEEEcCCe------EEEEEcCceecCCceEEEEEEEcCCCc
Q psy7039 373 FTITVPFSGR-PKPTPIWTVNGDEVSPDGRIKFETSENQ------TIYRNKSAKRATDSGSYTIQLVNTVGS 437 (516)
Q Consensus 373 ~~l~C~~~g~-p~~~i~W~~~~~~l~~~~~~~~~~~~~~------~~l~i~~~~~~~~~g~y~c~a~n~~G~ 437 (516)
+.|.|.+.|. |...|.|+++|..+..... .....+.. +.|.+.-... ++...|+|.|.+....
T Consensus 2 ~~LtC~a~g~~P~~~ItW~k~g~~l~~~~~-~~~~~~~~~t~~~~s~l~~~~~~~-d~g~~~tC~v~h~~l~ 71 (83)
T cd07705 2 AKLRCTSSGSKPAANIKWRKGDQELEGAPT-SVLEDGNGKTFTVSSSVEFQVTRE-DDGAEITCSVGHESLH 71 (83)
T ss_pred EEEEEEecCccCCCEeEEEECCEECCCcce-eEEECCCCCEEEEEEEEEEEecch-hCCCEEEEEEECcccC
Confidence 5799999764 8889999999988764432 22222221 2344434445 6778999999998754
|
Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel |
| >cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)) | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0033 Score=47.52 Aligned_cols=54 Identities=13% Similarity=0.104 Sum_probs=34.1
Q ss_pred CcCceeeEEeeCCeeeccCCceEEeecC-----CeeEEEeccCCCCCCeeEEEEEEcCC
Q psy7039 166 SEPFLNHGWSINGQVCQIGGRADVQTTK-----SETVLDIPFCSRSDTGHYSLTLENNL 219 (516)
Q Consensus 166 ~~p~~~i~W~~~~~~~~~~~~~~~~~~~-----~~~~l~i~~~~~~d~g~Y~c~~~~~~ 219 (516)
+.|.+.|+|++++..+............ ..+.|.|..-..++...|+|.+.+..
T Consensus 11 f~P~~~itW~kng~~l~~~~~~~~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~~ 69 (83)
T cd05884 11 SKPAADIRWFKNDKEIKDVKYLKEEDANRKTFTVSSTLDFRVDRSDDGVAIICRVDHES 69 (83)
T ss_pred ccCCCEEEEEECCEECcCceeeEeeCCCCCEEEEEEEEEEEcccccCCCEEEEEEechh
Confidence 5788999999999987543222222111 12356665555556667999998753
|
Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition. |
| >cd00098 IgC Immunoglobulin Constant domain | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0023 Score=49.88 Aligned_cols=68 Identities=13% Similarity=0.149 Sum_probs=47.3
Q ss_pred ecCCeEEEEEeeeeccccccCccccccccccCccceeecCc-C-ceeeEEeeCCeeeccCCc-eEEe--ecCC---eeEE
Q psy7039 127 KAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSE-P-FLNHGWSINGQVCQIGGR-ADVQ--TTKS---ETVL 198 (516)
Q Consensus 127 ~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p-~~~i~W~~~~~~~~~~~~-~~~~--~~~~---~~~l 198 (516)
..|+.+.|.|.+. |. | .+.|+|++++..+..... .... .++. .+.|
T Consensus 11 ~~~~~~~L~C~a~--------------------------g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l 64 (95)
T cd00098 11 LLGGSVTLTCLAT--------------------------GFYPPDITVTWLKNGKELTSGVTTTPPVPNSDGTYSVSSQL 64 (95)
T ss_pred HcCCCeEEEEEEe--------------------------eEECCCcEEEEEECCEECCCceeccccccCCCCCEEEEEEE
Confidence 4688999999999 65 5 478999999988865543 1111 1222 2345
Q ss_pred EeccCCCCCCeeEEEEEEcCCC
Q psy7039 199 DIPFCSRSDTGHYSLTLENNLG 220 (516)
Q Consensus 199 ~i~~~~~~d~g~Y~c~~~~~~g 220 (516)
.|......+.+.|+|.+.+...
T Consensus 65 ~v~~~~~~~~~~y~C~v~h~~~ 86 (95)
T cd00098 65 TVSPSDWNSGDTYTCVVTHESL 86 (95)
T ss_pred EECHHHhCCCCCEEEEEEeCCC
Confidence 6666666699999999988654
|
IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions. |
| >cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0069 Score=47.05 Aligned_cols=36 Identities=19% Similarity=0.225 Sum_probs=27.6
Q ss_pred cCCeeEEEeccCCCCCCeeEEEEEEc-CCCceEEEEE
Q psy7039 192 TKSETVLDIPFCSRSDTGHYSLTLEN-NLGTATASAH 227 (516)
Q Consensus 192 ~~~~~~l~i~~~~~~d~g~Y~c~~~~-~~g~~~~~~~ 227 (516)
.....+|.|.+++.+|+|.|+|.+.+ ..|...++..
T Consensus 56 ~~~d~sl~i~nv~~~D~G~Y~C~v~tfP~G~~~~~~~ 92 (96)
T cd05887 56 SLLDATIMLENVGFSDIGVYICKAVTFPLGNTQSSTT 92 (96)
T ss_pred CCCccEEEEeCCCccccEEEEEEEEeCCCCCeeEEEE
Confidence 34467999999999999999999754 4565555443
|
Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also |
| >cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0033 Score=51.16 Aligned_cols=86 Identities=19% Similarity=0.167 Sum_probs=49.3
Q ss_pred cccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCc-Ccee--eEEee-CCee-e--ccCCceEEeec
Q psy7039 120 TLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSE-PFLN--HGWSI-NGQV-C--QIGGRADVQTT 192 (516)
Q Consensus 120 ~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~--i~W~~-~~~~-~--~~~~~~~~~~~ 192 (516)
.+..+.+.+|++++|.|...+ .......+-|++... ..+. +..+. .+.. . ....|+.....
T Consensus 3 ~~~~~~v~~G~~vtL~C~~~~------------~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~ 70 (117)
T cd04981 3 ESGPGLVKPGQSLKLSCKASG------------FTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRD 70 (117)
T ss_pred cCCCeEEcCCCCEEEEEEEeC------------CCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEE
Confidence 345678899999999998761 001123355555422 1111 11111 1111 0 01245655533
Q ss_pred C--CeeEEEeccCCCCCCeeEEEEEEc
Q psy7039 193 K--SETVLDIPFCSRSDTGHYSLTLEN 217 (516)
Q Consensus 193 ~--~~~~l~i~~~~~~d~g~Y~c~~~~ 217 (516)
. ....|.|.+++.+|+|.|.|....
T Consensus 71 ~~~~~~~L~I~~~~~~Dsa~YyCa~~~ 97 (117)
T cd04981 71 TSKSTVYLQLNSLTPEDTAVYYCARGL 97 (117)
T ss_pred ccCCEEEEEECCCCHHHCEEEEEEEEc
Confidence 3 345799999999999999998764
|
IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains. |
| >PHA02987 Ig domain OX-2-like protein; Provisional | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0051 Score=52.97 Aligned_cols=87 Identities=16% Similarity=0.185 Sum_probs=63.8
Q ss_pred cccEEEEcCCeEEEEEEEe-eecCCceEEEECCeec----------CC--CCceE-EEEcCCeEEEEEcCceecCCceEE
Q psy7039 362 IRDMTVLAGEEFTITVPFS-GRPKPTPIWTVNGDEV----------SP--DGRIK-FETSENQTIYRNKSAKRATDSGSY 427 (516)
Q Consensus 362 ~~~~~v~~g~~~~l~C~~~-g~p~~~i~W~~~~~~l----------~~--~~~~~-~~~~~~~~~l~i~~~~~~~~~g~y 427 (516)
.....+.+|+++.|.|... +...+.+.|++....+ .. .+++. +..+...+.++|.++.. +|.|.|
T Consensus 22 ~~~v~V~ege~VtLsCs~t~s~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s~~~StItIknVt~-sDeGcY 100 (189)
T PHA02987 22 FVKITVSEHVNVKISCNKTSSFNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKSFNESTILIKNVSL-KDNGCY 100 (189)
T ss_pred eEEEEEcCCCCEEEEEecCCCCccceEEEEEcCCCEEEEecCCcEEChhhcCeEEEeccCCCcceEEEEeCCh-hhCeEE
Confidence 3456789999999999984 6567789999863211 11 12444 33444567899999999 999999
Q ss_pred EEEEEc-CCC-ceeEEEEEEEecC
Q psy7039 428 TIQLVN-TVG-SDSASCKVYVVDK 449 (516)
Q Consensus 428 ~c~a~n-~~G-~~s~s~~l~v~~~ 449 (516)
.|...- +.| ..+...-|+|++.
T Consensus 101 ~C~F~tfp~G~~~~gt~CLtVt~~ 124 (189)
T PHA02987 101 TCIFNTLLSKNNEKGVVCLNVTTD 124 (189)
T ss_pred EEEEEecCCCCCceeEEEEEEEch
Confidence 998764 456 6788888888763
|
|
| >cd00096 Ig Immunoglobulin domain | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.004 Score=44.48 Aligned_cols=54 Identities=20% Similarity=0.264 Sum_probs=38.9
Q ss_pred CcCceeeEEeeCCeeeccCCc----eEEeecCCeeEEEeccCCCCCCeeEEEEEEcCC
Q psy7039 166 SEPFLNHGWSINGQVCQIGGR----ADVQTTKSETVLDIPFCSRSDTGHYSLTLENNL 219 (516)
Q Consensus 166 ~~p~~~i~W~~~~~~~~~~~~----~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~ 219 (516)
+.+...+.|++++........ ...........|.|.++...|.|.|.|.+.+..
T Consensus 9 ~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~ 66 (74)
T cd00096 9 GPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSA 66 (74)
T ss_pred CCCCCcEEEEECCEECCCcccEEeccccCcceeEEEEEECccCcccCcEEEEEEecCc
Confidence 667789999998766543321 111123445689999999999999999998755
|
Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. |
| >cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.01 Score=46.07 Aligned_cols=33 Identities=18% Similarity=0.249 Sum_probs=26.2
Q ss_pred CeeEEEeccCCCCCCeeEEEEEEcC-CCceEEEE
Q psy7039 194 SETVLDIPFCSRSDTGHYSLTLENN-LGTATASA 226 (516)
Q Consensus 194 ~~~~l~i~~~~~~d~g~Y~c~~~~~-~g~~~~~~ 226 (516)
.+.+|.|.|++.+|+|.|+|.+... .|...+.+
T Consensus 58 ~d~sI~i~nvt~~D~G~Y~C~~~t~P~g~~~~~i 91 (96)
T cd05889 58 EDMSLSFNNATEEDVGLYCCSLVTYPQGSWEKVI 91 (96)
T ss_pred CccEEEEcCCCcccCEEEEEEEEeCCCCCeEEEE
Confidence 4689999999999999999998754 45554444
|
Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes. |
| >cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)) | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.01 Score=44.35 Aligned_cols=73 Identities=12% Similarity=0.071 Sum_probs=45.9
Q ss_pred EEEEEEEee-ecCCceEEEECCeecCCCCceEEEEcC---CeEEEEEcCceecCCceEEEEEEEcCCCc-eeEEEEEEE
Q psy7039 373 FTITVPFSG-RPKPTPIWTVNGDEVSPDGRIKFETSE---NQTIYRNKSAKRATDSGSYTIQLVNTVGS-DSASCKVYV 446 (516)
Q Consensus 373 ~~l~C~~~g-~p~~~i~W~~~~~~l~~~~~~~~~~~~---~~~~l~i~~~~~~~~~g~y~c~a~n~~G~-~s~s~~l~v 446 (516)
+.|.|.+.| .|...|.|++++..+............ ..+.|.|.--.. +|...|+|+|.|+.-. ...+..|.|
T Consensus 2 ~~L~C~s~gSkP~A~I~W~k~~~~l~~~~~~~~~~~~~~t~~S~L~~~p~~e-DdG~~~~C~a~~~~l~~~~~~~~L~V 79 (82)
T cd05883 2 IELNCTAMASKPAATIRWFKGNKELTGKSTVEETWSRMFTVTSQLMLKVTKE-DDGVPVICLVDHPAVKDLQTQRYLEV 79 (82)
T ss_pred EEEEEEecCCCCCCEEEEEECCEECcCcccceeccCCCcEEEEEEEEECchh-hCCCEEEEEEcCcccCCceeeEEEEE
Confidence 578999875 566799999999888543221111111 224677755555 7777899999997632 333344444
|
Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition. |
| >KOG4367|consensus | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0016 Score=62.20 Aligned_cols=110 Identities=25% Similarity=0.362 Sum_probs=76.6
Q ss_pred eeCCeeEEEecCCCCCCCCceeceEEEEEeCCC-CeEEeEEeecCCcEEEeCCCcCCCeEEEEEEEecCCCCCCCCCCCc
Q psy7039 25 WDKDHVDLQWTPPISDGGSPITGYVVEMKDKTG-NWEKAVVVPAGETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTA 103 (516)
Q Consensus 25 ~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~-~~~~~~~~~~~~~~~~i~~l~~~~~y~~~~~a~n~~g~~~~s~~~~ 103 (516)
...++++|+|+.|. ..+.++.+|.++....++ .|..+.. +.++.++|.+|..+..|.-++.+.|..|.++.++...
T Consensus 450 t~nns~t~~wkqp~-~~~~~~dg~~leld~g~~g~frevy~--g~etmctvdglhfns~y~arvka~n~tg~s~ys~tl~ 526 (699)
T KOG4367|consen 450 THNNSATLSWKQPP-LSTVPADGYILELDDGNGGQFREVYV--GKETMCTVDGLHFNSTYNARVKAFNKTGVSPYSKTLV 526 (699)
T ss_pred ccCCceEEEeecCC-CCCCCCcceEEEeecCCCCceeEEEe--cCceeEEecceecchhHHHHHHHhhccCCCcccceeE
Confidence 46788999999764 555789999999988555 6655443 4789999999999999999999999999998876443
Q ss_pred ceEeccCCCCCccccCcccceEEecCCeEEEEEeee
Q psy7039 104 PIVAKPKNLAPRIDRSTLNDVKIKAGQSFSFDVKEF 139 (516)
Q Consensus 104 ~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~ 139 (516)
..+..-.- ..+...+.+.--+...+.++|.|..-
T Consensus 527 lqts~vaw--fqlt~spsqrdmilsnecatlsgssl 560 (699)
T KOG4367|consen 527 LQTSEVAW--FQLTPSPSQRDMILSNECATLSGSSL 560 (699)
T ss_pred eeecceee--eeccCCchhhceeeecccceeccccc
Confidence 33322111 11121333334455667777777543
|
|
| >cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.0042 Score=49.31 Aligned_cols=66 Identities=14% Similarity=0.184 Sum_probs=46.7
Q ss_pred EEcCCeEEEEEEEeeecCCceEEEECCee----c------C------------CCCceEEEEcCCeEEEEEcCceecCCc
Q psy7039 367 VLAGEEFTITVPFSGRPKPTPIWTVNGDE----V------S------------PDGRIKFETSENQTIYRNKSAKRATDS 424 (516)
Q Consensus 367 v~~g~~~~l~C~~~g~p~~~i~W~~~~~~----l------~------------~~~~~~~~~~~~~~~l~i~~~~~~~~~ 424 (516)
+..|+.++|.|.+.......+.|++.... . . ...++..........|+|.+++. .|+
T Consensus 3 v~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~-sDs 81 (104)
T cd05720 3 AELGQKVELKCEVLNSSPTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRSSNSFVLTLKNFQK-ENE 81 (104)
T ss_pred ccCCCeEEEEEEecCCCCCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEecCCEEEEEECCCCH-HHC
Confidence 56899999999886554456889874321 0 0 02244444445667899999999 999
Q ss_pred eEEEEEEEc
Q psy7039 425 GSYTIQLVN 433 (516)
Q Consensus 425 g~y~c~a~n 433 (516)
|.|.|.+.+
T Consensus 82 gtY~Ca~~~ 90 (104)
T cd05720 82 GYYFCSVAS 90 (104)
T ss_pred EEEEEEEcc
Confidence 999998764
|
Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies. |
| >cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins) | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0078 Score=49.14 Aligned_cols=72 Identities=21% Similarity=0.249 Sum_probs=50.4
Q ss_pred cccEEEEcCCeEEEEEEEeeec------CCceEEEECCee------c---C--------CCCceEEE--EcCCeEEEEEc
Q psy7039 362 IRDMTVLAGEEFTITVPFSGRP------KPTPIWTVNGDE------V---S--------PDGRIKFE--TSENQTIYRNK 416 (516)
Q Consensus 362 ~~~~~v~~g~~~~l~C~~~g~p------~~~i~W~~~~~~------l---~--------~~~~~~~~--~~~~~~~l~i~ 416 (516)
+..+.+..|+.++|.|...... ...+.|++.... + . ...++.+. ...+..+|.|.
T Consensus 6 P~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~sL~I~ 85 (119)
T cd05712 6 PKSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCSLLIS 85 (119)
T ss_pred CCEEEEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEEEEEc
Confidence 4667899999999999875322 235899975321 0 0 11345442 24556789999
Q ss_pred CceecCCceEEEEEEEcC
Q psy7039 417 SAKRATDSGSYTIQLVNT 434 (516)
Q Consensus 417 ~~~~~~~~g~y~c~a~n~ 434 (516)
+++. .|+|.|.|++...
T Consensus 86 ~l~~-~Dsg~Y~C~~~~~ 102 (119)
T cd05712 86 DAQP-EDSGKYFFRVELG 102 (119)
T ss_pred cCCh-hhCeEEEEEEEcC
Confidence 9999 9999999998764
|
Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11. |
| >cd00096 Ig Immunoglobulin domain | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.0063 Score=43.38 Aligned_cols=62 Identities=31% Similarity=0.395 Sum_probs=44.5
Q ss_pred EEEEEEeeecCCceEEEECCeecCCCCc----eEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCC
Q psy7039 374 TITVPFSGRPKPTPIWTVNGDEVSPDGR----IKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVG 436 (516)
Q Consensus 374 ~l~C~~~g~p~~~i~W~~~~~~l~~~~~----~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G 436 (516)
.|.|.+.+.+...+.|.+++........ ...........|.|.++.. .|.|.|.|.+.+..+
T Consensus 2 ~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~-~d~g~y~C~~~~~~~ 67 (74)
T cd00096 2 TLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTL-EDSGTYTCVASNSAG 67 (74)
T ss_pred EEEEEecCCCCCcEEEEECCEECCCcccEEeccccCcceeEEEEEECccCc-ccCcEEEEEEecCcC
Confidence 5889998866779999998866533221 1111222346799999999 999999999988763
|
Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. |
| >cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.0059 Score=48.80 Aligned_cols=68 Identities=15% Similarity=0.216 Sum_probs=46.8
Q ss_pred EEEcCCeEEEEEEEeeec-CCceEEEECCee---c--------C-----------CCCceEEE--EcCCeEEEEEcCcee
Q psy7039 366 TVLAGEEFTITVPFSGRP-KPTPIWTVNGDE---V--------S-----------PDGRIKFE--TSENQTIYRNKSAKR 420 (516)
Q Consensus 366 ~v~~g~~~~l~C~~~g~p-~~~i~W~~~~~~---l--------~-----------~~~~~~~~--~~~~~~~l~i~~~~~ 420 (516)
.+..|++++|.|.+.+.. ...+.|++.... . . ...++... .......|+|.++..
T Consensus 2 ~v~~G~~vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~ 81 (107)
T cd07700 2 LVQTNNTVKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINRVKP 81 (107)
T ss_pred EEcCCCCEEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECCCCH
Confidence 467899999999987643 347999974321 0 0 02344432 223446799999999
Q ss_pred cCCceEEEEEEEcC
Q psy7039 421 ATDSGSYTIQLVNT 434 (516)
Q Consensus 421 ~~~~g~y~c~a~n~ 434 (516)
+|+|.|.|...+.
T Consensus 82 -~Dsg~YyCa~~~~ 94 (107)
T cd07700 82 -EDSGTYFCMTVGS 94 (107)
T ss_pred -HHCEEEEEeEcCC
Confidence 9999999998643
|
IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. |
| >cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)) | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.0083 Score=45.31 Aligned_cols=64 Identities=16% Similarity=0.211 Sum_probs=41.6
Q ss_pred EEEEEEEee-ecCCceEEEECCeecCCCCceEEEEcCC-----eEEEEEcCceecCCceEEEEEEEcCCCc
Q psy7039 373 FTITVPFSG-RPKPTPIWTVNGDEVSPDGRIKFETSEN-----QTIYRNKSAKRATDSGSYTIQLVNTVGS 437 (516)
Q Consensus 373 ~~l~C~~~g-~p~~~i~W~~~~~~l~~~~~~~~~~~~~-----~~~l~i~~~~~~~~~g~y~c~a~n~~G~ 437 (516)
+.|.|.+.| .|...|.|+++|..+............+ .+.|.+..-.. ++...|+|.|.+..-.
T Consensus 2 ~~LtC~a~gf~P~~~itW~kng~~l~~~~~~~~~~~~~~t~~~~s~L~~~~~~~-d~g~~ytC~v~h~~l~ 71 (83)
T cd05884 2 MQLTCKTSGSKPAADIRWFKNDKEIKDVKYLKEEDANRKTFTVSSTLDFRVDRS-DDGVAIICRVDHESLN 71 (83)
T ss_pred EEEEEEeCCccCCCEEEEEECCEECcCceeeEeeCCCCCEEEEEEEEEEEcccc-cCCCEEEEEEechhcC
Confidence 578999976 5667899999999875432222211111 13455554445 6677999999987644
|
Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition. |
| >cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.0059 Score=47.64 Aligned_cols=69 Identities=12% Similarity=0.204 Sum_probs=46.0
Q ss_pred EEEcCCeEEEEEEEee-ecCCc--eEEEECCeecCCCCceEEE---EcCCeEEEEEcCceecCCce-EEEEEEEcCCCc
Q psy7039 366 TVLAGEEFTITVPFSG-RPKPT--PIWTVNGDEVSPDGRIKFE---TSENQTIYRNKSAKRATDSG-SYTIQLVNTVGS 437 (516)
Q Consensus 366 ~v~~g~~~~l~C~~~g-~p~~~--i~W~~~~~~l~~~~~~~~~---~~~~~~~l~i~~~~~~~~~g-~y~c~a~n~~G~ 437 (516)
.+.+|+.++|.|.+.| .|.+. |.|++++..+.... +... ......++++.- .. +|.| .|+|+|.+.++.
T Consensus 12 ~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~~~-~~~~~~~~~~~~stlt~~~-~r-~D~g~~~sC~A~l~l~~ 87 (100)
T cd05755 12 WQPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSRQP-FGDNTKSPVNAPATITITV-DR-EDHGANFSCETELDLRP 87 (100)
T ss_pred cccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEcccce-eccccCCCceeEEEEEEec-ch-hhCCcEEEEEEEeccCc
Confidence 4689999999999976 55555 79999998875422 1110 011234566643 34 4555 899999998765
|
Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites. |
| >smart00406 IGv Immunoglobulin V-Type | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.0055 Score=45.82 Aligned_cols=30 Identities=30% Similarity=0.455 Sum_probs=24.2
Q ss_pred CceEEeec--CCeeEEEeccCCCCCCeeEEEE
Q psy7039 185 GRADVQTT--KSETVLDIPFCSRSDTGHYSLT 214 (516)
Q Consensus 185 ~~~~~~~~--~~~~~l~i~~~~~~d~g~Y~c~ 214 (516)
.|+.+... ....+|.|.+++.+|+|.|.|.
T Consensus 49 ~R~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~ 80 (81)
T smart00406 49 GRVTISKDTSKNDVSLTISNLRVEDTGTYYCA 80 (81)
T ss_pred CcEEEEecCcCCEEEEEEcCCCHHHCEEEEEc
Confidence 45555443 5668999999999999999996
|
|
| >PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.016 Score=44.44 Aligned_cols=67 Identities=7% Similarity=0.089 Sum_probs=42.5
Q ss_pred CCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCC-ceEEeec-CC---eeEEEeccC
Q psy7039 129 GQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGG-RADVQTT-KS---ETVLDIPFC 203 (516)
Q Consensus 129 g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~-~~~~~~~-~~---~~~l~i~~~ 203 (516)
|+.+.|.|...+ +.|.+.|+|+.++..+.... ....... +. .+.|.+..-
T Consensus 14 ~~~~~~~C~s~~-------------------------~~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~S~l~~~~~ 68 (89)
T PF08205_consen 14 GEEVTLTCSSSG-------------------------GYPPPQITWYLDGGPVVASNTTQSSSPDNGLFTVSSTLTLTPT 68 (89)
T ss_dssp TEEEEEEEEEEE-------------------------EBS-EEEEEEETTCEECEEEEEEEEETTTTTEEEEEEEEEETT
T ss_pred ceEEEEEEEeCC-------------------------eECCeEEEEEECCCceeeeeeeeeeccCCCcceEEEEEEEEcC
Confidence 679999998874 88999999999988772111 1111111 11 245666554
Q ss_pred CCCCCeeEEEEEEcCCC
Q psy7039 204 SRSDTGHYSLTLENNLG 220 (516)
Q Consensus 204 ~~~d~g~Y~c~~~~~~g 220 (516)
...+...++|.+.+..-
T Consensus 69 ~~~~~~~~~C~~~~~~~ 85 (89)
T PF08205_consen 69 REDHGKTLTCRASHPAL 85 (89)
T ss_dssp GGGTTEEEEEEEEETTC
T ss_pred hHHCCeEEEEEEECCcc
Confidence 44556679999987543
|
There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B .... |
| >KOG0613|consensus | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.01 Score=65.06 Aligned_cols=82 Identities=16% Similarity=0.068 Sum_probs=60.7
Q ss_pred cEEEEcCCeEEEEEEEeeecCCc-eEEEECCeecCCCC--ceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeE
Q psy7039 364 DMTVLAGEEFTITVPFSGRPKPT-PIWTVNGDEVSPDG--RIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSA 440 (516)
Q Consensus 364 ~~~v~~g~~~~l~C~~~g~p~~~-i~W~~~~~~l~~~~--~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~ 440 (516)
......+..+++.|...+...+. +.|++++.....+. .+..........+.|..+.+ .+.+.|.|.|.|..|....
T Consensus 343 ~v~a~d~~~v~m~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ts~~~~~~~~~~-~e~~~~~~~a~n~~g~~~~ 421 (1205)
T KOG0613|consen 343 SVTARDNTLVEMPTALSGTQKPDEAQGYHGEEVSSESLGALPCPVGTVTSHTYTIKDAGP-GEGYFTRVPAVNKGGTEQT 421 (1205)
T ss_pred eeccccCcceeecccccCCcCCchheeecccccccccccccccccccccCcchhhhhcCc-ccccccccceeccCCcccc
Confidence 34455667889999999988884 99998877654433 34444445566789999999 9999999999999998554
Q ss_pred EEEEEE
Q psy7039 441 SCKVYV 446 (516)
Q Consensus 441 s~~l~v 446 (516)
....++
T Consensus 422 ~~~~~v 427 (1205)
T KOG0613|consen 422 IAESTV 427 (1205)
T ss_pred cchhhc
Confidence 444444
|
|
| >cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.039 Score=44.20 Aligned_cols=68 Identities=13% Similarity=0.285 Sum_probs=41.7
Q ss_pred EEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcC-ceeeEEeeCCeeeccCCceEEeecCC------eeE
Q psy7039 125 KIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEP-FLNHGWSINGQVCQIGGRADVQTTKS------ETV 197 (516)
Q Consensus 125 ~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~i~W~~~~~~~~~~~~~~~~~~~~------~~~ 197 (516)
....|+.++|.|.+.+ ..| ...++|++|+..+..... .....+. .+.
T Consensus 17 ~~~~g~~~tL~C~a~g-------------------------F~P~~i~v~W~kng~~~~~~~~-~~~p~~d~~ty~~~S~ 70 (111)
T cd05772 17 RANPGQSVNFTCSAHG-------------------------FSPRDITVKWLKNGNELSAEQP-NITPEGDSVSYNVTST 70 (111)
T ss_pred ccCCCCCEEEEEEEee-------------------------EeCCCCEEEEEECCEECccccc-ceeeCCCCCcEEEEEE
Confidence 3456888999999993 345 479999999999864322 1221111 223
Q ss_pred EEeccCCCCCCee-EEEEEEcCC
Q psy7039 198 LDIPFCSRSDTGH-YSLTLENNL 219 (516)
Q Consensus 198 l~i~~~~~~d~g~-Y~c~~~~~~ 219 (516)
|.+.. ...|.|. |+|.+....
T Consensus 71 L~~~~-~~~d~~~~ytC~V~H~~ 92 (111)
T cd05772 71 VQVKL-TEDDVHSQVTCEVQHRT 92 (111)
T ss_pred EEEEC-ccccccCceEEEEEeCC
Confidence 44443 4444444 999987754
|
IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating |
| >PHA03376 BARF1; Provisional | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.04 Score=47.36 Aligned_cols=71 Identities=20% Similarity=0.251 Sum_probs=50.3
Q ss_pred cEEEEcCCeEEEEEEEee---ecCCceEEEECCe----ec-------------CCCCceEEEEcCCeEEEEEcCceecCC
Q psy7039 364 DMTVLAGEEFTITVPFSG---RPKPTPIWTVNGD----EV-------------SPDGRIKFETSENQTIYRNKSAKRATD 423 (516)
Q Consensus 364 ~~~v~~g~~~~l~C~~~g---~p~~~i~W~~~~~----~l-------------~~~~~~~~~~~~~~~~l~i~~~~~~~~ 423 (516)
.+.+..|+++.|.|.... .....|.|++.+. .+ ....++.+....+..+|.|.++.. .|
T Consensus 20 pVta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~~gnvsLvI~~l~l-SD 98 (221)
T PHA03376 20 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANI-SH 98 (221)
T ss_pred chhheeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEecCCeEEEEEEeeee-cC
Confidence 356789999999998752 2444899999421 11 112334443445677899999999 99
Q ss_pred ceEEEEEEEcCC
Q psy7039 424 SGSYTIQLVNTV 435 (516)
Q Consensus 424 ~g~y~c~a~n~~ 435 (516)
.|+|+|..+-..
T Consensus 99 dGtY~C~fQkge 110 (221)
T PHA03376 99 DGNYLCRMKLGE 110 (221)
T ss_pred CceEEEEEEcCC
Confidence 999999998754
|
|
| >TIGR00864 PCC polycystin cation channel protein | Back alignment and domain information |
|---|
Probab=96.26 E-value=4.4 Score=49.48 Aligned_cols=279 Identities=15% Similarity=0.181 Sum_probs=149.8
Q ss_pred CCCeEEEEEEEecCCCCCCCCCCCcceEeccCCCCCccccCcccc-eEEecCCeEEEEEeeeeccccccCcccccccccc
Q psy7039 79 EGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAPRIDRSTLND-VKIKAGQSFSFDVKEFRELSYTKSPLRALGVRAN 157 (516)
Q Consensus 79 ~~~~y~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~p~~~~~~~~~-~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~ 157 (516)
.-..|.+++.|.|..|... ....+.+..+..-+.|....+.. ..+..|..+.|.-...
T Consensus 1752 ~~G~y~VtVta~N~vss~~---~s~~V~VqepV~GL~i~~~~~~~~~~~~ag~~v~F~a~vs------------------ 1810 (2740)
T TIGR00864 1752 SAGLHLVTMKAFNELGSAN---ASEEVDVQEPISGLKIRAADAGEQNFFAADSSVCFQGELA------------------ 1810 (2740)
T ss_pred CCceEEEEEEEEccccccc---eeEEEEEEeccccceEecCCCCcccceecCcEEEEEEEcc------------------
Confidence 3458899999999887554 24445554443334443222211 1345566666666555
Q ss_pred CccceeecCcCceeeEEeeCCeeeccCCceEEeecCCeeEEEeccCCCCCCeeEEEE--EEcCCCceEEEEEeeceee--
Q psy7039 158 STKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLT--LENNLGTATASAHVTGTEF-- 233 (516)
Q Consensus 158 ~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~--~~~~~g~~~~~~~~~~~~~-- 233 (516)
...+....|..++..-..++.. ..+..+.|.|... +.|..+....+..+.+.+.
T Consensus 1811 --------tGsnVsw~W~f~~g~s~~gk~v--------------~~Tf~~aG~ytV~L~AsN~vs~~~~s~~~~VQe~I~ 1868 (2740)
T TIGR00864 1811 --------TGTNVSWCWAIDGGSSKMGKHA--------------CMTFPDAGTFAIRLNASNAVSGKSASREFFAEEPIF 1868 (2740)
T ss_pred --------CCCeeEEEEEeCCCCcccccee--------------EEecCCCeEEEEEEEEEcccCcceeeeeEEEEEecc
Confidence 4455677787764431111111 1345677888765 5566665554443332221
Q ss_pred ------eeccccCCceEEEEEEEEccCCCCCceecccccccceEEEEEecceeeEEEccCCCCCceEEEEEEEecCCCcc
Q psy7039 234 ------TDNNVHEGKAYEYRVSAVNAAGTEKPKISLDALIGKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDM 307 (516)
Q Consensus 234 ------~~~~l~~g~~~~~~~~~~~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~ 307 (516)
....+..|+..+|.+... .| +...+.|+-.++...... .. ....+.-..-..|..++.|.|..+...
T Consensus 1869 ~L~L~as~~~~~~n~~v~fsa~l~--~G-S~Vtf~w~fGdgs~~~~t-~~---~t~~HsY~~~G~Y~VtV~A~N~Vs~~~ 1941 (2740)
T TIGR00864 1869 GLELKASKKIAAIGEKVEFQILLA--AG-SAVNFRLQIGGAAPEVLQ-PG---PRFSHSFPRVDDHMVNLRAKNEVSCAQ 1941 (2740)
T ss_pred eEEEecccccccCCCEEEEEEEec--CC-CceEEEEEeCCCCceeec-CC---CeEEeecCCCCcEEEEEEEEeccceee
Confidence 223455788888888762 33 356666754333322211 11 111222333456777788889888877
Q ss_pred eeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeeecCCce
Q psy7039 308 ADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTP 387 (516)
Q Consensus 308 ~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i 387 (516)
....+.|..+-.- +.+.. . -...+..|+..+|.-.+....+..+
T Consensus 1942 a~~~V~Vle~V~g----L~I~~-------------------------------~-c~~~~~~g~~~tF~A~v~~g~~V~f 1985 (2740)
T TIGR00864 1942 ANLHIEVLEAVRG----LQIPD-------------------------------C-CAAGIATGEEKNFTANVQRGKPVAF 1985 (2740)
T ss_pred eeEEEEEEEeccc----eEecC-------------------------------C-cccceecCceEEEEEEEecCCceEE
Confidence 7777776543110 11000 0 0012567888888888766666678
Q ss_pred EEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEEEEecC
Q psy7039 388 IWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDK 449 (516)
Q Consensus 388 ~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~v~~~ 449 (516)
.|+..-..+..+.. +...+....+.... .-.+..++.|.|..|.......+.|..+
T Consensus 1986 ~W~f~~~~~~g~~~--~~~~G~~vty~~~~----~G~~~I~v~A~N~l~s~n~t~~i~VQ~~ 2041 (2740)
T TIGR00864 1986 AWTFDLHHLHGDSL--VIHMGKDVSYTAEA----AGLLEIQLGAFNALGAENITLQLEAQDA 2041 (2740)
T ss_pred EEEeeecccCCCcc--eeecCCceEEccCC----CcEEEEEEEEEcccCcccccEEEEEEeh
Confidence 99865333222222 11223333444422 2335557788899998777777777543
|
Note: this model has been restricted to the amino half because for technical reasons. |
| >cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.028 Score=45.70 Aligned_cols=71 Identities=15% Similarity=0.157 Sum_probs=49.2
Q ss_pred cccEEEEcCCeEEEEEEEeeec--CCceEEEECCe--e---c--------------CCCCceEEEEcC--CeEEEEEcCc
Q psy7039 362 IRDMTVLAGEEFTITVPFSGRP--KPTPIWTVNGD--E---V--------------SPDGRIKFETSE--NQTIYRNKSA 418 (516)
Q Consensus 362 ~~~~~v~~g~~~~l~C~~~g~p--~~~i~W~~~~~--~---l--------------~~~~~~~~~~~~--~~~~l~i~~~ 418 (516)
+....+..|+.++|.|...... ...+.|++... . + ...++|...... ....|+|.++
T Consensus 4 ~~~~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~ 83 (117)
T cd04981 4 SGPGLVKPGQSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLNSL 83 (117)
T ss_pred CCCeEEcCCCCEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEECCC
Confidence 3456789999999999875433 34689987321 1 0 012355554333 3457999999
Q ss_pred eecCCceEEEEEEEc
Q psy7039 419 KRATDSGSYTIQLVN 433 (516)
Q Consensus 419 ~~~~~~g~y~c~a~n 433 (516)
.. .|+|.|.|.+..
T Consensus 84 ~~-~Dsa~YyCa~~~ 97 (117)
T cd04981 84 TP-EDTAVYYCARGL 97 (117)
T ss_pred CH-HHCEEEEEEEEc
Confidence 99 999999998865
|
IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains. |
| >cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.011 Score=41.53 Aligned_cols=51 Identities=24% Similarity=0.233 Sum_probs=35.9
Q ss_pred ecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEeecCCeeEEEeccCCCC
Q psy7039 127 KAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFCSRS 206 (516)
Q Consensus 127 ~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~ 206 (516)
..|..|+|+|... +. .|.|.+++..+.. ....+.+.+-. +
T Consensus 5 isGTtVtlTCP~~--------------------------~~---~i~W~~n~~~~~g----------~~~~~~~~~~~-e 44 (65)
T cd07692 5 ISGTTVTVTCPLS--------------------------GD---DIKWKKNDQVSQG----------SDEKYLSLNHF-S 44 (65)
T ss_pred EeccEEEEECCCC--------------------------CC---CceEEeCCccCCC----------CCceEEeeccC-C
Confidence 4689999999865 32 2999998855542 22244555555 8
Q ss_pred CCeeEEEEEEc
Q psy7039 207 DTGHYSLTLEN 217 (516)
Q Consensus 207 d~g~Y~c~~~~ 217 (516)
+.|.|.|.+.+
T Consensus 45 ~~G~Y~C~~~~ 55 (65)
T cd07692 45 SSGYYHCTADN 55 (65)
T ss_pred CCceEEEEeCC
Confidence 89999999864
|
Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex. |
| >cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.07 Score=42.75 Aligned_cols=71 Identities=17% Similarity=0.179 Sum_probs=42.6
Q ss_pred EEEcCCeEEEEEEEeeecC--CceEEEECCeecCCCCceEEEEcCC-----eEEEEEcCceecCCce-EEEEEEEcCCCc
Q psy7039 366 TVLAGEEFTITVPFSGRPK--PTPIWTVNGDEVSPDGRIKFETSEN-----QTIYRNKSAKRATDSG-SYTIQLVNTVGS 437 (516)
Q Consensus 366 ~v~~g~~~~l~C~~~g~p~--~~i~W~~~~~~l~~~~~~~~~~~~~-----~~~l~i~~~~~~~~~g-~y~c~a~n~~G~ 437 (516)
....|+.++|.|.+.|.-+ ..+.|++||..+............+ .+.|.+.. .. .|.+ .|.|.+......
T Consensus 17 ~~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~~~~~~~~p~~d~~ty~~~S~L~~~~-~~-~d~~~~ytC~V~H~~l~ 94 (111)
T cd05772 17 RANPGQSVNFTCSAHGFSPRDITVKWLKNGNELSAEQPNITPEGDSVSYNVTSTVQVKL-TE-DDVHSQVTCEVQHRTLQ 94 (111)
T ss_pred ccCCCCCEEEEEEEeeEeCCCCEEEEEECCEECcccccceeeCCCCCcEEEEEEEEEEC-cc-ccccCceEEEEEeCCCC
Confidence 3456788999999987544 3899999998875322111111111 12344443 33 4444 499999887544
Q ss_pred e
Q psy7039 438 D 438 (516)
Q Consensus 438 ~ 438 (516)
.
T Consensus 95 ~ 95 (111)
T cd05772 95 A 95 (111)
T ss_pred C
Confidence 3
|
IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating |
| >PF01108 Tissue_fac: Tissue factor; PDB: 3OG4_B 3OG6_B 1FYH_E 1FG9_D 1JRH_I 3DGC_R 3DLQ_R 1LQS_R 1Y6M_R 1J7V_R | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.068 Score=42.61 Aligned_cols=79 Identities=24% Similarity=0.386 Sum_probs=56.7
Q ss_pred CCCCCCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEe-CCCCeEEeE-EeecCCcEEEeCCCc--CCCeEEEE
Q psy7039 11 FDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKD-KTGNWEKAV-VVPAGETSCTVPGLI--EGETYQFQ 86 (516)
Q Consensus 11 ~~~p~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~-~~~~~~~~~-~~~~~~~~~~i~~l~--~~~~y~~~ 86 (516)
.+...+|.++++.+. .-...|.|+++. +..+-..|.|+|+. .++.|.... =.....+.+.+++.. ....|.++
T Consensus 19 ~~~lp~P~nv~~~s~-nf~~iL~W~~~~--~~~~~~~ytVq~~~~~~~~W~~v~~C~~i~~~~Cdlt~~~~~~~~~Y~~r 95 (107)
T PF01108_consen 19 SASLPAPQNVTVDSV-NFKHILRWDPGP--GSPPNVTYTVQYKKYGSSSWKDVPGCQNITETSCDLTDETSDPSESYYAR 95 (107)
T ss_dssp -SSGSSCEEEEEEEE-TTEEEEEEEEST--TSSSTEEEEEEEEESSTSCEEEECCEEEESSSEEECTTCCTTTTSEEEEE
T ss_pred cccCCCCCeeEEEEE-CCceEEEeCCCC--CCCCCeEEEEEEEecCCcceeeccceecccccceeCcchhhcCcCCEEEE
Confidence 455668999999855 666899999953 22345789999994 444898762 233466888888755 68899999
Q ss_pred EEEecC
Q psy7039 87 VRAVNA 92 (516)
Q Consensus 87 ~~a~n~ 92 (516)
|+|...
T Consensus 96 V~A~~~ 101 (107)
T PF01108_consen 96 VRAEVG 101 (107)
T ss_dssp EEEEET
T ss_pred EEEEeC
Confidence 998653
|
... |
| >cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.072 Score=41.37 Aligned_cols=35 Identities=26% Similarity=0.265 Sum_probs=27.7
Q ss_pred CeEEEEEcCceecCCceEEEEEEEc-CCCceeEEEEE
Q psy7039 409 NQTIYRNKSAKRATDSGSYTIQLVN-TVGSDSASCKV 444 (516)
Q Consensus 409 ~~~~l~i~~~~~~~~~g~y~c~a~n-~~G~~s~s~~l 444 (516)
...+|.|.++.. .|.|.|+|.... +.|.....+.+
T Consensus 58 ~d~sI~i~nvt~-~D~G~Y~C~~~t~P~g~~~~~i~~ 93 (96)
T cd05889 58 EDMSLSFNNATE-EDVGLYCCSLVTYPQGSWEKVIEV 93 (96)
T ss_pred CccEEEEcCCCc-ccCEEEEEEEEeCCCCCeEEEEEE
Confidence 346899999999 999999999876 46776665544
|
Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes. |
| >cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.063 Score=41.52 Aligned_cols=65 Identities=12% Similarity=0.149 Sum_probs=35.6
Q ss_pred CCeEEEEEeeeeccccccCccccccccccCccceeecC-cCc-eeeEEeeCCeeeccCCc-eEEee--cCCeeEEEeccC
Q psy7039 129 GQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLS-EPF-LNHGWSINGQVCQIGGR-ADVQT--TKSETVLDIPFC 203 (516)
Q Consensus 129 g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~p~-~~i~W~~~~~~~~~~~~-~~~~~--~~~~~~l~i~~~ 203 (516)
++.+.|.|.+. | .|. ..++|.+++..+..... ..... ++.......-.+
T Consensus 14 ~~~~~L~C~a~--------------------------gF~P~~i~v~W~~~g~~~~~~~~~~~~~~~~d~ty~~~s~l~v 67 (93)
T cd07698 14 DGSLTLSCHAT--------------------------GFYPRDIEVTWLRDGEDSVDDVESGEILPNGDGTYQLWVTLEV 67 (93)
T ss_pred CCcEEEEEEEE--------------------------EEeCCCcEEEEEECCEECcccccccceEECCCCeEEEEEEEEE
Confidence 67899999999 5 344 58999999864332211 11111 111111222233
Q ss_pred CCCCCeeEEEEEEcCC
Q psy7039 204 SRSDTGHYSLTLENNL 219 (516)
Q Consensus 204 ~~~d~g~Y~c~~~~~~ 219 (516)
...+...|+|.+.+..
T Consensus 68 ~~~~~~~ytC~V~H~~ 83 (93)
T cd07698 68 PPEDKARYSCRVEHSG 83 (93)
T ss_pred CCCCCCEEEEEEEeCC
Confidence 3346677888876543
|
IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells. |
| >KOG4258|consensus | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.089 Score=55.41 Aligned_cols=156 Identities=17% Similarity=0.219 Sum_probs=84.8
Q ss_pred ceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEE
Q psy7039 325 IDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKF 404 (516)
Q Consensus 325 ~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~ 404 (516)
+.....+.+++.++|..-.-.+-....+|.....+.+.++.+...|..+ | -...|...........
T Consensus 494 ~~~~~~~~dsi~lrW~~~~~~d~r~llg~~~~yKEaP~qNvT~~dg~~a---C-------g~~~W~~~~v~~~~~~---- 559 (1025)
T KOG4258|consen 494 FSSTVTSADSILLRWERYQPPDMRDLLGFLLHYKEAPFQNVTEEDGRDA---C-------GSNSWNVVDVDPPDLI---- 559 (1025)
T ss_pred eeeEEeecceeEEEecccCCcchhhhheeeEeeccCCccccceecCccc---c-------ccCcceEEeccCCcCC----
Confidence 3445568889999998533322333344432223333333444444332 1 1345654433222000
Q ss_pred EEcCCeEEEEEcCceecCCceEEEEEEEcC--CCc--eeEEEEEEEecCCCCCCCCccc--ccccCCeEEEEeeCCCCCC
Q psy7039 405 ETSENQTIYRNKSAKRATDSGSYTIQLVNT--VGS--DSASCKVYVVDKPSPPQGPLDV--SDITPESCSLSWKPPLDDG 478 (516)
Q Consensus 405 ~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~--~G~--~s~s~~l~v~~~p~~P~~~l~~--~~~~~~~~~l~W~~p~~~~ 478 (516)
...+...-..+.++.+ .+.|.|.+.+... .+. ...+-...|++.|..|..++.+ ..-+++.+.|+|+||.. .
T Consensus 560 p~~~~~~~~~l~~LkP-~TqYAvfVkT~t~t~~~~~~~A~S~I~YvqT~~~~PspPl~~ls~snsSsqi~l~W~pP~~-p 637 (1025)
T KOG4258|consen 560 PNDGTHPGFLLDGLKP-WTQYAVFVKTLTVTEAHEAYEAKSKIGYVQTLPDIPSPPLDVLSKSNSSSQILLKWKPPSQ-P 637 (1025)
T ss_pred CccccccceehhcCCc-cceeEEEEeeeehhhhccccccccceEEEEecCCCCCCcchhhhccCcchheeEEecCCCC-C
Confidence 0011112367789999 9999999987632 122 1233445555555444333443 33345689999999874 4
Q ss_pred CCCcceEEEEEEecCCCc
Q psy7039 479 GSPITNYVVEKYESATGV 496 (516)
Q Consensus 479 ~~~i~~Y~v~~~~~~~~~ 496 (516)
++.+++|.|.++......
T Consensus 638 NG~lt~Ylv~wer~~~~~ 655 (1025)
T KOG4258|consen 638 NGNLTHYLVVWERQAEDG 655 (1025)
T ss_pred CCceeEEEEEEEeccCCc
Confidence 566999999998776544
|
|
| >PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.085 Score=40.31 Aligned_cols=67 Identities=21% Similarity=0.358 Sum_probs=42.0
Q ss_pred CCeEEEEEEE-eeecCCceEEEECCeecCCCCceEEEEcCC-----eEEEEEcCceecCCceEEEEEEEcCCCc
Q psy7039 370 GEEFTITVPF-SGRPKPTPIWTVNGDEVSPDGRIKFETSEN-----QTIYRNKSAKRATDSGSYTIQLVNTVGS 437 (516)
Q Consensus 370 g~~~~l~C~~-~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~-----~~~l~i~~~~~~~~~g~y~c~a~n~~G~ 437 (516)
|+.+.+.|.+ .+.|.+.|.|+.++..+............. .+.|.+..-.. ++...|+|.|.+..-.
T Consensus 14 ~~~~~~~C~s~~~~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~S~l~~~~~~~-~~~~~~~C~~~~~~~~ 86 (89)
T PF08205_consen 14 GEEVTLTCSSSGGYPPPQITWYLDGGPVVASNTTQSSSPDNGLFTVSSTLTLTPTRE-DHGKTLTCRASHPALS 86 (89)
T ss_dssp TEEEEEEEEEEEEBS-EEEEEEETTCEECEEEEEEEEETTTTTEEEEEEEEEETTGG-GTTEEEEEEEEETTCC
T ss_pred ceEEEEEEEeCCeECCeEEEEEECCCceeeeeeeeeeccCCCcceEEEEEEEEcChH-HCCeEEEEEEECCccC
Confidence 6799999977 567888999999987661111111111111 13566654444 6778899999988644
|
There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B .... |
| >smart00406 IGv Immunoglobulin V-Type | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.035 Score=41.31 Aligned_cols=57 Identities=19% Similarity=0.276 Sum_probs=37.6
Q ss_pred EEEEEEEeeecCC--ceEEEECCe---------------ec---CCCCceEEEEc--CCeEEEEEcCceecCCceEEEEE
Q psy7039 373 FTITVPFSGRPKP--TPIWTVNGD---------------EV---SPDGRIKFETS--ENQTIYRNKSAKRATDSGSYTIQ 430 (516)
Q Consensus 373 ~~l~C~~~g~p~~--~i~W~~~~~---------------~l---~~~~~~~~~~~--~~~~~l~i~~~~~~~~~g~y~c~ 430 (516)
+.|.|.+.....+ .+.|++... .. ....++.+... .+..+|.|.++.. .|+|.|.|.
T Consensus 2 v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~i~~~~~-~D~G~Y~C~ 80 (81)
T smart00406 2 VTLSCKASGFTFSSYYVSWVRQPPGKGLEWLGYIGSSGSTYYQQSYKGRVTISKDTSKNDVSLTISNLRV-EDTGTYYCA 80 (81)
T ss_pred EEEEEEEeccccceeEEEEEEeCCCCCeEEEEEEcCCCcEEECcccCCcEEEEecCcCCEEEEEEcCCCH-HHCEEEEEc
Confidence 5678877654443 678876431 00 11245554443 4567899999999 999999996
|
|
| >cd07699 IgC_L Immunoglobulin Constant domain | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.029 Score=44.14 Aligned_cols=33 Identities=12% Similarity=0.234 Sum_probs=25.0
Q ss_pred EecCCeEEEEEeeeeccccccCccccccccccCccceeecCcC-ceeeEEeeCCeeecc
Q psy7039 126 IKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEP-FLNHGWSINGQVCQI 183 (516)
Q Consensus 126 v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~i~W~~~~~~~~~ 183 (516)
...++.+.|.|.+.| ..| ...++|++++..+..
T Consensus 14 ~~~~~~~~L~C~~~g-------------------------fyP~~i~v~W~~~g~~~~~ 47 (100)
T cd07699 14 LEKSGKATLVCLIND-------------------------FYPGFATVQWKVDGATVSS 47 (100)
T ss_pred HccCCCcEEEEEEEe-------------------------EECCCCEEEEEECCEECcc
Confidence 445677999999992 244 578999999988753
|
IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains. |
| >cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4) | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.1 Score=41.49 Aligned_cols=80 Identities=10% Similarity=-0.064 Sum_probs=48.8
Q ss_pred cceEEecCCeEEEEEeeeeccccccCcccccccccc--CccceeecCcCceeeEEee---C-Ceeec-cCCceEEe--ec
Q psy7039 122 NDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRAN--STKGWVKLSEPFLNHGWSI---N-GQVCQ-IGGRADVQ--TT 192 (516)
Q Consensus 122 ~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~p~~~i~W~~---~-~~~~~-~~~~~~~~--~~ 192 (516)
....+..|..++|.|.++ |.... ..++|++. .|. .+.|-- . +.... ...++... ..
T Consensus 6 ~~~lv~p~~sv~LsC~~s-------------g~~~s~e~~~~wvRq-~pg-~lE~c~~~~~~g~~~~~~~~r~tcs~~~s 70 (115)
T cd05721 6 SPVLASSNGAASLVCEYT-------------YNGFSKEFRASLLKG-ADS-AVEVCAVTGNMSNQLQTSLDGFNCDGTLG 70 (115)
T ss_pred CCeEEcCCCCEEEEEEec-------------CCccccEEEEEEEEe-CCC-CcEEEEEEeCCCccccccCCCeEEeEeCC
Confidence 446678889999999987 22222 25566663 333 334421 1 11111 12344333 34
Q ss_pred CCeeEEEeccCCCCCCeeEEEEEE
Q psy7039 193 KSETVLDIPFCSRSDTGHYSLTLE 216 (516)
Q Consensus 193 ~~~~~l~i~~~~~~d~g~Y~c~~~ 216 (516)
.....|.|.+++.+|++.|.|..+
T Consensus 71 ~ntv~L~l~~L~a~DTa~Y~Ca~e 94 (115)
T cd05721 71 NEQVNFTLQNLRANQTDIYFCKIE 94 (115)
T ss_pred CCEEEEEEcCCCHHHCeEEEEEee
Confidence 456799999999999999999764
|
IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased |
| >cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.16 Score=39.26 Aligned_cols=66 Identities=11% Similarity=0.178 Sum_probs=38.9
Q ss_pred CCeEEEEEEEeeecCC--ceEEEECCeecCCCCc-eEEEEcCCe--EEEEEcCceecCCceEEEEEEEcCCC
Q psy7039 370 GEEFTITVPFSGRPKP--TPIWTVNGDEVSPDGR-IKFETSENQ--TIYRNKSAKRATDSGSYTIQLVNTVG 436 (516)
Q Consensus 370 g~~~~l~C~~~g~p~~--~i~W~~~~~~l~~~~~-~~~~~~~~~--~~l~i~~~~~~~~~g~y~c~a~n~~G 436 (516)
++.+.|.|.+.|..++ .+.|.+++..+..... ......++. .....-.+.. .+...|+|.+.....
T Consensus 14 ~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~~~d~ty~~~s~l~v~~-~~~~~ytC~V~H~~~ 84 (93)
T cd07698 14 DGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDVESGEILPNGDGTYQLWVTLEVPP-EDKARYSCRVEHSGL 84 (93)
T ss_pred CCcEEEEEEEEEEeCCCcEEEEEECCEECcccccccceEECCCCeEEEEEEEEECC-CCCCEEEEEEEeCCC
Confidence 6789999999996444 8899999863322211 111112111 1112223445 577899999987654
|
IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells. |
| >smart00407 IGc1 Immunoglobulin C-Type | Back alignment and domain information |
|---|
Probab=95.35 E-value=0.094 Score=38.65 Aligned_cols=52 Identities=17% Similarity=0.275 Sum_probs=29.5
Q ss_pred cCc-eeeEEeeCCeeeccCCce-EEee--cCC---eeEEEeccCCCCCCeeEEEEEEcC
Q psy7039 167 EPF-LNHGWSINGQVCQIGGRA-DVQT--TKS---ETVLDIPFCSRSDTGHYSLTLENN 218 (516)
Q Consensus 167 ~p~-~~i~W~~~~~~~~~~~~~-~~~~--~~~---~~~l~i~~~~~~d~g~Y~c~~~~~ 218 (516)
.|. ..++|++++..+..+... .... ++. .+.|.|.....++...|+|.+...
T Consensus 12 ~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~v~~~~~~~~~~~tC~V~H~ 70 (75)
T smart00407 12 YPPDITVTWLRNGQEVTSGVSTTDPLKNSDGTYFLSSYLTVSASTWESGDTYTCQVTHE 70 (75)
T ss_pred eCCCCEEEEEECCEECCCCEEECceEECCCCCEEEEEEEEEccccCCCCCEEEEEEEEc
Confidence 344 689999999875432111 1111 111 234555555556667899988654
|
|
| >cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain | Back alignment and domain information |
|---|
Probab=95.35 E-value=0.15 Score=39.45 Aligned_cols=31 Identities=16% Similarity=0.133 Sum_probs=23.9
Q ss_pred cCCeEEEEEeeeeccccccCccccccccccCccceeecCcC-ceeeEEeeCCeeecc
Q psy7039 128 AGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEP-FLNHGWSINGQVCQI 183 (516)
Q Consensus 128 ~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~i~W~~~~~~~~~ 183 (516)
.|+.+.|.|.+.| ..| ...++|.+++..+..
T Consensus 13 ~~~~~~L~C~~~g-------------------------FyP~~i~v~W~~~g~~~~~ 44 (94)
T cd05766 13 LSHPHLLVCHVWG-------------------------FYPPEITVKWFKNGQEETE 44 (94)
T ss_pred CCCCeEEEEEEee-------------------------ecCCCCEEEEEECCeecCC
Confidence 5788999999992 234 358899999988764
|
IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be |
| >smart00407 IGc1 Immunoglobulin C-Type | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.14 Score=37.76 Aligned_cols=62 Identities=21% Similarity=0.263 Sum_probs=38.0
Q ss_pred EEEEEEEeee-cC-CceEEEECCeecCCCCc-eEEEEcCC-----eEEEEEcCceecCCceEEEEEEEcCC
Q psy7039 373 FTITVPFSGR-PK-PTPIWTVNGDEVSPDGR-IKFETSEN-----QTIYRNKSAKRATDSGSYTIQLVNTV 435 (516)
Q Consensus 373 ~~l~C~~~g~-p~-~~i~W~~~~~~l~~~~~-~~~~~~~~-----~~~l~i~~~~~~~~~g~y~c~a~n~~ 435 (516)
++|.|.+.|. |. ..+.|+++|..+..+.. .......+ .+.|.|..... ++...|+|.+....
T Consensus 2 ~~L~C~a~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~v~~~~~-~~~~~~tC~V~H~~ 71 (75)
T smart00407 2 ATLVCLVSGFYPPDITVTWLRNGQEVTSGVSTTDPLKNSDGTYFLSSYLTVSASTW-ESGDTYTCQVTHEG 71 (75)
T ss_pred eEEEEEEEeEeCCCCEEEEEECCEECCCCEEECceEECCCCCEEEEEEEEEccccC-CCCCEEEEEEEEcC
Confidence 5799999886 44 38999999986432211 11111111 13456655555 67789999987654
|
|
| >PF09294 Interfer-bind: Interferon-alpha/beta receptor, fibronectin type III; InterPro: IPR015373 Members of this family adopt a secondary structure consisting of seven beta-strands arranged in an immunoglobulin-like beta-sandwich, in a Greek-key topology | Back alignment and domain information |
|---|
Probab=95.11 E-value=0.19 Score=39.80 Aligned_cols=73 Identities=23% Similarity=0.349 Sum_probs=49.6
Q ss_pred CCCcceEEEeeeCCeeEEEecCCC-----CCCCCc------eeceEEEEEeCCCCeEEeEEeecCCcEEEeCCCcCCCeE
Q psy7039 15 GKPTDLEATDWDKDHVDLQWTPPI-----SDGGSP------ITGYVVEMKDKTGNWEKAVVVPAGETSCTVPGLIEGETY 83 (516)
Q Consensus 15 ~~p~~l~~~~~~~~~v~l~W~~p~-----~~~~~~------i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y 83 (516)
|||. +.+ ...++.+.|.+.+|. ...+.. -..|.|.+.+.+.. ............+.|.+|.++..|
T Consensus 4 gPP~-v~v-~~~~~~l~V~i~~P~~~~~~~~~~~~l~~~~~~~~Y~v~~~~~~~~-~~~~~~~~~~~~~~l~~L~p~t~Y 80 (106)
T PF09294_consen 4 GPPS-VNV-SSCGGSLHVTIKPPMTPLRAGGKNSSLRDIYPSLSYNVSYWKNGSN-EKKKEIETKNSSVTLSDLKPGTNY 80 (106)
T ss_dssp -SSE-EEE-EEETTEEEEEEEESEEEEECSSSEEEHHHHHGG-EEEEEEEETTTS-CEEEEEESSSEEEEEES--TTSEE
T ss_pred cCCE-EEE-EECCCEEEEEEECCCcccccCCCCCcHHHhCCCeEEEEEEEeCCCc-cceEEEeecCCEEEEeCCCCCCCE
Confidence 5666 777 488999999999984 111111 13599998887775 222334446777899999999999
Q ss_pred EEEEEEe
Q psy7039 84 QFQVRAV 90 (516)
Q Consensus 84 ~~~~~a~ 90 (516)
-++++|.
T Consensus 81 Cv~V~~~ 87 (106)
T PF09294_consen 81 CVSVQAF 87 (106)
T ss_dssp EEEEEEE
T ss_pred EEEEEEE
Confidence 9999993
|
They are required for binding to interferon-alpha []. ; PDB: 1A21_A 3LQM_B 3ELA_T 1AHW_C 2A2Q_T 1TFH_B 1FAK_T 1WSS_T 1W2K_T 2FIR_T .... |
| >PHA02982 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.05 E-value=0.064 Score=46.69 Aligned_cols=76 Identities=8% Similarity=0.131 Sum_probs=53.0
Q ss_pred cceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeecc------------------
Q psy7039 122 NDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQI------------------ 183 (516)
Q Consensus 122 ~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~------------------ 183 (516)
.++....++++.|.|.+.+ +..-.+..|+.++.....
T Consensus 32 ~dv~a~vd~~V~L~C~~~~-------------------------~~~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~ 86 (251)
T PHA02982 32 ADVNATVDQEVKLQCLFKD-------------------------ADEISRAMWKGDAGFMLAQEANGGTGINAFNYVPGP 86 (251)
T ss_pred hhhhccCCCcEEEEecCCC-------------------------cchhhhheeeCCCCeEEEeeecCcceeccccccCCc
Confidence 3456677999999999773 444557778875432211
Q ss_pred -CCceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCce
Q psy7039 184 -GGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTA 222 (516)
Q Consensus 184 -~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~ 222 (516)
...+.+.-.+..++|+|.++..+..|.|+|.+....+..
T Consensus 87 ~kd~y~~sv~g~~STLTIkk~~i~N~GCYtc~~ks~~~k~ 126 (251)
T PHA02982 87 YKDKYALSVSGNSSTFTMKKPDPQNLGCFTCEAKDAEGKE 126 (251)
T ss_pred cceeEEEEEeccceeEEeccCCcccCCceEEEEecCCCch
Confidence 012333446778999999999999999999998755443
|
|
| >cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain | Back alignment and domain information |
|---|
Probab=95.03 E-value=0.24 Score=38.31 Aligned_cols=68 Identities=15% Similarity=0.136 Sum_probs=39.0
Q ss_pred EcCCeEEEEEEEeeecCC--ceEEEECCeecCCCC-ceEEEEcCC--eEEEEEcCceecCCceEEEEEEEcCCC
Q psy7039 368 LAGEEFTITVPFSGRPKP--TPIWTVNGDEVSPDG-RIKFETSEN--QTIYRNKSAKRATDSGSYTIQLVNTVG 436 (516)
Q Consensus 368 ~~g~~~~l~C~~~g~p~~--~i~W~~~~~~l~~~~-~~~~~~~~~--~~~l~i~~~~~~~~~g~y~c~a~n~~G 436 (516)
..|...+|.|.+.|.-++ .+.|.++|..+..+. ......+++ ......-.+.. .....|.|.+.....
T Consensus 12 ~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgTy~~~s~L~~~~-~~~~~ysC~V~H~~l 84 (94)
T cd05766 12 SLSHPHLLVCHVWGFYPPEITVKWFKNGQEETEGVVSTELIPNGDWTYQILVMLETTP-SRGDTYTCVVEHSSL 84 (94)
T ss_pred cCCCCeEEEEEEeeecCCCCEEEEEECCeecCCCceecceEECCCCcEEEEEEEEEcC-CCCCEEEEEEEeCCC
Confidence 357889999999986544 689999998765431 111111221 11111112334 455678888876543
|
IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be |
| >PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds | Back alignment and domain information |
|---|
Probab=94.86 E-value=0.29 Score=36.83 Aligned_cols=64 Identities=20% Similarity=0.242 Sum_probs=41.6
Q ss_pred CCeEEEEEEEeeecCC--ceEEEECCeecCCCCceEEEE--cCCe----EEEEEcCceecCCceEEEEEEEcCCCc
Q psy7039 370 GEEFTITVPFSGRPKP--TPIWTVNGDEVSPDGRIKFET--SENQ----TIYRNKSAKRATDSGSYTIQLVNTVGS 437 (516)
Q Consensus 370 g~~~~l~C~~~g~p~~--~i~W~~~~~~l~~~~~~~~~~--~~~~----~~l~i~~~~~~~~~g~y~c~a~n~~G~ 437 (516)
+..+.|.|.+.+..+. .|.|.+++..+.......... .++. +.|.+. . .....|.|.+......
T Consensus 8 ~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~---~-~~~~~ysC~V~H~~l~ 79 (83)
T PF07654_consen 8 GGSVTLTCLVSGFYPKDITVTWLKNGKEVTEGVETTPPPPNSDGTYSVTSSLTVT---W-NSGDEYSCRVTHESLP 79 (83)
T ss_dssp TSEEEEEEEEEEEBSSTEEEEEEETTEEETTTEEEEEEEEETTSEEEEEEEEEEE---T-TTTGGEEEEEEETTSS
T ss_pred CCCEEEEEEEEEEECCCcEEEEEeccceeeeeeeecccccccccceeeeEEEEec---C-CCCCEEEEEEEECCCC
Confidence 7889999999886544 799999998775433222111 1221 234443 4 6667899999876544
|
There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A .... |
| >cd07699 IgC_L Immunoglobulin Constant domain | Back alignment and domain information |
|---|
Probab=94.68 E-value=0.22 Score=39.02 Aligned_cols=68 Identities=13% Similarity=0.115 Sum_probs=40.4
Q ss_pred EcCCeEEEEEEEeeecC--CceEEEECCeecCCCCce-E-EEE-cCCe---EEEEEcCceecCCceEEEEEEEcCCC
Q psy7039 368 LAGEEFTITVPFSGRPK--PTPIWTVNGDEVSPDGRI-K-FET-SENQ---TIYRNKSAKRATDSGSYTIQLVNTVG 436 (516)
Q Consensus 368 ~~g~~~~l~C~~~g~p~--~~i~W~~~~~~l~~~~~~-~-~~~-~~~~---~~l~i~~~~~~~~~g~y~c~a~n~~G 436 (516)
..+..++|.|.+.|..+ ..+.|+++|..+..+... . ... .+.. +.|.+..-.. ++...|.|.+.....
T Consensus 15 ~~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~w-~~~~~~sC~V~H~~l 90 (100)
T cd07699 15 EKSGKATLVCLINDFYPGFATVQWKVDGATVSSGVQTSTTEQQSDNTYSLSSYLTLTKSDW-NKHKVYTCEVTHEGL 90 (100)
T ss_pred ccCCCcEEEEEEEeEECCCCEEEEEECCEECcccEeccccEECCCCCEEEEEEEEEcHHHh-CCCCeEEEEEEecCC
Confidence 35677899999988543 378999999887422110 0 111 1111 2444544433 346789999886643
|
IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains. |
| >cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins | Back alignment and domain information |
|---|
Probab=94.67 E-value=0.26 Score=38.20 Aligned_cols=54 Identities=4% Similarity=0.009 Sum_probs=30.7
Q ss_pred CcCceeeEEeeCCeeeccCCceEEeecCC---eeEEEeccCCCCCCeeEEEEEEcCCC
Q psy7039 166 SEPFLNHGWSINGQVCQIGGRADVQTTKS---ETVLDIPFCSRSDTGHYSLTLENNLG 220 (516)
Q Consensus 166 ~~p~~~i~W~~~~~~~~~~~~~~~~~~~~---~~~l~i~~~~~~d~g~Y~c~~~~~~g 220 (516)
|.|.++|+|+++..... ........++. .+.|.+.....+|.-.|+|.+.+..-
T Consensus 27 gkP~a~ItW~~~~~~~~-~~~~~~~~~g~~tv~S~l~~~p~~~d~G~~~tC~v~h~~l 83 (95)
T cd05719 27 GKPPATISWETTLGGEA-ETQSKENPNGTVTVTSEYRLVPSREANGKELTCVVSHPTL 83 (95)
T ss_pred CcCCCEEEEEeCCCCcc-eeEeecCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCccc
Confidence 89999999999721110 00011111111 24666655555666679999987543
|
Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus |
| >cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin | Back alignment and domain information |
|---|
Probab=94.31 E-value=0.32 Score=37.53 Aligned_cols=65 Identities=14% Similarity=0.190 Sum_probs=37.9
Q ss_pred cCCeEEEEEEEeeecCC--ceEEEECCeecCCCCc-eEEEEcCCeE--EEEEcCceecCCceEEEEEEEcCC
Q psy7039 369 AGEEFTITVPFSGRPKP--TPIWTVNGDEVSPDGR-IKFETSENQT--IYRNKSAKRATDSGSYTIQLVNTV 435 (516)
Q Consensus 369 ~g~~~~l~C~~~g~p~~--~i~W~~~~~~l~~~~~-~~~~~~~~~~--~l~i~~~~~~~~~g~y~c~a~n~~ 435 (516)
.|....|.|.+.|--++ .+.|.++|..+. +.. .....+++.+ ...--.+.+ .+.-.|.|.+.-..
T Consensus 14 ~g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~-~~~~~~~~p~~d~tyq~~s~l~~~~-~~~~~ysC~V~H~~ 83 (93)
T cd05770 14 NGKPNVLNCYVTGFHPPDIEIRLLKNGVKIP-KVEQSDLSFSKDWTFYLLKSTEFTP-TKGDEYACRVRHNS 83 (93)
T ss_pred CCCceEEEEEEEEEeCCCCEEEEEECCEECC-CcEECcEEECCCCCEEEEEEEEECC-CCCCeEEEEEEECC
Confidence 45667899999996544 689999998875 221 1111222211 111112345 56667999887643
|
IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted. |
| >cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain | Back alignment and domain information |
|---|
Probab=94.22 E-value=0.31 Score=37.68 Aligned_cols=30 Identities=23% Similarity=0.168 Sum_probs=22.4
Q ss_pred CCeEEEEEeeeeccccccCccccccccccCccceeecCcC-ceeeEEeeCCeeecc
Q psy7039 129 GQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEP-FLNHGWSINGQVCQI 183 (516)
Q Consensus 129 g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~i~W~~~~~~~~~ 183 (516)
++..+|.|.+.| ..| ...++|.++|..+..
T Consensus 15 ~~~~tL~C~a~g-------------------------FyP~~I~v~W~~~g~~~~~ 45 (94)
T cd05767 15 GEPNTLICFVDN-------------------------FFPPVLNVTWLKNGVPVTD 45 (94)
T ss_pred CCCeEEEEEEEE-------------------------EECCcCEEEEEECCeEccC
Confidence 556799999992 233 468899999988754
|
IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom |
| >cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin | Back alignment and domain information |
|---|
Probab=94.14 E-value=0.091 Score=41.42 Aligned_cols=31 Identities=16% Similarity=0.102 Sum_probs=23.7
Q ss_pred ecCCeEEEEEeeeeccccccCccccccccccCccceeecCc-C-ceeeEEeeCCeeecc
Q psy7039 127 KAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSE-P-FLNHGWSINGQVCQI 183 (516)
Q Consensus 127 ~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p-~~~i~W~~~~~~~~~ 183 (516)
..|+.++|.|.+. |. | ...++|.+++..+..
T Consensus 14 ~~~~~~tL~C~a~--------------------------gFyP~~i~v~W~k~g~~~~~ 46 (102)
T cd05768 14 SLQETATLTCLVK--------------------------GFSPSDIFVKWLQNGQPLSK 46 (102)
T ss_pred CcCCceEEEEEEe--------------------------eEeCCCCEEEEEECCEECCc
Confidence 3467899999999 43 3 357899999988754
|
IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. |
| >PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds | Back alignment and domain information |
|---|
Probab=94.11 E-value=0.45 Score=35.74 Aligned_cols=65 Identities=15% Similarity=0.164 Sum_probs=39.7
Q ss_pred cCCeEEEEEeeeeccccccCccccccccccCccceeecCcC-ceeeEEeeCCeeeccCCceEEe---ecCCe---eEEEe
Q psy7039 128 AGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEP-FLNHGWSINGQVCQIGGRADVQ---TTKSE---TVLDI 200 (516)
Q Consensus 128 ~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~i~W~~~~~~~~~~~~~~~~---~~~~~---~~l~i 200 (516)
.+..+.|.|.+.| ..| ...|.|.+++..+......... .++.. +.|.+
T Consensus 7 ~~~~~~L~C~v~~-------------------------f~P~~i~v~W~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v 61 (83)
T PF07654_consen 7 LGGSVTLTCLVSG-------------------------FYPKDITVTWLKNGKEVTEGVETTPPPPNSDGTYSVTSSLTV 61 (83)
T ss_dssp STSEEEEEEEEEE-------------------------EBSSTEEEEEEETTEEETTTEEEEEEEEETTSEEEEEEEEEE
T ss_pred CCCCEEEEEEEEE-------------------------EECCCcEEEEEeccceeeeeeeecccccccccceeeeEEEEe
Confidence 3789999999992 233 4689999999988654322111 12211 24444
Q ss_pred ccCCCCCCeeEEEEEEcCCC
Q psy7039 201 PFCSRSDTGHYSLTLENNLG 220 (516)
Q Consensus 201 ~~~~~~d~g~Y~c~~~~~~g 220 (516)
. ..+...|+|.+.....
T Consensus 62 ~---~~~~~~ysC~V~H~~l 78 (83)
T PF07654_consen 62 T---WNSGDEYSCRVTHESL 78 (83)
T ss_dssp E---TTTTGGEEEEEEETTS
T ss_pred c---CCCCCEEEEEEEECCC
Confidence 4 4445578888876543
|
There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A .... |
| >cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins | Back alignment and domain information |
|---|
Probab=94.10 E-value=0.22 Score=38.63 Aligned_cols=71 Identities=7% Similarity=0.059 Sum_probs=44.2
Q ss_pred cceEEecCCeEEE-EEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEeecC---CeeE
Q psy7039 122 NDVKIKAGQSFSF-DVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTTK---SETV 197 (516)
Q Consensus 122 ~~~~v~~g~~~~l-~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~---~~~~ 197 (516)
..+.+.+|+.+.+ .|...+ |.|.++|+|+.+..... ........++ ..+.
T Consensus 9 ~~~~~~~g~~~~vA~C~sa~-------------------------gkPaa~IsW~~~~~G~~-~~~~~~~~ngT~TV~S~ 62 (97)
T cd07704 9 PSLLIDGGNGTTLAACCAAE-------------------------GRPAADVTWETNVYGTS-ESHSQEHPNGTTTVTSE 62 (97)
T ss_pred CeeEeecCcceeEEEEEccC-------------------------CccCCEeEEeCCCCCcc-ceeeecCCCCCEEEEEE
Confidence 3466788999999 998875 89999999998633221 1111111111 1235
Q ss_pred EEeccCCCCCCeeEEEEEEcC
Q psy7039 198 LDIPFCSRSDTGHYSLTLENN 218 (516)
Q Consensus 198 l~i~~~~~~d~g~Y~c~~~~~ 218 (516)
|.+.....+|.-.++|.+...
T Consensus 63 ~~l~p~r~d~G~~vtC~V~H~ 83 (97)
T cd07704 63 YIWVPSRHANGHPLTCVVSHP 83 (97)
T ss_pred EEEEeCHHHCCcEEEEEEeCc
Confidence 555555555666799998764
|
Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect |
| >cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins | Back alignment and domain information |
|---|
Probab=94.07 E-value=0.26 Score=38.14 Aligned_cols=54 Identities=7% Similarity=0.033 Sum_probs=31.1
Q ss_pred CcCceeeEEeeCCeeeccCCceEEeecCC---eeEEEeccCCCCCCeeEEEEEEcCCC
Q psy7039 166 SEPFLNHGWSINGQVCQIGGRADVQTTKS---ETVLDIPFCSRSDTGHYSLTLENNLG 220 (516)
Q Consensus 166 ~~p~~~i~W~~~~~~~~~~~~~~~~~~~~---~~~l~i~~~~~~d~g~Y~c~~~~~~g 220 (516)
|.|.++|+|+++..... ........++. .+.|.+.....+|...|+|.+.+..-
T Consensus 27 gkPaa~IsW~~~~~g~~-~~~~~~~~~gt~tv~S~l~~~P~~~d~Gk~ltC~v~h~al 83 (95)
T cd07703 27 GRPPARISWSSTLGGNA-NTTSKENGDGTVTVTSEYSLVPTPEANGKEVTCKVEHETL 83 (95)
T ss_pred CCCCcEEEEEcCCCCCe-eEEEEeCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCccc
Confidence 89999999998722111 00111111221 24566655555666679999988543
|
Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. |
| >KOG4258|consensus | Back alignment and domain information |
|---|
Probab=94.03 E-value=0.3 Score=51.69 Aligned_cols=134 Identities=17% Similarity=0.191 Sum_probs=79.1
Q ss_pred cceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeC--------------CC-CeEEeEEeec-------CCcEEEeC
Q psy7039 18 TDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDK--------------TG-NWEKAVVVPA-------GETSCTVP 75 (516)
Q Consensus 18 ~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~--------------~~-~~~~~~~~~~-------~~~~~~i~ 75 (516)
..+..+..+.++|.|+|..-...+--...+|.+.|++. +. .|......+. ...-+.+.
T Consensus 492 l~~~~~~~~~dsi~lrW~~~~~~d~r~llg~~~~yKEaP~qNvT~~dg~~aCg~~~W~~~~v~~~~~~p~~~~~~~~~l~ 571 (1025)
T KOG4258|consen 492 LQFSSTVTSADSILLRWERYQPPDMRDLLGFLLHYKEAPFQNVTEEDGRDACGSNSWNVVDVDPPDLIPNDGTHPGFLLD 571 (1025)
T ss_pred eeeeeEEeecceeEEEecccCCcchhhhheeeEeeccCCccccceecCccccccCcceEEeccCCcCCCccccccceehh
Confidence 34455556788999999873222223367999998753 11 3544433222 23357889
Q ss_pred CCcCCCeEEEEEEEecCCCC-CCCCCCCcceEeccCCCCCccccCcccceEEecCCeEEEEEeeeeccccccCccccccc
Q psy7039 76 GLIEGETYQFQVRAVNAAGP-GEASKPTAPIVAKPKNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGV 154 (516)
Q Consensus 76 ~l~~~~~y~~~~~a~n~~g~-~~~s~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~ 154 (516)
+|+|++.|-|.|++...... ......+....+++.+..| +++..+.....++-.|...|. +|.+|.|.
T Consensus 572 ~LkP~TqYAvfVkT~t~t~~~~~~~A~S~I~YvqT~~~~P----spPl~~ls~snsSsqi~l~W~-------pP~~pNG~ 640 (1025)
T KOG4258|consen 572 GLKPWTQYAVFVKTLTVTEAHEAYEAKSKIGYVQTLPDIP----SPPLDVLSKSNSSSQILLKWK-------PPSQPNGN 640 (1025)
T ss_pred cCCccceeEEEEeeeehhhhccccccccceEEEEecCCCC----CCcchhhhccCcchheeEEec-------CCCCCCCc
Confidence 99999999999998732211 1112334445555554555 334444444555556666676 67777776
Q ss_pred cccCccce
Q psy7039 155 RANSTKGW 162 (516)
Q Consensus 155 ~~~~~~~~ 162 (516)
-.++.+-|
T Consensus 641 lt~Ylv~w 648 (1025)
T KOG4258|consen 641 LTHYLVVW 648 (1025)
T ss_pred eeEEEEEE
Confidence 66665444
|
|
| >cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin | Back alignment and domain information |
|---|
Probab=94.02 E-value=0.5 Score=36.42 Aligned_cols=29 Identities=14% Similarity=0.089 Sum_probs=22.7
Q ss_pred cCCeEEEEEeeeeccccccCccccccccccCccceeecC-c-CceeeEEeeCCeeec
Q psy7039 128 AGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLS-E-PFLNHGWSINGQVCQ 182 (516)
Q Consensus 128 ~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-p~~~i~W~~~~~~~~ 182 (516)
.|....|.|.+. | . +...++|.+|+..+.
T Consensus 14 ~g~~~~L~C~a~--------------------------gFyP~~i~v~W~~dg~~~~ 44 (93)
T cd05770 14 NGKPNVLNCYVT--------------------------GFHPPDIEIRLLKNGVKIP 44 (93)
T ss_pred CCCceEEEEEEE--------------------------EEeCCCCEEEEEECCEECC
Confidence 466678999999 4 2 356889999999876
|
IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted. |
| >cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin | Back alignment and domain information |
|---|
Probab=93.96 E-value=0.45 Score=36.99 Aligned_cols=28 Identities=14% Similarity=0.251 Sum_probs=22.4
Q ss_pred EEcCCeEEEEEEEeee-cCC--ceEEEECCe
Q psy7039 367 VLAGEEFTITVPFSGR-PKP--TPIWTVNGD 394 (516)
Q Consensus 367 v~~g~~~~l~C~~~g~-p~~--~i~W~~~~~ 394 (516)
+..|+.++|.|.+.|. .++ .+.|.+++.
T Consensus 11 l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~ 41 (96)
T cd07696 11 LLLTKSVKLTCLVTNLTSPEGVNVTWTRGSG 41 (96)
T ss_pred hccCCCeEEEEEEeCCCCCCCcEEEEEECCe
Confidence 5568889999999988 333 789999874
|
IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. |
| >cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain | Back alignment and domain information |
|---|
Probab=93.93 E-value=0.18 Score=39.12 Aligned_cols=30 Identities=7% Similarity=-0.004 Sum_probs=23.0
Q ss_pred cCCeEEEEEeeeeccccccCccccccccccCccceeecC-cC-ceeeEEeeCCeeecc
Q psy7039 128 AGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLS-EP-FLNHGWSINGQVCQI 183 (516)
Q Consensus 128 ~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~p-~~~i~W~~~~~~~~~ 183 (516)
.+..+.|.|.+. + .| ...++|.+++..+..
T Consensus 15 ~~~~~tL~C~a~--------------------------gFyP~~I~v~W~kng~~~~~ 46 (96)
T cd07697 15 KQGQGIYLCLLE--------------------------NFFPDVIQVHWREGNSPSIL 46 (96)
T ss_pred cCCCEEEEEEEE--------------------------EEeCCCeEEEEEECCEECcC
Confidence 356789999999 4 33 568899999988654
|
IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. |
| >cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE) | Back alignment and domain information |
|---|
Probab=93.92 E-value=0.56 Score=36.27 Aligned_cols=68 Identities=12% Similarity=0.162 Sum_probs=39.9
Q ss_pred cCCeEEEEEEEeeecCC--ceEEEECCeecCCCC-ce-EEEEcCCe----EEEEEcCceecCCceEEEEEEEcCCCc
Q psy7039 369 AGEEFTITVPFSGRPKP--TPIWTVNGDEVSPDG-RI-KFETSENQ----TIYRNKSAKRATDSGSYTIQLVNTVGS 437 (516)
Q Consensus 369 ~g~~~~l~C~~~g~p~~--~i~W~~~~~~l~~~~-~~-~~~~~~~~----~~l~i~~~~~~~~~g~y~c~a~n~~G~ 437 (516)
....+.|.|.+.|.-+. .|.|.++|..+..+. .. .....++. +.|.|..-.. .+...|.|.+......
T Consensus 13 ~~~~~~L~C~a~gFyP~~I~vtW~~dg~~~~~~~~~s~~~~~~~~Ty~~~S~L~v~~~~w-~~~~~ytC~V~H~~~~ 88 (94)
T cd05847 13 TSETIQLLCLISGYTPGTIEVEWLVDGQVATLVAASTAPQKEEGSTFSTTSELNVTQEDW-KSGKTYTCKVTHQGTT 88 (94)
T ss_pred CCCCEEEEEEEEeEECCCCEEEEEECCEECcCceeecccEECCCCcEEEEEEEEEchHHh-cCCCeEEEEEEECCee
Confidence 34568999999985443 789999998763221 11 11111111 2344443333 3567899999876543
|
IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG. |
| >cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain | Back alignment and domain information |
|---|
Probab=93.86 E-value=0.17 Score=40.75 Aligned_cols=33 Identities=15% Similarity=0.253 Sum_probs=24.7
Q ss_pred ecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCc-eeeEEeeCCeeeccC
Q psy7039 127 KAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPF-LNHGWSINGQVCQIG 184 (516)
Q Consensus 127 ~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~i~W~~~~~~~~~~ 184 (516)
.+++.+.|.|.+.| ..|. ..++|++|+..+..+
T Consensus 16 ~~~~~~tL~Cla~g-------------------------FyP~~I~V~W~kng~~l~~g 49 (115)
T cd05769 16 RNKRKATLVCLATG-------------------------FYPDHVSLSWKVNGKEVTDG 49 (115)
T ss_pred ccCCCcEEEEEEEe-------------------------EeCCCcEEEEEECCEECCCC
Confidence 35677899999992 2444 689999999887643
|
IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs. |
| >cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain | Back alignment and domain information |
|---|
Probab=93.81 E-value=0.71 Score=35.68 Aligned_cols=63 Identities=14% Similarity=0.151 Sum_probs=37.4
Q ss_pred cCCeEEEEEEEeeecCC--ceEEEECCeecCCCCce-EEEEcCCe-----EEEEEcCceecCCceEEEEEEEcCC
Q psy7039 369 AGEEFTITVPFSGRPKP--TPIWTVNGDEVSPDGRI-KFETSENQ-----TIYRNKSAKRATDSGSYTIQLVNTV 435 (516)
Q Consensus 369 ~g~~~~l~C~~~g~p~~--~i~W~~~~~~l~~~~~~-~~~~~~~~-----~~l~i~~~~~~~~~g~y~c~a~n~~ 435 (516)
.+...+|.|.+.|--+. .+.|.++|..+..+... ....+++. ..|.+ .+ .+...|+|.+.-..
T Consensus 14 ~~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~~~~~~~~~~~~Dgty~~~s~L~v---~~-~~~~~ytC~V~H~~ 84 (94)
T cd05767 14 LGEPNTLICFVDNFFPPVLNVTWLKNGVPVTDGVSETRYYPRQDLSFQKFSYLNF---TP-EEGDIYSCIVEHWG 84 (94)
T ss_pred CCCCeEEEEEEEEEECCcCEEEEEECCeEccCceEEeeeEeCCCCcEEEEEEEEE---EC-CCCCeEEEEEEeCC
Confidence 34557999999995443 78999999876542111 11111111 22333 34 55568999887653
|
IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom |
| >PF09067 EpoR_lig-bind: Erythropoietin receptor, ligand binding; InterPro: IPR015152 Members of this entry include the growth hormone and erythropoietin receptors | Back alignment and domain information |
|---|
Probab=93.74 E-value=0.28 Score=38.60 Aligned_cols=82 Identities=23% Similarity=0.350 Sum_probs=60.2
Q ss_pred CCCCCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCCCeEEeEEee---cCC-----cEEEeCCCcCCCeE
Q psy7039 12 DEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVVVP---AGE-----TSCTVPGLIEGETY 83 (516)
Q Consensus 12 ~~p~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~---~~~-----~~~~i~~l~~~~~y 83 (516)
.+|+.|.++.+.+-+-..++..|++.. +++.+ ..|.+.|...+..|..+.... .+. +.|.-.+......|
T Consensus 6 ~~p~~P~~~~C~S~~~etftC~W~~g~-~~~l~-~~y~L~Y~~~~~~~~eCp~~~~~~~ns~~~~~C~F~~~~t~lf~~y 83 (104)
T PF09067_consen 6 LPPEKPENLKCFSREMETFTCFWEPGS-EGNLP-TNYTLFYKKEGEEWKECPDYSTSGPNSTVRHICYFPKSDTSLFVPY 83 (104)
T ss_dssp HHCCCCEEEEEEBSSSS-EEEEEEEES-SSTST-CEEEEEEEETTSEEEEESESSTTETTEEEEEEEEE-CCGCSSSSEE
T ss_pred cCCCCCccCccCCCCCCcEEEEeeCCC-CCCCC-CcEEEEEEeCCCCCccCCCeEecCCCCceeEEEEcCCCCeEEEEEE
Confidence 468999999999888899999999963 34332 449999998777777775433 122 44444578899999
Q ss_pred EEEEEEecCCCC
Q psy7039 84 QFQVRAVNAAGP 95 (516)
Q Consensus 84 ~~~~~a~n~~g~ 95 (516)
.++|.|.|..|.
T Consensus 84 ~i~V~a~~~~~~ 95 (104)
T PF09067_consen 84 CIQVEATNALGS 95 (104)
T ss_dssp EEEEEEEETTEE
T ss_pred EEEEEeccCCCc
Confidence 999999887663
|
The latter interacts with erythropoietin (EPO), with subsequent initiation of the downstream chain of events associated with binding of EPO to the receptor, including EPO-induced erythroblast proliferation and differentiation through induction of the JAK2/STAT5 signalling cascade. The domain adopts a secondary structure composed of a short amino-terminal helix, followed by two beta-sandwich regions []. ; PDB: 3NCB_B 3NCF_B 3NCE_B 3N0P_B 3NCC_B 1BP3_B 3N06_B 3MZG_B 3D48_R 1F6F_C .... |
| >cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins | Back alignment and domain information |
|---|
Probab=93.73 E-value=0.61 Score=36.15 Aligned_cols=64 Identities=14% Similarity=0.203 Sum_probs=38.8
Q ss_pred CeEEEEEEE-eeecCCceEEEECCeecCCCCceEEEEcCC-----eEEEEEcCceecCCceEEEEEEEcCCCce
Q psy7039 371 EEFTITVPF-SGRPKPTPIWTVNGDEVSPDGRIKFETSEN-----QTIYRNKSAKRATDSGSYTIQLVNTVGSD 438 (516)
Q Consensus 371 ~~~~l~C~~-~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~-----~~~l~i~~~~~~~~~g~y~c~a~n~~G~~ 438 (516)
....+.|.+ .|.|.+.|.|+++... ..........+ .+.|.+.-... ++.-.|+|.+.+..-..
T Consensus 16 ~~~va~C~s~~gkP~a~ItW~~~~~~---~~~~~~~~~~~g~~tv~S~l~~~p~~~-d~G~~~tC~v~h~~l~~ 85 (95)
T cd05719 16 PVTVATCVSANGKPPATISWETTLGG---EAETQSKENPNGTVTVTSEYRLVPSRE-ANGKELTCVVSHPTLQE 85 (95)
T ss_pred ccEEEEEECCCCcCCCEEEEEeCCCC---cceeEeecCCCCCEEEEEEEEEecCHH-HCCCEEEEEEeCcccCC
Confidence 456778998 5889999999987211 11111111111 13566655444 66668999999987543
|
Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus |
| >PHA02633 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=93.62 E-value=0.18 Score=34.80 Aligned_cols=35 Identities=17% Similarity=0.096 Sum_probs=26.9
Q ss_pred CeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEEe
Q psy7039 194 SETVLDIPFCSRSDTGHYSLTLENNLGTATASAHV 228 (516)
Q Consensus 194 ~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~ 228 (516)
....|.|-++..+|+|.|.|..+|..-..+.++.+
T Consensus 16 ~~~nLwilpa~~sDSGiYiC~~rn~t~c~~~si~l 50 (63)
T PHA02633 16 NCNNMLILNPTQSDSGIYMCITKNETYSDMMKFDL 50 (63)
T ss_pred ccccEEEeccccccCcEEEEEEcCCCeeEEEEEEE
Confidence 34479999999999999999999866555544433
|
|
| >cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin | Back alignment and domain information |
|---|
Probab=93.48 E-value=0.39 Score=37.81 Aligned_cols=67 Identities=15% Similarity=0.130 Sum_probs=38.8
Q ss_pred EcCCeEEEEEEEeeecCC--ceEEEECCeecCCCCceE--EEEc----CC---eEEEEEcCceecCCceEEEEEEEcCC
Q psy7039 368 LAGEEFTITVPFSGRPKP--TPIWTVNGDEVSPDGRIK--FETS----EN---QTIYRNKSAKRATDSGSYTIQLVNTV 435 (516)
Q Consensus 368 ~~g~~~~l~C~~~g~p~~--~i~W~~~~~~l~~~~~~~--~~~~----~~---~~~l~i~~~~~~~~~g~y~c~a~n~~ 435 (516)
..+..++|.|.+.|..+. .+.|.++|..+....... .... +. .+.|.|..-.. .+...|.|.+....
T Consensus 14 ~~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~~~~~~~~~~~~~~~~dgTy~~~s~L~v~~~~w-~~~~~ytC~V~H~~ 91 (102)
T cd05768 14 SLQETATLTCLVKGFSPSDIFVKWLQNGQPLSKQKYVTTAPMQEPGGNESYFLYSKLTVSAEDW-NAGDVFTCVVGHEA 91 (102)
T ss_pred CcCCceEEEEEEeeEeCCCCEEEEEECCEECCcccccccCcccccCCCCeEEEEEEEEEcHHHh-cCCCcEEEEeEeCC
Confidence 346789999999986554 679999998764322111 1111 11 12344433222 34557999887654
|
IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. |
| >cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE) | Back alignment and domain information |
|---|
Probab=93.41 E-value=0.36 Score=37.32 Aligned_cols=68 Identities=10% Similarity=0.183 Sum_probs=38.1
Q ss_pred cCCeEEEEEeeeeccccccCccccccccccCccceeecCcC-ceeeEEeeCCeeeccCC---ceEEeecCC---eeEEEe
Q psy7039 128 AGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEP-FLNHGWSINGQVCQIGG---RADVQTTKS---ETVLDI 200 (516)
Q Consensus 128 ~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~i~W~~~~~~~~~~~---~~~~~~~~~---~~~l~i 200 (516)
..+.+.|.|.+.| ..| ...++|.+++..+.... ......++. .+.|.|
T Consensus 13 ~~~~~~L~C~a~g-------------------------FyP~~I~vtW~~dg~~~~~~~~~s~~~~~~~~Ty~~~S~L~v 67 (94)
T cd05847 13 TSETIQLLCLISG-------------------------YTPGTIEVEWLVDGQVATLVAASTAPQKEEGSTFSTTSELNV 67 (94)
T ss_pred CCCCEEEEEEEEe-------------------------EECCCCEEEEEECCEECcCceeecccEECCCCcEEEEEEEEE
Confidence 3456899999992 234 47899999998863221 111111121 123344
Q ss_pred ccCCCCCCeeEEEEEEcCCC
Q psy7039 201 PFCSRSDTGHYSLTLENNLG 220 (516)
Q Consensus 201 ~~~~~~d~g~Y~c~~~~~~g 220 (516)
..-.-.+...|.|.+.....
T Consensus 68 ~~~~w~~~~~ytC~V~H~~~ 87 (94)
T cd05847 68 TQEDWKSGKTYTCKVTHQGT 87 (94)
T ss_pred chHHhcCCCeEEEEEEECCe
Confidence 43322345679999876543
|
IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG. |
| >cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains | Back alignment and domain information |
|---|
Probab=93.09 E-value=0.34 Score=34.43 Aligned_cols=37 Identities=27% Similarity=0.320 Sum_probs=28.0
Q ss_pred eeEEeeCCeeeccCCceEEeecCCeeEEEeccCCCCCCeeEEEEEEc
Q psy7039 171 NHGWSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLEN 217 (516)
Q Consensus 171 ~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~ 217 (516)
+|.|++ |..+.. ..+.+|.+.....+..|.|.|.+.+
T Consensus 18 si~W~k-G~~~~~---------~~~~tlnLGs~~~DPRG~Y~C~~s~ 54 (69)
T cd07691 18 NITWKK-GKEILE---------VSNTLLDLGSRINDPRGTYSCKESE 54 (69)
T ss_pred cEEEec-Cccccc---------ccccEEeccCcccCCCcceEecCcc
Confidence 599998 544431 1156888999999999999998765
|
Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex. |
| >PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells | Back alignment and domain information |
|---|
Probab=93.01 E-value=0.53 Score=36.65 Aligned_cols=63 Identities=21% Similarity=0.311 Sum_probs=40.5
Q ss_pred ccceeec--CcCcee--eEEeeCCeeecc---CCceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCceE
Q psy7039 159 TKGWVKL--SEPFLN--HGWSINGQVCQI---GGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTAT 223 (516)
Q Consensus 159 ~~~~~~~--~~p~~~--i~W~~~~~~~~~---~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~ 223 (516)
.+.|-+. +.+... ++|..+...... ..|+.. ...+.+|.|..++..|+|.|...+.+..|...
T Consensus 29 sv~WK~~l~s~~~~~~IltW~n~~~~~~~~~~n~r~~F--~~enlaLlIkaAq~qDSG~Y~LEvT~~sG~V~ 98 (108)
T PF11465_consen 29 SVQWKMQLPSQKKFEVILTWKNDSTPSYNSSFNNRFNF--TSENLALLIKAAQPQDSGLYCLEVTNESGKVC 98 (108)
T ss_dssp EEEEEEEETSSSEEE-EEEEETTEEEESSTTHHHHEEE--ETTTTEEEESS-SGGG-EEEEEEEEETTSCEE
T ss_pred EEEEEEEcccCCceEEEEEEcCCCcccccccccceEee--eccCceEEEeecCcccCceEEEEEEcCCCcEE
Confidence 4556333 344444 567655544433 234444 34567999999999999999999999888764
|
It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A. |
| >cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain | Back alignment and domain information |
|---|
Probab=92.74 E-value=0.66 Score=36.01 Aligned_cols=30 Identities=3% Similarity=-0.136 Sum_probs=23.3
Q ss_pred cCCeEEEEEEEeeecCC--ceEEEECCeecCC
Q psy7039 369 AGEEFTITVPFSGRPKP--TPIWTVNGDEVSP 398 (516)
Q Consensus 369 ~g~~~~l~C~~~g~p~~--~i~W~~~~~~l~~ 398 (516)
.+..++|.|.+.|--+. .+.|.++|..+..
T Consensus 15 ~~~~~tL~C~a~gFyP~~I~v~W~kng~~~~~ 46 (96)
T cd07697 15 KQGQGIYLCLLENFFPDVIQVHWREGNSPSIL 46 (96)
T ss_pred cCCCEEEEEEEEEEeCCCeEEEEEECCEECcC
Confidence 45678999999985444 7899999987643
|
IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. |
| >PHA02633 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=92.72 E-value=0.26 Score=34.09 Aligned_cols=41 Identities=27% Similarity=0.377 Sum_probs=33.5
Q ss_pred ceeeEEEccCCCCCceEEEEEEEecCCCcceeEEEEEecCC
Q psy7039 278 TTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKP 318 (516)
Q Consensus 278 ~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p 318 (516)
....|.|-++..+|+|.|.|...|..-....++.+.|....
T Consensus 16 ~~~nLwilpa~~sDSGiYiC~~rn~t~c~~~si~l~V~~~~ 56 (63)
T PHA02633 16 NCNNMLILNPTQSDSGIYMCITKNETYSDMMKFDLCICLRI 56 (63)
T ss_pred ccccEEEeccccccCcEEEEEEcCCCeeEEEEEEEEEeecc
Confidence 45678899999999999999999887777777777776544
|
|
| >cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins | Back alignment and domain information |
|---|
Probab=92.50 E-value=0.76 Score=35.59 Aligned_cols=69 Identities=10% Similarity=0.076 Sum_probs=40.0
Q ss_pred CeEEEEEEEe-eecCCceEEEECCeecCCCCceEEEEcCC---eEEEEEcCceecCCceEEEEEEEcCCCceeEE
Q psy7039 371 EEFTITVPFS-GRPKPTPIWTVNGDEVSPDGRIKFETSEN---QTIYRNKSAKRATDSGSYTIQLVNTVGSDSAS 441 (516)
Q Consensus 371 ~~~~l~C~~~-g~p~~~i~W~~~~~~l~~~~~~~~~~~~~---~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s 441 (516)
....+.|.+. |.|.+.|.|+.+..... .........+. .+.|.+.-... ++.-.|.|++.+..-.....
T Consensus 16 ~~~va~C~s~~gkPaa~IsW~~~~~g~~-~~~~~~~~~gt~tv~S~l~~~P~~~-d~Gk~ltC~v~h~al~~~~~ 88 (95)
T cd07703 16 PVPVAKCVSANGRPPARISWSSTLGGNA-NTTSKENGDGTVTVTSEYSLVPTPE-ANGKEVTCKVEHETLQEPQL 88 (95)
T ss_pred ccEEEEEEcCCCCCCcEEEEEcCCCCCe-eEEEEeCCCCCEEEEEEEEEecCHH-HCCCEEEEEEeCcccCCCeE
Confidence 4577899875 78888999998721110 00000111111 13566655455 66678999999987554333
|
Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. |
| >cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains | Back alignment and domain information |
|---|
Probab=92.46 E-value=0.6 Score=33.20 Aligned_cols=49 Identities=14% Similarity=0.203 Sum_probs=34.5
Q ss_pred CCeEEEEEEEeeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEc
Q psy7039 370 GEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVN 433 (516)
Q Consensus 370 g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n 433 (516)
...+.|.|... -.|.|++ |..+.... ...|.+..+.. +..|.|.|.+.+
T Consensus 6 ~~~V~L~C~~~----tsi~W~k-G~~~~~~~---------~~tlnLGs~~~-DPRG~Y~C~~s~ 54 (69)
T cd07691 6 EGKVFLKCNGA----TNITWKK-GKEILEVS---------NTLLDLGSRIN-DPRGTYSCKESE 54 (69)
T ss_pred CceEEEEecCC----CcEEEec-Cccccccc---------ccEEeccCccc-CCCcceEecCcc
Confidence 35688999652 4599999 54332111 24678888888 999999999877
|
Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex. |
| >cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain | Back alignment and domain information |
|---|
Probab=92.26 E-value=0.39 Score=33.86 Aligned_cols=52 Identities=25% Similarity=0.390 Sum_probs=33.8
Q ss_pred EcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcC
Q psy7039 368 LAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNT 434 (516)
Q Consensus 368 ~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~ 434 (516)
..|..|+|.|+..+. .+.|.+++..+..... .+.+.+-. +++|.|.|.+.+.
T Consensus 5 isGTtVtlTCP~~~~---~i~W~~n~~~~~g~~~----------~~~~~~~~--e~~G~Y~C~~~~~ 56 (65)
T cd07692 5 ISGTTVTVTCPLSGD---DIKWKKNDQVSQGSDE----------KYLSLNHF--SSSGYYHCTADNA 56 (65)
T ss_pred EeccEEEEECCCCCC---CceEEeCCccCCCCCc----------eEEeeccC--CCCceEEEEeCCC
Confidence 568999999986533 2899999865543211 22222222 5689999998543
|
Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex. |
| >KOG4802|consensus | Back alignment and domain information |
|---|
Probab=91.93 E-value=0.5 Score=45.65 Aligned_cols=86 Identities=16% Similarity=0.315 Sum_probs=57.5
Q ss_pred CCCCCCCcceEEEeeeCC---eeEEEecCCCCCCCCceeceEEEEEeCCCCeEEeE----EeecCCcEEEeCCCcCCCeE
Q psy7039 11 FDEPGKPTDLEATDWDKD---HVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAV----VVPAGETSCTVPGLIEGETY 83 (516)
Q Consensus 11 ~~~p~~p~~l~~~~~~~~---~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~~~~~~~----~~~~~~~~~~i~~l~~~~~y 83 (516)
.-.|.+|.+|.+-.+..+ ..+|.|.++ ....||..|.|.|.-.-..++..+ ....+...+.|.+|.|+..|
T Consensus 250 pkaPp~P~dl~l~~v~~dG~~~~~v~w~P~--~sdlPv~~Yki~Ws~~v~s~k~~m~tks~~~k~thq~si~~L~Pns~Y 327 (516)
T KOG4802|consen 250 PKAPPSPNDLKLIGVQFDGRYMLKVVWCPS--KSDLPVEKYKITWSLYVNSAKASMITKSSYVKDTHQFSIKELLPNSSY 327 (516)
T ss_pred CCCCcCcccceeeeeeecceEEEEEEeCCC--CCCCcceeeEEEeehhhhhhhhhcccccceeeccchhhhhhcCCCCeE
Confidence 455678899988776543 267888886 455789999999875221010000 11112334559999999999
Q ss_pred EEEEEEecCCCCCCC
Q psy7039 84 QFQVRAVNAAGPGEA 98 (516)
Q Consensus 84 ~~~~~a~n~~g~~~~ 98 (516)
.++++|....|.+..
T Consensus 328 ~VevqAi~y~g~~rL 342 (516)
T KOG4802|consen 328 YVEVQAISYLGSRRL 342 (516)
T ss_pred EEEEEEEEeccCccc
Confidence 999999988877654
|
|
| >TIGR00864 PCC polycystin cation channel protein | Back alignment and domain information |
|---|
Probab=91.78 E-value=42 Score=41.73 Aligned_cols=111 Identities=17% Similarity=0.121 Sum_probs=64.9
Q ss_pred CceEEEEEEEecCCCcceeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcC
Q psy7039 291 DSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAG 370 (516)
Q Consensus 291 d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g 370 (516)
..|.++..|.|..|....+..+.+..+-.- +. | | .....+..|
T Consensus 1670 G~Y~VtL~aSN~vG~~t~s~~i~v~epi~~----L~----------L-~----------------------aS~~~aavn 1712 (2740)
T TIGR00864 1670 GPCDIFLQAANLLGQATADCTIDFLEPAGN----LM----------L-Q----------------------ASDNPAAVN 1712 (2740)
T ss_pred ceEEEEEEEeecccceeeEEEEEEEEEcCc----eE----------E-e----------------------ccCCcccCC
Confidence 345566678899999888877777653221 11 1 0 111234567
Q ss_pred CeEEEEEEEeeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEEEEecC
Q psy7039 371 EEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDK 449 (516)
Q Consensus 371 ~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~v~~~ 449 (516)
+.+.|.....+.....+.|..++..-.. ........... . -..+..++.|.|..|....+..+.|..+
T Consensus 1713 ~~V~fs~~lt~GS~vty~W~~gdG~s~~-------~s~p~~tHtf~---~-~G~y~VtVta~N~vss~~~s~~V~Vqep 1780 (2740)
T TIGR00864 1713 ALINLSAELAEGSGLQYRWFLEEGDDLE-------TSEPFMSHSFP---S-AGLHLVTMKAFNELGSANASEEVDVQEP 1780 (2740)
T ss_pred CeEEEEEEecCCCCcEEEEEECCCCCcc-------cCCCceEEEcc---C-CceEEEEEEEEccccccceeEEEEEEec
Confidence 7888877666777778899876642110 01111122221 1 2234456678899998877888888654
|
Note: this model has been restricted to the amino half because for technical reasons. |
| >PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals | Back alignment and domain information |
|---|
Probab=91.30 E-value=1 Score=41.15 Aligned_cols=49 Identities=18% Similarity=0.108 Sum_probs=37.6
Q ss_pred cCceeeEEeeC-CeeeccCCceEEeecCCeeEEEeccCCCCCCeeEEEEEEcC
Q psy7039 167 EPFLNHGWSIN-GQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENN 218 (516)
Q Consensus 167 ~p~~~i~W~~~-~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~ 218 (516)
--.|.+.|..+ +..+....+..+...| .|++.+....++|.|+|..+-.
T Consensus 10 ~iDP~y~W~GP~g~~l~gn~~~nIT~TG---~L~~~~F~esmSG~YTCtLsYk 59 (271)
T PF07354_consen 10 LIDPTYLWTGPNGKPLSGNSYVNITETG---KLMFKNFQESMSGSYTCTLSYK 59 (271)
T ss_pred cCCCceEEECCCCcccCCCCeEEEccCc---eEEeeccccccCCceEEEEEEE
Confidence 35688999974 5566656667775444 6999999999999999998643
|
These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region |
| >PHA02982 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=91.22 E-value=0.56 Score=41.07 Aligned_cols=75 Identities=13% Similarity=0.298 Sum_probs=54.4
Q ss_pred ccEEEEcCCeEEEEEEEeee-cCCceEEEECCee-c----------C--------CCCceEEEEcCCeEEEEEcCceecC
Q psy7039 363 RDMTVLAGEEFTITVPFSGR-PKPTPIWTVNGDE-V----------S--------PDGRIKFETSENQTIYRNKSAKRAT 422 (516)
Q Consensus 363 ~~~~v~~g~~~~l~C~~~g~-p~~~i~W~~~~~~-l----------~--------~~~~~~~~~~~~~~~l~i~~~~~~~ 422 (516)
.++....++.+.|.|..... .-.+..|+.+... + . ....+..+.++..++|+|+++.. .
T Consensus 32 ~dv~a~vd~~V~L~C~~~~~~~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~g~~STLTIkk~~i-~ 110 (251)
T PHA02982 32 ADVNATVDQEVKLQCLFKDADEISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVSGNSSTFTMKKPDP-Q 110 (251)
T ss_pred hhhhccCCCcEEEEecCCCcchhhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEeccceeEEeccCCc-c
Confidence 34556789999999997433 3347889874321 1 1 12356667788889999999999 9
Q ss_pred CceEEEEEEEcCCCce
Q psy7039 423 DSGSYTIQLVNTVGSD 438 (516)
Q Consensus 423 ~~g~y~c~a~n~~G~~ 438 (516)
..|-|+|.|....+..
T Consensus 111 N~GCYtc~~ks~~~k~ 126 (251)
T PHA02982 111 NLGCFTCEAKDAEGKE 126 (251)
T ss_pred cCCceEEEEecCCCch
Confidence 9999999999876653
|
|
| >PHA03270 envelope glycoprotein C; Provisional | Back alignment and domain information |
|---|
Probab=91.12 E-value=7.2 Score=38.41 Aligned_cols=79 Identities=25% Similarity=0.221 Sum_probs=55.5
Q ss_pred eeeEEEccCCCCCceEEEEEEEecCCCcceeEEEEEe--cCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeecccc
Q psy7039 279 TASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVV--SKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKI 356 (516)
Q Consensus 279 ~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~~~~l~v~--~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~ 356 (516)
...|.|..++..++|.|+=...+..+.......+.|. ..|...
T Consensus 181 ~~~L~I~slt~aTeGvY~Wr~~~~~~~~~~~~~VtV~~yr~Psvs----------------------------------- 225 (466)
T PHA03270 181 TQRLVIQELTLATQGMYYWARGPADRPHRYGTWTRVRMFRRPSLS----------------------------------- 225 (466)
T ss_pred cceEEEEEcccccceEEEEEEecCCCceeeeeEEEEEEecCCccc-----------------------------------
Confidence 3469999999999999999988766643332223333 333221
Q ss_pred ccccccccEEEEcCCeEEEEEEEeeecCC---ceEEEECCeecC
Q psy7039 357 TSDLSIRDMTVLAGEEFTITVPFSGRPKP---TPIWTVNGDEVS 397 (516)
Q Consensus 357 ~~~~~~~~~~v~~g~~~~l~C~~~g~p~~---~i~W~~~~~~l~ 397 (516)
....-+..|+...-.|.+...-++ .+.|+.++..+.
T Consensus 226 -----v~~~PvL~Ge~Y~AtC~va~YYPp~Sv~lrWf~ng~~V~ 264 (466)
T PHA03270 226 -----IRPHAVLEGEPFGATCVAANYYPGDRAAFRWFEGGDEVF 264 (466)
T ss_pred -----ccCCccccCCCceEEEEeeeecCCCceEEEEEeCCcccc
Confidence 122346789999999999877655 699999998764
|
|
| >cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain | Back alignment and domain information |
|---|
Probab=90.95 E-value=2.1 Score=34.46 Aligned_cols=69 Identities=17% Similarity=0.190 Sum_probs=40.7
Q ss_pred cCCeEEEEEEEeeecCC--ceEEEECCeecCCCCc--eEEEEcC-C----eEEEEEcCceecCC-ceEEEEEEEcCCCce
Q psy7039 369 AGEEFTITVPFSGRPKP--TPIWTVNGDEVSPDGR--IKFETSE-N----QTIYRNKSAKRATD-SGSYTIQLVNTVGSD 438 (516)
Q Consensus 369 ~g~~~~l~C~~~g~p~~--~i~W~~~~~~l~~~~~--~~~~~~~-~----~~~l~i~~~~~~~~-~g~y~c~a~n~~G~~ 438 (516)
.+..++|.|.+.|.-+. .+.|.+++..+..+.. ....... + .+.|.|..-.. .+ .-.|.|.+.-.....
T Consensus 17 ~~~~~tL~Cla~gFyP~~I~V~W~kng~~l~~g~~~~~~~~~~~~gTYs~~S~L~v~~~~w-~~~~~~ytC~V~H~g~~~ 95 (115)
T cd05769 17 NKRKATLVCLATGFYPDHVSLSWKVNGKEVTDGVATDPQALRENTSTYSISSRLRVSATEW-FNPRNTFTCIVQFYGGTD 95 (115)
T ss_pred cCCCcEEEEEEEeEeCCCcEEEEEECCEECCCCcccccceecCCCCeEEEEEEEEEChHHh-ccCCCeEEEEEEEeCCcc
Confidence 45678999999886444 7899999987653321 0111111 1 13455543332 23 457999988765443
|
IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs. |
| >PF10179 DUF2369: Uncharacterised conserved protein (DUF2369); InterPro: IPR019326 This is a proline-rich region of a group of proteins found from plants to fungi | Back alignment and domain information |
|---|
Probab=90.63 E-value=16 Score=34.79 Aligned_cols=194 Identities=14% Similarity=0.165 Sum_probs=94.4
Q ss_pred EecceeeEEEccCCCCCceEEEEEEEecCCC-cceeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeec
Q psy7039 275 VTSTTASLNIKNSVRKDSGIYKIEAKNDYGI-DMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGA 353 (516)
Q Consensus 275 ~~~~~~~l~i~~l~~~d~g~y~c~a~n~~g~-~~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y 353 (516)
..+.....+|.++.++..|.+.+.|.|..-. ..+-.-..+.........+..+.+-.-..+.| ...+|.....|
T Consensus 10 Cvg~~t~~t~~~L~p~t~YyfdVF~vn~~~n~ssay~gt~~~t~~~~r~~~~~Lkdg~l~~~~l-----~~~~g~~~f~f 84 (300)
T PF10179_consen 10 CVGQKTNQTLSGLKPDTTYYFDVFVVNQLTNNSSAYLGTFARTREENRSKPTRLKDGKLTQVKL-----KGKGGFKFFSF 84 (300)
T ss_pred EcCCCceEEeccCCCCCeEEEEEEEEECCCCceeeeeEEEEEEccccCCCcEEcccCcEEEEEE-----CCcCceeEEEE
Confidence 3456678999999999999999999987433 33222222222111111223333221111121 11112111111
Q ss_pred cccccccccccEEEEcCCeEEEEEEE-eeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEE
Q psy7039 354 PKITSDLSIRDMTVLAGEEFTITVPF-SGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLV 432 (516)
Q Consensus 354 ~~~~~~~~~~~~~v~~g~~~~l~C~~-~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~ 432 (516)
. . +. .......+.|.... .|. ..+.-+.+|..+.....+ .+...+.+.++.+ .+.|..+..+.
T Consensus 85 ~-v-----P~--~~~~~~~~~l~v~~C~G~--V~v~i~r~gk~l~~~~~v-----~~~~~f~l~~~~~-g~~Yliri~~~ 148 (300)
T PF10179_consen 85 K-V-----PK--RSSTHQSLWLFVQSCSGS--VRVEISRNGKILLSQKNV-----EGLRHFRLSGVKP-GERYLIRIQIS 148 (300)
T ss_pred c-C-----Cc--CCCCCccEEEEEEeCCCe--EEEEEEECCeEEeeeecc-----cceEEEEECCCCC-CCeEEEEEEcc
Confidence 0 0 00 00011122221111 122 345555666554322111 1335788888877 66666666556
Q ss_pred cCCCceeEEEEEE-Ee------cCCCCCCCCccccc----ccCCeEEEEeeCCCCCCCCCcceEEEEEEecCCC
Q psy7039 433 NTVGSDSASCKVY-VV------DKPSPPQGPLDVSD----ITPESCSLSWKPPLDDGGSPITNYVVEKYESATG 495 (516)
Q Consensus 433 n~~G~~s~s~~l~-v~------~~p~~P~~~l~~~~----~~~~~~~l~W~~p~~~~~~~i~~Y~v~~~~~~~~ 495 (516)
|.... .....+. +. .-|..| .+..+.. -+-++++|.|.+.. +.. ..|-|..++....
T Consensus 149 ~~~e~-~~~~kV~aast~~~~~~~P~LP-~d~~Ik~f~~lrtC~SvTIAW~~s~-d~~---~kYCvy~~~~~~~ 216 (300)
T PF10179_consen 149 NSDEG-PSTFKVQAASTNPSKQPYPQLP-DDTSIKEFNKLRTCNSVTIAWLGSP-DRS---IKYCVYRREEHSN 216 (300)
T ss_pred CCCCC-ceEEEEEEecCCcccCCCCCCC-CCCceeEEcCCcccceEEEEEecCC-CCC---ceEEEEEEEecCc
Confidence 65433 3333443 22 224556 5555533 33489999999743 322 4599988877665
|
The function is largely unknown, although the entry contains Fibronectin type-III domain-containing protein C4orf31, which promotes matrix assembly and cell adhesiveness. |
| >cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin | Back alignment and domain information |
|---|
Probab=90.50 E-value=1.6 Score=33.95 Aligned_cols=14 Identities=7% Similarity=-0.043 Sum_probs=11.9
Q ss_pred EecCCeEEEEEeee
Q psy7039 126 IKAGQSFSFDVKEF 139 (516)
Q Consensus 126 v~~g~~~~l~C~~~ 139 (516)
+..|+.+.|.|.+.
T Consensus 11 l~~~~~~tLtC~v~ 24 (96)
T cd07696 11 LLLTKSVKLTCLVT 24 (96)
T ss_pred hccCCCeEEEEEEe
Confidence 45678899999999
|
IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. |
| >KOG1480|consensus | Back alignment and domain information |
|---|
Probab=90.47 E-value=0.15 Score=53.10 Aligned_cols=112 Identities=18% Similarity=0.192 Sum_probs=75.2
Q ss_pred CCCeEEEEEEEecCCCCCCCCCCCcceEeccCCCCCccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccC
Q psy7039 79 EGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANS 158 (516)
Q Consensus 79 ~~~~y~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~ 158 (516)
--+.|..+|.|-.+.|..+.......+-.. ...+. ..+..-.|.++....+.|...-
T Consensus 99 ~~~d~~cQc~a~~~~g~~~s~~a~vr~ay~----rk~f~-~~p~~q~V~~~s~~~l~cr~pe------------------ 155 (909)
T KOG1480|consen 99 GPEDYWCQCVAWSDDGTVKSRKATVRIAYL----RKHFE-QSPVGQEVQEETTLQLPCRPPE------------------ 155 (909)
T ss_pred CccceeeeeeeecCCCcchhhhHHHHHHHH----HHhhc-cChhhheecccccccccccCcc------------------
Confidence 456899999998888854432222111110 11111 3444566778888888887651
Q ss_pred ccceeecCcCceeeEEeeCCeeeccCCceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCceE
Q psy7039 159 TKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTAT 223 (516)
Q Consensus 159 ~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~ 223 (516)
+.|...+.|++++..+++....... ....|.|..+...|.|+|+|.+.|-.+...
T Consensus 156 -------~~paae~~w~k~e~~~~pd~n~~~~---~d~~li~~~arlsd~~nytc~a~ni~~~r~ 210 (909)
T KOG1480|consen 156 -------GDPKAEVEWLKNEVVIDPDANVIRA---SDHNLIISQARLSDSGNYTCEATNIVAKRK 210 (909)
T ss_pred -------cchhhhhhccccCCCCCccccchhh---hcCCccccchhhhhcccceeeeehhhcccc
Confidence 7888999999999888764333222 234789999999999999999998776654
|
|
| >PHA03273 envelope glycoprotein C; Provisional | Back alignment and domain information |
|---|
Probab=90.41 E-value=11 Score=37.56 Aligned_cols=116 Identities=15% Similarity=0.077 Sum_probs=69.8
Q ss_pred eeEEEccCCCCCceEEEEEEEecCCCcceeEEEEE--ecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccc
Q psy7039 280 ASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVV--VSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKIT 357 (516)
Q Consensus 280 ~~l~i~~l~~~d~g~y~c~a~n~~g~~~~~~~l~v--~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~ 357 (516)
..|.|..++..++|.|+=...+..+.......+.| ...|...
T Consensus 198 ~~LtI~sltaaTeGvYtWr~~~~n~t~~~~~~VtV~~yr~Psvs------------------------------------ 241 (486)
T PHA03273 198 FPLTIKSVDWRTAGVYVWSLYAKNGTLVNSTSVTVSTYNAPLVD------------------------------------ 241 (486)
T ss_pred cceEEEecchhhceEEEEEEecCCCceeeeeEEEEEEecCCccc------------------------------------
Confidence 46999999999999999776665554333334444 3333321
Q ss_pred cccccccEEEEcCCeEEEEEEEeeecCC---ceEEEECCeecCCCC----ceEEEEcCC---eEEEEEcCceecCCceEE
Q psy7039 358 SDLSIRDMTVLAGEEFTITVPFSGRPKP---TPIWTVNGDEVSPDG----RIKFETSEN---QTIYRNKSAKRATDSGSY 427 (516)
Q Consensus 358 ~~~~~~~~~v~~g~~~~l~C~~~g~p~~---~i~W~~~~~~l~~~~----~~~~~~~~~---~~~l~i~~~~~~~~~g~y 427 (516)
....-+..|+...-.|.+...-++ .+.|+.++..+.... .+.....+. .+.|++......+..=..
T Consensus 242 ----v~~~PvL~Ge~y~A~C~aa~YYPp~Sv~~rWf~dg~~V~~~~~~~~~~~~~~~gl~T~vStlt~~~~~~~~~PP~l 317 (486)
T PHA03273 242 ----LSVHPSLKGENYRAVCVVASYFPHSSVKLRWYKNAKEVDFTKYVTNASSVWVDGLITRISTLSIPVDPDEEYTPSL 317 (486)
T ss_pred ----ccCCccccCCCceEEEEeeeecCCCceEEEEEeCCeeccccccceeeEEEecCCceEEEEEEeccCcccCCCCCCc
Confidence 122346889999999999877555 699999998876211 111111122 133445443221333478
Q ss_pred EEEEEcCC
Q psy7039 428 TIQLVNTV 435 (516)
Q Consensus 428 ~c~a~n~~ 435 (516)
+|.+.=..
T Consensus 318 rC~v~W~r 325 (486)
T PHA03273 318 RCSIEWYR 325 (486)
T ss_pred eEEEEEcc
Confidence 99876433
|
|
| >cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins | Back alignment and domain information |
|---|
Probab=90.04 E-value=1.5 Score=33.91 Aligned_cols=66 Identities=9% Similarity=0.047 Sum_probs=40.2
Q ss_pred EecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCc--eeeEEeeCCeeeccCCceEEe----e-cCCeeEE
Q psy7039 126 IKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPF--LNHGWSINGQVCQIGGRADVQ----T-TKSETVL 198 (516)
Q Consensus 126 v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~--~~i~W~~~~~~~~~~~~~~~~----~-~~~~~~l 198 (516)
+.+|..+++.|.+.+ ..|. ..+.|++....+.... +.-. . ......+
T Consensus 12 l~~G~~vtv~C~v~~-------------------------v~P~~~l~v~LlkG~~~l~~~~-f~~~~~~ks~~~~~~~v 65 (99)
T cd07689 12 LEEGKPVTVKCEVPD-------------------------VYPFDRLEIELLKGETLLPSKS-FLEDMDKKSLETKSLEV 65 (99)
T ss_pred ccCCceEEEEEEecC-------------------------cccCCceEEEEecCcceecccc-cccccccCCCCCcceeE
Confidence 378999999999983 3444 7889988665554321 1100 0 1112344
Q ss_pred EeccCCCCCCe-eEEEEEEcC
Q psy7039 199 DIPFCSRSDTG-HYSLTLENN 218 (516)
Q Consensus 199 ~i~~~~~~d~g-~Y~c~~~~~ 218 (516)
.|.. +++|.| .|+|.|.-.
T Consensus 66 tftp-treD~g~~fsC~A~L~ 85 (99)
T cd07689 66 TFTP-TIEDIGKVLVCRAKLH 85 (99)
T ss_pred EEec-chhhCCcEEEEEEEEe
Confidence 4544 377777 699998643
|
Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains. |
| >cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins | Back alignment and domain information |
|---|
Probab=89.92 E-value=3.7 Score=31.83 Aligned_cols=68 Identities=18% Similarity=0.270 Sum_probs=43.2
Q ss_pred ccEEEEcCCeEEE-EEEE-eeecCCceEEEECCeecC-------CCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEc
Q psy7039 363 RDMTVLAGEEFTI-TVPF-SGRPKPTPIWTVNGDEVS-------PDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVN 433 (516)
Q Consensus 363 ~~~~v~~g~~~~l-~C~~-~g~p~~~i~W~~~~~~l~-------~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n 433 (516)
....+.+|+.+.+ .|.+ .|.|.+.|.|+.+..... .++.+.+. +.|.+..... ++.-.+.|.+..
T Consensus 9 ~~~~~~~g~~~~vA~C~sa~gkPaa~IsW~~~~~G~~~~~~~~~~ngT~TV~-----S~~~l~p~r~-d~G~~vtC~V~H 82 (97)
T cd07704 9 PSLLIDGGNGTTLAACCAAEGRPAADVTWETNVYGTSESHSQEHPNGTTTVT-----SEYIWVPSRH-ANGHPLTCVVSH 82 (97)
T ss_pred CeeEeecCcceeEEEEEccCCccCCEeEEeCCCCCccceeeecCCCCCEEEE-----EEEEEEeCHH-HCCcEEEEEEeC
Confidence 3456778888888 7876 578888999997632211 11122222 3566644445 677789999987
Q ss_pred CCC
Q psy7039 434 TVG 436 (516)
Q Consensus 434 ~~G 436 (516)
..-
T Consensus 83 ~al 85 (97)
T cd07704 83 PAL 85 (97)
T ss_pred ccc
Confidence 743
|
Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect |
| >PF09240 IL6Ra-bind: Interleukin-6 receptor alpha chain, binding; InterPro: IPR015321 Members of this entry adopt a structure consisting of an immunoglobulin-like beta-sandwich, with seven strands in two beta-sheets, in a Greek-key topology | Back alignment and domain information |
|---|
Probab=89.91 E-value=5.1 Score=31.20 Aligned_cols=78 Identities=18% Similarity=0.258 Sum_probs=50.3
Q ss_pred CCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCC-CeEEeEEeecC---CcEEEeCCCcC----CCeEEEEE
Q psy7039 16 KPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTG-NWEKAVVVPAG---ETSCTVPGLIE----GETYQFQV 87 (516)
Q Consensus 16 ~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~-~~~~~~~~~~~---~~~~~i~~l~~----~~~y~~~~ 87 (516)
+|.+|++..-+...+..+|.+- ....+-+.|.+.+..... ....+...... .....+..... ...+.+.+
T Consensus 1 ~~~nlsC~~~~~~~m~CtW~~g--~~~~~~t~y~L~~~~~~~~~~~eC~~y~~~~~~~~gC~~~~~~~~~~~~~~~~v~V 78 (99)
T PF09240_consen 1 KPQNLSCFIYNLEYMNCTWEPG--KEAPPDTQYTLYYWYSPLEEEKECPHYSKDSGTRIGCQFPVSEIDSSEFSQYNVCV 78 (99)
T ss_dssp S-EEEEEEEETTTEEEEEEECC--TTCSTTEEEEEEEEETTSSSEEEESEEEESTSSEEEEEEESCTT-TTTTSEEEEEE
T ss_pred CCeeCEEEEECCEEEEEEECCC--CCCCCcccEEEEEEcCCCCccccCCCccccCCceeEEEecCCCccccccceEEEEE
Confidence 4789999988889999999872 223345799999988664 34444444333 24445554443 34677888
Q ss_pred EEecCCCC
Q psy7039 88 RAVNAAGP 95 (516)
Q Consensus 88 ~a~n~~g~ 95 (516)
.+.+..|.
T Consensus 79 ~~ss~~~~ 86 (99)
T PF09240_consen 79 NGSSSAGS 86 (99)
T ss_dssp EEEETTEE
T ss_pred EeccCCCc
Confidence 77766554
|
They are required for binding to the cytokine Interleukin-6 []. ; PDB: 1N26_A 1P9M_C 3LB6_C 1PVH_A 3L5H_A 1BQU_A 1I1R_A 3QT2_B 3BPN_C 3BPO_C .... |
| >cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin | Back alignment and domain information |
|---|
Probab=89.89 E-value=0.59 Score=36.41 Aligned_cols=29 Identities=21% Similarity=0.248 Sum_probs=22.1
Q ss_pred EecCCeEEEEEeeeeccccccCccccccccccCccceeecC-c-C-ceeeEEeeCCee
Q psy7039 126 IKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLS-E-P-FLNHGWSINGQV 180 (516)
Q Consensus 126 v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-p-~~~i~W~~~~~~ 180 (516)
+..+..++|.|.+. + . | ...++|.+++..
T Consensus 16 l~~~~~atLtClV~--------------------------~f~~P~~i~V~W~~~g~~ 47 (99)
T cd04986 16 LLLGSSASLTCTLS--------------------------GLRDPEGAVFTWTPSGGK 47 (99)
T ss_pred hCcCCccEEEEEEe--------------------------ccCCCCCeEEEEEECCcc
Confidence 34578899999999 4 2 3 468999998765
|
IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. |
| >cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins | Back alignment and domain information |
|---|
Probab=89.88 E-value=1.2 Score=34.41 Aligned_cols=69 Identities=7% Similarity=-0.017 Sum_probs=40.9
Q ss_pred EEEcCCeEEEEEEEeee-cC--CceEEEECCeecCCCCceEE----EEcCCeEEEEEcCceecCCce-EEEEEEEcCCC
Q psy7039 366 TVLAGEEFTITVPFSGR-PK--PTPIWTVNGDEVSPDGRIKF----ETSENQTIYRNKSAKRATDSG-SYTIQLVNTVG 436 (516)
Q Consensus 366 ~v~~g~~~~l~C~~~g~-p~--~~i~W~~~~~~l~~~~~~~~----~~~~~~~~l~i~~~~~~~~~g-~y~c~a~n~~G 436 (516)
.+..|..+++.|.+.+. |. ..+.|+++...+........ ........+++.-. . +|.| .|.|+|.-..+
T Consensus 11 ~l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l~~~~f~~~~~~ks~~~~~~~vtftpt-r-eD~g~~fsC~A~L~l~ 87 (99)
T cd07689 11 PLEEGKPVTVKCEVPDVYPFDRLEIELLKGETLLPSKSFLEDMDKKSLETKSLEVTFTPT-I-EDIGKVLVCRAKLHID 87 (99)
T ss_pred cccCCceEEEEEEecCcccCCceEEEEecCcceecccccccccccCCCCCcceeEEEecc-h-hhCCcEEEEEEEEeec
Confidence 34799999999999754 43 36899877665543221110 00112234555443 4 5555 89999986554
|
Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains. |
| >PHA03269 envelope glycoprotein C; Provisional | Back alignment and domain information |
|---|
Probab=89.70 E-value=11 Score=37.86 Aligned_cols=80 Identities=19% Similarity=0.198 Sum_probs=54.2
Q ss_pred ceeeEEEccCCCCCceEEEEEEEecC-CCc--ceeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeecc
Q psy7039 278 TTASLNIKNSVRKDSGIYKIEAKNDY-GID--MADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAP 354 (516)
Q Consensus 278 ~~~~l~i~~l~~~d~g~y~c~a~n~~-g~~--~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~ 354 (516)
+...|.|..++..++|.|+=.+.+.. +.. ...+.+.+...|...
T Consensus 287 ~~~pL~I~sltaATeGvY~Wrv~~~~n~t~~~~~~VtV~~yr~PsVs--------------------------------- 333 (566)
T PHA03269 287 SDFSLHILSLDASTEGTYIWRVIHTANKNVINEHHITVMSYKRPNIT--------------------------------- 333 (566)
T ss_pred CccceEEeecccccCceEEEEEecCCCCceeeeeEEEEEEecCCCcc---------------------------------
Confidence 34579999999999999986665432 222 233444444444321
Q ss_pred ccccccccccEEEEcCCeEEEEEEEeeecCC---ceEEEECCeecC
Q psy7039 355 KITSDLSIRDMTVLAGEEFTITVPFSGRPKP---TPIWTVNGDEVS 397 (516)
Q Consensus 355 ~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~---~i~W~~~~~~l~ 397 (516)
....-+..|+...-.|.+...-++ .+.|+.++..+.
T Consensus 334 -------V~p~PVL~Ge~YkAtC~vA~YYPp~SvrlrWf~ng~~V~ 372 (566)
T PHA03269 334 -------VIGDPVLLGNPYAAYCKVNKYYPPHSVIVKWTSNFGNIG 372 (566)
T ss_pred -------ccCCccccCCCceEEEEeeeecCCCceEEEEEeCCcccC
Confidence 122346889999999999877655 699999988775
|
|
| >PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) [] | Back alignment and domain information |
|---|
Probab=89.69 E-value=2 Score=32.76 Aligned_cols=69 Identities=14% Similarity=0.177 Sum_probs=44.2
Q ss_pred eEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEeecCCeeEEEeccC
Q psy7039 124 VKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFC 203 (516)
Q Consensus 124 ~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~ 203 (516)
..+..|++++..|...++... ......|.|+.++..+ +..++... .+..+.+++.++
T Consensus 13 pvv~lGS~vtasC~l~~~c~~---------------------~~~a~~I~Wkln~~~i-P~~qy~~i-n~~~SsVT~~~~ 69 (89)
T PF06328_consen 13 PVVSLGSNVTASCVLKQNCSH---------------------SVNASQIVWKLNGEKI-PGSQYRVI-NDTVSSVTLPNL 69 (89)
T ss_dssp SEEETTS-EEEEEEE-CCCHC---------------------T-STTCEEEECSSCES-TCGCEEEE-STTEEEEEESS-
T ss_pred CEEeCCCCEEEEEEEECCCCC---------------------CcccceEEEEECCEEC-ChhHccee-CCeEEEEEEccC
Confidence 457899999999998721110 2356689999998844 45555554 344488899988
Q ss_pred CCCCCeeEEEEE
Q psy7039 204 SRSDTGHYSLTL 215 (516)
Q Consensus 204 ~~~d~g~Y~c~~ 215 (516)
....+-.|.|..
T Consensus 70 ~~~~~~L~cC~l 81 (89)
T PF06328_consen 70 NPTGATLFCCKL 81 (89)
T ss_dssp -SSEEEEEEEEE
T ss_pred CCCCceEEEEEE
Confidence 877777777764
|
The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B. |
| >cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin | Back alignment and domain information |
|---|
Probab=89.38 E-value=3.4 Score=31.97 Aligned_cols=65 Identities=8% Similarity=0.089 Sum_probs=36.7
Q ss_pred cCCeEEEEEEEeeecCC--ceEEEECCeecCCCCc-e-EEEE-cCCe---EEEEEcCceecCCceEEEEEEEcCC
Q psy7039 369 AGEEFTITVPFSGRPKP--TPIWTVNGDEVSPDGR-I-KFET-SENQ---TIYRNKSAKRATDSGSYTIQLVNTV 435 (516)
Q Consensus 369 ~g~~~~l~C~~~g~p~~--~i~W~~~~~~l~~~~~-~-~~~~-~~~~---~~l~i~~~~~~~~~g~y~c~a~n~~ 435 (516)
.++.+.|.|.+.|.-+. .+.|.++|.. ..+.. . .... .+.. +.|.+..-.- ...-.|.|.+....
T Consensus 15 ~~~~~~L~C~a~gFyP~~i~vtW~k~g~~-~~~~~~~~~~~~~dgty~~~s~L~v~~~~w-~~~~~ytC~V~H~~ 87 (95)
T cd04985 15 SSDSVTLGCLATGFLPEPVTFTWNSGSNS-TSGVKTYPAVLQSGGLYTASSQLTVPASEW-KGKESFYCKVEHPS 87 (95)
T ss_pred CCCcEEEEEEEeeEECCCcEEEEeECCEE-CCCcEECCCEeCCCCCEEEEEEEEEeHHHc-CCCCcEEEEEEeCC
Confidence 45678999999986543 7899999986 32210 0 1111 1111 2344433221 22557999988654
|
IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. |
| >smart00060 FN3 Fibronectin type 3 domain | Back alignment and domain information |
|---|
Probab=89.30 E-value=5.4 Score=28.41 Aligned_cols=26 Identities=23% Similarity=0.303 Sum_probs=20.8
Q ss_pred eEEEEEcCceecCCceEEEEEEEcCCC
Q psy7039 410 QTIYRNKSAKRATDSGSYTIQLVNTVG 436 (516)
Q Consensus 410 ~~~l~i~~~~~~~~~g~y~c~a~n~~G 436 (516)
...+.|.++.+ ...|.+++.|.+..|
T Consensus 56 ~~~~~i~~L~~-~~~Y~v~v~a~~~~g 81 (83)
T smart00060 56 STSYTLTGLKP-GTEYEFRVRAVNGAG 81 (83)
T ss_pred ccEEEEeCcCC-CCEEEEEEEEEcccC
Confidence 35688999999 888888888887654
|
One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins. |
| >cd00063 FN3 Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin | Back alignment and domain information |
|---|
Probab=89.22 E-value=5.3 Score=29.41 Aligned_cols=29 Identities=21% Similarity=0.268 Sum_probs=22.4
Q ss_pred CeEEEEEcCceecCCceEEEEEEEcCCCce
Q psy7039 409 NQTIYRNKSAKRATDSGSYTIQLVNTVGSD 438 (516)
Q Consensus 409 ~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~ 438 (516)
....+.|.++.+ ...|.+++.+.+..|.+
T Consensus 55 ~~~~~~i~~l~p-~~~Y~~~v~a~~~~~~~ 83 (93)
T cd00063 55 SETSYTLTGLKP-GTEYEFRVRAVNGGGES 83 (93)
T ss_pred cccEEEEccccC-CCEEEEEEEEECCCccC
Confidence 445788889999 88888898888765543
|
Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases. |
| >PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ] | Back alignment and domain information |
|---|
Probab=88.74 E-value=1.9 Score=35.33 Aligned_cols=76 Identities=11% Similarity=0.167 Sum_probs=39.6
Q ss_pred cCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeecc---C-Cce--------EE-eecCC
Q psy7039 128 AGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQI---G-GRA--------DV-QTTKS 194 (516)
Q Consensus 128 ~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~---~-~~~--------~~-~~~~~ 194 (516)
=.+++.|.|.+.+ +.+. ..+...+.|.+++..+-. . .+. .+ ....+
T Consensus 26 CN~tV~IPC~v~n-------------~~~~--------ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l~kG 84 (130)
T PF08204_consen 26 CNDTVVIPCFVNN-------------LEAN--------NISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKISELLKG 84 (130)
T ss_dssp T-SEEEE--BBSS----------------S--------SGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BEGGGGGT
T ss_pred cCCCEEEEeEecc-------------cccc--------ccceEEEEEEECCeEEEEEcCccceecccCccccchhHhhCC
Confidence 3688999999971 0000 235567899998876531 1 101 11 01223
Q ss_pred eeEEEeccCCCCCCeeEEEEEEcCCCceEEE
Q psy7039 195 ETVLDIPFCSRSDTGHYSLTLENNLGTATAS 225 (516)
Q Consensus 195 ~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~ 225 (516)
..+|.+.....- .|.|+|.+.....+.+..
T Consensus 85 ~aSL~~~~~~a~-~GnYTCeVt~~~~ege~~ 114 (130)
T PF08204_consen 85 NASLKMDKSDAV-EGNYTCEVTELSREGETT 114 (130)
T ss_dssp B--EEEEHHHHH--EEEEEEEEETTEEEEEE
T ss_pred CEEEEEcchhcc-ccceEEEEEecCCCceEE
Confidence 456777765444 899999998765544433
|
; PDB: 2VSC_B 2JJS_D 2JJT_C. |
| >cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4) | Back alignment and domain information |
|---|
Probab=87.91 E-value=3.7 Score=32.83 Aligned_cols=67 Identities=4% Similarity=0.029 Sum_probs=44.9
Q ss_pred cEEEEcCCeEEEEEEEeeecC---CceEEEECCee--------------c-CCCCce--EEEEcCCeEEEEEcCceecCC
Q psy7039 364 DMTVLAGEEFTITVPFSGRPK---PTPIWTVNGDE--------------V-SPDGRI--KFETSENQTIYRNKSAKRATD 423 (516)
Q Consensus 364 ~~~v~~g~~~~l~C~~~g~p~---~~i~W~~~~~~--------------l-~~~~~~--~~~~~~~~~~l~i~~~~~~~~ 423 (516)
...+..|..+.|.|.+.|... ..+.|.+.... . ....++ ....+.+...|.|.++.. +|
T Consensus 7 ~~lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~L~a-~D 85 (115)
T cd05721 7 PVLASSNGAASLVCEYTYNGFSKEFRASLLKGADSAVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQNLRA-NQ 85 (115)
T ss_pred CeEEcCCCCEEEEEEecCCccccEEEEEEEEeCCCCcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcCCCH-HH
Confidence 356778888999999966433 35778763211 0 012233 333445667899999999 99
Q ss_pred ceEEEEEE
Q psy7039 424 SGSYTIQL 431 (516)
Q Consensus 424 ~g~y~c~a 431 (516)
.+.|.|..
T Consensus 86 Ta~Y~Ca~ 93 (115)
T cd05721 86 TDIYFCKI 93 (115)
T ss_pred CeEEEEEe
Confidence 99999975
|
IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased |
| >PHA03271 envelope glycoprotein C; Provisional | Back alignment and domain information |
|---|
Probab=87.87 E-value=29 Score=34.16 Aligned_cols=121 Identities=17% Similarity=0.252 Sum_probs=70.4
Q ss_pred ecceeeEEEccCCCCCceEEEEEEEecCCCc--ceeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeec
Q psy7039 276 TSTTASLNIKNSVRKDSGIYKIEAKNDYGID--MADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGA 353 (516)
Q Consensus 276 ~~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~--~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y 353 (516)
......+.|.++...++|.|+....+..... .....+.+...|+..
T Consensus 203 tt~~m~v~I~svD~~t~Gy~~v~~~d~~N~~i~e~~~~~~v~~RPPsV-------------------------------- 250 (490)
T PHA03271 203 TTNTMGVEIRNVDYADNGYIQVIMRDPFNRPLLDKHIYIRVCQRPASV-------------------------------- 250 (490)
T ss_pred ccceeeEEEEEeecccceEEEEEecCCCCCccccceEEEEEEecCCCc--------------------------------
Confidence 3455688999999999998877666544332 233334444443321
Q ss_pred cccccccccccEEEEcCCeEEEEEEEeeecCC---ceEEEECCeecCCCCc---eE--EEEcCC---eEEEEEcCceecC
Q psy7039 354 PKITSDLSIRDMTVLAGEEFTITVPFSGRPKP---TPIWTVNGDEVSPDGR---IK--FETSEN---QTIYRNKSAKRAT 422 (516)
Q Consensus 354 ~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~---~i~W~~~~~~l~~~~~---~~--~~~~~~---~~~l~i~~~~~~~ 422 (516)
.....-+..|+...-.|.+...-++ .+.|+.+|........ +. .....+ .+.+.+.+... +
T Consensus 251 -------sV~a~PVL~Ge~YkAtC~vAnYYPP~SvrlrWf~nG~~V~~~~~rdt~~~w~d~~~g~S~VSTltl~a~~~-~ 322 (490)
T PHA03271 251 -------DVLAPPVLSGENYKASCIVRHFYPPGSVYVSWRQNGNIATPRKDRDGSFWWFESGRGATLVSTITLGNSGI-D 322 (490)
T ss_pred -------cccCCccccCCCceEEEEeeeecCCCceEEEEEeCCccccCccccceeEEEecCCCceeEEEEEEcccccC-C
Confidence 1112246789999999999877665 6999999877643221 11 111111 12344434333 3
Q ss_pred CceEEEEEEEcCCC
Q psy7039 423 DSGSYTIQLVNTVG 436 (516)
Q Consensus 423 ~~g~y~c~a~n~~G 436 (516)
..=..+|.+.=..+
T Consensus 323 ~PPsLRCeV~W~rd 336 (490)
T PHA03271 323 PPPKISCLVAWKQG 336 (490)
T ss_pred CCCCceEEEEEccC
Confidence 44478998764444
|
|
| >PHA02914 Immunoglobulin-like domain protein; Provisional | Back alignment and domain information |
|---|
Probab=86.63 E-value=34 Score=33.54 Aligned_cols=77 Identities=18% Similarity=0.250 Sum_probs=50.9
Q ss_pred ecceeeEEEccCCCCCceEEEEEEEecCCCcceeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccc
Q psy7039 276 TSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPK 355 (516)
Q Consensus 276 ~~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~ 355 (516)
.....+|+|..+.....|=|+|.|....-.....-.+.|. +.+.+.|.
T Consensus 342 dlk~STLTIkka~I~N~GCY~~~a~~g~~~~ec~~Cl~V~-----------------d~V~f~W~--------------- 389 (500)
T PHA02914 342 DLKNSTLTIKKAHINNAGCYEAQAFMGKFKEECRHCFKVA-----------------DHVFFKWN--------------- 389 (500)
T ss_pred chhhceEEeeeEEEEcCCceEEEEecCcchhhhhhheEec-----------------cEEEEEEE---------------
Confidence 3456789999999999999999998765444444444432 24556675
Q ss_pred cccccccccEEEEcC-CeEEEEEEEeee--cCCceEEEECCeec
Q psy7039 356 ITSDLSIRDMTVLAG-EEFTITVPFSGR--PKPTPIWTVNGDEV 396 (516)
Q Consensus 356 ~~~~~~~~~~~v~~g-~~~~l~C~~~g~--p~~~i~W~~~~~~l 396 (516)
..| ....+.|-+... .++.+.|..+|...
T Consensus 390 ------------~e~~n~T~V~Cyv~sy~~kp~si~wkvnGV~~ 421 (500)
T PHA02914 390 ------------TEGDNETKVACYAAQYDMQPFSILWKSNGVSF 421 (500)
T ss_pred ------------eccCceEEEEEEEEecccCCceeEEEEccEEe
Confidence 233 334567877544 34479999988654
|
|
| >KOG4597|consensus | Back alignment and domain information |
|---|
Probab=86.35 E-value=2.6 Score=41.76 Aligned_cols=83 Identities=12% Similarity=0.018 Sum_probs=57.6
Q ss_pred CcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEee---CCeeeccCCceEEe--ecC
Q psy7039 119 STLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSI---NGQVCQIGGRADVQ--TTK 193 (516)
Q Consensus 119 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~---~~~~~~~~~~~~~~--~~~ 193 (516)
.-+..-.+..+++.++.|-.. |.+.+.++|.+ +...+.....-.+. ...
T Consensus 201 ~cpa~w~vg~wetcS~tCg~~--------------------------G~q~r~V~c~qv~anr~~vv~~~nq~~e~p~vt 254 (560)
T KOG4597|consen 201 DCPAEWFVGDWETCSSTCGVQ--------------------------GRQYRVVTCEQVFANRENVVMRPNQTVENPVVT 254 (560)
T ss_pred cCcchhhcccchhhccccccc--------------------------CCcCceeeeehhhccccceeecCccccCCccee
Confidence 444455678899999999999 99999999986 22222111111111 012
Q ss_pred CeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEE
Q psy7039 194 SETVLDIPFCSRSDTGHYSLTLENNLGTATASAH 227 (516)
Q Consensus 194 ~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~ 227 (516)
....|.|-+....|+|-|+|.+.+..|.....+.
T Consensus 255 stcql~ic~ewq~~a~w~tCs~rcg~g~~~rdv~ 288 (560)
T KOG4597|consen 255 STCQLVICNEWQADAGWYTCSARCGAGFLRRDVP 288 (560)
T ss_pred eeeeEEEcchhhcCCCceeeccccccceeeccce
Confidence 2357899999999999999999998887665543
|
|
| >PHA03271 envelope glycoprotein C; Provisional | Back alignment and domain information |
|---|
Probab=86.29 E-value=14 Score=36.30 Aligned_cols=87 Identities=9% Similarity=0.085 Sum_probs=52.1
Q ss_pred CCcEEEeCCCcCCCeEEEEEEEecCCCCCCCCCCCcceEeccCCCCCccccCcccceEEecCCeEEEEEeeeeccccccC
Q psy7039 68 GETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKS 147 (516)
Q Consensus 68 ~~~~~~i~~l~~~~~y~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~ 147 (516)
.+..+.|.++.-.++|.|++...+.. ..+. ....++.....-+|.+... .--+..|+...-.|.+.+
T Consensus 205 ~~m~v~I~svD~~t~Gy~~v~~~d~~--N~~i-~e~~~~~~v~~RPPsVsV~---a~PVL~Ge~YkAtC~vAn------- 271 (490)
T PHA03271 205 NTMGVEIRNVDYADNGYIQVIMRDPF--NRPL-LDKHIYIRVCQRPASVDVL---APPVLSGENYKASCIVRH------- 271 (490)
T ss_pred ceeeEEEEEeecccceEEEEEecCCC--CCcc-ccceEEEEEEecCCCcccc---CCccccCCCceEEEEeee-------
Confidence 35668899999999998877654432 2221 1111222222234444322 233678999999999981
Q ss_pred ccccccccccCccceeecCcCceeeEEeeCCeeecc
Q psy7039 148 PLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQI 183 (516)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~ 183 (516)
|++ .-+..+.|+.||..+..
T Consensus 272 --------------YYP--P~SvrlrWf~nG~~V~~ 291 (490)
T PHA03271 272 --------------FYP--PGSVYVSWRQNGNIATP 291 (490)
T ss_pred --------------ecC--CCceEEEEEeCCccccC
Confidence 222 12468999999887754
|
|
| >cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin | Back alignment and domain information |
|---|
Probab=85.74 E-value=3.5 Score=31.92 Aligned_cols=27 Identities=11% Similarity=0.252 Sum_probs=21.0
Q ss_pred cCCeEEEEEeeeeccccccCccccccccccCccceeecC-cC-ceeeEEeeCCee
Q psy7039 128 AGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLS-EP-FLNHGWSINGQV 180 (516)
Q Consensus 128 ~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~p-~~~i~W~~~~~~ 180 (516)
.++.+.|.|.+. + .| ...++|.+++..
T Consensus 15 ~~~~~~L~C~a~--------------------------gFyP~~i~vtW~k~g~~ 43 (95)
T cd04985 15 SSDSVTLGCLAT--------------------------GFLPEPVTFTWNSGSNS 43 (95)
T ss_pred CCCcEEEEEEEe--------------------------eEECCCcEEEEeECCEE
Confidence 355689999999 4 23 568899999987
|
IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. |
| >PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ] | Back alignment and domain information |
|---|
Probab=85.74 E-value=1.9 Score=35.24 Aligned_cols=79 Identities=8% Similarity=0.152 Sum_probs=44.5
Q ss_pred EEcCCeEEEEEEEeee-----cCCceEEEECCeecC--CCC--ceE--------E-EEcCCeEEEEEcCceecCCceEEE
Q psy7039 367 VLAGEEFTITVPFSGR-----PKPTPIWTVNGDEVS--PDG--RIK--------F-ETSENQTIYRNKSAKRATDSGSYT 428 (516)
Q Consensus 367 v~~g~~~~l~C~~~g~-----p~~~i~W~~~~~~l~--~~~--~~~--------~-~~~~~~~~l~i~~~~~~~~~g~y~ 428 (516)
....+++.|.|.+... +...|.|..++..+- .+. ... + ....+..+|.+..... -.|.|+
T Consensus 24 t~CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~~a--~~GnYT 101 (130)
T PF08204_consen 24 TVCNDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDKSDA--VEGNYT 101 (130)
T ss_dssp -TT-SEEEE--BBSS---SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEHHHH--H-EEEE
T ss_pred EecCCCEEEEeEeccccccccceEEEEEEECCeEEEEEcCccceecccCccccchhHhhCCCEEEEEcchhc--cccceE
Confidence 4567899999999652 223589999886541 111 010 0 0112345688877554 389999
Q ss_pred EEEEcCCCceeEEEEEEEe
Q psy7039 429 IQLVNTVGSDSASCKVYVV 447 (516)
Q Consensus 429 c~a~n~~G~~s~s~~l~v~ 447 (516)
|.+......+...+.|...
T Consensus 102 CeVt~~~~ege~~i~Lk~~ 120 (130)
T PF08204_consen 102 CEVTELSREGETTIELKYR 120 (130)
T ss_dssp EEEEETTEEEEEEEEEEE-
T ss_pred EEEEecCCCceEEEEEEEE
Confidence 9999887777776666653
|
; PDB: 2VSC_B 2JJS_D 2JJT_C. |
| >PHA03270 envelope glycoprotein C; Provisional | Back alignment and domain information |
|---|
Probab=85.42 E-value=41 Score=33.40 Aligned_cols=70 Identities=14% Similarity=0.061 Sum_probs=48.2
Q ss_pred eEEEeccCCCCCCeeEEEEEEcCCCceEEEEEeeceee-------eeccccCCceEEEEEEEEccCCCCCceecccc
Q psy7039 196 TVLDIPFCSRSDTGHYSLTLENNLGTATASAHVTGTEF-------TDNNVHEGKAYEYRVSAVNAAGTEKPKISLDA 265 (516)
Q Consensus 196 ~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~~~~~~-------~~~~l~~g~~~~~~~~~~~~~g~p~p~i~W~~ 265 (516)
..|.|..++...+|.|+-...+..+.......+.+..| ....+..|+.|.-.|.+-+---.....+.|+.
T Consensus 182 ~~L~I~slt~aTeGvY~Wr~~~~~~~~~~~~~VtV~~yr~Psvsv~~~PvL~Ge~Y~AtC~va~YYPp~Sv~lrWf~ 258 (466)
T PHA03270 182 QRLVIQELTLATQGMYYWARGPADRPHRYGTWTRVRMFRRPSLSIRPHAVLEGEPFGATCVAANYYPGDRAAFRWFE 258 (466)
T ss_pred ceEEEEEcccccceEEEEEEecCCCceeeeeEEEEEEecCCcccccCCccccCCCceEEEEeeeecCCCceEEEEEe
Confidence 36999999999999999998776664433333443333 34567789999999998443323344677864
|
|
| >KOG4802|consensus | Back alignment and domain information |
|---|
Probab=84.87 E-value=11 Score=36.91 Aligned_cols=74 Identities=22% Similarity=0.373 Sum_probs=46.4
Q ss_pred eeeCCeeEEEecCCCCCCCCceeceEEEEE------------eCCC-CeEEeEEeecCCcEEEeCCCcCCCeEEEEEEEe
Q psy7039 24 DWDKDHVDLQWTPPISDGGSPITGYVVEMK------------DKTG-NWEKAVVVPAGETSCTVPGLIEGETYQFQVRAV 90 (516)
Q Consensus 24 ~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~------------~~~~-~~~~~~~~~~~~~~~~i~~l~~~~~y~~~~~a~ 90 (516)
.....++.+.|..-. .+.-|.+.+. +.+. .|..+... .....+.+.+++|+.-|+|++.|+
T Consensus 156 r~~~g~~av~w~~~~-----~~~v~~~~~~vr~~w~~g~hase~~~thwQtv~~t-~~e~~~~~t~~rPgRwyefrvaav 229 (516)
T KOG4802|consen 156 RRSRGSHAVDWKIES-----SLLVYYVHVEVRSHWGRGFHASELGPTHWQTVEKT-MEENTYIFTDMRPGRWYEFRVAAV 229 (516)
T ss_pred hhccCceeeeeeecc-----ccceeeeehhhhhhhcccccccccccccceeeeec-CCCceeeeeecCcceeEEEEEeee
Confidence 356777999997621 1233333322 1111 45554333 234478888999999999999999
Q ss_pred cCCCCCCCCCCCc
Q psy7039 91 NAAGPGEASKPTA 103 (516)
Q Consensus 91 n~~g~~~~s~~~~ 103 (516)
|..|....+.++.
T Consensus 230 n~~G~rGFs~PSk 242 (516)
T KOG4802|consen 230 NAYGFRGFSEPSK 242 (516)
T ss_pred ecccccccCCCCC
Confidence 9998755444443
|
|
| >cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin | Back alignment and domain information |
|---|
Probab=84.85 E-value=5.7 Score=30.96 Aligned_cols=68 Identities=13% Similarity=0.239 Sum_probs=37.3
Q ss_pred EEcCCeEEEEEEEeeec--C-CceEEEECCeecCCCCceEEEE-cCC---eEEEEEcCceecCCceEEEEEEEcCCC
Q psy7039 367 VLAGEEFTITVPFSGRP--K-PTPIWTVNGDEVSPDGRIKFET-SEN---QTIYRNKSAKRATDSGSYTIQLVNTVG 436 (516)
Q Consensus 367 v~~g~~~~l~C~~~g~p--~-~~i~W~~~~~~l~~~~~~~~~~-~~~---~~~l~i~~~~~~~~~g~y~c~a~n~~G 436 (516)
...+..+.|.|.+.+.. . ..|.|.+++.. .......... ++. .+.|.|..-.. ...-.|+|.+.....
T Consensus 16 l~~~~~atLtClV~~f~~P~~i~V~W~~~g~~-~~~~t~~~~~~dgTys~~S~L~v~~~~W-~~g~~ytC~V~H~~l 90 (99)
T cd04986 16 LLLGSSASLTCTLSGLRDPEGAVFTWTPSGGK-EAVQTSAESDQCGCYSVSSVLPGCAEEW-NKGEPFACTVTHPEG 90 (99)
T ss_pred hCcCCccEEEEEEeccCCCCCeEEEEEECCcc-CcEEcCcccCCCCCEEEEEEEEeCHHHh-cCCCeEEEEEECCCc
Confidence 34577899999998854 3 37999999864 1100000011 111 13455543222 223459999987654
|
IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. |
| >PHA03269 envelope glycoprotein C; Provisional | Back alignment and domain information |
|---|
Probab=82.26 E-value=60 Score=32.84 Aligned_cols=72 Identities=15% Similarity=0.125 Sum_probs=45.7
Q ss_pred CeeEEEeccCCCCCCeeEEEEEEcCC-CceEEEEEeecee-------eeeccccCCceEEEEEEEEccCCCCCceecccc
Q psy7039 194 SETVLDIPFCSRSDTGHYSLTLENNL-GTATASAHVTGTE-------FTDNNVHEGKAYEYRVSAVNAAGTEKPKISLDA 265 (516)
Q Consensus 194 ~~~~l~i~~~~~~d~g~Y~c~~~~~~-g~~~~~~~~~~~~-------~~~~~l~~g~~~~~~~~~~~~~g~p~p~i~W~~ 265 (516)
+.-.|.|.+++..++|.|.-...+.. +.......+.+.. .....+.+|+.|.-.|.+.+---.....+.|+.
T Consensus 287 ~~~pL~I~sltaATeGvY~Wrv~~~~n~t~~~~~~VtV~~yr~PsVsV~p~PVL~Ge~YkAtC~vA~YYPp~SvrlrWf~ 366 (566)
T PHA03269 287 SDFSLHILSLDASTEGTYIWRVIHTANKNVINEHHITVMSYKRPNITVIGDPVLLGNPYAAYCKVNKYYPPHSVIVKWTS 366 (566)
T ss_pred CccceEEeecccccCceEEEEEecCCCCceeeeeEEEEEEecCCCccccCCccccCCCceEEEEeeeecCCCceEEEEEe
Confidence 34579999999999999987665322 2222222222222 244567789999999998443333344677865
|
|
| >KOG1480|consensus | Back alignment and domain information |
|---|
Probab=81.33 E-value=1.2 Score=46.85 Aligned_cols=70 Identities=19% Similarity=0.198 Sum_probs=48.4
Q ss_pred eccccCCceEEEEEEEEccCCCCCceeccccc--ccceEEEEEecceeeEEEccCCCCCceEEEEEEEecCCCc
Q psy7039 235 DNNVHEGKAYEYRVSAVNAAGTEKPKISLDAL--IGKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGID 306 (516)
Q Consensus 235 ~~~l~~g~~~~~~~~~~~~~g~p~p~i~W~~~--~~~~~~~~~~~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~ 306 (516)
-..+..+....+.|.. ..|.|+..+.|.+. ......-........+++..+...|.|+|+|.|.|..+..
T Consensus 138 ~q~V~~~s~~~l~cr~--pe~~paae~~w~k~e~~~~pd~n~~~~~d~~li~~~arlsd~~nytc~a~ni~~~r 209 (909)
T KOG1480|consen 138 GQEVQEETTLQLPCRP--PEGDPKAEVEWLKNEVVIDPDANVIRASDHNLIISQARLSDSGNYTCEATNIVAKR 209 (909)
T ss_pred hheecccccccccccC--cccchhhhhhccccCCCCCccccchhhhcCCccccchhhhhcccceeeeehhhccc
Confidence 3455666677777766 47888888999652 1222222223456788889999999999999999987654
|
|
| >PHA02914 Immunoglobulin-like domain protein; Provisional | Back alignment and domain information |
|---|
Probab=80.87 E-value=6.4 Score=38.25 Aligned_cols=25 Identities=16% Similarity=0.151 Sum_probs=22.2
Q ss_pred eeEEEeccCCCCCCeeEEEEEEcCC
Q psy7039 195 ETVLDIPFCSRSDTGHYSLTLENNL 219 (516)
Q Consensus 195 ~~~l~i~~~~~~d~g~Y~c~~~~~~ 219 (516)
.++|+|..+..+.+|.|.|++....
T Consensus 345 ~STLTIkka~I~N~GCY~~~a~~g~ 369 (500)
T PHA02914 345 NSTLTIKKAHINNAGCYEAQAFMGK 369 (500)
T ss_pred hceEEeeeEEEEcCCceEEEEecCc
Confidence 5799999999999999999997643
|
|
| >PHA03042 CD47-like protein; Provisional | Back alignment and domain information |
|---|
Probab=80.39 E-value=9.1 Score=35.34 Aligned_cols=72 Identities=14% Similarity=0.169 Sum_probs=46.8
Q ss_pred EEcCCeEEEEEEEeee-----cCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEE
Q psy7039 367 VLAGEEFTITVPFSGR-----PKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSAS 441 (516)
Q Consensus 367 v~~g~~~~l~C~~~g~-----p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s 441 (516)
....+++.+.|.++.- ....+.|..++..+.. .... +.++|+++... .-.|+|+|.|.+........
T Consensus 28 T~CN~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~If~-----~n~t-n~aSL~~~f~~--~l~GNYTCEv~~l~n~gk~~ 99 (286)
T PHA03042 28 TTCNKTIVIVCNLNLLIYYNISNIHINWKFNNKVIFK-----KNNT-NTSSLKFNFSK--NLSGNYTCEAINKFNKIKNT 99 (286)
T ss_pred EecCceEEEEeecCChhhcCccceEEEEEeCCeeEEE-----ecCC-cceEEEEeccc--cCCCceeEEEeecccCccEE
Confidence 4567889999998653 3446999999875421 1111 23567775543 56899999999876555444
Q ss_pred EEEEE
Q psy7039 442 CKVYV 446 (516)
Q Consensus 442 ~~l~v 446 (516)
..+..
T Consensus 100 IeLk~ 104 (286)
T PHA03042 100 IELQY 104 (286)
T ss_pred EEEEE
Confidence 44444
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 516 | ||||
| 2nzi_A | 305 | Crystal Structure Of Domains A168-A170 From Titin L | 6e-16 | ||
| 3lpw_A | 197 | Crystal Structure Of The Fniii-Tandem A77-A78 From | 9e-11 | ||
| 3lpw_A | 197 | Crystal Structure Of The Fniii-Tandem A77-A78 From | 4e-07 | ||
| 1bpv_A | 112 | Titin Module A71 From Human Cardiac Muscle, Nmr, 50 | 2e-09 | ||
| 2crz_A | 110 | Solution Structure Of The Fifth Fniii Domain Of Hum | 8e-09 | ||
| 1wf5_A | 121 | Solution Structure Of The First Fn3 Domain Of Sidek | 3e-08 | ||
| 2yux_A | 120 | Solution Structure Of 3rd Fibronectin Type Three Do | 2e-07 | ||
| 2yux_A | 120 | Solution Structure Of 3rd Fibronectin Type Three Do | 3e-05 | ||
| 1x4z_A | 121 | Solution Structure Of The 2nd Fibronectin Type Iii | 2e-07 | ||
| 3uto_A | 573 | Twitchin Kinase Region From C.Elegans (Fn31-Nl-Kin- | 2e-07 | ||
| 3uto_A | 573 | Twitchin Kinase Region From C.Elegans (Fn31-Nl-Kin- | 2e-06 | ||
| 1uey_A | 127 | Solution Structure Of The First Fibronectin Type Ii | 5e-07 | ||
| 2e7c_A | 118 | Solution Structure Of The 6th Ig-Like Domain From H | 6e-07 | ||
| 3puc_A | 99 | Atomic Resolution Structure Of Titin Domain M7 Leng | 2e-06 | ||
| 1gxe_A | 139 | Central Domain Of Cardiac Myosin Binding Protein C | 1e-05 | ||
| 3knb_A | 100 | Crystal Structure Of The Titin C-Terminus In Comple | 2e-05 | ||
| 2wp3_T | 102 | Crystal Structure Of The Titin M10-Obscurin Like 1 | 2e-05 | ||
| 1wit_A | 93 | Twitchin Immunoglobulin Superfamily Domain (Igsf Mo | 4e-05 | ||
| 2cqv_A | 114 | Solution Structure Of The Eighth Ig-Like Domain Of | 1e-04 | ||
| 1u2h_A | 99 | X-Ray Structure Of The N-Terminally Truncated Human | 3e-04 | ||
| 1uem_A | 117 | Solution Structure Of The First Fibronectin Type Ii | 3e-04 | ||
| 3lcy_A | 197 | Titin Ig Tandem Domains A164-A165 Length = 197 | 5e-04 | ||
| 2db8_A | 110 | Solution Structures Of The Fn3 Domain Of Human Trip | 7e-04 |
| >pdb|2NZI|A Chain A, Crystal Structure Of Domains A168-A170 From Titin Length = 305 | Back alignment and structure |
|
| >pdb|3LPW|A Chain A, Crystal Structure Of The Fniii-Tandem A77-A78 From The A-Band Of Titin Length = 197 | Back alignment and structure |
|
| >pdb|3LPW|A Chain A, Crystal Structure Of The Fniii-Tandem A77-A78 From The A-Band Of Titin Length = 197 | Back alignment and structure |
|
| >pdb|1BPV|A Chain A, Titin Module A71 From Human Cardiac Muscle, Nmr, 50 Structures Length = 112 | Back alignment and structure |
|
| >pdb|2CRZ|A Chain A, Solution Structure Of The Fifth Fniii Domain Of Human Fibronectin Type Iii Domain Containing Protein 3a Length = 110 | Back alignment and structure |
|
| >pdb|1WF5|A Chain A, Solution Structure Of The First Fn3 Domain Of Sidekick-2 Protein Length = 121 | Back alignment and structure |
|
| >pdb|2YUX|A Chain A, Solution Structure Of 3rd Fibronectin Type Three Domain Of Slow Type Myosin-Binding Protein C Length = 120 | Back alignment and structure |
|
| >pdb|2YUX|A Chain A, Solution Structure Of 3rd Fibronectin Type Three Domain Of Slow Type Myosin-Binding Protein C Length = 120 | Back alignment and structure |
|
| >pdb|1X4Z|A Chain A, Solution Structure Of The 2nd Fibronectin Type Iii Domain From Mouse Biregional Cell Adhesion Molecule-RelatedDOWN- Regulated Oncogenes (Cdon) Binding Protein Length = 121 | Back alignment and structure |
|
| >pdb|3UTO|A Chain A, Twitchin Kinase Region From C.Elegans (Fn31-Nl-Kin-Crd-Ig26) Length = 573 | Back alignment and structure |
|
| >pdb|3UTO|A Chain A, Twitchin Kinase Region From C.Elegans (Fn31-Nl-Kin-Crd-Ig26) Length = 573 | Back alignment and structure |
|
| >pdb|1UEY|A Chain A, Solution Structure Of The First Fibronectin Type Iii Domain Of Human Kiaa0343 Protein Length = 127 | Back alignment and structure |
|
| >pdb|2E7C|A Chain A, Solution Structure Of The 6th Ig-Like Domain From Human Myosin-Binding Protein C, Fast-Type Length = 118 | Back alignment and structure |
|
| >pdb|3PUC|A Chain A, Atomic Resolution Structure Of Titin Domain M7 Length = 99 | Back alignment and structure |
|
| >pdb|3KNB|A Chain A, Crystal Structure Of The Titin C-Terminus In Complex With Obscurin- Like 1 Length = 100 | Back alignment and structure |
|
| >pdb|2WP3|T Chain T, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig Complex Length = 102 | Back alignment and structure |
|
| >pdb|1WIT|A Chain A, Twitchin Immunoglobulin Superfamily Domain (Igsf Module) (Ig 18'), Nmr, Minimized Average Structure Length = 93 | Back alignment and structure |
|
| >pdb|2CQV|A Chain A, Solution Structure Of The Eighth Ig-Like Domain Of Human Myosin Light Chain Kinase Length = 114 | Back alignment and structure |
|
| >pdb|1U2H|A Chain A, X-Ray Structure Of The N-Terminally Truncated Human Apep-1 Length = 99 | Back alignment and structure |
|
| >pdb|1UEM|A Chain A, Solution Structure Of The First Fibronectin Type Iii Domain Of Human Kiaa1568 Protein Length = 117 | Back alignment and structure |
|
| >pdb|3LCY|A Chain A, Titin Ig Tandem Domains A164-A165 Length = 197 | Back alignment and structure |
|
| >pdb|2DB8|A Chain A, Solution Structures Of The Fn3 Domain Of Human Tripartite Motif Protein 9 Length = 110 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305 | Back alignment and structure |
|---|
Score = 152 bits (385), Expect = 2e-42
Identities = 62/275 (22%), Positives = 97/275 (35%), Gaps = 50/275 (18%)
Query: 231 TEFTDNNVHEGKAYEYRVSAVNAAGTEKPKIS-------LDALIGKRIKEFVTSTTASLN 283
E + NV G KP + + A K + L
Sbjct: 9 EELRNLNVRYQSNATLVCKV---TGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLI 65
Query: 284 IKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPV 343
I + D+ +Y++ A N G + V
Sbjct: 66 IASVTDDDATVYQVRATNQGGSVSGTASLEVEV--------------------------- 98
Query: 344 DDGGTPITGAPKITSDLSIR---DMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDG 400
KI ++ + L GE +I +PFSG+P P W D + +G
Sbjct: 99 ---------PAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNG 149
Query: 401 RIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQGPLDVS 460
+ + + T + D+G Y + N G D + ++ V D P PP+G VS
Sbjct: 150 HYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVADVPDPPRGV-KVS 208
Query: 461 DITPESCSLSWKPPLDDGGSPITNYVVEKYESATG 495
D++ +S +L+W P DGGS ITNY+VEK +
Sbjct: 209 DVSRDSVNLTWTEPASDGGSKITNYIVEKCATTAE 243
|
| >2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305 | Back alignment and structure |
|---|
Score = 111 bits (279), Expect = 1e-27
Identities = 37/99 (37%), Positives = 50/99 (50%), Gaps = 3/99 (3%)
Query: 12 DEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDK-TGNWEKAVVVPAGET 70
D P P ++ +D +D V+L WT P SDGGS IT Y+VE W + ET
Sbjct: 197 DVPDPPRGVKVSDVSRDSVNLTWTEPASDGGSKITNYIVEKCATTAERWLRVGQAR--ET 254
Query: 71 SCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKP 109
TV L +YQF+V A N G + S+P+ P + K
Sbjct: 255 RYTVINLFGKTSYQFRVIAENKFGLSKPSEPSEPTITKE 293
|
| >2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305 | Back alignment and structure |
|---|
Score = 99.1 bits (247), Expect = 3e-23
Identities = 47/196 (23%), Positives = 76/196 (38%), Gaps = 18/196 (9%)
Query: 174 WSING-QVCQIGGRADVQTTKSET-VLDIPFCSRSDTGHYSLTLENNLGTATASAHVTGT 231
W G ++ G + +Q K L I + D Y + N G+ + +A +
Sbjct: 38 WYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVE 97
Query: 232 EFTDNNV--HEGKAYEYRVSA-------VNAAGTEKPKIS---LDALI---GKRIKEFVT 276
++ + +G P I+ LI G
Sbjct: 98 VPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTR 157
Query: 277 STTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVS 336
S T+ + RKD+G Y + AKN +GID +E+ V P PP G + V+ +SV+
Sbjct: 158 SFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVADVPDPPRGVK-VSDVSRDSVN 216
Query: 337 MSWKPPVDDGGTPITG 352
++W P DGG+ IT
Sbjct: 217 LTWTEPASDGGSKITN 232
|
| >2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305 | Back alignment and structure |
|---|
Score = 64.8 bits (158), Expect = 1e-11
Identities = 25/116 (21%), Positives = 41/116 (35%), Gaps = 9/116 (7%)
Query: 353 APKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDG---RIKFETSEN 409
AP +L R++ V T+ +G PKP W G E+ DG RI+
Sbjct: 4 APHFKEEL--RNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGY 61
Query: 410 QTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPS--PPQGPLDVSDIT 463
+ D+ Y ++ N GS S + + V P+ + +
Sbjct: 62 HQLIIASVTD--DDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVH 115
|
| >2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389 | Back alignment and structure |
|---|
Score = 143 bits (362), Expect = 3e-38
Identities = 45/245 (18%), Positives = 80/245 (32%), Gaps = 42/245 (17%)
Query: 254 AGTEKPKISLDALIGKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVV 313
A D + RI+ ++SL+IK+ DSG Y EA + G + +
Sbjct: 37 AVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLD 96
Query: 314 VVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEF 373
+ APK S+ + G
Sbjct: 97 I------------------------------------EYAPKFISNQT--IYYSWEGNPI 118
Query: 374 TITVPFSGRPKPTPIWTVNGDEVSPDG--RIKFETSENQTIYRNKSAKRATDSGSYTIQL 431
I+ P + W + + +K ++ + I D G Y
Sbjct: 119 NISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSD-NDFGRYNCTA 177
Query: 432 VNTVGSDSASCKVYVVDKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYE 491
N +G+ + + D PS P G + +++ + +S+ P GG PI +Y V+ E
Sbjct: 178 TNHIGTRFQEYILALADVPSSPYGVK-IIELSQTTAKVSFNKPDSHGGVPIHHYQVDVKE 236
Query: 492 SATGV 496
A+ +
Sbjct: 237 VASEI 241
|
| >2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389 | Back alignment and structure |
|---|
Score = 135 bits (342), Expect = 2e-35
Identities = 63/349 (18%), Positives = 108/349 (30%), Gaps = 61/349 (17%)
Query: 162 WVKLSEPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGT 221
W + + F + GR +V+ + L I SD+G Y + +G
Sbjct: 34 WKRAVDGFT-----FTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIGG 88
Query: 222 ATASAHVT---GTEFTDN-NVHEGKAYEYRVSAVNAAGTEKPKIS-------LDALIGKR 270
S ++ +F N ++ + + I L A
Sbjct: 89 HQKSMYLDIEYAPKFISNQTIYYSWEGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTN 148
Query: 271 IKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTV 330
+K + T L I + D G Y A N G + + + P P G +
Sbjct: 149 LKTYSTGRKMILEIAPTSDNDFGRYNCTATNHIGTRFQEYILALADVPSSPYGVK-IIEL 207
Query: 331 TPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWT 390
+ + +S+ P GG PI +
Sbjct: 208 SQTTAKVSFNKPDSHGGVPIHH------------------------------------YQ 231
Query: 391 VNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVG----SDSASCKVYV 446
V+ EV+ + + QT+ + + T + + VN G S +
Sbjct: 232 VDVKEVASEIWKIVRSHGVQTMVVLNNLEPNT-TYEIRVAAVNGKGQGDYSKIEIFQTLP 290
Query: 447 VDKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATG 495
V +PSPP + + +S LS DDGG+PI Y+V+
Sbjct: 291 VREPSPP--SIHGQPSSGKSFKLSITKQ-DDGGAPILEYIVKYRSKDKE 336
|
| >2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389 | Back alignment and structure |
|---|
Score = 102 bits (255), Expect = 8e-24
Identities = 26/98 (26%), Positives = 40/98 (40%)
Query: 12 DEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVVVPAGETS 71
D P P ++ + + + + P S GG PI Y V++K+ K V +T
Sbjct: 194 DVPSSPYGVKIIELSQTTAKVSFNKPDSHGGVPIHHYQVDVKEVASEIWKIVRSHGVQTM 253
Query: 72 CTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKP 109
+ L TY+ +V AVN G G+ SK
Sbjct: 254 VVLNNLEPNTTYEIRVAAVNGKGQGDYSKIEIFQTLPV 291
|
| >2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389 | Back alignment and structure |
|---|
Score = 99.9 bits (249), Expect = 5e-23
Identities = 24/109 (22%), Positives = 37/109 (33%), Gaps = 3/109 (2%)
Query: 2 DHSVLIKNPFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDK-TGNWE 60
+ P EP P + L T DGG+PI Y+V+ + K +
Sbjct: 282 KIEIFQTLPVREPS-PPSIHGQPSSGKSFKLSITKQ-DDGGAPILEYIVKYRSKDKEDQW 339
Query: 61 KAVVVPAGETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKP 109
V + + L Y+ Q+ A N G E + + KP
Sbjct: 340 LEKKVQGNKDHIILEHLQWTMGYEVQITAANRLGYSEPTVYEFSMPPKP 388
|
| >2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389 | Back alignment and structure |
|---|
Score = 59.4 bits (144), Expect = 9e-10
Identities = 31/169 (18%), Positives = 50/169 (29%), Gaps = 21/169 (12%)
Query: 354 PKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIW-------TVNGDEVSPDGRIKFET 406
P I +++ T + T+ G P P W T + S DGRI+ +
Sbjct: 2 PHIIQ---LKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKG 58
Query: 407 SENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQGPLDVSDITPES 466
+ K K +DSG Y + + +G S + + P
Sbjct: 59 QHGSSSLHIKDVKL-SDSGRYDCEAASRIGGHQKSMYLDIEYAPKFISNQTIYYSWEGNP 117
Query: 467 ----CSLSWKPPLD----DGGSPIT--NYVVEKYESATGVSDLFISKSE 505
C + PP + N K S L I+ +
Sbjct: 118 INISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTS 166
|
| >3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} Length = 215 | Back alignment and structure |
|---|
Score = 123 bits (309), Expect = 1e-32
Identities = 30/142 (21%), Positives = 46/142 (32%), Gaps = 8/142 (5%)
Query: 353 APKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDG--RIKFETSENQ 410
APK+ + G + IT P T W +G + IK + +
Sbjct: 19 APKLQGP---VAVYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNIKIYNTPSA 75
Query: 411 TIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQGPLDVSDITPESCSLS 470
+ D G+Y VN +G +S + D PS P + + +
Sbjct: 76 SYLEVTPDSE-NDFGNYNCTAVNRIGQESLEFILVQADTPSSPSID--QVEPYSSTAQVQ 132
Query: 471 WKPPLDDGGSPITNYVVEKYES 492
+ P GG PI Y E
Sbjct: 133 FDEPEATGGVPILKYKAEWRAV 154
|
| >3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} Length = 215 | Back alignment and structure |
|---|
Score = 87.6 bits (217), Expect = 6e-20
Identities = 26/104 (25%), Positives = 39/104 (37%), Gaps = 8/104 (7%)
Query: 12 DEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDK-----TGNWEKAVVVP 66
D P P+ + + +Q+ P + GG PI Y E + W A
Sbjct: 112 DTPSSPSIDQVEPY-SSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEAS 170
Query: 67 AGETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPK 110
E T+ GL TY ++ A+N G GE S + +P
Sbjct: 171 -MEGIVTIVGLKPETTYAVRLAALNGKGLGEISAAS-EFKTQPV 212
|
| >3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} Length = 215 | Back alignment and structure |
|---|
Score = 85.6 bits (212), Expect = 3e-19
Identities = 21/109 (19%), Positives = 33/109 (30%), Gaps = 9/109 (8%)
Query: 251 VNAAGTEKPKIS-------LDALIGKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDY 303
IS L + IK + T + + L + D G Y A N
Sbjct: 40 CEVFAYPSATISWFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRI 99
Query: 304 GIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITG 352
G + + +V P P+ + + + P GG PI
Sbjct: 100 GQESLEFILVQADTPSSPSIDQ--VEPYSSTAQVQFDEPEATGGVPILK 146
|
| >3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} Length = 215 | Back alignment and structure |
|---|
Score = 46.4 bits (110), Expect = 6e-06
Identities = 13/61 (21%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Query: 174 WSINGQVCQIGGRADVQ--TTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVTGT 231
W +GQ+ ++++ T S + L++ S +D G+Y+ T N +G + +
Sbjct: 52 WFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQESLEFILVQA 111
Query: 232 E 232
+
Sbjct: 112 D 112
|
| >1bpv_A Titin, A71, connectin; fibronectin type III; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 112 | Back alignment and structure |
|---|
Score = 118 bits (298), Expect = 3e-32
Identities = 43/111 (38%), Positives = 52/111 (46%), Gaps = 5/111 (4%)
Query: 1 MDHSVLIKNPFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDK-TGNW 59
M H +P D PGKP L T V L+W P GG IT Y+VE +D G W
Sbjct: 1 MHHHHHHSSPIDPPGKPVPLNITR---HTVTLKWAKPEYTGGFKITSYIVEKRDLPNGRW 57
Query: 60 EKAVVVPAGETSCTVPGLIEGETYQFQVRAVNAAGP-GEASKPTAPIVAKP 109
KA E TV GL E Y+F+V A NAAG S+P+ I +
Sbjct: 58 LKANFSNILENEFTVSGLTEDAAYEFRVIAKNAAGAISPPSEPSDAITCRD 108
|
| >1bpv_A Titin, A71, connectin; fibronectin type III; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 112 | Back alignment and structure |
|---|
Score = 61.6 bits (150), Expect = 5e-12
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 450 PSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATG 495
PP P+ +IT + +L W P GG IT+Y+VEK + G
Sbjct: 11 IDPPGKPV-PLNITRHTVTLKWAKPEYTGGFKITSYIVEKRDLPNG 55
|
| >1bpv_A Titin, A71, connectin; fibronectin type III; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 112 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 7e-07
Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 318 PGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITG 352
PP P+ +T +V++ W P GG IT
Sbjct: 11 IDPPGKPVP-LNITRHTVTLKWAKPEYTGGFKITS 44
|
| >2vkw_A Neural cell adhesion molecule 1,140 kDa isoform; adhesion receptor; 2.3A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 2vkx_A 1lwr_A Length = 209 | Back alignment and structure |
|---|
Score = 119 bits (301), Expect = 1e-31
Identities = 25/108 (23%), Positives = 40/108 (37%), Gaps = 1/108 (0%)
Query: 4 SVLIKNPFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAV 63
S P EP P D + + + DGGSPI Y+V + + W+ +
Sbjct: 100 SEFKTQPVREPSAPKLEGQMGEDGNSIKVNLIKQ-DDGGSPIRHYLVRYRALSSEWKPEI 158
Query: 64 VVPAGETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKN 111
+P+G + L Y+ V A N G +A+ A +
Sbjct: 159 RLPSGSDHVMLKSLDWNAEYEVYVVAENQQGKSKAAHFVFRTAAAHHH 206
|
| >2vkw_A Neural cell adhesion molecule 1,140 kDa isoform; adhesion receptor; 2.3A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 2vkx_A 1lwr_A Length = 209 | Back alignment and structure |
|---|
Score = 91.4 bits (227), Expect = 2e-21
Identities = 23/99 (23%), Positives = 38/99 (38%), Gaps = 6/99 (6%)
Query: 10 PFDEPGKPT--DLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDK-TGNWEKA---V 63
P + P+ ++ + +Q+ P + GG PI Y E + W
Sbjct: 2 PLAQADTPSSPSIDQVEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDA 61
Query: 64 VVPAGETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPT 102
+ E T+ GL TY ++ A+N G GE S +
Sbjct: 62 KEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAAS 100
|
| >2vkw_A Neural cell adhesion molecule 1,140 kDa isoform; adhesion receptor; 2.3A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 2vkx_A 1lwr_A Length = 209 | Back alignment and structure |
|---|
Score = 76.4 bits (188), Expect = 3e-16
Identities = 32/186 (17%), Positives = 53/186 (28%), Gaps = 41/186 (22%)
Query: 313 VVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEE 372
P P+ + + + P GG PI
Sbjct: 4 AQADTPSSPSIDQ--VEPYSSTAQVQFDEPEATGGVPILK-------------------- 41
Query: 373 FTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLV 432
+ G W E S +G + + +T Y + +
Sbjct: 42 YKAEWRAVGEEVWHSKWYDA-KEASMEGIVTIVGLKPETTYA------------VRLAAL 88
Query: 433 NTVG----SDSASCKVYVVDKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVE 488
N G S ++ K V +PS P+ S ++ DDGGSPI +Y+V
Sbjct: 89 NGKGLGEISAASEFKTQPVREPSAPKLEG-QMGEDGNSIKVNLIKQ-DDGGSPIRHYLVR 146
Query: 489 KYESAT 494
++
Sbjct: 147 YRALSS 152
|
| >2vkw_A Neural cell adhesion molecule 1,140 kDa isoform; adhesion receptor; 2.3A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 2vkx_A 1lwr_A Length = 209 | Back alignment and structure |
|---|
Score = 62.1 bits (151), Expect = 3e-11
Identities = 11/50 (22%), Positives = 15/50 (30%), Gaps = 2/50 (4%)
Query: 446 VVDKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATG 495
D PS P + + + + P GG PI Y E
Sbjct: 5 QADTPSSPSID--QVEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEE 52
|
| >2vkw_A Neural cell adhesion molecule 1,140 kDa isoform; adhesion receptor; 2.3A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 2vkx_A 1lwr_A Length = 209 | Back alignment and structure |
|---|
Score = 43.3 bits (102), Expect = 6e-05
Identities = 15/130 (11%), Positives = 26/130 (20%), Gaps = 47/130 (36%)
Query: 223 TASAHVTGTEFTDNNVHEGKAYEYRVSAVNAAGTEKPKISLDALIGKRIKEFVTSTTASL 282
A T + Y R++A+N G + T +
Sbjct: 60 DAKEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEI------------SAASEFKTQPV 107
Query: 283 NIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPP 342
+ S+ ++
Sbjct: 108 ----------------------------------REPSAPKLEGQMGEDGNSIKVNLIKQ 133
Query: 343 VDDGGTPITG 352
DDGG+PI
Sbjct: 134 -DDGGSPIRH 142
|
| >1x5y_A Myosin binding protein C, fast-type; fast MYBP-C, fibronectin type III domain containing protein, cytoskeleton, muscle contraction; NMR {Mus musculus} SCOP: b.1.2.1 Length = 111 | Back alignment and structure |
|---|
Score = 116 bits (292), Expect = 2e-31
Identities = 28/102 (27%), Positives = 37/102 (36%), Gaps = 1/102 (0%)
Query: 14 PGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDK-TGNWEKAVVVPAGETSC 72
P L D L+W PP G I GY+VE + + W A P
Sbjct: 9 TSAPQHLTVEDVTDTTTTLKWRPPDRIGAGGIDGYLVEYCLEGSEEWVPANKEPVERCGF 68
Query: 73 TVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAP 114
TV L G F+V VN AG E + P+ + +
Sbjct: 69 TVKDLPTGARILFRVVGVNIAGRSEPATLLQPVTIRESGPSS 110
|
| >1x5y_A Myosin binding protein C, fast-type; fast MYBP-C, fibronectin type III domain containing protein, cytoskeleton, muscle contraction; NMR {Mus musculus} SCOP: b.1.2.1 Length = 111 | Back alignment and structure |
|---|
Score = 61.2 bits (149), Expect = 8e-12
Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Query: 450 PSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATG 495
S PQ V D+T + +L W+PP G I Y+VE +
Sbjct: 9 TSAPQHL-TVEDVTDTTTTLKWRPPDRIGAGGIDGYLVEYCLEGSE 53
|
| >1x5y_A Myosin binding protein C, fast-type; fast MYBP-C, fibronectin type III domain containing protein, cytoskeleton, muscle contraction; NMR {Mus musculus} SCOP: b.1.2.1 Length = 111 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 3e-06
Identities = 9/35 (25%), Positives = 13/35 (37%), Gaps = 1/35 (2%)
Query: 318 PGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITG 352
P VT + ++ W+PP G I G
Sbjct: 9 TSAPQHLT-VEDVTDTTTTLKWRPPDRIGAGGIDG 42
|
| >2ibg_A CG9211-PA, GH03927P; IHOG, fibronectin type III, protein binding; 2.20A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1 PDB: 2ibb_A Length = 214 | Back alignment and structure |
|---|
Score = 119 bits (300), Expect = 2e-31
Identities = 25/105 (23%), Positives = 40/105 (38%), Gaps = 2/105 (1%)
Query: 8 KNPFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDK--TGNWEKAVVV 65
D P LE ++ + V L W+ ITGY + G + KA +
Sbjct: 110 GAALDPMPVPELLEIEEYSETAVVLHWSLASDADEHLITGYYAYYRPSSSAGEYFKATIE 169
Query: 66 PAGETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPK 110
A S + L Y+F++++ +AA E S +PK
Sbjct: 170 GAHARSFKIAPLETATMYEFKLQSFSAASASEFSALKQGRTQRPK 214
|
| >2ibg_A CG9211-PA, GH03927P; IHOG, fibronectin type III, protein binding; 2.20A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1 PDB: 2ibb_A Length = 214 | Back alignment and structure |
|---|
Score = 91.8 bits (228), Expect = 2e-21
Identities = 23/111 (20%), Positives = 39/111 (35%), Gaps = 14/111 (12%)
Query: 14 PGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDK--TGNWEKA--------- 62
PT T + V L+W P + G PI + V+ + NW+
Sbjct: 2 TYPPTPPNVTRLSDESVMLRWMVP-RNDGLPIVIFKVQYRMVGKRKNWQTTNDNIPYGKP 60
Query: 63 --VVVPAGETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKN 111
+ +V L TY+F++ AV + + S +A +P
Sbjct: 61 KWNSELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKESNTSAKFYLQPGA 111
|
| >2ibg_A CG9211-PA, GH03927P; IHOG, fibronectin type III, protein binding; 2.20A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1 PDB: 2ibb_A Length = 214 | Back alignment and structure |
|---|
Score = 71.4 bits (175), Expect = 2e-14
Identities = 29/187 (15%), Positives = 51/187 (27%), Gaps = 37/187 (19%)
Query: 318 PGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITV 377
PP P + T ++ ESV + W P +DG PI F +
Sbjct: 2 TYPP-TPPNVTRLSDESVMLRWMVPRNDGL-PIVI--------------------FKV-- 37
Query: 378 PFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQL--VNTV 435
W D + K +Y ++ V +
Sbjct: 38 -QYRMVGKRKNWQTTNDNIPYGKPKWNSELGKSFTASVTDLKPQH---TYRFRILAVYSN 93
Query: 436 G----SDSASCKVYVVDKPSPPQGP---LDVSDITPESCSLSWKPPLDDGGSPITNYVVE 488
S++++ P L++ + + + L W D IT Y
Sbjct: 94 NDNKESNTSAKFYLQPGAALDPMPVPELLEIEEYSETAVVLHWSLASDADEHLITGYYAY 153
Query: 489 KYESATG 495
S++
Sbjct: 154 YRPSSSA 160
|
| >2ibg_A CG9211-PA, GH03927P; IHOG, fibronectin type III, protein binding; 2.20A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1 PDB: 2ibb_A Length = 214 | Back alignment and structure |
|---|
Score = 51.3 bits (123), Expect = 1e-07
Identities = 16/132 (12%), Positives = 29/132 (21%), Gaps = 42/132 (31%)
Query: 221 TATASAHVTGTEFTDNNVHEGKAYEYRVSAVNAAGTEKPKISLDALIGKRIKEFVTSTTA 280
S + ++ Y +R+ AV + K +F A
Sbjct: 60 PKWNSELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKE--------SNTSAKFYLQPGA 111
Query: 281 SLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWK 340
+L+ P + + +V + W
Sbjct: 112 ALDP---------------------------------MPVPELL-EIEEYSETAVVLHWS 137
Query: 341 PPVDDGGTPITG 352
D ITG
Sbjct: 138 LASDADEHLITG 149
|
| >1x5x_A Fibronectin type-III domain containing protein 3A; structural genomics, KIAA0970, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 109 | Back alignment and structure |
|---|
Score = 115 bits (291), Expect = 2e-31
Identities = 21/101 (20%), Positives = 36/101 (35%)
Query: 14 PGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVVVPAGETSCT 73
P P T + LQW+ P Y++EM+++T + + + T
Sbjct: 8 PSMPASPVLTKAGITWLSLQWSKPSGTPSDEGISYILEMEEETSGYGFKPKYDGEDLAYT 67
Query: 74 VPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAP 114
V L Y+F+V A N+ G S+ +
Sbjct: 68 VKNLRRSTKYKFKVIAYNSEGKSNPSEVVEFTTCPDSGPSS 108
|
| >1x5x_A Fibronectin type-III domain containing protein 3A; structural genomics, KIAA0970, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 109 | Back alignment and structure |
|---|
Score = 59.3 bits (144), Expect = 4e-11
Identities = 12/50 (24%), Positives = 19/50 (38%), Gaps = 1/50 (2%)
Query: 446 VVDKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATG 495
PS P P+ ++ SL W P +Y++E E +G
Sbjct: 4 GSSGPSMPASPV-LTKAGITWLSLQWSKPSGTPSDEGISYILEMEEETSG 52
|
| >1x5x_A Fibronectin type-III domain containing protein 3A; structural genomics, KIAA0970, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 109 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 9e-06
Identities = 8/39 (20%), Positives = 11/39 (28%), Gaps = 1/39 (2%)
Query: 314 VVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITG 352
S P P P+ T +S+ W P
Sbjct: 4 GSSGPSMPASPV-LTKAGITWLSLQWSKPSGTPSDEGIS 41
|
| >1x5x_A Fibronectin type-III domain containing protein 3A; structural genomics, KIAA0970, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 109 | Back alignment and structure |
|---|
Score = 38.5 bits (90), Expect = 6e-04
Identities = 8/37 (21%), Positives = 14/37 (37%)
Query: 223 TASAHVTGTEFTDNNVHEGKAYEYRVSAVNAAGTEKP 259
+T N+ Y+++V A N+ G P
Sbjct: 56 KPKYDGEDLAYTVKNLRRSTKYKFKVIAYNSEGKSNP 92
|
| >1x4z_A Biregional cell adhesion molecule-related/DOWN- regulated oncogenes (CDON)binding...; fibronectin type III, FN3; NMR {Mus musculus} SCOP: b.1.2.1 Length = 121 | Back alignment and structure |
|---|
Score = 116 bits (292), Expect = 2e-31
Identities = 34/111 (30%), Positives = 48/111 (43%), Gaps = 4/111 (3%)
Query: 2 DHSVLIKNPFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMK--DKTGNW 59
S P P + + V + W P +GG PI + VE K K G+W
Sbjct: 6 SGSQPDHGRLSPPEAPDRPTISTASETSVYVTWIPR-GNGGFPIQSFRVEYKKLKKVGDW 64
Query: 60 EKAV-VVPAGETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKP 109
A +P S + GL +G +Y+F+VRA+N G E S P+ P V
Sbjct: 65 ILATSAIPPSRLSVEITGLEKGISYKFRVRALNMLGESEPSAPSRPYVVSG 115
|
| >1x4z_A Biregional cell adhesion molecule-related/DOWN- regulated oncogenes (CDON)binding...; fibronectin type III, FN3; NMR {Mus musculus} SCOP: b.1.2.1 Length = 121 | Back alignment and structure |
|---|
Score = 65.1 bits (159), Expect = 4e-13
Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Query: 434 TVGSDSASCKVYVVDKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYES 492
+ GS + + P P P +S + S ++W P +GG PI ++ VE +
Sbjct: 2 SSGSSGSQPDHGRLSPPEAPDRPT-ISTASETSVYVTWIPR-GNGGFPIQSFRVEYKKL 58
|
| >1x4z_A Biregional cell adhesion molecule-related/DOWN- regulated oncogenes (CDON)binding...; fibronectin type III, FN3; NMR {Mus musculus} SCOP: b.1.2.1 Length = 121 | Back alignment and structure |
|---|
Score = 44.7 bits (106), Expect = 5e-06
Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
Query: 306 DMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITG 352
+ + +S P P P +T + SV ++W P +GG PI
Sbjct: 6 SGSQPDHGRLSPPEAPDRPT-ISTASETSVYVTWIPR-GNGGFPIQS 50
|
| >2yuw_A Myosin binding protein C, SLOW type; fibronectin III domain, SLOW- type protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110 | Back alignment and structure |
|---|
Score = 115 bits (290), Expect = 4e-31
Identities = 30/101 (29%), Positives = 43/101 (42%), Gaps = 1/101 (0%)
Query: 10 PFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDK-TGNWEKAVVVPAG 68
PT L V ++W PP G + + GYV+E + T +W A
Sbjct: 4 GSSGTSPPTLLTVDSVTDTTVTMRWRPPDHIGAAGLDGYVLEYCFEGTEDWIVANKDLID 63
Query: 69 ETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKP 109
+T T+ GL +V+AVNAAG E + PI+ K
Sbjct: 64 KTKFTITGLPTDAKIFVRVKAVNAAGASEPKYYSQPILVKE 104
|
| >2yuw_A Myosin binding protein C, SLOW type; fibronectin III domain, SLOW- type protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110 | Back alignment and structure |
|---|
Score = 59.7 bits (145), Expect = 2e-11
Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 450 PSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATG 495
SPP L V +T + ++ W+PP G + + YV+E T
Sbjct: 8 TSPP-TLLTVDSVTDTTVTMRWRPPDHIGAAGLDGYVLEYCFEGTE 52
|
| >2yuw_A Myosin binding protein C, SLOW type; fibronectin III domain, SLOW- type protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110 | Back alignment and structure |
|---|
Score = 44.7 bits (106), Expect = 4e-06
Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 318 PGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITG 352
PPT +VT +V+M W+PP G + G
Sbjct: 8 TSPPTLLT-VDSVTDTTVTMRWRPPDHIGAAGLDG 41
|
| >1wis_A KIAA1514 protein; FNIII domain, sidekick-2, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 124 | Back alignment and structure |
|---|
Score = 114 bits (288), Expect = 1e-30
Identities = 29/113 (25%), Positives = 46/113 (40%), Gaps = 7/113 (6%)
Query: 3 HSVLIKNPFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKT----GN 58
++ P + PG PT+L ++ V LQ+ P DG + I+ ++VE +
Sbjct: 7 GTISSGVPPELPGPPTNLGISNIGPRSVTLQFRPG-YDGKTSISRWLVEAQVGVVGEGEE 65
Query: 59 WEKA--VVVPAGETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKP 109
W + S VP L Y F++R VN G S+P+ I
Sbjct: 66 WLLIHQLSNEPDARSMEVPDLNPFTCYSFRMRQVNIVGTSPPSQPSRKIQTLQ 118
|
| >1wis_A KIAA1514 protein; FNIII domain, sidekick-2, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 124 | Back alignment and structure |
|---|
Score = 62.4 bits (152), Expect = 4e-12
Identities = 19/82 (23%), Positives = 36/82 (43%), Gaps = 5/82 (6%)
Query: 436 GSDSASCKVYV---VDKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYES 492
GS +S + + P PP +S+I P S +L ++P DG + I+ ++VE
Sbjct: 1 GSSGSSGTISSGVPPELPGPPTNL-GISNIGPRSVTLQFRPG-YDGKTSISRWLVEAQVG 58
Query: 493 ATGVSDLFISKSEVKTGSLMTS 514
G + ++ ++ S
Sbjct: 59 VVGEGEEWLLIHQLSNEPDARS 80
|
| >1wis_A KIAA1514 protein; FNIII domain, sidekick-2, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 124 | Back alignment and structure |
|---|
Score = 41.2 bits (97), Expect = 9e-05
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 313 VVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITG 352
V PGPPT + + P SV++ ++P DG T I+
Sbjct: 13 VPPELPGPPTNLG-ISNIGPRSVTLQFRPG-YDGKTSISR 50
|
| >1x3d_A Fibronectin type-III domain containing protein 3A; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 118 | Back alignment and structure |
|---|
Score = 113 bits (284), Expect = 3e-30
Identities = 24/108 (22%), Positives = 39/108 (36%), Gaps = 1/108 (0%)
Query: 2 DHSVLIKNPFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEK 61
+ + EP P + K+ + LQW P SD GS I +V+E + GN E
Sbjct: 6 SGAEIFTTLSCEPDIPNPPRIANRTKNSLTLQWKAP-SDNGSKIQNFVLEWDEGKGNGEF 64
Query: 62 AVVVPAGETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKP 109
+ + L +F++ A N G S+ +
Sbjct: 65 CQCYMGSQKQFKITKLSPAMGCKFRLSARNDYGTSGFSEEVLYYTSGC 112
|
| >1x3d_A Fibronectin type-III domain containing protein 3A; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 118 | Back alignment and structure |
|---|
Score = 65.5 bits (160), Expect = 2e-13
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 436 GSDSASCKVYVVDKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYES 492
GS A + +P P P +++ T S +L WK P D GS I N+V+E E
Sbjct: 4 GSSGAEIFTTLSCEPDIPNPPR-IANRTKNSLTLQWKAP-SDNGSKIQNFVLEWDEG 58
|
| >1x3d_A Fibronectin type-III domain containing protein 3A; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 118 | Back alignment and structure |
|---|
Score = 45.9 bits (109), Expect = 2e-06
Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
Query: 304 GIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITG 352
G A+I + +P P P T S+++ WK P D G+ I
Sbjct: 4 GSSGAEIFTTLSCEPDIPNPPR-IANRTKNSLTLQWKAP-SDNGSKIQN 50
|
| >2yux_A Myosin-binding protein C, SLOW-type; fibronectin III domain, structural genomics., NPPSFA; NMR {Homo sapiens} Length = 120 | Back alignment and structure |
|---|
Score = 112 bits (283), Expect = 5e-30
Identities = 32/101 (31%), Positives = 48/101 (47%), Gaps = 2/101 (1%)
Query: 12 DEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDK-TGNWEKAVVVPAGET 70
D PG P ++ D ++V L WTPP DG + ITGY ++ DK + W + T
Sbjct: 16 DRPGPPQIVKIEDVWGENVALTWTPPKDDGNAAITGYTIQKADKKSMEWFTVIEHYHR-T 74
Query: 71 SCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKN 111
S T+ L+ G Y F+V + N G E + T ++
Sbjct: 75 SATITELVIGNEYYFRVFSENMCGLSEDATMTKESAVIARD 115
|
| >2yux_A Myosin-binding protein C, SLOW-type; fibronectin III domain, structural genomics., NPPSFA; NMR {Homo sapiens} Length = 120 | Back alignment and structure |
|---|
Score = 82.4 bits (204), Expect = 3e-19
Identities = 22/60 (36%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 436 GSDSASCKVYVVDKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATG 495
GS AS + ++D+P PPQ + + D+ E+ +L+W PP DDG + IT Y ++K + +
Sbjct: 4 GSSGASIDIQIIDRPGPPQ-IVKIEDVWGENVALTWTPPKDDGNAAITGYTIQKADKKSM 62
|
| >2yux_A Myosin-binding protein C, SLOW-type; fibronectin III domain, structural genomics., NPPSFA; NMR {Homo sapiens} Length = 120 | Back alignment and structure |
|---|
Score = 58.1 bits (141), Expect = 9e-11
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 303 YGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITG 352
G A I++ ++ +PGPP V E+V+++W PP DDG ITG
Sbjct: 3 SGSSGASIDIQIIDRPGPPQIVK-IEDVWGENVALTWTPPKDDGNAAITG 51
|
| >3lpw_A A77-A78 domain from titin; intracellular FNIII-tandem, structural protein; 1.65A {Homo sapiens} Length = 197 | Back alignment and structure |
|---|
Score = 114 bits (287), Expect = 1e-29
Identities = 38/104 (36%), Positives = 51/104 (49%)
Query: 12 DEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVVVPAGETS 71
D PG P DL+ + K V L W PP+ DGGS I Y+VE ++ T V +TS
Sbjct: 4 DTPGPPQDLKVKEVTKTSVTLTWDPPLLDGGSKIKNYIVEKRESTRKAYSTVATNCHKTS 63
Query: 72 CTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAPR 115
V L EG +Y F+V A N G G ++ + A + L P
Sbjct: 64 WKVDQLQEGCSYYFRVLAENEYGIGLPAETAESVKASERPLPPG 107
|
| >3lpw_A A77-A78 domain from titin; intracellular FNIII-tandem, structural protein; 1.65A {Homo sapiens} Length = 197 | Back alignment and structure |
|---|
Score = 113 bits (285), Expect = 2e-29
Identities = 36/106 (33%), Positives = 52/106 (49%), Gaps = 3/106 (2%)
Query: 4 SVLIKNPFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDK-TGNWEKA 62
+ + P P + D ++ V L W P DGGS I GY+VEM+ K + W
Sbjct: 93 TAESVKASERPLPPGKITLMDVTRNSVSLSWEKPEHDGGSRILGYIVEMQTKGSDKWATC 152
Query: 63 VVVPAGETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAK 108
V T T+ GLI+GE Y F+V A N G + + + P++AK
Sbjct: 153 ATVKV--TEATITGLIQGEEYSFRVSAQNEKGISDPRQLSVPVIAK 196
|
| >3lpw_A A77-A78 domain from titin; intracellular FNIII-tandem, structural protein; 1.65A {Homo sapiens} Length = 197 | Back alignment and structure |
|---|
Score = 78.2 bits (193), Expect = 6e-17
Identities = 42/187 (22%), Positives = 68/187 (36%), Gaps = 46/187 (24%)
Query: 314 VVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEF 373
+ PGPP VT SV+++W PP+ DGG+ I +
Sbjct: 2 AMDTPGPPQDLK-VKEVTKTSVTLTWDPPLLDGGSKIKN--------------------Y 40
Query: 374 TITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQL-- 431
+ R ++ T+ ++T ++ + SY ++
Sbjct: 41 IVEK----RESTRKAYS------------TVATNCHKTSWKVDQLQEGC---SYYFRVLA 81
Query: 432 VNTVGSDSASCKVYVV---DKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVE 488
N G + V ++P PP + D+T S SLSW+ P DGGS I Y+VE
Sbjct: 82 ENEYGIGLPAETAESVKASERPLPPGKIT-LMDVTRNSVSLSWEKPEHDGGSRILGYIVE 140
Query: 489 KYESATG 495
+
Sbjct: 141 MQTKGSD 147
|
| >3lpw_A A77-A78 domain from titin; intracellular FNIII-tandem, structural protein; 1.65A {Homo sapiens} Length = 197 | Back alignment and structure |
|---|
Score = 55.4 bits (134), Expect = 4e-09
Identities = 31/130 (23%), Positives = 43/130 (33%), Gaps = 47/130 (36%)
Query: 223 TASAHVTGTEFTDNNVHEGKAYEYRVSAVNAAGTEKPKISLDALIGKRIKEFVTSTTASL 282
T + + T + + + EG +Y +RV A N G P + E S AS
Sbjct: 54 TVATNCHKTSWKVDQLQEGCSYYFRVLAENEYGIGLP--A----------ETAESVKAS- 100
Query: 283 NIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPP 342
+P PP VT SVS+SW+ P
Sbjct: 101 ---------------------------------ERPLPPGKIT-LMDVTRNSVSLSWEKP 126
Query: 343 VDDGGTPITG 352
DGG+ I G
Sbjct: 127 EHDGGSRILG 136
|
| >1wf5_A Sidekick 2 protein; FNIII domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 121 | Back alignment and structure |
|---|
Score = 111 bits (279), Expect = 2e-29
Identities = 34/101 (33%), Positives = 49/101 (48%), Gaps = 4/101 (3%)
Query: 12 DEPGKPTDLEAT--DWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAV-VVPAG 68
P P AT ++ ++L WT P DG SP+ Y++EM + W + V
Sbjct: 16 QLPHAPEHPVATLSTVERRAINLTWTKP-FDGNSPLIRYILEMSENNAPWTVLLASVDPK 74
Query: 69 ETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKP 109
TS TV GL+ +YQF++ AVN G G+ SK T +
Sbjct: 75 ATSVTVKGLVPARSYQFRLCAVNDVGKGQFSKDTERVSLPE 115
|
| >1wf5_A Sidekick 2 protein; FNIII domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 121 | Back alignment and structure |
|---|
Score = 73.5 bits (181), Expect = 4e-16
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 434 TVGSDSASCKVYVVDKPSPPQGP-LDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYES 492
+ GS S + V P P+ P +S + + +L+W P DG SP+ Y++E E+
Sbjct: 2 SSGSSGRSAHLRVRQLPHAPEHPVATLSTVERRAINLTWTKP-FDGNSPLIRYILEMSEN 60
|
| >1wf5_A Sidekick 2 protein; FNIII domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 121 | Back alignment and structure |
|---|
Score = 49.3 bits (118), Expect = 1e-07
Identities = 12/51 (23%), Positives = 21/51 (41%), Gaps = 2/51 (3%)
Query: 303 YGIDMADIEVVVVSKPGPPTGP-IDYTTVTPESVSMSWKPPVDDGGTPITG 352
G + V P P P +TV +++++W P DG +P+
Sbjct: 3 SGSSGRSAHLRVRQLPHAPEHPVATLSTVERRAINLTWTKP-FDGNSPLIR 52
|
| >2crz_A Fibronectin type-III domain containing protein 3A; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 110 | Back alignment and structure |
|---|
Score = 109 bits (275), Expect = 4e-29
Identities = 34/101 (33%), Positives = 45/101 (44%), Gaps = 2/101 (1%)
Query: 10 PFDEPGKPTDLEATDWDKDH-VDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVVVPAG 68
PG K + L+W PP+ DGGSPI+ Y VEM + + V
Sbjct: 5 SSGPPGPCLPPRLQGRPKAKEIQLRWGPPLVDGGSPISCYSVEMSPIEKDEPR-EVYQGS 63
Query: 69 ETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKP 109
E CTV L+ G+TY F++RA N G G S+ A
Sbjct: 64 EVECTVSSLLPGKTYSFRLRAANKMGFGPFSEKCDITTAPG 104
|
| >2crz_A Fibronectin type-III domain containing protein 3A; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 110 | Back alignment and structure |
|---|
Score = 62.7 bits (153), Expect = 2e-12
Identities = 17/46 (36%), Positives = 19/46 (41%)
Query: 450 PSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATG 495
P P P + L W PPL DGGSPI+ Y VE
Sbjct: 9 PGPCLPPRLQGRPKAKEIQLRWGPPLVDGGSPISCYSVEMSPIEKD 54
|
| >2crz_A Fibronectin type-III domain containing protein 3A; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 110 | Back alignment and structure |
|---|
Score = 49.3 bits (118), Expect = 1e-07
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 318 PGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITG 352
PGP P + + + W PP+ DGG+PI+
Sbjct: 9 PGPCLPPRLQGRPKAKEIQLRWGPPLVDGGSPISC 43
|
| >3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570 | Back alignment and structure |
|---|
Score = 118 bits (298), Expect = 1e-28
Identities = 65/441 (14%), Positives = 126/441 (28%), Gaps = 96/441 (21%)
Query: 86 QVRAVNAAGPGEASKPTAPIVAKPKNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYT 145
A N G + +A + + P D V + G+S +F T
Sbjct: 173 NCSASNPLG---TASSSAKLTLSEHEVPPFFDLK-PVSVDLALGESGTFKCH------VT 222
Query: 146 KSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFCSR 205
+ + W+ + + + GG + ++ L + ++
Sbjct: 223 GTA------------------PIKIT--WAKDNREIRPGGNYKMTLVENTATLTVLKVTK 262
Query: 206 SDTGHYSLTLENNLGTATASAHVT-------GTEFTDN-NVHEGKAYEYRVSAVNAAGTE 257
D G Y+ N G + SA + + + V + + Y G+
Sbjct: 263 GDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKI---GGSP 319
Query: 258 KPKIS--LDA---LIGKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEV 312
+ K+ D + + + A L + N +DSG Y EA N G + +
Sbjct: 320 EIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSL 379
Query: 313 VVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEE 372
V P + L G +
Sbjct: 380 KVKE------------------------------------PPVFRKKP--HPVETLKGAD 401
Query: 373 FTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLV 432
+ G P W + E+ + K + T + A D G Y +
Sbjct: 402 VHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSA-DIGEYQCKAS 460
Query: 433 NTVGSDSASCKVYVVDKPSPPQGPLDVS-----DITPESCSLSWKPPLD-----DGGSPI 482
N VGSD+ + + P + D+S ++ + ++ P+ D G +
Sbjct: 461 NDVGSDTCVGSITLKAPPRFVKKLSDISTVVGEEVQLQ-ATIEGAEPISVAWFKDKGEIV 519
Query: 483 TNYVVEKYESATGVSDLFISK 503
+ ++ L S+
Sbjct: 520 RESDNIWISYSENIATLQFSR 540
|
| >3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570 | Back alignment and structure |
|---|
Score = 109 bits (274), Expect = 1e-25
Identities = 57/354 (16%), Positives = 99/354 (27%), Gaps = 63/354 (17%)
Query: 174 WSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVT---- 229
W + +Q + L I SD G Y+ EN++G +SA +
Sbjct: 39 WYKEHTKLRSAPAYKMQFKNNVASLVINKVDHSDVGEYTCKAENSVGAVASSAVLVIKER 98
Query: 230 ------GTEFTDNNVHEGKAYEYRVSAVNAAGTEKPKIS--LDALI---GKRIKEFVTST 278
+ D + G + G+E ++S D + ++
Sbjct: 99 KLPPSFARKLKDVHETLGFPVAFECRIN---GSEPLQVSWYKDGELLKDDANLQTSFIHN 155
Query: 279 TASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMS 338
A+L I + + G Y A N G + ++ + PP
Sbjct: 156 VATLQILQTDQSHVGQYNCSASNPLGTASSSAKLTLSEHEVPPF---------------- 199
Query: 339 WKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSP 398
P + + GE T +G W + E+ P
Sbjct: 200 -----------FDLKPV--------SVDLALGESGTFKCHVTGTAPIKITWAKDNREIRP 240
Query: 399 DGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQGPLD 458
G K EN D+G YT N G DS S ++ V + P +
Sbjct: 241 GGNYKMTLVENTATLTVLKV-TKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEP 299
Query: 459 VSDITPES-----CSLSWKPPLD----DGGSPITNYVVEKYESATGVSDLFISK 503
+ + C + P + + I + V+ L +
Sbjct: 300 SRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYN 353
|
| >3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570 | Back alignment and structure |
|---|
Score = 104 bits (260), Expect = 7e-24
Identities = 54/289 (18%), Positives = 98/289 (33%), Gaps = 57/289 (19%)
Query: 174 WSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVT---- 229
W + Q + + +S VL++ S D+G Y+ N G+A++S +
Sbjct: 325 WYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEP 384
Query: 230 ---GTEFTDNNVHEGKAYEYRVS-AVNAAGTEKPKIS-----LDALIGKRIKEFVTSTTA 280
+ +G V GT ++S + GK+ K +
Sbjct: 385 PVFRKKPHPVETLKGA----DVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLT 440
Query: 281 SLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWK 340
S++I N D G Y+ +A ND G D + + +
Sbjct: 441 SIHILNVDSADIGEYQCKASNDVGSDTCVGSITLKA------------------------ 476
Query: 341 PPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDG 400
P+ L D++ + GEE + G + W + E+ +
Sbjct: 477 ------------PPRFVKKL--SDISTVVGEEVQLQATIEGAEPISVAWFKDKGEIVRES 522
Query: 401 -RIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVD 448
I SEN + A+ A ++G YT Q+ N G+ + V++
Sbjct: 523 DNIWISYSENIATLQFSRAEPA-NAGKYTCQIKNEAGTQECFATLSVLE 570
|
| >3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570 | Back alignment and structure |
|---|
Score = 61.0 bits (148), Expect = 4e-10
Identities = 20/102 (19%), Positives = 36/102 (35%), Gaps = 3/102 (2%)
Query: 353 APKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTI 412
P L + GE T+ G P+ W ++ K + N
Sbjct: 5 PPYFIEPLE--HVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQFKNNVAS 62
Query: 413 YRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQ 454
+D G YT + N+VG+ ++S + + ++ PP
Sbjct: 63 LVINKVDH-SDVGEYTCKAENSVGAVASSAVLVIKERKLPPS 103
|
| >2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 114 | Back alignment and structure |
|---|
Score = 108 bits (271), Expect = 2e-28
Identities = 32/110 (29%), Positives = 48/110 (43%), Gaps = 3/110 (2%)
Query: 347 GTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFET 406
G+ + P+I D V AGE + +G T W ++ +K E
Sbjct: 1 GSSGSSGPQIIQFP--EDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVEN 58
Query: 407 SENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQGP 456
SEN + +A++ G YT+ + N +GS A + VVDKP PP G
Sbjct: 59 SENGSKLTILAARQE-HCGCYTLLVENKLGSRQAQVNLTVVDKPDPPAGT 107
|
| >2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 114 | Back alignment and structure |
|---|
Score = 60.8 bits (148), Expect = 1e-11
Identities = 15/57 (26%), Positives = 26/57 (45%)
Query: 268 GKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGP 324
+ +K + + L I + ++ G Y + +N G A + + VV KP PP G
Sbjct: 51 SEHMKVENSENGSKLTILAARQEHCGCYTLLVENKLGSRQAQVNLTVVDKPDPPAGT 107
|
| >2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 114 | Back alignment and structure |
|---|
Score = 54.6 bits (132), Expect = 1e-09
Identities = 23/123 (18%), Positives = 42/123 (34%), Gaps = 27/123 (21%)
Query: 107 AKPKNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLS 166
+ P+I + D K++AG+S K T +
Sbjct: 1 GSSGSSGPQIIQ-FPEDQKVRAGESVELFGK------VTGTQ------------------ 35
Query: 167 EPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASA 226
W + Q V+ +++ + L I + G Y+L +EN LG+ A
Sbjct: 36 PITCT--WMKFRKQIQESEHMKVENSENGSKLTILAARQEHCGCYTLLVENKLGSRQAQV 93
Query: 227 HVT 229
++T
Sbjct: 94 NLT 96
|
| >2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317 | Back alignment and structure |
|---|
Score = 113 bits (285), Expect = 3e-28
Identities = 48/299 (16%), Positives = 94/299 (31%), Gaps = 50/299 (16%)
Query: 174 WSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVT---- 229
W + + + + L I S+ D G Y + L+++ G + +
Sbjct: 41 WYKDEREISVDEK--HDFKDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEAF 98
Query: 230 --------------GTEFTDNNVHEGKAYEYRVSAVNAAGTEKPKIS-------LDALIG 268
T+ + EG V+ E K++ +
Sbjct: 99 KELMMEVCKKIALSATDLKIQSTAEGIQLYSFVTY----YVEDLKVNWSHNGSAIRY--S 152
Query: 269 KRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYT 328
R+K VT L I D G Y +E + +++ + ++
Sbjct: 153 DRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQA---YDEAYAEFQ 209
Query: 329 TVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPI 388
+ +++ + V + G P +T+ G+ +T G P P
Sbjct: 210 RLKQAAIAEKNRARV------LGGLPD--------VVTIQEGKALNLTCNVWGDPPPEVS 255
Query: 389 WTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVV 447
W N ++ D + +T Y + DSG Y + + N GS+++ V V
Sbjct: 256 WLKNEKALASDDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVF 314
|
| >2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317 | Back alignment and structure |
|---|
Score = 75.3 bits (185), Expect = 4e-15
Identities = 24/196 (12%), Positives = 57/196 (29%), Gaps = 32/196 (16%)
Query: 279 TASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMS 338
+L I +KD+GIY++ K+D G D + +++V + ++ +
Sbjct: 60 ICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEAFKELMMEVCKKIALSATDL--- 116
Query: 339 WKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSP 398
K G + + W+ NG +
Sbjct: 117 -KIQSTAEGIQLY------------------------SFVTYYVEDLKVNWSHNGSAIRY 151
Query: 399 DGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQGPLD 458
R+K + Q + D G Y ++L + + + + + +
Sbjct: 152 SDRVKTGVTGEQIWLQINEPTP-NDKGKYVMELFDGKTGHQKTVDLSGQ---AYDEAYAE 207
Query: 459 VSDITPESCSLSWKPP 474
+ + + +
Sbjct: 208 FQRLKQAAIAEKNRAR 223
|
| >2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317 | Back alignment and structure |
|---|
Score = 62.6 bits (152), Expect = 6e-11
Identities = 21/115 (18%), Positives = 35/115 (30%), Gaps = 7/115 (6%)
Query: 353 APKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPI-WTVNGDEVSPDGRIKFETSENQT 411
P LS V + + K T I W + E+S D + F+
Sbjct: 7 GPHFVEYLSW---EVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTL 63
Query: 412 IYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQGPLDVSDITPES 466
+ S K D+G Y + L + G D + K+ ++
Sbjct: 64 LITEFSKK---DAGIYEVILKDDRGKDKSRLKLVDEAFKELMMEVCKKIALSATD 115
|
| >1uey_A KIAA0343 protein; immunoglobulin-like beta-sandwich fold, NG-CAM related cell adhesion molecule, fibronectin type III domain, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 127 | Back alignment and structure |
|---|
Score = 107 bits (270), Expect = 3e-28
Identities = 34/104 (32%), Positives = 45/104 (43%), Gaps = 5/104 (4%)
Query: 9 NPFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDK---TGNWEKAVVV 65
+D P P DLE TD V L WTP D SPIT +++E +D G W V
Sbjct: 12 PVYDVPNPPFDLELTDQLDKSVQLSWTPG-DDNNSPITKFIIEYEDAMHKPGLWHHQTEV 70
Query: 66 PAGETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKP 109
G + L Y F+V AVN+ G S+ + + K
Sbjct: 71 S-GTQTTAQLNLSPYVNYSFRVMAVNSIGKSLPSEASEQYLTKA 113
|
| >1uey_A KIAA0343 protein; immunoglobulin-like beta-sandwich fold, NG-CAM related cell adhesion molecule, fibronectin type III domain, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 127 | Back alignment and structure |
|---|
Score = 64.7 bits (158), Expect = 6e-13
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Query: 435 VGSDSASCKVYVVDKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESAT 494
S V D P+PP ++D +S LSW P DD SPIT +++E ++
Sbjct: 2 SSGSSGPTPAPVYDVPNPPFDLE-LTDQLDKSVQLSWTPG-DDNNSPITKFIIEYEDAMH 59
|
| >1uey_A KIAA0343 protein; immunoglobulin-like beta-sandwich fold, NG-CAM related cell adhesion molecule, fibronectin type III domain, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 127 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 1e-05
Identities = 15/49 (30%), Positives = 18/49 (36%), Gaps = 2/49 (4%)
Query: 304 GIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITG 352
V P PP T +SV +SW P DD +PIT
Sbjct: 3 SGSSGPTPAPVYDVPNPPFDLE-LTDQLDKSVQLSWTPG-DDNNSPITK 49
|
| >1uem_A KIAA1568 protein; immunoglobulin-like beta-sandwich fold, fibronectin type III, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 117 | Back alignment and structure |
|---|
Score = 107 bits (269), Expect = 4e-28
Identities = 31/103 (30%), Positives = 47/103 (45%), Gaps = 2/103 (1%)
Query: 9 NPFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTG-NWEKAVVVPA 67
+ D PG P+ + TD K+ V L W P + G P + Y++E ++ N + V
Sbjct: 11 DLSDLPGPPSKPQVTDVTKNSVTLSWQPG-TPGTLPASAYIIEAFSQSVSNSWQTVANHV 69
Query: 68 GETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPK 110
T TV GL Y F VRA+N G + S + P+ +
Sbjct: 70 KTTLYTVRGLRPNTIYLFMVRAINPQGLSDPSPMSDPVRTQDS 112
|
| >1uem_A KIAA1568 protein; immunoglobulin-like beta-sandwich fold, fibronectin type III, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 117 | Back alignment and structure |
|---|
Score = 70.1 bits (172), Expect = 7e-15
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 437 SDSASCKVYVVDKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATG 495
S S+ + D P PP P V+D+T S +LSW+P G P + Y++E + +
Sbjct: 3 SGSSGKNYDLSDLPGPPSKPQ-VTDVTKNSVTLSWQPG-TPGTLPASAYIIEAFSQSVS 59
|
| >1uem_A KIAA1568 protein; immunoglobulin-like beta-sandwich fold, fibronectin type III, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 117 | Back alignment and structure |
|---|
Score = 46.6 bits (111), Expect = 1e-06
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 308 ADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITG 352
+ + PGPP+ P T VT SV++SW+P G P +
Sbjct: 6 SGKNYDLSDLPGPPSKPQ-VTDVTKNSVTLSWQPG-TPGTLPASA 48
|
| >2kbg_A N-CAM 2, neural cell adhesion molecule 2; fibronectin type III module, beta-sheet sandwich, cell membrane, glycoprotein, immunoglobulin domain; NMR {Homo sapiens} Length = 114 | Back alignment and structure |
|---|
Score = 106 bits (267), Expect = 6e-28
Identities = 23/108 (21%), Positives = 38/108 (35%), Gaps = 3/108 (2%)
Query: 8 KNPFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDK-TGNWEKAVVVP 66
+ EP P+ + L T DGG+PI Y+V+ + K + V
Sbjct: 3 EASMREPSPPS-IHGQPSSGKSFKLSITKQ-DDGGAPILEYIVKYRSKDKEDQWLEKKVQ 60
Query: 67 AGETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAP 114
+ + L Y+ Q+ A N G E + + KP +
Sbjct: 61 GNKDHIILEHLQWTMGYEVQITAANRLGYSEPTVYEFSMPPKPNIIKD 108
|
| >2kbg_A N-CAM 2, neural cell adhesion molecule 2; fibronectin type III module, beta-sheet sandwich, cell membrane, glycoprotein, immunoglobulin domain; NMR {Homo sapiens} Length = 114 | Back alignment and structure |
|---|
Score = 53.7 bits (129), Expect = 3e-09
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Query: 446 VVDKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATG 495
+ +PSPP + + +S LS DDGG+PI Y+V+
Sbjct: 5 SMREPSPPS--IHGQPSSGKSFKLSITKQ-DDGGAPILEYIVKYRSKDKE 51
|
| >2kbg_A N-CAM 2, neural cell adhesion molecule 2; fibronectin type III module, beta-sheet sandwich, cell membrane, glycoprotein, immunoglobulin domain; NMR {Homo sapiens} Length = 114 | Back alignment and structure |
|---|
Score = 41.0 bits (96), Expect = 9e-05
Identities = 12/40 (30%), Positives = 18/40 (45%), Gaps = 3/40 (7%)
Query: 313 VVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITG 352
+ +P PP+ I + +S +S DDGG PI
Sbjct: 4 ASMREPSPPS--IHGQPSSGKSFKLSITKQ-DDGGAPILE 40
|
| >2dju_A Receptor-type tyrosine-protein phosphatase F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 106 | Back alignment and structure |
|---|
Score = 103 bits (260), Expect = 5e-27
Identities = 24/98 (24%), Positives = 35/98 (35%), Gaps = 3/98 (3%)
Query: 12 DEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVVVPAGETS 71
P P DL T+ V L W P+T Y ++ + V T
Sbjct: 6 SGPKPPIDLVVTETTATSVTLTWDSG---NSEPVTYYGIQYRAAGTEGPFQEVDGVATTR 62
Query: 72 CTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKP 109
++ GL Y F+V AVN+ G G S+ +
Sbjct: 63 YSIGGLSPFSEYAFRVLAVNSIGRGPPSEAVRARTGEQ 100
|
| >2dju_A Receptor-type tyrosine-protein phosphatase F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 106 | Back alignment and structure |
|---|
Score = 50.4 bits (121), Expect = 4e-08
Identities = 12/48 (25%), Positives = 21/48 (43%), Gaps = 4/48 (8%)
Query: 448 DKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATG 495
P PP + V++ T S +L+W P+T Y ++ + T
Sbjct: 6 SGPKPPIDLV-VTETTATSVTLTWDSG---NSEPVTYYGIQYRAAGTE 49
|
| >1x5f_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 120 | Back alignment and structure |
|---|
Score = 103 bits (259), Expect = 9e-27
Identities = 25/92 (27%), Positives = 33/92 (35%), Gaps = 1/92 (1%)
Query: 12 DEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDK-TGNWEKAVVVPAGET 70
P P D+ A+ + L W P SD Y V + GE
Sbjct: 16 PLPSAPRDVVASLVSTRFIKLTWRTPASDPHGDNLTYSVFYTKEGIARERVENTSHPGEM 75
Query: 71 SCTVPGLIEGETYQFQVRAVNAAGPGEASKPT 102
T+ L+ Y F+V A N G GE+S P
Sbjct: 76 QVTIQNLMPATVYIFRVMAQNKHGSGESSAPL 107
|
| >1x5f_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 120 | Back alignment and structure |
|---|
Score = 59.7 bits (145), Expect = 3e-11
Identities = 12/60 (20%), Positives = 19/60 (31%), Gaps = 1/60 (1%)
Query: 436 GSDSASCKVYVVDKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATG 495
GS PS P+ + S ++ L+W+ P D Y V +
Sbjct: 4 GSSGEHAPATTGPLPSAPRD-VVASLVSTRFIKLTWRTPASDPHGDNLTYSVFYTKEGIA 62
|
| >1x5f_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 120 | Back alignment and structure |
|---|
Score = 41.6 bits (98), Expect = 7e-05
Identities = 6/35 (17%), Positives = 13/35 (37%), Gaps = 1/35 (2%)
Query: 318 PGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITG 352
P P + + V+ + ++W+ P D
Sbjct: 18 PSAPRDVV-ASLVSTRFIKLTWRTPASDPHGDNLT 51
|
| >2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284 | Back alignment and structure |
|---|
Score = 105 bits (264), Expect = 1e-25
Identities = 44/286 (15%), Positives = 84/286 (29%), Gaps = 55/286 (19%)
Query: 174 WSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVT---- 229
W+ + + + GG + ++ L + ++ D G Y+ N G + SA +
Sbjct: 39 WAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEP 98
Query: 230 ---GTEFTDN-NVHEGKAYEYRVSAVNAAGTEKPKIS-----LDALIGKRIKEFVTSTTA 280
+ + V + + Y G+ + K+ + + + + A
Sbjct: 99 PRFIKKLEPSRIVKQDEHTRYECKIG---GSPEIKVLWYKDETEIQESSKFRMSFVESVA 155
Query: 281 SLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWK 340
L + N +DSG Y EA N G + + V
Sbjct: 156 VLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKE------------------------ 191
Query: 341 PPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDG 400
P + L G + + G P W + E+
Sbjct: 192 ------------PPVFRKKP--HPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGK 237
Query: 401 RIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYV 446
+ K + T + A D G Y + N VGS + + +
Sbjct: 238 KYKIMSENFLTSIHILNVDSA-DIGEYQCKASNDVGSYTCVGSITL 282
|
| >2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284 | Back alignment and structure |
|---|
Score = 78.6 bits (194), Expect = 2e-16
Identities = 39/213 (18%), Positives = 64/213 (30%), Gaps = 43/213 (20%)
Query: 253 AAGTEKPKIS-----LDALIGKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDM 307
GT KI+ + G K + TA+L + + D+G Y A N G D
Sbjct: 29 VTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDS 88
Query: 308 ADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTV 367
++ V P + + V
Sbjct: 89 CSAQLGVQEPP------------------------------RFIKKLEPS-------RIV 111
Query: 368 LAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSY 427
E G P+ +W + E+ + + E+ + + DSG Y
Sbjct: 112 KQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLS-VEDSGDY 170
Query: 428 TIQLVNTVGSDSASCKVYVVDKPSPPQGPLDVS 460
T + N GS S+S + V + P + P V
Sbjct: 171 TCEAHNAAGSASSSTSLKVKEPPVFRKKPHPVE 203
|
| >2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284 | Back alignment and structure |
|---|
Score = 69.4 bits (170), Expect = 3e-13
Identities = 28/160 (17%), Positives = 46/160 (28%), Gaps = 12/160 (7%)
Query: 353 APKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTI 412
P + + GE T +G W + E+ P G K EN
Sbjct: 5 PPFFDLKP--VSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTAT 62
Query: 413 YRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQGPLDVSDITPES-----C 467
D+G YT N G DS S ++ V + P + + + C
Sbjct: 63 LTVLKV-TKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYEC 121
Query: 468 SLSWKPPLD----DGGSPITNYVVEKYESATGVSDLFISK 503
+ P + + I + V+ L +
Sbjct: 122 KIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYN 161
|
| >2haz_A N-CAM 1, neural cell adhesion molecule 1; fibronectin type III repeat, FN1, beta sandwich; 1.70A {Homo sapiens} SCOP: b.1.2.1 Length = 105 | Back alignment and structure |
|---|
Score = 100 bits (250), Expect = 1e-25
Identities = 26/104 (25%), Positives = 39/104 (37%), Gaps = 9/104 (8%)
Query: 10 PFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDK-TGNWEKA---VVV 65
D P P+ + + +Q+ P + GG PI Y E + W
Sbjct: 3 HMDTPSSPSIDQ-VEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKE 61
Query: 66 PAGETSCTVPGLIEGETYQFQVRAVNAAGPGEASKP----TAPI 105
+ E T+ GL TY ++ A+N G GE S T P+
Sbjct: 62 ASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKTQPV 105
|
| >2haz_A N-CAM 1, neural cell adhesion molecule 1; fibronectin type III repeat, FN1, beta sandwich; 1.70A {Homo sapiens} SCOP: b.1.2.1 Length = 105 | Back alignment and structure |
|---|
Score = 55.9 bits (135), Expect = 4e-10
Identities = 11/49 (22%), Positives = 16/49 (32%), Gaps = 2/49 (4%)
Query: 447 VDKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATG 495
+D PS P + + + + P GG PI Y E
Sbjct: 4 MDTPSSPSID--QVEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEE 50
|
| >2haz_A N-CAM 1, neural cell adhesion molecule 1; fibronectin type III repeat, FN1, beta sandwich; 1.70A {Homo sapiens} SCOP: b.1.2.1 Length = 105 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 2e-05
Identities = 7/35 (20%), Positives = 11/35 (31%), Gaps = 2/35 (5%)
Query: 318 PGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITG 352
P P+ + + + P GG PI
Sbjct: 7 PSSPSIDQ--VEPYSSTAQVQFDEPEATGGVPILK 39
|
| >1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY acidic protein fold, fibronectin type III fold, hormone- growth factor complex; NMR {Homo sapiens} Length = 680 | Back alignment and structure |
|---|
Score = 108 bits (271), Expect = 3e-25
Identities = 57/506 (11%), Positives = 116/506 (22%), Gaps = 110/506 (21%)
Query: 8 KNPFDEPGKPTDLEATDWDKD-----HVDLQWTPPISDGGSPITGYVVEMK-------DK 55
P P +L + + V + W P + P+ Y V
Sbjct: 261 SKDPSAPPAPANLRLANSTVNSDGSVTVTIVWDLP-EEPDIPVHHYKVFWSWMVSSKSLV 319
Query: 56 TGNWEKAVVVPAGETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAPR 115
++ + S + L Y +++A+ G + +
Sbjct: 320 PTKKKRRKTTDGFQNSVILEKLQPDCDYVVELQAITYWGQTRLKSAKVSLHFTSTHATNN 379
Query: 116 IDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWS 175
++ + + + P R L V A + + + W
Sbjct: 380 KEQLV----------KTRKGGIQTQLPFQRRRPTRPLEVGAPFYQD----GQLQVKVYWK 425
Query: 176 INGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVTGTEFTD 235
G+ +S
Sbjct: 426 KTEDPTVNRYHVRWFPEACA-------------------HNRTTGSEASSGMTHENYIIL 466
Query: 236 NNVHEGKAYEYRVSAVNAAGTEKPKISLDALIGKRIKEFVTSTTASLNIKNSVRKDSGIY 295
++ Y+ V + K + +T +K K G
Sbjct: 467 QDLSFSCKYKVTVQPIRPKSHSKAEAV------------FFTTPPCSALKGKSHKPIGCL 514
Query: 296 KIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPK 355
+ V++KP + + SWK + P+TG
Sbjct: 515 GEAGH---------VLSKVLAKPENLSASFIV-QDVNITGHFSWKMAKANLYQPMTG--- 561
Query: 356 ITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRN 415
F +T W E + S++Q + +
Sbjct: 562 -----------------FQVT------------WAEVTTESRQNSLPNSIISQSQILPSD 592
Query: 416 KSAKRATD---SGSYTIQL--VNTVG-SDSASCKVYVVDKPSPPQGPLDVSDITPESCSL 469
+ S Y +++ + G + + P + P
Sbjct: 593 HYVLTVPNLRPSTLYRLEVQVLTPGGEGPATIKTFRTPELPPSSAHRSHLKHRHPH---- 648
Query: 470 SWKPPLDDGGSPITNYVVEKYESATG 495
+KP + G PI N ++ + TG
Sbjct: 649 HYKPSPERYGKPIPNPLLGLDSTRTG 674
|
| >1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY acidic protein fold, fibronectin type III fold, hormone- growth factor complex; NMR {Homo sapiens} Length = 680 | Back alignment and structure |
|---|
Score = 75.0 bits (183), Expect = 2e-14
Identities = 19/110 (17%), Positives = 38/110 (34%), Gaps = 12/110 (10%)
Query: 14 PGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMK---------DKTGNWEKAVV 64
+L T+ ++++W+ + YVV+ + D +W+
Sbjct: 161 LKPRKELRFTELQSGQLEVKWSSK-FNISIEPVIYVVQRRWNYGIHPSEDDATHWQTVAQ 219
Query: 65 VPAGETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAP 114
+ + + YQF+V AVN G + P+ + AP
Sbjct: 220 TT--DERVQLTDIRPSRWYQFRVAAVNVHGTRGFTAPSKHFRSSKDPSAP 267
|
| >1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY acidic protein fold, fibronectin type III fold, hormone- growth factor complex; NMR {Homo sapiens} Length = 680 | Back alignment and structure |
|---|
Score = 58.4 bits (140), Expect = 4e-09
Identities = 28/232 (12%), Positives = 63/232 (27%), Gaps = 47/232 (20%)
Query: 289 RKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGT 348
+ SG+ K N G + + P P + +T + + + W +
Sbjct: 132 NECSGVKKC-CSNGCGHTCQVPKTLYKGVPLKPRKELRFTELQSGQLEVKWSSKFNISIE 190
Query: 349 PITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSE 408
P+ + + ++ P+ +
Sbjct: 191 PVI---------------------YVVQRRWNYGIHPSE---------DDATHWQTVAQT 220
Query: 409 NQTIYRNKSAKRATDSGSYTIQL--VNTVGSDSASCKVYVV---DKPSPPQGPLDV---- 459
+ + + Y ++ VN G+ + PS P P ++
Sbjct: 221 TDERVQLTDIRPSRW---YQFRVAAVNVHGTRGFTAPSKHFRSSKDPSAPPAPANLRLAN 277
Query: 460 ---SDITPESCSLSWKPPLDDGGSPITNYVVEKYESATGVSDLFISKSEVKT 508
+ + ++ W P + P+ +Y V + S + K KT
Sbjct: 278 STVNSDGSVTVTIVWDLPEEPDI-PVHHYKVFWSWMVSSKSLVPTKKKRRKT 328
|
| >1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY acidic protein fold, fibronectin type III fold, hormone- growth factor complex; NMR {Homo sapiens} Length = 680 | Back alignment and structure |
|---|
Score = 51.1 bits (121), Expect = 6e-07
Identities = 32/262 (12%), Positives = 61/262 (23%), Gaps = 39/262 (14%)
Query: 1 MDHSVLIKNPFDEPGKPTDLEATDWDKDH--VDLQWTPPISDGGSPITGYVVEMK----- 53
+ P +P ++ A + V + W + Y V
Sbjct: 389 GGIQTQLPFQRRRPTRPLEVGAPFYQDGQLQVKVYWKKT---EDPTVNRYHVRWFPEACA 445
Query: 54 DKTGNWEKAVVVPAGETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLA 113
+A E + L Y+ V+ + +A A P A
Sbjct: 446 HNRTTGSEASSGMTHENYIILQDLSFSCKYKVTVQPIRPKSHSKAE---AVFFTTPPCSA 502
Query: 114 PRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHG 173
+ +AG S + + LS + + + G N
Sbjct: 503 LKGKSHKPIGCLGEAGHVLSKVLAKPENLSASFIV------QDVNITGHFSWKMAKANLY 556
Query: 174 WSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVTGTEF 233
+ G + T +L N++ + +
Sbjct: 557 QPMTGFQVT--------------------WAEVTTESRQNSLPNSIISQSQILPSDHYVL 596
Query: 234 TDNNVHEGKAYEYRVSAVNAAG 255
T N+ Y V + G
Sbjct: 597 TVPNLRPSTLYRLEVQVLTPGG 618
|
| >2yrz_A Integrin beta-4; GP150, CD104 antigen, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 118 | Back alignment and structure |
|---|
Score = 99.0 bits (247), Expect = 4e-25
Identities = 25/107 (23%), Positives = 42/107 (39%), Gaps = 3/107 (2%)
Query: 4 SVLIKNPFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGN-WEKA 62
S + P PT L + + + W P + P+ GY VE + G +
Sbjct: 8 SHDSRLTAGVPDTPTRLVFSALGPTSLRVSWQEPRCER--PLQGYSVEYQLLNGGELHRL 65
Query: 63 VVVPAGETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKP 109
+ +TS V L+ +Y F+VRA + G G + I ++
Sbjct: 66 NIPNPAQTSVVVEDLLPNHSYVFRVRAQSQEGWGREREGVITIESQV 112
|
| >2yrz_A Integrin beta-4; GP150, CD104 antigen, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 118 | Back alignment and structure |
|---|
Score = 50.9 bits (122), Expect = 3e-08
Identities = 15/60 (25%), Positives = 22/60 (36%), Gaps = 3/60 (5%)
Query: 436 GSDSASCKVYVVDKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATG 495
GS + P P + S + P S +SW+ P + P+ Y VE G
Sbjct: 4 GSSGSHDSRLTAGVPDTPTRLV-FSALGPTSLRVSWQEPRCER--PLQGYSVEYQLLNGG 60
|
| >1x4x_A Fibronectin type-III domain containing protein 3A; FN3, immunoglobulin-like beta- sandwich fold, KIAA0970, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 106 | Back alignment and structure |
|---|
Score = 98.1 bits (245), Expect = 5e-25
Identities = 21/92 (22%), Positives = 36/92 (39%), Gaps = 3/92 (3%)
Query: 14 PGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVVVPAGETSCT 73
P + + T + W P G+ +T Y +E G+ + P S
Sbjct: 8 PDQCKPPQVTCRSATCAQVNWEVP-LSNGTDVTEYRLEWGGVEGSMQICYCGP--GLSYE 64
Query: 74 VPGLIEGETYQFQVRAVNAAGPGEASKPTAPI 105
+ GL TY +V+A++ G G S+ A +
Sbjct: 65 IKGLSPATTYYCRVQALSVVGAGPFSEVVACV 96
|
| >1x4x_A Fibronectin type-III domain containing protein 3A; FN3, immunoglobulin-like beta- sandwich fold, KIAA0970, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 106 | Back alignment and structure |
|---|
Score = 48.8 bits (117), Expect = 1e-07
Identities = 9/43 (20%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Query: 450 PSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYES 492
P + P V+ + ++W+ P G+ +T Y +E
Sbjct: 8 PDQCKPP-QVTCRSATCAQVNWEVP-LSNGTDVTEYRLEWGGV 48
|
| >2e3v_A Neural cell adhesion molecule 1, 140 kDa isoform; NCAM, N-CAM 1, NCAM-120, CD56 antigen, membra protein, glycoprotein, structural genomics, NPPSFA; HET: PGE BTB; 1.95A {Homo sapiens} Length = 122 | Back alignment and structure |
|---|
Score = 96.8 bits (241), Expect = 3e-24
Identities = 28/119 (23%), Positives = 46/119 (38%), Gaps = 10/119 (8%)
Query: 9 NPFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDK-TGNWEKA---VV 64
+ P P+ + + +Q+ P + GG PI Y E + W
Sbjct: 3 SGSSGPSSPSIDQVEPYS-STAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAK 61
Query: 65 VPAGETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPI---VAKPKNLAPRIDRST 120
+ E T+ GL TY ++ A+N G GE S + V +P AP+++ S
Sbjct: 62 EASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKTQPVREPS--APKLEGSG 118
|
| >2e3v_A Neural cell adhesion molecule 1, 140 kDa isoform; NCAM, N-CAM 1, NCAM-120, CD56 antigen, membra protein, glycoprotein, structural genomics, NPPSFA; HET: PGE BTB; 1.95A {Homo sapiens} Length = 122 | Back alignment and structure |
|---|
Score = 52.1 bits (125), Expect = 2e-08
Identities = 10/46 (21%), Positives = 14/46 (30%), Gaps = 2/46 (4%)
Query: 450 PSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATG 495
PS P + + + + P GG PI Y E
Sbjct: 8 PSSPSID--QVEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEE 51
|
| >2e3v_A Neural cell adhesion molecule 1, 140 kDa isoform; NCAM, N-CAM 1, NCAM-120, CD56 antigen, membra protein, glycoprotein, structural genomics, NPPSFA; HET: PGE BTB; 1.95A {Homo sapiens} Length = 122 | Back alignment and structure |
|---|
Score = 40.5 bits (95), Expect = 2e-04
Identities = 7/35 (20%), Positives = 11/35 (31%), Gaps = 2/35 (5%)
Query: 318 PGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITG 352
P P+ + + + P GG PI
Sbjct: 8 PSSPSIDQ--VEPYSSTAQVQFDEPEATGGVPILK 40
|
| >3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197 | Back alignment and structure |
|---|
Score = 99.0 bits (247), Expect = 3e-24
Identities = 35/182 (19%), Positives = 59/182 (32%), Gaps = 35/182 (19%)
Query: 268 GKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDY 327
++ K T +L + ++D G+Y A N+ G ++++ + P G
Sbjct: 51 SRKYKMSSDGRTHTLTVMTEEQEDEGVYTCIATNEVGEVETSSKLLLQATPQFHPGYP-- 108
Query: 328 TTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTP 387
G + V + GRP P
Sbjct: 109 ---------------------------------LKEKYYGAVGSTLRLHVMYIGRPVPAM 135
Query: 388 IWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVV 447
W + I E +E+ T K+ +R T +G Y +QL N G+ A V +
Sbjct: 136 TWFHGQKLLQNSENITIENTEHYTHLVMKNVQRKTHAGKYKVQLSNVFGTVDAILDVEIQ 195
Query: 448 DK 449
DK
Sbjct: 196 DK 197
|
| >3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197 | Back alignment and structure |
|---|
Score = 72.0 bits (177), Expect = 1e-14
Identities = 26/111 (23%), Positives = 39/111 (35%), Gaps = 3/111 (2%)
Query: 353 APKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTI 412
AP I ++ +D+T GE ++ GRP P W G E+ + K +
Sbjct: 7 APGIRKEM--KDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHT 64
Query: 413 YRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQGPLDVSDIT 463
+ + D G YT N VG S K+ + P G
Sbjct: 65 LTVMTEE-QEDEGVYTCIATNEVGEVETSSKLLLQATPQFHPGYPLKEKYY 114
|
| >3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197 | Back alignment and structure |
|---|
Score = 62.8 bits (153), Expect = 1e-11
Identities = 29/160 (18%), Positives = 51/160 (31%), Gaps = 19/160 (11%)
Query: 174 WSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVT---- 229
W G+ + + + L + + D G Y+ N +G S+ +
Sbjct: 41 WYRFGKELIQSRKYKMSSDGRTHTLTVMTEEQEDEGVYTCIATNEVGEVETSSKLLLQAT 100
Query: 230 ------GTEFTDNNVHEGKAYEYRVSAVNAAGTEKPKIS---LDALI--GKRIKEFVTST 278
G V G P ++ L+ + I T
Sbjct: 101 PQFHPGYPLKEKYYGAVGSTLRLH---VMYIGRPVPAMTWFHGQKLLQNSENITIENTEH 157
Query: 279 TASLNIKNSVRK-DSGIYKIEAKNDYGIDMADIEVVVVSK 317
L +KN RK +G YK++ N +G A ++V + K
Sbjct: 158 YTHLVMKNVQRKTHAGKYKVQLSNVFGTVDAILDVEIQDK 197
|
| >2crm_A Fibronectin type-III domain containing protein 3A; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 120 | Back alignment and structure |
|---|
Score = 96.3 bits (240), Expect = 3e-24
Identities = 24/102 (23%), Positives = 39/102 (38%), Gaps = 4/102 (3%)
Query: 12 DEPGKPTD-LEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVVVPAGET 70
D+PG P + W PP +GG+ I YVVEM + + + ++
Sbjct: 16 DKPGIPVKPSVKGKIHSHSFKITWDPPKDNGGATINKYVVEMAEGSNGNKWEMIYSGATR 75
Query: 71 SCTVPGLIEGETYQFQVRAVNAAGPGEASKPTA---PIVAKP 109
L G Y+ +V ++ G S+ P V+ P
Sbjct: 76 EHLCDRLNPGCFYRLRVYCISDGGQSAVSESLLVQTPAVSGP 117
|
| >2crm_A Fibronectin type-III domain containing protein 3A; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 120 | Back alignment and structure |
|---|
Score = 81.3 bits (201), Expect = 8e-19
Identities = 22/60 (36%), Positives = 27/60 (45%)
Query: 436 GSDSASCKVYVVDKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATG 495
GS DKP P P I S ++W PP D+GG+ I YVVE E + G
Sbjct: 4 GSSGVVEFTTCPDKPGIPVKPSVKGKIHSHSFKITWDPPKDNGGATINKYVVEMAEGSNG 63
|
| >2crm_A Fibronectin type-III domain containing protein 3A; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 120 | Back alignment and structure |
|---|
Score = 57.8 bits (140), Expect = 2e-10
Identities = 14/49 (28%), Positives = 18/49 (36%)
Query: 304 GIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITG 352
G KPG P P + S ++W PP D+GG I
Sbjct: 4 GSSGVVEFTTCPDKPGIPVKPSVKGKIHSHSFKITWDPPKDNGGATINK 52
|
| >2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197 | Back alignment and structure |
|---|
Score = 98.6 bits (246), Expect = 5e-24
Identities = 37/203 (18%), Positives = 62/203 (30%), Gaps = 40/203 (19%)
Query: 253 AAGTEKPKIS-------LDALIGKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGI 305
G KP + + A K + L I + D+ +Y++ A N G
Sbjct: 28 VTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRATNQGGS 87
Query: 306 DMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDM 365
+ V PK + +
Sbjct: 88 VSGTASLEVEVPAKIH-------------------------------LPKTLEGM--GAV 114
Query: 366 TVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSG 425
L GE +I +PFSG+P P W D + +G + + + T + D+G
Sbjct: 115 HALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAG 174
Query: 426 SYTIQLVNTVGSDSASCKVYVVD 448
Y + N G D + ++ V D
Sbjct: 175 FYVVCAKNRFGIDQKTVELDVAD 197
|
| >2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197 | Back alignment and structure |
|---|
Score = 61.7 bits (150), Expect = 3e-11
Identities = 25/114 (21%), Positives = 44/114 (38%), Gaps = 8/114 (7%)
Query: 353 APKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDG-RIKFETSENQT 411
AP +L R++ V T+ +G PKP W G E+ DG + + + +
Sbjct: 4 APHFKEEL--RNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGY 61
Query: 412 IYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYV-----VDKPSPPQGPLDVS 460
++ D+ Y ++ N GS S + + V + P +G V
Sbjct: 62 HQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVH 115
|
| >2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197 | Back alignment and structure |
|---|
Score = 52.8 bits (127), Expect = 3e-08
Identities = 35/161 (21%), Positives = 58/161 (36%), Gaps = 23/161 (14%)
Query: 174 WSINGQ-VCQIGGRADVQTTKSET-VLDIPFCSRSDTGHYSLTLENNLGTATASAHVT-- 229
W G+ + G + +Q K L I + D Y + N G+ + +A +
Sbjct: 38 WYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVE 97
Query: 230 ----------GTEFTDNNVHEGKAYEYRVSAVNAAGTEKPKISL---DALI--GKRIKEF 274
+ G+ ++ G P I+ LI +
Sbjct: 98 VPAKIHLPKTLEGMGAVHALRGEVVSIKIPFS---GKPDPVITWQKGQDLIDNNGHYQVI 154
Query: 275 VTSTTASLNIKNSVRK-DSGIYKIEAKNDYGIDMADIEVVV 314
VT + SL N V + D+G Y + AKN +GID +E+ V
Sbjct: 155 VTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDV 195
|
| >1cfb_A Drosophila neuroglian; neural adhesion molecule; HET: NAG; 2.00A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1 Length = 205 | Back alignment and structure |
|---|
Score = 97.9 bits (244), Expect = 1e-23
Identities = 23/100 (23%), Positives = 33/100 (33%), Gaps = 4/100 (4%)
Query: 12 DEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDK--TGNWEKAVVVPAGE 69
D P P T D ++ W D SPI Y ++ +W+ A
Sbjct: 4 DVPNAPKLTGITC-QADKAEIHWEQQ-GDNRSPILHYTIQFNTSFTPASWDAAYEKVPNT 61
Query: 70 TSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKP 109
S V + Y F+V A N G S + +P
Sbjct: 62 DSSFVVQMSPWANYTFRVIAFNKIGASPPSAHSDSCTTQP 101
|
| >1cfb_A Drosophila neuroglian; neural adhesion molecule; HET: NAG; 2.00A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1 Length = 205 | Back alignment and structure |
|---|
Score = 88.6 bits (220), Expect = 2e-20
Identities = 16/92 (17%), Positives = 32/92 (34%), Gaps = 3/92 (3%)
Query: 14 PGKPTDLEATDWDKDHVDLQWTP-PISDGGSPITGYVVEMKDKTGN--WEKAVVVPAGET 70
P ++ + +++ + WTP P + +P Y V K WE + +
Sbjct: 105 FKNPDNVVGQGTEPNNLVISWTPMPEIEHNAPNFHYYVSWKRDIPAAAWENNNIFDWRQN 164
Query: 71 SCTVPGLIEGETYQFQVRAVNAAGPGEASKPT 102
+ + Y +V A+N G +
Sbjct: 165 NIVIADQPTFVKYLIKVVAINDRGESNVAAEE 196
|
| >1cfb_A Drosophila neuroglian; neural adhesion molecule; HET: NAG; 2.00A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1 Length = 205 | Back alignment and structure |
|---|
Score = 57.4 bits (139), Expect = 1e-09
Identities = 31/181 (17%), Positives = 49/181 (27%), Gaps = 43/181 (23%)
Query: 313 VVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEE 372
+V P P T + + W+ D +PI
Sbjct: 1 IVQDVPNAPKLTG--ITCQADKAEIHWEQQ-GDNRSPILH-------------------- 37
Query: 373 FTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLV 432
+TI S P W ++V Y + +
Sbjct: 38 YTIQFNTSFTPAS---WDAAYEKVPNTDSSFVVQMSPWANYT------------FRVIAF 82
Query: 433 NTVG-SD-SASCKVYVVDKPSPPQGPLDVS--DITPESCSLSWKP-PLDDGGSPITNYVV 487
N +G S SA P + P +V P + +SW P P + +P +Y V
Sbjct: 83 NKIGASPPSAHSDSCTTQPDVPFKNPDNVVGQGTEPNNLVISWTPMPEIEHNAPNFHYYV 142
Query: 488 E 488
Sbjct: 143 S 143
|
| >1cfb_A Drosophila neuroglian; neural adhesion molecule; HET: NAG; 2.00A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1 Length = 205 | Back alignment and structure |
|---|
Score = 54.7 bits (132), Expect = 9e-09
Identities = 10/44 (22%), Positives = 18/44 (40%), Gaps = 3/44 (6%)
Query: 446 VVDKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEK 489
V D P+ P+ + + W+ D SPI +Y ++
Sbjct: 2 VQDVPNAPKLT--GITCQADKAEIHWEQQ-GDNRSPILHYTIQF 42
|
| >2dn7_A Receptor-type tyrosine-protein phosphatase F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 107 | Back alignment and structure |
|---|
Score = 94.0 bits (234), Expect = 2e-23
Identities = 26/94 (27%), Positives = 39/94 (41%), Gaps = 2/94 (2%)
Query: 12 DEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVVVPAGETS 71
PG+PT + + + LQW PP G + GY ++ + +
Sbjct: 6 SGPGRPT-MMISTTAMNTALLQWHPPKELPG-ELLGYRLQYCRADEARPNTIDFGKDDQH 63
Query: 72 CTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPI 105
TV GL +G TY F++ A N AG GE +
Sbjct: 64 FTVTGLHKGTTYIFRLAAKNRAGLGEEFEKEIRT 97
|
| >2dn7_A Receptor-type tyrosine-protein phosphatase F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 107 | Back alignment and structure |
|---|
Score = 50.5 bits (121), Expect = 4e-08
Identities = 9/48 (18%), Positives = 17/48 (35%), Gaps = 3/48 (6%)
Query: 448 DKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATG 495
P P + +S + L W PP + G + Y ++ +
Sbjct: 6 SGPGRP--TMMISTTAMNTALLQWHPPKELPG-ELLGYRLQYCRADEA 50
|
| >2dn7_A Receptor-type tyrosine-protein phosphatase F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 107 | Back alignment and structure |
|---|
Score = 40.5 bits (95), Expect = 1e-04
Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 3/35 (8%)
Query: 318 PGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITG 352
PG PT + +T + + W PP + G + G
Sbjct: 8 PGRPT--MMISTTAMNTALLQWHPPKELPG-ELLG 39
|
| >2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212 | Back alignment and structure |
|---|
Score = 97.2 bits (242), Expect = 2e-23
Identities = 37/227 (16%), Positives = 76/227 (33%), Gaps = 30/227 (13%)
Query: 228 VTGTEFTDNNVHEGKAYEYRVSAVNAAGTEKPKIS-------LDALIGKRIKEFVTSTTA 280
++ T+ + EG ++ + E K++ + R+K VT
Sbjct: 6 LSATDLKIQSTAEG----IQLYSFVTYYVEDLKVNWSHNGSAIRY--SDRVKTGVTGEQI 59
Query: 281 SLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWK 340
L I D G Y +E + +++ + ++ + +++ +
Sbjct: 60 WLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQA---YDEAYAEFQRLKQAAIAEKNR 116
Query: 341 PPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDG 400
V + G P +T+ G+ +T G P P W N ++
Sbjct: 117 ARV------LGGLP--------DVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALAQTD 162
Query: 401 RIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVV 447
+ +T Y + DSG Y + + N GS+++ V V
Sbjct: 163 HCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVF 209
|
| >2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212 | Back alignment and structure |
|---|
Score = 60.7 bits (147), Expect = 1e-10
Identities = 33/176 (18%), Positives = 56/176 (31%), Gaps = 37/176 (21%)
Query: 174 WSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVTGTEF 233
WS NG + R T + L I + +D G Y + L + + ++G +
Sbjct: 37 WSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAY 96
Query: 234 TDNNVHEGKAYEYRVSAVN-------------------------AAGTEKPKIS--LDAL 266
+ + + ++ N G P++S +
Sbjct: 97 DEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKN-- 154
Query: 267 IGKRIKE-------FVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVV 315
K + + F TA I DSG Y + KN YG + +D V V
Sbjct: 155 -EKALAQTDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVF 209
|
| >2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212 | Back alignment and structure |
|---|
Score = 51.4 bits (123), Expect = 1e-07
Identities = 12/112 (10%), Positives = 26/112 (23%), Gaps = 11/112 (9%)
Query: 364 DMTVLAGEEFTI----------TVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIY 413
L+ + I + W+ NG + R+K + Q
Sbjct: 2 SSIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWL 61
Query: 414 RNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQGPLDVSDITPE 465
+ D G Y ++L + + + +
Sbjct: 62 QINEP-TPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIA 112
|
| >1wfo_A Sidekick 2; FN3, cell adhesion, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 130 | Back alignment and structure |
|---|
Score = 93.6 bits (233), Expect = 5e-23
Identities = 27/108 (25%), Positives = 39/108 (36%), Gaps = 3/108 (2%)
Query: 4 SVLIKNPFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMK--DKTGNWEK 61
+L + D PG P + + V L W PP + G I Y + + T N
Sbjct: 18 PILERTLDDVPGPPMGILFPEVRTTSVRLIWQPPAAPNG-IILAYQITHRLNTTTANTAT 76
Query: 62 AVVVPAGETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKP 109
V+ T GL Y F++ A G GEA++ K
Sbjct: 77 VEVLAPSARQYTATGLKPESVYLFRITAQTRKGWGEAAEALVVTTEKR 124
|
| >1wfo_A Sidekick 2; FN3, cell adhesion, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 130 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 1e-05
Identities = 16/61 (26%), Positives = 23/61 (37%), Gaps = 6/61 (9%)
Query: 432 VNTVGSDSASCKVYVV----DKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVV 487
+G S S + D P PP G + ++ S L W+PP G I Y +
Sbjct: 6 SGRIGDGSPSHPPILERTLDDVPGPPMG-ILFPEVRTTSVRLIWQPPAAPNG-IILAYQI 63
Query: 488 E 488
Sbjct: 64 T 64
|
| >1v5j_A KIAA1355 protein, RSGI RUH-008; FN3 domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, cell adhesion; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 108 | Back alignment and structure |
|---|
Score = 92.3 bits (229), Expect = 8e-23
Identities = 26/103 (25%), Positives = 39/103 (37%), Gaps = 3/103 (2%)
Query: 9 NPFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAV-VVPA 67
+ P L A + V L W PP + GYV+E + + WE V
Sbjct: 3 SGSSGLSPPRGLVAVRTPRG-VLLHWDPP-ELVPKRLDGYVLEGRQGSQGWEVLDPAVAG 60
Query: 68 GETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPK 110
ET VPGLI+ Y+F++ A + + S +
Sbjct: 61 TETELLVPGLIKDVLYEFRLVAFAGSFVSDPSNTANVSTSGLS 103
|
| >1v5j_A KIAA1355 protein, RSGI RUH-008; FN3 domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, cell adhesion; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 108 | Back alignment and structure |
|---|
Score = 46.1 bits (109), Expect = 1e-06
Identities = 12/43 (27%), Positives = 16/43 (37%), Gaps = 3/43 (6%)
Query: 449 KPSPPQGP--LDVSDITPESCSLSWKPPLDDGGSPITNYVVEK 489
S P V+ TP L W PP + + YV+E
Sbjct: 3 SGSSGLSPPRGLVAVRTPRGVLLHWDPP-ELVPKRLDGYVLEG 44
|
| >2ed7_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 119 | Back alignment and structure |
|---|
Score = 92.5 bits (230), Expect = 9e-23
Identities = 28/92 (30%), Positives = 38/92 (41%), Gaps = 2/92 (2%)
Query: 12 DEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAV-VVPAGET 70
P P D+ V L W PP ++ I + V + N E+A+ G
Sbjct: 16 VLPSAPRDVVPVLVSSRFVRLSWRPP-AEAKGNIQTFTVFFSREGDNRERALNTTQPGSL 74
Query: 71 SCTVPGLIEGETYQFQVRAVNAAGPGEASKPT 102
TV L Y F+V A N GPGE+S+P
Sbjct: 75 QLTVGNLKPEAMYTFRVVAYNEWGPGESSQPI 106
|
| >2ed7_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 119 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 7e-07
Identities = 16/61 (26%), Positives = 23/61 (37%), Gaps = 3/61 (4%)
Query: 436 GSDSASCKVYVVDKPSPPQGPLDV--SDITPESCSLSWKPPLDDGGSPITNYVVEKYESA 493
GS +S K + P P DV ++ LSW+PP + G I + V
Sbjct: 1 GSSGSSGKPAIPSSSVLPSAPRDVVPVLVSSRFVRLSWRPPAEAKG-NIQTFTVFFSREG 59
Query: 494 T 494
Sbjct: 60 D 60
|
| >2ic2_A CG9211-PA, GH03927P; IHOG, hedgehog, fibronectin type III, protein binding; HET: MSE; 1.30A {Drosophila melanogaster} SCOP: b.1.2.1 Length = 115 | Back alignment and structure |
|---|
Score = 92.3 bits (229), Expect = 1e-22
Identities = 24/109 (22%), Positives = 40/109 (36%), Gaps = 14/109 (12%)
Query: 14 PGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKD--KTGNWEKA--------- 62
PT T + V L+W P + G PI + V+ + K NW+
Sbjct: 3 TYPPTPPNVTRLSDESVMLRWMVP-RNDGLPIVIFKVQYRMVGKRKNWQTTNDNIPYGKP 61
Query: 63 --VVVPAGETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKP 109
+ +V L TY+F++ AV + + S +A +P
Sbjct: 62 KWNSELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKESNTSAKFYLQP 110
|
| >2ic2_A CG9211-PA, GH03927P; IHOG, hedgehog, fibronectin type III, protein binding; HET: MSE; 1.30A {Drosophila melanogaster} SCOP: b.1.2.1 Length = 115 | Back alignment and structure |
|---|
Score = 49.9 bits (119), Expect = 7e-08
Identities = 13/48 (27%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
Query: 450 PSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATGVS 497
PP P +V+ ++ ES L W P + G PI + V+ +
Sbjct: 3 TYPP-TPPNVTRLSDESVMLRWMVP-RNDGLPIVIFKVQYRMVGKRKN 48
|
| >2ic2_A CG9211-PA, GH03927P; IHOG, hedgehog, fibronectin type III, protein binding; HET: MSE; 1.30A {Drosophila melanogaster} SCOP: b.1.2.1 Length = 115 | Back alignment and structure |
|---|
Score = 39.1 bits (91), Expect = 5e-04
Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Query: 318 PGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITG 352
PPT P T ++ ESV + W P + G PI
Sbjct: 3 TYPPTPPN-VTRLSDESVMLRWMVP-RNDGLPIVI 35
|
| >1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A Length = 93 | Back alignment and structure |
|---|
Score = 90.8 bits (226), Expect = 1e-22
Identities = 31/94 (32%), Positives = 45/94 (47%), Gaps = 3/94 (3%)
Query: 353 APKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTI 412
PKI + R + + AG + V F G P PT WTV + + + + T
Sbjct: 2 KPKILTAS--RKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTS 59
Query: 413 YRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYV 446
SAKRA DSG+Y +++ N +G D A +V V
Sbjct: 60 IFFPSAKRA-DSGNYKLKVKNELGEDEAIFEVIV 92
|
| >1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A Length = 93 | Back alignment and structure |
|---|
Score = 55.8 bits (135), Expect = 3e-10
Identities = 26/118 (22%), Positives = 44/118 (37%), Gaps = 27/118 (22%)
Query: 112 LAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLN 171
L P+I + +KIKAG + + +V + +P +P
Sbjct: 1 LKPKI-LTASRKIKIKAGFTHNLEVD------FIGAP------------------DPTAT 35
Query: 172 HGWSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVT 229
W++ + V S T + P R+D+G+Y L ++N LG A V
Sbjct: 36 --WTVGDSGAALAPELLVDAKSSTTSIFFPSAKRADSGNYKLKVKNELGEDEAIFEVI 91
|
| >1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A Length = 93 | Back alignment and structure |
|---|
Score = 49.6 bits (119), Expect = 5e-08
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 5/69 (7%)
Query: 251 VNAAGTEKPKIS-----LDALIGKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGI 305
V+ G P + A + + S+T S+ ++ R DSG YK++ KN+ G
Sbjct: 24 VDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIFFPSAKRADSGNYKLKVKNELGE 83
Query: 306 DMADIEVVV 314
D A EV+V
Sbjct: 84 DEAIFEVIV 92
|
| >2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118 | Back alignment and structure |
|---|
Score = 91.7 bits (228), Expect = 2e-22
Identities = 31/104 (29%), Positives = 51/104 (49%), Gaps = 3/104 (2%)
Query: 348 TPITGAPKITSDLSIRD-MTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFET 406
I PKI +R GE+ + VPF G+P+P +WT G + R+ T
Sbjct: 16 REIAEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAPLDTS-RVHVRT 74
Query: 407 SENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKP 450
S+ T++ + A R+ DSG Y + + D+A+ ++ VV+K
Sbjct: 75 SDFDTVFFVRQAARS-DSGEYELSVQIENMKDTATIRIRVVEKA 117
|
| >2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118 | Back alignment and structure |
|---|
Score = 60.1 bits (146), Expect = 2e-11
Identities = 25/138 (18%), Positives = 44/138 (31%), Gaps = 29/138 (21%)
Query: 94 GPGEASKPTAPIVAKPKNLAPRI--DRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRA 151
G + P+ + P+I R K G+ + V
Sbjct: 2 SSGSSGTLAQPVTIREIAEPPKIRLPRHLRQTYIRKVGEQLNLVVP-------------F 48
Query: 152 LGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHY 211
G +P W+ G R V+T+ +TV + +RSD+G Y
Sbjct: 49 QG-------------KPRPQVVWTKGGAPLD-TSRVHVRTSDFDTVFFVRQAARSDSGEY 94
Query: 212 SLTLENNLGTATASAHVT 229
L+++ TA+ +
Sbjct: 95 ELSVQIENMKDTATIRIR 112
|
| >2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118 | Back alignment and structure |
|---|
Score = 58.6 bits (142), Expect = 7e-11
Identities = 17/73 (23%), Positives = 30/73 (41%), Gaps = 4/73 (5%)
Query: 251 VNAAGTEKPKIS----LDALIGKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGID 306
V G +P++ L R+ + ++ + R DSG Y++ + + D
Sbjct: 46 VPFQGKPRPQVVWTKGGAPLDTSRVHVRTSDFDTVFFVRQAARSDSGEYELSVQIENMKD 105
Query: 307 MADIEVVVVSKPG 319
A I + VV K G
Sbjct: 106 TATIRIRVVEKAG 118
|
| >2db8_A Tripartite motif protein 9, isoform 2; ring finger protein 91, TRIM9, KIAA0282, RNF91, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110 | Back alignment and structure |
|---|
Score = 91.4 bits (227), Expect = 2e-22
Identities = 29/105 (27%), Positives = 38/105 (36%), Gaps = 7/105 (6%)
Query: 8 KNPFDEPGKPT-DLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVVVP 66
+ P P LE + L W P P GY++E+ D + V
Sbjct: 4 GSSGPVPATPILQLEECCTHNNSATLSWKQP-PLSTVPADGYILELDD-GNGGQFREVYV 61
Query: 67 AGETSCTVPGLIEGETYQFQVRAVNAAGPGEASKP----TAPIVA 107
ET CTV GL TY +V+A N G SK T+
Sbjct: 62 GKETMCTVDGLHFNSTYNARVKAFNKTGVSPYSKTLVLQTSEGSG 106
|
| >2db8_A Tripartite motif protein 9, isoform 2; ring finger protein 91, TRIM9, KIAA0282, RNF91, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110 | Back alignment and structure |
|---|
Score = 52.1 bits (125), Expect = 1e-08
Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 1/46 (2%)
Query: 450 PSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATG 495
P+ P L+ S +LSWK P P Y++E + G
Sbjct: 10 PATPILQLEECCTHNNSATLSWKQPPLS-TVPADGYILELDDGNGG 54
|
| >2db8_A Tripartite motif protein 9, isoform 2; ring finger protein 91, TRIM9, KIAA0282, RNF91, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110 | Back alignment and structure |
|---|
Score = 39.4 bits (92), Expect = 3e-04
Identities = 9/35 (25%), Positives = 13/35 (37%), Gaps = 1/35 (2%)
Query: 318 PGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITG 352
P P ++ S ++SWK P P G
Sbjct: 10 PATPILQLEECCTHNNSATLSWKQPPLSTV-PADG 43
|
| >3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816 | Back alignment and structure |
|---|
Score = 97.7 bits (243), Expect = 1e-21
Identities = 65/333 (19%), Positives = 110/333 (33%), Gaps = 79/333 (23%)
Query: 174 WSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVT---- 229
W +G+ SE+VL I + D G Y + N+ +A ASA +
Sbjct: 377 WMKDGK----------AIGHSESVLRIESVKKEDKGMYQCFVRNDRESAEASAELKLGGR 426
Query: 230 ------GTEFTDNNVHEGKAYEYRVS-AVNAAGTEKPKIS-------LDALIGKRIKEFV 275
F + + G V A G P+IS + ++ ++V
Sbjct: 427 FDPPVIRQAFQEETMEPGP----SVFLKCVAGGNPTPEISWELDGKKIANNDRYQVGQYV 482
Query: 276 T---STTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTP 332
T + LNI + D G+YK AK+ G+ ++ V
Sbjct: 483 TVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNV------------------ 524
Query: 333 ESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVN 392
G P I + ++AGE +T P +G P + +W +
Sbjct: 525 ------------------YGLPYIRQ---MEKKAIVAGETLIVTCPVAGYPIDSIVWERD 563
Query: 393 GDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVG-SDSASCKVYVVDKPS 451
+ + + K + I ++ +R +D +YT N G S S +V V+ P
Sbjct: 564 NRALPINRKQKVFPNGTLII---ENVERNSDQATYTCVAKNQEGYSARGSLEVQVMVLPR 620
Query: 452 -PPQGPLDVSDITPESCSLSWKPPLDDGGSPIT 483
P + + +L P D I
Sbjct: 621 IIPFAFEEGPAQVGQYLTLHCSVPGGDLPLNID 653
|
| >3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816 | Back alignment and structure |
|---|
Score = 94.2 bits (234), Expect = 2e-20
Identities = 51/296 (17%), Positives = 90/296 (30%), Gaps = 68/296 (22%)
Query: 174 WSINGQVCQIGGR--ADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVTGT 231
W + + + + L I D+G Y + N++G + +T T
Sbjct: 282 WYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVT 341
Query: 232 EF-------TDNNVHEGKAYEYRVSAVNAAGTEKPKIS--LDALIGKRIKEFVTSTTASL 282
V G+ + G +S D GK I + + L
Sbjct: 342 APLSAKIDPPTQTVDFGRPAVFTCQY---TGNPIKTVSWMKD---GKAI----GHSESVL 391
Query: 283 NIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPP 342
I++ ++D G+Y+ +ND A E+ + + PP
Sbjct: 392 RIESVKKEDKGMYQCFVRNDRESAEASAELKLGGRFDPPV-------------------- 431
Query: 343 VDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRI 402
I A + + T+ G + G P P W ++G +++ + R
Sbjct: 432 -------IRQAFQ--------EETMEPGPSVFLKCVAGGNPTPEISWELDGKKIANNDRY 476
Query: 403 KFETSENQTIYRNKSAK--------RATDSGSYTIQLVNTVGSDSASCKVYVVDKP 450
+ Q + N A D G Y + VG S K+ V P
Sbjct: 477 QV----GQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVYGLP 528
|
| >3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816 | Back alignment and structure |
|---|
Score = 81.9 bits (202), Expect = 1e-16
Identities = 71/447 (15%), Positives = 116/447 (25%), Gaps = 99/447 (22%)
Query: 85 FQVRAVNAAGPGEASKPTAPIVAKPKNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSY 144
+Q N EAS A + + P I R + ++ G S
Sbjct: 404 YQCFVRNDRESAEAS---AELKLGGRFDPPVI-RQAFQEETMEPGPSVFLKCV------- 452
Query: 145 TKSPLRALGVRAN--STKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPF 202
N W + N+ GQ + G + L+I
Sbjct: 453 ---------AGGNPTPEISWELDGKKIANNDRYQVGQYVTVNG-------DVVSYLNITS 496
Query: 203 CSRSDTGHYSLTLENNLGTATASAHVT------GTEFTDNNVHEGKAYEYRVSAVNAAGT 256
+D G Y ++ +G A SA + + + G+ AG
Sbjct: 497 VHANDGGLYKCIAKSKVGVAEHSAKLNVYGLPYIRQMEKKAIVAGETLIVTCPV---AGY 553
Query: 257 EKPKIS--LDALIGKRIKE---FVTSTTASLNIKNSVRK-DSGIYKIEAKNDYGID-MAD 309
I D + + +L I+N R D Y AKN G
Sbjct: 554 PIDSIVWERD---NRALPINRKQKVFPNGTLIIENVERNSDQATYTCVAKNQEGYSARGS 610
Query: 310 IEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLA 369
+EV V+ P +
Sbjct: 611 LEVQVMVLPRIIPFAF-------------------------------------EEGPAQV 633
Query: 370 GEEFTITVPFSGRPKPTPI-WTVNGDEVSPDGRIKFE-TSENQTIYRNKSAKRATDSGSY 427
G+ T+ G P I WT++G +S D I ++ ++ + + +G++
Sbjct: 634 GQYLTLHCSVPGGDLPLNIDWTLDGQAISEDLGITTSRVGRRGSVLTIEAVEAS-HAGNF 692
Query: 428 TIQLVNTVGSDSASCKVYVVDKPSPPQGPLDVSDITPES----CSLSWKPPLD-----DG 478
T N G + + V P P D + C P
Sbjct: 693 TCHARNLAGHQQFTTPLNVYVPPRWILEPTDKAFAQGSDAKVECKADGFPKPQVTWKKAV 752
Query: 479 GSPITNYVVEKYESATGVSD--LFISK 503
G Y K V + L +
Sbjct: 753 GDTPGEYKDLKKSDNIRVEEGTLHVDN 779
|
| >3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816 | Back alignment and structure |
|---|
Score = 73.4 bits (180), Expect = 6e-14
Identities = 50/406 (12%), Positives = 91/406 (22%), Gaps = 93/406 (22%)
Query: 84 QFQVRAVNAAGPGEASKPTAPIVAKPKNLAPRIDRSTLNDVKIKAGQSFSFD--VKEFRE 141
F A+ A G S+ A P + N + +
Sbjct: 13 LFAAVALIACG----SQTLAANPPDADQKGPVFLKEPTNRIDFSNSTGAEIECKASGNPM 68
Query: 142 LSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIP 201
W++ +G ++ S+ L P
Sbjct: 69 PEII----------------WIRSDGTA-------------VGDVPGLRQISSDGKLVFP 99
Query: 202 FCSRSDT------GHYSLTLENNLGTA-TASAHVTG-------TEFTDNNVHEGKAYEYR 247
D Y+ N G+ + HV + +V G + +
Sbjct: 100 PFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNKEHVIRGNSAVIK 159
Query: 248 VSAVNAAGTEKPKIS-------LDALIGKRIKEFVTSTTASLNIKNSVRKDS-GIYKIEA 299
+ +S + +++ + L+I+ +D Y+
Sbjct: 160 CLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQCRT 219
Query: 300 KNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSD 359
K+ + P PK+ S
Sbjct: 220 KHRLTGETRLSATKGRLVITEPISSA---------------------------VPKVVSL 252
Query: 360 LSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQ-----TIYR 414
T + P G P P W + + + Q I
Sbjct: 253 AKFDMKTYSGSSTMALLCPAQGYPVPVFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKD 312
Query: 415 NKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQGPLDVS 460
DSG Y + N+VG +S + V S P +
Sbjct: 313 ----AVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQT 354
|
| >3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816 | Back alignment and structure |
|---|
Score = 71.9 bits (176), Expect = 2e-13
Identities = 49/305 (16%), Positives = 81/305 (26%), Gaps = 73/305 (23%)
Query: 174 WSINGQVCQIGGRADVQTTKSETVLDIPFCSR-SDTGHYSLTLENNLG-TATASAHVT-- 229
W + + I + Q L I R SD Y+ +N G +A S V
Sbjct: 560 WERDNRALPINRK---QKVFPNGTLIIENVERNSDQATYTCVAKNQEGYSARGSLEVQVM 616
Query: 230 ------GTEFTDNNVHEGKAYEYRVSAVNAAGTEKPK----------ISLDALIGKRIKE 273
F + G+ S G + P IS D I
Sbjct: 617 VLPRIIPFAFEEGPAQVGQYLTLHCSVP---GGDLPLNIDWTLDGQAISEDLGITTS--- 670
Query: 274 FVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPE 333
V + L I+ +G + A+N G + V P P
Sbjct: 671 RVGRRGSVLTIEAVEASHAGNFTCHARNLAGHQQFTTPLNVYVPPRWILEP--------- 721
Query: 334 SVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNG 393
D G + + G PKP W
Sbjct: 722 -----------------------------TDKAFAQGSDAKVECKADGFPKPQVTWKKAV 752
Query: 394 DEVSPDGRIKFETSENQTIYRN----KSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDK 449
+ + + + S+N + + + T+ G Y + +N +GS ++ + V
Sbjct: 753 GDTPGEYK-DLKKSDNIRVEEGTLHVDNI-QKTNEGYYLCEAINGIGSGLSAVIMISVQA 810
Query: 450 PSPPQ 454
Sbjct: 811 HHHHH 815
|
| >3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816 | Back alignment and structure |
|---|
Score = 66.5 bits (162), Expect = 1e-11
Identities = 37/210 (17%), Positives = 61/210 (29%), Gaps = 58/210 (27%)
Query: 253 AAGTEKPKIS-------LDALIGKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGI 305
A G P + + V + +L IK++V +DSG Y N G
Sbjct: 272 AQGYPVPVFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGG 331
Query: 306 DMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDM 365
+ + + V T D
Sbjct: 332 ESVETVLTV------------------------------------TAPLSAKIDP--PTQ 353
Query: 366 TVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSP-DGRIKFETSENQTIYRNKSAKRATDS 424
TV G T ++G P T W +G + + ++ +S K+ D
Sbjct: 354 TVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSESVLRI-----------ESVKKE-DK 401
Query: 425 GSYTIQLVNTVGSDSASCKVYVVDKPSPPQ 454
G Y + N S AS ++ + + PP
Sbjct: 402 GMYQCFVRNDRESAEASAELKLGGRFDPPV 431
|
| >3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816 | Back alignment and structure |
|---|
Score = 54.9 bits (132), Expect = 5e-08
Identities = 25/184 (13%), Positives = 40/184 (21%), Gaps = 40/184 (21%)
Query: 282 LNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKP 341
+N+ N K ++ A G + GP P +
Sbjct: 1 MNMPNERLKWLMLFAAVALIACGSQTLAANPPDADQKGP------VFLKEPTN------- 47
Query: 342 PVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGR 401
+ I SG P P IW + D
Sbjct: 48 ----------------------RIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVP 85
Query: 402 IKFETSENQTIY----RNKSAKRATDSGSYTIQLVNTVGSD-SASCKVYVVDKPSPPQGP 456
+ S + + R + ++ + Y N GS S V V
Sbjct: 86 GLRQISSDGKLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADV 145
Query: 457 LDVS 460
Sbjct: 146 NKEH 149
|
| >3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816 | Back alignment and structure |
|---|
Score = 52.2 bits (125), Expect = 3e-07
Identities = 39/298 (13%), Positives = 74/298 (24%), Gaps = 70/298 (23%)
Query: 198 LDIPFCSRSDTGHYSLTLENNLGTATASAHVTGTE-----FTDN-----NVHEGKAYEYR 247
+++P ++ G+ T +A+ + F + E
Sbjct: 1 MNMPNERLKWLMLFAAVALIACGSQTLAANPPDADQKGPVFLKEPTNRIDFSNSTGAEIE 60
Query: 248 VSAVNAAGTEKPKIS---LD-ALIGKRIKEFVTSTTASLNIKN------SVRKDSGIYKI 297
A+G P+I D +G S+ L + +Y
Sbjct: 61 CK---ASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYAC 117
Query: 298 EAKNDYGIDMA-DIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKI 356
A+N +G ++ D+ V V + S + P
Sbjct: 118 LARNQFGSIISRDVHVRAVVAQYYEADVNKEHVIRGNSAVIKCLIP-------------- 163
Query: 357 TSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEV-----SPDGRIKFETSENQT 411
F W + +E DG+ S
Sbjct: 164 ---------------------SFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELH 202
Query: 412 IYRNKSAKRATDSGSYTIQLVNTVGSD---SASCKVYVVDKPSPPQGPLDVSDITPES 466
I + SY + + + + SA+ V+ +P P VS +
Sbjct: 203 I---REVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSAVPKVVSLAKFDM 257
|
| >2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291 | Back alignment and structure |
|---|
Score = 93.7 bits (233), Expect = 1e-21
Identities = 51/298 (17%), Positives = 89/298 (29%), Gaps = 62/298 (20%)
Query: 174 WSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTA-TASAHVT--- 229
++ G+ R VQ + L I + D G Y + G A+ +
Sbjct: 38 YNPQGEKIISTQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQ 97
Query: 230 ----GTEFTDNNVHEGKAYEYRVSAVNAAGTEKPKIS-------LDALIGKRIKEFVTST 278
+ +G+ E + + P +S + + R
Sbjct: 98 KLTFREVVSPQEFKQGEDAEVVCRV---SSSPAPAVSWLYHNEEVTTISDNRFA---MLA 151
Query: 279 TASLNIKNSVRKDSGIYKIEAKNDY-GIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSM 337
+L I N + D GIY+ E + + G +V+V+ P
Sbjct: 152 NNNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVP------------------- 192
Query: 338 SWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVS 397
P I+ + T GEE T + SG P+P W NG +
Sbjct: 193 ----------------PAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIE 236
Query: 398 PDGRIKFETSENQ-TIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQ 454
+ + + S + T+ +D G Y + N G D + V +
Sbjct: 237 ENEKYILKGSNTELTVRN----IINSDGGPYVCRATNKAGEDEKQAFLQVFVQHHHHH 290
|
| >2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291 | Back alignment and structure |
|---|
Score = 62.5 bits (152), Expect = 5e-11
Identities = 32/198 (16%), Positives = 60/198 (30%), Gaps = 42/198 (21%)
Query: 268 GKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYG-IDMADIEVVVVSKPGPPTGPID 326
+R+ + L I N+ +D+GIY+ +A + G A + + + K
Sbjct: 48 TQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKL-------- 99
Query: 327 YTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPT 386
+++ + GE+ + S P P
Sbjct: 100 -----------TFREV-------------------VSPQEFKQGEDAEVVCRVSSSPAPA 129
Query: 387 PIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYT-IQLVNTVGSDSASCKVY 445
W + +EV+ +F N + K +D G Y V G +
Sbjct: 130 VSWLYHNEEVTTISDNRFAMLANNNLQILNINK--SDEGIYRCEGRVEARGEIDFRDIIV 187
Query: 446 VVDKPSPPQGPLDVSDIT 463
+V+ P P + T
Sbjct: 188 IVNVPPAISMPQKSFNAT 205
|
| >2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291 | Back alignment and structure |
|---|
Score = 57.5 bits (139), Expect = 3e-09
Identities = 18/110 (16%), Positives = 39/110 (35%), Gaps = 4/110 (3%)
Query: 351 TGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQ 410
++T LS + + GE T G P+ + G+++ R+ + +
Sbjct: 2 MALLQVTISLS--KVELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQKEGVR 59
Query: 411 TIYRNKSAKRATDSGSYTIQLVNTVGSD-SASCKVYVVDKPSPPQGPLDV 459
+ +A D+G Y Q + G A+ + + K + +
Sbjct: 60 SRLTIYNA-NIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFREVVSPQ 108
|
| >3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772 | Back alignment and structure |
|---|
Score = 97.5 bits (242), Expect = 2e-21
Identities = 50/411 (12%), Positives = 105/411 (25%), Gaps = 83/411 (20%)
Query: 84 QFQVRAVNAAGPGEASKPTAPIVAKPKNLAPRIDRSTLNDVKIKAGQSFSFDVK------ 137
+ V N + S + +V P + + S ++ + G + +
Sbjct: 395 NYTVILTNPISKEKQSHVVSLVVYVPPQIGEKSLISPVDSYQ--YGTTQTLTCTVYAIPP 452
Query: 138 --EFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTTKSE 195
+ +A S E + ++ + + K++
Sbjct: 453 PHHIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVNKNQFALIEGKNK 512
Query: 196 TVLDIPFCSRSDTGHYSLTLENNLGTATASAHVT------GTEFTDNNVHEGKAYEYRVS 249
TV + + + + Y N +G T D E ++ +
Sbjct: 513 TVSTLVIQAANVSALYKCEAVNKVGRGERVISFHVTRGPEITLQPDMQPTEQESVSLWCT 572
Query: 250 AVNAAGTEKPKIS-------------------------LDALIGKRIKEFVTSTTASLNI 284
A + ++ + + T+ + +
Sbjct: 573 AD---RSTFENLTWYKLGPQPLPIHVGELPTPVCKNLDTLWKLNATMFSNSTNDILIMEL 629
Query: 285 KNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVD 344
KN+ +D G Y A++ + +
Sbjct: 630 KNASLQDQGDYVCLAQDRKTKKRHCVVRQLTVLERVA----------------------- 666
Query: 345 DGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKF 404
P IT +L + T GE ++ SG P P +W + + + D I
Sbjct: 667 ---------PTITGNLE--NQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVL 715
Query: 405 ETSENQ-TIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQ 454
+ TI R + D G YT Q + +G +
Sbjct: 716 KDGNRNLTIRRVRKE----DEGLYTCQACSVLGCAKVEAFFIIEGAQEKTN 762
|
| >3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772 | Back alignment and structure |
|---|
Score = 86.3 bits (213), Expect = 6e-18
Identities = 59/400 (14%), Positives = 98/400 (24%), Gaps = 93/400 (23%)
Query: 84 QFQVRAVNAAGPGEASKPTAPIVAKPKNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELS 143
++ + + +A D+ + + ++
Sbjct: 100 AYKCFYRETDL--ASVIYVYVQDYRSPFIASVSDQHGVVYITENKNKTVVI--------- 148
Query: 144 YTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFC 203
P N + + F+ G I + S+ IP
Sbjct: 149 ----PCLGSISNLNVSLCARYPEKRFVPDGNRI--------------SWDSKKGFTIPSY 190
Query: 204 SRSDTGHYSLTLENNLGTATASAHVT---GTEFTDNNVHEGKAYEYRV--SAV---NAAG 255
S G + N + + ++ G D + E V V A
Sbjct: 191 MISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTART 250
Query: 256 TEKPKISL-----------DALIGKRIKEFVTST----TASLNIKNSVRKDSGIYKIEAK 300
I L+ + +K S ++L I R D G+Y A
Sbjct: 251 ELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAAS 310
Query: 301 NDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDL 360
+ V V KP G
Sbjct: 311 SGLMTKKNSTFVRVHEKPFVAFGS---------------GME------------------ 337
Query: 361 SIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKR 420
+ GE I + G P P W NG + + IK TI
Sbjct: 338 --SLVEATVGERVRIPAKYLGYPPPEIKWYKNGIPLESNHTIKAGHVL--TIMEV----S 389
Query: 421 ATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQGPLDVS 460
D+G+YT+ L N + + S V +V P G +
Sbjct: 390 ERDTGNYTVILTNPISKEKQSHVVSLVVYVPPQIGEKSLI 429
|
| >3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772 | Back alignment and structure |
|---|
Score = 84.4 bits (208), Expect = 2e-17
Identities = 46/404 (11%), Positives = 86/404 (21%), Gaps = 99/404 (24%)
Query: 85 FQVRAVNAAGPGEASKPTAPIVAKPKNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSY 144
+ AA G S PR+ + + IKA + +
Sbjct: 12 WLCVETRAASVGLPSVSLDL---------PRL-SIQKDILTIKANTTLQITCR------- 54
Query: 145 TKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTTKSET---VLDIP 201
+ L+ W R +V L IP
Sbjct: 55 ---------------------GQRDLD--WLWPNNQSGSEQRVEVTECSDGLFCKTLTIP 91
Query: 202 FCSRSDTGHYSLTLENNLGTATASAHVTGTEFTDNNVHEGKAYEYRVSAV---------N 252
+DTG Y + +V + ++
Sbjct: 92 KVIGNDTGAYKCFYRETDLASVIYVYVQDYRSPFIASVSDQHGVVYITENKNKTVVIPCL 151
Query: 253 AAGTEKPKISLDALIGKRI----KEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMA 308
+ + KR + I + + +G+ EAK + +
Sbjct: 152 GSISNLNVSLCARYPEKRFVPDGNRISWDSKKGFTIPSYMISYAGMVFCEAKINDESYQS 211
Query: 309 DIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVL 368
+ +VVV + +P + +
Sbjct: 212 IMYIVVVVGYRIY---------------------------DVVLSPS-------HGIELS 237
Query: 369 AGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRAT------ 422
GE+ + + + +T
Sbjct: 238 VGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGV 297
Query: 423 ---DSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQGPLDVSDIT 463
D G YT + + + S V V +KP G S +
Sbjct: 298 TRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFVAFGSGMESLVE 341
|
| >3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772 | Back alignment and structure |
|---|
Score = 78.3 bits (192), Expect = 2e-15
Identities = 50/387 (12%), Positives = 99/387 (25%), Gaps = 40/387 (10%)
Query: 84 QFQVRAVNAAGPGEASKPTAPIVAKPKNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELS 143
A ++ IV + S + +++ G+ +
Sbjct: 197 MVFCEAKINDESYQS---IMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCT------ 247
Query: 144 YTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFC 203
A N + + + + + ++++ S L I
Sbjct: 248 -------ART-ELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLS--TLTIDGV 297
Query: 204 SRSDTGHYSLTLENNLGTATASAHVTGTEFTDNNVHEGKAYEYRVSA-------VNAAGT 256
+RSD G Y+ + L T S V E G + G
Sbjct: 298 TRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFVAFGSGMESLVEATVGERVRIPAKYLGY 357
Query: 257 EKPKIS--LDALIGKRIKE-FVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDM--ADIE 311
P+I + G ++ L I +D+G Y + N + +
Sbjct: 358 PPPEIKWYKN---GIPLESNHTIKAGHVLTIMEVSERDTGNYTVILTNPISKEKQSHVVS 414
Query: 312 VVVVSKPGPPTGPIDYTTVT-PESVSMSWKPPVDDGGTPITGAPKIT-SDLSIRDMTVLA 369
+VV P + + + + V P I +
Sbjct: 415 LVVYVPPQIGEKSLISPVDSYQYGTTQTLTCTVYAIPPPHH----IHWYWQLEEECANEP 470
Query: 370 GEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTI 429
+ ++T P+ + G+++ + + A S Y
Sbjct: 471 SQAVSVTNPYPCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKTVSTLVIQAANVSALYKC 530
Query: 430 QLVNTVGSDSASCKVYVVDKPSPPQGP 456
+ VN VG +V P P
Sbjct: 531 EAVNKVGRGERVISFHVTRGPEITLQP 557
|
| >3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772 | Back alignment and structure |
|---|
Score = 64.8 bits (157), Expect = 3e-11
Identities = 40/333 (12%), Positives = 64/333 (19%), Gaps = 107/333 (32%)
Query: 190 QTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVT-------------------- 229
T K+ VL I S DTG+Y++ L N + S V+
Sbjct: 375 HTIKAGHVLTIMEVSERDTGNYTVILTNPISKEKQSHVVSLVVYVPPQIGEKSLISPVDS 434
Query: 230 ----------------------------GTEFTDNNVHEGKAYEYRVSAVNAAGTEKPKI 261
E + + +
Sbjct: 435 YQYGTTQTLTCTVYAIPPPHHIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGG 494
Query: 262 SLDALIGKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPP 321
+ + + + S +YK EA N G I V P
Sbjct: 495 NKIEVNKNQFALIEGKNKTVSTLVIQAANVSALYKCEAVNKVGRGERVISFHVTRGPEIT 554
Query: 322 TGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSG 381
P DM E ++
Sbjct: 555 LQP---------------------------------------DMQPTEQESVSLWCTADR 575
Query: 382 RPKPTPIWTVNGDEVSPDGR----------IKFETSENQTIYRNKSAKRAT--------- 422
W G + P + N T++ N +
Sbjct: 576 STFENLTWYKLGPQPLPIHVGELPTPVCKNLDTLWKLNATMFSNSTNDILIMELKNASLQ 635
Query: 423 DSGSYTIQLVNTVGSDSASCKVYV-VDKPSPPQ 454
D G Y + + V + P
Sbjct: 636 DQGDYVCLAQDRKTKKRHCVVRQLTVLERVAPT 668
|
| >3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772 | Back alignment and structure |
|---|
Score = 62.9 bits (152), Expect = 1e-10
Identities = 19/254 (7%), Positives = 46/254 (18%), Gaps = 40/254 (15%)
Query: 206 SDTGHYSLTLENNLGTATASAHVTGTEFT----DNNVHEGKAYEYRVSAVNAAGTEKPKI 261
+ S + + + + P
Sbjct: 7 LAVALWLCVETRAASVGLPSVSLDLPRLSIQKDILTIKANTTLQITCRGQRDLDWLWPNN 66
Query: 262 SLDALIGKRIKEFVT-STTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGP 320
+ + E +L I + D+G YK + + + V P
Sbjct: 67 QSGSEQRVEVTECSDGLFCKTLTIPKVIGNDTGAYKCFYRETDLASVIYVYVQDYRSPFI 126
Query: 321 PTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFS 380
+ + V +T + I S
Sbjct: 127 ASVSDQHGVV---------------------------------YITENKNKTVVIPCLGS 153
Query: 381 GRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSA 440
+ ++ + + + +G + S +
Sbjct: 154 ISNLNVSLCARYPEKRFVPDGNRISWDSKKGFTIPSY--MISYAGMVFCEAKINDESYQS 211
Query: 441 SCKVYVVDKPSPPQ 454
+ VV
Sbjct: 212 IMYIVVVVGYRIYD 225
|
| >3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772 | Back alignment and structure |
|---|
Score = 54.4 bits (130), Expect = 7e-08
Identities = 15/183 (8%), Positives = 42/183 (22%), Gaps = 49/183 (26%)
Query: 284 IKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPV 343
+++ V ++ + + + + +
Sbjct: 1 MQSKVLLAVALWLCVETRAASVGLPSVSLDL----------------------------- 31
Query: 344 DDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIK 403
P+++ +T+ A IT R + W ++ + R++
Sbjct: 32 ----------PRLSIQKD--ILTIKANTTLQITC----RGQRDLDWLWPNNQSGSEQRVE 75
Query: 404 FETSENQTIYRN---KSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQGPLDVS 460
+ + D+G+Y T + V P
Sbjct: 76 VTECSDGLFCKTLTIPKV-IGNDTGAYKCFYRETDLASVIYVYVQDYRSPFIASVSDQHG 134
Query: 461 DIT 463
+
Sbjct: 135 VVY 137
|
| >2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312 | Back alignment and structure |
|---|
Score = 92.4 bits (229), Expect = 6e-21
Identities = 37/301 (12%), Positives = 82/301 (27%), Gaps = 54/301 (17%)
Query: 174 WSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVTG--- 230
WS + + R +V++ ++T + D G YS + + G A++
Sbjct: 36 WSKDYVSTEDSPRLEVESKGNKTKMTFKDLGMDDLGIYSCDVTDTDGIASSYLIDEEELK 95
Query: 231 ----------------TEFTDNNVHEGKAYEYRVSAVNAAGTEKPKIS-------LDALI 267
+ E + R + K++ +
Sbjct: 96 RLLALSHEHKFPTVPVKSELAVEILEKG--QVRFWMQAEKLSGNAKVNYIFNEKEIFEGP 153
Query: 268 GKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDY 327
++ + + ++ +D G Y + ++ + + + +V
Sbjct: 154 KYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQK----- 208
Query: 328 TTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTP 387
+ P L V + + K T
Sbjct: 209 ------------EAEFQRQEWIRKQGPHFVEYL---SWEVTGECNVLLKCKVANIKKETH 253
Query: 388 I-WTVNGDEVSPDGRIKFETSENQ-TIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVY 445
I W + E+S D + F+ I + D+G Y + L + G D + K+
Sbjct: 254 IVWYKDEREISVDEKHDFKDGICTLLI---TEFSKK-DAGIYEVILKDDRGKDKSRLKLV 309
Query: 446 V 446
Sbjct: 310 D 310
|
| >2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312 | Back alignment and structure |
|---|
Score = 68.5 bits (167), Expect = 6e-13
Identities = 24/212 (11%), Positives = 50/212 (23%), Gaps = 28/212 (13%)
Query: 268 GKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDY 327
R++ + K+ D GIY + + GI + + K
Sbjct: 46 SPRLEVESKGNKTKMTFKDLGMDDLGIYSCDVTDTDGIASSYLIDEEELKRLLALSHEHK 105
Query: 328 TTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITV-PFSGRPKPT 386
P + + +L + +
Sbjct: 106 FPTVPVKSEL--------------------------AVEILEKGQVRFWMQAEKLSGNAK 139
Query: 387 PIWTVNGDEVSPDGRIKFETSENQTIYRNKSAK-RATDSGSYTIQLVNTVGSDSASCKVY 445
+ N E+ + K N I K + D G+YT QL + ++ ++ +
Sbjct: 140 VNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLV 199
Query: 446 VVDKPSPPQGPLDVSDITPESCSLSWKPPLDD 477
+ + L
Sbjct: 200 GDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSW 231
|
| >3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573 | Back alignment and structure |
|---|
Score = 93.4 bits (232), Expect = 3e-20
Identities = 33/149 (22%), Positives = 61/149 (40%), Gaps = 4/149 (2%)
Query: 12 DEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGN-WEKAVVVPAGET 70
EP P + + V L W PP DGGS +T Y +E ++ G W T
Sbjct: 8 PEPEPPRFPIIENILDEAVILSWKPPALDGGSLVTNYTIEKREAMGGSWSPCAKSR--YT 65
Query: 71 SCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPI-VAKPKNLAPRIDRSTLNDVKIKAG 129
T+ GL G+ Y+F++ A N G + +PTAP+ + + R ++
Sbjct: 66 YTTIEGLRAGKQYEFRIIAENKHGQSKPCEPTAPVLIPGDERKRRRGYDVDEQGKIVRGK 125
Query: 130 QSFSFDVKEFRELSYTKSPLRALGVRANS 158
+ S + + + + + + ++ +
Sbjct: 126 GTVSSNYDNYVFDIWKQYYPQPVEIKHDH 154
|
| >3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573 | Back alignment and structure |
|---|
Score = 72.2 bits (177), Expect = 1e-13
Identities = 24/50 (48%), Positives = 33/50 (66%), Gaps = 1/50 (2%)
Query: 443 KVYVVDKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYES 492
V V +P PP+ P+ + +I E+ LSWKPP DGGS +TNY +EK E+
Sbjct: 3 MVADVPEPEPPRFPI-IENILDEAVILSWKPPALDGGSLVTNYTIEKREA 51
|
| >3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573 | Back alignment and structure |
|---|
Score = 53.3 bits (128), Expect = 1e-07
Identities = 14/86 (16%), Positives = 27/86 (31%), Gaps = 3/86 (3%)
Query: 362 IRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQ-TIYRNKSAKR 420
V G+ P W + E+ + + N + N+ +
Sbjct: 489 PYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTINRV--K 546
Query: 421 ATDSGSYTIQLVNTVGSDSASCKVYV 446
D G YT++ N+ G+ + V
Sbjct: 547 GDDKGEYTVRAKNSYGTKEEIVFLNV 572
|
| >3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573 | Back alignment and structure |
|---|
Score = 49.1 bits (117), Expect = 2e-06
Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 312 VVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITG 352
V V +P PP PI + E+V +SWKPP DGG+ +T
Sbjct: 4 VADVPEPEPPRFPI-IENILDEAVILSWKPPALDGGSLVTN 43
|
| >1x5g_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 116 | Back alignment and structure |
|---|
Score = 85.1 bits (211), Expect = 4e-20
Identities = 27/99 (27%), Positives = 41/99 (41%), Gaps = 3/99 (3%)
Query: 4 SVLIKNPFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAV 63
V + PG +L A + + W P+S G I Y + +K + E+ V
Sbjct: 8 RVETQPEVQLPGPAPNLRAYAASPTSITVTWETPVSGNG-EIQNYKLYYMEKGTDKEQDV 66
Query: 64 VVPAGETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPT 102
V S T+ GL + Y F+V A N GPG ++
Sbjct: 67 DVS--SHSYTINGLKKYTEYSFRVVAYNKHGPGVSTPDV 103
|
| >1x5g_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 116 | Back alignment and structure |
|---|
Score = 47.7 bits (114), Expect = 4e-07
Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 5/63 (7%)
Query: 436 GSDSASCKVYV---VDKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYES 492
GS +S +V V P P L +P S +++W+ P+ G I NY + E
Sbjct: 1 GSSGSSGRVETQPEVQLPGPAPN-LRAYAASPTSITVTWETPVSGNG-EIQNYKLYYMEK 58
Query: 493 ATG 495
T
Sbjct: 59 GTD 61
|
| >2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304 | Back alignment and structure |
|---|
Score = 89.9 bits (223), Expect = 4e-20
Identities = 51/313 (16%), Positives = 91/313 (29%), Gaps = 79/313 (25%)
Query: 174 WSINGQ-VCQIGGRADVQTTKSETVLDI-PFCSRSDTGHYSLTLENNLGTATASAHVT-- 229
W+ G+ V + VL I P + D Y +N++G T A +T
Sbjct: 40 WNKKGKKVNSQRFETIEFDESAGAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVL 99
Query: 230 ------------GTEFTDNNVHEGKAYEYRVSAV---NAAGTEKPKIS--------LDAL 266
V + +A A+G P+I+ +
Sbjct: 100 REDQLPSGFPNIDMGPQLKVVERTR------TATMLCAASGNPDPEITWFKDFLPVDPSA 153
Query: 267 IGKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYG-IDMADIEVVVVSKPGPPTGPI 325
RIK+ + +L I++S D G Y+ A N G + + V + P
Sbjct: 154 SNGRIKQL---RSGALQIESSEETDQGKYECVATNSAGVRYSSPANLYVRVQNVAPR--- 207
Query: 326 DYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKP 385
+ P ++ G IT G P P
Sbjct: 208 ------------------------FSILPM--------SHEIMPGGNVNITCVAVGSPMP 235
Query: 386 TPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVY 445
W ++++P+ + + DS +YT ++++G A ++
Sbjct: 236 YVKWMQGAEDLTPEDDMPVGR---NVL----ELTDVKDSANYTCVAMSSLGVIEAVAQIT 288
Query: 446 VVDKPSPPQGPLD 458
V P
Sbjct: 289 VKSLPKAGTKHHH 301
|
| >2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304 | Back alignment and structure |
|---|
Score = 69.5 bits (170), Expect = 3e-13
Identities = 42/200 (21%), Positives = 61/200 (30%), Gaps = 43/200 (21%)
Query: 269 KRIKEFVTSTTASLNIKNSVRK-DSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDY 327
EF S A L I+ D +Y+ A+N G ++ V+ + P+G
Sbjct: 52 FETIEFDESAGAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGF--- 108
Query: 328 TTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTP 387
P I + V T+ SG P P
Sbjct: 109 --------------------------PNIDMGP--QLKVVERTRTATMLCAASGNPDPEI 140
Query: 388 IWTVNGDEVSP---DGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGS-DSASCK 443
W + V P +GRIK S I + TD G Y N+ G S+
Sbjct: 141 TWFKDFLPVDPSASNGRIKQLRSGALQI----ESSEETDQGKYECVATNSAGVRYSSPAN 196
Query: 444 VYVVDKPSPP---QGPLDVS 460
+YV + P P+
Sbjct: 197 LYVRVQNVAPRFSILPMSHE 216
|
| >2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304 | Back alignment and structure |
|---|
Score = 62.9 bits (153), Expect = 5e-11
Identities = 22/105 (20%), Positives = 40/105 (38%), Gaps = 3/105 (2%)
Query: 353 APKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQT- 411
P+ + +D ++G + +G PKP W G +V+ E E+
Sbjct: 6 PPRFIKEP--KDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGA 63
Query: 412 IYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQGP 456
+ R + + D Y N+VG + K+ V+ + P G
Sbjct: 64 VLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGF 108
|
| >2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304 | Back alignment and structure |
|---|
Score = 57.1 bits (138), Expect = 3e-09
Identities = 26/167 (15%), Positives = 46/167 (27%), Gaps = 19/167 (11%)
Query: 174 WSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGT---ATASAHVTG 230
W + L I +D G Y N+ G + A+ +V
Sbjct: 142 WFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYECVATNSAGVRYSSPANLYVRV 201
Query: 231 T--------EFTDNNVHEGKAYEYRVSAVNAAGTEKPKIS--LDALIGKRIKEFVTSTTA 280
+ + G AV G+ P + + +
Sbjct: 202 QNVAPRFSILPMSHEIMPGGNVNITCVAV---GSPMPYVKWMQG---AEDLTPEDDMPVG 255
Query: 281 SLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDY 327
++ + KDS Y A + G+ A ++ V S P T +
Sbjct: 256 RNVLELTDVKDSANYTCVAMSSLGVIEAVAQITVKSLPKAGTKHHHH 302
|
| >2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194 | Back alignment and structure |
|---|
Score = 86.7 bits (215), Expect = 7e-20
Identities = 35/201 (17%), Positives = 69/201 (34%), Gaps = 43/201 (21%)
Query: 253 AAGTEKPKIS-------LDALIGKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGI 305
+G P++S + ++ + A L I + +SG Y ++A N G
Sbjct: 29 ISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAKLTIPAVTKANSGRYSLKATNGSGQ 88
Query: 306 DMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDM 365
+ E++V ++ PP + M
Sbjct: 89 ATSTAELLVKAETAPPN---------------------------FVQRL--------QSM 113
Query: 366 TVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSG 425
TV G + + V +G P P + +G E+ + + A DSG
Sbjct: 114 TVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPE-DSG 172
Query: 426 SYTIQLVNTVGSDSASCKVYV 446
+Y++ N+VG +++ ++ V
Sbjct: 173 TYSVNATNSVGRATSTAELLV 193
|
| >2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194 | Back alignment and structure |
|---|
Score = 68.2 bits (167), Expect = 1e-13
Identities = 25/103 (24%), Positives = 43/103 (41%), Gaps = 3/103 (2%)
Query: 353 APKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTI 412
AP T L + + VL G T SG P P W +G +S + S +
Sbjct: 5 APTFTQPL--QSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGR 62
Query: 413 YRNK-SAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQ 454
+ A +SG Y+++ N G +++ ++ V + +PP
Sbjct: 63 AKLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAPPN 105
|
| >2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194 | Back alignment and structure |
|---|
Score = 57.8 bits (140), Expect = 6e-10
Identities = 38/158 (24%), Positives = 59/158 (37%), Gaps = 20/158 (12%)
Query: 174 WSINGQVCQIGGRADVQTTKSE--TVLDIPFCSRSDTGHYSLTLENNLGTATASAHVT-- 229
W +GQV VQ + S+ L IP +++++G YSL N G AT++A +
Sbjct: 39 WFRDGQVISTSTLPGVQISFSDGRAKLTIPAVTKANSGRYSLKATNGSGQATSTAELLVK 98
Query: 230 --------GTEFTDNNVHEGKAYEYRVSAVNAAGTEKPKISL---DALI--GKRIKEFVT 276
V +G +V G P + A I +
Sbjct: 99 AETAPPNFVQRLQSMTVRQGSQVRLQVRVT---GIPTPVVKFYRDGAEIQSSLDFQISQE 155
Query: 277 STTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVV 314
SL I + +DSG Y + A N G + E++V
Sbjct: 156 GDLYSLLIAEAYPEDSGTYSVNATNSVGRATSTAELLV 193
|
| >2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194 | Back alignment and structure |
|---|
Score = 44.7 bits (106), Expect = 2e-05
Identities = 27/146 (18%), Positives = 52/146 (35%), Gaps = 30/146 (20%)
Query: 84 QFQVRAVNAAGPGEASKPTAPIVAKPKNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELS 143
++ ++A N +G +A+ TA ++ K + P L + ++ G V
Sbjct: 77 RYSLKATNGSG--QATS-TAELLVKAETAPPNF-VQRLQSMTVRQGSQVRLQV------- 125
Query: 144 YTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFC 203
R G+ K + + +G Q + L I
Sbjct: 126 ------RVTGIPTPVVK-FYR------------DGAEIQSSLDFQISQEGDLYSLLIAEA 166
Query: 204 SRSDTGHYSLTLENNLGTATASAHVT 229
D+G YS+ N++G AT++A +
Sbjct: 167 YPEDSGTYSVNATNSVGRATSTAELL 192
|
| >3fl7_A Ephrin receptor; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase, glycoprotein; HET: NAG; 2.50A {Homo sapiens} PDB: 2x10_A* 2x11_A 3mx0_A* 3mbw_A* Length = 536 | Back alignment and structure |
|---|
Score = 90.6 bits (224), Expect = 2e-19
Identities = 20/99 (20%), Positives = 32/99 (32%), Gaps = 2/99 (2%)
Query: 4 SVLIKNPFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAV 63
S + +P + + + W+ P + Y V + K +
Sbjct: 431 SFRTASVSINQTEPPKVRLEGRSTTSLSVSWSIPPPQQS-RVWKYEVTYRKKGDSNSY-N 488
Query: 64 VVPAGETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPT 102
V S T+ L TY QV+A+ G G SK
Sbjct: 489 VRRTEGFSVTLDDLAPDTTYLVQVQALTQEGQGAGSKVH 527
|
| >3fl7_A Ephrin receptor; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase, glycoprotein; HET: NAG; 2.50A {Homo sapiens} PDB: 2x10_A* 2x11_A 3mx0_A* 3mbw_A* Length = 536 | Back alignment and structure |
|---|
Score = 82.5 bits (203), Expect = 6e-17
Identities = 36/264 (13%), Positives = 66/264 (25%), Gaps = 42/264 (15%)
Query: 240 EGKAYEYRVSAVNAAGTEKPKISLDALIGKRIKEFVTSTTASLNIKNSVRKDSGIYKIEA 299
+G+ + AG EK + + A K + + ++++ G E
Sbjct: 255 DGEWLVPIGQCLCQAGYEKVEDACQACSPGFFKFEASESPCLECPEHTLPSPEGATSCEC 314
Query: 300 KNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSD 359
+ + D + ++P + V + W PP D GG
Sbjct: 315 EEGFFRAPQDPASMPCTRPPSAPHYLTAV-GMGAKVELRWTPPQDSGGREDIV------- 366
Query: 360 LSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETS------ENQTIY 413
+++T S TS E Y
Sbjct: 367 -------------YSVTCEQCWPESGECGPCEASVRYSEPPHGLTRTSVTVSDLEPHMNY 413
Query: 414 RNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQGPLD--VSDITPESCSLSW 471
++T++ N V S P + + S S+SW
Sbjct: 414 ------------TFTVEARNGVSGLVTSRSFRTASVSINQTEPPKVRLEGRSTTSLSVSW 461
Query: 472 KPPLDDGGSPITNYVVEKYESATG 495
P + Y V +
Sbjct: 462 SIPPPQQS-RVWKYEVTYRKKGDS 484
|
| >3fl7_A Ephrin receptor; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase, glycoprotein; HET: NAG; 2.50A {Homo sapiens} PDB: 2x10_A* 2x11_A 3mx0_A* 3mbw_A* Length = 536 | Back alignment and structure |
|---|
Score = 74.0 bits (181), Expect = 4e-14
Identities = 27/122 (22%), Positives = 32/122 (26%), Gaps = 11/122 (9%)
Query: 10 PFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMK---------DKTGNWE 60
P P V+L+WTPP GG Y V +
Sbjct: 329 PCTRPPSAPHYLTAVGMGAKVELRWTPPQDSGGREDIVYSVTCEQCWPESGECGPCEASV 388
Query: 61 KAVVVPAG--ETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAPRIDR 118
+ P G TS TV L Y F V A N S+ P R
Sbjct: 389 RYSEPPHGLTRTSVTVSDLEPHMNYTFTVEARNGVSGLVTSRSFRTASVSINQTEPPKVR 448
Query: 119 ST 120
Sbjct: 449 LE 450
|
| >3fl7_A Ephrin receptor; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase, glycoprotein; HET: NAG; 2.50A {Homo sapiens} PDB: 2x10_A* 2x11_A 3mx0_A* 3mbw_A* Length = 536 | Back alignment and structure |
|---|
Score = 60.9 bits (147), Expect = 4e-10
Identities = 21/161 (13%), Positives = 38/161 (23%), Gaps = 21/161 (13%)
Query: 376 TVPFSGRPKPTPIWTVNGDEVSPDGRIK--------------------FETSENQTIYRN 415
V G +P V+G+ + P G+ +
Sbjct: 239 AVVPPGGEEPRMHCAVDGEWLVPIGQCLCQAGYEKVEDACQACSPGFFKFEASESPCLEC 298
Query: 416 KSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQGPLDVSDITPESCSLSWKPPL 475
+ G+ + + +P L + L W PP
Sbjct: 299 PEHTLPSPEGATSCECEEGFFRAPQDPASMPCTRPPSAPHYL-TAVGMGAKVELRWTPPQ 357
Query: 476 DDGGSPITNYVVEKYESATGVSDLFISKSEVKTGSLMTSKT 516
D GG Y V + + ++ V+ T
Sbjct: 358 DSGGREDIVYSVTCEQCWPESGECGPCEASVRYSEPPHGLT 398
|
| >1x5l_A Ephrin type-A receptor 8; FN3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 111 | Back alignment and structure |
|---|
Score = 82.4 bits (204), Expect = 2e-19
Identities = 28/98 (28%), Positives = 38/98 (38%), Gaps = 1/98 (1%)
Query: 12 DEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVVVPAGETS 71
P + + + V L W P G I Y ++ +K + + A T
Sbjct: 9 AAPSQVVVIRQERAGQTSVSLLWQEPEQPNG-IILEYEIKYYEKDKEMQSYSTLKAVTTR 67
Query: 72 CTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKP 109
TV GL G Y FQVRA +AG G S+ KP
Sbjct: 68 ATVSGLKPGTRYVFQVRARTSAGCGRFSQAMEVETGKP 105
|
| >2dmk_A Midline 2 isoform 2; midline defect 2, tripartite motif protein 1, midin-2, ring finger protein 60, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 127 | Back alignment and structure |
|---|
Score = 83.0 bits (205), Expect = 2e-19
Identities = 24/118 (20%), Positives = 38/118 (32%), Gaps = 14/118 (11%)
Query: 9 NPFDEPGKPT-DLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKA----- 62
+ P P+ E D + + W I+ Y ++ TG
Sbjct: 11 DYLTAPNPPSIREELCTASHDTITVHWISD---DEFSISSYELQYTIFTGQANFISLYNS 67
Query: 63 -----VVVPAGETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAPR 115
+V + TV GL G Y F V+A+N AG + ++P P
Sbjct: 68 VDSWMIVPNIKQNHYTVHGLQSGTRYIFIVKAINQAGSRNSEPTRLKTNSQPFKSGPS 125
|
| >2dmk_A Midline 2 isoform 2; midline defect 2, tripartite motif protein 1, midin-2, ring finger protein 60, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 127 | Back alignment and structure |
|---|
Score = 54.5 bits (131), Expect = 2e-09
Identities = 8/55 (14%), Positives = 23/55 (41%), Gaps = 3/55 (5%)
Query: 437 SDSASCKVYVVDKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYE 491
S S+ + + P+PP ++ + ++ ++ W I++Y ++
Sbjct: 3 SGSSGEGLDYLTAPNPPSIREELCTASHDTITVHWISD---DEFSISSYELQYTI 54
|
| >2dmk_A Midline 2 isoform 2; midline defect 2, tripartite motif protein 1, midin-2, ring finger protein 60, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 127 | Back alignment and structure |
|---|
Score = 39.5 bits (92), Expect = 4e-04
Identities = 6/39 (15%), Positives = 17/39 (43%), Gaps = 3/39 (7%)
Query: 314 VVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITG 352
++ P PP+ + T + +++++ W I+
Sbjct: 12 YLTAPNPPSIREELCTASHDTITVHWISD---DEFSISS 47
|
| >2djs_A Ephrin type-B receptor 1; tyrosine-protein kinase receptor EPH-2, NET, HEK6, ELK, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 108 | Back alignment and structure |
|---|
Score = 81.7 bits (202), Expect = 5e-19
Identities = 21/91 (23%), Positives = 31/91 (34%), Gaps = 1/91 (1%)
Query: 12 DEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVVVPAGETS 71
P + + L W P G I Y + +K N + + + +
Sbjct: 6 SGPSTVPIMHQVSATMRSITLSWPQPEQPNG-IILDYEIRYYEKEHNEFNSSMARSQTNT 64
Query: 72 CTVPGLIEGETYQFQVRAVNAAGPGEASKPT 102
+ GL G Y QVRA AG G+ S
Sbjct: 65 ARIDGLRPGMVYVVQVRARTVAGYGKFSGKM 95
|
| >2ed8_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 106 | Back alignment and structure |
|---|
Score = 81.5 bits (202), Expect = 5e-19
Identities = 22/89 (24%), Positives = 37/89 (41%), Gaps = 3/89 (3%)
Query: 14 PGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVVVPAGETSCT 73
PG +L+A + + W PP G P+ GY + + + E+ + V S
Sbjct: 8 PGPVENLQAVSTSPTSILITWEPPAYANG-PVQGYRLFCTEVSTGKEQNIEVD--GLSYK 64
Query: 74 VPGLIEGETYQFQVRAVNAAGPGEASKPT 102
+ GL + Y + A N GPG ++
Sbjct: 65 LEGLKKFTEYSLRFLAYNRYGPGVSTDDI 93
|
| >2ed8_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 106 | Back alignment and structure |
|---|
Score = 45.3 bits (108), Expect = 2e-06
Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Query: 450 PSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATG 495
P P + L +P S ++W+PP G P+ Y + E +TG
Sbjct: 8 PGPVEN-LQAVSTSPTSILITWEPPAYANG-PVQGYRLFCTEVSTG 51
|
| >3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane, disulfide bond, glycoprotein, immunoglobulin domain, membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A {Homo sapiens} Length = 589 | Back alignment and structure |
|---|
Score = 88.5 bits (219), Expect = 8e-19
Identities = 63/533 (11%), Positives = 117/533 (21%), Gaps = 159/533 (29%)
Query: 14 PGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVVVPAGETSCT 73
P KP +L + + +W + T + ++ + T + TSCT
Sbjct: 103 PEKPKNLSCIVNEGKKMRCEWDGG-RETHLE-TNFTLKSEWATHKFADCKAKRDTPTSCT 160
Query: 74 VP-GLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAPRIDRSTLNDVKIKAGQSF 132
V + + V A NA G + V K K P
Sbjct: 161 VDYSTVYFVNIEVWVEAENALGKVTSDHINFDPVYKVKPNPPHN---------------- 204
Query: 133 SFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTT 192
L + S+ + + P + I
Sbjct: 205 ----------------LSVINSEELSSILKLTWTNPSIKSV---IILKYNIQ-------- 237
Query: 193 KSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVTGTEFTDNNVHEGKAYEYRVSAVN 252
+ ++ + + E+ T + FT ++ Y +R+ +
Sbjct: 238 ---------YRTKDASTWSQIPPEDTASTRS--------SFTVQDLKPFTEYVFRIRCMK 280
Query: 253 AAGT----------------EKPKISLDALIGKRIKEFVTSTTASL-------------- 282
G ++P + T L
Sbjct: 281 EDGKGYWSDWSEEASGITYEDRPSKAPSFWYKIDPSHTQGYRTVQLVWKTLPPFEANGKI 340
Query: 283 ----------------------NIKNSVRKDSGIYKIEAKNDYGI-DMADIEVVVVSKPG 319
+ ++ D + + +N G D A + +
Sbjct: 341 LDYEVTLTRWKSHLQNYTVNATKLTVNLTNDRYLATLTVRNLVGKSDAAVLTIPACDFQA 400
Query: 320 PPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPF 379
+ + W P + I
Sbjct: 401 THPVMDLKAFPKDNMLWVEWTTPRESVKKYILE--------------------------- 433
Query: 380 SGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQL--VNTVG- 436
W V D+ + E Y + + Y I + V G
Sbjct: 434 ---------WCVLSDKAPCITDWQQEDGTVHRTYLRGNLAESKC---YLITVTPVYADGP 481
Query: 437 SDSASCKVYVVDKPSPPQGPLDVSDITPESCSLSWK-PPLDDGGSPITNYVVE 488
S K Y+ P + + L W P+D I NY +
Sbjct: 482 GSPESIKAYLKQAPPSKGPTVRTKKVGKNEAVLEWDQLPVDVQNGFIRNYTIF 534
|
| >3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane, disulfide bond, glycoprotein, immunoglobulin domain, membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A {Homo sapiens} Length = 589 | Back alignment and structure |
|---|
Score = 86.6 bits (214), Expect = 3e-18
Identities = 20/100 (20%), Positives = 33/100 (33%), Gaps = 2/100 (2%)
Query: 4 SVLIKNPFDEPGKPTDLEATDWDKDHVDLQWT-PPISDGGSPITGYVVEMKDKTGNWEKA 62
S+ P K + K+ L+W P+ I Y + + GN
Sbjct: 486 SIKAYLKQAPPSKGPTVRTKKVGKNEAVLEWDQLPVDVQNGFIRNYTIFYRTIIGNETA- 544
Query: 63 VVVPAGETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPT 102
V V + T T+ L Y ++ A G + + T
Sbjct: 545 VNVDSSHTEYTLSSLTSDTLYMVRMAAYTDEGGKDGPEFT 584
|
| >3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane, disulfide bond, glycoprotein, immunoglobulin domain, membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A {Homo sapiens} Length = 589 | Back alignment and structure |
|---|
Score = 85.4 bits (211), Expect = 8e-18
Identities = 53/379 (13%), Positives = 97/379 (25%), Gaps = 63/379 (16%)
Query: 2 DHSVLIKNPFDEPGKPTDLEATD--WDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNW 59
DH +P P +L + + L WT P S I Y ++ + K +
Sbjct: 187 DHINFDPVYKVKPNPPHNLSVINSEELSSILKLTWTNP-SIKSVIILKYNIQYRTKDAST 245
Query: 60 EKAV---VVPAGETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAPRI 116
+ + +S TV L Y F++R + G G S + P
Sbjct: 246 WSQIPPEDTASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASGITYEDRPSK 305
Query: 117 DRSTLNDVKIKAGQ-SFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWS 175
S + Q + + W L N
Sbjct: 306 APSFWYKIDPSHTQGYRTVQLV------------------------WKTLPPFEAN--GK 339
Query: 176 INGQVCQIGGRADVQTTKSETVLDIPF--CSRSDTGHYSLTLENNLGTATASAHVTGTEF 233
I ++ ++ TV +D +LT+ N +G + A+
Sbjct: 340 ILD--YEVTLTRWKSHLQNYTVNATKLTVNLTNDRYLATLTVRNLVGKSDAAVLTIPAC- 396
Query: 234 TDNNVHEGKAYEYRVSAVNAAGT-----EKPKISLDA-LIGKRIKEFVTSTTASLNIKNS 287
+ + A P+ S+ ++ + ++
Sbjct: 397 ----DFQATHPVMDLKAFPKDNMLWVEWTTPRESVKKYILEWCVLSDKAPCITDWQQEDG 452
Query: 288 VRKDSGI---------YKIE--AKNDYGIDMADIEVVVVSKPGPPTGP--IDYTTVTPES 334
+ + Y I G + + K PP+ + V
Sbjct: 453 TVHRTYLRGNLAESKCYLITVTPVYADGPGSPE-SIKAYLKQAPPSKGPTVRTKKVGKNE 511
Query: 335 VSMSWK-PPVDDGGTPITG 352
+ W PVD I
Sbjct: 512 AVLEWDQLPVDVQNGFIRN 530
|
| >3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane, disulfide bond, glycoprotein, immunoglobulin domain, membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A {Homo sapiens} Length = 589 | Back alignment and structure |
|---|
Score = 66.6 bits (162), Expect = 8e-12
Identities = 26/252 (10%), Positives = 59/252 (23%), Gaps = 48/252 (19%)
Query: 249 SAVNAAGTEKPKIS--LDALIGKRIKEFVTSTTASLNIKNSVRKDSGIY--KIEAKNDYG 304
++ I + + + + + TAS + + I
Sbjct: 30 KCMDYFHVNANYIVWKTNHFTIPKEQYTIINRTASSVTFTDIASLNIQLTCNILTFGQLE 89
Query: 305 IDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRD 364
++ I ++ P P + + + W +
Sbjct: 90 QNVYGITIISGLPPEKPKN-LSCIVNEGKKMRCEWDGGRETHL-ETN------------- 134
Query: 365 MTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDS 424
FT+ ++ +P ++
Sbjct: 135 --------FTLKSEWATHK----FADCKAKRDTPTSCTVDYSTVYFVNIE---------- 172
Query: 425 GSYTIQLVNTVG---SDSASCKVYVVDKPSPPQGP-LDVSDITPESCSLSWKPPLDDGGS 480
++ N +G SD + KP+PP + S+ L+W P
Sbjct: 173 --VWVEAENALGKVTSDHINFDPVYKVKPNPPHNLSVINSEELSSILKLTWTNP-SIKSV 229
Query: 481 PITNYVVEKYES 492
I Y ++
Sbjct: 230 IILKYNIQYRTK 241
|
| >3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane, disulfide bond, glycoprotein, immunoglobulin domain, membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A {Homo sapiens} Length = 589 | Back alignment and structure |
|---|
Score = 61.2 bits (148), Expect = 4e-10
Identities = 36/320 (11%), Positives = 68/320 (21%), Gaps = 29/320 (9%)
Query: 210 HYSLTLENNLGTATASAHVTGTEFTDNNVHEGKAYEYRVSAVNAAGTEKPKISLDALIGK 269
T + V+ E V A NA G + K
Sbjct: 138 KSEWATHKFADCKAKRDTPTSCTVDYSTVYFVN-IEVWVEAENALGKVTSDHINFDPVYK 196
Query: 270 RI--------KEFVTSTTASLNI--KNSVRKDSGI--YKIEAKNDYGIDMADIEVVVVSK 317
++ L + N K I Y I+ + + I +
Sbjct: 197 VKPNPPHNLSVINSEELSSILKLTWTNPSIKSVIILKYNIQYRTKDASTWSQIPPEDTAS 256
Query: 318 PGPP---TGPIDYT---------TVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDM 365
+T + W G P +
Sbjct: 257 TRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEAS--GITYEDRPSKAPSFWYKID 314
Query: 366 TVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSG 425
T+ + + P + EV+ + +
Sbjct: 315 PSHTQGYRTVQLVWKTLPPFEANGKILDYEVTLTRWKSHLQNYTVNATKLTVNLTND-RY 373
Query: 426 SYTIQLVNTVG-SDSASCKVYVVDKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITN 484
T+ + N VG SD+A + D + + + W P + I
Sbjct: 374 LATLTVRNLVGKSDAAVLTIPACDFQATHPVMDLKAFPKDNMLWVEWTTPRESVKKYILE 433
Query: 485 YVVEKYESATGVSDLFISKS 504
+ V ++ +
Sbjct: 434 WCVLSDKAPCITDWQQEDGT 453
|
| >3f7q_A Integrin beta-4, GP150; hemidesmosome, cell adhesion, carcinoma, epidermolysis bullosa, alternative splicing, disease mutation, glycoprotein; HET: 1PE PG4; 1.75A {Homo sapiens} PDB: 3f7r_A 3f7p_C 1qg3_A Length = 234 | Back alignment and structure |
|---|
Score = 83.7 bits (207), Expect = 2e-18
Identities = 26/112 (23%), Positives = 39/112 (34%), Gaps = 7/112 (6%)
Query: 5 VLIKNPFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMK------DKTGN 58
V + + P +P L L W P G IT Y V G
Sbjct: 90 VSCRTHQEVPSEPGRLAFNVVSSTVTQLSWAEPAETNG-EITAYEVCYGLVNDDNRPIGP 148
Query: 59 WEKAVVVPAGETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPK 110
+K +V + L E + Y++ V+A N AG G + + +PK
Sbjct: 149 MKKVLVDNPKNRMLLIENLRESQPYRYTVKARNGAGWGPEREAIINLATQPK 200
|
| >3f7q_A Integrin beta-4, GP150; hemidesmosome, cell adhesion, carcinoma, epidermolysis bullosa, alternative splicing, disease mutation, glycoprotein; HET: 1PE PG4; 1.75A {Homo sapiens} PDB: 3f7r_A 3f7p_C 1qg3_A Length = 234 | Back alignment and structure |
|---|
Score = 71.3 bits (175), Expect = 3e-14
Identities = 19/89 (21%), Positives = 31/89 (34%), Gaps = 4/89 (4%)
Query: 14 PGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVVVPAGETSCT 73
G P + A + W PP GY V+ + + +A ++ + S
Sbjct: 6 LGAPQNPNAKAAGSRKIHFNWLPP----SGKPMGYRVKYWIQGDSESEAHLLDSKVPSVE 61
Query: 74 VPGLIEGETYQFQVRAVNAAGPGEASKPT 102
+ L Y+ +V A A G G S
Sbjct: 62 LTNLYPYCDYEMKVCAYGAQGEGPYSSLV 90
|
| >3f7q_A Integrin beta-4, GP150; hemidesmosome, cell adhesion, carcinoma, epidermolysis bullosa, alternative splicing, disease mutation, glycoprotein; HET: 1PE PG4; 1.75A {Homo sapiens} PDB: 3f7r_A 3f7p_C 1qg3_A Length = 234 | Back alignment and structure |
|---|
Score = 43.2 bits (102), Expect = 8e-05
Identities = 17/94 (18%), Positives = 25/94 (26%), Gaps = 5/94 (5%)
Query: 426 SYTIQLVNTVGSDSASCKVYVV---DKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPI 482
+ G S V + PS P L + ++ LSW P + G I
Sbjct: 72 EMKVCAYGAQGEGPYSSLVSCRTHQEVPSEPGR-LAFNVVSSTVTQLSWAEPAETNG-EI 129
Query: 483 TNYVVEKYESATGVSDLFISKSEVKTGSLMTSKT 516
T Y V + K +
Sbjct: 130 TAYEVCYGLVNDDNRPIGPMKKVLVDNPKNRMLL 163
|
| >3b83_A Ten-D3; beta sheet, computational redesigned protein, alternative splicing, cell adhesion, coiled coil, EGF-like domain, extracellular matrix; 2.40A {Homo sapiens} Length = 100 | Back alignment and structure |
|---|
Score = 79.4 bits (196), Expect = 2e-18
Identities = 22/87 (25%), Positives = 34/87 (39%), Gaps = 5/87 (5%)
Query: 17 PTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGN-WEKAVVVPAGETSCTVP 75
P +++ T+ + W PPI PI G +V K E V + + TS T+
Sbjct: 5 PFNIKVTNITLTTAVVTWQPPIL----PIEGILVTFGRKNDPSDETTVDLTSSITSLTLT 60
Query: 76 GLIEGETYQFQVRAVNAAGPGEASKPT 102
L TY+ ++ A N T
Sbjct: 61 NLEPNTTYEIRIVARNGQQYSPPVSTT 87
|
| >3b83_A Ten-D3; beta sheet, computational redesigned protein, alternative splicing, cell adhesion, coiled coil, EGF-like domain, extracellular matrix; 2.40A {Homo sapiens} Length = 100 | Back alignment and structure |
|---|
Score = 40.4 bits (95), Expect = 1e-04
Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 6/48 (12%)
Query: 451 SPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATGVSD 498
PP + V++IT + ++W+PP+ PI +V + SD
Sbjct: 3 QPPFN-IKVTNITLTTAVVTWQPPI----LPIEGILVT-FGRKNDPSD 44
|
| >3teu_A Fibcon; FN3 domain, fibronectin TPYE III domain, consensus design, S de novo protein; HET: DIO; 1.00A {Synthetic} Length = 98 | Back alignment and structure |
|---|
Score = 78.6 bits (194), Expect = 4e-18
Identities = 27/88 (30%), Positives = 36/88 (40%), Gaps = 5/88 (5%)
Query: 17 PTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGN-WEKAVVVPAGETSCTVP 75
PTDL+ T+ + + WTPP + ITGY + G K + VP TS T+
Sbjct: 5 PTDLQVTNVTDTSITVSWTPP----SATITGYRITYTPSNGPGEPKELTVPPSSTSVTIT 60
Query: 76 GLIEGETYQFQVRAVNAAGPGEASKPTA 103
GL G Y V A+ T
Sbjct: 61 GLTPGVEYVVSVYALKDNQESPPLVGTQ 88
|
| >2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens} Length = 731 | Back alignment and structure |
|---|
Score = 86.4 bits (213), Expect = 5e-18
Identities = 58/484 (11%), Positives = 113/484 (23%), Gaps = 146/484 (30%)
Query: 12 DEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVVVPAGETS 71
+ P + ++ +Q +G PI VE +G+W V TS
Sbjct: 260 EPPVPIAPPQLASVGATYLWIQLNANSINGDGPIVAREVEYCTASGSWNDRQPVD--STS 317
Query: 72 CTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAPRIDRSTLNDVKIKAGQS 131
+ L Y+ V G P + + K P +++ +S
Sbjct: 318 YKIGHLDPDTEYEISVLLTRPGEGGT-GSPGPALRTRTKCADPM---RGPRKLEVVEVKS 373
Query: 132 FSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQT 191
++ W EPF + + + V
Sbjct: 374 RQITIR------------------------W----EPFGYNVTRCHSYNLTVHYCYQVGG 405
Query: 192 TKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVTGTEFTDNNVHEGKAYEYRVSAV 251
+ + + + T N+ ++ +
Sbjct: 406 QEQVRE-----------------------EVSWDTENSHPQHTITNLSPYTNVSVKLILM 442
Query: 252 NAAGTEKPKISLDALIGKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIE 311
N G ++ + + T
Sbjct: 443 NPEGRKESQE-------------LIVQTDE------------------------------ 459
Query: 312 VVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGE 371
PG + E + + W+ P G IT
Sbjct: 460 ----DLPGAVPTESIQGSTFEEKIFLQWREPTQTYG-VITL------------------- 495
Query: 372 EFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGS-YTIQ 430
+ IT K + D + GR+ +E ++ G+ Y+
Sbjct: 496 -YEITY------KAVSSFDPEIDLSNQSGRVSKLGNETHFLFFG------LYPGTTYSFT 542
Query: 431 L--VNTVGSDSASCKVYVV---DKPSPPQGPLDVS-DITPESCSLSWKPPLDDGGSPITN 484
+ G PS P L+ + T + ++ KP G P++
Sbjct: 543 IRASTAKG-FGPPATNQFTTKISAPSMPAYELETPLNQTDNTVTVMLKPAHSRGA-PVSV 600
Query: 485 YVVE 488
Y +
Sbjct: 601 YQIV 604
|
| >2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens} Length = 731 | Back alignment and structure |
|---|
Score = 81.7 bits (201), Expect = 1e-16
Identities = 38/215 (17%), Positives = 61/215 (28%), Gaps = 36/215 (16%)
Query: 280 ASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSW 339
A L I + + + +A EV V+ P T
Sbjct: 123 AELAISTFWPNFYQVIFEVITSGHQGYLAIDEVKVLGHPCTRTPHF-------------- 168
Query: 340 KPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVS-- 397
L I+++ V AG+ T GR + G +V
Sbjct: 169 --------------------LRIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDA 208
Query: 398 PDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQGPL 457
P IK +S N D+G Y + G ++ VV +P P P
Sbjct: 209 PLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVVKEPPVPIAPP 268
Query: 458 DVSDITPESCSLSWKPPLDDGGSPITNYVVEKYES 492
++ + + +G PI VE +
Sbjct: 269 QLASVGATYLWIQLNANSINGDGPIVAREVEYCTA 303
|
| >2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens} Length = 731 | Back alignment and structure |
|---|
Score = 73.3 bits (179), Expect = 7e-14
Identities = 37/241 (15%), Positives = 71/241 (29%), Gaps = 49/241 (20%)
Query: 278 TTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSM 337
AS N+ N+ ++D+G Y+ + + G+ +++ +VV +P P P +V + +
Sbjct: 221 FIASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVVKEPPVPIAPPQLASVGATYLWI 280
Query: 338 SWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVS 397
+G PI V
Sbjct: 281 QLNANSINGDGPIVA------------------------------------REVEYCT-- 302
Query: 398 PDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLV----NTVGSDSASCKVYVVDKPSPP 453
G + T Y+ T+ Y I ++ G+ S + K + P
Sbjct: 303 ASGSWNDRQPVDSTSYKIGHLDPDTE---YEISVLLTRPGEGGTGSPGPALRTRTKCADP 359
Query: 454 QGP---LDVSDITPESCSLSWKPPLDDGGS-PITNYVVEKYESATGVSDLFISKSEVKTG 509
L+V ++ ++ W+P + N V G + S
Sbjct: 360 MRGPRKLEVVEVKSRQITIRWEPFGYNVTRCHSYNLTVHYCYQVGGQEQVREEVSWDTEN 419
Query: 510 S 510
S
Sbjct: 420 S 420
|
| >2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens} Length = 731 | Back alignment and structure |
|---|
Score = 70.2 bits (171), Expect = 8e-13
Identities = 51/276 (18%), Positives = 82/276 (29%), Gaps = 58/276 (21%)
Query: 4 SVLIKNPFDEPGK-PTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMK--------D 54
++++ D PG PT+ ++ + LQW P G IT Y + K
Sbjct: 452 ELIVQTDEDLPGAVPTESIQGSTFEEKIFLQWREPTQTYGV-ITLYEITYKAVSSFDPEI 510
Query: 55 KTGNWEKAVVVPAGETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAP 114
N V ET GL G TY F +RA A G G +
Sbjct: 511 DLSNQSGRVSKLGNETHFLFFGLYPGTTYSFTIRASTAKGFGPPATNQF----------- 559
Query: 115 RIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLS-EPFLNHG 173
+T P L N T V + +P + G
Sbjct: 560 ----TTKISA--------------------PSMPAYELETPLNQTDNTVTVMLKPAHSRG 595
Query: 174 WSING---QVCQIGGRADVQTTKSETVLDIPFCSRSDTG---HYSLTLENNLGTATASAH 227
++ V + R +TT+ +P ++ + Y E + A+
Sbjct: 596 APVSVYQIVVEEERPRRTKKTTEILKCYPVPIHFQNASLLNSQYYFAAEFPADSLQAAQP 655
Query: 228 VT------GTEFTDNNVHEGKAYEYRVSAVNAAGTE 257
T + + + K+Y A + A E
Sbjct: 656 FTIGDNKTYNGYWNTPLLPYKSYRIYFQAASRANGE 691
|
| >2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens} Length = 731 | Back alignment and structure |
|---|
Score = 63.3 bits (153), Expect = 1e-10
Identities = 13/112 (11%), Positives = 33/112 (29%), Gaps = 11/112 (9%)
Query: 4 SVLIKNPFDEPGK-PTDLEATDWDKDHVDLQWTPPISDGGS-PITGYVVEMKDKTG---- 57
++ + +P + P LE + + ++W P + V + G
Sbjct: 349 ALRTRTKCADPMRGPRKLEVVEVKSRQITIRWEPFGYNVTRCHSYNLTVHYCYQVGGQEQ 408
Query: 58 -NWEKAVVVPAGETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAK 108
E + T+ L ++ +N G + ++ +
Sbjct: 409 VREEVSWDTENSHPQHTITNLSPYTNVSVKLILMNPEGRK----ESQELIVQ 456
|
| >2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens} Length = 731 | Back alignment and structure |
|---|
Score = 58.3 bits (140), Expect = 4e-09
Identities = 36/371 (9%), Positives = 96/371 (25%), Gaps = 56/371 (15%)
Query: 167 EPFLNHGWSINGQVCQIGGRADVQTTKSETV---LDIPFCSRSDTGHYSLTLENNLGTAT 223
+ G + +++ T S ++ ++ D G Y + G
Sbjct: 191 RTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGI 250
Query: 224 ASAHVTGTEFTDNNVHEGKAYEYRVSAVNAAGTEKPKISLDALIGKRI---------KEF 274
++ + + + + + ++ + + +
Sbjct: 251 SNYAELVVKEPPVPIAPPQLASVGATYLWIQLNANSINGDGPIVAREVEYCTASGSWNDR 310
Query: 275 VTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMAD--IEVVVVSKPGPPTGP---IDYTT 329
+ S I + + + +K P ++
Sbjct: 311 QPVDSTSYKIGHLDPDTEYEISVLLTRPGEGGTGSPGPALRTRTKCADPMRGPRKLEVVE 370
Query: 330 VTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIW 389
V +++ W+P + + +TV + +
Sbjct: 371 VKSRQITIRWEPFGYNVT---------------------RCHSYNLTVHYCYQVGGQEQV 409
Query: 390 TVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQL--VNTVG-SDSASCKVYV 446
+ ++T + + + T+ +++L +N G +S V
Sbjct: 410 RE---------EVSWDTENSHPQHTITNLSPYTN---VSVKLILMNPEGRKESQELIVQT 457
Query: 447 V-DKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATGVSDLFISKSE 505
D P E L W+ P G IT Y + Y++ + ++
Sbjct: 458 DEDLPGAVPTESIQGSTFEEKIFLQWREPTQTYGV-ITLYEIT-YKAVSSFDPEIDLSNQ 515
Query: 506 VKTGSLMTSKT 516
S + ++T
Sbjct: 516 SGRVSKLGNET 526
|
| >2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens} Length = 731 | Back alignment and structure |
|---|
Score = 41.7 bits (97), Expect = 6e-04
Identities = 19/171 (11%), Positives = 41/171 (23%), Gaps = 45/171 (26%)
Query: 4 SVLIKNPFDEPGKPTDLEATDWDK--DHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEK 61
+ P P T ++ + V + P G+P++ Y + ++++ K
Sbjct: 556 TNQFTTKISAPSMPAYELETPLNQTDNTVTVMLKPA-HSRGAPVSVYQIVVEEERPRRTK 614
Query: 62 ---------------------------AVVVPAGE---------------TSCTVPGLIE 79
A PA L+
Sbjct: 615 KTTEILKCYPVPIHFQNASLLNSQYYFAAEFPADSLQAAQPFTIGDNKTYNGYWNTPLLP 674
Query: 80 GETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAPRIDRSTLNDVKIKAGQ 130
++Y+ +A + A P + D +K +
Sbjct: 675 YKSYRIYFQAASRANGETKIDCVQVATKGAATPKPVPEPEKQTDHTVKGTK 725
|
| >2e7h_A Ephrin type-B receptor 4; FN3 domain, tyrosine- protein kinase receptor HTK, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 109 | Back alignment and structure |
|---|
Score = 78.3 bits (193), Expect = 8e-18
Identities = 23/91 (25%), Positives = 36/91 (39%), Gaps = 2/91 (2%)
Query: 12 DEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAV-VVPAGET 70
P +D+ T + L W P + G + Y V+ +K +V + E
Sbjct: 6 SGPPAVSDIRVTRSSPSSLSLAWAVPRAPSG-AVLDYEVKYHEKGAEGPSSVRFLKTSEN 64
Query: 71 SCTVPGLIEGETYQFQVRAVNAAGPGEASKP 101
+ GL G +Y QVRA + AG G +
Sbjct: 65 RAELRGLKRGASYLVQVRARSEAGYGPFGQE 95
|
| >1wfn_A Sidekick 2; FN3, cell adhesion, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 119 | Back alignment and structure |
|---|
Score = 78.2 bits (193), Expect = 8e-18
Identities = 24/100 (24%), Positives = 38/100 (38%), Gaps = 2/100 (2%)
Query: 4 SVLIKNPFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVE-MKDKTGNWEKA 62
L++ D PG L ++ + + W P G +TGY + + N
Sbjct: 8 PQLVRTHEDVPGPVGHLSFSEILDTSLKVSWQEPGEKNG-ILTGYRISWEEYNRTNTRVT 66
Query: 63 VVVPAGETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPT 102
+P V GL TY +V A+ + G G+ S T
Sbjct: 67 HYLPNVTLEYRVTGLTALTTYTIEVAAMTSKGQGQVSAST 106
|
| >3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403 | Back alignment and structure |
|---|
Score = 84.1 bits (208), Expect = 1e-17
Identities = 54/295 (18%), Positives = 79/295 (26%), Gaps = 68/295 (23%)
Query: 174 WSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATA-SAHVT--- 229
W N Q L I D+G Y + N T T A V
Sbjct: 155 WQKNQQDLNPIPGDSRVVVLPSGALQISRLQPGDSGVYRCSARNPASTRTGNEAEVRILS 214
Query: 230 ----------GTEFTDNNVHEGKAYEYRVSAV---NAAGTEKPKIS---LDALIGKRIKE 273
++ EGK AV +G P + + +I R K+
Sbjct: 215 DPGLHRQLYFLQRPSNVIAIEGK------DAVLECCVSGYPPPSFTWLRGEEVIQLRSKK 268
Query: 274 FVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPE 333
+ ++L I N DSG Y A E+ V+
Sbjct: 269 YSLLGGSNLLISNVTDDDSGTYTCVVTYKNENISASAELTVLV----------------- 311
Query: 334 SVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNG 393
P + ++ + SG+P PT W NG
Sbjct: 312 -------------------PPWFLN--HPSNLYAYESMDIEFECAVSGKPVPTVNWMKNG 350
Query: 394 DEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVD 448
D V P + N I +D G Y N G+ +S ++ V
Sbjct: 351 DVVIPSDYFQIVGGSNLRI----LGVVKSDEGFYQCVAENEAGNAQSSAQLIVPK 401
|
| >3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403 | Back alignment and structure |
|---|
Score = 75.6 bits (186), Expect = 6e-15
Identities = 49/311 (15%), Positives = 93/311 (29%), Gaps = 67/311 (21%)
Query: 174 WSINGQVCQIGGRADVQTTKSETV----LDIPFCSRSDTGHYSLTLENNLGTATAS--AH 227
W +G + +G Q + ++ + + D G Y + S A
Sbjct: 56 WKKDGLILALGMDDRKQQLPNGSLLIQNILHSRHHKPDEGLYQCEASLGDSGSIISRTAK 115
Query: 228 VT-------GTEFTDNNVHEGKAYEYRVSAV---NAAGTEKPKIS-------LDALIGKR 270
V ++ G + + G P I L+ + G
Sbjct: 116 VMVAGPLRFLSQTESITAFMGD------TVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDS 169
Query: 271 IKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMA-DIEVVVVSKPGPPTGPIDYTT 329
V + +L I DSG+Y+ A+N + EV ++S PG
Sbjct: 170 R--VVVLPSGALQISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLY---- 223
Query: 330 VTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIW 389
P ++ + G++ + SG P P+ W
Sbjct: 224 --------------------FLQRPS--------NVIAIEGKDAVLECCVSGYPPPSFTW 255
Query: 390 TVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDK 449
+ + + K+ + + DSG+YT + + SAS ++ V+
Sbjct: 256 LRGEEVIQLRSK-KYSLLGGSNLLISNV--TDDDSGTYTCVVTYKNENISASAELTVLVP 312
Query: 450 PSPPQGPLDVS 460
P P ++
Sbjct: 313 PWFLNHPSNLY 323
|
| >3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403 | Back alignment and structure |
|---|
Score = 55.2 bits (133), Expect = 2e-08
Identities = 38/259 (14%), Positives = 75/259 (28%), Gaps = 58/259 (22%)
Query: 216 ENNLGTATASAHVTG-------TEFTDNNVHEGKAYEYRVSAVNAAGTEKPKIS------ 262
+ L ++ H G +E +D G SA + P I
Sbjct: 4 GSELESSHHHHHHGGRRSLHFVSEPSDAVTMRGGNVLLNCSA--ESDRGVPVIKWKKDGL 61
Query: 263 -LDALIGKRIKEFVTSTT--ASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPG 319
L + R ++ + ++ + D G+Y+ EA ++S+
Sbjct: 62 ILALGMDDRKQQLPNGSLLIQNILHSRHHKPDEGLYQCEASLGDS-------GSIISRT- 113
Query: 320 PPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPF 379
V + G + S +T G+ +
Sbjct: 114 --------AKVM------------------VAGPLRFLSQT--ESITAFMGDTVLLKCEV 145
Query: 380 SGRPKPTPIWTVNGDEVSP-DGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSD 438
G P PT W N +++P G + + + ++ + DSG Y N +
Sbjct: 146 IGDPMPTIHWQKNQQDLNPIPGDSRVVVLPSGALQISRL--QPGDSGVYRCSARNPASTR 203
Query: 439 -SASCKVYVVDKPSPPQGP 456
+V ++ P +
Sbjct: 204 TGNEAEVRILSDPGLHRQL 222
|
| >1x5z_A Receptor-type tyrosine-protein phosphatase delta; fibronectin type III domain containing protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 115 | Back alignment and structure |
|---|
Score = 77.0 bits (190), Expect = 2e-17
Identities = 26/99 (26%), Positives = 43/99 (43%), Gaps = 4/99 (4%)
Query: 4 SVLIKNPFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAV 63
+ + PG+P + +A + + L WTPP SD I Y + KD E+ +
Sbjct: 8 DIQVITQTGVPGQPLNFKAEPESETSILLSWTPPRSD---TIANYELVYKDGEHGEEQRI 64
Query: 64 VVPAGETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPT 102
+ G TS + GL Y F++ A + G G ++
Sbjct: 65 TIEPG-TSYRLQGLKPNSLYYFRLAARSPQGLGASTAEI 102
|
| >1x5z_A Receptor-type tyrosine-protein phosphatase delta; fibronectin type III domain containing protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 115 | Back alignment and structure |
|---|
Score = 41.6 bits (98), Expect = 6e-05
Identities = 17/63 (26%), Positives = 23/63 (36%), Gaps = 7/63 (11%)
Query: 436 GSDSASCKVYVV---DKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYES 492
GS +S + V+ P P + S LSW PP D I NY + +
Sbjct: 1 GSSGSSGDIQVITQTGVPGQPLN-FKAEPESETSILLSWTPPRSD---TIANYELVYKDG 56
Query: 493 ATG 495
G
Sbjct: 57 EHG 59
|
| >3r8q_A Fibronectin; heparin, FNIII, heparin binding, cell adhesion; 2.40A {Homo sapiens} PDB: 1fnh_A Length = 290 | Back alignment and structure |
|---|
Score = 81.0 bits (200), Expect = 3e-17
Identities = 23/99 (23%), Positives = 36/99 (36%), Gaps = 5/99 (5%)
Query: 12 DEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGN-WEKAVVVPAGET 70
PTDL+ T + QWTPP +TGY V + K K + + +
Sbjct: 19 PAIPAPTDLKFTQVTPTSLSAQWTPP----NVQLTGYRVRVTPKEKTGPMKEINLAPDSS 74
Query: 71 SCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKP 109
S V GL+ Y+ V A+ ++ +
Sbjct: 75 SVVVSGLMVATKYEVSVYALKDTLTSRPAQGVVTTLENV 113
|
| >3r8q_A Fibronectin; heparin, FNIII, heparin binding, cell adhesion; 2.40A {Homo sapiens} PDB: 1fnh_A Length = 290 | Back alignment and structure |
|---|
Score = 79.8 bits (197), Expect = 8e-17
Identities = 19/110 (17%), Positives = 34/110 (30%), Gaps = 5/110 (4%)
Query: 4 SVLIKNPFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAV 63
+ + + P TD + + + W ITG+ V+ G
Sbjct: 103 AQGVVTTLENVSPPRRARVTDATETTITISWRTK----TETITGFQVDAVPANGQTPIQR 158
Query: 64 VVPAGETSCTVPGLIEGETYQFQVRAVNAAGPGEAS-KPTAPIVAKPKNL 112
+ S T+ GL G Y+ + +N + + P NL
Sbjct: 159 TIKPDVRSYTITGLQPGTDYKIYLYTLNDNARSSPVVIDASTAIDAPSNL 208
|
| >3r8q_A Fibronectin; heparin, FNIII, heparin binding, cell adhesion; 2.40A {Homo sapiens} PDB: 1fnh_A Length = 290 | Back alignment and structure |
|---|
Score = 77.9 bits (192), Expect = 3e-16
Identities = 20/92 (21%), Positives = 33/92 (35%), Gaps = 5/92 (5%)
Query: 9 NPFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGN-WEKAVVVPA 67
+ P++L + + + W PP + ITGY+++ + E
Sbjct: 197 DASTAIDAPSNLRFLATTPNSLLVSWQPP----RARITGYIIKYEKPGSPPREVVPRPRP 252
Query: 68 GETSCTVPGLIEGETYQFQVRAVNAAGPGEAS 99
G T T+ GL G Y V A+ E
Sbjct: 253 GVTEATITGLEPGTEYTIYVIALKNNQKSEPL 284
|
| >3r8q_A Fibronectin; heparin, FNIII, heparin binding, cell adhesion; 2.40A {Homo sapiens} PDB: 1fnh_A Length = 290 | Back alignment and structure |
|---|
Score = 54.4 bits (131), Expect = 2e-08
Identities = 15/76 (19%), Positives = 24/76 (31%), Gaps = 4/76 (5%)
Query: 433 NTVGSDSASCKVYVVDKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYES 492
+ S+ +V P L + +TP S S W PP +T Y V
Sbjct: 3 HHHHHHSSGLEVLFQGPAIPAPTDLKFTQVTPTSLSAQWTPP----NVQLTGYRVRVTPK 58
Query: 493 ATGVSDLFISKSEVKT 508
I+ + +
Sbjct: 59 EKTGPMKEINLAPDSS 74
|
| >3r8q_A Fibronectin; heparin, FNIII, heparin binding, cell adhesion; 2.40A {Homo sapiens} PDB: 1fnh_A Length = 290 | Back alignment and structure |
|---|
Score = 52.9 bits (127), Expect = 7e-08
Identities = 34/189 (17%), Positives = 60/189 (31%), Gaps = 46/189 (24%)
Query: 308 ADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTV 367
+ +EV+ P + +T VTP S+S W PP +TG
Sbjct: 10 SGLEVLFQGPAIPAPTDLKFTQVTPTSLSAQWTPP----NVQLTG--------------- 50
Query: 368 LAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSY 427
+ + V + P + D S + T Y
Sbjct: 51 -----YRVRVTPKEKTGPMKEINLAPDSSS----VVVSGLMVATKY------------EV 89
Query: 428 TIQLVNTVG-SDSASCKVYVVDKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYV 486
++ + S A V ++ SPP+ V+D T + ++SW+ IT +
Sbjct: 90 SVYALKDTLTSRPAQGVVTTLENVSPPRR-ARVTDATETTITISWRTK----TETITGFQ 144
Query: 487 VEKYESATG 495
V+ +
Sbjct: 145 VDAVPANGQ 153
|
| >3r8q_A Fibronectin; heparin, FNIII, heparin binding, cell adhesion; 2.40A {Homo sapiens} PDB: 1fnh_A Length = 290 | Back alignment and structure |
|---|
Score = 46.3 bits (110), Expect = 9e-06
Identities = 38/275 (13%), Positives = 69/275 (25%), Gaps = 100/275 (36%)
Query: 223 TASAHVTGTEFTDNNVHEGKAYEYRVSAVNAAGTEKPKISLDALIGKRIKEFVTSTTASL 282
+ + + + YE V A+ T + + VT+
Sbjct: 66 EINLAPDSSSVVVSGLMVATKYEVSVYALKDTLT-----------SRPAQGVVTTLE--- 111
Query: 283 NIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPP 342
PP T T ++++SW+
Sbjct: 112 ----------------------------------NVSPPRRAR-VTDATETTITISWRTK 136
Query: 343 VDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRI 402
+ ITG + V+ + I
Sbjct: 137 TE----TITG------------------------------------FQVDAVPANGQTPI 156
Query: 403 KFETSENQTIYRNKSAKRATDSGSYTIQL--VNTVGSDSASCKVYVVDKPSPPQGPLDVS 460
+ + Y + TD Y I L +N S+ + P L
Sbjct: 157 QRTIKPDVRSYTITGLQPGTD---YKIYLYTLNDNAR-SSPVVIDASTAIDAPSN-LRFL 211
Query: 461 DITPESCSLSWKPPLDDGGSPITNYVVEKYESATG 495
TP S +SW+PP + IT Y+++ + +
Sbjct: 212 ATTPNSLLVSWQPP----RARITGYIIKYEKPGSP 242
|
| >1wfu_A Unnamed protein product; FN3 domain, similar to 1700007B22RIK protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.1.2.1 Length = 120 | Back alignment and structure |
|---|
Score = 76.9 bits (189), Expect = 3e-17
Identities = 17/111 (15%), Positives = 35/111 (31%), Gaps = 5/111 (4%)
Query: 4 SVLIKNPFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITG----YVVEMKDKTGNW 59
S + + KP ++L W + + +E +D +
Sbjct: 6 SGMEPHKVVPLSKPHPPVVGKVTHHSIELYWDLEQKEKRQGPQEQWLRFSIEEEDPKMH- 64
Query: 60 EKAVVVPAGETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPK 110
V+ T V GL Y+F+++ + +G E S + +
Sbjct: 65 SYGVIYTGYATRHVVEGLEPRTLYKFRLKVTSPSGEYEYSPVVSVATTRES 115
|
| >1wfu_A Unnamed protein product; FN3 domain, similar to 1700007B22RIK protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.1.2.1 Length = 120 | Back alignment and structure |
|---|
Score = 47.3 bits (112), Expect = 7e-07
Identities = 12/56 (21%), Positives = 18/56 (32%), Gaps = 4/56 (7%)
Query: 433 NTVGSDSASCKVYVVDKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVE 488
++ S KV + KP PP V +T S L W + +
Sbjct: 2 SSGSSGMEPHKVVPLSKPHPPV----VGKVTHHSIELYWDLEQKEKRQGPQEQWLR 53
|
| >1wfu_A Unnamed protein product; FN3 domain, similar to 1700007B22RIK protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.1.2.1 Length = 120 | Back alignment and structure |
|---|
Score = 38.8 bits (90), Expect = 7e-04
Identities = 12/47 (25%), Positives = 17/47 (36%), Gaps = 4/47 (8%)
Query: 306 DMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITG 352
M +VV +SKP PP VT S+ + W +
Sbjct: 7 GMEPHKVVPLSKPHPPVV----GKVTHHSIELYWDLEQKEKRQGPQE 49
|
| >2edb_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 116 | Back alignment and structure |
|---|
Score = 76.3 bits (188), Expect = 4e-17
Identities = 20/105 (19%), Positives = 37/105 (35%), Gaps = 5/105 (4%)
Query: 10 PFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVVVPAGE 69
P +P+ L + + + WTPP + + GY++ + E V V + +
Sbjct: 14 ESQVPDQPSSLHVRP-QTNCIIMSWTPP-LNPNIVVRGYIIGYGVGSPYAET-VRVDSKQ 70
Query: 70 TSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAP 114
++ L Y ++A N AG G + P
Sbjct: 71 RYYSIERLESSSHYVISLKAFNNAGEGVPL--YESATTRSITSGP 113
|
| >1qr4_A Protein (tenascin); fibronectin type-III, heparin, extracellular matrix, adhesion, fusion protein, structural protein; 2.55A {Gallus gallus} SCOP: b.1.2.1 b.1.2.1 Length = 186 | Back alignment and structure |
|---|
Score = 77.5 bits (191), Expect = 9e-17
Identities = 20/90 (22%), Positives = 31/90 (34%), Gaps = 4/90 (4%)
Query: 14 PGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVVVPAGETSCT 73
G P + +D ++ + WTPP S + Y V TG V V +T
Sbjct: 95 VGSPKGISFSDITENSATVSWTPPRS----RVDSYRVSYVPITGGTPNVVTVDGSKTRTK 150
Query: 74 VPGLIEGETYQFQVRAVNAAGPGEASKPTA 103
+ L+ G Y + +V E
Sbjct: 151 LVKLVPGVDYNVNIISVKGFEESEPISGIL 180
|
| >1qr4_A Protein (tenascin); fibronectin type-III, heparin, extracellular matrix, adhesion, fusion protein, structural protein; 2.55A {Gallus gallus} SCOP: b.1.2.1 b.1.2.1 Length = 186 | Back alignment and structure |
|---|
Score = 71.7 bits (176), Expect = 1e-14
Identities = 23/115 (20%), Positives = 40/115 (34%), Gaps = 8/115 (6%)
Query: 13 EPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVVVPAGETSC 72
+ P DLE +D + + L+W P++ Y + +G + +P TS
Sbjct: 6 DLDNPKDLEVSDPTETTLSLRWRRPVA----KFDRYRLTYVSPSGKK-NEMEIPVDSTSF 60
Query: 73 TVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIV-AKPKNLAPRIDRSTLNDVKI 126
+ GL G Y + A + + V PK + T N +
Sbjct: 61 ILRGLDAGTEYTISLVAEKGRHKSKPTTIKGSTVVGSPKGI--SFSDITENSATV 113
|
| >1qr4_A Protein (tenascin); fibronectin type-III, heparin, extracellular matrix, adhesion, fusion protein, structural protein; 2.55A {Gallus gallus} SCOP: b.1.2.1 b.1.2.1 Length = 186 | Back alignment and structure |
|---|
Score = 40.1 bits (94), Expect = 5e-04
Identities = 11/44 (25%), Positives = 18/44 (40%), Gaps = 5/44 (11%)
Query: 449 KPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYES 492
P+ L+VSD T + SL W+ P+ + Y +
Sbjct: 6 DLDNPKD-LEVSDPTETTLSLRWRRPV----AKFDRYRLTYVSP 44
|
| >1fnf_A Fibronectin; RGD, extracellular matrix, cell adhesion protein; 2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1mfn_A 2mfn_A 2ck2_A Length = 368 | Back alignment and structure |
|---|
Score = 80.3 bits (198), Expect = 1e-16
Identities = 24/106 (22%), Positives = 37/106 (34%), Gaps = 5/106 (4%)
Query: 4 SVLIKNPFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTG-NWEKA 62
+LI P DLE + + W P + Y + + G + +
Sbjct: 266 PLLIGQQSTVSDVPRDLEVVAATPTSLLISWDAP----AVTVRYYRITYGETGGNSPVQE 321
Query: 63 VVVPAGETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAK 108
VP +++ T+ GL G Y V AV G AS I +
Sbjct: 322 FTVPGSKSTATISGLKPGVDYTITVYAVTGRGDSPASSKPISINYR 367
|
| >1fnf_A Fibronectin; RGD, extracellular matrix, cell adhesion protein; 2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1mfn_A 2mfn_A 2ck2_A Length = 368 | Back alignment and structure |
|---|
Score = 71.4 bits (175), Expect = 1e-13
Identities = 18/103 (17%), Positives = 34/103 (33%), Gaps = 5/103 (4%)
Query: 12 DEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMK-DKTGNWEKAVVVPAGET 70
PTDL T+ D + + W PP +T ++V K + + +
Sbjct: 93 PAVPPPTDLRFTNIGPDTMRVTWAPP---PSIDLTNFLVRYSPVKNEEDVAELSISPSDN 149
Query: 71 SCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPI-VAKPKNL 112
+ + L+ G Y V +V + + P +
Sbjct: 150 AVVLTNLLPGTEYVVSVSSVYEQHESTPLRGRQKTGLDSPTGI 192
|
| >1fnf_A Fibronectin; RGD, extracellular matrix, cell adhesion protein; 2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1mfn_A 2mfn_A 2ck2_A Length = 368 | Back alignment and structure |
|---|
Score = 69.1 bits (169), Expect = 7e-13
Identities = 22/114 (19%), Positives = 36/114 (31%), Gaps = 6/114 (5%)
Query: 9 NPFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDK-TGNWEKAVVVPA 67
PT ++ +D + + W P + ITGY + + + VP
Sbjct: 181 RQKTGLDSPTGIDFSDITANSFTVHWIAP----RATITGYRIRHHPEHFSGRPREDRVPH 236
Query: 68 GETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIV-AKPKNLAPRIDRST 120
S T+ L G Y + A+N V P++L T
Sbjct: 237 SRNSITLTNLTPGTEYVVSIVALNGREESPLLIGQQSTVSDVPRDLEVVAATPT 290
|
| >1fnf_A Fibronectin; RGD, extracellular matrix, cell adhesion protein; 2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1mfn_A 2mfn_A 2ck2_A Length = 368 | Back alignment and structure |
|---|
Score = 65.6 bits (160), Expect = 8e-12
Identities = 25/103 (24%), Positives = 32/103 (31%), Gaps = 7/103 (6%)
Query: 14 PGKPTDLEATDW-DKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNW--EKAVVVPAGET 70
PT+L D + + W ITGY + G VV A ++
Sbjct: 2 LSPPTNLHLEANPDTGVLTVSWERS---TTPDITGYRITTTPTNGQQGNSLEEVVHADQS 58
Query: 71 SCTVPGLIEGETYQFQVRAVNAAGPGEASKP-TAPIVAKPKNL 112
SCT L G Y V V P V P +L
Sbjct: 59 SCTFDNLSPGLEYNVSVYTVKDDKESVPISDTIIPAVPPPTDL 101
|
| >1fnf_A Fibronectin; RGD, extracellular matrix, cell adhesion protein; 2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1mfn_A 2mfn_A 2ck2_A Length = 368 | Back alignment and structure |
|---|
Score = 46.7 bits (111), Expect = 9e-06
Identities = 27/201 (13%), Positives = 56/201 (27%), Gaps = 45/201 (22%)
Query: 295 YKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAP 354
Y + + + PP + +T + P+++ ++W PP +T
Sbjct: 71 YNVSVYTVKDDKESVPISDTIIPAVPPPTDLRFTNIGPDTMRVTWAPP---PSIDLTN-- 125
Query: 355 KITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYR 414
F + + +++ + + + T Y
Sbjct: 126 ------------------FLVRYSPVKNEEDVAELSISPSDNA----VVLTNLLPGTEY- 162
Query: 415 NKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQGPLDVSDITPESCSLSWKPP 474
++ V S + P G +D SDIT S ++ W P
Sbjct: 163 -----------VVSVSSVYEQHE-STPLRGRQKTGLDSPTG-IDFSDITANSFTVHWIAP 209
Query: 475 LDDGGSPITNYVVEKYESATG 495
+ IT Y + +
Sbjct: 210 ----RATITGYRIRHHPEHFS 226
|
| >1fnf_A Fibronectin; RGD, extracellular matrix, cell adhesion protein; 2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1mfn_A 2mfn_A 2ck2_A Length = 368 | Back alignment and structure |
|---|
Score = 46.7 bits (111), Expect = 9e-06
Identities = 30/189 (15%), Positives = 56/189 (29%), Gaps = 47/189 (24%)
Query: 318 PGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITV 377
PPT +++SW+ ITG + IT
Sbjct: 2 LSPPTNLHLEANPDTGVLTVSWERSTTP---DITG--------------------YRITT 38
Query: 378 -PFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVG 436
P +G+ + V+ D Q+ + Y + +
Sbjct: 39 TPTNGQQGNSLEEVVHAD---------------QSSCTFDNLSPGL---EYNVSVYTVKD 80
Query: 437 S-DSASCKVYVVDKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATG 495
+S ++ PP L ++I P++ ++W PP +TN++V
Sbjct: 81 DKESVPISDTIIPAVPPPT-DLRFTNIGPDTMRVTWAPP---PSIDLTNFLVRYSPVKNE 136
Query: 496 VSDLFISKS 504
+S S
Sbjct: 137 EDVAELSIS 145
|
| >3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231 | Back alignment and structure |
|---|
Score = 77.6 bits (191), Expect = 2e-16
Identities = 33/192 (17%), Positives = 61/192 (31%), Gaps = 43/192 (22%)
Query: 275 VTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPES 334
V + SL +++ V D G Y +N+YG + VV +
Sbjct: 71 VRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERS---------------- 114
Query: 335 VSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWT---- 390
+P + G P + + + G + +P W
Sbjct: 115 ---RHRPIL------QAGLPA--------NASTVVGGDVEFVCKVYSDAQPHIQWIKHVE 157
Query: 391 VNGDEVSPDGRIKFETSENQTIYRNKSAK------RATDSGSYTIQLVNTVGSDSASCKV 444
NG + PDG + ++ I + + D+G Y ++ N +G + S +
Sbjct: 158 KNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQANQSAWL 217
Query: 445 YVVDKPSPPQGP 456
V+ K P
Sbjct: 218 TVLPKQQAPGRE 229
|
| >3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231 | Back alignment and structure |
|---|
Score = 62.6 bits (152), Expect = 2e-11
Identities = 29/107 (27%), Positives = 42/107 (39%), Gaps = 10/107 (9%)
Query: 353 APKITSDLSI--RDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQ 410
AP T+ + R V A P G P PT W NG E + RI NQ
Sbjct: 15 APYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQ 74
Query: 411 ----TIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPP 453
+ +S +D G+YT + N GS + + + VV++
Sbjct: 75 HWSLIM---ESVVP-SDKGNYTCVVENEYGSINHTYHLDVVERSRHR 117
|
| >3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231 | Back alignment and structure |
|---|
Score = 52.6 bits (126), Expect = 7e-08
Identities = 29/183 (15%), Positives = 51/183 (27%), Gaps = 38/183 (20%)
Query: 174 WSINGQVCQIGGRADVQTTKSET-VLDIPFCSRSDTGHYSLTLENNLGTATASAHVT--- 229
W NG+ + R +++ L + SD G+Y+ +EN G+ + H+
Sbjct: 53 WLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVE 112
Query: 230 ---------GTEFTDNNVHEGKAYEYRVSAV---NAAGTEKPKIS--------------- 262
+ + G +P I
Sbjct: 113 RSRHRPILQAGLPANASTVVGG------DVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPD 166
Query: 263 -LDALIGKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPP 321
L L + +S L + N D+G Y + N G + V+ K P
Sbjct: 167 GLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQANQSAWLTVLPKQQAP 226
Query: 322 TGP 324
Sbjct: 227 GRE 229
|
| >3t04_D Monobody 7C12; engineered binding protein, antibody mimic, protein-protein SH2 domain, ATP-binding, phosphoprotein; 2.10A {Homo sapiens} Length = 103 | Back alignment and structure |
|---|
Score = 73.6 bits (181), Expect = 3e-16
Identities = 21/96 (21%), Positives = 33/96 (34%), Gaps = 2/96 (2%)
Query: 14 PGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGN-WEKAVVVPAGETSC 72
PT LE D + + W S + Y + + G+ + VP ++
Sbjct: 8 SSVPTKLEVVDATPTSLKISWDAYYSSWQ-NVKYYRITYGETGGDSPVQEFTVPGYYSTA 66
Query: 73 TVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAK 108
T+ GL G Y V A + PG I +
Sbjct: 67 TISGLKPGVDYTITVYAYDTFFPGYEPNSPISINYR 102
|
| >3t04_D Monobody 7C12; engineered binding protein, antibody mimic, protein-protein SH2 domain, ATP-binding, phosphoprotein; 2.10A {Homo sapiens} Length = 103 | Back alignment and structure |
|---|
Score = 40.1 bits (94), Expect = 2e-04
Identities = 12/46 (26%), Positives = 17/46 (36%), Gaps = 2/46 (4%)
Query: 450 PSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATG 495
S P L+V D TP S +SW + Y + E+
Sbjct: 8 SSVPTK-LEVVDATPTSLKISWDAYYSSWQ-NVKYYRITYGETGGD 51
|
| >3k2m_C Monobody HA4; engineered binding protein, antibody mimic, protein-protein SH2 domain, ATP-binding, phosphoprotein; 1.75A {Homo sapiens} PDB: 3uyo_D 1ttf_A 1ttg_A 3rzw_A 1fna_A Length = 101 | Back alignment and structure |
|---|
Score = 73.3 bits (180), Expect = 3e-16
Identities = 23/96 (23%), Positives = 34/96 (35%), Gaps = 4/96 (4%)
Query: 14 PGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGN-WEKAVVVPAGETSC 72
PT LE + + W P+S S + Y + + GN + VP ++
Sbjct: 5 SSVPTKLEVVAATPTSLLISWDAPMS--SSSVYYYRITYGETGGNSPVQEFTVPYSSSTA 62
Query: 73 TVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAK 108
T+ GL G Y V A G +PI
Sbjct: 63 TISGLSPGVDYTITVYAWGEDSAGYMF-MYSPISIN 97
|
| >3k2m_C Monobody HA4; engineered binding protein, antibody mimic, protein-protein SH2 domain, ATP-binding, phosphoprotein; 1.75A {Homo sapiens} PDB: 3uyo_D 1ttf_A 1ttg_A 3rzw_A 1fna_A Length = 101 | Back alignment and structure |
|---|
Score = 38.2 bits (89), Expect = 6e-04
Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 3/46 (6%)
Query: 450 PSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATG 495
S P L+V TP S +SW P+ S + Y + E+
Sbjct: 5 SSVPTK-LEVVAATPTSLLISWDAPMS--SSSVYYYRITYGETGGN 47
|
| >2h41_A Fibronectin; beta sandwich, cell adhesion, structural protein; NMR {Homo sapiens} PDB: 2h45_A Length = 95 | Back alignment and structure |
|---|
Score = 72.5 bits (178), Expect = 4e-16
Identities = 18/97 (18%), Positives = 35/97 (36%), Gaps = 5/97 (5%)
Query: 10 PFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKD-KTGNWEKAVVVPAG 68
P T T+ + W ++G+ VE + + G+ + + +P+
Sbjct: 2 PLGSHLVATSESVTEITASSFVVSWVSA----SDTVSGFRVEYELSEEGDEPQYLDLPST 57
Query: 69 ETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPI 105
TS +P L+ G Y V ++ G T+
Sbjct: 58 ATSVNIPDLLPGRKYIVNVYQISEDGEQSLILSTSQT 94
|
| >2h41_A Fibronectin; beta sandwich, cell adhesion, structural protein; NMR {Homo sapiens} PDB: 2h45_A Length = 95 | Back alignment and structure |
|---|
Score = 39.4 bits (92), Expect = 2e-04
Identities = 11/48 (22%), Positives = 17/48 (35%), Gaps = 5/48 (10%)
Query: 448 DKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATG 495
V++IT S +SW D ++ + VE S G
Sbjct: 4 GSHLVATS-ESVTEITASSFVVSWVSASD----TVSGFRVEYELSEEG 46
|
| >1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334 | Back alignment and structure |
|---|
Score = 78.1 bits (192), Expect = 5e-16
Identities = 39/194 (20%), Positives = 64/194 (32%), Gaps = 27/194 (13%)
Query: 268 GKRIK--EFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPI 325
G + E V L + N+ +DSG Y + + V +
Sbjct: 47 GTGLVPSERVLVGPQRLQVLNASHEDSGAYSCRQRLTQRVLCHFSVRVTDA--------- 97
Query: 326 DYTTVTPESVSMSWKPPVDDGGTPITGAPKIT--SDLSIRDMTVLAGEEFTITVPFSGRP 383
P S + TGAP T + + + V A P +G P
Sbjct: 98 ------PSSGDDEDGEDEAEDTGVDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNP 151
Query: 384 KPTPIWTVNGDEVSPDGRIKFETSENQ----TIYRNKSAKRATDSGSYTIQLVNTVGSDS 439
P+ W NG E + RI +Q + +S + D G+YT + N GS
Sbjct: 152 TPSISWLKNGREFRGEHRIGGIKLRHQQWSLVM---ESVVPS-DRGNYTCVVENKFGSIR 207
Query: 440 ASCKVYVVDKPSPP 453
+ + V+++
Sbjct: 208 QTYTLDVLERSPHR 221
|
| >1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334 | Back alignment and structure |
|---|
Score = 72.7 bits (178), Expect = 3e-14
Identities = 48/327 (14%), Positives = 80/327 (24%), Gaps = 90/327 (27%)
Query: 174 WSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVTGTEF 233
W +G R L + S D+G YS +
Sbjct: 43 WVKDGTGLVPSER----VLVGPQRLQVLNASHEDSGAYSCRQRLTQRVLCHFSVRVTDAP 98
Query: 234 TDNNVHEGKAYEYRVSAVN-----------------------------AAGTEKPKIS-- 262
+ + +G+ AAG P IS
Sbjct: 99 SSGDDEDGEDEAEDTGVDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWL 158
Query: 263 LDALIGKRIKE-------FVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVV 315
+ G+ + + SL +++ V D G Y +N +G + V+
Sbjct: 159 KN---GREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVL 215
Query: 316 SKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTI 375
+ P + G P + T + G +
Sbjct: 216 ERSPHR-------------------PIL------QAGLPA--------NQTAVLGSDVEF 242
Query: 376 TVPFSGRPKPTPIWT----VNGDEVSPDGRIKFETSENQTIYRNKSAK--------RATD 423
+P W VNG +V PDG + D
Sbjct: 243 HCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFED 302
Query: 424 SGSYTIQLVNTVGSDSASCKVYVVDKP 450
+G YT N++G S + V+
Sbjct: 303 AGEYTCLAGNSIGFSHHSAWLVVLPAE 329
|
| >1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334 | Back alignment and structure |
|---|
Score = 44.2 bits (104), Expect = 7e-05
Identities = 25/135 (18%), Positives = 43/135 (31%), Gaps = 11/135 (8%)
Query: 353 APKITSDLSIRDMTVLAGEEFTIT-VPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQT 411
P + +G+ ++ P G P +W +G + P R+ Q
Sbjct: 7 VPGPEPGQQ-EQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPSERVLVGPQRLQV 65
Query: 412 IYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPS---PPQGPLDVSDITPESCS 468
+A DSG+Y+ + T V V D PS G + D ++ +
Sbjct: 66 ----LNA-SHEDSGAYSCRQRLTQRV-LCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGA 119
Query: 469 LSWKPPLDDGGSPIT 483
W P +
Sbjct: 120 PYWTRPERMDKKLLA 134
|
| >2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110 | Back alignment and structure |
|---|
Score = 72.8 bits (179), Expect = 6e-16
Identities = 29/101 (28%), Positives = 39/101 (38%), Gaps = 2/101 (1%)
Query: 353 APKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTI 412
P D+TV G+ + SG P P W ++G V PD K EN
Sbjct: 9 RPHFLQAPG--DLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVH 66
Query: 413 YRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPP 453
+ D+G YT N G +S S ++ V K S P
Sbjct: 67 SLIIEPVTSRDAGIYTCIATNRAGQNSFSLELVVAAKESGP 107
|
| >2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110 | Back alignment and structure |
|---|
Score = 39.3 bits (92), Expect = 3e-04
Identities = 15/44 (34%), Positives = 23/44 (52%)
Query: 279 TASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPT 322
SL I+ +D+GIY A N G + +E+VV +K P+
Sbjct: 65 VHSLIIEPVTSRDAGIYTCIATNRAGQNSFSLELVVAAKESGPS 108
|
| >2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524 | Back alignment and structure |
|---|
Score = 79.3 bits (195), Expect = 6e-16
Identities = 37/184 (20%), Positives = 57/184 (30%), Gaps = 42/184 (22%)
Query: 274 FVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPE 333
F A+L I ++ DSG++ A N +G + VV K P+ TTV
Sbjct: 267 FNYERQATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVVDKGFINIFPMINTTVF-- 324
Query: 334 SVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPI-WTVN 392
V GE + V + PKP W
Sbjct: 325 ---------------------------------VNDGENVDLIVEYEAFPKPEHQQWIYM 351
Query: 393 GDEVSPDGRIKFETSENQTIYRN-----KSAKRATDSGSYTIQLVNTVGSDSASCKVYVV 447
+ ++ I K T+ G+YT + N+ + + + VYV
Sbjct: 352 NRTFTDKWEDYPKSENESNIRYVSELHLTRLKG-TEGGTYTFLVSNSDVNAAIAFNVYVN 410
Query: 448 DKPS 451
KP
Sbjct: 411 TKPE 414
|
| >2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524 | Back alignment and structure |
|---|
Score = 72.0 bits (176), Expect = 2e-13
Identities = 37/320 (11%), Positives = 64/320 (20%), Gaps = 84/320 (26%)
Query: 174 WSINGQVCQIGGRADVQTTKSETV-----LDIPFCSRSDTGHYSLTLENNLGTATASAHV 228
W ++ + + L I +D+G + N G+A + +
Sbjct: 246 WKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDSGVFMCYANNTFGSANVTTTL 305
Query: 229 T----------GTEFTDNNVHEGKAYEYRVSAVNAAGTEKPKI-----------SLDALI 267
T V++G+ + V KP+
Sbjct: 306 EVVDKGFINIFPMINTTVFVNDGENVDLIVEY---EAFPKPEHQQWIYMNRTFTDKWEDY 362
Query: 268 GKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDY 327
K E + L++ + G Y N V V +KP
Sbjct: 363 PKSENESNIRYVSELHLTRLKGTEGGTYTFLVSNSDVNAAIAFNVYVNTKP--------- 413
Query: 328 TTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTP 387
+T + +G P+PT
Sbjct: 414 -----------------------------------EILTYDRLVNGMLQCVAAGFPEPTI 438
Query: 388 IWTVNGDEVSPDGRIKFETSENQTIYRNKSAK-----------RATDSGSYTIQLVNTVG 436
W +G+ + N VG
Sbjct: 439 DWYFCPGTEQRCSASVLPVDVQTLNSSGPPFGKLVVQSSIDSSAFKHNGTVECKAYNDVG 498
Query: 437 SDSASCKVYVVDKPSPPQGP 456
SA P
Sbjct: 499 KTSAYFNFAFKGNNKEQIHP 518
|
| >2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524 | Back alignment and structure |
|---|
Score = 65.5 bits (159), Expect = 2e-11
Identities = 45/286 (15%), Positives = 81/286 (28%), Gaps = 43/286 (15%)
Query: 188 DVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTAT-ASAHVTGTEFTDNNVHEGKAYEY 246
D + ++TG Y+ T ++ L + F + GK
Sbjct: 72 DETNENKQNEWITEKAEATNTGKYTCTNKHGLSNSIYVFVRDPAKLFLVDRSLYGKEDND 131
Query: 247 RVSAVNAAGTEKPKISLDALIGKRIKE---FVTSTTASLNIKNSVRK-DSGIYKIEAKND 302
+ E SL GK + + F+ A + IK+ R +
Sbjct: 132 TLVRCPLTDPEVTNYSLKGCQGKPLPKDLRFIPDPKAGIMIKSVKRAYHRLCLHCSVDQE 191
Query: 303 YGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSI 362
G + + ++ +P P+ +V+ S
Sbjct: 192 -GKSVLSEKFILKVRPAFKAVPV--VSVSKASY--------------------------- 221
Query: 363 RDMTVLAGEEFTITVPFSGRPKPTPI-WTVNGDEVSPDGRIKFETSENQTIYRNKSAK-- 419
+ GEEFT+T W + + + R +
Sbjct: 222 ---LLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTIS 278
Query: 420 --RATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQGPLDVSDIT 463
R DSG + NT GS + + + VVDK P+ + +
Sbjct: 279 SARVNDSGVFMCYANNTFGSANVTTTLEVVDKGFINIFPMINTTVF 324
|
| >2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524 | Back alignment and structure |
|---|
Score = 53.9 bits (129), Expect = 7e-08
Identities = 37/259 (14%), Positives = 69/259 (26%), Gaps = 55/259 (21%)
Query: 89 AVNAAGPGEASKPTAPIVAKPKNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSP 148
A N G + T +V K I V + G++ V
Sbjct: 292 ANNTFGSANVTT-TLEVVDKGF---INIFPMINTTVFVNDGENVDLIV------------ 335
Query: 149 LRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDT 208
+ W+ ++ F + + + + L + ++
Sbjct: 336 -EYEAFPKPEHQQWIYMNRTFTDKWE-------DYPKSENESNIRYVSELHLTRLKGTEG 387
Query: 209 GHYSLTLENNLGTATASAHVTGTEFTDNNVHEG---KAYEYRVSAV---NAAGTEKPKI- 261
G Y+ + N+ A + +V V+ Y+ V+ + AAG +P I
Sbjct: 388 GTYTFLVSNSDVNAAIAFNVY--------VNTKPEILTYDRLVNGMLQCVAAGFPEPTID 439
Query: 262 ----------------SLDALIGKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGI 305
+D +I +S K +G + +A ND G
Sbjct: 440 WYFCPGTEQRCSASVLPVDVQTLNSSGPPFGKLVVQSSIDSSAFKHNGTVECKAYNDVGK 499
Query: 306 DMADIEVVVVSKPGPPTGP 324
A P
Sbjct: 500 TSAYFNFAFKGNNKEQIHP 518
|
| >2ha1_A Fibronectin; beta sandwich, protein-protein complex, rigid BODY docking, cell adhesion, structural protein; NMR {Homo sapiens} Length = 201 | Back alignment and structure |
|---|
Score = 75.5 bits (185), Expect = 7e-16
Identities = 18/97 (18%), Positives = 36/97 (37%), Gaps = 5/97 (5%)
Query: 8 KNPFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKD-KTGNWEKAVVVP 66
+ P T T+ + W ++G+ VE + + G+ + + +P
Sbjct: 106 ETTPFSPLVATSESVTEITASSFVVSWVSA----SDTVSGFRVEYELSEEGDEPQYLDLP 161
Query: 67 AGETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTA 103
+ TS +P L+ G Y V ++ G T+
Sbjct: 162 STATSVNIPDLLPGRKYIVNVYQISEDGEQSLILSTS 198
|
| >2ha1_A Fibronectin; beta sandwich, protein-protein complex, rigid BODY docking, cell adhesion, structural protein; NMR {Homo sapiens} Length = 201 | Back alignment and structure |
|---|
Score = 73.2 bits (179), Expect = 4e-15
Identities = 19/100 (19%), Positives = 36/100 (36%), Gaps = 4/100 (4%)
Query: 17 PTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGN-WEKAVVVPAGETSCTVP 75
+ T + +QW P S I+ Y++ + K K +P S T+
Sbjct: 5 EVFITETPSQPNSHPIQWNAP---QPSHISKYILRWRPKNSVGRWKEATIPGHLNSYTIK 61
Query: 76 GLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAPR 115
GL G Y+ Q+ ++ G E ++ + +
Sbjct: 62 GLKPGVVYEGQLISIQQYGHQEVTRFDFTTTSTSTPVTSN 101
|
| >2ha1_A Fibronectin; beta sandwich, protein-protein complex, rigid BODY docking, cell adhesion, structural protein; NMR {Homo sapiens} Length = 201 | Back alignment and structure |
|---|
Score = 40.8 bits (95), Expect = 3e-04
Identities = 26/182 (14%), Positives = 46/182 (25%), Gaps = 36/182 (19%)
Query: 319 GPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVP 378
GP I T P S + W P + I+ + +
Sbjct: 2 GPVEVFITETPSQPNSHPIQWNAP---QPSHISK--------------------YILRWR 38
Query: 379 FSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIY--RNKSAKRATDSGSYTIQLVNTVG 436
T+ G S + + +Y + S ++ T
Sbjct: 39 PKNSVGRWKEATIPGHLNS----YTIKGLKPGVVYEGQLISIQQYGHQEVTRFDFTTTST 94
Query: 437 SDSASCKVYVVDKPSPPQGP---LDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESA 493
S + + V++IT S +SW ++ + VE S
Sbjct: 95 STPVTSNTVTGETTPFSPLVATSESVTEITASSFVVSWVSA----SDTVSGFRVEYELSE 150
Query: 494 TG 495
G
Sbjct: 151 EG 152
|
| >3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207 | Back alignment and structure |
|---|
Score = 75.4 bits (185), Expect = 7e-16
Identities = 24/178 (13%), Positives = 52/178 (29%), Gaps = 24/178 (13%)
Query: 270 RIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTT 329
++ + + ++ +D G Y + ++ + + + +V
Sbjct: 51 KMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVG--------------- 95
Query: 330 VTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPI- 388
+ + P L V + + K T I
Sbjct: 96 --DVFKKLQKEAEFQRQEWIRKQGPHFVEYL---SWEVTGECNVLLKCKVANIKKETHIV 150
Query: 389 WTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYV 446
W + E+S D + F+ + S K D+G Y + L + G D + K+
Sbjct: 151 WYKDEREISVDEKHDFKDGICTLLITEFSKK---DAGIYEVILKDDRGKDKSRLKLVD 205
|
| >3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207 | Back alignment and structure |
|---|
Score = 54.2 bits (130), Expect = 1e-08
Identities = 17/105 (16%), Positives = 32/105 (30%), Gaps = 3/105 (2%)
Query: 363 RDMTVLAGEEFTITV-PFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAK-R 420
+ +L + + + N E+ + K N I K +
Sbjct: 10 LAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQ 69
Query: 421 ATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQGPLDVSDITPE 465
D G+YT QL + ++ ++ V V D Q +
Sbjct: 70 DEDEGTYTFQLQDGKATNHSTV-VLVGDVFKKLQKEAEFQRQEWI 113
|
| >3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207 | Back alignment and structure |
|---|
Score = 51.5 bits (123), Expect = 1e-07
Identities = 26/169 (15%), Positives = 58/169 (34%), Gaps = 28/169 (16%)
Query: 174 WSINGQVCQIGGRADVQTTKSETV--LDIPFCSRSDTGHYSLTLENNLGTATASAHVTGT 231
+ N + G + + ++ + + + D G Y+ L++ T ++ + G
Sbjct: 37 YIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGD 96
Query: 232 EFTD--------NNVHEGKAYEYRVSAVNAAGTEKPKISLDALI--------------GK 269
F K + V ++ T + + L + +
Sbjct: 97 VFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEVTGECNVLLKCKVANIKKETHIVWYKDER 156
Query: 270 RIKE----FVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVV 314
I +L I +KD+GIY++ K+D G D + +++V
Sbjct: 157 EISVDEKHDFKDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVD 205
|
| >2dm4_A Sortilin-related receptor; beta-sandwich, sorting protein-related receptor containing LDLR class A repeats, sorla; NMR {Homo sapiens} Length = 108 | Back alignment and structure |
|---|
Score = 72.5 bits (178), Expect = 8e-16
Identities = 22/94 (23%), Positives = 33/94 (35%), Gaps = 7/94 (7%)
Query: 12 DEPGKPTDLEATDWDKDH--VDLQWTPPISDGGSPITGYVVEMKDK-TGNWEKAVVVPAG 68
P P +L+ + + + W PPI G I Y+VE + W A
Sbjct: 6 SGPDAPRNLQLSLPREAEGVIVGHWAPPIHTHG-LIREYIVEYSRSGSKMWAS---QRAA 61
Query: 69 ETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPT 102
+ L+ Y +V AV + G G S
Sbjct: 62 SNFTEIKNLLVNTLYTVRVAAVTSRGIGNWSDSK 95
|
| >3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens} Length = 99 | Back alignment and structure |
|---|
Score = 71.5 bits (176), Expect = 1e-15
Identities = 32/101 (31%), Positives = 51/101 (50%), Gaps = 9/101 (8%)
Query: 349 PITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSE 408
PI+ P I + L +D TV + V +G P+PT IWT +G ++ G+ K +
Sbjct: 2 PISSKPVIVTGL--QDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDK 59
Query: 409 NQ---TIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYV 446
I++ +DSG YT + N+ GS S+SCK+ +
Sbjct: 60 GGFFLEIHK----TDTSDSGLYTCTVKNSAGSVSSSCKLTI 96
|
| >3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens} Length = 99 | Back alignment and structure |
|---|
Score = 41.1 bits (97), Expect = 6e-05
Identities = 16/56 (28%), Positives = 31/56 (55%)
Query: 174 WSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVT 229
W+ +G+ GG+ + K L+I SD+G Y+ T++N+ G+ ++S +T
Sbjct: 40 WTKDGKAITQGGKYKLSEDKGGFFLEIHKTDTSDSGLYTCTVKNSAGSVSSSCKLT 95
|
| >2ekj_A Collagen alpha-1(XX) chain; KIAA1510, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 105 | Back alignment and structure |
|---|
Score = 71.7 bits (176), Expect = 1e-15
Identities = 26/91 (28%), Positives = 38/91 (41%), Gaps = 5/91 (5%)
Query: 14 PGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGN-WEKAVVVPAGETSC 72
P++L D + + WTPP + Y + +G EK+V VP +
Sbjct: 8 RSPPSNLALASETPDSLQVSWTPP----LGRVLHYWLTYAPASGLGPEKSVSVPGARSHV 63
Query: 73 TVPGLIEGETYQFQVRAVNAAGPGEASKPTA 103
T+P L Y+ V A+ AAG EA T
Sbjct: 64 TLPDLQAATKYRVLVSAIYAAGRSEAVSATG 94
|
| >1x5i_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 126 | Back alignment and structure |
|---|
Score = 71.7 bits (176), Expect = 2e-15
Identities = 20/101 (19%), Positives = 35/101 (34%), Gaps = 5/101 (4%)
Query: 14 PGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVVVPAGETSCT 73
P P+ L + + WTPP + + GY + + + + + V + T
Sbjct: 28 PEVPSSLHVRPLV-TSIVVSWTPP-ENQNIVVRGYAIGYGIGSPHAQT-IKVDYKQRYYT 84
Query: 74 VPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAP 114
+ L Y ++A N G G V +P P
Sbjct: 85 IENLDPSSHYVITLKAFNNVGEGIPL--YESAVTRPHTSGP 123
|
| >3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423 | Back alignment and structure |
|---|
Score = 76.6 bits (188), Expect = 3e-15
Identities = 31/264 (11%), Positives = 55/264 (20%), Gaps = 63/264 (23%)
Query: 204 SRSDTGHYSLTLENNLGTATASAHVTG------TEFTDNNVHEGKAYEYRVSAVNAAGTE 257
N LG T + G+ R AV+
Sbjct: 199 HELFGTDIRCCARNELGRECTRLFTIDLNQTPQTTLPQLFLKVGEPLWIRCKAVH--VNH 256
Query: 258 KPKIS-----------LDALIGKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGID 306
++ + + + R D+G Y +
Sbjct: 257 GFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPS-- 314
Query: 307 MADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMT 366
V +V K I + S D
Sbjct: 315 -QSALVTIVEKG------------------------------------FINATNSSEDYE 337
Query: 367 VLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGS 426
+ EEF +V F P+ WT + P + + + + + N G
Sbjct: 338 IDQYEEFCFSVRFKAYPQIRCTWTFSRKSF-PCEQKGLDNGYSISKFCNHK----HQPGE 392
Query: 427 YTIQLVNTVGSDSASCKVYVVDKP 450
Y N + + +
Sbjct: 393 YIFHAENDDAQFTKMFTLNIRSGT 416
|
| >3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423 | Back alignment and structure |
|---|
Score = 68.9 bits (168), Expect = 1e-12
Identities = 33/317 (10%), Positives = 64/317 (20%), Gaps = 72/317 (22%)
Query: 204 SRSDTGHYSLTLENNLGTATASAHVTGTEFTDNNVHEGKAYEYRVSA-----VNAAGTEK 258
S + Y + E+ + + V+E A E VSA V
Sbjct: 23 SVGKSSSYPMVSESPEDLG-CALRPQSSGT----VYEAAAVEVDVSASITLQVLVDAPGN 77
Query: 259 PKIS----LDALIGKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVV 314
+L + + S+ I +G Y + +++ V +
Sbjct: 78 ISCLWVFKHSSLNCQPHFDLQNRGVVSMVILKMTETQAGEYLLFIQSEATNYTILFTVSI 137
Query: 315 VSKPGPPTGPIDYTTVTPESV-----------SMSW----KPPVDDGGTPITGAPKITSD 359
+ + + + + W K
Sbjct: 138 RNTLLYTLRRPYFRKMENQDALVCISESVPEPIVEWVLCDSQGESCKEESPAVVKKEEKV 197
Query: 360 L----------------------------------SIRDMTVLAGEEFTIT-VPFSGRPK 384
L ++ + + GE I
Sbjct: 198 LHELFGTDIRCCARNELGRECTRLFTIDLNQTPQTTLPQLFLKVGEPLWIRCKAVHVNHG 257
Query: 385 PTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAK-----RATDSGSYTIQLVNTVGSDS 439
W + + + T D+G YT
Sbjct: 258 FGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPSQ-- 315
Query: 440 ASCKVYVVDKPSPPQGP 456
S V +V+K
Sbjct: 316 -SALVTIVEKGFINATN 331
|
| >3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423 | Back alignment and structure |
|---|
Score = 61.2 bits (148), Expect = 3e-10
Identities = 12/119 (10%), Positives = 31/119 (26%), Gaps = 4/119 (3%)
Query: 342 PVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGR 401
P D G + + + V T+ V + +W ++
Sbjct: 37 PEDLGCALRPQSSGTVYEA--AAVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPH 94
Query: 402 IKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQGPLDVS 460
+ ++ K T +G Y + + + + + V + +
Sbjct: 95 FDLQNRGVVSMVILKM--TETQAGEYLLFIQSEATNYTILFTVSIRNTLLYTLRRPYFR 151
|
| >3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423 | Back alignment and structure |
|---|
Score = 46.6 bits (110), Expect = 1e-05
Identities = 21/159 (13%), Positives = 48/159 (30%), Gaps = 18/159 (11%)
Query: 174 WSINGQV------CQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAH 227
W + + ++ + +T + +R+DTG+Y+ + + +A
Sbjct: 262 WELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPS-QSALVT 320
Query: 228 VTGTEFTDNNVHEGKAYEYRVSA-----VNAAGTEKPKIS---LDALIGKRIKEFVTSTT 279
+ F N + + YE V + + + K
Sbjct: 321 IVEKGFI-NATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGLDNGY- 378
Query: 280 ASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKP 318
S++ + + G Y A+ND + + S
Sbjct: 379 -SISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRSGT 416
|
| >2rb8_A Tenascin; beta sheet,loop design, alternative splicing, cell adhesion, coiled coil, EGF-like domain, extracellular matrix, glycoprotein; 1.45A {Homo sapiens} PDB: 2rbl_A 1ten_A Length = 104 | Back alignment and structure |
|---|
Score = 70.5 bits (173), Expect = 3e-15
Identities = 14/88 (15%), Positives = 28/88 (31%), Gaps = 5/88 (5%)
Query: 17 PTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTG-NWEKAVVVPAGETSCTVP 75
P+ +E D + W PP P+ G+ + K + + E ++
Sbjct: 6 PSQIEVKDVTDTTALITWMPP----SQPVDGFELTYGIKDVPGDRTTIDLTEDENQYSIG 61
Query: 76 GLIEGETYQFQVRAVNAAGPGEASKPTA 103
L Y+ + + +K T
Sbjct: 62 NLKPDTEYEVSLISRRGDMSSNPAKETF 89
|
| >2rb8_A Tenascin; beta sheet,loop design, alternative splicing, cell adhesion, coiled coil, EGF-like domain, extracellular matrix, glycoprotein; 1.45A {Homo sapiens} PDB: 2rbl_A 1ten_A Length = 104 | Back alignment and structure |
|---|
Score = 38.1 bits (89), Expect = 7e-04
Identities = 10/50 (20%), Positives = 20/50 (40%), Gaps = 6/50 (12%)
Query: 449 KPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATGVSD 498
+ P ++V D+T + ++W PP P+ + + Y D
Sbjct: 2 RLDAPSQ-IEVKDVTDTTALITWMPPS----QPVDGFELT-YGIKDVPGD 45
|
| >2ee3_A Collagen alpha-1(XX) chain; KIAA1510, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 108 | Back alignment and structure |
|---|
Score = 70.5 bits (173), Expect = 3e-15
Identities = 16/90 (17%), Positives = 22/90 (24%), Gaps = 4/90 (4%)
Query: 14 PGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVVVPAGETSCT 73
P L +D D + W P+ V G P TS
Sbjct: 8 LAPPRHLGFSDVSHDAARVFWEGA----PRPVRLVRVTYVSSEGGHSGQTEAPGNATSAM 63
Query: 74 VPGLIEGETYQFQVRAVNAAGPGEASKPTA 103
+ L TY +V + G
Sbjct: 64 LGPLSSSTTYTVRVTCLYPGGGSSTLTGRV 93
|
| >2ocf_D Fibronectin; estrogen receptor, LBD, monobody, estradiol, hormone-growth complex; HET: CME EST; 2.95A {Homo sapiens} Length = 121 | Back alignment and structure |
|---|
Score = 71.1 bits (174), Expect = 4e-15
Identities = 21/101 (20%), Positives = 32/101 (31%), Gaps = 5/101 (4%)
Query: 9 NPFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGN-WEKAVVVPA 67
PT LE + + W P + Y + + GN + VP
Sbjct: 24 FQGSVSDVPTKLEVVAATPTSLLISWDAP----AVTVRYYRITYGETGGNSPVQEFTVPG 79
Query: 68 GETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAK 108
+++ T+ GL G Y V AV A I +
Sbjct: 80 SKSTATISGLKPGVDYTITVYAVTGLRLMLAGSKPISINYR 120
|
| >1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382 | Back alignment and structure |
|---|
Score = 76.1 bits (187), Expect = 4e-15
Identities = 53/297 (17%), Positives = 97/297 (32%), Gaps = 60/297 (20%)
Query: 166 SEPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATAS 225
P L++ W +N I +++ L I SD G+YS +++ T S
Sbjct: 128 HYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTEASDLGNYSCFATSHIDFITKS 187
Query: 226 AHVTGTEFTDNNVHEGKAYEYRVSAV----------------NAAGTEKPKISLDALIGK 269
++ + + + A G P+I L G
Sbjct: 188 VFSKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGS 247
Query: 270 RIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTT 329
+ ++++S L+I+N +D G Y+ EA+N G D +++ ++P
Sbjct: 248 QTSKWLSSEP-LLHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIHAQP--------DWL 298
Query: 330 VTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIW 389
D G + + SG+P+P W
Sbjct: 299 DVIT------------------------------DTEADIGSDLRWSCVASGKPRPAVRW 328
Query: 390 TVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYV 446
+G ++ RI+ + +K DSG Y N G+ AS ++ V
Sbjct: 329 LRDGQPLASQNRIEV---SGGELRFSKLVL--EDSGMYQCVAENKHGTVYASAELTV 380
|
| >1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382 | Back alignment and structure |
|---|
Score = 65.3 bits (159), Expect = 1e-11
Identities = 47/302 (15%), Positives = 77/302 (25%), Gaps = 52/302 (17%)
Query: 174 WSINGQVCQIGGRADVQTTKSE-TVLDIPFCSRSDTGHYSLTLENNLGTATA-SAHVT-- 229
W +NG ++ D + ++ D G Y N GT + A +
Sbjct: 41 WKMNGT--ELKMGPDSRYRLVAGDLVISNPVKAKDAGSYQCVATNARGTVVSREASLRFG 98
Query: 230 ------GTEFTDNNVHEGKAYEYRVSAVNAAGTEKPKIS-----LDALIGKRIKEFVTST 278
E + EG + S I + FV+ T
Sbjct: 99 FLQEFSAEERDPVKITEGWGVMFTCSPP--PHYPALSYRWLLNEFPNFIPADGRRFVSQT 156
Query: 279 TASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMS 338
T +L I + D G Y A + +SV
Sbjct: 157 TGNLYIAKTEASDLGNYSCFATSHID-------------------------FITKSVFSK 191
Query: 339 WKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSP 398
+ AP I + D L G+ T+ G P P W
Sbjct: 192 FSQLSLAAEDARQYAPSIKAKFP-ADTYALTGQMVTLECFAFGNPVPQIKWRKLDGS-QT 249
Query: 399 DGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQGPLD 458
+ ++ D G+Y + N G D+ ++ + +P D
Sbjct: 250 SKWLSS----EPLLHIQNV--DFEDEGTYECEAENIKGRDTYQGRIIIHAQPDWLDVITD 303
Query: 459 VS 460
Sbjct: 304 TE 305
|
| >1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382 | Back alignment and structure |
|---|
Score = 51.0 bits (122), Expect = 5e-07
Identities = 32/147 (21%), Positives = 49/147 (33%), Gaps = 23/147 (15%)
Query: 184 GGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVT-------GTEFTDN 236
G + SE +L I D G Y EN G T + TD
Sbjct: 245 DGSQTSKWLSSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIHAQPDWLDVITDT 304
Query: 237 NVHEGKAYEYRVSAV---NAAGTEKPKIS--LDALIGKRIK--EFVTSTTASLNIKNSVR 289
G A+G +P + D G+ + + + L V
Sbjct: 305 EADIGS------DLRWSCVASGKPRPAVRWLRD---GQPLASQNRIEVSGGELRFSKLVL 355
Query: 290 KDSGIYKIEAKNDYGIDMADIEVVVVS 316
+DSG+Y+ A+N +G A E+ V +
Sbjct: 356 EDSGMYQCVAENKHGTVYASAELTVQA 382
|
| >3p4l_A Neogenin; iron homeostasis, hemojuvelin receptor, FNIII domain, fibron type III, cell adhesion; 1.80A {Homo sapiens} PDB: 1x5k_A Length = 211 | Back alignment and structure |
|---|
Score = 72.9 bits (179), Expect = 6e-15
Identities = 20/123 (16%), Positives = 31/123 (25%), Gaps = 11/123 (8%)
Query: 14 PGKPTDLEATDWDKDHVDLQWTPP---ISDGGSPITGYVVEMKDKTGNWEKAVVVPAGET 70
P ++A+ D + + W + Y V K K A
Sbjct: 5 MMPPVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTKYKNANATTL 64
Query: 71 SCTVPGLIEGETYQFQVRAVNAAGPGEASKPT-------APIVAKPKNLAPRIDRSTLND 123
S V GL Y+F V S P PK++
Sbjct: 65 SYLVTGLKPNTLYEFSVMVTKGRRSSTWSMTAHGTTFELVPTSP-PKDVTVVSKEGKPKT 123
Query: 124 VKI 126
+ +
Sbjct: 124 IIV 126
|
| >3p4l_A Neogenin; iron homeostasis, hemojuvelin receptor, FNIII domain, fibron type III, cell adhesion; 1.80A {Homo sapiens} PDB: 1x5k_A Length = 211 | Back alignment and structure |
|---|
Score = 66.7 bits (163), Expect = 8e-13
Identities = 19/105 (18%), Positives = 34/105 (32%), Gaps = 7/105 (6%)
Query: 4 SVLIKNPFDEPGKP---TDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWE 60
+ P P + + + + + W PP G ITGY++
Sbjct: 95 TAHGTTFELVPTSPPKDVTVVSKEGKPKTIIVNWQPPSEANG-KITGYIIYYSTDVNAEI 153
Query: 61 KA---VVVPAGETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPT 102
V + + L Y F+++A N+ G G S+
Sbjct: 154 HDWVIEPVVGNRLTHQIQELTLDTPYYFKIQARNSKGMGPMSEAV 198
|
| >3t1w_A Four-domain fibronectin fragment; human fibronectin, FN type-III domain, oncofetal splice VARI extra-domain B, EIIIB, ED-B, angiogenesis, integrin; 2.40A {Homo sapiens} Length = 375 | Back alignment and structure |
|---|
Score = 75.2 bits (185), Expect = 8e-15
Identities = 19/99 (19%), Positives = 33/99 (33%), Gaps = 5/99 (5%)
Query: 14 PGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDK-TGNWEKAVVVPAGETSC 72
PT ++ +D + + W P + ITGY + + + VP S
Sbjct: 278 LDSPTGIDFSDITANSFTVHWIAP----RATITGYRIRHHPEHFSGRPREDRVPHSRNSI 333
Query: 73 TVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKN 111
T+ L G Y + A+N V+ +
Sbjct: 334 TLTNLTPGTEYVVSIVALNGREESPLLIGQQSTVSAHHH 372
|
| >3t1w_A Four-domain fibronectin fragment; human fibronectin, FN type-III domain, oncofetal splice VARI extra-domain B, EIIIB, ED-B, angiogenesis, integrin; 2.40A {Homo sapiens} Length = 375 | Back alignment and structure |
|---|
Score = 73.7 bits (181), Expect = 2e-14
Identities = 25/98 (25%), Positives = 33/98 (33%), Gaps = 4/98 (4%)
Query: 13 EPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKD-KTGNWEKAVVVPAGETS 71
E + TDL D + L+WTP S I GY + + G V +
Sbjct: 95 EVPQLTDLSFVDITDSSIGLRWTPL---NSSTIIGYRITVVAAGEGIPIFEDFVDSSVGY 151
Query: 72 CTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKP 109
TV GL G Y V + G + T P
Sbjct: 152 YTVTGLEPGIDYDISVITLINGGESAPTTLTQQTAVPP 189
|
| >3t1w_A Four-domain fibronectin fragment; human fibronectin, FN type-III domain, oncofetal splice VARI extra-domain B, EIIIB, ED-B, angiogenesis, integrin; 2.40A {Homo sapiens} Length = 375 | Back alignment and structure |
|---|
Score = 71.4 bits (175), Expect = 1e-13
Identities = 16/91 (17%), Positives = 30/91 (32%), Gaps = 4/91 (4%)
Query: 14 PGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTG-NWEKAVVVPAGETSC 72
PTDL T+ D + + W PP +T ++V + + + +
Sbjct: 187 VPPPTDLRFTNIGPDTMRVTWAPP---PSIDLTNFLVRYSPVKNEEDVAELSISPSDNAV 243
Query: 73 TVPGLIEGETYQFQVRAVNAAGPGEASKPTA 103
+ L+ G Y V +V +
Sbjct: 244 VLTNLLPGTEYVVSVSSVYEQHESTPLRGRQ 274
|
| >3t1w_A Four-domain fibronectin fragment; human fibronectin, FN type-III domain, oncofetal splice VARI extra-domain B, EIIIB, ED-B, angiogenesis, integrin; 2.40A {Homo sapiens} Length = 375 | Back alignment and structure |
|---|
Score = 64.8 bits (158), Expect = 2e-11
Identities = 24/100 (24%), Positives = 33/100 (33%), Gaps = 7/100 (7%)
Query: 17 PTDLEAT-DWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNW--EKAVVVPAGETSCT 73
PT+L + D + + W ITGY + G VV A ++SCT
Sbjct: 6 PTNLHLEANPDTGVLTVSWERS---TTPDITGYRITTTPTNGQQGNSLEEVVHADQSSCT 62
Query: 74 VPGLIEGETYQFQVRAVNAAGPGEASKP-TAPIVAKPKNL 112
L G Y V V P V + +L
Sbjct: 63 FDNLSPGLEYNVSVYTVKDDKESVPISDTIIPEVPQLTDL 102
|
| >3t1w_A Four-domain fibronectin fragment; human fibronectin, FN type-III domain, oncofetal splice VARI extra-domain B, EIIIB, ED-B, angiogenesis, integrin; 2.40A {Homo sapiens} Length = 375 | Back alignment and structure |
|---|
Score = 42.9 bits (101), Expect = 2e-04
Identities = 27/187 (14%), Positives = 55/187 (29%), Gaps = 48/187 (25%)
Query: 310 IEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLA 369
+ + PPT + +T + P+++ ++W PP +T
Sbjct: 179 TTLTQQTAVPPPTD-LRFTNIGPDTMRVTWAPP---PSIDLTN----------------- 217
Query: 370 GEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTI 429
F + + +++ + + + T Y ++
Sbjct: 218 ---FLVRYSPVKNEEDVAELSISPSDNA----VVLTNLLPGTEY------------VVSV 258
Query: 430 QLVNTVG-SDSASCKVYVVDKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVE 488
V S + P G +D SDIT S ++ W P + IT Y +
Sbjct: 259 SSVYEQHESTPLRGRQKTG--LDSPTG-IDFSDITANSFTVHWIAP----RATITGYRIR 311
Query: 489 KYESATG 495
+
Sbjct: 312 HHPEHFS 318
|
| >3t1w_A Four-domain fibronectin fragment; human fibronectin, FN type-III domain, oncofetal splice VARI extra-domain B, EIIIB, ED-B, angiogenesis, integrin; 2.40A {Homo sapiens} Length = 375 | Back alignment and structure |
|---|
Score = 42.5 bits (100), Expect = 2e-04
Identities = 41/293 (13%), Positives = 72/293 (24%), Gaps = 109/293 (37%)
Query: 210 HYSLTLENNLGTATASAHVTGTEFTDNNVHEGKAYEYRVSAVNAAGTEKPKISLDALIGK 269
+ T + H + T +N+ G Y V V P
Sbjct: 38 TTTPTNGQQGNSLEEVVHADQSSCTFDNLSPGLEYNVSVYTVKDDKESVP---------- 87
Query: 270 RIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTT 329
I ++ + T + +
Sbjct: 88 ----------------------------------------ISDTIIPEVPQLTD-LSFVD 106
Query: 330 VTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIW 389
+T S+ + W P + I G + ITV +G P
Sbjct: 107 ITDSSIGLRWTPL---NSSTIIG--------------------YRITVVAAGEGIPIFED 143
Query: 390 TVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSG-----SYTIQL--VNTVGSDSASC 442
V+ T +G Y I + + G +SA
Sbjct: 144 FVDSSVGY-----------------------YTVTGLEPGIDYDISVITLINGG-ESAPT 179
Query: 443 KVYVVDKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATG 495
+ PP L ++I P++ ++W PP +TN++V
Sbjct: 180 TLTQQTAVPPPTD-LRFTNIGPDTMRVTWAPPP---SIDLTNFLVRYSPVKNE 228
|
| >2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212 | Back alignment and structure |
|---|
Score = 72.2 bits (177), Expect = 1e-14
Identities = 39/195 (20%), Positives = 58/195 (29%), Gaps = 43/195 (22%)
Query: 268 GKRIKEFVTSTTASLNIKN-SVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPID 326
+ EF + + L I+ +D IY+ A N+ G + V+ + P G
Sbjct: 51 RFEVIEFDDGSGSVLRIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIPRGF-- 108
Query: 327 YTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPT 386
P I + V T+ SG P P
Sbjct: 109 ---------------------------PTIDMGP--QLKVVERTRTATMLCAASGNPDPE 139
Query: 387 PIWTVNGDEVSPD---GRIKFETSENQ---TIYRNKSAKRATDSGSYTIQLVNTVGSD-S 439
W + V GRIK SE+ I + +D G Y N+ G+ S
Sbjct: 140 ITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQ----SEESDQGKYECVATNSAGTRYS 195
Query: 440 ASCKVYVVDKPSPPQ 454
A +YV
Sbjct: 196 APANLYVRGTKHHHH 210
|
| >2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212 | Back alignment and structure |
|---|
Score = 69.8 bits (171), Expect = 6e-14
Identities = 24/105 (22%), Positives = 42/105 (40%), Gaps = 3/105 (2%)
Query: 353 APKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQ-T 411
P+ T D T ++G + +G P+P +W G +VS E + +
Sbjct: 6 PPRFTRTPV--DQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGS 63
Query: 412 IYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQGP 456
+ R + + D Y N VG S S ++ V+ + P+G
Sbjct: 64 VLRIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIPRGF 108
|
| >2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212 | Back alignment and structure |
|---|
Score = 50.2 bits (120), Expect = 3e-07
Identities = 33/170 (19%), Positives = 54/170 (31%), Gaps = 28/170 (16%)
Query: 174 WSINGQVCQIGGRADVQTT-KSETVLDI-PFCSRSDTGHYSLTLENNLGTATASAHVT-- 229
W+ G+ ++ S +VL I P + D Y NN+G + S +T
Sbjct: 40 WNKKGKKVSNQRFEVIEFDDGSGSVLRIQPLRTPRDEAIYECVASNNVGEISVSTRLTVL 99
Query: 230 ------------GTEFTDNNVHEGKAYEYRVSAVNAAGTEKPKIS--------LDALIGK 269
V + +A G P+I+ +
Sbjct: 100 REDQIPRGFPTIDMGPQLKVVERTRTATMLCAAS---GNPDPEITWFKDFLPVDTSNNNG 156
Query: 270 RIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDM-ADIEVVVVSKP 318
RIK+ + + +L I+ S D G Y+ A N G A + V
Sbjct: 157 RIKQLRSESIGALQIEQSEESDQGKYECVATNSAGTRYSAPANLYVRGTK 206
|
| >1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395 | Back alignment and structure |
|---|
Score = 74.6 bits (183), Expect = 1e-14
Identities = 54/310 (17%), Positives = 84/310 (27%), Gaps = 56/310 (18%)
Query: 174 WSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTAT-ASAHVT--- 229
W +G+ + K E L SD GHY E G A+
Sbjct: 41 WKKDGKSYNWQEH-NAALRKDEGSLVFLRPQASDEGHYQCFAETPAGVASSRVISFRKTY 99
Query: 230 ----GTEFTDNNVHEGKAYEYRVSAVNAAGTEKPKIS------------LDALIGKRIKE 273
+ + EG+ ++ KP I+ +RI
Sbjct: 100 LIASPAKTHEKTPIEGRPFQLDCVL--PNAYPKPLITWKKRLSGADPNADVTDFDRRITA 157
Query: 274 FVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPE 333
+ D Y AKN + + + +
Sbjct: 158 GPDGNLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEI-------------KGVTK 204
Query: 334 SVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNG 393
S PV K DM AG+ I + P P + NG
Sbjct: 205 DNSGYKGEPV------PQYVSK--------DMMAKAGDVTMIYCMYGSNPMGYPNYFKNG 250
Query: 394 DEVSPDGRIKF---ETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSD-SASCKVYVVDK 449
+V+ + + + + + + D G YT ++ N VG S K+ VV
Sbjct: 251 KDVNGNPEDRITRHNRTSGKRLLFKTT--LPEDEGVYTCEVDNGVGKPQKHSLKLTVVSA 308
Query: 450 PSPPQGPLDV 459
P Q P V
Sbjct: 309 PKYEQKPEKV 318
|
| >1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395 | Back alignment and structure |
|---|
Score = 65.3 bits (159), Expect = 1e-11
Identities = 45/293 (15%), Positives = 74/293 (25%), Gaps = 66/293 (22%)
Query: 177 NGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTA-TASAHVTGTEFTD 235
N V R + + SD Y T +N T
Sbjct: 145 NADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTK 204
Query: 236 NNVHEGKAYEYRVSAVN--------------AAGTEKPKIS-------LDALIGKRIKEF 274
+N + + + + ++ RI
Sbjct: 205 DNSGYKGEPVPQYVSKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRH 264
Query: 275 VTSTTASLNIKNSVRKDSGIYKIEAKNDYG-IDMADIEVVVVSKPGPPTGPIDYTTVTPE 333
++ L K ++ +D G+Y E N G +++ VVS P PE
Sbjct: 265 NRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVVSAP--------KYEQKPE 316
Query: 334 SVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNG 393
V + V G++ TI +G P P +W+ N
Sbjct: 317 KV-----------------------------IVVKQGQDVTIPCKVTGLPAPNVVWSHNA 347
Query: 394 DEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYV 446
+ GR + + D G Y + N G V V
Sbjct: 348 KPL-SGGRATV---TDSGLVIKGVKN--GDKGYYGCRATNEHGDKYFETLVQV 394
|
| >1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395 | Back alignment and structure |
|---|
Score = 47.6 bits (113), Expect = 6e-06
Identities = 17/118 (14%), Positives = 34/118 (28%), Gaps = 7/118 (5%)
Query: 349 PITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPI-WTVNGDEVSPDGRIKFETS 407
P+ P + + ++ + G + W +G +
Sbjct: 2 PVDKYPVLKDQPA--EVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRK 59
Query: 408 ENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQGPLDVSDITPE 465
+ ++ + +A+D G Y G AS +V K P + TP
Sbjct: 60 DEGSLVFLRP--QASDEGHYQCFAETPAG--VASSRVISFRKTYLIASPAKTHEKTPI 113
|
| >1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395 | Back alignment and structure |
|---|
Score = 45.7 bits (108), Expect = 2e-05
Identities = 38/255 (14%), Positives = 64/255 (25%), Gaps = 62/255 (24%)
Query: 84 QFQVRAVNAAGPGEASKPTAPIV----AKPKNLAPRIDRSTLNDVKIKAGQSFSFDVKEF 139
++ A NAA E I + + D+ KAG
Sbjct: 178 KYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQYVSKDMMAKAGDVTMIYCM-- 235
Query: 140 RELSYTKSPLRALG-----VRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTTKS 194
+ K + + + + G+
Sbjct: 236 -----------YGSNPMGYPN------YFKNGKDVNGNPEDRITRHNRTSGK-------- 270
Query: 195 ETVLDIPFCSRSDTGHYSLTLENNLGTA-TASAHVTGTE---FT-----DNNVHEGKAYE 245
L D G Y+ ++N +G S +T + V +G+
Sbjct: 271 --RLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVVSAPKYEQKPEKVIVVKQGQ--- 325
Query: 246 YRVSAV---NAAGTEKPKIS--LDALIGKRIKE-FVTSTTASLNIKNSVRKDSGIYKIEA 299
G P + + K + T T + L IK D G Y A
Sbjct: 326 ---DVTIPCKVTGLPAPNVVWSHN---AKPLSGGRATVTDSGLVIKGVKNGDKGYYGCRA 379
Query: 300 KNDYGIDMADIEVVV 314
N++G + V V
Sbjct: 380 TNEHGDKYFETLVQV 394
|
| >3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens} Length = 103 | Back alignment and structure |
|---|
Score = 68.9 bits (169), Expect = 1e-14
Identities = 22/100 (22%), Positives = 33/100 (33%), Gaps = 9/100 (9%)
Query: 353 APKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQ-- 410
AP+IT + R V G+ + +P W NG E+ +I + +
Sbjct: 8 APRITLRM--RSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNTSGVLT 65
Query: 411 -TIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDK 449
I DSG+Y N G S + V
Sbjct: 66 LEILD----CHTDDSGTYRAVCTNYKGEASDYATLDVTGG 101
|
| >1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642 | Back alignment and structure |
|---|
Score = 75.4 bits (185), Expect = 1e-14
Identities = 51/300 (17%), Positives = 90/300 (30%), Gaps = 64/300 (21%)
Query: 174 WSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVTGT-- 231
W +N Q + R +Q + L + +R+D G Y ++N L + +
Sbjct: 322 WWVNNQSLPVSPR--LQLSNDNRTLTLLSVTRNDVGPYECGIQNELSVDHSDPVILNVLY 379
Query: 232 -------EFTDNNVHEGKAYEYRVSAVNAAGTEKPKIS--LDALIGKRIKEFVTSTTASL 282
+ G A A + S +D G + T L
Sbjct: 380 GPDDPTISPSYTYYRPGVNLSLSCHA---ASNPPAQYSWLID---GNIQQH-----TQEL 428
Query: 283 NIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPP 342
I N K+SG+Y +A N + P
Sbjct: 429 FISNITEKNSGLYTCQANNSASGHSRTTVKTITVSAELPK-------------------- 468
Query: 343 VDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRI 402
P + V + T + +W VNG + R+
Sbjct: 469 ------PSISSNNSK--------PVEDKDAVAFTCEPEAQNTTY-LWWVNGQSLPVSPRL 513
Query: 403 KFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSD-SASCKVYVVDKPS-PPQGPLDVS 460
+ ++ N+T+ + R D+ +Y + N+V ++ S + V+ P P P D S
Sbjct: 514 QL-SNGNRTL-TLFNVTRN-DARAYVCGIQNSVSANRSDPVTLDVLYGPDTPIISPPDSS 570
|
| >1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642 | Back alignment and structure |
|---|
Score = 75.4 bits (185), Expect = 1e-14
Identities = 42/305 (13%), Positives = 86/305 (28%), Gaps = 77/305 (25%)
Query: 174 WSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVT---- 229
W +NG Q L IP + +++G Y+ N+ + T
Sbjct: 237 WFVNGTFQQSTQE-----------LFIPNITVNNSGSYTCQAHNSDTGLNRTTVTTITVY 285
Query: 230 -------GTEFTDNNVHEGKAYEYRVSAVNAAGTEKPKISL--DALIGKRIKEFVTSTTA 280
T N V + A + + + + +++
Sbjct: 286 AEPPKPFITSNNSNPVEDEDAVALTCEP---EIQNTTYLWWVNNQSLPVSPRLQLSNDNR 342
Query: 281 SLNIKNSVRKDSGIYKIEAKNDYGIDMAD-IEVVVVSKPGPPTGPIDYTTVTPESVSMSW 339
+L + + R D G Y+ +N+ +D +D + + V+ P PT
Sbjct: 343 TLTLLSVTRNDVGPYECGIQNELSVDHSDPVILNVLYGPDDPT----------------- 385
Query: 340 KPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPD 399
+S G +++ + P W ++G+
Sbjct: 386 --------------------ISPSYTYYRPGVNLSLSCHAASNPPAQYSWLIDGNIQQHT 425
Query: 400 GRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQGPLDV 459
+ S +SG YT Q N+ S + + P+ +
Sbjct: 426 QELFI------------SNITEKNSGLYTCQANNSASGHSRTTVKTITVSAELPKPSISS 473
Query: 460 SDITP 464
++ P
Sbjct: 474 NNSKP 478
|
| >1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642 | Back alignment and structure |
|---|
Score = 68.4 bits (167), Expect = 2e-12
Identities = 49/318 (15%), Positives = 84/318 (26%), Gaps = 68/318 (21%)
Query: 174 WSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVT---- 229
W +N Q + R +Q + L + +R+DT Y +N + S V
Sbjct: 144 WWVNNQSLPVSPR--LQLSNGNRTLTLFNVTRNDTASYKCETQNPVSARR-SDSVILNVL 200
Query: 230 ------GTEFTDNNVHEGKAYEYRVSAVNAAGTEKPKISLDALIGKRIKEFVTSTTASLN 283
+ + G+ +AA + S + +T L
Sbjct: 201 YGPDAPTISPLNTSYRSGENLNLSC---HAASNPPAQYSW------FVNGTFQQSTQELF 251
Query: 284 IKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPV 343
I N +SG Y +A N + PP +T +
Sbjct: 252 IPNITVNNSGSYTCQAHNSDTGLNRTTVTTITVYAEPPK-----PFITSNN--------- 297
Query: 344 DDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIK 403
V + +T + +W VN + R++
Sbjct: 298 --------------------SNPVEDEDAVALTCEPEIQNTTY-LWWVNNQSLPVSPRLQ 336
Query: 404 FETSENQ-TIYRNKSAKRATDSGSYTIQLVNTVGSD-SASCKVYVVDKPSPPQGPLDVSD 461
T+ D G Y + N + D S + V+ P P +
Sbjct: 337 LSNDNRTLTLLSV----TRNDVGPYECGIQNELSVDHSDPVILNVLYGPDDPTISPSYTY 392
Query: 462 ITPES-----CSLSWKPP 474
P C + PP
Sbjct: 393 YRPGVNLSLSCHAASNPP 410
|
| >1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642 | Back alignment and structure |
|---|
Score = 66.9 bits (163), Expect = 8e-12
Identities = 45/309 (14%), Positives = 84/309 (27%), Gaps = 67/309 (21%)
Query: 162 WVKLSEPFLNH---GWSINGQVCQIGGRAD-VQTTKSETVLDIPFCSRSDTGHYSLTLEN 217
W K N G+ I Q G + L I ++DTG Y+L +
Sbjct: 33 WYKGERVDGNRQIIGYVIGTQQATPGPAYSGREIIYPNASLLIQNIIQNDTGFYTLHVIK 92
Query: 218 NL-GTATASAHVTGTEFT---------DNNVHEGKAYEYRVSAVNAAGTEKPKISL--DA 265
+ A+ V + A + + + +
Sbjct: 93 SDLVNEEATGQFRVYPELPKPSISSNNSKPVEDKDAVAFTCEP---ETQDATYLWWVNNQ 149
Query: 266 LIGKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPI 325
+ + +++ +L + N R D+ YK E +N +D ++ V
Sbjct: 150 SLPVSPRLQLSNGNRTLTLFNVTRNDTASYKCETQNPVSARRSDSVILNVLYGPDA---- 205
Query: 326 DYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKP 385
P I+ + + +GE ++ + P
Sbjct: 206 ----------------------------PTIS----PLNTSYRSGENLNLSCHAASNPPA 233
Query: 386 TPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVY 445
W VNG + +SGSYT Q N+ + +
Sbjct: 234 QYSWFVNGTFQQSTQELFI------------PNITVNNSGSYTCQAHNSDTGLNRTTVTT 281
Query: 446 VVDKPSPPQ 454
+ PP+
Sbjct: 282 ITVYAEPPK 290
|
| >1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642 | Back alignment and structure |
|---|
Score = 65.4 bits (159), Expect = 2e-11
Identities = 35/289 (12%), Positives = 77/289 (26%), Gaps = 81/289 (28%)
Query: 174 WSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVT---- 229
W I+G + Q L I + ++G Y+ N+ + + T
Sbjct: 415 WLIDGNIQQHTQE-----------LFISNITEKNSGLYTCQANNSASGHSRTTVKTITVS 463
Query: 230 -------GTEFTDNNVHEGKAYEYRVSAVNAAGTEKPKISL----DALIGKRIKEFVTST 278
+ V + A + + + R++ +++
Sbjct: 464 AELPKPSISSNNSKPVEDKDAVAFTCEP---EAQNTTYLWWVNGQSLPVSPRLQ--LSNG 518
Query: 279 TASLNIKNSVRKDSGIYKIEAKNDYGIDMAD-IEVVVVSKPGPPTGPIDYTTVTPESVSM 337
+L + N R D+ Y +N + +D + + V+ P
Sbjct: 519 NRTLTLFNVTRNDARAYVCGIQNSVSANRSDPVTLDVLYGP------------------- 559
Query: 338 SWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVS 397
+P D + L+G ++ + P P W +NG
Sbjct: 560 ----------DTPIISPP--------DSSYLSGANLNLSCHSASNPSPQYSWRINGIPQQ 601
Query: 398 PDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYV 446
+ ++G+Y + N + S +
Sbjct: 602 HTQVLFIAKI------------TPNNNGTYACFVSNLATGRNNSIVKSI 638
|
| >1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642 | Back alignment and structure |
|---|
Score = 50.3 bits (120), Expect = 1e-06
Identities = 32/187 (17%), Positives = 55/187 (29%), Gaps = 42/187 (22%)
Query: 274 FVTSTTASLNIKNSVRKDSGIYKIEAKN-DYGIDMADIEVVVVSKPGPPTGPIDYTTVTP 332
+ ASL I+N ++ D+G Y + D + A + V + P+ +
Sbjct: 65 EIIYPNASLLIQNIIQNDTGFYTLHVIKSDLVNEEATGQFRVYPELPKPS------ISSN 118
Query: 333 ESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVN 392
S V + T + T +W VN
Sbjct: 119 NSK------------------------------PVEDKDAVAFTCEPETQD-ATYLWWVN 147
Query: 393 GDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSD-SASCKVYVVDKPS 451
+ R++ S + R D+ SY + N V + S S + V+ P
Sbjct: 148 NQSLPVSPRLQL--SNGNRTLTLFNVTR-NDTASYKCETQNPVSARRSDSVILNVLYGPD 204
Query: 452 PPQGPLD 458
P
Sbjct: 205 APTISPL 211
|
| >3tes_A Tencon; fibronectin type III domain, FN3, consensus design, de novo; 2.50A {Synthetic} Length = 98 | Back alignment and structure |
|---|
Score = 68.6 bits (168), Expect = 1e-14
Identities = 16/94 (17%), Positives = 31/94 (32%), Gaps = 5/94 (5%)
Query: 17 PTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGN-WEKAVVVPAGETSCTVP 75
P +L ++ +D + L WT P + ++++ ++ + VP E S +
Sbjct: 5 PKNLVVSEVTEDSLRLSWTAP----DAAFDSFMIQYQESEKVGEAINLTVPGSERSYDLT 60
Query: 76 GLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKP 109
GL G Y + V
Sbjct: 61 GLKPGTEYTVSIYGVKGGHRSNPLSAEFTTGGHH 94
|
| >1j8k_A Fibronectin; EDA, TYPEIII domain, protein binding; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 94 | Back alignment and structure |
|---|
Score = 68.2 bits (167), Expect = 2e-14
Identities = 20/88 (22%), Positives = 30/88 (34%), Gaps = 5/88 (5%)
Query: 17 PTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVE-MKDKTGNWEKAVVVPAGETSCTVP 75
P L TD D D + + W P ++ Y V + G E E + +
Sbjct: 5 PKGLAFTDVDVDSIKIAWESP----QGQVSRYRVTYSSPEDGIHELFPAPDGEEDTAELQ 60
Query: 76 GLIEGETYQFQVRAVNAAGPGEASKPTA 103
GL G Y V A++ + T
Sbjct: 61 GLRPGSEYTVSVVALHDDMESQPLIGTQ 88
|
| >2gee_A Hypothetical protein; fibronectin, EIIIB, cancer, neovascularization, cell adhesion, protein binding, oncoprotein; 2.01A {Homo sapiens} PDB: 2fnb_A Length = 203 | Back alignment and structure |
|---|
Score = 71.4 bits (175), Expect = 2e-14
Identities = 29/107 (27%), Positives = 38/107 (35%), Gaps = 5/107 (4%)
Query: 8 KNPFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDK-TGNWEKAVVVP 66
+ E +PTDL D + L+WTP S I GY + + G V
Sbjct: 17 RGSHMEVPQPTDLSFVDITDSSIGLRWTPL---NSSTIIGYRITVVAAGEGIPIFEDFVD 73
Query: 67 AGETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAP-IVAKPKNL 112
+ TV GL G Y V V G + T V P +L
Sbjct: 74 SSVGYYTVTGLEPGIDYDISVYTVKNGGESTPTTLTQQTAVPPPTDL 120
|
| >2gee_A Hypothetical protein; fibronectin, EIIIB, cancer, neovascularization, cell adhesion, protein binding, oncoprotein; 2.01A {Homo sapiens} PDB: 2fnb_A Length = 203 | Back alignment and structure |
|---|
Score = 69.1 bits (169), Expect = 1e-13
Identities = 16/88 (18%), Positives = 29/88 (32%), Gaps = 4/88 (4%)
Query: 13 EPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTG-NWEKAVVVPAGETS 71
PTDL T+ D + + W PP +T ++V + + + +
Sbjct: 113 AVPPPTDLRFTNIGPDTMRVTWAPP---PSIDLTNFLVRYSPVKNEEDVAELSISPSDNA 169
Query: 72 CTVPGLIEGETYQFQVRAVNAAGPGEAS 99
+ L+ G Y V +V
Sbjct: 170 VVLTNLLPGTEYVVSVSSVYEQHESTPL 197
|
| >2gee_A Hypothetical protein; fibronectin, EIIIB, cancer, neovascularization, cell adhesion, protein binding, oncoprotein; 2.01A {Homo sapiens} PDB: 2fnb_A Length = 203 | Back alignment and structure |
|---|
Score = 41.0 bits (96), Expect = 3e-04
Identities = 14/65 (21%), Positives = 19/65 (29%), Gaps = 5/65 (7%)
Query: 433 NTVGSDSASCKVYVVDKPSPPQGP--LDVSDITPESCSLSWKPPLDDGGSPITNYVVEKY 490
++ S + P L DIT S L W P S I Y +
Sbjct: 3 SSHHHHHHSSGLVPRGSHMEVPQPTDLSFVDITDSSIGLRWTPL---NSSTIIGYRITVV 59
Query: 491 ESATG 495
+ G
Sbjct: 60 AAGEG 64
|
| >3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339 | Back alignment and structure |
|---|
Score = 73.6 bits (180), Expect = 2e-14
Identities = 39/302 (12%), Positives = 70/302 (23%), Gaps = 60/302 (19%)
Query: 174 WSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVT---- 229
W N + G + + + L + + D+G Y T N S +
Sbjct: 59 WHKNDSARTVPGEEETRMWAQDGALWLLPALQEDSGTYVCTTRNASYCDKMSIELRVFEN 118
Query: 230 ---GTEFTDNNVH----EGKAYEYRVSAVNAAGTEKPKISL----DALIGKRIKEFVTST 278
F + KI L K
Sbjct: 119 TDAFLPFISYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNEKFLSVRG 178
Query: 279 TASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMS 338
T L + + +D+G Y+ + +I + +
Sbjct: 179 TTHLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKKKEET------------- 225
Query: 339 WKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTIT---VPFSGRPKPTPIWTVNG-- 393
P I S L ++ G TI +G P T +W
Sbjct: 226 --------------IPVIISPLK--TISASLGSRLTIPCKVFLGTGTPLTTMLWWTANDT 269
Query: 394 --DEVSPDGRIKFETSENQTIYRNKSAK--------RATDSGS-YTIQLVNTVGSDSASC 442
+ P GR+ + + + D + + NT+ +
Sbjct: 270 HIESAYPGGRVTEGPRQEYSENNENYIEVPLIFDPVTREDLHMDFKCVVHNTLSFQTLRT 329
Query: 443 KV 444
V
Sbjct: 330 TV 331
|
| >3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339 | Back alignment and structure |
|---|
Score = 62.8 bits (152), Expect = 7e-11
Identities = 30/264 (11%), Positives = 64/264 (24%), Gaps = 59/264 (22%)
Query: 212 SLTLENNLGTATA-SAHVTGTEFTDNNVHEGKAY----EYRVSAVNAAGTEKPKIS---- 262
TL+ T A S G + EG+ + A+ + + ++
Sbjct: 3 PFTLQPAAHTGAARSCRFRGRHYKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKN 62
Query: 263 -LDALIGKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPP 321
+ + + + +L + ++++DSG Y +N D IE+ V
Sbjct: 63 DSARTVPGEEETRMWAQDGALWLLPALQEDSGTYVCTTRNASYCDKMSIELRVFENTDAF 122
Query: 322 TGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVP--- 378
I Y + + P
Sbjct: 123 LPFISYPQ------------------------------------ILTLSTSGVLVCPDLS 146
Query: 379 --FSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVG 436
+ W + + D + + A D+G Y L
Sbjct: 147 EFTRDKTDVKIQWYKDSLLLDKDNEKFLSVRGTTHLLVHDVAL--EDAGYYRCVLTFAHE 204
Query: 437 SDSASC------KVYVVDKPSPPQ 454
+ ++ + + P
Sbjct: 205 GQQYNITRSIELRIKKKKEETIPV 228
|
| >2ede_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 114 | Back alignment and structure |
|---|
Score = 68.6 bits (168), Expect = 2e-14
Identities = 21/93 (22%), Positives = 35/93 (37%), Gaps = 6/93 (6%)
Query: 14 PGKPTDLEATDWDKDH--VDLQWTPPISDGGSPITGYVVE---MKDKTGNWEKAVVVPAG 68
P DL + V + W PP+ G IT Y++ K+ + +
Sbjct: 9 TSAPKDLTVITREGKPRAVIVSWQPPLEANG-KITAYILFYTLDKNIPIDDWIMETISGD 67
Query: 69 ETSCTVPGLIEGETYQFQVRAVNAAGPGEASKP 101
+ + L Y F+++A N+ G G S P
Sbjct: 68 RLTHQIMDLNLDTMYYFRIQARNSKGVGPLSDP 100
|
| >3l5i_A Interleukin-6 receptor subunit beta; cytokine receptor, fibronectin type III domain, alternative cell membrane, disulfide bond; 1.90A {Homo sapiens} PDB: 3l5j_A Length = 290 | Back alignment and structure |
|---|
Score = 72.5 bits (178), Expect = 2e-14
Identities = 19/93 (20%), Positives = 31/93 (33%), Gaps = 2/93 (2%)
Query: 12 DEPGKPTDLEATDWDKDHVDLQWTP-PISDGGSPITGYVVEMKDKTGNWEKAVVVPAGET 70
P K + K+ L+W P+ I Y + + GN V V + T
Sbjct: 195 APPSKGPTVRTKKVGKNEAVLEWDQLPVDVQNGFIRNYTIFYRTIIGNETA-VNVDSSHT 253
Query: 71 SCTVPGLIEGETYQFQVRAVNAAGPGEASKPTA 103
T+ L Y ++ A G + + T
Sbjct: 254 EYTLSSLTSDTLYMVRMAAYTDEGGKDGPEFTF 286
|
| >3l5i_A Interleukin-6 receptor subunit beta; cytokine receptor, fibronectin type III domain, alternative cell membrane, disulfide bond; 1.90A {Homo sapiens} PDB: 3l5j_A Length = 290 | Back alignment and structure |
|---|
Score = 59.4 bits (144), Expect = 6e-10
Identities = 17/100 (17%), Positives = 27/100 (27%)
Query: 4 SVLIKNPFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAV 63
+ I + P + + ++WT P I + V +
Sbjct: 91 VLTIPACDFQATHPVMDLKAFPKDNMLWVEWTTPRESVKKYILEWCVLSDKAPCITDWQQ 150
Query: 64 VVPAGETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTA 103
+ L E + Y V V A GPG A
Sbjct: 151 EDGTVHRTYLRGNLAESKCYLITVTPVYADGPGSPESIKA 190
|
| >3l5i_A Interleukin-6 receptor subunit beta; cytokine receptor, fibronectin type III domain, alternative cell membrane, disulfide bond; 1.90A {Homo sapiens} PDB: 3l5j_A Length = 290 | Back alignment and structure |
|---|
Score = 55.2 bits (133), Expect = 1e-08
Identities = 17/95 (17%), Positives = 28/95 (29%), Gaps = 6/95 (6%)
Query: 30 VDLQWTP-PISDGGSPITGYVVEMKDKTGNWEKAVVVPAGETSCTVPGLIEGETYQFQVR 88
V L W P + I Y V + + + T TV + + Y +
Sbjct: 25 VQLVWKTLPPFEANGKILDYEVTLTRWKSHLQN---YTVNATKLTV--NLTNDRYLATLT 79
Query: 89 AVNAAGPGEASKPTAPIVAKPKNLAPRIDRSTLND 123
N G +A+ T P ++ D
Sbjct: 80 VRNLVGKSDAAVLTIPACDFQATHPVMDLKAFPKD 114
|
| >3l5i_A Interleukin-6 receptor subunit beta; cytokine receptor, fibronectin type III domain, alternative cell membrane, disulfide bond; 1.90A {Homo sapiens} PDB: 3l5j_A Length = 290 | Back alignment and structure |
|---|
Score = 44.0 bits (104), Expect = 6e-05
Identities = 32/228 (14%), Positives = 59/228 (25%), Gaps = 53/228 (23%)
Query: 275 VTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPID--YTTVTP 332
V +T ++N+ N + + +N G + + + T P+
Sbjct: 60 VNATKLTVNLTNDRY----LATLTVRNLVG-KSDAAVLTIPACDFQATHPVMDLKAFPKD 114
Query: 333 ESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVN 392
+ + W P + I W V
Sbjct: 115 NMLWVEWTTPRESVKKYILE------------------------------------WCVL 138
Query: 393 GDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQL--VNTVGSDSASCKVYVVDKP 450
D+ + E Y + + Y I + V G + + K
Sbjct: 139 SDKAPCITDWQQEDGTVHRTYLRGNLAESK---CYLITVTPVYADG-PGSPESIKAYLKQ 194
Query: 451 SPPQGP--LDVSDITPESCSLSWKP-PLDDGGSPITNYVVEKYESATG 495
+PP + + L W P+D I NY + Y + G
Sbjct: 195 APPSKGPTVRTKKVGKNEAVLEWDQLPVDVQNGFIRNYTIF-YRTIIG 241
|
| >3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} Length = 108 | Back alignment and structure |
|---|
Score = 68.1 bits (167), Expect = 2e-14
Identities = 25/102 (24%), Positives = 37/102 (36%), Gaps = 7/102 (6%)
Query: 353 APKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQ-T 411
AP IT +L + T GE ++ SG P P +W + + + D I + T
Sbjct: 10 APTITGNL--ENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRNLT 67
Query: 412 IYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPP 453
I R R D G YT Q + +G +
Sbjct: 68 IRR----VRKEDEGLYTCQACSVLGCAKVEAFFIIEGAQEKT 105
|
| >2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110 | Back alignment and structure |
|---|
Score = 67.8 bits (166), Expect = 3e-14
Identities = 29/111 (26%), Positives = 46/111 (41%), Gaps = 7/111 (6%)
Query: 346 GGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGR---I 402
G + +GAP L + + G T T +G PKP W +G ++SP I
Sbjct: 1 GSSGSSGAPFFEMKL--KHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTI 58
Query: 403 KFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPP 453
+ + +++ S D G+YTI N G S + ++ V S P
Sbjct: 59 QRDLDGTCSLHTTAS--TLDDDGNYTIMAANPQGRISCTGRLMVQAVNSGP 107
|
| >2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110 | Back alignment and structure |
|---|
Score = 39.3 bits (92), Expect = 3e-04
Identities = 19/77 (24%), Positives = 26/77 (33%), Gaps = 7/77 (9%)
Query: 253 AAGTEKPKIS-------LDALIGKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGI 305
AG KPKI + + T SL+ S D G Y I A N G
Sbjct: 32 VAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSLHTTASTLDDDGNYTIMAANPQGR 91
Query: 306 DMADIEVVVVSKPGPPT 322
++V + P+
Sbjct: 92 ISCTGRLMVQAVNSGPS 108
|
| >1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A Length = 106 | Back alignment and structure |
|---|
Score = 67.8 bits (166), Expect = 3e-14
Identities = 26/99 (26%), Positives = 46/99 (46%), Gaps = 3/99 (3%)
Query: 348 TPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETS 407
+ T A +I + R MTV GE + G P PT W G +S R + T+
Sbjct: 9 SKTTLAARILTKP--RSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTT 66
Query: 408 ENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYV 446
+ ++ + S +A+D G+Y++ + N+ G A + +
Sbjct: 67 KYKSTFEISSV-QASDEGNYSVVVENSEGKQEAEFTLTI 104
|
| >1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A Length = 106 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 2e-06
Identities = 20/56 (35%), Positives = 28/56 (50%)
Query: 174 WSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVT 229
W GQV R V TTK ++ +I SD G+YS+ +EN+ G A +T
Sbjct: 48 WLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSVVVENSEGKQEAEFTLT 103
|
| >3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527 | Back alignment and structure |
|---|
Score = 74.0 bits (181), Expect = 4e-14
Identities = 35/295 (11%), Positives = 64/295 (21%), Gaps = 67/295 (22%)
Query: 174 WSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVTG--- 230
W + G + + + + + N LG
Sbjct: 173 WVLCDSQ----GESCKEESPAVVKKEEKVLHELFGTDIRCCARNELGRECTRLFTIDLNQ 228
Query: 231 ---TEFTDNNVHEGKAYEYRVSAVNAAGTEKPKI-----------SLDALIGKRIKEFVT 276
T + G+ R AV+ + +
Sbjct: 229 TPQTTLPQLFLKVGEPLWIRCKAVH--VNHGFGLTWELENKALEEGNYFEMSTYSTNRTM 286
Query: 277 STTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVS 336
+ + R D+G Y + V +V K + T S
Sbjct: 287 IRILFAFVSSVARNDTGYYTCSSSKHPS---QSALVTIVEKG--------FINATNSS-- 333
Query: 337 MSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEV 396
D + EEF +V F P+ WT +
Sbjct: 334 --------------------------EDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSF 367
Query: 397 SPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPS 451
P + + + + + N G Y N + + + KP
Sbjct: 368 -PCEQKGLDNGYSISKFCNH----KHQPGEYIFHAENDDAQFTKMFTLNIRRKPQ 417
|
| >3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527 | Back alignment and structure |
|---|
Score = 66.6 bits (162), Expect = 6e-12
Identities = 30/316 (9%), Positives = 76/316 (24%), Gaps = 76/316 (24%)
Query: 174 WSINGQV------CQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTAT---- 223
W + + ++ + +T + +R+DTG+Y+ + + +
Sbjct: 262 WELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPSQSALVTI 321
Query: 224 -ASAHVTGTEFTDN-NVHEGKAYEYRVSAVNAAGTEKPKIS---LDALIGKRIKEFVTST 278
+ T +++ + + + + + V + + + K
Sbjct: 322 VEKGFINATNSSEDYEIDQYEEFCFSVRF---KAYPQIRCTWTFSRKSFPCEQKGLDNGY 378
Query: 279 TASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMS 338
S++ + + G Y A+ND + + K
Sbjct: 379 --SISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRRK--------------------- 415
Query: 339 WKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSP 398
P++ + + G P P+ W D+
Sbjct: 416 ---------------PQV----------LAEASASQASCFSDGYPLPSWTWKKCSDKSPN 450
Query: 399 DGRIKFETSENQTIYRNKSAK----------RATDSGSYTIQLVNTVGSDSASCKVYVVD 448
E N+ R + A N++G+ + +
Sbjct: 451 CTEEITEGVWNRKANRKVFGQWVSSSTLNMSEAIKGFLVKCCAYNSLGTSCETILLNSPG 510
Query: 449 KPSPPQGPLDVSDITP 464
Q
Sbjct: 511 PFPFIQDGGTKHHHHH 526
|
| >3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527 | Back alignment and structure |
|---|
Score = 60.5 bits (146), Expect = 7e-10
Identities = 36/294 (12%), Positives = 74/294 (25%), Gaps = 55/294 (18%)
Query: 168 PFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAH 227
++ W D+Q + + I + + G Y L +++ T
Sbjct: 76 GNISCLWVFKHSSLNCQPHFDLQNRGVVS-MVILKMTETQAGEYLLFIQSEATNYTILFT 134
Query: 228 VTGTE---FTDNNVHEGKAYEYRVSAVNAAGTEKPKIS--LDALIGKRIKEFVTSTTASL 282
V+ +T + K + +P + L G+ KE +
Sbjct: 135 VSIRNTLLYTLRRPYFRKMENQDALVCISESVPEPIVEWVLCDSQGESCKEESPAVV-KK 193
Query: 283 NIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPP 342
K + A+N+ G + + + +++
Sbjct: 194 EEKVLHELFGTDIRCCARNELGRECTRLFTIDLNQT------------------------ 229
Query: 343 VDDGGTPITGAPKITSDLSIRDMTVLAGEEFTIT-VPFSGRPKPTPIWTVNGDEVSPDGR 401
P+ T + + + GE I W + +
Sbjct: 230 -----------PQTT----LPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNY 274
Query: 402 IKFETSENQTIYRNK-----SAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKP 450
+ T S+ D+G YT S V +V+K
Sbjct: 275 FEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPSQ---SALVTIVEKG 325
|
| >3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527 | Back alignment and structure |
|---|
Score = 59.7 bits (144), Expect = 1e-09
Identities = 9/104 (8%), Positives = 28/104 (26%), Gaps = 4/104 (3%)
Query: 353 APKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTI 412
+ + + V T+ V + +W ++ + ++
Sbjct: 48 SSGTVYEA--AAVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQNRGVVSM 105
Query: 413 YRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQGP 456
K T +G Y + + + + + V + +
Sbjct: 106 VILKM--TETQAGEYLLFIQSEATNYTILFTVSIRNTLLYTLRR 147
|
| >3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527 | Back alignment and structure |
|---|
Score = 52.8 bits (126), Expect = 2e-07
Identities = 22/264 (8%), Positives = 55/264 (20%), Gaps = 55/264 (20%)
Query: 204 SRSDTGHYSLTLENNLGTATA---SAHVTGTEFTDNNVHEGKAYEYRVSAVNAAGTEKPK 260
S + Y + E+ A + T E V + +V
Sbjct: 23 SVGKSSSYPMVSESPEDLGCALRPQSSGTVYEAAAVEVDVSASITLQVLV---DAPGNIS 79
Query: 261 IS----LDALIGKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVS 316
+L + + S+ I +G Y + +++ V + +
Sbjct: 80 CLWVFKHSSLNCQPHFDLQNRGVVSMVILKMTETQAGEYLLFIQSEATNYTILFTVSIRN 139
Query: 317 KPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTIT 376
T+ + +
Sbjct: 140 TL--------LYTLRRPYF-------------------------------RKMENQDALV 160
Query: 377 VPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVG 436
P+P W + + + + ++ N +G
Sbjct: 161 CISESVPEPIVEWVLCDSQGESCKEESPAVVKKEEKVLHEL-----FGTDIRCCARNELG 215
Query: 437 SD-SASCKVYVVDKPSPPQGPLDV 459
+ + + + P L +
Sbjct: 216 RECTRLFTIDLNQTPQTTLPQLFL 239
|
| >3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527 | Back alignment and structure |
|---|
Score = 44.7 bits (105), Expect = 5e-05
Identities = 17/171 (9%), Positives = 39/171 (22%), Gaps = 32/171 (18%)
Query: 168 PFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAH 227
P + W+ + + + + + + G Y EN+ T
Sbjct: 354 PQIRCTWTFSRKSFPCEQK----GLDNGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFT 409
Query: 228 VTGTEFTDNNVHEG-KAYEYRVSAV---NAAGTEKPKIS----------------LDALI 267
+ + + ++ + G P +
Sbjct: 410 LN--------IRRKPQVLAEASASQASCFSDGYPLPSWTWKKCSDKSPNCTEEITEGVWN 461
Query: 268 GKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKP 318
K ++ +S + S + K A N G I +
Sbjct: 462 RKANRKVFGQWVSSSTLNMSEAIKGFLVKCCAYNSLGTSCETILLNSPGPF 512
|
| >1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 118 | Back alignment and structure |
|---|
Score = 67.9 bits (166), Expect = 4e-14
Identities = 24/117 (20%), Positives = 41/117 (35%), Gaps = 15/117 (12%)
Query: 353 APKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTI 412
P++ S E I G P PT W NG + I E + I
Sbjct: 8 PPRVVSLEE-----PELRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEI 62
Query: 413 YRN----KSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSP-----PQGPLDVS 460
++G+YT+ N +G+ + + + + +P P P P+ V+
Sbjct: 63 SEGCLLFNKPTHY-NNGNYTLIAKNPLGTANQTINGHFLKEPFPVDEVSPTPPITVT 118
|
| >1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 118 | Back alignment and structure |
|---|
Score = 53.3 bits (128), Expect = 6e-09
Identities = 15/64 (23%), Positives = 22/64 (34%), Gaps = 5/64 (7%)
Query: 270 RIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGP-----PTGP 324
+ + L ++G Y + AKN G I + +P P PT P
Sbjct: 55 EYYQEGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHFLKEPFPVDEVSPTPP 114
Query: 325 IDYT 328
I T
Sbjct: 115 ITVT 118
|
| >1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 118 | Back alignment and structure |
|---|
Score = 39.8 bits (93), Expect = 2e-04
Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 4/60 (6%)
Query: 174 WSINGQVCQIGGRADVQTTKSETV----LDIPFCSRSDTGHYSLTLENNLGTATASAHVT 229
W NGQ + V+ + + L + + G+Y+L +N LGTA + +
Sbjct: 39 WLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGH 98
|
| >3qht_C Monobody YSMB-1; fibronectin type III, yeast small ubiquitin-like modifier, S NOVO protein; 2.40A {Artificial gene} Length = 97 | Back alignment and structure |
|---|
Score = 67.0 bits (164), Expect = 5e-14
Identities = 20/96 (20%), Positives = 33/96 (34%), Gaps = 5/96 (5%)
Query: 14 PGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGN-WEKAVVVPAGETSC 72
PT LE + + W S ++ Y + + GN + VP ++
Sbjct: 5 SSVPTKLEVVAATPTSLLISWDAS----SSSVSYYRITYGETGGNSPVQEFTVPGSSSTA 60
Query: 73 TVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAK 108
T+ GL G Y V A + S + I +
Sbjct: 61 TISGLSPGVDYTITVYAYYSYYDLYYSYSPSSINYR 96
|
| >1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291 | Back alignment and structure |
|---|
Score = 71.8 bits (176), Expect = 5e-14
Identities = 51/278 (18%), Positives = 84/278 (30%), Gaps = 58/278 (20%)
Query: 189 VQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTA-TASAHVT-------GTEFTDNNVHE 240
V + L I + D G Y + GT A+ +V T E
Sbjct: 55 VWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKE 114
Query: 241 GKAYEYRVSAVNAAGTEKPKIS----LDALIGKRIKEFVTSTTASLNIKNSVRKDSGIYK 296
G+ + P I +I K+ F+ + L I+ + D G Y+
Sbjct: 115 GEDAVIVCDV---VSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYR 171
Query: 297 IEAKNDYG--IDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAP 354
E + I+ DI+V+V P
Sbjct: 172 CEGRILARGEINFKDIQVIVNV------------------------------------PP 195
Query: 355 KITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIK---FETSENQT 411
+ + SI + T G+ T+ G P+PT WT +G+ + + + ++
Sbjct: 196 TVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSE 255
Query: 412 IYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDK 449
+ K D Y N G AS + V K
Sbjct: 256 LTIRNVDK--NDEAEYVCIAENKAGEQDASIHLKVFAK 291
|
| >1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291 | Back alignment and structure |
|---|
Score = 59.9 bits (145), Expect = 4e-10
Identities = 41/240 (17%), Positives = 69/240 (28%), Gaps = 55/240 (22%)
Query: 279 TASLNIKNSVRKDSGIYKIEAKNDYG-IDMADIEVVVVSKPGPPTGPIDYTTVTPESVSM 337
+++L I N+ D+GIYK + G A + V + K P
Sbjct: 61 SSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKL--------MFKNAPT---- 108
Query: 338 SWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVS 397
GE+ I PT IW G +V
Sbjct: 109 --------------------------PQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVI 142
Query: 398 PDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSP----P 453
++F N + + + K+ TD G+Y + + + V+ P
Sbjct: 143 LKKDVRFIVLSNNYL-QIRGIKK-TDEGTYRCEGRILARGEINFKDIQVIVNVPPTVQAR 200
Query: 454 QGPLDVSDITPES----CSLSWKPP------LDDGGSPITNYVVEKYESATGVSDLFISK 503
Q ++ + +S C P D EK+ + S+L I
Sbjct: 201 QSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRN 260
|
| >1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291 | Back alignment and structure |
|---|
Score = 52.6 bits (126), Expect = 9e-08
Identities = 26/165 (15%), Positives = 48/165 (29%), Gaps = 28/165 (16%)
Query: 174 WSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVT---- 229
W G+ + + L I ++D G Y +
Sbjct: 134 WKHKGRDVILKKDVRFIVLSNNY-LQIRGIKKTDEGTYRCEGRILARGEINFKDIQVIVN 192
Query: 230 -------GTEFTDNNVHEGKAYEYRVSAV---NAAGTEKPKIS-------LDALIGKRIK 272
+ + G+ S +A G +P +S ++ K
Sbjct: 193 VPPTVQARQSIVNATANLGQ------SVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEK 246
Query: 273 EFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSK 317
+ ++ L I+N + D Y A+N G A I + V +K
Sbjct: 247 HIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKVFAK 291
|
| >2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192 | Back alignment and structure |
|---|
Score = 69.8 bits (171), Expect = 5e-14
Identities = 35/196 (17%), Positives = 59/196 (30%), Gaps = 51/196 (26%)
Query: 253 AAGTEKPKIS--LDALIGKRIKEF-----VTSTTASLNIKNSVRKDSGIYKIEAKNDYGI 305
+P+IS + IK F + L I + D GIY A N G
Sbjct: 31 VESYPQPEISWTRN---KILIKLFDTRYSIRENGQLLTILSVEDSDDGIYCCTANNGVGG 87
Query: 306 DMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDM 365
+ + V PKIT ++
Sbjct: 88 AVESCGALQVKMK-----------------------------------PKITRPPI--NV 110
Query: 366 TVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSG 425
++ G + + G PKP+ W + + RI S + I+ + D+G
Sbjct: 111 KIIEGLKAVLPCTTMGNPKPSVSWIKGDSALRENSRIAVLESGSLRIHN----VQKEDAG 166
Query: 426 SYTIQLVNTVGSDSAS 441
Y N++G+ +
Sbjct: 167 QYRCVAKNSLGTAYSK 182
|
| >2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 3e-06
Identities = 26/109 (23%), Positives = 40/109 (36%), Gaps = 5/109 (4%)
Query: 353 APKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTI 412
AP IT+ + + L E T P+P WT N + ++ EN +
Sbjct: 7 APVITT--PLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDT-RYSIRENGQL 63
Query: 413 YRNKSAKRATDSGSYTIQLVNTVGSD-SASCKVYVVDKPSPPQGPLDVS 460
S +D G Y N VG + + V KP + P++V
Sbjct: 64 LTILSV-EDSDDGIYCCTANNGVGGAVESCGALQVKMKPKITRPPINVK 111
|
| >1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4 Length = 99 | Back alignment and structure |
|---|
Score = 66.5 bits (163), Expect = 7e-14
Identities = 27/105 (25%), Positives = 40/105 (38%), Gaps = 10/105 (9%)
Query: 349 PITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSE 408
P APKI + + TV G + V G+P P W NG ++ RI + E
Sbjct: 1 PSMEAPKIFERI--QSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPE 58
Query: 409 NQ----TIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDK 449
+ I DS S ++ +N G S+ + V K
Sbjct: 59 DNVCELVIRD----VTGEDSASIMVKAINIAGETSSHAFLLVQAK 99
|
| >1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A Length = 154 | Back alignment and structure |
|---|
Score = 67.6 bits (165), Expect = 1e-13
Identities = 23/139 (16%), Positives = 43/139 (30%), Gaps = 2/139 (1%)
Query: 327 YTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPT 386
+ + V + P T + DM V+ G G P P
Sbjct: 15 TSPINANKVENEDAFLEEVAEEKPHVKPYFTKTI--LDMEVVEGSAARFDCKVEGYPDPE 72
Query: 387 PIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYV 446
+W + + V + + E S D YT + VN++G + + ++ V
Sbjct: 73 VMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCTAELLV 132
Query: 447 VDKPSPPQGPLDVSDITPE 465
+G + + E
Sbjct: 133 ETMGKEGEGEGEGEEDEEE 151
|
| >1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A Length = 154 | Back alignment and structure |
|---|
Score = 39.8 bits (93), Expect = 4e-04
Identities = 12/55 (21%), Positives = 17/55 (30%)
Query: 279 TASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPE 333
SL I D Y +A N G E++V + G + E
Sbjct: 97 NCSLTISEVCGDDDAKYTCKAVNSLGEATCTAELLVETMGKEGEGEGEGEEDEEE 151
|
| >3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289 | Back alignment and structure |
|---|
Score = 70.4 bits (172), Expect = 1e-13
Identities = 40/294 (13%), Positives = 76/294 (25%), Gaps = 61/294 (20%)
Query: 174 WSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVT---- 229
W + + L + +TG Y T + + + H+
Sbjct: 34 WDGPISP-----YWTLDPESPGSTLTTRNATFKNTGTYRCTELEDPMAGSTTIHLYVKDP 88
Query: 230 ----GTEFTDNNVHEGKAYEY--RVSAVNAAGTEKPKISL---DALIGKRIKEFVTSTTA 280
+ V EG+ ++ K +SL R + S
Sbjct: 89 AHSWNLLAQEVTVVEGQEAVLPCLITDPAL----KDSVSLMREGGRQVLRKTVYFFSPWR 144
Query: 281 SLNIKNSVRKDSGIYKIEAKND-YGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSW 339
I+ + DS Y + + I + V P
Sbjct: 145 GFIIRKAKVLDSNTYVCKTMVNGRESTSTGIWLKVNRVHPEP------------------ 186
Query: 340 KPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGD---EV 396
P+I + S + + GE I + + GD E+
Sbjct: 187 --------------PQIKLEPS--KLVRIRGEAAQIVCSATNAEVGFNVILKRGDTKLEI 230
Query: 397 SPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKP 450
+ + + + D+G Y+ N VG+ +A+ VV+
Sbjct: 231 PLNSDFQDNYYKKVRALSLNAV-DFQDAGIYSCVASNDVGTRTATMNFQVVESH 283
|
| >3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289 | Back alignment and structure |
|---|
Score = 47.6 bits (113), Expect = 5e-06
Identities = 28/189 (14%), Positives = 50/189 (26%), Gaps = 42/189 (22%)
Query: 267 IGKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPID 326
I S ++L +N+ K++G Y+ D I + V
Sbjct: 38 ISPYWTLDPESPGSTLTTRNATFKNTGTYRCTELEDPMAGSTTIHLYVKDPA-------- 89
Query: 327 YTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTIT-VPFSGRPKP 385
+++TV+ G+E + + K
Sbjct: 90 ---------HSWNLLA--------------------QEVTVVEGQEAVLPCLITDPALKD 120
Query: 386 TPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYT-IQLVNTVGSDSASCKV 444
+ G + F + I R + DS +Y +VN S S +
Sbjct: 121 SVSLMREGGRQVLRKTVYFFSPWRGFIIRK---AKVLDSNTYVCKTMVNGRESTSTGIWL 177
Query: 445 YVVDKPSPP 453
V P
Sbjct: 178 KVNRVHPEP 186
|
| >1x5a_A Ephrin type-A receptor 1; tyrosine-protein kinase receptor, ESK, fibronectin type III (FN3) domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.1.2.1 Length = 107 | Back alignment and structure |
|---|
Score = 66.0 bits (161), Expect = 1e-13
Identities = 17/89 (19%), Positives = 30/89 (33%), Gaps = 4/89 (4%)
Query: 13 EPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVVVPAGETSC 72
E L+ + ++L W Y + + ++ W + V+ E
Sbjct: 9 ESLSGLSLKLVKKEPRQLELTWAGSRPRNPGGNLSYELHVLNQDEEWHQMVL----EPRV 64
Query: 73 TVPGLIEGETYQFQVRAVNAAGPGEASKP 101
+ L TY +VR + GPG S
Sbjct: 65 LLTKLQPDTTYIVRVRTLTPLGPGPFSPD 93
|
| >1tdq_A Tenascin-R; extracellular matrix, lecticans, tenascins, protein-protein interactions, C-type lectin domain; 2.60A {Rattus norvegicus} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 Length = 283 | Back alignment and structure |
|---|
Score = 70.2 bits (172), Expect = 1e-13
Identities = 24/91 (26%), Positives = 31/91 (34%), Gaps = 5/91 (5%)
Query: 13 EPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVVVPAGETSC 72
E P DL T + + L WT PI Y + +G + V VP TS
Sbjct: 196 ELDSPRDLMVTASSETSISLIWTKA----SGPIDHYRITFTPSSGISSE-VTVPRDRTSY 250
Query: 73 TVPGLIEGETYQFQVRAVNAAGPGEASKPTA 103
T+ L G Y + A S A
Sbjct: 251 TLTDLEPGAEYIISITAERGRQQSLESTVDA 281
|
| >1tdq_A Tenascin-R; extracellular matrix, lecticans, tenascins, protein-protein interactions, C-type lectin domain; 2.60A {Rattus norvegicus} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 Length = 283 | Back alignment and structure |
|---|
Score = 69.5 bits (170), Expect = 2e-13
Identities = 20/101 (19%), Positives = 35/101 (34%), Gaps = 6/101 (5%)
Query: 14 PGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGN-WEKAVVVPAGETSC 72
PT + D ++WTPP + + +++ G + + +
Sbjct: 15 IDGPTQILVRDVSDTVAFVEWTPP----RAKVDFILLKYGLVGGEGGKTTFRLQPPLSQY 70
Query: 73 TVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIV-AKPKNL 112
+V L G Y+ + AV +AS PKNL
Sbjct: 71 SVQALRPGSRYEVSISAVRGTNESDASSTQFTTEIDAPKNL 111
|
| >1tdq_A Tenascin-R; extracellular matrix, lecticans, tenascins, protein-protein interactions, C-type lectin domain; 2.60A {Rattus norvegicus} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 Length = 283 | Back alignment and structure |
|---|
Score = 60.6 bits (147), Expect = 2e-10
Identities = 22/103 (21%), Positives = 34/103 (33%), Gaps = 8/103 (7%)
Query: 14 PGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVVVPAG---ET 70
P +L +DL+W + Y V G V+VP G T
Sbjct: 105 IDAPKNLRVGSRTATSLDLEWDNS----EAEAQEYKVVYSTLAGEQYHEVLVPKGIGPTT 160
Query: 71 SCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIV-AKPKNL 112
T+ L+ G Y + AV + + A P++L
Sbjct: 161 KTTLTDLVPGTEYGVGISAVMNSKQSIPATMNARTELDSPRDL 203
|
| >1tdq_A Tenascin-R; extracellular matrix, lecticans, tenascins, protein-protein interactions, C-type lectin domain; 2.60A {Rattus norvegicus} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 Length = 283 | Back alignment and structure |
|---|
Score = 40.6 bits (95), Expect = 7e-04
Identities = 26/234 (11%), Positives = 58/234 (24%), Gaps = 62/234 (26%)
Query: 318 PGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTV---------- 367
PT I V+ + W PP + + + +
Sbjct: 15 IDGPTQ-ILVRDVSDTVAFVEWTPPRAKVDFILLKYGLVGGEGGKTTFRLQPPLSQYSVQ 73
Query: 368 --LAGEEFTITV------------PFSGRPKPTP-----IWTVNGDEVS-----PDGRIK 403
G + +++ + + + + + +
Sbjct: 74 ALRPGSRYEVSISAVRGTNESDASSTQFTTEIDAPKNLRVGSRTATSLDLEWDNSEAEAQ 133
Query: 404 F-----------ETSENQTIYRNKSAKRATDSG-----SYTIQLV---NTVGSDSASCKV 444
+ E + T + Y + + N+ S A+
Sbjct: 134 EYKVVYSTLAGEQYHEVLVPKGIGPTTKTTLTDLVPGTEYGVGISAVMNSKQSIPATMNA 193
Query: 445 YVVDKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATGVSD 498
P+ L V+ + S SL W PI +Y + + ++G+S
Sbjct: 194 RTE--LDSPRD-LMVTASSETSISLIWTKAS----GPIDHYRIT-FTPSSGISS 239
|
| >2edd_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 123 | Back alignment and structure |
|---|
Score = 66.4 bits (162), Expect = 1e-13
Identities = 16/91 (17%), Positives = 22/91 (24%), Gaps = 3/91 (3%)
Query: 14 PGKPTDLEATDWDKDHVDLQWTPPISDGGSPIT---GYVVEMKDKTGNWEKAVVVPAGET 70
P ++A D V + W + Y V + K
Sbjct: 19 MLPPVGVQAVALTHDAVRVSWADNSVPKNQKTSEVRLYTVRWRTSFSASAKYKSEDTTSL 78
Query: 71 SCTVPGLIEGETYQFQVRAVNAAGPGEASKP 101
S T GL Y+F V S
Sbjct: 79 SYTATGLKPNTMYEFSVMVTKNRRSSTWSMT 109
|
| >3qwq_B Adnectin; cell surface receptor, tyrosine kinase, glycoprotein, adnect antitumor, drug, engineered binding protein; HET: NAG BMA MAN FUC; 2.75A {Homo sapiens} PDB: 3qwr_D* Length = 114 | Back alignment and structure |
|---|
Score = 66.1 bits (161), Expect = 2e-13
Identities = 20/90 (22%), Positives = 27/90 (30%), Gaps = 5/90 (5%)
Query: 14 PGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGN-WEKAVVVPAGETSC 72
P DLE + + W Y + + GN + VP +
Sbjct: 4 SDVPRDLEVVAATPTSLLISWDSG----RGSYQYYRITYGETGGNSPVQEFTVPGPVHTA 59
Query: 73 TVPGLIEGETYQFQVRAVNAAGPGEASKPT 102
T+ GL G Y V AV P T
Sbjct: 60 TISGLKPGVDYTITVYAVTDHKPHADGPHT 89
|
| >1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363 | Back alignment and structure |
|---|
Score = 71.0 bits (173), Expect = 2e-13
Identities = 39/313 (12%), Positives = 85/313 (27%), Gaps = 37/313 (11%)
Query: 190 QTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVTGTEFTDNNVHEGKAYEYRVS 249
+ L I D+ Y +E+ T +D ++ +G++ +
Sbjct: 61 LWDQGNFPLIIKNLKIEDSDTYICEVEDQKEEVQ-LLVFGLTANSDTHLLQGQSLTLTLE 119
Query: 250 AVNAAGTEKPKISLDALIGKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMAD 309
+ P + + + +L++ +DSG + +
Sbjct: 120 S---PPGSSPSVQC-----RSPRGKNIQGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFK 171
Query: 310 IEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLA 369
I++VV++ + E V S+ +G
Sbjct: 172 IDIVVLAFQKASS---IVYKKEGEQVEFSFPLAFTVEKLTGSG----------------- 211
Query: 370 GEEFTITVPFSGRPKPTPIWTVNGDEVS-----PDGRIKFETSENQTIYRNKSAKRATDS 424
E + K + + EVS D +++ + ++ + S
Sbjct: 212 --ELWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGS 269
Query: 425 GSYTIQLVNTVGSDSASCKVYVVDKPSPPQG-PLDVSDITPESCSLSWKPPLDDGGSPIT 483
G+ T+ L G + V+ + +V T LS K +
Sbjct: 270 GNLTLALEAKTGKLHQEVNLVVMRATQLQKNLTCEVWGPTSPKLMLSLKLENKEAKVSKR 329
Query: 484 NYVVEKYESATGV 496
V G+
Sbjct: 330 EKAVWVLNPEAGM 342
|
| >2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 100 | Back alignment and structure |
|---|
Score = 65.4 bits (160), Expect = 2e-13
Identities = 25/98 (25%), Positives = 39/98 (39%), Gaps = 2/98 (2%)
Query: 352 GAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQT 411
G P+ +M++ G + SG P P W +NG V D K SE
Sbjct: 4 GPPRFIQVP--ENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGL 61
Query: 412 IYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDK 449
RA+D+G+Y N G + + ++ V+ K
Sbjct: 62 HSLIFEVVRASDAGAYACVAKNRAGEATFTVQLDVLAK 99
|
| >3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241 | Back alignment and structure |
|---|
Score = 69.2 bits (169), Expect = 2e-13
Identities = 29/190 (15%), Positives = 56/190 (29%), Gaps = 44/190 (23%)
Query: 281 SLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWK 340
SL +++ V D G Y +N +G + V+ + +
Sbjct: 73 SLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERS-------------------PHR 113
Query: 341 PPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWT----VNGDEV 396
P + G P + T + G + +P W VNG +V
Sbjct: 114 PIL------QAGLPA--------NQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKV 159
Query: 397 SPDGRIKFETSENQTIYRNKSAK-------RATDSGSYTIQLVNTVGSDSASCKVYVVDK 449
PDG ++ ++ D G Y + N +G + + V
Sbjct: 160 GPDGTPYVTVLKSWISESVEADVRLRLANVSERDGGEYLCRATNFIGVAEKAFWLSVHGP 219
Query: 450 PSPPQGPLDV 459
+ + ++
Sbjct: 220 RAAEEELVEA 229
|
| >3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241 | Back alignment and structure |
|---|
Score = 62.6 bits (152), Expect = 3e-11
Identities = 27/109 (24%), Positives = 44/109 (40%), Gaps = 10/109 (9%)
Query: 351 TGAPKITSDLSI--RDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSE 408
TGAP T + + + V A P +G P P+ W NG E + RI
Sbjct: 9 TGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLR 68
Query: 409 NQ----TIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPP 453
+Q + +S +D G+YT + N GS + + V+++
Sbjct: 69 HQQWSLVM---ESVVP-SDRGNYTCVVENKFGSIRQTYTLDVLERSPHR 113
|
| >3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241 | Back alignment and structure |
|---|
Score = 48.4 bits (115), Expect = 2e-06
Identities = 27/197 (13%), Positives = 48/197 (24%), Gaps = 43/197 (21%)
Query: 174 WSINGQVCQIGGRADVQTTKSE-TVLDIPFCSRSDTGHYSLTLENNLGTATASAHVT--- 229
W NG+ + R + + L + SD G+Y+ +EN G+ + +
Sbjct: 49 WLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLE 108
Query: 230 ---------GTEFTDNNVHEGKAYEYRVSAV---NAAGTEKPKIS--------------- 262
+ G +P I
Sbjct: 109 RSPHRPILQAGLPANQTAVLGS------DVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPD 162
Query: 263 --LDALIGKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGP 320
+ K L + N +D G Y A N G+ + V
Sbjct: 163 GTPYVTVLKSWISESVEADVRLRLANVSERDGGEYLCRATNFIGVAEKAFWLSVHGPRAA 222
Query: 321 PTGPIDYTTVTPESVSM 337
+ E+ S+
Sbjct: 223 EEELV----EADEAGSV 235
|
| >3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384 | Back alignment and structure |
|---|
Score = 71.0 bits (174), Expect = 2e-13
Identities = 58/294 (19%), Positives = 90/294 (30%), Gaps = 64/294 (21%)
Query: 174 WSINGQ-VCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTAT-ASAHVTGT 231
W N Q R Q T + L I +SD G+Y+ + N +
Sbjct: 137 WIFNEYPSYQDNRRFVSQETGN---LYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLI 193
Query: 232 EFTDNNVHEGKAYEYRVSAVN--------------AAGTEKPKISLDALIGKRI--KEFV 275
D + E + A G P I GK I K
Sbjct: 194 LRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKARR 253
Query: 276 TSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESV 335
+ L I N ++D+G Y+ A+N G ++A ++ ++P
Sbjct: 254 HKSNGILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYAQP--------NWVQIIN-- 303
Query: 336 SMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDE 395
D+ V E +GRPKPT W NGD
Sbjct: 304 ----------------------------DIHVAMEESVFWECKANGRPKPTYRWLKNGDP 335
Query: 396 VSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDK 449
+ RI+ E T+ +D+G Y N G +S ++ V+ +
Sbjct: 336 LLTRDRIQI---EQGTLNITIVNL--SDAGMYQCVAENKHGVIFSSAELSVIAE 384
|
| >3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384 | Back alignment and structure |
|---|
Score = 68.3 bits (167), Expect = 1e-12
Identities = 48/300 (16%), Positives = 91/300 (30%), Gaps = 48/300 (16%)
Query: 174 WSINGQVCQIGGRADVQTTKSETVLDIP-FCSRSDTGHYSLTLENNLGTATA-SAHVT-- 229
W +NG + D + + + L I D G Y N+ GT + A +
Sbjct: 42 WKLNGT--DVDIGMDFRYSVVDGSLLINNPNKTQDAGTYQCIATNSFGTIVSREAKLQFA 99
Query: 230 ------GTEFTDNNVHEGKAYEYRVSAVNAAGTEKPKIS---LDALIGKRIKEFVTSTTA 280
+ +V G+ + + + + + + FV+ T
Sbjct: 100 YLENFKTRTRSTVSVRRGQGMVLLCGPP--PHSGELSYAWIFNEYPSYQDNRRFVSQETG 157
Query: 281 SLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWK 340
+L I + D G Y N GPPT + + V ++
Sbjct: 158 NLYIAKVEKSDVGNYTCVVTNTVTNH---------KVLGPPT----PLILRNDGVMGEYE 204
Query: 341 PPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDG 400
P + P+ + G + G P PT +W +
Sbjct: 205 PKI------EVQFPE--------TVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARK 250
Query: 401 RIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQGPLDVS 460
+ +++ I + D+GSY N+ G + A ++ +P+ Q D+
Sbjct: 251 ARRHKSNGILEI----PNFQQEDAGSYECVAENSRGKNVAKGQLTFYAQPNWVQIINDIH 306
|
| >2dkm_A Collagen alpha-1(XX) chain; FN3 domain, KIAA1510, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104 | Back alignment and structure |
|---|
Score = 65.2 bits (159), Expect = 2e-13
Identities = 20/94 (21%), Positives = 28/94 (29%), Gaps = 6/94 (6%)
Query: 17 PTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDK-TGNWEKAVVVPAGETSCTVP 75
P L V L W P + T Y+V E+ V G +
Sbjct: 12 PRALTLAAVTPRTVHLTWQPS-----AGATHYLVRCSPASPKGEEEEREVQVGRPEVLLD 66
Query: 76 GLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKP 109
GL G Y+ V+++ EA A
Sbjct: 67 GLEPGRDYEVSVQSLRGPEGSEARGIRARTPTSG 100
|
| >2cum_A Tenascin-X; hexabrachion-like, fibronectin type III domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 105 | Back alignment and structure |
|---|
Score = 64.8 bits (158), Expect = 4e-13
Identities = 20/91 (21%), Positives = 34/91 (37%), Gaps = 5/91 (5%)
Query: 13 EPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVVVPAGETSC 72
P DLEA + L WT P GY++ G + +++P G TS
Sbjct: 7 GLEAPRDLEAKEVTPRTALLTWTEPPV----RPAGYLLSFHTPGGQT-QEILLPGGITSH 61
Query: 73 TVPGLIEGETYQFQVRAVNAAGPGEASKPTA 103
+ GL +Y +++A+ +
Sbjct: 62 QLLGLFPSTSYNARLQAMWGQSLLPPVSTSF 92
|
| >2cum_A Tenascin-X; hexabrachion-like, fibronectin type III domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 105 | Back alignment and structure |
|---|
Score = 38.2 bits (89), Expect = 7e-04
Identities = 9/47 (19%), Positives = 19/47 (40%), Gaps = 6/47 (12%)
Query: 449 KPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATG 495
P+ L+ ++TP + L+W P Y++ + + G
Sbjct: 7 GLEAPRD-LEAKEVTPRTALLTWTEPP----VRPAGYLLS-FHTPGG 47
|
| >2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212 | Back alignment and structure |
|---|
Score = 67.5 bits (165), Expect = 4e-13
Identities = 35/215 (16%), Positives = 56/215 (26%), Gaps = 43/215 (20%)
Query: 253 AAGTEKPKIS-------LDALIGKRIKEFVTSTTASLNIKNSVRK-DSGIYKIEAKNDYG 304
A G P I + + + L I+ D Y+ A+N G
Sbjct: 30 ARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISILRIEPVRAGRDDAPYECVAENGVG 89
Query: 305 IDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRD 364
++VS + +G G P IT
Sbjct: 90 ----------------------------DAVSADATLTIYEGDKTPAGFPVITQGPG--T 119
Query: 365 MTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDS 424
+ G +T G P P W N +V I R D
Sbjct: 120 RVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLKDGFLQIEN----SREEDQ 175
Query: 425 GSYTIQLVNTVGSDSASC-KVYVVDKPSPPQGPLD 458
G Y N++G++ + +YV + +
Sbjct: 176 GKYECVAENSMGTEHSKATNLYVKVRRVGTKHHHH 210
|
| >2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212 | Back alignment and structure |
|---|
Score = 55.2 bits (133), Expect = 6e-09
Identities = 24/107 (22%), Positives = 38/107 (35%), Gaps = 5/107 (4%)
Query: 353 APKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSP-DGRIKFETSENQ- 410
P+I ++ V G + G P P+ +W NG +VS R
Sbjct: 6 PPEIIR--KPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGI 63
Query: 411 TIYRNKSAKRATDSGSYTIQLVNTVG-SDSASCKVYVVDKPSPPQGP 456
+I R + + D Y N VG + SA + + + P G
Sbjct: 64 SILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGF 110
|
| >2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212 | Back alignment and structure |
|---|
Score = 41.7 bits (98), Expect = 2e-04
Identities = 34/178 (19%), Positives = 55/178 (30%), Gaps = 30/178 (16%)
Query: 174 WSINGQ-VCQIGGRADVQTTK-SETVLDI-PFCSRSDTGHYSLTLENNLGTA-TASAHVT 229
W NG+ V R V ++L I P + D Y EN +G A +A A +T
Sbjct: 40 WRKNGKKVSGTQSRYTVLEQPGGISILRIEPVRAGRDDAPYECVAENGVGDAVSADATLT 99
Query: 230 --------------GTEFTDNNVHEGKAYEYRVSAV---NAAGTEKPKIS--LDALIGKR 270
+ G + + A G P I +
Sbjct: 100 IYEGDKTPAGFPVITQGPGTRVIEVGH------TVLMTCKAIGNPTPNIYWIKNQTKVDM 153
Query: 271 IKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMAD-IEVVVVSKPGPPTGPIDY 327
+ L I+NS +D G Y+ A+N G + + + V + +
Sbjct: 154 SNPRYSLKDGFLQIENSREEDQGKYECVAENSMGTEHSKATNLYVKVRRVGTKHHHHH 211
|
| >1x5j_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 113 | Back alignment and structure |
|---|
Score = 64.5 bits (157), Expect = 5e-13
Identities = 17/89 (19%), Positives = 24/89 (26%), Gaps = 3/89 (3%)
Query: 17 PTDLEATDWDKDHVDLQWTPP---ISDGGSPITGYVVEMKDKTGNWEKAVVVPAGETSCT 73
P ++A+ D + + W + Y V K K A S
Sbjct: 12 PVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTKYKNANATTLSYL 71
Query: 74 VPGLIEGETYQFQVRAVNAAGPGEASKPT 102
V GL Y+F V S
Sbjct: 72 VTGLKPNTLYEFSVMVTKGRRSSTWSMTA 100
|
| >3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218 | Back alignment and structure |
|---|
Score = 67.6 bits (165), Expect = 5e-13
Identities = 29/216 (13%), Positives = 60/216 (27%), Gaps = 42/216 (19%)
Query: 253 AAGTEKPKIS--LDALIGKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDM-AD 309
A G + K I T+ L KD+G Y N++ +
Sbjct: 42 ATGHPFVQYQWFKM---NKEIPN---GNTSELIFNAVHVKDAGFYVCRVNNNFTFEFSQW 95
Query: 310 IEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLA 369
++ V P +D + + +I + + ++
Sbjct: 96 SQLDVCDIPESFQRSVDGVSESK---------------------LQICVEPT--SQKLMP 132
Query: 370 GEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTI 429
G + G P P W N ++ + + +Y G+Y
Sbjct: 133 GSTLVLQCVAVGSPIPHYQWFKNELPLTHETK---------KLYMVPYVDLE-HQGTYWC 182
Query: 430 QLVNTVGSDSASCKVYVVDKPSPPQGPLDVSDITPE 465
+ N S + ++D+ + P + T +
Sbjct: 183 HVYNDRDSQDSKKVEIIIDELNNLGHPDNKEQTTDQ 218
|
| >3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218 | Back alignment and structure |
|---|
Score = 46.4 bits (110), Expect = 6e-06
Identities = 21/113 (18%), Positives = 36/113 (31%), Gaps = 13/113 (11%)
Query: 353 APKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTI 412
KIT + VLAG+ + +G P W E+ + +
Sbjct: 18 GSKITVNPE--SKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNGNTSELIFNAVHV- 74
Query: 413 YRNKSAKRATDSGSYTIQLVNTVGSD-SASCKVYVVDKPSPPQGPLDVSDITP 464
D+G Y ++ N + S ++ V D P Q +D +
Sbjct: 75 ---------KDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESK 118
|
| >3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218 | Back alignment and structure |
|---|
Score = 46.4 bits (110), Expect = 7e-06
Identities = 20/168 (11%), Positives = 40/168 (23%), Gaps = 40/168 (23%)
Query: 194 SETVLDIPFCSRSDTGHYSLTLENNLGTA-TASAHVT----------------------G 230
+ + L D G Y + NN + + +
Sbjct: 63 NTSELIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQIC 122
Query: 231 TEFTDNNVHEGKAYEYRVSAV---NAAGTEKPKIS--LDALIGKRIKEFVTSTTASLNIK 285
E T + G + V A G+ P + + T +
Sbjct: 123 VEPTSQKLMPGS------TLVLQCVAVGSPIPHYQWFKN---ELPLTH---ETKKLYMVP 170
Query: 286 NSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPE 333
+ G Y ND + +++ + P + T +
Sbjct: 171 YVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDELNNLGHPDNKEQTTDQ 218
|
| >1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X Length = 103 | Back alignment and structure |
|---|
Score = 64.4 bits (157), Expect = 5e-13
Identities = 21/106 (19%), Positives = 34/106 (32%), Gaps = 11/106 (10%)
Query: 350 ITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSEN 409
+ AP IT S + + I G PKP W NG ++ I +
Sbjct: 1 VHFAPTITFLES-----PTSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVT 55
Query: 410 QTIYRN-----KSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKP 450
+ + ++G YT+ N G D + + P
Sbjct: 56 NHTEYHGCLQLDNPTHM-NNGDYTLIAKNEYGKDEKQISAHFMGWP 100
|
| >1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X Length = 103 | Back alignment and structure |
|---|
Score = 50.1 bits (120), Expect = 5e-08
Identities = 14/44 (31%), Positives = 20/44 (45%)
Query: 276 TSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPG 319
T L + N ++G Y + AKN+YG D I + PG
Sbjct: 58 TEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHFMGWPG 101
|
| >3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404 | Back alignment and structure |
|---|
Score = 69.5 bits (170), Expect = 6e-13
Identities = 41/199 (20%), Positives = 61/199 (30%), Gaps = 44/199 (22%)
Query: 253 AAGTEKPKIS---LDALIGKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMAD 309
A+G P I+ + K + +L I N +DSG Y A N G
Sbjct: 246 ASGVPTPDIAWYKKGGDLPSD-KAKFENFNKALRITNVSEEDSGEYFCLASNKMGSIRHT 304
Query: 310 IEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLA 369
I V V + P Y P+ ++ +
Sbjct: 305 ISVRVKAAP--------YWLDEPK------------------------------NLILAP 326
Query: 370 GEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTI 429
GE+ + +G PKPT W VNG+ + TI + + Y
Sbjct: 327 GEDGRLVCRANGNPKPTVQWMVNGEPLQSAPPNPNREVAGDTIIFRDTQI--SSRAVYQC 384
Query: 430 QLVNTVGSDSASCKVYVVD 448
N G A+ V V+D
Sbjct: 385 NTSNEHGYLLANAFVSVLD 403
|
| >3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404 | Back alignment and structure |
|---|
Score = 64.9 bits (158), Expect = 2e-11
Identities = 52/304 (17%), Positives = 79/304 (25%), Gaps = 48/304 (15%)
Query: 174 WSINGQVCQIGGRADVQTTKSETVLDIPFCS----RSDTGHYSLTLENNLGTA-TASAHV 228
W+ N + I V + L I F S G Y N GTA + +
Sbjct: 51 WTRNSRFFNIAKDPRVSMRRRSGTLVIDFRSGGRPEEYEGEYQCFARNKFGTALSNRIRL 110
Query: 229 T-------GTEFTDN-NVHEGKAYEYRVSAVNAAGTEKPKIS---LDALIGKRIKEFVTS 277
E D V EG + + G P I + K
Sbjct: 111 QVSKSPLWPKENLDPVVVQEGAPLTLQCNPP--PGLPSPVIFWMSSSMEPITQDKRVSQG 168
Query: 278 TTASLNIKNSVRKDS-GIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVS 336
L N + +D Y A+ + + + V
Sbjct: 169 HNGDLYFSNVMLQDMQTDYSCNARFHFTHTIQQKNPFTL-------------KVLTTRGV 215
Query: 337 MSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEV 396
P + + VL G + + SG P P W G ++
Sbjct: 216 AERTPSF------------MYPQGTASSQMVLRGMDLLLECIASGVPTPDIAWYKKGGDL 263
Query: 397 SPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQGP 456
D ++ I + DSG Y N +GS + V V P P
Sbjct: 264 PSDKAKFENFNKALRI---TNVS-EEDSGEYFCLASNKMGSIRHTISVRVKAAPYWLDEP 319
Query: 457 LDVS 460
++
Sbjct: 320 KNLI 323
|
| >3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404 | Back alignment and structure |
|---|
Score = 53.3 bits (128), Expect = 9e-08
Identities = 22/140 (15%), Positives = 44/140 (31%), Gaps = 14/140 (10%)
Query: 188 DVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVT-------GTEFTDNNVHE 240
+ L I S D+G Y N +G+ + V E + +
Sbjct: 267 KAKFENFNKALRITNVSEEDSGEYFCLASNKMGSIRHTISVRVKAAPYWLDEPKNLILAP 326
Query: 241 GKAYEYRVSAVNAAGTEKPKIS----LDALIGKRIKEFVTSTTASLNIKNSVRKDSGIYK 296
G+ A G KP + + L ++ +++ +Y+
Sbjct: 327 GEDGRLVCRA---NGNPKPTVQWMVNGEPLQSAPPNPNREVAGDTIIFRDTQISSRAVYQ 383
Query: 297 IEAKNDYGIDMADIEVVVVS 316
N++G +A+ V V+
Sbjct: 384 CNTSNEHGYLLANAFVSVLD 403
|
| >3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404 | Back alignment and structure |
|---|
Score = 48.3 bits (115), Expect = 4e-06
Identities = 26/117 (22%), Positives = 36/117 (30%), Gaps = 8/117 (6%)
Query: 350 ITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSP--DGRIKFETS 407
+T P IT S +D V + I G P P+ WT N + D R+
Sbjct: 13 LTQPPTITKQ-SAKDHIVDPRDNILIECEAKGNPAPSFHWTRNSRFFNIAKDPRVSMRRR 71
Query: 408 E-NQTIYRNKSAKRATDSGSYTIQLVNTVG---SDSASCKVYVVDK-PSPPQGPLDV 459
I + G Y N G S+ +V P P+ V
Sbjct: 72 SGTLVIDFRSGGRPEEYEGEYQCFARNKFGTALSNRIRLQVSKSPLWPKENLDPVVV 128
|
| >2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189 | Back alignment and structure |
|---|
Score = 66.3 bits (162), Expect = 7e-13
Identities = 37/202 (18%), Positives = 61/202 (30%), Gaps = 49/202 (24%)
Query: 253 AAGTEKPKIS-------LDALIGKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDY-G 304
+ + P +S + + R + L I N + D GIY+ E + + G
Sbjct: 26 VSSSPAPAVSWLYHNEEVTTISDNRFAMLANNN---LQILNINKSDEGIYRCEGRVEARG 82
Query: 305 IDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRD 364
+V+V+ P P I+ +
Sbjct: 83 EIDFRDIIVIVNVP-----------------------------------PAISMPQKSFN 107
Query: 365 MTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDS 424
T GEE T + SG P+P W NG + + + N + +D
Sbjct: 108 ATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYIL-KGSNTELTVRNIIN--SDG 164
Query: 425 GSYTIQLVNTVGSDSASCKVYV 446
G Y + N G D + V
Sbjct: 165 GPYVCRATNKAGEDEKQAFLQV 186
|
| >2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189 | Back alignment and structure |
|---|
Score = 50.5 bits (121), Expect = 2e-07
Identities = 18/112 (16%), Positives = 33/112 (29%), Gaps = 8/112 (7%)
Query: 353 APKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTI 412
+S GE+ + S P P W + +EV+ +F N +
Sbjct: 2 MLTFREVVS--PQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNL 59
Query: 413 YRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVV----DKPSPPQGPLDVS 460
+D G Y + + + V+ S PQ + +
Sbjct: 60 QILNI--NKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNAT 109
|
| >1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315 | Back alignment and structure |
|---|
Score = 68.2 bits (166), Expect = 8e-13
Identities = 43/296 (14%), Positives = 70/296 (23%), Gaps = 56/296 (18%)
Query: 174 WSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVT---- 229
W + + + + + L D+GHY + N+
Sbjct: 40 WYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVEDSGHYYCVVRNSSYCLRIKISAKFVEN 99
Query: 230 -------GTEFTDNNVHEGKAYE---YRVSAVNAAGTEKPKIS--LDALIGKRIKEFVTS 277
+ + E PK+ D +
Sbjct: 100 EPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSG 159
Query: 278 TTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSM 337
L + N K G Y A Y K P T I++ T+ +
Sbjct: 160 VKDRLIVMNVAEKHRGNYTCHASYTYL-----------GKQYPITRVIEFITLEENKPT- 207
Query: 338 SWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVS 397
PV I T M V G + + +G+ W NG +
Sbjct: 208 ---RPV------IVSPANET-------MEVDLGSQIQLICNVTGQLSDIAYWKWNGSVID 251
Query: 398 PDGRIKFETSENQTIYRN------------KSAKRATDSGSYTIQLVNTVGSDSAS 441
D + E + N + +T NT G D+A
Sbjct: 252 EDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAY 307
|
| >1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315 | Back alignment and structure |
|---|
Score = 48.6 bits (115), Expect = 2e-06
Identities = 20/200 (10%), Positives = 38/200 (19%), Gaps = 50/200 (25%)
Query: 267 IGKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPID 326
+ + L + +DSG Y +N I V
Sbjct: 49 VSTEQASRIHQHKEKLWFVPAKVEDSGHYYCVVRNSSYCLRIKISAKFVENEPNLCYNAQ 108
Query: 327 YTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPF------S 380
+I + + + P+
Sbjct: 109 ----------------------------------AIFKQKLPVAGDGGLVCPYMEFFKNE 134
Query: 381 GRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSA 440
P W + + D + + + G+YT T
Sbjct: 135 NNELPKLQWYKDCKPLLLDNIHFSGVKDRLIV---MNVAE-KHRGNYTCHASYTYLGKQY 190
Query: 441 SC------KVYVVDKPSPPQ 454
+KP+ P
Sbjct: 191 PITRVIEFITLEENKPTRPV 210
|
| >1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315 | Back alignment and structure |
|---|
Score = 42.0 bits (98), Expect = 3e-04
Identities = 17/110 (15%), Positives = 28/110 (25%), Gaps = 12/110 (10%)
Query: 353 APKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPI-WTVNGDEVSPDGRIKFETSENQT 411
A K + A E P + I W + + T +
Sbjct: 3 ADKCKEREEKIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVS------TEQASR 56
Query: 412 IYRNKSA---KRAT--DSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQGP 456
I+++K A DSG Y + N+ V+
Sbjct: 57 IHQHKEKLWFVPAKVEDSGHYYCVVRNSSYCLRIKISAKFVENEPNLCYN 106
|
| >4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292 | Back alignment and structure |
|---|
Score = 68.1 bits (166), Expect = 9e-13
Identities = 37/288 (12%), Positives = 74/288 (25%), Gaps = 60/288 (20%)
Query: 182 QIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVT--------GTEF 233
+ + S ++L + +TG Y T + +A+ H+
Sbjct: 37 PPSPHWTLYSDGSSSILSTNNATFQNTGTYRCTEPGDPLGGSAAIHLYVKDPARPWNVLA 96
Query: 234 TDNNVHEGKAYEYRVSAV---NAAGTE-KPKISLDALIGKRI---KEFVTSTTASLNIKN 286
+ V E + A+ + +SL + G+ + + S I
Sbjct: 97 QEVVVFEDQ------DALLPCLLTDPVLEAGVSLVRVRGRPLMRHTNYSFSPWHGFTIHR 150
Query: 287 SVRKDSGIYKIEAKNDYGIDM-ADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDD 345
+ S Y+ A M I + V P
Sbjct: 151 AKFIQSQDYQCSALMGGRKVMSISIRLKVQKVIPGP------------------------ 186
Query: 346 GGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGD---EVSPDGRI 402
P +T + ++ + GE I S ++ + + +
Sbjct: 187 --------PALTLVPA--ELVRIRGEAAQIVCSASSVDVNFDVFLQHNNTKLAIPQQSDF 236
Query: 403 KFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKP 450
+ +G+Y+ N G S S VV+
Sbjct: 237 HNNRYQKVLTLNLDQV-DFQHAGNYSCVASNVQGKHSTSMFFRVVESA 283
|
| >4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292 | Back alignment and structure |
|---|
Score = 50.0 bits (119), Expect = 7e-07
Identities = 24/197 (12%), Positives = 49/197 (24%), Gaps = 44/197 (22%)
Query: 260 KISLDALIGKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPG 319
+ D + +++ L+ N+ +++G Y+ D A I + V
Sbjct: 31 SVEWDGPPSPHWTLYSDGSSSILSTNNATFQNTGTYRCTEPGDPLGGSAAIHLYVKDPAR 90
Query: 320 PPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTIT-VP 378
P V + ++ V ++ + +
Sbjct: 91 P-------WNVLAQ------------------------------EVVVFEDQDALLPCLL 113
Query: 379 FSGRPKPTPIWT-VNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYT-IQLVNTVG 436
+ V G + F TI + S Y L+
Sbjct: 114 TDPVLEAGVSLVRVRGRPLMRHTNYSFSPWHGFTI----HRAKFIQSQDYQCSALMGGRK 169
Query: 437 SDSASCKVYVVDKPSPP 453
S S ++ V P
Sbjct: 170 VMSISIRLKVQKVIPGP 186
|
| >1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens} Length = 99 | Back alignment and structure |
|---|
Score = 63.4 bits (155), Expect = 9e-13
Identities = 26/94 (27%), Positives = 38/94 (40%), Gaps = 2/94 (2%)
Query: 353 APKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTI 412
P L D +V G++ +++ G PKP W N V PD R E +E
Sbjct: 5 PPTFKVSL--MDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLC 62
Query: 413 YRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYV 446
A D+G YT + VN G+ ++ V
Sbjct: 63 RLRILAAERGDAGFYTCKAVNEYGARQCEARLEV 96
|
| >1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens} Length = 99 | Back alignment and structure |
|---|
Score = 37.6 bits (88), Expect = 9e-04
Identities = 13/47 (27%), Positives = 20/47 (42%)
Query: 268 GKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVV 314
+R E L I + R D+G Y +A N+YG + + V
Sbjct: 50 QRRFAEEAEGGLCRLRILAAERGDAGFYTCKAVNEYGARQCEARLEV 96
|
| >2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100 | Back alignment and structure |
|---|
Score = 63.1 bits (154), Expect = 1e-12
Identities = 26/105 (24%), Positives = 37/105 (35%), Gaps = 7/105 (6%)
Query: 347 GTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFET 406
G+ + KI + L D TV G+E + S WT NG V R+K
Sbjct: 1 GSSGSSGLKILTPL--TDQTVNLGKEICLKCEISENIPGK--WTKNGLPVQESDRLKVVQ 56
Query: 407 SENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPS 451
+A D G Y + + KV+V+ PS
Sbjct: 57 KGRIHKLVIANA-LTEDEGDYVF--APDAYNVTLPAKVHVISGPS 98
|
| >1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191 | Back alignment and structure |
|---|
Score = 65.6 bits (160), Expect = 1e-12
Identities = 30/170 (17%), Positives = 48/170 (28%), Gaps = 41/170 (24%)
Query: 279 TASLNIKNSVRKDSGIYKIEAKNDYG-IDMADIEVVVVSKPGPPTGPIDYTTVTPESVSM 337
+++L I N+ D+GIYK + G A + V + K P
Sbjct: 61 SSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKL--------MFKNAPT---- 108
Query: 338 SWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVS 397
GE+ I PT IW G +V
Sbjct: 109 --------------------------PQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVI 142
Query: 398 PDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVV 447
++F N + K TD G+Y + + + V+
Sbjct: 143 LKKDVRFIVLSNNYLQIRGIKK--TDEGTYRCEGRILARGEINFKDIQVI 190
|
| >1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191 | Back alignment and structure |
|---|
Score = 42.5 bits (100), Expect = 1e-04
Identities = 29/132 (21%), Positives = 46/132 (34%), Gaps = 17/132 (12%)
Query: 197 VLDIPFCSRSDTGHYSLTLENNLGTA-TASAHVT-------GTEFTDNNVHEGKAYEYRV 248
L I + D G Y + GT A+ +V T EG+
Sbjct: 63 TLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVC 122
Query: 249 SAVNAAGTEKPKIS----LDALIGKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYG 304
V + P I +I K+ F+ + L I+ + D G Y+ E +
Sbjct: 123 DVV---SSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILAR 179
Query: 305 --IDMADIEVVV 314
I+ DI+V+V
Sbjct: 180 GEINFKDIQVIV 191
|
| >1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191 | Back alignment and structure |
|---|
Score = 40.2 bits (94), Expect = 6e-04
Identities = 24/115 (20%), Positives = 39/115 (33%), Gaps = 14/115 (12%)
Query: 354 PKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPI-WT-VNGDEVSP-DGRIKFETSENQ 410
++ S + GE +G K I W NG+++SP RI +++
Sbjct: 3 LQVDIVPS--QGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDD 60
Query: 411 ----TIYRNKSAKRATDSGSYTIQLVNTVGSD-SASCKVYVVDKPSPPQGPLDVS 460
TIY D+G Y + G+ A+ V + K P
Sbjct: 61 SSTLTIYN----ANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQE 111
|
| >2cuh_A Tenascin-X; fibronectin type III domain, extracellular matrix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 115 | Back alignment and structure |
|---|
Score = 63.2 bits (154), Expect = 1e-12
Identities = 19/100 (19%), Positives = 33/100 (33%), Gaps = 6/100 (6%)
Query: 14 PGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVVVPAGETSCT 73
P PT L A + + L W PP + P+ Y +++ P
Sbjct: 8 PDGPTQLRALNLTEGFAVLHWKPPQN----PVDTYDIQVTAPGAP-PLQAETPGSAVDYP 62
Query: 74 VPGLIEGETYQFQVRAVNAAGPGEASKPTAP-IVAKPKNL 112
+ L+ Y VR + + T + P++L
Sbjct: 63 LHDLVLHTNYTATVRGLRGPNLTSPASITFTTGLEAPRDL 102
|
| >1x4y_A Biregional cell adhesion molecule-related/DOWN- regulated oncogenes (CDON)binding...; fibronectin type III, FN3; NMR {Mus musculus} SCOP: b.1.2.1 Length = 114 | Back alignment and structure |
|---|
Score = 62.9 bits (153), Expect = 2e-12
Identities = 15/93 (16%), Positives = 33/93 (35%), Gaps = 4/93 (4%)
Query: 14 PGKPTDLEATDWDKDHVDLQWT-PPISDGGSPITGYVVEMKDKTGNWEKA---VVVPAGE 69
P ++ + L+W P S+ +PI G+ + + + + +V
Sbjct: 9 VAGPYITFTDAVNETTIMLKWMYIPASNNNTPIHGFYIYYRPTDSDNDSDYKKDMVEGDR 68
Query: 70 TSCTVPGLIEGETYQFQVRAVNAAGPGEASKPT 102
++ L +Y +++ N G E S
Sbjct: 69 YWHSISHLQPETSYDIKMQCFNEGGESEFSNVM 101
|
| >3e0g_A Leukemia inhibitory factor receptor; IG domain, cytokine binding homology region (CHR), cell MEMB disease mutation, glycoprotein, membrane; HET: NAG MAN FUC; 3.10A {Homo sapiens} Length = 483 | Back alignment and structure |
|---|
Score = 67.9 bits (165), Expect = 2e-12
Identities = 64/498 (12%), Positives = 131/498 (26%), Gaps = 117/498 (23%)
Query: 30 VDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVVVPAGETSCTVPGLIEGETYQFQVRA 89
W P G +E + ++ + +TS +P L G Y+ + +
Sbjct: 12 WQCSWKAPSGTGRGTDYEVCIEQRSRSCYQLE-------KTSIKIPALSHG-DYEITINS 63
Query: 90 VNAAGPGEASKPTAPIVAKPKNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPL 149
++ G + + +L P
Sbjct: 64 LHDFGSST---SKFTLNEQNVSLIP--------------------------------DTP 88
Query: 150 RALGVRANSTKGWVKLS----EPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFCSR 205
L + A+ + + L H ++ ++ ++ ++ + ++
Sbjct: 89 EILQLSADFSTSTLYLKWNDRGSVFPHRSNVIWEI-KVL---RKESMELVKLVTHQTTLN 144
Query: 206 SDTGHYSLTLENNLGTATASAHVTGTEFTDNNVHEGKAYEYRVSAVNAAGTEKPKIS--- 262
+ + +++ A V + DN G S V +
Sbjct: 145 GKDTLHHWSWASDMPLECAIHFVEIRCYIDNLHFSGLEEWSDWSPVKQISWIPDSQTKVF 204
Query: 263 ----------------------LDALIGKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAK 300
L ALIG + ++ IK S
Sbjct: 205 PQDKVILVGSDITFCCVSQEKVLSALIGHTNCPLIHLDGENVAIKIRNISVSASSGTNVV 264
Query: 301 NDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDG--GTPITGAPKITS 358
++ + P P ++ T + + SW P G T
Sbjct: 265 FTTEDNIFGTVIFAGYPPDTPQQ-LNCETHDLKEIICSWNPGRVTALVGPRATS------ 317
Query: 359 DLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSA 418
+T+ FSG+ +E ++ F+ NQ IY
Sbjct: 318 --------------YTLVESFSGKYVRLKRAEAPTNESY---QLLFQMLPNQEIY----- 355
Query: 419 KRATDSGSYTIQLVNTVGSDSASCKVYVVD--KPSPPQGPLDVSDITPESCSLSWKPPLD 476
++T+ N +G ++ V + + P P V DI + LSW P +
Sbjct: 356 -------NFTLNAHNPLGRSQSTILVNITEKVYPHTPTS-FKVKDINSTAVKLSWHLPGN 407
Query: 477 DGGSPITNYVVEKYESAT 494
+ K ++
Sbjct: 408 FAKINFLCEIEIKKSNSV 425
|
| >3e0g_A Leukemia inhibitory factor receptor; IG domain, cytokine binding homology region (CHR), cell MEMB disease mutation, glycoprotein, membrane; HET: NAG MAN FUC; 3.10A {Homo sapiens} Length = 483 | Back alignment and structure |
|---|
Score = 58.7 bits (141), Expect = 2e-09
Identities = 48/331 (14%), Positives = 95/331 (28%), Gaps = 49/331 (14%)
Query: 199 DIPFCSRSDTGHYSLTLENNLGTATASAHVTGTEFTDNNVHEGKAYEYRVSAVNAAGTEK 258
P + T Y + +E + + + T + G YE +++++ G+
Sbjct: 17 KAPSGTGRGT-DYEVCIEQR---SRSCYQLEKTSIKIPALSHG-DYEITINSLHDFGSST 71
Query: 259 PKISLDALIGK-------RIKEFVTSTTASLNIK----NSVRKDSGIYKIEAKNDYGIDM 307
K +L+ ++ +T++L +K SV E K M
Sbjct: 72 SKFTLNEQNVSLIPDTPEILQLSADFSTSTLYLKWNDRGSVFPHRSNVIWEIKVLRKESM 131
Query: 308 ADIEVVVVSKPGPPTGPIDYTTVTPE--------SVSMSWKPPVDDGGTP---------- 349
+++V + + + + V +
Sbjct: 132 ELVKLVTHQTTLNGKDTLHHWSWASDMPLECAIHFVEIRCYIDNLHFSGLEEWSDWSPVK 191
Query: 350 -ITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSE 408
I+ P + + +D +L G + T + I N + DG
Sbjct: 192 QISWIPDSQTKVFPQDKVILVGSDITFCCVSQEKVLSALIGHTNCPLIHLDGENVAIKIR 251
Query: 409 NQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQGPLDVSDITPESCS 468
N + S S +V T + ++ P PQ L+ +
Sbjct: 252 N-----------ISVSASSGTNVVFTTEDNIFGTVIFAGYPPDTPQQ-LNCETHDLKEII 299
Query: 469 LSWKPPLDDG--GSPITNYVVEKYESATGVS 497
SW P G T+Y + + S V
Sbjct: 300 CSWNPGRVTALVGPRATSYTLVESFSGKYVR 330
|
| >3e0g_A Leukemia inhibitory factor receptor; IG domain, cytokine binding homology region (CHR), cell MEMB disease mutation, glycoprotein, membrane; HET: NAG MAN FUC; 3.10A {Homo sapiens} Length = 483 | Back alignment and structure |
|---|
Score = 57.5 bits (138), Expect = 5e-09
Identities = 20/104 (19%), Positives = 28/104 (26%), Gaps = 13/104 (12%)
Query: 14 PGKPTDLEATDWDKDHVDLQWTPPISDG--GSPITGYVVEMK--DKTGNWEKAVVVPAGE 69
P P L D + W P G T Y + K ++A
Sbjct: 282 PDTPQQLNCETHDLKEIICSWNPGRVTALVGPRATSYTLVESFSGKYVRLKRAEAPTNES 341
Query: 70 TSCTVPGLIEGETYQFQVRAVNAAGPGEAS---------KPTAP 104
L E Y F + A N G +++ P P
Sbjct: 342 YQLLFQMLPNQEIYNFTLNAHNPLGRSQSTILVNITEKVYPHTP 385
|
| >3e0g_A Leukemia inhibitory factor receptor; IG domain, cytokine binding homology region (CHR), cell MEMB disease mutation, glycoprotein, membrane; HET: NAG MAN FUC; 3.10A {Homo sapiens} Length = 483 | Back alignment and structure |
|---|
Score = 53.3 bits (127), Expect = 1e-07
Identities = 19/99 (19%), Positives = 31/99 (31%), Gaps = 6/99 (6%)
Query: 14 PGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVV----VPAGE 69
P PT + D + V L W P + +E+K E+ V V
Sbjct: 382 PHTPTSFKVKDINSTAVKLSWHLP-GNFAKINFLCEIEIKKSNSVQEQRNVTIQGVENSS 440
Query: 70 TSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAK 108
+ L Y F++R + + SK +
Sbjct: 441 YLVALDKLNPYTLYTFRIRC-STETFWKWSKWSNKKQHL 478
|
| >1wk0_A KIAA0970 protein; fibronectin type III domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 137 | Back alignment and structure |
|---|
Score = 63.1 bits (153), Expect = 3e-12
Identities = 21/99 (21%), Positives = 33/99 (33%), Gaps = 8/99 (8%)
Query: 12 DEPGKPTDLEATDWDKDHVDLQWTPPISDGGS--------PITGYVVEMKDKTGNWEKAV 63
A+D V L W+PP S + GY V + + +
Sbjct: 16 ALLSNIVKPVASDIQARTVVLTWSPPSSLINGETDESSVPELYGYEVLISSTGKDGKYKS 75
Query: 64 VVPAGETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPT 102
V ET+ T+ L Y +V+A + G S+
Sbjct: 76 VYVGEETNITLNDLKPAMDYHAKVQAEYNSIKGTPSEAE 114
|
| >2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 116 | Back alignment and structure |
|---|
Score = 62.4 bits (152), Expect = 3e-12
Identities = 21/103 (20%), Positives = 35/103 (33%), Gaps = 3/103 (2%)
Query: 353 APKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTI 412
AP + VL G+ + S P P W N + V + +N
Sbjct: 15 APMFIYKP--QSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTGR 72
Query: 413 YRNKSAK-RATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQ 454
D+G YT+ VN G + + ++ V +P+
Sbjct: 73 VTLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDVTARPNQTL 115
|
| >2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 116 | Back alignment and structure |
|---|
Score = 40.1 bits (94), Expect = 2e-04
Identities = 12/40 (30%), Positives = 23/40 (57%)
Query: 279 TASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKP 318
+L IK+ +KD+G Y + A N+ G+ + + V ++P
Sbjct: 72 RVTLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDVTARP 111
|
| >2w1n_A O-GLCNACASE NAGJ; hexosaminidase, glycoside hydrolase, fibronectin type-III, beta-N-acetylglucosaminidase, cohesin, hydrolase; 1.80A {Clostridium perfringens} Length = 238 | Back alignment and structure |
|---|
Score = 65.3 bits (158), Expect = 4e-12
Identities = 22/100 (22%), Positives = 42/100 (42%), Gaps = 7/100 (7%)
Query: 9 NPFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVVVPAG 68
+P D +A++ +K +V + WT P + G + GY++ + +K +
Sbjct: 146 SPEIVVNPVRDFKASEINKKNVTVTWTEPETTEG--LEGYILYK-----DGKKVAEIGKD 198
Query: 69 ETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAK 108
ETS T L Y F++ A + G + + A+
Sbjct: 199 ETSYTFKKLNRHTIYNFKIAAKYSNGEVSSKESLTLRTAR 238
|
| >2w1n_A O-GLCNACASE NAGJ; hexosaminidase, glycoside hydrolase, fibronectin type-III, beta-N-acetylglucosaminidase, cohesin, hydrolase; 1.80A {Clostridium perfringens} Length = 238 | Back alignment and structure |
|---|
Score = 43.0 bits (100), Expect = 1e-04
Identities = 18/145 (12%), Positives = 44/145 (30%), Gaps = 11/145 (7%)
Query: 345 DGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKF 404
D + + + G+ + +G P P EV ++
Sbjct: 54 DENAFEYVEAISDDGVFVNAKKIEDGKVRVLVSSLTGEPLP-------AKEVLAKVVLRA 106
Query: 405 ETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQGPLDVSDITP 464
E + ++ G ++ T + + +P + S+I
Sbjct: 107 EAKTEGSNLSVTNSSVGDGEG-LVHEIAGTEKTVNIIEGTSPEIVVNPVR-DFKASEINK 164
Query: 465 ESCSLSWKPPLDDGGSPITNYVVEK 489
++ +++W P G + Y++ K
Sbjct: 165 KNVTVTWTEPETTEG--LEGYILYK 187
|
| >2w1n_A O-GLCNACASE NAGJ; hexosaminidase, glycoside hydrolase, fibronectin type-III, beta-N-acetylglucosaminidase, cohesin, hydrolase; 1.80A {Clostridium perfringens} Length = 238 | Back alignment and structure |
|---|
Score = 40.7 bits (94), Expect = 6e-04
Identities = 36/230 (15%), Positives = 63/230 (27%), Gaps = 22/230 (9%)
Query: 56 TGNWEKAVVVPAGETSCTVPGLIEGETYQFQVRAVNA-AGPGEASKPTAPIVAKPKNL-- 112
G ++A V + + + GE + V A T
Sbjct: 3 HGKLKEAAEVTGSVSLEALEEVQVGENIEVGVGIDELVNAEAFAYDFTLNYDENAFEYVE 62
Query: 113 APRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKG----WVKLSEP 168
A D +N KI+ G+ E K L + +RA + V S
Sbjct: 63 AISDDGVFVNAKKIEDGKVRVLVSSLTGEPLPAKEVLAKVVLRAEAKTEGSNLSVTNSSV 122
Query: 169 FLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNL--------- 219
G + T+ V + S+ ++T+
Sbjct: 123 GDGEGLVHEIAGTEKTVNIIEGTSPEIVVNPVRDFKASEINKKNVTVTWTEPETTEGLEG 182
Query: 220 ------GTATASAHVTGTEFTDNNVHEGKAYEYRVSAVNAAGTEKPKISL 263
G A T +T ++ Y ++++A + G K SL
Sbjct: 183 YILYKDGKKVAEIGKDETSYTFKKLNRHTIYNFKIAAKYSNGEVSSKESL 232
|
| >1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X Length = 126 | Back alignment and structure |
|---|
Score = 62.3 bits (151), Expect = 4e-12
Identities = 23/110 (20%), Positives = 38/110 (34%), Gaps = 8/110 (7%)
Query: 371 EEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAK------RATDS 424
+ I G+P P+ W NG ++ I E E + ++
Sbjct: 16 HHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNN 75
Query: 425 GSYTIQLVNTVGSDSASCKVYVVDKP--SPPQGPLDVSDITPESCSLSWK 472
G+YT+ N G SAS +D P P+ P+ ++ T
Sbjct: 76 GNYTLLAANPFGQASASIMAAFMDNPFEFNPEDPIPDTNSTSGDPVEKKD 125
|
| >1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X Length = 126 | Back alignment and structure |
|---|
Score = 51.9 bits (124), Expect = 2e-08
Identities = 20/114 (17%), Positives = 32/114 (28%), Gaps = 14/114 (12%)
Query: 237 NVHEGKAYEYRVSAVNAAGTEKPKIS---------LDALIGKRIKEFVTSTT---ASLNI 284
+H + + G P + + I E + T L +
Sbjct: 8 QLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRL 67
Query: 285 KNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKP--GPPTGPIDYTTVTPESVS 336
++G Y + A N +G A I + P P PI T T
Sbjct: 68 NQPTHVNNGNYTLLAANPFGQASASIMAAFMDNPFEFNPEDPIPDTNSTSGDPV 121
|
| >2edy_A Receptor-type tyrosine-protein phosphatase F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 103 | Back alignment and structure |
|---|
Score = 61.2 bits (149), Expect = 7e-12
Identities = 29/101 (28%), Positives = 39/101 (38%), Gaps = 10/101 (9%)
Query: 12 DEP-GKPTDLEATDWDKDHVDLQWTPPISDG--GSPITGYVVEMKDKTGNWEKAVVVPAG 68
P G P +L T +L W PP+ G I Y V +D E +
Sbjct: 6 SGPSGFPQNLHVTGLTTSTTELAWDPPVLAERNG-RIISYTVVFRDINSQQELQNITT-- 62
Query: 69 ETSCTVPGLIEGETYQFQVRAVNAAGPGEASKP----TAPI 105
+T T+ GL TY +VRA + G G S T P+
Sbjct: 63 DTRFTLTGLKPDTTYDIKVRAWTSKGSGPLSPSIQSRTMPV 103
|
| >2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118 | Back alignment and structure |
|---|
Score = 61.3 bits (149), Expect = 8e-12
Identities = 27/115 (23%), Positives = 44/115 (38%), Gaps = 5/115 (4%)
Query: 346 GGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFE 405
G + +G P I + TV F ++ +G P PT +W +G VS + +
Sbjct: 1 GSSGSSGPPVIRQGPV--NQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDS-RIK 57
Query: 406 TSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQGPLDVS 460
EN + + + D+G YT G + S + V + P Q P
Sbjct: 58 QLENGVLQIRYA--KLGDTGRYTCIASTPSGEATWSAYIEVQEFGVPVQPPRPTD 110
|
| >2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118 | Back alignment and structure |
|---|
Score = 38.6 bits (90), Expect = 7e-04
Identities = 16/85 (18%), Positives = 23/85 (27%), Gaps = 3/85 (3%)
Query: 253 AAGTEKPKIS---LDALIGKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMAD 309
A G+ P I L+ + L I+ + D+G Y A G
Sbjct: 32 ATGSPVPTILWRKDGVLVSTQDSRIKQLENGVLQIRYAKLGDTGRYTCIASTPSGEATWS 91
Query: 310 IEVVVVSKPGPPTGPIDYTTVTPES 334
+ V P P S
Sbjct: 92 AYIEVQEFGVPVQPPRPTDPNLIPS 116
|
| >2dlh_A Receptor-type tyrosine-protein phosphatase delta; protein-tyrosine phosphatase delta, R-PTP-delta, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 121 | Back alignment and structure |
|---|
Score = 60.9 bits (148), Expect = 1e-11
Identities = 23/93 (24%), Positives = 32/93 (34%), Gaps = 4/93 (4%)
Query: 12 DEPGK-PTDLEATDWDKDHVDLQWTPPISDGGSPITGYVV--EMKDKTGNWEKAVVVPAG 68
P P D++A + +QW P G I GY V M A
Sbjct: 16 QAPSSAPRDVQARMLSSTTILVQWKEPEEPNG-QIQGYRVYYTMDPTQHVNNWMKHNVAD 74
Query: 69 ETSCTVPGLIEGETYQFQVRAVNAAGPGEASKP 101
T+ L+ +TY +V A + G G S
Sbjct: 75 SQITTIGNLVPQKTYSVKVLAFTSIGDGPLSSD 107
|
| >3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201 | Back alignment and structure |
|---|
Score = 63.0 bits (153), Expect = 1e-11
Identities = 29/187 (15%), Positives = 48/187 (25%), Gaps = 33/187 (17%)
Query: 260 KISLDALIGKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPG 319
I + FV+ T +L I N D G Y + + + +
Sbjct: 46 LNEFPVFITMDKRRFVSQTNGNLYIANVEASDKGNYSCFVSSPSITKSVFSKFIPLI--- 102
Query: 320 PPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPF 379
T I D+ L G+ T+
Sbjct: 103 -----------------------PIPERTTKPYPADIVVQFK--DVYALMGQNVTLECFA 137
Query: 380 SGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDS 439
G P P W + + I ++ + + D G Y + N G D
Sbjct: 138 LGNPVPDIRWRKVLEPMPSTAEI---STSGAVLKIFNI--QLEDEGIYECEAENIRGKDK 192
Query: 440 ASCKVYV 446
++YV
Sbjct: 193 HQARIYV 199
|
| >3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201 | Back alignment and structure |
|---|
Score = 44.5 bits (105), Expect = 2e-05
Identities = 30/158 (18%), Positives = 52/158 (32%), Gaps = 19/158 (12%)
Query: 174 WSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVTGTEF 233
W +N I +++ L I SD G+YS + + T + +
Sbjct: 44 WLLNEFPVFITMDKRRFVSQTNGNLYIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIP 103
Query: 234 TDNNVHEGKAYEYRVSAVN--------------AAGTEKPKIS---LDALIGKRIKEFVT 276
+ + V + A G P I + + ++
Sbjct: 104 IPERTTKPYPADIVVQFKDVYALMGQNVTLECFALGNPVPDIRWRKVLEPM--PSTAEIS 161
Query: 277 STTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVV 314
++ A L I N +D GIY+ EA+N G D + V
Sbjct: 162 TSGAVLKIFNIQLEDEGIYECEAENIRGKDKHQARIYV 199
|
| >2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104 | Back alignment and structure |
|---|
Score = 60.1 bits (146), Expect = 1e-11
Identities = 25/111 (22%), Positives = 41/111 (36%), Gaps = 8/111 (7%)
Query: 346 GGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFS-GRPKPTPIWTVNGDEVSPDGRIKF 404
G + +G IT L + M VL GE + S +WTV G V R +
Sbjct: 1 GSSGSSGHVGITKRL--KTMEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQA 58
Query: 405 ETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQG 455
+ I + A +D+G +V ++ + V ++ P G
Sbjct: 59 TRQGRKYILVVREA-APSDAGEVVF----SVRGLTSKASLIVRERSGPSSG 104
|
| >2ed9_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 124 | Back alignment and structure |
|---|
Score = 60.4 bits (147), Expect = 2e-11
Identities = 24/93 (25%), Positives = 36/93 (38%), Gaps = 3/93 (3%)
Query: 12 DEP-GKPTDLEATDWDKDHVDLQWTPPISDGGS-PITGYVVEMKDKTGNWEKAVVVPAGE 69
D P P ++ + + + W PP S + ITGY + + KT + +
Sbjct: 26 DVPSAPPQNVSLEVVNSRSIKVSWLPPPSGTQNGFITGYKIRHR-KTTRRGEMETLEPNN 84
Query: 70 TSCTVPGLIEGETYQFQVRAVNAAGPGEASKPT 102
GL +G Y FQV A+ G G S
Sbjct: 85 LWYLFTGLEKGSQYSFQVSAMTVNGTGPPSNWY 117
|
| >2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 99 | Back alignment and structure |
|---|
Score = 59.6 bits (145), Expect = 2e-11
Identities = 24/94 (25%), Positives = 38/94 (40%), Gaps = 6/94 (6%)
Query: 353 APKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTI 412
AP +S L +D V+ G++F + G P P W +NG + + +
Sbjct: 11 APSFSSVL--KDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARS--TCEAGVAEL 66
Query: 413 YRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYV 446
+ + D G+YT N +G S S V V
Sbjct: 67 HIQDA--LPEDHGTYTCLAENALGQVSCSAWVTV 98
|
| >3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A Length = 100 | Back alignment and structure |
|---|
Score = 59.4 bits (144), Expect = 2e-11
Identities = 28/101 (27%), Positives = 39/101 (38%), Gaps = 10/101 (9%)
Query: 353 APKITSDLSI--RDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQ 410
AP T+ + R V A P G P PT W NG E + RI NQ
Sbjct: 4 APYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQ 63
Query: 411 ----TIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVV 447
+ + +D G+YT + N GS + + + VV
Sbjct: 64 HWSLIM----ESVVPSDKGNYTCVVENEYGSINHTYHLDVV 100
|
| >2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 115 | Back alignment and structure |
|---|
Score = 60.1 bits (146), Expect = 2e-11
Identities = 19/99 (19%), Positives = 29/99 (29%), Gaps = 6/99 (6%)
Query: 353 APKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTI 412
I DL D+ V G T S W ++ + + + +
Sbjct: 13 RVHIIEDL--EDVDVQEGSSATFRCRISPANYEPVHWFLDKTPLHANELNEIDAQPGGYH 70
Query: 413 YRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPS 451
DSG+ G AS + V +KPS
Sbjct: 71 VLTLRQLALKDSGTIYF----EAGDQRASAALRVTEKPS 105
|
| >2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone receptor/immune system complex; 3.80A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1 PDB: 3loh_E Length = 897 | Back alignment and structure |
|---|
Score = 65.3 bits (158), Expect = 2e-11
Identities = 24/107 (22%), Positives = 37/107 (34%), Gaps = 9/107 (8%)
Query: 14 PGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVV---VPAGET 70
+ ++ + V L W P G I Y V + A E
Sbjct: 793 DDIVGPVTHEIFENNVVHLMWQEPKEPNG-LIVLYEVSYRRYGDEELHLCDTRKHFALER 851
Query: 71 SCTVPGLIEGETYQFQVRAVNAAGPGEASKP----TAPIVAKPKNLA 113
C + GL G Y ++RA + AG G ++P + P N+A
Sbjct: 852 GCRLRGLSPG-NYSVRIRATSLAGNGSWTEPTYFYVTDYLDVPSNIA 897
|
| >2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone receptor/immune system complex; 3.80A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1 PDB: 3loh_E Length = 897 | Back alignment and structure |
|---|
Score = 58.4 bits (140), Expect = 4e-09
Identities = 36/411 (8%), Positives = 84/411 (20%), Gaps = 114/411 (27%)
Query: 8 KNPFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDK------------ 55
+ + D + L+W P + G+++ K+
Sbjct: 463 GDQASCENELLKFSYIRTSFDKILLRWEPYWPPDFRDLLGFMLFYKEAPYQNVTEFDGQD 522
Query: 56 ---TGNWEKAVV---------VPAGETSCTVPGLIEGETYQFQVRAVNAAGPGEAS---- 99
+ +W + + GL Y V+ + +
Sbjct: 523 ACGSNSWTVVDIDPPLRSNDPKSQNHPGWLMRGLKPWTQYAIFVKTLVTFSDERRTYGAK 582
Query: 100 -----------KPTAP--IVAKPKN--------LAPRIDRSTLNDVKIKAGQSFSFDVKE 138
P+ P ++ + P + + +
Sbjct: 583 SDIIYVQTDATNPSVPLDPISVSNSSSQIILKWKPPSDPNGNITHYLVFWERQAEDSELF 642
Query: 139 FRELSYTKSPLR----ALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTTKS 194
+ L + + ++ + S + +
Sbjct: 643 ELDYCLKGLKLPSRTWSPPFESEDSQKHNQSEYE-----DSAGECCSCPKTDSQILKELE 697
Query: 195 ETVLDIPF------------CSRSDTGHYSLTLEN-NLGTATASAHVTGTEFTDNNVHEG 241
E+ F SR + N V + +
Sbjct: 698 ESSFRKTFEDYLHNVVFVPRPSRKRRSLGDVGNAGNNEEHRPFEKVVNKESLVISGLRHF 757
Query: 242 KAYEYRVSAVNAAGTEKPKISLDALIGKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKN 301
Y + A N E+ + +V++ T
Sbjct: 758 TGYRIELQACNQDTPEER---------CSVAAYVSART---------------------- 786
Query: 302 DYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITG 352
+ +K GP+ + V + W+ P + G I
Sbjct: 787 -----------MPEAKADDIVGPVTHEIFENNVVHLMWQEPKEPNG-LIVL 825
|
| >2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone receptor/immune system complex; 3.80A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1 PDB: 3loh_E Length = 897 | Back alignment and structure |
|---|
Score = 50.3 bits (119), Expect = 1e-06
Identities = 36/257 (14%), Positives = 58/257 (22%), Gaps = 70/257 (27%)
Query: 316 SKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITG----------------------- 352
+ P P PI + + + + WKPP D G IT
Sbjct: 593 TNPSVPLDPI-SVSNSSSQIILKWKPPSDPNG-NITHYLVFWERQAEDSELFELDYCLKG 650
Query: 353 --APKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDG-RIKFETSEN 409
P T + + E+ R FE +
Sbjct: 651 LKLPSRTWSPPFESEDSQKHNQSEYEDSAGECCSCPKTDSQILKELEESSFRKTFEDYLH 710
Query: 410 QTIYRNKSAKRATDSG--------------------------------SYTIQL--VNTV 435
++ + +++ G Y I+L N
Sbjct: 711 NVVFVPRPSRKRRSLGDVGNAGNNEEHRPFEKVVNKESLVISGLRHFTGYRIELQACNQD 770
Query: 436 GS---DSASCKVYVVDKPSPPQ----GPLDVSDITPESCSLSWKPPLDDGGSPITNYVVE 488
S + V P GP+ L W+ P + G I Y V
Sbjct: 771 TPEERCSVAAYVSARTMPEAKADDIVGPVTHEIFENNVVHLMWQEPKEPNG-LIVLYEVS 829
Query: 489 KYESATGVSDLFISKSE 505
L ++
Sbjct: 830 YRRYGDEELHLCDTRKH 846
|
| >2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone receptor/immune system complex; 3.80A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1 PDB: 3loh_E Length = 897 | Back alignment and structure |
|---|
Score = 48.8 bits (115), Expect = 3e-06
Identities = 15/119 (12%), Positives = 34/119 (28%), Gaps = 6/119 (5%)
Query: 5 VLIKNPFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVV 64
+ ++ P P D + + L+W PP G IT Y+V + + +
Sbjct: 586 IYVQTDATNPSVPLDPISVSNSSSQIILKWKPPSDPNG-NITHYLVFWERQAED-----S 639
Query: 65 VPAGETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAPRIDRSTLND 123
C + T+ + ++ ++ + L +
Sbjct: 640 ELFELDYCLKGLKLPSRTWSPPFESEDSQKHNQSEYEDSAGECCSCPKTDSQILKELEE 698
|
| >2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone receptor/immune system complex; 3.80A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1 PDB: 3loh_E Length = 897 | Back alignment and structure |
|---|
Score = 48.8 bits (115), Expect = 3e-06
Identities = 35/181 (19%), Positives = 57/181 (31%), Gaps = 27/181 (14%)
Query: 317 KPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTIT 376
Y + + + + W+P + G + +T
Sbjct: 467 SCENELLKFSYIRTSFDKILLRWEPYWPPDFRDLLG-------FMLFYKEAPYQN---VT 516
Query: 377 VPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQL--VNT 434
+ WTV ++ P R S+N + + K T Y I + + T
Sbjct: 517 EFDGQDACGSNSWTV--VDIDPPLRSNDPKSQNHPGWLMRGLKPWT---QYAIFVKTLVT 571
Query: 435 VGSDSA-----SCKVYVV---DKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYV 486
+ S +YV PS P P+ + L WKPP D G IT+Y+
Sbjct: 572 FSDERRTYGAKSDIIYVQTDATNPSVPLDPI-SVSNSSSQIILKWKPPSDPNG-NITHYL 629
Query: 487 V 487
V
Sbjct: 630 V 630
|
| >1cd9_B G-CSF-R, protein (G-CSF receptor); class1 cytokine, hematopoietic receptor, signal transduction cytokine; HET: NAG; 2.80A {Mus musculus} SCOP: b.1.2.1 b.1.2.1 PDB: 1pgr_B 1cto_A 1gcf_A Length = 215 | Back alignment and structure |
|---|
Score = 62.5 bits (151), Expect = 2e-11
Identities = 19/112 (16%), Positives = 37/112 (33%), Gaps = 1/112 (0%)
Query: 3 HSVLIKNPFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYV-VEMKDKTGNWEK 61
V+ P + + L W P + + + K NW
Sbjct: 104 MDVVKLEPPMLQALDIGPDVVSHQPGCLWLSWKPWKPSEYMEQECELRYQPQLKGANWTL 163
Query: 62 AVVVPAGETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLA 113
+P+ + + GL + Y Q+R + ++ PG S + + +P A
Sbjct: 164 VFHLPSSKDQFELCGLHQAPVYTLQMRCIRSSLPGFWSPWSPGLQLRPTMKA 215
|
| >1cd9_B G-CSF-R, protein (G-CSF receptor); class1 cytokine, hematopoietic receptor, signal transduction cytokine; HET: NAG; 2.80A {Mus musculus} SCOP: b.1.2.1 b.1.2.1 PDB: 1pgr_B 1cto_A 1gcf_A Length = 215 | Back alignment and structure |
|---|
Score = 48.3 bits (114), Expect = 1e-06
Identities = 19/111 (17%), Positives = 40/111 (36%), Gaps = 9/111 (8%)
Query: 14 PGKPTDLEA-TDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVVVP-----A 67
P P++L + + QW P + P + + + + + +P
Sbjct: 5 PASPSNLSCLMHLTTNSLVCQWEPG-PETHLPTSFILKSFRSRADCQYQGDTIPDCVAKK 63
Query: 68 GETSCTVP--GLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAPRI 116
+ +C++P L+ + V+A N G E+ K + K P +
Sbjct: 64 RQNNCSIPRKNLLLYQYMAIWVQAENMLGSSESPKLCLDPMDVVKLEPPML 114
|
| >1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209 | Back alignment and structure |
|---|
Score = 61.9 bits (150), Expect = 3e-11
Identities = 29/201 (14%), Positives = 59/201 (29%), Gaps = 47/201 (23%)
Query: 255 GTEKPKISLDALIGKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDM--ADIEV 312
G + + I ++ VT + K+ R+D+G Y + G +++
Sbjct: 43 GDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKL 102
Query: 313 VVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEE 372
+V+ P PT + G
Sbjct: 103 IVLVPPSKPTVN--------------------------------------IPSSATIGNR 124
Query: 373 FTIT-VPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAK------RATDSG 425
+T G P W +G + + + S + + + + A+D+G
Sbjct: 125 AVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTG 184
Query: 426 SYTIQLVNTVGSDSASCKVYV 446
Y+ + N G+ S V +
Sbjct: 185 EYSCEARNGYGTPMTSNAVRM 205
|
| >1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209 | Back alignment and structure |
|---|
Score = 45.0 bits (106), Expect = 1e-05
Identities = 28/174 (16%), Positives = 42/174 (24%), Gaps = 27/174 (15%)
Query: 162 WVKLSEPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGT 221
W N R T + +R DTG Y+ + G
Sbjct: 38 WKFDQGDTTRLVCYNNKITASYEDRVTF----LPTGITFKSVTREDTGTYTCMVSEEGGN 93
Query: 222 ATASAHVT---------GTEFTDNNVHEGKAYEYRVSAVNAAGTEKPKIS---------- 262
+ V T ++ G S G+ + +
Sbjct: 94 SYGEVKVKLIVLVPPSKPTVNIPSSATIGNRAVLTCSE--QDGSPPSEYTWFKDGIVMPT 151
Query: 263 --LDALIGKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVV 314
+ TT L D+G Y EA+N YG M V +
Sbjct: 152 NPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRM 205
|
| >1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209 | Back alignment and structure |
|---|
Score = 44.2 bits (104), Expect = 3e-05
Identities = 19/119 (15%), Positives = 39/119 (32%), Gaps = 11/119 (9%)
Query: 351 TGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQ 410
G+ + S S ++ + ++ +SG P W + + + + + +
Sbjct: 2 MGSVTVHS--SEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASY 59
Query: 411 TIYRNKSAK-------RATDSGSYTIQLVNTVGSDSASCKVY--VVDKPSPPQGPLDVS 460
D+G+YT + G+ KV V+ PS P + S
Sbjct: 60 EDRVTFLPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVLVPPSKPTVNIPSS 118
|
| >2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens} Length = 97 | Back alignment and structure |
|---|
Score = 58.5 bits (142), Expect = 4e-11
Identities = 12/98 (12%), Positives = 30/98 (30%), Gaps = 10/98 (10%)
Query: 353 APKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPI-WTVNGDEVSPDGRIKFETSENQ- 410
++ + G + T + W ++ + + +
Sbjct: 1 GAMVSGQI--MHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYEDGVA 58
Query: 411 --TIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYV 446
+ D G+Y ++VN G DS+ +++V
Sbjct: 59 ILYVKD----ITKLDDGTYRCKVVNDYGEDSSYAELFV 92
|
| >2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens} Length = 97 | Back alignment and structure |
|---|
Score = 39.2 bits (92), Expect = 2e-04
Identities = 13/47 (27%), Positives = 23/47 (48%)
Query: 268 GKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVV 314
++ + A L +K+ + D G Y+ + NDYG D + E+ V
Sbjct: 46 SEKYEITYEDGVAILYVKDITKLDDGTYRCKVVNDYGEDSSYAELFV 92
|
| >2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388 | Back alignment and structure |
|---|
Score = 63.4 bits (154), Expect = 5e-11
Identities = 34/280 (12%), Positives = 78/280 (27%), Gaps = 57/280 (20%)
Query: 204 SRSDTGHYSLTLENNLGTA-TASAHVTG-------TEFTDNNVHEGKAYEYRVSAVNAAG 255
Y+ N G+ + HV + +V G + + +
Sbjct: 73 QEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNKEHVIRGNSAVIKCLIPSFVA 132
Query: 256 TEKPKIS-------LDALIGKRIKEFVTSTTASLNIKNSVRKDS-GIYKIEAKNDYGIDM 307
+S + +++ + L+I+ +D Y+ K+ +
Sbjct: 133 DFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGET 192
Query: 308 ---ADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRD 364
A +V+++P + P V +
Sbjct: 193 RLSATKGRLVITEPISSSAPRTPALVQ-------------------------------KP 221
Query: 365 MTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAK----R 420
+ ++ ++ P G P P+ W + + + ++ + +
Sbjct: 222 LELMVAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVL---NDRVKQVSGTLIIKDAV 278
Query: 421 ATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQGPLDVS 460
DSG Y + N+VG +S + V S P +
Sbjct: 279 VEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQT 318
|
| >2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388 | Back alignment and structure |
|---|
Score = 57.3 bits (138), Expect = 5e-09
Identities = 34/202 (16%), Positives = 59/202 (29%), Gaps = 58/202 (28%)
Query: 253 AAGTEKPKIS-------LDALIGKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGI 305
A G P + + V + +L IK++V +DSG Y N G
Sbjct: 236 AQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGG 295
Query: 306 DMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDM 365
+ + + V + + P
Sbjct: 296 ESVETVLTVTAPL--------SAKIDPP------------------------------TQ 317
Query: 366 TVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSP-DGRIKFETSENQTIYRNKSAKRATDS 424
TV G T ++G P T W +G + + ++ +S K+ D
Sbjct: 318 TVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSESVLRI-----------ESVKKE-DK 365
Query: 425 GSYTIQLVNTVGSDSASCKVYV 446
G Y + N S AS ++ +
Sbjct: 366 GMYQCFVRNDRESAEASAELKL 387
|
| >2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388 | Back alignment and structure |
|---|
Score = 48.4 bits (115), Expect = 3e-06
Identities = 41/247 (16%), Positives = 72/247 (29%), Gaps = 56/247 (22%)
Query: 85 FQVRAVNAAGPGEASKPTAPIV---AKPKNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRE 141
+Q R + T + + APR +++ + S
Sbjct: 180 YQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPLELMVAHTISLLCP---- 235
Query: 142 LSYTKSPLRALG-----VRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTTKSET 196
A G R W K E + Q + R +
Sbjct: 236 ---------AQGFPAPSFR------WYKFIEG------TTRKQAVVLNDR----VKQVSG 270
Query: 197 VLDIPFCSRSDTGHYSLTLENNLGTATASAHVTGTE---FT----DNNVHEGKAYEYRVS 249
L I D+G Y + N++G + +T T V G+ +
Sbjct: 271 TLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQ 330
Query: 250 AVNAAGTEKPKIS--LDALIGKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDM 307
G +S D GK I + + L I++ ++D G+Y+ +ND
Sbjct: 331 Y---TGNPIKTVSWMKD---GKAI----GHSESVLRIESVKKEDKGMYQCFVRNDRESAE 380
Query: 308 ADIEVVV 314
A E+ +
Sbjct: 381 ASAELKL 387
|
| >2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388 | Back alignment and structure |
|---|
Score = 42.6 bits (100), Expect = 2e-04
Identities = 21/127 (16%), Positives = 33/127 (25%), Gaps = 6/127 (4%)
Query: 353 APKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTI 412
P + + + I SG P P IW + D + S + +
Sbjct: 3 GPVFLKEPT-NRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKL 61
Query: 413 Y----RNKSAKRATDSGSYTIQLVNTVGS-DSASCKVYVVDKPSPPQGPLDVSDITPESC 467
R + ++ + Y N GS S V V I S
Sbjct: 62 VFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNKEHVIRGNSA 121
Query: 468 SLSWKPP 474
+ P
Sbjct: 122 VIKCLIP 128
|
| >3n1f_C Cell adhesion molecule-related/DOWN-regulated BY; binding sites, calcium, cell adhesion molecules, cell cycle cell LINE, conserved sequence; 1.60A {Homo sapiens} PDB: 3d1m_C 3n1q_C 3n1m_C 3n1g_C 3n1p_C Length = 102 | Back alignment and structure |
|---|
Score = 58.2 bits (141), Expect = 7e-11
Identities = 18/90 (20%), Positives = 35/90 (38%), Gaps = 6/90 (6%)
Query: 17 PTDLEATDWDKDHVDLQWT-PPISDGGSPITGYVVEMK----DKTGNWEKAVVVPAGETS 71
P + L+WT P S+ +PI G+ + + D ++++ VV +
Sbjct: 8 PHIAYTEAVSDTQIMLKWTYIPSSNNNTPIQGFYIYYRPTDSDNDSDYKR-DVVEGSKQW 66
Query: 72 CTVPGLIEGETYQFQVRAVNAAGPGEASKP 101
+ L +Y +++ N G E S
Sbjct: 67 HMIGHLQPETSYDIKMQCFNEGGESEFSNV 96
|
| >1bqu_A Protein (GP130); cytokine receptor, glycoprotein 130, interleukine 6 R beta subunit, signaling protein; 2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1pvh_A 1bj8_A Length = 215 | Back alignment and structure |
|---|
Score = 60.4 bits (146), Expect = 1e-10
Identities = 22/106 (20%), Positives = 36/106 (33%), Gaps = 6/106 (5%)
Query: 14 PGKPTDLEAT--DWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAV---VVPAG 68
P P +L + + L WT P S I Y ++ + K + + +
Sbjct: 104 PNPPHNLSVINSEELSSILKLTWTNP-SIKSVIILKYNIQYRTKDASTWSQIPPEDTAST 162
Query: 69 ETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAP 114
+S TV L Y F++R + G G S + P
Sbjct: 163 RSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASGITYEDRP 208
|
| >1bqu_A Protein (GP130); cytokine receptor, glycoprotein 130, interleukine 6 R beta subunit, signaling protein; 2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1pvh_A 1bj8_A Length = 215 | Back alignment and structure |
|---|
Score = 54.6 bits (131), Expect = 9e-09
Identities = 21/104 (20%), Positives = 34/104 (32%), Gaps = 3/104 (2%)
Query: 14 PGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVVVPAGETSCT 73
P KP +L + + +W + T + ++ + T + TSCT
Sbjct: 8 PEKPKNLSCIVNEGKKMRCEWDGG-RETHLE-TNFTLKSEWATHKFADCKAKRDTPTSCT 65
Query: 74 VP-GLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAPRI 116
V + + V A NA G + V K K P
Sbjct: 66 VDYSTVYFVNIEVWVEAENALGKVTSDHINFDPVYKVKPNPPHN 109
|
| >1eer_B Epobp, erythropoietin receptor; signal transduction, hematopoietic cytokine, cytokine receptor class 1, complex (cytokine/receptor); 1.90A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1cn4_A 2jix_B 1eba_A* 1ern_A 1ebp_A Length = 227 | Back alignment and structure |
|---|
Score = 60.5 bits (146), Expect = 1e-10
Identities = 33/118 (27%), Positives = 45/118 (38%), Gaps = 5/118 (4%)
Query: 2 DHSVLIKNPFDEPGKPTDLEATDWD-KDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWE 60
H V+ N P L A D HV L+W PP + Y V++ G
Sbjct: 110 YHRVIHINEVVLLDAPVGLVARLADESGHVVLRWLPPPETPMTSHIRYEVDVSAGQGAGS 169
Query: 61 -KAVVVPAGETSCTVPGLIEGETYQFQVRAVNAAGP--GEASKPTAPIVAK-PKNLAP 114
+ V + G T C + L Y F VRA A G S+ + P+ P +L P
Sbjct: 170 VQRVEILEGRTECVLSNLRGRTRYTFAVRARMAEPSFGGFWSEWSEPVSLLTPSDLDP 227
|
| >2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99 | Back alignment and structure |
|---|
Score = 57.0 bits (138), Expect = 1e-10
Identities = 18/101 (17%), Positives = 34/101 (33%), Gaps = 8/101 (7%)
Query: 353 APKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTI 412
+ ++ V G+ + + W +G +++ R + T E +
Sbjct: 3 SGSSGVEV--ESFLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLAESNRTRI-TGEEVEV 58
Query: 413 YRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPP 453
+ + A DSG Y + GSD+ V V D
Sbjct: 59 ---QDSVPA-DSGLYACVTSSPSGSDTTYFSVNVSDALPSG 95
|
| >2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99 | Back alignment and structure |
|---|
Score = 38.5 bits (90), Expect = 5e-04
Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Query: 281 SLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKP--GPPTG 323
+ +++SV DSG+Y + G D V V GP +G
Sbjct: 55 EVEVQDSVPADSGLYACVTSSPSGSDTTYFSVNVSDALPSGPSSG 99
|
| >2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99 | Back alignment and structure |
|---|
Score = 38.1 bits (89), Expect = 8e-04
Identities = 10/59 (16%), Positives = 22/59 (37%), Gaps = 4/59 (6%)
Query: 174 WSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVTGTE 232
W +G R T + +++ +D+G Y+ + G+ T V ++
Sbjct: 36 WLRDGVQLAESNR----TRITGEEVEVQDSVPADSGLYACVTSSPSGSDTTYFSVNVSD 90
|
| >2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus} Length = 106 | Back alignment and structure |
|---|
Score = 57.4 bits (139), Expect = 1e-10
Identities = 28/105 (26%), Positives = 35/105 (33%), Gaps = 4/105 (3%)
Query: 351 TGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQ 410
+G ++ D+ D+TV A E+ S K T W NG EV P RI
Sbjct: 6 SGQLEVLQDI--ADLTVKAAEQAVFKCEVSD-EKVTGKWYKNGVEVRPSKRITISHVGRF 62
Query: 411 TIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQG 455
R D G YT S SA + P G
Sbjct: 63 HKLVIDDV-RPEDEGDYTFVPDGYALSLSAKLNFLEIKVSGPSSG 106
|
| >1k85_A Chitinase A1; fibronectin type III domain, chitin binding domain, carbohydrase, horizontal gene transfer, hydrolase; NMR {Bacillus circulans} SCOP: b.1.2.1 Length = 88 | Back alignment and structure |
|---|
Score = 56.5 bits (137), Expect = 2e-10
Identities = 27/95 (28%), Positives = 40/95 (42%), Gaps = 11/95 (11%)
Query: 14 PGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVVVPAGETSCT 73
P PT+L +T + L WT + G +TGY V A+ T+ T
Sbjct: 4 PTAPTNLASTAQTTSSITLSWTASTDNVG--VTGYDVYNGT-------ALATTVTGTTAT 54
Query: 74 VPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAK 108
+ GL +Y F V+A +AA G S + + K
Sbjct: 55 ISGLAADTSYTFTVKAKDAA--GNVSAASNAVSVK 87
|
| >3mpc_A FN3-like protein; fibronectin, FN(III), unknown function; 1.60A {Clostridium thermocellum} Length = 103 | Back alignment and structure |
|---|
Score = 57.0 bits (138), Expect = 2e-10
Identities = 20/87 (22%), Positives = 29/87 (33%), Gaps = 6/87 (6%)
Query: 14 PGKPTDLEATDWDKDH-VDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVVVPAGETSC 72
P PT L A + +L W Y V+ K+G + T+
Sbjct: 5 PAFPTGLSAVLDSSGNTANLTWNAA-----PGANSYNVKRSTKSGGPYTTIATNITSTNY 59
Query: 73 TVPGLIEGETYQFQVRAVNAAGPGEAS 99
T G+ G Y + V AV+ S
Sbjct: 60 TDTGVATGTKYYYVVSAVSNGVETLNS 86
|
| >3mpc_A FN3-like protein; fibronectin, FN(III), unknown function; 1.60A {Clostridium thermocellum} Length = 103 | Back alignment and structure |
|---|
Score = 40.9 bits (96), Expect = 9e-05
Identities = 13/37 (35%), Positives = 18/37 (48%)
Query: 220 GTATASAHVTGTEFTDNNVHEGKAYEYRVSAVNAAGT 256
T + ++T T +TD V G Y Y VSAV+
Sbjct: 46 PYTTIATNITSTNYTDTGVATGTKYYYVVSAVSNGVE 82
|
| >2ee2_A Contactin-1; neural cell surface protein F3, glycoprotein GP135, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 119 | Back alignment and structure |
|---|
Score = 57.4 bits (139), Expect = 2e-10
Identities = 19/94 (20%), Positives = 32/94 (34%), Gaps = 6/94 (6%)
Query: 12 DEPGK-PTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVE--MKDKTGNWEKAVVVPAG 68
D P + PT++ + + W + + Y + V V +
Sbjct: 16 DAPSEAPTEVGVKVLSSSEISVHWEHVLEK---IVESYQIRYWAAHDKEEAANRVQVTSQ 72
Query: 69 ETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPT 102
E S + L+ Y +V A N+AG G S
Sbjct: 73 EYSARLENLLPDTQYFIEVGACNSAGCGPPSDMI 106
|
| >1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212 | Back alignment and structure |
|---|
Score = 59.6 bits (144), Expect = 2e-10
Identities = 33/206 (16%), Positives = 57/206 (27%), Gaps = 48/206 (23%)
Query: 255 GTEKPKISLDALIGKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDM--ADIEV 312
G+ + ++ I + VT +++ + + RKD+G Y + G + I +
Sbjct: 40 GSTTALVCYNSQITAPYADRVTFSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHL 99
Query: 313 VVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEE 372
V+ P PT +V G
Sbjct: 100 TVLVPPSKPTIS--------------------------------------VPSSVTIGNR 121
Query: 373 FTIT-VPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNK-------SAKRATDS 424
+T G P W +G + K N + + A DS
Sbjct: 122 AVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDS 181
Query: 425 GSYTIQLVNTVGSDSASCKVYVVDKP 450
G Y Q N G+ S ++
Sbjct: 182 GEYYCQAQNGYGTAMRSEAAHMDAVE 207
|
| >1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212 | Back alignment and structure |
|---|
Score = 45.7 bits (108), Expect = 1e-05
Identities = 25/159 (15%), Positives = 42/159 (26%), Gaps = 24/159 (15%)
Query: 182 QIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVT---------GTE 232
QI + T S + + +R D G Y+ + G + T
Sbjct: 51 QITAPYADRVTFSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVLVPPSKPTI 110
Query: 233 FTDNNVHEGKAYEYRVSAVNAAGTEKPKIS-------------LDALIGKRIKEFVTSTT 279
++V G S G+ + S + +
Sbjct: 111 SVPSSVTIGNRAVLTCSE--HDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKS 168
Query: 280 ASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKP 318
L DSG Y +A+N YG M + +
Sbjct: 169 GDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMDAVE 207
|
| >1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212 | Back alignment and structure |
|---|
Score = 41.5 bits (97), Expect = 3e-04
Identities = 19/116 (16%), Positives = 36/116 (31%), Gaps = 11/116 (9%)
Query: 354 PKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIY 413
+ + + D+ V E +T +SG P W + + +
Sbjct: 2 GSVYT--AQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADR 59
Query: 414 RNKSAK-------RATDSGSYTIQLVNTVGSDSASCKVY--VVDKPSPPQGPLDVS 460
S+ D+G YT + G + ++ V+ PS P + S
Sbjct: 60 VTFSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVLVPPSKPTISVPSS 115
|
| >2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190 | Back alignment and structure |
|---|
Score = 59.1 bits (143), Expect = 2e-10
Identities = 34/205 (16%), Positives = 56/205 (27%), Gaps = 52/205 (25%)
Query: 252 NAAGTEKPKISL----DALIGKRIKEF-VTSTTASLNIKNSVRKDSGIYKIEAKNDYGID 306
N + + + G + ++ I +DSG Y +
Sbjct: 26 NLTSSSHTLMYSYWTKN---GVELTATRKNASNMEYRINKPRAEDSGEYHCVY-HFVSAP 81
Query: 307 MADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMT 366
A+ + V + P ITG R
Sbjct: 82 KANATIEVKAAP------------------------------DITGHK--------RSEN 103
Query: 367 VLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPD-----GRIKFETSENQTIYRNKSAKRA 421
G++ + G P P +W + V + GR EN T + +
Sbjct: 104 KNEGQDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIINKENYTELNIVNLQIT 163
Query: 422 TDSGSYTIQLVNTVGSDSASCKVYV 446
D G Y N++GS S S + V
Sbjct: 164 EDPGEYECNATNSIGSASVSTVLRV 188
|
| >2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190 | Back alignment and structure |
|---|
Score = 47.9 bits (114), Expect = 1e-06
Identities = 18/110 (16%), Positives = 33/110 (30%), Gaps = 11/110 (10%)
Query: 353 APKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTP--IWTVNGDEVSPDGRIKFETSENQ 410
P+I + + + T+ + WT NG E++ +
Sbjct: 3 EPRIVTSEE--VIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRKNASNME--- 57
Query: 411 TIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQGPLDVS 460
YR + DSG Y + V + A+ + V P +
Sbjct: 58 --YRINKPRA-EDSGEYHCV-YHFVSAPKANATIEVKAAPDITGHKRSEN 103
|
| >2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190 | Back alignment and structure |
|---|
Score = 44.1 bits (104), Expect = 3e-05
Identities = 29/169 (17%), Positives = 48/169 (28%), Gaps = 33/169 (19%)
Query: 167 EPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASA 226
+ W+ NG + S I D+G Y + + + A+A
Sbjct: 32 HTLMYSYWTKNGVELTATRK-----NASNMEYRINKPRAEDSGEYH-CVYHFVSAPKANA 85
Query: 227 HVT-------GTEFTDNNVHEGKAYEYRVSAV---NAAGTEKPKIS-------LDALIGK 269
+ N +EG+ A+ + G P+ + I
Sbjct: 86 TIEVKAAPDITGHKRSENKNEGQ------DAMMYCKSVGYPHPEWMWRKKENGVFEEISN 139
Query: 270 RIKEFVTS---TTASLNIKN-SVRKDSGIYKIEAKNDYGIDMADIEVVV 314
F LNI N + +D G Y+ A N G + V
Sbjct: 140 SSGRFFIINKENYTELNIVNLQITEDPGEYECNATNSIGSASVSTVLRV 188
|
| >1i1r_A GP130, interleukin-6 receptor beta chain; cytokine/receptor complex, GP130; 2.40A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1p9m_A Length = 303 | Back alignment and structure |
|---|
Score = 60.6 bits (146), Expect = 3e-10
Identities = 22/102 (21%), Positives = 36/102 (35%), Gaps = 6/102 (5%)
Query: 14 PGKPTDL--EATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDK-TGNWEKAVV--VPAG 68
P P +L ++ + L WT P S I Y ++ + K W + +
Sbjct: 200 PNPPHNLSVINSEELSSILKLTWTNP-SIKSVIILKYNIQYRTKDASTWSQIPPEDTAST 258
Query: 69 ETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPK 110
+S TV L Y F++R + G G S +
Sbjct: 259 RSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASGITY 300
|
| >1i1r_A GP130, interleukin-6 receptor beta chain; cytokine/receptor complex, GP130; 2.40A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1p9m_A Length = 303 | Back alignment and structure |
|---|
Score = 47.9 bits (113), Expect = 3e-06
Identities = 21/104 (20%), Positives = 33/104 (31%), Gaps = 3/104 (2%)
Query: 14 PGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVVVPAGETSCT 73
P KP +L + + +W T + ++ + T + TSCT
Sbjct: 104 PEKPKNLSCIVNEGKKMRCEWDGGRETHLE--TNFTLKSEWATHKFADCKAKRDTPTSCT 161
Query: 74 VP-GLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAPRI 116
V + + V A NA G + V K K P
Sbjct: 162 VDYSTVYFVNIEVWVEAENALGKVTSDHINFDPVYKVKPNPPHN 205
|
| >1i1r_A GP130, interleukin-6 receptor beta chain; cytokine/receptor complex, GP130; 2.40A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1p9m_A Length = 303 | Back alignment and structure |
|---|
Score = 43.3 bits (101), Expect = 1e-04
Identities = 25/257 (9%), Positives = 64/257 (24%), Gaps = 49/257 (19%)
Query: 263 LDALIGKRIKEFVTSTTASLNIKNSVRKDSGIY--KIEAKNDYGIDMADIEVVVVSKPGP 320
+ + + + + TAS + + I ++ I ++ P
Sbjct: 47 TNHFTIPKEQYTIINRTASSVTFTDIASLNIQLTCNILTFGQLEQNVYGITIISGLPPEK 106
Query: 321 PTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFS 380
P + + + W + FT+ ++
Sbjct: 107 PKN-LSCIVNEGKKMRCEWDGGRETHLE----------------------TNFTLKSEWA 143
Query: 381 GRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQL--VNTVGSD 438
K + + + S + + + N +G
Sbjct: 144 THKFA---------------DCKAKRDTPTSCTVDYSTVYFVN---IEVWVEAENALGKV 185
Query: 439 SASCKVYVVD---KPSPPQGP-LDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESAT 494
++ + KP+PP + S+ L+W P + + + + A+
Sbjct: 186 TSDHINFDPVYKVKPNPPHNLSVINSEELSSILKLTWTNPSIKSVIILKYNIQYRTKDAS 245
Query: 495 GVSDLFISKSEVKTGSL 511
S + + S
Sbjct: 246 TWSQIPPEDTASTRSSF 262
|
| >2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A Length = 103 | Back alignment and structure |
|---|
Score = 56.6 bits (137), Expect = 3e-10
Identities = 23/108 (21%), Positives = 38/108 (35%), Gaps = 9/108 (8%)
Query: 347 GTPITGAP-KITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFE 405
G+ + P + L +D+ VL G T+ S P W + + P +
Sbjct: 1 GSSGSSGPVRFQEAL--KDLEVLEGGAATLRCVLSSVAAPV-KWCYGNNVLRPGDKYSLR 57
Query: 406 TSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPP 453
++ R DSG Y+ + G + S + V PS P
Sbjct: 58 QEGAMLELVVRNL-RPQDSGRYSC----SFGDQTTSATLTVTALPSGP 100
|
| >2d9q_B Granulocyte colony-stimulating factor receptor; cytokine, ligand-receptor complex, signaling protein-cytokin; HET: NAG; 2.80A {Homo sapiens} SCOP: b.1.1.3 b.1.2.1 b.1.2.1 Length = 313 | Back alignment and structure |
|---|
Score = 60.7 bits (146), Expect = 3e-10
Identities = 20/113 (17%), Positives = 33/113 (29%), Gaps = 3/113 (2%)
Query: 4 SVLIKNPFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTG--NWEK 61
V+ P EA + L W P + K + G +W
Sbjct: 199 DVVKLEPPMLRTMDPSPEAAPPQAGCLQLSWEPWQPGLHINQK-CELRHKPQRGEASWAL 257
Query: 62 AVVVPAGETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAP 114
+P + GL+ Y Q+R + PG S + + + A
Sbjct: 258 VGPLPLEALQYELCGLLPATAYTLQIRCIRWPLPGHWSDWSPSLELRTTERAA 310
|
| >2d9q_B Granulocyte colony-stimulating factor receptor; cytokine, ligand-receptor complex, signaling protein-cytokin; HET: NAG; 2.80A {Homo sapiens} SCOP: b.1.1.3 b.1.2.1 b.1.2.1 Length = 313 | Back alignment and structure |
|---|
Score = 42.2 bits (98), Expect = 3e-04
Identities = 19/117 (16%), Positives = 40/117 (34%), Gaps = 9/117 (7%)
Query: 14 PGKPTDLEA-TDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVVVP-----A 67
P P +L + + QW P + P + + K + + +
Sbjct: 99 PAIPHNLSCLMNLTTSSLICQWEPG-PETHLPTSFTLKSFKSRGNCQTQGDSILDCVPKD 157
Query: 68 GETSCTVP--GLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAPRIDRSTLN 122
G++ C++P L+ + V+A NA G + + + K P + +
Sbjct: 158 GQSHCSIPRKHLLLYQNMGIWVQAENALGTSMSPQLCLDPMDVVKLEPPMLRTMDPS 214
|
| >2gys_A Cytokine receptor common beta chain; dimer of interlocking chains of fibronectin-III domains, FOU fibronectin-III domains PER chain; HET: NAG FUC BMA NDG; 2.70A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1gh7_A* 3cxe_A* 1egj_A* 1c8p_A Length = 419 | Back alignment and structure |
|---|
Score = 61.2 bits (147), Expect = 3e-10
Identities = 24/110 (21%), Positives = 43/110 (39%), Gaps = 8/110 (7%)
Query: 2 DHSVLIKNPFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSP-----ITGYVVEMKDKT 56
+ +P +P DL+ + D+DH L W+ + S + V K
Sbjct: 97 TRLTVTLTQHVQPPEPRDLQIST-DQDHFLLTWSVALGSPQSHWLSPGDLEFEVVYKRLQ 155
Query: 57 GNWEKAVVVPAGETSCT--VPGLIEGETYQFQVRAVNAAGPGEASKPTAP 104
+WE A ++ + + T L+ TY +VR A G + +P+
Sbjct: 156 DSWEDAAILLSNTSQATLGPEHLMPSSTYVARVRTRLAPGSRLSGRPSKW 205
|
| >2gys_A Cytokine receptor common beta chain; dimer of interlocking chains of fibronectin-III domains, FOU fibronectin-III domains PER chain; HET: NAG FUC BMA NDG; 2.70A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1gh7_A* 3cxe_A* 1egj_A* 1c8p_A Length = 419 | Back alignment and structure |
|---|
Score = 52.7 bits (125), Expect = 2e-07
Identities = 17/98 (17%), Positives = 30/98 (30%), Gaps = 2/98 (2%)
Query: 1 MDHSVLIKNPFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWE 60
IK+ + P L+ T D D L+W + ++ + T W+
Sbjct: 308 RRAEKHIKSSVNIQMAPPSLQVTK-DGDSYSLRWETMKMRYEHIDHTFEIQYRKDTATWK 366
Query: 61 KAVVVPA-GETSCTVPGLIEGETYQFQVRAVNAAGPGE 97
+ S +P L Y +VR +
Sbjct: 367 DSKTETLQNAHSMALPALEPSTRYWARVRVRTSRTGYN 404
|
| >2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens} Length = 113 | Back alignment and structure |
|---|
Score = 56.6 bits (137), Expect = 3e-10
Identities = 18/102 (17%), Positives = 28/102 (27%), Gaps = 9/102 (8%)
Query: 353 APKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTI 412
K T L R+ G + S W + + R +
Sbjct: 19 PIKFTEGL--RNEEATEGATAVLRCELSKMAPVE--WWKGHETLRDGDRHSLRQDGARCE 74
Query: 413 YRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQ 454
+ + A D+G Y G + S + V PS P
Sbjct: 75 LQIRGL-VAEDAGEYLCM----CGKERTSAMLTVRAMPSGPS 111
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 60.5 bits (146), Expect = 3e-10
Identities = 31/209 (14%), Positives = 54/209 (25%), Gaps = 52/209 (24%)
Query: 252 NAAGTEKPKIS---LDALIGKRIKEFVTSTTASLNIKNSVRK-DSGIYKIEAKNDYGIDM 307
G + + + + + L + N + A+ND G
Sbjct: 181 QVEGRGLEQAGWILTELEQSATVMKSGGLPSLGLTLANVTSDLNRKNVTCWAENDVGRAE 240
Query: 308 ADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTV 367
++V V P +T V + +
Sbjct: 241 VSVQVNVS----FPASVQLHTAVEMHHWCIPFS--------------------------- 269
Query: 368 LAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAK------RA 421
G+P P+ W NG ++ I E E +
Sbjct: 270 -----------VDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTH 318
Query: 422 TDSGSYTIQLVNTVGSDSASCKVYVVDKP 450
++G+YT+ N G SAS +D P
Sbjct: 319 VNNGNYTLLAANPFGQASASIMAAFMDNP 347
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 55.1 bits (132), Expect = 2e-08
Identities = 25/157 (15%), Positives = 45/157 (28%), Gaps = 13/157 (8%)
Query: 174 WSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVTGTEF 233
W + Q S + S + + + EN++G A S V +
Sbjct: 192 WILTELE-QSATVMKSGGLPSLGLTLANVTSDLNRKNVTCWAENDVGRAEVSVQVNVSFP 250
Query: 234 TDNNVHEGKAYEYRVSAVNAAGTEKPKIS---------LDALIGKRIKEFVTSTTA---S 281
+H + + G P + + I E + T
Sbjct: 251 ASVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGC 310
Query: 282 LNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKP 318
L + ++G Y + A N +G A I + P
Sbjct: 311 LRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMDNP 347
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 49.7 bits (118), Expect = 1e-06
Identities = 21/152 (13%), Positives = 41/152 (26%), Gaps = 13/152 (8%)
Query: 363 RDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRAT 422
+ +V G++ + GR W + E S N ++
Sbjct: 166 PNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPSLGLTLANVTSD--L 223
Query: 423 DSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQGPLDVSDITPESCSLSWKP--------- 473
+ + T N VG S +V V S S+ +P
Sbjct: 224 NRKNVTCWAENDVGRAEVSVQVNVSFPASVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFN 283
Query: 474 --PLDDGGSPITNYVVEKYESATGVSDLFISK 503
L++ T ++ L +++
Sbjct: 284 GSVLNETSFIFTEFLEPAANETVRHGCLRLNQ 315
|
| >2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217 | Back alignment and structure |
|---|
Score = 58.7 bits (142), Expect = 4e-10
Identities = 37/220 (16%), Positives = 60/220 (27%), Gaps = 53/220 (24%)
Query: 253 AAGTEKPKI---------SLDALIGKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDY 303
G +P I S + R++ + ++ +D G Y AKN
Sbjct: 33 VEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKKEQDGGEYWCVAKNRV 92
Query: 304 G-IDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSI 362
G + + +
Sbjct: 93 GQAVSRHASLQIAVLR-----------------------------------DDFRVEP-- 115
Query: 363 RDMTVLAGEEFTIT-VPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAK-- 419
+D V GE + P G P+PT IW +G + + F S I +
Sbjct: 116 KDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLIS 175
Query: 420 --RATDSGSYTIQLVNTVGSD-SASCKVYVVDKPSPPQGP 456
D G+Y N VG+ S+ K+ V K +
Sbjct: 176 NVEPIDEGNYKCIAQNLVGTRESSYAKLIVQVKAAAHHHH 215
|
| >2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217 | Back alignment and structure |
|---|
Score = 45.6 bits (108), Expect = 1e-05
Identities = 26/114 (22%), Positives = 40/114 (35%), Gaps = 9/114 (7%)
Query: 353 APKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQ-- 410
+P+I + D+ V E T+ G+P+PT W +G+ VS + +
Sbjct: 9 SPRIIEHPT--DLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGA 66
Query: 411 -TIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPP---QGPLDVS 460
YR K+ D G Y N VG + S + P D
Sbjct: 67 LFFYRTMQGKKEQDGGEYWCVAKNRVGQ-AVSRHASLQIAVLRDDFRVEPKDTR 119
|
| >2q7n_A Leukemia inhibitory factor receptor; cytokine cell surface receptor complex LIFR LIF, cytokine RE cytokine complex; HET: NAG FUC MAN; 4.00A {Mus musculus} Length = 488 | Back alignment and structure |
|---|
Score = 60.7 bits (146), Expect = 4e-10
Identities = 75/489 (15%), Positives = 143/489 (29%), Gaps = 84/489 (17%)
Query: 13 EPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVVVPAGETSC 72
+ DL+ T + D W P+ + ++ + + P T+
Sbjct: 3 KDDDDKDLKCTTNNMRVWDCTWPAPLGVSPGTVKDICIKDRFHS-------CHPLETTNV 55
Query: 73 TVPGLIEGETYQFQVRAVNAAG-------PGEASKPTAPIVAKPKNLAPRIDRSTLN--- 122
+P L G ++ + +N + P P + +L+ S+L
Sbjct: 56 KIPALSPG-DHEVTINYLNGFQSKFTLNEKDVSLIPETPEI---LDLSADFFTSSLLLKW 111
Query: 123 DVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQ 182
+ + A S E + L ++ AL + G + W+ +
Sbjct: 112 NDRGSALPHPSNATWEIKVLQNPRTEPVALVLLNTMLSGKDTV------QHWNWTSDLPL 165
Query: 183 IGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVTGTEFTDNNVHEGK 242
V + F + +S L+N +V D V G
Sbjct: 166 QCATHSVSIRW--HIDSPHFSGYKEWSDWS-PLKNISWIRNTETNVFPQ---DKVVLAGS 219
Query: 243 AYEYRVSAVNAAGTEKPKISLDALIGKRIKEFVTSTTASL-NIKNSVRKDSGIYKIEAKN 301
++ + T+ + + I + + + NI S + I I +
Sbjct: 220 ----NMTICCMSPTKVLSGQIGNTLRPLIHLYGQTVAIHILNIPVSENSGTNIIFITDDD 275
Query: 302 DYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSM--SWKPPVDDGGTPITGAPKITSD 359
YG VV PP P + T + + SW P G P+ T
Sbjct: 276 VYGT--------VVFAGYPPDVPQKLSCETHDLKEIICSWNPGRITGLVG----PRNTE- 322
Query: 360 LSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAK 419
+T+ SG+ +E R+ + Q I+
Sbjct: 323 -------------YTLFESISGKSAVFHRIEGLTNETY---RLGVQMHPGQEIH------ 360
Query: 420 RATDSGSYTIQLVNTVGSDSASCKVYVVD--KPSPPQGPLDVSDITPESCSLSWKPPLDD 477
++T+ N +G ++ + V + P P L V DI + SW P +
Sbjct: 361 ------NFTLTGRNPLGQAQSAVVINVTERVAPHDPTS-LKVKDINSTVVTFSWYLPGNF 413
Query: 478 GGSPITNYV 486
+ +
Sbjct: 414 TKINLLCQI 422
|
| >2q7n_A Leukemia inhibitory factor receptor; cytokine cell surface receptor complex LIFR LIF, cytokine RE cytokine complex; HET: NAG FUC MAN; 4.00A {Mus musculus} Length = 488 | Back alignment and structure |
|---|
Score = 46.1 bits (108), Expect = 2e-05
Identities = 16/93 (17%), Positives = 28/93 (30%), Gaps = 6/93 (6%)
Query: 17 PTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKA----VVVPAGETSC 72
PT L+ D + V W P + + +E+ E
Sbjct: 390 PTSLKVKDINSTVVTFSWYLPGNFTKINLL-CQIEICKANSKKEVRNATIRGAEDSTYHV 448
Query: 73 TVPGLIEGETYQFQVRAVNAAGPGEASKPTAPI 105
V L Y F+VR ++ + S+ +
Sbjct: 449 AVDKLNPYTAYTFRVRC-SSKTFWKWSRWSDEK 480
|
| >2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104 | Back alignment and structure |
|---|
Score = 55.5 bits (134), Expect = 6e-10
Identities = 21/102 (20%), Positives = 29/102 (28%), Gaps = 6/102 (5%)
Query: 354 PKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIY 413
I S +T E +T S W +G +V + + +
Sbjct: 9 VHILSPQDKVSLTFTTSERVVLTCELSR-VDFPATWYKDGQKVEESELLVVKMDGRKHRL 67
Query: 414 RNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQG 455
AK DSG + SA V V D P G
Sbjct: 68 ILPEAKVQ-DSGEFEC----RTEGVSAFFGVTVQDPSGPSSG 104
|
| >1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein, immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 1p9m_C 2arw_A Length = 325 | Back alignment and structure |
|---|
Score = 59.1 bits (142), Expect = 9e-10
Identities = 17/116 (14%), Positives = 37/116 (31%), Gaps = 3/116 (2%)
Query: 2 DHSVLIKNPFDEPGKPTDLEAT--DWDKDHVDLQWTPPIS-DGGSPITGYVVEMKDKTGN 58
+P P ++ T + + + W P S + + + + +
Sbjct: 185 KTQTFQGCGILQPDPPANITVTAVARNPRWLSVTWQDPHSWNSSFYRLRFELRYRAERSK 244
Query: 59 WEKAVVVPAGETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAP 114
+V + C + G + Q+RA G GE S+ + + P +
Sbjct: 245 TFTTWMVKDLQHHCVIHDAWSGLRHVVQLRAQEEFGQGEWSEWSPEAMGTPWTESR 300
|
| >1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein, immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 1p9m_C 2arw_A Length = 325 | Back alignment and structure |
|---|
Score = 51.4 bits (122), Expect = 3e-07
Identities = 21/127 (16%), Positives = 36/127 (28%), Gaps = 11/127 (8%)
Query: 363 RDMTVLAGEEFTITVPFSGRPKPTPI-WTVNGDEVSPDGRIKFETSENQTIYRNKSAKRA 421
+T L G+ T+T P + W + + + +
Sbjct: 14 GVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGMGRRLLL----RSVQL 69
Query: 422 TDSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSP 481
DSG+Y+ G + + + V P PQ + W P S
Sbjct: 70 HDSGNYSCY---RAGRPAGTVHLLVDVPPEEPQL-SCFRKSPLSNVVCEWGPRST--PSL 123
Query: 482 ITNYVVE 488
T V+
Sbjct: 124 TTKAVLL 130
|
| >1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein, immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 1p9m_C 2arw_A Length = 325 | Back alignment and structure |
|---|
Score = 41.0 bits (95), Expect = 6e-04
Identities = 14/110 (12%), Positives = 30/110 (27%), Gaps = 9/110 (8%)
Query: 14 PGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNW------EKAVVVPA 67
P +P +V +W P S T V+ ++ + +
Sbjct: 95 PEEPQLSCFRKSPLSNVVCEWGPR-STPSLT-TKAVLLVRKFQNSPAEDFQEPCQYSQES 152
Query: 68 GETSCTVPG-LIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAPRI 116
+ SC + + Y + ++ G + T + P
Sbjct: 153 QKFSCQLAVPEGDSSFYIVSMCVASSVGSKFSKTQTFQGCGILQPDPPAN 202
|
| >2dbj_A Proto-oncogene tyrosine-protein kinase MER precursor; C-MER, receptor tyrosine kinase mertk, FN3 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 124 | Back alignment and structure |
|---|
Score = 55.6 bits (134), Expect = 9e-10
Identities = 18/104 (17%), Positives = 33/104 (31%), Gaps = 5/104 (4%)
Query: 4 SVLIKNPFDEP-GKPTDLEATDWDKDH-VDLQWTPP-ISDGGSPITGYVVE--MKDKTGN 58
+L P P ++ + VD++W P + GY + + +
Sbjct: 8 WILASTTEGAPSVAPLNVTVFLNESSDNVDIRWMKPPTKQQDGELVGYRISHVWQSAGIS 67
Query: 59 WEKAVVVPAGETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPT 102
E V + + + T ++ AV G G S P
Sbjct: 68 KELLEEVGQNGSRARISVQVHNATCTVRIAAVTRGGVGPFSDPV 111
|
| >2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103 | Back alignment and structure |
|---|
Score = 54.2 bits (131), Expect = 2e-09
Identities = 21/108 (19%), Positives = 38/108 (35%), Gaps = 8/108 (7%)
Query: 346 GGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFE 405
G + +G I L D V GE+ + S P W + + +
Sbjct: 1 GSSGSSGPAAIIKPL--EDQWVAPGEDVELRCELSRAGTPV-HWLKDRKAIRKSQKYDVV 57
Query: 406 TSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPP 453
+ + A D+G YT + V + ++ ++V +K S P
Sbjct: 58 CEGTMAMLVIRGAS-LKDAGEYTCE----VEASKSTASLHVEEKASGP 100
|
| >1va9_A DOWN syndrome cell adhesion molecule like- protein 1B; FNIII domain, dscaml1 protein, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 122 | Back alignment and structure |
|---|
Score = 54.7 bits (132), Expect = 2e-09
Identities = 19/98 (19%), Positives = 33/98 (33%), Gaps = 7/98 (7%)
Query: 12 DEP-GKPTDLEATDWDKDHVDLQWTPPISDGGS-PITGYVVEMKDKTGNWEKA-----VV 64
P G P D+ + + W P + + I GY + ++ + +
Sbjct: 13 AAPDGPPMDVTLQPVTSQSIQVTWKAPKKELQNGVIRGYQIGYRENSPGSNGQYSIVEMK 72
Query: 65 VPAGETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPT 102
T+ L + Y V+A N AG G +S
Sbjct: 73 ATGDSEVYTLDNLKKFAQYGVVVQAFNRAGTGPSSSEI 110
|
| >1x5h_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 132 | Back alignment and structure |
|---|
Score = 54.7 bits (132), Expect = 2e-09
Identities = 24/96 (25%), Positives = 38/96 (39%), Gaps = 7/96 (7%)
Query: 12 DEP-GKPTDLEATDWDKDHVDLQWTPPISD---GGSPITGYVVEMKDKTGNWEKA-VVVP 66
D P P +L + + + W PP G ITGY + + + + +V
Sbjct: 16 DVPSAAPQNLSLEVRNSKSIMIHWQPPAPATQNG--QITGYKIRYRKASRKSDVTETLVS 73
Query: 67 AGETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPT 102
+ S + GL G Y F+V A+ G G A+
Sbjct: 74 GTQLSQLIEGLDRGTEYNFRVAALTINGTGPATDWL 109
|
| >2edx_A Protein tyrosine phosphatase, receptor type, F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 134 | Back alignment and structure |
|---|
Score = 54.7 bits (132), Expect = 2e-09
Identities = 23/96 (23%), Positives = 31/96 (32%), Gaps = 5/96 (5%)
Query: 12 DEP-GKPTDLEATDWDKDHVDLQWTPP-ISDGGSPITGYVVEMKDKTGNWEKA---VVVP 66
P P + V + W PP IT Y V + G +
Sbjct: 16 STPSAPPQKVMCVSMGSTTVRVSWVPPPADSRNGVITQYSVAYEAVDGEDRGRHVVDGIS 75
Query: 67 AGETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPT 102
+S + GL + Y+ VRA GPG S P
Sbjct: 76 REHSSWDLVGLEKWTEYRVWVRAHTDVGPGPESSPV 111
|
| >1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450 | Back alignment and structure |
|---|
Score = 58.3 bits (140), Expect = 3e-09
Identities = 40/282 (14%), Positives = 68/282 (24%), Gaps = 68/282 (24%)
Query: 174 WSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVTGT-- 231
++ Q S + + D G LT LG + T T
Sbjct: 225 LALGDQ---RLNPTVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIY 281
Query: 232 -------EFTDNNVHEGKAYEYRVSAVNAAGTEKPKISLDALIGKRIKEFVTSTTASLNI 284
T V EG V + K++L+ + A L +
Sbjct: 282 SFPAPNVILTKPEVSEGTEVT-----VKCEAHPRAKVTLN-----GVPAQPLGPRAQLLL 331
Query: 285 KNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVD 344
K + + + A + G + + T E
Sbjct: 332 KATPEDNGRSFSCSATLEVA------------------GQLIHKNQTRE----------- 362
Query: 345 DGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKF 404
+ P++ + T + T G P P +G P G
Sbjct: 363 ---LRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIGESVT 419
Query: 405 ETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYV 446
T + G+Y + +T G + V V
Sbjct: 420 VTRD--------------LEGTYLCRARSTQGEVTREVTVNV 447
|
| >2cui_A Tenascin-X; fibronectin type III domain, extracellular matirx, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 112 | Back alignment and structure |
|---|
Score = 53.8 bits (129), Expect = 3e-09
Identities = 15/106 (14%), Positives = 35/106 (33%), Gaps = 13/106 (12%)
Query: 13 EPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGN---------WEKAV 63
+ + L TD + L W P +++ + + ++ +
Sbjct: 8 SRPRLSQLSVTDVTTSSLRLNWEAP----PGAFDSFLLRFGVPSPSTLEPHPRPLLQREL 63
Query: 64 VVPAGETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKP 109
+VP S + L G Y + + ++ + TA ++ P
Sbjct: 64 MVPGTRHSAVLRDLRSGTLYSLTLYGLRGPHKADSIQGTARTLSGP 109
|
| >2cui_A Tenascin-X; fibronectin type III domain, extracellular matirx, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 112 | Back alignment and structure |
|---|
Score = 38.8 bits (90), Expect = 5e-04
Identities = 9/69 (13%), Positives = 23/69 (33%), Gaps = 4/69 (5%)
Query: 448 DKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATGVSDLFISKSEVK 507
P L V+D+T S L+W+ P ++++ + + +
Sbjct: 6 SGSRPRLSQLSVTDVTTSSLRLNWEAPPG----AFDSFLLRFGVPSPSTLEPHPRPLLQR 61
Query: 508 TGSLMTSKT 516
+ ++
Sbjct: 62 ELMVPGTRH 70
|
| >1ujt_A KIAA1568 protein; fibronectin type III domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 120 | Back alignment and structure |
|---|
Score = 53.7 bits (129), Expect = 3e-09
Identities = 19/77 (24%), Positives = 27/77 (35%), Gaps = 7/77 (9%)
Query: 30 VDLQWTPPISDGGSPITGYVV-----EMKDKTGNWEKAVVVPAGETSCTVPGLIEGETYQ 84
V + WT I GY V T +W+ E S + L +G TY+
Sbjct: 32 VQVTWTVD--RQPQFIQGYRVMYRQTSGLQATSSWQNLDAKVPTERSAVLVNLKKGVTYE 89
Query: 85 FQVRAVNAAGPGEASKP 101
+VR G S+
Sbjct: 90 IKVRPYFNEFQGMDSES 106
|
| >2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103 | Back alignment and structure |
|---|
Score = 52.7 bits (127), Expect = 5e-09
Identities = 21/111 (18%), Positives = 36/111 (32%), Gaps = 12/111 (10%)
Query: 346 GGTPITGAPKITSDLSIRDMTVLAGE--EFTITVPFSGRPKPTPIWTVNGDEVSPDGRIK 403
G + +GA T +L ++ V FT P T W E+ G+ +
Sbjct: 1 GSSGSSGANCFTEEL--TNLQVEEKGTAVFTCKT---EHPAATVTWRKGLLELRASGKHQ 55
Query: 404 FETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQ 454
+ DS +YT +G + ++ V + S P
Sbjct: 56 PSQEGLTLRLTISAL-EKADSDTYTC----DIGQAQSRAQLLVQGRRSGPS 101
|
| >3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214 | Back alignment and structure |
|---|
Score = 55.5 bits (133), Expect = 5e-09
Identities = 36/182 (19%), Positives = 56/182 (30%), Gaps = 43/182 (23%)
Query: 271 IKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTV 330
V S AS+N+ N D G Y+ + K G+ + V+ KP +
Sbjct: 75 TSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVKPSGTRCFV----- 129
Query: 331 TPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTIT-VPFSGRPKPTPIW 389
D + G +F + P G W
Sbjct: 130 ---------------------------------DGSEEIGNDFKLKCEPKEGSLPLQFEW 156
Query: 390 TVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDK 449
D + E + +N S + SG+Y+ + N VGSD ++ VV
Sbjct: 157 QKLSDSQTMPTPWLAEMTSPVISVKNAS---SEYSGTYSCTVQNRVGSDQCMLRLDVVP- 212
Query: 450 PS 451
PS
Sbjct: 213 PS 214
|
| >3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214 | Back alignment and structure |
|---|
Score = 42.0 bits (98), Expect = 2e-04
Identities = 25/141 (17%), Positives = 48/141 (34%), Gaps = 16/141 (11%)
Query: 192 TKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVTGTE-------FTDNNVHEGKAY 244
+ +++ SD G Y ++ G A +T F D + G +
Sbjct: 80 KSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVKPSGTRCFVDGSEEIGNDF 139
Query: 245 EYRVSAVNAAGTEKPKIS---LDALIGKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKN 301
+ + G+ + L T+ +++KN+ + SG Y +N
Sbjct: 140 KLKCEP--KEGSLPLQFEWQKLSDSQTMPTPWLAEMTSPVISVKNASSEYSGTYSCTVQN 197
Query: 302 DYGIDMADIEVVVVSKPGPPT 322
G D + + VV PP+
Sbjct: 198 RVGSDQCMLRLDVV----PPS 214
|
| >1uen_A KIAA0343 protein; immunoglobulin-like beta-sandwich fold, fibronectin type III, NG-CAM related cell adhesion molecule, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 125 | Back alignment and structure |
|---|
Score = 53.2 bits (128), Expect = 7e-09
Identities = 21/101 (20%), Positives = 35/101 (34%), Gaps = 10/101 (9%)
Query: 12 DEP-GKPTDLEATDWDKDHVDLQWTPPISDGGS-PITGYVV--------EMKDKTGNWEK 61
D P P ++ + ++ W P + GY + +++ +K
Sbjct: 12 DLPMVAPGNVRVNVVNSTLAEVHWDPVPLKSIRGHLQGYRIYYWKTQSSSKRNRRHIEKK 71
Query: 62 AVVVPAGETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPT 102
+ +T +PGL Y VR VN G G AS
Sbjct: 72 ILTFQGSKTHGMLPGLEPFSHYTLNVRVVNGKGEGPASPDR 112
|
| >3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289 | Back alignment and structure |
|---|
Score = 55.9 bits (134), Expect = 9e-09
Identities = 40/293 (13%), Positives = 66/293 (22%), Gaps = 56/293 (19%)
Query: 174 WSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVTGTEF 233
W Q A Q +VL + + DTG Y T ++ G T
Sbjct: 30 WERMSQE-PPQEMAKAQDGTFSSVLTLTNLTGLDTGEYFCTHNDSRGLETDERKRLYIFV 88
Query: 234 TDNNVHEGKAYEYRVSAVNAAGTE----------KPKISLDALIGKRIKEFVTSTTASLN 283
D V + TE + ++L G +
Sbjct: 89 PDPTVGFLPNDAEELFIFLTEITEITIPCRVTDPQLVVTLHEKKGDVALPVPYDHQRGFS 148
Query: 284 IKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPV 343
+ Y + +D V + +V
Sbjct: 149 GIF----EDRSYICKTTIGDREVDSDAYYVYRLQVSSIN-----VSVNAVQT-------- 191
Query: 344 DDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIK 403
V GE T+ G WT E
Sbjct: 192 ----------------------VVRQGENITLMCIVIGNEVVNFEWTYPRKESGRLVEPV 229
Query: 404 FETSENQTIYRNK----SAKRATDSGSYTIQLVNTVG--SDSASCKVYVVDKP 450
+ + + + DSG+YT + +V D + + VV+
Sbjct: 230 TDFLLDMPYHIRSILHIPSAELEDSGTYTCNVTESVNDHQDEKAINITVVESG 282
|
| >3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289 | Back alignment and structure |
|---|
Score = 42.4 bits (99), Expect = 2e-04
Identities = 26/258 (10%), Positives = 61/258 (23%), Gaps = 58/258 (22%)
Query: 266 LIGKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPI 325
+ K + ++ L + N D+G Y + G++ + + + + P P
Sbjct: 37 PPQEMAKAQDGTFSSVLTLTNLTGLDTGEYFCTHNDSRGLETDERKRLYIFVPDPTV--- 93
Query: 326 DYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKP 385
+ +D + + E TI + P+
Sbjct: 94 ----------------------------GFLPNDAEELFIFLTEITEITIPCRVTD-PQL 124
Query: 386 TPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVY 445
G + + + + SY + +
Sbjct: 125 VVTLH------EKKGDVALPVPYD----HQRGFSGIFEDRSYICKTTIGDREVDSDAYYV 174
Query: 446 VVDKPSPPQGPLDVSDITPE-------SCS--------LSWKPPLDDGGSPITNYVVEKY 490
+ S ++ C W P + G +
Sbjct: 175 YRLQVSSINVSVNAVQTVVRQGENITLMCIVIGNEVVNFEWTYPRKESGRLVEPVTDFLL 234
Query: 491 ESATGV-SDLFISKSEVK 507
+ + S L I +E++
Sbjct: 235 DMPYHIRSILHIPSAELE 252
|
| >1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 103 | Back alignment and structure |
|---|
Score = 51.9 bits (125), Expect = 1e-08
Identities = 21/112 (18%), Positives = 37/112 (33%), Gaps = 12/112 (10%)
Query: 347 GTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFET 406
G+ + +T L D T GE + S W NG+E+ P + ++
Sbjct: 1 GSSGSSGIMVTKQL--EDTTAYCGERVELECEVSE-DDANVKWFKNGEEIIPGPKSRYRI 57
Query: 407 SENQTIYR---NKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQG 455
+ + D+ Y++ +S K+ V K P G
Sbjct: 58 RVEGKKHILIIEGA--TKADAAEYSVM----TTGGQSSAKLSVDLKSGPSSG 103
|
| >3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49} Length = 304 | Back alignment and structure |
|---|
Score = 55.6 bits (133), Expect = 1e-08
Identities = 38/285 (13%), Positives = 87/285 (30%), Gaps = 44/285 (15%)
Query: 186 RADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVT----------GTEFTD 235
+ D + L + + + G Y +T+++ + + V TE
Sbjct: 42 KDDQPHENNTATLTVADATSENAGSYKVTVQDTDTMTSVESEVFLMEEAELIVNITEPQH 101
Query: 236 NNVHEGKAYEYRVSAVNAAGTEKPKISLDALIGKRIKEFVTSTTASLNIKNSVRKDSGIY 295
V E + + G + ++ + TT + I+ +G+Y
Sbjct: 102 FYVSSQTDVELHATVKFSGGKTPADNYELHYSWSKGEDVI-DTTQDITIQEFTADKNGVY 160
Query: 296 KIEAKNDYGIDMADIEVVVVSKPGPPTGPI--DYTTVTPESVSMSWKPPVDDGGTPITGA 353
++ + A ++ + T +S+++ D G +G
Sbjct: 161 TVKVWGESEDSAASASTKIMLATMNVDQDVVESKTVALGNEISLNYVVSEDIVGDS-SGM 219
Query: 354 PKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIY 413
P +T ++ + G+ PT I + G+ + F + + ++
Sbjct: 220 PNLTI-------------KYNWYLQREGQLSPTLIGSEVGEALE-----GFSITPDGHLF 261
Query: 414 RNKSAKRATDSGSYT----------IQLVNTVGSDSASCKVYVVD 448
K + D+ + + V S S C + VV
Sbjct: 262 --KESATYDDTAKFWCVAKLYQQIEDETVEVAASTSRKCSMEVVK 304
|
| >3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49} Length = 304 | Back alignment and structure |
|---|
Score = 49.1 bits (116), Expect = 2e-06
Identities = 33/241 (13%), Positives = 68/241 (28%), Gaps = 51/241 (21%)
Query: 275 VTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPP---TGPIDYTTVT 331
+ TA+L + ++ +++G YK+ ++ + + EV ++ + T P + +
Sbjct: 47 HENNTATLTVADATSENAGSYKVTVQDTDTMTSVESEVFLMEEAELIVNITEPQHFYVSS 106
Query: 332 PESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTV 391
V + G TP + + W+
Sbjct: 107 QTDVELHATVKFSGGKTP------------------------------ADNYELHYSWSK 136
Query: 392 NGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPS 451
D + I + A +G YT+++ +AS ++
Sbjct: 137 GEDVIDTTQDITIQEF------------TADKNGVYTVKVWGESEDSAASASTKIMLATM 184
Query: 452 PPQGPLDVSDITPE------SCSLSWKPPLDDGGSPITNYVVEKYESATGVSDLFISKSE 505
+ S + +S D G P Y G + SE
Sbjct: 185 NVDQDVVESKTVALGNEISLNYVVSEDIVGDSSGMPNLTIKYNWYLQREGQLSPTLIGSE 244
Query: 506 V 506
V
Sbjct: 245 V 245
|
| >3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49} Length = 304 | Back alignment and structure |
|---|
Score = 41.7 bits (97), Expect = 3e-04
Identities = 23/136 (16%), Positives = 49/136 (36%), Gaps = 20/136 (14%)
Query: 353 APKITSDLSIRDMTVLAGEEFTITVPFSG-RPKPTPI---WTVNGDEVSPDGRIKFETSE 408
A ++ + LAG+ FT+T +G P P+ + WT + + T+
Sbjct: 2 AFTVSIQSN--KRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHENN------TAT 53
Query: 409 NQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPP---QGPLDVSDITPE 465
+ + ++GSY + + +T S +V+++++ P +
Sbjct: 54 LTV-----ADATSENAGSYKVTVQDTDTMTSVESEVFLMEEAELIVNITEPQHFYVSSQT 108
Query: 466 SCSLSWKPPLDDGGSP 481
L G +P
Sbjct: 109 DVELHATVKFSGGKTP 124
|
| >2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 113 | Back alignment and structure |
|---|
Score = 51.7 bits (124), Expect = 2e-08
Identities = 20/98 (20%), Positives = 35/98 (35%), Gaps = 6/98 (6%)
Query: 353 APKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTI 412
+ I + + E +T RP WT +G+EV + + +
Sbjct: 11 SSWIVYPSGKVYVAAVRLERVVLTCELC-RPWAEVRWTKDGEEVVESPALLLQKEDTVRR 69
Query: 413 YRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKP 450
+ + DSG Y + + +SAS V V + P
Sbjct: 70 LVLPAVQLE-DSGEYLCE----IDDESASFTVTVTEPP 102
|
| >1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182 | Back alignment and structure |
|---|
Score = 53.3 bits (128), Expect = 2e-08
Identities = 30/198 (15%), Positives = 59/198 (29%), Gaps = 57/198 (28%)
Query: 253 AAGTEKPKIS-------LDALIGKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGI 305
G E+P I + L I L++K+ R D+G Y + ++
Sbjct: 26 VEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDGGET 85
Query: 306 DM-ADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRD 364
++ + + V P + TV P+ D
Sbjct: 86 EISQPVWLTVEGVP--------FFTVEPK------------------------------D 107
Query: 365 MTVLAGEEFTITVPFSGRPKPTPI-WTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATD 423
+ V F ++ G P+P I W ++ + + ++ T
Sbjct: 108 LAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGP-------APSPSVLNV---TGVTQ 157
Query: 424 SGSYTIQLVNTVGSDSAS 441
S ++ + N G S+
Sbjct: 158 STMFSCEAHNLKGLASSR 175
|
| >1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182 | Back alignment and structure |
|---|
Score = 44.4 bits (105), Expect = 2e-05
Identities = 24/111 (21%), Positives = 42/111 (37%), Gaps = 6/111 (5%)
Query: 353 APKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTI 412
K+ +TV G+ + G +P W +G V ++ SE I
Sbjct: 2 GLKLMGAPV--KLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWI 59
Query: 413 Y--RNKSAKRATDSGSYTIQLVNTVGSD-SASCKVYVVDKPSPPQGPLDVS 460
KS +R +D+G Y Q+ + ++ S + V P P D++
Sbjct: 60 GFLSLKSVER-SDAGRYWCQVEDGGETEISQPVWLTVEGVPFFTVEPKDLA 109
|
| >1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182 | Back alignment and structure |
|---|
Score = 40.9 bits (96), Expect = 3e-04
Identities = 28/157 (17%), Positives = 51/157 (32%), Gaps = 26/157 (16%)
Query: 174 WSINGQVCQIGGRADVQTTKSETV--LDIPFCSRSDTGHYSLTLENNLGTA-TASAHVT- 229
W +G V Q + + ++ + L + RSD G Y +E+ T + +T
Sbjct: 36 WVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDGGETEISQPVWLTV 95
Query: 230 ------GTEFTDNNVHEGKAYEYRVSAVNAAGTEKPKISLDALI-----GKRIKEFVTST 278
E D V ++ AV G +P I +I
Sbjct: 96 EGVPFFTVEPKDLAVPPNAPFQLSCEAV---GPPEP-----VTIVWWRGTTKIGG---PA 144
Query: 279 TASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVV 315
+ + + S ++ EA N G+ + V +
Sbjct: 145 PSPSVLNVTGVTQSTMFSCEAHNLKGLASSRTATVHL 181
|
| >2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1 Length = 122 | Back alignment and structure |
|---|
Score = 51.8 bits (124), Expect = 2e-08
Identities = 23/115 (20%), Positives = 37/115 (32%), Gaps = 12/115 (10%)
Query: 350 ITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPI-WTVNGDEVSPDGRIKFETSE 408
+ G P I+S + L GE+ I P P I W+ + + ++
Sbjct: 11 VNGPPIISS---TQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVET 67
Query: 409 NQTIYRNKS------AKRATDSGSYTIQLVNTVGSDSASCKVYV--VDKPSPPQG 455
T S RA Y N+ GSD+ ++ + P G
Sbjct: 68 ISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQGSEMSGPSSG 122
|
| >2erj_C Cytokine receptor common gamma chain; immune system-cytok complex; HET: NAG FUC BMA; 3.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 Length = 247 | Back alignment and structure |
|---|
Score = 54.0 bits (129), Expect = 3e-08
Identities = 14/97 (14%), Positives = 31/97 (31%), Gaps = 4/97 (4%)
Query: 2 DHSVLIKNPFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEK 61
+L P P +L + ++L W + ++V+ + +
Sbjct: 125 ATQMLKLQNLVIPWAPENLTLHKLSESQLELNWNNRFL---NHCLEHLVQYRTDWDHSWT 181
Query: 62 AVVVPAGETSCTVPGLIEGETYQFQVRAVNAAGPGEA 98
++P + + Y F+VR+ G A
Sbjct: 182 -EQSVDYRHKFSLPSVDGQKRYTFRVRSRFNPLCGSA 217
|
| >2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195 | Back alignment and structure |
|---|
Score = 53.0 bits (127), Expect = 3e-08
Identities = 26/185 (14%), Positives = 48/185 (25%), Gaps = 51/185 (27%)
Query: 272 KEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYG-IDMADIEVVVVSKPGPPTGPIDYTTV 330
++ + L I + D+G Y+ + V + P Y
Sbjct: 60 EQDDWIVVSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEGLP--------YFLE 111
Query: 331 TPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPI-W 389
PE D TV A F ++ G P+P + W
Sbjct: 112 EPE------------------------------DRTVAANTPFNLSCQAQGPPEPVDLLW 141
Query: 390 TVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDK 449
+ ++ R+ + S++ + N G ++ V
Sbjct: 142 LQDAVPLATAPG--------HGPQRSLHVPGLNKTSSFSCEAHNAKGVTTSRTATITV-- 191
Query: 450 PSPPQ 454
P Q
Sbjct: 192 -LPQQ 195
|
| >2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212 | Back alignment and structure |
|---|
Score = 52.5 bits (126), Expect = 5e-08
Identities = 34/178 (19%), Positives = 52/178 (29%), Gaps = 42/178 (23%)
Query: 281 SLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWK 340
+ R D G+Y A+N G E+VS
Sbjct: 73 RIVHGRKSRPDEGVYVCVARNYLG----------------------------EAVSHDAS 104
Query: 341 PPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTIT-VPFSGRPKPTPIWTVNGDEVSPD 399
V + D+ V GE + P G P+PT W +G +
Sbjct: 105 LEV------AILRDDFRQNP--SDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDK 156
Query: 400 GRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSD-SASCKVYVVDKPSPPQGP 456
I R +D+G Y N VG S ++ V+++PS +
Sbjct: 157 DERITIRGGKLMITY----TRKSDAGKYVCVGTNMVGERESEVAELTVLERPSFVKAA 210
|
| >2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212 | Back alignment and structure |
|---|
Score = 44.4 bits (105), Expect = 2e-05
Identities = 28/117 (23%), Positives = 38/117 (32%), Gaps = 12/117 (10%)
Query: 353 APKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDG------RIKFET 406
P+I D+ V GE T+ GRP PT W G+ V D R+ +
Sbjct: 9 PPRIVE--HPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPS 66
Query: 407 SENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPP---QGPLDVS 460
+ K D G Y N +G + S + Q P DV
Sbjct: 67 GSLFFLRIVHGRKSRPDEGVYVCVARNYLGE-AVSHDASLEVAILRDDFRQNPSDVM 122
|
| >2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A Length = 108 | Back alignment and structure |
|---|
Score = 50.1 bits (120), Expect = 6e-08
Identities = 18/105 (17%), Positives = 32/105 (30%), Gaps = 9/105 (8%)
Query: 346 GGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFE 405
G + +G + T DL + G T+ S W + + GR +
Sbjct: 1 GSSGSSGPARFTQDL--KTKEASEGATATLQCELS--KVAPVEWKKGPETLRDGGRYSLK 56
Query: 406 TSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKP 450
+ + D+G Y+ G + S + V P
Sbjct: 57 QDGTRCELQIHDL-SVADAGEYSCM----CGQERTSATLTVRALP 96
|
| >2b5i_C Cytokine receptor common gamma chain; four-helix bundle, fibronectin domain, cytokine-cytokine REC complex; HET: NAG; 2.30A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 3bpl_C* 3qb7_C* 3qaz_C* Length = 199 | Back alignment and structure |
|---|
Score = 51.3 bits (122), Expect = 1e-07
Identities = 13/85 (15%), Positives = 29/85 (34%), Gaps = 4/85 (4%)
Query: 14 PGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVVVPAGETSCT 73
P P +L + ++L W + ++V+ + + +
Sbjct: 99 PWAPENLTLHKLSESQLELNWNNRFL---NHCLEHLVQYRTDWDHSWT-EQSVDYRHKFS 154
Query: 74 VPGLIEGETYQFQVRAVNAAGPGEA 98
+P + + Y F+VR+ G A
Sbjct: 155 LPSVDGQKRYTFRVRSRFNPLCGSA 179
|
| >1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E* Length = 204 | Back alignment and structure |
|---|
Score = 51.4 bits (122), Expect = 1e-07
Identities = 20/170 (11%), Positives = 46/170 (27%), Gaps = 15/170 (8%)
Query: 277 STTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVS 336
N+ ++ + G+Y+ + + + + + ++
Sbjct: 46 EDKKKWNLGSNAKDPRGMYQCKGSQNKSKPLQVYYRMGSADD-----------AKKDAAK 94
Query: 337 MSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEV 396
D G ++ ++G +T P P +W N +
Sbjct: 95 KDDAKKDDAKKDGSDGNEEMGGITQTPYKVSISGTTVILTCPQY--PGSEILWQHNDKNI 152
Query: 397 SPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYV 446
D K ++ K SG Y + D A+ +Y+
Sbjct: 153 GGDEDDKN-IGSDEDHLSLKEFSELEQSGYYVCYPRGSKPED-ANFYLYL 200
|
| >1wj3_A KIAA1496 protein; beta sandwich, PANG, structural genomics, riken structural genomics/proteomics initiative, RSGI, neuropeptide; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 117 | Back alignment and structure |
|---|
Score = 49.5 bits (118), Expect = 1e-07
Identities = 22/91 (24%), Positives = 36/91 (39%), Gaps = 4/91 (4%)
Query: 12 DEPGKPTDLEATDWDKDHVDLQWTP-PISDGGSPITGYVVEMKDKTGNWEKAVVVPAGET 70
P +P + V L W + S +TGY V + + N + V+ +T
Sbjct: 16 TPPSQPPGNVVWNATDTKVLLNWEQVKAMENESEVTGYKVFYRTSSQNNVQ--VLNTNKT 73
Query: 71 SCTVPGLIEGETYQFQVRAVNAAGPGEASKP 101
S + L E Y +V+A G G +S+
Sbjct: 74 SAELV-LPIKEDYIIEVKATTDGGDGTSSEQ 103
|
| >1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A Length = 182 | Back alignment and structure |
|---|
Score = 50.7 bits (121), Expect = 2e-07
Identities = 22/173 (12%), Positives = 44/173 (25%), Gaps = 53/173 (30%)
Query: 277 STTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVS 336
+L IK+ D IYK+ + G ++ + + +
Sbjct: 63 FKNGTLKIKHLKTDDQDIYKVSIYDTKGKNVLEKIFDLKIQERVSK-------------- 108
Query: 337 MSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEV 396
PKI+ T+T P +G +
Sbjct: 109 -----------------PKISWT----------CINTTLTCEVMNGTDPELNLYQDGKHL 141
Query: 397 SPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDK 449
R+ ++ + + S + N V +S+ V +K
Sbjct: 142 KLSQRV--------ITHKWTT----SLSAKFKCTAGNKVSKESSVEPVSCPEK 182
|
| >1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A Length = 182 | Back alignment and structure |
|---|
Score = 44.9 bits (106), Expect = 1e-05
Identities = 15/129 (11%), Positives = 42/129 (32%), Gaps = 13/129 (10%)
Query: 358 SDLSIRDMTVLAGEEFTITVPFSGRPKPTP--IWTVNGDEVS----PDGRIKFETSENQT 411
+ + G++ + +P W D+ + F+ +
Sbjct: 2 EITNALETWGALGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYK 61
Query: 412 IYRNKSAK----RATDSGSYTIQLVNTVGSDSASCK--VYVVDKPSPPQGPLDVSDITPE 465
+++N + K + D Y + + +T G + + + ++ S P+ + T
Sbjct: 62 LFKNGTLKIKHLKTDDQDIYKVSIYDTKGKNVLEKIFDLKIQERVSKPKISWTCINTT-L 120
Query: 466 SCSLSWKPP 474
+C +
Sbjct: 121 TCEVMNGTD 129
|
| >4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349 | Back alignment and structure |
|---|
Score = 52.6 bits (125), Expect = 2e-07
Identities = 42/292 (14%), Positives = 80/292 (27%), Gaps = 58/292 (19%)
Query: 192 TKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVTGTEFTDNNVHEGKAYEYRVSAV 251
+K + VL +DTG+Y+ L N + + + + K +++
Sbjct: 75 SKEKDVLWFRPTLLNDTGNYTCMLRNTTYCSKVAFPLEVVQKDSCFNSPMKLPVHKLYIE 134
Query: 252 N-------------AAGTEKPKISLDALIGKRIKE--FVTSTTASLNIKNSVRKDSGIYK 296
+ KP I+ + +I+ V +L+ ++ ++G Y
Sbjct: 135 YGIQRITCPNVDGYFPSSVKPTITW-YMGCYKIQNFNNVIPEGMNLSFLIALISNNGNYT 193
Query: 297 IEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKI 356
+ T + TV + PPV I
Sbjct: 194 CVVTYPEN-----------GRTFHLTRTL---TVKVVGSPKNAVPPV------------I 227
Query: 357 TSDLSIRDMTVLAGEEFTI----TVPFSGRPKPTPIWTVNGDEV-SPDGRIKFETSENQT 411
S GEE I F + WT++G + + S + +
Sbjct: 228 HSPNDHVVYEKEPGEELLIPCTVYFSFLMDSRNEVWWTIDGKKPDDITIDVTINESISHS 287
Query: 412 IYRN---------KSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQ 454
+ K SY + G + + V K P+
Sbjct: 288 RTEDETRTQILSIKKVTSEDLKRSYVCHARSAKGEVAKA--AKVKQKVPAPR 337
|
| >4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349 | Back alignment and structure |
|---|
Score = 46.8 bits (110), Expect = 1e-05
Identities = 27/190 (14%), Positives = 50/190 (26%), Gaps = 38/190 (20%)
Query: 275 VTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPES 334
++ L + ++ D+G Y +N + VV K P+
Sbjct: 74 ISKEKDVLWFRPTLLNDTGNYTCMLRNTTYCSKVAFPLEVVQKDSCFNSPMKLPV----- 128
Query: 335 VSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGD 394
+ G P + F KPT W +
Sbjct: 129 -----HKLYIEYGIQRITCP-------------------NVDGYFPSSVKPTITWYMGCY 164
Query: 395 EVSPDGRIKFETSENQTIYRNKSAKRATDSGSYT----IQLVNTVGSDSASCKVYVVDKP 450
++ + E N + +++G+YT + + V VV P
Sbjct: 165 KIQNFNNVIPE-GMNLSF----LIALISNNGNYTCVVTYPENGRTFHLTRTLTVKVVGSP 219
Query: 451 SPPQGPLDVS 460
P+ S
Sbjct: 220 KNAVPPVIHS 229
|
| >4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349 | Back alignment and structure |
|---|
Score = 44.1 bits (103), Expect = 7e-05
Identities = 24/114 (21%), Positives = 37/114 (32%), Gaps = 15/114 (13%)
Query: 361 SIRDMTVLAGEEFTITVPF-----------SGRPKPTPIWTVNGDEVSPDGRIKFETSEN 409
++R + V E I P + T IW + + I F EN
Sbjct: 13 TMRQIQVFEDEPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPEN 72
Query: 410 QTIYRNKSAK----RATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQGPLDV 459
+ D+G+YT L NT + + VV K S P+ +
Sbjct: 73 RISKEKDVLWFRPTLLNDTGNYTCMLRNTTYCSKVAFPLEVVQKDSCFNSPMKL 126
|
| >3lqm_A Interleukin-10 receptor subunit beta; IL-10R2, common chain, cytokine, IL-10, IL-22, IL- 28, IL-29, disulfide bond, glycoprotein, membrane; 2.14A {Homo sapiens} Length = 201 | Back alignment and structure |
|---|
Score = 50.5 bits (120), Expect = 2e-07
Identities = 19/108 (17%), Positives = 34/108 (31%), Gaps = 5/108 (4%)
Query: 16 KPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVVVPAGETSCTVP 75
P ++ + ++ LQW P G + + +K + T C
Sbjct: 4 PPENVRMNSVNFKNI-LQWESPAFAKGQ--LTFTAQYLSYRIFQDKCMQTT--LTECDFS 58
Query: 76 GLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAPRIDRSTLND 123
L + + +VRA A + + T V P + L D
Sbjct: 59 SLSKYGDHTLRVRAEFADEHSDWVQITFSPVDDTIIGPPGMQVEVLAD 106
|
| >2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A Length = 100 | Back alignment and structure |
|---|
Score = 48.1 bits (115), Expect = 2e-07
Identities = 25/105 (23%), Positives = 37/105 (35%), Gaps = 7/105 (6%)
Query: 347 GTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFET 406
G+ + L V G V + PK W NG E+ P + FE
Sbjct: 1 GSSGSSGAAFAKILD-PAYQVDKGGRVRFVVELA-DPKLEVKWYKNGQEIRPSTKYIFEH 58
Query: 407 SENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPS 451
Q I + + TD Y + T G + S +++V PS
Sbjct: 59 KGCQRILFINNC-QMTDDSEYYV----TAGDEKCSTELFVRSGPS 98
|
| >2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100 | Back alignment and structure |
|---|
Score = 48.2 bits (115), Expect = 2e-07
Identities = 22/104 (21%), Positives = 37/104 (35%), Gaps = 7/104 (6%)
Query: 346 GGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSP-DGRIKF 404
G + +G P I + + T+ + +G P P W G D R
Sbjct: 1 GSSGSSGPPIILQGPA--NQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATI 58
Query: 405 ETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVD 448
+ I R +D+G+YT ++ G S S + V +
Sbjct: 59 QEQGTLQI----KNLRISDTGTYTCVATSSSGETSWSAVLDVTE 98
|
| >2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201 | Back alignment and structure |
|---|
Score = 50.4 bits (120), Expect = 2e-07
Identities = 25/177 (14%), Positives = 41/177 (23%), Gaps = 46/177 (25%)
Query: 276 TSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESV 335
++ T L + + G Y K + VV +V E
Sbjct: 63 SANTFFLVVTAANISHDGNYLCRMKLGETEVTKQEHLSVVKPL--------TLSVHSE-- 112
Query: 336 SMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTV-NGD 394
T+T + P P W + G
Sbjct: 113 ----------------------------RSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGV 144
Query: 395 EVSP---DGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVD 448
E +P +G + E + ++ + S T N VYV
Sbjct: 145 EPAPTAANGGVMKEKDGSLSVAVDLSL-PKPWHLPVTCVGKNDKEEAHG---VYVSG 197
|
| >2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201 | Back alignment and structure |
|---|
Score = 40.0 bits (93), Expect = 7e-04
Identities = 13/149 (8%), Positives = 35/149 (23%), Gaps = 19/149 (12%)
Query: 185 GRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVT-------GTEFTDNN 237
G D+ + + L + + S G+Y ++ T H++ +
Sbjct: 56 GFFDIHRSANTFFLVVTAANISHDGNYLCRMKLGETEVTKQEHLSVVKPLTLSVHSERSQ 115
Query: 238 VHEGKAYEYRVSAVNAAGTEKPKIS---------LDALIGKRIKEFVTSTTASLNIKNSV 288
+ + P + + + + + +
Sbjct: 116 FPDFSVLTVTCTVN---AFPHPHVQWLMPEGVEPAPTAANGGVMKEKDGSLSVAVDLSLP 172
Query: 289 RKDSGIYKIEAKNDYGIDMADIEVVVVSK 317
+ KND +S+
Sbjct: 173 KPWHLPVTCVGKNDKEEAHGVYVSGYLSQ 201
|
| >2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* Length = 265 | Back alignment and structure |
|---|
Score = 50.8 bits (121), Expect = 3e-07
Identities = 16/94 (17%), Positives = 26/94 (27%), Gaps = 14/94 (14%)
Query: 353 APKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTI 412
P++ + T + T G P P +G P G T +
Sbjct: 183 GPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIGESVTVTRD---- 238
Query: 413 YRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYV 446
G+Y + +T G + V V
Sbjct: 239 ----------LEGTYLCRARSTQGEVTREVTVNV 262
|
| >2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R* Length = 213 | Back alignment and structure |
|---|
Score = 50.2 bits (119), Expect = 4e-07
Identities = 21/192 (10%), Positives = 45/192 (23%), Gaps = 43/192 (22%)
Query: 272 KEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVT 331
+ I + + +G+ EAK + + + +VVV ++
Sbjct: 56 NRISWDSKKGFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYD-----VVLS 110
Query: 332 PESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTP--IW 389
P + + GE+ + W
Sbjct: 111 PSH-----------------------------GIELSVGEKLVLNCTARTELNVGIDFNW 141
Query: 390 TVNGDEVSPDGRIKFETSENQTIYRNKSAK-------RATDSGSYTIQLVNTVGSDSASC 442
+ + + K +D G YT + + + S
Sbjct: 142 EYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNST 201
Query: 443 KVYVVDKPSPPQ 454
V V + P +
Sbjct: 202 FVRVHEDPIEGR 213
|
| >2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R* Length = 213 | Back alignment and structure |
|---|
Score = 40.2 bits (93), Expect = 6e-04
Identities = 27/181 (14%), Positives = 43/181 (23%), Gaps = 23/181 (12%)
Query: 164 KLSEPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTAT 223
S LN + + + S+ IP S G + N +
Sbjct: 32 LGSISNLNVSLCARYPEKRFVPDGNRISWDSKKGFTIPSYMISYAGMVFCEAKINDESYQ 91
Query: 224 ASA---HVTGTEFTDNNVHEGKAYEYRV--SAV---NAAGTEKPKISLD----------- 264
+ V G D + E V V A I +
Sbjct: 92 SIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHK 151
Query: 265 ----ALIGKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGP 320
+ + + ++L I R D G+Y A + V V P
Sbjct: 152 KLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEDPIE 211
Query: 321 P 321
Sbjct: 212 G 212
|
| >2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 101 | Back alignment and structure |
|---|
Score = 47.3 bits (113), Expect = 4e-07
Identities = 18/111 (16%), Positives = 37/111 (33%), Gaps = 18/111 (16%)
Query: 346 GGTPITGAPKITSDLSIRDMTVLAGE--EFTITVPFSGRPKPTPIWTVNGDEVSPDGRI- 402
G + +G I + L D V G+ E + V +W NG E++ +
Sbjct: 1 GSSGSSGPVLIVTPL--EDQQVFVGDRVEMAVEV---SEEGAQVMWMKNGVELTREDSFK 55
Query: 403 -KFETSENQTIYR---NKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDK 449
++ ++ + + D G Y + ++ V +K
Sbjct: 56 ARYRFKKDGKRHILIFSDV--VQEDRGRYQVI----TNGGQCEAELIVEEK 100
|
| >3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A Length = 222 | Back alignment and structure |
|---|
Score = 49.6 bits (118), Expect = 5e-07
Identities = 28/188 (14%), Positives = 56/188 (29%), Gaps = 43/188 (22%)
Query: 271 IKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTV 330
+K+ ++ A+L I + +D+G+Y+ G D I V V + I
Sbjct: 71 LKDQLSLGNAALQITDVKLQDAGVYRCMISYG-GADYKRITVKVNAPYNKINQRIL---- 125
Query: 331 TPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWT 390
+ E +T G PK IWT
Sbjct: 126 ----------------------------------VVDPVTSEHELTCQAEGYPKAEVIWT 151
Query: 391 VNGDEVSPDGRIKFETSENQTIYRNKSAKR--ATDSGSYTIQLVNTVGSDSASCKVYVVD 448
+ +V + + ++ S R T + + ++ + ++ + +
Sbjct: 152 SSDHQVLSGKTTTTNSKREEKLFNVTSTLRINTTTNEIFYCTFRRLDPEENHTAELVIPE 211
Query: 449 KP--SPPQ 454
P PP
Sbjct: 212 LPLAHPPN 219
|
| >3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* Length = 208 | Back alignment and structure |
|---|
Score = 49.3 bits (117), Expect = 5e-07
Identities = 26/180 (14%), Positives = 49/180 (27%), Gaps = 48/180 (26%)
Query: 278 TTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSM 337
+ SL + KD G+Y ++ ++ V +P
Sbjct: 69 SNGSLLFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQP--------------- 113
Query: 338 SWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVS 397
L + + TV + T+T S W N +
Sbjct: 114 ---------------------FLQVTNTTVKELDSVTLTC-LSNDIGANIQWLFNSQSLQ 151
Query: 398 PDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVG---SDSASCKVYVVDKPSPPQ 454
R+ + N + + + D+G Y ++ N V S+S + P
Sbjct: 152 LTERMTL-SQNNSILRIDPI--KREDAGEYQCEISNPVSVRRSNSIKLDIIF-----DPH 203
|
| >3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* Length = 208 | Back alignment and structure |
|---|
Score = 44.7 bits (105), Expect = 2e-05
Identities = 27/176 (15%), Positives = 60/176 (34%), Gaps = 25/176 (14%)
Query: 162 WVKLSEPFLNH---GWSINGQVCQIG-GRADVQTTKSETVLDIPFCSRSDTGHYSLTLEN 217
W K + ++ + N + G + + S L + D G Y+L + +
Sbjct: 33 WYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGSLLFQMITMKDMGVYTLDMTD 92
Query: 218 NLG-TATASAHVTGTEF--------TDNNVHEGKAYEYRVSAVNAAGTEKPKIS-----L 263
A+ + T+ V E + V+ + I
Sbjct: 93 ENYRRTQATVRFHVHQPVTQPFLQVTNTTVKELDS----VTLTCLSNDIGANIQWLFNSQ 148
Query: 264 DALIGKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMAD-IEVVVVSKP 318
+ +R+ ++ + L I R+D+G Y+ E N + ++ I++ ++ P
Sbjct: 149 SLQLTERMT--LSQNNSILRIDPIKREDAGEYQCEISNPVSVRRSNSIKLDIIFDP 202
|
| >2b5i_B Interleukin-2 receptor beta chain; four-helix bundle, fibronectin domain, cytokine-cytokine REC complex; HET: NAG; 2.30A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 3qaz_B* 2erj_B* Length = 214 | Back alignment and structure |
|---|
Score = 49.4 bits (117), Expect = 5e-07
Identities = 19/108 (17%), Positives = 33/108 (30%), Gaps = 4/108 (3%)
Query: 14 PGKPTDLEATDWDKDHVDLQW-TPPISDGGSPITGYVVEMKDKTGNWEKA--VVVPAGET 70
P L+ + ++ W S + WE+A + + +
Sbjct: 106 LMAPISLQVVHVETHRCNISWEISQASHYFERHLEFEARTLSPGHTWEEAPLLTLKQKQE 165
Query: 71 SCTVPGLIEGETYQFQVRAVNAAGP-GEASKPTAPIVAKPKNLAPRID 117
+ L Y+FQVR G S + P+ + K A D
Sbjct: 166 WICLETLTPDTQYEFQVRVKPLQGEFTTWSPWSQPLAFRTKPAALGKD 213
|
| >1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A Length = 93 | Back alignment and structure |
|---|
Score = 46.5 bits (111), Expect = 6e-07
Identities = 11/93 (11%), Positives = 28/93 (30%), Gaps = 8/93 (8%)
Query: 354 PKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIY 413
++ L + V GE + S P W + G ++ + + I
Sbjct: 6 IEVEKPL--YGVEVFVGETAHFEIELS-EPDVHGQWKLKGQPLAASPDCEIIEDGKKHIL 62
Query: 414 RNKSAKRATDSGSYTIQLVNTVGSDSASCKVYV 446
+ + +G + + ++ + V
Sbjct: 63 ILHNC-QLGMTGEVSF----QAANTKSAANLKV 90
|
| >1oww_A FN, fibronectin first type III module, CIG; fibronectin type III module, structural protein; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 98 | Back alignment and structure |
|---|
Score = 46.3 bits (109), Expect = 9e-07
Identities = 20/88 (22%), Positives = 35/88 (39%), Gaps = 5/88 (5%)
Query: 14 PGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWE-KAVVVPAGETSC 72
P + E + +QW P S I+ Y++ + K K +P S
Sbjct: 8 PVEVFITETPS-QPNSHPIQWNAP---QPSHISKYILRWRPKNSVGRWKEATIPGHLNSY 63
Query: 73 TVPGLIEGETYQFQVRAVNAAGPGEASK 100
T+ GL G Y+ Q+ ++ G E ++
Sbjct: 64 TIKGLKPGVVYEGQLISIQQYGHQEVTR 91
|
| >3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A* Length = 268 | Back alignment and structure |
|---|
Score = 49.5 bits (117), Expect = 1e-06
Identities = 26/187 (13%), Positives = 52/187 (27%), Gaps = 15/187 (8%)
Query: 270 RIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTT 329
+ SL +++ + D GIY E + + V + P P D
Sbjct: 74 HLVGDTFHNDGSLLLQDVQKADEGIYTCEIRLKNESMVMKKPVELWV---LPEEPRDLRV 130
Query: 330 VTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIW 389
++ M ++T + EE ++ + R
Sbjct: 131 RVGDTTQM---RCSIQSTEE----KRVTKVNWMFSSGSHTEEETVLSYDSNMRSGKFQSL 183
Query: 390 TVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDK 449
+ V G I + + +I + +D G YT + + ++VV
Sbjct: 184 GRFRNRVDLTGDI---SRNDGSIKLQTV--KESDQGIYTCSIYVGKLESRKTIVLHVVQD 238
Query: 450 PSPPQGP 456
Sbjct: 239 EFQRTIS 245
|
| >3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X Length = 122 | Back alignment and structure |
|---|
Score = 46.7 bits (110), Expect = 1e-06
Identities = 13/97 (13%), Positives = 25/97 (25%), Gaps = 9/97 (9%)
Query: 363 RDMTVLAGEEFTITVPFSGRPKPTP--IWTVNGDEVSPDGRIKFETSENQTIYRNKSAK- 419
+ + GE+ + W + + + K
Sbjct: 16 HGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLST 75
Query: 420 ------RATDSGSYTIQLVNTVGSDSASCKVYVVDKP 450
+D G YT + + + S V V +KP
Sbjct: 76 LTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKP 112
|
| >3lb6_C IL-13, interleukin-13 receptor subunit alpha-2; cytokine, decoy, decoy receptor, glycoprotein; HET: MLY NAG; 3.05A {Homo sapiens} PDB: 3lb6_D* Length = 380 | Back alignment and structure |
|---|
Score = 49.0 bits (116), Expect = 2e-06
Identities = 17/104 (16%), Positives = 37/104 (35%), Gaps = 6/104 (5%)
Query: 17 PTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVVVPAGETSCTVPG 76
P L T + L+W+ P+ + Y +E+++ A V + T+
Sbjct: 241 PVYLTFTRESSCEIKLKWSIPLGPIPARCFDYEIEIREDDTTLVTATVE---NETYTLKT 297
Query: 77 LIEGETYQFQVRAVNAAGPGEA---SKPTAPIVAKPKNLAPRID 117
E F VR+ + S+ + + ++L+ +
Sbjct: 298 TNETRQLCFVVRSKVNIYCSDDGIWSEWSDKQCWEGEDLSKKTL 341
|
| >3lb6_C IL-13, interleukin-13 receptor subunit alpha-2; cytokine, decoy, decoy receptor, glycoprotein; HET: MLY NAG; 3.05A {Homo sapiens} PDB: 3lb6_D* Length = 380 | Back alignment and structure |
|---|
Score = 42.5 bits (99), Expect = 2e-04
Identities = 13/119 (10%), Positives = 31/119 (26%), Gaps = 6/119 (5%)
Query: 3 HSVLIKNPFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKA 62
+ I D++ ++ ++ W P + + + +
Sbjct: 126 TTYWISPQGIPETXVQDMDCVYYNWQYLLCSWKPG-IGVLLDTNYNLFYWYEGLDHALQC 184
Query: 63 ---VVVPAGETSCTVP--GLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAPRI 116
+ C P + + + V + P +S T + K L P
Sbjct: 185 VDYIKADGQNIGCRFPYLEASDYKDFYICVNGSSENKPIRSSYFTFQLQNIVKPLPPVY 243
|
| >2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 102 | Back alignment and structure |
|---|
Score = 45.5 bits (108), Expect = 2e-06
Identities = 14/89 (15%), Positives = 34/89 (38%), Gaps = 6/89 (6%)
Query: 363 RDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRAT 422
R++ AG T++ + + W +G ++S +++ E + A
Sbjct: 19 REVQAEAGASATLSCEVAQ-AQTEVTWYKDGKKLSSSSKVRVEAVGCTRRLVVQQA-GQA 76
Query: 423 DSGSYTIQLVNTVGSDSASCKVYVVDKPS 451
++G Y+ + G S ++ V +
Sbjct: 77 EAGEYSCE----AGGQQLSFRLQVAGQCF 101
|
| >2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus} Length = 95 | Back alignment and structure |
|---|
Score = 45.2 bits (107), Expect = 2e-06
Identities = 17/84 (20%), Positives = 29/84 (34%), Gaps = 6/84 (7%)
Query: 363 RDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRAT 422
+ V G+ + + W +G ++ R + T E + + A
Sbjct: 17 ESLLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLVESNRTRI-TGEEVEVRDSIPA---- 70
Query: 423 DSGSYTIQLVNTVGSDSASCKVYV 446
DSG Y + GSD+ V V
Sbjct: 71 DSGLYACVTSSPSGSDTTYFSVNV 94
|
| >3n06_B PRL-R, prolactin receptor; PH dependence, hematopoietic cytokine, hormone-hormone recep complex; 2.00A {Homo sapiens} PDB: 3mzg_B 3n0p_B 3ncb_B 1bp3_B 3d48_R 3nce_B 3ncc_B 3ncf_B 3ew3_B 3npz_B 1f6f_B 2lfg_A Length = 210 | Back alignment and structure |
|---|
Score = 47.4 bits (112), Expect = 2e-06
Identities = 22/98 (22%), Positives = 36/98 (36%), Gaps = 11/98 (11%)
Query: 14 PGKPTDLEAT----DWDKDHVDLQWTPPIS---DGGSPITGYVVEMKDK-TGNWEKAVVV 65
P P +L + K ++ ++W+PP G Y + +K + WE +
Sbjct: 103 PDPPLELAVEVKQPEDRKPYLWIKWSPPTLIDLKTGWFTLLYEIRLKPEKAAEWE--IHF 160
Query: 66 PAGETSCTVPGLIEGETYQFQVRAVNAAGP-GEASKPT 102
+T + L G+ Y QVR G S T
Sbjct: 161 AGQQTEFKILSLHPGQKYLVQVRCKPDHGYWSAWSPAT 198
|
| >3n06_B PRL-R, prolactin receptor; PH dependence, hematopoietic cytokine, hormone-hormone recep complex; 2.00A {Homo sapiens} PDB: 3mzg_B 3n0p_B 3ncb_B 1bp3_B 3d48_R 3nce_B 3ncc_B 3ncf_B 3ew3_B 3npz_B 1f6f_B 2lfg_A Length = 210 | Back alignment and structure |
|---|
Score = 46.2 bits (109), Expect = 6e-06
Identities = 22/104 (21%), Positives = 34/104 (32%), Gaps = 4/104 (3%)
Query: 14 PGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNW-EKAVVVPAGETSC 72
PGKP + +K+ W P +DGG P + ++ E + G SC
Sbjct: 4 PGKPEIFKCRSPNKETFTCWWRPG-TDGGLPTNYSLTYHREGETLMHECPDYITGGPNSC 62
Query: 73 TVP--GLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAP 114
TY V A N G + + + + P
Sbjct: 63 HFGKQYTSMWRTYIMMVNATNQMGSSFSDELYVDVTYIVQPDPP 106
|
| >3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329 | Back alignment and structure |
|---|
Score = 48.3 bits (114), Expect = 3e-06
Identities = 28/181 (15%), Positives = 43/181 (23%), Gaps = 38/181 (20%)
Query: 275 VTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPES 334
+ + +L I N +DSG Y D DI V TV P
Sbjct: 177 YSQSGQNLIIHNPELEDSGRYDCYVHYDDVRIKNDIVVSRCKIL----------TVIPSQ 226
Query: 335 VSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPI----WT 390
D + PKI V GE IT W
Sbjct: 227 ----------DHRFKLILDPKI---------NVTIGEPANITCTAVSTSLLVDDVLIDWE 267
Query: 391 VNGDEVSPDGRIKFETSENQTIYRN-----KSAKRATDSGSYTIQLVNTVGSDSASCKVY 445
+ + + ++ +YT + N + + V
Sbjct: 268 NPSGWIIGLDFGVYSILTSSGGITEATLYFENVTEEYIGNTYTCRGHNYYFDKTLTTTVV 327
Query: 446 V 446
+
Sbjct: 328 L 328
|
| >3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329 | Back alignment and structure |
|---|
Score = 41.7 bits (97), Expect = 3e-04
Identities = 25/189 (13%), Positives = 39/189 (20%), Gaps = 44/189 (23%)
Query: 281 SLNIKNSVRKDSG-IYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSW 339
L I N DS Y G + I + KP
Sbjct: 90 DLWIANYTSNDSHRRYLCTVTTKNGDCVQGIVRSHIRKP--------------------- 128
Query: 340 KPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPF-SGRPKPTPIWTVNGDEVSP 398
P ++ + + W N E+
Sbjct: 129 --------------PSCIP--ETYELGTHDKYGIDLYCGILYAKHYNNITWYKNNQELII 172
Query: 399 DGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPS-PPQGPL 457
DG ++ +N I + + DSG Y + V + P
Sbjct: 173 DGTKYSQSGQNLII---HNPELE-DSGRYDCYVHYDDVRIKNDIVVSRCKILTVIPSQDH 228
Query: 458 DVSDITPES 466
I
Sbjct: 229 RFKLILDPK 237
|
| >1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3 Length = 176 | Back alignment and structure |
|---|
Score = 46.1 bits (109), Expect = 4e-06
Identities = 20/168 (11%), Positives = 34/168 (20%), Gaps = 53/168 (31%)
Query: 274 FVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPE 333
F L IKN R DSG Y + + G + + + +
Sbjct: 55 FEILANGDLKIKNLTRDDSGTYNVTVYSTNGTRILNKALDLRILEMVSK----------- 103
Query: 334 SVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNG 393
P I + S T+T
Sbjct: 104 --------------------PMIYWECS----------NATLTCEVLEGTDVELKLYQGK 133
Query: 394 DEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSAS 441
+ + + + + VN V +S
Sbjct: 134 EHLRSLRQKTMSYQWT------------NLRAPFKCKAVNRVSQESEM 169
|
| >1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3 Length = 176 | Back alignment and structure |
|---|
Score = 39.6 bits (92), Expect = 7e-04
Identities = 16/119 (13%), Positives = 32/119 (26%), Gaps = 9/119 (7%)
Query: 365 MTVLAGEEFTITVPFSGRPKPTP--IWTVNGDEVS--PDGRIKFETSENQTIYRNKSAK- 419
+ G + +P W V+ F S I N K
Sbjct: 6 VWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKI 65
Query: 420 ---RATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQGPLDVSDITPE-SCSLSWKPP 474
DSG+Y + + +T G+ + + + + + +C +
Sbjct: 66 KNLTRDDSGTYNVTVYSTNGTRILNKALDLRILEMVSKPMIYWECSNATLTCEVLEGTD 124
|
| >2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290 | Back alignment and structure |
|---|
Score = 47.4 bits (112), Expect = 4e-06
Identities = 40/284 (14%), Positives = 72/284 (25%), Gaps = 53/284 (18%)
Query: 182 QIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVTGTEFTDNNVHEG 241
+ + + TG Y+ + N L +S +V + +
Sbjct: 43 TFKTYFNEMVENKKNEWIQEKAEATRTGTYTCSNSNGLT---SSIYVFVRDPAKLFLVGL 99
Query: 242 KAYEYRVSAV----NAAGTEKPKISLDALIGKRI---KEFVTSTTASLNIKNSVRK-DSG 293
+ S + + SL GK + FV + A + IKN R
Sbjct: 100 PLFGKEDSDALVRCPLTDPQVSQYSLIECDGKSLPTDLTFVPNPKAGITIKNVKRAYHRL 159
Query: 294 IYKIEAKNDYGIDM-ADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITG 352
+ A+ D + V +V S
Sbjct: 160 CVRCAAQRDGTWLHSDKFTLKVREAIKAI----PVVSVPETSH----------------- 198
Query: 353 APKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPI-WTVNGDEVSPDGRIKFETSENQT 411
+ G+ FT+ W + ++K +
Sbjct: 199 -------------LLKKGDTFTVVCTIKDVSTSVNSMWLKMNPQPQHIAQVKHNSWHRGD 245
Query: 412 IYRNKSAK------RATDSGSYTIQLVNTVGSDSASCKVYVVDK 449
+ R DSG + NT GS + + + VV+K
Sbjct: 246 FNYERQETLTISSARVDDSGVFMCYANNTFGSANVTTTLKVVEK 289
|
| >2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290 | Back alignment and structure |
|---|
Score = 43.2 bits (101), Expect = 1e-04
Identities = 19/186 (10%), Positives = 34/186 (18%), Gaps = 46/186 (24%)
Query: 270 RIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTT 329
E V + + + +G Y N + I V V
Sbjct: 47 YFNEMVENKKNEWIQEKAEATRTGTYTCSNSNGLT---SSIYVFVRDPAKLFLVG----- 98
Query: 330 VTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIW 389
+ + + P +
Sbjct: 99 ---------------------------------LPLFGKEDSDALVRCPLTDPQVSQYSL 125
Query: 390 T-VNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYT-IQLVNTVGSDSASCKVYVV 447
+G + D TI K+ KRA + S + V
Sbjct: 126 IECDGKSLPTDLTFVPNPKAGITI---KNVKRAYHRLCVRCAAQRDGTWLHSDKFTLKVR 182
Query: 448 DKPSPP 453
+
Sbjct: 183 EAIKAI 188
|
| >2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens} Length = 95 | Back alignment and structure |
|---|
Score = 44.3 bits (105), Expect = 4e-06
Identities = 15/86 (17%), Positives = 24/86 (27%), Gaps = 6/86 (6%)
Query: 362 IRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRA 421
R + V AG W G ++S + T + +
Sbjct: 15 PRSVEVAAGSPAVFEAETER-AGVKVRWQRGGSDISASNKYGLATEGTRHTLTVREV-GP 72
Query: 422 TDSGSYTIQLVNTVGSDSASCKVYVV 447
D GSY + GS + V+
Sbjct: 73 ADQGSYAVI----AGSSKVKFDLKVI 94
|
| >2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 126 | Back alignment and structure |
|---|
Score = 45.0 bits (106), Expect = 4e-06
Identities = 15/103 (14%), Positives = 29/103 (28%), Gaps = 11/103 (10%)
Query: 363 RDMTVLAGEEFTITVPFSGRP---KPTPIWTVNG---DEVSPDGRIKFETSENQTIYRNK 416
+ TV GE+ T KPT W ++ + + +
Sbjct: 15 QGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYT 74
Query: 417 -----SAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQ 454
+ +G+Y ++ DS S + V +
Sbjct: 75 FEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHESTGTTP 117
|
| >2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 126 | Back alignment and structure |
|---|
Score = 40.0 bits (93), Expect = 3e-04
Identities = 8/55 (14%), Positives = 17/55 (30%)
Query: 267 IGKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPP 321
+ + + T + I + +G Y+ E D ++ V G
Sbjct: 62 LKETFERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHESTGTT 116
|
| >3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184 | Back alignment and structure |
|---|
Score = 46.2 bits (109), Expect = 5e-06
Identities = 23/186 (12%), Positives = 40/186 (21%), Gaps = 49/186 (26%)
Query: 268 GKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDY 327
G +KE K G Y + + + P
Sbjct: 38 GVVLKEDALPGQ-KTEFKVDSDDQWGEYSCVFLPEPM---GTANIQLHGPP--------- 84
Query: 328 TTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTP 387
+ + GE + P T
Sbjct: 85 ---------------------RVKAVK--------SSEHINEGETAMLVCKSESVPPVTD 115
Query: 388 I-WTVNGDEVSP------DGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSA 440
W D + R +S+ ++ ++ D G Y ++ GSD A
Sbjct: 116 WAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQA 175
Query: 441 SCKVYV 446
+ V
Sbjct: 176 IITLRV 181
|
| >3v6o_A Leptin receptor; receptor-antibody complex, cytokine receptor, antibody FAB F immunoglobulin fold; HET: NAG; 1.95A {Homo sapiens} Length = 206 | Back alignment and structure |
|---|
Score = 46.2 bits (109), Expect = 7e-06
Identities = 19/98 (19%), Positives = 33/98 (33%), Gaps = 5/98 (5%)
Query: 14 PGKPTDLEATD-WDKDHVDLQWTPPISDGGSPITGYVVEMK--DKTGNWEKAVVVPAGET 70
P P+ ++A + + + W P+ + + + K W+ V A
Sbjct: 110 PLPPSSVKAEITINIGLLKISWEKPVFPENNLQ--FQIRYGLSGKEVQWKMYEVYDAKSK 167
Query: 71 SCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAK 108
S ++P Y QVR G G S + P
Sbjct: 168 SVSLPVPDLCAVYAVQVRCKRLDGLGYWSNWSNPAYTV 205
|
| >3g9v_A Interleukin 22 receptor, alpha 2; cytokine, cytokine receptor, receptor, glycoprotein, polymorphism, secreted, cytokine/cytokine receptor complex; 2.76A {Homo sapiens} Length = 211 | Back alignment and structure |
|---|
Score = 45.9 bits (108), Expect = 7e-06
Identities = 25/106 (23%), Positives = 36/106 (33%), Gaps = 6/106 (5%)
Query: 13 EPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKD-KTGNWE-KAVVVPAGET 70
E KP ++ + ++ LQW P + Y V+ K W+ K E
Sbjct: 7 ESLKPQRVQFQSRNFHNI-LQWQPG-RALTGNSSVYFVQYKIYGQRQWKNKEDCWGTQEL 64
Query: 71 SC--TVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAP 114
SC T E Y +VRA +A E S + P
Sbjct: 65 SCDLTSETSDIQEPYYGRVRAASAGSYSEWSMTPRFTPWWETKIDP 110
|
| >3g9v_A Interleukin 22 receptor, alpha 2; cytokine, cytokine receptor, receptor, glycoprotein, polymorphism, secreted, cytokine/cytokine receptor complex; 2.76A {Homo sapiens} Length = 211 | Back alignment and structure |
|---|
Score = 40.5 bits (94), Expect = 5e-04
Identities = 10/100 (10%), Positives = 20/100 (20%), Gaps = 12/100 (12%)
Query: 14 PGKPTDLEATDWDKDHVDLQW--TPPISDGGSPIT-------GYVVEMKDKTGNWEKAVV 64
P V L P ++ Y V + ++ V
Sbjct: 108 IDPPVMNITQVNGSLLVILHAPNLPYRYQKEKNVSIEDYYELLYRVFII-NNSLEKEQKV 166
Query: 65 VPAGETSCTVPGLIEGETYQFQVRAVNAA--GPGEASKPT 102
+ + L +Y + S+
Sbjct: 167 YEGAHRAVEIEALTPHSSYCVVAEIYQPMLDRRSQRSEER 206
|
| >3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens} Length = 91 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 9e-06
Identities = 15/98 (15%), Positives = 31/98 (31%), Gaps = 12/98 (12%)
Query: 354 PKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIY 413
+I + + ++ G + G P P W N + T E + +Y
Sbjct: 4 LQICVEPT--SQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPL---------THETKKLY 52
Query: 414 RNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPS 451
G+Y + N S + ++D+ +
Sbjct: 53 MVPYVDLE-HQGTYWCHVYNDRDSQDSKKVEIIIDELN 89
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 1e-05
Identities = 20/96 (20%), Positives = 32/96 (33%), Gaps = 6/96 (6%)
Query: 353 APKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTV-NGDEVSPDGRIKFETSENQT 411
+I D + + V G G P P +W VS + + T
Sbjct: 384 RARIR-DRKAQQVFVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTVFPDGT 442
Query: 412 IY-RNKSAKRATDSGSYTIQLVNTVGSDSASCKVYV 446
+ R D+G+Y N G+DS ++V
Sbjct: 443 LEVRYAQV---QDNGTYLCIAANAGGNDSMPAHLHV 475
|
| >3qt2_A Interleukin-5 receptor subunit alpha; cytokine type I receptor fold, fibronectin type III modules, helical bundle, cytokine, ligand-receptor complex; HET: BGC; 2.55A {Homo sapiens} Length = 317 | Back alignment and structure |
|---|
Score = 46.4 bits (109), Expect = 1e-05
Identities = 15/88 (17%), Positives = 34/88 (38%), Gaps = 4/88 (4%)
Query: 2 DHSVLIKNPFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEK 61
+ + D+ P ++ A + + +QW P+S Y V++ + + +
Sbjct: 209 FDQLFALHAIDQINPPLNVTAE-IEGTRMSIQWEKPVSAFPIHCFDYEVKIHNTRNGYLQ 267
Query: 62 AVVVPAGETSCTVPGLIEGETYQFQVRA 89
+ T+ + + + Y QVRA
Sbjct: 268 IEKL---MTNAFISIIDDLSKYDVQVRA 292
|
| >2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96 | Back alignment and structure |
|---|
Score = 43.2 bits (102), Expect = 1e-05
Identities = 14/101 (13%), Positives = 28/101 (27%), Gaps = 12/101 (11%)
Query: 347 GTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFET 406
G+ ++ + V G T+T +P P W +G +
Sbjct: 4 GSSGLEEVQLVVEP--EGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLPPSPVL-- 59
Query: 407 SENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVV 447
+ D G+Y+ ++ S V +
Sbjct: 60 ----IL----PEIGPQDQGTYSCVATHSSHGPQESRAVSIS 92
|
| >3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A Length = 137 | Back alignment and structure |
|---|
Score = 43.9 bits (103), Expect = 1e-05
Identities = 14/119 (11%), Positives = 29/119 (24%), Gaps = 16/119 (13%)
Query: 353 APKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTI 412
G + G P P W G + ++ + +
Sbjct: 21 MAGFVQAP--LSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARLDRV 78
Query: 413 YRNKSAK------------RATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQGPLDV 459
+ + + D+G+Y + N + + V K Q + V
Sbjct: 79 HIHATYHQHAASTISIDTLVEEDTGTYECRASNDPDRNHLTRAPRV--KWVRAQAVVLV 135
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 46.3 bits (110), Expect = 1e-05
Identities = 22/103 (21%), Positives = 39/103 (37%), Gaps = 9/103 (8%)
Query: 354 PKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIW-TVNGDEVSPDG-RIKFETSENQT 411
P I D+ V G + S + W T NG ++ +++ + T
Sbjct: 342 PVIVE--PPADLNVTEGMAAELKCRAST-SLTSVSWITPNGTVMTHGAYKVRIAVLSDGT 398
Query: 412 IY-RNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPP 453
+ N + D+G YT + N+VG+ +AS + V
Sbjct: 399 LNFTNVTV---QDTGMYTCMVSNSVGNTTASATLNVTGTHHHH 438
|
| >2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 112 | Back alignment and structure |
|---|
Score = 43.1 bits (101), Expect = 2e-05
Identities = 19/119 (15%), Positives = 41/119 (34%), Gaps = 16/119 (13%)
Query: 346 GGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFE 405
G + +G ++ + L D+ V GE+ ++ S + T W +NG+E+ +
Sbjct: 1 GSSGSSGTARLVAGL--EDVQVYDGEDAVFSLDLSTIIQGT--WFLNGEELKSNEPEGQV 56
Query: 406 TSENQTIYRNKSAKR---------ATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQG 455
+ + DSG+ + + S + + + P G
Sbjct: 57 EPGALRYRIEQKGLQHRLILHAVKHQDSGAL---VGFSCPGVQDSAALTIQESSGPSSG 112
|
| >1iar_B Protein (interleukin-4 receptor alpha chain); cytokine receptor,interleukin-4, cytokine/receptor complex; 2.30A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 3bpl_B* 3bpn_B* 3bpo_B* Length = 207 | Back alignment and structure |
|---|
Score = 44.6 bits (105), Expect = 2e-05
Identities = 20/97 (20%), Positives = 33/97 (34%), Gaps = 5/97 (5%)
Query: 14 PGKPTDLEATDWDKDHVDLQWTPPISDGGSPITG--YVVEMKDKTGNWEKAVV-VPAGET 70
P P +L D + L W+ P Y V + + + + V E
Sbjct: 98 PRAPGNLTVHTNVSDTLLLTWSNPYPPDNYLYNHLTYAVNIWSENDPADFRIYNVTYLEP 157
Query: 71 SCTVPG--LIEGETYQFQVRAVNAAGPGEASKPTAPI 105
S + L G +Y+ +VRA A S+ +
Sbjct: 158 SLRIAASTLKSGISYRARVRAWAQAYNTTWSEWSPST 194
|
| >3bpo_C Interleukin-13 receptor alpha-1 chain; IL4, IL13, IL4R, IL13R, cytokine, glycoprotein, IM response, membrane, phosphoprotein, secreted; HET: NAG; 3.00A {Homo sapiens} PDB: 3bpn_C* Length = 314 | Back alignment and structure |
|---|
Score = 45.3 bits (106), Expect = 2e-05
Identities = 14/98 (14%), Positives = 23/98 (23%), Gaps = 6/98 (6%)
Query: 17 PTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVVVPAGETSCTVPG 76
T+L + + V W PP + Y DK
Sbjct: 7 VTNLSVSVENLCTVIWTWNPPEGASSNCSLWYFSHFGDKQDKKIAPET-----RRSIEVP 61
Query: 77 LIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAP 114
L E Q + + S ++ P+
Sbjct: 62 LNERICLQVGSQCSTNES-EKPSILVEKCISPPEGDPE 98
|
| >3bpo_C Interleukin-13 receptor alpha-1 chain; IL4, IL13, IL4R, IL13R, cytokine, glycoprotein, IM response, membrane, phosphoprotein, secreted; HET: NAG; 3.00A {Homo sapiens} PDB: 3bpn_C* Length = 314 | Back alignment and structure |
|---|
Score = 41.0 bits (95), Expect = 6e-04
Identities = 14/101 (13%), Positives = 32/101 (31%), Gaps = 15/101 (14%)
Query: 2 DHSVLIKNPFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEK 61
+++ +P P + + D + +QW P + + Y VE+ +
Sbjct: 188 SFNIVPLTSRVKPDPPHIKNLS-FHNDDLYVQWENPQNFISRCLF-YEVEVNNSQTETHN 245
Query: 62 AVVVPAGE-------------TSCTVPGLIEGETYQFQVRA 89
V + + VPG++ ++R
Sbjct: 246 VFYVQEAKCENPEFERNVENTSCFMVPGVLPDTLNTVRIRV 286
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 45.6 bits (108), Expect = 2e-05
Identities = 15/98 (15%), Positives = 31/98 (31%), Gaps = 4/98 (4%)
Query: 361 SIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKR 420
G+ TI + + + ++V G + N ++ K +
Sbjct: 252 KESAWEAHLGDTLTIRCDTKQQGMTKVWVSPSNEQVLSQGSNGSVSVRNGDLFFKKV--Q 309
Query: 421 ATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQGPLD 458
D G YT + +++ S ++ V G D
Sbjct: 310 VEDGGVYTCYAMGETFNETLSVELKVY--NFTLHGHHD 345
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 44.8 bits (106), Expect = 4e-05
Identities = 12/87 (13%), Positives = 27/87 (31%), Gaps = 4/87 (4%)
Query: 252 NAAGTEKPKISL----DALIGKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDM 307
+ K+ + + ++ + V+ L K +D G+Y A + +
Sbjct: 269 DTKQQGMTKVWVSPSNEQVLSQGSNGSVSVRNGDLFFKKVQVEDGGVYTCYAMGETFNET 328
Query: 308 ADIEVVVVSKPGPPTGPIDYTTVTPES 334
+E+ V + P S
Sbjct: 329 LSVELKVYNFTLHGHHDTLNAAADPWS 355
|
| >2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184 | Back alignment and structure |
|---|
Score = 43.8 bits (103), Expect = 3e-05
Identities = 24/179 (13%), Positives = 49/179 (27%), Gaps = 57/179 (31%)
Query: 272 KEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVT 331
+ L IKN +DS Y E ++ +++++V
Sbjct: 60 RSLWDQGNFPLIIKNLKIEDSDTYICEVEDQKE----EVQLLVFGLTANS---------- 105
Query: 332 PESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTV 391
D +L G+ T+T+ P+
Sbjct: 106 --------------------------------DTHLLQGQSLTLTLESPPGSSPSVQCR- 132
Query: 392 NGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKP 450
SP G+ +T+ ++ DSG++T ++ + V+
Sbjct: 133 -----SPRGKN---IQGGKTLSVSQL--ELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQ 181
|
| >2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184 | Back alignment and structure |
|---|
Score = 40.0 bits (93), Expect = 6e-04
Identities = 23/165 (13%), Positives = 54/165 (32%), Gaps = 20/165 (12%)
Query: 162 WVKLSEPFL--NHGWSINGQVCQIGGRADVQTTKSET---VLDIPFCSRSDTGHYSLTLE 216
W ++ + N G + ++ RAD + + + L I D+ Y +E
Sbjct: 29 WKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTYICEVE 88
Query: 217 NNLGTATASAHVTGTEFTDNNVHEGKAYEYRVSAV---NAAGTEKPKISLDALIGKRIKE 273
+ T +D ++ +G+ S + P + + +
Sbjct: 89 DQKEEVQLL-VFGLTANSDTHLLQGQ------SLTLTLESPPGSSPSVQC-----RSPRG 136
Query: 274 FVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKP 318
+L++ +DSG + + I++VV++
Sbjct: 137 KNIQGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQ 181
|
| >1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion; 2.40A {Homo sapiens} Length = 145 | Back alignment and structure |
|---|
Score = 43.2 bits (101), Expect = 3e-05
Identities = 25/119 (21%), Positives = 36/119 (30%), Gaps = 9/119 (7%)
Query: 344 DDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIW--------TVNGDE 395
DD + S D TV+AG + + W
Sbjct: 27 DDKAMADINLSQDDSQPWTSDETVVAGGTVVLKCQVKDHEDSSLQWSNPAQQTLYFGEKR 86
Query: 396 VSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQ 454
D RI+ TS + + S D G YT + T+ +A V V+ P P
Sbjct: 87 ALRDNRIQLVTSTPHELSISISNVALADEGEYTCS-IFTMPVRTAKSLVTVLGIPQKPI 144
|
| >2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} Length = 250 | Back alignment and structure |
|---|
Score = 44.5 bits (104), Expect = 3e-05
Identities = 26/185 (14%), Positives = 47/185 (25%), Gaps = 29/185 (15%)
Query: 274 FVTSTTASLNIKNSVRKDSGIYK-----IEAKNDYGIDMADIEVVVVSKPGPPTGPIDYT 328
+L + + +D G Y + ++G+D + + V
Sbjct: 84 VANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHTPSNN----VH 139
Query: 329 TVTPESVSMSWKPPVDDGGT-----PITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRP 383
T E V VD+G P T E T +
Sbjct: 140 VSTAEVVQ------VDEGNDITMTCPCTDCANANVTWYTGPTFFENYETGTYQPLANKNQ 193
Query: 384 KPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCK 443
S + + S + + A + TD+G +L G A
Sbjct: 194 FGI-------TWFSSEIAGRASFSGARNLV--IRAAKITDAGRVWCELATGQGELDADRS 244
Query: 444 VYVVD 448
++
Sbjct: 245 STILK 249
|
| >3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens} Length = 124 | Back alignment and structure |
|---|
Score = 42.7 bits (100), Expect = 3e-05
Identities = 16/108 (14%), Positives = 30/108 (27%), Gaps = 11/108 (10%)
Query: 354 PKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIW--------TVNGDEVSPDGRIKFE 405
+T+ +TV G+ T+ S R + W +N V + + +
Sbjct: 2 GSLTN--HTETITVEEGQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLL 59
Query: 406 TSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPP 453
+ D G Y + + KV V+
Sbjct: 60 HHSANQLSITVPNVTLQDEGVYKCL-HYSDSVSTKEVKVIVLATMKGE 106
|
| >3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331 | Back alignment and structure |
|---|
Score = 45.1 bits (106), Expect = 3e-05
Identities = 31/289 (10%), Positives = 69/289 (23%), Gaps = 62/289 (21%)
Query: 189 VQTTKSETVLDIPFCSRSDTGHYSLTLENN-LGTATASAHVT-------GTEFTDNNVHE 240
++ + ++ + + D G Y G + ++T E T +
Sbjct: 85 LRPSFTDGTIRLSRLELEDEGVYICEFATFPTGNRESQLNLTVMAKPTNWIEGTQAVLRA 144
Query: 241 GKAYEYRVSAVN---AAGTEKPKIS-------LDALIGKRIKEFVTSTTASLNIKNSVRK 290
K + +V A G +S R + + + S
Sbjct: 145 KKGQDDKVLVATCTSANGKPPSVVSWETRLKGEAEYQEIRNPNGTVTVISRYRLVPSREA 204
Query: 291 DSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPI 350
+ + V +P T+
Sbjct: 205 HQQSLACIVNYHMDRFKESLTLNVQYEP--------EVTIEGFD---------------- 240
Query: 351 TGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPI-WTVNGDEVSPDGRIKFETSEN 409
L + +T P T WT + +N
Sbjct: 241 -------------GNWYLQRMDVKLTCKADANPPATEYHWTTLNGSLPKGVEA-----QN 282
Query: 410 QTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQGPLD 458
+T++ + +G+Y + N +G+ S +V + + +
Sbjct: 283 RTLFFKGPINY-SLAGTYICEATNPIGTRSGQVEVNITEAAALEHHHHH 330
|
| >4doh_R Interleukin-20 receptor subunit alpha; IL10 family cytokine receptor complex, alpha helical cytokin beta sandwhich receptor fold, signaling complex; HET: NAG; 2.80A {Homo sapiens} Length = 221 | Back alignment and structure |
|---|
Score = 44.1 bits (103), Expect = 4e-05
Identities = 19/103 (18%), Positives = 33/103 (32%), Gaps = 6/103 (5%)
Query: 16 KPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDK-TGNWEKAVV---VPAGETS 71
KP ++ + +V LQWTPP G +T Y V+ W +
Sbjct: 11 KPANITFLSINMKNV-LQWTPPEGLQGVKVT-YTVQYFIYGQKKWLNKSECRNINRTYCD 68
Query: 72 CTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAP 114
+ Y +VRA+ + ++ + P
Sbjct: 69 LSAETSDYEHQYYARVRAIWGTKCSKWAESGRFYPFLETQIGP 111
|
| >2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} Length = 117 | Back alignment and structure |
|---|
Score = 42.1 bits (99), Expect = 4e-05
Identities = 26/106 (24%), Positives = 35/106 (33%), Gaps = 9/106 (8%)
Query: 353 APKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDG------RIKFET 406
P+I S D+ V GE T+ GRP PT W G+ V D R+ +
Sbjct: 9 PPRIVEHPS--DLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPS 66
Query: 407 SENQTIYRNKSAKRATDSGSYTIQLVNTVGSD-SASCKVYVVDKPS 451
+ K D G Y N +G S + V
Sbjct: 67 GSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAAAAH 112
|
| >3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262 | Back alignment and structure |
|---|
Score = 44.1 bits (104), Expect = 5e-05
Identities = 43/284 (15%), Positives = 76/284 (26%), Gaps = 66/284 (23%)
Query: 181 CQIGGRADVQTTK----------SETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVTG 230
C++ +T+ S I S +D+G Y + + +
Sbjct: 23 CEVLHLPGSSSTQWFLNGTATQTSTPSYRITSASVNDSGEYRCQRGLSGRSDPIQLEIHR 82
Query: 231 TEFT----DNNVHEGKAYEYRVSAVNAAGTEKPKISL--DALIGKRIKEFVTSTTASLNI 284
EG+ R A + + GK K F ++L I
Sbjct: 83 GWLLLQVSSRVFTEGEPLALRCHA--WKDKLVYNVLYYRN---GKAFKFF--HWNSNLTI 135
Query: 285 KNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVD 344
+ +G Y + A I V V P + S
Sbjct: 136 LKTNISHNGTYHCSGMGKHRYTSAGISVTVKELFPAP-----VLNASVTS---------- 180
Query: 345 DGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRP-KPTPIWTVNGDEVSPDGRIK 403
+L G T++ +P + S R +
Sbjct: 181 ---------------------PLLEGNLVTLSCETKLLLQRPGLQLYFSFYMGSKTLRGR 219
Query: 404 FETSENQTIYRNKSAKRATDSGSYTIQLVNTVGS-DSASCKVYV 446
+SE Y+ +A+R DSG Y + G+ S ++ +
Sbjct: 220 NTSSE----YQILTARRE-DSGLYWCEAATEDGNVLKRSPELEL 258
|
| >3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262 | Back alignment and structure |
|---|
Score = 42.2 bits (99), Expect = 2e-04
Identities = 25/183 (13%), Positives = 45/183 (24%), Gaps = 51/183 (27%)
Query: 273 EFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTP 332
++T S I ++ DSG Y+ + D +E+
Sbjct: 41 TATQTSTPSYRITSASVNDSGEYRCQRGLSGRSDPIQLEIHRGWLL-------------- 86
Query: 333 ESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTIT-VPFSGRPKPTPIWTV 391
L + GE + + + ++
Sbjct: 87 ---------------------------LQVSSRVFTEGEPLALRCHAWKDKLVYNVLYYR 119
Query: 392 NGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPS 451
NG F + N TI + +G+Y + SA V V +
Sbjct: 120 NGKAFKF-----FHWNSNLTI----LKTNISHNGTYHCSGMGKHRYTSAGISVTVKELFP 170
Query: 452 PPQ 454
P
Sbjct: 171 APV 173
|
| >3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A Length = 108 | Back alignment and structure |
|---|
Score = 41.1 bits (96), Expect = 7e-05
Identities = 16/97 (16%), Positives = 31/97 (31%), Gaps = 11/97 (11%)
Query: 363 RDMTVLAGEEFTITVPFSGRP---KPTPIWT--VNGDEVSPDG-RIKFETSENQTIYRNK 416
+D V G T + +G P W D S G ++ S ++
Sbjct: 12 QDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYL 71
Query: 417 S-----AKRATDSGSYTIQLVNTVGSDSASCKVYVVD 448
+ +GSY ++ D ++ + V +
Sbjct: 72 FELHITDAQPAFTGSYRCEVSTKDKFDCSNFNLTVHE 108
|
| >3se4_A Interferon alpha/beta receptor 1; type I interferon signaling complex, extracellular space, IM system receptor; HET: NAG; 3.50A {Homo sapiens} PDB: 3se3_A* Length = 414 | Back alignment and structure |
|---|
Score = 44.2 bits (103), Expect = 7e-05
Identities = 18/88 (20%), Positives = 32/88 (36%), Gaps = 8/88 (9%)
Query: 27 KDHVDLQWTPPISDGGSPIT-----GYVVEMKDKTGNWEKAVVVPAGETSCTVPGLIEGE 81
D + P G +P+ Y + + T N E+ ++ +T TVP L
Sbjct: 321 SDSFHIYIGAPKQSGNTPVIQDYPLIYEIIFWENTSNAERKIIEK--KTDVTVPNLKPLT 378
Query: 82 TYQFQVRAVNAAGP-GEASKPTAPIVAK 108
Y + RA ++S + + K
Sbjct: 379 VYCVKARAHTMDEKLNKSSVFSDAVCEK 406
|
| >3se4_A Interferon alpha/beta receptor 1; type I interferon signaling complex, extracellular space, IM system receptor; HET: NAG; 3.50A {Homo sapiens} PDB: 3se3_A* Length = 414 | Back alignment and structure |
|---|
Score = 43.1 bits (100), Expect = 1e-04
Identities = 38/287 (13%), Positives = 72/287 (25%), Gaps = 49/287 (17%)
Query: 16 KPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDK-TGNWEKAVV---VPAGETS 71
P +E D + + L+W G+ + + + NW K + + + +
Sbjct: 10 SPQKVEVDIIDDNFI-LRWNRSDESVGN--VTFSFDYQKTGMDNWIKLSGCQNITSTKCN 66
Query: 72 CTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAPRI--------------- 116
+ L E + ++RA + K + P +
Sbjct: 67 FSSLKLNVYEEIKLRIRAEKENTSSWYEVDSFTPFRKAQIGPPEVHLEAEDKAIVIHISP 126
Query: 117 -----------DRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRA-----LGVRANSTK 160
S + I S + E + L L V+A
Sbjct: 127 GTKDSVMWALDGLSFTYSLVIWKNSSGVEERIENIYSRHKIYKLSPETTYCLKVKAALLT 186
Query: 161 GWVKLSEPFLNHGWSINGQVCQIGGRADVQTTKSETVL-------DIPFCSRSDTGHYSL 213
W ++ + +V VL ++ F +
Sbjct: 187 SWKIGVYSPVHCIKTTVENELPPPENIEVSVQNQNYVLKWDYTYANMTFQVQWLHAFLKR 246
Query: 214 TLENNLGTATASAHVTGTEFTD----NNVHEGKAYEYRVSAVNAAGT 256
N+L + T NV + Y RV A + T
Sbjct: 247 NPGNHLYKWKQIPDCENVKTTQCVFPQNVFQKGIYLLRVQASDGNNT 293
|
| >3s98_A Interferon alpha/beta receptor 1; human, type I interferons, receptor chain, ifnar1, fibronect III, type I interferon receptor chain; HET: NAG; 1.90A {Homo sapiens} Length = 306 | Back alignment and structure |
|---|
Score = 43.8 bits (102), Expect = 8e-05
Identities = 38/287 (13%), Positives = 72/287 (25%), Gaps = 49/287 (17%)
Query: 16 KPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDK-TGNW-EKAVVVPAGETSC- 72
P +E D + + L+W G+ + + + NW + + T C
Sbjct: 6 SPQKVEVDIIDDNFI-LRWNRSDESVGN--VTFSFDYQKTGMDNWIKLSGCQNITSTKCN 62
Query: 73 -TVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAPRIDRSTLND---VKIKA 128
+ L E + ++RA + K + P + + + I
Sbjct: 63 FSSLKLNVYEEIKLRIRAEKENTSSWYEVDSFTPFRKAQIGPPEVHLEAEDKAIVIHISP 122
Query: 129 -----------GQSFSFDV------------KEFRELSYTKSPLRALG-----VRA--NS 158
G SF++ + E + L V+A +
Sbjct: 123 GTKDSVMWALDGLSFTYSLVIWKNSSGVEERIENIYSRHKIYKLSPETTYCLKVKAALLT 182
Query: 159 TKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLT---- 214
+ S N VQ D + + + +
Sbjct: 183 SWKIGVYSPVHCIKTTVENELPPPENIEVSVQNQNYVLKWDYTYANMTFQVQWLHAFLKR 242
Query: 215 ----LENNLGTATASAHVTGTEFT-DNNVHEGKAYEYRVSAVNAAGT 256
+V T+ NV + Y RV A + T
Sbjct: 243 NPGNHLYKWKQIPDCENVKTTQCVFPQNVFQKGIYLLRVQASDGNNT 289
|
| >3s98_A Interferon alpha/beta receptor 1; human, type I interferons, receptor chain, ifnar1, fibronect III, type I interferon receptor chain; HET: NAG; 1.90A {Homo sapiens} Length = 306 | Back alignment and structure |
|---|
Score = 43.0 bits (100), Expect = 1e-04
Identities = 15/79 (18%), Positives = 27/79 (34%), Gaps = 6/79 (7%)
Query: 32 LQWTPPISDGGSPITGYVVEMKDKTGN-WEKAVVVPAGE----TSCTVP-GLIEGETYQF 85
L+W ++ + +K GN K +P E T C P + + Y
Sbjct: 220 LKWDYTYANMTFQVQWLHAFLKRNPGNHLYKWKQIPDCENVKTTQCVFPQNVFQKGIYLL 279
Query: 86 QVRAVNAAGPGEASKPTAP 104
+V+A + S+
Sbjct: 280 RVQASDGNNTSFWSEEIKF 298
|
| >2dle_A Receptor-type tyrosine-protein phosphatase ETA; protein-tyrosine phosphatase ETA, R-PTP-ETA, HPTP ETA, protein-tyrosine phosphatase receptor type J; NMR {Homo sapiens} Length = 104 | Back alignment and structure |
|---|
Score = 40.8 bits (95), Expect = 1e-04
Identities = 20/101 (19%), Positives = 35/101 (34%), Gaps = 8/101 (7%)
Query: 14 PGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVVVPAGETSCT 73
+ D+ A + + L W ++ S T Y + + +T + + E
Sbjct: 8 AIQVFDVTAVNISATSLTLIWKVSDNESSSNYT-YKIHVAGETDSSN----LNVSEPRAV 62
Query: 74 VPGLIEGETYQFQVRAVNAAG---PGEASKPTAPIVAKPKN 111
+PGL Y V V PG T P+ + P +
Sbjct: 63 IPGLRSSTFYNITVCPVLGDIEGTPGFLQVHTPPVPSGPSS 103
|
| >4doh_B Interleukin-20 receptor subunit beta; IL10 family cytokine receptor complex, alpha helical cytokin beta sandwhich receptor fold, signaling complex; HET: NAG; 2.80A {Homo sapiens} Length = 206 | Back alignment and structure |
|---|
Score = 42.4 bits (99), Expect = 1e-04
Identities = 11/71 (15%), Positives = 22/71 (30%), Gaps = 1/71 (1%)
Query: 38 ISDGGSPITGYVVEMKDKTGNWEKAVVVPAGETSCTVPGLIEGETYQFQVRAVNAAGPGE 97
+ D G V + + G E +V +G + + G Y + + G
Sbjct: 128 LEDLGPQFEFLVAYWRREPGAEEHVKMVRSGGIPVHLETMEPGAAYCVKAQTFV-KAIGR 186
Query: 98 ASKPTAPIVAK 108
S + +
Sbjct: 187 YSAFSQTECVE 197
|
| >1wft_A 1700129L13RIK protein; FN3 domain, similar to HOST cell factor 2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.1.2.1 Length = 123 | Back alignment and structure |
|---|
Score = 41.1 bits (95), Expect = 1e-04
Identities = 24/103 (23%), Positives = 39/103 (37%), Gaps = 18/103 (17%)
Query: 14 PGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKA-------VVVP 66
PG P+ + + + D + L W PP S G I Y + +T + +
Sbjct: 8 PGAPSTVRISK-NVDGIHLSWEPPTSPSG-NILEYSAYLAIRTAQMQDNPSQLVFMRIYC 65
Query: 67 AGETSCTVPGLIEGETYQ---------FQVRAVNAAGPGEASK 100
+TSCTV + F++ A N G G A++
Sbjct: 66 GLKTSCTVTAGQLANAHIDYTSRPAIVFRISAKNEKGYGPATQ 108
|
| >1axi_B HGHBP, growth hormone receptor; complex (hormone-receptor), complex (hormone-receptor) compl; 2.10A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1a22_B 1kf9_B 1hwg_B 1hwh_B 3hhr_B 2aew_A Length = 236 | Back alignment and structure |
|---|
Score = 42.1 bits (98), Expect = 2e-04
Identities = 17/93 (18%), Positives = 34/93 (36%), Gaps = 7/93 (7%)
Query: 1 MDHSVLIKNPFDEPGKPTDLEATDWDKDHVDLQWTPPIS---DGGSPITGYVVEMKD-KT 56
+D V P ++ T + ++W P + G + Y ++ K+
Sbjct: 125 VDEIVQPDPPIALNWTLLNVSLTG-IHADIQVRWEAPRNADIQKGWMVLEYELQYKEVNE 183
Query: 57 GNWEKAVVVPAGETSCTVPGLIEGETYQFQVRA 89
W+ + TS V L + Y+ +VR+
Sbjct: 184 TKWKMMDPIL--TTSVPVYSLKVDKEYEVRVRS 214
|
| >3tgx_A Interleukin-21 receptor; class I cytokine, class I cytokine receptor, sugarbridge, fibronectine domain, signaling, cytokine-cytokine receptor; HET: MAN FUL NAG BMA FUC; 2.80A {Homo sapiens} Length = 219 | Back alignment and structure |
|---|
Score = 41.7 bits (97), Expect = 2e-04
Identities = 16/93 (17%), Positives = 30/93 (32%), Gaps = 11/93 (11%)
Query: 14 PGKPTDLEATDWDKDHVDLQWTPPISDGGSPITG----YVVEMKDKTGNWEKA-----VV 64
P P D+ T + W D + Y ++ +++ W + +
Sbjct: 101 PAPPFDVTVTF--SGQYQISWRSDYEDPAFYMLKGKLQYELQYRNRGDPWAVSPRRKLIS 158
Query: 65 VPAGETSCTVPGLIEGETYQFQVRAVNAAGPGE 97
V + S + +Y+ QVRA G
Sbjct: 159 VDSRSVSLLPLEFRKDSSYELQVRAGPMPGSSY 191
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 42.4 bits (100), Expect = 2e-04
Identities = 22/109 (20%), Positives = 38/109 (34%), Gaps = 16/109 (14%)
Query: 353 APKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEV----SPDGRIKFETSE 408
AP I + RD+ + G + P + W + V S RI
Sbjct: 352 APFIMD--APRDLNISEGR--MAELKCRTPPMSSVKWLLPNGTVLSHASRHPRIS--VLN 405
Query: 409 NQTIY-RNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQGP 456
+ T+ + +D+G YT + N G+ +AS + V +
Sbjct: 406 DGTLNFSHVLL---SDTGVYTCMVTNVAGNSNASAYLNV--STAGTHHH 449
|
| >1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A Length = 202 | Back alignment and structure |
|---|
Score = 40.9 bits (95), Expect = 3e-04
Identities = 13/96 (13%), Positives = 27/96 (28%), Gaps = 4/96 (4%)
Query: 365 MTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDS 424
G+ ++T +G P W + +G++ E + + +
Sbjct: 11 YLAQIGDSVSLTCSTTGCESPFFSWR-TQIDSPLNGKVTNEGTTSTLTMNP---VSFGNE 66
Query: 425 GSYTIQLVNTVGSDSASCKVYVVDKPSPPQGPLDVS 460
SY +V + P P+ L
Sbjct: 67 HSYLCTATCESRKLEKGIQVEIYSFPKDPEIHLSGP 102
|
| >1uc6_A CNTF receptor, ciliary neurotrophic factor receptor alpha; cytokine, leukemia inhibitory factor, cytokine receptor; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 109 | Back alignment and structure |
|---|
Score = 38.8 bits (90), Expect = 5e-04
Identities = 17/93 (18%), Positives = 32/93 (34%), Gaps = 6/93 (6%)
Query: 20 LEATDWDKDHVDLQWTPPIS--DGGSPITGYVVEMKDK-TGNWEKAVVVPAGETSCTVPG 76
+ +++ W P + D S + + + W+ V + T+ T+
Sbjct: 16 ARPVPSNPRRLEVTWQTPSTWPDPESFPLKFFLRYRPLILDQWQH--VELSNGTAHTITD 73
Query: 77 LIEGETYQFQVRAVNAAGPGEASKPTAPIVAKP 109
G+ Y QV A + G S + A P
Sbjct: 74 AYAGKEYIIQVAAKD-NEIGTWSDWSVAAHATP 105
|
| >3up1_A Interleukin-7 receptor subunit alpha; cytokine receptor, fibronectin type 3 fold, membrane and SOL glycosylation, immune system; HET: NAG FUC NGA; 2.15A {Homo sapiens} PDB: 3di3_B* 3di2_B* Length = 223 | Back alignment and structure |
|---|
Score = 40.2 bits (93), Expect = 6e-04
Identities = 11/79 (13%), Positives = 26/79 (32%), Gaps = 3/79 (3%)
Query: 14 PGKPTDLEATDW-DKDHVDLQWTPP-ISDGGSPITGYVVEMKDKTG-NWEKAVVVPAGET 70
P P DL + + + + + + V + + N V + + +
Sbjct: 113 PEAPFDLSVVYREGANDFVVTFNTSHLQKKYVKVLMHDVAYRQEKDENKWTHVNLSSTKL 172
Query: 71 SCTVPGLIEGETYQFQVRA 89
+ L Y+ +VR+
Sbjct: 173 TLLQRKLQPAAMYEIKVRS 191
|
| >1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302 | Back alignment and structure |
|---|
Score = 40.9 bits (95), Expect = 7e-04
Identities = 34/231 (14%), Positives = 57/231 (24%), Gaps = 71/231 (30%)
Query: 280 ASLNIKNSVRKDSGIYKIEAKND-YGIDMADIEVVVVSKPGPPTGPIDYT-----TVTPE 333
ASL + +D G Y G DI + V++KP
Sbjct: 79 ASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKPQNTAEVQKVQLTGEPVPMAR 138
Query: 334 SVSMSWKPPVD----DGGTPITGAPK----------ITSDLSIR---------------- 363
VS +PP + + +TS +
Sbjct: 139 CVSTGGRPPAQITWHSDLGGMPNTSQVPGFLSGTVTVTSLWILVPSSQVDGKNVTCKVEH 198
Query: 364 ---------------------------DMTVLAGEEFTITVPFSGRPKPTPI-WTVNGDE 395
+ L E T+T P+PT W+
Sbjct: 199 ESFEKPQLLTVNLTVYYPPEVSISGYDNNWYLGQNEATLTCDARSNPEPTGYNWSTTMGP 258
Query: 396 VSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYV 446
+ P F ++ + K + + + N +G+ A V V
Sbjct: 259 LPP-----FAVAQGAQLLIRPVDK--PINTTLICNVTNALGARQAELTVQV 302
|
| >3dlq_R Interleukin-22 receptor subunit alpha-1; cytokine-receptor complex, fibronectin-III, cytokine, glycoprotein, polymorphism, secreted, membrane; 1.90A {Homo sapiens} PDB: 3dgc_R* Length = 211 | Back alignment and structure |
|---|
Score = 40.1 bits (93), Expect = 7e-04
Identities = 21/89 (23%), Positives = 33/89 (37%), Gaps = 7/89 (7%)
Query: 10 PFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKD-KTGNW-EKAVVVPA 67
P D ++ + +++ L W G+P T Y +E K +W K
Sbjct: 1 PEDPSDLLQHVKFQSSNFENI-LTWDSG--PEGTPDTVYSIEYKTYGERDWVAKKGCQRI 57
Query: 68 GETSCTVPGLIE--GETYQFQVRAVNAAG 94
SC + E Y +V AV+A G
Sbjct: 58 TRKSCNLTVETGNLTELYYARVTAVSAGG 86
|
| >1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4 Length = 98 | Back alignment and structure |
|---|
Score = 37.9 bits (88), Expect = 8e-04
Identities = 20/95 (21%), Positives = 34/95 (35%), Gaps = 7/95 (7%)
Query: 353 APKITSDLSIRDMTVLAGEEFTIT-VPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQT 411
P + + R +V G + T S P T +WT + P + F T
Sbjct: 8 KPIMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAMDFNGI--LT 65
Query: 412 IYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYV 446
I + +D+G+Y N D + ++V
Sbjct: 66 IRN----VQPSDAGTYVCTGSNMFAMDQGTATLHV 96
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 516 | |||
| 3b43_A | 570 | Titin; I-SET IG fold, extended poly-IG filament, e | 100.0 | |
| 3b43_A | 570 | Titin; I-SET IG fold, extended poly-IG filament, e | 100.0 | |
| 2jll_A | 389 | NCAM2, neural cell adhesion molecule 2; immunoglob | 100.0 | |
| 2rik_A | 284 | Titin; I-SET IG fold, poly-IG linear array, struct | 99.98 | |
| 3kld_A | 384 | Contactin 4, axcam, BIG-2; cell adhesion, protein | 99.97 | |
| 3laf_A | 403 | Deleted in colorectal cancer; netrin-1 receptor, i | 99.97 | |
| 1cs6_A | 382 | Axonin-1; neural cell adhesion, cell adhesion; 1.8 | 99.97 | |
| 2ocw_A | 585 | Polymeric-immunoglobulin receptor; SC, secretory, | 99.96 | |
| 1e07_A | 642 | Carcinoembryonic antigen; glycoprotein, CEA, tumou | 99.96 | |
| 2ec8_A | 524 | MAST/stem cell growth factor receptor; glycoprotei | 99.96 | |
| 1bih_A | 395 | Hemolin; insect immunity, LPS-binding, homophilic | 99.96 | |
| 2v5m_A | 388 | Dscam; neurobiology SPL immunoglobulin domain, cel | 99.96 | |
| 3p3y_A | 404 | Neurofascin; IG domains, cell adhesion; HET: NAG; | 99.96 | |
| 1e07_A | 642 | Carcinoembryonic antigen; glycoprotein, CEA, tumou | 99.96 | |
| 3dmk_A | 816 | DOWN syndrome cell adhesion molecule (dscam) ISOF | 99.96 | |
| 2y25_A | 317 | Myomesin; structural protein, sarcomere, M-BAND, i | 99.95 | |
| 2ec8_A | 524 | MAST/stem cell growth factor receptor; glycoprotei | 99.95 | |
| 3dmk_A | 816 | DOWN syndrome cell adhesion molecule (dscam) ISOF | 99.95 | |
| 2rcj_C | 523 | Light chain; immunoglobulin M, polymeric antibodie | 99.95 | |
| 2wim_A | 291 | N-CAM 2, NCAM2, neural cell adhesion molecule 2; c | 99.95 | |
| 1z7z_I | 450 | Intercellular adhesion molecule-1; ICAM-1,kilifi,C | 99.95 | |
| 2yd9_A | 304 | Receptor-type tyrosine-protein phosphatase S; hydr | 99.95 | |
| 2nzi_A | 305 | Titin; IG-domain, FNIII-domain, transferase; 2.90A | 99.95 | |
| 2ocw_A | 585 | Polymeric-immunoglobulin receptor; SC, secretory, | 99.95 | |
| 3qs9_E | 527 | FL cytokine receptor; immunoglobulin-like domain, | 99.95 | |
| 1qz1_A | 291 | Neural cell adhesion molecule 1, 140 kDa isoform; | 99.95 | |
| 3qs7_E | 423 | FL cytokine receptor; immunoglobulin-like domain, | 99.94 | |
| 3qs7_E | 423 | FL cytokine receptor; immunoglobulin-like domain, | 99.94 | |
| 3qs9_E | 527 | FL cytokine receptor; immunoglobulin-like domain, | 99.94 | |
| 2y23_A | 312 | Myomesin; structural protein, sarcomere, M-BAND, i | 99.93 | |
| 1ry7_B | 334 | FGFR-3, fibroblast growth factor receptor 3; FGF-F | 99.93 | |
| 1wio_A | 363 | CD4, T-cell surface glycoprotein CD4; immunoglobul | 99.93 | |
| 1qgc_4 | 438 | Protein (immunoglobulin); virus-antibody complex, | 99.93 | |
| 1bih_A | 395 | Hemolin; insect immunity, LPS-binding, homophilic | 99.93 | |
| 1wio_A | 363 | CD4, T-cell surface glycoprotein CD4; immunoglobul | 99.93 | |
| 2jll_A | 389 | NCAM2, neural cell adhesion molecule 2; immunoglob | 99.93 | |
| 2o26_X | 290 | MAST/stem cell growth factor receptor; stem cell f | 99.92 | |
| 3p3y_A | 404 | Neurofascin; IG domains, cell adhesion; HET: NAG; | 99.92 | |
| 1z7z_I | 450 | Intercellular adhesion molecule-1; ICAM-1,kilifi,C | 99.92 | |
| 1zlg_A | 680 | Anosmin 1; insulin-like growth factor receptor Cys | 99.92 | |
| 3rjd_A | 262 | High affinity immunoglobulin gamma FC receptor I; | 99.92 | |
| 2nzi_A | 305 | Titin; IG-domain, FNIII-domain, transferase; 2.90A | 99.91 | |
| 3laf_A | 403 | Deleted in colorectal cancer; netrin-1 receptor, i | 99.91 | |
| 3ejj_X | 289 | Macrophage colony-stimulating factor 1 receptor; g | 99.91 | |
| 3kld_A | 384 | Contactin 4, axcam, BIG-2; cell adhesion, protein | 99.91 | |
| 4fqp_A | 313 | Poliovirus receptor; immunoglobulin-like domain, I | 99.91 | |
| 3oq3_B | 329 | IFN-alpha/beta binding protein C12R; mousepox viru | 99.91 | |
| 3mjg_X | 289 | Beta-type platelet-derived growth factor receptor; | 99.91 | |
| 4fom_A | 308 | Poliovirus receptor-related protein 3; immunoglobu | 99.91 | |
| 1itb_B | 315 | Type 1 interleukin-1 receptor; immunoglobulin fold | 99.91 | |
| 3u83_A | 331 | Poliovirus receptor-related protein 1; nectin-1, h | 99.91 | |
| 1cs6_A | 382 | Axonin-1; neural cell adhesion, cell adhesion; 1.8 | 99.91 | |
| 2rcj_C | 523 | Light chain; immunoglobulin M, polymeric antibodie | 99.91 | |
| 4dep_C | 349 | Interleukin-1 receptor accessory protein; B-trefoi | 99.91 | |
| 2v5m_A | 388 | Dscam; neurobiology SPL immunoglobulin domain, cel | 99.91 | |
| 3o4o_C | 339 | Interleukin-1 receptor type 2; cytokine-receptor c | 99.9 | |
| 3v2a_R | 772 | Vascular endothelial growth factor receptor 2; IG- | 99.9 | |
| 2oz4_A | 265 | Intercellular adhesion molecule 1; IGSF domain, st | 99.9 | |
| 4dkd_C | 292 | Macrophage colony-stimulating factor 1 receptor; d | 99.89 | |
| 3v2a_R | 772 | Vascular endothelial growth factor receptor 2; IG- | 99.89 | |
| 1iga_A | 475 | IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg | 99.89 | |
| 2rik_A | 284 | Titin; I-SET IG fold, poly-IG linear array, struct | 99.89 | |
| 2v5y_A | 731 | Receptor-type tyrosine-protein phosphatase MU; mem | 99.88 | |
| 1hzh_H | 457 | IGG, immunoglobulin heavy chain; antibody, immune | 99.88 | |
| 1fnf_A | 368 | Fibronectin; RGD, extracellular matrix, cell adhes | 99.88 | |
| 2wng_A | 327 | Tyrosine-protein phosphatase non-receptor type sub | 99.87 | |
| 3t1w_A | 375 | Four-domain fibronectin fragment; human fibronecti | 99.87 | |
| 3vh8_G | 316 | Killer cell immunoglobulin-like receptor 3DL1; imm | 99.87 | |
| 1igt_B | 444 | IGG2A intact antibody - MAB231; intact immunoglobu | 99.87 | |
| 1qgc_4 | 438 | Protein (immunoglobulin); virus-antibody complex, | 99.86 | |
| 2v5y_A | 731 | Receptor-type tyrosine-protein phosphatase MU; mem | 99.86 | |
| 2j8h_A | 197 | Titin, connectin; cardiomyopathy, nuclear protein, | 99.85 | |
| 3lcy_A | 197 | Titin; A-BAND, IG tandem domains, ATP-binding, cal | 99.85 | |
| 1igy_B | 434 | IGG1 intact antibody MAB61.1.3; intact immunoglobu | 99.84 | |
| 2y25_A | 317 | Myomesin; structural protein, sarcomere, M-BAND, i | 99.84 | |
| 1qz1_A | 291 | Neural cell adhesion molecule 1, 140 kDa isoform; | 99.84 | |
| 2wim_A | 291 | N-CAM 2, NCAM2, neural cell adhesion molecule 2; c | 99.83 | |
| 2a38_A | 194 | Titin; Z1Z2, structural protein; 2.00A {Homo sapie | 99.83 | |
| 2y23_A | 312 | Myomesin; structural protein, sarcomere, M-BAND, i | 99.83 | |
| 2yd9_A | 304 | Receptor-type tyrosine-protein phosphatase S; hydr | 99.82 | |
| 3l5h_A | 589 | Interleukin-6 receptor subunit beta; IG-like, FNII | 99.82 | |
| 2yd6_A | 212 | PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa | 99.81 | |
| 2yd1_A | 212 | Tyrosine-protein phosphatase LAR; hydrolase; 1.80A | 99.81 | |
| 1zvo_C | 512 | Myeloma immunoglobulin D delta; immunoglobulin fol | 99.8 | |
| 1igt_B | 444 | IGG2A intact antibody - MAB231; intact immunoglobu | 99.8 | |
| 3uto_A | 573 | Twitchin; kinase, muscle sarcomere, transferase; H | 99.8 | |
| 2va4_A | 192 | NCAM2, N-CAM 2, neural cell adhesion molecule 2; t | 99.8 | |
| 4fom_A | 308 | Poliovirus receptor-related protein 3; immunoglobu | 99.79 | |
| 1ry7_B | 334 | FGFR-3, fibroblast growth factor receptor 3; FGF-F | 99.79 | |
| 2o26_X | 290 | MAST/stem cell growth factor receptor; stem cell f | 99.79 | |
| 2wv3_A | 190 | Neuroplastin; igcam, membrane, glycoprotein, cell | 99.79 | |
| 1za6_B | 344 | IGG heavy chain; immunoglobulin fold, CH2-domain-d | 99.78 | |
| 2iep_A | 192 | Muscle-specific kinase receptor; beta-sandwich, si | 99.77 | |
| 4fqp_A | 313 | Poliovirus receptor; immunoglobulin-like domain, I | 99.77 | |
| 2wqr_A | 323 | IG epsilon chain C region; immune system, immunogl | 99.77 | |
| 1iga_A | 475 | IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg | 99.77 | |
| 3ejj_X | 289 | Macrophage colony-stimulating factor 1 receptor; g | 99.76 | |
| 1hzh_H | 457 | IGG, immunoglobulin heavy chain; antibody, immune | 99.76 | |
| 4fa8_A | 203 | Secreted protein BARF1; immunoglobulin-like domain | 99.76 | |
| 3grw_A | 241 | Fibroblast growth factor receptor 3; FGFR3, protei | 99.75 | |
| 3ojm_B | 231 | Fibroblast growth factor receptor 2; beta trefoil | 99.75 | |
| 3rbs_A | 207 | Myomesin-1; immunoglobulin C-SET domain, contractI | 99.75 | |
| 2v44_A | 189 | NCAM2, neural cell adhesion molecule 2; phosphoryl | 99.75 | |
| 2v5t_A | 189 | NCAM2, N-CAM 2, neural cell adhesion molecule 2; p | 99.75 | |
| 2c5d_C | 195 | AXL oncogene, tyrosine-protein kinase receptor UFO | 99.75 | |
| 1itb_B | 315 | Type 1 interleukin-1 receptor; immunoglobulin fold | 99.74 | |
| 1rhf_A | 182 | Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 | 99.74 | |
| 3r8q_A | 290 | Fibronectin; heparin, FNIII, heparin binding, cell | 99.74 | |
| 4fa8_A | 203 | Secreted protein BARF1; immunoglobulin-like domain | 99.74 | |
| 3rjd_A | 262 | High affinity immunoglobulin gamma FC receptor I; | 99.74 | |
| 3s97_C | 201 | Contactin-1; carbonic anhdyrase like immunoglobuli | 99.74 | |
| 3oq3_B | 329 | IFN-alpha/beta binding protein C12R; mousepox viru | 99.74 | |
| 1tdq_A | 283 | Tenascin-R; extracellular matrix, lecticans, tenas | 99.74 | |
| 3mtr_A | 215 | N-CAM-1, NCAM-1, neural cell adhesion molecule 1; | 99.74 | |
| 1igy_B | 434 | IGG1 intact antibody MAB61.1.3; intact immunoglobu | 99.74 | |
| 4dep_C | 349 | Interleukin-1 receptor accessory protein; B-trefoi | 99.74 | |
| 2r15_A | 212 | Myomesin-1; sarcomeric protein, IG-like domains, h | 99.73 | |
| 2q7n_A | 488 | Leukemia inhibitory factor receptor; cytokine cell | 99.72 | |
| 2r15_A | 212 | Myomesin-1; sarcomeric protein, IG-like domains, h | 99.72 | |
| 3rbs_A | 207 | Myomesin-1; immunoglobulin C-SET domain, contractI | 99.72 | |
| 1epf_A | 191 | NCAM, protein (neural cell adhesion molecule); imm | 99.72 | |
| 3mjg_X | 289 | Beta-type platelet-derived growth factor receptor; | 99.72 | |
| 2vr9_A | 217 | Roundabout 1, ROBO; immunoglobulin-like domain, AX | 99.72 | |
| 3u83_A | 331 | Poliovirus receptor-related protein 1; nectin-1, h | 99.71 | |
| 3bp6_B | 202 | Programmed cell death 1 ligand 2; PD-1, PD-L2, com | 99.71 | |
| 2v9r_A | 212 | Roundabout homolog 1; proto-oncogene, differentiat | 99.71 | |
| 4dkd_C | 292 | Macrophage colony-stimulating factor 1 receptor; d | 99.71 | |
| 3l5h_A | 589 | Interleukin-6 receptor subunit beta; IG-like, FNII | 99.7 | |
| 2ny1_B | 184 | T-cell surface glycoprotein CD4; HIV, GP120, CD4, | 99.69 | |
| 2wng_A | 327 | Tyrosine-protein phosphatase non-receptor type sub | 99.69 | |
| 3sgj_C | 204 | Human FCG3A receptor; receptor complex, FC recepto | 99.69 | |
| 1zlg_A | 680 | Anosmin 1; insulin-like growth factor receptor Cys | 99.69 | |
| 1f97_A | 212 | Junction adhesion molecule; immunoglobulin superfa | 99.68 | |
| 3vh8_G | 316 | Killer cell immunoglobulin-like receptor 3DL1; imm | 99.68 | |
| 1i1r_A | 303 | GP130, interleukin-6 receptor beta chain; cytokine | 99.68 | |
| 3k0w_A | 218 | Mucosa-associated lymphoid tissue lymphoma translo | 99.68 | |
| 1zvo_C | 512 | Myeloma immunoglobulin D delta; immunoglobulin fol | 99.67 | |
| 1fnf_A | 368 | Fibronectin; RGD, extracellular matrix, cell adhes | 99.67 | |
| 1nbq_A | 209 | JAM, junctional adhesion molecule 1, PAM-1; reovir | 99.67 | |
| 3b5h_A | 184 | Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce | 99.67 | |
| 2c1o_A | 254 | IGK-C protein; FAB fragment, enantioselective, fin | 99.66 | |
| 3o4o_C | 339 | Interleukin-1 receptor type 2; cytokine-receptor c | 99.66 | |
| 3t1w_A | 375 | Four-domain fibronectin fragment; human fibronecti | 99.66 | |
| 4f80_A | 226 | Butyrophilin subfamily 3 member A1; B7 superfamily | 99.66 | |
| 1f97_A | 212 | Junction adhesion molecule; immunoglobulin superfa | 99.66 | |
| 1vca_A | 202 | VCAM-D1,2, human vascular cell adhesion molecule-1 | 99.65 | |
| 1f2q_A | 176 | High affinity immunoglobulin epsilon receptor ALP | 99.65 | |
| 2dtg_E | 897 | Insulin receptor; IR ectodomain, X-RAY crystallogr | 99.64 | |
| 3jz7_A | 214 | MCAR, CAR, coxsackievirus and adenovirus receptor | 99.64 | |
| 3jz7_A | 214 | MCAR, CAR, coxsackievirus and adenovirus receptor | 99.64 | |
| 1fnl_A | 175 | Low affinity immunoglobulin gamma FC region recept | 99.64 | |
| 1ugn_A | 198 | LIR1, leukocyte immunoglobulin-like receptor 1; im | 99.64 | |
| 3l5i_A | 290 | Interleukin-6 receptor subunit beta; cytokine rece | 99.64 | |
| 3mtr_A | 215 | N-CAM-1, NCAM-1, neural cell adhesion molecule 1; | 99.64 | |
| 4frw_A | 218 | Poliovirus receptor-related protein 4; immunoglobu | 99.63 | |
| 3bp6_B | 202 | Programmed cell death 1 ligand 2; PD-1, PD-L2, com | 99.63 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 99.63 | |
| 1hng_A | 176 | CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra | 99.63 | |
| 1uct_A | 218 | Immunoglobulin alpha FC receptor; beta stands, imm | 99.63 | |
| 2oz4_A | 265 | Intercellular adhesion molecule 1; IGSF domain, st | 99.63 | |
| 2ny1_B | 184 | T-cell surface glycoprotein CD4; HIV, GP120, CD4, | 99.62 | |
| 3p2t_A | 196 | Leukocyte immunoglobulin-like receptor subfamily 4 | 99.62 | |
| 3p2t_A | 196 | Leukocyte immunoglobulin-like receptor subfamily 4 | 99.61 | |
| 3sbw_C | 222 | Programmed cell death 1 ligand 1; PD-1, PD-L1, B7- | 99.61 | |
| 3r4d_A | 208 | CEA-related cell adhesion molecule 1, isoform 1/2; | 99.61 | |
| 2x1w_L | 213 | Vascular endothelial growth factor receptor 2; hor | 99.61 | |
| 3sgj_C | 204 | Human FCG3A receptor; receptor complex, FC recepto | 99.6 | |
| 2x1w_L | 213 | Vascular endothelial growth factor receptor 2; hor | 99.6 | |
| 3ry4_A | 170 | Low affinity immunoglobulin gamma FC region recep; | 99.6 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 99.6 | |
| 1oll_A | 188 | NK receptor; immune system/receptor, NK cell trigg | 99.59 | |
| 3lpw_A | 197 | A77-A78 domain from titin; intracellular FNIII-tan | 99.59 | |
| 2fbo_J | 250 | V1V2;, variable region-containing chitin-binding p | 99.59 | |
| 3b5h_A | 184 | Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce | 99.59 | |
| 2d3v_A | 196 | Leukocyte immunoglobulin-like receptor subfamily A | 99.58 | |
| 2d3v_A | 196 | Leukocyte immunoglobulin-like receptor subfamily A | 99.58 | |
| 2vkw_A | 209 | Neural cell adhesion molecule 1,140 kDa isoform; a | 99.57 | |
| 1vca_A | 202 | VCAM-D1,2, human vascular cell adhesion molecule-1 | 99.57 | |
| 3se4_A | 414 | Interferon alpha/beta receptor 1; type I interfero | 99.57 | |
| 2ghw_B | 247 | Anti-SARS SCFV antibody, 80R; S protein, neutraliz | 99.56 | |
| 2gi7_A | 184 | GPVI protein; IG-like domains, blood clotting, cel | 99.56 | |
| 1fnl_A | 175 | Low affinity immunoglobulin gamma FC region recept | 99.55 | |
| 4i0k_A | 222 | CD276 antigen; immunoglobulin domain, glycoprotein | 99.55 | |
| 3mj8_L | 213 | Stimulatory hamster antibody HL4E10 FAB light CHA; | 99.54 | |
| 3mj6_A | 268 | Junctional adhesion molecule-like; immunoglobulin | 99.54 | |
| 1f3r_B | 257 | FV antibody fragment; IG-fold, immuno complex, ant | 99.54 | |
| 1f3r_B | 257 | FV antibody fragment; IG-fold, immuno complex, ant | 99.54 | |
| 1x5y_A | 111 | Myosin binding protein C, fast-type; fast MYBP-C, | 99.54 | |
| 2d9q_B | 313 | Granulocyte colony-stimulating factor receptor; cy | 99.53 | |
| 3mj6_A | 268 | Junctional adhesion molecule-like; immunoglobulin | 99.53 | |
| 3s96_B | 218 | 3B5H10 FAB light chain; huntingtin, immune system; | 99.52 | |
| 3knb_B | 107 | Obscurin-like protein 1; IG-like, titin, OBSL1, AT | 99.52 | |
| 2pet_A | 231 | Lutheran blood group glycoprotein; immunoglobulin | 99.52 | |
| 3r4d_A | 208 | CEA-related cell adhesion molecule 1, isoform 1/2; | 99.52 | |
| 3d9a_L | 213 | Light chain of hyhel10 antibody fragment (FAB); ly | 99.52 | |
| 3pv7_A | 248 | B7-H6, IG-like domain-containing protein DKFZP686O | 99.52 | |
| 2fbo_J | 250 | V1V2;, variable region-containing chitin-binding p | 99.51 | |
| 2d9q_B | 313 | Granulocyte colony-stimulating factor receptor; cy | 99.51 | |
| 2j8h_A | 197 | Titin, connectin; cardiomyopathy, nuclear protein, | 99.51 | |
| 2gi7_A | 184 | GPVI protein; IG-like domains, blood clotting, cel | 99.51 | |
| 1nqb_A | 256 | Single-chain antibody fragment; multivalent antibo | 99.51 | |
| 2ghw_B | 247 | Anti-SARS SCFV antibody, 80R; S protein, neutraliz | 99.51 | |
| 1f2q_A | 176 | High affinity immunoglobulin epsilon receptor ALP | 99.51 | |
| 3gkz_A | 257 | Anti-methamphetamine single chain FV; therapeutic | 99.51 | |
| 2yuw_A | 110 | Myosin binding protein C, SLOW type; fibronectin I | 99.5 | |
| 2if7_A | 193 | SLAM family member 6; NTB-A, homophilic receptor, | 99.5 | |
| 3auv_A | 276 | SC-DSFV derived from the G6-FAB; SC-DSFV (disulfid | 99.5 | |
| 3juy_B | 256 | 3B3 single chain variant HIV-1 antibody; envelope | 99.5 | |
| 3mj8_L | 213 | Stimulatory hamster antibody HL4E10 FAB light CHA; | 99.5 | |
| 3nl4_L | 213 | Antigen binding fragment, immunoglobulin IGG - LI; | 99.5 | |
| 1jbj_A | 186 | CD3 epsilon and gamma ectodomain fragment complex; | 99.5 | |
| 1mq8_A | 291 | ICAM-1, intercellular adhesion molecule-1, CD54 an | 99.5 | |
| 3uzq_A | 253 | Anti-dengue MAB 4E11; dengue antibody neutralizati | 99.49 | |
| 1lk3_L | 210 | 9D7 light chain; antigen-antibody complex, immune | 99.49 | |
| 2a38_A | 194 | Titin; Z1Z2, structural protein; 2.00A {Homo sapie | 99.49 | |
| 1za6_B | 344 | IGG heavy chain; immunoglobulin fold, CH2-domain-d | 99.49 | |
| 4fmk_A | 225 | Poliovirus receptor-related protein 2; immunoglobu | 99.49 | |
| 1x4z_A | 121 | Biregional cell adhesion molecule-related/DOWN- re | 99.49 | |
| 2crm_A | 120 | Fibronectin type-III domain containing protein 3A; | 99.48 | |
| 1wis_A | 124 | KIAA1514 protein; FNIII domain, sidekick-2, struct | 99.48 | |
| 3umt_A | 256 | SCFV heavy chain and light chain; stability engine | 99.47 | |
| 1n26_A | 325 | IL-6 receptor alpha chain; transmembrane, glycopro | 99.47 | |
| 3knb_A | 100 | Titin; IG-like, titin, OBSL1, ATP-binding, calmodu | 99.47 | |
| 3uzq_A | 253 | Anti-dengue MAB 4E11; dengue antibody neutralizati | 99.47 | |
| 3auv_A | 276 | SC-DSFV derived from the G6-FAB; SC-DSFV (disulfid | 99.47 | |
| 1cfb_A | 205 | Drosophila neuroglian; neural adhesion molecule; H | 99.47 | |
| 4i0k_A | 222 | CD276 antigen; immunoglobulin domain, glycoprotein | 99.47 | |
| 3tf7_C | 256 | 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; | 99.47 | |
| 2p1y_A | 238 | Bispecific alpha/beta TCR; autoimmunity, immunoglo | 99.47 | |
| 3knb_B | 107 | Obscurin-like protein 1; IG-like, titin, OBSL1, AT | 99.47 | |
| 1dr9_A | 201 | B7-1 (CD80), T lymphocyte activation antigen; IG s | 99.47 | |
| 2cqv_A | 114 | MLCK, myosin light chain kinase, smooth muscle and | 99.47 | |
| 1x3d_A | 118 | Fibronectin type-III domain containing protein 3A; | 99.46 | |
| 1dr9_A | 201 | B7-1 (CD80), T lymphocyte activation antigen; IG s | 99.46 | |
| 2crz_A | 110 | Fibronectin type-III domain containing protein 3A; | 99.46 | |
| 1nqb_A | 256 | Single-chain antibody fragment; multivalent antibo | 99.46 | |
| 3tv3_L | 211 | PGT128 light chain, IG lambda-2 chain C regions; F | 99.46 | |
| 3esu_F | 250 | Antibody 14B7* light chain and antibody 14B7* heav | 99.46 | |
| 1mju_H | 227 | Immunoglobulin MS6-12; catalytic antibody, ester h | 99.46 | |
| 3p4l_A | 211 | Neogenin; iron homeostasis, hemojuvelin receptor, | 99.46 | |
| 1jbj_A | 186 | CD3 epsilon and gamma ectodomain fragment complex; | 99.46 | |
| 1qok_A | 282 | MFE-23 recombinant antibody fragment; immunoglobul | 99.46 | |
| 1bpv_A | 112 | Titin, A71, connectin; fibronectin type III; NMR { | 99.45 | |
| 1p6f_A | 242 | NKP46, natural cytotoxicity triggering receptor 1; | 99.45 | |
| 3gkz_A | 257 | Anti-methamphetamine single chain FV; therapeutic | 99.45 | |
| 2zg1_A | 214 | Sialic acid-binding IG-like lectin 5; siglec-5 inh | 99.45 | |
| 3ry4_A | 170 | Low affinity immunoglobulin gamma FC region recep; | 99.45 | |
| 1hnf_A | 182 | CD2; T lymphocyte adhesion glycoprotein; HET: NAG; | 99.45 | |
| 3knb_A | 100 | Titin; IG-like, titin, OBSL1, ATP-binding, calmodu | 99.45 | |
| 1p6f_A | 242 | NKP46, natural cytotoxicity triggering receptor 1; | 99.44 | |
| 3esu_F | 250 | Antibody 14B7* light chain and antibody 14B7* heav | 99.44 | |
| 2wqr_A | 323 | IG epsilon chain C region; immune system, immunogl | 99.44 | |
| 1moe_A | 240 | Anti-CEA MAB T84.66; anti carcinoembryonic antigen | 99.44 | |
| 2znx_A | 242 | SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, s | 99.44 | |
| 3sob_L | 237 | Antibody light chain; beta propeller, protein bind | 99.43 | |
| 1nkr_A | 201 | P58-CL42 KIR; inhibitory receptor, natural killer | 99.43 | |
| 3d9a_L | 213 | Light chain of hyhel10 antibody fragment (FAB); ly | 99.43 | |
| 3ux9_B | 256 | SCFV antibody; five helices, long loop connecting | 99.43 | |
| 3qib_D | 270 | 2B4 beta chain; IG domain, immune system; HET: NAG | 99.43 | |
| 3lcy_A | 197 | Titin; A-BAND, IG tandem domains, ATP-binding, cal | 99.42 | |
| 1sy6_A | 204 | T-cell surface glycoprotein CD3 gamma/epsilon chai | 99.42 | |
| 2kbg_A | 114 | N-CAM 2, neural cell adhesion molecule 2; fibronec | 99.42 | |
| 1x4x_A | 106 | Fibronectin type-III domain containing protein 3A; | 99.42 | |
| 2znx_A | 242 | SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, s | 99.42 | |
| 1moe_A | 240 | Anti-CEA MAB T84.66; anti carcinoembryonic antigen | 99.42 | |
| 3r06_A | 213 | Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; | 99.42 | |
| 2yd6_A | 212 | PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa | 99.42 | |
| 1qr4_A | 186 | Protein (tenascin); fibronectin type-III, heparin, | 99.42 | |
| 3umt_A | 256 | SCFV heavy chain and light chain; stability engine | 99.42 | |
| 2p1y_A | 238 | Bispecific alpha/beta TCR; autoimmunity, immunoglo | 99.42 | |
| 1svz_A | 247 | Immunoglobulin;, single-chain FV fragment 1696; an | 99.42 | |
| 3eow_R | 221 | Poliovirus receptor; immunoglobulin super family, | 99.41 | |
| 4dzb_B | 246 | Vbeta2 (MAIT T cell receptor); immune system; 1.70 | 99.41 | |
| 2xzc_L | 216 | FAB A.17 light chain; immune system; HET: XOP; 1.3 | 99.41 | |
| 1q0x_L | 212 | FAB 9B1, light chain; anti-morphine antibody, FAB | 99.41 | |
| 2v44_A | 189 | NCAM2, neural cell adhesion molecule 2; phosphoryl | 99.41 | |
| 1svz_A | 247 | Immunoglobulin;, single-chain FV fragment 1696; an | 99.41 | |
| 3nl4_L | 213 | Antigen binding fragment, immunoglobulin IGG - LI; | 99.41 | |
| 1qok_A | 282 | MFE-23 recombinant antibody fragment; immunoglobul | 99.4 | |
| 3ux9_B | 256 | SCFV antibody; five helices, long loop connecting | 99.4 | |
| 2gee_A | 203 | Hypothetical protein; fibronectin, EIIIB, cancer, | 99.4 | |
| 2e7c_A | 118 | Myosin-binding protein C, fast-type; IG-like domai | 99.4 | |
| 1lk3_L | 210 | 9D7 light chain; antigen-antibody complex, immune | 99.4 | |
| 3omz_A | 259 | Human vdelta1 gamma delta T cell receptor delta1A; | 99.4 | |
| 1nfd_E | 212 | H57 FAB; complex (immunoreceptor-immunoglobulin), | 99.4 | |
| 2ibg_A | 214 | CG9211-PA, GH03927P; IHOG, fibronectin type III, p | 99.4 | |
| 1v5j_A | 108 | KIAA1355 protein, RSGI RUH-008; FN3 domain, human | 99.4 | |
| 2pet_A | 231 | Lutheran blood group glycoprotein; immunoglobulin | 99.4 | |
| 2wv3_A | 190 | Neuroplastin; igcam, membrane, glycoprotein, cell | 99.39 | |
| 1b6u_A | 257 | KIR2DL3, P58 killer cell inhibitory receptor; natu | 99.39 | |
| 1nkr_A | 201 | P58-CL42 KIR; inhibitory receptor, natural killer | 99.39 | |
| 2yrz_A | 118 | Integrin beta-4; GP150, CD104 antigen, structural | 99.39 | |
| 2gjj_A | 264 | A21 single-chain antibody fragment against ERBB2; | 99.39 | |
| 1q9r_B | 222 | S25-2 FAB (IGG1K) heavy chain; antigen-binding fra | 99.39 | |
| 2zg1_A | 214 | Sialic acid-binding IG-like lectin 5; siglec-5 inh | 99.38 | |
| 1c1e_H | 219 | Catalytic antibody 1E9 (heavy chain); diels-alder, | 99.38 | |
| 2yd1_A | 212 | Tyrosine-protein phosphatase LAR; hydrolase; 1.80A | 99.38 | |
| 4f80_A | 226 | Butyrophilin subfamily 3 member A1; B7 superfamily | 99.38 | |
| 4fmk_A | 225 | Poliovirus receptor-related protein 2; immunoglobu | 99.38 | |
| 2yux_A | 120 | Myosin-binding protein C, SLOW-type; fibronectin I | 99.37 | |
| 1n26_A | 325 | IL-6 receptor alpha chain; transmembrane, glycopro | 99.37 | |
| 3tf7_C | 256 | 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; | 99.37 | |
| 1x5x_A | 109 | Fibronectin type-III domain containing protein 3A; | 99.37 | |
| 1epf_A | 191 | NCAM, protein (neural cell adhesion molecule); imm | 99.36 | |
| 2ic2_A | 115 | CG9211-PA, GH03927P; IHOG, hedgehog, fibronectin t | 99.36 | |
| 1ccz_A | 171 | Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8 | 99.36 | |
| 1c1e_H | 219 | Catalytic antibody 1E9 (heavy chain); diels-alder, | 99.36 | |
| 3s97_C | 201 | Contactin-1; carbonic anhdyrase like immunoglobuli | 99.36 | |
| 2e3v_A | 122 | Neural cell adhesion molecule 1, 140 kDa isoform; | 99.36 | |
| 2haz_A | 105 | N-CAM 1, neural cell adhesion molecule 1; fibronec | 99.36 | |
| 1q0x_L | 212 | FAB 9B1, light chain; anti-morphine antibody, FAB | 99.36 | |
| 1wfu_A | 120 | Unnamed protein product; FN3 domain, similar to 17 | 99.35 | |
| 3r06_A | 213 | Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; | 99.35 | |
| 1b6u_A | 257 | KIR2DL3, P58 killer cell inhibitory receptor; natu | 99.35 | |
| 2ed7_A | 119 | Netrin receptor DCC; tumor suppressor protein DCC, | 99.35 | |
| 2xzc_L | 216 | FAB A.17 light chain; immune system; HET: XOP; 1.3 | 99.35 | |
| 1x5f_A | 120 | Neogenin; RGM binding, fibronectin type III domain | 99.35 | |
| 2ee2_A | 119 | Contactin-1; neural cell surface protein F3, glyco | 99.35 | |
| 3bkj_L | 252 | WO2 IGG2A FAB fragment light chain kappa; abeta, F | 99.34 | |
| 3sob_L | 237 | Antibody light chain; beta propeller, protein bind | 99.34 | |
| 1op3_H | 225 | FAB 2G12, heavy chain; domain-swapped FAB 2G12, an | 99.34 | |
| 1x5g_A | 116 | Neogenin; RGM binding, fibronectin type III domain | 99.34 | |
| 3d9a_H | 210 | Heavy chain of hyhel10 antibody fragment (FAB); ly | 99.34 | |
| 1wfn_A | 119 | Sidekick 2; FN3, cell adhesion, structural genomic | 99.34 | |
| 1tdq_A | 283 | Tenascin-R; extracellular matrix, lecticans, tenas | 99.34 | |
| 1ccz_A | 171 | Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8 | 99.34 | |
| 2ha1_A | 201 | Fibronectin; beta sandwich, protein-protein comple | 99.33 | |
| 1nfd_E | 212 | H57 FAB; complex (immunoreceptor-immunoglobulin), | 99.33 | |
| 2iep_A | 192 | Muscle-specific kinase receptor; beta-sandwich, si | 99.33 | |
| 3f7q_A | 234 | Integrin beta-4, GP150; hemidesmosome, cell adhesi | 99.33 | |
| 2e7c_A | 118 | Myosin-binding protein C, fast-type; IG-like domai | 99.33 | |
| 2cqv_A | 114 | MLCK, myosin light chain kinase, smooth muscle and | 99.33 | |
| 2va4_A | 192 | NCAM2, N-CAM 2, neural cell adhesion molecule 2; t | 99.33 | |
| 3qp3_A | 103 | Titin; I-SET IG-like, sarcomere, M-BAND, transfera | 99.33 | |
| 3m8o_H | 221 | Immunoglobulin A1 heavy chain; immunoglobulin fold | 99.33 | |
| 2c5d_C | 195 | AXL oncogene, tyrosine-protein kinase receptor UFO | 99.33 | |
| 1pz5_B | 220 | Heavy chain of FAB (SYA/J6); antibody-antigen stru | 99.33 | |
| 1rhf_A | 182 | Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 | 99.33 | |
| 2j6e_L | 234 | IGM, FAB light chain; autoimmune complex human IGM | 99.33 | |
| 3tv3_L | 211 | PGT128 light chain, IG lambda-2 chain C regions; F | 99.32 | |
| 2edx_A | 134 | Protein tyrosine phosphatase, receptor type, F; LA | 99.32 | |
| 1uem_A | 117 | KIAA1568 protein; immunoglobulin-like beta-sandwic | 99.32 | |
| 1wf5_A | 121 | Sidekick 2 protein; FNIII domain, structural genom | 99.32 | |
| 2gki_A | 291 | Nuclease; anti-DNA antibody, catalytic antibody, i | 99.32 | |
| 1hnf_A | 182 | CD2; T lymphocyte adhesion glycoprotein; HET: NAG; | 99.32 | |
| 1q9r_B | 222 | S25-2 FAB (IGG1K) heavy chain; antigen-binding fra | 99.32 | |
| 1bqu_A | 215 | Protein (GP130); cytokine receptor, glycoprotein 1 | 99.31 | |
| 1x5l_A | 111 | Ephrin type-A receptor 8; FN3 domain, structural g | 99.31 | |
| 3k0w_A | 218 | Mucosa-associated lymphoid tissue lymphoma translo | 99.31 | |
| 1va9_A | 122 | DOWN syndrome cell adhesion molecule like- protein | 99.31 | |
| 3fku_X | 280 | Neutralizing antibody F10; influenza, hemagglutini | 99.31 | |
| 3d9a_H | 210 | Heavy chain of hyhel10 antibody fragment (FAB); ly | 99.31 | |
| 3r8q_A | 290 | Fibronectin; heparin, FNIII, heparin binding, cell | 99.31 | |
| 1sy6_A | 204 | T-cell surface glycoprotein CD3 gamma/epsilon chai | 99.31 | |
| 1pz5_B | 220 | Heavy chain of FAB (SYA/J6); antibody-antigen stru | 99.31 | |
| 2ed9_A | 124 | Netrin receptor DCC; tumor suppressor protein DCC, | 99.31 | |
| 2gki_A | 291 | Nuclease; anti-DNA antibody, catalytic antibody, i | 99.31 | |
| 3liz_H | 253 | 4C3 monoclonal antibody heavy chain; hydrolase-imm | 99.3 | |
| 1x9q_A | 268 | SCFV, 4M5.3 anti-fluorescein single chain antibody | 99.3 | |
| 2dru_A | 180 | Chimera of CD48 antigen and T-cell surface antige; | 99.3 | |
| 1hxm_B | 242 | Gamma-delta T-cell receptor; IG domain, TCR, GDTCR | 99.3 | |
| 2v5t_A | 189 | NCAM2, N-CAM 2, neural cell adhesion molecule 2; p | 99.3 | |
| 2dm4_A | 108 | Sortilin-related receptor; beta-sandwich, sorting | 99.3 | |
| 2dru_A | 180 | Chimera of CD48 antigen and T-cell surface antige; | 99.3 | |
| 1x5h_A | 132 | Neogenin; RGM binding, fibronectin type III domain | 99.29 | |
| 3eow_R | 221 | Poliovirus receptor; immunoglobulin super family, | 99.29 | |
| 3q5y_A | 240 | TCR N15 beta; IG, T cell receptor, antigen peptide | 99.29 | |
| 2gjj_A | 264 | A21 single-chain antibody fragment against ERBB2; | 99.29 | |
| 1uen_A | 125 | KIAA0343 protein; immunoglobulin-like beta-sandwic | 99.29 | |
| 1x5z_A | 115 | Receptor-type tyrosine-protein phosphatase delta; | 99.29 | |
| 3fku_X | 280 | Neutralizing antibody F10; influenza, hemagglutini | 99.29 | |
| 1x5i_A | 126 | Neogenin; RGM binding, fibronectin type III domain | 99.29 | |
| 2e7h_A | 109 | Ephrin type-B receptor 4; FN3 domain, tyrosine- pr | 99.29 | |
| 2djs_A | 108 | Ephrin type-B receptor 1; tyrosine-protein kinase | 99.29 | |
| 3irg_B | 107 | Obscurin-like protein 1; IG-like, titin, OBSL1, co | 99.29 | |
| 3qp3_A | 103 | Titin; I-SET IG-like, sarcomere, M-BAND, transfera | 99.29 | |
| 3nfj_J | 245 | T cell receptor beta chain; immunoglobulin family, | 99.28 | |
| 1waa_A | 93 | Titin; metal binding protein, calmodulin-binding, | 99.28 | |
| 3bkj_L | 252 | WO2 IGG2A FAB fragment light chain kappa; abeta, F | 99.28 | |
| 3lpw_A | 197 | A77-A78 domain from titin; intracellular FNIII-tan | 99.28 | |
| 2bk8_A | 97 | Connectin, M1, titin heart isoform N2-B; IG domain | 99.28 | |
| 3pl6_D | 268 | MBP peptide / T-cell receptor beta chain chimera; | 99.28 | |
| 1uey_A | 127 | KIAA0343 protein; immunoglobulin-like beta-sandwic | 99.28 | |
| 2fbj_H | 220 | IGA-kappa J539 FAB (heavy chain); immunoglobulin; | 99.28 | |
| 2dm2_A | 110 | Palladin; beta-sandwich, KIAA0992, actin-associate | 99.27 | |
| 3bae_H | 228 | WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO | 99.27 | |
| 1g1c_A | 99 | Immunoglobulin-like domain I1 from titin; immunogl | 99.27 | |
| 2lu7_A | 84 | Obscurin-like protein 1; structural genomics, nort | 99.27 | |
| 3puc_A | 99 | Titin; I-SET IG-like domain, M-BAND, transferase; | 99.27 | |
| 4ei6_B | 245 | Vbeta16 XV19 type II natural killer T cell recept | 99.27 | |
| 3puc_A | 99 | Titin; I-SET IG-like domain, M-BAND, transferase; | 99.27 | |
| 1nbq_A | 209 | JAM, junctional adhesion molecule 1, PAM-1; reovir | 99.27 | |
| 1ugn_A | 198 | LIR1, leukocyte immunoglobulin-like receptor 1; im | 99.26 | |
| 3fl7_A | 536 | Ephrin receptor; ATP-binding, kinase, nucleotide-b | 99.26 | |
| 2vkw_A | 209 | Neural cell adhesion molecule 1,140 kDa isoform; a | 99.26 | |
| 1wfo_A | 130 | Sidekick 2; FN3, cell adhesion, structural genomic | 99.26 | |
| 2kkq_A | 116 | Myotilin; unknown function, actin-binding, cell me | 99.26 | |
| 1wit_A | 93 | Twitchin 18TH IGSF module; immunoglobulin superfam | 99.26 | |
| 2dbj_A | 124 | Proto-oncogene tyrosine-protein kinase MER precurs | 99.26 | |
| 1x9q_A | 268 | SCFV, 4M5.3 anti-fluorescein single chain antibody | 99.26 | |
| 2yuz_A | 100 | Myosin-binding protein C, SLOW-type; immunoglobuli | 99.26 | |
| 2lu7_A | 84 | Obscurin-like protein 1; structural genomics, nort | 99.26 | |
| 2dju_A | 106 | Receptor-type tyrosine-protein phosphatase F; LAR | 99.26 | |
| 3fl7_A | 536 | Ephrin receptor; ATP-binding, kinase, nucleotide-b | 99.25 | |
| 1gsm_A | 210 | Madcam-1, mucosal addressin cell adhesion molecule | 99.25 | |
| 2edb_A | 116 | Netrin receptor DCC; tumor suppressor protein DCC, | 99.25 | |
| 1g1c_A | 99 | Immunoglobulin-like domain I1 from titin; immunogl | 99.25 | |
| 2ed8_A | 106 | Netrin receptor DCC; tumor suppressor protein DCC, | 99.25 | |
| 1i1r_A | 303 | GP130, interleukin-6 receptor beta chain; cytokine | 99.25 | |
| 3bn9_D | 257 | E2 FAB heavy chain; antibody-protease complex, pro | 99.24 | |
| 2dn7_A | 107 | Receptor-type tyrosine-protein phosphatase F; LAR | 99.24 | |
| 2lvc_A | 91 | Obscurin-like protein 1; structural genomics, nort | 99.24 | |
| 3grw_A | 241 | Fibroblast growth factor receptor 3; FGFR3, protei | 99.24 | |
| 3irg_A | 100 | Titin; IG-like, titin, OBSL1, complex, alternative | 99.24 | |
| 3t04_D | 103 | Monobody 7C12; engineered binding protein, antibod | 99.24 | |
| 2kdg_A | 100 | Myotilin; immonoglobulin domain, actin-binding, st | 99.24 | |
| 1gxe_A | 139 | Myosin binding protein C, cardiac-type; cytoskelet | 99.24 | |
| 3nl4_H | 215 | Antigen binding fragment,immunoglobulin IGG - HEA; | 99.24 | |
| 2vol_A | 207 | Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, | 99.23 | |
| 1uct_A | 218 | Immunoglobulin alpha FC receptor; beta stands, imm | 99.23 | |
| 2j6e_L | 234 | IGM, FAB light chain; autoimmune complex human IGM | 99.23 | |
| 4frw_A | 218 | Poliovirus receptor-related protein 4; immunoglobu | 99.23 | |
| 2dlh_A | 121 | Receptor-type tyrosine-protein phosphatase delta; | 99.22 | |
| 3irg_A | 100 | Titin; IG-like, titin, OBSL1, complex, alternative | 99.22 | |
| 1u2h_A | 99 | APEG-1, aortic preferentially expressed protein 1; | 99.22 | |
| 3qht_C | 97 | Monobody YSMB-1; fibronectin type III, yeast small | 99.22 | |
| 1wit_A | 93 | Twitchin 18TH IGSF module; immunoglobulin superfam | 99.22 | |
| 3bqu_C | 233 | 3H6 FAB light chain; beta sheet, immune system; 3. | 99.22 | |
| 1nct_A | 106 | Titin; cell adhesion, glycoprotein, transmembrane, | 99.21 | |
| 3juy_B | 256 | 3B3 single chain variant HIV-1 antibody; envelope | 99.21 | |
| 2dm3_A | 110 | KIAA0992 protein, palladin; beta-sandwich, myopall | 99.21 | |
| 2vr9_A | 217 | Roundabout 1, ROBO; immunoglobulin-like domain, AX | 99.21 | |
| 1dee_B | 223 | IGM RF 2A2; FAB-IBP complex 2.7A resolution bindin | 99.21 | |
| 2gys_A | 419 | Cytokine receptor common beta chain; dimer of inte | 99.21 | |
| 1x4y_A | 114 | Biregional cell adhesion molecule-related/DOWN- re | 99.21 | |
| 3b83_A | 100 | Ten-D3; beta sheet, computational redesigned prote | 99.2 | |
| 3bqu_C | 233 | 3H6 FAB light chain; beta sheet, immune system; 3. | 99.2 | |
| 3irg_B | 107 | Obscurin-like protein 1; IG-like, titin, OBSL1, co | 99.2 | |
| 2bk8_A | 97 | Connectin, M1, titin heart isoform N2-B; IG domain | 99.2 | |
| 1he7_A | 126 | High affinity nerve growth factor receptor; transf | 99.2 | |
| 2fbj_H | 220 | IGA-kappa J539 FAB (heavy chain); immunoglobulin; | 99.2 | |
| 2cum_A | 105 | Tenascin-X; hexabrachion-like, fibronectin type II | 99.2 | |
| 3bae_H | 228 | WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO | 99.2 | |
| 3l5i_A | 290 | Interleukin-6 receptor subunit beta; cytokine rece | 99.2 | |
| 3qib_D | 270 | 2B4 beta chain; IG domain, immune system; HET: NAG | 99.19 | |
| 1gxe_A | 139 | Myosin binding protein C, cardiac-type; cytoskelet | 99.19 | |
| 1dee_B | 223 | IGM RF 2A2; FAB-IBP complex 2.7A resolution bindin | 99.19 | |
| 3kvq_A | 108 | Vascular endothelial growth factor receptor 2; veg | 99.19 | |
| 2ee3_A | 108 | Collagen alpha-1(XX) chain; KIAA1510, structural g | 99.19 | |
| 1dn0_B | 232 | IGM-kappa cold agglutinin (heavy chain); FAB, anti | 99.19 | |
| 1wwb_X | 103 | Protein (brain derived neurotrophic factor recepto | 99.19 | |
| 2kdg_A | 100 | Myotilin; immonoglobulin domain, actin-binding, st | 99.19 | |
| 1u2h_A | 99 | APEG-1, aortic preferentially expressed protein 1; | 99.19 | |
| 2ckn_A | 95 | Basic fibroblast growth factor receptor 1; kinase, | 99.19 | |
| 2ede_A | 114 | Netrin receptor DCC; tumor suppressor protein DCC, | 99.18 | |
| 1nct_A | 106 | Titin; cell adhesion, glycoprotein, transmembrane, | 99.18 | |
| 1x5j_A | 113 | Neogenin; RGM binding, fibronectin type III domain | 99.18 | |
| 1dn0_B | 232 | IGM-kappa cold agglutinin (heavy chain); FAB, anti | 99.17 | |
| 3ojm_B | 231 | Fibroblast growth factor receptor 2; beta trefoil | 99.17 | |
| 2v9r_A | 212 | Roundabout homolog 1; proto-oncogene, differentiat | 99.17 | |
| 3e0g_A | 483 | Leukemia inhibitory factor receptor; IG domain, cy | 99.17 | |
| 2dav_A | 126 | SLOW MYBP-C, myosin-binding protein C, SLOW-type; | 99.17 | |
| 1x44_A | 103 | Myosin-binding protein C, SLOW-type; IG-like domai | 99.17 | |
| 1waa_A | 93 | Titin; metal binding protein, calmodulin-binding, | 99.17 | |
| 2dm2_A | 110 | Palladin; beta-sandwich, KIAA0992, actin-associate | 99.17 | |
| 1oll_A | 188 | NK receptor; immune system/receptor, NK cell trigg | 99.17 | |
| 3qhz_H | 232 | Human monoclonal antibody DEL2D1, FAB heavy chain; | 99.16 | |
| 3nl4_H | 215 | Antigen binding fragment,immunoglobulin IGG - HEA; | 99.16 | |
| 2yuz_A | 100 | Myosin-binding protein C, SLOW-type; immunoglobuli | 99.16 | |
| 3sbw_C | 222 | Programmed cell death 1 ligand 1; PD-1, PD-L1, B7- | 99.16 | |
| 2db8_A | 110 | Tripartite motif protein 9, isoform 2; ring finger | 99.16 | |
| 2q7n_A | 488 | Leukemia inhibitory factor receptor; cytokine cell | 99.15 | |
| 2xqy_G | 261 | A13-D6.3 monoclonal antibody, envelope glycoprotei | 99.15 | |
| 2kkq_A | 116 | Myotilin; unknown function, actin-binding, cell me | 99.14 | |
| 3k2m_C | 101 | Monobody HA4; engineered binding protein, antibody | 99.14 | |
| 1hng_A | 176 | CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra | 99.14 | |
| 1fhg_A | 154 | Telokin; immunoglobulin fold, beta barrel, contrac | 99.13 | |
| 2edd_A | 123 | Netrin receptor DCC; tumor suppressor protein DCC, | 99.13 | |
| 3qwq_B | 114 | Adnectin; cell surface receptor, tyrosine kinase, | 99.13 | |
| 2e6p_A | 104 | Obscurin-like protein 1; IG-like domain, structura | 99.13 | |
| 3o3u_N | 581 | Maltose-binding periplasmic protein, advanced Gly | 99.13 | |
| 3lb6_C | 380 | IL-13, interleukin-13 receptor subunit alpha-2; cy | 99.13 | |
| 2rb8_A | 104 | Tenascin; beta sheet,loop design, alternative spli | 99.12 | |
| 2ocf_D | 121 | Fibronectin; estrogen receptor, LBD, monobody, est | 99.12 | |
| 2edf_A | 103 | Obscurin; beta-sandwich, IG-fold, structural genom | 99.12 | |
| 2eny_A | 104 | Obscurin; beta-sandwich, IG-fold, structural genom | 99.12 | |
| 1qr4_A | 186 | Protein (tenascin); fibronectin type-III, heparin, | 99.11 | |
| 2rgs_A | 218 | I, IG gamma-2B heavy chain; FC-fragment, immunoglo | 99.11 | |
| 2dlt_A | 106 | Myosin binding protein C, fast-type; IG-like domai | 99.11 | |
| 2edj_A | 100 | Roundabout homolog 2; KIAA1568 protein, beta sandw | 99.11 | |
| 1c5d_H | 215 | Monoclonal antibody against the main immunogenic t | 99.11 | |
| 2lvc_A | 91 | Obscurin-like protein 1; structural genomics, nort | 99.11 | |
| 3teu_A | 98 | Fibcon; FN3 domain, fibronectin TPYE III domain, c | 99.11 | |
| 2dmk_A | 127 | Midline 2 isoform 2; midline defect 2, tripartite | 99.11 | |
| 2edj_A | 100 | Roundabout homolog 2; KIAA1568 protein, beta sandw | 99.1 | |
| 3s98_A | 306 | Interferon alpha/beta receptor 1; human, type I in | 99.1 | |
| 1x5a_A | 107 | Ephrin type-A receptor 1; tyrosine-protein kinase | 99.1 | |
| 3s96_B | 218 | 3B5H10 FAB light chain; huntingtin, immune system; | 99.1 | |
| 2eny_A | 104 | Obscurin; beta-sandwich, IG-fold, structural genom | 99.09 | |
| 2e6p_A | 104 | Obscurin-like protein 1; IG-like domain, structura | 99.09 |
| >3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-34 Score=300.49 Aligned_cols=334 Identities=19% Similarity=0.251 Sum_probs=264.3
Q ss_pred CCcEEEeCCCcCCCeEEEEEEEecCCCCCCCCCCCcceEeccCCCCCccccCcccceEEecCCeEEEEEeeeeccccccC
Q psy7039 68 GETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKS 147 (516)
Q Consensus 68 ~~~~~~i~~l~~~~~y~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~ 147 (516)
....|.|.+++..|.|.|+|.|.|..|.... ...+.+.....+|.+. ..+..+.+.+|+.+.|.|.+.
T Consensus 155 ~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~---~~~l~v~~~~~pp~~~-~~p~~~~v~~G~~~~l~C~~~-------- 222 (570)
T 3b43_A 155 NVATLQILQTDQSHVGQYNCSASNPLGTASS---SAKLTLSEHEVPPFFD-LKPVSVDLALGESGTFKCHVT-------- 222 (570)
T ss_dssp TEEEEEESSCCGGGCEEEEEEEEETTEEEEE---EEEEEEECCCCCCEEE-ECCCCBCCBSBSCEEEEEEEE--------
T ss_pred CEEEEEECcCChHHCEEEEEEEEeCCcEEEE---EEEEEEcCCCCCCccc-cCCceeEecCCCeEEEEEEEE--------
Confidence 4568999999999999999999998875432 2223333334566665 455667788999999999999
Q ss_pred ccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEE
Q psy7039 148 PLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAH 227 (516)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~ 227 (516)
|.|.+.++|++++..+....++.+........|.|.+++.+|+|.|+|.+.|..|.......
T Consensus 223 ------------------g~p~p~i~W~k~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~~ 284 (570)
T 3b43_A 223 ------------------GTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQ 284 (570)
T ss_dssp ------------------SSSCCEEEEEETTEECCTTSSEEEEEETTEEEEEESSBCGGGCEEEEEEEEETTEEEEEEEE
T ss_pred ------------------ECCCCEEEEEECCEECcCCCcEEEEEECCEEEEEEcccCcccCEEEEEEEECCCCcEEEEEE
Confidence 99999999999999998888887776677789999999999999999999999998776665
Q ss_pred eecee---ee-----eccccCCceEEEEEEEEccCCCCCceeccccc-----ccceEEEEEecceeeEEEccCCCCCceE
Q psy7039 228 VTGTE---FT-----DNNVHEGKAYEYRVSAVNAAGTEKPKISLDAL-----IGKRIKEFVTSTTASLNIKNSVRKDSGI 294 (516)
Q Consensus 228 ~~~~~---~~-----~~~l~~g~~~~~~~~~~~~~g~p~p~i~W~~~-----~~~~~~~~~~~~~~~l~i~~l~~~d~g~ 294 (516)
+.+.. +. ...+..|....+.|.+ .|.|.|.+.|.+. ......+........|.|.++..+|+|.
T Consensus 285 l~V~~~p~~~~~~~~~~~v~~g~~~~l~C~~---~g~P~p~v~W~k~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~D~G~ 361 (570)
T 3b43_A 285 LGVQEPPRFIKKLEPSRIVKQDEHTRYECKI---GGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGD 361 (570)
T ss_dssp ECCBCCCEEEECCCSBCCEESSCEEEEEEEE---ESSSSCEEEEEETTEECCCSSSEEEEEETTEEEEEEESCCGGGCEE
T ss_pred EEeecCCcccccCCCccEEcCCCcEEEEEEE---eeCCCCEEEEeECCEECCCCCcEEEEEECCEEEEEECCCCcccCEE
Confidence 44322 11 1235689999999998 7899999999652 2334445555667889999999999999
Q ss_pred EEEEEEecCCCcceeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEE
Q psy7039 295 YKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFT 374 (516)
Q Consensus 295 y~c~a~n~~g~~~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~ 374 (516)
|+|.|.|..|.....+.|.|..+|.... .+....+..|+.+.
T Consensus 362 Y~C~a~N~~g~~~~~~~l~V~~~P~~~~--------------------------------------~~~~~~~~~G~~v~ 403 (570)
T 3b43_A 362 YTCEAHNAAGSASSSTSLKVKEPPVFRK--------------------------------------KPHPVETLKGADVH 403 (570)
T ss_dssp EEEEEEBTTBCCEEEEEECEECCCEECS--------------------------------------CCCCEEECTTCCEE
T ss_pred EEEEEEeCCCEEEEEEEEEecCCCeeec--------------------------------------CCCceeecCCCEEE
Confidence 9999999999998888888887654321 12345678899999
Q ss_pred EEEEEeeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEEEEecCCCCCC
Q psy7039 375 ITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQ 454 (516)
Q Consensus 375 l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~v~~~p~~P~ 454 (516)
|.|.+.|.|.+.+.|++++..+..+.++.+...+....|.|.++.. .|.|.|+|.|.|..|.....+.|.|..+|....
T Consensus 404 l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~v~~-~D~G~Y~C~A~N~~G~~~~~~~l~v~~~P~~~~ 482 (570)
T 3b43_A 404 LECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDS-ADIGEYQCKASNDVGSDTCVGSITLKAPPRFVK 482 (570)
T ss_dssp EEEEEESSSSCCCEEEETTEECCSSSSEEEEEETTEEEEEECSCCG-GGCEEEEEEEECSSCEEEEEEEEEECCCCEEEE
T ss_pred EEEEEecCCCCEEEEEECCEECcCCCCEEEEEcCCEEEEEECCCCh-hhCEEEEEEEEECCCeEEEEEEEEeccCCcccc
Confidence 9999999999999999999999888888887777778899999999 999999999999999999889999987664221
Q ss_pred CCcccccccCCeEEEEeeC
Q psy7039 455 GPLDVSDITPESCSLSWKP 473 (516)
Q Consensus 455 ~~l~~~~~~~~~~~l~W~~ 473 (516)
....+....++.+.|.+..
T Consensus 483 ~~~~~~~~~g~~~~l~c~~ 501 (570)
T 3b43_A 483 KLSDISTVVGEEVQLQATI 501 (570)
T ss_dssp CCCCBCCBTTCCEEEEEEE
T ss_pred cCCCceecCCCeEEEEEEE
Confidence 1112333445666666653
|
| >3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-33 Score=294.99 Aligned_cols=335 Identities=21% Similarity=0.291 Sum_probs=261.3
Q ss_pred CCcEEEeCCCcCCCeEEEEEEEecCCCCCCCCCCCcceEeccCCCCCccccCcccceEEecCCeEEEEEeeeeccccccC
Q psy7039 68 GETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKS 147 (516)
Q Consensus 68 ~~~~~~i~~l~~~~~y~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~ 147 (516)
...+|.|.+++..|.|.|+|.|.|..|.... ...+.+.....+|.+. ..+..+.+.+|+++.|.|.+.
T Consensus 59 ~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~---~~~l~v~~~~~~p~~~-~~~~~~~~~~G~~v~l~C~~~-------- 126 (570)
T 3b43_A 59 NVASLVINKVDHSDVGEYTCKAENSVGAVAS---SAVLVIKERKLPPSFA-RKLKDVHETLGFPVAFECRIN-------- 126 (570)
T ss_dssp TEEEEEESSCCGGGCEEEEEEEEETTEEEEE---EEEEEECCCCCCCEES-SCCCCEEEETTSCEEEEEEEE--------
T ss_pred CEEEEEEccCChhhCEEEEEEEEeCCceEEE---EEEEEECCCCCCCccc-ccCCCeEecCCCeEEEEEEEc--------
Confidence 3568999999999999999999998875432 2223344444567766 566778889999999999999
Q ss_pred ccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEE
Q psy7039 148 PLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAH 227 (516)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~ 227 (516)
|.|.+.+.|++++..+....++..........|.|.++..+|+|.|+|.+.|..|.......
T Consensus 127 ------------------g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~ 188 (570)
T 3b43_A 127 ------------------GSEPLQVSWYKDGELLKDDANLQTSFIHNVATLQILQTDQSHVGQYNCSASNPLGTASSSAK 188 (570)
T ss_dssp ------------------SSSSCEEEEEETTEECCCCSSEEEEEETTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEE
T ss_pred ------------------cCCCCEEEEEECCEECcCCCCEEEEEECCEEEEEECcCChHHCEEEEEEEEeCCcEEEEEEE
Confidence 99999999999999988776666555566789999999999999999999999887765543
Q ss_pred eece------ee----eeccccCCceEEEEEEEEccCCCCCceeccccc-----ccceEEEEEecceeeEEEccCCCCCc
Q psy7039 228 VTGT------EF----TDNNVHEGKAYEYRVSAVNAAGTEKPKISLDAL-----IGKRIKEFVTSTTASLNIKNSVRKDS 292 (516)
Q Consensus 228 ~~~~------~~----~~~~l~~g~~~~~~~~~~~~~g~p~p~i~W~~~-----~~~~~~~~~~~~~~~l~i~~l~~~d~ 292 (516)
+... .+ ....+.+|+.+.|.|.+ .|.|+|.++|.+. .+....+........|.|.++..+|+
T Consensus 189 l~v~~~~~pp~~~~~p~~~~v~~G~~~~l~C~~---~g~p~p~i~W~k~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~D~ 265 (570)
T 3b43_A 189 LTLSEHEVPPFFDLKPVSVDLALGESGTFKCHV---TGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDA 265 (570)
T ss_dssp EEEECCCCCCEEEECCCCBCCBSBSCEEEEEEE---ESSSCCEEEEEETTEECCTTSSEEEEEETTEEEEEESSBCGGGC
T ss_pred EEEcCCCCCCccccCCceeEecCCCeEEEEEEE---EECCCCEEEEEECCEECcCCCcEEEEEECCEEEEEEcccCcccC
Confidence 3221 11 12346789999999998 7889999999652 23444555556678999999999999
Q ss_pred eEEEEEEEecCCCcceeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCe
Q psy7039 293 GIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEE 372 (516)
Q Consensus 293 g~y~c~a~n~~g~~~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~ 372 (516)
|.|+|.|.|..|..+.++.|.|..+|..... ......+..|+.
T Consensus 266 G~Y~C~a~N~~g~~~~~~~l~V~~~p~~~~~-------------------------------------~~~~~~v~~g~~ 308 (570)
T 3b43_A 266 GQYTCYASNVAGKDSCSAQLGVQEPPRFIKK-------------------------------------LEPSRIVKQDEH 308 (570)
T ss_dssp EEEEEEEEETTEEEEEEEEECCBCCCEEEEC-------------------------------------CCSBCCEESSCE
T ss_pred EEEEEEEECCCCcEEEEEEEEeecCCccccc-------------------------------------CCCccEEcCCCc
Confidence 9999999999999888888887665432100 112234678999
Q ss_pred EEEEEEEeeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEEEEecCCCC
Q psy7039 373 FTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSP 452 (516)
Q Consensus 373 ~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~v~~~p~~ 452 (516)
+.|.|.+.|.|.+.+.|++++..+..+.++.+........|.|.++.. .|+|.|+|.|.|..|..+.++.|.|..+|..
T Consensus 309 ~~l~C~~~g~P~p~v~W~k~~~~l~~~~~~~~~~~~~~~~L~i~~v~~-~D~G~Y~C~a~N~~g~~~~~~~l~V~~~P~~ 387 (570)
T 3b43_A 309 TRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSV-EDSGDYTCEAHNAAGSASSSTSLKVKEPPVF 387 (570)
T ss_dssp EEEEEEEESSSSCEEEEEETTEECCCSSSEEEEEETTEEEEEEESCCG-GGCEEEEEEEEBTTBCCEEEEEECEECCCEE
T ss_pred EEEEEEEeeCCCCEEEEeECCEECCCCCcEEEEEECCEEEEEECCCCc-ccCEEEEEEEEeCCCEEEEEEEEEecCCCee
Confidence 999999999999999999999999888888777767778899999999 9999999999999999999999999877642
Q ss_pred CCCCcccccccCCeEEEEeeC
Q psy7039 453 PQGPLDVSDITPESCSLSWKP 473 (516)
Q Consensus 453 P~~~l~~~~~~~~~~~l~W~~ 473 (516)
...+..+....+..+.|.++.
T Consensus 388 ~~~~~~~~~~~G~~v~l~C~~ 408 (570)
T 3b43_A 388 RKKPHPVETLKGADVHLECEL 408 (570)
T ss_dssp CSCCCCEEECTTCCEEEEEEE
T ss_pred ecCCCceeecCCCEEEEEEEE
Confidence 212222333456667777653
|
| >2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-31 Score=264.52 Aligned_cols=306 Identities=20% Similarity=0.249 Sum_probs=233.9
Q ss_pred ccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeC--Ceeecc-----CCceEEeecC
Q psy7039 121 LNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSIN--GQVCQI-----GGRADVQTTK 193 (516)
Q Consensus 121 ~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~--~~~~~~-----~~~~~~~~~~ 193 (516)
+.+..+.+|+.+.|.|.+. |.|.+.+.|+++ +..+.. ..++.+....
T Consensus 7 ~~~~~~~~G~~v~l~C~~~--------------------------g~p~p~v~W~~~~~g~~~~~~~~~~~~~~~~~~~~ 60 (389)
T 2jll_A 7 LKNETTYENGQVTLVCDAE--------------------------GEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQH 60 (389)
T ss_dssp CCCEEEETTSEEEEEEEEE--------------------------CSSCCEEEEEETTTTEEECC--CCSSSSEEEEECS
T ss_pred cCceEEeCCCeEEEEEEee--------------------------cccCCeEEEEeCCCCceeccCcCCCCCeEEEeccC
Confidence 4567788899999999999 999999999999 887764 4677776666
Q ss_pred CeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEEeeceee-------eeccccCCceEEEEEEEEccCCCCCceeccccc
Q psy7039 194 SETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVTGTEF-------TDNNVHEGKAYEYRVSAVNAAGTEKPKISLDAL 266 (516)
Q Consensus 194 ~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~~~~~~-------~~~~l~~g~~~~~~~~~~~~~g~p~p~i~W~~~ 266 (516)
....|.|.+++.+|+|.|+|.+.|..|.......+.+... ....+..|+.+.|.|.+ .|.|.|.+.|.+.
T Consensus 61 ~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~P~~~~~~~~~~~~~g~~~~l~C~~---~g~p~~~i~W~~~ 137 (389)
T 2jll_A 61 GSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIEYAPKFISNQTIYYSWEGNPINISCDV---KSNPPASIHWRRD 137 (389)
T ss_dssp SEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEEEEEEEEEECCSCCEEEECTTCCEEEEECE---EEESCCEEEEEET
T ss_pred CcceEEEcccChhhCEEEEEEEEeCCCCcceEEEEEEEeCCEEecCcceEEeccCCEEEEEEEE---EecCCCeEEEEEC
Confidence 7889999999999999999999999998766655444321 12245789999999988 7889999999652
Q ss_pred c-------cceEEEEEecceeeEEEccCCCCCceEEEEEEEecCCCcceeEEEEEecCCCCCCCCceeeeccCCeeEEEe
Q psy7039 267 I-------GKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSW 339 (516)
Q Consensus 267 ~-------~~~~~~~~~~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W 339 (516)
. ..++.+........|.|.++...|+|.|+|.|.|..|.......+.+...|.+|.. +.+.......+.|+|
T Consensus 138 g~~l~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~P~~P~~-~~~~~~~~~~~~l~w 216 (389)
T 2jll_A 138 KLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATNHIGTRFQEYILALADVPSSPYG-VKIIELSQTTAKVSF 216 (389)
T ss_dssp TEESSCTTCTTEEEEECSSCEEEEECCCSTTSSEEEEEEEEETTEEEEEEEEEEECCCCCCCEE-EEEEEECSSCEEEEE
T ss_pred CccCCcccCceEEEeccCCEEEEEECCCChhhCEEEEEEEEcCCCcEEEEEEEEecCCCCCCcc-eEEeeccCCEEEEEE
Confidence 1 12444555566778999999999999999999999999888888888776665533 667777889999999
Q ss_pred cCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCce
Q psy7039 340 KPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAK 419 (516)
Q Consensus 340 ~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~ 419 (516)
.+|..++|.++.+| .+.|.+++... -...........+.|.++.
T Consensus 217 ~~p~~~~g~pi~~y--------------------------------~v~~~~~~~~~----~~~~~~~~~~~~~~i~~l~ 260 (389)
T 2jll_A 217 NKPDSHGGVPIHHY--------------------------------QVDVKEVASEI----WKIVRSHGVQTMVVLNNLE 260 (389)
T ss_dssp ECCSCCTTSCEEEE--------------------------------EEEEEETTCSC----CEEEECSTTCSEEEECSCC
T ss_pred eCCCCCCCcceEEE--------------------------------EEEEEECCCcc----cEEeeccCCcceEEECCcc
Confidence 99988888888777 24666555311 1122223344579999999
Q ss_pred ecCCceEEEEEEEcCCCceeEEEEEEEec----CCCCCCCCcccccccCCeEEEEeeCCCCCCCCCcceEEEEEEecCCC
Q psy7039 420 RATDSGSYTIQLVNTVGSDSASCKVYVVD----KPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATG 495 (516)
Q Consensus 420 ~~~~~g~y~c~a~n~~G~~s~s~~l~v~~----~p~~P~~~l~~~~~~~~~~~l~W~~p~~~~~~~i~~Y~v~~~~~~~~ 495 (516)
+ .+.|.|+|.|.|..|.+..+..+.+.. +|.+| .+.....+.+++.|+|++|. +++++|.+|.|+|+..+..
T Consensus 261 ~-~~~y~~~v~A~N~~G~~~~s~~~~~~t~~~~~p~~p--~~~~~~~~~~~v~l~W~~p~-~~~~~i~~Y~v~~~~~~~~ 336 (389)
T 2jll_A 261 P-NTTYEIRVAAVNGKGQGDYSKIEIFQTLPVREPSPP--SIHGQPSSGKSFKLSITKQD-DGGAPILEYIVKYRSKDKE 336 (389)
T ss_dssp T-TCEEEEEEEEEESSCBCCCCCCEEEECCCCCCCCCC--CEEEEEETTTEEEEEECCCC-CCSSCCCEEEEEEEC----
T ss_pred C-CCEEEEEEEEEcCCccCCCCcceEEEecCCCCCCCC--ccccccCcCCEEEEEEECCC-CCCCcccEEEEEEEeCCCC
Confidence 9 999999999999999876555555554 34444 35556678899999999875 7788999999999986554
Q ss_pred c
Q psy7039 496 V 496 (516)
Q Consensus 496 ~ 496 (516)
.
T Consensus 337 ~ 337 (389)
T 2jll_A 337 D 337 (389)
T ss_dssp -
T ss_pred c
Confidence 4
|
| >2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A | Back alignment and structure |
|---|
Probab=99.98 E-value=5.6e-30 Score=244.80 Aligned_cols=267 Identities=19% Similarity=0.263 Sum_probs=222.7
Q ss_pred CCCccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEee
Q psy7039 112 LAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQT 191 (516)
Q Consensus 112 ~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~ 191 (516)
.+|.+. ..+..+.+.+|+.+.|.|.+. +.|.+.+.|++++..+....++.+..
T Consensus 4 ~pP~~~-~~p~~~~~~~G~~v~l~C~~~--------------------------g~p~~~v~W~~~~~~~~~~~~~~~~~ 56 (284)
T 2rik_A 4 APPFFD-LKPVSVDLALGESGTFKCHVT--------------------------GTAPIKITWAKDNREIRPGGNYKMTL 56 (284)
T ss_dssp CCCEEE-ECCCCEEEETTCCEEEEEEEE--------------------------SSSCCEEEEEETTEECCSSSSEEEEE
T ss_pred CCCEEE-ccccceEecCCCcEEEEEEEE--------------------------cCCCCEEEEEECCEECcCCCcEEEEE
Confidence 467666 566778999999999999999 88999999999999998888887777
Q ss_pred cCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEEeecee---e-----eeccccCCceEEEEEEEEccCCCCCceecc
Q psy7039 192 TKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVTGTE---F-----TDNNVHEGKAYEYRVSAVNAAGTEKPKISL 263 (516)
Q Consensus 192 ~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~~~~~---~-----~~~~l~~g~~~~~~~~~~~~~g~p~p~i~W 263 (516)
.+....|.|.+++.+|+|.|+|.+.|..|.......+.+.. + ....+..|+.+.+.|.+ .|.|.+.+.|
T Consensus 57 ~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~v~~g~~~~l~C~~---~g~p~~~v~W 133 (284)
T 2rik_A 57 VENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKI---GGSPEIKVLW 133 (284)
T ss_dssp ETTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCCEEEECCCSEEEEETTCCEEEEEEE---ESSSCCEEEE
T ss_pred cCCEEEEEEecCCcccCEEEEEEEEECCceEEEEEEEEccCCCcccccCCCceEecCCceEEEEEEE---eeeCCCEEEE
Confidence 77788999999999999999999999888766555443321 1 12236789999999998 6889999999
Q ss_pred ccc-----ccceEEEEEecceeeEEEccCCCCCceEEEEEEEecCCCcceeEEEEEecCCCCCCCCceeeeccCCeeEEE
Q psy7039 264 DAL-----IGKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMS 338 (516)
Q Consensus 264 ~~~-----~~~~~~~~~~~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~ 338 (516)
.+. ...............|.|.++..+|+|.|+|.|.|..|.....+.|.|..+|.....
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~--------------- 198 (284)
T 2rik_A 134 YKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKK--------------- 198 (284)
T ss_dssp EETTEECCCSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEEECCCBCCSC---------------
T ss_pred EECCEECcCCCcEEEEEcCCEEEEEECCCCcccCEEEEEEEEcCCCceeEEEEEEEecCCcceeC---------------
Confidence 652 233444555667789999999999999999999999998888888888876644322
Q ss_pred ecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCc
Q psy7039 339 WKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSA 418 (516)
Q Consensus 339 W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~ 418 (516)
+....+..|+.+.|.|.+.|.|.+.+.|++++..+..+.++.+........|.|.++
T Consensus 199 -----------------------~~~~~~~~g~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v 255 (284)
T 2rik_A 199 -----------------------PHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNV 255 (284)
T ss_dssp -----------------------CCCEEECTTCCEEEEEECBSSSCCEEEEEETTEEECBTTTEEEEEETTEEEEEECSC
T ss_pred -----------------------CCcceecCCCeEEEEEEEEecCCCEEEEEECCEECcCCCCEEEEEcCCEEEEEEcCC
Confidence 234567899999999999999999999999999998888888877777789999999
Q ss_pred eecCCceEEEEEEEcCCCceeEEEEEEEe
Q psy7039 419 KRATDSGSYTIQLVNTVGSDSASCKVYVV 447 (516)
Q Consensus 419 ~~~~~~g~y~c~a~n~~G~~s~s~~l~v~ 447 (516)
.. .|.|.|+|.|.|..|....++.|.|+
T Consensus 256 ~~-~d~G~Y~C~a~N~~G~~~~~~~l~V~ 283 (284)
T 2rik_A 256 DS-ADIGEYQCKASNDVGSYTCVGSITLK 283 (284)
T ss_dssp CG-GGCEEEEEEEEETTEEEEEEEEEEEC
T ss_pred Cc-ccCEEEEEEEEeCCCceeEEEEEEEc
Confidence 99 99999999999999999988888875
|
| >3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=3.9e-30 Score=257.22 Aligned_cols=302 Identities=22% Similarity=0.251 Sum_probs=222.1
Q ss_pred CcEEEeCCC-cCCCeEEEEEEEecCCCCCCCCCCCcceEeccCCCCCccccCcccceEEecCCeEEEEEeeeeccccccC
Q psy7039 69 ETSCTVPGL-IEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKS 147 (516)
Q Consensus 69 ~~~~~i~~l-~~~~~y~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~ 147 (516)
..++.|.+. +..|.|.|+|.|.|..|........+.+... +.+.......+.+.+|+.+.|.|....
T Consensus 61 ~g~l~i~~~~~~~D~G~Y~C~A~N~~G~~~s~~~~l~v~~~-----~~~~~~~~~~~~v~~G~~~~l~C~~~~------- 128 (384)
T 3kld_A 61 DGSLLINNPNKTQDAGTYQCIATNSFGTIVSREAKLQFAYL-----ENFKTRTRSTVSVRRGQGMVLLCGPPP------- 128 (384)
T ss_dssp TTEEEEESCCHHHHCEEEEEEEEETTEEEECCCEEEEEEEE-----CCCSCCCCCCEEEEETCCEEECCCCCS-------
T ss_pred CCEEEEcCCCCcccCEEEEEEEEcCcccEEecceEEEEecc-----cccccCCCCceeEEcCCCeEEecCCCC-------
Confidence 345667665 7889999999999988764322222222211 112213345578999999999997651
Q ss_pred ccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEE-
Q psy7039 148 PLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASA- 226 (516)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~- 226 (516)
+.+.+.+.|++++..+....+..+. .....|.|.+++.+|+|.|+|.+.|..+......
T Consensus 129 ------------------~~~~~~~~W~~~~~~~~~~~~~~~~--~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~ 188 (384)
T 3kld_A 129 ------------------HSGELSYAWIFNEYPSYQDNRRFVS--QETGNLYIAKVEKSDVGNYTCVVTNTVTNHKVLGP 188 (384)
T ss_dssp ------------------EESCEEEEEEETTEECCCSSSEEEC--TTTCCEEESSCCGGGCEEEEEEEEETTTTEEEECC
T ss_pred ------------------CCCCeEEEEEECCCCCEeeccEEEE--cCCCcEEEeecCHHHCceEEEEEecccccceeeCC
Confidence 4567899999999887655444332 2345799999999999999999999876543210
Q ss_pred ----Eee--------ceee-----eeccccCCceEEEEEEEEccCCCCCceecccccccceE--EEEEecceeeEEEccC
Q psy7039 227 ----HVT--------GTEF-----TDNNVHEGKAYEYRVSAVNAAGTEKPKISLDALIGKRI--KEFVTSTTASLNIKNS 287 (516)
Q Consensus 227 ----~~~--------~~~~-----~~~~l~~g~~~~~~~~~~~~~g~p~p~i~W~~~~~~~~--~~~~~~~~~~l~i~~l 287 (516)
.+. ...+ ....+.+|+.+.|.|.+ .|.|.|.+.|.+..+... ........+.|.|.++
T Consensus 189 ~~~~~v~~~~~~~~~~p~~~~~~~~~~~~~~G~~v~l~C~~---~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~L~I~~v 265 (384)
T 3kld_A 189 PTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLECFA---LGNPVPTILWRRADGKPIARKARRHKSNGILEIPNF 265 (384)
T ss_dssp CEEEEEEEEEECCCEEEEEEEECCSEEEEETTSCEEEEEEE---EEESCCEEEEEETTCCCCCTTCEECTTSCEEEECSC
T ss_pred ceEEEEccCCcccccCCceeecCCCceEecCCCcEEEEEEE---eecCCCcEEEEeCCCccccccceecCCCcEEEECCC
Confidence 000 0000 12345689999999998 788999999975332211 1122345678999999
Q ss_pred CCCCceEEEEEEEecCCCcceeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEE
Q psy7039 288 VRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTV 367 (516)
Q Consensus 288 ~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v 367 (516)
..+|+|.|+|.|.|..|.......|.|...|... ..+.+..+
T Consensus 266 ~~~D~G~Y~C~a~N~~G~~~~~~~l~v~~~P~~~--------------------------------------~~~~~~~v 307 (384)
T 3kld_A 266 QQEDAGSYECVAENSRGKNVAKGQLTFYAQPNWV--------------------------------------QIINDIHV 307 (384)
T ss_dssp CGGGCEEEEEEEEETTEEEEEEEEEEEEEEEEEE--------------------------------------ECCCCEEE
T ss_pred ChhhCEEEEEEEEcCCCeEEEEEEEEEecCCccc--------------------------------------cCCCceEe
Confidence 9999999999999999998888888887655321 12244678
Q ss_pred EcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEEEEe
Q psy7039 368 LAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVV 447 (516)
Q Consensus 368 ~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~v~ 447 (516)
..|+.+.|.|.+.|.|.|.+.|++++..+....++.+. . ..|.|.++.. .|+|.|+|.|.|..|....++.|.|.
T Consensus 308 ~~g~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~--~--~~L~i~~v~~-~D~G~Y~C~A~N~~G~~~~~a~L~V~ 382 (384)
T 3kld_A 308 AMEESVFWECKANGRPKPTYRWLKNGDPLLTRDRIQIE--Q--GTLNITIVNL-SDAGMYQCVAENKHGVIFSSAELSVI 382 (384)
T ss_dssp CTTCCEEEECEEEEESCCEEEEEETTEECCCBTTEEEE--T--TEEEESSCCG-GGCEEEEEEEEETTEEEEEEEEEEEC
T ss_pred cCCCCEEEEeECCccCCCeEEEEECCEECCCCccEEEe--C--CEEEEeecCh-hhCEEEEEEEEeCCceEEeceEEEEe
Confidence 89999999999999999999999999998777776653 2 2699999999 99999999999999999999999885
Q ss_pred c
Q psy7039 448 D 448 (516)
Q Consensus 448 ~ 448 (516)
.
T Consensus 383 ~ 383 (384)
T 3kld_A 383 A 383 (384)
T ss_dssp -
T ss_pred c
Confidence 3
|
| >3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-29 Score=254.86 Aligned_cols=303 Identities=20% Similarity=0.222 Sum_probs=223.0
Q ss_pred CCcEEEeCCC-----cCCCeEEEEEEEecCCCCCCCCCCCcceEeccCCCCCccccCcccceEEecCCeEEEEEeeeecc
Q psy7039 68 GETSCTVPGL-----IEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAPRIDRSTLNDVKIKAGQSFSFDVKEFREL 142 (516)
Q Consensus 68 ~~~~~~i~~l-----~~~~~y~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~ 142 (516)
...++.|.++ +..|.|.|+|.|.|..+....+ ....+.+. .+|.+. ..+..+.+.+|+.+.|.|.+.
T Consensus 75 ~~~~l~i~~~~~~~~~~~D~G~Y~C~~~~~~~~~~~s-~~~~l~v~---~p~~~~-~~~~~~~~~~G~~v~l~C~~~--- 146 (403)
T 3laf_A 75 PNGSLLIQNILHSRHHKPDEGLYQCEASLGDSGSIIS-RTAKVMVA---GPLRFL-SQTESITAFMGDTVLLKCEVI--- 146 (403)
T ss_dssp TTSCEEECSCCCBTTBCSSCEEEEEEEECGGGCEEEC-CCEEEEEC---CCCEEC-SCCCCEEEETTSCEEECCCEE---
T ss_pred cCCcEEEeeeeccCCCCCcceEEEEEEEeCCCccEEE-EEEEEEec---CCCccc-cCCCcEEEEcCCeEEEEEEEc---
Confidence 3556777777 6789999999998643322212 22223332 255555 566778999999999999999
Q ss_pred ccccCccccccccccCccceeecCcCceeeEEeeCCeeeccC---CceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCC
Q psy7039 143 SYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIG---GRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNL 219 (516)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~---~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~ 219 (516)
+.|.+.+.|++++..+... .+... .....|.|.+++.+|+|.|+|.+.|..
T Consensus 147 -----------------------~~p~~~v~W~~~~~~~~~~~~~~~~~~---~~~~~L~i~~~~~~d~G~Y~C~~~n~~ 200 (403)
T 3laf_A 147 -----------------------GDPMPTIHWQKNQQDLNPIPGDSRVVV---LPSGALQISRLQPGDSGVYRCSARNPA 200 (403)
T ss_dssp -----------------------CSSCCEEEEEESSSBCCCCTTCCSEEE---CTTSCEEECSCCGGGCEEEEEEEECSS
T ss_pred -----------------------ccCCCeEEEEECCEeccccCCceEEEE---cCCceEEEcccccccCEEEEEEEEcCC
Confidence 8999999999998877432 22222 233489999999999999999999977
Q ss_pred CceE---EEEEeece-------ee----eeccccCCceEEEEEEEEccCCCCCceecccccccc---eEEEEEecceeeE
Q psy7039 220 GTAT---ASAHVTGT-------EF----TDNNVHEGKAYEYRVSAVNAAGTEKPKISLDALIGK---RIKEFVTSTTASL 282 (516)
Q Consensus 220 g~~~---~~~~~~~~-------~~----~~~~l~~g~~~~~~~~~~~~~g~p~p~i~W~~~~~~---~~~~~~~~~~~~l 282 (516)
+... ..+.+... .+ ....+.+|+.+.+.|.+ .|.|.|.+.|.+.... ............|
T Consensus 201 ~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~~~~g~~~~l~C~~---~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~L 277 (403)
T 3laf_A 201 STRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKDAVLECCV---SGYPPPSFTWLRGEEVIQLRSKKYSLLGGSNL 277 (403)
T ss_dssp CCCBCCCEEEEEECCCCCCEEEEEEECCCCEEEETTSCEEECCEE---EEESCCEEEEEETTEECCCSSSSEEEETTTEE
T ss_pred CceeccceeEEEecCCCcccCceEecCCCceEecCCCcEEEEEEc---CCCCCCeEEEEECCeeccCCCceEEECCccEE
Confidence 6532 22221110 11 12345689999999998 6788999999652110 0000111234679
Q ss_pred EEccCCCCCceEEEEEEEecCCCcceeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeecccccccccc
Q psy7039 283 NIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSI 362 (516)
Q Consensus 283 ~i~~l~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~ 362 (516)
.|.++..+|.|.|+|.|.|..|.....+.|.|..+|.... .+
T Consensus 278 ~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~--------------------------------------~~ 319 (403)
T 3laf_A 278 LISNVTDDDSGTYTCVVTYKNENISASAELTVLVPPWFLN--------------------------------------HP 319 (403)
T ss_dssp EECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEEEEEEEE--------------------------------------CC
T ss_pred EEeCCCHHHCEEEEEEEEcCCCceEEEEEEEEECCCcEee--------------------------------------cC
Confidence 9999999999999999999999888888888876553211 12
Q ss_pred ccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEEE
Q psy7039 363 RDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASC 442 (516)
Q Consensus 363 ~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~ 442 (516)
....+..|+.+.|.|.+.|.|.+.+.|++++..+....++.+.. ...|.|.++.. .|.|.|+|.|.|..|....++
T Consensus 320 ~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~---~~~L~i~~v~~-~d~G~Y~C~a~N~~G~~~~~~ 395 (403)
T 3laf_A 320 SNLYAYESMDIEFECAVSGKPVPTVNWMKNGDVVIPSDYFQIVG---GSNLRILGVVK-SDEGFYQCVAENEAGNAQSSA 395 (403)
T ss_dssp CCEECCTTCCEEECCEEEEESCCEEEEEETTEECCCSSSEEEET---TTEEEESSCCG-GGCEEEEEEEEETTEEEEEEE
T ss_pred cceEEecCCeEEEEEEEeeccCCEEEEEECCEECCCCCcEEEec---CccEEEecccc-ccCEEEEEEEEcCCceEEEEE
Confidence 34567889999999999999999999999999887666665542 24699999999 999999999999999999999
Q ss_pred EEEEecC
Q psy7039 443 KVYVVDK 449 (516)
Q Consensus 443 ~l~v~~~ 449 (516)
.|.|..+
T Consensus 396 ~l~V~~P 402 (403)
T 3laf_A 396 QLIVPKP 402 (403)
T ss_dssp EEECCCC
T ss_pred EEEEeCC
Confidence 9988764
|
| >1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-29 Score=252.95 Aligned_cols=300 Identities=23% Similarity=0.277 Sum_probs=222.2
Q ss_pred CcEEEeCCCcC-CCeEEEEEEEecCCCCCCCCCCCcceEeccCCCCCccccCcccceEEecCCeEEEEEeeeeccccccC
Q psy7039 69 ETSCTVPGLIE-GETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKS 147 (516)
Q Consensus 69 ~~~~~i~~l~~-~~~y~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~ 147 (516)
...|.|.++.. .|.|.|+|.|.|..|........+.+.. .|.+.......+.+.+|+.+.|.|...+
T Consensus 60 ~~~L~i~~~~~~~D~G~Y~C~a~n~~g~~~s~~~~l~v~~-----~~~~~~~~~~~~~v~~G~~v~l~C~~~~------- 127 (382)
T 1cs6_A 60 AGDLVISNPVKAKDAGSYQCVATNARGTVVSREASLRFGF-----LQEFSAEERDPVKITEGWGVMFTCSPPP------- 127 (382)
T ss_dssp TTEEEEESCCHHHHCEEEEEEEEETTEEEECCCEEEEEEE-----ECCCCSSCCCCEEEETTSCEEECCCCCS-------
T ss_pred CCeEEEecccccccCEEEEEEEEcCCcEEEecceEEEeec-----cccccccCCCceEEecCCcEEEEeCCCC-------
Confidence 45799999886 9999999999998775432222222222 1222223456688999999999998641
Q ss_pred ccccccccccCccceeecCcCceeeEEeeCCeeecc--CCceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEE
Q psy7039 148 PLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQI--GGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATAS 225 (516)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~--~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~ 225 (516)
+.|.+.+.|++++..+.. ..+..+ ......|.|.+++.+|+|.|+|.+.|..|.....
T Consensus 128 ------------------~~p~~~i~W~~~~~~~~~~~~~~~~~--~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~~~ 187 (382)
T 1cs6_A 128 ------------------HYPALSYRWLLNEFPNFIPADGRRFV--SQTTGNLYIAKTEASDLGNYSCFATSHIDFITKS 187 (382)
T ss_dssp ------------------EESCCEEEEEESSTTCBCCCCSSEEE--CTTTCCEEESSCCGGGCEEEEEEEEEEETTEEEE
T ss_pred ------------------CCCCcEEEEEECCCccccccCceEEE--ecCceEEEEEeeCcccCeeEEEEEEEccccccce
Confidence 568889999998876532 233322 3344689999999999999999999877543222
Q ss_pred E-------Eee-------ceee-----eeccccCCceEEEEEEEEccCCCCCceecccccccceEEEEEecceeeEEEcc
Q psy7039 226 A-------HVT-------GTEF-----TDNNVHEGKAYEYRVSAVNAAGTEKPKISLDALIGKRIKEFVTSTTASLNIKN 286 (516)
Q Consensus 226 ~-------~~~-------~~~~-----~~~~l~~g~~~~~~~~~~~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~l~i~~ 286 (516)
. .+. ...+ ....+.+|+.+.+.|.+ .|.|.|.+.|.+..+... .........|.|.+
T Consensus 188 ~~s~~~~l~v~~~~~~~~~P~~~~~~~~~~~~~~G~~v~l~C~~---~g~p~~~i~W~~~~~~~~-~~~~~~~~~L~i~~ 263 (382)
T 1cs6_A 188 VFSKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQMVTLECFA---FGNPVPQIKWRKLDGSQT-SKWLSSEPLLHIQN 263 (382)
T ss_dssp EECCCEEEEEESCCCCCEEEEEEECCCSEEEEETTCCEEEECEE---EEESCCEEEEEECCSCCS-CCCSBSSSEEEECS
T ss_pred eEccceeeccchhhcccCCCceeccCCCceEEeCCCeEEEEEEE---ccCCCCEEEEEECCcccc-cEEecCCcEEEEcc
Confidence 1 110 0111 13346689999999998 677899999965332211 02234567899999
Q ss_pred CCCCCceEEEEEEEecCCCcceeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEE
Q psy7039 287 SVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMT 366 (516)
Q Consensus 287 l~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~ 366 (516)
+..+|.|.|+|.|.|..|.....+.|.|..+|.... .+....
T Consensus 264 ~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~--------------------------------------~~~~~~ 305 (382)
T 1cs6_A 264 VDFEDEGTYECEAENIKGRDTYQGRIIIHAQPDWLD--------------------------------------VITDTE 305 (382)
T ss_dssp CCGGGCEEEEEEEEETTEEEEEEEEEEEEEEEEEEE--------------------------------------CCCCEE
T ss_pred CChhhCEEEEEEEEcCCCeEEEEEEEEEecCCCccc--------------------------------------CCCccE
Confidence 999999999999999999888888888876553211 123467
Q ss_pred EEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEEEE
Q psy7039 367 VLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYV 446 (516)
Q Consensus 367 v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~v 446 (516)
+..|+.+.|.|.+.|.|.+.+.|++++..+....++.+.. ..|.|.++.. .|.|.|+|.|.|..|....++.|.|
T Consensus 306 ~~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~----~~L~i~~v~~-~d~G~Y~C~a~N~~G~~~~~~~l~V 380 (382)
T 1cs6_A 306 ADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVSG----GELRFSKLVL-EDSGMYQCVAENKHGTVYASAELTV 380 (382)
T ss_dssp EETTCCEEEECEEEEESCCEEEEEETTEECCCCSSEEEET----TEEEESSCCG-GGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred EcCCCeEEEEEEeeeecCCEEEEEECCEECCCCceEEEEC----CEEEECcCCc-ccCEEEEEEEEeCCCeEEEEEEEEE
Confidence 8899999999999999999999999999987777766532 3699999999 9999999999999999999999888
Q ss_pred e
Q psy7039 447 V 447 (516)
Q Consensus 447 ~ 447 (516)
.
T Consensus 381 ~ 381 (382)
T 1cs6_A 381 Q 381 (382)
T ss_dssp E
T ss_pred e
Confidence 5
|
| >2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-26 Score=244.89 Aligned_cols=330 Identities=12% Similarity=0.113 Sum_probs=229.2
Q ss_pred CcEEEeCCCcCCCeEEEEEEEecCCCCCCCCCCCcceEeccCCCCCccccCcccceEEecCCeEEEEEeeeeccccccCc
Q psy7039 69 ETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSP 148 (516)
Q Consensus 69 ~~~~~i~~l~~~~~y~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~ 148 (516)
...|.|.+++..|.|.|+|.|.|..|... ....+.+. .+|.+. ..+..+.+.+|+.+.|.|.+.
T Consensus 74 ~~~L~I~~v~~~D~G~Y~C~~~n~~~~~~---~~~~l~V~---~~p~~~-~~~~~~~v~~G~~v~l~C~~~--------- 137 (585)
T 2ocw_A 74 TFVVNIAQLSQDDSGRYKCGLGINSRGLS---FDVSLEVS---QGPGLL-NDTKVYTVDLGRTVTINCPFK--------- 137 (585)
T ss_pred EEEEEECCCCcccCEEEEEEcccCCCCce---EEEEEEEe---cCcccc-CCCccEEEEcCCCEEEEEEec---------
Confidence 45799999999999999999988766431 12222222 356665 667788899999999999998
Q ss_pred cccccccccCccceeecCc-CceeeEEeeCCeeec-------------cCCceEEeecCC---eeEEEeccCCCCCCeeE
Q psy7039 149 LRALGVRANSTKGWVKLSE-PFLNHGWSINGQVCQ-------------IGGRADVQTTKS---ETVLDIPFCSRSDTGHY 211 (516)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~-p~~~i~W~~~~~~~~-------------~~~~~~~~~~~~---~~~l~i~~~~~~d~g~Y 211 (516)
+. +.+.+.|++++.... ...|+.+...+. ..+|.|.+++.+|+|.|
T Consensus 138 -----------------~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y 200 (585)
T 2ocw_A 138 -----------------TENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIRLDIQGTGQLLFSVVINQLRLSDAGQY 200 (585)
T ss_pred -----------------CCCCCccEEEEECCCCCceEEecCCcccCccccCcEEEEeccCCCcEEEEEEccCChhHCeEE
Confidence 54 457799999875321 124455543332 34899999999999999
Q ss_pred EEEEEcCCCceEEEEEeecee--eeeccccCCceEEEEEEEEccCCC-CC-ceeccc-ccc-----------------cc
Q psy7039 212 SLTLENNLGTATASAHVTGTE--FTDNNVHEGKAYEYRVSAVNAAGT-EK-PKISLD-ALI-----------------GK 269 (516)
Q Consensus 212 ~c~~~~~~g~~~~~~~~~~~~--~~~~~l~~g~~~~~~~~~~~~~g~-p~-p~i~W~-~~~-----------------~~ 269 (516)
+|.+.|..|.......+.+.. .....+.+|..+.|.|.+ .+. +. +.+.|. +.. ..
T Consensus 201 ~C~a~n~~g~~~~~~~l~V~~~~p~~~~~~~G~~v~l~C~~---~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~~~~~ 277 (585)
T 2ocw_A 201 LCQAGDDSNSNKKNADLQVLKPEPELVYEDLRGSVTFHCAL---GPEVANVAKFLCRQSSGENCDVVVNTLGKRAPAFEG 277 (585)
T ss_pred EEEeccCCccccceEEEEEccCCCceeEEcCCCcEEEEEEc---CCCCCCceEEEEEeCCCCCcceEEeCCCcCCcccCC
Confidence 999999888766555544432 223346789999999985 222 22 677885 321 11
Q ss_pred eEEEEEe--cceeeEEEccCCCCCceEEEEEEEecCCCcc----eeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCC
Q psy7039 270 RIKEFVT--STTASLNIKNSVRKDSGIYKIEAKNDYGIDM----ADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPV 343 (516)
Q Consensus 270 ~~~~~~~--~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~----~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~ 343 (516)
++.+... .....|.|.++..+|+|.|+|.|.|..+... ..+.|.|...|..+.
T Consensus 278 ~~~~~~~~~~g~~~L~i~~v~~~d~G~Y~C~a~n~g~~~~~~~~~~~~l~V~~~p~~~~--------------------- 336 (585)
T 2ocw_A 278 RILLNPQDKDGSFSVVITGLRKEDAGRYLCGAHSDGQLQEGSPIQAWQLFVNEESTIPR--------------------- 336 (585)
T ss_pred ceEeeccCCCcEEEEEEccCChhhCEEEEEEEEcCCCccccCceeeEEEEEeccccccc---------------------
Confidence 2222111 2223799999999999999999999533332 677788877665432
Q ss_pred CCCCCceeeccccccccccccEEEEcCCeEEEEEEEeeecCCce----EEEE--CCe--ecC---------CCCceEEEE
Q psy7039 344 DDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTP----IWTV--NGD--EVS---------PDGRIKFET 406 (516)
Q Consensus 344 ~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i----~W~~--~~~--~l~---------~~~~~~~~~ 406 (516)
.+....+..|+.+.|.|.+.+.|.+.+ .|++ ++. .+. ...++.+..
T Consensus 337 -----------------~~~~~~~~~G~~v~l~C~~~~~p~p~i~~w~~W~~~~~g~~~~l~~~~~~~~~~~~~r~~~~~ 399 (585)
T 2ocw_A 337 -----------------SPTVVKGVAGSSVAVLCPYNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLE 399 (585)
T ss_pred -----------------CCcceEEEeCCcEEEEEecCCCCCccEEEEEEEEccCCCCCceeeeecceeecccCCCEEEec
Confidence 234567889999999999999999976 7998 776 332 133444443
Q ss_pred c--CCeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEEEEecCCCCCCCCcccccccCCeEEEEeeCC
Q psy7039 407 S--ENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQGPLDVSDITPESCSLSWKPP 474 (516)
Q Consensus 407 ~--~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~v~~~p~~P~~~l~~~~~~~~~~~l~W~~p 474 (516)
. .+...|.|.++.. .|.|.|+|.| |..|..+..+.|.|...|.....+..+....++.+.|.|...
T Consensus 400 ~~~~g~~~L~I~~v~~-~D~G~Y~C~a-n~~g~~~~~~~l~V~~~~p~~~~~~~~~v~~G~~v~L~C~~~ 467 (585)
T 2ocw_A 400 EPGNGTFTVILNQLTS-RDAGFYWCLT-NGDTLWRTTVEIKIIEGEPNLKVPGNVTAVLGETLKVPCHFP 467 (585)
T ss_pred cCCCcEEEEEECCCCh-hhCEEEEEcc-cCCCccceeEEEEEecCccccccCCceeEecCCcEEEEEEec
Confidence 2 2334699999999 9999999999 999998888899887543221122334445677888888653
|
| >1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A | Back alignment and structure |
|---|
Probab=99.96 E-value=2.9e-27 Score=252.56 Aligned_cols=319 Identities=14% Similarity=0.185 Sum_probs=229.7
Q ss_pred CCeeEEEecCCCCCCCCceeceEEEEEeCCCC--eEEeEEeecCCcEEEeCCCcCCCeEEEEEEEecCCCCCCCCCCCcc
Q psy7039 27 KDHVDLQWTPPISDGGSPITGYVVEMKDKTGN--WEKAVVVPAGETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAP 104 (516)
Q Consensus 27 ~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~~--~~~~~~~~~~~~~~~i~~l~~~~~y~~~~~a~n~~g~~~~s~~~~~ 104 (516)
.+.+.|.+.... .+ ..+.|...+.. .............|.|.+++..|.|.|+|.|.|..|..... ...
T Consensus 304 g~~v~l~C~~~~----~p---~~v~W~~~g~~l~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~s~--~~~ 374 (642)
T 1e07_A 304 EDAVALTCEPEI----QN---TTYLWWVNNQSLPVSPRLQLSNDNRTLTLLSVTRNDVGPYECGIQNELSVDHSD--PVI 374 (642)
T ss_pred CCcEEEEEECCC----CC---ccEEEEECCccCCCcCCEEEeCCCCEEEEeccCcccCeeEEEEEeCCCCCccee--eEE
Confidence 455889888732 12 23445444431 11111122245789999999999999999999988754322 122
Q ss_pred eEeccCCCCCccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccC
Q psy7039 105 IVAKPKNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIG 184 (516)
Q Consensus 105 ~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~ 184 (516)
+.+.. +|.+....+....+.+|+.+.|.|.+. +.|.+.+.|++++..+..
T Consensus 375 l~V~~---~p~~~~~~~~~~~~~~g~~~~l~C~~~--------------------------g~p~~~i~W~~~g~~~~~- 424 (642)
T 1e07_A 375 LNVLY---GPDDPTISPSYTYYRPGVNLSLSCHAA--------------------------SNPPAQYSWLIDGNIQQH- 424 (642)
T ss_pred EEEEc---CCCCCeecCCceEecCCCcEEEEEEcC--------------------------ccCCCeEEEEECCEEcCC-
Confidence 33322 222211334567789999999999999 999999999999987652
Q ss_pred CceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEE--Eeec------eee---eeccccCCceEEEEEEEEcc
Q psy7039 185 GRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASA--HVTG------TEF---TDNNVHEGKAYEYRVSAVNA 253 (516)
Q Consensus 185 ~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~--~~~~------~~~---~~~~l~~g~~~~~~~~~~~~ 253 (516)
...|.|.+++.+|+|.|+|.+.|..|....+. .+.. ..+ ....+.+|+.+.|.|.+
T Consensus 425 ----------~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~~~v~v~~~~~~p~i~~~~~~~v~~g~~v~l~C~~--- 491 (642)
T 1e07_A 425 ----------TQELFISNITEKNSGLYTCQANNSASGHSRTTVKTITVSAELPKPSISSNNSKPVEDKDAVAFTCEP--- 491 (642)
T ss_pred ----------CceEEEccCChhhCeEEEEEEEcCCCCCcccceEEEEEeccCCCceEecCCceeecCCCeEEEEEEC---
Confidence 24699999999999999999999987654332 1111 111 12346689999999998
Q ss_pred CCCCCceecccccc---cceEEEEEecceeeEEEccCCCCCceEEEEEEEecCCCcc-eeEEEEEecCCCCCCCCceeee
Q psy7039 254 AGTEKPKISLDALI---GKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDM-ADIEVVVVSKPGPPTGPIDYTT 329 (516)
Q Consensus 254 ~g~p~p~i~W~~~~---~~~~~~~~~~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~-~~~~l~v~~~p~~p~~p~~~~~ 329 (516)
.+ +.+.+.|.+.. .....+........|.|.++...|+|.|+|.|.|..|... ..+.|.|...|..+..
T Consensus 492 ~~-~~~~i~W~~~g~~l~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~~p~~~~~------ 564 (642)
T 1e07_A 492 EA-QNTTYLWWVNGQSLPVSPRLQLSNGNRTLTLFNVTRNDARAYVCGIQNSVSANRSDPVTLDVLYGPDTPII------ 564 (642)
T ss_pred CC-CCcEEEEEECCEeCCCCCcEEEcCCCcEEEEeecChhcCceEEEEeEcCCCCccCCCEEEEEEeCCCccee------
Confidence 43 78899996521 1111222334467899999999999999999999998754 3688888776543321
Q ss_pred ccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEEEEcCC
Q psy7039 330 VTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSEN 409 (516)
Q Consensus 330 ~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~ 409 (516)
.+....+..|+.+.|.|.+.|.|.+.+.|+++|..+..+
T Consensus 565 -------------------------------~~~~~~v~~g~~~~l~C~~~g~p~p~v~W~~~g~~i~~~---------- 603 (642)
T 1e07_A 565 -------------------------------SPPDSSYLSGANLNLSCHSASNPSPQYSWRINGIPQQHT---------- 603 (642)
T ss_pred -------------------------------cCCceeEEcCCcEEEEEEeccCCCCeEEEEECCEECccC----------
Confidence 124467889999999999999999999999999876432
Q ss_pred eEEEEEcCceecCCceEEEEEEEcCCCceeEEEEEEEe
Q psy7039 410 QTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVV 447 (516)
Q Consensus 410 ~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~v~ 447 (516)
..|.|.++.. .|.|.|+|.|.|..|....++.|.|.
T Consensus 604 -~~L~i~~~~~-~d~G~Y~C~a~N~~G~~~~s~~l~V~ 639 (642)
T 1e07_A 604 -QVLFIAKITP-NNNGTYACFVSNLATGRNNSIVKSIT 639 (642)
T ss_pred -ceEEECcccc-cCCeEEEEEEEecccCcceeEEEEEE
Confidence 3699999999 99999999999999998888877775
|
| >2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-27 Score=249.16 Aligned_cols=334 Identities=15% Similarity=0.119 Sum_probs=241.1
Q ss_pred eeCCeeEEEecCCCCCCCCceeceEEEEEeCCCCeEEeEEeecCCcEEEeCCCcCCCeEEEEEEEecCCCCCCCCCCCcc
Q psy7039 25 WDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVVVPAGETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAP 104 (516)
Q Consensus 25 ~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~~~a~n~~g~~~~s~~~~~ 104 (516)
.....+.|.+... + .+.|...+.... .......|.|.+++..|.|.|+|.|.| |. .....
T Consensus 49 ~~G~~v~l~C~~~---~-------~v~W~~~~~~~~----~~~~~~~L~I~~~~~~D~G~Y~C~a~n--g~----~~~~~ 108 (524)
T 2ec8_A 49 RVGDEIRLLCTDP---G-------FVKWTFEILDET----NENKQNEWITEKAEATNTGKYTCTNKH--GL----SNSIY 108 (524)
T ss_dssp CTTSCEEEEEECT---T-------EEEEEEESSSCC----EEECSSEEEESSCCSTTCEEEEEEETT--SC----EEEEE
T ss_pred eCCCeEEEEEeCC---c-------eEEEcCCCcccc----ccCccceEEEcccchhhCEEEEEeecC--Cc----ceEEE
Confidence 4566788888762 1 455555444221 223678999999999999999999988 42 12333
Q ss_pred eEeccCCCCCccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEee-CCeeecc
Q psy7039 105 IVAKPKNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSI-NGQVCQI 183 (516)
Q Consensus 105 ~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~-~~~~~~~ 183 (516)
+.+. .+|.+. ..+..+.+.+|+.+.|.|.+. +.+.+.+.|++ ++..+..
T Consensus 109 l~V~---~p~~~~-~~~~~~~v~~G~~v~l~C~~~--------------------------~~~~~~v~W~~~~g~~l~~ 158 (524)
T 2ec8_A 109 VFVR---DPAKLF-LVDRSLYGKEDNDTLVRCPLT--------------------------DPEVTNYSLKGCQGKPLPK 158 (524)
T ss_dssp EECC---CSSCSB-CCCCCCCEETTSCEEECCCBS--------------------------CCCCSCEEEECSSSCCCCS
T ss_pred EEEC---CCCccc-ccccceEEEcCCeEEEECcCC--------------------------CCccceEEEEccCCcCcCC
Confidence 3333 234443 556678889999999999999 77779999987 7877776
Q ss_pred CCceEEeecCCeeEEEeccCCCCCCe-eEEEEEEcCCCceEE-EEEeec-------eee----eeccccCCceEEEEEEE
Q psy7039 184 GGRADVQTTKSETVLDIPFCSRSDTG-HYSLTLENNLGTATA-SAHVTG-------TEF----TDNNVHEGKAYEYRVSA 250 (516)
Q Consensus 184 ~~~~~~~~~~~~~~l~i~~~~~~d~g-~Y~c~~~~~~g~~~~-~~~~~~-------~~~----~~~~l~~g~~~~~~~~~ 250 (516)
..++.+.. ...|.|.+++.+|+| .|+|.+.|..+.... ...+.+ ..+ ....+.+|+.+.+.|.+
T Consensus 159 ~~~~~~~~---~~~L~i~~~~~~d~G~~Y~C~a~n~~~~~~s~~~~l~V~~~~~~~p~i~~~~~~~~v~~G~~v~L~C~~ 235 (524)
T 2ec8_A 159 DLRFIPDP---KAGIMIKSVKRAYHRLCLHCSVDQEGKSVLSEKFILKVRPAFKAVPVVSVSKASYLLREGEEFTVTCTI 235 (524)
T ss_dssp SCEEEEET---TTEEEEESCCGGGTTCEEEEEEC----CCCCCCEECCEECCCCSCCEEECSCSEEEEETTSCEEEEEEE
T ss_pred CCceeECC---CccEEEeccchhhCCceEEEEEEECCceEEEEEEEEEEEeCCCCCCcEEecCCcceEEcCCcEEEEEEE
Confidence 66665543 347999999999999 999999987665422 222221 112 12357789999999999
Q ss_pred EccCCCCCce-ecccccccc---eE--EEEE-----ecceeeEEEccCCCCCceEEEEEEEecCCCcceeEEEEEecCCC
Q psy7039 251 VNAAGTEKPK-ISLDALIGK---RI--KEFV-----TSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPG 319 (516)
Q Consensus 251 ~~~~g~p~p~-i~W~~~~~~---~~--~~~~-----~~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~ 319 (516)
.|.|.|. +.|.+.... .. .... ......|.|.++..+|+|.|+|.|.|..|.....+.|.|..+|.
T Consensus 236 ---~g~p~p~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~p~ 312 (524)
T 2ec8_A 236 ---KDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVVDKGF 312 (524)
T ss_dssp ---EESSTTCEEEEEETTCSCCCCEEEEEEECSSSCEEEEEEEEESSCCTTTCEEEEEEEECSSCEEEEEEEEEEESSCE
T ss_pred ---ecCCCcEEEEEEeCCCCCccccccccccccCCccceEEEEEECCCCHHHCEEEEEEEEecCCceEEEEEEEEeccCc
Confidence 5778777 999763322 11 1111 23467999999999999999999999999988888888886554
Q ss_pred CCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeeecCCc-eEEEECCeecCC
Q psy7039 320 PPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPT-PIWTVNGDEVSP 398 (516)
Q Consensus 320 ~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~-i~W~~~~~~l~~ 398 (516)
....| .......+..|+.+.|.|.+.|.|.+. +.|++++..+..
T Consensus 313 ~~~~~-----------------------------------~~~~~~~v~~G~~v~l~C~~~g~P~p~~v~W~k~g~~~~~ 357 (524)
T 2ec8_A 313 INIFP-----------------------------------MINTTVFVNDGENVDLIVEYEAFPKPEHQQWIYMNRTFTD 357 (524)
T ss_dssp EEEEE-----------------------------------SSCSEEEECTTCCEEEEEEEEEESCCCEEEEESSSCBCSS
T ss_pred eEeec-----------------------------------CCCceEEEcCCCcEEEEEEEeecCCCcEEEEEECCeeccC
Confidence 31110 112356789999999999999999998 999999988765
Q ss_pred CC-ceEEEEcC----CeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEEEEecCC
Q psy7039 399 DG-RIKFETSE----NQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKP 450 (516)
Q Consensus 399 ~~-~~~~~~~~----~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~v~~~p 450 (516)
.. ++...... ....|.|.++.. .|.|.|+|.|.|..|..+.++.|.|..+|
T Consensus 358 ~~~~~~~~~~~~~~~~~~~L~i~~v~~-~d~G~Y~C~a~N~~g~~~~~~~l~V~~~P 413 (524)
T 2ec8_A 358 KWEDYPKSENESNIRYVSELHLTRLKG-TEGGTYTFLVSNSDVNAAIAFNVYVNTKP 413 (524)
T ss_dssp SBCCEESCCSSSCCEEEEEEEECSCCG-GGCEEEEEEEECSSCEEEEEEEEEECEEE
T ss_pred CccceeEEccCCCceeEEEEEEeecCc-ccCeEEEEEEEecCceEEEEEEEEEecCC
Confidence 54 33332222 246899999999 99999999999999999888999987655
|
| >1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.96 E-value=3.5e-28 Score=243.70 Aligned_cols=297 Identities=19% Similarity=0.181 Sum_probs=216.7
Q ss_pred CCcEEEeCCCcCCCeEEEEEEEecCCCCCCCCCCCcceEeccCCCCCccccCcccceEEecCCeEEEEEee-eecccccc
Q psy7039 68 GETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAPRIDRSTLNDVKIKAGQSFSFDVKE-FRELSYTK 146 (516)
Q Consensus 68 ~~~~~~i~~l~~~~~y~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~-~~~~~~~~ 146 (516)
...+|.|.+++..|.|.|+|.|.|..|........+.+.... .|.+ .+....+.+|+.+.|.|.+ .
T Consensus 60 ~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~s~~~~l~v~~~~---~p~~---~~~~~~~~~G~~v~l~C~~~~------- 126 (395)
T 1bih_A 60 DEGSLVFLRPQASDEGHYQCFAETPAGVASSRVISFRKTYLI---ASPA---KTHEKTPIEGRPFQLDCVLPN------- 126 (395)
T ss_dssp TSCCEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEEEE---CCCC---EEEEECCBTTEEEEECCCCCE-------
T ss_pred CCceEEEecCCCCCCcEEEEEEEeCCCeEEeEEEEEEEEEee---cCCc---CCcceeeeeCCcEEEEecCCC-------
Confidence 466899999999999999999999877543222222222211 2322 3345677899999999996 6
Q ss_pred CccccccccccCccceeecCcCceeeEEeeCCe---eecc----CCceEEeecCCeeEEEeccCCCCCCe---eEEEEEE
Q psy7039 147 SPLRALGVRANSTKGWVKLSEPFLNHGWSINGQ---VCQI----GGRADVQTTKSETVLDIPFCSRSDTG---HYSLTLE 216 (516)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~---~~~~----~~~~~~~~~~~~~~l~i~~~~~~d~g---~Y~c~~~ 216 (516)
+.|.+.+.|++++. .... ..++.+.. ...|.|.+++.+|+| .|+|.+.
T Consensus 127 -------------------~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~---~~~L~i~~v~~~d~G~~~~Y~C~a~ 184 (395)
T 1bih_A 127 -------------------AYPKPLITWKKRLSGADPNADVTDFDRRITAGP---DGNLYFTIVTKEDVSDIYKYVCTAK 184 (395)
T ss_dssp -------------------EESCCEEEEEEEETTSCGGGCCCCCCTTEEECT---TSCEEEEEECGGGCCSSEEEEEEEE
T ss_pred -------------------CCCCCeEEEEecCCCcCcccccccccccEEEcC---CCcEEEEEEeeccCCCceEEEEEEE
Confidence 78999999999751 1111 23343322 337999999999999 9999999
Q ss_pred cCCCceEEEEEe---ec-------------ee--eeeccccCCceEEEEEEEEccCCCCCceeccccccc-------ceE
Q psy7039 217 NNLGTATASAHV---TG-------------TE--FTDNNVHEGKAYEYRVSAVNAAGTEKPKISLDALIG-------KRI 271 (516)
Q Consensus 217 ~~~g~~~~~~~~---~~-------------~~--~~~~~l~~g~~~~~~~~~~~~~g~p~p~i~W~~~~~-------~~~ 271 (516)
|..|........ .. .. .....+.+|+.+.|.|.+ .|.|.|.+.|.+... .++
T Consensus 185 n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~G~~v~l~C~~---~g~p~~~i~W~~~g~~~~~~~~~~~ 261 (395)
T 1bih_A 185 NAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQYVSKDMMAKAGDVTMIYCMY---GSNPMGYPNYFKNGKDVNGNPEDRI 261 (395)
T ss_dssp CTTCSSCEEEEEEEECCCBCCSSCCCCCCEEEEECCSEEEETTSCEEEEEEE---ECSSCCCCEEEETTEECCCCTTSSE
T ss_pred ecccceEEEeeeEEecccccccccccCCcCceecCCceEEECCCcEEEEEEe---ccCCCCeEEEEECCEEcCCCCceeE
Confidence 988875433221 10 00 112346789999999998 788999999965211 111
Q ss_pred EEEEecceeeEEEccCCCCCceEEEEEEEecCCCcce-eEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCce
Q psy7039 272 KEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMA-DIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPI 350 (516)
Q Consensus 272 ~~~~~~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~-~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i 350 (516)
..........|.|.++..+|+|.|+|.|.|..|.... .+.|.|..+|....
T Consensus 262 ~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V~~~P~~~~---------------------------- 313 (395)
T 1bih_A 262 TRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVVSAPKYEQ---------------------------- 313 (395)
T ss_dssp ESCSSSTTSEEEESSCCGGGCEEEEEEECCSSSSCEEEEEEEEEEEEEEEEE----------------------------
T ss_pred EEEecCCCceEEEccCChhhCEEEEEEEEeCCCCceEEEEEEEEEcCCcccc----------------------------
Confidence 1111122347999999999999999999999988655 78888876553311
Q ss_pred eecccccccccccc-EEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEE
Q psy7039 351 TGAPKITSDLSIRD-MTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTI 429 (516)
Q Consensus 351 ~~y~~~~~~~~~~~-~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c 429 (516)
.+.. ..+..|+.+.|.|.+.|.|.+.+.|++++..+..+ ++.+. .+ .|.|.++.. .|.|.|+|
T Consensus 314 ----------~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~-~~~~~--~~--~L~i~~~~~-~d~G~Y~C 377 (395)
T 1bih_A 314 ----------KPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGG-RATVT--DS--GLVIKGVKN-GDKGYYGC 377 (395)
T ss_dssp ----------CCCSEEEECTTSCEEEECEEEEESCCCCEEEETTEECCSS-SEEEE--TT--EEEESSCCS-TTCEEEEE
T ss_pred ----------CCCcceEecCCCeEEEEEEECcccCCeeEEEECCEECCCC-ceEEE--CC--EEEEeeCCc-ccCEEEEE
Confidence 1122 57889999999999999999999999999988654 55443 22 799999999 99999999
Q ss_pred EEEcCCCceeEEEEEEE
Q psy7039 430 QLVNTVGSDSASCKVYV 446 (516)
Q Consensus 430 ~a~n~~G~~s~s~~l~v 446 (516)
.|.|..|....++.|.|
T Consensus 378 ~a~N~~G~~~~~~~l~V 394 (395)
T 1bih_A 378 RATNEHGDKYFETLVQV 394 (395)
T ss_dssp EEEETTEEEEEEEEEEE
T ss_pred EEEccCCCceEEEEEEE
Confidence 99999999988888877
|
| >2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=6.3e-28 Score=241.30 Aligned_cols=292 Identities=19% Similarity=0.211 Sum_probs=213.9
Q ss_pred CCcEEEeCCCcCCC------eEEEEEEEecCCCCCCCCCCCcceEeccCCCCCccccCcccceEEecCCeEEEEEeeeec
Q psy7039 68 GETSCTVPGLIEGE------TYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRE 141 (516)
Q Consensus 68 ~~~~~~i~~l~~~~------~y~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~ 141 (516)
...+|.|.+++..| .|.|+|.|.|..|..... ...+.+. .+|.+. ..+....+.+|+.+.|.|.+.
T Consensus 57 ~~~~L~i~~~~~~d~~~~~d~G~Y~C~a~n~~g~~~s~--~~~v~v~---~~p~~~-~~~~~~~v~~G~~v~l~C~~~-- 128 (388)
T 2v5m_A 57 SDGKLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISR--DVHVRAV---VAQYYE-ADVNKEHVIRGNSAVIKCLIP-- 128 (388)
T ss_dssp STTEEEECCCCGGGCCHHHHEEEEEEEEEETTEEEECC--CEEEEEE---CCCCCC-CBCCCEEEETTSCEEECCBCC--
T ss_pred CCceEEecccChhhccccccCceEEEEEEccCCeEEec--ceEEEEc---cccccc-cCccceeeecCCcEEEEEECc--
Confidence 45679999999887 999999999987753222 2222222 234444 445667899999999999998
Q ss_pred cccccCccccccccccCccceeecCcC---ceeeEEeeCCeeecc-----CCceEEeecCCeeEEEeccCCCCCC-eeEE
Q psy7039 142 LSYTKSPLRALGVRANSTKGWVKLSEP---FLNHGWSINGQVCQI-----GGRADVQTTKSETVLDIPFCSRSDT-GHYS 212 (516)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~p---~~~i~W~~~~~~~~~-----~~~~~~~~~~~~~~l~i~~~~~~d~-g~Y~ 212 (516)
+.+ .+.+.|++++..+.. ..++.+. ....|.|.+++.+|+ |.|+
T Consensus 129 ------------------------~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~---~~~~L~i~~v~~~d~~G~Y~ 181 (388)
T 2v5m_A 129 ------------------------SFVADFVEVVSWHTDEEENYFPGAEYDGKYLVL---PSGELHIREVGPEDGYKSYQ 181 (388)
T ss_dssp ------------------------TTTTTTEEEEEEEETTCCEECSSSCBTTTEEEC---TTSCEEESSCCGGGGGCCEE
T ss_pred ------------------------CCCCCCcceEEEEeCCCcccccccCCCCcEEEc---cCCcEEEecCCccccCeeEE
Confidence 553 489999998876642 2334332 234799999999999 9999
Q ss_pred EEEEcCCCceEE-E-----EEeece------ee-----eeccccCCceEEEEEEEEccCCCCCceecccccccc-e--EE
Q psy7039 213 LTLENNLGTATA-S-----AHVTGT------EF-----TDNNVHEGKAYEYRVSAVNAAGTEKPKISLDALIGK-R--IK 272 (516)
Q Consensus 213 c~~~~~~g~~~~-~-----~~~~~~------~~-----~~~~l~~g~~~~~~~~~~~~~g~p~p~i~W~~~~~~-~--~~ 272 (516)
|.+.|..+.... . +.+... .+ ....+.+|+.+.+.|.+ .|.|.|.+.|.+.... . ..
T Consensus 182 C~~~n~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~v~~G~~v~l~C~~---~g~p~p~v~W~~~~~~~~~~~~ 258 (388)
T 2v5m_A 182 CRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPLELMVAHTISLLCPA---QGFPAPSFRWYKFIEGTTRKQA 258 (388)
T ss_dssp EEEEETTTCCEEECSSCBCEEEECCCSCEEEECCSSCCCCEEEETTSCEEECCCC---EEESCCEEEEEEECTTSSCEEE
T ss_pred EEeccCCCCceeeccccceEEEecCCcCCCCcCccccCCceEEeeCCcEEEEEEC---CCCCCCEEEEEecCCCCccccc
Confidence 999987543221 1 111110 00 12346679999999987 6789999999763111 0 00
Q ss_pred E----EEecceeeEEEccCCCCCceEEEEEEEecCCCcceeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCC
Q psy7039 273 E----FVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGT 348 (516)
Q Consensus 273 ~----~~~~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~ 348 (516)
. ........|.|.++..+|+|.|+|.|.|..|.....+.|.|..+|...
T Consensus 259 ~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~--------------------------- 311 (388)
T 2v5m_A 259 VVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAK--------------------------- 311 (388)
T ss_dssp CCCSSSEEEETTEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEEEEEEEE---------------------------
T ss_pred ccccCceecccCEEEECcCCHHHCeEEEEEEecCCCceeEEEEEEEeCCCccc---------------------------
Confidence 0 011234689999999999999999999999988888888887654321
Q ss_pred ceeeccccccccccccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEE
Q psy7039 349 PITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYT 428 (516)
Q Consensus 349 ~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~ 428 (516)
..+....+..|+.+.|.|.+.|.|.+.+.|++++..+..+ ...|.|.++.. .|.|.|+
T Consensus 312 -----------~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~i~~~----------~~~L~i~~v~~-~d~G~Y~ 369 (388)
T 2v5m_A 312 -----------IDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHS----------ESVLRIESVKK-EDKGMYQ 369 (388)
T ss_dssp -----------EESSEEEECTTSCEEEEEEEEEECCCEEEEEETTEECSCC----------SSEEEESSCCG-GGCEEEE
T ss_pred -----------cCCCcEEecCCCCEEEEEEeccccCCeEEEEECCEECccC----------CCEEEEecCCh-hhCEEEE
Confidence 1123467889999999999999999999999999887542 23699999999 9999999
Q ss_pred EEEEcCCCceeEEEEEEE
Q psy7039 429 IQLVNTVGSDSASCKVYV 446 (516)
Q Consensus 429 c~a~n~~G~~s~s~~l~v 446 (516)
|.|.|..|....++.|.|
T Consensus 370 C~a~N~~G~~~~~~~l~V 387 (388)
T 2v5m_A 370 CFVRNDRESAEASAELKL 387 (388)
T ss_dssp EEEECSSCEEEEEEEEEE
T ss_pred EEEEcCCCcEEEEEEEEe
Confidence 999999999988888876
|
| >3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.2e-28 Score=245.93 Aligned_cols=302 Identities=20% Similarity=0.199 Sum_probs=217.2
Q ss_pred CcEEEeC----CCcCCCeEEEEEEEecCCCCCCCCCCCcceEeccCCCCCccccCcccceEEecCCeEEEEEee-eeccc
Q psy7039 69 ETSCTVP----GLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAPRIDRSTLNDVKIKAGQSFSFDVKE-FRELS 143 (516)
Q Consensus 69 ~~~~~i~----~l~~~~~y~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~-~~~~~ 143 (516)
...+.|. +++..|.|.|+|.|.|..|..... ...+.+.. +|.+.........+.+|+.+.|.|.+ .
T Consensus 72 ~~~l~i~~~~~~~~~~D~G~Y~C~a~n~~g~~~s~--~~~l~V~~---~p~~~~~~~~~~~v~~G~~v~l~C~~~~---- 142 (404)
T 3p3y_A 72 SGTLVIDFRSGGRPEEYEGEYQCFARNKFGTALSN--RIRLQVSK---SPLWPKENLDPVVVQEGAPLTLQCNPPP---- 142 (404)
T ss_dssp SCCCBCCCTTTCCTTSSCEEEEEEEECSSCEEEEE--EEEEEECC---CCCCCCCCCCCEEEETTSCEEECCCCCC----
T ss_pred CceEEEEeccCCCCccCCEEEEEEEEcCCCeEeee--eEEEEEec---cCccccCCCCCeEEccCCcEEEEeCCCC----
Confidence 4445554 788899999999999987654211 22233322 33332234455889999999999998 5
Q ss_pred cccCccccccccccCccceeecCcCceeeEEeeCCeee-ccCCceEEeecCCeeEEEeccCCCCC-CeeEEEEEEcCCCc
Q psy7039 144 YTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVC-QIGGRADVQTTKSETVLDIPFCSRSD-TGHYSLTLENNLGT 221 (516)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~-~~~~~~~~~~~~~~~~l~i~~~~~~d-~g~Y~c~~~~~~g~ 221 (516)
+.|.+.+.|++++... ....++... ....|.|.+++..| +|.|+|.+.|..+.
T Consensus 143 ----------------------~~p~~~v~W~~~~~~~~~~~~~~~~~---~~~~l~i~~v~~~d~~G~Y~C~a~n~~~~ 197 (404)
T 3p3y_A 143 ----------------------GLPSPVIFWMSSSMEPITQDKRVSQG---HNGDLYFSNVMLQDMQTDYSCNARFHFTH 197 (404)
T ss_dssp ----------------------CSSCCEEEEECTTSCBCCCCSSEEEC---TTSCEEESSCCSGGGSSCBEEEEECTTTC
T ss_pred ----------------------CCCCCeEEEeCCCccccCCCCcEEEc---CCCcEEEEeeeeccCCcceEEEEEecccc
Confidence 8899999999987443 333444432 33479999999999 59999999998776
Q ss_pred eEEE-----EEeec--------eee-------eeccccCCceEEEEEEEEccCCCCCceecccccccc--eEEEEEecce
Q psy7039 222 ATAS-----AHVTG--------TEF-------TDNNVHEGKAYEYRVSAVNAAGTEKPKISLDALIGK--RIKEFVTSTT 279 (516)
Q Consensus 222 ~~~~-----~~~~~--------~~~-------~~~~l~~g~~~~~~~~~~~~~g~p~p~i~W~~~~~~--~~~~~~~~~~ 279 (516)
.... +.+.. ..+ ....+.+|+.+.+.|.+ .|.|.|.+.|.+.... ..........
T Consensus 198 ~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~~~~G~~v~l~C~~---~g~p~~~v~W~~~~~~~~~~~~~~~~~~ 274 (404)
T 3p3y_A 198 TIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLECIA---SGVPTPDIAWYKKGGDLPSDKAKFENFN 274 (404)
T ss_dssp CEEECCCBCEEEECCSCCCCCCCCBSSSCSSEEEEEEETTSCEEEECCB---CCSSCCEEEEEETTBCCCTTTEEEEGGG
T ss_pred ceeccCceeEEEeccCCccccCCccccccCCCCCceEecCCCEEEEEEE---CCCCCCcEEEEECCEECCCCcccccccC
Confidence 4322 11110 000 12346789999999987 8889999999652211 0011223456
Q ss_pred eeEEEccCCCCCceEEEEEEEecCCCcceeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccc
Q psy7039 280 ASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSD 359 (516)
Q Consensus 280 ~~l~i~~l~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~ 359 (516)
..|.|.++..+|+|.|+|.|.|..|.....+.|.|..+|...
T Consensus 275 ~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~-------------------------------------- 316 (404)
T 3p3y_A 275 KALRITNVSEEDSGEYFCLASNKMGSIRHTISVRVKAAPYWL-------------------------------------- 316 (404)
T ss_dssp TEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEEEEEEEE--------------------------------------
T ss_pred ceEEEccCCHhHCEEEEEEEEeCCCcEEEEEEEEEeCCCeee--------------------------------------
Confidence 789999999999999999999999998888888887655321
Q ss_pred cccccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCC-ceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCce
Q psy7039 360 LSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDG-RIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSD 438 (516)
Q Consensus 360 ~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~-~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~ 438 (516)
..+....+..|+.+.|.|.+.|.|.+.+.|++++..+.... .......+ ..|.|.++.. .|.|.|+|.|.|..|..
T Consensus 317 ~~~~~~~v~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~--~~L~i~~v~~-~d~G~Y~C~a~N~~G~~ 393 (404)
T 3p3y_A 317 DEPKNLILAPGEDGRLVCRANGNPKPTVQWMVNGEPLQSAPPNPNREVAG--DTIIFRDTQI-SSRAVYQCNTSNEHGYL 393 (404)
T ss_dssp ECCCCEEECTTCCEEEECEEEEESCCEEEEEETTEEGGGSCCCTTEEEET--TEEEESSCCS-SCCCEEEEEEEETTEEE
T ss_pred ccCCcceeecCCcEEEEEEccccCCCceEEEECCEecCCCCCCceEEecC--CEEEEeecCH-HHCEEEEEEEEeCCCcE
Confidence 12244678899999999999999999999999998875432 11112222 2699999999 99999999999999999
Q ss_pred eEEEEEEEec
Q psy7039 439 SASCKVYVVD 448 (516)
Q Consensus 439 s~s~~l~v~~ 448 (516)
..++.|.|.+
T Consensus 394 ~~~~~l~V~d 403 (404)
T 3p3y_A 394 LANAFVSVLD 403 (404)
T ss_dssp EEEEEEEEC-
T ss_pred EEEEEEEEEe
Confidence 9999888864
|
| >1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-25 Score=240.28 Aligned_cols=359 Identities=18% Similarity=0.218 Sum_probs=244.5
Q ss_pred CCCCCCcceEEEeeeCCeeEEEecCCCC-CCCCceeceEEEEEe--CCCCeEEeEEeecCCcEEEeCCCcCCCeEEEEEE
Q psy7039 12 DEPGKPTDLEATDWDKDHVDLQWTPPIS-DGGSPITGYVVEMKD--KTGNWEKAVVVPAGETSCTVPGLIEGETYQFQVR 88 (516)
Q Consensus 12 ~~p~~p~~l~~~~~~~~~v~l~W~~p~~-~~~~~i~~Y~v~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~~~ 88 (516)
...|....|.|.........+.|..... .....+..|...... .+..+.. ......+.+|.|.+++..|.|.|+|+
T Consensus 11 v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~g-r~~~~~~~sL~I~~v~~~D~G~Y~C~ 89 (642)
T 1e07_A 11 VAEGKEVLLLVHNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSG-REIIYPNASLLIQNIIQNDTGFYTLH 89 (642)
T ss_pred ccccccEEEEEccCCCCceEEEEECCcccCCcceEEEEEccccccccCccccC-ceeeccCCcEEECCCCcccCcEEEEE
Confidence 4456677777775555567899976210 111223444433211 0001110 01112356899999999999999999
Q ss_pred EecCCCCCCCCCCCcceEeccCCCCCccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcC
Q psy7039 89 AVNAAGPGEASKPTAPIVAKPKNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEP 168 (516)
Q Consensus 89 a~n~~g~~~~s~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 168 (516)
+.+...... .....+.+.....+|.|.. .....+.+|+.+.|.|.+. + |
T Consensus 90 ~~~~~~~~~--~~~~~l~V~~~~~~p~i~~--~~~~~v~~g~~v~l~C~~~--------------------------~-p 138 (642)
T 1e07_A 90 VIKSDLVNE--EATGQFRVYPELPKPSISS--NNSKPVEDKDAVAFTCEPE--------------------------T-Q 138 (642)
T ss_pred EEcCCCeEE--EEEEEEEecccCCCCcEEc--cCceeEecCCcEEEEEECC--------------------------C-C
Confidence 987532211 1222344444444566542 2345688999999999999 7 8
Q ss_pred ceeeEEeeCCeeeccCCceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCceE-EEEEeece--------eeeecccc
Q psy7039 169 FLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTAT-ASAHVTGT--------EFTDNNVH 239 (516)
Q Consensus 169 ~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~-~~~~~~~~--------~~~~~~l~ 239 (516)
.+.+.|++++..+....++.+.. ....|.|.+++.+|+|.|+|.+.|..|... ....+.+. ......+.
T Consensus 139 ~~~v~W~~~g~~l~~~~~~~~~~--~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~p~~~~~~~~~~~~~ 216 (642)
T 1e07_A 139 DATYLWWVNNQSLPVSPRLQLSN--GNRTLTLFNVTRNDTASYKCETQNPVSARRSDSVILNVLYGPDAPTISPLNTSYR 216 (642)
T ss_pred CeeEEEEECCeECCCCCceEEcC--CCCEEEEeCCCcccCeeEEEEEecCCCCcccceEEEEEEeCCCCcEEecCCcccc
Confidence 89999999999988777766543 346899999999999999999999877532 11222111 11233567
Q ss_pred CCceEEEEEEEEccCCCCCceecccccccceEEEEEecceeeEEEccCCCCCceEEEEEEEecCCCcce--eEEEEEecC
Q psy7039 240 EGKAYEYRVSAVNAAGTEKPKISLDALIGKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMA--DIEVVVVSK 317 (516)
Q Consensus 240 ~g~~~~~~~~~~~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~--~~~l~v~~~ 317 (516)
+|+.+.|.|.+ .|.|.|.+.|.+.. ... .....|.|.++..+|+|.|+|.|.|..|.... .+.+.|...
T Consensus 217 ~G~~~~l~C~~---~g~p~~~i~W~~~g-~~i-----~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~~~v~v~~~ 287 (642)
T 1e07_A 217 SGENLNLSCHA---ASNPPAQYSWFVNG-TFQ-----QSTQELFIPNITVNNSGSYTCQAHNSDTGLNRTTVTTITVYAE 287 (642)
T ss_pred cCCEEEEEEEc---CCCCCcEEEEEECC-eEc-----ccCCceEEecccccCCeEEEEEEEeCCCceEEeeeEEEEEEcc
Confidence 89999999998 88999999997532 111 23567999999999999999999999887544 345555544
Q ss_pred CCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeeecCCceEEEECCeecC
Q psy7039 318 PGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVS 397 (516)
Q Consensus 318 p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~ 397 (516)
+..|.. .......+..|+.+.|.|.+.+.| +.+.|++++..+.
T Consensus 288 ~~~p~i------------------------------------~~~~~~~~~~g~~v~l~C~~~~~p-~~v~W~~~g~~l~ 330 (642)
T 1e07_A 288 PPKPFI------------------------------------TSNNSNPVEDEDAVALTCEPEIQN-TTYLWWVNNQSLP 330 (642)
T ss_pred CCCCEE------------------------------------EcCCceeEecCCcEEEEEECCCCC-ccEEEEECCccCC
Confidence 332210 011223455688899999999876 6999999998887
Q ss_pred CCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCce-eEEEEEEEecCCCCC
Q psy7039 398 PDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSD-SASCKVYVVDKPSPP 453 (516)
Q Consensus 398 ~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~-s~s~~l~v~~~p~~P 453 (516)
.+.++.+.. ....|.|.++.. .|.|.|+|.|.|..|.. +..+.|.|...|..|
T Consensus 331 ~~~~~~~~~--~~~~L~i~~~~~-~d~G~Y~C~a~n~~g~~~s~~~~l~V~~~p~~~ 384 (642)
T 1e07_A 331 VSPRLQLSN--DNRTLTLLSVTR-NDVGPYECGIQNELSVDHSDPVILNVLYGPDDP 384 (642)
T ss_pred CcCCEEEeC--CCCEEEEeccCc-ccCeeEEEEEeCCCCCcceeeEEEEEEcCCCCC
Confidence 666666543 335799999999 99999999999999874 556788887666443
|
| >3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.96 E-value=6e-27 Score=257.09 Aligned_cols=331 Identities=18% Similarity=0.239 Sum_probs=242.9
Q ss_pred CCcEEEeCCCcCCCeEEEEEEEecCCCCCCCCCCCcceEeccCCCCCccccCcccceEEecCCeEEEEEeeeeccccccC
Q psy7039 68 GETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKS 147 (516)
Q Consensus 68 ~~~~~~i~~l~~~~~y~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~ 147 (516)
....|.|.+++..|.|.|+|.|.|..|.... ...+.+.....+|.+. ..+....+.+|+.+.|.|.+.
T Consensus 387 ~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~---~~~l~v~~~~~~p~i~-~~~~~~~v~~G~~v~L~C~~~-------- 454 (816)
T 3dmk_A 387 SESVLRIESVKKEDKGMYQCFVRNDRESAEA---SAELKLGGRFDPPVIR-QAFQEETMEPGPSVFLKCVAG-------- 454 (816)
T ss_dssp CSSEEEESSCCGGGCEEEEEEEECSSCEEEE---CCEEECCCSSCCCEEE-EECCCEEECSSSCEEEEEEEE--------
T ss_pred CCCEEEEcCCCHHHCEEEEEEEECCCCcEEE---EEEEEEccccCCCceE-ecCcceEEcCCCCEEEEEEEe--------
Confidence 4578999999999999999999998764332 2334443334567766 556667889999999999999
Q ss_pred ccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEee-----cCCeeEEEeccCCCCCCeeEEEEEEcCCCce
Q psy7039 148 PLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQT-----TKSETVLDIPFCSRSDTGHYSLTLENNLGTA 222 (516)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~-----~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~ 222 (516)
|.|.+.+.|++++..+....++.... ......|.|.+++.+|+|.|+|.+.|..|..
T Consensus 455 ------------------g~p~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~ 516 (816)
T 3dmk_A 455 ------------------GNPTPEISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVA 516 (816)
T ss_dssp ------------------CSSCCEEEEEETTEECCSCTTEEEEEEECTTSCEEEEEEESSCCTTTCEEEEEEEEETTEEE
T ss_pred ------------------cCCCCEEEEEECCEECCCCCCcccccEEecCCCcEEEEEEeeccccCCEEEEEEEEECCCeE
Confidence 99999999999999988776665431 2234579999999999999999999999887
Q ss_pred EEEEEeeceee------eeccccCCceEEEEEEEEccCCCCCceecccccc-----cceEEEEEecceeeEEEccCC-CC
Q psy7039 223 TASAHVTGTEF------TDNNVHEGKAYEYRVSAVNAAGTEKPKISLDALI-----GKRIKEFVTSTTASLNIKNSV-RK 290 (516)
Q Consensus 223 ~~~~~~~~~~~------~~~~l~~g~~~~~~~~~~~~~g~p~p~i~W~~~~-----~~~~~~~~~~~~~~l~i~~l~-~~ 290 (516)
.....+.+... ....+..|+.+.+.|.+ .|.|.+.+.|.+.. ..... ....+.|.|.++. ..
T Consensus 517 ~~~~~l~V~~~p~~~~~~~~~v~~G~~v~l~C~~---~g~p~~~i~W~k~~~~l~~~~~~~---~~~~~~l~i~~v~~~~ 590 (816)
T 3dmk_A 517 EHSAKLNVYGLPYIRQMEKKAIVAGETLIVTCPV---AGYPIDSIVWERDNRALPINRKQK---VFPNGTLIIENVERNS 590 (816)
T ss_dssp EEEEEEEECSSCEECCCCCEEEETTCCEEEECCE---ECSSEEEEEEEETTEESCCSTTEE---ECTTSEEEESSCCHHH
T ss_pred EEEEEEEEecCCeeEccCCeEEecCCeEEEEEEe---cCCCCCEEEEEECCeEcccCCceE---EecCCeEEEEecCccc
Confidence 76665443221 22345689999999988 78889999996521 11111 2345689999998 68
Q ss_pred CceEEEEEEEecCCCc-ceeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEc
Q psy7039 291 DSGIYKIEAKNDYGID-MADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLA 369 (516)
Q Consensus 291 d~g~y~c~a~n~~g~~-~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~ 369 (516)
|+|.|+|.|.|..|.. ...+.+.+...|..... ......+..
T Consensus 591 d~G~Y~C~a~n~~g~~~~~~~~v~v~~~p~~~~~-------------------------------------~~~~~~~~~ 633 (816)
T 3dmk_A 591 DQATYTCVAKNQEGYSARGSLEVQVMVLPRIIPF-------------------------------------AFEEGPAQV 633 (816)
T ss_dssp HCEEEEEEEEESSSCEEEEEEEEEEECCCCCBCC-------------------------------------CCCSSCEES
T ss_pred cCEEEEEEEEECCCceeeeeEEEEEecCCccccc-------------------------------------cccccccCC
Confidence 9999999999998864 44566666655543211 112345788
Q ss_pred CCeEEEEEEEeeecCC-ceEEEECCeecCCCCceEEE-EcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEEEEe
Q psy7039 370 GEEFTITVPFSGRPKP-TPIWTVNGDEVSPDGRIKFE-TSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVV 447 (516)
Q Consensus 370 g~~~~l~C~~~g~p~~-~i~W~~~~~~l~~~~~~~~~-~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~v~ 447 (516)
|+.+.|.|.+.+.+.+ .+.|++++..+..+..+... .......|.|.++.. .|.|.|+|.|.|..|....++.|.|.
T Consensus 634 G~~v~L~C~~~~~~~~~~i~W~~~g~~l~~~~~~~~~~~~~~~~~L~i~~v~~-~d~G~Y~C~a~N~~g~~~~~~~l~V~ 712 (816)
T 3dmk_A 634 GQYLTLHCSVPGGDLPLNIDWTLDGQAISEDLGITTSRVGRRGSVLTIEAVEA-SHAGNFTCHARNLAGHQQFTTPLNVY 712 (816)
T ss_dssp SCEEEEEEBCCCSSSCCEEEEEETTBCCCGGGTCEEEEETTTEEEEEEESCCG-GGCEEEEEEEECSSCEEEEEEEECEE
T ss_pred CCeEEEEEEEeCCCCCCEEEEEECCeEcCCCCCeeEEEcCCCeeEEEEccCCh-hhCEEEEEEEEeCCccEEEEEEEEEE
Confidence 9999999999876665 89999999888655554443 334567899999999 99999999999999999888889888
Q ss_pred cCCCCCCCCcccccccCCeEEEEee
Q psy7039 448 DKPSPPQGPLDVSDITPESCSLSWK 472 (516)
Q Consensus 448 ~~p~~P~~~l~~~~~~~~~~~l~W~ 472 (516)
.+|..-..+.......++.+.|.+.
T Consensus 713 ~~P~~~~~~~~~~v~~G~~v~l~C~ 737 (816)
T 3dmk_A 713 VPPRWILEPTDKAFAQGSDAKVECK 737 (816)
T ss_dssp EEEEEEECCCCEEEETTCCEEEECE
T ss_pred eCCceeeecccceecCCCcEEEEEE
Confidence 7653210111122234555555554
|
| >2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=4.3e-27 Score=228.33 Aligned_cols=275 Identities=16% Similarity=0.211 Sum_probs=205.3
Q ss_pred CCCccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCc-CceeeEEeeCCeeeccCCceEEe
Q psy7039 112 LAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSE-PFLNHGWSINGQVCQIGGRADVQ 190 (516)
Q Consensus 112 ~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~i~W~~~~~~~~~~~~~~~~ 190 (516)
.+|.|. .+. .+.+.+|+.+.|.|.+. +. |.+.+.|++++..+....++.+.
T Consensus 6 ~~P~~~-~~~-~~~v~~G~~v~l~C~~~--------------------------~~~p~~~v~W~~~~~~~~~~~~~~~~ 57 (317)
T 2y25_A 6 TGPHFV-EYL-SWEVTGECNVLLKCKVA--------------------------NIKKETHIVWYKDEREISVDEKHDFK 57 (317)
T ss_dssp SCCEEE-EEE-EEEEETTTEEEEEEEEE--------------------------SCCTTCEEEEEETTEEECCSCC----
T ss_pred CCCcEe-eee-eEEECCCCeEEEEEEEc--------------------------CCCCCCEEEEEECCeEcCCCCcEEEE
Confidence 467665 333 58899999999999998 66 78999999999998876666553
Q ss_pred ecCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEEeeceee-------eeccccCCceEEEEEEEEc------cC-CC
Q psy7039 191 TTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVTGTEF-------TDNNVHEGKAYEYRVSAVN------AA-GT 256 (516)
Q Consensus 191 ~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~~~~~~-------~~~~l~~g~~~~~~~~~~~------~~-g~ 256 (516)
.....|.|.+++.+|+|.|+|.+.|..|.......+.+..+ ....+..|..+.+.|.+.. .. +.
T Consensus 58 --~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~l~c~~~~~~ 135 (317)
T 2y25_A 58 --DGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEAFKELMMEVCKKIALSATDLKIQSTAEGIQLYSFVTYYV 135 (317)
T ss_dssp ---CCEEEEETTCCSTTCSCEEEEEESSSCEEEEEECCSTHHHHHHHHHHHHHHHTCBCCCEEEECSSEEEEEEEBSSCC
T ss_pred --CCeEEEEEccCCcccCeEEEEEEECCCCcEEEEEEEEEecCccccccCCceecccCCCeEEEeeccccEEEEEeccCC
Confidence 44579999999999999999999999887766654433221 1233456777777776511 11 26
Q ss_pred CCceeccccc-----ccceEEEEEecceeeEEEccCCCCCceEEEEEEEecCCCcceeEEEEEecCC-------------
Q psy7039 257 EKPKISLDAL-----IGKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKP------------- 318 (516)
Q Consensus 257 p~p~i~W~~~-----~~~~~~~~~~~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p------------- 318 (516)
|.+.+.|.+. ...+...........|.|.++...|.|.|+|.|.|..|....++.+.+....
T Consensus 136 p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~~~~~~~~~ 215 (317)
T 2y25_A 136 EDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAA 215 (317)
T ss_dssp SSCEEEEEESSSBCCCCSSEEEEECSSEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEECCEECCCCCCeEEeccCCEEEEEECcCCcccCeeEEEEEEeCCceEEEEEEEeeeeccccchhhcccCCcc
Confidence 8999999652 2334455555666779999999999999999999988887777666653210
Q ss_pred C-CCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeeecCCceEEEECCeecC
Q psy7039 319 G-PPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVS 397 (516)
Q Consensus 319 ~-~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~ 397 (516)
. ....| .+. ...+....+..|+.+.|.|.+.|.|.+.+.|++++..+.
T Consensus 216 ~~~~~~p-~~~------------------------------~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~ 264 (317)
T 2y25_A 216 IAEKNRA-RVL------------------------------GGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALA 264 (317)
T ss_dssp HHTTTSC-EEE------------------------------EBCCSEEEEETTSBBCEEEEEECSSCCEEEEEESSSEEC
T ss_pred cCcCCCC-ccc------------------------------ccCCccEEEEcCCEEEEEEEEecCCCCEEEEEECCEeCC
Confidence 0 00000 000 012345678999999999999999999999999999988
Q ss_pred CCCceEEEEc-CCeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEEEEec
Q psy7039 398 PDGRIKFETS-ENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVD 448 (516)
Q Consensus 398 ~~~~~~~~~~-~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~v~~ 448 (516)
.+.++.+... +....|.|.++.. .|.|.|+|.|.|..|..+.++.|.|..
T Consensus 265 ~~~~~~~~~~~~~~~~L~i~~v~~-~d~G~Y~C~a~N~~g~~~~~~~l~V~~ 315 (317)
T 2y25_A 265 SDDHCNLKFEAGRTAYFTINGVST-ADSGKYGLVVKNKYGSETSDFTVSVFI 315 (317)
T ss_dssp CCSSEEECCBTTTEEEEEEBSCCS-TTCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred CCCcEEEEEcCCCEEEEEECCCCH-HHCEEEEEEEEeCCCeEEEEEEEEEEc
Confidence 7777777655 5667899999999 999999999999999999999998874
|
| >2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.3e-27 Score=248.97 Aligned_cols=309 Identities=14% Similarity=0.106 Sum_probs=203.5
Q ss_pred CCcEEEeCCCcCCCeE-EEEEEEecCCCCCCCCCCCcceEeccCCCCCccccCcccceEEecCCeEEEEEeeeecccccc
Q psy7039 68 GETSCTVPGLIEGETY-QFQVRAVNAAGPGEASKPTAPIVAKPKNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTK 146 (516)
Q Consensus 68 ~~~~~~i~~l~~~~~y-~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~ 146 (516)
....|.|.+++..|.| .|+|.|.|..|........+.+. .....+|.+. ..+....+.+|+.+.|.|.+.
T Consensus 166 ~~~~L~i~~~~~~d~G~~Y~C~a~n~~~~~~s~~~~l~V~-~~~~~~p~i~-~~~~~~~v~~G~~v~L~C~~~------- 236 (524)
T 2ec8_A 166 PKAGIMIKSVKRAYHRLCLHCSVDQEGKSVLSEKFILKVR-PAFKAVPVVS-VSKASYLLREGEEFTVTCTIK------- 236 (524)
T ss_dssp TTTEEEEESCCGGGTTCEEEEEEC----CCCCCCEECCEE-CCCCSCCEEE-CSCSEEEEETTSCEEEEEEEE-------
T ss_pred CCccEEEeccchhhCCceEEEEEEECCceEEEEEEEEEEE-eCCCCCCcEE-ecCCcceEEcCCcEEEEEEEe-------
Confidence 4568999999999999 99999998765443212222222 1223577776 556667899999999999999
Q ss_pred CccccccccccCccceeecCcCcee-eEEeeCCeee--ccCCceEEe---ecCCeeEEEeccCCCCCCeeEEEEEEcCCC
Q psy7039 147 SPLRALGVRANSTKGWVKLSEPFLN-HGWSINGQVC--QIGGRADVQ---TTKSETVLDIPFCSRSDTGHYSLTLENNLG 220 (516)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~p~~~-i~W~~~~~~~--~~~~~~~~~---~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g 220 (516)
+.|.+. +.|++++..+ ....+..+. .......|.|.+++.+|+|.|+|.+.|..|
T Consensus 237 -------------------g~p~p~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g 297 (524)
T 2ec8_A 237 -------------------DVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDSGVFMCYANNTFG 297 (524)
T ss_dssp -------------------ESSTTCEEEEEETTCSCCCCEEEEEEECSSSCEEEEEEEEESSCCTTTCEEEEEEEECSSC
T ss_pred -------------------cCCCcEEEEEEeCCCCCccccccccccccCCccceEEEEEECCCCHHHCEEEEEEEEecCC
Confidence 888776 9999998873 332222222 123357999999999999999999999998
Q ss_pred ceEEEEEeecee---e-------eeccccCCceEEEEEEEEccCCCCCce-ecccccc-----cc-eEEEEEec----ce
Q psy7039 221 TATASAHVTGTE---F-------TDNNVHEGKAYEYRVSAVNAAGTEKPK-ISLDALI-----GK-RIKEFVTS----TT 279 (516)
Q Consensus 221 ~~~~~~~~~~~~---~-------~~~~l~~g~~~~~~~~~~~~~g~p~p~-i~W~~~~-----~~-~~~~~~~~----~~ 279 (516)
.......+.+.. + ....+.+|+.+.+.|.+ .|.|.|. +.|.+.. .. ........ ..
T Consensus 298 ~~~~~~~l~V~~~p~~~~~~~~~~~~~v~~G~~v~l~C~~---~g~P~p~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~ 374 (524)
T 2ec8_A 298 SANVTTTLEVVDKGFINIFPMINTTVFVNDGENVDLIVEY---EAFPKPEHQQWIYMNRTFTDKWEDYPKSENESNIRYV 374 (524)
T ss_dssp EEEEEEEEEEESSCEEEEEESSCSEEEECTTCCEEEEEEE---EEESCCCEEEEESSSCBCSSSBCCEESCCSSSCCEEE
T ss_pred ceEEEEEEEEeccCceEeecCCCceEEEcCCCcEEEEEEE---eecCCCcEEEEEECCeeccCCccceeEEccCCCceeE
Confidence 877665543321 1 13457789999999998 7889999 9996521 11 11111111 34
Q ss_pred eeEEEccCCCCCceEEEEEEEecCCCcceeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccc
Q psy7039 280 ASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSD 359 (516)
Q Consensus 280 ~~l~i~~l~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~ 359 (516)
..|.|.++..+|+|.|+|.|.|..|....++.|.|..+|.....
T Consensus 375 ~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~P~i~~~------------------------------------ 418 (524)
T 2ec8_A 375 SELHLTRLKGTEGGTYTFLVSNSDVNAAIAFNVYVNTKPEILTY------------------------------------ 418 (524)
T ss_dssp EEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEECEEEEEEEE------------------------------------
T ss_pred EEEEEeecCcccCeEEEEEEEecCceEEEEEEEEEecCCeEeec------------------------------------
Confidence 68999999999999999999999999888888888765532110
Q ss_pred cccccEEEEcCCeEEEEEEEeeecCCceEEEECCeecC--------CCCc---eEEEEcCCeE-EEEEcCceecCCceEE
Q psy7039 360 LSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVS--------PDGR---IKFETSENQT-IYRNKSAKRATDSGSY 427 (516)
Q Consensus 360 ~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~--------~~~~---~~~~~~~~~~-~l~i~~~~~~~~~g~y 427 (516)
.....| .|.|.+.|.|.|.+.|++++..+. .+.. +.....+... ...+..... .|.|.|
T Consensus 419 -----~~~~~g---~l~C~~~g~P~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~l~~~~~-~d~G~Y 489 (524)
T 2ec8_A 419 -----DRLVNG---MLQCVAAGFPEPTIDWYFCPGTEQRCSASVLPVDVQTLNSSGPPFGKLVVQSSIDSSAF-KHNGTV 489 (524)
T ss_dssp -----ECCSSS---CEEEEEEEESCCEEECCCC----------CCCCCCCCCCC-CCSSSCEEEEEEECCCSC-CC----
T ss_pred -----ccCcCc---EEEEEEEeecCCEEEEEECCCcccccccccCCCCceeeeeccCCCCcceEEEEEEEEEc-cCCEEE
Confidence 012234 899999999999999999976541 1111 1111111111 112444446 899999
Q ss_pred EEEEEcCCCceeEEEEEEEecCCCC
Q psy7039 428 TIQLVNTVGSDSASCKVYVVDKPSP 452 (516)
Q Consensus 428 ~c~a~n~~G~~s~s~~l~v~~~p~~ 452 (516)
+|.|.|..|.....+.|.|..++..
T Consensus 490 ~C~a~N~~G~~~~~~~l~V~e~~~~ 514 (524)
T 2ec8_A 490 ECKAYNDVGKTSAYFNFAFKGNNKE 514 (524)
T ss_dssp -CEEECSSCEEECCCCCCC------
T ss_pred EEEEEcCCCceEEEEEEEEecCCHH
Confidence 9999999999999999999876654
|
| >3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.6e-26 Score=252.00 Aligned_cols=350 Identities=15% Similarity=0.166 Sum_probs=243.5
Q ss_pred eeCCeeEEEecCCCCCCCCceeceEEEEEeCCCCeEEe------EEeecCCcEEEeCCCcCCCe-EEEEEEEecCCCC-C
Q psy7039 25 WDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKA------VVVPAGETSCTVPGLIEGET-YQFQVRAVNAAGP-G 96 (516)
Q Consensus 25 ~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~~~~~~------~~~~~~~~~~~i~~l~~~~~-y~~~~~a~n~~g~-~ 96 (516)
.....+.|.|..|.... .....+.|...+...... ......+.+|.|.++++.|. |.|+|.|.|..+. .
T Consensus 151 ~~G~~v~L~C~~~~~~~---~~~~~v~W~~~~~~~~~~~~~~~~r~~~~~~g~L~I~~v~~~D~~g~Y~C~~~~~~~~~~ 227 (816)
T 3dmk_A 151 IRGNSAVIKCLIPSFVA---DFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGET 227 (816)
T ss_dssp ETTSCEEECCBCCHHHH---TTEEEEEEEETTSCEECBSSCBTTTEEECTTSCEEESSCCGGGSSCEEEEEEEETTTCCE
T ss_pred ecCceEEEEECCCcccc---ccEEEEEEEecCceEeccccCCCceEEEecCceEEEecCChhhccceeEEEEeeeeeeee
Confidence 46788999998752111 011345555543321100 01112456899999999998 9999999875432 2
Q ss_pred CCCCCCcceEe--ccCCCCCccccC-cccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeE
Q psy7039 97 EASKPTAPIVA--KPKNLAPRIDRS-TLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHG 173 (516)
Q Consensus 97 ~~s~~~~~~~~--~~~~~~p~~~~~-~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~ 173 (516)
..+.....+.+ .....+|.+... ......+..|+.+.|.|.+. |.|.+.+.
T Consensus 228 ~~s~~~~~l~v~~~~~~~~P~i~~~~~~~~~~v~~g~~v~L~C~~~--------------------------g~p~p~v~ 281 (816)
T 3dmk_A 228 RLSATKGRLVITEPISSAVPKVVSLAKFDMKTYSGSSTMALLCPAQ--------------------------GYPVPVFR 281 (816)
T ss_dssp EECSBCEEEEEECCCSCCCCBCCGGGGEEEEEECTTSCEEECCCCB--------------------------CSSCCEEE
T ss_pred eecccccceEEeCCCCCCCCccccccCccceEEeCCCeEEEEEEee--------------------------ecCCCeEE
Confidence 11222222222 222345665422 22457889999999999999 99999999
Q ss_pred EeeCCeeec------cCCceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEEeeceee-------eeccccC
Q psy7039 174 WSINGQVCQ------IGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVTGTEF-------TDNNVHE 240 (516)
Q Consensus 174 W~~~~~~~~------~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~~~~~~-------~~~~l~~ 240 (516)
|++++.... ...+... ...+|.|.+++.+|+|.|+|.+.|..|.......+.+... ....+.+
T Consensus 282 W~k~~~~~~~~~~~~~~~~~~~----~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~~v~~ 357 (816)
T 3dmk_A 282 WYKFIEGTTRKQAVVLNDRVKQ----VSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDF 357 (816)
T ss_dssp EEEECTTSSCEEECCCSSSEEE----ETTEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEECEEEEEEEESSEEECCT
T ss_pred EEeCCCCCccCcceecCCceEe----ccceEEECCCCHhHCEEEEEEEEcCCCceEEEEEEEEcCCCceeeCCCceEecC
Confidence 998533221 1222221 2358999999999999999999999887765554333211 2345778
Q ss_pred CceEEEEEEEEccCCCCCceecccccccceEEEEEecceeeEEEccCCCCCceEEEEEEEecCCCcceeEEEEEecCCCC
Q psy7039 241 GKAYEYRVSAVNAAGTEKPKISLDALIGKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGP 320 (516)
Q Consensus 241 g~~~~~~~~~~~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~ 320 (516)
|..+.+.|.+ .|.|.+.+.|.+... . .......|.|.++..+|+|.|+|.|.|..|....+..+.|.....+
T Consensus 358 G~~v~l~C~~---~g~p~~~v~W~k~g~-~----~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~ 429 (816)
T 3dmk_A 358 GRPAVFTCQY---TGNPIKTVSWMKDGK-A----IGHSESVLRIESVKKEDKGMYQCFVRNDRESAEASAELKLGGRFDP 429 (816)
T ss_dssp TSCEEEEEEE---EEECCCEEEEEETTE-E----CSCCSSEEEESSCCGGGCEEEEEEEECSSCEEEECCEEECCCSSCC
T ss_pred CCCEEEEEEE---eccCCCEEEEEECCE-E----CCCCCCEEEEcCCCHHHCEEEEEEEECCCCcEEEEEEEEEccccCC
Confidence 9999999998 678999999965221 1 1234568999999999999999999999988777777776543333
Q ss_pred CCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCC
Q psy7039 321 PTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDG 400 (516)
Q Consensus 321 p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~ 400 (516)
|.. . .......+..|+.+.|.|.+.|.|.+.+.|++++..+....
T Consensus 430 p~i--~---------------------------------~~~~~~~v~~G~~v~L~C~~~g~p~p~v~W~~~g~~l~~~~ 474 (816)
T 3dmk_A 430 PVI--R---------------------------------QAFQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIANND 474 (816)
T ss_dssp CEE--E---------------------------------EECCCEEECSSSCEEEEEEEECSSCCEEEEEETTEECCSCT
T ss_pred Cce--E---------------------------------ecCcceEEcCCCCEEEEEEEecCCCCEEEEEECCEECCCCC
Confidence 210 0 11234567899999999999999999999999999887666
Q ss_pred ceEEEE----cC-CeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEEEEecCCC
Q psy7039 401 RIKFET----SE-NQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPS 451 (516)
Q Consensus 401 ~~~~~~----~~-~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~v~~~p~ 451 (516)
++.... .+ ....|.|.++.. .|.|.|+|.|.|..|....+..|.|..+|.
T Consensus 475 ~~~~~~~~~~~~~~~~~L~i~~v~~-~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~ 529 (816)
T 3dmk_A 475 RYQVGQYVTVNGDVVSYLNITSVHA-NDGGLYKCIAKSKVGVAEHSAKLNVYGLPY 529 (816)
T ss_dssp TEEEEEEECTTSCEEEEEEESSCCT-TTCEEEEEEEEETTEEEEEEEEEEECSSCE
T ss_pred CcccccEEecCCCcEEEEEEeeccc-cCCEEEEEEEEECCCeEEEEEEEEEecCCe
Confidence 665422 11 234699999999 999999999999999999999999987663
|
| >2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=4.4e-26 Score=237.38 Aligned_cols=309 Identities=11% Similarity=0.073 Sum_probs=205.2
Q ss_pred CCcEEEeCCCcCCCeEEEEEEEecCCCCCCCCCCCcceEec-cCCCCCccccCcccceEEecCCeEEEEEeeeecccccc
Q psy7039 68 GETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAK-PKNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTK 146 (516)
Q Consensus 68 ~~~~~~i~~l~~~~~y~~~~~a~n~~g~~~~s~~~~~~~~~-~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~ 146 (516)
...+|.|.+++..|.|.|+|.|.|..|..........+.+. ....+|.+. ..+....+.+|+.+.|.|.+.
T Consensus 68 ~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~~~~l~V~~~~~~~P~~~-~~~~~~~~~~g~~v~l~C~~~------- 139 (523)
T 2rcj_C 68 TSASLAISGLEAEDESDYYCASWNSSDNSYVFGTGTKVTVLGQPKANPTVT-LFPPSSEELQANKATLVCLIS------- 139 (523)
T ss_pred CEEEEEECCCChhhCEEEEEEEccCCCccccccCceEEEeccCCCcCCeEE-ecCCcccccCCCceEEEEEec-------
Confidence 45689999999999999999999976632111112223332 223456655 333445567899999999999
Q ss_pred CccccccccccCccceeecCcCc--eeeEEeeCCeeeccCCceEEe---ecCC---eeEEEeccCCCCCCeeEEEEEEcC
Q psy7039 147 SPLRALGVRANSTKGWVKLSEPF--LNHGWSINGQVCQIGGRADVQ---TTKS---ETVLDIPFCSRSDTGHYSLTLENN 218 (516)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~p~--~~i~W~~~~~~~~~~~~~~~~---~~~~---~~~l~i~~~~~~d~g~Y~c~~~~~ 218 (516)
+.++ +.++|++++..+....+.... ..+. .+.|.|.++..+|+|.|+|.+.|.
T Consensus 140 -------------------g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~ 200 (523)
T 2rcj_C 140 -------------------DFYPGAVTVAWKADGSPVKAGVETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHE 200 (523)
T ss_pred -------------------cccCCceEEEEecCCCCCCCceEeccccccCCCCEEEEEEEEEechhcCCCceEEEEEEec
Confidence 7654 499999999887654332211 1111 247999999999999999999998
Q ss_pred CCceEEEEEeec-------eee----eeccccCCceEEEEEEEEccCCC-CCc-eecccccccceE-----EEEEec---
Q psy7039 219 LGTATASAHVTG-------TEF----TDNNVHEGKAYEYRVSAVNAAGT-EKP-KISLDALIGKRI-----KEFVTS--- 277 (516)
Q Consensus 219 ~g~~~~~~~~~~-------~~~----~~~~l~~g~~~~~~~~~~~~~g~-p~p-~i~W~~~~~~~~-----~~~~~~--- 277 (516)
.+.......... ..+ ....+.+|..+.+.|.+ .|. |.| .+.|.+...... .+....
T Consensus 201 ~~~~~~~~~~~~~~~~~~~P~v~~~~~~~~~~~G~~~~l~C~~---~g~~P~p~~v~W~k~g~~~~~~~~~~~~~~~g~~ 277 (523)
T 2rcj_C 201 GSTVEKTVAPTECSASTKGPSVFPLAPSSKSTSGGTAALGCLV---KDYFPQPVTVSWNSGALTSGVHTFPAVLQSSGLY 277 (523)
T ss_pred CcccccceeeeecCCCCcCCEEEecCCCcccccCCceEEEEEE---eceeCCCeEEEEecCCcccceEeCCcEecCCCcE
Confidence 876654443210 011 11235689999999998 665 767 899976322100 011011
Q ss_pred -ceeeEEEccCCCCCceEEEEEEEecCCCcceeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeecccc
Q psy7039 278 -TTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKI 356 (516)
Q Consensus 278 -~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~ 356 (516)
....|.|.++...| |.|+|.|.|..|.......+.+...|.. .+ .
T Consensus 278 ~~~s~L~i~~~~~~d-G~Y~C~a~n~~g~~~~~~~l~v~~~P~~-----~~------------~---------------- 323 (523)
T 2rcj_C 278 SLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKRVEPLSLPSV-----FL------------F---------------- 323 (523)
T ss_pred EEEEEEEechhhcCC-ceEEEEEEeCCCCcceEEecCCCcCceE-----Ee------------c----------------
Confidence 13489999999999 9999999999998766666655433211 00 0
Q ss_pred ccccccccE-EEEcCCeEEEEEEEeeecC----CceEEEECCeecCCCCceEEEE-cCC----eEEEEEcCceecCCceE
Q psy7039 357 TSDLSIRDM-TVLAGEEFTITVPFSGRPK----PTPIWTVNGDEVSPDGRIKFET-SEN----QTIYRNKSAKRATDSGS 426 (516)
Q Consensus 357 ~~~~~~~~~-~v~~g~~~~l~C~~~g~p~----~~i~W~~~~~~l~~~~~~~~~~-~~~----~~~l~i~~~~~~~~~g~ 426 (516)
.+... .+..|+.+.|.|.+.|.++ +.|.|++++..+.......... ..+ .+.|.|..+.. +|.|.
T Consensus 324 ----~p~~~~~v~~g~~~~l~C~~~g~~p~~~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~L~i~~~~~-~d~G~ 398 (523)
T 2rcj_C 324 ----PPKPKDTLMISRTPEVTCVVVDVSHEDPQVKFNWYVDGVQVHNAKTKPREQQYNSTYRVVSVLTVLHQNW-LDGKE 398 (523)
T ss_pred ----CCCchhhcccCCceEEEEEEecccCCCCceEEEEEECCeEccCCccCCceecCCCcEEEEEEEEECHHHh-cCCCe
Confidence 01111 2678999999999998653 4899999998875443221111 111 24588999999 99999
Q ss_pred EEEEEEcCCCceeEEEEEE
Q psy7039 427 YTIQLVNTVGSDSASCKVY 445 (516)
Q Consensus 427 y~c~a~n~~G~~s~s~~l~ 445 (516)
|+|.|.|..|.......+.
T Consensus 399 Y~C~a~n~~~~~~~~~~~~ 417 (523)
T 2rcj_C 399 YKCKVSNKALPAPIEKTIS 417 (523)
T ss_pred EEEEEeCCCCCCceeEEEE
Confidence 9999999988765555454
|
| >2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.7e-26 Score=221.39 Aligned_cols=264 Identities=22% Similarity=0.305 Sum_probs=200.7
Q ss_pred CCccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEee-CCeeeccCCceEEee
Q psy7039 113 APRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSI-NGQVCQIGGRADVQT 191 (516)
Q Consensus 113 ~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~-~~~~~~~~~~~~~~~ 191 (516)
+|.+. ..+..+.+.+|+.+.|.|.+. +.|. .+.|++ ++..+....++.+..
T Consensus 4 ~p~v~-~~~~~~~v~~G~~v~l~C~~~--------------------------~~p~-~v~W~~~~g~~~~~~~~~~~~~ 55 (291)
T 2wim_A 4 LLQVT-ISLSKVELSVGESKFFTCTAI--------------------------GEPE-SIDWYNPQGEKIISTQRVVVQK 55 (291)
T ss_dssp CCEEE-ESCSEEEEETTCCEEEEEEEE--------------------------SCCS-EEECBCTTCCBCCCBTTEEEEE
T ss_pred CceEE-EeccceEecCCCcEEEEEEEe--------------------------CCCC-ceEEECCCCcCccCCCcEEEec
Confidence 56665 566778999999999999999 8775 899999 777777777888877
Q ss_pred cCCeeEEEeccCCCCCCeeEEEEEEcCCCceE-EEEEeece---ee----eeccccCCceEEEEEEEEccCCCCCceecc
Q psy7039 192 TKSETVLDIPFCSRSDTGHYSLTLENNLGTAT-ASAHVTGT---EF----TDNNVHEGKAYEYRVSAVNAAGTEKPKISL 263 (516)
Q Consensus 192 ~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~-~~~~~~~~---~~----~~~~l~~g~~~~~~~~~~~~~g~p~p~i~W 263 (516)
.+....|.|.+++.+|+|.|+|.+.|..|... ....+.+. .+ ....+.+|+.+.+.|.+ .|.|.+.+.|
T Consensus 56 ~~~~~~L~i~~~~~~D~G~Y~C~~~n~~g~~~~~~~~l~v~~~~~~~~~~~~~~v~~G~~v~l~C~~---~~~p~~~v~W 132 (291)
T 2wim_A 56 EGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFREVVSPQEFKQGEDAEVVCRV---SSSPAPAVSW 132 (291)
T ss_dssp ETTEEEEEECSCCGGGCEEEEEEEECSSSCEEEEEEEEEEECCCBCCSCCCSEEEETTSCEEECCCC---BCSSCCEEEE
T ss_pred CCCEEEEEEccCCcccCEEEEEEEecccCceEEEEEEEEecCCcceEeCCCChhhcCCCCEEEEEEE---ccCCCCEEEE
Confidence 77788999999999999999999999888753 22222221 11 22346789999999987 7889999999
Q ss_pred cccc-------cceEEEEEecceeeEEEccCCCCCceEEEEEEEecCCCcc--eeEEEEEecCCCCCCCCceeeeccCCe
Q psy7039 264 DALI-------GKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDM--ADIEVVVVSKPGPPTGPIDYTTVTPES 334 (516)
Q Consensus 264 ~~~~-------~~~~~~~~~~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~--~~~~l~v~~~p~~p~~p~~~~~~~~~~ 334 (516)
.+.. ..+.. ......|.|.++...|.|.|+|.+.|..+... ..+.+.+..+|.....
T Consensus 133 ~~~~~~~~~~~~~~~~---~~~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~~~~~~~~~v~~~p~~~~~----------- 198 (291)
T 2wim_A 133 LYHNEEVTTISDNRFA---MLANNNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMP----------- 198 (291)
T ss_dssp ECC----CBCCCSSEE---ECTTSCEEETTCCGGGCEEEEEEEEETTTTEEEEEEEEEEEEBCCCCBCS-----------
T ss_pred EECCccccccCCceEE---EccCCCEEEEecchhhCEEEEEEEEECCCCeeEEeeEEEEeccCCccccC-----------
Confidence 6522 11111 23456799999999999999999999875533 3455566555443211
Q ss_pred eEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEEEEcCCeEEEE
Q psy7039 335 VSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYR 414 (516)
Q Consensus 335 ~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~ 414 (516)
.......+..|+.+.|.|.+.|.|.+.+.|++++..+..+.++.+. .....|.
T Consensus 199 -------------------------~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~--~~~~~L~ 251 (291)
T 2wim_A 199 -------------------------QKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILK--GSNTELT 251 (291)
T ss_dssp -------------------------CSEEECCSSSCCEEEEECBCCCBSCCEEEEEETTEECCCTTTEEEC--STTCEEE
T ss_pred -------------------------cccccceecCCCeEEEEEEeecCCCCeEEEEECCEECcCCccEEEc--CCccEEE
Confidence 0111234568999999999999999999999999988777766543 3345799
Q ss_pred EcCceecCCceEEEEEEEcCCCceeEEEEEEEecC
Q psy7039 415 NKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDK 449 (516)
Q Consensus 415 i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~v~~~ 449 (516)
|.++.. .|.|.|+|.|.|..|....++.|.|..+
T Consensus 252 i~~~~~-~d~G~Y~C~a~N~~G~~~~~~~l~v~~~ 285 (291)
T 2wim_A 252 VRNIIN-SDGGPYVCRATNKAGEDEKQAFLQVFVQ 285 (291)
T ss_dssp EESCCS-TTCEEEEEEEEETTEEEEEEEEEEC---
T ss_pred EeeCCc-ccCEEEEEEEEECCCceeeeEEEEEEEe
Confidence 999999 9999999999999999999999998764
|
| >1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.95 E-value=4e-26 Score=233.07 Aligned_cols=327 Identities=15% Similarity=0.110 Sum_probs=213.3
Q ss_pred eCCeeEEEecCCCCCCCCceeceEEEEEeCCCCeEEeEEe-ecCCcEEEeCCCcCCCeEEEEEEEecCCCCCCCC-----
Q psy7039 26 DKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVVV-PAGETSCTVPGLIEGETYQFQVRAVNAAGPGEAS----- 99 (516)
Q Consensus 26 ~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~~~~~~~~~-~~~~~~~~i~~l~~~~~y~~~~~a~n~~g~~~~s----- 99 (516)
....+.|.+... +..+...+.|.|...+......... ......|.|.+++..|.|.|+|+|.|..|.....
T Consensus 100 ~G~~v~L~C~~~---g~~~~~~~~v~W~k~g~~l~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~~~ 176 (450)
T 1z7z_I 100 VGKNLTLRCQVE---GGAPRANLTVVLLRGEKELKREPAVGEPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENT 176 (450)
T ss_dssp TTSEEEEEEEEE---CCBCGGGEEEEEEETTEEEEEEECCTTTEEEEEEEECCSSCSSCEEEEEEEEECGGGTSCEEEEE
T ss_pred eCCeEEEEEEec---CCCCCcCcEEEEeeCCEEeecccccccccceEEEEEeeccccCceEEEEEEcccCCCCceEEeec
Confidence 456788888763 2222334466666654411111111 1123589999999999999999999987643210
Q ss_pred CCCcceEecc-CCCCCccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCc-C--ceeeEEe
Q psy7039 100 KPTAPIVAKP-KNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSE-P--FLNHGWS 175 (516)
Q Consensus 100 ~~~~~~~~~~-~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p--~~~i~W~ 175 (516)
.....+.+.. +..+|.+. ....+.+|+.+.|.|.+. +. | .+.+.|+
T Consensus 177 s~~~~l~v~~~~~~~p~~~----~~~~v~~G~~v~l~C~~~--------------------------g~~P~~~~~~~W~ 226 (450)
T 1z7z_I 177 SAPYQLQTFVLPATPPQLV----SPRVLEVDTQGTVVCSLD--------------------------GLFPVSEAQVHLA 226 (450)
T ss_dssp CCCEECEECCCCSSCCEEE----CCSEEETTSEEEEEEEEE--------------------------SCTTGGGCEEEEE
T ss_pred cCccceeeeccCCCCCEec----CceeEEeCCcEEEEEEee--------------------------CCCCCCceEEEEe
Confidence 0111111111 12344332 126789999999999999 77 7 7899999
Q ss_pred eCCeeeccCCceEEeecCCeeEEEeccCCCCCCe--eEEEEEEcCCCceEEEEEeecee-------eeeccccCCceEEE
Q psy7039 176 INGQVCQIGGRADVQTTKSETVLDIPFCSRSDTG--HYSLTLENNLGTATASAHVTGTE-------FTDNNVHEGKAYEY 246 (516)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g--~Y~c~~~~~~g~~~~~~~~~~~~-------~~~~~l~~g~~~~~ 246 (516)
+++..+.. +.....+.....+.+ +++.+|+| .|+|.+.|..|.......+.+.. .....+.+|+.+.|
T Consensus 227 ~~~~~~~~--~~~~~~~~~~~~~~~-~v~~~d~G~~~Y~C~a~n~~g~~~~~~~l~V~~~~~p~i~~~~~~v~~G~~v~l 303 (450)
T 1z7z_I 227 LGDQRLNP--TVTYGNDSFSAKASV-SVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNVILTKPEVSEGTEVTV 303 (450)
T ss_dssp ETTEECCC--EEEEETTEEEEEEEE-ECCGGGCEEEEEEEEEEETTEEEEEEEEEEEECCCCCEEEESCSEEETTCEEEE
T ss_pred CCCEeCCc--eEEecCCceeEEEEE-EeEhhhCCcEEEEEEEccCCccEEEEEEEEEecCCCCeEecCCeeEeCCCcEEE
Confidence 99988764 333221211112233 78999999 99999999988776555433322 12345778999999
Q ss_pred EEEEEccCCCCCceecccccccceEEEEEecceeeEEEccCCCCCceEEEEEEEecCC-Cc---ceeEEEEEecCCCCCC
Q psy7039 247 RVSAVNAAGTEKPKISLDALIGKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYG-ID---MADIEVVVVSKPGPPT 322 (516)
Q Consensus 247 ~~~~~~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~l~i~~l~~~d~g~y~c~a~n~~g-~~---~~~~~l~v~~~p~~p~ 322 (516)
.|.+ . |.|.+.|+ +... ...+....|.|.++..+|.|.|+|.|.|..+ .. ...+.|.|..+|....
T Consensus 304 ~C~~---~--p~p~i~W~---g~~~--~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~g~~~~~~~~~~l~V~~~P~~~~ 373 (450)
T 1z7z_I 304 KCEA---H--PRAKVTLN---GVPA--QPLGPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDE 373 (450)
T ss_dssp EEEC--------------------------CCCCCEEEECCGGGTTCEEEEEEEEEETTEEEEEEEEEECEEEEEEECCS
T ss_pred EEec---C--CCCEeEEC---CEEc--CCCCceEEEEEecCcccCCceEEEEEEcCCCCcccccceeEEEEEecCCceee
Confidence 9998 3 88999993 2222 1234556899999999999999999997655 32 3567777776665432
Q ss_pred CCceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCce
Q psy7039 323 GPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRI 402 (516)
Q Consensus 323 ~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~ 402 (516)
. ..+....+.+|+.+.|.|.+.|.|.|.+.|++++..+...+.
T Consensus 374 ~------------------------------------~~p~~~~~~~g~~~~l~C~~~g~P~p~i~W~~~g~~~~~~g~- 416 (450)
T 1z7z_I 374 R------------------------------------DCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIGE- 416 (450)
T ss_dssp T------------------------------------TSCSEEEEETTCEECCCCCCEEESCCEEEEEETTTEECCTTS-
T ss_pred c------------------------------------cCCCceeEcCCCeEEEEEecccCCCCcEEEEECCcccCCCCC-
Confidence 2 123456889999999999999999999999999973322211
Q ss_pred EEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEEEEec
Q psy7039 403 KFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVD 448 (516)
Q Consensus 403 ~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~v~~ 448 (516)
.+ .+.. .|+|.|+|.|.|..|..+.++.|.|..
T Consensus 417 ---------~~---~v~~-~d~G~Y~C~a~N~~G~~~~~~~l~V~~ 449 (450)
T 1z7z_I 417 ---------SV---TVTR-DLEGTYLCRARSTQGEVTREVTVNVLS 449 (450)
T ss_dssp ---------CE---ECCG-GGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred ---------eE---eEeh-hhCeEEEEEEEeCCCceeEEEEEEEEc
Confidence 12 4677 999999999999999999999998874
|
| >2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.1e-26 Score=224.50 Aligned_cols=266 Identities=20% Similarity=0.272 Sum_probs=186.5
Q ss_pred CCCccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEee
Q psy7039 112 LAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQT 191 (516)
Q Consensus 112 ~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~ 191 (516)
.+|.|. ..+..+.+.+|+.+.|.|.+. |.|.+.+.|++++..+.. .++.+..
T Consensus 5 ~~P~~~-~~p~~~~v~~G~~v~l~C~~~--------------------------g~p~~~i~W~k~g~~i~~-~~~~~~~ 56 (304)
T 2yd9_A 5 EPPRFI-KEPKDQIGVSGGVASFVCQAT--------------------------GDPKPRVTWNKKGKKVNS-QRFETIE 56 (304)
T ss_dssp CCCEEE-ECCCCEEEETTSCEEEEEEEE--------------------------CSSCCEEEEC-------C-TTEEEEE
T ss_pred cCCeee-ecCCceEecCCCeEEEEEEEE--------------------------EeCCCeEEEEECCEECCC-CceEEEE
Confidence 577777 667788999999999999999 999999999999988754 3444332
Q ss_pred --cCCeeEEEeccCCC-CCCeeEEEEEEcCCCceEEEEEeece----------ee----eeccccCCceEEEEEEEEccC
Q psy7039 192 --TKSETVLDIPFCSR-SDTGHYSLTLENNLGTATASAHVTGT----------EF----TDNNVHEGKAYEYRVSAVNAA 254 (516)
Q Consensus 192 --~~~~~~l~i~~~~~-~d~g~Y~c~~~~~~g~~~~~~~~~~~----------~~----~~~~l~~g~~~~~~~~~~~~~ 254 (516)
.+....|.|.+++. +|+|.|+|.+.|..|.......+.+. .+ ....+..|+.+.+.|.+ .
T Consensus 57 ~~~~~~~~L~i~~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~p~~~p~i~~~~~~~~v~~g~~v~l~C~~---~ 133 (304)
T 2yd9_A 57 FDESAGAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTATMLCAA---S 133 (304)
T ss_dssp ETTTTEEEEEECSCCTTTTCSEEEEEEECSSCEECCEEEEEEECGGGCCTTCCEEEECCCCEEEETTSCEEECCEE---E
T ss_pred ecCCCceEEEEecccccCCCeEEEEEEECCCCeEEEEEEEEEeccccCCCCCCeeecCCccEEEeCCCeEEEEEEC---c
Confidence 33458999999998 99999999999988875544433321 11 12346679999999998 7
Q ss_pred CCCCceeccccccc------ceEEEEEecceeeEEEccCCCCCceEEEEEEEecCCCccee-EEEEEecCCCCCCCCcee
Q psy7039 255 GTEKPKISLDALIG------KRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMAD-IEVVVVSKPGPPTGPIDY 327 (516)
Q Consensus 255 g~p~p~i~W~~~~~------~~~~~~~~~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~~-~~l~v~~~p~~p~~p~~~ 327 (516)
|.|.|.+.|.+... ....+. ....+.|.|.++...|+|.|+|.|.|..|..... ..+.|.....+|. +.
T Consensus 134 g~p~~~v~W~k~~~~~~~~~~~~~~~-~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~v~~~~~~P~--~~- 209 (304)
T 2yd9_A 134 GNPDPEITWFKDFLPVDPSASNGRIK-QLRSGALQIESSEETDQGKYECVATNSAGVRYSSPANLYVRVQNVAPR--FS- 209 (304)
T ss_dssp CSSCCEEEEEETTEECCGGGGTTSEE-ECTTSCEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEECCCEEEE--EE-
T ss_pred cCCCCeEEEEECCEECcCCCCcceEE-eCCCeEEEEccCCcccCEEEEEEEEeCCCCEEeccEEEEEEeeccCCc--EE-
Confidence 88999999965211 100111 2345689999999999999999999998875433 4555543222110 00
Q ss_pred eeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEEEEc
Q psy7039 328 TTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETS 407 (516)
Q Consensus 328 ~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~ 407 (516)
..+....+..|+.+.|.|.+.|.|.+.+.|++++..+.....+.
T Consensus 210 --------------------------------~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~---- 253 (304)
T 2yd9_A 210 --------------------------------ILPMSHEIMPGGNVNITCVAVGSPMPYVKWMQGAEDLTPEDDMP---- 253 (304)
T ss_dssp --------------------------------ECCCCBCCCTTCCEEEEEEEEEESCCEEEEEETTEECSCSSSCC----
T ss_pred --------------------------------ecCCceEEcCCCeEEEEEEEeeeCCCEEEEEECCEECCCccccc----
Confidence 01123456789999999999999999999999998886554322
Q ss_pred CCeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEEEEecCCC
Q psy7039 408 ENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPS 451 (516)
Q Consensus 408 ~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~v~~~p~ 451 (516)
.+...|.|.++ .|+|.|+|.|.|..|....++.|.|...+.
T Consensus 254 ~~~~~L~i~~~---~d~G~Y~C~a~N~~G~~~~~~~l~V~~~~~ 294 (304)
T 2yd9_A 254 VGRNVLELTDV---KDSANYTCVAMSSLGVIEAVAQITVKSLPK 294 (304)
T ss_dssp BSEEEEEECSC---CSCEEEEEEEEETTEEEEEEEEEC------
T ss_pred CCcEEEEEccc---ccCEEEEEEEEeCCCcEEEEEEEEEecCcc
Confidence 23456777665 689999999999999999999999986554
|
| >2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=4.1e-26 Score=220.31 Aligned_cols=261 Identities=23% Similarity=0.336 Sum_probs=206.5
Q ss_pred CCCccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccC-CceEEe
Q psy7039 112 LAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIG-GRADVQ 190 (516)
Q Consensus 112 ~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~-~~~~~~ 190 (516)
.+|.|. ..+..+.+.+|+.+.|.|.+. +.|.+.+.|++++..+... .++.+.
T Consensus 3 ~~P~~~-~~p~~~~v~~G~~v~l~C~~~--------------------------g~p~~~v~W~~~~~~~~~~~~~~~~~ 55 (305)
T 2nzi_A 3 MAPHFK-EELRNLNVRYQSNATLVCKVT--------------------------GHPKPIVKWYRQGKEIIADGLKYRIQ 55 (305)
T ss_dssp CCCEEE-ECCCCEEECTTCCEEEEEEEE--------------------------CSSCCEEEEEETTEECCCCSSSEEEE
T ss_pred CCCeee-ecccceEEeCCCcEEEEEEEe--------------------------CCCCCeEEEEECCEEcccCCCeEEEE
Confidence 467776 566789999999999999999 9999999999999888654 455544
Q ss_pred e-cCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEEeeceee------------eeccccCCceEEEEEEEEccCCCC
Q psy7039 191 T-TKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVTGTEF------------TDNNVHEGKAYEYRVSAVNAAGTE 257 (516)
Q Consensus 191 ~-~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~~~~~~------------~~~~l~~g~~~~~~~~~~~~~g~p 257 (516)
. .+....|.|.+++.+|+|.|+|.+.|..|.......+.+... ....+..|..+.+.|.+ .|.|
T Consensus 56 ~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~g~~~~l~C~~---~g~p 132 (305)
T 2nzi_A 56 EFKGGYHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPF---SGKP 132 (305)
T ss_dssp EETTTEEEEEESSCCGGGCSEEEEEEEETTEEEEEEEEEEECEEEEECCCHHHHSSCCEEEETTCCEEEEEEE---EEES
T ss_pred ECCCCEEEEEEccCChhhCeEEEEEEEcCCCCccceEEEEEecCCccCCCccccccccEEecCCCEEEEEEEE---CCCC
Confidence 3 456679999999999999999999999887665554433221 12235679999999998 7889
Q ss_pred Cceeccccc-----ccceEEEEEecceeeEEEcc-CCCCCceEEEEEEEecCCCcceeEEEEEecCCCCCCCCceeeecc
Q psy7039 258 KPKISLDAL-----IGKRIKEFVTSTTASLNIKN-SVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVT 331 (516)
Q Consensus 258 ~p~i~W~~~-----~~~~~~~~~~~~~~~l~i~~-l~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~p~~p~~~~~~~ 331 (516)
.|.+.|.+. ...++.+........|.|.+ +...|.|.|+|.|.|..|.....+.+.|...|.+|.. +.+..+.
T Consensus 133 ~p~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~P~~p~~-~~~~~~~ 211 (305)
T 2nzi_A 133 DPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVADVPDPPRG-VKVSDVS 211 (305)
T ss_dssp CCEEEEEESSSBCCSSSSCEEEECSSEEEEEETTCCCSTTCEEEEEEEEETTEEEEEEEEEEEEBCCCCCEE-EEEESCC
T ss_pred CCEEEEEECCEECCCCCcEEEEEcCCceEEEEecCCccCccEEEEEEEEeCCCceeeEEEEEEecCCCCCCC-ceeeecc
Confidence 999999652 23344555556678999999 9999999999999999999988999999988877655 6777789
Q ss_pred CCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEEEEcCCeE
Q psy7039 332 PESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQT 411 (516)
Q Consensus 332 ~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~ 411 (516)
..++.|+|.+|..+++.+|.. |.+...+.+...|.+.+... ..
T Consensus 212 ~~~v~l~w~~p~~~g~~~i~~------------------------y~v~~~~~~~~~w~~~~~~~-------------~~ 254 (305)
T 2nzi_A 212 RDSVNLTWTEPASDGGSKITN------------------------YIVEKCATTAERWLRVGQAR-------------ET 254 (305)
T ss_dssp SSCEEEEEECCSCCSBSCEEE------------------------EEEEEEETTSCCEEEEEEES-------------SS
T ss_pred CCEEEEEEcCCccCCCCceeE------------------------EEEEEecCCCCccEECcccc-------------Cc
Confidence 999999999987776665544 45666666777887655322 24
Q ss_pred EEEEcCceecCCceEEEEEEEcCCCceeEE
Q psy7039 412 IYRNKSAKRATDSGSYTIQLVNTVGSDSAS 441 (516)
Q Consensus 412 ~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s 441 (516)
.|.|.++.+ .+.|.|+|.|.|..|.+..+
T Consensus 255 ~~~i~~l~~-~~~y~~~~~A~N~~G~~~~S 283 (305)
T 2nzi_A 255 RYTVINLFG-KTSYQFRVIAENKFGLSKPS 283 (305)
T ss_dssp EEEECSCCS-SCEEEEEEEEEETTEECCCC
T ss_pred eEEecCCCC-CCeEEEEEEEEeCCcccCCc
Confidence 689999999 99999999999999986544
|
| >2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J | Back alignment and structure |
|---|
Probab=99.95 E-value=6.2e-25 Score=231.91 Aligned_cols=299 Identities=14% Similarity=0.093 Sum_probs=207.1
Q ss_pred EEEeCCCcCCCeEEEEEEEecCCCCCCCCCCCcceEeccCCCCCccccCcccceEEecCCeEEEEEeeeeccccccCccc
Q psy7039 71 SCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLR 150 (516)
Q Consensus 71 ~~~i~~l~~~~~y~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~ 150 (516)
+|.|.+++..|.|.|+|.|.|..|... ....+.+.. .+ +..+.+.+|+.+.|.|.+.
T Consensus 186 ~L~I~~v~~~D~G~Y~C~a~n~~g~~~---~~~~l~V~~--~~-------p~~~~~~~G~~v~l~C~~~----------- 242 (585)
T 2ocw_A 186 SVVINQLRLSDAGQYLCQAGDDSNSNK---KNADLQVLK--PE-------PELVYEDLRGSVTFHCALG----------- 242 (585)
T ss_pred EEEEccCChhHCeEEEEEeccCCcccc---ceEEEEEcc--CC-------CceeEEcCCCcEEEEEEcC-----------
Confidence 799999999999999999998776532 222233321 12 2345678999999999965
Q ss_pred cccccccCccceeecCc-Cc-eeeEEe-eCCee---ec---------cCCceEEeec--CCeeEEEeccCCCCCCeeEEE
Q psy7039 151 ALGVRANSTKGWVKLSE-PF-LNHGWS-INGQV---CQ---------IGGRADVQTT--KSETVLDIPFCSRSDTGHYSL 213 (516)
Q Consensus 151 ~~~~~~~~~~~~~~~~~-p~-~~i~W~-~~~~~---~~---------~~~~~~~~~~--~~~~~l~i~~~~~~d~g~Y~c 213 (516)
+. |. +.+.|+ +++.. +. ...++.+... .+...|.|.+++.+|+|.|+|
T Consensus 243 ---------------~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~L~i~~v~~~d~G~Y~C 307 (585)
T 2ocw_A 243 ---------------PEVANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLRKEDAGRYLC 307 (585)
T ss_pred ---------------CCCCCceEEEEEeCCCCCcceEEeCCCcCCcccCCceEeeccCCCcEEEEEEccCChhhCEEEEE
Confidence 32 22 788887 77631 11 1234444332 233489999999999999999
Q ss_pred EEEcCCCceE----EEEEeecee-------eeeccccCCceEEEEEEEEccCCCCCcee----cccc--ccc--------
Q psy7039 214 TLENNLGTAT----ASAHVTGTE-------FTDNNVHEGKAYEYRVSAVNAAGTEKPKI----SLDA--LIG-------- 268 (516)
Q Consensus 214 ~~~~~~g~~~----~~~~~~~~~-------~~~~~l~~g~~~~~~~~~~~~~g~p~p~i----~W~~--~~~-------- 268 (516)
.+.|..+... ....+.+.. .....+.+|+.+.|.|.+ .|.|.|.+ .|.+ ...
T Consensus 308 ~a~n~g~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~G~~v~l~C~~---~~~p~p~i~~w~~W~~~~~g~~~~l~~~~ 384 (585)
T 2ocw_A 308 GAHSDGQLQEGSPIQAWQLFVNEESTIPRSPTVVKGVAGSSVAVLCPY---NRKESKSIKYWCLWEGAQNGRCPLLVDSE 384 (585)
T ss_pred EEEcCCCccccCceeeEEEEEecccccccCCcceEEEeCCcEEEEEec---CCCCCccEEEEEEEEccCCCCCceeeeec
Confidence 9998533221 333222211 123345689999999998 78898877 6865 211
Q ss_pred --------ceEEEEEe--cceeeEEEccCCCCCceEEEEEEEecCCCcceeEEEEEecCCCCCCCCceeeeccCCeeEEE
Q psy7039 269 --------KRIKEFVT--STTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMS 338 (516)
Q Consensus 269 --------~~~~~~~~--~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~ 338 (516)
.++.+... .....|.|.++..+|+|.|+|.| |..|.....+.|.|...|+...
T Consensus 385 ~~~~~~~~~r~~~~~~~~~g~~~L~I~~v~~~D~G~Y~C~a-n~~g~~~~~~~l~V~~~~p~~~---------------- 447 (585)
T 2ocw_A 385 GWVKAQYEGRLSLLEEPGNGTFTVILNQLTSRDAGFYWCLT-NGDTLWRTTVEIKIIEGEPNLK---------------- 447 (585)
T ss_pred ceeecccCCCEEEeccCCCcEEEEEECCCChhhCEEEEEcc-cCCCccceeEEEEEecCccccc----------------
Confidence 11112111 12234999999999999999999 8888888888888876543321
Q ss_pred ecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEe----eecCCceEEEECCeecCCCCc------eEE-EEc
Q psy7039 339 WKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFS----GRPKPTPIWTVNGDEVSPDGR------IKF-ETS 407 (516)
Q Consensus 339 W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~----g~p~~~i~W~~~~~~l~~~~~------~~~-~~~ 407 (516)
.+....+..|+.+.|.|.+. +.|.+.|.|++++..+..... +.. ...
T Consensus 448 ----------------------~~~~~~v~~G~~v~L~C~~~~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~ 505 (585)
T 2ocw_A 448 ----------------------VPGNVTAVLGETLKVPCHFPCKFSSYEKYWCKWNNTGCQALPSQDEGPSKAFVNCDEN 505 (585)
T ss_pred ----------------------cCCceeEecCCcEEEEEEecCCCCCCccEEEEEeecCceeeeccCCCCCcceEEecCc
Confidence 12456789999999999996 677889999999977643211 121 112
Q ss_pred CCeEEEEEcCceecCCceEEEEEEEcCCCcee-EEEEEEEecCC
Q psy7039 408 ENQTIYRNKSAKRATDSGSYTIQLVNTVGSDS-ASCKVYVVDKP 450 (516)
Q Consensus 408 ~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s-~s~~l~v~~~p 450 (516)
+....|.|.++.. .|+|.|+|.|.|..|... ..+.|.|..+|
T Consensus 506 ~~~~~L~i~~v~~-~d~G~Y~C~a~N~~G~~~~~~~~l~V~~~p 548 (585)
T 2ocw_A 506 SRLVSLTLNLVTR-ADEGWYWCGVKQGHFYGETAAVYVAVEERK 548 (585)
T ss_pred ccEEEEEECCCCc-ccCeEEEEEeEeCCCccEEEEEEEEEEeee
Confidence 3446899999999 999999999999999754 44889998776
|
| >3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.4e-26 Score=240.05 Aligned_cols=297 Identities=12% Similarity=0.061 Sum_probs=198.6
Q ss_pred cEEEeCCCcCCCeEEEEEEEecCCCCCCCCCCCcceEeccCCCCCccccCcccceEEecCCeEEEEEeeeeccccccCcc
Q psy7039 70 TSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPL 149 (516)
Q Consensus 70 ~~~~i~~l~~~~~y~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~ 149 (516)
.+|.|.+++..|.|.|+|.|.|..|... ....+.+. |.+............|+.+.|.|.+.
T Consensus 103 ~SL~I~~v~~~D~G~Y~C~~~n~~~~~~---~~~~v~v~-----~~~~~~~~~p~~~~~~~~~~L~C~a~---------- 164 (527)
T 3qs9_E 103 VSMVILKMTETQAGEYLLFIQSEATNYT---ILFTVSIR-----NTLLYTLRRPYFRKMENQDALVCISE---------- 164 (527)
T ss_dssp EEEEESSCCSSSCSEEEEEEEC--CEEE---EEEEEEEC----------CEEEEEEEECSSSSCEEEEEE----------
T ss_pred EEEEECcCChhhCeeEEEEEEeccccEE---EEEEEEEC-----CceeeccCCCcEEecCCceEEEEEEc----------
Confidence 4699999999999999999998765432 12222222 11111222223445677889999999
Q ss_pred ccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEE-EEe
Q psy7039 150 RALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATAS-AHV 228 (516)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~-~~~ 228 (516)
|.|.+.|.|++++..+..... ............+...|+|.|+|.+.|..|..... ..+
T Consensus 165 ----------------G~P~P~i~W~~~~~~~~~~~~----~~~~~~~~~~~~~~~~d~G~Y~C~A~N~~G~~~~~~~~l 224 (527)
T 3qs9_E 165 ----------------SVPEPIVEWVLCDSQGESCKE----ESPAVVKKEEKVLHELFGTDIRCCARNELGRECTRLFTI 224 (527)
T ss_dssp ----------------ESSCCEEEEEEC-----------------CEEECCSEECCCCSSCEEEEEECSSCEEEEECEEE
T ss_pred ----------------eecCCeEEEEECCCCCccccc----cCCcEEEEeeeeccccCCEEEEEEEEeCCCcccceEEEE
Confidence 999999999998765531110 01111223344456899999999999999887553 222
Q ss_pred ece-----eeeeccccCCceEEEEEEEEccCCCCCceeccccccc-----ceEEE-EE-----ecceeeEEEccCCCCCc
Q psy7039 229 TGT-----EFTDNNVHEGKAYEYRVSAVNAAGTEKPKISLDALIG-----KRIKE-FV-----TSTTASLNIKNSVRKDS 292 (516)
Q Consensus 229 ~~~-----~~~~~~l~~g~~~~~~~~~~~~~g~p~p~i~W~~~~~-----~~~~~-~~-----~~~~~~l~i~~l~~~d~ 292 (516)
.+. ......+.+|+.+.|.|.+. .|.|.|.+.|.+... ..... .. ......|.|.+++.+|+
T Consensus 225 ~V~~~p~~~p~~~~v~~G~~v~L~C~~~--~g~p~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~Ds 302 (527)
T 3qs9_E 225 DLNQTPQTTLPQLFLKVGEPLWIRCKAV--HVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDT 302 (527)
T ss_dssp ESSSCCCCSCCEEEECTTSCEEEEEEEE--ESSSCCCEEEECSSSCCCGGGEEEEEEEETTTEEEEEEEEEESSCCGGGC
T ss_pred EEeccCccCCCceEEeCCCeEEEEEEEc--cCCCCeEEEEEECCEECCCCceeeeeeeccCcceeeEEEEEEccCCcccC
Confidence 221 11344577899999999983 388999999965221 11111 11 12345699999999999
Q ss_pred eEEEEEEEecCCCcceeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCe
Q psy7039 293 GIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEE 372 (516)
Q Consensus 293 g~y~c~a~n~~g~~~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~ 372 (516)
|.|+|.|.|. ....+.|.|...|.....+ ......+..|+.
T Consensus 303 G~Y~C~a~N~---~~~~~~L~V~~~p~i~~~~------------------------------------~~~~~~v~~G~~ 343 (527)
T 3qs9_E 303 GYYTCSSSKH---PSQSALVTIVEKGFINATN------------------------------------SSEDYEIDQYEE 343 (527)
T ss_dssp EEEEEEETTE---EEEEEEEEEC--CEEECCC------------------------------------SCCEECCCTTCC
T ss_pred eEEEEEEEeC---CCceEEEEEEccCcccccc------------------------------------CcccEEEcCCCe
Confidence 9999999988 5566777776655321110 112355678999
Q ss_pred EEEEEEEeeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEEEEecCC
Q psy7039 373 FTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKP 450 (516)
Q Consensus 373 ~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~v~~~p 450 (516)
+.|.|.+.|.|.|.+.|++++..+....++. .....|.|.++.. .|+|.|+|.|.|..|....++.|.|..+|
T Consensus 344 v~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~----~~~~~L~I~~v~~-~D~G~YtC~A~N~~g~~~~~~~L~V~~~P 416 (527)
T 3qs9_E 344 FCFSVRFKAYPQIRCTWTFSRKSFPCEQKGL----DNGYSISKFCNHK-HQPGEYIFHAENDDAQFTKMFTLNIRRKP 416 (527)
T ss_dssp CCEEEEEEEESCCEEEEEETTEEEECBCCBC----SSSSEEEEECCCT-TCCSCEEEEEEETTEEEEEEEEEC--CCC
T ss_pred EEEEEEEEecCCCEEEEEECCEECcCCcccc----cCCcEEEEecCCc-ccCEEEEEEEEeCCCcEEEEEEEEEecCC
Confidence 9999999999999999999998885544322 1334689999999 99999999999999998888999888665
|
| >1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A | Back alignment and structure |
|---|
Probab=99.95 E-value=4.4e-26 Score=218.42 Aligned_cols=267 Identities=22% Similarity=0.273 Sum_probs=193.7
Q ss_pred CccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcC-ceeeEEee-CCeeecc-CCceEEe
Q psy7039 114 PRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEP-FLNHGWSI-NGQVCQI-GGRADVQ 190 (516)
Q Consensus 114 p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~i~W~~-~~~~~~~-~~~~~~~ 190 (516)
|.+. ..+....+.+|+.+.|.|.+. +.+ .+.+.|++ ++..+.. ..++.+.
T Consensus 3 ~~v~-~~p~~~~v~~G~~v~l~C~~~--------------------------~~~~~~~i~W~~~~g~~~~~~~~~~~~~ 55 (291)
T 1qz1_A 3 LQVD-IVPSQGEISVGESKFFLCQVA--------------------------GDAKDKDISWFSPNGEKLSPNQQRISVV 55 (291)
T ss_dssp CCEE-EESSSEEEETTCCEEEEEEES--------------------------SCCSCCEEEEECTTSCBCCSSCSSEEEE
T ss_pred cceE-ecCCCceEeCCCeEEEEEEeC--------------------------CCCCCcEeEEECCCCeECccCCceEEEE
Confidence 3344 455667899999999999999 765 68999999 7776653 3445443
Q ss_pred e-cCCeeEEEeccCCCCCCeeEEEEEEcCCCce-EEEEEeece---ee----eeccccCCceEEEEEEEEccCCCCCcee
Q psy7039 191 T-TKSETVLDIPFCSRSDTGHYSLTLENNLGTA-TASAHVTGT---EF----TDNNVHEGKAYEYRVSAVNAAGTEKPKI 261 (516)
Q Consensus 191 ~-~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~-~~~~~~~~~---~~----~~~~l~~g~~~~~~~~~~~~~g~p~p~i 261 (516)
. .+....|.|.+++.+|+|.|+|.+.|..|.. .....+.+. .+ ....+.+|+.+.+.|.+ .|.|.|.+
T Consensus 56 ~~~~~~~~L~i~~~~~~D~G~Y~C~~~n~~g~~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~v~l~C~~---~~~p~~~v 132 (291)
T 1qz1_A 56 WNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDV---VSSLPPTI 132 (291)
T ss_dssp EEETTEEEEEECSCCGGGCEEEEEEEECTTSCEEEEEEEEEEECCSEEEECCSSEEEETTSCEEECCEE---ECSSCCEE
T ss_pred EcCCCeEEEEEecCCCCCCEEEEEEEEcCCCCeeEEEEEEEeeccccccCCCCcccccCCCeEEEEEEe---ccCCCCEE
Confidence 2 4567899999999999999999999988643 233332221 11 23346789999999998 68899999
Q ss_pred ccccccc-----ceEEEEEecceeeEEEccCCCCCceEEEEEEEecCCCc--ceeEEEEEecCCCCCCCCceeeeccCCe
Q psy7039 262 SLDALIG-----KRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGID--MADIEVVVVSKPGPPTGPIDYTTVTPES 334 (516)
Q Consensus 262 ~W~~~~~-----~~~~~~~~~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~--~~~~~l~v~~~p~~p~~p~~~~~~~~~~ 334 (516)
.|.+... ..... .......|.|.++...|+|.|+|.|.|..+.. ...+.+.|..+|.....
T Consensus 133 ~W~~~~~~~~~~~~~~~-~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~l~v~~~p~~~~~----------- 200 (291)
T 1qz1_A 133 IWKHKGRDVILKKDVRF-IVLSNNYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVIVNVPPTVQAR----------- 200 (291)
T ss_dssp EEEETTSCSSTTCCTTE-EECTTSCEEETTCCGGGCEEEEEEEEEGGGTEEEEEEEEEEEEEEEEEEES-----------
T ss_pred EEEECCEEcccCCCceE-EEccCCcEEEccCccccCeEEEEEEEecCCCceeeEEEEEEEecCCccccc-----------
Confidence 9965211 11111 12345689999999999999999999976443 33455555544422110
Q ss_pred eEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCc--eEEEEcCCeEE
Q psy7039 335 VSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGR--IKFETSENQTI 412 (516)
Q Consensus 335 ~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~--~~~~~~~~~~~ 412 (516)
.......+..|+.+.|.|.+.|.|.+.+.|++++..+..... ...........
T Consensus 201 -------------------------~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~~~ 255 (291)
T 1qz1_A 201 -------------------------QSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSE 255 (291)
T ss_dssp -------------------------CSEEEEETTSCCCEEEEEEEEEESCCEEEEEETTEECCCC--CCSSEEECTTSCE
T ss_pred -------------------------ccccccccccCceEEEEEEEEEeCCCcEEEEECCEECcCCCCCCcceEEcCCCcE
Confidence 112344667899999999999999999999999998865431 12223344568
Q ss_pred EEEcCceecCCceEEEEEEEcCCCceeEEEEEEEec
Q psy7039 413 YRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVD 448 (516)
Q Consensus 413 l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~v~~ 448 (516)
|.|.++.. .|.|.|+|.|.|..|..+.++.|.|..
T Consensus 256 L~i~~v~~-~d~G~Y~C~a~N~~G~~~~~~~l~V~~ 290 (291)
T 1qz1_A 256 LTIRNVDK-NDEAEYVCIAENKAGEQDASIHLKVFA 290 (291)
T ss_dssp EEECSCCG-GGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred EEEEecCh-hcCEEEEEEEEeCCCceEEEEEEEEEc
Confidence 99999999 999999999999999999999998864
|
| >3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.7e-26 Score=233.11 Aligned_cols=296 Identities=13% Similarity=0.058 Sum_probs=188.7
Q ss_pred cEEEeCCCcCCCeEEEEEEEecCCCCCCCCCCCcceEeccCCCCCccccCcccceEEecCCeEEEEEeeeeccccccCcc
Q psy7039 70 TSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPL 149 (516)
Q Consensus 70 ~~~~i~~l~~~~~y~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~ 149 (516)
.+|.|.+++..|.|.|+|.|.|..|... ....+.+. .+|.+. ......+..|+.+.|.|.+.
T Consensus 103 ~sL~I~~v~~~D~G~Y~C~a~N~~g~~~---~~~~l~V~---~~p~~~--~~~p~~~~~~~~~~L~C~a~---------- 164 (423)
T 3qs7_E 103 VSMVILKMTETQAGEYLLFIQSEATNYT---ILFTVSIR---NTLLYT--LRRPYFRKMENQDALVCISE---------- 164 (423)
T ss_dssp EEEEESSCCSSSCSEEEEEEEC--CEEE---EEEEEEEC--------C--EEEEEEEECSSSSCEEEEEE----------
T ss_pred EEEEEeecCcccCEEEEEEEEcCCCcEE---EEEEEEEe---cCcccc--ccCCcEeccCCceEEEEEEe----------
Confidence 4699999999999999999999876432 12223332 234332 11223355688889999999
Q ss_pred ccccccccCccceeecCcCceeeEEeeCCeeeccCC---ceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEE-
Q psy7039 150 RALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGG---RADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATAS- 225 (516)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~---~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~- 225 (516)
|.|.+.|+|++++..+.... ...+.. .... +...|+|.|+|.|.|..|.....
T Consensus 165 ----------------G~P~P~i~W~k~~~~~~~~~~~~~~~~~~--~~~~-----l~~~d~G~Y~C~A~N~~G~~~~~~ 221 (423)
T 3qs7_E 165 ----------------SVPEPIVEWVLCDSQGESCKEESPAVVKK--EEKV-----LHELFGTDIRCCARNELGRECTRL 221 (423)
T ss_dssp ----------------ESSCCEEEEEEC-------------CEEE--CCSE-----ECCCCSSCEEEEEECSSCEEEEEC
T ss_pred ----------------eecCCeEEEEECCCCCccccccccccccc--cceE-----EecccCeEEEEEEEcCCCCcceee
Confidence 99999999999877543110 000100 0111 16789999999999999876542
Q ss_pred EEeecee-----eeeccccCCceEEEEEEEEccCC-CCCceecccccccc-----eEEE-EE-----ecceeeEEEccCC
Q psy7039 226 AHVTGTE-----FTDNNVHEGKAYEYRVSAVNAAG-TEKPKISLDALIGK-----RIKE-FV-----TSTTASLNIKNSV 288 (516)
Q Consensus 226 ~~~~~~~-----~~~~~l~~g~~~~~~~~~~~~~g-~p~p~i~W~~~~~~-----~~~~-~~-----~~~~~~l~i~~l~ 288 (516)
..+.+.. .....+.+|+.+.|.|.+ .| .|.|.+.|.+.... .... .. ......|.|.++.
T Consensus 222 ~~l~V~~~p~~~~~~~~v~~G~~v~L~C~~---~g~~p~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~ 298 (423)
T 3qs7_E 222 FTIDLNQTPQTTLPQLFLKVGEPLWIRCKA---VHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVA 298 (423)
T ss_dssp EEEESSSCCCSSTTEEEEETTSCEEEEEEE---EESSSCCCEEEEESSSBCCGGGEEEEEEEETTTEEEEEEEEEESSCC
T ss_pred EEEEEecCCccCCCceEEeCCCeEEEEEEE---EcCCCCcEEEEEECCEEccccceeecccccCCceeEEEEEEEEeecC
Confidence 2222211 123456789999999999 56 67799999652211 1111 11 1234579999999
Q ss_pred CCCceEEEEEEEecCCCcceeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEE
Q psy7039 289 RKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVL 368 (516)
Q Consensus 289 ~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~ 368 (516)
.+|+|.|+|.|.|. ....+.|.|...|.+...| ....+.+.
T Consensus 299 ~~D~G~Y~C~A~N~---~~~~~~L~V~~~p~i~~~~------------------------------------~~~~~~v~ 339 (423)
T 3qs7_E 299 RNDTGYYTCSSSKH---PSQSALVTIVEKGFINATN------------------------------------SSEDYEID 339 (423)
T ss_dssp TTTCEEEEEEETTE---EEEEEEEEEESSCEEEEC---------------------------------------CEECCC
T ss_pred HHHCEEEEEEEecC---CCceEEEEEEeCCcceEcC------------------------------------CCccEEec
Confidence 99999999999998 5667778887655321110 11245677
Q ss_pred cCCeEEEEEEEeeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEEEEec
Q psy7039 369 AGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVD 448 (516)
Q Consensus 369 ~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~v~~ 448 (516)
+|+.+.|.|.+.|.|.|.+.|++++..+..+.... .....+.+..... .|+|.|+|.|.|..|..+.++.|.|..
T Consensus 340 ~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~----~~~~~~~~~~~~~-~D~G~YtC~A~N~~G~~~~s~~L~v~~ 414 (423)
T 3qs7_E 340 QYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGL----DNGYSISKFCNHK-HQPGEYIFHAENDDAQFTKMFTLNIRS 414 (423)
T ss_dssp TTCCCCEEEEEEEESCCEEEEEETTEEEECBCCBC----SSSSEEEEECCCT-TCCSCEEEEEEETTEEEEEEEEEC---
T ss_pred CCCeEEEEEEEEEcCCCeEEEEECCEECCCccccc----cCCcEEEEEeccc-ccCEEEEEEEEcCCceEEEEEEEEEec
Confidence 89999999999999999999999998875432100 0011111245567 899999999999999999999999999
Q ss_pred CCCCC
Q psy7039 449 KPSPP 453 (516)
Q Consensus 449 ~p~~P 453 (516)
.|.+|
T Consensus 415 ~p~~~ 419 (423)
T 3qs7_E 415 GTKHH 419 (423)
T ss_dssp -----
T ss_pred CCccc
Confidence 98887
|
| >3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=4.9e-25 Score=222.52 Aligned_cols=297 Identities=11% Similarity=0.061 Sum_probs=173.5
Q ss_pred CCCeEEEEEEEecCCCCCCCCC-CCcc---------eEeccCCCCCccccCcccceEEecCCeEEEEEeeeeccccccCc
Q psy7039 79 EGETYQFQVRAVNAAGPGEASK-PTAP---------IVAKPKNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSP 148 (516)
Q Consensus 79 ~~~~y~~~~~a~n~~g~~~~s~-~~~~---------~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~ 148 (516)
..+.+.|+|...+..+...... .... +.....+..+.+. ..+..+.|.+|+++.|.|.+.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~c~~~p~~~~~~-~~~~~v~V~~G~~v~L~C~v~--------- 73 (423)
T 3qs7_E 4 NQDLPVIKCVLINHKNNDSSVGKSSSYPMVSESPEDLGCALRPQSSGTV-YEAAAVEVDVSASITLQVLVD--------- 73 (423)
T ss_dssp -----------------------------------------------------CEEEECSSCCEEEEEECS---------
T ss_pred cCCCCeeEEEEEeccCCCccccccccchhhhCCHHHcCCccCCCCCcce-eccccEEEecCCcEEEEEEEE---------
Confidence 3567899999887754432111 1111 1110001112222 334478999999999999999
Q ss_pred cccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEEe
Q psy7039 149 LRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHV 228 (516)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~ 228 (516)
+.|.+.+.|++++..+.....+.. ......+|.|.+++.+|+|.|+|.+.|..|.......+
T Consensus 74 -----------------g~P~p~i~W~~~~~~l~~~~~~~~-~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~l 135 (423)
T 3qs7_E 74 -----------------APGNISCLWVFKHSSLNCQPHFDL-QNRGVVSMVILKMTETQAGEYLLFIQSEATNYTILFTV 135 (423)
T ss_dssp -----------------CCSSCEEEEEETTEEECCCCBC------CEEEEEESSCCSSSCSEEEEEEEC--CEEEEEEEE
T ss_pred -----------------cCCCCeEEEEECCCccCccceecc-ccceEEEEEEeecCcccCEEEEEEEEcCCCcEEEEEEE
Confidence 999999999999887764332211 12234579999999999999999999998887665544
Q ss_pred eceee------eeccccCCceEEEEEEEEccCCCCCceecccccccceEEEEEecceeeEEEc-cCCCCCceEEEEEEEe
Q psy7039 229 TGTEF------TDNNVHEGKAYEYRVSAVNAAGTEKPKISLDALIGKRIKEFVTSTTASLNIK-NSVRKDSGIYKIEAKN 301 (516)
Q Consensus 229 ~~~~~------~~~~l~~g~~~~~~~~~~~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~l~i~-~l~~~d~g~y~c~a~n 301 (516)
.+... ....+..|....+.|.+ .|.|.|.++|.+.................... -+...|+|.|+|.|.|
T Consensus 136 ~V~~~p~~~~~~p~~~~~~~~~~L~C~a---~G~P~P~i~W~k~~~~~~~~~~~~~~~~~~~~~~l~~~d~G~Y~C~A~N 212 (423)
T 3qs7_E 136 SIRNTLLYTLRRPYFRKMENQDALVCIS---ESVPEPIVEWVLCDSQGESCKEESPAVVKKEEKVLHELFGTDIRCCARN 212 (423)
T ss_dssp EEC-----CEEEEEEEECSSSSCEEEEE---EESSCCEEEEEEC-------------CEEECCSEECCCCSSCEEEEEEC
T ss_pred EEecCccccccCCcEeccCCceEEEEEE---eeecCCeEEEEECCCCCccccccccccccccceEEecccCeEEEEEEEc
Confidence 33210 11123346667789988 89999999997633211100000000001111 1257899999999999
Q ss_pred cCCCcce-eEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEe
Q psy7039 302 DYGIDMA-DIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFS 380 (516)
Q Consensus 302 ~~g~~~~-~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~ 380 (516)
..|.... .+.|.|...|..+ +....+.+|+.+.|.|.+.
T Consensus 213 ~~G~~~~~~~~l~V~~~p~~~----------------------------------------~~~~~v~~G~~v~L~C~~~ 252 (423)
T 3qs7_E 213 ELGRECTRLFTIDLNQTPQTT----------------------------------------LPQLFLKVGEPLWIRCKAV 252 (423)
T ss_dssp SSCEEEEECEEEESSSCCCSS----------------------------------------TTEEEEETTSCEEEEEEEE
T ss_pred CCCCcceeeEEEEEecCCccC----------------------------------------CCceEEeCCCeEEEEEEEE
Confidence 9987643 3556665444332 1246788999999999999
Q ss_pred e-ecCCceEEEECCeecCCCCceEEEE------cCCeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEEEEecCC
Q psy7039 381 G-RPKPTPIWTVNGDEVSPDGRIKFET------SENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKP 450 (516)
Q Consensus 381 g-~p~~~i~W~~~~~~l~~~~~~~~~~------~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~v~~~p 450 (516)
| .|.+.|.|++++..+.....+.... ......|.|.++.. .|+|.|+|.|.|. .+.++.|.|..+|
T Consensus 253 g~~p~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~-~D~G~Y~C~A~N~---~~~~~~L~V~~~p 325 (423)
T 3qs7_E 253 HVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVAR-NDTGYYTCSSSKH---PSQSALVTIVEKG 325 (423)
T ss_dssp ESSSCCCEEEEESSSBCCGGGEEEEEEEETTTEEEEEEEEEESSCCT-TTCEEEEEEETTE---EEEEEEEEEESSC
T ss_pred cCCCCcEEEEEECCEEccccceeecccccCCceeEEEEEEEEeecCH-HHCEEEEEEEecC---CCceEEEEEEeCC
Confidence 8 6778999999998775443221111 11124699999999 9999999999998 6777888887655
|
| >3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=6.1e-26 Score=235.31 Aligned_cols=288 Identities=14% Similarity=0.105 Sum_probs=186.3
Q ss_pred CCcCCCeEEEEEEEecCCCCCCCCCCCcceEeccCCCCCccccCcccceEEecCCeEEEEEeeeeccccccCcccccccc
Q psy7039 76 GLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVR 155 (516)
Q Consensus 76 ~l~~~~~y~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~ 155 (516)
.+++.|.|.|+|.|.|..|..... ...+.+. .+|.+ ++..+.+.+|+.+.|.|.+.+
T Consensus 197 ~~~~~d~G~Y~C~A~N~~G~~~~~--~~~l~V~---~~p~~---~p~~~~v~~G~~v~L~C~~~~--------------- 253 (527)
T 3qs9_E 197 VLHELFGTDIRCCARNELGRECTR--LFTIDLN---QTPQT---TLPQLFLKVGEPLWIRCKAVH--------------- 253 (527)
T ss_dssp EECCCCSSCEEEEEECSSCEEEEE--CEEEESS---SCCCC---SCCEEEECTTSCEEEEEEEEE---------------
T ss_pred eccccCCEEEEEEEEeCCCcccce--EEEEEEe---ccCcc---CCCceEEeCCCeEEEEEEEcc---------------
Confidence 355889999999999988865431 1222222 23332 445688999999999999952
Q ss_pred ccCccceeecCcCceeeEEeeCCeeeccCCceEEee------cCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEEee
Q psy7039 156 ANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQT------TKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVT 229 (516)
Q Consensus 156 ~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~------~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~~ 229 (516)
+.|.+.++|++++..+.....+.... ......|.|.+++.+|+|.|+|.+.|. ......+.+.
T Consensus 254 ----------g~p~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~N~-~~~~~~L~V~ 322 (527)
T 3qs9_E 254 ----------VNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKH-PSQSALVTIV 322 (527)
T ss_dssp ----------SSSCCCEEEECSSSCCCGGGEEEEEEEETTTEEEEEEEEEESSCCGGGCEEEEEEETTE-EEEEEEEEEC
T ss_pred ----------CCCCeEEEEEECCEECCCCceeeeeeeccCcceeeEEEEEEccCCcccCeEEEEEEEeC-CCceEEEEEE
Confidence 78999999999998776543332211 112357999999999999999999987 2222222222
Q ss_pred ceee-------eeccccCCceEEEEEEEEccCCCCCceecccccccceEEE--EEecceeeEEEccCCCCCceEEEEEEE
Q psy7039 230 GTEF-------TDNNVHEGKAYEYRVSAVNAAGTEKPKISLDALIGKRIKE--FVTSTTASLNIKNSVRKDSGIYKIEAK 300 (516)
Q Consensus 230 ~~~~-------~~~~l~~g~~~~~~~~~~~~~g~p~p~i~W~~~~~~~~~~--~~~~~~~~l~i~~l~~~d~g~y~c~a~ 300 (516)
...+ ....+.+|+.+.+.|.+ .|.|.|.+.|.+... .+.. ........|.|.++..+|+|.|+|.|.
T Consensus 323 ~~p~i~~~~~~~~~~v~~G~~v~L~C~~---~g~P~p~i~W~k~g~-~l~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~ 398 (527)
T 3qs9_E 323 EKGFINATNSSEDYEIDQYEEFCFSVRF---KAYPQIRCTWTFSRK-SFPCEQKGLDNGYSISKFCNHKHQPGEYIFHAE 398 (527)
T ss_dssp --CEEECCCSCCEECCCTTCCCCEEEEE---EEESCCEEEEEETTE-EEECBCCBCSSSSEEEEECCCTTCCSCEEEEEE
T ss_pred ccCccccccCcccEEEcCCCeEEEEEEE---EecCCCEEEEEECCE-ECcCCcccccCCcEEEEecCCcccCEEEEEEEE
Confidence 1111 12356789999999998 888999999975211 1100 012245689999999999999999999
Q ss_pred ecCCCcceeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEe
Q psy7039 301 NDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFS 380 (516)
Q Consensus 301 n~~g~~~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~ 380 (516)
|..|.....+.|.|..+|..... ..| ..|.|.+.
T Consensus 399 N~~g~~~~~~~L~V~~~P~i~~~--------------------------------------------~~~--~~l~C~a~ 432 (527)
T 3qs9_E 399 NDDAQFTKMFTLNIRRKPQVLAE--------------------------------------------ASA--SQASCFSD 432 (527)
T ss_dssp ETTEEEEEEEEEC--CCCEEEEC--------------------------------------------CCC--E---EEEE
T ss_pred eCCCcEEEEEEEEEecCCeEEEe--------------------------------------------CCC--CEEEEEEE
Confidence 99999888888888755432100 011 24799999
Q ss_pred eecCCceEEEECCeecCC-CCc-----e-----EEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEEEEec
Q psy7039 381 GRPKPTPIWTVNGDEVSP-DGR-----I-----KFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVD 448 (516)
Q Consensus 381 g~p~~~i~W~~~~~~l~~-~~~-----~-----~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~v~~ 448 (516)
|.|.|.|.|++++..... ... . ............+.-... .|.|.|+|.|.|..|..+..+.|.|..
T Consensus 433 g~P~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~-~d~G~Y~C~A~N~~G~~~~~~~L~V~~ 510 (527)
T 3qs9_E 433 GYPLPSWTWKKCSDKSPNCTEEITEGVWNRKANRKVFGQWVSSSTLNMSEA-IKGFLVKCCAYNSLGTSCETILLNSPG 510 (527)
T ss_dssp CSSCCEEEEECCC-----CCCCCCCCEEEC---------CEEEEECCCCCS-SCSCEEEEEEECSSCEEEEEEEC----
T ss_pred EEcCCeEEEEECCCCcCCCccccccccceeccccccCCceEEEEEEEEEEc-CCCEEEEEEEEeCCCCceeEEEEecCC
Confidence 999999999987654311 000 0 001111122333433445 899999999999999999988886643
|
| >2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.5e-24 Score=209.89 Aligned_cols=271 Identities=15% Similarity=0.185 Sum_probs=191.0
Q ss_pred cceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEeecCCeeEEEec
Q psy7039 122 NDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIP 201 (516)
Q Consensus 122 ~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~ 201 (516)
..+.+.+|+.+.|.|.... +.|.+.+.|++++..+....++.+...+....|.|.
T Consensus 9 ~~~~v~eg~~v~l~~~~~~-------------------------~~p~~~v~W~k~~~~i~~~~~~~~~~~~~~~~L~I~ 63 (312)
T 2y23_A 9 VVVNVDDDGVISLNFECDK-------------------------MTPKSEFSWSKDYVSTEDSPRLEVESKGNKTKMTFK 63 (312)
T ss_dssp CEEEECTTCCEEEEEECSS-------------------------CCTTCCEEEEETTEECTTCTTEEEEEETTEEEEEES
T ss_pred eeEEEecCCeEEEEEEEeC-------------------------CCCCcEEEEEECCEECCCCCCEEEEEeCCEEEEEEC
Confidence 3477889999999887752 689999999999999988889988888888899999
Q ss_pred cCCCCCCeeEEEEEEcCCCceEEEEEeece-----------------ee---eeccccCCceEEEEEEEEccC-CCCCce
Q psy7039 202 FCSRSDTGHYSLTLENNLGTATASAHVTGT-----------------EF---TDNNVHEGKAYEYRVSAVNAA-GTEKPK 260 (516)
Q Consensus 202 ~~~~~d~g~Y~c~~~~~~g~~~~~~~~~~~-----------------~~---~~~~l~~g~~~~~~~~~~~~~-g~p~p~ 260 (516)
+++.+|+|.|+|.+.|..|... +..+... .. ....+.+|..+.+.|.+ . |.|.+.
T Consensus 64 ~~~~~D~G~Y~C~~~n~~g~~~-s~~l~v~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~G~~v~l~C~~---~~~~p~~~ 139 (312)
T 2y23_A 64 DLGMDDLGIYSCDVTDTDGIAS-SYLIDEEELKRLLALSHEHKFPTVPVKSELAVEILEKGQVRFWMQA---EKLSGNAK 139 (312)
T ss_dssp SCCGGGCEEEEEEESSSCCCCE-EEEECHHHHHHHHHHHHHHHSCBCCEEEEEEEEECSSSCEEEEEEE---SCCCSSCE
T ss_pred cCCccCCEEEEEEEEeCCCcEE-EEEEEEeeeeeeecccccCCCCccccccCCceEEeeCCCEEEEEEE---EeCCCCCE
Confidence 9999999999999999887554 2322211 00 24567789999999998 5 889999
Q ss_pred eccccc-----ccceEEEEEe--cceeeEEEccCCCCCceEEEEEEEecCCCcceeEEEEEecCCCCCC---CCceeeec
Q psy7039 261 ISLDAL-----IGKRIKEFVT--STTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPT---GPIDYTTV 330 (516)
Q Consensus 261 i~W~~~-----~~~~~~~~~~--~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~p~---~p~~~~~~ 330 (516)
+.|.+. ...++.+... .....|.|.++..+|+|.|+|.|.|..+. ....+.+........ .++.....
T Consensus 140 v~W~~~~~~i~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (312)
T 2y23_A 140 VNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKAT--NHSTVVLVGDVFKKLQKEAEFQRQEW 217 (312)
T ss_dssp EEEEETTEEECSSSSCEEEEETTTTEEEEEESCCCGGGCEEEEEEEESSSCE--EEEEEEECTHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCEECeeCCcEEEEEccCCCEEEEEEccCCcccCEeEEEEEEeCCce--EEEEEEEcchhhhhhcccccccccch
Confidence 999652 1222333322 44566999999999999999999764433 233333311000000 00000000
Q ss_pred cCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeeecCC-ceEEEECCeecCCCCceEEEEcCC
Q psy7039 331 TPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKP-TPIWTVNGDEVSPDGRIKFETSEN 409 (516)
Q Consensus 331 ~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~-~i~W~~~~~~l~~~~~~~~~~~~~ 409 (516)
+.-.+|. + .......+..|+.+.|.|.+.+.|.+ .+.|++++..+..+.++.+. .+
T Consensus 218 ------~~~~~p~------~---------~~~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~g~~~~~~~~~~~~--~~ 274 (312)
T 2y23_A 218 ------IRKQGPH------F---------VEYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFK--DG 274 (312)
T ss_dssp ------HHHHSSE------E---------EEEEEEEEETTTEEEEEEEEESCCSSCEEEEEETTEEEEEECCC------C
T ss_pred ------hhccCCc------e---------eecceEEEeCCCEEEEEEEEcCCCCCCEEEEeeCCEECCCCCcEEEE--CC
Confidence 0000000 0 01122578899999999999999998 99999999988755565544 44
Q ss_pred eEEEEEcCceecCCceEEEEEEEcCCCceeEEEEEEEe
Q psy7039 410 QTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVV 447 (516)
Q Consensus 410 ~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~v~ 447 (516)
...|.|.++.. .|+|.|+|.|.|..|....++.|++.
T Consensus 275 ~~~L~I~~v~~-~d~G~Y~C~a~N~~G~~~~~~~l~i~ 311 (312)
T 2y23_A 275 ICTLLITEFSK-KDAGIYEVILKDDRGKDKSRLKLVDE 311 (312)
T ss_dssp EEEEEECSCSG-GGCEEEEEEEESTTCCEEEEEEECSC
T ss_pred EEEEEECcCCH-HHCEEEEEEEEcCCCceeeeeEEEec
Confidence 57899999999 99999999999999999888887653
|
| >1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.93 E-value=1.8e-26 Score=225.88 Aligned_cols=266 Identities=19% Similarity=0.228 Sum_probs=132.4
Q ss_pred CcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCc-CceeeEEeeCCeeeccCCceEEeecCCeeE
Q psy7039 119 STLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSE-PFLNHGWSINGQVCQIGGRADVQTTKSETV 197 (516)
Q Consensus 119 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~ 197 (516)
..+..+.+.+|+.+.|.|.+. +. |.+.+.|++++..+....++.+ ....
T Consensus 13 ~~~~~~~v~~G~~v~l~C~~~--------------------------~~~p~~~v~W~k~g~~~~~~~~~~~----~~~~ 62 (334)
T 1ry7_B 13 GQQEQLVFGSGDAVELSCPPP--------------------------GGGPMGPTVWVKDGTGLVPSERVLV----GPQR 62 (334)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCcCcEEEecCCcEEEEeeCC--------------------------CCCCCcceEEEECCeeCCCcccEEe----ccce
Confidence 346778899999999999998 65 6789999999988876655544 3468
Q ss_pred EEeccCCCCCCeeEEEEEEcCCCceEEEEEeeceee---------------------------------eeccccCCceE
Q psy7039 198 LDIPFCSRSDTGHYSLTLENNLGTATASAHVTGTEF---------------------------------TDNNVHEGKAY 244 (516)
Q Consensus 198 l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~~~~~~---------------------------------~~~~l~~g~~~ 244 (516)
|.|.+++.+|+|.|+|.+.|. |.......+.+... ....+..|..+
T Consensus 63 L~i~~v~~~D~G~Y~C~a~n~-~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~~~~~~~v~~g~~v 141 (334)
T 1ry7_B 63 LQVLNASHEDSGAYSCRQRLT-QRVLCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWTRPERMDKKLLAVPAANTV 141 (334)
T ss_dssp ---------------------------------------------------------CCCCSCCTTCCCCEEEEETTCCE
T ss_pred EEEeecccccCEEEEEEEEeC-CeEEEEEEEEEeccCccccccccccccccccccCCCCEEeccccccceeEEecCCCcE
Confidence 999999999999999999987 55444333222110 11245679999
Q ss_pred EEEEEEEccCCCCCceecccccccc-----eE-EEEEecceeeEEEccCCCCCceEEEEEEEecCCCcceeEEEEEecCC
Q psy7039 245 EYRVSAVNAAGTEKPKISLDALIGK-----RI-KEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKP 318 (516)
Q Consensus 245 ~~~~~~~~~~g~p~p~i~W~~~~~~-----~~-~~~~~~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p 318 (516)
.|.|.+ .|.|.|.+.|.+.... .. ..........|.|.++...|+|.|+|.|.|..|.....+.|.|...+
T Consensus 142 ~l~C~~---~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~ 218 (334)
T 1ry7_B 142 RFRCPA---AGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERS 218 (334)
T ss_dssp EEECCC---CCSSCCEEECCBTTBCCCTTSSTTCCCCCTTTTEEEECSCCGGGCCCEEEEEEETTEEEEEEEEEEEECCC
T ss_pred EEEEEc---cCCCCCeEEEEECCEECcccccccceecccceEEEEECCCCcccCEEEEEEEEeCCCCEEEEEEEEEecCC
Confidence 999987 7889999999752111 00 11123455689999999999999999999999888888888887654
Q ss_pred CCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeeecCCceEEEE----CCe
Q psy7039 319 GPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTV----NGD 394 (516)
Q Consensus 319 ~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~----~~~ 394 (516)
..+.. +. ...+....+..|+.+.|.|.+.|.|.+.+.|++ ++.
T Consensus 219 ~~~p~-~~--------------------------------~~~~~~~~~~~G~~v~l~C~~~g~p~p~v~W~~~~~~~g~ 265 (334)
T 1ry7_B 219 PHRPI-LQ--------------------------------AGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGS 265 (334)
T ss_dssp CSSCB-CC--------------------------------TTCSCCEEEESSCCEEECCCCBCSSCEEEEEEECCCGGGC
T ss_pred CCCCc-eE--------------------------------ecCCCceEEeCCCCEEEEEEEecCCCCeEEEEECCcCCCc
Confidence 32110 00 012345678999999999999999999999999 666
Q ss_pred ecCCCCc--eEEEEc-------CCeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEEEEecCCCC
Q psy7039 395 EVSPDGR--IKFETS-------ENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSP 452 (516)
Q Consensus 395 ~l~~~~~--~~~~~~-------~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~v~~~p~~ 452 (516)
.+..+.. +.+... .....|.|.++.. .|.|.|+|.|.|..|....++.|.|...|.+
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~-~d~G~Y~C~a~N~~G~~~~~~~l~V~~~~~~ 331 (334)
T 1ry7_B 266 KVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTF-EDAGEYTCLAGNSIGFSHHSAWLVVLPAEEE 331 (334)
T ss_dssp SBCTTSSBCCCCCCCSSCSCSCTTCCCEEECSCCT-TSCSEEEEEEEESSCCEEEEEEEEEECSCCC
T ss_pred cccCCCCeeEEEeecCccccccccccEEEEccCCH-HHCEEEEEEEeCCCCeEEEEEEEEEEECCCC
Confidence 5543322 111111 1123699999999 9999999999999999999999999876644
|
| >1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E | Back alignment and structure |
|---|
Probab=99.93 E-value=2.5e-25 Score=220.59 Aligned_cols=273 Identities=15% Similarity=0.162 Sum_probs=200.3
Q ss_pred ceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeecc--------------CCceE
Q psy7039 123 DVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQI--------------GGRAD 188 (516)
Q Consensus 123 ~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~--------------~~~~~ 188 (516)
.+.+.+|+.+.|.|.+. +.|.+.+.|++++..+.. ..|+.
T Consensus 3 ~v~~~~G~~v~L~C~~~--------------------------~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~ 56 (363)
T 1wio_A 3 VVLGKKGDTVELTCTAS--------------------------QKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRAD 56 (363)
T ss_dssp EEEEETTSCEEECCCCT--------------------------TCSSCCEEEEETTCCEEEEEETTEEEECSSTTGGGEE
T ss_pred eEEEeCCCeEEEEEEec--------------------------CCCceEEEEEeCCccceeccCccEEecCCccccccee
Confidence 36788999999999999 899999999998754211 12333
Q ss_pred Eee---cCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEEeeceee-eeccccCCceEEEEEEEEccCCCCCceeccc
Q psy7039 189 VQT---TKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVTGTEF-TDNNVHEGKAYEYRVSAVNAAGTEKPKISLD 264 (516)
Q Consensus 189 ~~~---~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~~~~~~-~~~~l~~g~~~~~~~~~~~~~g~p~p~i~W~ 264 (516)
+.. .....+|.|.+++.+|+|.|+|.+.|..+..... +..... ....+.+|+.+.|.|.+ .|.|.|.+.|.
T Consensus 57 ~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~~~~~l~--V~~~~~~~~~~v~~G~~v~l~C~~---~~~p~~~v~W~ 131 (363)
T 1wio_A 57 SRRSLWDQGNFPLIIKNLKIEDSDTYICEVEDQKEEVQLL--VFGLTANSDTHLLQGQSLTLTLES---PPGSSPSVQCR 131 (363)
T ss_dssp CCHHHHHTTCCCEEECSCCGGGCEEEEEEETTEEEEEEEE--EEEEEESSCSSEESBSCEEEEEEC---CTTCCCCEEEE
T ss_pred eeeccccCCeEEEEECCCCHHHCEEEEEEEEECCCcEEEE--EEeCCCCCceEEecCCCEEEEEEc---CCCCCCeEEEE
Confidence 222 3346689999999999999999998875433222 221111 22467789999999988 67899999998
Q ss_pred ccccceEEEEEecceeeEEEccCCCCCceEEEEEEEecCCCcceeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCC
Q psy7039 265 ALIGKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVD 344 (516)
Q Consensus 265 ~~~~~~~~~~~~~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~ 344 (516)
+..... ......|.|.++..+|+|.|+|.|.|..+.....+.+.|...|..
T Consensus 132 ~~~~~~-----~~~~~~L~i~~v~~~d~G~Y~C~a~~~~~~~~~~~~l~v~~~p~~------------------------ 182 (363)
T 1wio_A 132 SPRGKN-----IQGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQKA------------------------ 182 (363)
T ss_dssp CSSSCE-----EEESSEEEECSBCGGGCEECEEEEEETTEEEEECCEECEECCSCS------------------------
T ss_pred cCCCcc-----cccceEEEEeeCChhcCCEEEEEEecCCCeEEEEEEEEEecCCCC------------------------
Confidence 654332 235678999999999999999999998766666666666644432
Q ss_pred CCCCceeeccccccccccccEEEEcCCeEEEEEEEee-----ecCCceEEEECCeecCC--------CCceEEEE-----
Q psy7039 345 DGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSG-----RPKPTPIWTVNGDEVSP--------DGRIKFET----- 406 (516)
Q Consensus 345 ~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g-----~p~~~i~W~~~~~~l~~--------~~~~~~~~----- 406 (516)
+....+.+|+.+.|.|.+.+ .|.+.+.|++++..+.. +.++.+..
T Consensus 183 -----------------~~~~~~~~G~~v~l~C~~~~~~~~~~P~p~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (363)
T 1wio_A 183 -----------------SSIVYKKEGEQVEFSFPLAFTVEKLTGSGELWWQAERASSSKSWITFDLKNKEVSVKRVTQDP 245 (363)
T ss_dssp -----------------EEEEEEETBCCEEEECCCCCCCCSSCEEEEEEEEESSCCCCCCEEEEEECSSCEEEEEEECSS
T ss_pred -----------------CCceEEecCCEEEEEEEEecccccCCCceeEEEecCCCCccceEEEEEecCCeeeccccccch
Confidence 13456789999999998877 78889999999987755 44554432
Q ss_pred -----cCCeEEEEEcCceecCCceEEEEEEEcC--CCceeEEEEEEEecCCCCCCCCccccccc--CCeEEEEeeCC
Q psy7039 407 -----SENQTIYRNKSAKRATDSGSYTIQLVNT--VGSDSASCKVYVVDKPSPPQGPLDVSDIT--PESCSLSWKPP 474 (516)
Q Consensus 407 -----~~~~~~l~i~~~~~~~~~g~y~c~a~n~--~G~~s~s~~l~v~~~p~~P~~~l~~~~~~--~~~~~l~W~~p 474 (516)
......|.|.++.. .|+|.|+|.|.|. .|..+..+.|.|...+..+ ..|...... ...+.+.|...
T Consensus 246 ~~~~~~~~~~~L~i~~v~~-~d~G~Y~C~a~n~~~~g~~~~~~~l~V~~v~g~~-~~l~C~~~g~p~p~~~i~W~~~ 320 (363)
T 1wio_A 246 KLQMGKKLPLHLTLPQALP-QYAGSGNLTLALEAKTGKLHQEVNLVVMRATQLQ-KNLTCEVWGPTSPKLMLSLKLE 320 (363)
T ss_dssp CCBCCSSSSCEEEESSBCG-GGCEEEEEEECBTTTTCCEEEEEEEEEEEECCCS-SSEEEEEESSCCTTCCEEEECS
T ss_pred hhhcccCCceEEEEccCCc-CcCcEEEEEEEEhhhcCeEEEEEeEEEEEecCCC-eeEEEEEccccCCCccEEEEeC
Confidence 22234899999999 9999999999999 9998888899888655444 344433222 23456899753
|
| >1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1 | Back alignment and structure |
|---|
Probab=99.93 E-value=1.6e-25 Score=227.58 Aligned_cols=310 Identities=15% Similarity=0.113 Sum_probs=202.5
Q ss_pred cCCcEEEeCCCcCCCeEEEEEEEecCCCCCCCCCCCcceEeccCCCCCccccCcccceEEecCCeEEEEEeeeecccccc
Q psy7039 67 AGETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTK 146 (516)
Q Consensus 67 ~~~~~~~i~~l~~~~~y~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~ 146 (516)
....+|.|.+++..|.|.|+|.|.|..+.... ....+.+.....+|.+....+.. .+.+|+.+.|.|.+.
T Consensus 72 ~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~--~~~~l~V~~~~~~P~v~~~~~~~-~~~~g~~~~l~C~~~------- 141 (438)
T 1qgc_4 72 RTDFTLTIDPVEADDVATYYCQQSNEVPLTFG--AGTKLDLKRADAAPTVSIFPPSS-EQLTSGGASVVCFLN------- 141 (438)
T ss_dssp TTEEEEEESSCCGGGCEEEEEEECSSTTCCBC--CCEEEEECCCCBCCEEEEECCCH-HHHHTTEEEEEEEEE-------
T ss_pred CCcEEEEeCCCcCcCCeeEEEEEecCCCcccc--CceeEEecCCCCCCEEEecCCCh-hhccCCceEEEEEEc-------
Confidence 34568999999999999999999987653221 12233333333466655222222 234688999999998
Q ss_pred CccccccccccCccceeecC-cCce-eeEEeeCCeeeccCCce--EEee--cCC---eeEEEeccCCCCCCeeEEEEEEc
Q psy7039 147 SPLRALGVRANSTKGWVKLS-EPFL-NHGWSINGQVCQIGGRA--DVQT--TKS---ETVLDIPFCSRSDTGHYSLTLEN 217 (516)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~-~p~~-~i~W~~~~~~~~~~~~~--~~~~--~~~---~~~l~i~~~~~~d~g~Y~c~~~~ 217 (516)
+ .|.+ .+.|++++..+...... .... .+. .+.|.|.++..+|+|.|+|.+.|
T Consensus 142 -------------------g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n 202 (438)
T 1qgc_4 142 -------------------NFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATH 202 (438)
T ss_dssp -------------------EEBSSCEEEEEEETTEEECTTEEEEEECCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEEE
T ss_pred -------------------cccCCCcEEEEEECCEEcCCCceeccccccCCCCcEEEEEEEEEeCcccCCCCeEEEEEEe
Confidence 5 6666 99999999888654111 1111 111 35899999999999999999999
Q ss_pred CCCceEEEEEeec-------eeeeeccccCCceEEEEEEEEccCCCC--Cceecccccc-c-------------------
Q psy7039 218 NLGTATASAHVTG-------TEFTDNNVHEGKAYEYRVSAVNAAGTE--KPKISLDALI-G------------------- 268 (516)
Q Consensus 218 ~~g~~~~~~~~~~-------~~~~~~~l~~g~~~~~~~~~~~~~g~p--~p~i~W~~~~-~------------------- 268 (516)
..+.......+.. .......+.+|+.+.|.|.+ .|.| .+.+.|.+.. +
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~---~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~ 279 (438)
T 1qgc_4 203 KTSTSPIVKSFNRNECEVMLVESGGGLVKPGGSLKLSCTA---SGFIFNRCAMSWVRQTPEKRLEWVATISSGGTYTYYP 279 (438)
T ss_dssp TTCSSCEEEEEETTC-CCEEEEECCEEECTTCCEEEEEEE---ESSCGGGSCEEEEEEETTTEEEEEEEECTTSCCEECC
T ss_pred cccCCceecccccccceeEEecCCceEEecCCcEEEEEEE---cccccCCcEEEEEECCCCCCcEEEEEEeecCCceecC
Confidence 8887433333221 11123457789999999998 6777 6789996531 1
Q ss_pred ----ceEEEEEe--cceeeEEEccCCCCCceEEEEEEEecCC-----CcceeEEEEEecCCCCCCCCceeeeccCCeeEE
Q psy7039 269 ----KRIKEFVT--STTASLNIKNSVRKDSGIYKIEAKNDYG-----IDMADIEVVVVSKPGPPTGPIDYTTVTPESVSM 337 (516)
Q Consensus 269 ----~~~~~~~~--~~~~~l~i~~l~~~d~g~y~c~a~n~~g-----~~~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l 337 (516)
.++.+... .....|.|.+++.+|+|.|+|.|.|..+ .......+.|...+..+ |....
T Consensus 280 ~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~~~~~l~V~~~~~~~--P~v~~--------- 348 (438)
T 1qgc_4 280 DSVKGRFTISRDNAKNTLYLQMSSLRSADTAMYYCVRREDGGDEGFAYWGQGTVVTVSAAKTTP--PSVYP--------- 348 (438)
T ss_dssp GGGTTTEEEEEETTTTEEEEEECSCCGGGCCEEEEEECCSSSCCCCCSBCCCEEEEECSSCCBC--CEEEE---------
T ss_pred cccCCcEEEEeecCCCeEEEEECCCChhhCEEEEEEEEccCCCccceeeCCCEEEEEecCCCCC--CeEEE---------
Confidence 12222221 2356899999999999999999998544 22234566665432111 10000
Q ss_pred EecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeee-cCC-ceEEEECCeecCCCCceEEEEcCC---eEE
Q psy7039 338 SWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGR-PKP-TPIWTVNGDEVSPDGRIKFETSEN---QTI 412 (516)
Q Consensus 338 ~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~-p~~-~i~W~~~~~~l~~~~~~~~~~~~~---~~~ 412 (516)
......+..|+.+.|.|.+.|. |.+ .+.|++++..+...........+. .+.
T Consensus 349 -----------------------~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~~g~~~~~~~~~~~~~~g~~~~~s~ 405 (438)
T 1qgc_4 349 -----------------------LAPGSAAAAASMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSS 405 (438)
T ss_dssp -----------------------ECCCGGGCCSSEEEEEEEEESCBSSCCEEEEGGGTCCSSEEECCCEEETTEEEEEEE
T ss_pred -----------------------cCcccccccCCcEEEEEEeccccCCCcEEEEecCCCCCceeecCccccCCcEEEEEE
Confidence 0001124579999999999997 877 999999987764211111111111 136
Q ss_pred EEEcCceecCCceEEEEEEEcCCCceeEEEEE
Q psy7039 413 YRNKSAKRATDSGSYTIQLVNTVGSDSASCKV 444 (516)
Q Consensus 413 l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l 444 (516)
|.|..+.. .| |.|+|.|.|..|.......+
T Consensus 406 L~i~~~~~-~d-g~Y~C~a~n~~g~~~~~~~i 435 (438)
T 1qgc_4 406 VTVPSSTW-PS-ETVTCNVAHPASSTKVDKKI 435 (438)
T ss_dssp EEEEEEHH-HH-SCCEEEEEEGGGTEEEEEEC
T ss_pred EEEehhhc-CC-ceEEEEEEeCCCCcceeeec
Confidence 89988887 78 99999999999987665544
|
| >1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.93 E-value=2.4e-24 Score=215.79 Aligned_cols=302 Identities=19% Similarity=0.215 Sum_probs=208.2
Q ss_pred CCCCccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecC-cCceeeEEeeCCeeeccCCceEE
Q psy7039 111 NLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLS-EPFLNHGWSINGQVCQIGGRADV 189 (516)
Q Consensus 111 ~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~p~~~i~W~~~~~~~~~~~~~~~ 189 (516)
..+|.|. ..+..+.+.+|+.+.|.|.+. + .|.+.+.|++++..+....+ .+
T Consensus 4 ~~~P~~~-~~p~~~~v~~G~~v~l~C~~~--------------------------~~~p~~~v~W~k~g~~~~~~~~-~~ 55 (395)
T 1bih_A 4 DKYPVLK-DQPAEVLFRENNPTVLECIIE--------------------------GNDQGVKYSWKKDGKSYNWQEH-NA 55 (395)
T ss_dssp -CCCEEC-CCCSEEEEETTSCEEECCCEE--------------------------SCCSSCEEEEEESSSBCCTTTT-TE
T ss_pred CCCCEee-cCCCceEEeCCCEEEEEEEEe--------------------------cCCCCceEEEEECCcCcccccc-eE
Confidence 3578887 667789999999999999999 7 88999999999988876543 22
Q ss_pred eecCCeeEEEeccCCCCCCeeEEEEEEcCCCceEE---EEEeec-----eeeeeccccCCceEEEEEEEEccCCCCCcee
Q psy7039 190 QTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATA---SAHVTG-----TEFTDNNVHEGKAYEYRVSAVNAAGTEKPKI 261 (516)
Q Consensus 190 ~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~---~~~~~~-----~~~~~~~l~~g~~~~~~~~~~~~~g~p~p~i 261 (516)
.......+|.|.+++.+|+|.|+|.+.|..|.... .+.+.. .......+.+|+.+.|.|.+ ..|.|.+.+
T Consensus 56 ~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~s~~~~l~v~~~~~p~~~~~~~~~~~G~~v~l~C~~--~~~~p~~~v 133 (395)
T 1bih_A 56 ALRKDEGSLVFLRPQASDEGHYQCFAETPAGVASSRVISFRKTYLIASPAKTHEKTPIEGRPFQLDCVL--PNAYPKPLI 133 (395)
T ss_dssp EECTTSCCEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEEEECCCCEEEEECCBTTEEEEECCCC--CEEESCCEE
T ss_pred EEecCCceEEEecCCCCCCcEEEEEEEeCCCeEEeEEEEEEEEEeecCCcCCcceeeeeCCcEEEEecC--CCCCCCCeE
Confidence 22345568999999999999999999998776542 111111 11233456789999999984 257788999
Q ss_pred cccccc------------cceEEEEEecceeeEEEccCCCCCce---EEEEEEEecCCCcceeEEEEEecCCCCCCCCce
Q psy7039 262 SLDALI------------GKRIKEFVTSTTASLNIKNSVRKDSG---IYKIEAKNDYGIDMADIEVVVVSKPGPPTGPID 326 (516)
Q Consensus 262 ~W~~~~------------~~~~~~~~~~~~~~l~i~~l~~~d~g---~y~c~a~n~~g~~~~~~~l~v~~~p~~p~~p~~ 326 (516)
.|.+.. ..+.. ....+.|.|.++...|.| .|+|.|.|..|................+..+..
T Consensus 134 ~W~~~~~~~~~~~~~~~~~~~~~---~~~~~~L~i~~v~~~d~G~~~~Y~C~a~n~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (395)
T 1bih_A 134 TWKKRLSGADPNADVTDFDRRIT---AGPDGNLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYK 210 (395)
T ss_dssp EEEEEETTSCGGGCCCCCCTTEE---ECTTSCEEEEEECGGGCCSSEEEEEEEECTTCSSCEEEEEEEECCCBCCSSCCC
T ss_pred EEEecCCCcCcccccccccccEE---EcCCCcEEEEEEeeccCCCceEEEEEEEecccceEEEeeeEEeccccccccccc
Confidence 996632 12222 234568999999999999 999999999888654433322221111100000
Q ss_pred eeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCC--ceEE
Q psy7039 327 YTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDG--RIKF 404 (516)
Q Consensus 327 ~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~--~~~~ 404 (516)
. .+... ..+....+..|+.+.|.|.+.|.|.+.+.|++++..+.... ++..
T Consensus 211 ~------~~~p~---------------------~~~~~~~~~~G~~v~l~C~~~g~p~~~i~W~~~g~~~~~~~~~~~~~ 263 (395)
T 1bih_A 211 G------EPVPQ---------------------YVSKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITR 263 (395)
T ss_dssp C------CCEEE---------------------EECCSEEEETTSCEEEEEEEECSSCCCCEEEETTEECCCCTTSSEES
T ss_pred C------CcCce---------------------ecCCceEEECCCcEEEEEEeccCCCCeEEEEECCEEcCCCCceeEEE
Confidence 0 00000 01245678999999999999999999999999998875433 2322
Q ss_pred EEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeE-EEEEEEecCCCCCCCCcc-cccccCCeEEEEeeC
Q psy7039 405 ETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSA-SCKVYVVDKPSPPQGPLD-VSDITPESCSLSWKP 473 (516)
Q Consensus 405 ~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~-s~~l~v~~~p~~P~~~l~-~~~~~~~~~~l~W~~ 473 (516)
........|.|.++.. .|.|.|+|.|.|..|.... ++.|.|..+|.....+.. .....++.+.|.+..
T Consensus 264 ~~~~~~~~L~i~~~~~-~d~G~Y~C~a~n~~g~~~~~~~~l~V~~~P~~~~~~~~~~~~~~g~~~~l~C~~ 333 (395)
T 1bih_A 264 HNRTSGKRLLFKTTLP-EDEGVYTCEVDNGVGKPQKHSLKLTVVSAPKYEQKPEKVIVVKQGQDVTIPCKV 333 (395)
T ss_dssp CSSSTTSEEEESSCCG-GGCEEEEEEECCSSSSCEEEEEEEEEEEEEEEEECCCSEEEECTTSCEEEECEE
T ss_pred EecCCCceEEEccCCh-hhCEEEEEEEEeCCCCceEEEEEEEEEcCCccccCCCcceEecCCCeEEEEEEE
Confidence 2222334799999999 9999999999999998654 888888876642211111 333456677777653
|
| >1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E | Back alignment and structure |
|---|
Probab=99.93 E-value=1.8e-24 Score=214.29 Aligned_cols=262 Identities=12% Similarity=0.120 Sum_probs=192.3
Q ss_pred CCcEEEeCCCcCCCeEEEEEEEecCCCCCCCCCCCcceEeccCCCCCccccCcccceEEecCCeEEEEEeeeeccccccC
Q psy7039 68 GETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKS 147 (516)
Q Consensus 68 ~~~~~~i~~l~~~~~y~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~ 147 (516)
...+|.|.+++..|.|.|+|.|.|..+ ...+.+......| ...+.+|+.+.|.|.+.
T Consensus 65 ~~~~L~I~~v~~~D~G~Y~C~~~n~~~-------~~~l~V~~~~~~~--------~~~v~~G~~v~l~C~~~-------- 121 (363)
T 1wio_A 65 GNFPLIIKNLKIEDSDTYICEVEDQKE-------EVQLLVFGLTANS--------DTHLLQGQSLTLTLESP-------- 121 (363)
T ss_dssp TCCCEEECSCCGGGCEEEEEEETTEEE-------EEEEEEEEEEESS--------CSSEESBSCEEEEEECC--------
T ss_pred CeEEEEECCCCHHHCEEEEEEEEECCC-------cEEEEEEeCCCCC--------ceEEecCCCEEEEEEcC--------
Confidence 356799999999999999999988643 1222222111111 13568999999999999
Q ss_pred ccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEE
Q psy7039 148 PLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAH 227 (516)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~ 227 (516)
+.|.+.+.|++++..+. .....|.|.+++.+|+|.|+|.+.+..+.......
T Consensus 122 ------------------~~p~~~v~W~~~~~~~~----------~~~~~L~i~~v~~~d~G~Y~C~a~~~~~~~~~~~~ 173 (363)
T 1wio_A 122 ------------------PGSSPSVQCRSPRGKNI----------QGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKID 173 (363)
T ss_dssp ------------------TTCCCCEEEECSSSCEE----------EESSEEEECSBCGGGCEECEEEEEETTEEEEECCE
T ss_pred ------------------CCCCCeEEEEcCCCccc----------ccceEEEEeeCChhcCCEEEEEEecCCCeEEEEEE
Confidence 88999999999875442 13458999999999999999999987665555444
Q ss_pred eeceee----eeccccCCceEEEEEEEEccCC-----CCCceecccccc-------------cceEEEEE----------
Q psy7039 228 VTGTEF----TDNNVHEGKAYEYRVSAVNAAG-----TEKPKISLDALI-------------GKRIKEFV---------- 275 (516)
Q Consensus 228 ~~~~~~----~~~~l~~g~~~~~~~~~~~~~g-----~p~p~i~W~~~~-------------~~~~~~~~---------- 275 (516)
+.+..+ ....+.+|+.+.|.|.+ .| .|.|.+.|.+.. .....+..
T Consensus 174 l~v~~~p~~~~~~~~~~G~~v~l~C~~---~~~~~~~~P~p~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (363)
T 1wio_A 174 IVVLAFQKASSIVYKKEGEQVEFSFPL---AFTVEKLTGSGELWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMG 250 (363)
T ss_dssp ECEECCSCSEEEEEEETBCCEEEECCC---CCCCCSSCEEEEEEEEESSCCCCCCEEEEEECSSCEEEEEEECSSCCBCC
T ss_pred EEEecCCCCCCceEEecCCEEEEEEEE---ecccccCCCceeEEEecCCCCccceEEEEEecCCeeeccccccchhhhcc
Confidence 333222 23446779999999977 44 678999996521 22222211
Q ss_pred ecceeeEEEccCCCCCceEEEEEEEec--CCCcceeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeec
Q psy7039 276 TSTTASLNIKNSVRKDSGIYKIEAKND--YGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGA 353 (516)
Q Consensus 276 ~~~~~~l~i~~l~~~d~g~y~c~a~n~--~g~~~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y 353 (516)
......|.|.++..+|+|.|+|.|.|. .|.....+.|.|...
T Consensus 251 ~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~g~~~~~~~l~V~~v------------------------------------ 294 (363)
T 1wio_A 251 KKLPLHLTLPQALPQYAGSGNLTLALEAKTGKLHQEVNLVVMRA------------------------------------ 294 (363)
T ss_dssp SSSSCEEEESSBCGGGCEEEEEEECBTTTTCCEEEEEEEEEEEE------------------------------------
T ss_pred cCCceEEEEccCCcCcCcEEEEEEEEhhhcCeEEEEEeEEEEEe------------------------------------
Confidence 112448999999999999999999999 888777777777521
Q ss_pred cccccccccccEEEEcCCeEEEEEEEeeecCCc--eEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEE
Q psy7039 354 PKITSDLSIRDMTVLAGEEFTITVPFSGRPKPT--PIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQL 431 (516)
Q Consensus 354 ~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~--i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a 431 (516)
.|+.+.|.|.+.|.|.|. +.|++++..+.. ...|.|.++.. .|+|.|+|.|
T Consensus 295 ---------------~g~~~~l~C~~~g~p~p~~~i~W~~~~~~~~~-----------~~~l~i~~v~~-~d~G~Y~C~a 347 (363)
T 1wio_A 295 ---------------TQLQKNLTCEVWGPTSPKLMLSLKLENKEAKV-----------SKREKAVWVLN-PEAGMWQCLL 347 (363)
T ss_dssp ---------------CCCSSSEEEEEESSCCTTCCEEEECSSSSCSE-----------EESSSEEEESS-CCSEEEEEEE
T ss_pred ---------------cCCCeeEEEEEccccCCCccEEEEeCCCceee-----------eeeeeeeeecc-ccceeEEEEE
Confidence 256688999999999987 999999976642 13467788899 9999999999
Q ss_pred EcCCCceeEEEEEEEe
Q psy7039 432 VNTVGSDSASCKVYVV 447 (516)
Q Consensus 432 ~n~~G~~s~s~~l~v~ 447 (516)
.|. |....+..+.|.
T Consensus 348 ~~~-~~~~~~~~~~V~ 362 (363)
T 1wio_A 348 SDS-GQVLLESNIKVL 362 (363)
T ss_dssp CSS-SSCCEEEEEEEC
T ss_pred ecC-CeEEEecceEec
Confidence 965 555556666653
|
| >2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A | Back alignment and structure |
|---|
Probab=99.93 E-value=9.7e-23 Score=203.64 Aligned_cols=311 Identities=15% Similarity=0.144 Sum_probs=206.8
Q ss_pred CCcEEEeCCCcCCCeEEEEEEEecCCCCCCCCCCCcceEeccCCCCCccccCcccceEEecCCeEEEEEeeeeccccccC
Q psy7039 68 GETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKS 147 (516)
Q Consensus 68 ~~~~~~i~~l~~~~~y~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~ 147 (516)
....|.|.+++..|.|.|+|.|.|..|... ....+.+. .+|.+. ..+..+.+.+|+.+.|.|.+.
T Consensus 61 ~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~---~~~~l~V~---~~P~~~-~~~~~~~~~~g~~~~l~C~~~-------- 125 (389)
T 2jll_A 61 GSSSLHIKDVKLSDSGRYDCEAASRIGGHQ---KSMYLDIE---YAPKFI-SNQTIYYSWEGNPINISCDVK-------- 125 (389)
T ss_dssp SEEEEEEESCCGGGCEEEEEEEECSSCEEE---EEEEEEEE---EEEEEC-CSCCEEEECTTCCEEEEECEE--------
T ss_pred CcceEEEcccChhhCEEEEEEEEeCCCCcc---eEEEEEEE---eCCEEe-cCcceEEeccCCEEEEEEEEE--------
Confidence 457899999999999999999999887642 12223322 356655 444556788999999999999
Q ss_pred ccccccccccCccceeecCcCceeeEEeeCCeeeccCC--ceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEE
Q psy7039 148 PLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGG--RADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATAS 225 (516)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~--~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~ 225 (516)
+.|.+.+.|++++..+.... ++.+...+....|.|.+++..|+|.|+|.+.|..|.....
T Consensus 126 ------------------g~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~ 187 (389)
T 2jll_A 126 ------------------SNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATNHIGTRFQE 187 (389)
T ss_dssp ------------------EESCCEEEEEETTEESSCTTCTTEEEEECSSCEEEEECCCSTTSSEEEEEEEEETTEEEEEE
T ss_pred ------------------ecCCCeEEEEECCccCCcccCceEEEeccCCEEEEEECCCChhhCEEEEEEEEcCCCcEEEE
Confidence 99999999999999887653 6666667777899999999999999999999999987665
Q ss_pred EEeeceee-------eeccccCCceEEEEEEEEcc-CCCCCc--eeccccccc-ceEEEEEecceeeEEEccCCCCCceE
Q psy7039 226 AHVTGTEF-------TDNNVHEGKAYEYRVSAVNA-AGTEKP--KISLDALIG-KRIKEFVTSTTASLNIKNSVRKDSGI 294 (516)
Q Consensus 226 ~~~~~~~~-------~~~~l~~g~~~~~~~~~~~~-~g~p~p--~i~W~~~~~-~~~~~~~~~~~~~l~i~~l~~~d~g~ 294 (516)
..+..... .... ..+....+.|..... .|.+.. .+.|..... .............+.|.++.+.+.|.
T Consensus 188 ~~l~v~~~P~~P~~~~~~~-~~~~~~~l~w~~p~~~~g~pi~~y~v~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~ 266 (389)
T 2jll_A 188 YILALADVPSSPYGVKIIE-LSQTTAKVSFNKPDSHGGVPIHHYQVDVKEVASEIWKIVRSHGVQTMVVLNNLEPNTTYE 266 (389)
T ss_dssp EEEEECCCCCCCEEEEEEE-ECSSCEEEEEECCSCCTTSCEEEEEEEEEETTCSCCEEEECSTTCSEEEECSCCTTCEEE
T ss_pred EEEEecCCCCCCcceEEee-ccCCEEEEEEeCCCCCCCcceEEEEEEEEECCCcccEEeeccCCcceEEECCccCCCEEE
Confidence 54332111 1111 123455566653211 222322 345544222 22222333455789999999999999
Q ss_pred EEEEEEecCCCcceeEEEEEecCCC-CCCCC-ceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCe
Q psy7039 295 YKIEAKNDYGIDMADIEVVVVSKPG-PPTGP-IDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEE 372 (516)
Q Consensus 295 y~c~a~n~~g~~~~~~~l~v~~~p~-~p~~p-~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~ 372 (516)
|+|.|.|..|....+..+.+...+. +|..| +.....+.+++.|+|.+|.+ ++.+|.+|.
T Consensus 267 ~~v~A~N~~G~~~~s~~~~~~t~~~~~p~~p~~~~~~~~~~~v~l~W~~p~~-~~~~i~~Y~------------------ 327 (389)
T 2jll_A 267 IRVAAVNGKGQGDYSKIEIFQTLPVREPSPPSIHGQPSSGKSFKLSITKQDD-GGAPILEYI------------------ 327 (389)
T ss_dssp EEEEEEESSCBCCCCCCEEEECCCCCCCCCCCEEEEEETTTEEEEEECCCCC-CSSCCCEEE------------------
T ss_pred EEEEEEcCCccCCCCcceEEEecCCCCCCCCccccccCcCCEEEEEEECCCC-CCCcccEEE------------------
Confidence 9999999999876554455544332 23222 55566799999999998764 566777772
Q ss_pred EEEEEEEeeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEEEEecCC
Q psy7039 373 FTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKP 450 (516)
Q Consensus 373 ~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~v~~~p 450 (516)
|.|...+.. ..............+.|.+|.+ ...|.|++.|.|..|.+..+. +.+.+.+
T Consensus 328 --------------v~~~~~~~~---~~~~~~~~~~~~~~~~i~~L~~-~t~Y~~~V~A~n~~G~s~~s~-~~~~T~~ 386 (389)
T 2jll_A 328 --------------VKYRSKDKE---DQWLEKKVQGNKDHIILEHLQW-TMGYEVQITAANRLGYSEPTV-YEFSMPP 386 (389)
T ss_dssp --------------EEEEC--------CCBCCEECTTCCEEEECSCCT-TCEEEEEEEEEC-CCBCCCEE-EEEECCC
T ss_pred --------------EEEEeCCCC---cceeEeeccCCcceEEeCCcCC-CCEEEEEEEEEcCCcCCCcee-eEecCCC
Confidence 111111100 0000111223445688999999 999999999999999865553 3555543
|
| >2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.92 E-value=3.4e-24 Score=205.30 Aligned_cols=258 Identities=18% Similarity=0.171 Sum_probs=179.2
Q ss_pred CCCccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEee
Q psy7039 112 LAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQT 191 (516)
Q Consensus 112 ~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~ 191 (516)
.+|.|. ..+..+.+.+|+.+.|.|.+. + .+.|++++..+ .....
T Consensus 11 ~~P~i~-~~~~~~~v~~G~~v~l~C~~~--------------------------~----~i~W~~~~~~~-----~~~~~ 54 (290)
T 2o26_X 11 SPPSIH-PAQSELIVEAGDTLSLTCIDP--------------------------D----FVRWTFKTYFN-----EMVEN 54 (290)
T ss_dssp -CCEES-SCSSEEEEETTSCEEEEEECT--------------------------T----EEEEEEECSSS-----CEEEE
T ss_pred CCCEEe-CCCCeEEEcCCCcEEEEECCC--------------------------C----cEEEecCCcce-----eeecC
Confidence 467777 567788999999999999998 6 89999988766 11111
Q ss_pred cCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEEeecee-------eeeccccCCceEEEEEEEEccCCCCC-ceecc
Q psy7039 192 TKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVTGTE-------FTDNNVHEGKAYEYRVSAVNAAGTEK-PKISL 263 (516)
Q Consensus 192 ~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~~~~~-------~~~~~l~~g~~~~~~~~~~~~~g~p~-p~i~W 263 (516)
. ...|.|.+++.+|+|.|+|.+.| |. .....+.+.. .....+.+|+.+.+.|.+ .| |. +.+.|
T Consensus 55 ~--~~~L~i~~~~~~d~G~Y~C~~~n--g~-~~~~~l~V~~~~~~~~~~~~~~~~~g~~v~l~C~~---~~-p~~~~v~W 125 (290)
T 2o26_X 55 K--KNEWIQEKAEATRTGTYTCSNSN--GL-TSSIYVFVRDPAKLFLVGLPLFGKEDSDALVRCPL---TD-PQVSQYSL 125 (290)
T ss_dssp C--SSEEEETTCCGGGCEEEEEEESS--SC-EEEEEEEEECSSCCBCCCCCEEEETTSCEEECCCB---SC-CSCEEEEE
T ss_pred C--CceEEEeccCHHhCeEEEEEeeC--Cc-cEEEEEEEeCCCcccccccceEEecCCeEEEeCcC---CC-CCCceEEE
Confidence 2 27999999999999999999998 43 3333222211 122345679999999987 55 66 89999
Q ss_pred cccccce----EEEEEecceeeEEEccCCCCCce-EEEEEEEecCCCc-ceeEEEEEecCCCCCCCCceeeeccCCeeEE
Q psy7039 264 DALIGKR----IKEFVTSTTASLNIKNSVRKDSG-IYKIEAKNDYGID-MADIEVVVVSKPGPPTGPIDYTTVTPESVSM 337 (516)
Q Consensus 264 ~~~~~~~----~~~~~~~~~~~l~i~~l~~~d~g-~y~c~a~n~~g~~-~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l 337 (516)
....+.. ..... .....|.|.++..+|+| .|+|.|.|..+.. +..+.+.|...+..+.. +.
T Consensus 126 ~~~~g~~l~~~~~~~~-~~~~~L~i~~v~~~d~G~~Y~C~a~n~~~~~~s~~~~l~V~~~~~~~P~-i~----------- 192 (290)
T 2o26_X 126 IECDGKSLPTDLTFVP-NPKAGITIKNVKRAYHRLCVRCAAQRDGTWLHSDKFTLKVREAIKAIPV-VS----------- 192 (290)
T ss_dssp EETTSCCCCTTCEEEE-ETTTEEEEESCCGGGTTCEEEEEEEETTEEEECCCEEEEEECCCCSCCE-EE-----------
T ss_pred EeCCCcCCCCCCceee-CCCCCEEEecccHHHCCCEEEEEEEECCceEEeEEEEEEEEeCCCCCCc-cc-----------
Confidence 3211111 11111 23358999999999999 9999999985553 33567777643221110 00
Q ss_pred EecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeeecCCc-eEEEECCee----cCCCCceEEE---EcCC
Q psy7039 338 SWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPT-PIWTVNGDE----VSPDGRIKFE---TSEN 409 (516)
Q Consensus 338 ~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~-i~W~~~~~~----l~~~~~~~~~---~~~~ 409 (516)
..+....+..|+.+.|.|.+.|.|.+. +.|++++.. +......... ....
T Consensus 193 ----------------------~~~~~~~v~~G~~v~l~C~~~g~p~p~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (290)
T 2o26_X 193 ----------------------VPETSHLLKKGDTFTVVCTIKDVSTSVNSMWLKMNPQPQHIAQVKHNSWHRGDFNYER 250 (290)
T ss_dssp ----------------------CSCSBCCCCTTCCEEEEEEEEESSTTCEEEEEEESSSEEECCCEECCEEEEETTEEEE
T ss_pred ----------------------cCCCcceEecCCcEEEEEEEecCCcceeEEEecCCCCCccceeecccccccCceeeEE
Confidence 112334678999999999999999996 999999876 2322222222 1123
Q ss_pred eEEEEEcCceecCCceEEEEEEEcCCCceeEEEEEEEecCC
Q psy7039 410 QTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKP 450 (516)
Q Consensus 410 ~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~v~~~p 450 (516)
...|.|.++.. .|+|.|+|.|.|..|..+.++.|.|..+|
T Consensus 251 ~~~L~I~~v~~-~d~G~Y~C~a~N~~g~~~~~~~l~V~~~P 290 (290)
T 2o26_X 251 QETLTISSARV-DDSGVFMCYANNTFGSANVTTTLKVVEKG 290 (290)
T ss_dssp EEEEEESSCCS-SSCEEEEEEEECSSCEEEEEEEECC----
T ss_pred EEEEEEcCCCc-ccCeEEEEEEeCCCCcEEEEEEEEEEeCC
Confidence 46899999999 99999999999999999888888887654
|
| >3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.7e-24 Score=217.49 Aligned_cols=304 Identities=19% Similarity=0.247 Sum_probs=206.7
Q ss_pred cCCCCCccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCceE
Q psy7039 109 PKNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRAD 188 (516)
Q Consensus 109 ~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~ 188 (516)
....+|.|....+..+.+.+|+.+.|.|.+. |.|.+.+.|++++..+......+
T Consensus 12 ~~~~~P~i~~~~~~~~~v~~G~~v~l~C~~~--------------------------g~p~~~v~W~k~g~~l~~~~~~~ 65 (404)
T 3p3y_A 12 ELTQPPTITKQSAKDHIVDPRDNILIECEAK--------------------------GNPAPSFHWTRNSRFFNIAKDPR 65 (404)
T ss_dssp -CCCCCCEEEECCTTCEECSSSCCCCCEEEC--------------------------CSSCCEEEEEETTEECCGGGCSS
T ss_pred hccCCCcccccCCccEEEcCCCCEEEEEEec--------------------------CCCCCeEEEEECCEEeeeecCCc
Confidence 3346787775567788999999999999999 99999999999998876443333
Q ss_pred EeecCCeeEEEec----cCCCCCCeeEEEEEEcCCCceE-EEEEeeceee--------eeccccCCceEEEEEEEEccCC
Q psy7039 189 VQTTKSETVLDIP----FCSRSDTGHYSLTLENNLGTAT-ASAHVTGTEF--------TDNNVHEGKAYEYRVSAVNAAG 255 (516)
Q Consensus 189 ~~~~~~~~~l~i~----~~~~~d~g~Y~c~~~~~~g~~~-~~~~~~~~~~--------~~~~l~~g~~~~~~~~~~~~~g 255 (516)
+........|.|. +++.+|+|.|+|.+.|..|... ....+.+... ....+.+|+.+.+.|.+ ..|
T Consensus 66 ~~~~~~~~~l~i~~~~~~~~~~D~G~Y~C~a~n~~g~~~s~~~~l~V~~~p~~~~~~~~~~~v~~G~~v~l~C~~--~~~ 143 (404)
T 3p3y_A 66 VSMRRRSGTLVIDFRSGGRPEEYEGEYQCFARNKFGTALSNRIRLQVSKSPLWPKENLDPVVVQEGAPLTLQCNP--PPG 143 (404)
T ss_dssp CBCCSSSCCCBCCCTTTCCTTSSCEEEEEEEECSSCEEEEEEEEEEECCCCCCCCCCCCCEEEETTSCEEECCCC--CCC
T ss_pred ceEecCCceEEEEeccCCCCccCCEEEEEEEEcCCCeEeeeeEEEEEeccCccccCCCCCeEEccCCcEEEEeCC--CCC
Confidence 3323344456554 8889999999999999888764 2333222111 12356789999999986 367
Q ss_pred CCCceecccccccce---EEEEEecceeeEEEccCCCCC-ceEEEEEEEecCCCcc---eeEEEEEecCCCCCCCCceee
Q psy7039 256 TEKPKISLDALIGKR---IKEFVTSTTASLNIKNSVRKD-SGIYKIEAKNDYGIDM---ADIEVVVVSKPGPPTGPIDYT 328 (516)
Q Consensus 256 ~p~p~i~W~~~~~~~---~~~~~~~~~~~l~i~~l~~~d-~g~y~c~a~n~~g~~~---~~~~l~v~~~p~~p~~p~~~~ 328 (516)
.|.+.+.|.+..... .........+.|.|.++...| .|.|+|.|.|..|... ....+.+...+.....+..+
T Consensus 144 ~p~~~v~W~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~~G~Y~C~a~n~~~~~~~~~~~~~l~v~~~~~~~~~~p~~- 222 (404)
T 3p3y_A 144 LPSPVIFWMSSSMEPITQDKRVSQGHNGDLYFSNVMLQDMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSF- 222 (404)
T ss_dssp SSCCEEEEECTTSCBCCCCSSEEECTTSCEEESSCCSGGGSSCBEEEEECTTTCCEEECCCBCEEEECCSCCCCCCCCB-
T ss_pred CCCCeEEEeCCCccccCCCCcEEEcCCCcEEEEeeeeccCCcceEEEEEeccccceeccCceeEEEeccCCccccCCcc-
Confidence 788999996532111 011112456689999999999 5999999999877642 23455555433221110000
Q ss_pred eccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEEEEcC
Q psy7039 329 TVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSE 408 (516)
Q Consensus 329 ~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~ 408 (516)
..| ........+..|+.+.|.|.+.|.|.+.+.|++++..+..... ... .
T Consensus 223 -----------~~~----------------~~~~~~~~~~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~-~~~--~ 272 (404)
T 3p3y_A 223 -----------MYP----------------QGTASSQMVLRGMDLLLECIASGVPTPDIAWYKKGGDLPSDKA-KFE--N 272 (404)
T ss_dssp -----------SSS----------------CSSEEEEEEETTSCEEEECCBCCSSCCEEEEEETTBCCCTTTE-EEE--G
T ss_pred -----------ccc----------------cCCCCCceEecCCCEEEEEEECCCCCCcEEEEECCEECCCCcc-ccc--c
Confidence 000 0122456788999999999999999999999999988754433 222 2
Q ss_pred CeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEEEEecCCCCCCCCcccccccCCeEEEEee
Q psy7039 409 NQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQGPLDVSDITPESCSLSWK 472 (516)
Q Consensus 409 ~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~v~~~p~~P~~~l~~~~~~~~~~~l~W~ 472 (516)
....|.|.++.. .|.|.|+|.|.|..|..+..+.|.|..+|.....+.......++.+.|.+.
T Consensus 273 ~~~~L~i~~~~~-~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~v~~g~~~~l~C~ 335 (404)
T 3p3y_A 273 FNKALRITNVSE-EDSGEYFCLASNKMGSIRHTISVRVKAAPYWLDEPKNLILAPGEDGRLVCR 335 (404)
T ss_dssp GGTEEEESSCCG-GGCEEEEEEEECSSCEEEEEEEEEEEEEEEEEECCCCEEECTTCCEEEECE
T ss_pred cCceEEEccCCH-hHCEEEEEEEEeCCCcEEEEEEEEEeCCCeeeccCCcceeecCCcEEEEEE
Confidence 234799999999 999999999999999988889998887653210111122234556666664
|
| >1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.92 E-value=5e-24 Score=217.44 Aligned_cols=292 Identities=11% Similarity=0.036 Sum_probs=189.4
Q ss_pred cEEEeCCCcCCCeEEEEEEEecCCCCCCCCCCCcceEeccCCCCCccccCcccceEEecCCeEEEEEeeeeccccccCcc
Q psy7039 70 TSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPL 149 (516)
Q Consensus 70 ~~~~i~~l~~~~~y~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~ 149 (516)
..|.|.+++. |.+ |+|.|.+..+... . ...+.+. .+|.+....+....+.+|+.+.|.|.+.
T Consensus 50 ~~l~i~~v~~-d~g-Y~C~a~~~~~~~~-~--~~~l~V~---~~P~~~~~~~~~~~v~~G~~v~L~C~~~---------- 111 (450)
T 1z7z_I 50 KVYELSNVQE-DSQ-PMCYSNCPDGQST-A--KTFLTVY---WTPERVELAPLPSWQPVGKNLTLRCQVE---------- 111 (450)
T ss_dssp EEEEEEEECS-CBC-CEEEEEETTEEEE-E--ECEEEEE---BCCSEEEECCCCSEECTTSEEEEEEEEE----------
T ss_pred eEEEEEeccc-CCe-eEEEEeCCCCcce-e--EEEEEEE---eCCCcceecCCCceEeeCCeEEEEEEec----------
Confidence 4788999988 888 9999975433221 1 1222222 2454443455667899999999999999
Q ss_pred ccccccccCccceeecCcCce---eeEEeeCCeeeccCCceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCceEE--
Q psy7039 150 RALGVRANSTKGWVKLSEPFL---NHGWSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATA-- 224 (516)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~p~~---~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~-- 224 (516)
+.|.+ .+.|++++..+...... .......|.|.++..+|+|.|+|.+.|..|....
T Consensus 112 ----------------g~~~~~~~~v~W~k~g~~l~~~~~~---~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~ 172 (450)
T 1z7z_I 112 ----------------GGAPRANLTVVLLRGEKELKREPAV---GEPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLEL 172 (450)
T ss_dssp ----------------CCBCGGGEEEEEEETTEEEEEEECC---TTTEEEEEEEECCSSCSSCEEEEEEEEECGGGTSCE
T ss_pred ----------------CCCCCcCcEEEEeeCCEEeeccccc---ccccceEEEEEeeccccCceEEEEEEcccCCCCceE
Confidence 87777 89999999888643211 1334569999999999999999999998664221
Q ss_pred --------EEEeec---eeeee---ccccCCceEEEEEEEEccCCC-C--Cceecccccccc-eEEEEEecceeeEE-Ec
Q psy7039 225 --------SAHVTG---TEFTD---NNVHEGKAYEYRVSAVNAAGT-E--KPKISLDALIGK-RIKEFVTSTTASLN-IK 285 (516)
Q Consensus 225 --------~~~~~~---~~~~~---~~l~~g~~~~~~~~~~~~~g~-p--~p~i~W~~~~~~-~~~~~~~~~~~~l~-i~ 285 (516)
.+.+.. ..... ..+.+|+.+.+.|.+ .|. | .+.+.|.+.... ...+........+. ..
T Consensus 173 ~~~~s~~~~l~v~~~~~~~p~~~~~~~v~~G~~v~l~C~~---~g~~P~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~ 249 (450)
T 1z7z_I 173 FENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSL---DGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSAKASV 249 (450)
T ss_dssp EEEECCCEECEECCCCSSCCEEECCSEEETTSEEEEEEEE---ESCTTGGGCEEEEEETTEECCCEEEEETTEEEEEEEE
T ss_pred EeeccCccceeeeccCCCCCEecCceeEEeCCcEEEEEEe---eCCCCCCceEEEEeCCCEeCCceEEecCCceeEEEEE
Confidence 111110 01112 567789999999998 666 6 788999652211 01222333322222 22
Q ss_pred cCCCCCce--EEEEEEEecCCCcceeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccccccc
Q psy7039 286 NSVRKDSG--IYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIR 363 (516)
Q Consensus 286 ~l~~~d~g--~y~c~a~n~~g~~~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~ 363 (516)
++..+|+| .|+|.|.|..|.......|.|...+.+. + ...
T Consensus 250 ~v~~~d~G~~~Y~C~a~n~~g~~~~~~~l~V~~~~~p~---i-----------------------------------~~~ 291 (450)
T 1z7z_I 250 SVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAPN---V-----------------------------------ILT 291 (450)
T ss_dssp ECCGGGCEEEEEEEEEEETTEEEEEEEEEEEECCCCCE---E-----------------------------------EES
T ss_pred EeEhhhCCcEEEEEEEccCCccEEEEEEEEEecCCCCe---E-----------------------------------ecC
Confidence 77899999 9999999999988888888887755421 0 012
Q ss_pred cEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCC-c---ee
Q psy7039 364 DMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVG-S---DS 439 (516)
Q Consensus 364 ~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G-~---~s 439 (516)
...+.+|+.+.|.|.+. |.+.+.| +|..+.. .+....|.|..+.. +|.|.|+|.|.|..| . ..
T Consensus 292 ~~~v~~G~~v~l~C~~~--p~p~i~W--~g~~~~~--------~~~~~~L~i~~~~~-~d~G~Y~C~a~n~~~g~~~~~~ 358 (450)
T 1z7z_I 292 KPEVSEGTEVTVKCEAH--PRAKVTL--NGVPAQP--------LGPRAQLLLKATPE-DNGRSFSCSATLEVAGQLIHKN 358 (450)
T ss_dssp CSEEETTCEEEEEEEC----------------------------CCCCCEEEECCGG-GTTCEEEEEEEEEETTEEEEEE
T ss_pred CeeEeCCCcEEEEEecC--CCCEeEE--CCEEcCC--------CCceEEEEEecCcc-cCCceEEEEEEcCCCCcccccc
Confidence 23788999999999998 8889999 6655521 12223699999999 999999999997665 3 34
Q ss_pred EEEEEEEecCCCC
Q psy7039 440 ASCKVYVVDKPSP 452 (516)
Q Consensus 440 ~s~~l~v~~~p~~ 452 (516)
.++.|.|..+|..
T Consensus 359 ~~~~l~V~~~P~~ 371 (450)
T 1z7z_I 359 QTRELRVLYGPRL 371 (450)
T ss_dssp EEEECEEEEEEEC
T ss_pred eeEEEEEecCCce
Confidence 6678888766543
|
| >1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY acidic protein fold, fibronectin type III fold, hormone- growth factor complex; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.2e-21 Score=209.67 Aligned_cols=419 Identities=15% Similarity=0.159 Sum_probs=234.8
Q ss_pred CCCCCCC-cceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeC-C--------CCeEEeEEeecCCcEEEeCCCcCC
Q psy7039 11 FDEPGKP-TDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDK-T--------GNWEKAVVVPAGETSCTVPGLIEG 80 (516)
Q Consensus 11 ~~~p~~p-~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~-~--------~~~~~~~~~~~~~~~~~i~~l~~~ 80 (516)
.++|.+| .+|.+..+++++|.|+|.+|..+++.++. |.|+|+.. + ..|..+.. ...+.++|.+|.++
T Consensus 157 ~~~P~~P~~~l~v~~~~~~sv~l~W~pp~~~~~~~i~-Y~V~~r~~~g~~~~~~~~~~w~~v~~--~~~~~~~i~~L~P~ 233 (680)
T 1zlg_A 157 KGVPLKPRKELRFTELQSGQLEVKWSSKFNISIEPVI-YVVQRRWNYGIHPSEDDATHWQTVAQ--TTDERVQLTDIRPS 233 (680)
T ss_pred ecccccccccceEEeccCceEEEEEeCCCCCCCCCEE-EEEEEEECCCCCcCccccCceEEEEe--cCCCeEEeCCCCCC
Confidence 4679999 89999999999999999998655667788 99999875 2 36766544 35778999999999
Q ss_pred CeEEEEEEEecCCCCCCCCCCCcceEeccCCCCCccccCcccceEEecC--C---eEEEEEeeeeccccccCcccccccc
Q psy7039 81 ETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAPRIDRSTLNDVKIKAG--Q---SFSFDVKEFRELSYTKSPLRALGVR 155 (516)
Q Consensus 81 ~~y~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g--~---~~~l~C~~~~~~~~~~~~~~~~~~~ 155 (516)
+.|.|+|.|.|..|...++.....+.......+| ..+..+.+... . ...+...|. +|..+.+.-
T Consensus 234 t~Y~frV~A~n~~G~~~~ss~s~~~~t~~~~~pp----~~P~~l~~~~~~~~~~g~~sv~l~W~-------pP~~~~g~i 302 (680)
T 1zlg_A 234 RWYQFRVAAVNVHGTRGFTAPSKHFRSSKDPSAP----PAPANLRLANSTVNSDGSVTVTIVWD-------LPEEPDIPV 302 (680)
T ss_pred CEEEEEEEEEeCCCCCCCCCCccceEcCCCCCCC----CCCCceEeeeeeecCCCceEEEEEec-------CCCCCCCce
Confidence 9999999999998844333334333332211223 33444444322 1 124555554 122111222
Q ss_pred ccCccceeecCcCceeeEEeeC--Cee-eccCCceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEE-----EE
Q psy7039 156 ANSTKGWVKLSEPFLNHGWSIN--GQV-CQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATAS-----AH 227 (516)
Q Consensus 156 ~~~~~~~~~~~~p~~~i~W~~~--~~~-~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~-----~~ 227 (516)
.++ .|.|... +.. ............+....+.|.++.....+.++..+.|..|....+ +.
T Consensus 303 ~~Y------------~V~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~~v~ 370 (680)
T 1zlg_A 303 HHY------------KVFWSWMVSSKSLVPTKKKRRKTTDGFQNSVILEKLQPDCDYVVELQAITYWGQTRLKSAKVSLH 370 (680)
T ss_pred eEE------------EEEEEecccccccCCccceEEEEEcCCeeEEEeCCCCCCCEEEEEEEEEECCCcCCCCCCceeEE
Confidence 222 2333311 000 000000111123344678999999999999999999887754321 11
Q ss_pred eeceee--eecccc----CCceEEE-----------EEEEE-ccCCCCCceecccccccc---eEEE-------------
Q psy7039 228 VTGTEF--TDNNVH----EGKAYEY-----------RVSAV-NAAGTEKPKISLDALIGK---RIKE------------- 273 (516)
Q Consensus 228 ~~~~~~--~~~~l~----~g~~~~~-----------~~~~~-~~~g~p~p~i~W~~~~~~---~~~~------------- 273 (516)
+..... ....+. ....+.+ ..... ...+.....+.|...... .+.+
T Consensus 371 ~~T~~~~P~p~~l~~~~~s~tsi~lp~~~~~~~~~l~W~~P~~~~~~~~y~v~w~~~~~~~v~~Y~V~w~~~~~~~~~~~ 450 (680)
T 1zlg_A 371 FTSTHATNNKEQLVKTRKGGIQTQLPFQRRRPTRPLEVGAPFYQDGQLQVKVYWKKTEDPTVNRYHVRWFPEACAHNRTT 450 (680)
T ss_pred EECCCCCCCccccccccccCccccccccccCCCccccccCCcccCCcceEEEEEeCCCCCccceEEEEEeeeecccCCCC
Confidence 110000 000000 0000000 00000 000111122333221110 0111
Q ss_pred -----EEecceeeEEEccCCCCCceEEEEEEEecCCCcceeE------E-----------EEEec--CC------CCCCC
Q psy7039 274 -----FVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADI------E-----------VVVVS--KP------GPPTG 323 (516)
Q Consensus 274 -----~~~~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~~~------~-----------l~v~~--~p------~~p~~ 323 (516)
........+.|.+|.+...|.+++.|.|..|...... . +.... .| .+|..
T Consensus 451 ~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~A~n~~G~s~~~~~~f~T~~~~~~~~~~~~~v~~~~~~~P~~~~v~~~P~~ 530 (680)
T 1zlg_A 451 GSEASSGMTHENYIILQDLSFSCKYKVTVQPIRPKSHSKAEAVFFTTPPCSALKGKSHKPIGCLGEAGHVLSKVLAKPEN 530 (680)
T ss_pred cceeeeeeccCceEEecCCCCCCeEEEEEEEecCCCCCCccccceeCCCccccccCCccccccCCCCccccccccCCccc
Confidence 1133456788999999999999999999988432111 0 00000 01 11111
Q ss_pred ---CceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeeecCCceEEEECCeec--CC
Q psy7039 324 ---PIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEV--SP 398 (516)
Q Consensus 324 ---p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l--~~ 398 (516)
.+.+..++.+ +.|+|++|..+.+..|.+|. |.|......- ..
T Consensus 531 l~~~v~v~~~~~t-i~lsW~pP~~~~ng~I~gY~--------------------------------V~y~~~~~~~~~~~ 577 (680)
T 1zlg_A 531 LSASFIVQDVNIT-GHFSWKMAKANLYQPMTGFQ--------------------------------VTWAEVTTESRQNS 577 (680)
T ss_pred cceeEEEeccCce-EEEEecCCCCCCCCCceeEE--------------------------------EEEEEccCCCcccc
Confidence 0344445555 99999999865455888883 1121110000 00
Q ss_pred CCceEE----EEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEEEEecC---CCCCCCCcccccccCCeEEEEe
Q psy7039 399 DGRIKF----ETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDK---PSPPQGPLDVSDITPESCSLSW 471 (516)
Q Consensus 399 ~~~~~~----~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~v~~~---p~~P~~~l~~~~~~~~~~~l~W 471 (516)
.....+ ........++|.+|.+ ...|.|++.|.|..|.+.. ..+.+.+. |.+| ..+.+...+ .|+|
T Consensus 578 ~~~~~~~~~~~~~~~~~~~~l~~L~p-~t~Y~~~V~A~n~~G~G~~-~~~~~~T~~~~P~~P-~~l~v~~~~----~l~W 650 (680)
T 1zlg_A 578 LPNSIISQSQILPSDHYVLTVPNLRP-STLYRLEVQVLTPGGEGPA-TIKTFRTPELPPSSA-HRSHLKHRH----PHHY 650 (680)
T ss_pred ccceeeecccccCCcccEEEecCCCC-CceEEEEEEEEcCCCcCCC-cceEEECCCCCCCCC-CCCeEEecc----ceeE
Confidence 000000 0112346799999999 9999999999999998665 44555544 3444 445665433 8999
Q ss_pred eCCCCCCCCCcceEEEEEEecCCC
Q psy7039 472 KPPLDDGGSPITNYVVEKYESATG 495 (516)
Q Consensus 472 ~~p~~~~~~~i~~Y~v~~~~~~~~ 495 (516)
++|..++|.+|.+|+|+|+-...+
T Consensus 651 ~pP~~~~G~~I~~~~~~~~~~~~~ 674 (680)
T 1zlg_A 651 KPSPERYGKPIPNPLLGLDSTRTG 674 (680)
T ss_pred CCCCCCCCCccceeeEEEeecccc
Confidence 999999999999999999877554
|
| >3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.9e-23 Score=196.75 Aligned_cols=246 Identities=16% Similarity=0.141 Sum_probs=181.6
Q ss_pred CccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCce-eeEEeeCCeeeccCCceEEeec
Q psy7039 114 PRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFL-NHGWSINGQVCQIGGRADVQTT 192 (516)
Q Consensus 114 p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~i~W~~~~~~~~~~~~~~~~~~ 192 (516)
|.|. ..+..+.+.+|+.+.|.|.+. +.|.+ .+.|++++..+...
T Consensus 2 P~i~-~~p~~~~v~~G~~v~l~C~~~--------------------------~~~~~~~~~W~~~g~~~~~~-------- 46 (262)
T 3rjd_A 2 AVIT-LQPPWVSVFQEETVTLHCEVL--------------------------HLPGSSSTQWFLNGTATQTS-------- 46 (262)
T ss_dssp CEEE-ESSCCSEEETTCCEEEEEECS--------------------------SCCCTTCEEEEETTEECSCC--------
T ss_pred CeEe-cCCCcEEeeCCCeEEEEEECC--------------------------CCCCCceEEEEECCEEeecc--------
Confidence 4444 445567889999999999999 88777 99999999887532
Q ss_pred CCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEEeeceee----eeccccCCceEEEEEEEEccCCCCCceeccccccc
Q psy7039 193 KSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVTGTEF----TDNNVHEGKAYEYRVSAVNAAGTEKPKISLDALIG 268 (516)
Q Consensus 193 ~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~~~~~~----~~~~l~~g~~~~~~~~~~~~~g~p~p~i~W~~~~~ 268 (516)
...|.|.+++.+|+|.|+|.+.+..+.....+.+....+ ....+.+|+.+.+.|.+. .+.|.+.+.|.+..
T Consensus 47 --~~~l~i~~~~~~d~G~Y~C~~~~~~~s~~~~l~v~~~~~~~~~~~~~~~~g~~v~l~C~~~--~~~p~~~v~W~~~g- 121 (262)
T 3rjd_A 47 --TPSYRITSASVNDSGEYRCQRGLSGRSDPIQLEIHRGWLLLQVSSRVFTEGEPLALRCHAW--KDKLVYNVLYYRNG- 121 (262)
T ss_dssp --SSEEEESSCCGGGCEEEEEEESSSCCCCCEEEEEECSSEEEEESCSEEETTSCEEEEEEEG--GGCCCEEEEEEETT-
T ss_pred --CCeEEEecCCcccCeEEEEEEecCCccccEEEEEeccceEecCCCeEEecCCeEEEEEEcc--CCCCCceEEEEECC-
Confidence 457999999999999999999987776655554432211 234466899999999873 56788899997622
Q ss_pred ceEEEEEecceeeEEEccCCCCCceEEEEEEEecCCCcceeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCC
Q psy7039 269 KRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGT 348 (516)
Q Consensus 269 ~~~~~~~~~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~ 348 (516)
... ........|.|.++..+|.|.|+|.|.|..+..+..+.|.|...+.+|.. .
T Consensus 122 ~~~--~~~~~~~~l~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~l~V~~~~~~p~~--~---------------------- 175 (262)
T 3rjd_A 122 KAF--KFFHWNSNLTILKTNISHNGTYHCSGMGKHRYTSAGISVTVKELFPAPVL--N---------------------- 175 (262)
T ss_dssp EEE--EEEEECCCEEESSCCGGGCEEEEEEEESSSEEEEECEEEEEECSSCCCEE--E----------------------
T ss_pred ccc--cccCCCCeEEEEECChhhCEEEEEEEeCCCCccccceEEEeccCCCCCeE--e----------------------
Confidence 222 22234578999999999999999999999887777788888765433210 0
Q ss_pred ceeeccccccccccccEEEEcCCeEEEEEEEeeecC-Cc----eEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCC
Q psy7039 349 PITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPK-PT----PIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATD 423 (516)
Q Consensus 349 ~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~-~~----i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~ 423 (516)
......+..|+.+.|.|.+.+.|. +. +.|++++..+.. ......|.|.++.. .|
T Consensus 176 ------------~~~~~~~~~g~~~~l~C~~~~~p~~p~~~~~~~w~~~~~~~~~--------~~~~~~L~i~~v~~-~d 234 (262)
T 3rjd_A 176 ------------ASVTSPLLEGNLVTLSCETKLLLQRPGLQLYFSFYMGSKTLRG--------RNTSSEYQILTARR-ED 234 (262)
T ss_dssp ------------ESSCSSEETTCCEEEEEECCCCCC-----EEEEEEETTEEEEE--------EESCCEEEESSCCG-GG
T ss_pred ------------ecCceeecCCCeEEEEeEcccCCCCCCccEEEEEEeCCcEecc--------cCCCceEEEEEech-hh
Confidence 011335788999999999999876 43 678888876531 12335799999999 99
Q ss_pred ceEEEEEEEcCCCce---eEEEEEEE
Q psy7039 424 SGSYTIQLVNTVGSD---SASCKVYV 446 (516)
Q Consensus 424 ~g~y~c~a~n~~G~~---s~s~~l~v 446 (516)
.|.|+|.|.|..|.. +....|.|
T Consensus 235 ~G~Y~C~a~n~~G~~~~~s~~~~l~V 260 (262)
T 3rjd_A 235 SGLYWCEAATEDGNVLKRSPELELQV 260 (262)
T ss_dssp CEEEEEEEEETTSSCEEECCCEEECE
T ss_pred CeEEEEEEEcccCceEEecCCeEEEE
Confidence 999999999999974 33344444
|
| >2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.91 E-value=5.1e-23 Score=198.48 Aligned_cols=225 Identities=26% Similarity=0.390 Sum_probs=184.8
Q ss_pred eccccCCceEEEEEEEEccCCCCCceecccccc------cceEEEE-EecceeeEEEccCCCCCceEEEEEEEecCCCcc
Q psy7039 235 DNNVHEGKAYEYRVSAVNAAGTEKPKISLDALI------GKRIKEF-VTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDM 307 (516)
Q Consensus 235 ~~~l~~g~~~~~~~~~~~~~g~p~p~i~W~~~~------~~~~~~~-~~~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~ 307 (516)
...+.+|+.+.|.|.+ .|.|.+.+.|.+.. +..+.+. .......|.|.+++.+|+|.|+|.|.|..|...
T Consensus 13 ~~~v~~G~~v~l~C~~---~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~ 89 (305)
T 2nzi_A 13 NLNVRYQSNATLVCKV---TGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRATNQGGSVS 89 (305)
T ss_dssp CEEECTTCCEEEEEEE---ECSSCCEEEEEETTEECCCCSSSEEEEEETTTEEEEEESSCCGGGCSEEEEEEEETTEEEE
T ss_pred ceEEeCCCcEEEEEEE---eCCCCCeEEEEECCEEcccCCCeEEEEECCCCEEEEEEccCChhhCeEEEEEEEcCCCCcc
Confidence 3456789999999998 78899999996521 2223322 234456999999999999999999999998887
Q ss_pred eeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeeecCCce
Q psy7039 308 ADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTP 387 (516)
Q Consensus 308 ~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i 387 (516)
..+.|.|...|.....+. ........+..|+.+.|.|.+.|.|.+.+
T Consensus 90 ~~~~l~V~~~p~~~~~~~---------------------------------~~~~~~~~~~~g~~~~l~C~~~g~p~p~i 136 (305)
T 2nzi_A 90 GTASLEVEVPAKIHLPKT---------------------------------LEGMGAVHALRGEVVSIKIPFSGKPDPVI 136 (305)
T ss_dssp EEEEEEECEEEEECCCHH---------------------------------HHSSCCEEEETTCCEEEEEEEEEESCCEE
T ss_pred ceEEEEEecCCccCCCcc---------------------------------ccccccEEecCCCEEEEEEEECCCCCCEE
Confidence 788888876543221100 01124467889999999999999999999
Q ss_pred EEEECCeecCCCCceEEEEcCCeEEEEEcC-ceecCCceEEEEEEEcCCCceeEEEEEEEecCCCCCCCCcccccccCCe
Q psy7039 388 IWTVNGDEVSPDGRIKFETSENQTIYRNKS-AKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQGPLDVSDITPES 466 (516)
Q Consensus 388 ~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~-~~~~~~~g~y~c~a~n~~G~~s~s~~l~v~~~p~~P~~~l~~~~~~~~~ 466 (516)
.|++++..+....++.+........|.|.+ +.. .|.|.|+|.|.|..|....+..|.|...|.+| ..+.+..+..++
T Consensus 137 ~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~-~d~G~Y~C~a~N~~G~~~~~~~l~v~~~P~~p-~~~~~~~~~~~~ 214 (305)
T 2nzi_A 137 TWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVER-KDAGFYVVCAKNRFGIDQKTVELDVADVPDPP-RGVKVSDVSRDS 214 (305)
T ss_dssp EEEESSSBCCSSSSCEEEECSSEEEEEETTCCCS-TTCEEEEEEEEETTEEEEEEEEEEEEBCCCCC-EEEEEESCCSSC
T ss_pred EEEECCEECCCCCcEEEEEcCCceEEEEecCCcc-CccEEEEEEEEeCCCceeeEEEEEEecCCCCC-CCceeeeccCCE
Confidence 999999988877888887777788999999 999 99999999999999999999999999999988 778888889999
Q ss_pred EEEEeeCCCCCCCCCcceEEEEEEecCCCce
Q psy7039 467 CSLSWKPPLDDGGSPITNYVVEKYESATGVS 497 (516)
Q Consensus 467 ~~l~W~~p~~~~~~~i~~Y~v~~~~~~~~~~ 497 (516)
+.|+|++|..+++.++..|.|+++......|
T Consensus 215 v~l~w~~p~~~g~~~i~~y~v~~~~~~~~~w 245 (305)
T 2nzi_A 215 VNLTWTEPASDGGSKITNYIVEKCATTAERW 245 (305)
T ss_dssp EEEEEECCSCCSBSCEEEEEEEEEETTSCCE
T ss_pred EEEEEcCCccCCCCceeEEEEEEecCCCCcc
Confidence 9999999877888899999999998876553
|
| >3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.91 E-value=2e-23 Score=209.65 Aligned_cols=265 Identities=19% Similarity=0.234 Sum_probs=191.3
Q ss_pred CcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecC-cCceeeEEeeCCeeeccC--CceEEeecCCe
Q psy7039 119 STLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLS-EPFLNHGWSINGQVCQIG--GRADVQTTKSE 195 (516)
Q Consensus 119 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~p~~~i~W~~~~~~~~~~--~~~~~~~~~~~ 195 (516)
..+..+.+.+|+.+.|.|.+. + .|.+.+.|++++..+... .+.... ..
T Consensus 26 ~~P~~~~v~~G~~v~L~C~~~--------------------------~~~p~~~v~W~k~g~~~~~~~~~~~~~~---~~ 76 (403)
T 3laf_A 26 SEPSDAVTMRGGNVLLNCSAE--------------------------SDRGVPVIKWKKDGLILALGMDDRKQQL---PN 76 (403)
T ss_dssp ECCCCEEECTTCCEEECCEEE--------------------------CTTCCCEEEEEETTEECCTTSCTTEEEC---TT
T ss_pred eCCCceEEecCCcEEEEEEcC--------------------------CCCCCceEEEEECCEECccCCcccEEEe---cC
Confidence 567778999999999999998 5 678899999999988643 333332 22
Q ss_pred eEEEeccC-----CCCCCeeEEEEEEcCCCceEE----EEEeec-eee----eeccccCCceEEEEEEEEccCCCCCcee
Q psy7039 196 TVLDIPFC-----SRSDTGHYSLTLENNLGTATA----SAHVTG-TEF----TDNNVHEGKAYEYRVSAVNAAGTEKPKI 261 (516)
Q Consensus 196 ~~l~i~~~-----~~~d~g~Y~c~~~~~~g~~~~----~~~~~~-~~~----~~~~l~~g~~~~~~~~~~~~~g~p~p~i 261 (516)
..|.|.++ +.+|+|.|+|.+.+..+.... .+.+.. ..+ ....+.+|+.+.+.|.+ .|.|.+.+
T Consensus 77 ~~l~i~~~~~~~~~~~D~G~Y~C~~~~~~~~~~~s~~~~l~v~~p~~~~~~~~~~~~~~G~~v~l~C~~---~~~p~~~v 153 (403)
T 3laf_A 77 GSLLIQNILHSRHHKPDEGLYQCEASLGDSGSIISRTAKVMVAGPLRFLSQTESITAFMGDTVLLKCEV---IGDPMPTI 153 (403)
T ss_dssp SCEEECSCCCBTTBCSSCEEEEEEEECGGGCEEECCCEEEEECCCCEECSCCCCEEEETTSCEEECCCE---ECSSCCEE
T ss_pred CcEEEeeeeccCCCCCcceEEEEEEEeCCCccEEEEEEEEEecCCCccccCCCcEEEEcCCeEEEEEEE---cccCCCeE
Confidence 35777777 678999999999965443321 111111 111 22356689999999988 68899999
Q ss_pred cccccccc-----eEEEEEecceeeEEEccCCCCCceEEEEEEEecCCCc-ceeEEEEEecCCCCCCCCceeeeccCCee
Q psy7039 262 SLDALIGK-----RIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGID-MADIEVVVVSKPGPPTGPIDYTTVTPESV 335 (516)
Q Consensus 262 ~W~~~~~~-----~~~~~~~~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~-~~~~~l~v~~~p~~p~~p~~~~~~~~~~~ 335 (516)
.|.+.... ............|.|.++..+|+|.|+|.|.|..|.. .....+.|...|..+..+ .+.
T Consensus 154 ~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~~l~v~~~p~~~~~~-~~~------- 225 (403)
T 3laf_A 154 HWQKNQQDLNPIPGDSRVVVLPSGALQISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQL-YFL------- 225 (403)
T ss_dssp EEEESSSBCCCCTTCCSEEECTTSCEEECSCCGGGCEEEEEEEECSSCCCBCCCEEEEEECCCCCCEEE-EEE-------
T ss_pred EEEECCEeccccCCceEEEEcCCceEEEcccccccCEEEEEEEEcCCCceeccceeEEEecCCCcccCc-eEe-------
Confidence 99652211 1111123445689999999999999999999987764 346777777665543210 000
Q ss_pred EEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEEEEcCCeEEEEE
Q psy7039 336 SMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRN 415 (516)
Q Consensus 336 ~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i 415 (516)
..+....+..|+.+.|.|.+.+.|.+.+.|++++..+............ ..|.|
T Consensus 226 ------------------------~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~--~~L~i 279 (403)
T 3laf_A 226 ------------------------QRPSNVIAIEGKDAVLECCVSGYPPPSFTWLRGEEVIQLRSKKYSLLGG--SNLLI 279 (403)
T ss_dssp ------------------------ECCCCEEEETTSCEEECCEEEEESCCEEEEEETTEECCCSSSSEEEETT--TEEEE
T ss_pred ------------------------cCCCceEecCCCcEEEEEEcCCCCCCeEEEEECCeeccCCCceEEECCc--cEEEE
Confidence 1234567889999999999999999999999999887644332222222 36999
Q ss_pred cCceecCCceEEEEEEEcCCCceeEEEEEEEecCC
Q psy7039 416 KSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKP 450 (516)
Q Consensus 416 ~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~v~~~p 450 (516)
.++.. .|.|.|+|.|.|..|..+.+..|.|..+|
T Consensus 280 ~~~~~-~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p 313 (403)
T 3laf_A 280 SNVTD-DDSGTYTCVVTYKNENISASAELTVLVPP 313 (403)
T ss_dssp CSCCG-GGCEEEEEEEEETTEEEEEEEEEEEEEEE
T ss_pred eCCCH-HHCEEEEEEEEcCCCceEEEEEEEEECCC
Confidence 99999 99999999999999998888899887665
|
| >3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X* | Back alignment and structure |
|---|
Probab=99.91 E-value=2.2e-23 Score=199.34 Aligned_cols=263 Identities=16% Similarity=0.176 Sum_probs=181.0
Q ss_pred CCccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEeec
Q psy7039 113 APRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTT 192 (516)
Q Consensus 113 ~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~ 192 (516)
+|.|. ..+..+.+.+|+.+.|.|.+. + .+.|++++... ......
T Consensus 4 ~p~i~-~~~~~~~v~~G~~v~L~C~~~--------------------------~----~v~W~~~~~~~-----~~~~~~ 47 (289)
T 3ejj_X 4 APVIE-PSGPELVVEPGETVTLRCVSN--------------------------G----SVEWDGPISPY-----WTLDPE 47 (289)
T ss_dssp CCEEE-SCSSEEEECTTCCEEEEEECS--------------------------S----CCEEECSCSSS-----SEECCC
T ss_pred CcEec-CCCceEEECCCCCEEEEEEeC--------------------------C----cEEEccCCCce-----EEEecc
Confidence 45555 555678899999999999998 5 48999765321 233334
Q ss_pred CCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEEeecee----e----eeccccCCceEEEEEEEEccCCCCCce-ecc
Q psy7039 193 KSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVTGTE----F----TDNNVHEGKAYEYRVSAVNAAGTEKPK-ISL 263 (516)
Q Consensus 193 ~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~~~~~----~----~~~~l~~g~~~~~~~~~~~~~g~p~p~-i~W 263 (516)
.....|.|.+++.+|+|.|+|.+.+..+.......+.+.. + ....+.+|+.+.+.|.+ .|.+.+. +.|
T Consensus 48 ~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~v~~g~~v~L~C~~---~~~~~~~~v~W 124 (289)
T 3ejj_X 48 SPGSTLTTRNATFKNTGTYRCTELEDPMAGSTTIHLYVKDPAHSWNLLAQEVTVVEGQEAVLPCLI---TDPALKDSVSL 124 (289)
T ss_dssp SSCCEEEESSCCGGGCEEEEEECCC-----CEEEEEEECCSSCSEEESCSEEEEETTSCEEECEEE---SCGGGGGSEEE
T ss_pred CCccEEEEeeeccccCEEEEEEEeccCCcceeEEEEEEeCCCcceecccceEEEecCCceEeEEEc---cCCCcceEEEE
Confidence 5567999999999999999999988777655554433321 1 23456789999999998 5666655 999
Q ss_pred cccccceE----EEEEecceeeEEEccCCCCCceEEEEEEE-ecCCCcceeEEEEEecCCCCCCCCceeeeccCCeeEEE
Q psy7039 264 DALIGKRI----KEFVTSTTASLNIKNSVRKDSGIYKIEAK-NDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMS 338 (516)
Q Consensus 264 ~~~~~~~~----~~~~~~~~~~l~i~~l~~~d~g~y~c~a~-n~~g~~~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~ 338 (516)
....+... ... ......|.|.++..+|+|.|+|.|. +..+..+..+.|.|...+..+.. +.
T Consensus 125 ~~~~~~~~~~~~~~~-~~~~~~L~i~~v~~~d~G~Y~C~a~~~~~~~~~~~~~l~V~~~~~~~p~-i~------------ 190 (289)
T 3ejj_X 125 MREGGRQVLRKTVYF-FSPWRGFIIRKAKVLDSNTYVCKTMVNGRESTSTGIWLKVNRVHPEPPQ-IK------------ 190 (289)
T ss_dssp EEGGGEECCTTCCEE-EETTTEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEESSCCCCCE-EE------------
T ss_pred EecCCeecCCCccEE-ECCCCCEEEeecccccCEEEEEEEEeCCCccccccEEEEEEECCCCCCe-EE------------
Confidence 54222111 111 1334579999999999999999999 44555666778888754322110 00
Q ss_pred ecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEee-ecCCceEEEECCeecCCCCceEEEE--cCCeEEEEE
Q psy7039 339 WKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSG-RPKPTPIWTVNGDEVSPDGRIKFET--SENQTIYRN 415 (516)
Q Consensus 339 W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g-~p~~~i~W~~~~~~l~~~~~~~~~~--~~~~~~l~i 415 (516)
..+....+..|+.+.|.|.+.+ .|.+.+.|++++..+.......... ......|.|
T Consensus 191 ---------------------~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i 249 (289)
T 3ejj_X 191 ---------------------LEPSKLVRIRGEAAQIVCSATNAEVGFNVILKRGDTKLEIPLNSDFQDNYYKKVRALSL 249 (289)
T ss_dssp ---------------------EESSSEECCSSSCEEEEEEEEESSSCCEEEEEETTEECCCCEEEEECSSSEEEEEEEEE
T ss_pred ---------------------ecCCceEEEeCCcEEEEEEeCCCCCceEEEEEECCEEeeccCCcccccceEEeeEEEEE
Confidence 1123345578999999999998 7888999999998775432221110 012358999
Q ss_pred cCceecCCceEEEEEEEcCCCceeEEEEEEEecCC
Q psy7039 416 KSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKP 450 (516)
Q Consensus 416 ~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~v~~~p 450 (516)
.++.. .|.|.|+|.|.|..|....++.|.+...+
T Consensus 250 ~~v~~-~d~G~Y~C~a~N~~G~~~~s~~L~~~~~~ 283 (289)
T 3ejj_X 250 NAVDF-QDAGIYSCVASNDVGTRTATMNFQVVESH 283 (289)
T ss_dssp SSCCS-SSCEEEEEEEECSSCEEEEEEEEECC---
T ss_pred Eeecc-cCCEEEEEEEEcCCCCccccEEEEEEecc
Confidence 99999 99999999999999999999988876543
|
| >3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=5.1e-24 Score=212.80 Aligned_cols=281 Identities=16% Similarity=0.176 Sum_probs=181.3
Q ss_pred ecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEeecCCeeEEEeccC-CC
Q psy7039 127 KAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFC-SR 205 (516)
Q Consensus 127 ~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~-~~ 205 (516)
.+|+.+.|.|.+. |.|.+.|+|++++..+......++...+ ..|.|.+. +.
T Consensus 21 ~eg~~v~L~C~~~--------------------------g~P~p~i~W~k~g~~l~~~~~~~~~~~~--g~l~i~~~~~~ 72 (384)
T 3kld_A 21 SEEKKVKLSCEVK--------------------------GNPKPHIRWKLNGTDVDIGMDFRYSVVD--GSLLINNPNKT 72 (384)
T ss_dssp CSCSEEEECCEEE--------------------------EESCCEEEEEETTEECCC----CEEEET--TEEEEESCCHH
T ss_pred CCCCeEEEEeEec--------------------------CCCCCEEEEEECCEECcCCCCccEEEEC--CEEEEcCCCCc
Confidence 5789999999999 9999999999999998754433333222 36777776 78
Q ss_pred CCCeeEEEEEEcCCCceEE---EEEeece-ee-----eeccccCCceEEEEEEEEccCCCCCceeccccccc---ceEEE
Q psy7039 206 SDTGHYSLTLENNLGTATA---SAHVTGT-EF-----TDNNVHEGKAYEYRVSAVNAAGTEKPKISLDALIG---KRIKE 273 (516)
Q Consensus 206 ~d~g~Y~c~~~~~~g~~~~---~~~~~~~-~~-----~~~~l~~g~~~~~~~~~~~~~g~p~p~i~W~~~~~---~~~~~ 273 (516)
+|+|.|+|.+.|..|.... .+.+... .+ ....+.+|+...+.|.+ ..+.+.+.+.|..... .....
T Consensus 73 ~D~G~Y~C~A~N~~G~~~s~~~~l~v~~~~~~~~~~~~~~~v~~G~~~~l~C~~--~~~~~~~~~~W~~~~~~~~~~~~~ 150 (384)
T 3kld_A 73 QDAGTYQCIATNSFGTIVSREAKLQFAYLENFKTRTRSTVSVRRGQGMVLLCGP--PPHSGELSYAWIFNEYPSYQDNRR 150 (384)
T ss_dssp HHCEEEEEEEEETTEEEECCCEEEEEEEECCCSCCCCCCEEEEETCCEEECCCC--CSEESCEEEEEEETTEECCCSSSE
T ss_pred ccCEEEEEEEEcCcccEEecceEEEEecccccccCCCCceeEEcCCCeEEecCC--CCCCCCeEEEEEECCCCCEeeccE
Confidence 9999999999999886432 1211111 01 12345678888888854 2345678899965211 11112
Q ss_pred EEecceeeEEEccCCCCCceEEEEEEEecCCCcce---eEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCce
Q psy7039 274 FVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMA---DIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPI 350 (516)
Q Consensus 274 ~~~~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~---~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i 350 (516)
......+.|.|.++..+|+|.|+|.|.|..+.... ...+.+........ ..-.+.-
T Consensus 151 ~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~~~~~v~~~~~~~~----------~~p~~~~----------- 209 (384)
T 3kld_A 151 FVSQETGNLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGE----------YEPKIEV----------- 209 (384)
T ss_dssp EECTTTCCEEESSCCGGGCEEEEEEEEETTTTEEEECCCEEEEEEEEEECCC----------EEEEEEE-----------
T ss_pred EEEcCCCcEEEeecCHHHCceEEEEEecccccceeeCCceEEEEccCCcccc----------cCCceee-----------
Confidence 23345678999999999999999999998765321 11122211000000 0000000
Q ss_pred eeccccccccccccEEEEcCCeEEEEEEEeeecCCceEEEECC-eecCCCCceEEEEcCCeEEEEEcCceecCCceEEEE
Q psy7039 351 TGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNG-DEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTI 429 (516)
Q Consensus 351 ~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~-~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c 429 (516)
..+....+..|+.+.|.|.+.|.|.|.+.|++++ ..+.... .. ......|.|.++.. .|+|.|+|
T Consensus 210 ---------~~~~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~~~~~~~~~~--~~--~~~~~~L~I~~v~~-~D~G~Y~C 275 (384)
T 3kld_A 210 ---------QFPETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKA--RR--HKSNGILEIPNFQQ-EDAGSYEC 275 (384)
T ss_dssp ---------ECCSEEEEETTSCEEEEEEEEEESCCEEEEEETTCCCCCTTC--EE--CTTSCEEEECSCCG-GGCEEEEE
T ss_pred ---------cCCCceEecCCCcEEEEEEEeecCCCcEEEEeCCCccccccc--ee--cCCCcEEEECCCCh-hhCEEEEE
Confidence 1224567889999999999999999999999954 3443221 11 22334799999999 99999999
Q ss_pred EEEcCCCceeEEEEEEEecCCCCCCCCcccccccCCeEEEEee
Q psy7039 430 QLVNTVGSDSASCKVYVVDKPSPPQGPLDVSDITPESCSLSWK 472 (516)
Q Consensus 430 ~a~n~~G~~s~s~~l~v~~~p~~P~~~l~~~~~~~~~~~l~W~ 472 (516)
.|.|..|.......|.|..+|......-......++.+.|.+.
T Consensus 276 ~a~N~~G~~~~~~~l~v~~~P~~~~~~~~~~v~~g~~v~l~C~ 318 (384)
T 3kld_A 276 VAENSRGKNVAKGQLTFYAQPNWVQIINDIHVAMEESVFWECK 318 (384)
T ss_dssp EEEETTEEEEEEEEEEEEEEEEEEECCCCEEECTTCCEEEECE
T ss_pred EEEcCCCeEEEEEEEEEecCCccccCCCceEecCCCCEEEEeE
Confidence 9999999988888888876653211111122234555666554
|
| >4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R | Back alignment and structure |
|---|
Probab=99.91 E-value=3e-23 Score=201.11 Aligned_cols=259 Identities=13% Similarity=0.100 Sum_probs=175.5
Q ss_pred CcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCce-----eeEEeeCCee-------------
Q psy7039 119 STLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFL-----NHGWSINGQV------------- 180 (516)
Q Consensus 119 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-----~i~W~~~~~~------------- 180 (516)
..|..+.+..|+++.|.|.+. +.+.+ .+.|++++..
T Consensus 5 ~~P~~v~~~~G~~v~L~C~v~--------------------------~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~ 58 (313)
T 4fqp_A 5 QAPTQVPGFLGDSVTLPCYLQ--------------------------VPNMEVTHVSQLTWARHGESGSMAVFHQTQGPS 58 (313)
T ss_dssp ECCSEECCBTTSCEEECCEEE--------------------------CCTTSCCCCCEEEEEETTSSSCSEEEETTTEEE
T ss_pred cCCCEEEEecCCCEEEEEEEE--------------------------CCCCCccceEEEEEEECCCCcceEEEecCCCce
Confidence 345567788999999999998 54433 4788886642
Q ss_pred eccCCceEEeec-----CCeeEEEeccCCCCCCeeEEEEEEcC-CCceEEEEEeecee-------eeeccccCCceEEEE
Q psy7039 181 CQIGGRADVQTT-----KSETVLDIPFCSRSDTGHYSLTLENN-LGTATASAHVTGTE-------FTDNNVHEGKAYEYR 247 (516)
Q Consensus 181 ~~~~~~~~~~~~-----~~~~~l~i~~~~~~d~g~Y~c~~~~~-~g~~~~~~~~~~~~-------~~~~~l~~g~~~~~~ 247 (516)
+....++.+... ..+.+|.|.+++.+|+|.|+|.+.+. .+.......+.... .....+..+....+.
T Consensus 59 ~~~~~r~~~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~~~~l~v~~~P~~~~~~~~~~~~~~~~~~~~ 138 (313)
T 4fqp_A 59 YSESKRLEFVAARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKPQNTAEVQKVQLTGEPVPMAR 138 (313)
T ss_dssp ESSTTTEEESSCCTTSCCCBCCEEECSCCGGGCEEEEEEEECSSSCEEEEEEEECCBBCCEEEEEECCBCCCSSCEEEEE
T ss_pred eccCcceEEEeeccCCcccceEEEECcCChhhCEEEEEEEeeccCcceeeeeeeeeccCCcceecccceEeecCceEEEE
Confidence 222334443221 23467999999999999999988644 44444444333211 123345567788888
Q ss_pred EEEEccCCCCCceecccccccceEE---EEEec-----ceeeEEEccCCCCCceEEEEEEEecCCCcceeE--EEEEecC
Q psy7039 248 VSAVNAAGTEKPKISLDALIGKRIK---EFVTS-----TTASLNIKNSVRKDSGIYKIEAKNDYGIDMADI--EVVVVSK 317 (516)
Q Consensus 248 ~~~~~~~g~p~p~i~W~~~~~~~~~---~~~~~-----~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~~~--~l~v~~~ 317 (516)
|.+. .|.|.|.+.|.+....... ..... ....|.|......|.|.|+|.|.|..+...... .|.|..+
T Consensus 139 C~~~--~~~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~l~V~~~ 216 (313)
T 4fqp_A 139 CVST--GGRPPAQITWHSDLGGMPNTSQVPGFLSGTVTVTSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYYP 216 (313)
T ss_dssp EEEE--EEBSCCEEEEEETTCCEEEEEEEECSSTTCEEEEEEEEECCCGGGTTCEEEEEEECTTSSSCEEEEEECCBCEE
T ss_pred EEcc--CccCCcEEEeecCCccccccceeeeecccccccceeeeecccccccCeeEEEEEEccCcCccceeeeecccccC
Confidence 8763 5778999999763221111 11111 123588899999999999999999877655443 3444333
Q ss_pred CCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeeecCC-ceEEEECCeec
Q psy7039 318 PGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKP-TPIWTVNGDEV 396 (516)
Q Consensus 318 p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~-~i~W~~~~~~l 396 (516)
|... + .......+..|+.+.|.|.+.|+|.| .|.|++++..+
T Consensus 217 P~v~---------------~----------------------~~~~~~~~~~g~~v~l~C~~~g~P~p~~v~W~~~~~~l 259 (313)
T 4fqp_A 217 PEVS---------------I----------------------SGYDNNWYLGQNEATLTCDARSNPEPTGYNWSTTMGPL 259 (313)
T ss_dssp EEEE---------------E----------------------ECCCSCEETTCCCEEEEEEEEEESCCCEEEEEETTBSC
T ss_pred Cccc---------------c----------------------ccccceeecCCCeEEEEEEecCCCCCcEEEEEECCEEC
Confidence 3210 0 01122345678899999999999999 69999999877
Q ss_pred CCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEEEEecC
Q psy7039 397 SPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDK 449 (516)
Q Consensus 397 ~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~v~~~ 449 (516)
.... . ..+ ..|.|.++.. .|+|.|+|.|.|..|..+.++.|.|..+
T Consensus 260 ~~~~--~--~~~--~~L~i~~v~~-~d~G~Y~C~a~N~~G~~~~~~~l~V~~~ 305 (313)
T 4fqp_A 260 PPFA--V--AQG--AQLLIRPVDK-PINTTLICNVTNALGARQAELTVQVKEG 305 (313)
T ss_dssp CTTE--E--EET--TEEEECCCSS-CCEEEEEEEEECSSCEEEEEEEEEEECC
T ss_pred CCce--E--EeC--CEEEECcCCh-hhCEEEEEEEEeCCCcEEEEEEEEEEeC
Confidence 5432 1 112 3699999999 9999999999999999999999999864
|
| >3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.7e-23 Score=202.99 Aligned_cols=253 Identities=15% Similarity=0.089 Sum_probs=183.9
Q ss_pred cccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecC---------cCceeeEEeeCCeeeccCCceEEe
Q psy7039 120 TLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLS---------EPFLNHGWSINGQVCQIGGRADVQ 190 (516)
Q Consensus 120 ~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~p~~~i~W~~~~~~~~~~~~~~~~ 190 (516)
....+.+.+|+++.|.|.+. + .|.+.+.|++++..+....+. .
T Consensus 35 ~~~~v~v~eG~~v~L~C~~~--------------------------~~~~~~~~~~~p~~~v~W~k~~~~~~~~~~~-~- 86 (329)
T 3oq3_B 35 GTMNDMAALGEPFSAKCPPI--------------------------EDSLLSHRYNDKDNVVNWEKIGKTRRPLNRR-V- 86 (329)
T ss_dssp EEEEEEECTTSCEEECCHHH--------------------------HCTTTGGGSCCTTCEEEEEECSSSCEECSTT-E-
T ss_pred CcceEEEECCCeEEEEccCC--------------------------CCccccccccCCCCeeEEEECCCCccccCce-e-
Confidence 33567899999999999998 4 366899999998776544333 1
Q ss_pred ecCCeeEEEeccCCCCCCe-eEEEEEEcCCCceEEEEEeec-----ee---eeeccccCCceEEEEEEEEccCCCC-Cce
Q psy7039 191 TTKSETVLDIPFCSRSDTG-HYSLTLENNLGTATASAHVTG-----TE---FTDNNVHEGKAYEYRVSAVNAAGTE-KPK 260 (516)
Q Consensus 191 ~~~~~~~l~i~~~~~~d~g-~Y~c~~~~~~g~~~~~~~~~~-----~~---~~~~~l~~g~~~~~~~~~~~~~g~p-~p~ 260 (516)
...+|.|.+++.+|+| .|+|.+.|..|.......... .. .....+.+|..+.+.|.+ .|.| .|.
T Consensus 87 ---~~~~L~i~~v~~~D~Gs~Y~C~a~n~~g~~~~~~~~~v~~~~p~~~~~~~~~~~~~G~~v~L~C~~---~g~p~~~~ 160 (329)
T 3oq3_B 87 ---KNGDLWIANYTSNDSHRRYLCTVTTKNGDCVQGIVRSHIRKPPSCIPETYELGTHDKYGIDLYCGI---LYAKHYNN 160 (329)
T ss_dssp ---ETTEEEESSCCGGGGGCCEEEEEECTTSCEEEEEEEEEECCCCSCEEEEEETTSSTTTCEEEECCC---CSCCCCCE
T ss_pred ---ecceEEEcCCChHhCCCcEEEEEEeCCCceeeEEEEEEEcCCCcEeccccceEEeCCCcEEEEecc---CCCCCCce
Confidence 2458999999999999 899999998876443331111 11 122345679999999977 8888 899
Q ss_pred ecccccc------cceEEEEEecceeeEEEccCCCCCceEEEEEEEec--CCCccee----EEEEEecCCCCCCCCceee
Q psy7039 261 ISLDALI------GKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKND--YGIDMAD----IEVVVVSKPGPPTGPIDYT 328 (516)
Q Consensus 261 i~W~~~~------~~~~~~~~~~~~~~l~i~~l~~~d~g~y~c~a~n~--~g~~~~~----~~l~v~~~p~~p~~p~~~~ 328 (516)
+.|.+.. ...+.. ....|.|.++..+|+|.|+|.|.|. .|..... +.|.|...|..... +
T Consensus 161 i~W~k~~~~l~~~~~~~~~----~~~~L~I~~v~~~D~G~Y~C~a~n~~~~g~~~~~~s~~~~l~V~~~~~~~~~-~--- 232 (329)
T 3oq3_B 161 ITWYKNNQELIIDGTKYSQ----SGQNLIIHNPELEDSGRYDCYVHYDDVRIKNDIVVSRCKILTVIPSQDHRFK-L--- 232 (329)
T ss_dssp EEEEETTEECCCSSSSEEE----ETTEEEECSCCGGGCEEEEEEEEECCTTSSSCEEEEEEEEEEEECCCCCCEE-E---
T ss_pred EEEEECCccCCCCCceEec----CCCEEEEeecChhhCEEEEEEEEecccCCCceeEEEeeEEEEEECCCCCCCc-e---
Confidence 9997521 112211 1478999999999999999999997 6655443 56777655532100 0
Q ss_pred eccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeeec---CC-ceEEEECCeec-CCCCceE
Q psy7039 329 TVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRP---KP-TPIWTVNGDEV-SPDGRIK 403 (516)
Q Consensus 329 ~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p---~~-~i~W~~~~~~l-~~~~~~~ 403 (516)
..+....+..|+.+.|.|.+.|.| .+ .+.|++++..+ ..+....
T Consensus 233 -------------------------------~~~~~~~v~~G~~~~l~C~~~g~p~~~~~i~v~W~~~g~~i~~~~~~~~ 281 (329)
T 3oq3_B 233 -------------------------------ILDPKINVTIGEPANITCTAVSTSLLVDDVLIDWENPSGWIIGLDFGVY 281 (329)
T ss_dssp -------------------------------ECCSEEEECTTSCEEEEEEEEETTCCTTCCEEEEECTTSCBCCBCSSEE
T ss_pred -------------------------------ecCCeeEEecCCCEEEEEEEEECCCCCCCcEEEEEECCeeeeccCCcee
Confidence 012346788999999999999998 67 88999999874 3333322
Q ss_pred EE--EcC--CeEEEEEcCceecCCce-EEEEEEEcCCCceeEEEEEEE
Q psy7039 404 FE--TSE--NQTIYRNKSAKRATDSG-SYTIQLVNTVGSDSASCKVYV 446 (516)
Q Consensus 404 ~~--~~~--~~~~l~i~~~~~~~~~g-~y~c~a~n~~G~~s~s~~l~v 446 (516)
.. ... ....|.|.++.. .|.| .|+|.|.|..|....++.|.|
T Consensus 282 ~~~~~~~~~~~~~L~I~~v~~-~D~G~~Y~C~a~N~~G~~~~~~~l~v 328 (329)
T 3oq3_B 282 SILTSSGGITEATLYFENVTE-EYIGNTYTCRGHNYYFDKTLTTTVVL 328 (329)
T ss_dssp EEEEEETTEEEEEEEESSCCG-GGTTCEEEEEEECSSCEEEEEEEEEE
T ss_pred eeecccCceeEeEEEEEeccH-HHCCCcEEEEEEecCCceEEEEEEEe
Confidence 21 111 346899999999 9999 999999999999888887776
|
| >3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.91 E-value=3.4e-23 Score=198.21 Aligned_cols=256 Identities=13% Similarity=0.067 Sum_probs=168.9
Q ss_pred cccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEeecC-CeeEE
Q psy7039 120 TLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTTK-SETVL 198 (516)
Q Consensus 120 ~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~-~~~~l 198 (516)
....+.+.+|+++.|.|.+. +. +.|++++..+. .+......+ ....|
T Consensus 6 ~~~~~~v~~G~~v~L~C~~~--------------------------~~----v~W~~~~~~~~--~~~~~~~~~~~~~~L 53 (289)
T 3mjg_X 6 PGPELVLNVSSTFVLTCSGS--------------------------AP----VVWERMSQEPP--QEMAKAQDGTFSSVL 53 (289)
T ss_dssp SCSEEECCTTCCEEEEEEES--------------------------SC----CEEEBTTBCCS--EEEEECTTSCEEEEE
T ss_pred CCCeEEEeCCCcEEEEEecc--------------------------ce----EEEECCCCCcc--cceeccCCCceeEEE
Confidence 34457889999999999998 54 99999988763 222222222 24799
Q ss_pred EeccCCCCCCeeEEEEEEcCCCc---eEEEEEeece----eee----e---ccccCCceEEEEEEEEccCCCCCceeccc
Q psy7039 199 DIPFCSRSDTGHYSLTLENNLGT---ATASAHVTGT----EFT----D---NNVHEGKAYEYRVSAVNAAGTEKPKISLD 264 (516)
Q Consensus 199 ~i~~~~~~d~g~Y~c~~~~~~g~---~~~~~~~~~~----~~~----~---~~l~~g~~~~~~~~~~~~~g~p~p~i~W~ 264 (516)
.|.+++.+|+|.|+|.+.|..|. ....+.+.+. .+. . ..+.+|+.+.+.|.+ . .|.|.++|.
T Consensus 54 ~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~~~~v~v~~p~~~~~~~~~~~~~~~v~~G~~v~l~C~~---~-~p~~~v~w~ 129 (289)
T 3mjg_X 54 TLTNLTGLDTGEYFCTHNDSRGLETDERKRLYIFVPDPTVGFLPNDAEELFIFLTEITEITIPCRV---T-DPQLVVTLH 129 (289)
T ss_dssp EECSCCGGGCEEEEEECCC------CCCEEEEEECCCTTCCBCCCCHHHHEEEESSCCCEEECCCB---S-CTTSCEEEE
T ss_pred EEccCChhhCEEEEEEEcccCCCCcCcEEeEEEEEECCCcCcccCCCCcceEEeecCCeEEEEeEc---C-CCCceEEEE
Confidence 99999999999999999998765 2233333221 111 1 347789999999988 3 456677775
Q ss_pred ccc-cceEEEEEecceeeEEEccCCCCCceEEEEEEEecCCCc-ceeEEEEEecCCCCCCCCceeeeccCCeeEEEecCC
Q psy7039 265 ALI-GKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGID-MADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPP 342 (516)
Q Consensus 265 ~~~-~~~~~~~~~~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~-~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p 342 (516)
+.. +...........+.+ ...|+|.|+|.|.|..+.. +....+.|... .+|. +.
T Consensus 130 ~~~~~~~~~~~~~~~~~~~-----~~~d~G~Y~C~a~n~~~~~~s~~~~l~v~~~-~~p~--i~---------------- 185 (289)
T 3mjg_X 130 EKKGDVALPVPYDHQRGFS-----GIFEDRSYICKTTIGDREVDSDAYYVYRLQV-SSIN--VS---------------- 185 (289)
T ss_dssp ESSCCSCCCCCEETTTEEE-----ECCCSSEEEEEEEETTEEEECCCEEEEECCC-CCCC--CE----------------
T ss_pred eCCCCCccceeecCCcCee-----eeccCcEEEEEEEeCCceeeeeeEEEEecCC-CCCC--cE----------------
Confidence 432 222111111222211 3579999999999876554 33455665543 1111 11
Q ss_pred CCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEEEE-----cCCeEEEEEcC
Q psy7039 343 VDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFET-----SENQTIYRNKS 417 (516)
Q Consensus 343 ~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~-----~~~~~~l~i~~ 417 (516)
..+....+..|+.+.|.|.+.|.|.+.+.|++++............. ......|.|.+
T Consensus 186 -----------------~~~~~~~v~~G~~v~L~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~ 248 (289)
T 3mjg_X 186 -----------------VNAVQTVVRQGENITLMCIVIGNEVVNFEWTYPRKESGRLVEPVTDFLLDMPYHIRSILHIPS 248 (289)
T ss_dssp -----------------EEESCSEEETTSCEEEEEEEESCSSBEEEEECTTSSSSCCCCCEEEESCTTTTEEEEEEEESS
T ss_pred -----------------EeCCcceeEcCCCEEEEEEECCCCCcceEEEcCCccCCCcccccccccCCcceEEEEEEEEcc
Confidence 11233568899999999999999999999998776543222211111 12346899999
Q ss_pred ceecCCceEEEEEEEcCCCceeEEEEEEEecCCCCC
Q psy7039 418 AKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPP 453 (516)
Q Consensus 418 ~~~~~~~g~y~c~a~n~~G~~s~s~~l~v~~~p~~P 453 (516)
+.. .|.|.|+|.|.|..|....++.|+|...+...
T Consensus 249 v~~-~D~G~Y~C~a~N~~G~~~~~~~l~v~~~~~~~ 283 (289)
T 3mjg_X 249 AEL-EDSGTYTCNVTESVNDHQDEKAINITVVESGH 283 (289)
T ss_dssp CCS-SCCEEEEEEEEETTTTEEEEEEEEEEEEC---
T ss_pred cCh-hhCcEEEEEeecCCCCceeEEEEEEEEEecCc
Confidence 999 99999999999999999999999998877654
|
| >4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.4e-23 Score=202.94 Aligned_cols=259 Identities=14% Similarity=0.120 Sum_probs=175.4
Q ss_pred ceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeec---------------c--CC
Q psy7039 123 DVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQ---------------I--GG 185 (516)
Q Consensus 123 ~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~---------------~--~~ 185 (516)
.+.+.+|+++.|.|.+.+ +.+.+.++|++++.... . ..
T Consensus 8 ~vtv~~G~~v~L~C~v~~-------------------------~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~ 62 (308)
T 4fom_A 8 HVTAVWGKNVSLKCLIEV-------------------------NETITQISWEKIHGKSSQTVAVHHPQYGFSVQGEYQG 62 (308)
T ss_dssp SCEEETTSCEEECCBCCC-------------------------SSCEEEEEEEEESSSCEEEEEEECSSSCEEECTTTTT
T ss_pred EeEEEcCCcEEEEEEecC-------------------------CCCCcEEEEEECCCCCCceEEEecCCCCceecCcccc
Confidence 477889999999999871 34556799988543211 0 12
Q ss_pred ceEEee-cCCeeEEEeccCCCCCCeeEEEEEEcCC-CceEEEEEeecee-----e----eeccccCCceEEEEEEEEccC
Q psy7039 186 RADVQT-TKSETVLDIPFCSRSDTGHYSLTLENNL-GTATASAHVTGTE-----F----TDNNVHEGKAYEYRVSAVNAA 254 (516)
Q Consensus 186 ~~~~~~-~~~~~~l~i~~~~~~d~g~Y~c~~~~~~-g~~~~~~~~~~~~-----~----~~~~l~~g~~~~~~~~~~~~~ 254 (516)
|+.+.. .....+|.|.+++.+|+|.|+|.+.+.. |.......+.... . .......|..+.+.|.+. .
T Consensus 63 r~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~C~~~--~ 140 (308)
T 4fom_A 63 RVLFKNYSLNDATITLHNIGFSDSGKYICKAVTFPLGNAQSSTTVTVLVEPTVSLIKGPDSLIDGGNETVAAICIAA--T 140 (308)
T ss_dssp TEEESCCSSSBCCEEECSCCGGGCEEEEEEEEETTTEEEEEEEEEEEEBCCEEEEEECSSCCCTTCSCEEEEEEEEE--E
T ss_pred eEEeeccCCCceEEEEccCCHHHCEEEEEEEeeCCCcceeeeeEEEeeeccccccccccceeEEcCCceEEEEEEec--C
Confidence 222221 2234689999999999999999998864 3333333222111 1 112234578889998763 6
Q ss_pred CCCCceecccccccceE--EEEE----ecceeeEEEccCCCCCceEEEEEEEecCCCccee--EEEEEecCCCCCCCCce
Q psy7039 255 GTEKPKISLDALIGKRI--KEFV----TSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMAD--IEVVVVSKPGPPTGPID 326 (516)
Q Consensus 255 g~p~p~i~W~~~~~~~~--~~~~----~~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~~--~~l~v~~~p~~p~~p~~ 326 (516)
|.|.|.+.|.+...... .... ......|.|..+...|.|.|+|.|.|..|..... +.|.|..+|.....
T Consensus 141 g~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~l~V~~~P~~~~~--- 217 (308)
T 4fom_A 141 GKPVAHIDWEGDLGEMESTTTSFPNETATIISQYKLFPTRFARGRRITCVVKHPALEKDIRYSFILDIQYAPEVSVT--- 217 (308)
T ss_dssp EBSCCEEEECCCSSBCCEEEEECTTSCEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECCCCEEEEECCB---
T ss_pred CcCCceEEEEECCcccccccceeeeecccccccceEEeeeecCCccEEEEEEccCCCCceEEeEEEEEecCCeeEEc---
Confidence 78999999976322111 1111 1123468999999999999999999988776544 34444444322111
Q ss_pred eeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeeecCC-ceEEEECCeecCCCCceEEE
Q psy7039 327 YTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKP-TPIWTVNGDEVSPDGRIKFE 405 (516)
Q Consensus 327 ~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~-~i~W~~~~~~l~~~~~~~~~ 405 (516)
......+..|+.+.|.|.+.|.|.| .+.|++++..+....
T Consensus 218 ----------------------------------~~~~~~~~~g~~v~l~C~~~g~P~p~~v~W~k~~~~~~~~~----- 258 (308)
T 4fom_A 218 ----------------------------------GYDGNWFVGRKGVNLKCNADANPPPFKSVWSRLDGQWPDGL----- 258 (308)
T ss_dssp ----------------------------------CCCSCEETTCCSCEEECCEEEESCEEEEECCBSSSCCCSSC-----
T ss_pred ----------------------------------ccceeeeeccccEEEEEEEecCCCCcEEEEEECCeECCCcE-----
Confidence 1223355678899999999999998 699999987764432
Q ss_pred EcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEEEEecCCC
Q psy7039 406 TSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPS 451 (516)
Q Consensus 406 ~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~v~~~p~ 451 (516)
...+...|.|.++.. .|+|.|+|.|.|..|..+.++.|.|..+|.
T Consensus 259 ~~~~~~~l~i~~v~~-~d~G~Y~C~A~N~~G~~~~~~~l~V~~~P~ 303 (308)
T 4fom_A 259 LASDNTLHFVHPLTF-NYSGVYICKVTNSLGQRSDQKVIYISDPPH 303 (308)
T ss_dssp BCSTTEEECCSCCCS-CCCSEEEEEEEETTEEEEEEEECCEECCC-
T ss_pred EEcCCeEEEECCCCh-hhCEEEEEEEEeCCCcEEEEEEEEEEcCCC
Confidence 122345678899999 999999999999999999999999987654
|
| >1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R | Back alignment and structure |
|---|
Probab=99.91 E-value=1.3e-24 Score=210.73 Aligned_cols=263 Identities=16% Similarity=0.107 Sum_probs=183.1
Q ss_pred cceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcC-ceeeEEeeCCeeec----cCCceEEeecCCee
Q psy7039 122 NDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEP-FLNHGWSINGQVCQ----IGGRADVQTTKSET 196 (516)
Q Consensus 122 ~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~i~W~~~~~~~~----~~~~~~~~~~~~~~ 196 (516)
..+.+.+|+.+.|.|.+. +.+ .+.+.|++++..+. ...++... ..
T Consensus 13 ~~~~v~~G~~v~L~C~~~--------------------------~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~----~~ 62 (315)
T 1itb_B 13 IILVSSANEIDVRPCPLN--------------------------PNEHKGTITWYKDDSKTPVSTEQASRIHQH----KE 62 (315)
T ss_dssp CCCEEETTSCCCCBCCCC--------------------------SCCCSSCCCEECTTSCSCSCCCTTSSSEEC----SS
T ss_pred eEEEEcCCCcEEEEeecc--------------------------CcCCCceEEEEeCCCcCccccccCCcEecc----CC
Confidence 357889999999999999 776 78999999886432 22333332 23
Q ss_pred EEEeccCCCCCCeeEEEEEEcCCCceEEEEEeeceee-----------eeccccCCceEEEEEEEE---ccCCCCCceec
Q psy7039 197 VLDIPFCSRSDTGHYSLTLENNLGTATASAHVTGTEF-----------TDNNVHEGKAYEYRVSAV---NAAGTEKPKIS 262 (516)
Q Consensus 197 ~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~~~~~~-----------~~~~l~~g~~~~~~~~~~---~~~g~p~p~i~ 262 (516)
.|.|.+++.+|+|.|+|.+.|..|.......+..... ....+..|....+.|.+. ...|.|.|.+.
T Consensus 63 ~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~v~v~~~~p~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~g~p~~~i~ 142 (315)
T 1itb_B 63 KLWFVPAKVEDSGHYYCVVRNSSYCLRIKISAKFVENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQ 142 (315)
T ss_dssp BEECTTCCGGGCSCCEECCCSSSCCCCEECCCEEECCCTTSSSCGGGEEEEEEETTSCEEEECSSCTTTCTTTTCCCCCE
T ss_pred eEEECCCChhhCEEEEEEEeCCceEEEEEEEEEEeCCCCCcccccccccceEEecCCCeEEEEecccccccCCCCCCEEE
Confidence 8999999999999999999998877655443322111 123466789999998752 12678899999
Q ss_pred ccccccce--EEEEEecceeeEEEccCCCCCceEEEEEEE-ecCCCc---ceeEEEEEecCCCCCCCCceeeeccCCeeE
Q psy7039 263 LDALIGKR--IKEFVTSTTASLNIKNSVRKDSGIYKIEAK-NDYGID---MADIEVVVVSKPGPPTGPIDYTTVTPESVS 336 (516)
Q Consensus 263 W~~~~~~~--~~~~~~~~~~~l~i~~l~~~d~g~y~c~a~-n~~g~~---~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~ 336 (516)
|.+..... ...........|.|.++..+|+|.|+|.|. |..|.. ...+.+.+.... .+..|....
T Consensus 143 W~k~~~~l~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~~n~~g~~~~~~~~~~~~~~~~~-~~~~P~~~~-------- 213 (315)
T 1itb_B 143 WYKDCKPLLLDNIHFSGVKDRLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFITLEEN-KPTRPVIVS-------- 213 (315)
T ss_dssp EEETTEECCCCSSSEEEETTEEEESSCCGGGCEEEEEEEEEEETTEEEEEEEEEEEEEECCC-CCCCCEECS--------
T ss_pred EEECCEECCCccceEeecCceEEEEeceehhCcEEEEEEEcCCCCcEEEEEEEEEEEEecCC-CCCCCEEec--------
Confidence 96521110 000112335589999999999999999999 777775 233334333221 111111000
Q ss_pred EEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEEE----Ec-----
Q psy7039 337 MSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFE----TS----- 407 (516)
Q Consensus 337 l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~----~~----- 407 (516)
.......+..|+.+.|.|.+.|.|.|.+.|+++|..+......... ..
T Consensus 214 -----------------------~~~~~~~~~~g~~v~l~C~~~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~~~ 270 (315)
T 1itb_B 214 -----------------------PANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANK 270 (315)
T ss_dssp -----------------------CCSEEEECCSSSCEEEEEEEEECTTSEEEEEETTEECCTTCSSEEEEEEEECCSSCG
T ss_pred -----------------------CCCCcEEEeCCCcEEEEEEEecCCCCeeEEEECCEECCcccccccccceeeeccCCC
Confidence 0112256789999999999999999999999999988654432111 11
Q ss_pred ---CCeEEEEEcCceecCC-ceEEEEEEEcCCCceeEEEEEEEe
Q psy7039 408 ---ENQTIYRNKSAKRATD-SGSYTIQLVNTVGSDSASCKVYVV 447 (516)
Q Consensus 408 ---~~~~~l~i~~~~~~~~-~g~y~c~a~n~~G~~s~s~~l~v~ 447 (516)
.....|.|.++.. .| +|.|+|.|.|..|....++.|.|.
T Consensus 271 ~~~~~~~~L~i~~v~~-~d~~G~Y~C~a~N~~G~~~~~~~l~v~ 313 (315)
T 1itb_B 271 RRSTLITVLNISEIES-RFYKHPFTCFAKNTHGIDAAYIQLIYP 313 (315)
T ss_dssp GGEEEEEEEEESSCCG-GGGTSCEEEEEECTTCCEEEEEEEECC
T ss_pred ceeEEEEEEEEeecCH-HHcCCceEEEEecCCCceeEEEEEEec
Confidence 1235899999999 99 999999999999999988888774
|
| >3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A | Back alignment and structure |
|---|
Probab=99.91 E-value=9.3e-24 Score=206.19 Aligned_cols=263 Identities=11% Similarity=0.103 Sum_probs=180.7
Q ss_pred CcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCc----CceeeEEeeCCe--e------------
Q psy7039 119 STLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSE----PFLNHGWSINGQ--V------------ 180 (516)
Q Consensus 119 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----p~~~i~W~~~~~--~------------ 180 (516)
..+..+.+.+|+.+.|.|.+. +. +.+.+.|++++. .
T Consensus 19 ~~~~~~~v~~G~~v~L~C~~~--------------------------~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~ 72 (331)
T 3u83_A 19 QVNDSMYGFIGTDVVLHCSFA--------------------------NPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGV 72 (331)
T ss_dssp --CEEEEEETTCCEEECCBCS--------------------------SCCSSCEEEEEEEEEEETTEEEEEEEEETTTEE
T ss_pred EcCCcEEEEecCCEEEeeecC--------------------------CCCCCCceEEEEEEEcCCCCCceEEEEeccCCC
Confidence 566678999999999999998 54 566789998431 1
Q ss_pred -e--ccCCceEEe-ecCCeeEEEeccCCCCCCeeEEEE-EEcCCCceEEEEEeeceee---------eeccccCC---ce
Q psy7039 181 -C--QIGGRADVQ-TTKSETVLDIPFCSRSDTGHYSLT-LENNLGTATASAHVTGTEF---------TDNNVHEG---KA 243 (516)
Q Consensus 181 -~--~~~~~~~~~-~~~~~~~l~i~~~~~~d~g~Y~c~-~~~~~g~~~~~~~~~~~~~---------~~~~l~~g---~~ 243 (516)
+ ....|+.+. ......+|.|.+++.+|+|.|+|. +.+..+.......+.+... ....+.+| +.
T Consensus 73 ~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~~~g~~~~~ 152 (331)
T 3u83_A 73 SVLAPYRERVEFLRPSFTDGTIRLSRLELEDEGVYICEFATFPTGNRESQLNLTVMAKPTNWIEGTQAVLRAKKGQDDKV 152 (331)
T ss_dssp EECTTCTTTEEESSCSSSBCCEEECSCCGGGCEEEEEEEEEETTEEEEEEEEEEEEBCCEEEEEECSSCEEECTTCCCCE
T ss_pred CcCcccCCceEecccCCCCceEEEcccCcccCcEEEEEEEecCCCccEEEEEEEEecCCcceeecCCCceeecCCCccce
Confidence 1 112444443 233456899999999999999998 4444555444443332211 11234566 77
Q ss_pred EEEEEEEEccCCCCCceeccccc-ccceEEEEEec------ceeeEEEccCCCCCceEEEEEEEecCCCcceeEEEEEec
Q psy7039 244 YEYRVSAVNAAGTEKPKISLDAL-IGKRIKEFVTS------TTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVS 316 (516)
Q Consensus 244 ~~~~~~~~~~~g~p~p~i~W~~~-~~~~~~~~~~~------~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~~~~l~v~~ 316 (516)
+.+.|.+. .|.|.|.+.|.+. .+......... ....|.|..+...|.|.|+|.|.|..|..+..+.|.|..
T Consensus 153 ~~l~C~~~--~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~l~V~~ 230 (331)
T 3u83_A 153 LVATCTSA--NGKPPSVVSWETRLKGEAEYQEIRNPNGTVTVISRYRLVPSREAHQQSLACIVNYHMDRFKESLTLNVQY 230 (331)
T ss_dssp EEEEEEEE--EEBSCCEEEEEESSCCEEEEEEEECTTSCEEEEEEEEECCCGGGTTCEEEEEEEETTEEEEEEEECCEEE
T ss_pred EEEEEEec--CCcCCceEEEEcCCCCccccceeECCCCcEEEEEEEEEEeccccCCCEEEEEEecCCCcceeeEEEEEec
Confidence 99999732 6789999999753 11111111111 124678888899999999999999988877777777765
Q ss_pred CCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeeecCCc-eEEEECCee
Q psy7039 317 KPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPT-PIWTVNGDE 395 (516)
Q Consensus 317 ~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~-i~W~~~~~~ 395 (516)
+|..... ......+..|+.+.|.|.+.|.|.+. +.|++++..
T Consensus 231 ~P~~~~~-------------------------------------~~~~~~~~~g~~~~l~C~~~g~p~p~~i~W~~~~~~ 273 (331)
T 3u83_A 231 EPEVTIE-------------------------------------GFDGNWYLQRMDVKLTCKADANPPATEYHWTTLNGS 273 (331)
T ss_dssp EEEEEEE-------------------------------------CCCSCCBTTCCCEEEEEEEEEESCCCEEEEEETTBS
T ss_pred CCeEEEe-------------------------------------cCCCceEeCCCeEEEEEeCcCCCCCCEEEEEECCCc
Confidence 5432100 11223456899999999999999998 999999987
Q ss_pred cCCCCceEEEEcCCeEEEEEc-CceecCCceEEEEEEEcCCCceeEEEEEEEecCCCCC
Q psy7039 396 VSPDGRIKFETSENQTIYRNK-SAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPP 453 (516)
Q Consensus 396 l~~~~~~~~~~~~~~~~l~i~-~~~~~~~~g~y~c~a~n~~G~~s~s~~l~v~~~p~~P 453 (516)
+.... .. .. ..|.|. ++.. .|.|.|+|.|.|..|..+.++.|.|...+...
T Consensus 274 ~~~~~--~~--~~--~~L~i~~~v~~-~d~G~Y~C~a~N~~G~~~~~~~l~V~~~~~~~ 325 (331)
T 3u83_A 274 LPKGV--EA--QN--RTLFFKGPINY-SLAGTYICEATNPIGTRSGQVEVNITEAAALE 325 (331)
T ss_dssp CCTTE--EE--ET--TEEEECSCCCG-GGCEEEEEEEEETTEEEEEEEEECCBC-----
T ss_pred ccccc--ee--cC--cEEEEeCCCcc-ccCeEEEEEEEeccccceEEEEEEEeccchhh
Confidence 75432 11 11 369999 8999 99999999999999999999999998776544
|
| >1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A | Back alignment and structure |
|---|
Probab=99.91 E-value=2e-23 Score=208.12 Aligned_cols=289 Identities=17% Similarity=0.178 Sum_probs=195.9
Q ss_pred CCccccCcccceEE---ecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccC--Cce
Q psy7039 113 APRIDRSTLNDVKI---KAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIG--GRA 187 (516)
Q Consensus 113 ~p~~~~~~~~~~~v---~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~--~~~ 187 (516)
+|.|. ..+....+ .+|+.+.|.|.+. +.|.+.+.|++++..+... .++
T Consensus 4 ~P~~~-~~p~~~~~~~~~~g~~v~l~C~~~--------------------------g~p~~~v~W~k~g~~~~~~~~~~~ 56 (382)
T 1cs6_A 4 GPVFE-EQPAHTLFPEGSAEEKVTLTCRAR--------------------------ANPPATYRWKMNGTELKMGPDSRY 56 (382)
T ss_dssp EEEEE-ECCCCEEEETTCSCCEEEECCEEE--------------------------EESCCEEEEEETTEECCCSTTSSE
T ss_pred CCEEE-ECCCcEEEecCCCCCcEEEEEEec--------------------------CCCCCEEEEEECCEECCcCCCccE
Confidence 55665 44455555 6899999999999 8999999999999988754 344
Q ss_pred EEeecCCeeEEEeccCCC-CCCeeEEEEEEcCCCceEE---EEEeece-e-----eeeccccCCceEEEEEEEEccCCCC
Q psy7039 188 DVQTTKSETVLDIPFCSR-SDTGHYSLTLENNLGTATA---SAHVTGT-E-----FTDNNVHEGKAYEYRVSAVNAAGTE 257 (516)
Q Consensus 188 ~~~~~~~~~~l~i~~~~~-~d~g~Y~c~~~~~~g~~~~---~~~~~~~-~-----~~~~~l~~g~~~~~~~~~~~~~g~p 257 (516)
.+ . ...|.|.++.. +|+|.|+|.+.|..|.... .+.+... . .....+.+|+.+.+.|.+ ..+.|
T Consensus 57 ~~--~--~~~L~i~~~~~~~D~G~Y~C~a~n~~g~~~s~~~~l~v~~~~~~~~~~~~~~~v~~G~~v~l~C~~--~~~~p 130 (382)
T 1cs6_A 57 RL--V--AGDLVISNPVKAKDAGSYQCVATNARGTVVSREASLRFGFLQEFSAEERDPVKITEGWGVMFTCSP--PPHYP 130 (382)
T ss_dssp EE--E--TTEEEEESCCHHHHCEEEEEEEEETTEEEECCCEEEEEEEECCCCSSCCCCEEEETTSCEEECCCC--CSEES
T ss_pred Ee--e--CCeEEEecccccccCEEEEEEEEcCCcEEEecceEEEeeccccccccCCCceEEecCCcEEEEeCC--CCCCC
Confidence 33 2 24799999997 9999999999998875422 2222111 1 122346789999999975 24567
Q ss_pred Cceecccccccc-----eEEEEEecceeeEEEccCCCCCceEEEEEEEecCCCcce-----eEEEEEecCCCCCCCCcee
Q psy7039 258 KPKISLDALIGK-----RIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMA-----DIEVVVVSKPGPPTGPIDY 327 (516)
Q Consensus 258 ~p~i~W~~~~~~-----~~~~~~~~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~-----~~~l~v~~~p~~p~~p~~~ 327 (516)
.+.+.|.+.... ..........+.|.|.++...|+|.|+|.+.|..|.... ...+.+.........|
T Consensus 131 ~~~i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~s~~~~l~v~~~~~~~~~P--- 207 (382)
T 1cs6_A 131 ALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAP--- 207 (382)
T ss_dssp CCEEEEEESSTTCBCCCCSSEEECTTTCCEEESSCCGGGCEEEEEEEEEEETTEEEEEECCCEEEEEESCCCCCEEE---
T ss_pred CcEEEEEECCCccccccCceEEEecCceEEEEEeeCcccCeeEEEEEEEccccccceeEccceeeccchhhcccCCC---
Confidence 889999652211 111223345578999999999999999999998754322 2334433211000000
Q ss_pred eeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEEEEc
Q psy7039 328 TTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETS 407 (516)
Q Consensus 328 ~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~ 407 (516)
.+.- ..+....+..|+.+.|.|.+.|.|.+.+.|++++..+... ..
T Consensus 208 --------~~~~--------------------~~~~~~~~~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~------~~ 253 (382)
T 1cs6_A 208 --------SIKA--------------------KFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSK------WL 253 (382)
T ss_dssp --------EEEE--------------------CCCSEEEEETTCCEEEECEEEEESCCEEEEEECCSCCSCC------CS
T ss_pred --------ceec--------------------cCCCceEEeCCCeEEEEEEEccCCCCEEEEEECCcccccE------Ee
Confidence 0000 1224567889999999999999999999999988765321 12
Q ss_pred CCeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEEEEecCCCCCCCCcccccccCCeEEEEee
Q psy7039 408 ENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQGPLDVSDITPESCSLSWK 472 (516)
Q Consensus 408 ~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~v~~~p~~P~~~l~~~~~~~~~~~l~W~ 472 (516)
.....|.|.++.. .|.|.|+|.|.|..|.......|.|..+|.............++.+.|.+.
T Consensus 254 ~~~~~L~i~~~~~-~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~ 317 (382)
T 1cs6_A 254 SSEPLLHIQNVDF-EDEGTYECEAENIKGRDTYQGRIIIHAQPDWLDVITDTEADIGSDLRWSCV 317 (382)
T ss_dssp BSSSEEEECSCCG-GGCEEEEEEEEETTEEEEEEEEEEEEEEEEEEECCCCEEEETTCCEEEECE
T ss_pred cCCcEEEEccCCh-hhCEEEEEEEEcCCCeEEEEEEEEEecCCCcccCCCccEEcCCCeEEEEEE
Confidence 2345799999999 999999999999999988888898876654221111122234556666664
|
| >2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.91 E-value=3.7e-22 Score=207.69 Aligned_cols=299 Identities=9% Similarity=0.081 Sum_probs=187.6
Q ss_pred cEEEeCCCcCCCeEEEEEEEecCCCCCCCCCCCcceEeccCCCCCccccCcccceEEecCCeEEEEEeeeeccccccCcc
Q psy7039 70 TSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPL 149 (516)
Q Consensus 70 ~~~~i~~l~~~~~y~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~ 149 (516)
..|.|.+++..|.|.|+|.|.|..|...... . .........+|.+. .......+.+|+.+.|.|.+.
T Consensus 178 s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~-~-~~~~~~~~~~P~v~-~~~~~~~~~~G~~~~l~C~~~---------- 244 (523)
T 2rcj_C 178 SYLSLTPEQWKSHRSYSCQVTHEGSTVEKTV-A-PTECSASTKGPSVF-PLAPSSKSTSGGTAALGCLVK---------- 244 (523)
T ss_pred EEEEEechhcCCCceEEEEEEecCcccccce-e-eeecCCCCcCCEEE-ecCCCcccccCCceEEEEEEe----------
Confidence 3689999999999999999999876533211 1 11111223455554 222234567999999999998
Q ss_pred ccccccccCccceeecCc-Cce-eeEEeeCCeeeccCCceEEeecCC----eeEEEeccCCCCCCeeEEEEEEcCCCceE
Q psy7039 150 RALGVRANSTKGWVKLSE-PFL-NHGWSINGQVCQIGGRADVQTTKS----ETVLDIPFCSRSDTGHYSLTLENNLGTAT 223 (516)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~-p~~-~i~W~~~~~~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~ 223 (516)
+. |.+ .++|++++..+.......+...++ .+.|.|.+++.+| |.|+|.+.|..|...
T Consensus 245 ----------------g~~P~p~~v~W~k~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~g~~~ 307 (523)
T 2rcj_C 245 ----------------DYFPQPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTK 307 (523)
T ss_pred ----------------ceeCCCeEEEEecCCcccceEeCCcEecCCCcEEEEEEEEechhhcCC-ceEEEEEEeCCCCcc
Confidence 65 766 899999987654211111111111 3589999999999 999999999998865
Q ss_pred EEEEeece---e-e----eecc-ccCCceEEEEEEEEccCCCCC----ceecccccccc-----eEEE-EEe----ccee
Q psy7039 224 ASAHVTGT---E-F----TDNN-VHEGKAYEYRVSAVNAAGTEK----PKISLDALIGK-----RIKE-FVT----STTA 280 (516)
Q Consensus 224 ~~~~~~~~---~-~----~~~~-l~~g~~~~~~~~~~~~~g~p~----p~i~W~~~~~~-----~~~~-~~~----~~~~ 280 (516)
....+... . + .... +.+|+.+.|.|.+ .|.++ +.+.|.+.... .... ... ....
T Consensus 308 ~~~~l~v~~~P~~~~~~p~~~~~v~~g~~~~l~C~~---~g~~p~~~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s 384 (523)
T 2rcj_C 308 VDKRVEPLSLPSVFLFPPKPKDTLMISRTPEVTCVV---VDVSHEDPQVKFNWYVDGVQVHNAKTKPREQQYNSTYRVVS 384 (523)
T ss_pred eEEecCCCcCceEEecCCCchhhcccCCceEEEEEE---ecccCCCCceEEEEEECCeEccCCccCCceecCCCcEEEEE
Confidence 55443211 1 1 1122 6789999999999 56443 58999652111 0000 000 1124
Q ss_pred eEEEccCCCCCceEEEEEEEecCCCcceeEEEEEec-CCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccc
Q psy7039 281 SLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVS-KPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSD 359 (516)
Q Consensus 281 ~l~i~~l~~~d~g~y~c~a~n~~g~~~~~~~l~v~~-~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~ 359 (516)
.|.|.++..+|+|.|+|.|.|..+.......+.+.. ...+|. +.+.
T Consensus 385 ~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~~~~~~~~~P~--v~~~------------------------------- 431 (523)
T 2rcj_C 385 VLTVLHQNWLDGKEYKCKVSNKALPAPIEKTISKAKGQPREPQ--VYTL------------------------------- 431 (523)
T ss_pred EEEECHHHhcCCCeEEEEEeCCCCCCceeEEEEcccCCCCCCE--EEEe-------------------------------
Confidence 588999999999999999999877765444444311 111110 0000
Q ss_pred cccccEEEEcCCeEEEEEEEeeecCC--ceEEEECCeecCCCCceEEEEcCCe-----EEEEEcCceecCCceEEEEEEE
Q psy7039 360 LSIRDMTVLAGEEFTITVPFSGRPKP--TPIWTVNGDEVSPDGRIKFETSENQ-----TIYRNKSAKRATDSGSYTIQLV 432 (516)
Q Consensus 360 ~~~~~~~v~~g~~~~l~C~~~g~p~~--~i~W~~~~~~l~~~~~~~~~~~~~~-----~~l~i~~~~~~~~~g~y~c~a~ 432 (516)
......+..| .+.|.|.+.|.+++ .+.|+++|..+............+. ..|.|..... .|.|.|+|.|.
T Consensus 432 -~~~~~~~~~~-~~~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~gt~~~~~~l~v~~~~~-~~~g~Y~C~a~ 508 (523)
T 2rcj_C 432 -PPSREEMTKN-QVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRW-QQGNVFSCSVM 508 (523)
T ss_pred -CCChHHccCC-ceEEEEEEEeeECCCCEEEEEECCEECCCeeeccceeCCCCCEEEEEEEEEChHHc-cCCCeEEEEEE
Confidence 0011123334 49999999998776 8999999988754322222112211 3456666666 77999999999
Q ss_pred cCCCc
Q psy7039 433 NTVGS 437 (516)
Q Consensus 433 n~~G~ 437 (516)
|....
T Consensus 509 n~~l~ 513 (523)
T 2rcj_C 509 HEALH 513 (523)
T ss_pred cCCcC
Confidence 98643
|
| >4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* | Back alignment and structure |
|---|
Probab=99.91 E-value=3.4e-24 Score=211.06 Aligned_cols=269 Identities=16% Similarity=0.138 Sum_probs=158.0
Q ss_pred CcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcC-----------ceeeEEeeCCeeec----c
Q psy7039 119 STLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEP-----------FLNHGWSINGQVCQ----I 183 (516)
Q Consensus 119 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-----------~~~i~W~~~~~~~~----~ 183 (516)
.....+.+.+|+.+.|.|.+. +.| .+.+.|++++.... .
T Consensus 12 ~~~~~v~v~~G~~v~L~C~~~--------------------------~~p~~~~ys~~~~~~~~i~W~k~~~~~~~~~~~ 65 (349)
T 4dep_C 12 DTMRQIQVFEDEPARIKCPLF--------------------------EHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPI 65 (349)
T ss_dssp CCCCCCEEETTSCEEEECTCC--------------------------CCCSSSCHHHHHHTTCEEEEEEEESSCCCEEEC
T ss_pred ceeeeEEEecCCeEEEEcccc--------------------------ccccccccccccCCCceEEEEECCCCCcccccc
Confidence 345568899999999999998 654 48999999874211 0
Q ss_pred ---CCceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEEeeceee-----------eeccccCCceEEEEEE
Q psy7039 184 ---GGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVTGTEF-----------TDNNVHEGKAYEYRVS 249 (516)
Q Consensus 184 ---~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~~~~~~-----------~~~~l~~g~~~~~~~~ 249 (516)
....++... ...|.|.+++.+|+|.|+|.+.|..+.......+.+... ....+..|....+.|.
T Consensus 66 ~~~~~~~~~~~~--~~~L~i~~~~~~D~G~Y~C~a~n~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~ 143 (349)
T 4dep_C 66 NFRLPENRISKE--KDVLWFRPTLLNDTGNYTCMLRNTTYCSKVAFPLEVVQKDSCFNSPMKLPVHKLYIEYGIQRITCP 143 (349)
T ss_dssp CCCCGGGCEEEE--TTEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEECCCTTSCCSCCCCEEEEETTCSEEEEECC
T ss_pred cccccCceEeec--CCEEEEccCChhhCEEEEEEEecCCceEEEEEEEEEecCCcccCcccccCcceeeecCccEEEEcC
Confidence 011222212 348999999999999999999998887765554433221 1234568999999997
Q ss_pred EEcc--CCCCCceecccccc---cceEEEEEecceeeEEEccCCCCCceEEEEEEEecC-CCc---ceeEEEEEecCCCC
Q psy7039 250 AVNA--AGTEKPKISLDALI---GKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDY-GID---MADIEVVVVSKPGP 320 (516)
Q Consensus 250 ~~~~--~g~p~p~i~W~~~~---~~~~~~~~~~~~~~l~i~~l~~~d~g~y~c~a~n~~-g~~---~~~~~l~v~~~p~~ 320 (516)
+... .|.|.|.+.|.+.. ..+..+ ......|.|.++..+|+|.|+|.|.|.. |.. ...+.+.|...+..
T Consensus 144 ~~~~~~~g~p~~~v~W~k~~~~l~~~~~~--~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~g~~~~~~~~~~l~v~~~~~~ 221 (349)
T 4dep_C 144 NVDGYFPSSVKPTITWYMGCYKIQNFNNV--IPEGMNLSFLIALISNNGNYTCVVTYPENGRTFHLTRTLTVKVVGSPKN 221 (349)
T ss_dssp SCTTSSCTTSCCEEEEEETTEECCSCSSE--EEETTEEEEESCCGGGCEEEEEEEEEEETTEEEEEEEEEEEEEECCGGG
T ss_pred CCcccccCCCCceEEEeeCCEECCCccce--eecCCEEEEeeeeecCCcEEEEEEEEeeCCEEEEEEEEEEEEEEccCCC
Confidence 6443 67899999996521 111111 1223679999999999999999999987 443 45666666654321
Q ss_pred CCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEe----eecCCceEEEECCeec
Q psy7039 321 PTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFS----GRPKPTPIWTVNGDEV 396 (516)
Q Consensus 321 p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~----g~p~~~i~W~~~~~~l 396 (516)
...|..... .......+..|+.+.|.|.+. |.|.+.+.|++++..+
T Consensus 222 ~~~p~i~~~------------------------------~~~~~~~v~~G~~v~l~C~~~~~~~g~p~p~v~W~~~g~~l 271 (349)
T 4dep_C 222 AVPPVIHSP------------------------------NDHVVYEKEPGEELLIPCTVYFSFLMDSRNEVWWTIDGKKP 271 (349)
T ss_dssp CCSCEEC----------------------------------------------CCCEEEEECCCTTCCCEEEEESSCC--
T ss_pred CCCCeEecC------------------------------CCceeEEEecCCcEEEEEEEEEccCCCCCCEEEEEECCEEc
Confidence 111111000 000112678999999999998 4688899999999877
Q ss_pred CC-CCceEEEE------cC---CeEEEEEcCceecCCc-eEEEEEEEcCCCceeEEEEEEEec
Q psy7039 397 SP-DGRIKFET------SE---NQTIYRNKSAKRATDS-GSYTIQLVNTVGSDSASCKVYVVD 448 (516)
Q Consensus 397 ~~-~~~~~~~~------~~---~~~~l~i~~~~~~~~~-g~y~c~a~n~~G~~s~s~~l~v~~ 448 (516)
.. ..++.... .. ....|.|.++.. .|. |.|+|.|.|..|....++.|.|..
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~-~d~~G~Y~C~a~N~~G~~~~~~~l~v~~ 333 (349)
T 4dep_C 272 DDITIDVTINESISHSRTEDETRTQILSIKKVTS-EDLKRSYVCHARSAKGEVAKAAKVKQKV 333 (349)
T ss_dssp ------CCCCEEEECCTTCCEEEEECC--------------CEEEEECSSCEEEEECC-----
T ss_pred cccCCccccccceeeecCCCcEEEEEEEEeeccH-HHcCCcEEEEEEcCCCcEEEEEEEeeec
Confidence 54 22222210 01 124599999999 999 999999999999998888888853
|
| >2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=2.2e-23 Score=208.27 Aligned_cols=294 Identities=16% Similarity=0.200 Sum_probs=193.9
Q ss_pred CCccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEee-CCeeeccCCceEEee
Q psy7039 113 APRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSI-NGQVCQIGGRADVQT 191 (516)
Q Consensus 113 ~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~-~~~~~~~~~~~~~~~ 191 (516)
+|.|...+...+.+.+|+.+.|.|.+. |.|.+.+.|++ ++..+....+.....
T Consensus 3 ~P~f~~~p~~~~~~~~G~~v~l~C~~~--------------------------g~p~p~v~W~k~~g~~~~~~~~~~~~~ 56 (388)
T 2v5m_A 3 GPVFLKEPTNRIDFSNSTGAEIECKAS--------------------------GNPMPEIIWIRSDGTAVGDVPGLRQIS 56 (388)
T ss_dssp EEEEEECCCSEEEEETTTCEEEECEEE--------------------------EESCCEEEEEETTSCBCCCBTTTBEEC
T ss_pred CCchhhCCCceEEEEcCccEEEEEECC--------------------------CCCCCEEEEEcCCCCccccCCCceEEc
Confidence 455553444457788999999999999 99999999999 777776544333322
Q ss_pred cCCeeEEEeccCCCCC------CeeEEEEEEcCCCceE-EEEEeece-------eeeeccccCCceEEEEEEEEccCCCC
Q psy7039 192 TKSETVLDIPFCSRSD------TGHYSLTLENNLGTAT-ASAHVTGT-------EFTDNNVHEGKAYEYRVSAVNAAGTE 257 (516)
Q Consensus 192 ~~~~~~l~i~~~~~~d------~g~Y~c~~~~~~g~~~-~~~~~~~~-------~~~~~~l~~g~~~~~~~~~~~~~g~p 257 (516)
...+|.|.+++.+| +|.|+|.+.|..|... ..+.+... ......+.+|+.+.|.|.+....+.+
T Consensus 57 --~~~~L~i~~~~~~d~~~~~d~G~Y~C~a~n~~g~~~s~~~~v~v~~~p~~~~~~~~~~v~~G~~v~l~C~~~~~~~~~ 134 (388)
T 2v5m_A 57 --SDGKLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNKEHVIRGNSAVIKCLIPSFVADF 134 (388)
T ss_dssp --STTEEEECCCCGGGCCHHHHEEEEEEEEEETTEEEECCCEEEEEECCCCCCCBCCCEEEETTSCEEECCBCCTTTTTT
T ss_pred --CCceEEecccChhhccccccCceEEEEEEccCCeEEecceEEEEccccccccCccceeeecCCcEEEEEECcCCCCCC
Confidence 33479999999987 9999999999887642 22222211 11234567899999999873222223
Q ss_pred CceecccccccceE-------EEEEecceeeEEEccCCCCCc-eEEEEEEEecCCCcce----eEEEEEecCCCC--CCC
Q psy7039 258 KPKISLDALIGKRI-------KEFVTSTTASLNIKNSVRKDS-GIYKIEAKNDYGIDMA----DIEVVVVSKPGP--PTG 323 (516)
Q Consensus 258 ~p~i~W~~~~~~~~-------~~~~~~~~~~l~i~~l~~~d~-g~y~c~a~n~~g~~~~----~~~l~v~~~p~~--p~~ 323 (516)
.+.+.|.+...... ........+.|.|.+++.+|. |.|+|.+.|..+.... ...+.|..+... |..
T Consensus 135 ~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~~G~Y~C~~~n~~~~~~~~~~~~~~l~v~~~~~~~~p~~ 214 (388)
T 2v5m_A 135 VEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRT 214 (388)
T ss_dssp EEEEEEEETTCCEECSSSCBTTTEEECTTSCEEESSCCGGGGGCCEEEEEEETTTCCEEECSSCBCEEEECCCSCEEEEC
T ss_pred cceEEEEeCCCcccccccCCCCcEEEccCCcEEEecCCccccCeeEEEEeccCCCCceeeccccceEEEecCCcCCCCcC
Confidence 47899975322110 001123456899999999999 9999999998644221 124444432110 000
Q ss_pred CceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeeecCCceEEEECCeec------C
Q psy7039 324 PIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEV------S 397 (516)
Q Consensus 324 p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l------~ 397 (516)
+ ........+..|+.+.|.|.+.|.|.+.+.|++++..+ .
T Consensus 215 ~----------------------------------~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~ 260 (388)
T 2v5m_A 215 P----------------------------------ALVQKPLELMVAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVV 260 (388)
T ss_dssp C----------------------------------SSCCCCEEEETTSCEEECCCCEEESCCEEEEEEECTTSSCEEECC
T ss_pred c----------------------------------cccCCceEEeeCCcEEEEEECCCCCCCEEEEEecCCCCccccccc
Confidence 0 00122346789999999999999999999999975432 1
Q ss_pred CCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEEEEecCCCCCCCCcccccccCCeEEEEeeC
Q psy7039 398 PDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQGPLDVSDITPESCSLSWKP 473 (516)
Q Consensus 398 ~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~v~~~p~~P~~~l~~~~~~~~~~~l~W~~ 473 (516)
...++... ...|.|.++.. .|.|.|+|.|.|..|..+..+.|.|..+|.....+.......++.+.|.+..
T Consensus 261 ~~~~~~~~----~~~L~i~~v~~-~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~v~~g~~~~l~C~~ 331 (388)
T 2v5m_A 261 LNDRVKQV----SGTLIIKDAVV-EDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQY 331 (388)
T ss_dssp CSSSEEEE----TTEEEESSCCG-GGCEEEEEEEECSSCEEEEEEEEEEEEEEEEEEESSEEEECTTSCEEEEEEE
T ss_pred ccCceecc----cCEEEECcCCH-HHCeEEEEEEecCCCceeEEEEEEEeCCCccccCCCcEEecCCCCEEEEEEe
Confidence 22333221 23799999999 9999999999999999888888988865532111112222345666666653
|
| >3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=2.7e-24 Score=210.88 Aligned_cols=278 Identities=15% Similarity=0.140 Sum_probs=189.5
Q ss_pred CCccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeee--ccCCceEEe
Q psy7039 113 APRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVC--QIGGRADVQ 190 (516)
Q Consensus 113 ~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~--~~~~~~~~~ 190 (516)
.|.+. ..+..+.+.+|+.+.|.|.+.+ |. + | ..+.|.+.+.|++++..+ ....+.++.
T Consensus 18 ~p~~~-~~~~~~~v~~G~~v~L~C~~~~---~~--~-------------~-~~~~p~~~v~W~k~~~~~~~~~~~~~~~~ 77 (339)
T 3o4o_C 18 CRFRG-RHYKREFRLEGEPVALRCPQVP---YW--L-------------W-ASVSPRINLTWHKNDSARTVPGEEETRMW 77 (339)
T ss_dssp CEEEE-ECSCCEEEETTBCCEEECTTSC---SS--C-------------C-STTSSCCBCCCEESSCCSCCSCCSSSCEE
T ss_pred hHhhC-cCceEEEEECCccEEEEecccc---cc--c-------------c-ccCCCCceEEEEECCCCcccCccccccEE
Confidence 45555 5667889999999999999850 00 0 0 004677899999998774 322122332
Q ss_pred ecCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEEeeceee---------eeccccCCceEEEEEEEEc--cCCCCCc
Q psy7039 191 TTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVTGTEF---------TDNNVHEGKAYEYRVSAVN--AAGTEKP 259 (516)
Q Consensus 191 ~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~~~~~~---------~~~~l~~g~~~~~~~~~~~--~~g~p~p 259 (516)
.. ..+|.|.+++.+|+|.|+|.+.|..|.......+.+... ....+..|..+.|.|.+.. ..|.|.+
T Consensus 78 ~~--~~~L~i~~v~~~D~G~Y~C~~~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~g~p~~ 155 (339)
T 3o4o_C 78 AQ--DGALWLLPALQEDSGTYVCTTRNASYCDKMSIELRVFENTDAFLPFISYPQILTLSTSGVLVCPDLSEFTRDKTDV 155 (339)
T ss_dssp EE--TTEEEESSBCTTCCEEEECCEEETTEEEEEEEEEEEECSCGGGHHHHCEEEEEETTSCEEEECCSCTTTCCSSSCC
T ss_pred ee--CCeEEECCCCcccCEEEEEEEECCcceEEEEEEEEEEcCCCccccccccceEEECCCCEEEEecCCcccccCCCCc
Confidence 22 348999999999999999999998876665554443221 1235678999999998322 2788999
Q ss_pred eecccccc----cceEEEEEecceeeEEEccCCCCCceEEEEEEEecCCC----cceeEEEEEecCCCCCCCCceeeecc
Q psy7039 260 KISLDALI----GKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGI----DMADIEVVVVSKPGPPTGPIDYTTVT 331 (516)
Q Consensus 260 ~i~W~~~~----~~~~~~~~~~~~~~l~i~~l~~~d~g~y~c~a~n~~g~----~~~~~~l~v~~~p~~p~~p~~~~~~~ 331 (516)
.+.|.+.. ..............|.|.++..+|.|.|+|.|.|..|. ....+.|.|...+... .|..+
T Consensus 156 ~v~W~k~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~~~~~l~V~~~~~~~-~P~i~---- 230 (339)
T 3o4o_C 156 KIQWYKDSLLLDKDNEKFLSVRGTTHLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKKKEET-IPVII---- 230 (339)
T ss_dssp CBCCEESSCBCCTTCSSEEECTTSSEEEESSCCGGGCEEEEEEEECCBTTBCCEEEEEEEEEEECCCCCC-CCEEC----
T ss_pred eEEEecCCeeCCCCCceeEEcCCcceEEEcccCHhhCeEEEEEEEECCCCeEEEEEEEEEEEEEcCCCCC-CCEEe----
Confidence 99996521 11112222334468999999999999999999998874 3456677776543211 11100
Q ss_pred CCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEE---eeec-CCceEEEECCeecCC---------
Q psy7039 332 PESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPF---SGRP-KPTPIWTVNGDEVSP--------- 398 (516)
Q Consensus 332 ~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~---~g~p-~~~i~W~~~~~~l~~--------- 398 (516)
..+....+..|+.+.|.|.+ .|.| .+.+.|++++..+..
T Consensus 231 ----------------------------~~~~~~~v~~G~~v~L~C~~~~~~g~P~~~~v~W~~~g~~~~~~~~~~~~~~ 282 (339)
T 3o4o_C 231 ----------------------------SPLKTISASLGSRLTIPCKVFLGTGTPLTTMLWWTANDTHIESAYPGGRVTE 282 (339)
T ss_dssp ----------------------------CCSCCCCCCCCSCCCCCCCEEESSSCCSSCEEEEESSSSCSSSSSCSSSCEE
T ss_pred ----------------------------cCCceeEeccCCCEEEEEEEECCCCCCCCceEEEEECCeeccccccccccee
Confidence 11234467789999999999 8999 789999999876532
Q ss_pred CCceEEEEcCC---eEEEEEcCceecCCc-eEEEEEEEcCCCceeEEEEEEE
Q psy7039 399 DGRIKFETSEN---QTIYRNKSAKRATDS-GSYTIQLVNTVGSDSASCKVYV 446 (516)
Q Consensus 399 ~~~~~~~~~~~---~~~l~i~~~~~~~~~-g~y~c~a~n~~G~~s~s~~l~v 446 (516)
+.++.....+. ...|.|.++.. .|. |.|+|.|.|..|..+..+.+.+
T Consensus 283 ~~~~~~~~~g~~~~~~~L~i~~v~~-~d~~G~Y~C~a~N~~G~~~~~~~~~~ 333 (339)
T 3o4o_C 283 GPRQEYSENNENYIEVPLIFDPVTR-EDLHMDFKCVVHNTLSFQTLRTTVKE 333 (339)
T ss_dssp CCCEECCCSSSCEEEECCEECSSCC-CSCCCCCEEEEEETTEEECCBCCCCC
T ss_pred cceEEecccCceEEEEEEEEEEech-hhcCccEEEEEEeccCceEEEEEhhH
Confidence 12222222222 12699999999 997 9999999999999877665544
|
| >3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R | Back alignment and structure |
|---|
Probab=99.90 E-value=1.9e-25 Score=243.57 Aligned_cols=309 Identities=16% Similarity=0.203 Sum_probs=0.0
Q ss_pred CcEEEeCCCcCCCeEEEEEEEecCCCCCCCCCCCcceEeccCCCCCccccC--cccceEEecCCeEEEEEeeeecccccc
Q psy7039 69 ETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAPRIDRS--TLNDVKIKAGQSFSFDVKEFRELSYTK 146 (516)
Q Consensus 69 ~~~~~i~~l~~~~~y~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~p~~~~~--~~~~~~v~~g~~~~l~C~~~~~~~~~~ 146 (516)
...|.|.+++..|.|.|+|.|.|..|....+. ...+.+. .+|.+... ......+.+|+.+.|.|.+.
T Consensus 380 ~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~s~-~~~l~v~---~~P~~~~~~~~~~~~~~~~g~~~~l~C~~~------- 448 (772)
T 3v2a_R 380 GHVLTIMEVSERDTGNYTVILTNPISKEKQSH-VVSLVVY---VPPQIGEKSLISPVDSYQYGTTQTLTCTVY------- 448 (772)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ceeEEEecCChhcCceEEEEEEECCcCeEEEE-EEEEEEe---cCCcccccccCCCccccCCCCcEEEEeEec-------
Confidence 47789999999999999999999887644322 2222221 34544311 11112378999999999999
Q ss_pred CccccccccccCccceeecCcCcee-eEEeeCCee--------------------------------ecc-CCceEEee-
Q psy7039 147 SPLRALGVRANSTKGWVKLSEPFLN-HGWSINGQV--------------------------------CQI-GGRADVQT- 191 (516)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~p~~~-i~W~~~~~~--------------------------------~~~-~~~~~~~~- 191 (516)
+.|.+. +.|++++.. +.. ..+..+..
T Consensus 449 -------------------g~p~p~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~ 509 (772)
T 3v2a_R 449 -------------------AIPPPHHIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVNKNQFALIEG 509 (772)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -------------------cCCCCcEEEEEEcCCccccccccccccccCcCccccccccccccCCCcEEEeccceeeccC
Confidence 888886 999986321 100 00111111
Q ss_pred -cCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEEeecee---e---eeccccCCceEEEEEEEEccCCCCCceeccc
Q psy7039 192 -TKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVTGTE---F---TDNNVHEGKAYEYRVSAVNAAGTEKPKISLD 264 (516)
Q Consensus 192 -~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~~~~~---~---~~~~l~~g~~~~~~~~~~~~~g~p~p~i~W~ 264 (516)
......|.|.++ +|+|.|+|.+.|..|.......+.+.. + ....+.+|+.+.+.|.+ .|.|.+.+.|.
T Consensus 510 ~~~~~~~L~i~~~--~d~G~Y~C~a~N~~g~~~~~~~l~V~~~p~i~~~p~~~~~~G~~v~l~C~~---~~~p~~~v~W~ 584 (772)
T 3v2a_R 510 KNKTVSTLVIQAA--NVSALYKCEAVNKVGRGERVISFHVTRGPEITLQPDMQPTEQESVSLWCTA---DRSTFENLTWY 584 (772)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cceEEEEEEEeec--ccCeEEEEEEEccccccceeEEEEEECCceeeccCCcccccCCceEEEEec---cCCCCCCcEEE
Confidence 112357788776 789999999999988776655433321 1 12346689999999998 78899999997
Q ss_pred ccccceE-----EE--------------------EEecceeeEEEccCCCCCceEEEEEEEecCCCcc--eeEEEEEe--
Q psy7039 265 ALIGKRI-----KE--------------------FVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDM--ADIEVVVV-- 315 (516)
Q Consensus 265 ~~~~~~~-----~~--------------------~~~~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~--~~~~l~v~-- 315 (516)
+...... .. ........|.|.++..+|+|.|+|.|.|..+... ....+.|.
T Consensus 585 k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~s~~~~l~v~~~ 664 (772)
T 3v2a_R 585 KLGPQPLPIHVGELPTPVCKNLDTLWKLNATMFSNSTNDILIMELKNASLQDQGDYVCLAQDRKTKKRHCVVRQLTVLER 664 (772)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EcCCcccccccCcccccccccccceeeccceeeecCCCceEEEEECCCCccCCcEEEEEEEeCCCCeEEEEEEeeccccc
Confidence 6321110 00 0011233599999999999999999999655432 23444443
Q ss_pred cCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeeecCCceEEEECCee
Q psy7039 316 SKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDE 395 (516)
Q Consensus 316 ~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~ 395 (516)
.+|... ..+.+..+..|+.+.|.|.+.|.|.|.|.|++++..
T Consensus 665 ~~P~~~--------------------------------------~~~~~~~v~~g~~~~l~C~~~g~P~p~v~W~k~g~~ 706 (772)
T 3v2a_R 665 VAPTIT--------------------------------------GNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNET 706 (772)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCEee--------------------------------------cCCCceEEeCCCCEEEEEEeCccCCCeEEEEECCeE
Confidence 222211 123446688999999999999999999999999998
Q ss_pred cCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEEEEecCCCCC
Q psy7039 396 VSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPP 453 (516)
Q Consensus 396 l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~v~~~p~~P 453 (516)
+..+.++.+. .+...|.|.++.. .|+|.|+|.|.|..|....++.|.|..+|+..
T Consensus 707 l~~~~~~~~~--~~~~~L~I~~v~~-~D~G~Y~C~a~N~~G~~~~~~~l~V~~~p~~~ 761 (772)
T 3v2a_R 707 LVEDSGIVLK--DGNRNLTIRRVRK-EDEGLYTCQACSVLGCAKVEAFFIIEGAQEKT 761 (772)
T ss_dssp ----------------------------------------------------------
T ss_pred CcCCCCeEEc--CCCcEEEECcCCH-HHCEEEEEEEEeCCcceeEEEEEEEECCCCcc
Confidence 8766554443 2346899999999 99999999999999999999999999887765
|
| >2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=2.1e-22 Score=190.29 Aligned_cols=232 Identities=16% Similarity=0.114 Sum_probs=170.1
Q ss_pred EEecCCeEEEEEeeeeccccccCccccccccccCccceeecC-cCce--eeEEeeCCeeeccCCceEEeecCCeeEEEec
Q psy7039 125 KIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLS-EPFL--NHGWSINGQVCQIGGRADVQTTKSETVLDIP 201 (516)
Q Consensus 125 ~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~p~~--~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~ 201 (516)
.+.+|+.+.|.|.+. + .|.+ .+.|++++..+.. .+...+. .|.|.
T Consensus 14 ~v~~G~~v~l~C~~~--------------------------g~~p~p~~~v~W~k~~~~l~~----~~~~~~~--~~~~~ 61 (265)
T 2oz4_A 14 VLEVDTQGTVVCSLD--------------------------GLFPVSEAQVHLALGDQRLNP----TVTYGND--SFSAK 61 (265)
T ss_dssp EEETTEEEEEEEEEE--------------------------SCSCGGGCEEEEEETTEECCC----EEEECSS--EEEEE
T ss_pred eEecCCCEEEEEEcc--------------------------CCCCCcceEEEEEeCCEECCc----eEeeCCC--eEEEE
Confidence 678999999999999 7 7766 9999999988764 2222222 45554
Q ss_pred cC---CCCCCee--EEEEEEcCCCceEEEEEeecee-------eeeccccCCceEEEEEEEEccCCCCCceecccccccc
Q psy7039 202 FC---SRSDTGH--YSLTLENNLGTATASAHVTGTE-------FTDNNVHEGKAYEYRVSAVNAAGTEKPKISLDALIGK 269 (516)
Q Consensus 202 ~~---~~~d~g~--Y~c~~~~~~g~~~~~~~~~~~~-------~~~~~l~~g~~~~~~~~~~~~~g~p~p~i~W~~~~~~ 269 (516)
.+ +..|+|. |+|.+.|..|.......+.+.. .....+.+|+.+.|.|.+ . |.|.+.|++ .
T Consensus 62 ~~~~~~~~d~g~g~Y~C~a~n~~~~~~~~~~l~V~~~p~p~~~~~~~~v~~G~~v~l~C~~---~--p~~~i~W~g---~ 133 (265)
T 2oz4_A 62 ASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNVILTKPEVSEGTEVTVKCEA---H--PRAKVTLNG---V 133 (265)
T ss_dssp EEEEECGGGCEEEEEEEEEEETTEEEEEEEEEEEECCCCCEEEESCSEEETTCEEEEEEEC---C--TTSEEEESS---C
T ss_pred eecccccccCCcceEEEEEecCCCCcEEEEEEEEeCCCCceeecCCceecCCCcEEEEEEc---c--CCCEEEECC---E
Confidence 44 7778774 9999999888776555443322 123446779999999987 3 889999922 2
Q ss_pred eEEEEEecceeeEEEccCCCCCceEEEEEEEec-CCCcc---eeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCC
Q psy7039 270 RIKEFVTSTTASLNIKNSVRKDSGIYKIEAKND-YGIDM---ADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDD 345 (516)
Q Consensus 270 ~~~~~~~~~~~~l~i~~l~~~d~g~y~c~a~n~-~g~~~---~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~ 345 (516)
.. ...+....|.|..+..+|.|.|+|.|.|. .|... ..+.|.|..+|.....
T Consensus 134 ~~--~~~~~~~~l~i~~~~~~~~g~Y~C~a~n~~~g~~~~~s~~~~l~V~~~p~~~~~---------------------- 189 (265)
T 2oz4_A 134 PA--QPLGPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDER---------------------- 189 (265)
T ss_dssp SS--SCCSSEECCEEECCGGGTTEEEEEEEEEECSSSEEEEEEEEEEEEEEEEECCGG----------------------
T ss_pred Ec--cCCCCcEEEEEccccccCCceEEEEEEcCCCCCcccccccEEEEEEeCCccccc----------------------
Confidence 21 11234567889999999999999999865 46654 5677777766654211
Q ss_pred CCCceeeccccccccccccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCce
Q psy7039 346 GGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSG 425 (516)
Q Consensus 346 ~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g 425 (516)
..+....+.+|+.+.|.|.+.|.|.+.+.|++++..+..... + ..+.. .|+|
T Consensus 190 --------------~~p~~~~v~~g~~~~l~C~~~g~P~p~i~W~~~~~~~~~~g~-----------~--~~v~~-~d~G 241 (265)
T 2oz4_A 190 --------------DCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIGE-----------S--VTVTR-DLEG 241 (265)
T ss_dssp --------------GSCSEEEEETTCEECCCCCCEEESCCEEEEEETTTEECCTTS-----------C--EECCG-GGCE
T ss_pred --------------cCCCccEEcCCCeEEEEeECccCCCCeEEEEECCcccCCCCc-----------E--EEeeh-hhCe
Confidence 123456789999999999999999999999999972221111 1 13677 9999
Q ss_pred EEEEEEEcCCCceeEEEEEEEec
Q psy7039 426 SYTIQLVNTVGSDSASCKVYVVD 448 (516)
Q Consensus 426 ~y~c~a~n~~G~~s~s~~l~v~~ 448 (516)
.|+|.|.|..|..+.++.|.|..
T Consensus 242 ~Y~C~a~N~~G~~~~~~~l~V~~ 264 (265)
T 2oz4_A 242 TYLCRARSTQGEVTREVTVNVLS 264 (265)
T ss_dssp EEEEEEEETTEEEEEEEEEEEEC
T ss_pred EEEEEEECCCCcEEEEEEEEEec
Confidence 99999999999999999998864
|
| >4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=6.1e-23 Score=196.58 Aligned_cols=267 Identities=15% Similarity=0.159 Sum_probs=178.5
Q ss_pred CCCccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEee
Q psy7039 112 LAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQT 191 (516)
Q Consensus 112 ~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~ 191 (516)
.+|.|. ..+..+.+.+|+.+.|.|.+. +. +.|++++. .+..+..
T Consensus 3 ~~P~i~-~~~~~~~v~~G~~v~L~C~~~--------------------------~~----v~W~~~~~-----~~~~~~~ 46 (292)
T 4dkd_C 3 SIPVIE-PSVPELVVKPGATVTLRCVGN--------------------------GS----VEWDGPPS-----PHWTLYS 46 (292)
T ss_dssp -CCEEE-SCCSSCEECTTCCEEEEEECS--------------------------SC----CCBCCCCC-----SSCEECC
T ss_pred CCceec-CCCCeEEEcCCCcEEEEEcCC--------------------------Cc----eEEccCCC-----CceEEec
Confidence 467776 556778999999999999998 53 88886543 2334444
Q ss_pred cCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEEeecee----e----eeccccCCceEEEEEEEEccCCCCC--cee
Q psy7039 192 TKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVTGTE----F----TDNNVHEGKAYEYRVSAVNAAGTEK--PKI 261 (516)
Q Consensus 192 ~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~~~~~----~----~~~~l~~g~~~~~~~~~~~~~g~p~--p~i 261 (516)
.+....|.|.+++.+|+|.|+|.+.|..+.......+.+.. + ....+.+|+.+.+.|.+ .+ +. +.+
T Consensus 47 ~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~l~V~~~~~~~~~~~~~~~v~~g~~v~l~C~~---~~-~~~~~~v 122 (292)
T 4dkd_C 47 DGSSSILSTNNATFQNTGTYRCTEPGDPLGGSAAIHLYVKDPARPWNVLAQEVVVFEDQDALLPCLL---TD-PVLEAGV 122 (292)
T ss_dssp BTTEEEEEESSCCGGGCSCEEECCCC----CCEEECCEECCSSCCEEESCSEEEEETTSCEECCEEE---SS-GGGGSSE
T ss_pred cCceEEEEEcccccccCEEEEEEEccCCCCcceEEEEEEcCccccccccCCeEEEcCCCcEEEeeeC---CC-CCcceeE
Confidence 55678999999999999999999998776665554333221 1 22346789999999998 55 43 779
Q ss_pred cccccccceE---EEEEecceeeEEEccCCCCCceEEEEEEEecCCCc-ceeEEEEEecCCCCCCCCceeeeccCCeeEE
Q psy7039 262 SLDALIGKRI---KEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGID-MADIEVVVVSKPGPPTGPIDYTTVTPESVSM 337 (516)
Q Consensus 262 ~W~~~~~~~~---~~~~~~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~-~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l 337 (516)
.|.+..+... ..........|.|.++...|+|.|+|.|.|..+.. +..+.|.|...+..+.. +.
T Consensus 123 ~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~~~~~p~-i~----------- 190 (292)
T 4dkd_C 123 SLVRVRGRPLMRHTNYSFSPWHGFTIHRAKFIQSQDYQCSALMGGRKVMSISIRLKVQKVIPGPPA-LT----------- 190 (292)
T ss_dssp EEEEGGGCCCCSSCCEECCSSSCCEETTCCGGGCSEEEEEECSTTSCEECCCEEEEEECCCCSSCE-EE-----------
T ss_pred EEEecCCCccccCCcccccCCceEEECCCCHHHCeEEEEEEEeCCCceeEEEEEEEEeCCCCCCCe-EE-----------
Confidence 9965322111 01112234459999999999999999999887754 34677777763321110 00
Q ss_pred EecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeeecCC-ceEEEECCeecCCCCceEEEEc--CCeEEEE
Q psy7039 338 SWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKP-TPIWTVNGDEVSPDGRIKFETS--ENQTIYR 414 (516)
Q Consensus 338 ~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~-~i~W~~~~~~l~~~~~~~~~~~--~~~~~l~ 414 (516)
..+....+..|+.+.|.|.+.+.|.+ .+.|.+++..+........... .....|.
T Consensus 191 ----------------------~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~L~ 248 (292)
T 4dkd_C 191 ----------------------LVPAELVRIRGEAAQIVCSASSVDVNFDVFLQHNNTKLAIPQQSDFHNNRYQKVLTLN 248 (292)
T ss_dssp ----------------------EESSCBCCCSSSCEEEEEEEEESSSCCEEECCBSSCCCCCCBEEEEETTEEEEEEEEE
T ss_pred ----------------------ccCCceeEecCCCEEEEEEecCCCCceEEEEeCCCcccccCccceeccceeeeEEEEE
Confidence 01122344689999999999987754 6888888876643332222111 1235799
Q ss_pred EcCceecCCceEEEEEEEcCCCceeEEEEEEEecCCCCC
Q psy7039 415 NKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPP 453 (516)
Q Consensus 415 i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~v~~~p~~P 453 (516)
|.++.. .|.|.|+|.|.|..|..+.++.|.|......+
T Consensus 249 i~~v~~-~d~G~Y~C~a~N~~g~~~~~~~l~V~~~~~~~ 286 (292)
T 4dkd_C 249 LDQVDF-QHAGNYSCVASNVQGKHSTSMFFRVVESAGNS 286 (292)
T ss_dssp ESSCCT-TSCEEEEEEEECSSCEEEEEEEECC-------
T ss_pred ECccCh-hcCeEEEEEEecCCCCceeEEEEEEeeCCCcc
Confidence 999999 99999999999999999999999998765544
|
| >3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R | Back alignment and structure |
|---|
Probab=99.89 E-value=1.4e-23 Score=228.82 Aligned_cols=314 Identities=17% Similarity=0.137 Sum_probs=88.1
Q ss_pred CCcEEEeCCCcCCCeEEEEEEEecCCCCCCCCCCCcceEeccCCCCCccccCcccceEEecCCeEEEEEeeeeccccccC
Q psy7039 68 GETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKS 147 (516)
Q Consensus 68 ~~~~~~i~~l~~~~~y~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~ 147 (516)
....|.|.+++..|.|.|+|++.+..+ ...+.... +... ...+|.+...++..+.+.+|+.+.|.|.+.
T Consensus 181 ~~~~l~i~~~~~~d~G~Y~C~~~~~~~-~~~s~~~~-~~v~-~~~~~~v~~~~~~~~~v~~G~~v~L~C~~~-------- 249 (772)
T 3v2a_R 181 SKKGFTIPSYMISYAGMVFCEAKINDE-SYQSIMYI-VVVV-GYRIYDVVLSPSHGIELSVGEKLVLNCTAR-------- 249 (772)
T ss_dssp TTTEEEEEGGGTTTCSEEEEEEEETTE-EEECCEEE-EEEE-CCCEEEEEEECCSCEEEETTCCEEEEEEEE--------
T ss_pred CCCCeEecCCChhhCeEEEEEEEECCc-eEEEEEEE-EEEe-cCccceeeeCCCCceEEecCCcEEEEEEEe--------
Confidence 467899999999999999999987533 22222122 2211 112344443455557899999999999998
Q ss_pred ccccccccccCccceeecC--cCceeeEEeeCCeeeccCCceEE--------eecCCeeEEEeccCCCCCCeeEEEEEEc
Q psy7039 148 PLRALGVRANSTKGWVKLS--EPFLNHGWSINGQVCQIGGRADV--------QTTKSETVLDIPFCSRSDTGHYSLTLEN 217 (516)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~--~p~~~i~W~~~~~~~~~~~~~~~--------~~~~~~~~l~i~~~~~~d~g~Y~c~~~~ 217 (516)
+ .+.+.+.|++++..+........ ........|.|.+++.+|+|.|+|.+.|
T Consensus 250 ------------------~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~ 311 (772)
T 3v2a_R 250 ------------------TELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASS 311 (772)
T ss_dssp ------------------ECTTCCCEEEEECC--------CEEEEC-----CCCEEEEEEEEESSCCSTTCSEEEEEEEC
T ss_pred ------------------cCCCCceeEEEecCCccCCCceeeeccccccccccceEEEEEEEECcCCcCCCeEEEEEEEc
Confidence 5 45678999998877654322211 1122456899999999999999999999
Q ss_pred CCCceEEEEEeeceee----------eeccccCCceEEEEEEEEccCCCCCceecccccccceEEEEEecceeeEEEccC
Q psy7039 218 NLGTATASAHVTGTEF----------TDNNVHEGKAYEYRVSAVNAAGTEKPKISLDALIGKRIKEFVTSTTASLNIKNS 287 (516)
Q Consensus 218 ~~g~~~~~~~~~~~~~----------~~~~l~~g~~~~~~~~~~~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~l~i~~l 287 (516)
..+.......+.+... ....+.+|+.+.+.|.+ .|.|.|.+.|.+................|.|.++
T Consensus 312 ~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~v~~G~~v~l~C~~---~~~p~~~v~W~~~g~~l~~~~~~~~~~~L~i~~v 388 (772)
T 3v2a_R 312 GLMTKKNSTFVRVHEKPFVAFGSGMESLVEATVGERVRIPAKY---LGYPPPEIKWYKNGIPLESNHTIKAGHVLTIMEV 388 (772)
T ss_dssp SSCEEEEEEEEEEECCCC--------------------------------------------------------------
T ss_pred CCcceeEEEEEEEeCCCeeEeccCCCCcEEEcCCCcEEEEEEE---eeeCCCeEEEEECCEeCCCCceEccceeEEEecC
Confidence 8886655544333211 12346789999999988 7889999999752211110001114578999999
Q ss_pred CCCCceEEEEEEEecCCCcc--eeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccE
Q psy7039 288 VRKDSGIYKIEAKNDYGIDM--ADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDM 365 (516)
Q Consensus 288 ~~~d~g~y~c~a~n~~g~~~--~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~ 365 (516)
...|+|.|+|.|.|..|... ..+.|.|..+|...... ......
T Consensus 389 ~~~d~G~Y~C~a~n~~g~~~~s~~~~l~v~~~P~~~~~~-----------------------------------~~~~~~ 433 (772)
T 3v2a_R 389 SERDTGNYTVILTNPISKEKQSHVVSLVVYVPPQIGEKS-----------------------------------LISPVD 433 (772)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ChhcCceEEEEEEECCcCeEEEEEEEEEEecCCcccccc-----------------------------------cCCCcc
Confidence 99999999999999988653 45566666555432110 001112
Q ss_pred EEEcCCeEEEEEEEeeecCCc-eEEEECCee--------------------------------cCC-CCceEEEEc--CC
Q psy7039 366 TVLAGEEFTITVPFSGRPKPT-PIWTVNGDE--------------------------------VSP-DGRIKFETS--EN 409 (516)
Q Consensus 366 ~v~~g~~~~l~C~~~g~p~~~-i~W~~~~~~--------------------------------l~~-~~~~~~~~~--~~ 409 (516)
.+..|+.+.|.|.+.|.|.|. +.|++++.. +.. ..++..... ..
T Consensus 434 ~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~ 513 (772)
T 3v2a_R 434 SYQYGTTQTLTCTVYAIPPPHHIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKT 513 (772)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccCCCCcEEEEeEeccCCCCcEEEEEEcCCccccccccccccccCcCccccccccccccCCCcEEEeccceeeccCcceE
Confidence 367899999999999999996 999986321 000 001111111 11
Q ss_pred eEEEEEcCceecCCceEEEEEEEcCCCceeEEEEEEEecCCC
Q psy7039 410 QTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPS 451 (516)
Q Consensus 410 ~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~v~~~p~ 451 (516)
...|.|.++ .|.|.|+|.|.|..|.....+.+.|..+|.
T Consensus 514 ~~~L~i~~~---~d~G~Y~C~a~N~~g~~~~~~~l~V~~~p~ 552 (772)
T 3v2a_R 514 VSTLVIQAA---NVSALYKCEAVNKVGRGERVISFHVTRGPE 552 (772)
T ss_dssp ------------------------------------------
T ss_pred EEEEEEeec---ccCeEEEEEEEccccccceeEEEEEECCce
Confidence 245667665 678999999999999988888888876554
|
| >1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A | Back alignment and structure |
|---|
Probab=99.89 E-value=8.4e-21 Score=194.97 Aligned_cols=304 Identities=10% Similarity=0.056 Sum_probs=185.9
Q ss_pred CCcEEEeCCCcCCCeEEEEEEEecCCCCC----CCCCCCcceEecc-CCCCCccccCcccceEEecCCeEEEEEeeeecc
Q psy7039 68 GETSCTVPGLIEGETYQFQVRAVNAAGPG----EASKPTAPIVAKP-KNLAPRIDRSTLNDVKIKAGQSFSFDVKEFREL 142 (516)
Q Consensus 68 ~~~~~~i~~l~~~~~y~~~~~a~n~~g~~----~~s~~~~~~~~~~-~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~ 142 (516)
...+|.|.++++.|.|.|+|.+.|..|.. ... ....+.+.. ...+|.+...... .+.+|+.+.|.|.+.
T Consensus 78 ~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~-~~~~l~V~~~~~~~P~i~~~~~~--~~~~g~~v~L~C~~~--- 151 (475)
T 1iga_A 78 TTAYMGLSSLRPEDTAVYYCARDPYGGGKSEFDYWG-QGTLVTVSSASPTSPKVFPLSLC--STQPDGNVVIACLVQ--- 151 (475)
T ss_pred CeEEEEECCCChhhCEEEEEEEeccCCCccceeeec-CceEEEeccCCCcCCeEEecCcc--ccCCCCeEEEEEEEe---
Confidence 45689999999999999999999876521 111 112233321 2234555422222 236899999999999
Q ss_pred ccccCccccccccccCccceeecCc-Cc-e-eeEEeeCCeeeccCCceEEe--ecCC---eeEEEeccCCCCCCeeEEEE
Q psy7039 143 SYTKSPLRALGVRANSTKGWVKLSE-PF-L-NHGWSINGQVCQIGGRADVQ--TTKS---ETVLDIPFCSRSDTGHYSLT 214 (516)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~-p~-~-~i~W~~~~~~~~~~~~~~~~--~~~~---~~~l~i~~~~~~d~g~Y~c~ 214 (516)
+. |. + .+.|++++..........+. ..+. .+.|.|..+...|.|.|+|.
T Consensus 152 -----------------------g~~P~~p~~v~W~~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~ 208 (475)
T 1iga_A 152 -----------------------GFFPQEPLSVTWSESGQGVTARNFPPSQDASGDLYTTSSQLTLPATQCLAGKSVTCH 208 (475)
T ss_pred -----------------------eecCCCceEEEEcCCCcccceEeCCceecCCCCcEEEEEEEEechhHcCCCceEEEE
Confidence 65 55 3 99999887432111000011 1111 24688999999999999999
Q ss_pred EEcCCCce-EEEEEee---------------------ceee-e----eccccCCceEEEEEEEEccCCCCC---ceeccc
Q psy7039 215 LENNLGTA-TASAHVT---------------------GTEF-T----DNNVHEGKAYEYRVSAVNAAGTEK---PKISLD 264 (516)
Q Consensus 215 ~~~~~g~~-~~~~~~~---------------------~~~~-~----~~~l~~g~~~~~~~~~~~~~g~p~---p~i~W~ 264 (516)
+.|..+.. ...+.+. .... . ...+..|+.+.+.|.+ .|.++ +.+.|+
T Consensus 209 a~n~~~~~~~~~v~l~V~~~~~~~~~~~~~~~~~~~~~p~v~~~~p~~~~~~~G~~v~L~C~~---~g~~p~~~~~i~W~ 285 (475)
T 1iga_A 209 VKHYTNPSQDVTVPCPVPSTPPTPSPSTPPTPSPSCCHPRLSLHRPALEDLLLGSEANLTCTL---TGLRDASGVTFTWT 285 (475)
T ss_pred EEECCCCceeeeEecccccCcccccccccccCCCCCCCcEEEEcCCChHHhccCCceEEEEEE---EcccCCCceEEEEC
Confidence 99987642 1112100 0111 1 1225789999999998 45533 689993
Q ss_pred ccccceE----EEEE-e---cceeeEEEccCCCCCceEEEEEEEecCCCcceeEEEEEecCCCCCCCCceeeeccCCeeE
Q psy7039 265 ALIGKRI----KEFV-T---STTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVS 336 (516)
Q Consensus 265 ~~~~~~~----~~~~-~---~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~ 336 (516)
+...... .... . .....|.|.++..+|+|.|+|.|.|..|.......+.+.....+|. +.+.
T Consensus 286 ~~~~~~~~~~~~~~~~~g~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~~~~~~~~~v~~~~~~~~P~--v~~~-------- 355 (475)
T 1iga_A 286 PSSGKSAVQGPPERDLCGCYSVSSVLPGCAEPWNHGKTFTCTAAYPESKTPLTATLSKSGNTFRPE--VHLL-------- 355 (475)
T ss_pred CCCcCCccccCceECCCCCEEEEEEEEEchHHhccCCcEEEEEEcCCCCCceEEEeecCCCCCCCe--EEEE--------
Confidence 3111100 0000 0 1345799999999999999999999988765444443311111211 1100
Q ss_pred EEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeeecC--CceEEEECCeecCCCCceEE--EEc---CC
Q psy7039 337 MSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPK--PTPIWTVNGDEVSPDGRIKF--ETS---EN 409 (516)
Q Consensus 337 l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~--~~i~W~~~~~~l~~~~~~~~--~~~---~~ 409 (516)
......+..|+.+.|.|.+.|.++ +.|.|+++|..+........ ... .+
T Consensus 356 ------------------------~~~~~~v~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~ 411 (475)
T 1iga_A 356 ------------------------PPPSEELALNELVTLTCLARGFSPKDVLVRWLQGSQELPREKYLTWASRQEPSQGT 411 (475)
T ss_pred ------------------------CCChHHhccCCceEEEEEEeeeECCCCEEEEEECCEECCCCceeecccccccCCCC
Confidence 011123567899999999998644 48999999988754421110 111 11
Q ss_pred -----eEEEEEcCceecCCceEEEEEEEcCCCce
Q psy7039 410 -----QTIYRNKSAKRATDSGSYTIQLVNTVGSD 438 (516)
Q Consensus 410 -----~~~l~i~~~~~~~~~g~y~c~a~n~~G~~ 438 (516)
.+.|.|..... .+.|.|+|.|.|.....
T Consensus 412 gt~~~~s~L~i~~~~~-~~~g~YtC~a~n~~l~~ 444 (475)
T 1iga_A 412 TTFAVTSILRVAAEDW-KKGDTFSCMVGHEALPL 444 (475)
T ss_pred CcEEEEEEEEEChHHh-cCCCEEEEEEEcCCCCC
Confidence 14577877777 88999999999987653
|
| >2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A | Back alignment and structure |
|---|
Probab=99.89 E-value=3.3e-21 Score=183.76 Aligned_cols=213 Identities=21% Similarity=0.230 Sum_probs=168.7
Q ss_pred CCcEEEeCCCcCCCeEEEEEEEecCCCCCCCCCCCcceEeccCCCCCccccCcccceEEecCCeEEEEEeeeeccccccC
Q psy7039 68 GETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKS 147 (516)
Q Consensus 68 ~~~~~~i~~l~~~~~y~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~ 147 (516)
....|.|.+++..|.|.|+|.|.|..|... ....+.+. .+|.+.........+.+|+.+.|.|.+.
T Consensus 59 ~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~~---~~~~l~V~---~~p~~~~~~~~~~~v~~g~~~~l~C~~~-------- 124 (284)
T 2rik_A 59 NTATLTVLKVTKGDAGQYTCYASNVAGKDS---CSAQLGVQ---EPPRFIKKLEPSRIVKQDEHTRYECKIG-------- 124 (284)
T ss_dssp TEEEEEESSCCGGGCEEEEEEEEETTEEEE---EEEEEEEE---CCCEEEECCCSEEEEETTCCEEEEEEEE--------
T ss_pred CEEEEEEecCCcccCEEEEEEEEECCceEE---EEEEEEcc---CCCcccccCCCceEecCCceEEEEEEEe--------
Confidence 467899999999999999999999776532 12222222 3565543444556789999999999999
Q ss_pred ccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEE
Q psy7039 148 PLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAH 227 (516)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~ 227 (516)
+.|.+.+.|++++..+....++.+........|.|.+++.+|+|.|+|.+.|..|.......
T Consensus 125 ------------------g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~ 186 (284)
T 2rik_A 125 ------------------GSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTS 186 (284)
T ss_dssp ------------------SSSCCEEEEEETTEECCCSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEE
T ss_pred ------------------eeCCCEEEEEECCEECcCCCcEEEEEcCCEEEEEECCCCcccCEEEEEEEEcCCCceeEEEE
Confidence 89999999999999998887777776777889999999999999999999999888766655
Q ss_pred eeceee-------eeccccCCceEEEEEEEEccCCCCCceeccccc-----ccceEEEEEecceeeEEEccCCCCCceEE
Q psy7039 228 VTGTEF-------TDNNVHEGKAYEYRVSAVNAAGTEKPKISLDAL-----IGKRIKEFVTSTTASLNIKNSVRKDSGIY 295 (516)
Q Consensus 228 ~~~~~~-------~~~~l~~g~~~~~~~~~~~~~g~p~p~i~W~~~-----~~~~~~~~~~~~~~~l~i~~l~~~d~g~y 295 (516)
+.+... ....+..|..+.|.|.+ .|.|.|.+.|.+. .+....+........|.|.++..+|.|.|
T Consensus 187 l~V~~~p~~~~~~~~~~~~~g~~v~l~C~~---~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y 263 (284)
T 2rik_A 187 LKVKEPPVFRKKPHPVETLKGADVHLECEL---QGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEY 263 (284)
T ss_dssp EEEECCCBCCSCCCCEEECTTCCEEEEEEC---BSSSCCEEEEEETTEEECBTTTEEEEEETTEEEEEECSCCGGGCEEE
T ss_pred EEEecCCcceeCCCcceecCCCeEEEEEEE---EecCCCEEEEEECCEECcCCCCEEEEEcCCEEEEEEcCCCcccCEEE
Confidence 443221 12346789999999998 7889999999652 23344454555667999999999999999
Q ss_pred EEEEEecCCCcceeEEEEEe
Q psy7039 296 KIEAKNDYGIDMADIEVVVV 315 (516)
Q Consensus 296 ~c~a~n~~g~~~~~~~l~v~ 315 (516)
+|.|.|..|.....+.|.|.
T Consensus 264 ~C~a~N~~G~~~~~~~l~V~ 283 (284)
T 2rik_A 264 QCKASNDVGSYTCVGSITLK 283 (284)
T ss_dssp EEEEEETTEEEEEEEEEEEC
T ss_pred EEEEEeCCCceeEEEEEEEc
Confidence 99999999998888888774
|
| >2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=5.7e-21 Score=206.77 Aligned_cols=357 Identities=13% Similarity=0.154 Sum_probs=216.7
Q ss_pred EEEeCCCcC-CCeEEEEEEEecCCCCCCCCCCCcceEeccCCCCCccccCcccceEEecCCeEEEEEeeeeccccccCcc
Q psy7039 71 SCTVPGLIE-GETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPL 149 (516)
Q Consensus 71 ~~~i~~l~~-~~~y~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~ 149 (516)
.+.|..+.. ...+.|+|.+.+..|.... ....+.......+|.+. .+..+.+.+|+.+.|.|.+.
T Consensus 124 ~~~i~~~~~~~~~l~~~~va~~~~G~~~~--~~v~~~~~~~~~~p~~~--~~~~~~v~~G~~v~l~C~~~---------- 189 (731)
T 2v5y_A 124 ELAISTFWPNFYQVIFEVITSGHQGYLAI--DEVKVLGHPCTRTPHFL--RIQNVEVNAGQFATFQCSAI---------- 189 (731)
T ss_dssp EEEECCCTTSCEEEEEEEEECSSCCEEEE--CCBEEESSCCSSSCEEC--CCCCEEEETTSCEEEEEEEE----------
T ss_pred EEEEeecCCCceEEEEEEEecCCceEEEE--eeEEeeecccccccccc--cccceEEeCCCcEEEEEEeC----------
Confidence 456666533 3358999988777775332 12223333344567765 45578999999999999999
Q ss_pred ccccccccCccceeecCcCceeeE-Ee--eCCeeeccCCceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCc-eEEE
Q psy7039 150 RALGVRANSTKGWVKLSEPFLNHG-WS--INGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGT-ATAS 225 (516)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~p~~~i~-W~--~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~-~~~~ 225 (516)
|.|.+.+. |+ +++..+.......+......++|.|.++...|.|.|+|.+.|..|. ....
T Consensus 190 ----------------g~P~p~i~~W~~~~~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~g~Y~c~A~n~~G~~~s~~ 253 (731)
T 2v5y_A 190 ----------------GRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGISNY 253 (731)
T ss_dssp ----------------SCCCTTCEEEEEESSSCCEEEEEEEECCSSEEEEEEEECSCCTTTCEEEEEEEEETTEEEECCC
T ss_pred ----------------CCCCCceeEEEecCCCccccccceEEeccccceEEEEEcccccccCeEEEEEEECCCCCcceee
Confidence 99999998 87 6777665332222222233579999999999999999999999887 3332
Q ss_pred EEeeceee-------eeccccCCceEEEEEEEEccCCCCCc---eecccccccceEEEEEecceeeEEEccCCCCCceEE
Q psy7039 226 AHVTGTEF-------TDNNVHEGKAYEYRVSAVNAAGTEKP---KISLDALIGKRIKEFVTSTTASLNIKNSVRKDSGIY 295 (516)
Q Consensus 226 ~~~~~~~~-------~~~~l~~g~~~~~~~~~~~~~g~p~p---~i~W~~~~~~~~~~~~~~~~~~l~i~~l~~~d~g~y 295 (516)
..+.+... ....+ ....+.+.+......|..+. .+.|....+....+ .......+.|.+|.+.+.|.|
T Consensus 254 ~~l~V~~~P~~~~~p~~~~~-~~~~v~l~w~~~~~~g~~~i~~Y~v~~~~~~~~~~~~-~~~~~~~~~i~~L~p~t~Y~~ 331 (731)
T 2v5y_A 254 AELVVKEPPVPIAPPQLASV-GATYLWIQLNANSINGDGPIVAREVEYCTASGSWNDR-QPVDSTSYKIGHLDPDTEYEI 331 (731)
T ss_dssp EEEEEECCCCBSSCCEEEEE-CSSCEEEECCCSSBSSCSCCCEEEEEEEESSSSCEEE-EECCSSEEEECSCCTTCEEEE
T ss_pred EEEEEecCCCCCCCcceecc-CCceEEEEeCCcccCCCCccEEEEEEEEECCCCceEE-eccCcceEEEeCCCCCCEEEE
Confidence 22221111 11111 12334444433111121111 23333221211111 234457899999999999999
Q ss_pred EEEEE--ecCCCcceeEEEEEecCCCCC-CCC--ceeeeccCCeeEEEecCCCCCCC-CceeeccccccccccccEEEEc
Q psy7039 296 KIEAK--NDYGIDMADIEVVVVSKPGPP-TGP--IDYTTVTPESVSMSWKPPVDDGG-TPITGAPKITSDLSIRDMTVLA 369 (516)
Q Consensus 296 ~c~a~--n~~g~~~~~~~l~v~~~p~~p-~~p--~~~~~~~~~~~~l~W~~p~~~~~-~~i~~y~~~~~~~~~~~~~v~~ 369 (516)
+|.|. |..|....+..+.+...+..| ..| +.+..++.+++.|+|++|..+.+ ..+.+|.
T Consensus 332 ~V~A~~~N~~G~s~~S~~~~~~t~~~~p~~~P~~~~~~~~~~~sv~l~W~~p~~~~~~~~~~~y~--------------- 396 (731)
T 2v5y_A 332 SVLLTRPGEGGTGSPGPALRTRTKCADPMRGPRKLEVVEVKSRQITIRWEPFGYNVTRCHSYNLT--------------- 396 (731)
T ss_dssp EEEEECSSTTCSCCBCCCEEEECCCCCCSCCCEEEEEEEECSSCEEEEEECCCHHHHCSSSCEEE---------------
T ss_pred EEEEEecCCCccccCCCcEEeeecCCCCCCCCceeEEEeccCCeEEEEEECCCcccccceeeeEE---------------
Confidence 99999 999887655445555443322 333 66778899999999998854321 2233331
Q ss_pred CCeEEEEEEEeeecCCceEEEECCeecCCC-CceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEEEEec
Q psy7039 370 GEEFTITVPFSGRPKPTPIWTVNGDEVSPD-GRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVD 448 (516)
Q Consensus 370 g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~-~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~v~~ 448 (516)
|.|...+...... ....+........+.|.+|.+ ...|.|++.|.|..|.+. +..+.+.+
T Consensus 397 -----------------v~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p-~t~Y~~~V~A~n~~G~s~-S~~~~~~T 457 (731)
T 2v5y_A 397 -----------------VHYCYQVGGQEQVREEVSWDTENSHPQHTITNLSP-YTNVSVKLILMNPEGRKE-SQELIVQT 457 (731)
T ss_dssp -----------------EEEEEESSSSEEEEEEEECCSSCSSCEEEECSCCS-SCEEEEEEEEECSSCEEE-CCCEEEEC
T ss_pred -----------------EEEEEccCCCCccceeEEEEecCCcceEEECCCCC-CCEEEEEEEEEcCCCCCC-CceEEEEc
Confidence 1111111000000 000001112335688999999 999999999999999863 66666765
Q ss_pred CCCCCC--CCcccccc-cCCeEEEEeeCCCCCCCCCcceEEEEEEecCC
Q psy7039 449 KPSPPQ--GPLDVSDI-TPESCSLSWKPPLDDGGSPITNYVVEKYESAT 494 (516)
Q Consensus 449 ~p~~P~--~~l~~~~~-~~~~~~l~W~~p~~~~~~~i~~Y~v~~~~~~~ 494 (516)
...+|. ..+.+... ..+++.|+|++|.. .++.|.+|.|+|+..+.
T Consensus 458 ~~~~P~~p~~~~~~~~~~~~si~l~W~~P~~-~~g~i~~Y~V~~~~~~~ 505 (731)
T 2v5y_A 458 DEDLPGAVPTESIQGSTFEEKIFLQWREPTQ-TYGVITLYEITYKAVSS 505 (731)
T ss_dssp CCCCCCCCCTTTCEEEEETTEEEEECCCCSC-CSSCCCEEEEEEEEEEE
T ss_pred cCCCCCCCCcceEEeeecCCeEEEEEcCCCC-CCCCccceEEEEEECcC
Confidence 444331 12233322 46899999999864 45689999999988754
|
| >1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H* | Back alignment and structure |
|---|
Probab=99.88 E-value=3.6e-21 Score=196.77 Aligned_cols=303 Identities=9% Similarity=0.085 Sum_probs=177.4
Q ss_pred CCcEEEeCCCcCCCeEEEEEEEecCCCC--------C--CCCCCCcceEecc-CCCCCccccCcccceEEecCCeEEEEE
Q psy7039 68 GETSCTVPGLIEGETYQFQVRAVNAAGP--------G--EASKPTAPIVAKP-KNLAPRIDRSTLNDVKIKAGQSFSFDV 136 (516)
Q Consensus 68 ~~~~~~i~~l~~~~~y~~~~~a~n~~g~--------~--~~s~~~~~~~~~~-~~~~p~~~~~~~~~~~v~~g~~~~l~C 136 (516)
...+|.|.+++..|.|.|+|.|.|..|. . ... ....+.+.. ...+|.+. .......+.+|+.+.|.|
T Consensus 77 ~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~-~~~~l~V~~~~~~~P~i~-~~~~~~~~~~g~~v~L~C 154 (457)
T 1hzh_H 77 NTAYMELRSLRSADTAVYYCARVGPYSWDDSPQDNYYMDVWG-KGTTVIVSSASTKGPSVF-PLAPSSKSTSGGTAALGC 154 (457)
T ss_dssp TEEEEEECSCCGGGCEEEEEEECCCCCSSCCTTTTCSCCBCC-CCEEEEECSCCCBCCEEE-EECCCSCCCTTCCEEEEE
T ss_pred CEEEEEECCCCcccCEEEEEEEecCCccccccccccccceEC-CcEEEEecCCCCCCCeEE-ecCccccccCCCcEEEEE
Confidence 4568999999999999999999987651 0 111 112233222 22345544 222223467899999999
Q ss_pred eeeeccccccCccccccccccCccceeecCc-Cc-eeeEEeeCCeeeccCCceEEeecCC----eeEEEeccCCCCCCee
Q psy7039 137 KEFRELSYTKSPLRALGVRANSTKGWVKLSE-PF-LNHGWSINGQVCQIGGRADVQTTKS----ETVLDIPFCSRSDTGH 210 (516)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~-~~i~W~~~~~~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~g~ 210 (516)
.+. +. |. +.+.|++++..+...........++ ...|.|.++..+| |.
T Consensus 155 ~~~--------------------------g~~P~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-G~ 207 (457)
T 1hzh_H 155 LVK--------------------------DYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QT 207 (457)
T ss_dssp EEE--------------------------SBBSCCCEEEETTTTBCTTEEEEEEEECTTSCEEEEEEEEECSGGGGT-SC
T ss_pred EEe--------------------------EEeCCCeEEEEEeCCEeccceEcCceECCCCCEEEEEEEEecccccCC-ce
Confidence 999 65 64 7999999886542111111111111 2479999999999 99
Q ss_pred EEEEEEcCCCceEEEEEeec--------------------eee-ee----c-cccCCceEEEEEEEEccCCCCCc----e
Q psy7039 211 YSLTLENNLGTATASAHVTG--------------------TEF-TD----N-NVHEGKAYEYRVSAVNAAGTEKP----K 260 (516)
Q Consensus 211 Y~c~~~~~~g~~~~~~~~~~--------------------~~~-~~----~-~l~~g~~~~~~~~~~~~~g~p~p----~ 260 (516)
|+|.+.|..+.......+.. ..+ .. . .+..|+.+.|.|.+ .|.+++ .
T Consensus 208 Y~C~a~n~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~p~v~~~~p~~~~~~~~G~~v~L~C~~---~g~~p~p~~~~ 284 (457)
T 1hzh_H 208 YICNVNHKPSNTKVDKKAEPKSCDKTHTCPPCPAPELLGGPSVFLFPPKPKDTLMISRTPEVTCVV---VDVSHEDPEVK 284 (457)
T ss_dssp CEEEEEEGGGTEEEEEECCCCCSCSSCSCCSCCCCCCSSSCEEEEECCCHHHHHCTTSCCCEEEEE---ECCCTTCCCCE
T ss_pred EEEEEEeCCCCcceeEEecccCCCcccccCCCCCccccCCceEEeECcCchhhcccCCceEEEEEE---EcccCCCCceE
Confidence 99999998776544433221 111 11 1 15679999999998 566443 8
Q ss_pred eccccccc----ceEEEEEecceeeEEEcc---CCCCC---ceEEEEEEEecCCCcceeEEEEEe-cCCCCCCCCceeee
Q psy7039 261 ISLDALIG----KRIKEFVTSTTASLNIKN---SVRKD---SGIYKIEAKNDYGIDMADIEVVVV-SKPGPPTGPIDYTT 329 (516)
Q Consensus 261 i~W~~~~~----~~~~~~~~~~~~~l~i~~---l~~~d---~g~y~c~a~n~~g~~~~~~~l~v~-~~p~~p~~p~~~~~ 329 (516)
+.|.+... ...........+.+.+.. +...| +|.|+|.|.|..+.......+.+. ....+|. +.+.
T Consensus 285 i~W~k~~~~~~~~~~~~~~~~~~g~~~~~~~l~i~~~d~~d~G~Y~C~a~n~~~~~~~~~~v~~~~~~~~~P~--v~~~- 361 (457)
T 1hzh_H 285 FNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQ--VYTL- 361 (457)
T ss_dssp EEEEETTEEECCCEEEEEEECTTSCEEEEEEECCCHHHHHHTCCEEEEEECTTSSSCEEEEECCCCCCCBCCE--EEEE-
T ss_pred EEEEeCCccccccccccceecCCCcEEEEEEEEECHHHccCCCcEEEEEeCCCCCCcceEEEEcccCCCCCCe--EEEE-
Confidence 99965321 111111222333444332 34555 999999999876554333333221 1111110 1000
Q ss_pred ccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeeecCC--ceEEEECCeecCCCCceEEEEc
Q psy7039 330 VTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKP--TPIWTVNGDEVSPDGRIKFETS 407 (516)
Q Consensus 330 ~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~--~i~W~~~~~~l~~~~~~~~~~~ 407 (516)
+ .....+..|+ +.|.|.+.|.+++ .|.|+++|..+...........
T Consensus 362 -----------~--------------------~~~~~~~~~~-~~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~ 409 (457)
T 1hzh_H 362 -----------P--------------------PSRDELTKNQ-VSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLD 409 (457)
T ss_dssp -----------C--------------------CCGGGGGSSE-EEEEEEEEEEBSSCCEEEEEETTEECCCEEECCCEEC
T ss_pred -----------C--------------------CCccccCCCc-EEEEEEEEeEECCCCEEEEEECCEECcceeecCceeC
Confidence 0 0001123445 9999999997654 8999999988753221111111
Q ss_pred CC-----eEEEEEcCceecCCceEEEEEEEcCCCce
Q psy7039 408 EN-----QTIYRNKSAKRATDSGSYTIQLVNTVGSD 438 (516)
Q Consensus 408 ~~-----~~~l~i~~~~~~~~~g~y~c~a~n~~G~~ 438 (516)
.+ ...|.|..... .|.|.|+|.|.|.....
T Consensus 410 ~~g~~~~~s~l~i~~~~~-~~~g~YtC~a~n~~l~~ 444 (457)
T 1hzh_H 410 SDGSFFLYSKLTVDKSRW-QQGNVFSCSVMHEALHN 444 (457)
T ss_dssp TTSCEEEEEEEEEEHHHH-HTTCCEEEEEECTTSGG
T ss_pred CCCCEEEEEEEEEChHHc-cCCCeEEEEEEECCCCC
Confidence 11 13466666666 68999999999987554
|
| >1fnf_A Fibronectin; RGD, extracellular matrix, cell adhesion protein; 2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1mfn_A 2mfn_A 2ck2_A | Back alignment and structure |
|---|
Probab=99.88 E-value=1.8e-19 Score=178.63 Aligned_cols=310 Identities=17% Similarity=0.202 Sum_probs=190.1
Q ss_pred CCCCCcceEEEeeeCC-eeEEEecCCCCCCCCceeceEEEEEeCCC-CeE-EeEEeecCCcEEEeCCCcCCCeEEEEEEE
Q psy7039 13 EPGKPTDLEATDWDKD-HVDLQWTPPISDGGSPITGYVVEMKDKTG-NWE-KAVVVPAGETSCTVPGLIEGETYQFQVRA 89 (516)
Q Consensus 13 ~p~~p~~l~~~~~~~~-~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~-~~~-~~~~~~~~~~~~~i~~l~~~~~y~~~~~a 89 (516)
+|++|.+|++..+.++ +|.|+|.+|. ++.+.+|.|+++..++ .|. .........+++.|.+|.+++.|.|+|+|
T Consensus 1 Pp~~P~~l~~~~~~~~~sv~l~W~~~~---~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a 77 (368)
T 1fnf_A 1 PLSPPTNLHLEANPDTGVLTVSWERST---TPDITGYRITTTPTNGQQGNSLEEVVHADQSSCTFDNLSPGLEYNVSVYT 77 (368)
T ss_dssp CCCCCEEEEEEECSSSSCEEEEEECCS---CSSCCEEEEEEEETTTCSSCCEEEEECTTCCEEECCCCCTTSCEEEEEEE
T ss_pred CCCCCcceEEEecCCCcEEEEEEeCCC---CCCceEEEEEEEECCCCCCceeEEEecCCcCEEEECCCCCCCEEEEEEEE
Confidence 6899999999988776 5999999974 2469999999998655 221 12234567899999999999999999999
Q ss_pred ecCCCCCCCCCCCcceEeccCCCCCccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCc
Q psy7039 90 VNAAGPGEASKPTAPIVAKPKNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPF 169 (516)
Q Consensus 90 ~n~~g~~~~s~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 169 (516)
.|..|.+.+.. ....+...+| . .|.+... +...
T Consensus 78 ~~~~g~s~~~~----~~~~~~~~~p-------~----------~l~~~~~--------------------------~~~s 110 (368)
T 1fnf_A 78 VKDDKESVPIS----DTIIPAVPPP-------T----------DLRFTNI--------------------------GPDT 110 (368)
T ss_dssp EETTEECCCEE----EEECCCCCCC-------E----------EEEEESC--------------------------CSSC
T ss_pred EcCCCccCcee----eeecCCCcCC-------c----------eeEEEEc--------------------------CCCe
Confidence 99888665421 1221111111 1 2222222 4456
Q ss_pred eeeEEeeCCe-eeccCCceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCc-eEEEE--EeeceeeeeccccCCceEE
Q psy7039 170 LNHGWSINGQ-VCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGT-ATASA--HVTGTEFTDNNVHEGKAYE 245 (516)
Q Consensus 170 ~~i~W~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~-~~~~~--~~~~~~~~~~~l~~g~~~~ 245 (516)
..+.|..... .+. .|........+. ..... ......+.+.+|.++..|.
T Consensus 111 i~l~W~~p~~~~~~---------------------------~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~ 163 (368)
T 1fnf_A 111 MRVTWAPPPSIDLT---------------------------NFLVRYSPVKNEEDVAELSISPSDNAVVLTNLLPGTEYV 163 (368)
T ss_dssp EEEEEECCTTCCCS---------------------------EEEEEEEETTCTTCCEEEEECTTCCEEEECSCCTTCEEE
T ss_pred EEEEeeCCCCCCCc---------------------------EEEEEEEECCCCCccEEEEcCCCcceEEecCCCCCCEEE
Confidence 6788876421 111 344433321111 00000 0111233444455555555
Q ss_pred EEEEEEccCCCCCceecccccccceEEEEEecceeeEEEccCCCCCceEEEEEEEecCCCcceeEEEEEecCCCCCCCCc
Q psy7039 246 YRVSAVNAAGTEKPKISLDALIGKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPI 325 (516)
Q Consensus 246 ~~~~~~~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~p~~p~ 325 (516)
+++.+ .|..|.... ........+.+|. .+
T Consensus 164 ~~V~a-------------------------------------------------~~~~g~s~~-~~~~~~~~~~~P~-~l 192 (368)
T 1fnf_A 164 VSVSS-------------------------------------------------VYEQHESTP-LRGRQKTGLDSPT-GI 192 (368)
T ss_dssp EEEEE-------------------------------------------------EETTEECCC-EEEEEECCCCCCE-EE
T ss_pred EEEEE-------------------------------------------------EeCCCCCCC-eEeeecCCCCCCC-cc
Confidence 55554 444333221 1222223333332 27
Q ss_pred eeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEEE
Q psy7039 326 DYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFE 405 (516)
Q Consensus 326 ~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~ 405 (516)
.+...+.+++.|+|.+|.. .+.+|. |.|...+.. .......
T Consensus 193 ~~~~~~~~sv~l~W~~p~~----~i~~Y~--------------------------------v~~~~~~~~---~~~~~~~ 233 (368)
T 1fnf_A 193 DFSDITANSFTVHWIAPRA----TITGYR--------------------------------IRHHPEHFS---GRPREDR 233 (368)
T ss_dssp EEESCCSSEEEEEEECCSS----CCSEEE--------------------------------EEEECSCCS---SCCEEEE
T ss_pred EEEEccCCEEEEEEeCCCC----CcCEEE--------------------------------EEEecCCCC---CCccEEE
Confidence 7777889999999998752 355551 222221110 1111222
Q ss_pred EcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEEEEecCCCCCCCCcccccccCCeEEEEeeCCCCCCCCCcceE
Q psy7039 406 TSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNY 485 (516)
Q Consensus 406 ~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~v~~~p~~P~~~l~~~~~~~~~~~l~W~~p~~~~~~~i~~Y 485 (516)
.......+.|.+|.+ ...|.|++.|.|..|.+..+. ......|.+| ..+.+..++.+++.|+|++|. ..+.+|
T Consensus 234 ~~~~~~~~~i~~L~p-~t~Y~~~V~A~n~~g~~~~~~-~~~~t~p~~P-~~l~~~~~~~~sv~l~W~~p~----~~i~~Y 306 (368)
T 1fnf_A 234 VPHSRNSITLTNLTP-GTEYVVSIVALNGREESPLLI-GQQSTVSDVP-RDLEVVAATPTSLLISWDAPA----VTVRYY 306 (368)
T ss_dssp EETTCCEEEEESCCT-TCEEEEEEEEEETTEECCCEE-EEEECCCCSC-EEEEEEEEETTEEEEEEECCS----SCCSEE
T ss_pred eCCCcCEEEECCCCC-CCEEEEEEEEEeCCccCCccc-ccccCCCCCC-CeeEEEecCCCEEEEEeeCCC----CccceE
Confidence 334445789999999 999999999999998755443 3456677877 788888889999999999875 248999
Q ss_pred EEEEEecCCCc
Q psy7039 486 VVEKYESATGV 496 (516)
Q Consensus 486 ~v~~~~~~~~~ 496 (516)
.|+|+..+...
T Consensus 307 ~v~~~~~~~~~ 317 (368)
T 1fnf_A 307 RITYGETGGNS 317 (368)
T ss_dssp EEEEEETTCCS
T ss_pred EEEEEECCCCC
Confidence 99999876543
|
| >2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=3.7e-21 Score=187.52 Aligned_cols=253 Identities=11% Similarity=0.047 Sum_probs=156.0
Q ss_pred CcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCc-CceeeEEeeCCeeec---------cCCceE
Q psy7039 119 STLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSE-PFLNHGWSINGQVCQ---------IGGRAD 188 (516)
Q Consensus 119 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~i~W~~~~~~~~---------~~~~~~ 188 (516)
..+..+.+.+|+.+.|.|.+. +. |.+.+.|++++.... ...|+.
T Consensus 8 ~~p~~~~v~~G~~v~L~C~~~--------------------------~~~p~~~v~W~k~~~~~~~~i~~~~~~~~~r~~ 61 (327)
T 2wng_A 8 QPDKSVSVAAGESAILHCTVT--------------------------SLIPVGPIQWFRGAGPARELIYNQKEGHFPRVT 61 (327)
T ss_dssp CCCSEEEEETTSCEEECCEES--------------------------CCCSCCCEEEEESCSTTCEEEEETTSSCCTTEE
T ss_pred cCCCceEEecCCcEEEEEEcc--------------------------CcCCCceEEEEECCCCCceEEEEcCCCCcceee
Confidence 556778999999999999999 76 888999999865321 012333
Q ss_pred Eeec-----CCeeEEEeccCCCCCCeeEEEEEEcCCCceE-------EEEEeece----ee--eeccccCCceEEEEEEE
Q psy7039 189 VQTT-----KSETVLDIPFCSRSDTGHYSLTLENNLGTAT-------ASAHVTGT----EF--TDNNVHEGKAYEYRVSA 250 (516)
Q Consensus 189 ~~~~-----~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~-------~~~~~~~~----~~--~~~~l~~g~~~~~~~~~ 250 (516)
.... ....+|.|.+++.+|+|.|+|.+.|..+... ..+.+... .+ ....+.+|+.+.+.|.+
T Consensus 62 ~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~~~~~l~V~~~p~~p~i~~~~~~~~~g~~~~l~C~~ 141 (327)
T 2wng_A 62 TVSESTKRENMDFSISISNITPADAGTYYCVKFRKGSPDTEFKSGAGTELSVRAKPSAPVVSGPAARATPQHTVSFTCES 141 (327)
T ss_dssp ECC---CTTCCBCCEEECSCCGGGCEEEEEEEEESSTTCEEEEECCCEEEEEEBCCCCCEEECCSSCBCTTCEEEEEEEE
T ss_pred eecccccccCceeEEEEccCccccCeEEEEEeecCCCcceeEeecCcEEEEEEecCCCceeeccccccCCCCEEEEEEEE
Confidence 3221 4456899999999999999999999765421 12222111 11 12456789999999998
Q ss_pred EccCCCCCc--eecccccc----cceEEEEEec------ceeeEEEccCCCCCceEEEEEEEecCCCc-ceeEEEEEec-
Q psy7039 251 VNAAGTEKP--KISLDALI----GKRIKEFVTS------TTASLNIKNSVRKDSGIYKIEAKNDYGID-MADIEVVVVS- 316 (516)
Q Consensus 251 ~~~~g~p~p--~i~W~~~~----~~~~~~~~~~------~~~~l~i~~l~~~d~g~y~c~a~n~~g~~-~~~~~l~v~~- 316 (516)
.|.+++ .+.|.+.. .......... ....|.|.....++.|.|+|.|.|..+.. .......+..
T Consensus 142 ---~g~p~~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~d~~g~Y~C~a~n~~~~~~~~~~~~~~~~~ 218 (327)
T 2wng_A 142 ---HGFSPRDITLKWFKNGNELSDFQTNVDPVGESVSYSIHSTAKVVLTREDVHSQVICEVAHVTLQGDPLRGTANLSET 218 (327)
T ss_dssp ---EEEBSSCCEEEEEETTEECCCEEEEEECSSCCSCEEEEEEEEEECCTTGGGCEEEEEEECTTSCSCCEEEEEEGGGT
T ss_pred ---eCccCCCcEEEEEECCEEccccccccccccCCCceEEEEEEEEechhcCcCceEEEEEeccccCCCcccceEEeccc
Confidence 566655 89996521 1111111111 12356677777777899999999987763 2222222211
Q ss_pred CCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeeecCC--ceEEEECCe
Q psy7039 317 KPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKP--TPIWTVNGD 394 (516)
Q Consensus 317 ~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~--~i~W~~~~~ 394 (516)
...+|. +. + ... .+.+|+.+.|.|.+.|.+++ .+.|+++|.
T Consensus 219 v~~~P~--i~----------~-----------------------~~~--~~~~G~~v~l~C~~~g~~p~~~~v~W~k~g~ 261 (327)
T 2wng_A 219 IRVPPT--LE----------V-----------------------TQQ--PVRAENQVNVTCQVRKFYPQRLQLTWLENGN 261 (327)
T ss_dssp BCBCCE--EE----------E-----------------------EEE--CCSSTTCCEEEEEEEEEBSSCEEEEEEETTE
T ss_pred cCCCCE--EE----------E-----------------------ecC--CcCCCCcEEEEEEEccccCCCcEEEEEECCe
Confidence 111110 10 0 001 15689999999999996554 799999998
Q ss_pred ecCCCCceEEEEcCCe-----EEEEEcCceecCCceEEEEEEEcCCCce
Q psy7039 395 EVSPDGRIKFETSENQ-----TIYRNKSAKRATDSGSYTIQLVNTVGSD 438 (516)
Q Consensus 395 ~l~~~~~~~~~~~~~~-----~~l~i~~~~~~~~~g~y~c~a~n~~G~~ 438 (516)
.+............+. ..|.|..+.. .|.|.|+|.|.|..|..
T Consensus 262 ~l~~~~~~~~~~~~~g~~~~~~~L~i~~~~~-~d~G~Y~C~a~N~~~~~ 309 (327)
T 2wng_A 262 VSRTETASTVTENKDGTYNWMSWLLVNVSAH-RDDVKLTCQVEHDGQPA 309 (327)
T ss_dssp EEEEEECCSCEECTTSCEEEEEEEEC--------CCEEEEEEEETTCCC
T ss_pred EccCcccCceEECCCCcEEEEEEEEEccccc-cCCCEEEEEEEeCCCCC
Confidence 7643211111111111 4688999999 99999999999999874
|
| >3t1w_A Four-domain fibronectin fragment; human fibronectin, FN type-III domain, oncofetal splice VARI extra-domain B, EIIIB, ED-B, angiogenesis, integrin; 2.40A {Homo sapiens} PDB: 4gh7_B | Back alignment and structure |
|---|
Probab=99.87 E-value=2.4e-19 Score=178.23 Aligned_cols=313 Identities=17% Similarity=0.243 Sum_probs=192.3
Q ss_pred CCCCCcceEEEeeeCC-eeEEEecCCCCCCCCceeceEEEEEeCCC--CeEEeEEeecCCcEEEeCCCcCCCeEEEEEEE
Q psy7039 13 EPGKPTDLEATDWDKD-HVDLQWTPPISDGGSPITGYVVEMKDKTG--NWEKAVVVPAGETSCTVPGLIEGETYQFQVRA 89 (516)
Q Consensus 13 ~p~~p~~l~~~~~~~~-~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~--~~~~~~~~~~~~~~~~i~~l~~~~~y~~~~~a 89 (516)
++++|.+|++..++++ ++.|+|++|. . +.+.+|+|+|+..++ ............+++.|.+|.+++.|.|+|+|
T Consensus 2 P~~~P~~l~~~~~~~~~sv~l~W~~~~-~--~~~~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a 78 (375)
T 3t1w_A 2 PLSPPTNLHLEANPDTGVLTVSWERST-T--PDITGYRITTTPTNGQQGNSLEEVVHADQSSCTFDNLSPGLEYNVSVYT 78 (375)
T ss_dssp CCCCCEEEEEEEETTTTEEEEEEECCS-C--SSCCEEEEEEEETTCTTSCCEEEEEETTCCEEEECCCCTTCCEEEEEEE
T ss_pred CCCCCCccEEEecCCCeEEEEEEeCCC-C--CCeeeEEEEEEECCCCCCcceeEEcCCCccEEEEcCCcCCCEEEEEEEE
Confidence 5789999999999999 9999999973 2 358999999998554 11222344567899999999999999999999
Q ss_pred ecCCCCCCCCCCCcceEeccCCCCCccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCc
Q psy7039 90 VNAAGPGEASKPTAPIVAKPKNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPF 169 (516)
Q Consensus 90 ~n~~g~~~~s~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 169 (516)
.|..|.+.+. ...... ..|. +..+.+. .. +...
T Consensus 79 ~~~~g~s~~~---~~~~~~---~~p~-----p~~l~~~----------~~--------------------------~~~s 111 (375)
T 3t1w_A 79 VKDDKESVPI---SDTIIP---EVPQ-----LTDLSFV----------DI--------------------------TDSS 111 (375)
T ss_dssp EETTEECCCE---EEEECC---CCCC-----CSCCEEE----------CC--------------------------CSSE
T ss_pred EcCCCCCCcE---EeeEcC---CCCC-----CceEEEE----------ec--------------------------CCCe
Confidence 9987765432 111111 1121 1112221 11 3344
Q ss_pred eeeEEeeCCeeeccCCceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEEeeceeeeeccccCCceEEEEEE
Q psy7039 170 LNHGWSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVTGTEFTDNNVHEGKAYEYRVS 249 (516)
Q Consensus 170 ~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~~~~~~~~~~l~~g~~~~~~~~ 249 (516)
..+.|..... . +.-.|...+......... ....
T Consensus 112 i~l~W~~~~~-----~---------------------~i~~Y~v~~~~~~~~~~~-------------------~~~~-- 144 (375)
T 3t1w_A 112 IGLRWTPLNS-----S---------------------TIIGYRITVVAAGEGIPI-------------------FEDF-- 144 (375)
T ss_dssp EEEECCCCCC-----T---------------------TEEEEEEEEEESSSCCSC-------------------EEEE--
T ss_pred EEEEEECCCC-----C---------------------CceEEEEEEEECCCCCce-------------------eEEE--
Confidence 5666754310 0 001344443321111000 0000
Q ss_pred EEccCCCCCceecccccccceEEEEEecceeeEEEccCCCCCceEEEEEEEecCCCcceeEEEEEecCCCCCCCCceeee
Q psy7039 250 AVNAAGTEKPKISLDALIGKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTT 329 (516)
Q Consensus 250 ~~~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~p~~p~~~~~ 329 (516)
.......+.|.+|.+...|.|++.|.|..|...... +.....+.+| ..+.+..
T Consensus 145 -------------------------~~~~~~~~~i~~L~p~t~Y~~~V~a~~~~g~s~~s~-~~~~t~~~~p-~~l~~~~ 197 (375)
T 3t1w_A 145 -------------------------VDSSVGYYTVTGLEPGIDYDISVITLINGGESAPTT-LTQQTAVPPP-TDLRFTN 197 (375)
T ss_dssp -------------------------ECTTCCEEEEECCCTTCEEEEEEEEEETTEECCCEE-EEEECCCCCC-EEEEEES
T ss_pred -------------------------cCCCcceEEEeCCCCCCEEEEEEEEEeCCcccCCee-eeeecCCCCC-ceeEEEe
Confidence 001222445555666666666666666555443322 2222333332 2377777
Q ss_pred ccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEEEEcCC
Q psy7039 330 VTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSEN 409 (516)
Q Consensus 330 ~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~ 409 (516)
.+.+++.|+|.+|.. ..+.+|. +.|...+.. ...........
T Consensus 198 ~~~~si~l~W~~p~~---~~i~~Y~--------------------------------v~~~~~~~~---~~~~~~~~~~~ 239 (375)
T 3t1w_A 198 IGPDTMRVTWAPPPS---IDLTNFL--------------------------------VRYSPVKNE---EDVAELSISPS 239 (375)
T ss_dssp CCSSCEEEEEECCSS---CCCCEEE--------------------------------EEEEEGGGT---TCCEEEEECTT
T ss_pred cccCEEEEEEcCCCC---CCccEEE--------------------------------EEEEeCCCC---CCcEEEEcCCC
Confidence 899999999998742 3345551 233322210 11222333444
Q ss_pred eEEEEEcCceecCCceEEEEEEEcCCCceeEEEEEEEecCCCCCCCCcccccccCCeEEEEeeCCCCCCCCCcceEEEEE
Q psy7039 410 QTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEK 489 (516)
Q Consensus 410 ~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~v~~~p~~P~~~l~~~~~~~~~~~l~W~~p~~~~~~~i~~Y~v~~ 489 (516)
...+.|.+|.+ ...|.|++.|.|..|.+... ...+...|.+| ..+.+..++.+++.|+|++|. +.+.+|.|+|
T Consensus 240 ~~~~~i~~L~p-~t~Y~~~V~A~~~~g~s~~~-~~~~~t~p~~P-~~l~~~~~~~~sv~l~W~~p~----~~~~~Y~v~~ 312 (375)
T 3t1w_A 240 DNAVVLTNLLP-GTEYVVSVSSVYEQHESTPL-RGRQKTGLDSP-TGIDFSDITANSFTVHWIAPR----ATITGYRIRH 312 (375)
T ss_dssp CCEEEECSCCT-TCEEEEEEEEEETTEECCCE-EEEEECCCCCC-EEEEEESCCSSCEEEEEECCS----SCCSEEEEEE
T ss_pred cCEEEeCCCCC-CCEEEEEEEEEcCCCcCCce-eeEEecCCCCC-CccEeeeccCCEEEEEECCCC----cceeeEEEEE
Confidence 46799999999 99999999999998875443 44456677777 788888889999999999873 6699999999
Q ss_pred EecCC
Q psy7039 490 YESAT 494 (516)
Q Consensus 490 ~~~~~ 494 (516)
+..+.
T Consensus 313 ~~~~~ 317 (375)
T 3t1w_A 313 HPEHF 317 (375)
T ss_dssp EETTC
T ss_pred EECCC
Confidence 98875
|
| >3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D | Back alignment and structure |
|---|
Probab=99.87 E-value=1.7e-21 Score=189.04 Aligned_cols=262 Identities=13% Similarity=0.049 Sum_probs=162.8
Q ss_pred CCCccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEee
Q psy7039 112 LAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQT 191 (516)
Q Consensus 112 ~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~ 191 (516)
.+|.|. ..+. ..+.+|+++.|.|.+. +. .+.+.|++++..+.... ..
T Consensus 23 ~~P~i~-~~p~-~~v~~G~~v~L~C~~~--------------------------~~-~~~~~W~k~g~~~~~~~----~~ 69 (316)
T 3vh8_G 23 DKPFLS-AWPS-AVVPRGGHVTLRCHYR--------------------------HR-FNNFMLYKEDRIHIPIF----HG 69 (316)
T ss_dssp -CCEEE-EESC-SEEETTSCEEEEEEBT--------------------------TB-CCSEEEEESSCSSSCHH----HH
T ss_pred CCCEee-ccCC-CccCCCCCEEEEEEcc--------------------------CC-CceEEEEeCCCccceee----cC
Confidence 466666 3333 5688999999999998 66 67899999987654211 11
Q ss_pred cCCeeEEEeccCCCCCCeeEEEEEEcCCC-----c--eEEEEEeec----eee---eeccccCCceEEEEEEEEccCCCC
Q psy7039 192 TKSETVLDIPFCSRSDTGHYSLTLENNLG-----T--ATASAHVTG----TEF---TDNNVHEGKAYEYRVSAVNAAGTE 257 (516)
Q Consensus 192 ~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g-----~--~~~~~~~~~----~~~---~~~~l~~g~~~~~~~~~~~~~g~p 257 (516)
......|.|.+++.+|+|.|+|.+.+..+ . ....+.+.. ..+ ....+.+|+.+.|.|.+ .+ +
T Consensus 70 ~~~~~~L~I~~v~~~D~G~Y~C~a~~~~~~~~~~~~s~~~~l~V~~~~~~p~~~~~~~~~v~~G~~v~L~C~~---~~-~ 145 (316)
T 3vh8_G 70 RIFQESFNMSPVTTAHAGNYTCRGSHPHSPTGWSAPSNPVVIMVTGNHRKPSLLAHPGPLVKSGERVILQCWS---DI-M 145 (316)
T ss_dssp CCBSSCEEECSCCGGGCEEEEEEEBCSSSSSSBCCCCCCEEEEEECSSCCCEEEEESCSEEETTCCEEEEEEE---SS-C
T ss_pred CcceEEEEECCCCcccCeEEEEEEEcCCCCcceecCCCcEEEEEecCCCCCeEEecCCCccCCCCeEEEEEcC---CC-C
Confidence 23456899999999999999999986322 1 112222211 111 12236789999999987 33 4
Q ss_pred Cceecccccccce--E----EEEEecceeeEEEccCCCCCceEEEEEEEecCCCc-----ceeEEEEEecCCCCCCCCce
Q psy7039 258 KPKISLDALIGKR--I----KEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGID-----MADIEVVVVSKPGPPTGPID 326 (516)
Q Consensus 258 ~p~i~W~~~~~~~--~----~~~~~~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~-----~~~~~l~v~~~p~~p~~p~~ 326 (516)
++.+.|.+..... . ..........|.|.++..+|+|.|+|.|.|..|.. +..+.|.|...+.+|. +.
T Consensus 146 ~~~~~w~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~s~~~~l~V~~~~~~p~--i~ 223 (316)
T 3vh8_G 146 FEHFFLHKEGISKDPSRLVGQIHDGVSKANFSIGPMMLALAGTYRCYGSVTHTPYQLSAPSDPLDIVVTGPYEKPS--LS 223 (316)
T ss_dssp CSEEEEEETTCCSCCEEEECEEETTEEEEEEEECSCCGGGCEEEEEEEECTTCTTBCCCCCCCEEEEEECSSCCCE--EE
T ss_pred CcEEEEEECCCccccceeeeeecCCCceEEEEECCCChhhCceEEEEEecCCCCccccCCCCCEEEEecCCCCCCe--EE
Confidence 5567775421111 1 11112356789999999999999999999987742 4456677765443321 10
Q ss_pred eeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEEEE
Q psy7039 327 YTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFET 406 (516)
Q Consensus 327 ~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~ 406 (516)
+ .....+.+|+.+.|.|.+. .+.+.+.|+++|..+..........
T Consensus 224 ----------~------------------------~~~~~v~~G~~v~L~C~~~-~~~~~~~W~k~g~~~~~~~~~~~~~ 268 (316)
T 3vh8_G 224 ----------A------------------------QPGPKVQAGESVTLSCSSR-SSYDMYHLSREGGAHERRLPAVRKV 268 (316)
T ss_dssp ----------E------------------------ESCSCCCTTSCCEEEEEES-SCCSEEEEEETTSSCCEEEECEECT
T ss_pred ----------e------------------------CCCCeecCCCcEEEEEECC-CCCcEEEEEECCCcCCCceeceecc
Confidence 0 0112457899999999997 4677999999997654221111111
Q ss_pred cC-CeEEEEEcCceecCCceEEEEEEEcCCCc-----eeEEEEEEEecCC
Q psy7039 407 SE-NQTIYRNKSAKRATDSGSYTIQLVNTVGS-----DSASCKVYVVDKP 450 (516)
Q Consensus 407 ~~-~~~~l~i~~~~~~~~~g~y~c~a~n~~G~-----~s~s~~l~v~~~p 450 (516)
.+ ....|.|.++. |+|.|+|.|.|..+. .+..+.|.|..+|
T Consensus 269 ~~~~~~~L~i~~v~---D~G~Y~C~a~n~~~~~~~s~~S~~~~l~V~g~p 315 (316)
T 3vh8_G 269 NRTFQADFPLGPAT---HGGTYRCFGSFRHSPYEWSDPSDPLLVSVTGNP 315 (316)
T ss_dssp TSCEEEEEECC--------CEEEEEEEBTTBTTEECCCCCCEEC------
T ss_pred CCceeEEEEcCCcC---CCEEEEEEeecCCCchhccCCCCcEEEEEeCCC
Confidence 11 22579998885 999999999998763 4555677776654
|
| >1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 | Back alignment and structure |
|---|
Probab=99.87 E-value=2.5e-21 Score=197.10 Aligned_cols=302 Identities=10% Similarity=0.039 Sum_probs=181.7
Q ss_pred CCcEEEeCCCcCCCeEEEEEEEecCCCCC-CCCCCCcceEec-cCCCCCccccCcccceEEecCCeEEEEEeeeeccccc
Q psy7039 68 GETSCTVPGLIEGETYQFQVRAVNAAGPG-EASKPTAPIVAK-PKNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYT 145 (516)
Q Consensus 68 ~~~~~~i~~l~~~~~y~~~~~a~n~~g~~-~~s~~~~~~~~~-~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~ 145 (516)
...+|.|.+++..|.|.|+|.|.|..+.. .... ...+.+. ....+|.+....+. ..+.+|+.+.|.|.+.
T Consensus 77 ~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~-~~~l~V~~~~~~~P~i~~~~~~-~~~~~g~~v~L~C~~~------ 148 (444)
T 1igt_B 77 NTLYLQMSRLKSEDTAMYYCARHGGYYAMDYWGQ-GTTVTVSSAKTTAPSVYPLAPV-CGDTTGSSVTLGCLVK------ 148 (444)
T ss_dssp TEEEEEECSCCGGGCEEEEEEEECSSSCEEEEBC-CEEEEECSCCCBCCEEEEECCC-SSCCCSSCEEEEEEEE------
T ss_pred CeEEEEECCCCHHHCEEEEEEEecCCcccccccC-cEEEEecCCCCCCCceeEeccc-ccCCCCCcEEEEEEEc------
Confidence 35689999999999999999999865431 0111 1223332 22234544322221 2247899999999998
Q ss_pred cCccccccccccCccceeecCc-Cce-eeEEeeCCeeeccCCceEEeecC---CeeEEEeccCCCCCCeeEEEEEEcCCC
Q psy7039 146 KSPLRALGVRANSTKGWVKLSE-PFL-NHGWSINGQVCQIGGRADVQTTK---SETVLDIPFCSRSDTGHYSLTLENNLG 220 (516)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~-p~~-~i~W~~~~~~~~~~~~~~~~~~~---~~~~l~i~~~~~~d~g~Y~c~~~~~~g 220 (516)
+. |.+ .+.|++++..+...........+ ..+.|.|.++..+| |.|+|.+.|..+
T Consensus 149 --------------------g~~P~p~~v~W~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-g~Y~C~a~n~~~ 207 (444)
T 1igt_B 149 --------------------GYFPEPVTLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-QSITCNVAHPAS 207 (444)
T ss_dssp --------------------EEBSSCCEEEEGGGTBCTTEEECCCEEETTEEEEEEEEEECSTTTTT-SCCEEEEEETTT
T ss_pred --------------------ceeCCCcEEEEecCCCCCCeEecCccccCCcEEEEEEEEEchhhcCC-CeEEEEEEeCCC
Confidence 64 665 99999987653211000011111 13579999999999 999999999988
Q ss_pred ceEEEEEeec---------------------eee-e----ecc-ccCCceEEEEEEEEccCCC---C-Cceecccccccc
Q psy7039 221 TATASAHVTG---------------------TEF-T----DNN-VHEGKAYEYRVSAVNAAGT---E-KPKISLDALIGK 269 (516)
Q Consensus 221 ~~~~~~~~~~---------------------~~~-~----~~~-l~~g~~~~~~~~~~~~~g~---p-~p~i~W~~~~~~ 269 (516)
.......+.. ..+ . ... +..|+.+.|.|.+ .|. | .+.+.|.+....
T Consensus 208 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~v~~~~p~~~~~~~~G~~~~L~C~~---~g~~~~p~~~~v~W~k~~~~ 284 (444)
T 1igt_B 208 STKVDKKIEPRGPTIKPCPPCKCPAPNLLGGPSVFIFPPKIKDVLMISLSPIVTCVV---VDVSEDDPDVQISWFVNNVE 284 (444)
T ss_dssp TEEEEEECCCCCCSCCCCCCCSCCCSCCCCCCEEEEECCCHHHHHCTTSCCEEEEEE---EEECTTCCCCEEEEEETTEE
T ss_pred CcceEEEeccCCCCcccCCccccCCcccCCCceEEecCCchhheeecCCCcEEEEEE---eecccCCCCeEEEEEECCcc
Confidence 7644433311 111 1 111 4789999999998 454 2 468999652110
Q ss_pred ------e-EEEEE---ecceeeEEEccCCCCCceEEEEEEEecCCCcceeEEEEEe-cCCCCCCCCceeeeccCCeeEEE
Q psy7039 270 ------R-IKEFV---TSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVV-SKPGPPTGPIDYTTVTPESVSMS 338 (516)
Q Consensus 270 ------~-~~~~~---~~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~~~~l~v~-~~p~~p~~p~~~~~~~~~~~~l~ 338 (516)
. ..... ......|.|.++..+|.|.|+|.|.|..|.......+.+. ....+|. +.+..
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~~~~~v~~~~~~~~~P~--v~~~~--------- 353 (444)
T 1igt_B 285 VHTAQTQTHREDYNSTLRVVSALPIQHQDWMSGKEFKCKVNNKDLPAPIERTISKPKGSVRAPQ--VYVLP--------- 353 (444)
T ss_dssp CSSTTCBCCEEECSSSEEEEEEEECCHHHHHTTCEEEEEEECTTCSSCEEEEEECCCCCCBCCE--EEEEC---------
T ss_pred ccCcccccceeCCCCcEEEEEEEEEcHHHhccCCcEEEEEEcCCCCCceEEEEeccCCCCCCCE--EEEeC---------
Confidence 0 01100 0134589999999999999999999998876433333221 1111110 11000
Q ss_pred ecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeee-cCC-ceEEEECCeecCCCCceEEEEcCC-----eE
Q psy7039 339 WKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGR-PKP-TPIWTVNGDEVSPDGRIKFETSEN-----QT 411 (516)
Q Consensus 339 W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~-p~~-~i~W~~~~~~l~~~~~~~~~~~~~-----~~ 411 (516)
.....+ .+..+.|.|.+.|. |.+ .|.|+++|..+............+ .+
T Consensus 354 -----------------------~~~~~~-~~~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s 409 (444)
T 1igt_B 354 -----------------------PPEEEM-TKKQVTLTCMVTDFMPEDIYVEWTNNGKTELNYKNTEPVLDSDGSYFMYS 409 (444)
T ss_dssp -----------------------CCGGGT-TSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEECTTSCEEEEE
T ss_pred -----------------------CChHHc-cCCeEEEEEEEEeeeCCCCEEEEEECCEEccccccccceeCCCCCEEEEE
Confidence 000011 23459999999985 555 899999998774321111111111 13
Q ss_pred EEEEcCceecCCceEEEEEEEcCCCc
Q psy7039 412 IYRNKSAKRATDSGSYTIQLVNTVGS 437 (516)
Q Consensus 412 ~l~i~~~~~~~~~g~y~c~a~n~~G~ 437 (516)
.|.|..... +|.|.|+|.|.|..-.
T Consensus 410 ~l~i~~~~~-~d~g~YtC~a~n~~l~ 434 (444)
T 1igt_B 410 KLRVEKKNW-VERNSYSCSVVHEGLH 434 (444)
T ss_dssp EEEEEHHHH-HTCCCEEEEEECTTSG
T ss_pred EEEEChHHh-cCCCeEEEEEECCCcC
Confidence 466766666 7799999999998644
|
| >1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1 | Back alignment and structure |
|---|
Probab=99.86 E-value=1.1e-20 Score=191.74 Aligned_cols=287 Identities=11% Similarity=0.069 Sum_probs=185.0
Q ss_pred CcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCc----eeeEEeeCC--eee-----------
Q psy7039 119 STLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPF----LNHGWSING--QVC----------- 181 (516)
Q Consensus 119 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~----~~i~W~~~~--~~~----------- 181 (516)
..+..+.+.+|+++.|.|.+. +.+. +.+.|++++ ..+
T Consensus 6 ~~p~~~~v~~G~~v~L~C~~~--------------------------~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~ 59 (438)
T 1qgc_4 6 QSPASLAVSLGQRATISCRAS--------------------------ESVDSSGHSFMHWYQQKPGQPPKLLIYRASNLE 59 (438)
T ss_dssp EECSEEEECTTSCEEEEEEES--------------------------SCCEETTEECEEEEEECTTSCCEEEESSSSCBC
T ss_pred ecCCeEEeeCCCCEEEEEecC--------------------------CCcccCCcceEEEEEECCCCCcEEEEEECcccC
Confidence 345678899999999999998 7766 489999853 221
Q ss_pred -ccCCceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCce---EEEEEeec----eeeee----ccccCCceEEEEEE
Q psy7039 182 -QIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTA---TASAHVTG----TEFTD----NNVHEGKAYEYRVS 249 (516)
Q Consensus 182 -~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~---~~~~~~~~----~~~~~----~~l~~g~~~~~~~~ 249 (516)
....|+.+...+...+|.|.+++.+|+|.|+|.+.|..+.. ...+.+.. ..+.. ....+|..+.+.|.
T Consensus 60 ~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~~~l~C~ 139 (438)
T 1qgc_4 60 SGIPDRFSGSGSRTDFTLTIDPVEADDVATYYCQQSNEVPLTFGAGTKLDLKRADAAPTVSIFPPSSEQLTSGGASVVCF 139 (438)
T ss_dssp SSCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSTTCCBCCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEE
T ss_pred CCccCcEEEEccCCcEEEEeCCCcCcCCeeEEEEEecCCCccccCceeEEecCCCCCCEEEecCCChhhccCCceEEEEE
Confidence 11356666666677899999999999999999999977532 12233221 11111 11224778999999
Q ss_pred EEccCC-CCCc-eecccccc----cc-eEEEEE--ec-----ceeeEEEccCCCCCceEEEEEEEecCCCcceeEEEEEe
Q psy7039 250 AVNAAG-TEKP-KISLDALI----GK-RIKEFV--TS-----TTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVV 315 (516)
Q Consensus 250 ~~~~~g-~p~p-~i~W~~~~----~~-~~~~~~--~~-----~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~~~~l~v~ 315 (516)
+ .| .|.| .+.|.+.. .. ...... .. ....|.|.++..+|+|.|+|.|.|..+...... .+.
T Consensus 140 ~---~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~--~~~ 214 (438)
T 1qgc_4 140 L---NNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVK--SFN 214 (438)
T ss_dssp E---EEEBSSCEEEEEEETTEEECTTEEEEEECCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEEETTCSSCEEE--EEE
T ss_pred E---ccccCCCcEEEEEECCEEcCCCceeccccccCCCCcEEEEEEEEEeCcccCCCCeEEEEEEecccCCceec--ccc
Confidence 8 44 5767 89997521 11 111111 01 135799999999999999999999887753332 222
Q ss_pred cCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeeec--CCceEEEEC-
Q psy7039 316 SKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRP--KPTPIWTVN- 392 (516)
Q Consensus 316 ~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p--~~~i~W~~~- 392 (516)
..... +.+ ..+....+..|+.+.|.|.+.|.| .+.+.|+++
T Consensus 215 ~~~~~----~~~--------------------------------~~~~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~ 258 (438)
T 1qgc_4 215 RNECE----VML--------------------------------VESGGGLVKPGGSLKLSCTASGFIFNRCAMSWVRQT 258 (438)
T ss_dssp TTC-C----CEE--------------------------------EEECCEEECTTCCEEEEEEEESSCGGGSCEEEEEEE
T ss_pred cccce----eEE--------------------------------ecCCceEEecCCcEEEEEEEcccccCCcEEEEEECC
Confidence 21111 110 012345688999999999999988 679999986
Q ss_pred -CeecC-----------------CCCceEEEEc--CCeEEEEEcCceecCCceEEEEEEEcCCC-----ceeEEEEEEEe
Q psy7039 393 -GDEVS-----------------PDGRIKFETS--ENQTIYRNKSAKRATDSGSYTIQLVNTVG-----SDSASCKVYVV 447 (516)
Q Consensus 393 -~~~l~-----------------~~~~~~~~~~--~~~~~l~i~~~~~~~~~g~y~c~a~n~~G-----~~s~s~~l~v~ 447 (516)
+..+. ...++.+... .....|.|.++.. .|+|.|+|.|.|..| .......+.|.
T Consensus 259 ~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~-~D~G~Y~C~a~n~~~~~~~~~~~~~~~l~V~ 337 (438)
T 1qgc_4 259 PEKRLEWVATISSGGTYTYYPDSVKGRFTISRDNAKNTLYLQMSSLRS-ADTAMYYCVRREDGGDEGFAYWGQGTVVTVS 337 (438)
T ss_dssp TTTEEEEEEEECTTSCCEECCGGGTTTEEEEEETTTTEEEEEECSCCG-GGCCEEEEEECCSSSCCCCCSBCCCEEEEEC
T ss_pred CCCCcEEEEEEeecCCceecCcccCCcEEEEeecCCCeEEEEECCCCh-hhCEEEEEEEEccCCCccceeeCCCEEEEEe
Confidence 43221 1345655543 3456899999999 999999999999554 22234567776
Q ss_pred cCC-CCCCC---CcccccccCCeEEEEeeC
Q psy7039 448 DKP-SPPQG---PLDVSDITPESCSLSWKP 473 (516)
Q Consensus 448 ~~p-~~P~~---~l~~~~~~~~~~~l~W~~ 473 (516)
..+ .+|.. ........++.++|.+..
T Consensus 338 ~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~ 367 (438)
T 1qgc_4 338 AAKTTPPSVYPLAPGSAAAAASMVTLGCLV 367 (438)
T ss_dssp SSCCBCCEEEEECCCGGGCCSSEEEEEEEE
T ss_pred cCCCCCCeEEEcCcccccccCCcEEEEEEe
Confidence 422 22310 001122356778888764
|
| >2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=4.3e-19 Score=192.05 Aligned_cols=339 Identities=17% Similarity=0.178 Sum_probs=176.9
Q ss_pred CCCCCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCCCeEEeEEeecCCcEEEeCCCcCCCeEEEEEEEe-
Q psy7039 12 DEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVVVPAGETSCTVPGLIEGETYQFQVRAV- 90 (516)
Q Consensus 12 ~~p~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~~~a~- 90 (516)
.+|.+|..+.+..++.+++.|+|.++..+++++|.+|.|+|+..++.|...... ...+++|.+|.+++.|.|+|.|.
T Consensus 260 ~~P~~~~~p~~~~~~~~~v~l~w~~~~~~g~~~i~~Y~v~~~~~~~~~~~~~~~--~~~~~~i~~L~p~t~Y~~~V~A~~ 337 (731)
T 2v5y_A 260 EPPVPIAPPQLASVGATYLWIQLNANSINGDGPIVAREVEYCTASGSWNDRQPV--DSTSYKIGHLDPDTEYEISVLLTR 337 (731)
T ss_dssp CCCCBSSCCEEEEECSSCEEEECCCSSBSSCSCCCEEEEEEEESSSSCEEEEEC--CSSEEEECSCCTTCEEEEEEEEEC
T ss_pred cCCCCCCCcceeccCCceEEEEeCCcccCCCCccEEEEEEEEECCCCceEEecc--CcceEEEeCCCCCCEEEEEEEEEe
Confidence 456666677777788999999999876667788999999999877788766543 56899999999999999999999
Q ss_pred -cCCCCCCCCCCCcceEeccCCCCCccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCc
Q psy7039 91 -NAAGPGEASKPTAPIVAKPKNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPF 169 (516)
Q Consensus 91 -n~~g~~~~s~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 169 (516)
|..|.+.++.... .......|. ..+. .|.+... +...
T Consensus 338 ~N~~G~s~~S~~~~---~~t~~~~p~---~~P~----------~~~~~~~--------------------------~~~s 375 (731)
T 2v5y_A 338 PGEGGTGSPGPALR---TRTKCADPM---RGPR----------KLEVVEV--------------------------KSRQ 375 (731)
T ss_dssp SSTTCSCCBCCCEE---EECCCCCCS---CCCE----------EEEEEEE--------------------------CSSC
T ss_pred cCCCccccCCCcEE---eeecCCCCC---CCCc----------eeEEEec--------------------------cCCe
Confidence 9999887665432 222211111 1222 2223333 4456
Q ss_pred eeeEEeeCCeeeccCCceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEEeeceeeeeccccCCceEEEEEE
Q psy7039 170 LNHGWSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVTGTEFTDNNVHEGKAYEYRVS 249 (516)
Q Consensus 170 ~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~~~~~~~~~~l~~g~~~~~~~~ 249 (516)
..+.|............ -.|........+.... ...-.
T Consensus 376 v~l~W~~p~~~~~~~~~----------------------~~y~v~y~~~~~~~~~--------------------~~~~~ 413 (731)
T 2v5y_A 376 ITIRWEPFGYNVTRCHS----------------------YNLTVHYCYQVGGQEQ--------------------VREEV 413 (731)
T ss_dssp EEEEEECCCHHHHCSSS----------------------CEEEEEEEEESSSSEE--------------------EEEEE
T ss_pred EEEEEECCCccccccee----------------------eeEEEEEEEccCCCCc--------------------cceeE
Confidence 77888764322111100 0233332211100000 00000
Q ss_pred EEccCCCCCceecccccccceEEEEEecceeeEEEccCCCCCceEEEEEEEecCCCcceeEEEEEecCCCCCCCC--cee
Q psy7039 250 AVNAAGTEKPKISLDALIGKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGP--IDY 327 (516)
Q Consensus 250 ~~~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~p~~p--~~~ 327 (516)
... . ......+.|.+|.+...|.|++.|.|..|... +..+.+......|..| +.+
T Consensus 414 ~~~-~---------------------~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~s~-S~~~~~~T~~~~P~~p~~~~~ 470 (731)
T 2v5y_A 414 SWD-T---------------------ENSHPQHTITNLSPYTNVSVKLILMNPEGRKE-SQELIVQTDEDLPGAVPTESI 470 (731)
T ss_dssp ECC-S---------------------SCSSCEEEECSCCSSCEEEEEEEEECSSCEEE-CCCEEEECCCCCCCCCCTTTC
T ss_pred EEE-e---------------------cCCcceEEECCCCCCCEEEEEEEEEcCCCCCC-CceEEEEccCCCCCCCCcceE
Confidence 000 0 01223456677777777777777777776643 3344454443333322 233
Q ss_pred eec-cCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeeecCCceEEEECCe---ecC-CCCce
Q psy7039 328 TTV-TPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGD---EVS-PDGRI 402 (516)
Q Consensus 328 ~~~-~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~---~l~-~~~~~ 402 (516)
... ..+++.|+|++|...+| .|.+|. |.|...+. ... .....
T Consensus 471 ~~~~~~~si~l~W~~P~~~~g-~i~~Y~--------------------------------V~~~~~~~~~~~~~~~~~~~ 517 (731)
T 2v5y_A 471 QGSTFEEKIFLQWREPTQTYG-VITLYE--------------------------------ITYKAVSSFDPEIDLSNQSG 517 (731)
T ss_dssp EEEEETTEEEEECCCCSCCSS-CCCEEE--------------------------------EEEEEEEECC---CCCCCEE
T ss_pred EeeecCCeEEEEEcCCCCCCC-CccceE--------------------------------EEEEECcCCCccccccCcce
Confidence 322 47899999999987766 687872 11111100 000 01112
Q ss_pred EEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEEEEecCCCCCCCC--cc--cccccCCeEEEEeeCCCCCC
Q psy7039 403 KFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQGP--LD--VSDITPESCSLSWKPPLDDG 478 (516)
Q Consensus 403 ~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~v~~~p~~P~~~--l~--~~~~~~~~~~l~W~~p~~~~ 478 (516)
..........++|.+|.+ ...|.|++.|.|..|.+..+. +.+.+.+.+|..+ +. ....+.+++.|+|++|. ++
T Consensus 518 ~~~~~~~~~~~~i~~L~p-~t~Y~~~V~A~n~~G~g~~s~-~~~~T~~~~P~~p~~~~~~~~~~~~~si~l~W~pp~-~~ 594 (731)
T 2v5y_A 518 RVSKLGNETHFLFFGLYP-GTTYSFTIRASTAKGFGPPAT-NQFTTKISAPSMPAYELETPLNQTDNTVTVMLKPAH-SR 594 (731)
T ss_dssp EEEEETTCCEEEECSCCT-TEEEEEEEEEEETTEEEEEEE-EEEECCCCCCCC---------------------------
T ss_pred EEeecCCcceEEecCCCC-CCEEEEEEEEEeCCccCCCcc-cEEEcCCCCCCCCCcccccccccCCceEEEEEeCCC-CC
Confidence 223334456799999999 999999999999999876663 5566555444221 11 24467789999999884 77
Q ss_pred CCCcceEEEEEEecCCC
Q psy7039 479 GSPITNYVVEKYESATG 495 (516)
Q Consensus 479 ~~~i~~Y~v~~~~~~~~ 495 (516)
+++|.+|.|+|++....
T Consensus 595 ~g~I~~Y~v~~~~~~~~ 611 (731)
T 2v5y_A 595 GAPVSVYQIVVEEERPR 611 (731)
T ss_dssp -----------------
T ss_pred CCceEEEEEEEEecCCC
Confidence 88999999999877543
|
| >2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A | Back alignment and structure |
|---|
Probab=99.85 E-value=1.9e-19 Score=161.65 Aligned_cols=192 Identities=20% Similarity=0.291 Sum_probs=144.3
Q ss_pred CCCccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccC-CceEEe
Q psy7039 112 LAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIG-GRADVQ 190 (516)
Q Consensus 112 ~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~-~~~~~~ 190 (516)
.+|.|. ..+..+.+.+|+.+.|.|.+. +.|.+.+.|++++..+... .++.+.
T Consensus 3 ~~P~~~-~~~~~~~v~~G~~v~l~C~~~--------------------------~~p~~~v~W~~~~~~~~~~~~~~~~~ 55 (197)
T 2j8h_A 3 MAPHFK-EELRNLNVRYQSNATLVCKVT--------------------------GHPKPIVKWYRQGKEIIADGLKYRIQ 55 (197)
T ss_dssp CCCEEE-ECCCCEEEETTSCEEEEEEEE--------------------------CSSCCEEEEEETTEECCCCSSSEEEE
T ss_pred CCCEEE-EcCCccEEcCCCEEEEEEEEe--------------------------ecCCCEEEEEECCEECccCCCcEEEE
Confidence 467776 566778999999999999999 8999999999988776432 111111
Q ss_pred ecCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEEeeceeeeeccccCCceEEEEEEEEccCCCCCceecccccccce
Q psy7039 191 TTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVTGTEFTDNNVHEGKAYEYRVSAVNAAGTEKPKISLDALIGKR 270 (516)
Q Consensus 191 ~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~g~p~p~i~W~~~~~~~ 270 (516)
..
T Consensus 56 ~~------------------------------------------------------------------------------ 57 (197)
T 2j8h_A 56 EF------------------------------------------------------------------------------ 57 (197)
T ss_dssp EE------------------------------------------------------------------------------
T ss_pred Ec------------------------------------------------------------------------------
Confidence 00
Q ss_pred EEEEEecceeeEEEccCCCCCceEEEEEEEecCCCcceeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCce
Q psy7039 271 IKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPI 350 (516)
Q Consensus 271 ~~~~~~~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i 350 (516)
......|.|.++..+|+|.|+|.+.|..|.....+.|.|...|.....+.
T Consensus 58 -----~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~l~V~~~p~~~~~~~------------------------- 107 (197)
T 2j8h_A 58 -----KGGYHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKT------------------------- 107 (197)
T ss_dssp -----TTTEEEEEECSCCGGGCSEEEEEEEETTEEEEEEEEEEEEEEEEECCSSC-------------------------
T ss_pred -----CCCEEEEEECcCCHHhCEEEEEEEEECCCceeEEEEEEEcCCCcCCCCcc-------------------------
Confidence 01123566677777777777777777766666666666665443221100
Q ss_pred eeccccccccccccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcC-ceecCCceEEEE
Q psy7039 351 TGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKS-AKRATDSGSYTI 429 (516)
Q Consensus 351 ~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~-~~~~~~~g~y~c 429 (516)
...+....+..|+.+.|.|.+.|.|.+.+.|++++..+....++.+........|.|.+ +.. .|.|.|+|
T Consensus 108 --------~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~-~d~G~Y~C 178 (197)
T 2j8h_A 108 --------LEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVER-KDAGFYVV 178 (197)
T ss_dssp --------BTTBEEEEEETTCCCEEEEEEEEESCCEEEEEESSCEECSSSSCEEEECSSEEEEECTTCCCG-GGCEEEEE
T ss_pred --------ccccCeEEEeCCCEEEEEEEEEecCCCcEEEEECCEEeecCCCEEEEEcCCceEEEEeCCCCc-ccCEeEEE
Confidence 01234567889999999999999999999999999998878888887777888999999 999 99999999
Q ss_pred EEEcCCCceeEEEEEEEe
Q psy7039 430 QLVNTVGSDSASCKVYVV 447 (516)
Q Consensus 430 ~a~n~~G~~s~s~~l~v~ 447 (516)
.|.|..|..+.++.|.|.
T Consensus 179 ~a~N~~g~~~~~~~l~V~ 196 (197)
T 2j8h_A 179 CAKNRFGIDQKTVELDVA 196 (197)
T ss_dssp EEEETTEEEEEEEEEEEE
T ss_pred EEEeCCCcEeEEEEEEEe
Confidence 999999999888888886
|
| >3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=2e-19 Score=161.13 Aligned_cols=190 Identities=21% Similarity=0.325 Sum_probs=145.1
Q ss_pred CCCccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEee
Q psy7039 112 LAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQT 191 (516)
Q Consensus 112 ~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~ 191 (516)
.+|.+. ..+..+.+.+|+.+.|.|.+. +.|.+.+.|++++..+....++.+..
T Consensus 6 ~~P~~~-~~~~~~~v~~G~~v~l~C~~~--------------------------~~p~~~v~W~~~~~~~~~~~~~~~~~ 58 (197)
T 3lcy_A 6 EAPGIR-KEMKDVTTKLGEAAQLSCQIV--------------------------GRPLPDIKWYRFGKELIQSRKYKMSS 58 (197)
T ss_dssp EEEEEE-ECCCCEEEETTSEEEEEEEEE--------------------------EESCCEEEEEETTEEECCCSSEEEEE
T ss_pred CCCccc-ccCCceEEeCCCcEEEEEEEe--------------------------cCCCCEEEEEECCEECCCCccEEEEe
Confidence 356665 566778999999999999999 88999999999999887777777766
Q ss_pred cCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEEeeceeeeeccccCCceEEEEEEEEccCCCCCceecccccccceE
Q psy7039 192 TKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVTGTEFTDNNVHEGKAYEYRVSAVNAAGTEKPKISLDALIGKRI 271 (516)
Q Consensus 192 ~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~g~p~p~i~W~~~~~~~~ 271 (516)
.+...+|.|.+++.+|+|.|+|.+.|..|...
T Consensus 59 ~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~------------------------------------------------ 90 (197)
T 3lcy_A 59 DGRTHTLTVMTEEQEDEGVYTCIATNEVGEVE------------------------------------------------ 90 (197)
T ss_dssp SSSEEEEEEECCSGGGCEEEEEEEECSSCEEE------------------------------------------------
T ss_pred CCCEEEEEEecCCccCCEEEEEEEECCCCcee------------------------------------------------
Confidence 66666777777777777777777766544322
Q ss_pred EEEEecceeeEEEccCCCCCceEEEEEEEecCCCcceeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCcee
Q psy7039 272 KEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPIT 351 (516)
Q Consensus 272 ~~~~~~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~ 351 (516)
....+.|...|......
T Consensus 91 ------------------------------------~~~~l~v~~~p~~~~~~--------------------------- 107 (197)
T 3lcy_A 91 ------------------------------------TSSKLLLQATPQFHPGY--------------------------- 107 (197)
T ss_dssp ------------------------------------EEEEEEEEEEEEECTTS---------------------------
T ss_pred ------------------------------------EEEEEEEEcCCCCCCCc---------------------------
Confidence 11222222211111000
Q ss_pred eccccccccccccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCce-ecCCceEEEEE
Q psy7039 352 GAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAK-RATDSGSYTIQ 430 (516)
Q Consensus 352 ~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~-~~~~~g~y~c~ 430 (516)
.......+..|+.+.|.|.+.+.|.+.+.|++++..+....++.+........|.|.++. . +|.|.|+|.
T Consensus 108 --------~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~-~d~G~Y~C~ 178 (197)
T 3lcy_A 108 --------PLKEKYYGAVGSTLRLHVMYIGRPVPAMTWFHGQKLLQNSENITIENTEHYTHLVMKNVQRK-THAGKYKVQ 178 (197)
T ss_dssp --------CCCSEEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEECSSEEEEEESSCCHH-HHCEEEEEE
T ss_pred --------cCCcceeecCCCeEEEEEEEeeeeCCeeEEeECCEECCCCCceEEEEcCCEEEEEEccccch-hhCceEEEE
Confidence 012335677899999999999999999999999999988888888877777899999998 5 799999999
Q ss_pred EEcCCCceeEEEEEEEec
Q psy7039 431 LVNTVGSDSASCKVYVVD 448 (516)
Q Consensus 431 a~n~~G~~s~s~~l~v~~ 448 (516)
|.|..|....++.|.|.+
T Consensus 179 a~n~~g~~~~~~~l~V~~ 196 (197)
T 3lcy_A 179 LSNVFGTVDAILDVEIQD 196 (197)
T ss_dssp EECSSCEEEEEEEEEEEC
T ss_pred EEcCcCceEEEEEEEEec
Confidence 999999999999998875
|
| >1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C region, hinge region, immunoglobulin; HET: NAG FUL NDG BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 | Back alignment and structure |
|---|
Probab=99.84 E-value=1e-21 Score=199.49 Aligned_cols=300 Identities=7% Similarity=0.048 Sum_probs=181.5
Q ss_pred CCcEEEeCCCcCCCeEEEEEEEecCCCCCCCCCCCcceEec-cCCCCCccccCcccceEEecCCeEEEEEeeeecccccc
Q psy7039 68 GETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAK-PKNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTK 146 (516)
Q Consensus 68 ~~~~~~i~~l~~~~~y~~~~~a~n~~g~~~~s~~~~~~~~~-~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~ 146 (516)
...+|.|.+++..|.|.|+|.|.|..+.. .. ...+.+. ....+|.+....+ ...+.+|+.+.|.|.+.
T Consensus 76 ~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~--~~-~~~l~V~~~~~~~P~i~~~~~-~~~~~~G~~v~L~C~~~------- 144 (434)
T 1igy_B 76 NTANIHLSSLTSDDSAVYYCVREGEVPYW--GQ-GTTVTVSSAKTTPPSVYPLAP-GSAAQTNSMVTLGCLVK------- 144 (434)
T ss_dssp CBBCEEECSBCGGGCSEECCCCSSSSCCC--CC-CEECEECCSCCBCCCEEEECC-CCCCCCTTEEEEEEEEE-------
T ss_pred CEEEEEECCCChHHCEEEEEEEEcccccc--CC-ceEEEEccCCCCCCeEEEcCC-ccccCCCCcEEEEEEEe-------
Confidence 34589999999999999999998843221 11 1122222 2223455442222 22357899999999999
Q ss_pred CccccccccccCccceeecCc-Cce-eeEEeeCCeeeccCCceEEeecC---CeeEEEeccCCCCCCeeEEEEEEcCCCc
Q psy7039 147 SPLRALGVRANSTKGWVKLSE-PFL-NHGWSINGQVCQIGGRADVQTTK---SETVLDIPFCSRSDTGHYSLTLENNLGT 221 (516)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~-p~~-~i~W~~~~~~~~~~~~~~~~~~~---~~~~l~i~~~~~~d~g~Y~c~~~~~~g~ 221 (516)
+. |.+ .+.|++++..+...........+ ..+.|.|.+++.+| |.|+|.+.|..+.
T Consensus 145 -------------------g~~P~p~~v~W~k~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-g~Y~C~a~n~~~~ 204 (434)
T 1igy_B 145 -------------------GYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSPRPS-ETVTCNVAHPASS 204 (434)
T ss_dssp -------------------EEBSSCCEEEETTTTBCSSEEECCCEECSSCEEEEEEEEEETTTTTS-SCCEEEEECTTTT
T ss_pred -------------------eecCCCeEEEEeeCCcCCCeEecCceecCCcEEEEEEEEEcchhcCC-CcEEEEEEeCCCC
Confidence 64 665 99999988653210000011011 12479999999989 9999999999887
Q ss_pred eEEEEEeec---------------ee-ee-e---cc-ccCCceEEEEEEEEccCCCC----CceecccccccceE-----
Q psy7039 222 ATASAHVTG---------------TE-FT-D---NN-VHEGKAYEYRVSAVNAAGTE----KPKISLDALIGKRI----- 271 (516)
Q Consensus 222 ~~~~~~~~~---------------~~-~~-~---~~-l~~g~~~~~~~~~~~~~g~p----~p~i~W~~~~~~~~----- 271 (516)
......+.. .. +. . .. +..|+...+.|.+ .|.+ .+.+.|.+......
T Consensus 205 ~~~~~~~~~~~~~~~v~~~~~~~~p~v~~~~p~~~~~v~~G~~~~L~C~~---~g~~p~P~~~~i~W~k~~~~~~~~~~~ 281 (434)
T 1igy_B 205 TKVDKKIVPRDCGCKPCICTVPEVSSVFIFPPKPKDTLLITVTPKVTCVV---VDISKDDPEVQFSWFVDNVEVHTAQTQ 281 (434)
T ss_dssp CCEEEECCCCCCCCCCCCCCCSSSCCEEEECCCHHHHHSTTSCCEEEEEE---CCCCSSCCCCCBCBBSSSCCBCCCSCC
T ss_pred ccceeeccCCCCCCccccCCCCcCcEEEEeCCChHHhcccCCCcEEEEEE---eccccCCCCeEEEEEeCCcccCCcccC
Confidence 543333211 01 11 1 11 7889999999998 5663 45899976321110
Q ss_pred EE-EE----ecceeeEEEccCCCCCceEEEEEEEecCCCcceeEEEEEe-cCCCCCCCCceeeeccCCeeEEEecCCCCC
Q psy7039 272 KE-FV----TSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVV-SKPGPPTGPIDYTTVTPESVSMSWKPPVDD 345 (516)
Q Consensus 272 ~~-~~----~~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~~~~l~v~-~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~ 345 (516)
.. .. ......|.|.++..+|.|.|+|.|.|..|.......+.+. ....+|. +.+..
T Consensus 282 ~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~v~~~~~~~~~P~--v~~~~---------------- 343 (434)
T 1igy_B 282 PREEQFNSTFRVVSALPIMHQDWLNGKEFKCRVNSAAFPAPIEKTISKTKGKPRAPQ--VYTIP---------------- 343 (434)
T ss_dssp CCCCCCSSSCCCCCCEECCHHHHHHTCCCBCCBCCSSCSSCCCCCCCCCCSCCBCCC--CEEEC----------------
T ss_pred cceeCCCCcEEEEEEEEECHHHccCCCcEEEEEECCCCCCceeEEEeccCCCCcCCE--EEEEC----------------
Confidence 00 00 0123478999999999999999999988865332222210 1111111 11100
Q ss_pred CCCceeeccccccccccccEEEEcCCeEEEEEEEeeecCC--ceEEEECCeecCCCCceEEEEcCC-----eEEEEEcCc
Q psy7039 346 GGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKP--TPIWTVNGDEVSPDGRIKFETSEN-----QTIYRNKSA 418 (516)
Q Consensus 346 ~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~--~i~W~~~~~~l~~~~~~~~~~~~~-----~~~l~i~~~ 418 (516)
.......|..+.|.|.+.|.+++ .|.|+++|..+............+ .+.|.|...
T Consensus 344 -----------------~~~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~l~i~~~ 406 (434)
T 1igy_B 344 -----------------PPKEQMAKDKVSLTCMITDFFPEDITVEWQSDGQAPENYKNTQPIMDTDGSYFVYSKLNVQKS 406 (434)
T ss_dssp -----------------CCSSSSSSSEEEEEEEEEEEBCSCEEEEEEETTSCCSCCEECCCCCCSSSCEEEEEEEEEEHH
T ss_pred -----------------CCHHHhcCCcEEEEEEEEeeECCCeEEEEEECCEecCCceeccceeCCCCcEEEEEEEEECch
Confidence 00012246679999999996543 899999998774321111100111 135777777
Q ss_pred eecCCceEEEEEEEcCCCc
Q psy7039 419 KRATDSGSYTIQLVNTVGS 437 (516)
Q Consensus 419 ~~~~~~g~y~c~a~n~~G~ 437 (516)
.. +|.|.|+|.|.|....
T Consensus 407 ~~-~~~g~YtC~a~n~~l~ 424 (434)
T 1igy_B 407 NW-EAGNTFTCSVLHEGLH 424 (434)
T ss_dssp HH-HTTCCEEEEEEETTSG
T ss_pred hc-cCCCEEEEEEEcCCCC
Confidence 77 7899999999998754
|
| >2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.9e-20 Score=181.39 Aligned_cols=222 Identities=18% Similarity=0.210 Sum_probs=159.8
Q ss_pred CCcEEEeCCCcCCCeEEEEEEEecCCCCCCCCCCCcceEeccCCCCCccccCcccceEEecCCeEEEEEeeeeccccccC
Q psy7039 68 GETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKS 147 (516)
Q Consensus 68 ~~~~~~i~~l~~~~~y~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~ 147 (516)
....|.|.+++..|.|.|+|.|.|..|.... ...+.+. .+|.+. ..+....+..|+.+.|.|...+
T Consensus 59 ~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~~---~~~l~v~---~~~~~~-~~~~~~~~~~g~~~~l~c~~~~------- 124 (317)
T 2y25_A 59 GICTLLITEFSKKDAGIYEVILKDDRGKDKS---RLKLVDE---AFKELM-MEVCKKIALSATDLKIQSTAEG------- 124 (317)
T ss_dssp CCEEEEETTCCSTTCSCEEEEEESSSCEEEE---EECCSTH---HHHHHH-HHHHHHHHTCBCCCEEEECSSE-------
T ss_pred CeEEEEEccCCcccCeEEEEEEECCCCcEEE---EEEEEEe---cCcccc-ccCCceecccCCCeEEEeeccc-------
Confidence 3578999999999999999999998775321 1111111 122222 2223344567778888887760
Q ss_pred ccccccccccCccceeecC-cCceeeEEeeCCeeeccCCceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEE
Q psy7039 148 PLRALGVRANSTKGWVKLS-EPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASA 226 (516)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~-~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~ 226 (516)
.. +.-...+ .|.+.+.|++++..+....++.+...+....|.|.+++.+|+|.|+|.+.|..|......
T Consensus 125 ------~~----l~c~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~ 194 (317)
T 2y25_A 125 ------IQ----LYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTV 194 (317)
T ss_dssp ------EE----EEEEBSSCCSSCEEEEEESSSBCCCCSSEEEEECSSEEEEEEESCCGGGCEEEEEEEECSSCEEEEEE
T ss_pred ------cE----EEEEeccCCCCcEEEEEECCEECCCCCCeEEeccCCEEEEEECcCCcccCeeEEEEEEeCCceEEEEE
Confidence 00 0000001 688999999999999888888887777788899999999999999999999988877766
Q ss_pred Eeecee-----------------------e-----eeccccCCceEEEEEEEEccCCCCCceeccccc-----ccceEEE
Q psy7039 227 HVTGTE-----------------------F-----TDNNVHEGKAYEYRVSAVNAAGTEKPKISLDAL-----IGKRIKE 273 (516)
Q Consensus 227 ~~~~~~-----------------------~-----~~~~l~~g~~~~~~~~~~~~~g~p~p~i~W~~~-----~~~~~~~ 273 (516)
.+.... + ....+..|+.+.|.|.+ .|.|.|.+.|.+. ...+..+
T Consensus 195 ~l~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~---~g~p~p~i~W~~~g~~~~~~~~~~~ 271 (317)
T 2y25_A 195 DLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNV---WGDPPPEVSWLKNEKALASDDHCNL 271 (317)
T ss_dssp EECHHHHHHHHHHHHHHHHHHHHTTTSCEEEEBCCSEEEEETTSBBCEEEEE---ECSSCCEEEEEESSSEECCCSSEEE
T ss_pred EEeeeeccccchhhcccCCcccCcCCCCcccccCCccEEEEcCCEEEEEEEE---ecCCCCEEEEEECCEeCCCCCcEEE
Confidence 544221 0 12356789999999998 7889999999652 2223333
Q ss_pred EEe-cceeeEEEccCCCCCceEEEEEEEecCCCcceeEEEEEec
Q psy7039 274 FVT-STTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVS 316 (516)
Q Consensus 274 ~~~-~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~~~~l~v~~ 316 (516)
... +....|.|.++..+|+|.|+|.|.|..|.....+.|.|..
T Consensus 272 ~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~ 315 (317)
T 2y25_A 272 KFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVFI 315 (317)
T ss_dssp CCBTTTEEEEEEBSCCSTTCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred EEcCCCEEEEEECCCCHHHCEEEEEEEEeCCCeEEEEEEEEEEc
Confidence 222 4456999999999999999999999999998888888864
|
| >1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A | Back alignment and structure |
|---|
Probab=99.84 E-value=2.2e-19 Score=171.64 Aligned_cols=213 Identities=15% Similarity=0.134 Sum_probs=153.8
Q ss_pred CCcEEEeCCCcCCCeEEEEEEEecCCCCCCCCCCCcceEeccCCCCCccccCcccceEEecCCeEEEEEeeeeccccccC
Q psy7039 68 GETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKS 147 (516)
Q Consensus 68 ~~~~~~i~~l~~~~~y~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~ 147 (516)
....|.|.+++..|.|.|+|.|.|..|... .....+.+. .+|.+. ..+....+.+|+.+.|.|.+.
T Consensus 60 ~~~~L~i~~~~~~D~G~Y~C~~~n~~g~~~--~~~~~l~v~---~~~~~~-~~~~~~~~~~g~~v~l~C~~~-------- 125 (291)
T 1qz1_A 60 DSSTLTIYNANIDDAGIYKCVVTAEDGTQS--EATVNVKIF---QKLMFK-NAPTPQEFKEGEDAVIVCDVV-------- 125 (291)
T ss_dssp TEEEEEECSCCGGGCEEEEEEEECTTSCEE--EEEEEEEEE---CCSEEE-ECCSSEEEETTSCEEECCEEE--------
T ss_pred CeEEEEEecCCCCCCEEEEEEEEcCCCCee--EEEEEEEee---cccccc-CCCCcccccCCCeEEEEEEec--------
Confidence 467899999999999999999999875321 112222222 345554 455667899999999999999
Q ss_pred ccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCceEE--E
Q psy7039 148 PLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATA--S 225 (516)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~--~ 225 (516)
+.|.+.+.|++++..+......++... ....|.|.+++.+|+|.|+|.+.|..+.... .
T Consensus 126 ------------------~~p~~~v~W~~~~~~~~~~~~~~~~~~-~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~ 186 (291)
T 1qz1_A 126 ------------------SSLPPTIIWKHKGRDVILKKDVRFIVL-SNNYLQIRGIKKTDEGTYRCEGRILARGEINFKD 186 (291)
T ss_dssp ------------------CSSCCEEEEEETTSCSSTTCCTTEEEC-TTSCEEETTCCGGGCEEEEEEEEEGGGTEEEEEE
T ss_pred ------------------cCCCCEEEEEECCEEcccCCCceEEEc-cCCcEEEccCccccCeEEEEEEEecCCCceeeEE
Confidence 899999999999987754332222211 2347999999999999999999987644322 2
Q ss_pred EEeece---ee------eeccccCCceEEEEEEEEccCCCCCceeccccccc----ce---EEEEEecceeeEEEccCCC
Q psy7039 226 AHVTGT---EF------TDNNVHEGKAYEYRVSAVNAAGTEKPKISLDALIG----KR---IKEFVTSTTASLNIKNSVR 289 (516)
Q Consensus 226 ~~~~~~---~~------~~~~l~~g~~~~~~~~~~~~~g~p~p~i~W~~~~~----~~---~~~~~~~~~~~l~i~~l~~ 289 (516)
..+... .+ ....+..|..+.|.|.+ .|.|.|.+.|.+... .. ...........|.|.++..
T Consensus 187 ~~l~v~~~p~~~~~~~~~~~~~~~g~~v~l~C~~---~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~v~~ 263 (291)
T 1qz1_A 187 IQVIVNVPPTVQARQSIVNATANLGQSVTLVCDA---DGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDK 263 (291)
T ss_dssp EEEEEEEEEEEEESCSEEEEETTSCCCEEEEEEE---EEESCCEEEEEETTEECCCC--CCSSEEECTTSCEEEECSCCG
T ss_pred EEEEEecCCcccccccccccccccCceEEEEEEE---EEeCCCcEEEEECCEECcCCCCCCcceEEcCCCcEEEEEecCh
Confidence 221111 11 12356789999999998 788999999965211 10 1223344567899999999
Q ss_pred CCceEEEEEEEecCCCcceeEEEEEec
Q psy7039 290 KDSGIYKIEAKNDYGIDMADIEVVVVS 316 (516)
Q Consensus 290 ~d~g~y~c~a~n~~g~~~~~~~l~v~~ 316 (516)
+|+|.|+|.|.|..|.....+.|.|..
T Consensus 264 ~d~G~Y~C~a~N~~G~~~~~~~l~V~~ 290 (291)
T 1qz1_A 264 NDEAEYVCIAENKAGEQDASIHLKVFA 290 (291)
T ss_dssp GGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred hcCEEEEEEEEeCCCceEEEEEEEEEc
Confidence 999999999999999988888888764
|
| >2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.8e-19 Score=172.27 Aligned_cols=211 Identities=16% Similarity=0.185 Sum_probs=149.9
Q ss_pred CCcEEEeCCCcCCCeEEEEEEEecCCCCCCCCCCCcceEeccCCCCCccccCcccceEEecCCeEEEEEeeeeccccccC
Q psy7039 68 GETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKS 147 (516)
Q Consensus 68 ~~~~~~i~~l~~~~~y~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~ 147 (516)
....|.|.+++..|.|.|+|.|.|..|.... ....+.+. .+|.+. ..+....+.+|+.+.|.|.+.
T Consensus 58 ~~~~L~i~~~~~~D~G~Y~C~~~n~~g~~~~--~~~~l~v~---~~~~~~-~~~~~~~v~~G~~v~l~C~~~-------- 123 (291)
T 2wim_A 58 VRSRLTIYNANIEDAGIYRCQATDAKGQTQE--ATVVLEIY---QKLTFR-EVVSPQEFKQGEDAEVVCRVS-------- 123 (291)
T ss_dssp TEEEEEECSCCGGGCEEEEEEEECSSSCEEE--EEEEEEEE---CCCBCC-SCCCSEEEETTSCEEECCCCB--------
T ss_pred CEEEEEEccCCcccCEEEEEEEecccCceEE--EEEEEEec---CCcceE-eCCCChhhcCCCCEEEEEEEc--------
Confidence 3568999999999999999999998765321 12222222 244444 455667899999999999999
Q ss_pred ccccccccccCccceeecCcCceeeEEeeCCeeecc--CCceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEE
Q psy7039 148 PLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQI--GGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATAS 225 (516)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~--~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~ 225 (516)
+.|.+.+.|++++..+.. ..++.+. ....|.|.+++.+|+|.|+|.+.+..+.....
T Consensus 124 ------------------~~p~~~v~W~~~~~~~~~~~~~~~~~~---~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~~~ 182 (291)
T 2wim_A 124 ------------------SSPAPAVSWLYHNEEVTTISDNRFAML---ANNNLQILNINKSDEGIYRCEGRVEARGEIDF 182 (291)
T ss_dssp ------------------CSSCCEEEEECC----CBCCCSSEEEC---TTSCEEETTCCGGGCEEEEEEEEETTTTEEEE
T ss_pred ------------------cCCCCEEEEEECCccccccCCceEEEc---cCCCEEEEecchhhCEEEEEEEEECCCCeeEE
Confidence 889999999999887764 3334332 23479999999999999999999887543322
Q ss_pred --EEeece---ee------eeccccCCceEEEEEEEEccCCCCCceecccccc-----cceEEEEEecceeeEEEccCCC
Q psy7039 226 --AHVTGT---EF------TDNNVHEGKAYEYRVSAVNAAGTEKPKISLDALI-----GKRIKEFVTSTTASLNIKNSVR 289 (516)
Q Consensus 226 --~~~~~~---~~------~~~~l~~g~~~~~~~~~~~~~g~p~p~i~W~~~~-----~~~~~~~~~~~~~~l~i~~l~~ 289 (516)
..+... .+ ....+.+|..+.|.|.+ .|.|.|.+.|.+.. ... .........|.|.++..
T Consensus 183 ~~~~~~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~---~g~p~p~v~W~~~g~~~~~~~~--~~~~~~~~~L~i~~~~~ 257 (291)
T 2wim_A 183 RDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRA---SGSPEPAISWFRNGKLIEENEK--YILKGSNTELTVRNIIN 257 (291)
T ss_dssp EEEEEEEEBCCCCBCSCSEEECCSSSCCEEEEECBC---CCBSCCEEEEEETTEECCCTTT--EEECSTTCEEEEESCCS
T ss_pred eeEEEEeccCCccccCcccccceecCCCeEEEEEEe---ecCCCCeEEEEECCEECcCCcc--EEEcCCccEEEEeeCCc
Confidence 111111 11 12356789999999998 78899999996521 112 22234567899999999
Q ss_pred CCceEEEEEEEecCCCcceeEEEEEecCC
Q psy7039 290 KDSGIYKIEAKNDYGIDMADIEVVVVSKP 318 (516)
Q Consensus 290 ~d~g~y~c~a~n~~g~~~~~~~l~v~~~p 318 (516)
+|+|.|+|.|.|..|.....+.+.|..++
T Consensus 258 ~d~G~Y~C~a~N~~G~~~~~~~l~v~~~~ 286 (291)
T 2wim_A 258 SDGGPYVCRATNKAGEDEKQAFLQVFVQH 286 (291)
T ss_dssp TTCEEEEEEEEETTEEEEEEEEEEC----
T ss_pred ccCEEEEEEEEECCCceeeeEEEEEEEec
Confidence 99999999999999999999988887654
|
| >2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A | Back alignment and structure |
|---|
Probab=99.83 E-value=1.5e-19 Score=161.69 Aligned_cols=188 Identities=23% Similarity=0.406 Sum_probs=137.5
Q ss_pred CCccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCC--ceEEe
Q psy7039 113 APRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGG--RADVQ 190 (516)
Q Consensus 113 ~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~--~~~~~ 190 (516)
+|.+. ..+..+.+.+|+.+.|.|.+. +.|.+.+.|++++..+.... ++.+.
T Consensus 5 ~P~~~-~~~~~~~v~~G~~v~l~C~~~--------------------------~~p~~~v~W~~~~~~~~~~~~~~~~~~ 57 (194)
T 2a38_A 5 APTFT-QPLQSVVVLEGSTATFEAHIS--------------------------GFPVPEVSWFRDGQVISTSTLPGVQIS 57 (194)
T ss_dssp EEEEE-ECCCCEEEETTSCEEEEEEEE--------------------------EESCCEEEEEESSSBCCTTTSTTCEEE
T ss_pred CCeEE-ccCCceEEECCCEEEEEEEEE--------------------------ecCCCEEEEEECCEEcccccCCceEEE
Confidence 55555 566778999999999999999 88999999999988776442 44444
Q ss_pred ecCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEEeeceeeeeccccCCceEEEEEEEEccCCCCCceecccccccce
Q psy7039 191 TTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVTGTEFTDNNVHEGKAYEYRVSAVNAAGTEKPKISLDALIGKR 270 (516)
Q Consensus 191 ~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~g~p~p~i~W~~~~~~~ 270 (516)
..+....|.|.+++.+|+|.|+|.+.|..|.
T Consensus 58 ~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~------------------------------------------------- 88 (194)
T 2a38_A 58 FSDGRAKLTIPAVTKANSGRYSLKATNGSGQ------------------------------------------------- 88 (194)
T ss_dssp EETTEEEEEESSCCGGGCEEEEEEEEETTEE-------------------------------------------------
T ss_pred eCCCEEEEEECCCCcccCEEEEEEEEcCCce-------------------------------------------------
Confidence 4455556666666666666666666554332
Q ss_pred EEEEEecceeeEEEccCCCCCceEEEEEEEecCCCcceeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCce
Q psy7039 271 IKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPI 350 (516)
Q Consensus 271 ~~~~~~~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i 350 (516)
......+.|...+.+|.. .
T Consensus 89 -----------------------------------~~~~~~l~v~~~~~~p~~----~---------------------- 107 (194)
T 2a38_A 89 -----------------------------------ATSTAELLVKAETAPPNF----V---------------------- 107 (194)
T ss_dssp -----------------------------------EEEEEEEEEECCCEEEEE----E----------------------
T ss_pred -----------------------------------EeEEEEEEEccCCCCCEE----E----------------------
Confidence 222222222211111100 0
Q ss_pred eeccccccccccccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEE
Q psy7039 351 TGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQ 430 (516)
Q Consensus 351 ~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~ 430 (516)
..+....+..|+.+.|.|.+.|.|.+.+.|++++..+....++.+...+....|.|.++.. .|.|.|+|.
T Consensus 108 ---------~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~-~d~G~Y~C~ 177 (194)
T 2a38_A 108 ---------QRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYP-EDSGTYSVN 177 (194)
T ss_dssp ---------ECCCCEEECTTEEEEEEEEEEEESCCEEEEEETTEECCCSSSEEEEEETTEEEEEEEEECG-GGCEEEEEE
T ss_pred ---------eCCccEEEcCCCEEEEEEEEEEecCCeEEEEECCEECCCCCcEEEEEcCCEEEEEECCCCh-hcCeEEEEE
Confidence 0112356788999999999999999999999999999888888887777777899999999 999999999
Q ss_pred EEcCCCceeEEEEEEEe
Q psy7039 431 LVNTVGSDSASCKVYVV 447 (516)
Q Consensus 431 a~n~~G~~s~s~~l~v~ 447 (516)
|.|..|....++.|.|.
T Consensus 178 a~n~~g~~~~~~~l~V~ 194 (194)
T 2a38_A 178 ATNSVGRATSTAELLVQ 194 (194)
T ss_dssp EEETTEEEEEEEEEEEC
T ss_pred EEeCCCceEEEEEEEEC
Confidence 99999998888888773
|
| >2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=6.7e-19 Score=169.95 Aligned_cols=214 Identities=16% Similarity=0.166 Sum_probs=156.1
Q ss_pred cCCcEEEeCCCcCCCeEEEEEEEecCCCCCCCCCCCcceEeccCC---------CCCccccCcccceEEecCCeEEEEEe
Q psy7039 67 AGETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKN---------LAPRIDRSTLNDVKIKAGQSFSFDVK 137 (516)
Q Consensus 67 ~~~~~~~i~~l~~~~~y~~~~~a~n~~g~~~~s~~~~~~~~~~~~---------~~p~~~~~~~~~~~v~~g~~~~l~C~ 137 (516)
+....|.|.+++..|.|.|+|.|.|..|... ...+.+.... .+|.+.........+.+|+.+.|.|.
T Consensus 55 ~~~~~L~I~~~~~~D~G~Y~C~~~n~~g~~~----s~~l~v~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~G~~v~l~C~ 130 (312)
T 2y23_A 55 GNKTKMTFKDLGMDDLGIYSCDVTDTDGIAS----SYLIDEEELKRLLALSHEHKFPTVPVKSELAVEILEKGQVRFWMQ 130 (312)
T ss_dssp TTEEEEEESSCCGGGCEEEEEEESSSCCCCE----EEEECHHHHHHHHHHHHHHHSCBCCEEEEEEEEECSSSCEEEEEE
T ss_pred CCEEEEEECcCCccCCEEEEEEEEeCCCcEE----EEEEEEeeeeeeecccccCCCCccccccCCceEEeeCCCEEEEEE
Confidence 3457999999999999999999999877432 1222221100 04444423334788999999999999
Q ss_pred eeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEeec--CCeeEEEeccCCCCCCeeEEEEE
Q psy7039 138 EFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTT--KSETVLDIPFCSRSDTGHYSLTL 215 (516)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~g~Y~c~~ 215 (516)
+.+ +.|.+.+.|++++..+....++.+... .....|.|.+++.+|+|.|+|.+
T Consensus 131 ~~~-------------------------~~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~ 185 (312)
T 2y23_A 131 AEK-------------------------LSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQL 185 (312)
T ss_dssp ESC-------------------------CCSSCEEEEEETTEEECSSSSCEEEEETTTTEEEEEESCCCGGGCEEEEEEE
T ss_pred EEe-------------------------CCCCCEEEEEECCEECeeCCcEEEEEccCCCEEEEEEccCCcccCEeEEEEE
Confidence 872 578999999999999988877776643 55677999999999999999999
Q ss_pred EcCCCceEEEEEeec----------------------eee---eeccccCCceEEEEEEEEccCCCCCc-eecccccc--
Q psy7039 216 ENNLGTATASAHVTG----------------------TEF---TDNNVHEGKAYEYRVSAVNAAGTEKP-KISLDALI-- 267 (516)
Q Consensus 216 ~~~~g~~~~~~~~~~----------------------~~~---~~~~l~~g~~~~~~~~~~~~~g~p~p-~i~W~~~~-- 267 (516)
.+..+.......+.. ..+ ....+.+|..+.+.|.+ .|.|.| .+.|.+..
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~v~~G~~~~l~C~~---~~~p~~~~v~W~~~g~~ 262 (312)
T 2y23_A 186 QDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEVTGECNVLLKCKV---ANIKKETHIVWYKDERE 262 (312)
T ss_dssp ESSSCEEEEEEEECTHHHHHHHHHHHHHHHHHHHHHSSEEEEEEEEEEETTTEEEEEEEE---ESCCSSCEEEEEETTEE
T ss_pred EeCCceEEEEEEEcchhhhhhcccccccccchhhccCCceeecceEEEeCCCEEEEEEEE---cCCCCCCEEEEeeCCEE
Confidence 875555444333210 111 12356789999999998 788887 99996521
Q ss_pred ---cceEEEEEecceeeEEEccCCCCCceEEEEEEEecCCCcceeEEEEE
Q psy7039 268 ---GKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVV 314 (516)
Q Consensus 268 ---~~~~~~~~~~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~~~~l~v 314 (516)
..+.. .......|.|.++..+|+|.|+|.|.|..|....++.|.+
T Consensus 263 ~~~~~~~~--~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~i 310 (312)
T 2y23_A 263 ISVDEKHD--FKDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVD 310 (312)
T ss_dssp EEEECCC------CEEEEEECSCSGGGCEEEEEEEESTTCCEEEEEEECS
T ss_pred CCCCCcEE--EECCEEEEEECcCCHHHCEEEEEEEEcCCCceeeeeEEEe
Confidence 11111 1244579999999999999999999999999888877765
|
| >2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.7e-19 Score=173.73 Aligned_cols=216 Identities=16% Similarity=0.161 Sum_probs=148.6
Q ss_pred CcEEEeCCCcC-CCeEEEEEEEecCCCCCCCCCCCcceEeccC----CCCCccccCcccceEEecCCeEEEEEeeeeccc
Q psy7039 69 ETSCTVPGLIE-GETYQFQVRAVNAAGPGEASKPTAPIVAKPK----NLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELS 143 (516)
Q Consensus 69 ~~~~~i~~l~~-~~~y~~~~~a~n~~g~~~~s~~~~~~~~~~~----~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~ 143 (516)
...|.|.+++. .|.|.|+|.|.|..|... ....+.+... ...|.+. ..+....+.+|+.+.|.|.+.
T Consensus 62 ~~~L~i~~~~~~~D~G~Y~C~a~n~~g~~~---~~~~l~V~~~~~~p~~~p~i~-~~~~~~~v~~g~~v~l~C~~~---- 133 (304)
T 2yd9_A 62 GAVLRIQPLRTPRDENVYECVAQNSVGEIT---VHAKLTVLREDQLPSGFPNID-MGPQLKVVERTRTATMLCAAS---- 133 (304)
T ss_dssp EEEEEECSCCTTTTCSEEEEEEECSSCEEC---CEEEEEEECGGGCCTTCCEEE-ECCCCEEEETTSCEEECCEEE----
T ss_pred ceEEEEecccccCCCeEEEEEEECCCCeEE---EEEEEEEeccccCCCCCCeee-cCCccEEEeCCCeEEEEEECc----
Confidence 36899999997 999999999999887632 2222332211 1225555 455677899999999999999
Q ss_pred cccCccccccccccCccceeecCcCceeeEEeeCCeeeccCC-ceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCce
Q psy7039 144 YTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGG-RADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTA 222 (516)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~-~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~ 222 (516)
+.|.+.+.|++++..+.... ...+. ......|.|.+++.+|+|.|+|.+.|..|..
T Consensus 134 ----------------------g~p~~~v~W~k~~~~~~~~~~~~~~~-~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~ 190 (304)
T 2yd9_A 134 ----------------------GNPDPEITWFKDFLPVDPSASNGRIK-QLRSGALQIESSEETDQGKYECVATNSAGVR 190 (304)
T ss_dssp ----------------------CSSCCEEEEEETTEECCGGGGTTSEE-ECTTSCEEECSCCGGGCEEEEEEEEETTEEE
T ss_pred ----------------------cCCCCeEEEEECCEECcCCCCcceEE-eCCCeEEEEccCCcccCEEEEEEEEeCCCCE
Confidence 99999999999998886532 11221 1223489999999999999999999988865
Q ss_pred E---EEEEeec----eee----eeccccCCceEEEEEEEEccCCCCCceecccccccceE-EEEEecceeeEEEccCCCC
Q psy7039 223 T---ASAHVTG----TEF----TDNNVHEGKAYEYRVSAVNAAGTEKPKISLDALIGKRI-KEFVTSTTASLNIKNSVRK 290 (516)
Q Consensus 223 ~---~~~~~~~----~~~----~~~~l~~g~~~~~~~~~~~~~g~p~p~i~W~~~~~~~~-~~~~~~~~~~l~i~~l~~~ 290 (516)
. ..+.+.. ..+ ....+.+|..+.|.|.+ .|.|.|.+.|.+....-. ..........|.|.++ .
T Consensus 191 ~~~~~~l~v~~~~~~P~~~~~~~~~~v~~G~~v~l~C~~---~g~p~p~v~W~~~~~~l~~~~~~~~~~~~L~i~~~--~ 265 (304)
T 2yd9_A 191 YSSPANLYVRVQNVAPRFSILPMSHEIMPGGNVNITCVA---VGSPMPYVKWMQGAEDLTPEDDMPVGRNVLELTDV--K 265 (304)
T ss_dssp ECCCEEEEEECCCEEEEEEECCCCBCCCTTCCEEEEEEE---EEESCCEEEEEETTEECSCSSSCCBSEEEEEECSC--C
T ss_pred EeccEEEEEEeeccCCcEEecCCceEEcCCCeEEEEEEE---eeeCCCEEEEEECCEECCCcccccCCcEEEEEccc--c
Confidence 4 2333321 111 12357789999999998 788999999965211000 0001123345667666 5
Q ss_pred CceEEEEEEEecCCCcceeEEEEEecCCCC
Q psy7039 291 DSGIYKIEAKNDYGIDMADIEVVVVSKPGP 320 (516)
Q Consensus 291 d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~ 320 (516)
|+|.|+|.|.|..|.....+.|.|...+..
T Consensus 266 d~G~Y~C~a~N~~G~~~~~~~l~V~~~~~~ 295 (304)
T 2yd9_A 266 DSANYTCVAMSSLGVIEAVAQITVKSLPKA 295 (304)
T ss_dssp SCEEEEEEEEETTEEEEEEEEEC-------
T ss_pred cCEEEEEEEEeCCCcEEEEEEEEEecCccc
Confidence 899999999999999988888888776654
|
| >3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane, disulfide bond, glycoprotein, immunoglobulin domain, membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.5e-19 Score=190.84 Aligned_cols=413 Identities=13% Similarity=0.106 Sum_probs=224.4
Q ss_pred CCCCCCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCCCeEEeEEeecCCcEEEeC-CCcCCCeEEEEEEE
Q psy7039 11 FDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVVVPAGETSCTVP-GLIEGETYQFQVRA 89 (516)
Q Consensus 11 ~~~p~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~i~-~l~~~~~y~~~~~a 89 (516)
..+|++|.+|.|......++.|+|.++. +. ..+.+|.|+++..++.+..+........++.|. +|.+...|.|+|.|
T Consensus 100 ~~pP~~P~nl~c~~~~~~~~~~~W~~~~-~~-~~~~~y~l~~~~~~~~~~~c~~~~~~~~~c~~~~~l~~~~~Y~~~v~a 177 (589)
T 3l5h_A 100 GLPPEKPKNLSCIVNEGKKMRCEWDGGR-ET-HLETNFTLKSEWATHKFADCKAKRDTPTSCTVDYSTVYFVNIEVWVEA 177 (589)
T ss_dssp -CCCCCCEEEEEEEETTSCEEEEEECCS-CC-SSCEEEEECCBCSSSBCCCEECBTTBSSCCBCCSCCCSSSCEEECEEE
T ss_pred cCCCCCCEeeEEEECCCceEEEEECCCC-cC-CcCceEEEEEEEcCCCcccCCCCCCCcEEEEECCCCchheeEEEEEEE
Confidence 4689999999999988899999999974 33 458899999876555454454444445677777 79999999999999
Q ss_pred ecCCCCCCCCCCCcceEeccCCCCCccccCcccceEEe--cCCeEEEEEeeeeccccccCccccccccccCccceeecCc
Q psy7039 90 VNAAGPGEASKPTAPIVAKPKNLAPRIDRSTLNDVKIK--AGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSE 167 (516)
Q Consensus 90 ~n~~g~~~~s~~~~~~~~~~~~~~p~~~~~~~~~~~v~--~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (516)
.|..|.+.+............+.+| ..+.+. ....-.+...|. +|....+.... |
T Consensus 178 ~n~~G~~~s~~~~~~~~~~~~p~pP-------~~~~~~~~~~~~~~v~l~W~-------~p~~~~~~~~~----Y----- 234 (589)
T 3l5h_A 178 ENALGKVTSDHINFDPVYKVKPNPP-------HNLSVINSEELSSILKLTWT-------NPSIKSVIILK----Y----- 234 (589)
T ss_dssp EESSCCBCCCCEEECGGGSEECCCC-------CSCEEECTTTCTTCEEEECC-------CCGGGGTSCEE----E-----
T ss_pred EeCCCCcccccEEEccccEEEcCCC-------ceEEEEecCCCCCeEEEEeC-------CCCCCCeeeEE----E-----
Confidence 9999876432211111111122233 333331 122222333333 11111111111 1
Q ss_pred CceeeEEeeCCeeeccCCceEE-eecCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEEeeceeee-eccccCCceEE
Q psy7039 168 PFLNHGWSINGQVCQIGGRADV-QTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVTGTEFT-DNNVHEGKAYE 245 (516)
Q Consensus 168 p~~~i~W~~~~~~~~~~~~~~~-~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~~~~~~~-~~~l~~g~~~~ 245 (516)
.+.|...+..-- ..... ........+.|.++.+...+.+++.+.+..|....+.......+. ......+..-.
T Consensus 235 ---~v~~~~~~~~~w--~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~~~~g~g~~S~~S~~~~~~T~~~~P~~~p~~ 309 (589)
T 3l5h_A 235 ---NIQYRTKDASTW--SQIPPEDTASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASGITYEDRPSKAPSF 309 (589)
T ss_dssp ---EEEEEETTCSCC--BCCCTTSSCSCCSEEEECSCCSSCCEEEEEEEEESSSCSCCCCCCCCBCCCCCCCCCCSCCCE
T ss_pred ---EEEECCCCCCCc--EEEccccCcCceeEEEECCCCCCCEEEEEEEEEeCCCCCccCCCCCccccccCccCCCCCCcE
Confidence 222222110000 00000 001234578889999999999999998877643221100000000 00111011111
Q ss_pred EEEE-EEccCCCCCceeccccc-------ccceEEEEE----------ecceeeEEEccCCCCCceEEEEEEEecCCCcc
Q psy7039 246 YRVS-AVNAAGTEKPKISLDAL-------IGKRIKEFV----------TSTTASLNIKNSVRKDSGIYKIEAKNDYGIDM 307 (516)
Q Consensus 246 ~~~~-~~~~~g~p~p~i~W~~~-------~~~~~~~~~----------~~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~ 307 (516)
++.. +....+.....+.|... ....+.+.. ......+.+ +.+...|.+++.|.|..|...
T Consensus 310 ~~~v~~~~~~~~~~v~l~W~p~~~~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~--l~~~~~Y~~~V~A~n~~G~~~ 387 (589)
T 3l5h_A 310 WYKIDPSHTQGYRTVQLVWKTLPPFEANGKILDYEVTLTRWKSHLQNYTVNATKLTV--NLTNDRYLATLTVRNLVGKSD 387 (589)
T ss_dssp EEECCSCSSTTSCCEEEEECCCCTTTSSSCCCEEEEEECCTTSCCCBCCCSSSCCEE--CCCSSCCCEEEEEEBTTBCCC
T ss_pred EEEeecCcCCCcceEEEEEeeCCchhccCceeeEEEEEecCCCCceeeccCCceEEE--EeCCCCEEEEEEEEeCCccCC
Confidence 1111 10112333445556420 011222222 111223333 668899999999999988765
Q ss_pred eeEEEEEecCC---CCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeeecC
Q psy7039 308 ADIEVVVVSKP---GPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPK 384 (516)
Q Consensus 308 ~~~~l~v~~~p---~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~ 384 (516)
.+. +.+...+ ..|...+.+... .+++.|+|.+|.. .+.+|.
T Consensus 388 ~s~-~~~~~~~~~~~~p~~~l~~~~~-~~si~l~W~~p~~----~i~~Y~------------------------------ 431 (589)
T 3l5h_A 388 AAV-LTIPACDFQATHPVMDLKAFPK-DNMLWVEWTTPRE----SVKKYI------------------------------ 431 (589)
T ss_dssp CCC-CCCCCTTCCCCSCCCSCEEEEC-SSSEEEECCCCSS----CCSCBC------------------------------
T ss_pred CeE-EEeecccccCCCCcceEEEEEC-CCeEEEEEECCCC----CccEEE------------------------------
Confidence 542 2222221 222222555544 6899999998864 455552
Q ss_pred CceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEEEEec---CCCCCCCCccccc
Q psy7039 385 PTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVD---KPSPPQGPLDVSD 461 (516)
Q Consensus 385 ~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~v~~---~p~~P~~~l~~~~ 461 (516)
|.|...+...................+.+.+|.+ ...|.|++.|.|..|.+..+. +.+.. .|.+| ..+.+..
T Consensus 432 --v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p-~t~Y~~~V~A~~~~g~g~~~~-~~~~t~~~~P~~p-p~l~~~~ 506 (589)
T 3l5h_A 432 --LEWCVLSDKAPCITDWQQEDGTVHRTYLRGNLAE-SKCYLITVTPVYADGPGSPES-IKAYLKQAPPSKG-PTVRTKK 506 (589)
T ss_dssp --CEEEEECSSSCCCEEECCBCSSCCEEECCSCCCS-SSEEEEEECBEETTEECCCEE-EEEESSCCCCSSC-CCCCEEC
T ss_pred --EEEEECCCCCCCccCcEEeeCCcceEEehhcccc-CcEEEEEEEEEeCCcccCCEE-EEEEeccCCCCCC-CeEEEee
Confidence 2333222110000000000112234567789999 999999999999988765432 33333 35444 4688888
Q ss_pred ccCCeEEEEeeCC-CCCCCCCcceEEEEEEecCCCc
Q psy7039 462 ITPESCSLSWKPP-LDDGGSPITNYVVEKYESATGV 496 (516)
Q Consensus 462 ~~~~~~~l~W~~p-~~~~~~~i~~Y~v~~~~~~~~~ 496 (516)
++.+++.|+|++| ..+.++.|.+|.|+|+..+...
T Consensus 507 ~~~~sv~l~W~~~~~~~~~g~i~~Y~v~~~~~~~~~ 542 (589)
T 3l5h_A 507 VGKNEAVLEWDQLPVDVQNGFIRNYTIFYRTIIGNE 542 (589)
T ss_dssp CCSSCBEEBCCCCCHHHHCSCEEEEEECCBCSSCCC
T ss_pred cccceEEEEecCCCHHHcCccceeEEEEEEeCCCCe
Confidence 8999999999984 3456678999999999876544
|
| >2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A | Back alignment and structure |
|---|
Probab=99.81 E-value=2.2e-18 Score=156.75 Aligned_cols=138 Identities=25% Similarity=0.315 Sum_probs=95.6
Q ss_pred eEEEccC-CCCCceEEEEEEEecCCCcceeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccc
Q psy7039 281 SLNIKNS-VRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSD 359 (516)
Q Consensus 281 ~l~i~~l-~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~ 359 (516)
.|.|.++ ...|+|.|+|.|.|..|.....+.|.|...+..+.....+.
T Consensus 64 ~L~i~~v~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~p~~~------------------------------- 112 (212)
T 2yd6_A 64 VLRIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIPRGFPTID------------------------------- 112 (212)
T ss_dssp EEEECSCCTTTTCEEEEEEEEETTEEEEEEEEEEEECGGGCCTTCCEEE-------------------------------
T ss_pred EEEEeccCCCCCCeEEEEEEEcCCCcEEEEEEEEEeccCccCCCcceee-------------------------------
Confidence 4566666 36666666666666666655566666665433221100000
Q ss_pred cccccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCC---CceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCC
Q psy7039 360 LSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPD---GRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVG 436 (516)
Q Consensus 360 ~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~---~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G 436 (516)
..+....+..|+.+.|.|.+.|.|.+.+.|++++..+... .++..........|.|.++.. .|.|.|+|.|.|..|
T Consensus 113 ~~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~-~d~G~Y~C~a~N~~G 191 (212)
T 2yd6_A 113 MGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEE-SDQGKYECVATNSAG 191 (212)
T ss_dssp ECCCCEEEETTSCEEEEEEEECSSCCEEEEEETTEEC------CCEEEEEETTEEEEEECSCCG-GGCEEEEEEEEETTE
T ss_pred cCCcceeEecCCCEEEEEEecCCCCCeEEEEECCccccCcCCCceEEEEecCCeEEEEEcCCCc-ccCEEEEEEEECCCC
Confidence 1223456789999999999999999999999999887543 455555556678999999999 999999999999999
Q ss_pred ce-eEEEEEEEecCC
Q psy7039 437 SD-SASCKVYVVDKP 450 (516)
Q Consensus 437 ~~-s~s~~l~v~~~p 450 (516)
.. +..+.|.|...+
T Consensus 192 ~~~s~~a~l~~~~~~ 206 (212)
T 2yd6_A 192 TRYSAPANLYVRGTK 206 (212)
T ss_dssp EEECCCEEEEEEC--
T ss_pred ccccccccEEEEecc
Confidence 85 455777776543
|
| >2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A | Back alignment and structure |
|---|
Probab=99.81 E-value=6.5e-18 Score=153.61 Aligned_cols=195 Identities=20% Similarity=0.285 Sum_probs=133.5
Q ss_pred CCCccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeec-cCCceEEe
Q psy7039 112 LAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQ-IGGRADVQ 190 (516)
Q Consensus 112 ~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~-~~~~~~~~ 190 (516)
.+|.|. ..+..+.+.+|+.+.|.|.+. +.|.+.+.|++++..+. ...++.+.
T Consensus 5 ~pP~~~-~~p~~~~v~~G~~v~l~C~~~--------------------------g~p~~~v~W~~~~~~~~~~~~~~~~~ 57 (212)
T 2yd1_A 5 HPPEII-RKPQNQGVRVGGVASFYCAAR--------------------------GDPPPSIVWRKNGKKVSGTQSRYTVL 57 (212)
T ss_dssp CCCEEE-ECCCCEEEETTSCEEEEEEEE--------------------------CSSCCEEEEEETTEECCTTSTTEEEE
T ss_pred CCCEEE-cCCCceEEecCCEEEEEEEEc--------------------------cCCCCeEEEEECCEECCCCcceeEEE
Confidence 567777 567778999999999999999 89999999999988765 23333322
Q ss_pred e-cCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEEeeceeeeeccccCCceEEEEEEEEccCCCCCceecccccccc
Q psy7039 191 T-TKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVTGTEFTDNNVHEGKAYEYRVSAVNAAGTEKPKISLDALIGK 269 (516)
Q Consensus 191 ~-~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~g~p~p~i~W~~~~~~ 269 (516)
. .+...
T Consensus 58 ~~~~~~~------------------------------------------------------------------------- 64 (212)
T 2yd1_A 58 EQPGGIS------------------------------------------------------------------------- 64 (212)
T ss_dssp EETTTEE-------------------------------------------------------------------------
T ss_pred EcCCCeE-------------------------------------------------------------------------
Confidence 1 12223
Q ss_pred eEEEEEecceeeEEEccCCC-CCceEEEEEEEecCCC-cceeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCC
Q psy7039 270 RIKEFVTSTTASLNIKNSVR-KDSGIYKIEAKNDYGI-DMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGG 347 (516)
Q Consensus 270 ~~~~~~~~~~~~l~i~~l~~-~d~g~y~c~a~n~~g~-~~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~ 347 (516)
.|.|.++.. .|+|.|+|.|.|..|. ....+.|.|...+..+..+..+.
T Consensus 65 -----------~L~i~~v~~~~d~G~Y~C~~~n~~g~~~~~~~~l~V~~~~~~~~~~p~~~------------------- 114 (212)
T 2yd1_A 65 -----------ILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVIT------------------- 114 (212)
T ss_dssp -----------EEEESSCCTTTTCSEEEEEEECSSSCEEEEEEEEEEECTTCSCTTCCEEE-------------------
T ss_pred -----------EEEEEecCCCCcCceEEEEEEeCCCCeEEeeEEEEEecccCCCCCCCeeE-------------------
Confidence 445555555 5555555555555554 34455666665543322111100
Q ss_pred CceeeccccccccccccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCC-CCceEEEEcCCeEEEEEcCceecCCceE
Q psy7039 348 TPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSP-DGRIKFETSENQTIYRNKSAKRATDSGS 426 (516)
Q Consensus 348 ~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~-~~~~~~~~~~~~~~l~i~~~~~~~~~g~ 426 (516)
..+....+..|+.+.|.|.+.|.|.+.+.|++++..+.. ..++... . ..|.|.++.. .|.|.
T Consensus 115 ------------~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~--~--~~L~i~~v~~-~d~G~ 177 (212)
T 2yd1_A 115 ------------QGPGTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLK--D--GFLQIENSRE-EDQGK 177 (212)
T ss_dssp ------------ECCCCEEEETTCCEEECCEEECSSCCEEEEEETTEECCTTSTTEEEE--T--TEEEECSCCG-GGCEE
T ss_pred ------------eCCCceEeecCCeEEEEEEeccCCCCeEEEEECCeEcccCCCeEEcc--C--CeEEEccCCh-hhCEE
Confidence 122346778999999999999999999999999988865 3444332 2 2799999999 99999
Q ss_pred EEEEEEcCCCceeEE-EEEEEecCCCCC
Q psy7039 427 YTIQLVNTVGSDSAS-CKVYVVDKPSPP 453 (516)
Q Consensus 427 y~c~a~n~~G~~s~s-~~l~v~~~p~~P 453 (516)
|+|.|.|..|..... +.|.|......+
T Consensus 178 Y~C~a~N~~G~~~s~~~~l~V~~~~~~~ 205 (212)
T 2yd1_A 178 YECVAENSMGTEHSKATNLYVKVRRVGT 205 (212)
T ss_dssp EEEEEEETTEEEECCCEEEEEEC---C-
T ss_pred EEEEeecCCCceeEEEEEEEEEeccccc
Confidence 999999999997654 899998766555
|
| >1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=6e-17 Score=167.64 Aligned_cols=304 Identities=11% Similarity=0.101 Sum_probs=177.0
Q ss_pred CCcEEEeCCCcCCCeEEEEEEEecCCC-----------CCCCCCCCcceEec-cCCCCCccccCcccceEEecCCeEEEE
Q psy7039 68 GETSCTVPGLIEGETYQFQVRAVNAAG-----------PGEASKPTAPIVAK-PKNLAPRIDRSTLNDVKIKAGQSFSFD 135 (516)
Q Consensus 68 ~~~~~~i~~l~~~~~y~~~~~a~n~~g-----------~~~~s~~~~~~~~~-~~~~~p~~~~~~~~~~~v~~g~~~~l~ 135 (516)
...+|+|.++++.|.+.|.|.+.+..+ ...... ...+.+. ....+|.+....+.......|+.+.|.
T Consensus 78 ~~~sL~I~~v~~~Dsg~Y~C~~~~~~~~~~~~~~~~~~~~~~~~-~~~L~V~~~~~~~P~i~~~~~~~~~~~~~~~v~L~ 156 (512)
T 1zvo_C 78 NQFSLNLRSMSAADTAMYYCARGNPPPYYDIGTGSDDGIDVWGQ-GTTVHVSSAPTKAPDVFPIISGCRHPKDNSPVVLA 156 (512)
T ss_pred CEEEEEECcCCHHHCEEEEEEEECCCCccccccccccccccccC-ceEEEecccCCcCCeEEeccCCcccccCCCeEEEE
Confidence 457899999999999999999987642 000111 1122222 222355543222211101246899999
Q ss_pred EeeeeccccccCccccccccccCccceeecCc-Cce-eeEEeeCCeeeccCCceEEee-cCC---eeEEEeccCCCCCCe
Q psy7039 136 VKEFRELSYTKSPLRALGVRANSTKGWVKLSE-PFL-NHGWSINGQVCQIGGRADVQT-TKS---ETVLDIPFCSRSDTG 209 (516)
Q Consensus 136 C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~-~i~W~~~~~~~~~~~~~~~~~-~~~---~~~l~i~~~~~~d~g 209 (516)
|.+. +. |.+ .+.|++++............. .+. .+.|.|.....+ .|
T Consensus 157 C~~~--------------------------g~~P~p~~v~W~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~-~g 209 (512)
T 1zvo_C 157 CLIT--------------------------GYHPTSVTVTWYMGTQSQPQRTFPEIQRRDSYYMTSSQLSTPLQQWR-QG 209 (512)
T ss_pred EEEE--------------------------eeecCceEEEEEcCcccCceEecCceecCCCCEEEEEEEEEcHHHcC-Cc
Confidence 9999 54 654 899999654321000000111 111 246889888877 89
Q ss_pred eEEEEEEcCCCceEEEE-------------Eee--c--------------------------------------------
Q psy7039 210 HYSLTLENNLGTATASA-------------HVT--G-------------------------------------------- 230 (516)
Q Consensus 210 ~Y~c~~~~~~g~~~~~~-------------~~~--~-------------------------------------------- 230 (516)
.|+|.+.|..+...... .+. .
T Consensus 210 ~ytC~v~n~~~~~~~~~~~~~~~~~~~~~v~l~~pp~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~h~~~~~~~~~ 289 (512)
T 1zvo_C 210 EYKCVVQHTASKSKKEIFRWPESPKAQASSVPTAQPQAEGSLAKATTAPATTRNTGRGGEEKKKEKEKEEQEERETKTPE 289 (512)
T ss_pred eEEEEEEeCCCCceEEEecCCCCCCcCCEEEEeCCCchhccccccccCchhhccCcccccceeccCCcccccccCccccc
Confidence 99999999887654433 110 0
Q ss_pred -------eee-----eeccccCCceEEEEEEEEccCCCCC--ceecccccccc---eEE--EEEe------cceeeEEEc
Q psy7039 231 -------TEF-----TDNNVHEGKAYEYRVSAVNAAGTEK--PKISLDALIGK---RIK--EFVT------STTASLNIK 285 (516)
Q Consensus 231 -------~~~-----~~~~l~~g~~~~~~~~~~~~~g~p~--p~i~W~~~~~~---~~~--~~~~------~~~~~l~i~ 285 (516)
... ....+..|+.+.|.|.+ .|..+ ..++|.+.... ... .... .....|.|.
T Consensus 290 ~~~~~~~p~v~~~~p~~~~~~~g~~~~L~C~v---~g~~P~~~~i~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~i~ 366 (512)
T 1zvo_C 290 CPSHTQPLGVYLLTPAVQDLWLRDKATFTCFV---VGSDLKDAHLTWEVAGKVPTGGVEEGLLERHSNGSQSQHSRLTLP 366 (512)
T ss_pred CCCCCCCCEEEEECCChHHhccCCceEEEEEE---eceECCCeEEEEEECCEeccCceeccceecCCCCeEEEEEEEEEc
Confidence 000 11224579999999998 55433 38999652211 100 0111 112468888
Q ss_pred cCCCCCceEEEEEEEecCCCcceeEEEEEec-C--CCCCCCCceeeeccCCeeEEEecCCCCCCCCceeecccccccccc
Q psy7039 286 NSVRKDSGIYKIEAKNDYGIDMADIEVVVVS-K--PGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSI 362 (516)
Q Consensus 286 ~l~~~d~g~y~c~a~n~~g~~~~~~~l~v~~-~--p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~ 362 (516)
.....|.|.|+|.|.|..+... ...+.... . +.+|. +.+. ..
T Consensus 367 ~~~~~d~g~y~C~a~n~~~~~~-~~~~~~~~~~~~~~~p~--v~~~--------------------------------~~ 411 (512)
T 1zvo_C 367 RSLWNAGTSVTCTLNHPSLPPQ-RLMALREPAAQAPVKLS--LNLL--------------------------------AS 411 (512)
T ss_pred hHHhcCCCeEEEEEEeCCCCCC-ceeEEeecCCCCCCCCE--EEEE--------------------------------cc
Confidence 8889999999999999877654 32332211 1 11110 0000 00
Q ss_pred ccEEEEcCCeEE-EEEEEeeecCC--ceEEEECCeecCCCCce--EEEEc-CC-----eEEEEEcCceecCCceEEEEEE
Q psy7039 363 RDMTVLAGEEFT-ITVPFSGRPKP--TPIWTVNGDEVSPDGRI--KFETS-EN-----QTIYRNKSAKRATDSGSYTIQL 431 (516)
Q Consensus 363 ~~~~v~~g~~~~-l~C~~~g~p~~--~i~W~~~~~~l~~~~~~--~~~~~-~~-----~~~l~i~~~~~~~~~g~y~c~a 431 (516)
.. .|+.+. |.|.+.|.+++ .+.|.++|..+...... ..... ++ .+.|.|..... ++.|.|+|.|
T Consensus 412 ~~----~~~~~~~L~C~~~g~~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~dg~~~~~~s~L~v~~~~~-~~~g~YtC~v 486 (512)
T 1zvo_C 412 SD----PPEAASWLLCEVSGFSPPNILLMWLEDQREVNTSGFAPARPPPQPGSTTFWAWSVLRVPAPPS-PQPATYTCVV 486 (512)
T ss_pred Cc----CCCCceEEEEEEeeeCCCCcEEEEEECCeECcCccccccceeECCCCCEEEEEEEEEECchhc-CCCCeEEEEE
Confidence 11 688889 99999986554 68999999887543211 11111 12 13566766666 7799999999
Q ss_pred EcCCCceeEEE
Q psy7039 432 VNTVGSDSASC 442 (516)
Q Consensus 432 ~n~~G~~s~s~ 442 (516)
.|.........
T Consensus 487 ~h~~l~~~~~~ 497 (512)
T 1zvo_C 487 SHEDSRTLLNA 497 (512)
T ss_pred EecCCCCceEE
Confidence 99876644333
|
| >1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 | Back alignment and structure |
|---|
Probab=99.80 E-value=2.3e-18 Score=175.24 Aligned_cols=274 Identities=11% Similarity=0.076 Sum_probs=164.2
Q ss_pred cccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcC--ceeeEEeeC--Ceeec-------------
Q psy7039 120 TLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEP--FLNHGWSIN--GQVCQ------------- 182 (516)
Q Consensus 120 ~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p--~~~i~W~~~--~~~~~------------- 182 (516)
.+..+.+.+|+.+.|.|.+. +.+ .+.+.|+++ +..+.
T Consensus 6 ~p~~~~v~~G~~v~L~C~~~--------------------------~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~ 59 (444)
T 1igt_B 6 ESGGGLVQPGGSLKLSCATS--------------------------GFTFSDYYMYWVRQTPEKRLEWVAYISNGGGSTY 59 (444)
T ss_dssp EECCCEECTTCCEEEEEEEE--------------------------SSCGGGSCEEEEEECTTCCEEEEEEECTTSSCEE
T ss_pred cCCCeEEcCCCCEEEEEEcC--------------------------CCccCCceEEEEEeCCCCCcEEEEEEecCCCcee
Confidence 34557899999999999998 543 456777763 22110
Q ss_pred ----cCCceEEeec--CCeeEEEeccCCCCCCeeEEEEEEcCCCce-----EEEEEeec-----ee-ee---eccccCCc
Q psy7039 183 ----IGGRADVQTT--KSETVLDIPFCSRSDTGHYSLTLENNLGTA-----TASAHVTG-----TE-FT---DNNVHEGK 242 (516)
Q Consensus 183 ----~~~~~~~~~~--~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~-----~~~~~~~~-----~~-~~---~~~l~~g~ 242 (516)
...|+.+... ....+|.|.+++.+|+|.|.|.+.+..+.. ...+.+.. .. +. ...+.+|.
T Consensus 60 ~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~ 139 (444)
T 1igt_B 60 YPDTVKGRFTISRDNAKNTLYLQMSRLKSEDTAMYYCARHGGYYAMDYWGQGTTVTVSSAKTTAPSVYPLAPVCGDTTGS 139 (444)
T ss_dssp CCGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEECSSSCEEEEBCCEEEEECSCCCBCCEEEEECCCSSCCCSS
T ss_pred cCcccCCceEEEEeCCCCeEEEEECCCCHHHCEEEEEEEecCCcccccccCcEEEEecCCCCCCCceeEecccccCCCCC
Confidence 1246665432 356799999999999999999999875431 11222221 11 11 12246899
Q ss_pred eEEEEEEEEccCC-CCCc-eecccccccce--E---EEEE---ecceeeEEEccCCCCCceEEEEEEEecCCCcceeEEE
Q psy7039 243 AYEYRVSAVNAAG-TEKP-KISLDALIGKR--I---KEFV---TSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEV 312 (516)
Q Consensus 243 ~~~~~~~~~~~~g-~p~p-~i~W~~~~~~~--~---~~~~---~~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~~~~l 312 (516)
.+.+.|.+ .| .|.| .+.|.+..... . .... ......|.|.++..+| |.|+|.|.|..|.......+
T Consensus 140 ~v~L~C~~---~g~~P~p~~v~W~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-g~Y~C~a~n~~~~~~~~~~i 215 (444)
T 1igt_B 140 SVTLGCLV---KGYFPEPVTLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-QSITCNVAHPASSTKVDKKI 215 (444)
T ss_dssp CEEEEEEE---EEEBSSCCEEEEGGGTBCTTEEECCCEEETTEEEEEEEEEECSTTTTT-SCCEEEEEETTTTEEEEEEC
T ss_pred cEEEEEEE---cceeCCCcEEEEecCCCCCCeEecCccccCCcEEEEEEEEEchhhcCC-CeEEEEEEeCCCCcceEEEe
Confidence 99999998 45 3666 99997632210 0 0000 0112468899999889 99999999998875433333
Q ss_pred EEecCCCCCCCCcee-eeccCCeeEEEecCCCCCCCCceeeccccccccccccEE-EEcCCeEEEEEEEeeec----CCc
Q psy7039 313 VVVSKPGPPTGPIDY-TTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMT-VLAGEEFTITVPFSGRP----KPT 386 (516)
Q Consensus 313 ~v~~~p~~p~~p~~~-~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~-v~~g~~~~l~C~~~g~p----~~~ 386 (516)
.+.........+... .........+...+| .... +..|+.+.|.|.+.|.+ .+.
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~p~v~~~~p--------------------~~~~~~~~G~~~~L~C~~~g~~~~p~~~~ 275 (444)
T 1igt_B 216 EPRGPTIKPCPPCKCPAPNLLGGPSVFIFPP--------------------KIKDVLMISLSPIVTCVVVDVSEDDPDVQ 275 (444)
T ss_dssp CCCCCSCCCCCCCSCCCSCCCCCCEEEEECC--------------------CHHHHHCTTSCCEEEEEEEEECTTCCCCE
T ss_pred ccCCCCcccCCccccCCcccCCCceEEecCC--------------------chhheeecCCCcEEEEEEeecccCCCCeE
Confidence 221000000000000 000000001111111 1111 46899999999999984 358
Q ss_pred eEEEECCeecCCCCce--EEEEcC---CeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEE
Q psy7039 387 PIWTVNGDEVSPDGRI--KFETSE---NQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKV 444 (516)
Q Consensus 387 i~W~~~~~~l~~~~~~--~~~~~~---~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l 444 (516)
+.|++++..+...... .....+ ....|.|.++.. .|.|.|+|.|.|..|.......+
T Consensus 276 v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~-~d~G~Y~C~a~n~~~~~~~~~~v 337 (444)
T 1igt_B 276 ISWFVNNVEVHTAQTQTHREDYNSTLRVVSALPIQHQDW-MSGKEFKCKVNNKDLPAPIERTI 337 (444)
T ss_dssp EEEEETTEECSSTTCBCCEEECSSSEEEEEEEECCHHHH-HTTCEEEEEEECTTCSSCEEEEE
T ss_pred EEEEECCccccCcccccceeCCCCcEEEEEEEEEcHHHh-ccCCcEEEEEEcCCCCCceEEEE
Confidence 9999999876433211 111111 235799999999 99999999999999876444443
|
| >3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A | Back alignment and structure |
|---|
Probab=99.80 E-value=5.2e-18 Score=176.68 Aligned_cols=95 Identities=33% Similarity=0.591 Sum_probs=87.4
Q ss_pred CCCCCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCC-CeEEeEEeecCCcEEEeCCCcCCCeEEEEEEEe
Q psy7039 12 DEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTG-NWEKAVVVPAGETSCTVPGLIEGETYQFQVRAV 90 (516)
Q Consensus 12 ~~p~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~-~~~~~~~~~~~~~~~~i~~l~~~~~y~~~~~a~ 90 (516)
.+|+||..+.+++++.++|.|+|.+|..|||++|++|.|++++.++ .|..+... ..+.+++.+|.++..|.|||+|.
T Consensus 8 ~~P~pP~~P~v~~~~~~sv~L~W~~P~~DGgs~I~~Y~vE~~~~~~~~W~~v~~~--~~t~~~V~~L~~g~~Y~FRV~A~ 85 (573)
T 3uto_A 8 PEPEPPRFPIIENILDEAVILSWKPPALDGGSLVTNYTIEKREAMGGSWSPCAKS--RYTYTTIEGLRAGKQYEFRIIAE 85 (573)
T ss_dssp CCCCCCEEEEEEEECSSCEEEEEECCSCCSSSCCCEEEEEEEESSSCCCEEEEEE--SSSEEEECCCCTTCEEEEEEEEE
T ss_pred CCCccCCCCEEEEeeCCEEEEEECCCCcCCCCcccEEEEEEEECCCCceEEeccc--cCCEEEeCCCCCCCcEeEEEEEE
Confidence 4799999999999999999999999999999999999999999877 99998765 67899999999999999999999
Q ss_pred cCCCCCCCCCCCcceEec
Q psy7039 91 NAAGPGEASKPTAPIVAK 108 (516)
Q Consensus 91 n~~g~~~~s~~~~~~~~~ 108 (516)
|..|.+.++..+..+...
T Consensus 86 N~~G~s~PS~~s~~v~~~ 103 (573)
T 3uto_A 86 NKHGQSKPCEPTAPVLIP 103 (573)
T ss_dssp ETTEECCCCCCCCCEECC
T ss_pred cCceEcCCcCCCCCEEcC
Confidence 999999999888777654
|
| >4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.3e-19 Score=174.96 Aligned_cols=219 Identities=10% Similarity=0.052 Sum_probs=146.5
Q ss_pred CCcEEEeCCCcCCCeEEEEEEEecCCCCCCCCCCCcceEeccCCCCCccc-cCcccceEEecCCeEEEEEeeeecccccc
Q psy7039 68 GETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAPRID-RSTLNDVKIKAGQSFSFDVKEFRELSYTK 146 (516)
Q Consensus 68 ~~~~~~i~~l~~~~~y~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~p~~~-~~~~~~~~v~~g~~~~l~C~~~~~~~~~~ 146 (516)
...+|.|.+++..|.|.|+|+|.|..+.... ....+.... .|.+. ...+..+....|+.+.|.|...+
T Consensus 72 ~~~sL~I~~v~~~D~G~Y~C~a~n~~~~~~~--~~~~~~v~~---~~~~~~~~~~~~~~~~~~~~~~l~C~~~~------ 140 (308)
T 4fom_A 72 NDATITLHNIGFSDSGKYICKAVTFPLGNAQ--SSTTVTVLV---EPTVSLIKGPDSLIDGGNETVAAICIAAT------ 140 (308)
T ss_dssp SBCCEEECSCCGGGCEEEEEEEEETTTEEEE--EEEEEEEEB---CCEEEEEECSSCCCTTCSCEEEEEEEEEE------
T ss_pred CceEEEEccCCHHHCEEEEEEEeeCCCccee--eeeEEEeee---ccccccccccceeEEcCCceEEEEEEecC------
Confidence 3467999999999999999999885432211 112222221 12211 13344455667899999997642
Q ss_pred CccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEe-ecCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEE
Q psy7039 147 SPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQ-TTKSETVLDIPFCSRSDTGHYSLTLENNLGTATAS 225 (516)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~-~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~ 225 (516)
+.|.+.+.|++++..+......... .....+.|.|.++..+|.|.|+|.+.|..+.....
T Consensus 141 -------------------g~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~ 201 (308)
T 4fom_A 141 -------------------GKPVAHIDWEGDLGEMESTTTSFPNETATIISQYKLFPTRFARGRRITCVVKHPALEKDIR 201 (308)
T ss_dssp -------------------EBSCCEEEECCCSSBCCEEEEECTTSCEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEE
T ss_pred -------------------CcCCceEEEEECCcccccccceeeeecccccccceEEeeeecCCccEEEEEEccCCCCceE
Confidence 7899999999998776532111000 01123579999999999999999999987665433
Q ss_pred --EEeecee---e-----eeccccCCceEEEEEEEEccCCCCCc-eecccccccceEEEEEecceeeEEEccCCCCCceE
Q psy7039 226 --AHVTGTE---F-----TDNNVHEGKAYEYRVSAVNAAGTEKP-KISLDALIGKRIKEFVTSTTASLNIKNSVRKDSGI 294 (516)
Q Consensus 226 --~~~~~~~---~-----~~~~l~~g~~~~~~~~~~~~~g~p~p-~i~W~~~~~~~~~~~~~~~~~~l~i~~l~~~d~g~ 294 (516)
..+.+.. + ....+..|+.+.|.|.+ .|.|+| .+.|.+................+.|.+++.+|+|.
T Consensus 202 ~~~~l~V~~~P~~~~~~~~~~~~~~g~~v~l~C~~---~g~P~p~~v~W~k~~~~~~~~~~~~~~~~l~i~~v~~~d~G~ 278 (308)
T 4fom_A 202 YSFILDIQYAPEVSVTGYDGNWFVGRKGVNLKCNA---DANPPPFKSVWSRLDGQWPDGLLASDNTLHFVHPLTFNYSGV 278 (308)
T ss_dssp EEEECCCCEEEEECCBCCCSCEETTCCSCEEECCE---EEESCEEEEECCBSSSCCCSSCBCSTTEEECCSCCCSCCCSE
T ss_pred EeEEEEEecCCeeEEcccceeeeeccccEEEEEEE---ecCCCCcEEEEEECCeECCCcEEEcCCeEEEECCCChhhCEE
Confidence 2222211 1 22334567889999988 788888 59997633221111122345567788999999999
Q ss_pred EEEEEEecCCCcceeEEEEEecCCC
Q psy7039 295 YKIEAKNDYGIDMADIEVVVVSKPG 319 (516)
Q Consensus 295 y~c~a~n~~g~~~~~~~l~v~~~p~ 319 (516)
|+|.|.|..|..+.++.|.|..+|.
T Consensus 279 Y~C~A~N~~G~~~~~~~l~V~~~P~ 303 (308)
T 4fom_A 279 YICKVTNSLGQRSDQKVIYISDPPH 303 (308)
T ss_dssp EEEEEEETTEEEEEEEECCEECCC-
T ss_pred EEEEEEeCCCcEEEEEEEEEEcCCC
Confidence 9999999999998888888887664
|
| >1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.79 E-value=3.1e-19 Score=174.32 Aligned_cols=222 Identities=17% Similarity=0.223 Sum_probs=131.6
Q ss_pred CCcEEEeCCCcCCCeEEEEEEEecCCCCCCCCCCCcceEeccC-----------------CCCCcccc---CcccceEEe
Q psy7039 68 GETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPK-----------------NLAPRIDR---STLNDVKIK 127 (516)
Q Consensus 68 ~~~~~~i~~l~~~~~y~~~~~a~n~~g~~~~s~~~~~~~~~~~-----------------~~~p~~~~---~~~~~~~v~ 127 (516)
....|.|.+++..|.|.|+|.|.|. |... ....+.+..... ..+|.+.. .......+.
T Consensus 59 ~~~~L~i~~v~~~D~G~Y~C~a~n~-~~~~-~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~~~~~~~v~ 136 (334)
T 1ry7_B 59 GPQRLQVLNASHEDSGAYSCRQRLT-QRVL-CHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWTRPERMDKKLLAVP 136 (334)
T ss_dssp --------------------------------------------------------------CCCCSCCTTCCCCEEEEE
T ss_pred ccceEEEeecccccCEEEEEEEEeC-CeEE-EEEEEEEeccCccccccccccccccccccCCCCEEeccccccceeEEec
Confidence 3568999999999999999999987 4322 111222211110 01344431 112346788
Q ss_pred cCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCce-EEeecCCeeEEEeccCCCC
Q psy7039 128 AGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRA-DVQTTKSETVLDIPFCSRS 206 (516)
Q Consensus 128 ~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~-~~~~~~~~~~l~i~~~~~~ 206 (516)
+|+.+.|.|.+. +.|.+.+.|++++..+....+. ..........|.|.+++.+
T Consensus 137 ~g~~v~l~C~~~--------------------------g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~ 190 (334)
T 1ry7_B 137 AANTVRFRCPAA--------------------------GNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPS 190 (334)
T ss_dssp TTCCEEEECCCC--------------------------CSSCCEEECCBTTBCCCTTSSTTCCCCCTTTTEEEECSCCGG
T ss_pred CCCcEEEEEEcc--------------------------CCCCCeEEEEECCEECcccccccceecccceEEEEECCCCcc
Confidence 999999999999 8999999999999888765443 1222345668999999999
Q ss_pred CCeeEEEEEEcCCCceEEEEEeecee-------e-----eeccccCCceEEEEEEEEccCCCCCceeccccc---ccceE
Q psy7039 207 DTGHYSLTLENNLGTATASAHVTGTE-------F-----TDNNVHEGKAYEYRVSAVNAAGTEKPKISLDAL---IGKRI 271 (516)
Q Consensus 207 d~g~Y~c~~~~~~g~~~~~~~~~~~~-------~-----~~~~l~~g~~~~~~~~~~~~~g~p~p~i~W~~~---~~~~~ 271 (516)
|+|.|+|.+.|..|.......+.+.. + ....+..|..+.|.|.+ .|.|.|.+.|.+. .+..+
T Consensus 191 d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~p~~~~~~~~~~~~~~G~~v~l~C~~---~g~p~p~v~W~~~~~~~g~~~ 267 (334)
T 1ry7_B 191 DRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKV---YSDAQPHIQWLKHVEVNGSKV 267 (334)
T ss_dssp GCCCEEEEEEETTEEEEEEEEEEEECCCCSSCBCCTTCSCCEEEESSCCEEECCCC---BCSSCEEEEEEECCCGGGCSB
T ss_pred cCEEEEEEEEeCCCCEEEEEEEEEecCCCCCCceEecCCCceEEeCCCCEEEEEEE---ecCCCCeEEEEECCcCCCccc
Confidence 99999999999988776655443322 1 12345679999999988 7899999999652 11111
Q ss_pred --------EEEE-------ecceeeEEEccCCCCCceEEEEEEEecCCCcceeEEEEEecCCCC
Q psy7039 272 --------KEFV-------TSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGP 320 (516)
Q Consensus 272 --------~~~~-------~~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~ 320 (516)
.+.. ......|.|.++..+|+|.|+|.|.|..|....++.|.|...|.+
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~~~~ 331 (334)
T 1ry7_B 268 GPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEYTCLAGNSIGFSHHSAWLVVLPAEEE 331 (334)
T ss_dssp CTTSSBCCCCCCCSSCSCSCTTCCCEEECSCCTTSCSEEEEEEEESSCCEEEEEEEEEECSCCC
T ss_pred cCCCCeeEEEeecCccccccccccEEEEccCCHHHCEEEEEEEeCCCCeEEEEEEEEEEECCCC
Confidence 0000 111247999999999999999999999999999999999877654
|
| >2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.79 E-value=6.9e-18 Score=161.27 Aligned_cols=237 Identities=12% Similarity=0.019 Sum_probs=164.7
Q ss_pred eeCCeeEEEecCCCCCCCCceeceEEEEEeCCC-CeEEeEEeecCCcEEEeCCCcCCCeEEEEEEEecCCCCCCCCCCCc
Q psy7039 25 WDKDHVDLQWTPPISDGGSPITGYVVEMKDKTG-NWEKAVVVPAGETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTA 103 (516)
Q Consensus 25 ~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~-~~~~~~~~~~~~~~~~i~~l~~~~~y~~~~~a~n~~g~~~~s~~~~ 103 (516)
.....+.|.+... + .+.|...+. .+.. ......|.|.+++..|.|.|+|.|.| |. ....
T Consensus 25 ~~G~~v~l~C~~~---~-------~i~W~~~~~~~~~~----~~~~~~L~i~~~~~~d~G~Y~C~~~n--g~----~~~~ 84 (290)
T 2o26_X 25 EAGDTLSLTCIDP---D-------FVRWTFKTYFNEMV----ENKKNEWIQEKAEATRTGTYTCSNSN--GL----TSSI 84 (290)
T ss_dssp ETTSCEEEEEECT---T-------EEEEEEECSSSCEE----EECSSEEEETTCCGGGCEEEEEEESS--SC----EEEE
T ss_pred cCCCcEEEEECCC---C-------cEEEecCCcceeee----cCCCceEEEeccCHHhCeEEEEEeeC--Cc----cEEE
Confidence 4567788888763 1 455655554 2111 12348999999999999999999988 43 1223
Q ss_pred ceEeccCCCCCccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCc-eeeEEe-eCCeee
Q psy7039 104 PIVAKPKNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPF-LNHGWS-INGQVC 181 (516)
Q Consensus 104 ~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~i~W~-~~~~~~ 181 (516)
.+.+. .+|.+. ..+..+.+.+|+.+.|.|.+. + |. +.+.|+ +++..+
T Consensus 85 ~l~V~---~~~~~~-~~~~~~~~~~g~~v~l~C~~~--------------------------~-p~~~~v~W~~~~g~~l 133 (290)
T 2o26_X 85 YVFVR---DPAKLF-LVGLPLFGKEDSDALVRCPLT--------------------------D-PQVSQYSLIECDGKSL 133 (290)
T ss_dssp EEEEE---CSSCCB-CCCCCEEEETTSCEEECCCBS--------------------------C-CSCEEEEEEETTSCCC
T ss_pred EEEEe---CCCccc-ccccceEEecCCeEEEeCcCC--------------------------C-CCCceEEEEeCCCcCC
Confidence 33333 234333 455668888999999999998 6 66 999994 688777
Q ss_pred ccCCceEEeecCCeeEEEeccCCCCCCe-eEEEEEEcCCCceEE---EEEee-----ceee----eeccccCCceEEEEE
Q psy7039 182 QIGGRADVQTTKSETVLDIPFCSRSDTG-HYSLTLENNLGTATA---SAHVT-----GTEF----TDNNVHEGKAYEYRV 248 (516)
Q Consensus 182 ~~~~~~~~~~~~~~~~l~i~~~~~~d~g-~Y~c~~~~~~g~~~~---~~~~~-----~~~~----~~~~l~~g~~~~~~~ 248 (516)
....++.+... ..|.|.+++.+|+| .|+|.+.|..+.... .+.+. ...+ ....+..|+.+.|.|
T Consensus 134 ~~~~~~~~~~~---~~L~i~~v~~~d~G~~Y~C~a~n~~~~~~s~~~~l~V~~~~~~~P~i~~~~~~~~v~~G~~v~l~C 210 (290)
T 2o26_X 134 PTDLTFVPNPK---AGITIKNVKRAYHRLCVRCAAQRDGTWLHSDKFTLKVREAIKAIPVVSVPETSHLLKKGDTFTVVC 210 (290)
T ss_dssp CTTCEEEEETT---TEEEEESCCGGGTTCEEEEEEEETTEEEECCCEEEEEECCCCSCCEEECSCSBCCCCTTCCEEEEE
T ss_pred CCCCceeeCCC---CCEEEecccHHHCCCEEEEEEEECCceEEeEEEEEEEEeCCCCCCccccCCCcceEecCCcEEEEE
Confidence 66655555432 47999999999999 999999997554322 22221 1112 223577899999999
Q ss_pred EEEccCCCCCce-ecccccccce---------EEEE---EecceeeEEEccCCCCCceEEEEEEEecCCCcceeEEEEEe
Q psy7039 249 SAVNAAGTEKPK-ISLDALIGKR---------IKEF---VTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVV 315 (516)
Q Consensus 249 ~~~~~~g~p~p~-i~W~~~~~~~---------~~~~---~~~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~~~~l~v~ 315 (516)
.+ .|.|.|. +.|.+..... .... .......|.|.++..+|+|.|+|.|.|..|.....+.|.|.
T Consensus 211 ~~---~g~p~p~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~ 287 (290)
T 2o26_X 211 TI---KDVSTSVNSMWLKMNPQPQHIAQVKHNSWHRGDFNYERQETLTISSARVDDSGVFMCYANNTFGSANVTTTLKVV 287 (290)
T ss_dssp EE---EESSTTCEEEEEEESSSEEECCCEECCEEEEETTEEEEEEEEEESSCCSSSCEEEEEEEECSSCEEEEEEEECC-
T ss_pred EE---ecCCcceeEEEecCCCCCccceeecccccccCceeeEEEEEEEEcCCCcccCeEEEEEEeCCCCcEEEEEEEEEE
Confidence 99 5888886 9997633221 0111 12346789999999999999999999999999888888877
Q ss_pred cCC
Q psy7039 316 SKP 318 (516)
Q Consensus 316 ~~p 318 (516)
.+|
T Consensus 288 ~~P 290 (290)
T 2o26_X 288 EKG 290 (290)
T ss_dssp ---
T ss_pred eCC
Confidence 654
|
| >2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.5e-17 Score=148.41 Aligned_cols=83 Identities=25% Similarity=0.324 Sum_probs=71.7
Q ss_pred cEEEEcCCeEEEEEEEeeecCCceEEEE--CCeecC---CCCceEEEEcCCeEEEEEcCce-ecCCceEEEEEEEcCCCc
Q psy7039 364 DMTVLAGEEFTITVPFSGRPKPTPIWTV--NGDEVS---PDGRIKFETSENQTIYRNKSAK-RATDSGSYTIQLVNTVGS 437 (516)
Q Consensus 364 ~~~v~~g~~~~l~C~~~g~p~~~i~W~~--~~~~l~---~~~~~~~~~~~~~~~l~i~~~~-~~~~~g~y~c~a~n~~G~ 437 (516)
...+..|+.+.|.|.+.|.|.+.+.|++ ++..+. .+.++.+........|.|.++. . .|.|.|+|.|.|..|.
T Consensus 101 ~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~g~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~-~d~G~Y~C~a~N~~g~ 179 (190)
T 2wv3_A 101 SENKNEGQDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIINKENYTELNIVNLQIT-EDPGEYECNATNSIGS 179 (190)
T ss_dssp EEEEETTSCEEEEEEEECSSCCEEEEEEEETTEEEECCCTTSCEEEEECSSEEEEEECSCCTT-TSCEEEEEEEECSSCE
T ss_pred cceeeCCCcEEEEEEeCccCCCceEEEEcCCCceeeeecCCCeEEEecCCCeeEEEEEecccc-CCCEEEEEEEEecCCc
Confidence 4568899999999999999999999999 666553 4567777777777899999999 8 9999999999999999
Q ss_pred eeEEEEEEEe
Q psy7039 438 DSASCKVYVV 447 (516)
Q Consensus 438 ~s~s~~l~v~ 447 (516)
...++.|.|.
T Consensus 180 ~~~~~~l~V~ 189 (190)
T 2wv3_A 180 ASVSTVLRVR 189 (190)
T ss_dssp EEEEEEEEEE
T ss_pred ceeEEEEEEE
Confidence 8888888775
|
| >1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 | Back alignment and structure |
|---|
Probab=99.78 E-value=2.4e-18 Score=168.93 Aligned_cols=266 Identities=13% Similarity=0.105 Sum_probs=153.8
Q ss_pred cccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCc--CceeeEEeeC--Ceeec-------------
Q psy7039 120 TLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSE--PFLNHGWSIN--GQVCQ------------- 182 (516)
Q Consensus 120 ~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--p~~~i~W~~~--~~~~~------------- 182 (516)
.+..+.+.+|+.+.|.|.+. +. +.+.+.|+++ +..+.
T Consensus 6 ~p~~~~v~~G~~v~L~C~~~--------------------------~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~ 59 (344)
T 1za6_B 6 QSGAEVVKPGASVKISCKAS--------------------------GYTFTDHAIHWVKQNPGQRLEWIGYFSPGNDDFK 59 (344)
T ss_dssp ECCCEEECTTCCEEEEEEEE--------------------------SSCTTSSCEEEEEECSSSCEEEEEEEETTTTEEE
T ss_pred CCCCeEEeCCCcEEEEEEcC--------------------------CccccccEEEEEEECCCCCcEEEEEEecCCCceE
Confidence 34457899999999999998 54 3567888875 22220
Q ss_pred ----cCCceEEeec--CCeeEEEeccCCCCCCeeEEEEEEcCCCceE--EEEEeec-----ee-e---eeccccCCceEE
Q psy7039 183 ----IGGRADVQTT--KSETVLDIPFCSRSDTGHYSLTLENNLGTAT--ASAHVTG-----TE-F---TDNNVHEGKAYE 245 (516)
Q Consensus 183 ----~~~~~~~~~~--~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~--~~~~~~~-----~~-~---~~~~l~~g~~~~ 245 (516)
...|+.+..+ +...+|.|.+++.+|+|.|.|.+.|..+... ..+.+.. .. + ....+.+|..+.
T Consensus 60 ~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~ 139 (344)
T 1za6_B 60 YNERFKGKATLTADTSASTAYVELSSLRSEDTAVYFCTRSLNMAYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAA 139 (344)
T ss_dssp ECTTTBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEETTTTCEECCCEEEEECSSCCBCCEEEEECCSCTTTSSSEEE
T ss_pred ECcccCCcEEEEEecCCCEEEEEECCCCcccCEEEEEEEecCcceecCcEEEEEecCCCCCCeEEEccccccccCCCcEE
Confidence 1356665543 4567999999999999999999988543221 1222221 01 1 122456899999
Q ss_pred EEEEEEccCCC-CC-ceecccccccce--EE---EEEe----cceeeEEEccCCCCCceEEEEEEEecCCCcceeEEEEE
Q psy7039 246 YRVSAVNAAGT-EK-PKISLDALIGKR--IK---EFVT----STTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVV 314 (516)
Q Consensus 246 ~~~~~~~~~g~-p~-p~i~W~~~~~~~--~~---~~~~----~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~~~~l~v 314 (516)
+.|.+ .|. |. +.+.|.+..... .. .... .....|.|.++..+| |.|+|.|.|..+.......+.+
T Consensus 140 L~C~~---~g~~P~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~~~~~~~~~~~~ 215 (344)
T 1za6_B 140 LGCLV---KDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKVEP 215 (344)
T ss_dssp EEEEE---EEEBSSCCCEEETTTTBCTTEEECCCEECTTSCEEEEEEEEEETTHHHH-BCEEEEEEEGGGTEEEEEEECC
T ss_pred EEEEE---eeEECCCeEEEEecCCccCceeECCCeECCCCCEEEEEEEEEcHHHcCC-CcEEEEEEeCCCCccceEeecc
Confidence 99998 454 54 799997632210 00 0000 012378898888877 9999999998876433322221
Q ss_pred ecC-------CCCCCCCcee--eeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeeecC-
Q psy7039 315 VSK-------PGPPTGPIDY--TTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPK- 384 (516)
Q Consensus 315 ~~~-------p~~p~~p~~~--~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~- 384 (516)
... +.+....+.. .....-.+.+. ++ .. ....|..+.|.|.+.|.++
T Consensus 216 ~v~~~~~~~~~~~~~~~l~~~~~~~~~P~v~~~--~~--------------------~~-~~~~~~~~~L~C~~~g~~P~ 272 (344)
T 1za6_B 216 KSCDKTHTCPPCGGGSSGGGSGGQPREPQVYTL--PP--------------------SR-DELTKNQVSLTCLVKGFYPS 272 (344)
T ss_dssp CCC--------------------CCBCCEEEEE--CC--------------------CG-GGGGSSSEEEEEEEEEEBSS
T ss_pred cccccccccCCCCCCccccccCCCCcCCEEEEe--CC--------------------Ch-HhccCCcEEEEEEEeeEECC
Confidence 000 0000000000 00000000000 00 00 0124566999999999644
Q ss_pred -CceEEEECCeecCCCCceEEEEcCC-----eEEEEEcCceecCCceEEEEEEEcCCCcee
Q psy7039 385 -PTPIWTVNGDEVSPDGRIKFETSEN-----QTIYRNKSAKRATDSGSYTIQLVNTVGSDS 439 (516)
Q Consensus 385 -~~i~W~~~~~~l~~~~~~~~~~~~~-----~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s 439 (516)
+.+.|+++|..+............+ ...|.|..... +|.|.|+|.|.|......
T Consensus 273 ~~~v~W~k~g~~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~-~~~g~YtC~a~~~~l~~~ 332 (344)
T 1za6_B 273 DIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRW-QQGNVFSCSVMHEALHNH 332 (344)
T ss_dssp CCEEEEESSSSCCCSEEECCCEECTTSCEEEEEEEEECHHHH-HTTCEEEEEEECTTSTTS
T ss_pred CeEEEEEECCeECCCcEecceEECCCCcEEEEEEEEEChHHc-cCCCeEEEEEEcCCCCCC
Confidence 4899999998775322111111111 13466766666 679999999999876543
|
| >2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.77 E-value=5.8e-18 Score=151.06 Aligned_cols=83 Identities=22% Similarity=0.368 Sum_probs=68.3
Q ss_pred cEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCce-eEEE
Q psy7039 364 DMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSD-SASC 442 (516)
Q Consensus 364 ~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~-s~s~ 442 (516)
...+..|+.+.|.|.+.|.|.+.+.|++++..+....++..... ..|.|.++.. .|.|.|+|.|.|..|.. +..+
T Consensus 109 ~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~---~~L~i~~~~~-~d~G~Y~C~a~n~~g~~~s~~~ 184 (192)
T 2iep_A 109 NVKIIEGLKAVLPCTTMGNPKPSVSWIKGDSALRENSRIAVLES---GSLRIHNVQK-EDAGQYRCVAKNSLGTAYSKLV 184 (192)
T ss_dssp CEEEETTSCEEECCEEEEESCCEEEEEETTEECCCCSSEEECTT---SCEEESSCCG-GGCEEEEEEEEETTEEEECCCE
T ss_pred ceEEeCCCcEEEEEEEeccCCceEEEEeCCEEccCCCcEEEecC---CcEEEecCCh-hhCEEEEEEEEcCCCcEEEEEE
Confidence 35678999999999999999999999999998876666554322 2699999999 99999999999999986 5568
Q ss_pred EEEEecCC
Q psy7039 443 KVYVVDKP 450 (516)
Q Consensus 443 ~l~v~~~p 450 (516)
.|.|..+|
T Consensus 185 ~l~V~~pp 192 (192)
T 2iep_A 185 KLEVEVFA 192 (192)
T ss_dssp EEEEEC--
T ss_pred EEEEEeCC
Confidence 88887543
|
| >4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R | Back alignment and structure |
|---|
Probab=99.77 E-value=1.6e-18 Score=167.71 Aligned_cols=216 Identities=13% Similarity=0.061 Sum_probs=147.1
Q ss_pred CcEEEeCCCcCCCeEEEEEEEecCCCCCCCCCCCcceEeccCCCCCccccCcccceEEecCCeEEEEEeeeeccccccCc
Q psy7039 69 ETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSP 148 (516)
Q Consensus 69 ~~~~~i~~l~~~~~y~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~ 148 (516)
..+|.|.+++..|.|.|+|++.+..+.... ....+. ...+|.+. .......+..|+.+.+.|...+
T Consensus 78 ~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~--~~~~l~---v~~~P~~~-~~~~~~~~~~~~~~~~~C~~~~-------- 143 (313)
T 4fqp_A 78 NASLRMFGLRVEDEGNYTCLFVTFPQGSRS--VDIWLR---VLAKPQNT-AEVQKVQLTGEPVPMARCVSTG-------- 143 (313)
T ss_dssp BCCEEECSCCGGGCEEEEEEEECSSSCEEE--EEEEEC---CBBCCEEE-EEECCBCCCSSCEEEEEEEEEE--------
T ss_pred ceEEEECcCChhhCEEEEEEEeeccCccee--eeeeee---eccCCcce-ecccceEeecCceEEEEEEccC--------
Confidence 467999999999999999998653321111 111121 22345444 3445566778889999998763
Q ss_pred cccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEeecCC---eeEEEeccCCCCCCeeEEEEEEcCCCceEEE
Q psy7039 149 LRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTTKS---ETVLDIPFCSRSDTGHYSLTLENNLGTATAS 225 (516)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~---~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~ 225 (516)
+.|.+.+.|++++..+....+......+. .+.|.|.+...+|.|.|+|.+.|..+.....
T Consensus 144 -----------------~~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~ 206 (313)
T 4fqp_A 144 -----------------GRPPAQITWHSDLGGMPNTSQVPGFLSGTVTVTSLWILVPSSQVDGKNVTCKVEHESFEKPQL 206 (313)
T ss_dssp -----------------EBSCCEEEEEETTCCEEEEEEEECSSTTCEEEEEEEEECCCGGGTTCEEEEEEECTTSSSCEE
T ss_pred -----------------ccCCcEEEeecCCccccccceeeeecccccccceeeeecccccccCeeEEEEEEccCcCccce
Confidence 78999999999988775433322222222 2468999999999999999999976654333
Q ss_pred E--Eeece---ee-----eeccccCCceEEEEEEEEccCCCCCc-eecccccccceEEEEEecceeeEEEccCCCCCceE
Q psy7039 226 A--HVTGT---EF-----TDNNVHEGKAYEYRVSAVNAAGTEKP-KISLDALIGKRIKEFVTSTTASLNIKNSVRKDSGI 294 (516)
Q Consensus 226 ~--~~~~~---~~-----~~~~l~~g~~~~~~~~~~~~~g~p~p-~i~W~~~~~~~~~~~~~~~~~~l~i~~l~~~d~g~ 294 (516)
. .+.+. .+ ....+..|+.+.|.|.+ .|.|.| .+.|.+....... ........|.|.++...|+|.
T Consensus 207 ~~~~l~V~~~P~v~~~~~~~~~~~~g~~v~l~C~~---~g~P~p~~v~W~~~~~~l~~-~~~~~~~~L~i~~v~~~d~G~ 282 (313)
T 4fqp_A 207 LTVNLTVYYPPEVSISGYDNNWYLGQNEATLTCDA---RSNPEPTGYNWSTTMGPLPP-FAVAQGAQLLIRPVDKPINTT 282 (313)
T ss_dssp EEEECCBCEEEEEEEECCCSCEETTCCCEEEEEEE---EEESCCCEEEEEETTBSCCT-TEEEETTEEEECCCSSCCEEE
T ss_pred eeeecccccCCccccccccceeecCCCeEEEEEEe---cCCCCCcEEEEEECCEECCC-ceEEeCCEEEECcCChhhCEE
Confidence 2 22211 11 22335568899999998 788888 5999763221100 011234589999999999999
Q ss_pred EEEEEEecCCCcceeEEEEEecCCC
Q psy7039 295 YKIEAKNDYGIDMADIEVVVVSKPG 319 (516)
Q Consensus 295 y~c~a~n~~g~~~~~~~l~v~~~p~ 319 (516)
|+|.|.|..|..+..+.|.|...|+
T Consensus 283 Y~C~a~N~~G~~~~~~~l~V~~~PP 307 (313)
T 4fqp_A 283 LICNVTNALGARQAELTVQVKEGPP 307 (313)
T ss_dssp EEEEEECSSCEEEEEEEEEEECCC-
T ss_pred EEEEEEeCCCcEEEEEEEEEEeCCC
Confidence 9999999999988888888877643
|
| >2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A | Back alignment and structure |
|---|
Probab=99.77 E-value=2.2e-18 Score=167.58 Aligned_cols=242 Identities=11% Similarity=0.078 Sum_probs=152.3
Q ss_pred CeEEEEEeeeeccccccCccccccccccCccceeecCc-C-ceeeEEeeCCeeeccCCce--EEeecCC---eeEEEecc
Q psy7039 130 QSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSE-P-FLNHGWSINGQVCQIGGRA--DVQTTKS---ETVLDIPF 202 (516)
Q Consensus 130 ~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p-~~~i~W~~~~~~~~~~~~~--~~~~~~~---~~~l~i~~ 202 (516)
+.+.|.|.+. +. | .+.|+|++++..+...... .....+. .+.|.|.+
T Consensus 25 ~~v~L~C~~~--------------------------g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~l~i~~ 78 (323)
T 2wqr_A 25 PTIQLLCLVS--------------------------GYTPGTIQITWLEDGQVMDVDLSTASTTQEGELASTQSELTLSQ 78 (323)
T ss_dssp SEEEEEEEEE--------------------------EECCCCEEEEEEETTEECCGGGEEEEEEEETTEEEEEEEEEEEH
T ss_pred CcEEEEEEEe--------------------------CeECCCeEEEEEECCEEcccceecCCcCccCCcEEEEEEEEEcH
Confidence 6999999998 64 3 5799999999888654321 1111221 24678888
Q ss_pred CCCCCCeeEEEEEEcCCCceEEEEEe-------eceee----eeccccCCceEEEEEEEEccCC-CCCc---eecccccc
Q psy7039 203 CSRSDTGHYSLTLENNLGTATASAHV-------TGTEF----TDNNVHEGKAYEYRVSAVNAAG-TEKP---KISLDALI 267 (516)
Q Consensus 203 ~~~~d~g~Y~c~~~~~~g~~~~~~~~-------~~~~~----~~~~l~~g~~~~~~~~~~~~~g-~p~p---~i~W~~~~ 267 (516)
...+|.|.|+|.+.|..+.....+.. ....+ ....+..|+.+.|.|.+ .| .|.| .+.|.+..
T Consensus 79 ~~~~d~g~Y~C~a~n~~~~~~~~~~~~~~~~~~~p~v~~~~p~~~~v~~G~~v~L~C~~---~g~~P~p~~~~i~W~k~~ 155 (323)
T 2wqr_A 79 KHWLSDRTYTCQVTYQGHTFEDSTKKCADSNPRGVSAYLSRPSPFDLFIRKSPTITCLV---VDLAPSKGTVQLTWSRAS 155 (323)
T ss_dssp HHHHTTCCEEEEEEETTEEEEEEECCCCCSSGGGCEEEECCCCHHHHHTSSCCEEEEEE---EEECCCSSCCEEEEEETT
T ss_pred HHcCCCCcEEEEEEeCCCCcceeeecCCCCCCCCCEEEEcCCCHHHhccCCeEEEEEEE---eccCCCCCceEEEEEECC
Confidence 88889999999999987765544321 00111 11236679999999998 45 3555 89996522
Q ss_pred cceEE----EE--E-e---cceeeEEEccCCCCCceEEEEEEEecCCCcceeEEEEEecCCCCCCCC-ceeeeccCCeeE
Q psy7039 268 GKRIK----EF--V-T---STTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGP-IDYTTVTPESVS 336 (516)
Q Consensus 268 ~~~~~----~~--~-~---~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~p~~p-~~~~~~~~~~~~ 336 (516)
+.... .. . . .....|.|.++..+|+|.|+|.|.|..+.... .+.+.........| +.+..
T Consensus 156 g~~~~~~~~~~~~~~~g~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~~~~~~--~~~v~~~~~~~~~P~v~~~~------- 226 (323)
T 2wqr_A 156 GKPVNHSTRKEEKQRNGTLTVTSTLPVGTRDWIEGETYQCRVTHPHLPRAL--MRSTTKTSGPRAAPEVYAFA------- 226 (323)
T ss_dssp CCCCCCCCCEEEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECTTSSSCE--EEEECCCCSCCBCCEEEEEE-------
T ss_pred CcccccccCCCccCCCCCEEEEEEEEECHHHccCCCCEEEEEECCCCCCCe--eeEEEccCCCCCCCEEEEeC-------
Confidence 11110 00 0 0 12347999999999999999999998644322 33332111010111 11100
Q ss_pred EEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeeecC-C-ceEEEECCeecCCCCceEE----EEcC--
Q psy7039 337 MSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPK-P-TPIWTVNGDEVSPDGRIKF----ETSE-- 408 (516)
Q Consensus 337 l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~-~-~i~W~~~~~~l~~~~~~~~----~~~~-- 408 (516)
.......|+.+.|.|.+.|.++ + .|.|+++|..+.... +.. ...+
T Consensus 227 --------------------------~~~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~l~~~~-~~~~~~~~~~~g~ 279 (323)
T 2wqr_A 227 --------------------------TPEWPGSRDKRTLACLIQNFMPEDISVQWLHNEVQLPDAR-HSTTQPRKTKGSG 279 (323)
T ss_dssp --------------------------CCCCTTCTTEEEEEEEEEEEBSSCCEEEEEETTEECCGGG-EEECCCEECSSSS
T ss_pred --------------------------CChHHhcCCcEEEEEEeeeeeCCCcEEEEEECCEECCCCc-eeecCcccCCCCc
Confidence 0000112899999999998544 3 799999998875431 111 0111
Q ss_pred --CeEEEEEcCceecCCceEEEEEEEcCCCc
Q psy7039 409 --NQTIYRNKSAKRATDSGSYTIQLVNTVGS 437 (516)
Q Consensus 409 --~~~~l~i~~~~~~~~~g~y~c~a~n~~G~ 437 (516)
..+.|.|..+.. .|.|.|+|.|.|..+.
T Consensus 280 ~~~~s~L~i~~~~~-~d~g~Y~C~a~n~~~~ 309 (323)
T 2wqr_A 280 FFVFSRLEVTRAEW-EQKDEFICRAVHEAAS 309 (323)
T ss_dssp EEEEEEEEEEHHHH-HHCCCEEEEEECTTST
T ss_pred EEEEEEEEEChHHc-cCCCEEEEEEEeCCCC
Confidence 124689999998 9999999999999876
|
| >1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A | Back alignment and structure |
|---|
Probab=99.77 E-value=9.4e-17 Score=164.73 Aligned_cols=275 Identities=12% Similarity=0.073 Sum_probs=158.0
Q ss_pred CcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcC--ceeeEEeeCC--eee-------------
Q psy7039 119 STLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEP--FLNHGWSING--QVC------------- 181 (516)
Q Consensus 119 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p--~~~i~W~~~~--~~~------------- 181 (516)
..+..+.+.+|+.+.|.|.+. +.+ ...+.|++.. ...
T Consensus 6 ~~p~~~~v~~G~~v~L~C~~~--------------------------~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~ 59 (475)
T 1iga_A 6 EQSGAEVKKPGASVKVSCKAS--------------------------GYSFTSYGLHWVRQAPGQRLEWMGWISAGTGNT 59 (475)
T ss_pred ccCCcEEEeCCCCEEEEEEec--------------------------CCCCCCceEEEEEeCCCCCcEEEEEEecCCCce
Confidence 345668899999999999998 432 4556676632 110
Q ss_pred ----ccCCceEEeec--CCeeEEEeccCCCCCCeeEEEEEEcCCCc--------eEEEEEeec-----eeee---ecccc
Q psy7039 182 ----QIGGRADVQTT--KSETVLDIPFCSRSDTGHYSLTLENNLGT--------ATASAHVTG-----TEFT---DNNVH 239 (516)
Q Consensus 182 ----~~~~~~~~~~~--~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~--------~~~~~~~~~-----~~~~---~~~l~ 239 (516)
....|+.+... +...+|.|.+++.+|+|.|.|.+.+..|. ....+.+.. ..+. ...+.
T Consensus 60 ~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~ 139 (475)
T 1iga_A 60 KYSQKFRGRVTFTRDTSATTAYMGLSSLRPEDTAVYYCARDPYGGGKSEFDYWGQGTLVTVSSASPTSPKVFPLSLCSTQ 139 (475)
T ss_pred ecCcccCCceEEEEcCCCCeEEEEECCCChhhCEEEEEEEeccCCCccceeeecCceEEEeccCCCcCCeEEecCccccC
Confidence 01245555433 34578999999999999999999987642 111222221 0111 11235
Q ss_pred CCceEEEEEEEEccCCC-CC-c-eecccccccce-EEE--EEe--c-----ceeeEEEccCCCCCceEEEEEEEecCCCc
Q psy7039 240 EGKAYEYRVSAVNAAGT-EK-P-KISLDALIGKR-IKE--FVT--S-----TTASLNIKNSVRKDSGIYKIEAKNDYGID 306 (516)
Q Consensus 240 ~g~~~~~~~~~~~~~g~-p~-p-~i~W~~~~~~~-~~~--~~~--~-----~~~~l~i~~l~~~d~g~y~c~a~n~~g~~ 306 (516)
+|..+.|.|.+ .|. |. | .+.|.+..... ... ... . ....|.|..+...|.|.|+|.|.|..+..
T Consensus 140 ~g~~v~L~C~~---~g~~P~~p~~v~W~~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~ 216 (475)
T 1iga_A 140 PDGNVVIACLV---QGFFPQEPLSVTWSESGQGVTARNFPPSQDASGDLYTTSSQLTLPATQCLAGKSVTCHVKHYTNPS 216 (475)
T ss_pred CCCeEEEEEEE---eeecCCCceEEEEcCCCcccceEeCCceecCCCCcEEEEEEEEechhHcCCCceEEEEEEECCCCc
Confidence 79999999998 565 55 4 99997632110 000 000 1 12357888888899999999999988642
Q ss_pred -ceeEEEEEecCCCCCCCCceee-eccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeeecC
Q psy7039 307 -MADIEVVVVSKPGPPTGPIDYT-TVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPK 384 (516)
Q Consensus 307 -~~~~~l~v~~~p~~p~~p~~~~-~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~ 384 (516)
...+.+.|...+.......... ........+.-.+ +....+..|+.+.|.|.+.|.++
T Consensus 217 ~~~~v~l~V~~~~~~~~~~~~~~~~~~~~~p~v~~~~--------------------p~~~~~~~G~~v~L~C~~~g~~p 276 (475)
T 1iga_A 217 QDVTVPCPVPSTPPTPSPSTPPTPSPSCCHPRLSLHR--------------------PALEDLLLGSEANLTCTLTGLRD 276 (475)
T ss_pred eeeeEecccccCcccccccccccCCCCCCCcEEEEcC--------------------CChHHhccCCceEEEEEEEcccC
Confidence 2222322211110000000000 0000000000001 11123578999999999998754
Q ss_pred ---CceEEEECCeecCCCCce-EEEE-cC---CeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEEE
Q psy7039 385 ---PTPIWTVNGDEVSPDGRI-KFET-SE---NQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVY 445 (516)
Q Consensus 385 ---~~i~W~~~~~~l~~~~~~-~~~~-~~---~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~ 445 (516)
+.|.| ++..+...... .... .+ ....|.|.++.. .|.|.|+|.|.|..|.......|.
T Consensus 277 ~~~~~i~W--~~~~~~~~~~~~~~~~~~g~~~~~~~L~I~~~~~-~d~G~Y~C~a~n~~~~~~~~~~v~ 342 (475)
T 1iga_A 277 ASGVTFTW--TPSSGKSAVQGPPERDLCGCYSVSSVLPGCAEPW-NHGKTFTCTAAYPESKTPLTATLS 342 (475)
T ss_pred CCceEEEE--CCCCcCCccccCceECCCCCEEEEEEEEEchHHh-ccCCcEEEEEEcCCCCCceEEEee
Confidence 58999 43333211111 0000 11 234799999999 999999999999999865555553
|
| >3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X* | Back alignment and structure |
|---|
Probab=99.76 E-value=3e-17 Score=156.56 Aligned_cols=214 Identities=14% Similarity=0.056 Sum_probs=145.8
Q ss_pred cCCcEEEeCCCcCCCeEEEEEEEecCCCCCCCCCCCcceEeccCCCCCccccCcccceEEecCCeEEEEEeeeecccccc
Q psy7039 67 AGETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTK 146 (516)
Q Consensus 67 ~~~~~~~i~~l~~~~~y~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~ 146 (516)
.....|.|.+++..|.|.|+|.|.|..|.. .....+.+.. +|......+..+.+.+|+.+.|.|.+.
T Consensus 48 ~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~---~~~~~l~V~~---~~~~~~~~~~~~~v~~g~~v~L~C~~~------- 114 (289)
T 3ejj_X 48 SPGSTLTTRNATFKNTGTYRCTELEDPMAG---STTIHLYVKD---PAHSWNLLAQEVTVVEGQEAVLPCLIT------- 114 (289)
T ss_dssp SSCCEEEESSCCGGGCEEEEEECCC--------CEEEEEEECC---SSCSEEESCSEEEEETTSCEEECEEES-------
T ss_pred CCccEEEEeeeccccCEEEEEEEeccCCcc---eeEEEEEEeC---CCcceecccceEEEecCCceEeEEEcc-------
Confidence 356889999999999999999998876642 2233344332 222111445778899999999999999
Q ss_pred CccccccccccCccceeecCcCcee-eEEee-CCeeeccCCceEEeecCCeeEEEeccCCCCCCeeEEEEEEc-CCCceE
Q psy7039 147 SPLRALGVRANSTKGWVKLSEPFLN-HGWSI-NGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLEN-NLGTAT 223 (516)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~p~~~-i~W~~-~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~-~~g~~~ 223 (516)
+.+.+. +.|++ ++..+....++.+... ..|.|.+++.+|+|.|+|.+.+ ..+...
T Consensus 115 -------------------~~~~~~~v~W~~~~~~~~~~~~~~~~~~~---~~L~i~~v~~~d~G~Y~C~a~~~~~~~~~ 172 (289)
T 3ejj_X 115 -------------------DPALKDSVSLMREGGRQVLRKTVYFFSPW---RGFIIRKAKVLDSNTYVCKTMVNGRESTS 172 (289)
T ss_dssp -------------------CGGGGGSEEEEEGGGEECCTTCCEEEETT---TEEEESSCCGGGCEEEEEEEEETTEEEEC
T ss_pred -------------------CCCcceEEEEEecCCeecCCCccEEECCC---CCEEEeecccccCEEEEEEEEeCCCcccc
Confidence 766654 99986 6666665666655432 4699999999999999999994 333322
Q ss_pred EEEEeece-------ee----eeccccCCceEEEEEEEEccCC-CCCceeccccccc---ceEEEE----EecceeeEEE
Q psy7039 224 ASAHVTGT-------EF----TDNNVHEGKAYEYRVSAVNAAG-TEKPKISLDALIG---KRIKEF----VTSTTASLNI 284 (516)
Q Consensus 224 ~~~~~~~~-------~~----~~~~l~~g~~~~~~~~~~~~~g-~p~p~i~W~~~~~---~~~~~~----~~~~~~~l~i 284 (516)
....+.+. .+ ....+.+|..+.+.|.+ .| .|.|.+.|.+... ...... .......|.|
T Consensus 173 ~~~~l~V~~~~~~~p~i~~~~~~~~~~~g~~~~l~C~~---~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i 249 (289)
T 3ejj_X 173 TGIWLKVNRVHPEPPQIKLEPSKLVRIRGEAAQIVCSA---TNAEVGFNVILKRGDTKLEIPLNSDFQDNYYKKVRALSL 249 (289)
T ss_dssp CCEEEEEESSCCCCCEEEEESSSEECCSSSCEEEEEEE---EESSSCCEEEEEETTEECCCCEEEEECSSSEEEEEEEEE
T ss_pred ccEEEEEEECCCCCCeEEecCCceEEEeCCcEEEEEEe---CCCCCceEEEEEECCEEeeccCCcccccceEEeeEEEEE
Confidence 22222221 11 12234689999999998 44 7889999965321 111110 0123578999
Q ss_pred ccCCCCCceEEEEEEEecCCCcceeEEEEEecCC
Q psy7039 285 KNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKP 318 (516)
Q Consensus 285 ~~l~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p 318 (516)
.++..+|.|.|+|.|.|..|....++.|.+...+
T Consensus 250 ~~v~~~d~G~Y~C~a~N~~G~~~~s~~L~~~~~~ 283 (289)
T 3ejj_X 250 NAVDFQDAGIYSCVASNDVGTRTATMNFQVVESH 283 (289)
T ss_dssp SSCCSSSCEEEEEEEECSSCEEEEEEEEECC---
T ss_pred EeecccCCEEEEEEEEcCCCCccccEEEEEEecc
Confidence 9999999999999999999999998888876554
|
| >1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H* | Back alignment and structure |
|---|
Probab=99.76 E-value=2.1e-17 Score=168.68 Aligned_cols=272 Identities=13% Similarity=0.102 Sum_probs=155.2
Q ss_pred ccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcC--ceeeEEeeC--Cee---e------------
Q psy7039 121 LNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEP--FLNHGWSIN--GQV---C------------ 181 (516)
Q Consensus 121 ~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p--~~~i~W~~~--~~~---~------------ 181 (516)
+..+.+.+|+.+.|.|.+. +.+ .+.+.|++. +.. +
T Consensus 7 ~~~~~v~~G~~v~L~C~~~--------------------------~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~ 60 (457)
T 1hzh_H 7 SGAEVKKPGASVKVSCQAS--------------------------GYRFSNFVIHWVRQAPGQRFEWMGWINPYNGNKEF 60 (457)
T ss_dssp CCCEEECTTCCEEECEEEE--------------------------SSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEE
T ss_pred CCceEEcCCCCEEEEEEec--------------------------CccccCcEEEEEEeCCCCCcEEEEEEecCCCceec
Confidence 3457889999999999998 544 556777662 111 1
Q ss_pred --ccCCceEEeec--CCeeEEEeccCCCCCCeeEEEEEEcCCC------------c--eEEEEEeec-----ee-ee---
Q psy7039 182 --QIGGRADVQTT--KSETVLDIPFCSRSDTGHYSLTLENNLG------------T--ATASAHVTG-----TE-FT--- 234 (516)
Q Consensus 182 --~~~~~~~~~~~--~~~~~l~i~~~~~~d~g~Y~c~~~~~~g------------~--~~~~~~~~~-----~~-~~--- 234 (516)
....|+.+... +...+|.|.+++.+|+|.|+|.+.+..| . ....+.+.. .. +.
T Consensus 61 ~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~ 140 (457)
T 1hzh_H 61 SAKFQDRVTFTADTSANTAYMELRSLRSADTAVYYCARVGPYSWDDSPQDNYYMDVWGKGTTVIVSSASTKGPSVFPLAP 140 (457)
T ss_dssp CTTTTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECCCCCSSCCTTTTCSCCBCCCCEEEEECSCCCBCCEEEEECC
T ss_pred CccccCceEEEEeCCCCEEEEEECCCCcccCEEEEEEEecCCccccccccccccceECCcEEEEecCCCCCCCeEEecCc
Confidence 01346665443 4567999999999999999999998754 1 112222221 11 11
Q ss_pred eccccCCceEEEEEEEEccCCC-CC-ceeccccccc----ceEEEEEec-----ceeeEEEccCCCCCceEEEEEEEecC
Q psy7039 235 DNNVHEGKAYEYRVSAVNAAGT-EK-PKISLDALIG----KRIKEFVTS-----TTASLNIKNSVRKDSGIYKIEAKNDY 303 (516)
Q Consensus 235 ~~~l~~g~~~~~~~~~~~~~g~-p~-p~i~W~~~~~----~~~~~~~~~-----~~~~l~i~~l~~~d~g~y~c~a~n~~ 303 (516)
...+.+|..+.+.|.+ .|. |. +.+.|.+... ......... ....|.|.++..+| |.|+|.|.|..
T Consensus 141 ~~~~~~g~~v~L~C~~---~g~~P~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~ 216 (457)
T 1hzh_H 141 SSKSTSGGTAALGCLV---KDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKP 216 (457)
T ss_dssp CSCCCTTCCEEEEEEE---ESBBSCCCEEEETTTTBCTTEEEEEEEECTTSCEEEEEEEEECSGGGGT-SCCEEEEEEGG
T ss_pred cccccCCCcEEEEEEE---eEEeCCCeEEEEEeCCEeccceEcCceECCCCCEEEEEEEEecccccCC-ceEEEEEEeCC
Confidence 1235689999999998 454 54 7899976331 111111111 12378999999989 99999999987
Q ss_pred CCcceeEEEEEecCCCCCCCCceeee--ccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEee
Q psy7039 304 GIDMADIEVVVVSKPGPPTGPIDYTT--VTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSG 381 (516)
Q Consensus 304 g~~~~~~~l~v~~~p~~p~~p~~~~~--~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g 381 (516)
+.......+.+...+..-..++.... ...-.+.+ .+|. ....+..|+.+.|.|.+.|
T Consensus 217 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~p~v~~--~~p~-------------------~~~~~~~G~~v~L~C~~~g 275 (457)
T 1hzh_H 217 SNTKVDKKAEPKSCDKTHTCPPCPAPELLGGPSVFL--FPPK-------------------PKDTLMISRTPEVTCVVVD 275 (457)
T ss_dssp GTEEEEEECCCCCSCSSCSCCSCCCCCCSSSCEEEE--ECCC-------------------HHHHHCTTSCCCEEEEEEC
T ss_pred CCcceeEEecccCCCcccccCCCCCccccCCceEEe--ECcC-------------------chhhcccCCceEEEEEEEc
Confidence 66443333332221100000000000 00000000 0110 0011457999999999998
Q ss_pred ecCC----ceEEEECCeecCCCCceEEE-EcCCe----EEEEEcCceecCCceEEEEEEEcCCCceeEEEEE
Q psy7039 382 RPKP----TPIWTVNGDEVSPDGRIKFE-TSENQ----TIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKV 444 (516)
Q Consensus 382 ~p~~----~i~W~~~~~~l~~~~~~~~~-~~~~~----~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l 444 (516)
.+++ .|.|++++..+......... ...+. ..|.|..... .|.|.|+|.|.|..+.......+
T Consensus 276 ~~p~p~~~~i~W~k~~~~~~~~~~~~~~~~~~g~~~~~~~l~i~~~d~-~d~G~Y~C~a~n~~~~~~~~~~v 346 (457)
T 1hzh_H 276 VSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDW-LNGKEYKCKVSNKALPAPIEKTI 346 (457)
T ss_dssp CCTTCCCCEEEEEETTEEECCCEEEEEEECTTSCEEEEEEECCCHHHH-HHTCCEEEEEECTTSSSCEEEEE
T ss_pred ccCCCCceEEEEEeCCccccccccccceecCCCcEEEEEEEEECHHHc-cCCCcEEEEEeCCCCCCcceEEE
Confidence 8653 89999999876432221111 11111 1222323333 34999999999887665444333
|
| >4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=4.6e-18 Score=153.27 Aligned_cols=165 Identities=12% Similarity=-0.001 Sum_probs=121.6
Q ss_pred cccCCceEEEEEEEEccCCCCCceecccccccc----------------------eEEEEEecceeeEEEccCCCCCceE
Q psy7039 237 NVHEGKAYEYRVSAVNAAGTEKPKISLDALIGK----------------------RIKEFVTSTTASLNIKNSVRKDSGI 294 (516)
Q Consensus 237 ~l~~g~~~~~~~~~~~~~g~p~p~i~W~~~~~~----------------------~~~~~~~~~~~~l~i~~l~~~d~g~ 294 (516)
....|+...|.|......|.|.|.+.|.+.... ...+........|.|.+++.+|+|.
T Consensus 4 ta~~Ge~v~L~C~~~~v~~~p~~~V~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~ 83 (203)
T 4fa8_A 4 TAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHDGN 83 (203)
T ss_dssp EEETTCCEEEEEECSSTTCSTTSEEEEEEEETTTEEEEEEEEETTEEEECGGGBTTEEEEEETTEEEEEESSCCGGGCEE
T ss_pred EEEcCCCEEEEeeeeccCCCCCcEEEEEEcCCCcceEEEEecCCceEEeeccccceEEEEEcCCEEEEEEccCCHHHCeE
Confidence 346799999999877778899999999762111 1122234556789999999999999
Q ss_pred EEEEEEecCCCcceeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEE
Q psy7039 295 YKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFT 374 (516)
Q Consensus 295 y~c~a~n~~g~~~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~ 374 (516)
|+|.|.|..|.....+.|.|..+|... ..+....+.+|+.+.
T Consensus 84 Y~C~a~n~~g~~~~~~~l~V~~p~~~~--------------------------------------~~~~~~~v~~g~~~~ 125 (203)
T 4fa8_A 84 YLCRMKLGETEVTKQEHLSVVKPLTLS--------------------------------------VHSERSQFPDFSVLT 125 (203)
T ss_dssp EEEEEEETTEEEEEEEEEEEEEEEEEE--------------------------------------EEEEECCSSCSCCEE
T ss_pred EEEEEEcCCCcEEEEEEEEecCCceee--------------------------------------ecceeEEEcCCCEEE
Confidence 999999999988888888886543221 112334567899999
Q ss_pred EEEEEeeecCCceEEEECCeecC----CCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeE
Q psy7039 375 ITVPFSGRPKPTPIWTVNGDEVS----PDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSA 440 (516)
Q Consensus 375 l~C~~~g~p~~~i~W~~~~~~l~----~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~ 440 (516)
|.|.+.|.|.|.|.|++++..+. .+.++.+..++....+.|.++.. .|.|.|+|.|.|..|....
T Consensus 126 l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~r~~~~~~g~l~il~i~~v~~-~D~G~YtC~A~N~~G~a~~ 194 (203)
T 4fa8_A 126 VTCTVNAFPHPHVQWLMPEGVEPAPTAANGGVMKEKDGSLSVAVDLSLPK-PWHLPVTCVGKNDKEEAHG 194 (203)
T ss_dssp EEEEEEEESCCEEEECCC------------CCEECTTSCEEEEEEEEECS-SCCCCEEEEEESSSCEEEE
T ss_pred EEEEcCCCCCCEEEEEECCeeecCcccccceEEEeCCCCEEEEEECCCCH-HHCEEEEEEEEcCCCEEEE
Confidence 99999999999999988765432 23455555445555677789999 9999999999999998654
|
| >3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=2.8e-17 Score=152.37 Aligned_cols=140 Identities=20% Similarity=0.260 Sum_probs=95.8
Q ss_pred eeEEEccCCCCCceEEEEEEEecCCCcceeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccc
Q psy7039 280 ASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSD 359 (516)
Q Consensus 280 ~~l~i~~l~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~ 359 (516)
..|.|.++...|+|.|+|.+.|..|.......+.|...+..+. ....
T Consensus 72 ~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~~~~l~V~~~~~~~~--~~~~------------------------------- 118 (241)
T 3grw_A 72 WSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRP--ILQA------------------------------- 118 (241)
T ss_dssp TEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCCCCCC--EEEE-------------------------------
T ss_pred eEEEEEeCCcccCEEEEEEEeecCCceEEEEEEEEeccCCCCc--eeec-------------------------------
Confidence 3567777777777777777777766666666777765433211 1000
Q ss_pred cccccEEEEcCCeEEEEEEEeeecCCceEEEE----CCeecCCCCceEEEE--------cCCeEEEEEcCceecCCceEE
Q psy7039 360 LSIRDMTVLAGEEFTITVPFSGRPKPTPIWTV----NGDEVSPDGRIKFET--------SENQTIYRNKSAKRATDSGSY 427 (516)
Q Consensus 360 ~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~----~~~~l~~~~~~~~~~--------~~~~~~l~i~~~~~~~~~g~y 427 (516)
.......+..|+.+.|.|.+.+.|.+.+.|++ ++..+..+....... ......|.|.++.. .|.|.|
T Consensus 119 ~~~~~~~~~~g~~v~L~C~~~~~p~p~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~-~d~G~Y 197 (241)
T 3grw_A 119 GLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRLANVSE-RDGGEY 197 (241)
T ss_dssp CTTCSEECCTTCCEEEEEEEECSSCCEEEEEEECCSSSCSSCTTTCCCEEEEEEEECSBSEEEEEEEECSCCG-GGCEEE
T ss_pred CCCccceecCCCEEEEEEEEecCCCCEEEEEEcccCCCcccCCCCceeeeeeeEeeeeecCCceEEEECcCCc-ccCcEE
Confidence 12344567889999999999999999999999 777665443221111 11346799999999 999999
Q ss_pred EEEEEcCCCceeEEEEEEEecCCCCC
Q psy7039 428 TIQLVNTVGSDSASCKVYVVDKPSPP 453 (516)
Q Consensus 428 ~c~a~n~~G~~s~s~~l~v~~~p~~P 453 (516)
+|.|.|..|..+.++.|.|..+|.+|
T Consensus 198 ~C~a~N~~g~~~~~~~l~V~~~p~~~ 223 (241)
T 3grw_A 198 LCRATNFIGVAEKAFWLSVHGPRAAE 223 (241)
T ss_dssp EEEEECSSCEEEEEEEEEC-------
T ss_pred EEEEecCcceEEEEEEEEecCCCCCC
Confidence 99999999999999999999888777
|
| >3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C | Back alignment and structure |
|---|
Probab=99.75 E-value=2e-17 Score=152.11 Aligned_cols=140 Identities=21% Similarity=0.297 Sum_probs=100.1
Q ss_pred eeEEEccCCCCCceEEEEEEEecCCCcceeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccc
Q psy7039 280 ASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSD 359 (516)
Q Consensus 280 ~~l~i~~l~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~ 359 (516)
..|.|.+++..|+|.|+|.+.|..|.......+.|...+..+.. . ..
T Consensus 76 ~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~l~V~~~~~~~p~--~-------------------------------~~ 122 (231)
T 3ojm_B 76 WSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSRHRPI--L-------------------------------QA 122 (231)
T ss_dssp TEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCCCCCCE--E-------------------------------CT
T ss_pred ceEEEecCCcccCEEEEEEEecccCcccccEEEEEEcCCCCCCc--e-------------------------------ee
Confidence 35677777777777777777777776666677777655432210 0 00
Q ss_pred cccccEEEEcCCeEEEEEEEeeecCCceEEEE----CCeecCCCCceEE--EE-----cCCeEEEEEcCceecCCceEEE
Q psy7039 360 LSIRDMTVLAGEEFTITVPFSGRPKPTPIWTV----NGDEVSPDGRIKF--ET-----SENQTIYRNKSAKRATDSGSYT 428 (516)
Q Consensus 360 ~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~----~~~~l~~~~~~~~--~~-----~~~~~~l~i~~~~~~~~~g~y~ 428 (516)
..+....+..|+.+.|.|.+.+.|.+.+.|++ ++..+..+..... .. ......|.|.++.. .|.|.|+
T Consensus 123 ~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~-~d~G~Y~ 201 (231)
T 3ojm_B 123 GLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTE-ADAGEYI 201 (231)
T ss_dssp TCSCCEEEETTCCEEEECCEECSSCCEEEEEEECCBTTBSBCTTSCBCEEEEEECSTTCSCTTEEEECSCCG-GGCEEEE
T ss_pred ccCCceEEEeCCcEEEEEEEecCCCCEEEEEECCCCCCccccCCCcceEeEecccccccCCccEEEEecCCH-HHCeEEE
Confidence 12345678899999999999999999999999 7766643332111 11 11224699999999 9999999
Q ss_pred EEEEcCCCceeEEEEEEEecCCCCC
Q psy7039 429 IQLVNTVGSDSASCKVYVVDKPSPP 453 (516)
Q Consensus 429 c~a~n~~G~~s~s~~l~v~~~p~~P 453 (516)
|.|.|..|..+.++.|.|..+|.+|
T Consensus 202 C~a~n~~g~~~~~~~l~V~~~p~~p 226 (231)
T 3ojm_B 202 CKVSNYIGQANQSAWLTVLPKQQAP 226 (231)
T ss_dssp EEEEETTEEEEEEEEEEEECCC---
T ss_pred EEEEeccceEeeEEEEEEecCCCCC
Confidence 9999999999999999999998887
|
| >3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.1e-17 Score=151.49 Aligned_cols=164 Identities=19% Similarity=0.203 Sum_probs=123.9
Q ss_pred ccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEeecC--CeeEE
Q psy7039 121 LNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTTK--SETVL 198 (516)
Q Consensus 121 ~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~--~~~~l 198 (516)
+..+.+.+|+.+.|.|.+.. +.|.+.++|++++..+..+.++.+.... +..+|
T Consensus 9 ~~~~~v~eg~~v~l~c~~~~-------------------------~~P~p~i~W~kng~~l~~~~~~~~~~~~~~g~~~L 63 (207)
T 3rbs_A 9 ELAVEILEKGQVRFWMQAEK-------------------------LSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEM 63 (207)
T ss_dssp EEEEEECGGGCEEEEEECSC-------------------------CCSCCEEEEEETTEEECSSSSCEEEECTTTCEEEE
T ss_pred CCceEEEeCCeEEEEEEEec-------------------------CCCCCEEEEEECCEECccCCCEEEEEeCCCCEEEE
Confidence 44688999999999999871 4799999999999999888777776544 55689
Q ss_pred EeccCCCCCCeeEEEEEEcCCCceEEEEEee------------------------ceee---eeccccCCceEEEEEEEE
Q psy7039 199 DIPFCSRSDTGHYSLTLENNLGTATASAHVT------------------------GTEF---TDNNVHEGKAYEYRVSAV 251 (516)
Q Consensus 199 ~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~~------------------------~~~~---~~~~l~~g~~~~~~~~~~ 251 (516)
.|.+++.+|+|.|+|.+.| |.......+. ...| ....+.+|....|.|.+
T Consensus 64 ~I~~v~~~D~G~Y~C~a~N--g~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~v~~g~~v~l~C~v- 140 (207)
T 3rbs_A 64 FMEKLQDEDEGTYTFQLQD--GKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEVTGECNVLLKCKV- 140 (207)
T ss_dssp EESCCCGGGCEEEEEEEEE--TTEEEEEEEEECTHHHHHHHHHHHHHHHHHHHHTSSEEEEEEEEEEETTTEEEEEEEE-
T ss_pred EECCCChhhCEEEEEEEEC--CCeEEEEEEEEEccchhhhcccccccccccccCCCCceEecCCcEEcCCCcEEEEEEE-
Confidence 9999999999999999998 4433222210 1111 12356789999999998
Q ss_pred ccCCC-CCceecccccccc---eEEEEEecceeeEEEccCCCCCceEEEEEEEecCCCcceeEEEEE
Q psy7039 252 NAAGT-EKPKISLDALIGK---RIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVV 314 (516)
Q Consensus 252 ~~~g~-p~p~i~W~~~~~~---~~~~~~~~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~~~~l~v 314 (516)
.|. |.|.+.|.+.... ............|.|.++..+|+|.|+|.|.|..|....++.|..
T Consensus 141 --~g~~P~p~i~W~k~g~~l~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~~ 205 (207)
T 3rbs_A 141 --ANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVD 205 (207)
T ss_dssp --ESCCTTCEEEEEETTEEECCCCCCCCSSEEEEEEETTCCGGGCEEEEEEEEETTEEEEEEEEECC
T ss_pred --eCCCCCCEEEEEECCEECCCCCceEcCCCEEEEEECCCCcccCEEEEEEEEcCCCEEEEEEEEec
Confidence 787 8999999652110 001112334457999999999999999999999999888877754
|
| >2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=4.4e-17 Score=144.84 Aligned_cols=80 Identities=25% Similarity=0.410 Sum_probs=68.2
Q ss_pred EEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEE
Q psy7039 365 MTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKV 444 (516)
Q Consensus 365 ~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l 444 (516)
..+..|+.+.|.|.+.|.|.+.+.|++++..+....++.... ....|.|.++.. .|.|.|+|.|.|..|....++.|
T Consensus 108 ~~~~~g~~v~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~--~~~~L~i~~~~~-~d~G~Y~C~a~n~~g~~~~~~~l 184 (189)
T 2v5t_A 108 ATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKG--SNTELTVRNIIN-SDGGPYVCRATNKAGEDEKQAFL 184 (189)
T ss_dssp EETTSCCCEEEECEEEEESCCEEEEEETTEECCCSSSEEEET--TTTEEEECSCCG-GGCEEEEEEEEETTEEEEEEEEE
T ss_pred ccccCCCcEEEEEEEccCCCCeEEEEECCEECcCCCcEEEec--CCCEEEEcCCCh-hhCeeEEEEEEeCCCceeEEEEE
Confidence 345678999999999999999999999999887777666543 334799999999 99999999999999998888888
Q ss_pred EEe
Q psy7039 445 YVV 447 (516)
Q Consensus 445 ~v~ 447 (516)
.|.
T Consensus 185 ~V~ 187 (189)
T 2v5t_A 185 QVF 187 (189)
T ss_dssp EEE
T ss_pred EEE
Confidence 775
|
| >2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.3e-16 Score=142.81 Aligned_cols=75 Identities=19% Similarity=0.320 Sum_probs=62.6
Q ss_pred cEEEEcCCeEEEEEEEeeecCC-ceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCcee-EE
Q psy7039 364 DMTVLAGEEFTITVPFSGRPKP-TPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDS-AS 441 (516)
Q Consensus 364 ~~~v~~g~~~~l~C~~~g~p~~-~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s-~s 441 (516)
...+..|+.+.|.|.+.|.|.+ .+.|++++..+...... .....|.|.++ .|+|.|+|.|.|..|... .+
T Consensus 115 ~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~~~~~~~-----~~~~~L~i~~~---~d~G~Y~C~a~N~~g~~~s~~ 186 (195)
T 2c5d_C 115 DRTVAANTPFNLSCQAQGPPEPVDLLWLQDAVPLATAPGH-----GPQRSLHVPGL---NKTSSFSCEAHNAKGVTTSRT 186 (195)
T ss_dssp CEEECTTCCEEEEEEEECSSCCCEEEEEESSCBSSSSTTS-----SCCEEEEECCC---SSCEEEEEEEEETTEEEECCC
T ss_pred cEEEcCCCEEEEEeECCCCCCCCEEEEEECCEeccCCCCc-----CCCCeEEEccc---ccCceEEEEEEcCCCceEEEE
Confidence 3567889999999999999999 99999999887654433 34467999988 468999999999999874 78
Q ss_pred EEEEE
Q psy7039 442 CKVYV 446 (516)
Q Consensus 442 ~~l~v 446 (516)
+.|.|
T Consensus 187 ~~l~V 191 (195)
T 2c5d_C 187 ATITV 191 (195)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 88888
|
| >1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R | Back alignment and structure |
|---|
Probab=99.74 E-value=4.7e-17 Score=157.36 Aligned_cols=210 Identities=11% Similarity=0.017 Sum_probs=147.5
Q ss_pred CcEEEeCCCcCCCeEEEEEEEecCCCCCCCCCCCcceEeccCCCCCcccc--CcccceEEecCCeEEEEEee------ee
Q psy7039 69 ETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAPRIDR--STLNDVKIKAGQSFSFDVKE------FR 140 (516)
Q Consensus 69 ~~~~~i~~l~~~~~y~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~p~~~~--~~~~~~~v~~g~~~~l~C~~------~~ 140 (516)
...|.|.+++..|.|.|+|.|.|..|.... ...+.. ...+|.+.. .......+..|+.+.|.|.+ .
T Consensus 61 ~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~---~~~v~v--~~~~p~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~- 134 (315)
T 1itb_B 61 KEKLWFVPAKVEDSGHYYCVVRNSSYCLRI---KISAKF--VENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNE- 134 (315)
T ss_dssp SSBEECTTCCGGGCSCCEECCCSSSCCCCE---ECCCEE--ECCCTTSSSCGGGEEEEEEETTSCEEEECSSCTTTCTT-
T ss_pred CCeEEECCCChhhCEEEEEEEeCCceEEEE---EEEEEE--eCCCCCcccccccccceEEecCCCeEEEEecccccccC-
Confidence 458999999999999999999987664331 111211 113444321 12234668899999999998 6
Q ss_pred ccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEeecCCeeEEEeccCCCCCCeeEEEEEE-cCC
Q psy7039 141 ELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLE-NNL 219 (516)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~-~~~ 219 (516)
+.|.+.+.|++++..+...... +.. ....|.|.+++.+|+|.|+|.+. |..
T Consensus 135 -------------------------g~p~~~i~W~k~~~~l~~~~~~-~~~--~~~~L~i~~v~~~d~G~Y~C~a~~n~~ 186 (315)
T 1itb_B 135 -------------------------NNELPKLQWYKDCKPLLLDNIH-FSG--VKDRLIVMNVAEKHRGNYTCHASYTYL 186 (315)
T ss_dssp -------------------------TTCCCCCEEEETTEECCCCSSS-EEE--ETTEEEESSCCGGGCEEEEEEEEEEET
T ss_pred -------------------------CCCCCEEEEEECCEECCCccce-Eee--cCceEEEEeceehhCcEEEEEEEcCCC
Confidence 8899999999999988653222 111 23489999999999999999999 777
Q ss_pred CceEE---EEEeec--------eeee-----eccccCCceEEEEEEEEccCCCCCceecccccc-----cce----EEEE
Q psy7039 220 GTATA---SAHVTG--------TEFT-----DNNVHEGKAYEYRVSAVNAAGTEKPKISLDALI-----GKR----IKEF 274 (516)
Q Consensus 220 g~~~~---~~~~~~--------~~~~-----~~~l~~g~~~~~~~~~~~~~g~p~p~i~W~~~~-----~~~----~~~~ 274 (516)
|.... .+.+.. ..+. ...+..|+.+.|.|.+ .|.|.|.+.|.+.. ... ....
T Consensus 187 g~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~g~~v~l~C~~---~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~ 263 (315)
T 1itb_B 187 GKQYPITRVIEFITLEENKPTRPVIVSPANETMEVDLGSQIQLICNV---TGQLSDIAYWKWNGSVIDEDDPVLGEDYYS 263 (315)
T ss_dssp TEEEEEEEEEEEEEECCCCCCCCEECSCCSEEEECCSSSCEEEEEEE---EECTTSEEEEEETTEECCTTCSSEEEEEEE
T ss_pred CcEEEEEEEEEEEEecCCCCCCCEEecCCCCcEEEeCCCcEEEEEEE---ecCCCCeeEEEECCEECCccccccccccee
Confidence 76532 221111 1111 1356789999999999 78899999996511 110 0111
Q ss_pred Ee--------cceeeEEEccCCCCC-ceEEEEEEEecCCCcceeEEEEEe
Q psy7039 275 VT--------STTASLNIKNSVRKD-SGIYKIEAKNDYGIDMADIEVVVV 315 (516)
Q Consensus 275 ~~--------~~~~~l~i~~l~~~d-~g~y~c~a~n~~g~~~~~~~l~v~ 315 (516)
.. .....|.|.++..+| +|.|+|.|.|..|.....+.|.|.
T Consensus 264 ~~~~~~~~~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~~G~~~~~~~l~v~ 313 (315)
T 1itb_B 264 VENPANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQLIYP 313 (315)
T ss_dssp ECCSSCGGGEEEEEEEEESSCCGGGGTSCEEEEEECTTCCEEEEEEEECC
T ss_pred eeccCCCceeEEEEEEEEeecCHHHcCCceEEEEecCCCceeEEEEEEec
Confidence 11 124589999999999 999999999999999888888764
|
| >1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.74 E-value=1.1e-16 Score=141.52 Aligned_cols=73 Identities=19% Similarity=0.343 Sum_probs=59.7
Q ss_pred cEEEEcCCeEEEEEEEeeecCC-ceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCcee-EE
Q psy7039 364 DMTVLAGEEFTITVPFSGRPKP-TPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDS-AS 441 (516)
Q Consensus 364 ~~~v~~g~~~~l~C~~~g~p~~-~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s-~s 441 (516)
...+..|+.+.|.|.+.|.|.+ .+.|++++..+..... ....|.|.++ .|+|.|+|.|.|..|... .+
T Consensus 107 ~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~~~~~~-------~~~~L~i~~~---~d~G~Y~C~a~N~~g~~~s~~ 176 (182)
T 1rhf_A 107 DLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPAP-------SPSVLNVTGV---TQSTMFSCEAHNLKGLASSRT 176 (182)
T ss_dssp CEEECTTCCEEEEEEEECSSSCCEEEEEETTEECSCSEE-------SSEEEEECCC---SSCEEEEEEEEETTEEEECCC
T ss_pred ceEecCCCEEEEEeEecCCCCCCEEEEEcCCeECCCCCC-------CceEEEEecc---ccCeEEEEEEECCCCCcccce
Confidence 3567899999999999999999 9999999987754321 4467899887 578999999999999874 47
Q ss_pred EEEEE
Q psy7039 442 CKVYV 446 (516)
Q Consensus 442 ~~l~v 446 (516)
+.|.|
T Consensus 177 ~~l~V 181 (182)
T 1rhf_A 177 ATVHL 181 (182)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 77766
|
| >3r8q_A Fibronectin; heparin, FNIII, heparin binding, cell adhesion; 2.40A {Homo sapiens} PDB: 1fnh_A | Back alignment and structure |
|---|
Probab=99.74 E-value=8.1e-16 Score=146.95 Aligned_cols=84 Identities=26% Similarity=0.388 Sum_probs=69.1
Q ss_pred CCCCCCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCC--CeEEeEEeecCCcEEEeCCCcCCCeEEEEEE
Q psy7039 11 FDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTG--NWEKAVVVPAGETSCTVPGLIEGETYQFQVR 88 (516)
Q Consensus 11 ~~~p~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~--~~~~~~~~~~~~~~~~i~~l~~~~~y~~~~~ 88 (516)
..+|.+|.+|++..++++++.|+|.+|. +.+.+|.|+|+..+. .|... ....+.+++.|.+|.+++.|.|+|+
T Consensus 18 ~~~p~~P~~l~~~~~~~~sv~l~W~~p~----~~~~~Y~v~~~~~~~~~~~~~~-~~~~~~~~~~i~~L~p~t~Y~~~V~ 92 (290)
T 3r8q_A 18 GPAIPAPTDLKFTQVTPTSLSAQWTPPN----VQLTGYRVRVTPKEKTGPMKEI-NLAPDSSSVVVSGLMVATKYEVSVY 92 (290)
T ss_dssp --CCCCCEEEEEEEECSSCEEEEEECCS----SCCCEEEEEEEESSSSSCCEEE-EECTTCCEEEECSCCSSCEEEEEEE
T ss_pred CCCCCCCCceEEEECCCCEEEEEEeCCC----CCeeEEEEEEEeCCCCCceEEE-EcCCCccEEEeCCCCCCCEEEEEEE
Confidence 3467899999999999999999999972 368999999998653 45444 3445788999999999999999999
Q ss_pred EecCCCCCCCC
Q psy7039 89 AVNAAGPGEAS 99 (516)
Q Consensus 89 a~n~~g~~~~s 99 (516)
|.|..|.+.++
T Consensus 93 a~~~~g~s~~s 103 (290)
T 3r8q_A 93 ALKDTLTSRPA 103 (290)
T ss_dssp EEETTEECCCE
T ss_pred EEeCCCCCCCc
Confidence 99988877654
|
| >4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=1.5e-17 Score=149.79 Aligned_cols=160 Identities=12% Similarity=0.042 Sum_probs=114.0
Q ss_pred ceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeec-----------------cCC
Q psy7039 123 DVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQ-----------------IGG 185 (516)
Q Consensus 123 ~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~-----------------~~~ 185 (516)
.+.+..|+.+.|.|.+.. +.+.|.+.+.|++++.... ...
T Consensus 2 ~Vta~~Ge~v~L~C~~~~-----------------------v~~~p~~~V~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~ 58 (203)
T 4fa8_A 2 AVTAFLGERVTLTSYWRR-----------------------VSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRG 58 (203)
T ss_dssp CCEEETTCCEEEEEECSS-----------------------TTCSTTSEEEEEEEETTTEEEEEEEEETTEEEECGGGBT
T ss_pred CeEEEcCCCEEEEeeeec-----------------------cCCCCCcEEEEEEcCCCcceEEEEecCCceEEeeccccc
Confidence 477899999999996430 0056777888887653211 113
Q ss_pred ceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEEeecee-------eeeccccCCceEEEEEEEEccCCCCC
Q psy7039 186 RADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVTGTE-------FTDNNVHEGKAYEYRVSAVNAAGTEK 258 (516)
Q Consensus 186 ~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~~~~~-------~~~~~l~~g~~~~~~~~~~~~~g~p~ 258 (516)
++.+........|.|.+++.+|+|.|+|.+.|..|.......+.+.. .....+.+|....|.|.+ .|.|.
T Consensus 59 ~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~p~~~~~~~~~~~v~~g~~~~l~C~~---~G~P~ 135 (203)
T 4fa8_A 59 FFDIHRSANTFFLVVTAANISHDGNYLCRMKLGETEVTKQEHLSVVKPLTLSVHSERSQFPDFSVLTVTCTV---NAFPH 135 (203)
T ss_dssp TEEEEEETTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEEEEEEEEEEEEECCSSCSCCEEEEEEE---EEESC
T ss_pred eEEEEEcCCEEEEEEccCCHHHCeEEEEEEEcCCCcEEEEEEEEecCCceeeecceeEEEcCCCEEEEEEEc---CCCCC
Confidence 34445556678999999999999999999999988877665543322 234567789999999998 78999
Q ss_pred ceeccccccc---------ceEEEEEecceeeEEEccCCCCCceEEEEEEEecCCCcce
Q psy7039 259 PKISLDALIG---------KRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMA 308 (516)
Q Consensus 259 p~i~W~~~~~---------~~~~~~~~~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~ 308 (516)
|.++|.+..+ .++.+...+....+.|.++..+|+|.|+|.|.|..|.+..
T Consensus 136 P~v~W~~~~~~~~~~~~~~~r~~~~~~g~l~il~i~~v~~~D~G~YtC~A~N~~G~a~~ 194 (203)
T 4fa8_A 136 PHVQWLMPEGVEPAPTAANGGVMKEKDGSLSVAVDLSLPKPWHLPVTCVGKNDKEEAHG 194 (203)
T ss_dssp CEEEECCC------------CCEECTTSCEEEEEEEEECSSCCCCEEEEEESSSCEEEE
T ss_pred CEEEEEECCeeecCcccccceEEEeCCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEE
Confidence 9999965322 1122222223344566799999999999999999998764
|
| >3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.74 E-value=2.5e-16 Score=147.79 Aligned_cols=221 Identities=14% Similarity=0.112 Sum_probs=147.2
Q ss_pred eCCeeEEEecCCCCCCCCceeceEEEEEeCCCCeEEeEEeecCCcEEEeCCCcCCCeEEEEEEEecCCCCCCCCCCCcce
Q psy7039 26 DKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVVVPAGETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPI 105 (516)
Q Consensus 26 ~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~~~a~n~~g~~~~s~~~~~~ 105 (516)
..+.+.|.+...... .+ ..+.|...+. ........|.|.+++..|.|.|+|.|.|..+.. ...+
T Consensus 15 ~G~~v~l~C~~~~~~--~~---~~~~W~~~g~------~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~s~-----~~~l 78 (262)
T 3rjd_A 15 QEETVTLHCEVLHLP--GS---SSTQWFLNGT------ATQTSTPSYRITSASVNDSGEYRCQRGLSGRSD-----PIQL 78 (262)
T ss_dssp TTCCEEEEEECSSCC--CT---TCEEEEETTE------ECSCCSSEEEESSCCGGGCEEEEEEESSSCCCC-----CEEE
T ss_pred CCCeEEEEEECCCCC--CC---ceEEEEECCE------EeeccCCeEEEecCCcccCeEEEEEEecCCccc-----cEEE
Confidence 566778888763211 11 1233444332 111246789999999999999999998754321 2223
Q ss_pred EeccCCCCCccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCC
Q psy7039 106 VAKPKNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGG 185 (516)
Q Consensus 106 ~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~ 185 (516)
.+.. +| +. ..+....+.+|+.+.|.|.+.+ +.|.+.+.|++++..+...
T Consensus 79 ~v~~---~~-~~-~~~~~~~~~~g~~v~l~C~~~~-------------------------~~p~~~v~W~~~g~~~~~~- 127 (262)
T 3rjd_A 79 EIHR---GW-LL-LQVSSRVFTEGEPLALRCHAWK-------------------------DKLVYNVLYYRNGKAFKFF- 127 (262)
T ss_dssp EEEC---SS-EE-EEESCSEEETTSCEEEEEEEGG-------------------------GCCCEEEEEEETTEEEEEE-
T ss_pred EEec---cc-eE-ecCCCeEEecCCeEEEEEEccC-------------------------CCCCceEEEEECCcccccc-
Confidence 3321 22 22 3344567889999999999941 7788999999998877421
Q ss_pred ceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEEeecee------e---eeccccCCceEEEEEEEEccCCC
Q psy7039 186 RADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVTGTE------F---TDNNVHEGKAYEYRVSAVNAAGT 256 (516)
Q Consensus 186 ~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~~~~~------~---~~~~l~~g~~~~~~~~~~~~~g~ 256 (516)
.....|.|.+++.+|+|.|+|.+.|..+.......+.+.. + ....+.+|+.+.+.|.+ .|.
T Consensus 128 -------~~~~~l~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~l~V~~~~~~p~~~~~~~~~~~~g~~~~l~C~~---~~~ 197 (262)
T 3rjd_A 128 -------HWNSNLTILKTNISHNGTYHCSGMGKHRYTSAGISVTVKELFPAPVLNASVTSPLLEGNLVTLSCET---KLL 197 (262)
T ss_dssp -------EECCCEEESSCCGGGCEEEEEEEESSSEEEEECEEEEEECSSCCCEEEESSCSSEETTCCEEEEEEC---CCC
T ss_pred -------CCCCeEEEEECChhhCEEEEEEEeCCCCccccceEEEeccCCCCCeEeecCceeecCCCeEEEEeEc---ccC
Confidence 1245799999999999999999999886665544333221 1 12246789999999998 777
Q ss_pred CC-ceec----ccccccceEEEEEecceeeEEEccCCCCCceEEEEEEEecCCCc
Q psy7039 257 EK-PKIS----LDALIGKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGID 306 (516)
Q Consensus 257 p~-p~i~----W~~~~~~~~~~~~~~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~ 306 (516)
|. |.+. |.+. +. .+........|.|.++..+|+|.|+|.|.|..|..
T Consensus 198 p~~p~~~~~~~w~~~-~~--~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~G~~ 249 (262)
T 3rjd_A 198 LQRPGLQLYFSFYMG-SK--TLRGRNTSSEYQILTARREDSGLYWCEAATEDGNV 249 (262)
T ss_dssp CC-----EEEEEEET-TE--EEEEEESCCEEEESSCCGGGCEEEEEEEEETTSSC
T ss_pred CCCCCccEEEEEEeC-Cc--EecccCCCceEEEEEechhhCeEEEEEEEcccCce
Confidence 65 6544 4321 11 12223456789999999999999999999999975
|
| >3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.74 E-value=8.3e-17 Score=144.49 Aligned_cols=186 Identities=20% Similarity=0.263 Sum_probs=129.1
Q ss_pred CcccceEEecCCeEEEEEe-eeeccccccCccccccccccCccceeecCcCc-eeeEEeeCCeeeccCCceEEeecCCee
Q psy7039 119 STLNDVKIKAGQSFSFDVK-EFRELSYTKSPLRALGVRANSTKGWVKLSEPF-LNHGWSINGQVCQIGGRADVQTTKSET 196 (516)
Q Consensus 119 ~~~~~~~v~~g~~~~l~C~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~i~W~~~~~~~~~~~~~~~~~~~~~~ 196 (516)
..+..+.+.+|+.+.|.|. +. +.|. +.+.|++++..+...............
T Consensus 13 ~~~~~~~v~~G~~v~L~C~~~~--------------------------~~p~~~~v~W~~~~~~~~~~~~~~~~~~~~~~ 66 (201)
T 3s97_C 13 EERPEVRVKEGKGMVLLCDPPY--------------------------HFPDDLSYRWLLNEFPVFITMDKRRFVSQTNG 66 (201)
T ss_dssp SCCCCEEEETTCCEEECCCCCS--------------------------EESSCCEEEEEESSTTCBCCCSSSEEECTTTC
T ss_pred CCCceEEEECCCCEEEeccccc--------------------------cCCCceEEEEEECCceeeeeeCCCeEEEcCCC
Confidence 5667789999999999999 77 7888 999999998777532222222234456
Q ss_pred EEEeccCCCCCCeeEEEEEEcCCCceEEEEEeeceeeeeccccCCceEEEEEEEEccCCCCCceecccccccceEEEEEe
Q psy7039 197 VLDIPFCSRSDTGHYSLTLENNLGTATASAHVTGTEFTDNNVHEGKAYEYRVSAVNAAGTEKPKISLDALIGKRIKEFVT 276 (516)
Q Consensus 197 ~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~g~p~p~i~W~~~~~~~~~~~~~ 276 (516)
.|.|.+++.+|+|.|+|.+.+..+...... ....+.+.. ...
T Consensus 67 ~L~i~~v~~~d~G~Y~C~~~~~~~~~~~~~---------------~~~~~~~~~---~~~-------------------- 108 (201)
T 3s97_C 67 NLYIANVEASDKGNYSCFVSSPSITKSVFS---------------KFIPLIPIP---ERT-------------------- 108 (201)
T ss_dssp CEEESSCCGGGCEEEEEEEEEGGGTEEEEC---------------CCEEEEEEC---CSS--------------------
T ss_pred eEEECcCCcccCeEEEEEEEecCCCcchhh---------------cccceeecc---ccc--------------------
Confidence 799999999999999999987554332110 000001100 000
Q ss_pred cceeeEEEccCCCCCceEEEEEEEecCCCcceeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeecccc
Q psy7039 277 STTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKI 356 (516)
Q Consensus 277 ~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~ 356 (516)
.......+.+
T Consensus 109 ----------------------------~~~~~p~~~~------------------------------------------ 118 (201)
T 3s97_C 109 ----------------------------TKPYPADIVV------------------------------------------ 118 (201)
T ss_dssp ----------------------------CCCEEEEEEE------------------------------------------
T ss_pred ----------------------------cCCCCCceEe------------------------------------------
Confidence 0000000000
Q ss_pred ccccccccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCC
Q psy7039 357 TSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVG 436 (516)
Q Consensus 357 ~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G 436 (516)
......+..|+.+.|.|.+.|.|.+.+.|++++..+.... .... ....|.|.++.. .|.|.|+|.|.|..|
T Consensus 119 ----~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~--~~~~--~~~~L~i~~v~~-~d~G~Y~C~a~n~~g 189 (201)
T 3s97_C 119 ----QFKDVYALMGQNVTLECFALGNPVPDIRWRKVLEPMPSTA--EIST--SGAVLKIFNIQL-EDEGIYECEAENIRG 189 (201)
T ss_dssp ----ECCCEEEETTCCEEEEEEEEEESCCEEEEEETTBCCCTTC--EEET--TTTEEEECSCCG-GGCEEEEEEEEETTE
T ss_pred ----cCCceEEecCCcEEEEEEccCCCCCceEEEeCCCcCCCce--eecC--CCCEEEEccCCh-hhCEEEEEEEEecCC
Confidence 0123567899999999999999999999999998765432 2222 234799999999 999999999999999
Q ss_pred ceeEEEEEEEe
Q psy7039 437 SDSASCKVYVV 447 (516)
Q Consensus 437 ~~s~s~~l~v~ 447 (516)
....++.|.|.
T Consensus 190 ~~~~~~~l~V~ 200 (201)
T 3s97_C 190 KDKHQARIYVQ 200 (201)
T ss_dssp EEEEEEEEEEE
T ss_pred ceeeeEEEEEe
Confidence 99888888875
|
| >3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} | Back alignment and structure |
|---|
Probab=99.74 E-value=4.9e-17 Score=158.49 Aligned_cols=251 Identities=14% Similarity=0.069 Sum_probs=162.0
Q ss_pred eeeCCeeEEEecCCCCCCCC---ceeceEEEEEeCCCCeEEeEEeecCCcEEEeCCCcCCCeE-EEEEEEecCCCCCCCC
Q psy7039 24 DWDKDHVDLQWTPPISDGGS---PITGYVVEMKDKTGNWEKAVVVPAGETSCTVPGLIEGETY-QFQVRAVNAAGPGEAS 99 (516)
Q Consensus 24 ~~~~~~v~l~W~~p~~~~~~---~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y-~~~~~a~n~~g~~~~s 99 (516)
......+.|.+......... .--...|.|...+......... .....|.|.+++..|.| .|+|.|.|..|.....
T Consensus 41 v~eG~~v~L~C~~~~~~~~~~~~~~p~~~v~W~k~~~~~~~~~~~-~~~~~L~i~~v~~~D~Gs~Y~C~a~n~~g~~~~~ 119 (329)
T 3oq3_B 41 AALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRRPLNRR-VKNGDLWIANYTSNDSHRRYLCTVTTKNGDCVQG 119 (329)
T ss_dssp ECTTSCEEECCHHHHCTTTGGGSCCTTCEEEEEECSSSCEECSTT-EETTEEEESSCCGGGGGCCEEEEEECTTSCEEEE
T ss_pred EECCCeEEEEccCCCCccccccccCCCCeeEEEECCCCccccCce-eecceEEEcCCChHhCCCcEEEEEEeCCCceeeE
Confidence 34566777777652100000 0012445565554421111001 23678999999999999 9999999987652211
Q ss_pred CCCcceEeccCCCCCccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcC-ceeeEEeeCC
Q psy7039 100 KPTAPIVAKPKNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEP-FLNHGWSING 178 (516)
Q Consensus 100 ~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~i~W~~~~ 178 (516)
....... .+|.+. .......+.+|+.+.|.|.+. +.| .+.+.|++++
T Consensus 120 --~~~~v~~---~~p~~~-~~~~~~~~~~G~~v~L~C~~~--------------------------g~p~~~~i~W~k~~ 167 (329)
T 3oq3_B 120 --IVRSHIR---KPPSCI-PETYELGTHDKYGIDLYCGIL--------------------------YAKHYNNITWYKNN 167 (329)
T ss_dssp --EEEEEEC---CCCSCE-EEEEETTSSTTTCEEEECCCC--------------------------SCCCCCEEEEEETT
T ss_pred --EEEEEEc---CCCcEe-ccccceEEeCCCcEEEEeccC--------------------------CCCCCceEEEEECC
Confidence 1111111 234433 333334467899999999999 888 8999999999
Q ss_pred eeecc-CCceEEeecCCeeEEEeccCCCCCCeeEEEEEEcC--CCceEEE----E--Eeece--------eeeeccccCC
Q psy7039 179 QVCQI-GGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENN--LGTATAS----A--HVTGT--------EFTDNNVHEG 241 (516)
Q Consensus 179 ~~~~~-~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~--~g~~~~~----~--~~~~~--------~~~~~~l~~g 241 (516)
..+.. ..++... ...|.|.+++.+|+|.|+|.+.|. .|..... . .+... ......+..|
T Consensus 168 ~~l~~~~~~~~~~----~~~L~I~~v~~~D~G~Y~C~a~n~~~~g~~~~~~s~~~~l~V~~~~~~~~~~~~~~~~~v~~G 243 (329)
T 3oq3_B 168 QELIIDGTKYSQS----GQNLIIHNPELEDSGRYDCYVHYDDVRIKNDIVVSRCKILTVIPSQDHRFKLILDPKINVTIG 243 (329)
T ss_dssp EECCCSSSSEEEE----TTEEEECSCCGGGCEEEEEEEEECCTTSSSCEEEEEEEEEEEECCCCCCEEEECCSEEEECTT
T ss_pred ccCCCCCceEecC----CCEEEEeecChhhCEEEEEEEEecccCCCceeEEEeeEEEEEECCCCCCCceecCCeeEEecC
Confidence 98853 3333332 368999999999999999999986 5443222 2 22111 1122456789
Q ss_pred ceEEEEEEEEccCCCC---Cc-eeccccccc------ceEEEE--Ee--cceeeEEEccCCCCCce-EEEEEEEecCCCc
Q psy7039 242 KAYEYRVSAVNAAGTE---KP-KISLDALIG------KRIKEF--VT--STTASLNIKNSVRKDSG-IYKIEAKNDYGID 306 (516)
Q Consensus 242 ~~~~~~~~~~~~~g~p---~p-~i~W~~~~~------~~~~~~--~~--~~~~~l~i~~l~~~d~g-~y~c~a~n~~g~~ 306 (516)
+.+.+.|.+ .|.| .| .+.|.+... ...... .. .....|.|.++..+|.| .|+|.|.|..|..
T Consensus 244 ~~~~l~C~~---~g~p~~~~~i~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~~Y~C~a~N~~G~~ 320 (329)
T 3oq3_B 244 EPANITCTA---VSTSLLVDDVLIDWENPSGWIIGLDFGVYSILTSSGGITEATLYFENVTEEYIGNTYTCRGHNYYFDK 320 (329)
T ss_dssp SCEEEEEEE---EETTCCTTCCEEEEECTTSCBCCBCSSEEEEEEEETTEEEEEEEESSCCGGGTTCEEEEEEECSSCEE
T ss_pred CCEEEEEEE---EECCCCCCCcEEEEEECCeeeeccCCceeeeecccCceeEeEEEEEeccHHHCCCcEEEEEEecCCce
Confidence 999999999 5655 77 789965211 111110 11 14678999999999999 9999999999998
Q ss_pred ceeEEEEE
Q psy7039 307 MADIEVVV 314 (516)
Q Consensus 307 ~~~~~l~v 314 (516)
..++.|.|
T Consensus 321 ~~~~~l~v 328 (329)
T 3oq3_B 321 TLTTTVVL 328 (329)
T ss_dssp EEEEEEEE
T ss_pred EEEEEEEe
Confidence 88777765
|
| >1tdq_A Tenascin-R; extracellular matrix, lecticans, tenascins, protein-protein interactions, C-type lectin domain; 2.60A {Rattus norvegicus} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 | Back alignment and structure |
|---|
Probab=99.74 E-value=4.3e-15 Score=141.28 Aligned_cols=82 Identities=17% Similarity=0.272 Sum_probs=67.4
Q ss_pred CCCCCCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCC--CCeEEeEEeecCCcEEEeCCCcCCCeEEEEEE
Q psy7039 11 FDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKT--GNWEKAVVVPAGETSCTVPGLIEGETYQFQVR 88 (516)
Q Consensus 11 ~~~p~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~--~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~~~ 88 (516)
..+|++|.+|++..++++++.|+|.+|. +.+.+|.|+|+... +.|. .........++.|.+|.+++.|.|+|+
T Consensus 12 ~~~p~~P~~l~~~~~~~~sv~l~W~~~~----~~~~~Y~v~~~~~~~~~~~~-~~~~~~~~~~~~i~~L~p~t~Y~~~V~ 86 (283)
T 1tdq_A 12 IPVIDGPTQILVRDVSDTVAFVEWTPPR----AKVDFILLKYGLVGGEGGKT-TFRLQPPLSQYSVQALRPGSRYEVSIS 86 (283)
T ss_dssp CCSSCCCEEEEEEEECSSCEEEEEECCS----SCCSEEEEEEEESSSSCCCE-EEEECTTCSEEEECSCCTTCEEEEEEE
T ss_pred ccCCCCCcEEEEEecCCCeEEEEEECCC----CceeEEEEEEEEecCCCCcE-EEEeCCCCCEEEecCCCCCCEEEEEEE
Confidence 3578999999999999999999999974 46899999997643 3553 333456789999999999999999999
Q ss_pred EecCCCCCC
Q psy7039 89 AVNAAGPGE 97 (516)
Q Consensus 89 a~n~~g~~~ 97 (516)
|.|..|.+.
T Consensus 87 a~~~~g~s~ 95 (283)
T 1tdq_A 87 AVRGTNESD 95 (283)
T ss_dssp EEETTEECC
T ss_pred EECCCCCCC
Confidence 999877654
|
| >3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.8e-17 Score=150.97 Aligned_cols=194 Identities=19% Similarity=0.257 Sum_probs=130.3
Q ss_pred CCCCccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccC--CceE
Q psy7039 111 NLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIG--GRAD 188 (516)
Q Consensus 111 ~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~--~~~~ 188 (516)
..+|.|. .+..+.+.+|+.+.|.|.+. +.|.+.+.|++++..+... .++.
T Consensus 17 ~~~P~~~--~p~~~~~~~G~~v~l~C~~~--------------------------g~p~p~i~W~~~g~~l~~~~~~~~~ 68 (215)
T 3mtr_A 17 MYAPKLQ--GPVAVYTWEGNQVNITCEVF--------------------------AYPSATISWFRDGQLLPSSNYSNIK 68 (215)
T ss_dssp CEEEEEE--CCSEEEECTTCCEEEEEEEE--------------------------EESCCEEEEEETTEESSCSSSCSEE
T ss_pred ecCCccc--CCceEEEECCCCEEEEEEEe--------------------------ecCCCEEEEEECCeECCCCCCccEE
Confidence 3456663 44558899999999999999 9999999999999877543 1222
Q ss_pred EeecCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEEeeceeeeeccccCCceEEEEEEEEccCCCCCceeccccccc
Q psy7039 189 VQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVTGTEFTDNNVHEGKAYEYRVSAVNAAGTEKPKISLDALIG 268 (516)
Q Consensus 189 ~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~g~p~p~i~W~~~~~ 268 (516)
+...+.
T Consensus 69 ~~~~~~-------------------------------------------------------------------------- 74 (215)
T 3mtr_A 69 IYNTPS-------------------------------------------------------------------------- 74 (215)
T ss_dssp EEEETT--------------------------------------------------------------------------
T ss_pred EecCCC--------------------------------------------------------------------------
Confidence 222222
Q ss_pred ceEEEEEecceeeEEEccCCCCCceEEEEEEEecCCCcceeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCC
Q psy7039 269 KRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGT 348 (516)
Q Consensus 269 ~~~~~~~~~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~ 348 (516)
...|.|.++...|.|.|+|.|.|..|.....+.+.|...|.+|.. +.+ .....++.|+|.+|..+++.
T Consensus 75 ----------~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~P~~p~~-~~~-~~~~~~~~l~w~~p~~~~~~ 142 (215)
T 3mtr_A 75 ----------ASYLEVTPDSENDFGNYNCTAVNRIGQESLEFILVQADTPSSPSI-DQV-EPYSSTAQVQFDEPEATGGV 142 (215)
T ss_dssp ----------EEEEEECCCSGGGCEEEEEEEECSSCEEEEEEEEEECCCCCCCEE-EEE-EEETTEEEEEEECCSCCCSS
T ss_pred ----------eeEEEEecCChhhCeEEEEEEEECCCceEEEEEEEECCCCCCCcc-eEE-EEecceEEEEEecCCccCCC
Confidence 235666666666666666666666666666666666666665532 333 34567899999999888888
Q ss_pred ceeeccccccccccccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEE
Q psy7039 349 PITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYT 428 (516)
Q Consensus 349 ~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~ 428 (516)
+|.+| .+.|.+++........+..........|.|.++.+ .+.|.|+
T Consensus 143 pi~~y--------------------------------~v~~~~~~~~~w~~~~~~~~~~~~~~~l~i~~L~~-~~~y~~~ 189 (215)
T 3mtr_A 143 PILKY--------------------------------KAEWRAVGEEVWHSKWYDAKEASMEGIVTIVGLKP-ETTYAVR 189 (215)
T ss_dssp CEEEE--------------------------------EEEEEETTCCCCEEEEEEHHHHHHHTEEEEECCCT-TCEEEEE
T ss_pred ceEEE--------------------------------EEEEEECCCCcccccccccccccccccEEECCCCC-CCEEEEE
Confidence 88777 25666655321110000000001114799999999 9999999
Q ss_pred EEEEcCCCceeEEEEEEEecCCC
Q psy7039 429 IQLVNTVGSDSASCKVYVVDKPS 451 (516)
Q Consensus 429 c~a~n~~G~~s~s~~l~v~~~p~ 451 (516)
|.|.|..|.+..+..+.+.++|.
T Consensus 190 ~~A~N~~G~s~~S~~~~v~T~p~ 212 (215)
T 3mtr_A 190 LAALNGKGLGEISAASEFKTQPV 212 (215)
T ss_dssp EEEEESSCBCCCCCCEEEECCC-
T ss_pred EEEEeCCcccCcccceeeEeccc
Confidence 99999999988877777776553
|
| >1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C region, hinge region, immunoglobulin; HET: NAG FUL NDG BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 | Back alignment and structure |
|---|
Probab=99.74 E-value=4.1e-19 Score=180.15 Aligned_cols=264 Identities=12% Similarity=0.095 Sum_probs=158.1
Q ss_pred ccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCc--CceeeEEeeCC--eee---------------
Q psy7039 121 LNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSE--PFLNHGWSING--QVC--------------- 181 (516)
Q Consensus 121 ~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--p~~~i~W~~~~--~~~--------------- 181 (516)
+..+.+.+|+++.|.|.+. +. +.+.+.|+++. ..+
T Consensus 6 ~~~~~v~~G~~v~L~C~~~--------------------------~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~ 59 (434)
T 1igy_B 6 SGAELARPGASVKMSCKAS--------------------------GYTFTTYTIHWIKQRPGQGLEWIGYINPSSVYTNY 59 (434)
T ss_dssp CCCCEECTBCCEEECCEEC--------------------------SSCGGGCCCEEEEECTTCCEEEEEECCSSSCCCCC
T ss_pred CCCeEecCCCCEEEEEEcc--------------------------CCcccCceEEEEEECCCCCCEEEEEEccCCCceec
Confidence 4457889999999999998 54 25667787642 211
Q ss_pred --ccCCceEEeec--CCeeEEEeccCCCCCCeeEEEEEEcCCCceE--EEEEeec------eeee---eccccCCceEEE
Q psy7039 182 --QIGGRADVQTT--KSETVLDIPFCSRSDTGHYSLTLENNLGTAT--ASAHVTG------TEFT---DNNVHEGKAYEY 246 (516)
Q Consensus 182 --~~~~~~~~~~~--~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~--~~~~~~~------~~~~---~~~l~~g~~~~~ 246 (516)
....|+.+..+ +...+|.|.+++.+|+|.|.|.+.|..+... ..+.+.. ..+. ...+.+|..+.+
T Consensus 60 ~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~G~~v~L 139 (434)
T 1igy_B 60 NQRFKDKATLTRDRSSNTANIHLSSLTSDDSAVYYCVREGEVPYWGQGTTVTVSSAKTTPPSVYPLAPGSAAQTNSMVTL 139 (434)
T ss_dssp CGGGTTTEECCBCGGGCBBCEEECSBCGGGCSEECCCCSSSSCCCCCCEECEECCSCCBCCCEEEECCCCCCCCTTEEEE
T ss_pred CccccccEEEEEECCCCEEEEEECCCChHHCEEEEEEEEccccccCCceEEEEccCCCCCCeEEEcCCccccCCCCcEEE
Confidence 01245554432 3456899999999999999999988533221 1222211 0111 123468999999
Q ss_pred EEEEEccCCC-CCc-eecccccccce-EE----EEEe---cceeeEEEccCCCCCceEEEEEEEecCCCcceeEEEEEec
Q psy7039 247 RVSAVNAAGT-EKP-KISLDALIGKR-IK----EFVT---STTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVS 316 (516)
Q Consensus 247 ~~~~~~~~g~-p~p-~i~W~~~~~~~-~~----~~~~---~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~~~~l~v~~ 316 (516)
.|.+ .|. |.| .+.|.+..... .. .... .....|.|.++..+| |.|+|.|.|..|.......+.+..
T Consensus 140 ~C~~---~g~~P~p~~v~W~k~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-g~Y~C~a~n~~~~~~~~~~~~~~~ 215 (434)
T 1igy_B 140 GCLV---KGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSPRPS-ETVTCNVAHPASSTKVDKKIVPRD 215 (434)
T ss_dssp EEEE---EEEBSSCCEEEETTTTBCSSEEECCCEECSSCEEEEEEEEEETTTTTS-SCCEEEEECTTTTCCEEEECCCCC
T ss_pred EEEE---eeecCCCeEEEEeeCCcCCCeEecCceecCCcEEEEEEEEEcchhcCC-CcEEEEEEeCCCCccceeeccCCC
Confidence 9998 454 666 89997632210 00 0000 112468899999888 999999999988754443333221
Q ss_pred CCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeeec----CCceEEEEC
Q psy7039 317 KPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRP----KPTPIWTVN 392 (516)
Q Consensus 317 ~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p----~~~i~W~~~ 392 (516)
....... +.....-.+.+ .+|. ....+..|+.+.|.|.+.|.+ .+.|.|+++
T Consensus 216 ~~~~v~~---~~~~~~p~v~~--~~p~-------------------~~~~v~~G~~~~L~C~~~g~~p~P~~~~i~W~k~ 271 (434)
T 1igy_B 216 CGCKPCI---CTVPEVSSVFI--FPPK-------------------PKDTLLITVTPKVTCVVVDISKDDPEVQFSWFVD 271 (434)
T ss_dssp CCCCCCC---CCCSSSCCEEE--ECCC-------------------HHHHHSTTSCCEEEEEECCCCSSCCCCCBCBBSS
T ss_pred CCCcccc---CCCCcCcEEEE--eCCC-------------------hHHhcccCCCcEEEEEEeccccCCCCeEEEEEeC
Confidence 0000000 00000000000 0110 000167899999999999884 358999999
Q ss_pred CeecCCCCceEEE-EcC----CeEEEEEcCceecCCceEEEEEEEcCCCcee
Q psy7039 393 GDEVSPDGRIKFE-TSE----NQTIYRNKSAKRATDSGSYTIQLVNTVGSDS 439 (516)
Q Consensus 393 ~~~l~~~~~~~~~-~~~----~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s 439 (516)
+..+......... ... ....|.|..+.. .|.|.|+|.|.|..|...
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~-~d~G~Y~C~a~n~~~~~~ 322 (434)
T 1igy_B 272 NVEVHTAQTQPREEQFNSTFRVVSALPIMHQDW-LNGKEFKCRVNSAAFPAP 322 (434)
T ss_dssp SCCBCCCSCCCCCCCCSSSCCCCCCEECCHHHH-HHTCCCBCCBCCSSCSSC
T ss_pred CcccCCcccCcceeCCCCcEEEEEEEEECHHHc-cCCCcEEEEEECCCCCCc
Confidence 8766432111110 011 124689999999 999999999999998753
|
| >4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* | Back alignment and structure |
|---|
Probab=99.74 E-value=1e-17 Score=164.63 Aligned_cols=220 Identities=12% Similarity=-0.026 Sum_probs=124.8
Q ss_pred CcEEEeCCCcCCCeEEEEEEEecCCCCCCCCCCCcceEeccCCCCCccccCcccceEEecCCeEEEEEeeeeccccccCc
Q psy7039 69 ETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSP 148 (516)
Q Consensus 69 ~~~~~i~~l~~~~~y~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~ 148 (516)
...|.|.+++..|.|.|+|.|.|..|.... ...+.+...+....+. ...+....+.+|+.+.|.|...
T Consensus 78 ~~~L~i~~~~~~D~G~Y~C~a~n~~~~~~~-~~~l~V~~~~~~~~~~--~~~~~~~~~~~g~~~~l~C~~~--------- 145 (349)
T 4dep_C 78 KDVLWFRPTLLNDTGNYTCMLRNTTYCSKV-AFPLEVVQKDSCFNSP--MKLPVHKLYIEYGIQRITCPNV--------- 145 (349)
T ss_dssp TTEEEESSCCGGGCEEEEEEEECSSCEEEE-EEEEEEECCCTTSCCS--CCCCEEEEETTCSEEEEECCSC---------
T ss_pred CCEEEEccCChhhCEEEEEEEecCCceEEE-EEEEEEecCCcccCcc--cccCcceeeecCccEEEEcCCC---------
Confidence 568999999999999999999997654321 1122222211111111 1234456788999999999852
Q ss_pred cccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCC-Cce---EE
Q psy7039 149 LRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNL-GTA---TA 224 (516)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~-g~~---~~ 224 (516)
.+++.+.|.+.+.|++++..+....++.. .+ ..|.|.+++.+|+|.|+|.+.|.. |.. ..
T Consensus 146 ------------~~~~~g~p~~~v~W~k~~~~l~~~~~~~~--~~--~~L~i~~v~~~d~G~Y~C~a~n~~~g~~~~~~~ 209 (349)
T 4dep_C 146 ------------DGYFPSSVKPTITWYMGCYKIQNFNNVIP--EG--MNLSFLIALISNNGNYTCVVTYPENGRTFHLTR 209 (349)
T ss_dssp ------------TTSSCTTSCCEEEEEETTEECCSCSSEEE--ET--TEEEEESCCGGGCEEEEEEEEEEETTEEEEEEE
T ss_pred ------------cccccCCCCceEEEeeCCEECCCccceee--cC--CEEEEeeeeecCCcEEEEEEEEeeCCEEEEEEE
Confidence 00001789999999999998865433322 22 589999999999999999999976 443 23
Q ss_pred EEEeece---------ee---ee-c--cccCCceEEEEEEEEc-cCCCCCceecccccccc------eEEE---------
Q psy7039 225 SAHVTGT---------EF---TD-N--NVHEGKAYEYRVSAVN-AAGTEKPKISLDALIGK------RIKE--------- 273 (516)
Q Consensus 225 ~~~~~~~---------~~---~~-~--~l~~g~~~~~~~~~~~-~~g~p~p~i~W~~~~~~------~~~~--------- 273 (516)
.+.+.+. .+ .. . .+..|+.+.|.|.+.. ..|.|.|.+.|.+.... +...
T Consensus 210 ~~~l~v~~~~~~~~~p~i~~~~~~~~~~v~~G~~v~l~C~~~~~~~g~p~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~ 289 (349)
T 4dep_C 210 TLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEELLIPCTVYFSFLMDSRNEVWWTIDGKKPDDITIDVTINESISHSRT 289 (349)
T ss_dssp EEEEEEECCGGGCCSCEEC----------------CCCEEEEECCCTTCCCEEEEESSCC--------CCCCEEEECCTT
T ss_pred EEEEEEEccCCCCCCCeEecCCCceeEEEecCCcEEEEEEEEEccCCCCCCEEEEEECCEEccccCCccccccceeeecC
Confidence 3333221 11 11 1 5678999999999832 11678999999652211 1100
Q ss_pred EEecceeeEEEccCCCCCc-eEEEEEEEecCCCcceeEEEEEec
Q psy7039 274 FVTSTTASLNIKNSVRKDS-GIYKIEAKNDYGIDMADIEVVVVS 316 (516)
Q Consensus 274 ~~~~~~~~l~i~~l~~~d~-g~y~c~a~n~~g~~~~~~~l~v~~ 316 (516)
........|.|.++..+|. |.|+|.|.|..|.....+.|.|..
T Consensus 290 ~~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~~G~~~~~~~l~v~~ 333 (349)
T 4dep_C 290 EDETRTQILSIKKVTSEDLKRSYVCHARSAKGEVAKAAKVKQKV 333 (349)
T ss_dssp CCEEEEECC-------------CEEEEECSSCEEEEECC-----
T ss_pred CCcEEEEEEEEeeccHHHcCCcEEEEEEcCCCcEEEEEEEeeec
Confidence 0011234599999999999 999999999999988888888754
|
| >2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.4e-16 Score=144.41 Aligned_cols=161 Identities=22% Similarity=0.270 Sum_probs=129.0
Q ss_pred ecCCeEEEEEeeeeccccccCccccccccccCccceeecC-cCceeeEEeeCCeeeccCCceEEeecCCeeEEEeccCCC
Q psy7039 127 KAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLS-EPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFCSR 205 (516)
Q Consensus 127 ~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~ 205 (516)
..++.+.|.|.+. + .|.+.+.|++++..+....++.+...+....|.|.+++.
T Consensus 15 c~~~~~~l~C~~~--------------------------~~~p~~~i~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~ 68 (212)
T 2r15_A 15 STAEGIQLYSFVT--------------------------YYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTP 68 (212)
T ss_dssp ECSSEEEEEEEBS--------------------------SCCSSCEEEEEETTEECCCCSSEEEEEETTEEEEEEESCCG
T ss_pred EcCceEEEEEEEe--------------------------ccCCCceEEEEECCEEccCCCeEEEEEeCCEEEEEECCCCc
Confidence 4677888888887 6 468999999999999888888888777788999999999
Q ss_pred CCCeeEEEEEEcCCCceEEEEEeecee-----------------------e-----eeccccCCceEEEEEEEEccCCCC
Q psy7039 206 SDTGHYSLTLENNLGTATASAHVTGTE-----------------------F-----TDNNVHEGKAYEYRVSAVNAAGTE 257 (516)
Q Consensus 206 ~d~g~Y~c~~~~~~g~~~~~~~~~~~~-----------------------~-----~~~~l~~g~~~~~~~~~~~~~g~p 257 (516)
+|+|.|+|.+.|..|.......+.+.. + ....+..|+.+.+.|.+ .|.|
T Consensus 69 ~D~G~Y~C~~~n~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~---~g~p 145 (212)
T 2r15_A 69 NDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNV---WGDP 145 (212)
T ss_dssp GGCEEEEEEEECSSCEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHSCEEEEBCCSEEEEETTCCEEEEEEE---ECSS
T ss_pred ccCEEEEEEEecCCcceEEEEEEEEeeccchhhhccccCcccccccCCCcccccCCCcEEEccCCeEEEEEEE---cCCC
Confidence 999999999999888777665543211 1 12456789999999998 7899
Q ss_pred Cceeccccc-----ccceEEEEEe-cceeeEEEccCCCCCceEEEEEEEecCCCcceeEEEEEec
Q psy7039 258 KPKISLDAL-----IGKRIKEFVT-STTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVS 316 (516)
Q Consensus 258 ~p~i~W~~~-----~~~~~~~~~~-~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~~~~l~v~~ 316 (516)
.|.+.|.+. ...+..+... .....|.|.++..+|.|.|+|.|.|..|.....+.|.|..
T Consensus 146 ~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~ 210 (212)
T 2r15_A 146 PPEVSWLKNEKALAQTDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVFI 210 (212)
T ss_dssp CCEEEEEETTEEECCCSSEEEEEETTTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred CceEEEEECCeECccCCCEEEEEcCCCEEEEEEcCcchHHCeEEEEEEEcCCCcEEEEEEEEEEc
Confidence 999999652 2233333333 4567999999999999999999999999988888888763
|
| >2q7n_A Leukemia inhibitory factor receptor; cytokine cell surface receptor complex LIFR LIF, cytokine RE cytokine complex; HET: NAG FUC MAN; 4.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.72 E-value=3.9e-15 Score=150.91 Aligned_cols=324 Identities=13% Similarity=0.060 Sum_probs=197.5
Q ss_pred CCCCCCcceEEEee-eCCeeEEEecCCCCC-CCCceeceEEEEEeCCC---CeEEeEEee--cC--CcEEEeCCC--cCC
Q psy7039 12 DEPGKPTDLEATDW-DKDHVDLQWTPPISD-GGSPITGYVVEMKDKTG---NWEKAVVVP--AG--ETSCTVPGL--IEG 80 (516)
Q Consensus 12 ~~p~~p~~l~~~~~-~~~~v~l~W~~p~~~-~~~~i~~Y~v~~~~~~~---~~~~~~~~~--~~--~~~~~i~~l--~~~ 80 (516)
.+|.+|.+|.+... ....+.|+|..+... .-.....|.|++..... .|.....+. +. .....-..+ -+.
T Consensus 88 ~~p~~p~~l~~~~~~~~~~l~~~W~~~~~~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~w~w~s~~pl~c 167 (488)
T 2q7n_A 88 LIPETPEILDLSADFFTSSLLLKWNDRGSALPHPSNATWEIKVLQNPRTEPVALVLLNTMLSGKDTVQHWNWTSDLPLQC 167 (488)
T ss_dssp ECCCCCCEEECCEETTTTEEEEEECBCGGGSCSSEEEEEEEECCCSSSSCSCCCEECCEECSSSCBCCEEEEECSSCCSS
T ss_pred cCCCCCeeEEEEEecCCCeEEEEEeCCCccccccCCeEEEEEEEEeccceEEEEEEEEEEecCCCceeEeeccCCCcccc
Confidence 45999999988755 357899999886421 11113568888644322 232221111 11 111122222 236
Q ss_pred CeEEEEEEEec----CCCCCCCCCCCcceEeccCCCCCccccCcccceEEecCCeEEEEEeeeeccccccCccccccccc
Q psy7039 81 ETYQFQVRAVN----AAGPGEASKPTAPIVAKPKNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRA 156 (516)
Q Consensus 81 ~~y~~~~~a~n----~~g~~~~s~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~ 156 (516)
..|.++++... -.|.+.+|..+........ .+..+. ..|....+..|++++|.|.+.
T Consensus 168 ~~~~v~iR~~~~~~~~~~~~~ws~Ws~~~~~~~~-~~t~i~-v~P~~~~v~~Gs~vtl~C~a~----------------- 228 (488)
T 2q7n_A 168 ATHSVSIRWHIDSPHFSGYKEWSDWSPLKNISWI-RNTETN-VFPQDKVVLAGSNMTICCMSP----------------- 228 (488)
T ss_dssp SCCEEEEEEEECCTTCCSCBCCCCCCCCEECCCC-CCSSCC-EECTTCEEESSCCCEEEECCS-----------------
T ss_pred cceEEEEEEEeccccccCCCCCcCCCChhhcCCc-CCCceE-ECCCCCEEcCCCCEEEEEECC-----------------
Confidence 68888888875 3356667777766655332 233333 455567789999999999886
Q ss_pred cCccceeecCcCceeeEEeeCCeeeccCCceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEEeeceeeeec
Q psy7039 157 NSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVTGTEFTDN 236 (516)
Q Consensus 157 ~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~~~~~~~~~ 236 (516)
. +.|.|++++..+... +..+....|.|.++...|+|.|.|.+.+ .
T Consensus 229 ---------~---~~I~W~~ng~~i~~~-----ri~~~~~~L~I~nl~~sd~g~y~~~C~~-~----------------- 273 (488)
T 2q7n_A 229 ---------T---KVLSGQIGNTLRPLI-----HLYGQTVAIHILNIPVSENSGTNIIFIT-D----------------- 273 (488)
T ss_dssp ---------S---CEEEEEETTEECCCE-----ECSSSCEEEECCSCCCCCSSCEEEEEEE-S-----------------
T ss_pred ---------C---CEEEEEECCEECchh-----hccceEEEEEEeCCCcccCCcEEEEEEc-C-----------------
Confidence 2 489999998776532 1245567888888888888888775431 0
Q ss_pred cccCCceEEEEEEEEccCCCCCceecccccccceEEEEEecceeeEEEccCCCCCceEEEEEEEecCCCcceeEEEEEec
Q psy7039 237 NVHEGKAYEYRVSAVNAAGTEKPKISLDALIGKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVS 316 (516)
Q Consensus 237 ~l~~g~~~~~~~~~~~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~~~~l~v~~ 316 (516)
+. ...+.+.+..
T Consensus 274 ----~~----------------------------------------------------------------i~~~~l~v~~ 285 (488)
T 2q7n_A 274 ----DD----------------------------------------------------------------VYGTVVFAGY 285 (488)
T ss_dssp ----SC----------------------------------------------------------------EEEEEEEEEC
T ss_pred ----Ce----------------------------------------------------------------EEEEEEEeeC
Confidence 00 0112344445
Q ss_pred CCCCCCCCceeeeccCCeeEEEecCCCCC--CCCceeeccccccccccccEEEEcCCeEEEEEEEeeecCCceEEEECCe
Q psy7039 317 KPGPPTGPIDYTTVTPESVSMSWKPPVDD--GGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGD 394 (516)
Q Consensus 317 ~p~~p~~p~~~~~~~~~~~~l~W~~p~~~--~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~ 394 (516)
+|.+|.. +.+......++.++|.++.+. +|.+++.|..... ..|.. -.|.. ...
T Consensus 286 pP~~P~n-l~C~~~~~~svtcsW~pg~~~~l~G~~~t~Y~L~y~---------~~g~~--~~c~~------------~~~ 341 (488)
T 2q7n_A 286 PPDVPQK-LSCETHDLKEIICSWNPGRITGLVGPRNTEYTLFES---------ISGKS--AVFHR------------IEG 341 (488)
T ss_dssp CCCCCCS-CEEEBSSSSEEEEEECCCSCCCCCTTSSCEEEEEET---------TTCCE--EEEEC------------SSC
T ss_pred CCCCCcc-cEEEEcCCCEEEEEEeCCCcCCCCCCCceeEEEEEE---------ECCCC--CCCcc------------ccc
Confidence 5555544 677777888999999998876 3556666621100 01111 12221 110
Q ss_pred ecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEEEEe----cCCCCCCCCcccccccCCeEEEE
Q psy7039 395 EVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVV----DKPSPPQGPLDVSDITPESCSLS 470 (516)
Q Consensus 395 ~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~v~----~~p~~P~~~l~~~~~~~~~~~l~ 470 (516)
. .+....+.+..... ...|.|+|.|.|..|.... .+.+. .+|.|| .++++..++..++.|+
T Consensus 342 --~---------~~~~~~ct~~l~~~-~t~Y~f~V~A~N~~G~~~S--~~~~~~~~~v~P~PP-~nl~v~~~s~~sl~Ls 406 (488)
T 2q7n_A 342 --L---------TNETYRLGVQMHPG-QEIHNFTLTGRNPLGQAQS--AVVINVTERVAPHDP-TSLKVKDINSTVVTFS 406 (488)
T ss_dssp --C---------CSSCEEEEEECCSS-CCCCEEEEEEEETTEEEEE--EEECCGGGTBCCCCC-EEEEEEECSTTCEEEE
T ss_pred --c---------CCceEEEEEcCCCC-ccEEEEEEEEEeCCCCccc--eEEEEecCCCCCCCC-eEEEEEecCCCEEEEE
Confidence 0 01112344544433 4788999999999998543 33332 357777 7888888888999999
Q ss_pred eeCCCCCCCCCcceEEEEEEecCCCce
Q psy7039 471 WKPPLDDGGSPITNYVVEKYESATGVS 497 (516)
Q Consensus 471 W~~p~~~~~~~i~~Y~v~~~~~~~~~~ 497 (516)
|++|... ++.+..|.|+|+..+...+
T Consensus 407 W~pP~~~-~g~~l~YeV~Yr~~~~~~w 432 (488)
T 2q7n_A 407 WYLPGNF-TKINLLCQIEICKANSKKE 432 (488)
T ss_dssp EEEEEEC-SSSEEEEEEEEBCTTSCCE
T ss_pred EeCCCCC-CCcceEEEEEEEECCCCCc
Confidence 9998533 4678999999998866443
|
| >2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.72 E-value=2.1e-16 Score=143.30 Aligned_cols=185 Identities=16% Similarity=0.184 Sum_probs=131.8
Q ss_pred CCceEEEEEEEEccCC-CCCceeccccc-----ccceEEEEEecceeeEEEccCCCCCceEEEEEEEecCCCcceeEEEE
Q psy7039 240 EGKAYEYRVSAVNAAG-TEKPKISLDAL-----IGKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVV 313 (516)
Q Consensus 240 ~g~~~~~~~~~~~~~g-~p~p~i~W~~~-----~~~~~~~~~~~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~~~~l~ 313 (516)
.++...+.|.+ .| .|.+.+.|.+. ...+..+........|.|.++..+|+|.|+|.|.|..|.....+.+.
T Consensus 16 ~~~~~~l~C~~---~~~~p~~~i~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~n~~~~~~~~~~l~ 92 (212)
T 2r15_A 16 TAEGIQLYSFV---TYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLS 92 (212)
T ss_dssp CSSEEEEEEEB---SSCCSSCEEEEEETTEECCCCSSEEEEEETTEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEEC
T ss_pred cCceEEEEEEE---eccCCCceEEEEECCEEccCCCeEEEEEeCCEEEEEECCCCcccCEEEEEEEecCCcceEEEEEEE
Confidence 45667788877 55 46889999652 23455555566677899999999999999999999887766666665
Q ss_pred EecCCCCCCCCceeee--c-cCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeeecCCceEEE
Q psy7039 314 VVSKPGPPTGPIDYTT--V-TPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWT 390 (516)
Q Consensus 314 v~~~p~~p~~p~~~~~--~-~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~ 390 (516)
+...+........+.. . ......+.. ..+....+..|+.+.|.|.+.|.|.+.+.|+
T Consensus 93 v~~~~~~~~~~~~~~~~~~~~~~~p~~~~--------------------~~~~~~~v~~g~~~~l~C~~~g~p~p~v~W~ 152 (212)
T 2r15_A 93 GQAYDEAYAEFQRLKQAAIAEKNRARVLG--------------------GLPDVVTIQEGKALNLTCNVWGDPPPEVSWL 152 (212)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCEEEE--------------------BCCSEEEEETTCCEEEEEEEECSSCCEEEEE
T ss_pred EeeccchhhhccccCcccccccCCCcccc--------------------cCCCcEEEccCCeEEEEEEEcCCCCceEEEE
Confidence 4320000000000000 0 000000000 1234567899999999999999999999999
Q ss_pred ECCeecCCCCceEEEEc-CCeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEEEEec
Q psy7039 391 VNGDEVSPDGRIKFETS-ENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVD 448 (516)
Q Consensus 391 ~~~~~l~~~~~~~~~~~-~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~v~~ 448 (516)
+++..+..+.++.+... +....|.|.++.. .|.|.|+|.|.|..|....++.|.|..
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~-~d~G~Y~C~a~N~~g~~~~~~~l~V~~ 210 (212)
T 2r15_A 153 KNEKALAQTDHCNLKFEAGRTAYFTINGVST-ADSGKYGLVVKNKYGSETSDFTVSVFI 210 (212)
T ss_dssp ETTEEECCCSSEEEEEETTTEEEEEESSCCG-GGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred ECCeECccCCCEEEEEcCCCEEEEEEcCcch-HHCeEEEEEEEcCCCcEEEEEEEEEEc
Confidence 99999887777777665 5667899999999 999999999999999998888888863
|
| >3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.3e-16 Score=144.39 Aligned_cols=184 Identities=14% Similarity=0.197 Sum_probs=122.4
Q ss_pred eccccCCceEEEEEEEEccCCCCCceeccccc-----ccceEEEEEec--ceeeEEEccCCCCCceEEEEEEEecCCCcc
Q psy7039 235 DNNVHEGKAYEYRVSAVNAAGTEKPKISLDAL-----IGKRIKEFVTS--TTASLNIKNSVRKDSGIYKIEAKNDYGIDM 307 (516)
Q Consensus 235 ~~~l~~g~~~~~~~~~~~~~g~p~p~i~W~~~-----~~~~~~~~~~~--~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~ 307 (516)
...+.+|....|.|.+. .+.|.|.+.|.+. .+.+..+.... ....|.|.++..+|+|.|+|.|.| |...
T Consensus 11 ~~~v~eg~~v~l~c~~~--~~~P~p~i~W~kng~~l~~~~~~~~~~~~~~g~~~L~I~~v~~~D~G~Y~C~a~N--g~a~ 86 (207)
T 3rbs_A 11 AVEILEKGQVRFWMQAE--KLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQD--GKAT 86 (207)
T ss_dssp EEEECGGGCEEEEEECS--CCCSCCEEEEEETTEEECSSSSCEEEECTTTCEEEEEESCCCGGGCEEEEEEEEE--TTEE
T ss_pred ceEEEeCCeEEEEEEEe--cCCCCCEEEEEECCEECccCCCEEEEEeCCCCEEEEEECCCChhhCEEEEEEEEC--CCeE
Confidence 34567899999999872 4579999999652 22333444333 445799999999999999999999 4444
Q ss_pred eeEEEEEecCCCCCCCCceeeeccCCeeEEEe---cCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeee-c
Q psy7039 308 ADIEVVVVSKPGPPTGPIDYTTVTPESVSMSW---KPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGR-P 383 (516)
Q Consensus 308 ~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W---~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~-p 383 (516)
....+.+........ +........ .| .+|. + .......+.+|+.+.|.|.+.|. |
T Consensus 87 ~~~~~~~~~~~~~~~--~~~~~~~~~----~~~~~~~P~------~---------~~~~~~~v~~g~~v~l~C~v~g~~P 145 (207)
T 3rbs_A 87 NHSTVVLVGDVFKKL--QKEAEFQRQ----EWIRKQGPH------F---------VEYLSWEVTGECNVLLKCKVANIKK 145 (207)
T ss_dssp EEEEEEECTHHHHHH--HHHHHHHHH----HHHHHTSSE------E---------EEEEEEEEETTTEEEEEEEEESCCT
T ss_pred EEEEEEEEccchhhh--ccccccccc----ccccCCCCc------e---------EecCCcEEcCCCcEEEEEEEeCCCC
Confidence 433332211000000 000000000 00 0000 0 00113678899999999999999 8
Q ss_pred CCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEEEE
Q psy7039 384 KPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYV 446 (516)
Q Consensus 384 ~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~v 446 (516)
.|.+.|++++..+..+.++. ...+...|.|.++.. .|+|.|+|.|.|..|....++.|+.
T Consensus 146 ~p~i~W~k~g~~l~~~~~~~--~~~~~~~L~I~~v~~-~D~G~Y~C~a~N~~G~~~~~~~L~~ 205 (207)
T 3rbs_A 146 ETHIVWYKDEREISVDEKHD--FKDGICTLLITEFSK-KDAGIYEVILKDDRGKDKSRLKLVD 205 (207)
T ss_dssp TCEEEEEETTEEECCCCCCC--CSSEEEEEEETTCCG-GGCEEEEEEEEETTEEEEEEEEECC
T ss_pred CCEEEEEECCEECCCCCceE--cCCCEEEEEECCCCc-ccCEEEEEEEEcCCCEEEEEEEEec
Confidence 99999999999887655542 233445799999999 9999999999999999988887764
|
| >1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A | Back alignment and structure |
|---|
Probab=99.72 E-value=2e-16 Score=140.88 Aligned_cols=126 Identities=23% Similarity=0.275 Sum_probs=88.5
Q ss_pred eeeEEEccCCCCCceEEEEEEEecCC-CcceeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccc
Q psy7039 279 TASLNIKNSVRKDSGIYKIEAKNDYG-IDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKIT 357 (516)
Q Consensus 279 ~~~l~i~~l~~~d~g~y~c~a~n~~g-~~~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~ 357 (516)
...|.|.++..+|+|.|+|.+.|..+ .....+.|.|..+|....
T Consensus 61 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~----------------------------------- 105 (191)
T 1epf_A 61 SSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKN----------------------------------- 105 (191)
T ss_dssp EEEEEECSCCGGGCEEEEEEEEETTTEEEEEEEEEEEECCSEEEE-----------------------------------
T ss_pred ceEEEEccCCcccCEEEEEEEEcCCCcceEEEEEEEeecCceEec-----------------------------------
Confidence 34566777777777777777777653 334455566654432211
Q ss_pred cccccccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCC--CceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCC
Q psy7039 358 SDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPD--GRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTV 435 (516)
Q Consensus 358 ~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~--~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~ 435 (516)
.+....+..|+.+.|.|.+.|.|.+.+.|++++..+... .++... .+ ..|.|.++.. .|.|.|+|.|.|..
T Consensus 106 ---~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~--~~-~~L~i~~~~~-~d~G~Y~C~a~n~~ 178 (191)
T 1epf_A 106 ---APTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVL--SN-NYLQIRGIKK-TDEGTYRCEGRILA 178 (191)
T ss_dssp ---CCSSEECCTTSCEEECCEEECSSCCEEEEEETTEEGGGGCCTTEEEC--TT-SCEEETTCCG-GGCEEEEEEEEEGG
T ss_pred ---CCCcEeecCCCeEEEEEEECCCCCCEEEEEECCEEeeccCCceEEEe--cC-CeEEECCCCh-hhCEEEEEEEEEec
Confidence 123456779999999999999999999999999887533 343332 22 2699999999 99999999999998
Q ss_pred CceeEEEEEEE
Q psy7039 436 GSDSASCKVYV 446 (516)
Q Consensus 436 G~~s~s~~l~v 446 (516)
|.......+.|
T Consensus 179 ~~~~~~~~i~v 189 (191)
T 1epf_A 179 RGEINFKDIQV 189 (191)
T ss_dssp GTEEEEEEEEE
T ss_pred ceeEEEEEEEE
Confidence 76655555544
|
| >3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.4e-16 Score=151.99 Aligned_cols=209 Identities=10% Similarity=0.064 Sum_probs=133.6
Q ss_pred cEEEeCCCcCCCeEEEEEEEecCCCCCCCCCCCcceEeccCCCCCccccCccc--ceEEecCCeEEEEEeeeeccccccC
Q psy7039 70 TSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAPRIDRSTLN--DVKIKAGQSFSFDVKEFRELSYTKS 147 (516)
Q Consensus 70 ~~~~i~~l~~~~~y~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~p~~~~~~~~--~~~v~~g~~~~l~C~~~~~~~~~~~ 147 (516)
..|.|.+++..|.|.|+|.|.|..|..........+.+..+ ..|.+. ..+. .+.+.+|+.+.|.|.+.
T Consensus 51 ~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~~~~v~v~~p-~~~~~~-~~~~~~~~~v~~G~~v~l~C~~~-------- 120 (289)
T 3mjg_X 51 SVLTLTNLTGLDTGEYFCTHNDSRGLETDERKRLYIFVPDP-TVGFLP-NDAEELFIFLTEITEITIPCRVT-------- 120 (289)
T ss_dssp EEEEECSCCGGGCEEEEEECCC------CCCEEEEEECCCT-TCCBCC-CCHHHHEEEESSCCCEEECCCBS--------
T ss_pred EEEEEccCChhhCEEEEEEEcccCCCCcCcEEeEEEEEECC-CcCccc-CCCCcceEEeecCCeEEEEeEcC--------
Confidence 57999999999999999999998765332223333443321 223222 2222 27789999999999987
Q ss_pred ccccccccccCccceeecCcCceeeEEeeCC--eeeccCCceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEE
Q psy7039 148 PLRALGVRANSTKGWVKLSEPFLNHGWSING--QVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATAS 225 (516)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~--~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~ 225 (516)
.|.+.++|++.+ ..+. . ... ... .+. ...|+|.|+|.+.|..+.....
T Consensus 121 -------------------~p~~~v~w~~~~~~~~~~--~--~~~--~~~-~~~----~~~d~G~Y~C~a~n~~~~~~s~ 170 (289)
T 3mjg_X 121 -------------------DPQLVVTLHEKKGDVALP--V--PYD--HQR-GFS----GIFEDRSYICKTTIGDREVDSD 170 (289)
T ss_dssp -------------------CTTSCEEEEESSCCSCCC--C--CEE--TTT-EEE----ECCCSSEEEEEEEETTEEEECC
T ss_pred -------------------CCCceEEEEeCCCCCccc--e--eec--CCc-Cee----eeccCcEEEEEEEeCCceeeee
Confidence 355677887754 3322 1 111 011 111 3579999999999766554322
Q ss_pred ---EEeec---eee----eeccccCCceEEEEEEEEccCCCCCceeccccc---ccc---eEEEEE----ecceeeEEEc
Q psy7039 226 ---AHVTG---TEF----TDNNVHEGKAYEYRVSAVNAAGTEKPKISLDAL---IGK---RIKEFV----TSTTASLNIK 285 (516)
Q Consensus 226 ---~~~~~---~~~----~~~~l~~g~~~~~~~~~~~~~g~p~p~i~W~~~---~~~---~~~~~~----~~~~~~l~i~ 285 (516)
+.+.. ..+ ....+..|+.+.|.|.+ .|.|.|.+.|... .+. ...... ......|.|.
T Consensus 171 ~~~l~v~~~~~p~i~~~~~~~~v~~G~~v~L~C~~---~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~ 247 (289)
T 3mjg_X 171 AYYVYRLQVSSINVSVNAVQTVVRQGENITLMCIV---IGNEVVNFEWTYPRKESGRLVEPVTDFLLDMPYHIRSILHIP 247 (289)
T ss_dssp CEEEEECCCCCCCCEEEESCSEEETTSCEEEEEEE---ESCSSBEEEEECTTSSSSCCCCCEEEESCTTTTEEEEEEEES
T ss_pred eEEEEecCCCCCCcEEeCCcceeEcCCCEEEEEEE---CCCCCcceEEEcCCccCCCcccccccccCCcceEEEEEEEEc
Confidence 22211 111 22457789999999999 7789999999731 111 111111 2245789999
Q ss_pred cCCCCCceEEEEEEEecCCCcceeEEEEEecCCCCC
Q psy7039 286 NSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPP 321 (516)
Q Consensus 286 ~l~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~p 321 (516)
++..+|+|.|+|.|.|..|....++.|.|...+...
T Consensus 248 ~v~~~D~G~Y~C~a~N~~G~~~~~~~l~v~~~~~~~ 283 (289)
T 3mjg_X 248 SAELEDSGTYTCNVTESVNDHQDEKAINITVVESGH 283 (289)
T ss_dssp SCCSSCCEEEEEEEEETTTTEEEEEEEEEEEEC---
T ss_pred ccChhhCcEEEEEeecCCCCceeEEEEEEEEEecCc
Confidence 999999999999999999999999999998877654
|
| >2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=1.3e-16 Score=145.45 Aligned_cols=87 Identities=23% Similarity=0.368 Sum_probs=65.1
Q ss_pred ccEEEEcCCeEEEEEEE-eeecCCceEEEECCeecCC--------CCceEEEEcCCeEEEEEcCceecCCceEEEEEEEc
Q psy7039 363 RDMTVLAGEEFTITVPF-SGRPKPTPIWTVNGDEVSP--------DGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVN 433 (516)
Q Consensus 363 ~~~~v~~g~~~~l~C~~-~g~p~~~i~W~~~~~~l~~--------~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n 433 (516)
....+..|+.+.|.|.+ .+.|.+.+.|++++..+.. ..++... ....|.|.++.. .|.|.|+|.|.|
T Consensus 116 ~~~~~~~g~~v~l~C~~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~---~~~~L~i~~~~~-~d~G~Y~C~a~N 191 (217)
T 2vr9_A 116 KDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIV---DGGNLLISNVEP-IDEGNYKCIAQN 191 (217)
T ss_dssp CCEEECTTSCEEECCBCCCEESCCEEEEEETTEEECCCCCC---CCCSEEEE---TTTEEEESSCCS-TTCEEEEEEEEE
T ss_pred CccEEcCCCeEEEEEECCCCCCCCeEEEEECCcCCCcccccccccCCcEEec---CCCcEEEeeCCH-HHCeEEEEEEEc
Confidence 34567899999999999 8999999999999988763 2233322 123699999999 999999999999
Q ss_pred CCCceeEEEEEEEecCCCCC
Q psy7039 434 TVGSDSASCKVYVVDKPSPP 453 (516)
Q Consensus 434 ~~G~~s~s~~l~v~~~p~~P 453 (516)
..|....+..+.+......+
T Consensus 192 ~~G~~~~~~~~lv~~~~~~~ 211 (217)
T 2vr9_A 192 LVGTRESSYAKLIVQVKAAA 211 (217)
T ss_dssp TTEEEECCCEEEEEC-----
T ss_pred ccceeccccEEEEEEeehhh
Confidence 99998777666565444333
|
| >3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A | Back alignment and structure |
|---|
Probab=99.71 E-value=2.6e-17 Score=160.30 Aligned_cols=215 Identities=12% Similarity=0.066 Sum_probs=145.7
Q ss_pred CCcEEEeCCCcCCCeEEEEEEEe-cCCCCCCCCCCCcceEeccCCCCCccc-cCcccceEEecC---CeEEEEEe-eeec
Q psy7039 68 GETSCTVPGLIEGETYQFQVRAV-NAAGPGEASKPTAPIVAKPKNLAPRID-RSTLNDVKIKAG---QSFSFDVK-EFRE 141 (516)
Q Consensus 68 ~~~~~~i~~l~~~~~y~~~~~a~-n~~g~~~~s~~~~~~~~~~~~~~p~~~-~~~~~~~~v~~g---~~~~l~C~-~~~~ 141 (516)
...+|.|.+++..|.|.|+|.+. +..|... ....+.+. .+|.+. ......+.+.+| +.+.|.|. ..
T Consensus 90 ~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~---~~~~l~V~---~~p~~~~~~~~~~~~~~~g~~~~~~~l~C~~~~-- 161 (331)
T 3u83_A 90 TDGTIRLSRLELEDEGVYICEFATFPTGNRE---SQLNLTVM---AKPTNWIEGTQAVLRAKKGQDDKVLVATCTSAN-- 161 (331)
T ss_dssp SBCCEEECSCCGGGCEEEEEEEEEETTEEEE---EEEEEEEE---BCCEEEEEECSSCEEECTTCCCCEEEEEEEEEE--
T ss_pred CCceEEEcccCcccCcEEEEEEEecCCCccE---EEEEEEEe---cCCcceeecCCCceeecCCCccceEEEEEEecC--
Confidence 45679999999999999999844 4334211 12222222 244432 134556778888 78999997 66
Q ss_pred cccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEee-cC---CeeEEEeccCCCCCCeeEEEEEEc
Q psy7039 142 LSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQT-TK---SETVLDIPFCSRSDTGHYSLTLEN 217 (516)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~-~~---~~~~l~i~~~~~~d~g~Y~c~~~~ 217 (516)
+.|.+.+.|+++....... ..... .+ ....|.|.++..+|+|.|+|.+.|
T Consensus 162 ------------------------~~p~~~i~W~~~~~~~~~~--~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n 215 (331)
T 3u83_A 162 ------------------------GKPPSVVSWETRLKGEAEY--QEIRNPNGTVTVISRYRLVPSREAHQQSLACIVNY 215 (331)
T ss_dssp ------------------------EBSCCEEEEEESSCCEEEE--EEEECTTSCEEEEEEEEECCCGGGTTCEEEEEEEE
T ss_pred ------------------------CcCCceEEEEcCCCCcccc--ceeECCCCcEEEEEEEEEEeccccCCCEEEEEEec
Confidence 8899999999853322110 01111 11 125789999999999999999999
Q ss_pred CCCceEEEEEeecee---e-----eeccccCCceEEEEEEEEccCCCCCce-ecccccccceEEEEEecceeeEEEc-cC
Q psy7039 218 NLGTATASAHVTGTE---F-----TDNNVHEGKAYEYRVSAVNAAGTEKPK-ISLDALIGKRIKEFVTSTTASLNIK-NS 287 (516)
Q Consensus 218 ~~g~~~~~~~~~~~~---~-----~~~~l~~g~~~~~~~~~~~~~g~p~p~-i~W~~~~~~~~~~~~~~~~~~l~i~-~l 287 (516)
..|.......+.+.. + ....+.+|+...|.|.+ .|.|.|. +.|.+....... ........|.|. ++
T Consensus 216 ~~~~~~~~~~l~V~~~P~~~~~~~~~~~~~~g~~~~l~C~~---~g~p~p~~i~W~~~~~~~~~-~~~~~~~~L~i~~~v 291 (331)
T 3u83_A 216 HMDRFKESLTLNVQYEPEVTIEGFDGNWYLQRMDVKLTCKA---DANPPATEYHWTTLNGSLPK-GVEAQNRTLFFKGPI 291 (331)
T ss_dssp TTEEEEEEEECCEEEEEEEEEECCCSCCBTTCCCEEEEEEE---EEESCCCEEEEEETTBSCCT-TEEEETTEEEECSCC
T ss_pred CCCcceeeEEEEEecCCeEEEecCCCceEeCCCeEEEEEeC---cCCCCCCEEEEEECCCcccc-cceecCcEEEEeCCC
Confidence 988766655433321 1 12336789999999998 7889998 999652221000 011234689999 89
Q ss_pred CCCCceEEEEEEEecCCCcceeEEEEEecCCCC
Q psy7039 288 VRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGP 320 (516)
Q Consensus 288 ~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~ 320 (516)
..+|.|.|+|.|.|..|.....+.|.|...+..
T Consensus 292 ~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~~~~ 324 (331)
T 3u83_A 292 NYSLAGTYICEATNPIGTRSGQVEVNITEAAAL 324 (331)
T ss_dssp CGGGCEEEEEEEEETTEEEEEEEEECCBC----
T ss_pred ccccCeEEEEEEEeccccceEEEEEEEeccchh
Confidence 999999999999999999988888888876654
|
| >2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A | Back alignment and structure |
|---|
Probab=99.71 E-value=2.1e-16 Score=143.17 Aligned_cols=132 Identities=21% Similarity=0.280 Sum_probs=97.1
Q ss_pred eEEEccCCCCCceEEEEEEEecCCCc-ceeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccc
Q psy7039 281 SLNIKNSVRKDSGIYKIEAKNDYGID-MADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSD 359 (516)
Q Consensus 281 ~l~i~~l~~~d~g~y~c~a~n~~g~~-~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~ 359 (516)
.+.|.++...|+|.|+|.+.|..|.. .....+.|...+....
T Consensus 73 ~l~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~~l~V~~~~~~~~------------------------------------- 115 (212)
T 2v9r_A 73 RIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAILRDDFR------------------------------------- 115 (212)
T ss_dssp SCCCCSSCCCSCEEEEEEEEETTEEEECCCEEEEECEECSSCS-------------------------------------
T ss_pred EEEecCCCcccCeEEEEEEECCCCceeecceEEEEEeccccce-------------------------------------
Confidence 34566788999999999999988765 4466677665433211
Q ss_pred cccccEEEEcCCeEEEEEEE-eeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCce
Q psy7039 360 LSIRDMTVLAGEEFTITVPF-SGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSD 438 (516)
Q Consensus 360 ~~~~~~~v~~g~~~~l~C~~-~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~ 438 (516)
..+....+..|+.+.|.|.+ .+.|.+.+.|++++..+.......... . ..|.|.++.. .|.|.|+|.|.|..|..
T Consensus 116 ~~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~~~~~~l~~~~~~~~~~-~--~~L~i~~~~~-~d~G~Y~C~a~N~~g~~ 191 (212)
T 2v9r_A 116 QNPSDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERITIR-G--GKLMITYTRK-SDAGKYVCVGTNMVGER 191 (212)
T ss_dssp BCCCCEEEETTSCEEEECBCCCEESCCEEEEEETTEEECTTSTTEEEE-T--TEEEESSCCG-GGCEEEEEEEEETTEEE
T ss_pred eCCCceEecCCCcEEEEEecCCCCCCCEEEEEECCccCCCCcceEEcc-C--CeEEEeeCCH-hhCeeEEEEEecccCce
Confidence 12344678899999999999 899999999999998886543322222 2 3699999999 99999999999999985
Q ss_pred eE-EEEEEEecCCCCC
Q psy7039 439 SA-SCKVYVVDKPSPP 453 (516)
Q Consensus 439 s~-s~~l~v~~~p~~P 453 (516)
.. .+.|.|..+|...
T Consensus 192 ~s~~~~l~V~~~P~~~ 207 (212)
T 2v9r_A 192 ESEVAELTVLERPSFV 207 (212)
T ss_dssp ECCCEEEEEEC-----
T ss_pred ecceEEEEEEeCchHh
Confidence 44 4889998776543
|
| >4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=5.6e-17 Score=154.90 Aligned_cols=214 Identities=13% Similarity=0.023 Sum_probs=140.8
Q ss_pred CCcEEEeCCCcCCCeEEEEEEEecCCCCCCCCCCCcceEeccCCCCCccccCcccceEEecCCeEEEEEeeeeccccccC
Q psy7039 68 GETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKS 147 (516)
Q Consensus 68 ~~~~~~i~~l~~~~~y~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~ 147 (516)
...+|.|.+++..|.|.|+|.|.|..|... ....+.+.. +|.+....+..+.+.+|+.+.|.|.+.
T Consensus 49 ~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~---~~~~l~V~~---~~~~~~~~~~~~~v~~g~~v~l~C~~~-------- 114 (292)
T 4dkd_C 49 SSSILSTNNATFQNTGTYRCTEPGDPLGGS---AAIHLYVKD---PARPWNVLAQEVVVFEDQDALLPCLLT-------- 114 (292)
T ss_dssp TEEEEEESSCCGGGCSCEEECCCC----CC---EEECCEECC---SSCCEEESCSEEEEETTSCEECCEEES--------
T ss_pred ceEEEEEcccccccCEEEEEEEccCCCCcc---eEEEEEEcC---ccccccccCCeEEEcCCCcEEEeeeCC--------
Confidence 356899999999999999999988766441 222333332 333222445578899999999999998
Q ss_pred ccccccccccCccceeecCcCc--eeeEEeeC-CeeeccCCceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCceEE
Q psy7039 148 PLRALGVRANSTKGWVKLSEPF--LNHGWSIN-GQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATA 224 (516)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~p~--~~i~W~~~-~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~ 224 (516)
+ |. +.+.|+++ +..+....++.+.. ...|.|.+++.+|+|.|+|.+.|..+....
T Consensus 115 ------------------~-~~~~~~v~W~~~~~~~~~~~~~~~~~~---~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~s 172 (292)
T 4dkd_C 115 ------------------D-PVLEAGVSLVRVRGRPLMRHTNYSFSP---WHGFTIHRAKFIQSQDYQCSALMGGRKVMS 172 (292)
T ss_dssp ------------------S-GGGGSSEEEEEGGGCCCCSSCCEECCS---SSCCEETTCCGGGCSEEEEEECSTTSCEEC
T ss_pred ------------------C-CCcceeEEEEecCCCccccCCcccccC---CceEEECCCCHHHCeEEEEEEEeCCCceeE
Confidence 6 44 78999987 55554444444332 234999999999999999999987664422
Q ss_pred -EEE--eec-----eee----eeccccCCceEEEEEEEEccCCCC-Cceeccccccc---ceEEEEE----ecceeeEEE
Q psy7039 225 -SAH--VTG-----TEF----TDNNVHEGKAYEYRVSAVNAAGTE-KPKISLDALIG---KRIKEFV----TSTTASLNI 284 (516)
Q Consensus 225 -~~~--~~~-----~~~----~~~~l~~g~~~~~~~~~~~~~g~p-~p~i~W~~~~~---~~~~~~~----~~~~~~l~i 284 (516)
... +.. ..+ ....+..|+.+.+.|.+. |.+ ++.+.|.+... ....... ......|.|
T Consensus 173 ~~~~l~V~~~~~~~p~i~~~~~~~~~~~g~~v~l~C~~~---~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~L~i 249 (292)
T 4dkd_C 173 ISIRLKVQKVIPGPPALTLVPAELVRIRGEAAQIVCSAS---SVDVNFDVFLQHNNTKLAIPQQSDFHNNRYQKVLTLNL 249 (292)
T ss_dssp CCEEEEEECCCCSSCEEEEESSCBCCCSSSCEEEEEEEE---ESSSCCEEECCBSSCCCCCCBEEEEETTEEEEEEEEEE
T ss_pred EEEEEEEeCCCCCCCeEEccCCceeEecCCCEEEEEEec---CCCCceEEEEeCCCcccccCccceeccceeeeEEEEEE
Confidence 222 221 111 122346899999999994 444 45677855211 1111111 123458999
Q ss_pred ccCCCCCceEEEEEEEecCCCcceeEEEEEecCCCC
Q psy7039 285 KNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGP 320 (516)
Q Consensus 285 ~~l~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~ 320 (516)
.++..+|+|.|+|.|.|..|..+.++.|.|......
T Consensus 250 ~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~~~~ 285 (292)
T 4dkd_C 250 DQVDFQHAGNYSCVASNVQGKHSTSMFFRVVESAGN 285 (292)
T ss_dssp SSCCTTSCEEEEEEEECSSCEEEEEEEECC------
T ss_pred CccChhcCeEEEEEEecCCCCceeEEEEEEeeCCCc
Confidence 999999999999999999999988888888776544
|
| >3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane, disulfide bond, glycoprotein, immunoglobulin domain, membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.70 E-value=2.2e-16 Score=166.47 Aligned_cols=357 Identities=14% Similarity=0.110 Sum_probs=197.4
Q ss_pred CCCCCCcceEE--EeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCC-CeEEeEE--eecCCcEEEeCCCcCCCeEEEE
Q psy7039 12 DEPGKPTDLEA--TDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTG-NWEKAVV--VPAGETSCTVPGLIEGETYQFQ 86 (516)
Q Consensus 12 ~~p~~p~~l~~--~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~-~~~~~~~--~~~~~~~~~i~~l~~~~~y~~~ 86 (516)
.+|+||.++.+ ...+++++.|+|.+|.. .+..+.+|+|+|+..++ .|..... .....+++.|.+|.+++.|.|+
T Consensus 197 ~~p~pP~~~~~~~~~~~~~~v~l~W~~p~~-~~~~~~~Y~v~~~~~~~~~w~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~ 275 (589)
T 3l5h_A 197 VKPNPPHNLSVINSEELSSILKLTWTNPSI-KSVIILKYNIQYRTKDASTWSQIPPEDTASTRSSFTVQDLKPFTEYVFR 275 (589)
T ss_dssp EECCCCCSCEEECTTTCTTCEEEECCCCGG-GGTSCEEEEEEEEETTCSCCBCCCTTSSCSCCSEEEECSCCSSCCEEEE
T ss_pred EEcCCCceEEEEecCCCCCeEEEEeCCCCC-CCeeeEEEEEEECCCCCCCcEEEccccCcCceeEEEECCCCCCCEEEEE
Confidence 47999999999 45788999999999854 34578999999999765 7865432 2335689999999999999999
Q ss_pred EEEecCCCCCCCCCCCcceEeccCCCCCccccCcccceE-E---ecCCeEEEEEeeeeccccccCccccccccccCccce
Q psy7039 87 VRAVNAAGPGEASKPTAPIVAKPKNLAPRIDRSTLNDVK-I---KAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGW 162 (516)
Q Consensus 87 ~~a~n~~g~~~~s~~~~~~~~~~~~~~p~~~~~~~~~~~-v---~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (516)
|+|.|..|.+.++..+..+...+...+|. ..+.... + .....-.+.+.|. ++++..+.|.-.++
T Consensus 276 V~a~~~~g~g~~S~~S~~~~~~T~~~~P~---~~p~~~~~v~~~~~~~~~~v~l~W~-----p~~~~~~~g~i~~Y---- 343 (589)
T 3l5h_A 276 IRCMKEDGKGYWSDWSEEASGITYEDRPS---KAPSFWYKIDPSHTQGYRTVQLVWK-----TLPPFEANGKILDY---- 343 (589)
T ss_dssp EEEEESSSCSCCCCCCCCBCCCCCCCCCC---SCCCEEEECCSCSSTTSCCEEEEEC-----CCCTTTSSSCCCEE----
T ss_pred EEEEeCCCCCccCCCCCccccccCccCCC---CCCcEEEEeecCcCCCcceEEEEEe-----eCCchhccCceeeE----
Confidence 99999999887776665555444444442 1222111 1 1112223333333 00011111111111
Q ss_pred eecCcCceeeEEeeCCeeeccCCceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEEeeceeeeecccc-CC
Q psy7039 163 VKLSEPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVTGTEFTDNNVH-EG 241 (516)
Q Consensus 163 ~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~~~~~~~~~~l~-~g 241 (516)
.+.|...+.... .. ......+.+ +.....+.+++.+.|..|....+... +...... +.
T Consensus 344 --------~v~~~~~~~~~~-----~~--~~~~~~~~~--l~~~~~Y~~~V~A~n~~G~~~~s~~~----~~~~~~~~~~ 402 (589)
T 3l5h_A 344 --------EVTLTRWKSHLQ-----NY--TVNATKLTV--NLTNDRYLATLTVRNLVGKSDAAVLT----IPACDFQATH 402 (589)
T ss_dssp --------EEEECCTTSCCC-----BC--CCSSSCCEE--CCCSSCCCEEEEEEBTTBCCCCCCCC----CCCTTCCCCS
T ss_pred --------EEEEecCCCCce-----ee--ccCCceEEE--EeCCCCEEEEEEEEeCCccCCCeEEE----eecccccCCC
Confidence 222222111100 00 111122222 44666777888888877765432110 0000000 00
Q ss_pred ceEEEEEEEEccCCCCCceecccccc----cceEEEE---------------EecceeeEEEccCCCCCceEEEEEEEec
Q psy7039 242 KAYEYRVSAVNAAGTEKPKISLDALI----GKRIKEF---------------VTSTTASLNIKNSVRKDSGIYKIEAKND 302 (516)
Q Consensus 242 ~~~~~~~~~~~~~g~p~p~i~W~~~~----~~~~~~~---------------~~~~~~~l~i~~l~~~d~g~y~c~a~n~ 302 (516)
-...+.+.. . .....+.|.... +..+... .......+.+.+|.+...|.|++.|.|.
T Consensus 403 p~~~l~~~~---~-~~si~l~W~~p~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~t~Y~~~V~A~~~ 478 (589)
T 3l5h_A 403 PVMDLKAFP---K-DNMLWVEWTTPRESVKKYILEWCVLSDKAPCITDWQQEDGTVHRTYLRGNLAESKCYLITVTPVYA 478 (589)
T ss_dssp CCCSCEEEE---C-SSSEEEECCCCSSCCSCBCCEEEEECSSSCCCEEECCBCSSCCEEECCSCCCSSSEEEEEECBEET
T ss_pred CcceEEEEE---C-CCeEEEEEECCCCCccEEEEEEEECCCCCCCccCcEEeeCCcceEEehhccccCcEEEEEEEEEeC
Confidence 001112221 1 123345553310 1000000 0122335566899999999999999998
Q ss_pred CCCcceeEEEEEecC---CCCCCCCceeeeccCCeeEEEecCCC-CCCCCceeeccccccccccccEEEEcCCeEEEEEE
Q psy7039 303 YGIDMADIEVVVVSK---PGPPTGPIDYTTVTPESVSMSWKPPV-DDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVP 378 (516)
Q Consensus 303 ~g~~~~~~~l~v~~~---p~~p~~p~~~~~~~~~~~~l~W~~p~-~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~ 378 (516)
.|..... .+.+... |..|. .+.+..++.+++.|+|.+|. +..+..|.+|.
T Consensus 479 ~g~g~~~-~~~~~t~~~~P~~pp-~l~~~~~~~~sv~l~W~~~~~~~~~g~i~~Y~------------------------ 532 (589)
T 3l5h_A 479 DGPGSPE-SIKAYLKQAPPSKGP-TVRTKKVGKNEAVLEWDQLPVDVQNGFIRNYT------------------------ 532 (589)
T ss_dssp TEECCCE-EEEEESSCCCCSSCC-CCCEECCCSSCBEEBCCCCCHHHHCSCEEEEE------------------------
T ss_pred CcccCCE-EEEEEeccCCCCCCC-eEEEeecccceEEEEecCCCHHHcCccceeEE------------------------
Confidence 8876543 2333333 32222 27788889999999999852 33344677772
Q ss_pred EeeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEEEEe
Q psy7039 379 FSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVV 447 (516)
Q Consensus 379 ~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~v~ 447 (516)
|.|...+. .............++|.+|.+ +..|.|++.|.|..| +..+..+.++
T Consensus 533 --------v~~~~~~~-----~~~~~~~~~~~~~~~~~~L~p-~t~Y~~~V~A~n~~G-~~~S~~~~~~ 586 (589)
T 3l5h_A 533 --------IFYRTIIG-----NETAVNVDSSHTEYTLSSLTS-DTLYMVRMAAYTDEG-GKDGPEFTFT 586 (589)
T ss_dssp --------ECCBCSSC-----CCCCEEECTTCCBCCBCSCCS-SCCEECCEEEEETTE-EEECCCCEEC
T ss_pred --------EEEEeCCC-----CeEEEEeCCcccEEEecCCCC-CCEEEEEEEEEeCCC-CCCCCCeEEe
Confidence 11111110 001122334445788999999 999999999999999 6555555544
|
| >2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... | Back alignment and structure |
|---|
Probab=99.69 E-value=1.4e-16 Score=141.16 Aligned_cols=163 Identities=16% Similarity=0.198 Sum_probs=122.8
Q ss_pred ceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeecc--------------CCceE
Q psy7039 123 DVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQI--------------GGRAD 188 (516)
Q Consensus 123 ~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~--------------~~~~~ 188 (516)
.+.+.+|+.+.|.|.+. +.|.+.+.|++++..+.. ..|+.
T Consensus 4 ~v~~~~G~~v~L~C~~~--------------------------~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 57 (184)
T 2ny1_B 4 VVLGKKGDTVELTCTAS--------------------------QKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRAD 57 (184)
T ss_dssp EEEEETTSCEEECCBCS--------------------------SSSCCCEEEEETTCCEEEEEETTEEEECSCTTGGGEE
T ss_pred cEEEeCCCCEEEEEEEc--------------------------CCCceEEEEEeCCccceEEecCceEecCChhhCCccc
Confidence 46789999999999999 889999999998753211 12333
Q ss_pred Eee---cCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEEeeceeeeeccccCCceEEEEEEEEccCCCCCceecccc
Q psy7039 189 VQT---TKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVTGTEFTDNNVHEGKAYEYRVSAVNAAGTEKPKISLDA 265 (516)
Q Consensus 189 ~~~---~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~g~p~p~i~W~~ 265 (516)
... ..+..+|.|.+++.+|+|.|+|.+.+..+.....+... .......+.+|+.+.+.|.+ .|.|.|.+.|.+
T Consensus 58 ~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~l~V~~~-~~~~~~~v~~g~~~~l~C~~---~~~p~~~v~W~~ 133 (184)
T 2ny1_B 58 SRRSLWDQGNFPLIIKNLKIEDSDTYICEVEDQKEEVQLLVFGL-TANSDTHLLQGQSLTLTLES---PPGSSPSVQCRS 133 (184)
T ss_dssp CCGGGGGGTBCCEEECSCCGGGCEEEEEEETTEEEEEEEEEEEE-EESSCSEEETTCCEEEEEEC---CTTCCCEEEEEC
T ss_pred cccccccCCeEEEEEecCCHHHCEEEEEEEEcCCCcEEEEEEEe-cCCCCceeecCCCEEEEEEc---CCCCCCEEEEEe
Confidence 321 23356799999999999999999998766443332211 11233467889999999988 677999999976
Q ss_pred cccceEEEEEecceeeEEEccCCCCCceEEEEEEEecCCCcceeEEEEEecCCCC
Q psy7039 266 LIGKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGP 320 (516)
Q Consensus 266 ~~~~~~~~~~~~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~ 320 (516)
..... ......|.|.++..+|+|.|+|.|.|..+.....+.|.|...|.+
T Consensus 134 ~~~~~-----~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~~~~~l~V~~~p~~ 183 (184)
T 2ny1_B 134 PRGKN-----IQGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQKA 183 (184)
T ss_dssp TTSCE-----EEESSEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCCC-
T ss_pred CCCcc-----ccCceEEEEecCCcCCCeEEEEEEEECCceEEEEEEEEEEecCCC
Confidence 43322 235678999999999999999999999988888999999887754
|
| >2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.9e-15 Score=146.91 Aligned_cols=208 Identities=9% Similarity=0.056 Sum_probs=129.8
Q ss_pred CCcEEEeCCCcCCCeEEEEEEEecCCCCCCC--CCCCcceEeccCCCCCccccCcccceEEecCCeEEEEEeeeeccccc
Q psy7039 68 GETSCTVPGLIEGETYQFQVRAVNAAGPGEA--SKPTAPIVAKPKNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYT 145 (516)
Q Consensus 68 ~~~~~~i~~l~~~~~y~~~~~a~n~~g~~~~--s~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~ 145 (516)
...+|.|.+++..|.|.|+|.|.|..+.... ......+.+...+.+|.+. . ....+.+|+.+.|.|.+.
T Consensus 72 ~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~~~~~l~V~~~p~~p~i~-~--~~~~~~~g~~~~l~C~~~------ 142 (327)
T 2wng_A 72 MDFSISISNITPADAGTYYCVKFRKGSPDTEFKSGAGTELSVRAKPSAPVVS-G--PAARATPQHTVSFTCESH------ 142 (327)
T ss_dssp CBCCEEECSCCGGGCEEEEEEEEESSTTCEEEEECCCEEEEEEBCCCCCEEE-C--CSSCBCTTCEEEEEEEEE------
T ss_pred ceeEEEEccCccccCeEEEEEeecCCCcceeEeecCcEEEEEEecCCCceee-c--cccccCCCCEEEEEEEEe------
Confidence 4568999999999999999999997553110 0112233443444455544 1 235678999999999999
Q ss_pred cCccccccccccCccceeecCcCce--eeEEeeCCeeeccCCceEEee-c-C---CeeEEEeccCCCCCCeeEEEEEEcC
Q psy7039 146 KSPLRALGVRANSTKGWVKLSEPFL--NHGWSINGQVCQIGGRADVQT-T-K---SETVLDIPFCSRSDTGHYSLTLENN 218 (516)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~p~~--~i~W~~~~~~~~~~~~~~~~~-~-~---~~~~l~i~~~~~~d~g~Y~c~~~~~ 218 (516)
+.|.+ .+.|++++..+.......... . + ..+.|.|.....+|.|.|+|.+.|.
T Consensus 143 --------------------g~p~~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~d~~g~Y~C~a~n~ 202 (327)
T 2wng_A 143 --------------------GFSPRDITLKWFKNGNELSDFQTNVDPVGESVSYSIHSTAKVVLTREDVHSQVICEVAHV 202 (327)
T ss_dssp --------------------EEBSSCCEEEEEETTEECCCEEEEEECSSCCSCEEEEEEEEEECCTTGGGCEEEEEEECT
T ss_pred --------------------CccCCCcEEEEEECCEEccccccccccccCCCceEEEEEEEEechhcCcCceEEEEEecc
Confidence 76654 899999998886443221111 1 1 1236788877778889999999998
Q ss_pred CCce---EEEEEeec-------eeeeeccccCCceEEEEEEEEccCCC-CCc-eecccccccceEE------EEEecc--
Q psy7039 219 LGTA---TASAHVTG-------TEFTDNNVHEGKAYEYRVSAVNAAGT-EKP-KISLDALIGKRIK------EFVTST-- 278 (516)
Q Consensus 219 ~g~~---~~~~~~~~-------~~~~~~~l~~g~~~~~~~~~~~~~g~-p~p-~i~W~~~~~~~~~------~~~~~~-- 278 (516)
.+.. .....+.. .......+.+|..+.|.|.+ .|. |++ .+.|.+.. ..+. ......
T Consensus 203 ~~~~~~~~~~~~~~~~v~~~P~i~~~~~~~~~G~~v~l~C~~---~g~~p~~~~v~W~k~g-~~l~~~~~~~~~~~~~g~ 278 (327)
T 2wng_A 203 TLQGDPLRGTANLSETIRVPPTLEVTQQPVRAENQVNVTCQV---RKFYPQRLQLTWLENG-NVSRTETASTVTENKDGT 278 (327)
T ss_dssp TSCSCCEEEEEEGGGTBCBCCEEEEEEECCSSTTCCEEEEEE---EEEBSSCEEEEEEETT-EEEEEEECCSCEECTTSC
T ss_pred ccCCCcccceEEeccccCCCCEEEEecCCcCCCCcEEEEEEE---ccccCCCcEEEEEECC-eEccCcccCceEECCCCc
Confidence 7653 22332211 11122237789999999999 564 444 79997532 1111 111111
Q ss_pred ---eeeEEEccCCCCCceEEEEEEEecCCCcce
Q psy7039 279 ---TASLNIKNSVRKDSGIYKIEAKNDYGIDMA 308 (516)
Q Consensus 279 ---~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~ 308 (516)
...|.|..+..+|.|.|+|.|.|..|....
T Consensus 279 ~~~~~~L~i~~~~~~d~G~Y~C~a~N~~~~~~s 311 (327)
T 2wng_A 279 YNWMSWLLVNVSAHRDDVKLTCQVEHDGQPAVS 311 (327)
T ss_dssp EEEEEEEEC-------CCEEEEEEEETTCCCEE
T ss_pred EEEEEEEEEccccccCCCEEEEEEEeCCCCCch
Confidence 145788889999999999999999887543
|
| >3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C* | Back alignment and structure |
|---|
Probab=99.69 E-value=3.3e-16 Score=141.41 Aligned_cols=168 Identities=12% Similarity=0.058 Sum_probs=120.2
Q ss_pred CCccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCcee-eEEeeCCeeeccCCceEEee
Q psy7039 113 APRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLN-HGWSINGQVCQIGGRADVQT 191 (516)
Q Consensus 113 ~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-i~W~~~~~~~~~~~~~~~~~ 191 (516)
.|.|. ..+....+.+|+.+.|.|.+. +.|.+. +.|++++..+...
T Consensus 7 ~p~i~-~~p~~~~v~~G~~v~L~C~~~--------------------------~~p~~~~v~W~k~g~~l~~~------- 52 (204)
T 3sgj_C 7 KAVVF-LEPQWYRVLEKDSVTLKCQGA--------------------------YSPEDQSTQWFHNESLISSQ------- 52 (204)
T ss_dssp BCEEE-EESCCSEEETTCCEEEEEECC--------------------------SSSSCCCEEEEETTEEESCC-------
T ss_pred CCeEE-EcCCCeEEECCCCEEEEEcCC--------------------------CCCCCcEEEEEECCEEcccC-------
Confidence 34444 344457899999999999999 777665 9999999887533
Q ss_pred cCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEEeece----eeeeccccCCceEEEEEEEEccCCCCCceecccccc
Q psy7039 192 TKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVTGT----EFTDNNVHEGKAYEYRVSAVNAAGTEKPKISLDALI 267 (516)
Q Consensus 192 ~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~~~~----~~~~~~l~~g~~~~~~~~~~~~~g~p~p~i~W~~~~ 267 (516)
...|.|.+++.+|+|.|+|.+.|........+.+... ......+.+|+.+.+.|.+. .+.|.+.+.|.+..
T Consensus 53 ---~~~L~i~~v~~~D~G~Y~C~a~n~~~s~~~~l~V~~~p~~~~~~~~~v~~G~~v~L~C~~~--~~~p~~~v~W~k~g 127 (204)
T 3sgj_C 53 ---ASSYFIDAATVDDSGEYRCQTQLSTLSDPVQLEVHIGWLLLQAPRWVFKEEDPIHLRCHSW--KNTALHKVTYLQNG 127 (204)
T ss_dssp ---SSEEEESSCCGGGCEEEEEEETTSBCCCCEEEEEECSSEEEECSCSEEETTCCEEEEEEEG--GGCCCEEEEEEETT
T ss_pred ---ccEEEEecccccCCEEEEEEeCCCcccccEEEEEecCceEecCCceeEeCCCcEEEEEEec--CCCCCceEEEEECC
Confidence 2689999999999999999998865555444443321 11234567899999999882 34466889996532
Q ss_pred cceEEEEEecceeeEEEccCCCCCceEEEEEEEec-CCCcceeEEEEEecCCCCCC
Q psy7039 268 GKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKND-YGIDMADIEVVVVSKPGPPT 322 (516)
Q Consensus 268 ~~~~~~~~~~~~~~l~i~~l~~~d~g~y~c~a~n~-~g~~~~~~~l~v~~~p~~p~ 322 (516)
.. +........|.|.++..+|+|.|+|.|.|. .+..+..+.|.|...+..|.
T Consensus 128 ~~---~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~~~~~s~~~~l~V~~~~~~P~ 180 (204)
T 3sgj_C 128 KG---RKYFHHNSDFYIPKATLKDSGSYFCRGLVGSKNVSSETVQITITQGLAVST 180 (204)
T ss_dssp EE---EEEEEECCCEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC------
T ss_pred cE---eecccCCceEEECcCCcccCEEEEEEEEeCCCceecCcEEEEEeCcCCCCc
Confidence 22 122334678999999999999999999994 55567778888887766553
|
| >1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY acidic protein fold, fibronectin type III fold, hormone- growth factor complex; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.69 E-value=3.5e-14 Score=151.75 Aligned_cols=319 Identities=13% Similarity=0.110 Sum_probs=173.8
Q ss_pred CCCCCCcceEEEee--eCC---eeEEEecCCCCCCCCceeceEEEEEeC-C------C-CeEEeEEeecCCcEEEeCCCc
Q psy7039 12 DEPGKPTDLEATDW--DKD---HVDLQWTPPISDGGSPITGYVVEMKDK-T------G-NWEKAVVVPAGETSCTVPGLI 78 (516)
Q Consensus 12 ~~p~~p~~l~~~~~--~~~---~v~l~W~~p~~~~~~~i~~Y~v~~~~~-~------~-~~~~~~~~~~~~~~~~i~~l~ 78 (516)
.+|++|.+|++..+ +++ +|.|+|.+|. +.+++|.+|.|+|+.. + . .|... .+....++++|.+|.
T Consensus 265 ~pp~~P~~l~~~~~~~~~~g~~sv~l~W~pP~-~~~g~i~~Y~V~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~l~~L~ 342 (680)
T 1zlg_A 265 SAPPAPANLRLANSTVNSDGSVTVTIVWDLPE-EPDIPVHHYKVFWSWMVSSKSLVPTKKKRRK-TTDGFQNSVILEKLQ 342 (680)
T ss_pred CCCCCCCceEeeeeeecCCCceEEEEEecCCC-CCCCceeEEEEEEEecccccccCCccceEEE-EEcCCeeEEEeCCCC
Confidence 58999999999988 788 9999999985 3457899999999821 1 1 34443 344456899999999
Q ss_pred CCCeEEEEEEEecCCCCCCCCCCCcceEeccCCCCCccccCcccceEEecC--CeEEE---------EEeeeeccccccC
Q psy7039 79 EGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAPRIDRSTLNDVKIKAG--QSFSF---------DVKEFRELSYTKS 147 (516)
Q Consensus 79 ~~~~y~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g--~~~~l---------~C~~~~~~~~~~~ 147 (516)
+++.|.|+|+|.|..|.+.++.....+...+...+|. +..+.+..- ..+.| ...+. +
T Consensus 343 p~t~Y~~~V~A~n~~G~g~~S~~~~~v~~~T~~~~P~-----p~~l~~~~~s~tsi~lp~~~~~~~~~l~W~-------~ 410 (680)
T 1zlg_A 343 PDCDYVVELQAITYWGQTRLKSAKVSLHFTSTHATNN-----KEQLVKTRKGGIQTQLPFQRRRPTRPLEVG-------A 410 (680)
T ss_pred CCCEEEEEEEEEECCCcCCCCCCceeEEEECCCCCCC-----ccccccccccCccccccccccCCCcccccc-------C
Confidence 9999999999999999988776644455444444442 112222111 11211 01222 0
Q ss_pred ccccccccccCccceeecCcC---ceeeEEeeCCeeeccC-CceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCceE
Q psy7039 148 PLRALGVRANSTKGWVKLSEP---FLNHGWSINGQVCQIG-GRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTAT 223 (516)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~p---~~~i~W~~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~ 223 (516)
|.. .+......+.|-..+.+ .-.+.|.......... .............+.|.++.....+.++..+.|..|...
T Consensus 411 P~~-~~~~~~y~v~w~~~~~~~v~~Y~V~w~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~A~n~~G~s~ 489 (680)
T 1zlg_A 411 PFY-QDGQLQVKVYWKKTEDPTVNRYHVRWFPEACAHNRTTGSEASSGMTHENYIILQDLSFSCKYKVTVQPIRPKSHSK 489 (680)
T ss_pred Ccc-cCCcceEEEEEeCCCCCccceEEEEEeeeecccCCCCcceeeeeeccCceEEecCCCCCCeEEEEEEEecCCCCCC
Confidence 100 00111222222221111 1122232110000000 000111123345778888988888888888888877321
Q ss_pred EEE---Eeec---------eeeee--c------c-ccCCceEE--EEEEEEccCCCCCceecccccc----c--ceEEEE
Q psy7039 224 ASA---HVTG---------TEFTD--N------N-VHEGKAYE--YRVSAVNAAGTEKPKISLDALI----G--KRIKEF 274 (516)
Q Consensus 224 ~~~---~~~~---------~~~~~--~------~-l~~g~~~~--~~~~~~~~~g~p~p~i~W~~~~----~--~~~~~~ 274 (516)
... .... ..+.. . . +.+-..+. +.+.. .... ..+.|.... + ..+.+.
T Consensus 490 ~~~~~f~T~~~~~~~~~~~~~v~~~~~~~P~~~~v~~~P~~l~~~v~v~~---~~~t-i~lsW~pP~~~~ng~I~gY~V~ 565 (680)
T 1zlg_A 490 AEAVFFTTPPCSALKGKSHKPIGCLGEAGHVLSKVLAKPENLSASFIVQD---VNIT-GHFSWKMAKANLYQPMTGFQVT 565 (680)
T ss_pred ccccceeCCCccccccCCccccccCCCCccccccccCCccccceeEEEec---cCce-EEEEecCCCCCCCCCceeEEEE
Confidence 100 0000 00000 0 0 00001100 12211 1111 455564321 0 011111
Q ss_pred E-----------------------ecceeeEEEccCCCCCceEEEEEEEecCCCcceeEEEEEecCCCCCCCC--ceeee
Q psy7039 275 V-----------------------TSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGP--IDYTT 329 (516)
Q Consensus 275 ~-----------------------~~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~p~~p--~~~~~ 329 (516)
. ......+.|.+|.+...|.+++.|.|..|.+.. ..+.+.....+|..| +.+..
T Consensus 566 y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~A~n~~G~G~~-~~~~~~T~~~~P~~P~~l~v~~ 644 (680)
T 1zlg_A 566 WAEVTTESRQNSLPNSIISQSQILPSDHYVLTVPNLRPSTLYRLEVQVLTPGGEGPA-TIKTFRTPELPPSSAHRSHLKH 644 (680)
T ss_pred EEEccCCCccccccceeeecccccCCcccEEEecCCCCCceEEEEEEEEcCCCcCCC-cceEEECCCCCCCCCCCCeEEe
Confidence 1 123457889999999999999999999887765 444555544444433 45544
Q ss_pred ccCCeeEEEecCCCCCCCCceeecc
Q psy7039 330 VTPESVSMSWKPPVDDGGTPITGAP 354 (516)
Q Consensus 330 ~~~~~~~l~W~~p~~~~~~~i~~y~ 354 (516)
.. .|+|++|...+|.+|.+|.
T Consensus 645 ~~----~l~W~pP~~~~G~~I~~~~ 665 (680)
T 1zlg_A 645 RH----PHHYKPSPERYGKPIPNPL 665 (680)
T ss_pred cc----ceeECCCCCCCCCccceee
Confidence 33 8999999999999999883
|
| >1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.68 E-value=3.5e-16 Score=141.64 Aligned_cols=171 Identities=21% Similarity=0.315 Sum_probs=125.1
Q ss_pred ccccCCceEEEEEEEEccCCCCCceecccccccceEEEE-------------EecceeeEEEccCCCCCceEEEEEEEec
Q psy7039 236 NNVHEGKAYEYRVSAVNAAGTEKPKISLDALIGKRIKEF-------------VTSTTASLNIKNSVRKDSGIYKIEAKND 302 (516)
Q Consensus 236 ~~l~~g~~~~~~~~~~~~~g~p~p~i~W~~~~~~~~~~~-------------~~~~~~~l~i~~l~~~d~g~y~c~a~n~ 302 (516)
..+.+|+.+.|.|.+ .|.|.+.+.|.+......... .......|.|.+++..|+|.|+|.+.|.
T Consensus 11 ~~v~~G~~v~L~C~~---~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~L~i~~v~~~D~G~Y~C~~~~~ 87 (212)
T 1f97_A 11 VQVPENESIKLTCTY---SGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGITFSSVTRKDNGEYTCMVSEE 87 (212)
T ss_dssp EEEETTCCEEEECEE---ESCSSEEEEEEEEETTEEEEEEETTEECGGGTTTEEEETTEEEESCCCGGGCEEEEEEEEET
T ss_pred eEEEcCCCEEEEeEe---CCCCCcEEEEEECCCceeeEEecCCcccccccCcEEeeceeEEEcccCcccCeEEEEEEEcc
Confidence 346789999999998 577899999976332211000 0112278999999999999999999998
Q ss_pred CC--CcceeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEE-E
Q psy7039 303 YG--IDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVP-F 379 (516)
Q Consensus 303 ~g--~~~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~-~ 379 (516)
.| .....+.|.|..+|..+.. .....+..|+.+.|.|. +
T Consensus 88 ~g~~~~~~~~~l~V~~~p~~~~~--------------------------------------~~~~~~~~g~~~~l~C~~~ 129 (212)
T 1f97_A 88 GGQNYGEVSIHLTVLVPPSKPTI--------------------------------------SVPSSVTIGNRAVLTCSEH 129 (212)
T ss_dssp TSSSEEEEEEEEEEEBCCCCCEE--------------------------------------ECCSEEETTSCEEEEEECS
T ss_pred CCCcccEEEEEEEEEcCCCCccc--------------------------------------CCccccCCCCeEEEEEEcc
Confidence 77 3455677777776654321 12246789999999999 7
Q ss_pred eeecCCceEEEECCe-ecCCCCc-------eEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCce--eEEEEEEEec
Q psy7039 380 SGRPKPTPIWTVNGD-EVSPDGR-------IKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSD--SASCKVYVVD 448 (516)
Q Consensus 380 ~g~p~~~i~W~~~~~-~l~~~~~-------~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~--s~s~~l~v~~ 448 (516)
.+.|.+.+.|++++. .+..... ...........|.|.++.. .|.|.|+|.|.|..|.. +..+.|.|..
T Consensus 130 ~~~p~~~i~W~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~-~d~G~Y~C~a~n~~g~~~~s~~~~l~V~~ 207 (212)
T 1f97_A 130 DGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTA-FDSGEYYCQAQNGYGTAMRSEAAHMDAVE 207 (212)
T ss_dssp CCBSCCEEEEEETTEESBC-----CBSCSSSCEEECTTTCCEEESSCCG-GGCEEEEEEEECSSSCCEECCCEEEEEES
T ss_pred cCcCCCEEEEEeCCcccccccccccccccCceeEecCCCceEEEEecCh-hhCcEEEEEEccccCCccccceEEEEEEE
Confidence 999999999999998 7754322 1122333445799999999 99999999999999987 5667777764
|
| >3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D | Back alignment and structure |
|---|
Probab=99.68 E-value=1.4e-15 Score=147.17 Aligned_cols=251 Identities=12% Similarity=0.065 Sum_probs=147.9
Q ss_pred eCCeeEEEecCCCCCCCCceeceEEEEEeCCCCeEEeEEeecCCcEEEeCCCcCCCeEEEEEEEecCCCCCCCCC--CCc
Q psy7039 26 DKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVVVPAGETSCTVPGLIEGETYQFQVRAVNAAGPGEASK--PTA 103 (516)
Q Consensus 26 ~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~~~a~n~~g~~~~s~--~~~ 103 (516)
....+.|.+.... . ... +.|...+...............|.|.+++..|.|.|+|.|.|..+....+. ...
T Consensus 37 ~G~~v~L~C~~~~---~--~~~--~~W~k~g~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~~~~~~~~~~~s~~~ 109 (316)
T 3vh8_G 37 RGGHVTLRCHYRH---R--FNN--FMLYKEDRIHIPIFHGRIFQESFNMSPVTTAHAGNYTCRGSHPHSPTGWSAPSNPV 109 (316)
T ss_dssp TTSCEEEEEEBTT---B--CCS--EEEEESSCSSSCHHHHCCBSSCEEECSCCGGGCEEEEEEEBCSSSSSSBCCCCCCE
T ss_pred CCCCEEEEEEccC---C--Cce--EEEEeCCCccceeecCCcceEEEEECCCCcccCeEEEEEEEcCCCCcceecCCCcE
Confidence 5667889888742 1 122 234444431100001112467899999999999999999987544322221 223
Q ss_pred ceEeccCCCCCccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeecc
Q psy7039 104 PIVAKPKNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQI 183 (516)
Q Consensus 104 ~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~ 183 (516)
.+.+.....+|.+. ..+.. .+.+|+.+.|.|.+. + +.+.+.|++++..+..
T Consensus 110 ~l~V~~~~~~p~~~-~~~~~-~v~~G~~v~L~C~~~--------------------------~-~~~~~~w~k~g~~~~~ 160 (316)
T 3vh8_G 110 VIMVTGNHRKPSLL-AHPGP-LVKSGERVILQCWSD--------------------------I-MFEHFFLHKEGISKDP 160 (316)
T ss_dssp EEEEECSSCCCEEE-EESCS-EEETTCCEEEEEEES--------------------------S-CCSEEEEEETTCCSCC
T ss_pred EEEEecCCCCCeEE-ecCCC-ccCCCCeEEEEEcCC--------------------------C-CCcEEEEEECCCcccc
Confidence 34443333456655 33333 388999999999987 4 4568899998876643
Q ss_pred CCce-EEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCc-------eEEEEEeec----eee---eeccccCCceEEEEE
Q psy7039 184 GGRA-DVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGT-------ATASAHVTG----TEF---TDNNVHEGKAYEYRV 248 (516)
Q Consensus 184 ~~~~-~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~-------~~~~~~~~~----~~~---~~~~l~~g~~~~~~~ 248 (516)
.... ..........|.|.+++.+|+|.|+|.+.|..|. ....+.+.. ..+ ....+.+|+.+.|.|
T Consensus 161 ~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~s~~~~l~V~~~~~~p~i~~~~~~~v~~G~~v~L~C 240 (316)
T 3vh8_G 161 SRLVGQIHDGVSKANFSIGPMMLALAGTYRCYGSVTHTPYQLSAPSDPLDIVVTGPYEKPSLSAQPGPKVQAGESVTLSC 240 (316)
T ss_dssp EEEECEEETTEEEEEEEECSCCGGGCEEEEEEEECTTCTTBCCCCCCCEEEEEECSSCCCEEEEESCSCCCTTSCCEEEE
T ss_pred ceeeeeecCCCceEEEEECCCChhhCceEEEEEecCCCCccccCCCCCEEEEecCCCCCCeEEeCCCCeecCCCcEEEEE
Confidence 2211 1111234578999999999999999999998763 222232221 111 122567899999999
Q ss_pred EEEccCCCCCceecccccccceEE-E---EE--ecceeeEEEccCCCCCceEEEEEEEecCCC-----cceeEEEEEecC
Q psy7039 249 SAVNAAGTEKPKISLDALIGKRIK-E---FV--TSTTASLNIKNSVRKDSGIYKIEAKNDYGI-----DMADIEVVVVSK 317 (516)
Q Consensus 249 ~~~~~~g~p~p~i~W~~~~~~~~~-~---~~--~~~~~~l~i~~l~~~d~g~y~c~a~n~~g~-----~~~~~~l~v~~~ 317 (516)
.+ . .+.+.+.|.+....... . .. ......|.|.+++ |+|.|+|.|.|..+. .+..+.|.|...
T Consensus 241 ~~---~-~~~~~~~W~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~--D~G~Y~C~a~n~~~~~~~s~~S~~~~l~V~g~ 314 (316)
T 3vh8_G 241 SS---R-SSYDMYHLSREGGAHERRLPAVRKVNRTFQADFPLGPAT--HGGTYRCFGSFRHSPYEWSDPSDPLLVSVTGN 314 (316)
T ss_dssp EE---S-SCCSEEEEEETTSSCCEEEECEECTTSCEEEEEECC-------CEEEEEEEBTTBTTEECCCCCCEEC-----
T ss_pred EC---C-CCCcEEEEEECCCcCCCceeceeccCCceeEEEEcCCcC--CCEEEEEEeecCCCchhccCCCCcEEEEEeCC
Confidence 98 3 36788999653221111 1 01 1123689999999 999999999997653 344566666654
Q ss_pred C
Q psy7039 318 P 318 (516)
Q Consensus 318 p 318 (516)
|
T Consensus 315 p 315 (316)
T 3vh8_G 315 P 315 (316)
T ss_dssp -
T ss_pred C
Confidence 4
|
| >1i1r_A GP130, interleukin-6 receptor beta chain; cytokine/receptor complex, GP130; 2.40A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1p9m_A | Back alignment and structure |
|---|
Probab=99.68 E-value=2.5e-15 Score=144.58 Aligned_cols=223 Identities=11% Similarity=0.088 Sum_probs=140.9
Q ss_pred ccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecC-------cCceeeEEeeCCeeeccCCceEEeecC
Q psy7039 121 LNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLS-------EPFLNHGWSINGQVCQIGGRADVQTTK 193 (516)
Q Consensus 121 ~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~p~~~i~W~~~~~~~~~~~~~~~~~~~ 193 (516)
+.+..+..|+++.|.|.+. + .|.+.|.|++++..+... ++.+. .+
T Consensus 11 P~~~~v~~G~~v~l~C~~~--------------------------~~~~~~~~~p~p~i~W~~~g~~i~~~-~~~~~-~~ 62 (303)
T 1i1r_A 11 PESPVVQLHSNFTAVCVLK--------------------------EKCMDYFHVNANYIVWKTNHFTIPKE-QYTII-NR 62 (303)
T ss_dssp SSSCEEETTCCEEEEEEEC--------------------------HHHHHHHTCCGGGEEEEETTEECCGG-GCEEE-ET
T ss_pred cCCceEeCCCCEEEEEEEC--------------------------CccccccCCChhheEEEECCEECChh-heeee-CC
Confidence 3457789999999999998 5 378999999999887543 33332 33
Q ss_pred CeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEEeeceeeeeccccCCceEEEEEEEEccCCCCCceecccccccceEEE
Q psy7039 194 SETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVTGTEFTDNNVHEGKAYEYRVSAVNAAGTEKPKISLDALIGKRIKE 273 (516)
Q Consensus 194 ~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~g~p~p~i~W~~~~~~~~~~ 273 (516)
..+.|.|.++...+ |.|.|.+.+. |.....
T Consensus 63 ~~~~L~i~~~~~~~-g~Y~C~a~~~-g~~~~~------------------------------------------------ 92 (303)
T 1i1r_A 63 TASSVTFTDIASLN-IQLTCNILTF-GQLEQN------------------------------------------------ 92 (303)
T ss_dssp TEEEEEECSCCCSE-EEEEEEEEET-TTEEEE------------------------------------------------
T ss_pred cEEEEEEcCcCCCc-eEEEEecccC-CCcceE------------------------------------------------
Confidence 35577788777763 7788877542 211100
Q ss_pred EEecceeeEEEccCCCCCceEEEEEEEecCCCcceeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeec
Q psy7039 274 FVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGA 353 (516)
Q Consensus 274 ~~~~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y 353 (516)
...+.+.+..+|.+|.. +.+...+..++.|+|.+|.+.+. +++|
T Consensus 93 ---------------------------------~~~~~l~v~~~P~~P~~-l~~~~~~~~~v~l~W~~~~~~~~--~~~Y 136 (303)
T 1i1r_A 93 ---------------------------------VYGITIISGLPPEKPKN-LSCIVNEGKKMRCEWDGGRETHL--ETNF 136 (303)
T ss_dssp ---------------------------------EEEEEEEEECCCCCCEE-EEEEEETTSCCEEEEECCSCCSS--CCEE
T ss_pred ---------------------------------EEEEEEeccCCCCCCee-eEEEECCCCcEEEEccCCCCCCC--CcCE
Confidence 01122334444444433 55566667889999999877542 3455
Q ss_pred cccccccccccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCc-eecCCceEEEEEEE
Q psy7039 354 PKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSA-KRATDSGSYTIQLV 432 (516)
Q Consensus 354 ~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~-~~~~~~g~y~c~a~ 432 (516)
. +.+. ..+... ... .........+.|.++ .+ ...|.|+|.|.
T Consensus 137 ~--------------------v~~~------------~~~~~~---~~~-~~~~~~~~~~~i~~L~~p-~t~Y~f~V~A~ 179 (303)
T 1i1r_A 137 T--------------------LKSE------------WATHKF---ADC-KAKRDTPTSCTVDYSTVY-FVNIEVWVEAE 179 (303)
T ss_dssp E--------------------EEEE------------ETTEEC---CCE-ECCSSCTTEEECSSCCCT-TSCEEEEEEEE
T ss_pred E--------------------EEEE------------ecCCCC---ccC-CCcCCCceEEEECCcCcc-cccEEEEEEEE
Confidence 1 1111 111000 000 001122346889999 88 99999999999
Q ss_pred cCCCceeE-EEEEEEe--cCCCCCCCCcccccc--cCCeEEEEeeCCCCCCCCCcceEEEEEEecCCCc
Q psy7039 433 NTVGSDSA-SCKVYVV--DKPSPPQGPLDVSDI--TPESCSLSWKPPLDDGGSPITNYVVEKYESATGV 496 (516)
Q Consensus 433 n~~G~~s~-s~~l~v~--~~p~~P~~~l~~~~~--~~~~~~l~W~~p~~~~~~~i~~Y~v~~~~~~~~~ 496 (516)
|..|.... ...+... .+|.+| ..+.+..+ +.+++.|+|++|.. .++.+.+|.|+|+..+...
T Consensus 180 N~~G~~~s~~~~~~~~~~~~p~pP-~~~~v~~~~~~~~sv~l~W~~p~~-~~~~i~~Y~v~y~~~~~~~ 246 (303)
T 1i1r_A 180 NALGKVTSDHINFDPVYKVKPNPP-HNLSVINSEELSSILKLTWTNPSI-KSVIILKYNIQYRTKDAST 246 (303)
T ss_dssp ETTEEEECCCEEECGGGGEECCCC-EEEEEECCSSSSSCEEEEEECCGG-GGTSCEEEEEEEEETTCSS
T ss_pred cCCCCcccCCEEECHHHeEecCCC-cceEEEEecCCCCEEEEEECCCCC-CCcccEEEEEEEEeCCCCC
Confidence 99998642 2222221 357777 66776544 67899999999864 4568999999999986544
|
| >3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.1e-15 Score=139.46 Aligned_cols=78 Identities=17% Similarity=0.304 Sum_probs=64.8
Q ss_pred ccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCc-eeEE
Q psy7039 363 RDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGS-DSAS 441 (516)
Q Consensus 363 ~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~-~s~s 441 (516)
....+..|+.+.|.|.+.+.|.+.+.|++++..+..... ..|.|.++.. .|.|.|+|.|.|..|. .+..
T Consensus 126 ~~~~v~~G~~v~L~C~~~g~p~~~v~W~~~~~~~~~~~~---------~~L~i~~v~~-~d~G~Y~C~a~n~~g~~~s~~ 195 (218)
T 3k0w_A 126 TSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETK---------KLYMVPYVDL-EHQGTYWCHVYNDRDSQDSKK 195 (218)
T ss_dssp CCEEECTTCCEEEECEEEBSSCCEEEEEETTEECTTCCS---------SEEEESSCCG-GGCEEEEEEEECSSCEEECCC
T ss_pred CceeecCCCcEEEEEEecccCCCeEEEEECCEECCCCCC---------CEEEEeecCh-hcCEEEEEEEEcCCCCceeee
Confidence 446788999999999999999999999999988754322 3699999999 9999999999999887 6667
Q ss_pred EEEEEecCC
Q psy7039 442 CKVYVVDKP 450 (516)
Q Consensus 442 ~~l~v~~~p 450 (516)
+.|.|...+
T Consensus 196 ~~l~V~~~~ 204 (218)
T 3k0w_A 196 VEIIIDELN 204 (218)
T ss_dssp EEEEECC--
T ss_pred EEEEEeCCc
Confidence 788886543
|
| >1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.7e-14 Score=149.16 Aligned_cols=304 Identities=15% Similarity=0.130 Sum_probs=154.2
Q ss_pred cccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecC--cCceeeEEeeC-Ce-eec--cCCceEEeec-
Q psy7039 120 TLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLS--EPFLNHGWSIN-GQ-VCQ--IGGRADVQTT- 192 (516)
Q Consensus 120 ~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~p~~~i~W~~~-~~-~~~--~~~~~~~~~~- 192 (516)
.+..+.+.+|+.+.|.|.+.+ + +. ....+.+.|++.. .....+..... +. ... ...|+.+..+
T Consensus 6 qp~~v~v~~G~~v~L~C~~~~---~---~~----~~~~~~v~W~rq~~g~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~ 75 (512)
T 1zvo_C 6 ESGPGLVKPSETLSLTCIVSG---G---PI----RRTGYYWGWIRQPPGKGLEWIGGVYYTGSIYYNPSLRGRVTISVDT 75 (512)
T ss_pred CCCCEEEcCCCCEEEEEEEcc---c---cc----CCCCeeEEEEEeCCCCCcEEEEEEecCCCEEECCccCCceEEEecC
Confidence 345688999999999999981 0 00 0001334444431 11101111110 00 011 1256665532
Q ss_pred -CCeeEEEeccCCCCCCeeEEEEEEcCCC----------c-----eEEEEEeec-----ee-eeecc----ccCCceEEE
Q psy7039 193 -KSETVLDIPFCSRSDTGHYSLTLENNLG----------T-----ATASAHVTG-----TE-FTDNN----VHEGKAYEY 246 (516)
Q Consensus 193 -~~~~~l~i~~~~~~d~g~Y~c~~~~~~g----------~-----~~~~~~~~~-----~~-~~~~~----l~~g~~~~~ 246 (516)
....+|.|.+++.+|+|.|.|.+.+..+ . ....+.+.. .. +.... ...+..+.+
T Consensus 76 ~~~~~sL~I~~v~~~Dsg~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~~~~~v~L 155 (512)
T 1zvo_C 76 SRNQFSLNLRSMSAADTAMYYCARGNPPPYYDIGTGSDDGIDVWGQGTTVHVSSAPTKAPDVFPIISGCRHPKDNSPVVL 155 (512)
T ss_pred CCCEEEEEECcCCHHHCEEEEEEEECCCCccccccccccccccccCceEEEecccCCcCCeEEeccCCcccccCCCeEEE
Confidence 3457999999999999999999987642 0 111122211 11 11110 123578899
Q ss_pred EEEEEccCCC-CCc-eecccccccceE-E----EEE-ec---ceeeEEEccCCCCCceEEEEEEEecCCCcceeE-----
Q psy7039 247 RVSAVNAAGT-EKP-KISLDALIGKRI-K----EFV-TS---TTASLNIKNSVRKDSGIYKIEAKNDYGIDMADI----- 310 (516)
Q Consensus 247 ~~~~~~~~g~-p~p-~i~W~~~~~~~~-~----~~~-~~---~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~~~----- 310 (516)
.|.+ .|. |.| .+.|.+...... . ... .+ ....|.|...... .|.|+|.|.|..+......
T Consensus 156 ~C~~---~g~~P~p~~v~W~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~-~g~ytC~v~n~~~~~~~~~~~~~~ 231 (512)
T 1zvo_C 156 ACLI---TGYHPTSVTVTWYMGTQSQPQRTFPEIQRRDSYYMTSSQLSTPLQQWR-QGEYKCVVQHTASKSKKEIFRWPE 231 (512)
T ss_pred EEEE---EeeecCceEEEEEcCcccCceEecCceecCCCCEEEEEEEEEcHHHcC-CceEEEEEEeCCCCceEEEecCCC
Confidence 9998 454 655 899976322110 0 000 01 1235778777766 8999999999988755433
Q ss_pred ------EEEEecCCCCCCCCc-eeee-------ccCCeeEEEecCCC---CCCCCceee-----ccccccccccccEEEE
Q psy7039 311 ------EVVVVSKPGPPTGPI-DYTT-------VTPESVSMSWKPPV---DDGGTPITG-----APKITSDLSIRDMTVL 368 (516)
Q Consensus 311 ------~l~v~~~p~~p~~p~-~~~~-------~~~~~~~l~W~~p~---~~~~~~i~~-----y~~~~~~~~~~~~~v~ 368 (516)
.+.+..+|... ..+ .++. -.-.+...+|.... .+.+..|.. ..+......+....+.
T Consensus 232 ~~~~~~~v~l~~pp~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~p~v~~~~p~~~~~~ 310 (512)
T 1zvo_C 232 SPKAQASSVPTAQPQAE-GSLAKATTAPATTRNTGRGGEEKKKEKEKEEQEERETKTPECPSHTQPLGVYLLTPAVQDLW 310 (512)
T ss_pred CCCcCCEEEEeCCCchh-ccccccccCchhhccCcccccceeccCCcccccccCcccccCCCCCCCCEEEEECCChHHhc
Confidence 12222111100 000 0000 00000011221100 000000000 0000000111222356
Q ss_pred cCCeEEEEEEEeeecCC--ceEEEECCeecCCCCce-EEEEcCC-----eEEEEEcCceecCCceEEEEEEEcCCCcee
Q psy7039 369 AGEEFTITVPFSGRPKP--TPIWTVNGDEVSPDGRI-KFETSEN-----QTIYRNKSAKRATDSGSYTIQLVNTVGSDS 439 (516)
Q Consensus 369 ~g~~~~l~C~~~g~p~~--~i~W~~~~~~l~~~~~~-~~~~~~~-----~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s 439 (516)
.|+.+.|.|.+.|..++ .|.|++++..+...... ......+ .+.|.|..+.. .|.|.|+|.|.|..+...
T Consensus 311 ~g~~~~L~C~v~g~~P~~~~i~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~-~d~g~y~C~a~n~~~~~~ 388 (512)
T 1zvo_C 311 LRDKATFTCFVVGSDLKDAHLTWEVAGKVPTGGVEEGLLERHSNGSQSQHSRLTLPRSLW-NAGTSVTCTLNHPSLPPQ 388 (512)
T ss_pred cCCceEEEEEEeceECCCeEEEEEECCEeccCceeccceecCCCCeEEEEEEEEEchHHh-cCCCeEEEEEEeCCCCCC
Confidence 79999999999886443 89999999875421100 0111111 24689988888 899999999999987653
|
| >1fnf_A Fibronectin; RGD, extracellular matrix, cell adhesion protein; 2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1mfn_A 2mfn_A 2ck2_A | Back alignment and structure |
|---|
Probab=99.67 E-value=7.4e-14 Score=138.01 Aligned_cols=81 Identities=20% Similarity=0.396 Sum_probs=66.1
Q ss_pred CCCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCC--CeEEeEEeecCCcEEEeCCCcCCCeEEEEEEEec
Q psy7039 14 PGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTG--NWEKAVVVPAGETSCTVPGLIEGETYQFQVRAVN 91 (516)
Q Consensus 14 p~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~--~~~~~~~~~~~~~~~~i~~l~~~~~y~~~~~a~n 91 (516)
|.+|.+|.+..++++++.|+|.+|. +..+.+|+|+++..++ .|... .......++.|.+|.+++.|.|+|+|.|
T Consensus 95 ~~~p~~l~~~~~~~~si~l~W~~p~---~~~~~~Y~v~~~~~~~~~~~~~~-~~~~~~~~~~i~~L~p~t~Y~~~V~a~~ 170 (368)
T 1fnf_A 95 VPPPTDLRFTNIGPDTMRVTWAPPP---SIDLTNFLVRYSPVKNEEDVAEL-SISPSDNAVVLTNLLPGTEYVVSVSSVY 170 (368)
T ss_dssp CCCCEEEEEESCCSSCEEEEEECCT---TCCCSEEEEEEEETTCTTCCEEE-EECTTCCEEEECSCCTTCEEEEEEEEEE
T ss_pred CcCCceeEEEEcCCCeEEEEeeCCC---CCCCcEEEEEEEECCCCCccEEE-EcCCCcceEEecCCCCCCEEEEEEEEEe
Confidence 3489999999899999999999973 2468999999998554 45443 3345788999999999999999999999
Q ss_pred CCCCCCC
Q psy7039 92 AAGPGEA 98 (516)
Q Consensus 92 ~~g~~~~ 98 (516)
..|.+.+
T Consensus 171 ~~g~s~~ 177 (368)
T 1fnf_A 171 EQHESTP 177 (368)
T ss_dssp TTEECCC
T ss_pred CCCCCCC
Confidence 8886543
|
| >1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G | Back alignment and structure |
|---|
Probab=99.67 E-value=2e-16 Score=142.95 Aligned_cols=81 Identities=15% Similarity=0.253 Sum_probs=61.8
Q ss_pred EEEEcCCeEEEEEEE-eeecCCceEEEECCeecCCCCce-------EEEEcCCeEEEEEcCceecCCceEEEEEEEcCCC
Q psy7039 365 MTVLAGEEFTITVPF-SGRPKPTPIWTVNGDEVSPDGRI-------KFETSENQTIYRNKSAKRATDSGSYTIQLVNTVG 436 (516)
Q Consensus 365 ~~v~~g~~~~l~C~~-~g~p~~~i~W~~~~~~l~~~~~~-------~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G 436 (516)
..+..|+.+.|.|.+ .+.|.+.+.|++++..+...... ..........|.|.++.. .|.|.|+|.|.|..|
T Consensus 117 ~~~~~g~~~~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~-~d~G~Y~C~a~n~~g 195 (209)
T 1nbq_A 117 SSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSA-SDTGEYSCEARNGYG 195 (209)
T ss_dssp SEEETTSCEEECCCCCSCBSCCEEEEEETTCCCCSCSSSSSSCTTCCCCCCTTTCCEEESSCCG-GGCCCEEEEEECSSS
T ss_pred cceecCCEEEEEEeCCCCCCCceeEEEECCeeCCCccccceeeeccceEEcCCcceEEEEeccc-cCCeEEEEEEeCCcC
Confidence 357889999999997 89999999999999877543221 111122345799999999 999999999999999
Q ss_pred ce--eEEEEEEE
Q psy7039 437 SD--SASCKVYV 446 (516)
Q Consensus 437 ~~--s~s~~l~v 446 (516)
.. +..+.|.|
T Consensus 196 ~~~~s~~v~l~V 207 (209)
T 1nbq_A 196 TPMTSNAVRMEA 207 (209)
T ss_dssp CCEECCCBCCEE
T ss_pred cccccccEEEEE
Confidence 87 44444544
|
| >3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.67 E-value=2.7e-15 Score=132.76 Aligned_cols=166 Identities=14% Similarity=0.123 Sum_probs=121.1
Q ss_pred eccccCCceEEEEEEEEccCCCCCc--eecccccccceEEE-EEecceeeEEEccCCCCCceEEEEEEEecCCCcceeEE
Q psy7039 235 DNNVHEGKAYEYRVSAVNAAGTEKP--KISLDALIGKRIKE-FVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIE 311 (516)
Q Consensus 235 ~~~l~~g~~~~~~~~~~~~~g~p~p--~i~W~~~~~~~~~~-~~~~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~~~~ 311 (516)
...+.+|+.+.|.|.+ .|.+.| .+.|.+.. ..... ........|.|. +..|+|.|+|.|.| .....+.
T Consensus 7 ~~~v~~G~~v~l~C~~---~~~~~p~~~~~W~k~~-~~l~~~~~~~~~~~l~i~--~~~d~G~Y~C~~~n---~~~~~~~ 77 (184)
T 3b5h_A 7 TTVEDLGSKILLTCSL---NDSATEVTGHRWLKGG-VVLKEDALPGQKTEFKVD--SDDQWGEYSCVFLP---EPMGTAN 77 (184)
T ss_dssp EEEEEETTEEEEEEEE---ESCSSCCCEEEEESSS-EEEECTTCCCSEEEEEEC--GGGCCEEEEEEEES---TTSCEEE
T ss_pred EEEEecCCCEEEEEEC---CCCCCCceEEEEEeCC-EEeecccccCCcEEEEEe--chhhCeEEEEEEEC---CcCcEEE
Confidence 3456789999999998 565666 88997622 11110 011223456666 68999999999998 2335667
Q ss_pred EEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeeec-CCceEEE
Q psy7039 312 VVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRP-KPTPIWT 390 (516)
Q Consensus 312 l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p-~~~i~W~ 390 (516)
|.|...|.... ......+..|+.+.|.|.+.|.| .+.+.|+
T Consensus 78 l~V~~~P~~~~--------------------------------------~~~~~~~~~g~~~~l~C~~~g~p~~~~i~W~ 119 (184)
T 3b5h_A 78 IQLHGPPRVKA--------------------------------------VKSSEHINEGETAMLVCKSESVPPVTDWAWY 119 (184)
T ss_dssp EEECCSCCCEE--------------------------------------SCSEEEECTTSCEEEEEECCCSSCCCEEEEE
T ss_pred EEEecCCceee--------------------------------------cCCCcEEcCCCcEEEEEEECCCCCCCeEEEE
Confidence 77766554321 12345678999999999999999 7899999
Q ss_pred E---CCe-ecCC--CCceEEEEcCCeEEEEEcCce-ecCCceEEEEEEEcCCCceeEEEEEEEec
Q psy7039 391 V---NGD-EVSP--DGRIKFETSENQTIYRNKSAK-RATDSGSYTIQLVNTVGSDSASCKVYVVD 448 (516)
Q Consensus 391 ~---~~~-~l~~--~~~~~~~~~~~~~~l~i~~~~-~~~~~g~y~c~a~n~~G~~s~s~~l~v~~ 448 (516)
+ ++. .+.. +.++.+...+....|.|.++. . .|.|.|+|.|.|..|....++.|.|..
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~-~d~G~Y~C~a~N~~g~~~~~~~l~V~~ 183 (184)
T 3b5h_A 120 KITDSEDKALMNGSESRFFVSSSQGRSELHIENLNME-ADPGQYRCNGTSSKGSDQAIITLRVRS 183 (184)
T ss_dssp ECCSSSCEECCTTGGGTEEEEEETTEEEEEECSCCTT-TSSEEEEEEEEETTEEEEEEEEEEEC-
T ss_pred EcCCCCCEEeecCCCCEEEEEecCCeeEEEEeecccc-ccCceEEEEEEeCCCcceEEEEEEEec
Confidence 9 443 3332 367777777777899999999 9 999999999999999988888888863
|
| >2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.66 E-value=7e-16 Score=144.26 Aligned_cols=106 Identities=14% Similarity=0.081 Sum_probs=59.7
Q ss_pred CcCCCeEEEEEEEecCCCCCCCCCCCcceEeccCCCCCccccCcccceEEecCCeEEEEEeeeeccccccCccccccccc
Q psy7039 77 LIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRA 156 (516)
Q Consensus 77 l~~~~~y~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~ 156 (516)
++++|.|.|+|.|. |..... ..+ +.. .+|.+. ..+..+.+.+|+.+.|.|.+.
T Consensus 11 v~~~dsg~Y~C~a~---g~~~~~-~~~-~~~----~~~~~~-~~p~~~~v~~G~~v~L~C~~~----------------- 63 (254)
T 2c1o_A 11 VRPGTSVKLSCKAS---GYSFTN-YWM-NWL----RELVMT-QSPLTLSVTIGQPASISCKSS----------------- 63 (254)
T ss_dssp ------------------------------------CCCEE-EECSEEEECTTSCEEEEEEES-----------------
T ss_pred ecCCccEEEEEcCc---hhhhhh-hhh-hee----eceeEE-eCCceEEecCCCcEEEEeecc-----------------
Confidence 67899999999996 332211 111 111 144444 556789999999999999998
Q ss_pred cCccceeecCcC-----ceeeEEeeCC--eee------------ccCCceEEeecCCeeEEEeccCCCCCCeeEEEEEEc
Q psy7039 157 NSTKGWVKLSEP-----FLNHGWSING--QVC------------QIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLEN 217 (516)
Q Consensus 157 ~~~~~~~~~~~p-----~~~i~W~~~~--~~~------------~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~ 217 (516)
+.+ .+.+.|+++. ..+ ....|+.+...+...+|.|.+++.+|+|.|.|.+.|
T Consensus 64 ---------~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n 134 (254)
T 2c1o_A 64 ---------QSLLYSNGKTYLNWLLQRPGQSPKRLIYLVSKLDSGDPDRFTGSGSGTDFTLKISRVEAEDLGIYYCVQGS 134 (254)
T ss_dssp ---------SCCBCSSSCBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCSEEEEEECS
T ss_pred ---------CcccccCCCCceEEEEeCCCCCceEEEEeccccCCCccceEEEecCCCEEEEEECcCCcccCEEEEEEEEc
Confidence 666 4889998732 211 112566666566677999999999999999999876
Q ss_pred C
Q psy7039 218 N 218 (516)
Q Consensus 218 ~ 218 (516)
.
T Consensus 135 ~ 135 (254)
T 2c1o_A 135 H 135 (254)
T ss_dssp S
T ss_pred C
Confidence 4
|
| >3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.5e-16 Score=155.47 Aligned_cols=213 Identities=12% Similarity=0.007 Sum_probs=146.3
Q ss_pred CCcEEEeCCCcCCCeEEEEEEEecCCCCCCCCCCCcceEeccCCCCCccc-cCcccceEEecCCeEEEEEe-----eeec
Q psy7039 68 GETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAPRID-RSTLNDVKIKAGQSFSFDVK-----EFRE 141 (516)
Q Consensus 68 ~~~~~~i~~l~~~~~y~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~p~~~-~~~~~~~~v~~g~~~~l~C~-----~~~~ 141 (516)
....|.|.+++..|.|.|+|.|.|..|... ....+.+.. +|... ........+.+|+.+.|.|. +.
T Consensus 79 ~~~~L~i~~v~~~D~G~Y~C~~~n~~g~~~---~~~~l~V~~---~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~-- 150 (339)
T 3o4o_C 79 QDGALWLLPALQEDSGTYVCTTRNASYCDK---MSIELRVFE---NTDAFLPFISYPQILTLSTSGVLVCPDLSEFTR-- 150 (339)
T ss_dssp ETTEEEESSBCTTCCEEEECCEEETTEEEE---EEEEEEEEC---SCGGGHHHHCEEEEEETTSCEEEECCSCTTTCC--
T ss_pred eCCeEEECCCCcccCEEEEEEEECCcceEE---EEEEEEEEc---CCCccccccccceEEECCCCEEEEecCCccccc--
Confidence 356899999999999999999998766322 122233322 11111 01122347889999999999 66
Q ss_pred cccccCccccccccccCccceeecCcCceeeEEeeCCeeeccC-CceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCC
Q psy7039 142 LSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIG-GRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLG 220 (516)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g 220 (516)
+.|.+.+.|++++..+... .++.+ ......|.|.+++.+|+|.|+|.+.|..|
T Consensus 151 ------------------------g~p~~~v~W~k~g~~~~~~~~~~~~--~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g 204 (339)
T 3o4o_C 151 ------------------------DKTDVKIQWYKDSLLLDKDNEKFLS--VRGTTHLLVHDVALEDAGYYRCVLTFAHE 204 (339)
T ss_dssp ------------------------SSSCCCBCCEESSCBCCTTCSSEEE--CTTSSEEEESSCCGGGCEEEEEEEECCBT
T ss_pred ------------------------CCCCceEEEecCCeeCCCCCceeEE--cCCcceEEEcccCHhhCeEEEEEEEECCC
Confidence 8899999999999888654 34433 23345899999999999999999999877
Q ss_pred c----eEEEEEeece--------ee----eeccccCCceEEEEEEEEccCCCC-Cceecccccccc--------eEEE--
Q psy7039 221 T----ATASAHVTGT--------EF----TDNNVHEGKAYEYRVSAVNAAGTE-KPKISLDALIGK--------RIKE-- 273 (516)
Q Consensus 221 ~----~~~~~~~~~~--------~~----~~~~l~~g~~~~~~~~~~~~~g~p-~p~i~W~~~~~~--------~~~~-- 273 (516)
. ......+.+. .+ ....+..|..+.|.|.+....|.| .+.+.|...... ....
T Consensus 205 ~~~~~~~~~~~l~V~~~~~~~~P~i~~~~~~~~v~~G~~v~L~C~~~~~~g~P~~~~v~W~~~g~~~~~~~~~~~~~~~~ 284 (339)
T 3o4o_C 205 GQQYNITRSIELRIKKKKEETIPVIISPLKTISASLGSRLTIPCKVFLGTGTPLTTMLWWTANDTHIESAYPGGRVTEGP 284 (339)
T ss_dssp TBCCEEEEEEEEEEECCCCCCCCEECCCSCCCCCCCCSCCCCCCCEEESSSCCSSCEEEEESSSSCSSSSSCSSSCEECC
T ss_pred CeEEEEEEEEEEEEEcCCCCCCCEEecCCceeEeccCCCEEEEEEEECCCCCCCCceEEEEECCeecccccccccceecc
Confidence 4 2223322221 11 123466799999999886557888 888999652110 1110
Q ss_pred -EEeccee------eEEEccCCCCCc-eEEEEEEEecCCCcceeEEEEE
Q psy7039 274 -FVTSTTA------SLNIKNSVRKDS-GIYKIEAKNDYGIDMADIEVVV 314 (516)
Q Consensus 274 -~~~~~~~------~l~i~~l~~~d~-g~y~c~a~n~~g~~~~~~~l~v 314 (516)
......+ .|.|.++..+|. |.|+|.|.|..|..+..+.+.+
T Consensus 285 ~~~~~~~g~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~~G~~~~~~~~~~ 333 (339)
T 3o4o_C 285 RQEYSENNENYIEVPLIFDPVTREDLHMDFKCVVHNTLSFQTLRTTVKE 333 (339)
T ss_dssp CEECCCSSSCEEEECCEECSSCCCSCCCCCEEEEEETTEEECCBCCCCC
T ss_pred eEEecccCceEEEEEEEEEEechhhcCccEEEEEEeccCceEEEEEhhH
Confidence 0011112 799999999997 9999999999999877665544
|
| >3t1w_A Four-domain fibronectin fragment; human fibronectin, FN type-III domain, oncofetal splice VARI extra-domain B, EIIIB, ED-B, angiogenesis, integrin; 2.40A {Homo sapiens} PDB: 4gh7_B | Back alignment and structure |
|---|
Probab=99.66 E-value=7.8e-14 Score=138.23 Aligned_cols=94 Identities=23% Similarity=0.258 Sum_probs=73.7
Q ss_pred cceeccCCCCCCCCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCC-CeEEeEEeecCCcEEEeCCCcCCC
Q psy7039 3 HSVLIKNPFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTG-NWEKAVVVPAGETSCTVPGLIEGE 81 (516)
Q Consensus 3 ~~~~~~~~~~~p~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~-~~~~~~~~~~~~~~~~i~~l~~~~ 81 (516)
..+.+....++| +|.+|.+..++++++.|+|.+|. ++.+.+|+|++...+. .+..........+++.|.+|.+++
T Consensus 86 ~~~~~~~~~~~p-~p~~l~~~~~~~~si~l~W~~~~---~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t 161 (375)
T 3t1w_A 86 VPISDTIIPEVP-QLTDLSFVDITDSSIGLRWTPLN---SSTIIGYRITVVAAGEGIPIFEDFVDSSVGYYTVTGLEPGI 161 (375)
T ss_dssp CCEEEEECCCCC-CCSCCEEECCCSSEEEEECCCCC---CTTEEEEEEEEEESSSCCSCEEEEECTTCCEEEEECCCTTC
T ss_pred CcEEeeEcCCCC-CCceEEEEecCCCeEEEEEECCC---CCCceEEEEEEEECCCCCceeEEEcCCCcceEEEeCCCCCC
Confidence 344555566677 48999999999999999999973 3469999999998665 222333445678899999999999
Q ss_pred eEEEEEEEecCCCCCCCCC
Q psy7039 82 TYQFQVRAVNAAGPGEASK 100 (516)
Q Consensus 82 ~y~~~~~a~n~~g~~~~s~ 100 (516)
.|.|+|+|.|..|.+.++.
T Consensus 162 ~Y~~~V~a~~~~g~s~~s~ 180 (375)
T 3t1w_A 162 DYDISVITLINGGESAPTT 180 (375)
T ss_dssp EEEEEEEEEETTEECCCEE
T ss_pred EEEEEEEEEeCCcccCCee
Confidence 9999999999988776543
|
| >4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A | Back alignment and structure |
|---|
Probab=99.66 E-value=5.7e-15 Score=135.45 Aligned_cols=130 Identities=15% Similarity=0.150 Sum_probs=89.2
Q ss_pred ceeeEEEccCCCCCceEEEEEEEecCCCcceeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccc
Q psy7039 278 TTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKIT 357 (516)
Q Consensus 278 ~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~ 357 (516)
....|.|.+++.+|+|.|+|.|.|..|.....+.+.+...+..
T Consensus 81 ~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~v~~~~~~~~~~------------------------------------- 123 (226)
T 4f80_A 81 GKAALRIHNVTASDSGKYLCYFQDGDFYEKALVELKVAALGSD------------------------------------- 123 (226)
T ss_dssp TEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEEBCCCC-------------------------------------
T ss_pred CeEEEEEeeCchHHCeeEEEEEECCCcEEEEEEEEeeccceec-------------------------------------
Confidence 4568999999999999999999998777665555444332222
Q ss_pred cccccccEEEEcCCeEEEEEEEeee-cCCceEEEECCee-cCCCCceEEEEcC-CeEEEEEcCceecCCceEEEEEEEcC
Q psy7039 358 SDLSIRDMTVLAGEEFTITVPFSGR-PKPTPIWTVNGDE-VSPDGRIKFETSE-NQTIYRNKSAKRATDSGSYTIQLVNT 434 (516)
Q Consensus 358 ~~~~~~~~~v~~g~~~~l~C~~~g~-p~~~i~W~~~~~~-l~~~~~~~~~~~~-~~~~l~i~~~~~~~~~g~y~c~a~n~ 434 (516)
......+..|..+.+.|.+.|. |.|.|.|++++.. +............ ....+.+..+.. .|.|.|+|.|.|.
T Consensus 124 ---~~~~~~~~~g~~v~l~c~~~g~~P~p~i~W~k~~~~~~~~~~~~~~~~~~g~~~v~s~l~v~~-~d~G~YtC~a~N~ 199 (226)
T 4f80_A 124 ---LHVDVKGYKDGGIHLECRSTGWYPQPQIQWSNNKGENIPTVEAPVVADGVGLYAVAASVIMRG-SSGEGVSCTIRSS 199 (226)
T ss_dssp ---CEEEEEEEETTEEEEEEEEEEEBSCCEEEEECTTSCBCCCEECCCEECTTSCEEEEEEEEECC-----CEEEEEEET
T ss_pred ---ccceeeeccCCceeeEEEeccCCCCCEEEEEECCceEcCCCceEEEECCCCcEEEEEEEEech-hcCcEEEEEEEeC
Confidence 1234567889999999999885 8899999986543 3322222222222 223344556677 8999999999999
Q ss_pred CCceeEEEEEEEec
Q psy7039 435 VGSDSASCKVYVVD 448 (516)
Q Consensus 435 ~G~~s~s~~l~v~~ 448 (516)
.|....++.|.|..
T Consensus 200 ~g~~~~~~~v~v~e 213 (226)
T 4f80_A 200 LLGLEKTASISIAD 213 (226)
T ss_dssp TTTEEEEEEECCCT
T ss_pred CCCeEEEEEEEECC
Confidence 99998888888754
|
| >1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.66 E-value=1.9e-15 Score=136.73 Aligned_cols=166 Identities=17% Similarity=0.163 Sum_probs=121.2
Q ss_pred CcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeee------------ccCCc
Q psy7039 119 STLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVC------------QIGGR 186 (516)
Q Consensus 119 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~------------~~~~~ 186 (516)
..+..+.+.+|+.+.|.|.+. +.|.+.+.|++++..+ ....+
T Consensus 6 ~~~~~~~v~~G~~v~L~C~~~--------------------------~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r 59 (212)
T 1f97_A 6 TAQSDVQVPENESIKLTCTYS--------------------------GFSSPRVEWKFVQGSTTALVCYNSQITAPYADR 59 (212)
T ss_dssp CSCSEEEEETTCCEEEECEEE--------------------------SCSSEEEEEEEEETTEEEEEEETTEECGGGTTT
T ss_pred ecCCCeEEEcCCCEEEEeEeC--------------------------CCCCcEEEEEECCCceeeEEecCCcccccccCc
Confidence 455678899999999999999 8899999999976553 11234
Q ss_pred eEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCc--eEEEEEeecee-------eeeccccCCceEEEEEEEEccCCCC
Q psy7039 187 ADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGT--ATASAHVTGTE-------FTDNNVHEGKAYEYRVSAVNAAGTE 257 (516)
Q Consensus 187 ~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~--~~~~~~~~~~~-------~~~~~l~~g~~~~~~~~~~~~~g~p 257 (516)
+.+. + ..|.|.+++.+|+|.|+|.+.+..|. ......+.+.. .....+..|..+.+.|.+ ..|.|
T Consensus 60 ~~~~--~--~~L~i~~v~~~D~G~Y~C~~~~~~g~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~--~~~~p 133 (212)
T 1f97_A 60 VTFS--S--SGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVLVPPSKPTISVPSSVTIGNRAVLTCSE--HDGSP 133 (212)
T ss_dssp EEEE--T--TEEEESCCCGGGCEEEEEEEEETTSSSEEEEEEEEEEEBCCCCCEEECCSEEETTSCEEEEEEC--SCCBS
T ss_pred EEee--c--eeEEEcccCcccCeEEEEEEEccCCCcccEEEEEEEEEcCCCCcccCCccccCCCCeEEEEEEc--ccCcC
Confidence 4332 1 68999999999999999999998662 23333222211 122356789999999983 27889
Q ss_pred Cceeccccccc-ce------------EEEEEecceeeEEEccCCCCCceEEEEEEEecCCCc--ceeEEEEEec
Q psy7039 258 KPKISLDALIG-KR------------IKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGID--MADIEVVVVS 316 (516)
Q Consensus 258 ~p~i~W~~~~~-~~------------~~~~~~~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~--~~~~~l~v~~ 316 (516)
.|.+.|.+... .- ...........|.|.++..+|.|.|+|.|.|..|.. +..+.|.|..
T Consensus 134 ~~~i~W~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~~~l~V~~ 207 (212)
T 1f97_A 134 PSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMDAVE 207 (212)
T ss_dssp CCEEEEEETTEESBC-----CBSCSSSCEEECTTTCCEEESSCCGGGCEEEEEEEECSSSCCEECCCEEEEEES
T ss_pred CCEEEEEeCCcccccccccccccccCceeEecCCCceEEEEecChhhCcEEEEEEccccCCccccceEEEEEEE
Confidence 99999965322 11 112233557789999999999999999999999987 5566666654
|
| >1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A | Back alignment and structure |
|---|
Probab=99.65 E-value=1.4e-15 Score=137.06 Aligned_cols=172 Identities=14% Similarity=0.037 Sum_probs=122.0
Q ss_pred ccCCceEEEEEEEEccCCCCCceecccccccc--eEEEEEecceeeEEEccCCCCCceEEEEEEEecCCCcceeEEEEEe
Q psy7039 238 VHEGKAYEYRVSAVNAAGTEKPKISLDALIGK--RIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVV 315 (516)
Q Consensus 238 l~~g~~~~~~~~~~~~~g~p~p~i~W~~~~~~--~~~~~~~~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~~~~l~v~ 315 (516)
+.+|..+.+.|.+ .|.|.|.+.|.+..+. ............|.|.+++.+|+|.|+|.|.|..|..+..+.|.|.
T Consensus 13 ~~~G~~v~L~C~~---~g~P~p~i~W~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~l~V~ 89 (202)
T 1vca_A 13 AQIGDSVSLTCST---TGCESPFFSWRTQIDSPLNGKVTNEGTTSTLTMNPVSFGNEHSYLCTATCESRKLEKGIQVEIY 89 (202)
T ss_dssp EETTSCEEEEEEE---ESCSSCEEEEEETTCCCCSSEEEEETTEEEEEESSCCGGGCSEEEEEEEETTEEEEEEEEEEEE
T ss_pred EcCCCcEEEEEee---cCCCCCeEEEECCCCCCccceEEEcCCccEEEECcCCHHHCEEEEEEEEECCceEeeEEEEEEE
Confidence 3489999999998 7889999999762211 1122234556789999999999999999999998877778888888
Q ss_pred cCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeeecCC---ceEEEEC
Q psy7039 316 SKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKP---TPIWTVN 392 (516)
Q Consensus 316 ~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~---~i~W~~~ 392 (516)
..|..+.. .....+..|+.+.|.|.+.+.+++ .|.|+++
T Consensus 90 ~~p~~~~~--------------------------------------~~~~~~~~G~~~~L~C~~~~~~p~~~~~i~W~k~ 131 (202)
T 1vca_A 90 SFPKDPEI--------------------------------------HLSGPLEAGKPITVKCSVADVYPFDRLEIDLLKG 131 (202)
T ss_dssp BCCSCCEE--------------------------------------EESSCEETTSCEEEEEEEEEEBSGGGEEEEEEET
T ss_pred eCCCCCEe--------------------------------------CCceEEcCCCCEEEEEEECCcCCCCCeEEEEEeC
Confidence 76654311 011357899999999999987543 6899999
Q ss_pred CeecCCCCceEEE----EcCCeEEEEEcCceecCCceEEEEEEEcCCCc-------eeEEEEEEEecCCC
Q psy7039 393 GDEVSPDGRIKFE----TSENQTIYRNKSAKRATDSGSYTIQLVNTVGS-------DSASCKVYVVDKPS 451 (516)
Q Consensus 393 ~~~l~~~~~~~~~----~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~-------~s~s~~l~v~~~p~ 451 (516)
+..+......... .......|.|..... +|.|.|+|.|.|..|. ...+..|.|..+|.
T Consensus 132 ~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~-d~~g~ytC~A~n~~~~~~~~~~~~~~~~~L~V~y~P~ 200 (202)
T 1vca_A 132 DHLMKSQEFLEDADRKSLETKSLEVTFTPVIE-DIGKVLVCRAKLHIDEMDSVPTVRQAVKELQVYISPK 200 (202)
T ss_dssp TEEEEEEECCSCCSSCCCEEEEEEEEECCCGG-GTTCEEEEEEEECSCCCTTSCSEEEEEEECCEECCC-
T ss_pred CeECcccccccccCcCcceEEEEEEEEEeeec-cCCCeEEEEEEccccCCCCcceeEeeEEEEEEecCCC
Confidence 9876422100000 001124567888877 8999999999999876 34567777776543
|
| >1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=6.3e-16 Score=135.99 Aligned_cols=165 Identities=16% Similarity=0.136 Sum_probs=121.9
Q ss_pred CCccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCce-eeEEeeCCeeeccCCceEEee
Q psy7039 113 APRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFL-NHGWSINGQVCQIGGRADVQT 191 (516)
Q Consensus 113 ~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~i~W~~~~~~~~~~~~~~~~~ 191 (516)
+|.+. ..+..+.+.+|+.+.|.|.+. +.+.+ .+.|++++..+..
T Consensus 4 ~P~i~-~~p~~~~v~~G~~v~L~C~~~--------------------------~~~~~~~i~W~~~~~~~~~-------- 48 (176)
T 1f2q_A 4 KPKVS-LNPPWNRIFKGENVTLTCNGN--------------------------NFFEVSSTKWFHNGSLSEE-------- 48 (176)
T ss_dssp CCCCE-EESSCSEEETTCCEEEECCTT--------------------------CC----CCEEEETTEECSC--------
T ss_pred CCEEE-cCCCCcceecCCcEEEEEeCC--------------------------CCCCcceEEEEECCeECCC--------
Confidence 55565 455667899999999999998 77764 7999999887752
Q ss_pred cCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEEeecee----eeeccccCCceEEEEEEEEccCCCCCceecccccc
Q psy7039 192 TKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVTGTE----FTDNNVHEGKAYEYRVSAVNAAGTEKPKISLDALI 267 (516)
Q Consensus 192 ~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~~~~~----~~~~~l~~g~~~~~~~~~~~~~g~p~p~i~W~~~~ 267 (516)
....|.|.+++.+|+|.|+|.+.+..+.....+.+.... .....+.+|+.+.+.|.+. .|.|.+.+.|.+..
T Consensus 49 --~~~~L~i~~v~~~d~G~Y~C~~~~~~~s~~~~l~V~~~~~~~~~~~~~~~~g~~~~l~C~~~--~~~p~~~~~W~~~g 124 (176)
T 1f2q_A 49 --TNSSLNIVNAKFEDSGEYKCQHQQVNESEPVYLEVFSDWLLLQASAEVVMEGQPLFLRCHGW--RNWDVYKVIYYKDG 124 (176)
T ss_dssp --CSSEEEECSCCGGGCEEEEEECTTSSCCCCEEEEEECSSEEEEESCSEEETTSCEEEEEEEG--GGCCEEEEEEEETT
T ss_pred --CceEEEEeccceecCEEEEEEcCCccccccEEEEEeCcceeecCCcceeeCCCCEEEEEEec--CCCCceEEEEEECC
Confidence 356899999999999999999998776655555443211 1234567899999999872 45677899997622
Q ss_pred cceEEEEEecceeeEEEccCCCCCceEEEEEEEecCC-CcceeEEEEEecCCC
Q psy7039 268 GKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYG-IDMADIEVVVVSKPG 319 (516)
Q Consensus 268 ~~~~~~~~~~~~~~l~i~~l~~~d~g~y~c~a~n~~g-~~~~~~~l~v~~~p~ 319 (516)
.. +........|.|.++..+|+|.|+|.|.|..+ ..+..+.|.|..+|.
T Consensus 125 -~~--~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~p~ 174 (176)
T 1f2q_A 125 -EA--LKYWYENHNISITNATVEDSGTYYCTGKVWQLDYESEPLNITVIKAPR 174 (176)
T ss_dssp -EE--CCSCCCSSEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEECSCC
T ss_pred -EE--EeeecCCCeEEECCCCcccCEEEEEEEEeCCcceEecCEEEEEecCCC
Confidence 11 11234567899999999999999999999644 345668888887764
|
| >2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone receptor/immune system complex; 3.80A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1 PDB: 3loh_E | Back alignment and structure |
|---|
Probab=99.64 E-value=2e-16 Score=173.94 Aligned_cols=82 Identities=16% Similarity=0.267 Sum_probs=65.8
Q ss_pred CCCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeC--------------C-CCeEEeEEee---------cCC
Q psy7039 14 PGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDK--------------T-GNWEKAVVVP---------AGE 69 (516)
Q Consensus 14 p~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~--------------~-~~~~~~~~~~---------~~~ 69 (516)
..+|.+|++..+++++|.|+|.+|..+++++|.+|.|+|++. + ..|....... ...
T Consensus 469 ~~~~~~l~v~~~s~~sv~LsW~~p~~~~~~~i~gY~V~y~~~~~~n~t~~~~~~~c~~~~w~~~~~~~~~~~~~~~~~~~ 548 (897)
T 2dtg_E 469 ENELLKFSYIRTSFDKILLRWEPYWPPDFRDLLGFMLFYKEAPYQNVTEFDGQDACGSNSWTVVDIDPPLRSNDPKSQNH 548 (897)
T ss_dssp SCCBCCCSEEEECSSCEEEECCCCCSSSCCCEEEECCCSSSCCTTTCCCCCCCCCSCCCCCCCCCSCCEEEECCCCSSSC
T ss_pred ccceeEEEEEEEecCeEEEEecCCCCCCCceeeeEEEEEEeCCCCCcccccCccccCCCcceEEecCCCccccccccccc
Confidence 357789999999999999999998766777899999998875 1 2565432111 026
Q ss_pred cEEEeCCCcCCCeEEEEEEE-ecCCCC
Q psy7039 70 TSCTVPGLIEGETYQFQVRA-VNAAGP 95 (516)
Q Consensus 70 ~~~~i~~l~~~~~y~~~~~a-~n~~g~ 95 (516)
+++.|.+|+|++.|.|+|+| .|..|.
T Consensus 549 ~~~~l~~L~P~T~Y~~~V~A~~n~~G~ 575 (897)
T 2dtg_E 549 PGWLMRGLKPWTQYAIFVKTLVTFSDE 575 (897)
T ss_dssp CEEEECSCCSSCBCCBEEEECCCCCSS
T ss_pred cceEeCCCCCCcEEEEEEEEEEeccCC
Confidence 88999999999999999999 898887
|
| >3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X | Back alignment and structure |
|---|
Probab=99.64 E-value=1.4e-15 Score=137.74 Aligned_cols=170 Identities=18% Similarity=0.290 Sum_probs=121.4
Q ss_pred CcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcC----ceeeEEee----------------CC
Q psy7039 119 STLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEP----FLNHGWSI----------------NG 178 (516)
Q Consensus 119 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p----~~~i~W~~----------------~~ 178 (516)
.++..+.+.+|+.+.|.|.+. +.+ .+.+.|++ ++
T Consensus 5 ~~~~~v~v~~G~~v~L~C~~~--------------------------~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~ 58 (214)
T 3jz7_A 5 TPEQRIEKAKGETAYLPCKFT--------------------------LSPEDQGPLDIEWLISPSDNQIVDQVIILYSGD 58 (214)
T ss_dssp -CEEEEEEETTSCEEECCBCC--------------------------CCTTCCSCCEEEEEEEESSSSCCSEEEEEEETT
T ss_pred cCCceEEEecCCCEEEEEEEe--------------------------cCCCCCCcEEEEEEecCCCCCCCceEEEEEeCC
Confidence 344668899999999999998 444 34666665 44
Q ss_pred eeecc-----CCceEEee---cCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEEeecee-------eeeccccCCce
Q psy7039 179 QVCQI-----GGRADVQT---TKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVTGTE-------FTDNNVHEGKA 243 (516)
Q Consensus 179 ~~~~~-----~~~~~~~~---~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~~~~~-------~~~~~l~~g~~ 243 (516)
..+.. ..|..+.. .....+|.|.+++.+|+|.|+|.+.+..|.......+.+.. .....+..|..
T Consensus 59 ~~~~~~~~~~~~r~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~ 138 (214)
T 3jz7_A 59 KIYDNYYPDLKGRVHFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVKPSGTRCFVDGSEEIGND 138 (214)
T ss_dssp EEECCCCGGGTTTEEESCSCGGGTBCCEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCCBSCEEEEESCCBTTCC
T ss_pred eEccccCCccccceEEeccCccCCcccEEEccCChhhCeEEEEEEEeCCCccccEEEEEEEcCCCCceeeeecceecCCc
Confidence 44432 34444432 22467899999999999999999999887665555433321 12334678999
Q ss_pred EEEEEEEEccCCCCCceecccccccc-eEE--EEEecceeeEEEccCCCCCceEEEEEEEecCCCcceeEEEEEec
Q psy7039 244 YEYRVSAVNAAGTEKPKISLDALIGK-RIK--EFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVS 316 (516)
Q Consensus 244 ~~~~~~~~~~~g~p~p~i~W~~~~~~-~~~--~~~~~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~~~~l~v~~ 316 (516)
+.+.|.+. .|.|.|.+.|.+.... ... .........|.|.++..+|+|.|+|.|.|..|.....+.|.|..
T Consensus 139 v~l~C~~~--~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~ 212 (214)
T 3jz7_A 139 FKLKCEPK--EGSLPLQFEWQKLSDSQTMPTPWLAEMTSPVISVKNASSEYSGTYSCTVQNRVGSDQCMLRLDVVP 212 (214)
T ss_dssp EEEEEECS--BCCSSCEEEEEECSTTCCCCGGGGGGTTSSEEEECSCCGGGCEEEEEEEECSSCEEEEEEEECCBC
T ss_pred EEEEecCC--CCCCCCEEEEEECCCCCccCccceeccCCCEEEEecCCHHHCEEEEEEEEcCCCcEEEEEEEEEeC
Confidence 99999873 6889999999762211 110 01123456999999999999999999999999998888888763
|
| >3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X | Back alignment and structure |
|---|
Probab=99.64 E-value=3.6e-16 Score=141.69 Aligned_cols=167 Identities=20% Similarity=0.220 Sum_probs=122.3
Q ss_pred ccccCCceEEEEEEEEccCCCC----Cceecccccccc--------------eE----------EEEE-----ecceeeE
Q psy7039 236 NNVHEGKAYEYRVSAVNAAGTE----KPKISLDALIGK--------------RI----------KEFV-----TSTTASL 282 (516)
Q Consensus 236 ~~l~~g~~~~~~~~~~~~~g~p----~p~i~W~~~~~~--------------~~----------~~~~-----~~~~~~l 282 (516)
..+.+|+.+.|.|.+ .+.+ .+.+.|.+.... .. .... ......|
T Consensus 10 v~v~~G~~v~L~C~~---~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L 86 (214)
T 3jz7_A 10 IEKAKGETAYLPCKF---TLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGRVHFTSNDVKSGDASI 86 (214)
T ss_dssp EEEETTSCEEECCBC---CCCTTCCSCCEEEEEEEESSSSCCSEEEEEEETTEEECCCCGGGTTTEEESCSCGGGTBCCE
T ss_pred EEEecCCCEEEEEEE---ecCCCCCCcEEEEEEecCCCCCCCceEEEEEeCCeEccccCCccccceEEeccCccCCcccE
Confidence 356789999999987 5544 568999652110 00 0111 1145779
Q ss_pred EEccCCCCCceEEEEEEEecCCCcceeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeecccccccccc
Q psy7039 283 NIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSI 362 (516)
Q Consensus 283 ~i~~l~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~ 362 (516)
.|.+++.+|+|.|+|.+.|..|.....+.|.|...|..+.. .
T Consensus 87 ~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~V~~~p~~~~~--------------------------------------~ 128 (214)
T 3jz7_A 87 NVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVKPSGTRC--------------------------------------F 128 (214)
T ss_dssp EECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCCBSCEE--------------------------------------E
T ss_pred EEccCChhhCeEEEEEEEeCCCccccEEEEEEEcCCCCcee--------------------------------------e
Confidence 99999999999999999999888888888888877654321 1
Q ss_pred ccEEEEcCCeEEEEEEE-eeecCCceEEEECCe--ecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCcee
Q psy7039 363 RDMTVLAGEEFTITVPF-SGRPKPTPIWTVNGD--EVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDS 439 (516)
Q Consensus 363 ~~~~v~~g~~~~l~C~~-~g~p~~~i~W~~~~~--~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s 439 (516)
....+..|+.+.|.|.+ .+.|.+.+.|++++. .+...... ......|.|.++.. .|.|.|+|.|.|..|..+
T Consensus 129 ~~~~~~~g~~v~l~C~~~~g~p~~~v~W~~~~~~~~~~~~~~~----~~~~~~L~i~~~~~-~d~G~Y~C~a~N~~g~~~ 203 (214)
T 3jz7_A 129 VDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTPWLA----EMTSPVISVKNASS-EYSGTYSCTVQNRVGSDQ 203 (214)
T ss_dssp EESCCBTTCCEEEEEECSBCCSSCEEEEEECSTTCCCCGGGGG----GTTSSEEEECSCCG-GGCEEEEEEEECSSCEEE
T ss_pred eecceecCCcEEEEecCCCCCCCCEEEEEECCCCCccCcccee----ccCCCEEEEecCCH-HHCEEEEEEEEcCCCcEE
Confidence 11235789999999999 899999999999543 33221111 11223799999999 999999999999999998
Q ss_pred EEEEEEEec
Q psy7039 440 ASCKVYVVD 448 (516)
Q Consensus 440 ~s~~l~v~~ 448 (516)
.++.|.|..
T Consensus 204 ~~~~l~V~~ 212 (214)
T 3jz7_A 204 CMLRLDVVP 212 (214)
T ss_dssp EEEEECCBC
T ss_pred EEEEEEEeC
Confidence 888888874
|
| >1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C* | Back alignment and structure |
|---|
Probab=99.64 E-value=3.6e-15 Score=131.02 Aligned_cols=162 Identities=12% Similarity=0.029 Sum_probs=119.1
Q ss_pred CCCccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCcee-eEEeeCCeeeccCCceEEe
Q psy7039 112 LAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLN-HGWSINGQVCQIGGRADVQ 190 (516)
Q Consensus 112 ~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-i~W~~~~~~~~~~~~~~~~ 190 (516)
.+|.+. ..+..+.+.+|+.+.|.|.+. +.|.+. +.|++++..+..
T Consensus 6 ~~p~i~-~~p~~~~v~~G~~v~L~C~~~--------------------------~~p~~~~~~W~~~~~~~~~------- 51 (175)
T 1fnl_A 6 PKAVVF-LEPQWYSVLEKDSVTLKCQGA--------------------------YSPEDNSTQWFHNESLISS------- 51 (175)
T ss_dssp CCCEEE-EESCCSEEETTCCEEEEEECC--------------------------CBTTBCCCEEEETTEEEES-------
T ss_pred CCCEEE-EcCCceeeeCCCcEEEEeeCC--------------------------CCCCCcceEEEECCEEccC-------
Confidence 345555 445557899999999999999 777665 789999887752
Q ss_pred ecCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEEeecee----eeeccccCCceEEEEEEEEccCCCCC-ceecccc
Q psy7039 191 TTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVTGTE----FTDNNVHEGKAYEYRVSAVNAAGTEK-PKISLDA 265 (516)
Q Consensus 191 ~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~~~~~----~~~~~l~~g~~~~~~~~~~~~~g~p~-p~i~W~~ 265 (516)
....|.|.+++.+|+|.|+|.+.|..+.....+.+.... .....+.+|..+.+.|.+ .|.++ +.+.|.+
T Consensus 52 ---~~~~L~i~~~~~~d~G~Y~C~~~n~~~s~~~~l~V~~~~~~~~~~~~~~~~g~~~~l~C~~---~~~~~~~~~~W~k 125 (175)
T 1fnl_A 52 ---QASSYFIDAATVNDSGEYRCQTNLSTLSDPVQLEVHIGWLLLQAPRWVFKEEDPIHLRCHS---WKNTALHKVTYLQ 125 (175)
T ss_dssp ---SCSEEEESSCCGGGCEEEEEECSSSCCCCCEEEEEECSSEEEECSCSEEETTCCEEEEEEE---CTTCCCEEEEEEE
T ss_pred ---CceEEEEeCCCcccCEEEEEEeeCCcccccEEEEEeCCCceeeCCCceecCCCCEEEEEEc---CCCCCceEEEEEE
Confidence 345899999999999999999998766555444443211 122346689999999988 55544 5999976
Q ss_pred cccceEEEEEecceeeEEEccCCCCCceEEEEEEEecCCC-cceeEEEEEec
Q psy7039 266 LIGKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGI-DMADIEVVVVS 316 (516)
Q Consensus 266 ~~~~~~~~~~~~~~~~l~i~~l~~~d~g~y~c~a~n~~g~-~~~~~~l~v~~ 316 (516)
... .. ........|.|.+++.+|+|.|+|.|.|..+. .+..+.|.|..
T Consensus 126 ~g~-~~--~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~ 174 (175)
T 1fnl_A 126 NGK-DR--KYFHHNSDFHIPKATLKDSGSYFCRGLVGSKNVSSETVNITITQ 174 (175)
T ss_dssp TTE-EE--EEEEECCCEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC
T ss_pred CCe-Ec--cCCCCCCEEEEcccChhhCeEEEEEEEcCCCCccCccEEEEEeC
Confidence 322 11 12234678999999999999999999997554 45567777754
|
| >1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A | Back alignment and structure |
|---|
Probab=99.64 E-value=5.2e-15 Score=132.76 Aligned_cols=81 Identities=12% Similarity=0.097 Sum_probs=55.4
Q ss_pred EEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCC-ceEEE-EcCCeEEEEEcCceecCCceEEEEEEEcCCCc-----
Q psy7039 365 MTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDG-RIKFE-TSENQTIYRNKSAKRATDSGSYTIQLVNTVGS----- 437 (516)
Q Consensus 365 ~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~-~~~~~-~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~----- 437 (516)
..+..|+.+.|.|.+.+. .+.+.|++++..+.... .+... .......|.|.++.. .|.|.|+|.|.|..+.
T Consensus 110 ~~v~~G~~v~L~C~~~~~-~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~L~i~~v~~-~D~G~Y~C~a~n~~~~~~~s~ 187 (198)
T 1ugn_A 110 PVVNSGGNVTLQCDSQVA-FDGFILCKEGEDEHPQCLNSQPHARGSSRAIFSVGPVSP-SRRWWYRCYAYDSNSPYEWSL 187 (198)
T ss_dssp SEEETTCCEEEEEECSSC-CSEEEEEEC------CEEEC------CCEEEEEECCCCT-TSCEEEEEEEECTTSTTEECC
T ss_pred cccCCCCcEEEEEecCCC-CcEEEEEECCCccCCccccccccCCCcceeEEEecccCc-ccCeEEEEEEEeCCCCccccC
Confidence 467899999999999988 78999999998763322 11111 122357899999999 9999999999999763
Q ss_pred eeEEEEEEEe
Q psy7039 438 DSASCKVYVV 447 (516)
Q Consensus 438 ~s~s~~l~v~ 447 (516)
.+..+.|.|.
T Consensus 188 ~S~~~~l~V~ 197 (198)
T 1ugn_A 188 PSDLLELLVL 197 (198)
T ss_dssp CCCCEEEEEE
T ss_pred cCceEEEEec
Confidence 2445566554
|
| >3l5i_A Interleukin-6 receptor subunit beta; cytokine receptor, fibronectin type III domain, alternative cell membrane, disulfide bond; 1.90A {Homo sapiens} PDB: 3l5j_A | Back alignment and structure |
|---|
Probab=99.64 E-value=3.1e-14 Score=135.84 Aligned_cols=84 Identities=15% Similarity=0.185 Sum_probs=61.5
Q ss_pred CCCCCCCcceEEEeee-----CCeeEEEecCCC-CCCCCceeceEEEEEeCCCCeEEeEEeecCCcEEEeCCCcCCCeEE
Q psy7039 11 FDEPGKPTDLEATDWD-----KDHVDLQWTPPI-SDGGSPITGYVVEMKDKTGNWEKAVVVPAGETSCTVPGLIEGETYQ 84 (516)
Q Consensus 11 ~~~p~~p~~l~~~~~~-----~~~v~l~W~~p~-~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~ 84 (516)
+++|+.|.++...... +++|.|+|.++. .+++++|.+|.|++...+..+... ..+. ..+.+|.+++.|.
T Consensus 1 E~~Ps~p~~~~~~~~~~~~~g~~sv~l~W~p~~~~~~~g~i~~Y~V~~~~~~~~~~~~---~~~~--~~~~~l~p~t~Y~ 75 (290)
T 3l5i_A 1 EDRPSKAPSFWYKIDPSHTQGYRTVQLVWKTLPPFEANGKILDYEVTLTRWKSHLQNY---TVNA--TKLTVNLTNDRYL 75 (290)
T ss_dssp CCCCSSCCCEEEEEEECSSTTCEEEEEEECCCCHHHHCSCEEEEEEEEEETTSCCEEE---EESS--SEEEEEECSSCEE
T ss_pred CCCCCCCCceeEEecccccCCCceEEEEEccCCchhcCCceEeEEEEEEeCCcCceeE---ecCC--cEEEEEcCCceEE
Confidence 4678888888665322 478999999842 355678999999999876643211 1123 3567789999999
Q ss_pred EEEEEecCCCCCCCC
Q psy7039 85 FQVRAVNAAGPGEAS 99 (516)
Q Consensus 85 ~~~~a~n~~g~~~~s 99 (516)
|+|.|.|..|.+.++
T Consensus 76 ~~V~A~n~~G~s~~s 90 (290)
T 3l5i_A 76 ATLTVRNLVGKSDAA 90 (290)
T ss_dssp EEEEEEESSCBCCCE
T ss_pred EEEEEEcCCCCCCCc
Confidence 999999999987554
|
| >3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.64 E-value=5.9e-15 Score=134.22 Aligned_cols=131 Identities=22% Similarity=0.351 Sum_probs=114.6
Q ss_pred ccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCC--CceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeE
Q psy7039 363 RDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPD--GRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSA 440 (516)
Q Consensus 363 ~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~--~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~ 440 (516)
.++.+..|+.+.|.|.+.|.|.+.+.|++++..+... .++.+........|.|.++.. .|.|.|.|.|.|..|....
T Consensus 26 ~~~~~~~G~~v~l~C~~~g~p~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~~L~i~~~~~-~d~G~Y~C~a~n~~g~~~~ 104 (215)
T 3mtr_A 26 VAVYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSE-NDFGNYNCTAVNRIGQESL 104 (215)
T ss_dssp SEEEECTTCCEEEEEEEEEESCCEEEEEETTEESSCSSSCSEEEEEETTEEEEEECCCSG-GGCEEEEEEEECSSCEEEE
T ss_pred ceEEEECCCCEEEEEEEeecCCCEEEEEECCeECCCCCCccEEEecCCCeeEEEEecCCh-hhCeEEEEEEEECCCceEE
Confidence 4477889999999999999999999999999988655 466766666778999999999 9999999999999999999
Q ss_pred EEEEEEecCCCCCCCCcccccccCCeEEEEeeCCCCCCCCCcceEEEEEEecCCCc
Q psy7039 441 SCKVYVVDKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATGV 496 (516)
Q Consensus 441 s~~l~v~~~p~~P~~~l~~~~~~~~~~~l~W~~p~~~~~~~i~~Y~v~~~~~~~~~ 496 (516)
.+.|.|..+|.+| ..+.+ .....++.|+|++|..+++.++.+|.|+++..+...
T Consensus 105 ~~~l~v~~~P~~p-~~~~~-~~~~~~~~l~w~~p~~~~~~pi~~y~v~~~~~~~~~ 158 (215)
T 3mtr_A 105 EFILVQADTPSSP-SIDQV-EPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEV 158 (215)
T ss_dssp EEEEEECCCCCCC-EEEEE-EEETTEEEEEEECCSCCCSSCEEEEEEEEEETTCCC
T ss_pred EEEEEECCCCCCC-cceEE-EEecceEEEEEecCCccCCCceEEEEEEEEECCCCc
Confidence 9999999999888 55555 356788999999888788999999999999987765
|
| >4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.63 E-value=6.6e-16 Score=140.09 Aligned_cols=131 Identities=13% Similarity=0.170 Sum_probs=90.8
Q ss_pred ceeeEEEccCCCCCceEEEEEEEecCCCccee-EEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeecccc
Q psy7039 278 TTASLNIKNSVRKDSGIYKIEAKNDYGIDMAD-IEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKI 356 (516)
Q Consensus 278 ~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~~-~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~ 356 (516)
...+|.|.+++.+|+|.|.|.+.+..+..... ..+.+...+....
T Consensus 77 ~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------- 122 (218)
T 4frw_A 77 LDGSVLLRNAVQADEGEYECRVSTFPAGSFQARLRLRVLVPPLPSL---------------------------------- 122 (218)
T ss_dssp TBCCEEESSCCGGGCEEEEEEEEEETTEEEEEEEEEEEEBCCCCEE----------------------------------
T ss_pred CeEEEEEeeccHHHCCceeEEEEeccCceeeeEEEEEEeeecccee----------------------------------
Confidence 34679999999999999999999876654433 3333333222210
Q ss_pred ccccccccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEEEEc-CCeEEEEEcCceecCCceEEEEEEEcCC
Q psy7039 357 TSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETS-ENQTIYRNKSAKRATDSGSYTIQLVNTV 435 (516)
Q Consensus 357 ~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~-~~~~~l~i~~~~~~~~~g~y~c~a~n~~ 435 (516)
.......+..|..+.+.|.+.|.|.|.|.|++++..+.....+..... ...+.|.|..+.. +|.|.|+|.|.|..
T Consensus 123 ---~~~~~~~~~~~~~~~~~c~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~-~d~g~YtC~a~N~~ 198 (218)
T 4frw_A 123 ---NPGPALEEGQGLTLAASCTAEGSPAPSVTWDTEVKGTTSSRSFKHSRSAAVTSEFHLVPSRS-MNGQPLTCVVSHPG 198 (218)
T ss_dssp ---EECSCEETTCCSEEEEEEEEEEBSCCEEEEEESSCCEEEEEEEECSSSEEEEEEEEECCCGG-GTTCEEEEEEECTT
T ss_pred ---eeeeeeeeeeccccceeeeccCCcCceEEEEECCcccccCceEecCCcEEEEEEEEEeeCCH-HhCeEEEEEEEeCC
Confidence 112234456788999999999999999999999876543222111000 0124799999999 99999999999999
Q ss_pred CceeEEEEEEE
Q psy7039 436 GSDSASCKVYV 446 (516)
Q Consensus 436 G~~s~s~~l~v 446 (516)
|..+..+.+.|
T Consensus 199 g~~~~~~t~~v 209 (218)
T 4frw_A 199 LLQDQRITHIL 209 (218)
T ss_dssp CSSCEEEEEEC
T ss_pred CCeEEEEEEEE
Confidence 98766655544
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=99.63 E-value=1.4e-15 Score=149.26 Aligned_cols=170 Identities=20% Similarity=0.215 Sum_probs=132.3
Q ss_pred eccccCCceEEEEEEEEccCCCCCceecccccccceEEE---EEecceeeEEEccCCCCCce-EEEEEEEecCCCcceeE
Q psy7039 235 DNNVHEGKAYEYRVSAVNAAGTEKPKISLDALIGKRIKE---FVTSTTASLNIKNSVRKDSG-IYKIEAKNDYGIDMADI 310 (516)
Q Consensus 235 ~~~l~~g~~~~~~~~~~~~~g~p~p~i~W~~~~~~~~~~---~~~~~~~~l~i~~l~~~d~g-~y~c~a~n~~g~~~~~~ 310 (516)
...+.+|+.+.+.|.+ .|.|.|.+.|.......... ........|.|.++...|+| .|+|.|.|..|.....+
T Consensus 167 ~~~v~~G~~v~L~C~~---~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~~Y~C~a~n~~g~~~~~~ 243 (347)
T 2ifg_A 167 NASVDVGDDVLLRCQV---EGRGLEQAGWILTELEQSATVMKSGGLPSLGLTLANVTSDLNRKNVTCWAENDVGRAEVSV 243 (347)
T ss_dssp SSCCBTTCCEEEEEEE---ECSSCCCCCEEESCCCSSEEECCCCCSSEEEEEEESCCSTTTTCCEEECCEETTEECCEEE
T ss_pred ceEEeCCCcEEEEEEE---ecCCCCEEEEEcCCceeecccccceecccceEEEeeCChHHCCCeEEEEEEcCCCCEEEEE
Confidence 4467889999999998 78899999997633221111 12456789999999999999 99999999998887777
Q ss_pred EEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeeecCCceEEE
Q psy7039 311 EVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWT 390 (516)
Q Consensus 311 ~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~ 390 (516)
.+.|..+|.+ .......|+.+.|.|.+.|.|.|.+.|+
T Consensus 244 ~l~V~~~P~i------------------------------------------~~~~~~~g~~v~l~C~~~g~P~p~i~W~ 281 (347)
T 2ifg_A 244 QVNVSFPASV------------------------------------------QLHTAVEMHHWCIPFSVDGQPAPSLRWL 281 (347)
T ss_dssp CCCCBEEEEE------------------------------------------EECCCEESSSEEEEEEEEEESCCEEEEE
T ss_pred EEEEcCCCee------------------------------------------eeccCccCceEEEEEEeeecCCCcEEEE
Confidence 7777554431 0012356889999999999999999999
Q ss_pred ECCeecCCCCceEEEEcC-------CeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEEEEecCC
Q psy7039 391 VNGDEVSPDGRIKFETSE-------NQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKP 450 (516)
Q Consensus 391 ~~~~~l~~~~~~~~~~~~-------~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~v~~~p 450 (516)
+++..+............ ....|.|.++.. .|+|.|+|.|.|..|..+.++.|.|..+|
T Consensus 282 ~~g~~l~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~-~d~G~Y~C~a~N~~G~~~~~~~l~V~~~P 347 (347)
T 2ifg_A 282 FNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTH-VNNGNYTLLAANPFGQASASIMAAFMDNP 347 (347)
T ss_dssp ETTEECCCCSSEEEEECCCCTTCCCEEEEEEESSCCG-GGCEEEEEEEEETTEEEEEEEEECSCCCC
T ss_pred eCCEECCCCcceeeEEEeecCCCcccceEEEECCCCc-ccCceEEEEEecCCCceeeEEEEEecCCC
Confidence 999988765554433222 246799999999 99999999999999999998888887654
|
| >1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3 | Back alignment and structure |
|---|
Probab=99.63 E-value=3e-15 Score=131.69 Aligned_cols=112 Identities=16% Similarity=0.154 Sum_probs=84.0
Q ss_pred eeEEEccCCCCCceEEEEEEEecCCCc--ceeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccc
Q psy7039 280 ASLNIKNSVRKDSGIYKIEAKNDYGID--MADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKIT 357 (516)
Q Consensus 280 ~~l~i~~l~~~d~g~y~c~a~n~~g~~--~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~ 357 (516)
+.|.|.+++.+|+|.|+|.|.|..|.. ...+.|.|...+..|.
T Consensus 61 gsL~I~~v~~~D~G~Y~C~~~n~~g~~~~~~~~~l~V~~~~~~p~----------------------------------- 105 (176)
T 1hng_A 61 GDLKIKNLTRDDSGTYNVTVYSTNGTRILNKALDLRILEMVSKPM----------------------------------- 105 (176)
T ss_dssp SCEEESSCCGGGCEEEEEEEEETTCCEEEEEEEEEEEECCCCCCE-----------------------------------
T ss_pred CcEEEcccccccCEEEEEEEEeCCCCEEEEEEEEEEEeCCCCCCE-----------------------------------
Confidence 358999999999999999999988876 5566777766433221
Q ss_pred cccccccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCc
Q psy7039 358 SDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGS 437 (516)
Q Consensus 358 ~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~ 437 (516)
....+..+.|.|.+.|.|.|.+.|++++..+..+.+ +.|..+.. .|.|.|+|.|.|..|.
T Consensus 106 --------i~~~~~~v~L~C~~~g~p~p~i~W~~~g~~l~~~~~-----------~~i~~~~~-~d~G~Y~C~a~N~~g~ 165 (176)
T 1hng_A 106 --------IYWECSNATLTCEVLEGTDVELKLYQGKEHLRSLRQ-----------KTMSYQWT-NLRAPFKCKAVNRVSQ 165 (176)
T ss_dssp --------EEEETTTTEEEEECSSCSSCEEEEEETTEEEEEESS-----------SEEEEECS-CCSSCEEEEEEETTEE
T ss_pred --------EEecCCcEEEEEEecCCCCcEEEEEECCEECCCCCc-----------EEEEEEEc-cCCeEEEEEEEecCCC
Confidence 112234588999999999999999999987644333 23335667 9999999999999998
Q ss_pred eeEEEEEEE
Q psy7039 438 DSASCKVYV 446 (516)
Q Consensus 438 ~s~s~~l~v 446 (516)
......|.+
T Consensus 166 ~~~~~~l~~ 174 (176)
T 1hng_A 166 ESEMEVVNC 174 (176)
T ss_dssp EEEEECCCC
T ss_pred ceecccccC
Confidence 877665543
|
| >1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C* | Back alignment and structure |
|---|
Probab=99.63 E-value=3.4e-15 Score=136.23 Aligned_cols=79 Identities=16% Similarity=0.175 Sum_probs=59.4
Q ss_pred EEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCC-----ceeE
Q psy7039 366 TVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVG-----SDSA 440 (516)
Q Consensus 366 ~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G-----~~s~ 440 (516)
.+.+|+.++|.|.+.+.+.+.+.|+++|..+... .........|.|.++.. .|+|.|+|.|.|..+ ..+.
T Consensus 116 ~v~~G~~v~L~C~~~~~~~~~~~W~k~g~~~~~~----~~~~~~~~~L~I~~v~~-~D~G~Y~C~a~n~~~~~~~s~~S~ 190 (218)
T 1uct_A 116 VLMPGENISLTCSSAHIPFDRFSLAKEGELSLPQ----HQSGEHPANFSLGPVDL-NVSGIYRCYGWYNRSPYLWSFPSN 190 (218)
T ss_dssp EECTTCCCEEEEECSSSCCSEEEEEETTCSSCCS----EEECSSSEEEECCSCCG-GGCEEEEEEEECTTSTTEECCCCC
T ss_pred ccCCCCCEEEEEeCCCCCCCEEEEEECCCccccc----ccCCCccCEEEEccCCc-ccCEEEEEEEEcCCCCCcCCCCCC
Confidence 5678999999997777777899999999876432 11234456899999999 999999999998642 2345
Q ss_pred EEEEEEecC
Q psy7039 441 SCKVYVVDK 449 (516)
Q Consensus 441 s~~l~v~~~ 449 (516)
.+.|.|.+.
T Consensus 191 ~~~l~V~g~ 199 (218)
T 1uct_A 191 ALELVVTDS 199 (218)
T ss_dssp CEEEEEC--
T ss_pred cEEEEEecC
Confidence 577777654
|
| >2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=2.2e-15 Score=141.82 Aligned_cols=230 Identities=13% Similarity=0.095 Sum_probs=142.9
Q ss_pred eCCeeEEEecCCCCCCCCceeceEEEEEeCCCCeEEeEEeecCCcEEEeCCC---cCCC--eEEEEEEEecCCCCCCCCC
Q psy7039 26 DKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVVVPAGETSCTVPGL---IEGE--TYQFQVRAVNAAGPGEASK 100 (516)
Q Consensus 26 ~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~i~~l---~~~~--~y~~~~~a~n~~g~~~~s~ 100 (516)
....+.|.+... +..+.-...+.|...+..... ........+.+..+ +..| .|.|+|.|.|..|...
T Consensus 17 ~G~~v~l~C~~~---g~~p~p~~~v~W~k~~~~l~~--~~~~~~~~~~~~~~~~~~~~d~g~g~Y~C~a~n~~~~~~--- 88 (265)
T 2oz4_A 17 VDTQGTVVCSLD---GLFPVSEAQVHLALGDQRLNP--TVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQE--- 88 (265)
T ss_dssp TTEEEEEEEEEE---SCSCGGGCEEEEEETTEECCC--EEEECSSEEEEEEEEEECGGGCEEEEEEEEEEETTEEEE---
T ss_pred cCCCEEEEEEcc---CCCCCcceEEEEEeCCEECCc--eEeeCCCeEEEEeecccccccCCcceEEEEEecCCCCcE---
Confidence 355677777652 111111224455544431100 11112335555544 4445 4569999999876532
Q ss_pred CCcceEeccCCCCCccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCee
Q psy7039 101 PTAPIVAKPKNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQV 180 (516)
Q Consensus 101 ~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~ 180 (516)
....+.+... .+|.+. +....+.+|+.+.|.|.+. |.+.++| ++..
T Consensus 89 ~~~~l~V~~~-p~p~~~---~~~~~v~~G~~v~l~C~~~----------------------------p~~~i~W--~g~~ 134 (265)
T 2oz4_A 89 TLQTVTIYSF-PAPNVI---LTKPEVSEGTEVTVKCEAH----------------------------PRAKVTL--NGVP 134 (265)
T ss_dssp EEEEEEEECC-CCCEEE---ESCSEEETTCEEEEEEECC----------------------------TTSEEEE--SSCS
T ss_pred EEEEEEEeCC-CCceee---cCCceecCCCcEEEEEEcc----------------------------CCCEEEE--CCEE
Confidence 2222333222 124443 3456688999999999874 6789999 6666
Q ss_pred eccCCceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCC-CceE---EEEEeecee---e------eeccccCCceEEEE
Q psy7039 181 CQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNL-GTAT---ASAHVTGTE---F------TDNNVHEGKAYEYR 247 (516)
Q Consensus 181 ~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~-g~~~---~~~~~~~~~---~------~~~~l~~g~~~~~~ 247 (516)
+.. .+....|.|..+..+|.|.|+|.+.|.. |... ....+.+.. + ....+.+|+.+.|.
T Consensus 135 ~~~--------~~~~~~l~i~~~~~~~~g~Y~C~a~n~~~g~~~~~s~~~~l~V~~~p~~~~~~~p~~~~v~~g~~~~l~ 206 (265)
T 2oz4_A 135 AQP--------LGPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPM 206 (265)
T ss_dssp SSC--------CSSEECCEEECCGGGTTEEEEEEEEEECSSSEEEEEEEEEEEEEEEEECCGGGSCSEEEEETTCEECCC
T ss_pred ccC--------CCCcEEEEEccccccCCceEEEEEEcCCCCCcccccccEEEEEEeCCccccccCCCccEEcCCCeEEEE
Confidence 532 2345678899999999999999998544 5544 222222211 1 12246779999999
Q ss_pred EEEEccCCCCCceecccccccceEEEEEecceeeEEEccCCCCCceEEEEEEEecCCCcceeEEEEEec
Q psy7039 248 VSAVNAAGTEKPKISLDALIGKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVS 316 (516)
Q Consensus 248 ~~~~~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~~~~l~v~~ 316 (516)
|.+ .|.|.|.+.|.+... .. ...+.+. .+..+|+|.|+|.|.|..|.....+.|.|..
T Consensus 207 C~~---~g~P~p~i~W~~~~~---~~---~~~g~~~--~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~ 264 (265)
T 2oz4_A 207 CQA---WGNPLPELKCLKDGT---FP---LPIGESV--TVTRDLEGTYLCRARSTQGEVTREVTVNVLS 264 (265)
T ss_dssp CCC---EEESCCEEEEEETTT---EE---CCTTSCE--ECCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred eEC---ccCCCCeEEEEECCc---cc---CCCCcEE--EeehhhCeEEEEEEECCCCcEEEEEEEEEec
Confidence 987 889999999976443 11 1122222 4888999999999999999988888888864
|
| >2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... | Back alignment and structure |
|---|
Probab=99.62 E-value=7.9e-16 Score=136.36 Aligned_cols=157 Identities=15% Similarity=0.157 Sum_probs=117.3
Q ss_pred cccCCceEEEEEEEEccCCCCCceecccccccceEE-----------------EEE-----ecceeeEEEccCCCCCceE
Q psy7039 237 NVHEGKAYEYRVSAVNAAGTEKPKISLDALIGKRIK-----------------EFV-----TSTTASLNIKNSVRKDSGI 294 (516)
Q Consensus 237 ~l~~g~~~~~~~~~~~~~g~p~p~i~W~~~~~~~~~-----------------~~~-----~~~~~~l~i~~l~~~d~g~ 294 (516)
.+.+|+.+.|.|.+ .+.+.+.+.|.+....... ... ......|.|.+++.+|+|.
T Consensus 6 ~~~~G~~v~L~C~~---~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~i~~v~~~D~G~ 82 (184)
T 2ny1_B 6 LGKKGDTVELTCTA---SQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDT 82 (184)
T ss_dssp EEETTSCEEECCBC---SSSSCCCEEEEETTCCEEEEEETTEEEECSCTTGGGEECCGGGGGGTBCCEEECSCCGGGCEE
T ss_pred EEeCCCCEEEEEEE---cCCCceEEEEEeCCccceEEecCceEecCChhhCCccccccccccCCeEEEEEecCCHHHCEE
Confidence 45689999999987 5888899999764321110 111 1124569999999999999
Q ss_pred EEEEEEecCCCcceeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEE
Q psy7039 295 YKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFT 374 (516)
Q Consensus 295 y~c~a~n~~g~~~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~ 374 (516)
|+|.+.|..+ .+.+.|...+.+ ....+..|+.+.
T Consensus 83 Y~C~~~~~~~----~~~l~V~~~~~~------------------------------------------~~~~v~~g~~~~ 116 (184)
T 2ny1_B 83 YICEVEDQKE----EVQLLVFGLTAN------------------------------------------SDTHLLQGQSLT 116 (184)
T ss_dssp EEEEETTEEE----EEEEEEEEEEES------------------------------------------SCSEEETTCCEE
T ss_pred EEEEEEcCCC----cEEEEEEEecCC------------------------------------------CCceeecCCCEE
Confidence 9999988754 344555432111 123678999999
Q ss_pred EEEEEeeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEEEEecCCCCC
Q psy7039 375 ITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPP 453 (516)
Q Consensus 375 l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~v~~~p~~P 453 (516)
|.|.+.+.|.+.+.|++++..+ .. ....|.|.++.. .|+|.|+|.|.|..|..+..+.|.|...|.+|
T Consensus 117 l~C~~~~~p~~~v~W~~~~~~~--------~~--~~~~L~i~~v~~-~d~G~Y~C~a~n~~~~~~~~~~l~V~~~p~~~ 184 (184)
T 2ny1_B 117 LTLESPPGSSPSVQCRSPRGKN--------IQ--GGKTLSVSQLEL-QDSGTWTCTVLQNQKKVEFKIDIVVLAFQKAS 184 (184)
T ss_dssp EEEECCTTCCCEEEEECTTSCE--------EE--ESSEEEESSCCG-GGCEEEEEEEEETTEEEEEEEEEEEECCCC--
T ss_pred EEEEcCCCCCCEEEEEeCCCcc--------cc--CceEEEEecCCc-CCCeEEEEEEEECCceEEEEEEEEEEecCCCC
Confidence 9999999999999999887543 11 224699999999 99999999999999999999999999887653
|
| >3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.62 E-value=3.6e-15 Score=133.59 Aligned_cols=168 Identities=13% Similarity=0.112 Sum_probs=116.0
Q ss_pred cccCCceEEEEEEEEccCCCCCceecccccccc--eEEE--EEecceeeEEEccCCCCCceEEEEEEEecCC--CcceeE
Q psy7039 237 NVHEGKAYEYRVSAVNAAGTEKPKISLDALIGK--RIKE--FVTSTTASLNIKNSVRKDSGIYKIEAKNDYG--IDMADI 310 (516)
Q Consensus 237 ~l~~g~~~~~~~~~~~~~g~p~p~i~W~~~~~~--~~~~--~~~~~~~~l~i~~l~~~d~g~y~c~a~n~~g--~~~~~~ 310 (516)
.+.+|+.+.|.|.+ .| +.+.+.|.+.... .... ........|.|.+++.+|+|.|+|.|.|..| ..+..+
T Consensus 15 ~v~~G~~v~L~C~~---~~-~~~~~~w~k~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~~ 90 (196)
T 3p2t_A 15 VISWGNSVTIWCQG---TL-EAREYRLDKEESPAPWDRQNPLEPKNKARFSIPSMTEDYAGRYRCYYRSPVGWSQPSDPL 90 (196)
T ss_dssp EEETTCCEEEEEEC---CT-TCCEEEEEETTSCSCSEEECCCSSSSEEEEEESSCCGGGCEEEEEEEEETTEEBCCCCCE
T ss_pred cCCCCCcEEEEeeC---CC-CCCEEEEEECCCCCcccccccccCCceEEEEeccCCcccCceEEEEEeCCCcccCCCccE
Confidence 56789999999987 56 6678888652211 1111 1124668999999999999999999999987 335567
Q ss_pred EEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeeecCCceEEE
Q psy7039 311 EVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWT 390 (516)
Q Consensus 311 ~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~ 390 (516)
.|.|...+..|.. . ......+..|+.+.|.|.+.+. .+.+.|+
T Consensus 91 ~l~V~~~~~~p~~--~----------------------------------~~~~~~v~~G~~v~L~C~~~~~-~~~~~w~ 133 (196)
T 3p2t_A 91 ELVMTGAYSKPTL--S----------------------------------ALPSPLVTSGKSVTLLCQSRSP-MDTFLLC 133 (196)
T ss_dssp EEEEECSSCCCEE--E----------------------------------EESCSEECTTCCEEEEEEEEEE-EEEEEEE
T ss_pred EEEecCCCCCCEE--E----------------------------------eCCcceecCCCeEEEEEecCCC-CCEEEEE
Confidence 7777654433210 0 0111256899999999999885 4589999
Q ss_pred ECCeecCCCCc-eEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCc-----eeEEEEEEE
Q psy7039 391 VNGDEVSPDGR-IKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGS-----DSASCKVYV 446 (516)
Q Consensus 391 ~~~~~l~~~~~-~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~-----~s~s~~l~v 446 (516)
+++..+..... ...........|.|.++.. .|+|.|+|.|.|..+. .+....|.|
T Consensus 134 k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~-~d~G~Y~C~a~n~~~~~~~s~~S~~~~l~V 194 (196)
T 3p2t_A 134 KERAAHPLLCLRSEHGAQQHQAEFPMSPVTS-VHGGTYRCFSSHGFSHYLLSHPSDPLELIV 194 (196)
T ss_dssp ETTCCCGGGSEEEEEEEEEEEEEEEECSCCG-GGCEEEEEEEECGGGTTEECCCCCCEEEEE
T ss_pred eCCCcccceeecccccccCcceEEEeCCCcc-cCCCeEEEEEEcCCCCcccCCCCCCEEEEe
Confidence 99976643321 1122223446799999999 9999999999999862 344455554
|
| >3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.61 E-value=8.5e-15 Score=131.12 Aligned_cols=158 Identities=13% Similarity=0.111 Sum_probs=109.6
Q ss_pred CCccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEeec
Q psy7039 113 APRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTT 192 (516)
Q Consensus 113 ~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~ 192 (516)
+|.|. ..+.. .+.+|+.+.|.|.+. + +.+.+.|++++..+.... ......
T Consensus 5 ~P~i~-~~p~~-~v~~G~~v~L~C~~~--------------------------~-~~~~~~w~k~g~~~~~~~-~~~~~~ 54 (196)
T 3p2t_A 5 KPTLW-AEPGS-VISWGNSVTIWCQGT--------------------------L-EAREYRLDKEESPAPWDR-QNPLEP 54 (196)
T ss_dssp CCEEE-EESCS-EEETTCCEEEEEECC--------------------------T-TCCEEEEEETTSCSCSEE-ECCCSS
T ss_pred CCEEE-ccCCC-cCCCCCcEEEEeeCC--------------------------C-CCCEEEEEECCCCCcccc-cccccC
Confidence 55555 33344 788999999999998 6 678999999988765321 111112
Q ss_pred CCeeEEEeccCCCCCCeeEEEEEEcCCCc----eEEEEEeec----eee---eeccccCCceEEEEEEEEccCCCCCcee
Q psy7039 193 KSETVLDIPFCSRSDTGHYSLTLENNLGT----ATASAHVTG----TEF---TDNNVHEGKAYEYRVSAVNAAGTEKPKI 261 (516)
Q Consensus 193 ~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~----~~~~~~~~~----~~~---~~~~l~~g~~~~~~~~~~~~~g~p~p~i 261 (516)
.....|.|.+++.+|+|.|+|.+.|..|. ....+.+.. ..+ ....+.+|+.+.|.|.+ .+ +++.+
T Consensus 55 ~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~~~l~V~~~~~~p~~~~~~~~~v~~G~~v~L~C~~---~~-~~~~~ 130 (196)
T 3p2t_A 55 KNKARFSIPSMTEDYAGRYRCYYRSPVGWSQPSDPLELVMTGAYSKPTLSALPSPLVTSGKSVTLLCQS---RS-PMDTF 130 (196)
T ss_dssp SSEEEEEESSCCGGGCEEEEEEEEETTEEBCCCCCEEEEEECSSCCCEEEEESCSEECTTCCEEEEEEE---EE-EEEEE
T ss_pred CceEEEEeccCCcccCceEEEEEeCCCcccCCCccEEEEecCCCCCCEEEeCCcceecCCCeEEEEEec---CC-CCCEE
Confidence 45679999999999999999999998772 122222211 111 12246789999999988 44 34678
Q ss_pred ccccccc----c--eEEEEEecceeeEEEccCCCCCceEEEEEEEecCC
Q psy7039 262 SLDALIG----K--RIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYG 304 (516)
Q Consensus 262 ~W~~~~~----~--~~~~~~~~~~~~l~i~~l~~~d~g~y~c~a~n~~g 304 (516)
.|.+... . ............|.|.++..+|+|.|+|.|.|..+
T Consensus 131 ~w~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~ 179 (196)
T 3p2t_A 131 LLCKERAAHPLLCLRSEHGAQQHQAEFPMSPVTSVHGGTYRCFSSHGFS 179 (196)
T ss_dssp EEEETTCCCGGGSEEEEEEEEEEEEEEEECSCCGGGCEEEEEEEECGGG
T ss_pred EEEeCCCcccceeecccccccCcceEEEeCCCcccCCCeEEEEEEcCCC
Confidence 8865211 1 11222234567899999999999999999999876
|
| >3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A | Back alignment and structure |
|---|
Probab=99.61 E-value=3.9e-14 Score=129.25 Aligned_cols=133 Identities=17% Similarity=0.178 Sum_probs=93.5
Q ss_pred ceeeEEEccCCCCCceEEEEEEEecCCCcceeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccc
Q psy7039 278 TTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKIT 357 (516)
Q Consensus 278 ~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~ 357 (516)
....|.|.+++.+|+|.|+|.+.| .|.....+.|.|..++..+..
T Consensus 78 ~~~~L~I~~v~~~D~G~Y~C~~~~-~~~~~~~~~l~V~~~~~~~~~---------------------------------- 122 (222)
T 3sbw_C 78 GNAALQITDVKLQDAGVYRCMISY-GGADYKRITVKVNAPYNKINQ---------------------------------- 122 (222)
T ss_dssp TEEEEEESSCCGGGCEEEEEEEES-SSEEEEEEEEEEEBCCCCCEE----------------------------------
T ss_pred CEEEEEEcCcccccCeEEEEEEEe-CCCceeEEEEEEECCCCCCCc----------------------------------
Confidence 346899999999999999999999 566666777888755443211
Q ss_pred cccccccEEEEcCCeEEEEEEEeeecCCceEEEEC-CeecCCCCceEEEEc--CCeEEEEEcCceecCCceEEEEEEEcC
Q psy7039 358 SDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVN-GDEVSPDGRIKFETS--ENQTIYRNKSAKRATDSGSYTIQLVNT 434 (516)
Q Consensus 358 ~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~-~~~l~~~~~~~~~~~--~~~~~l~i~~~~~~~~~g~y~c~a~n~ 434 (516)
.....+..|+.+.|.|.+.|.|.|.+.|+++ +..+........... +......+..+.. .|.|.|+|.|.|.
T Consensus 123 ----~~~~~~~~g~~v~L~C~~~g~P~p~i~W~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~v~~-~d~g~Y~C~a~n~ 197 (222)
T 3sbw_C 123 ----RILVVDPVTSEHELTCQAEGYPKAEVIWTSSDHQVLSGKTTTTNSKREEKLFNVTSTLRINT-TTNEIFYCTFRRL 197 (222)
T ss_dssp ----EEEEEETTTTEEEEEEEEEEBSCCEEEEEETTCCEECCEEEEEECC----CEEEEEEEEEEC-CTTCEEEEEEEET
T ss_pred ----eeeeeecCCCcEEEEEEecCCCCCeEEEEECCCceecCccceEEEcCCCCCEEEEEEEEEec-cCCcEEEEEEEeC
Confidence 0112456889999999999999999999998 555433222211111 1111222224567 8999999999999
Q ss_pred CCceeEEEEEEEecCC
Q psy7039 435 VGSDSASCKVYVVDKP 450 (516)
Q Consensus 435 ~G~~s~s~~l~v~~~p 450 (516)
.|....++.|.|...|
T Consensus 198 ~g~~~~~~~l~v~~~p 213 (222)
T 3sbw_C 198 DPEENHTAELVIPELP 213 (222)
T ss_dssp TTTEEEEEEEECCCC-
T ss_pred ccceeeEEEEEecCCc
Confidence 9999999999887554
|
| >3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=6.9e-15 Score=132.79 Aligned_cols=172 Identities=20% Similarity=0.233 Sum_probs=123.1
Q ss_pred ccccCCceEEEEEEEEccCCCCCceecccccc----cceEEEE-----------------EecceeeEEEccCCCCCceE
Q psy7039 236 NNVHEGKAYEYRVSAVNAAGTEKPKISLDALI----GKRIKEF-----------------VTSTTASLNIKNSVRKDSGI 294 (516)
Q Consensus 236 ~~l~~g~~~~~~~~~~~~~g~p~p~i~W~~~~----~~~~~~~-----------------~~~~~~~l~i~~l~~~d~g~ 294 (516)
..+.+|+.+.|.|.+ .+.+.+.+.|.+.. ...+... ....++.|.|.+++..|+|.
T Consensus 9 ~~v~~G~~v~L~C~~---~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~L~i~~v~~~D~G~ 85 (208)
T 3r4d_A 9 PQVAEDNNVLLLVHN---LPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGSLLFQMITMKDMGV 85 (208)
T ss_dssp SEEETTCCEEEEEEC---CCSSCSEEEEEESSCCCGGGEEEEEEGGGTEEEECTTCCSSEEECTTSCEEECSCCGGGCEE
T ss_pred ceeecCCcEEEEEeC---CCCCceEEEeccCCCCCccceEEEEecCCCccccCccccceeEEecCCeEEEccccccCCeE
Confidence 456789999999985 67788899996521 1111000 01133579999999999999
Q ss_pred EEEEEEecC-CCcceeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeE
Q psy7039 295 YKIEAKNDY-GIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEF 373 (516)
Q Consensus 295 y~c~a~n~~-g~~~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~ 373 (516)
|+|.+.|.. +.....+.|.|...+..|.. . .... . +..|+.+
T Consensus 86 Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~i--~---------------------------------~~~~-~-~~~g~~v 128 (208)
T 3r4d_A 86 YTLDMTDENYRRTQATVRFHVHQPVTQPFL--Q---------------------------------VTNT-T-VKELDSV 128 (208)
T ss_dssp EEEEEECSSCEEEEEEEEEEEECCCCCCEE--E---------------------------------ESCS-S-CCTTCCE
T ss_pred EEEEEEcccCceeEEEEEEEeccCCCCCEE--e---------------------------------cCCc-e-EeeCCCE
Confidence 999999985 45566677777655443311 0 0011 1 6789999
Q ss_pred EEEEEEeeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCce-eEEEEEEEecCCC
Q psy7039 374 TITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSD-SASCKVYVVDKPS 451 (516)
Q Consensus 374 ~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~-s~s~~l~v~~~p~ 451 (516)
.|.|.+.+.| +.+.|++++..+..+.++.+.... ..|.|.++.. .|.|.|+|.|.|..|.. +..+.|.|..++.
T Consensus 129 ~l~C~~~~~p-p~i~W~~~g~~l~~~~~~~~~~~~--~~L~i~~v~~-~d~G~Y~C~a~N~~g~~~s~~~~l~v~~~~~ 203 (208)
T 3r4d_A 129 TLTCLSNDIG-ANIQWLFNSQSLQLTERMTLSQNN--SILRIDPIKR-EDAGEYQCEISNPVSVRRSNSIKLDIIFDPH 203 (208)
T ss_dssp EEEEECSCTT-CEEEEEETTEECCCCSSEEEETTT--TEEEESSCCG-GGCEEEEEEEECTTCCEECCCEEECCC----
T ss_pred EEEEECCCCC-CceEEEECCEeCCCCCCeEEcCCC--CEEEEeccCH-HhCeEEEEEEecCCCcccCCceeeeEEeCCc
Confidence 9999999866 799999999998777777655332 5799999999 99999999999999984 5557777665543
|
| >2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R* | Back alignment and structure |
|---|
Probab=99.61 E-value=5.9e-15 Score=134.11 Aligned_cols=167 Identities=17% Similarity=0.099 Sum_probs=113.1
Q ss_pred cccceEEecC--CeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeC---CeeeccCCceEEeecCC
Q psy7039 120 TLNDVKIKAG--QSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSIN---GQVCQIGGRADVQTTKS 194 (516)
Q Consensus 120 ~~~~~~v~~g--~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~---~~~~~~~~~~~~~~~~~ 194 (516)
.+..+.+.+| +.+.|.|.+. + |.+.++|++. +..+....++... .
T Consensus 13 ~p~~v~v~eG~~~~v~L~C~~~--------------------------~-p~~~v~w~~~~~~g~~~~~~~~~~~~---~ 62 (213)
T 2x1w_L 13 QHGVVYITENKNKTVVIPCLGS--------------------------I-SNLNVSLCARYPEKRFVPDGNRISWD---S 62 (213)
T ss_dssp -CEEEEECCSTTCEEEECCCBS--------------------------S-TTCCEEEEEETTTEEECCCSSSCEEE---T
T ss_pred CceEEEEecCCCccEEEeeccC--------------------------C-CCcEEEEEhhcCCCccccCCCccccc---C
Confidence 3467889999 9999999998 6 6689999874 5555444444332 2
Q ss_pred eeEEEeccCCCCCCeeEEEEEEcCCCceEE---EEEeec---eee----ee-ccccCCceEEEEEEEEccCCCC--Ccee
Q psy7039 195 ETVLDIPFCSRSDTGHYSLTLENNLGTATA---SAHVTG---TEF----TD-NNVHEGKAYEYRVSAVNAAGTE--KPKI 261 (516)
Q Consensus 195 ~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~---~~~~~~---~~~----~~-~~l~~g~~~~~~~~~~~~~g~p--~p~i 261 (516)
...|.|.+++.+|+|.|+|.+.|..+.... .+.+.. ..+ .. ..+.+|+.+.|.|.+ .|.| .+.+
T Consensus 63 ~~~l~I~~v~~~D~G~Y~C~a~n~~~~~~s~~~~l~v~~~~~p~~~~~~~~~~~v~~G~~v~L~C~~---~g~p~~~~~i 139 (213)
T 2x1w_L 63 KKGFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTA---RTELNVGIDF 139 (213)
T ss_dssp TTEEEEEGGGTTTCSEEEEEEC----CEECCCEEEEECBCCEEEEEEESCSCEEEETTCCEEEEEEE---EECTTBCCEE
T ss_pred CccEEEccCChhcCceEEEEEEECCeeEEEEEEEEEEeCCcccceEEcCCCCeEEcCCCCEEEEEEE---ECCCCCceEE
Confidence 347999999999999999999885443322 222211 111 11 156789999999998 5533 4578
Q ss_pred cccccccc--eEEE---EE--------ecceeeEEEccCCCCCceEEEEEEEecCCCcceeEEEEEecCCC
Q psy7039 262 SLDALIGK--RIKE---FV--------TSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPG 319 (516)
Q Consensus 262 ~W~~~~~~--~~~~---~~--------~~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~ 319 (516)
.|...... .... .. ......|.|.+++.+|+|.|+|.|.|..|.....+.|.|...|.
T Consensus 140 ~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~~p~ 210 (213)
T 2x1w_L 140 NWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEDPI 210 (213)
T ss_dssp EEECSCSSCCSEEEEEEEECCCSSCSCEEEEEEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEEC---
T ss_pred EEEecCCccceEEEeccccccccCccceeeeEEEEECCCCcccCEEEEEEEecCCCcEEEEEEEEEecccc
Confidence 99653221 1111 10 12245799999999999999999999999998899999987664
|
| >3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C* | Back alignment and structure |
|---|
Probab=99.60 E-value=3.4e-15 Score=134.76 Aligned_cols=160 Identities=13% Similarity=0.046 Sum_probs=114.9
Q ss_pred ccccCCceEEEEEEEEccCCCCCce-ecccccccceEEEEEecceeeEEEccCCCCCceEEEEEEEecCCCcceeEEEEE
Q psy7039 236 NNVHEGKAYEYRVSAVNAAGTEKPK-ISLDALIGKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVV 314 (516)
Q Consensus 236 ~~l~~g~~~~~~~~~~~~~g~p~p~-i~W~~~~~~~~~~~~~~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~~~~l~v 314 (516)
..+.+|+.+.|.|.+ .|.+.+. +.|.+... . .......|.|.+++.+|+|.|+|.+.|. ..+..+.|.|
T Consensus 17 ~~v~~G~~v~L~C~~---~~~p~~~~v~W~k~g~-~----l~~~~~~L~i~~v~~~D~G~Y~C~a~n~--~~s~~~~l~V 86 (204)
T 3sgj_C 17 YRVLEKDSVTLKCQG---AYSPEDQSTQWFHNES-L----ISSQASSYFIDAATVDDSGEYRCQTQLS--TLSDPVQLEV 86 (204)
T ss_dssp SEEETTCCEEEEEEC---CSSSSCCCEEEEETTE-E----ESCCSSEEEESSCCGGGCEEEEEEETTS--BCCCCEEEEE
T ss_pred eEEECCCCEEEEEcC---CCCCCCcEEEEEECCE-E----cccCccEEEEecccccCCEEEEEEeCCC--cccccEEEEE
Confidence 457889999999998 7777665 99976321 1 1233489999999999999999999874 3444566777
Q ss_pred ecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeee-cCCceEEEECC
Q psy7039 315 VSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGR-PKPTPIWTVNG 393 (516)
Q Consensus 315 ~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~-p~~~i~W~~~~ 393 (516)
...|... ......+.+|+.+.|.|.+.+. |.+.+.|++++
T Consensus 87 ~~~p~~~---------------------------------------~~~~~~v~~G~~v~L~C~~~~~~p~~~v~W~k~g 127 (204)
T 3sgj_C 87 HIGWLLL---------------------------------------QAPRWVFKEEDPIHLRCHSWKNTALHKVTYLQNG 127 (204)
T ss_dssp ECSSEEE---------------------------------------ECSCSEEETTCCEEEEEEEGGGCCCEEEEEEETT
T ss_pred ecCceEe---------------------------------------cCCceeEeCCCcEEEEEEecCCCCCceEEEEECC
Confidence 6543210 1122467899999999999766 55789999999
Q ss_pred eecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcC-CCceeEEEEEEEecCCCCC
Q psy7039 394 DEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNT-VGSDSASCKVYVVDKPSPP 453 (516)
Q Consensus 394 ~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~-~G~~s~s~~l~v~~~p~~P 453 (516)
..+.. ......|.|.++.. .|+|.|+|.|.|. .+..+..+.|.|..+|..|
T Consensus 128 ~~~~~--------~~~~~~L~i~~v~~-~D~G~Y~C~a~n~~~~~~s~~~~l~V~~~~~~P 179 (204)
T 3sgj_C 128 KGRKY--------FHHNSDFYIPKATL-KDSGSYFCRGLVGSKNVSSETVQITITQGLAVS 179 (204)
T ss_dssp EEEEE--------EEECCCEEESSCCG-GGCEEEEEEEEETTEEEECCCEEEEEEC-----
T ss_pred cEeec--------ccCCceEEECcCCc-ccCEEEEEEEEeCCCceecCcEEEEEeCcCCCC
Confidence 76421 11224699999999 9999999999994 4556778899998877666
|
| >2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R* | Back alignment and structure |
|---|
Probab=99.60 E-value=2.8e-15 Score=136.30 Aligned_cols=176 Identities=15% Similarity=0.063 Sum_probs=115.4
Q ss_pred eeccccCC--ceEEEEEEEEccCCCCCceeccccc--ccceE----EEEEecceeeEEEccCCCCCceEEEEEEEecCCC
Q psy7039 234 TDNNVHEG--KAYEYRVSAVNAAGTEKPKISLDAL--IGKRI----KEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGI 305 (516)
Q Consensus 234 ~~~~l~~g--~~~~~~~~~~~~~g~p~p~i~W~~~--~~~~~----~~~~~~~~~~l~i~~l~~~d~g~y~c~a~n~~g~ 305 (516)
....+.+| +.+.|.|.+ .+ |.+.++|.+. .+... ... ......|.|.+++.+|+|.|+|.|.|..+.
T Consensus 15 ~~v~v~eG~~~~v~L~C~~---~~-p~~~v~w~~~~~~g~~~~~~~~~~-~~~~~~l~I~~v~~~D~G~Y~C~a~n~~~~ 89 (213)
T 2x1w_L 15 GVVYITENKNKTVVIPCLG---SI-SNLNVSLCARYPEKRFVPDGNRIS-WDSKKGFTIPSYMISYAGMVFCEAKINDES 89 (213)
T ss_dssp EEEEECCSTTCEEEECCCB---SS-TTCCEEEEEETTTEEECCCSSSCE-EETTTEEEEEGGGTTTCSEEEEEEC----C
T ss_pred eEEEEecCCCccEEEeecc---CC-CCcEEEEEhhcCCCccccCCCccc-ccCCccEEEccCChhcCceEEEEEEECCee
Confidence 34556789 999999987 55 6688888542 11110 111 123457999999999999999999985443
Q ss_pred cce-eEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeeecC
Q psy7039 306 DMA-DIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPK 384 (516)
Q Consensus 306 ~~~-~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~ 384 (516)
... .+.|.|.. +.+|. +.+ .....+.+..|+.+.|.|.+.|.|.
T Consensus 90 ~~s~~~~l~v~~-~~~p~--~~~--------------------------------~~~~~~~v~~G~~v~L~C~~~g~p~ 134 (213)
T 2x1w_L 90 YQSIMYIVVVVG-YRIYD--VVL--------------------------------SPSHGIELSVGEKLVLNCTARTELN 134 (213)
T ss_dssp EECCCEEEEECB-CCEEE--EEE--------------------------------ESCSCEEEETTCCEEEEEEEEECTT
T ss_pred EEEEEEEEEEeC-Ccccc--eEE--------------------------------cCCCCeEEcCCCCEEEEEEEECCCC
Confidence 322 25555533 11110 000 1123357899999999999998654
Q ss_pred --CceEEEECCeecCCCCc-eEEEE-------cCCeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEEEEecCC
Q psy7039 385 --PTPIWTVNGDEVSPDGR-IKFET-------SENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKP 450 (516)
Q Consensus 385 --~~i~W~~~~~~l~~~~~-~~~~~-------~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~v~~~p 450 (516)
+.+.|++++..+..... ..... ......|.|.++.. .|+|.|+|.|.|..|..+.++.|.|..+|
T Consensus 135 ~~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~-~D~G~Y~C~a~N~~g~~~~~~~l~V~~~p 209 (213)
T 2x1w_L 135 VGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTR-SDQGLYTCAASSGLMTKKNSTFVRVHEDP 209 (213)
T ss_dssp BCCEEEEECSCSSCCSEEEEEEEECCCSSCSCEEEEEEEEESSCCG-GGCEEEEEEEECSSCEEEEEEEEEEEC--
T ss_pred CceEEEEEecCCccceEEEeccccccccCccceeeeEEEEECCCCc-ccCEEEEEEEecCCCcEEEEEEEEEeccc
Confidence 47999998876432211 10100 11235799999999 99999999999999999999999998765
|
| >3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A | Back alignment and structure |
|---|
Probab=99.60 E-value=1.5e-14 Score=126.21 Aligned_cols=159 Identities=13% Similarity=0.120 Sum_probs=116.7
Q ss_pred CccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcC-ceeeEEeeCCeeeccCCceEEeec
Q psy7039 114 PRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEP-FLNHGWSINGQVCQIGGRADVQTT 192 (516)
Q Consensus 114 p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~i~W~~~~~~~~~~~~~~~~~~ 192 (516)
|.+. ..+..+.+.+|+.+.|.|.+. +.| .+.+.|++++..+...
T Consensus 5 p~i~-~~p~~~~v~~G~~v~l~C~~~--------------------------~~p~~~~~~W~~~g~~~~~~-------- 49 (170)
T 3ry4_A 5 AVLK-LEPPWINVLQEDSVTLTCQGA--------------------------RSPESDSIQWFHNGNLIPTH-------- 49 (170)
T ss_dssp CEEE-EESCCSEEETTCEEEEEEESC--------------------------CCSSSSCEEEEETTEECTTC--------
T ss_pred CEEE-eCCCCeEEECCCcEEEEEEec--------------------------CCCCcceEEEEECCeEcccC--------
Confidence 4444 445557789999999999999 766 6799999999887643
Q ss_pred CCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEEeece----eeeeccccCCceEEEEEEEEccCCCCCceeccccccc
Q psy7039 193 KSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVTGT----EFTDNNVHEGKAYEYRVSAVNAAGTEKPKISLDALIG 268 (516)
Q Consensus 193 ~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~~~~----~~~~~~l~~g~~~~~~~~~~~~~g~p~p~i~W~~~~~ 268 (516)
...+.|.+++.+|+|.|+|.+.+........+.+... ......+.+|+.+.+.|.+. .|.|.+.+.|.+..
T Consensus 50 --~~~~~~~~~~~~d~G~Y~C~~~~~~~s~~~~l~v~~~~~~~~~~~~~~~~g~~~~l~C~~~--~~~p~~~~~W~~~g- 124 (170)
T 3ry4_A 50 --TQPSYRFKANNNDSGEYTCQTGQTSLSDPVHLTVLFEWLVLQTPHLEFQEGETIMLRCHSW--KDKPLVKVTFFQNG- 124 (170)
T ss_dssp --CSSEEEEECCGGGCEEEEEEETTSBCCCCEEEEEECCSEEEECSCSEECTTCCEEEEEEEG--GGCCEEEEEEEETT-
T ss_pred --ccceEEEecccccCeEEEEEEeCCCceEeEEEEEECCceEecCCCceeecCCeEEEEEECC--CCCCCceEEEEECC-
Confidence 2346778999999999999999866655544443321 11234567899999999882 45677899997622
Q ss_pred ceEEEEEecceeeEEEccCCCCCceEEEEEEEecCCC-cceeEEEEE
Q psy7039 269 KRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGI-DMADIEVVV 314 (516)
Q Consensus 269 ~~~~~~~~~~~~~l~i~~l~~~d~g~y~c~a~n~~g~-~~~~~~l~v 314 (516)
.. +........|.|.++..+|+|.|+|.|.|..|. .+..+.|.|
T Consensus 125 ~~--~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V 169 (170)
T 3ry4_A 125 KS--QKFSHLDPTFSIPQANHSHSGDYHCTGNIGYTLFSSKPVTITV 169 (170)
T ss_dssp EE--EEEESSCCEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEE
T ss_pred eE--ccccCCCCeEEEEeccccCCEEEEEEEEeCcCccccccEEEEE
Confidence 22 223445678999999999999999999999886 444555554
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=99.60 E-value=3.4e-15 Score=146.51 Aligned_cols=176 Identities=14% Similarity=0.132 Sum_probs=132.1
Q ss_pred CCCCccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEe
Q psy7039 111 NLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQ 190 (516)
Q Consensus 111 ~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~ 190 (516)
..+|.+. ..+..+.+.+|+.+.|.|.+. +.|.+.+.|++++..+..... ..
T Consensus 156 c~~P~i~-~~~~~~~v~~G~~v~L~C~~~--------------------------g~p~p~i~W~~~~~~~~~~~~--~~ 206 (347)
T 2ifg_A 156 CGVPTLK-VQVPNASVDVGDDVLLRCQVE--------------------------GRGLEQAGWILTELEQSATVM--KS 206 (347)
T ss_dssp CCCCEEE-EECCSSCCBTTCCEEEEEEEE--------------------------CSSCCCCCEEESCCCSSEEEC--CC
T ss_pred CCCCcee-ccCCceEEeCCCcEEEEEEEe--------------------------cCCCCEEEEEcCCceeecccc--cc
Confidence 3467776 556778899999999999999 999999999998865432111 11
Q ss_pred ecCCeeEEEeccCCCCCCe-eEEEEEEcCCCceEEEEEeeceee---eeccccCCceEEEEEEEEccCCCCCceeccccc
Q psy7039 191 TTKSETVLDIPFCSRSDTG-HYSLTLENNLGTATASAHVTGTEF---TDNNVHEGKAYEYRVSAVNAAGTEKPKISLDAL 266 (516)
Q Consensus 191 ~~~~~~~l~i~~~~~~d~g-~Y~c~~~~~~g~~~~~~~~~~~~~---~~~~l~~g~~~~~~~~~~~~~g~p~p~i~W~~~ 266 (516)
......+|.|.+++..|+| .|+|.+.|..|.......+.+... .......|+.+.+.|.+ .|.|.|.+.|.+.
T Consensus 207 ~~~~~~~L~i~~v~~~D~G~~Y~C~a~n~~g~~~~~~~l~V~~~P~i~~~~~~~g~~v~l~C~~---~g~P~p~i~W~~~ 283 (347)
T 2ifg_A 207 GGLPSLGLTLANVTSDLNRKNVTCWAENDVGRAEVSVQVNVSFPASVQLHTAVEMHHWCIPFSV---DGQPAPSLRWLFN 283 (347)
T ss_dssp CCSSEEEEEEESCCSTTTTCCEEECCEETTEECCEEECCCCBEEEEEEECCCEESSSEEEEEEE---EEESCCEEEEEET
T ss_pred eecccceEEEeeCChHHCCCeEEEEEEcCCCCEEEEEEEEEcCCCeeeeccCccCceEEEEEEe---eecCCCcEEEEeC
Confidence 2345679999999999999 999999999887766554333221 23345678999999998 7889999999652
Q ss_pred -----ccceEEEEEe-------cceeeEEEccCCCCCceEEEEEEEecCCCcceeEEEEEecCC
Q psy7039 267 -----IGKRIKEFVT-------STTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKP 318 (516)
Q Consensus 267 -----~~~~~~~~~~-------~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p 318 (516)
.......... ...+.|.|.+++.+|+|.|+|.|.|..|....++.+.|..+|
T Consensus 284 g~~l~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~P 347 (347)
T 2ifg_A 284 GSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMDNP 347 (347)
T ss_dssp TEECCCCSSEEEEECCCCTTCCCEEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEECSCCCC
T ss_pred CEECCCCcceeeEEEeecCCCcccceEEEECCCCcccCceEEEEEecCCCceeeEEEEEecCCC
Confidence 1112221111 236679999999999999999999999998888888876654
|
| >1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.59 E-value=3.9e-14 Score=125.97 Aligned_cols=126 Identities=14% Similarity=0.104 Sum_probs=81.9
Q ss_pred eeEEEccCCCCCceEEEEEEEecCCC--cceeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccc
Q psy7039 280 ASLNIKNSVRKDSGIYKIEAKNDYGI--DMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKIT 357 (516)
Q Consensus 280 ~~l~i~~l~~~d~g~y~c~a~n~~g~--~~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~ 357 (516)
..|.|.+++.+|+|.|+|.+.|..+. .+..+.|.|......|. +.
T Consensus 57 ~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~s~~~~l~V~~~~~~p~--i~------------------------------- 103 (188)
T 1oll_A 57 VKFYIPDMNSRMAGQYSCIYRVGELWSEPSNLLDLVVTEMYDTPT--LS------------------------------- 103 (188)
T ss_dssp EEEEESSCCGGGCEEEEEEEEETTEECCCCCCEEEEEESCSCCCE--EE-------------------------------
T ss_pred eEEEeCcCCcccCeEEEEEecCCCCCCCCCCceEEEecccCCCCe--EE-------------------------------
Confidence 45666677777777777777665432 23455666654332221 00
Q ss_pred cccccccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCC-
Q psy7039 358 SDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVG- 436 (516)
Q Consensus 358 ~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G- 436 (516)
......+.+|+.+.|.|.+.+. .+.+.|++++..+.. ..........|.|.++.. .|+|.|+|.|.|...
T Consensus 104 ---~~p~~~v~~G~~v~L~C~~~~~-~~~~~w~k~g~~~~~----~~~~~~~~~~L~I~~v~~-~d~G~Y~C~a~n~~~~ 174 (188)
T 1oll_A 104 ---VHPGPEVISGEKVTFYCRLDTA-TSMFLLLKEGRSSHV----QRGYGKVQAEFPLGPVTT-AHRGTYRCFGSYNNHA 174 (188)
T ss_dssp ---EESCSEEETTCEEEEEEECSSS-CSEEEEEEESSSCEE----EEEECSSEEEEEEEECCG-GGCEEEEEECEEETTE
T ss_pred ---ECCCCccccCCEEEEEEEcCCC-CCEEEEEECCccccc----cccCCCceeEEEECCCCc-CCCcEEEEEEEcCCCc
Confidence 0112357899999999998764 568999999876532 122344567899999999 999999999998752
Q ss_pred --ceeEEEEEEEe
Q psy7039 437 --SDSASCKVYVV 447 (516)
Q Consensus 437 --~~s~s~~l~v~ 447 (516)
..+..+.|.|.
T Consensus 175 ~s~~S~~~~l~V~ 187 (188)
T 1oll_A 175 WSFPSEPVKLLVT 187 (188)
T ss_dssp ECCCCCCEEEEEE
T ss_pred CCCCCCcEEEEec
Confidence 23444556554
|
| >3lpw_A A77-A78 domain from titin; intracellular FNIII-tandem, structural protein; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.7e-13 Score=122.35 Aligned_cols=181 Identities=29% Similarity=0.478 Sum_probs=125.5
Q ss_pred CCCCCCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCC-CeEEeEEeecCCcEEEeCCCcCCCeEEEEEEE
Q psy7039 11 FDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTG-NWEKAVVVPAGETSCTVPGLIEGETYQFQVRA 89 (516)
Q Consensus 11 ~~~p~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~-~~~~~~~~~~~~~~~~i~~l~~~~~y~~~~~a 89 (516)
.++|++|.+|++..++.+++.|+|.+|..+++.++.+|.|+++..+. .|..... ....+++.|.+|.+++.|.|+|+|
T Consensus 3 ~~~P~~P~~l~~~~~~~~sv~l~W~~p~~~~~~~i~~Y~v~~~~~~~~~~~~~~~-~~~~~~~~~~~L~p~t~Y~~~V~a 81 (197)
T 3lpw_A 3 MDTPGPPQDLKVKEVTKTSVTLTWDPPLLDGGSKIKNYIVEKRESTRKAYSTVAT-NCHKTSWKVDQLQEGCSYYFRVLA 81 (197)
T ss_dssp CCSCCCCEEEEEEEECSSCEEEEEECCSCCTTSCCCEEEEEEEETTCSSCEEEEE-EECSSEEEECCCCTTCEEEEEEEE
T ss_pred CCCCCCCCCcEEEEecCCEEEEEEcCCccCCCCcccEEEEEEEECCCCccEEeec-CCCccEEEEcCCCCCCEEEEEEEE
Confidence 57899999999999999999999999876777789999999998766 6766543 457899999999999999999999
Q ss_pred ecCCCCCCCCCCCcceEeccCCCCCccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCc
Q psy7039 90 VNAAGPGEASKPTAPIVAKPKNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPF 169 (516)
Q Consensus 90 ~n~~g~~~~s~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 169 (516)
.|..|.+.++...........+.+| ..+. +... +...
T Consensus 82 ~~~~g~~~~s~~~~~~t~~~~p~~p-------~~~~----------~~~~--------------------------~~~~ 118 (197)
T 3lpw_A 82 ENEYGIGLPAETAESVKASERPLPP-------GKIT----------LMDV--------------------------TRNS 118 (197)
T ss_dssp EETTEECCCEECSSCEESCCCCCCC-------SCEE----------EEEE--------------------------CSSC
T ss_pred EcCccccCCCCCccceecCCCCCCC-------cccE----------EEec--------------------------cCCe
Confidence 9999988766554444443333333 1121 2222 3445
Q ss_pred eeeEEeeCCeeec-cCCceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCce-EEEEEeeceeeeeccccCCceEEEE
Q psy7039 170 LNHGWSINGQVCQ-IGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTA-TASAHVTGTEFTDNNVHEGKAYEYR 247 (516)
Q Consensus 170 ~~i~W~~~~~~~~-~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~-~~~~~~~~~~~~~~~l~~g~~~~~~ 247 (516)
..+.|......-. ... .|........+.. ..........+.+.+|.+|..|.++
T Consensus 119 v~l~W~~p~~~~~~~i~------------------------~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~L~p~t~Y~~~ 174 (197)
T 3lpw_A 119 VSLSWEKPEHDGGSRIL------------------------GYIVEMQTKGSDKWATCATVKVTEATITGLIQGEEYSFR 174 (197)
T ss_dssp EEEEECCCSCCTTSCCC------------------------EEEEEEEETTCSCCEEEEEESSSEEEECCCCTTCEEEEE
T ss_pred EEEEecCCCcCCCCccc------------------------EEEEEEEeCCCCceEEeecccccEEEeCCcCCCCEEEEE
Confidence 6778865322100 000 3444433322222 1222344567788999999999999
Q ss_pred EEEEccCCCCCc
Q psy7039 248 VSAVNAAGTEKP 259 (516)
Q Consensus 248 ~~~~~~~g~p~p 259 (516)
+.|++..|...+
T Consensus 175 V~A~n~~G~s~~ 186 (197)
T 3lpw_A 175 VSAQNEKGISDP 186 (197)
T ss_dssp EEEEETTEECCC
T ss_pred EEEEeCCccCCC
Confidence 999998886554
|
| >2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.8e-14 Score=134.07 Aligned_cols=173 Identities=18% Similarity=0.144 Sum_probs=118.6
Q ss_pred ccccCCceEEEEEEEEccCCCCCceecccccccce--EEEEE--------------------------------ecceee
Q psy7039 236 NNVHEGKAYEYRVSAVNAAGTEKPKISLDALIGKR--IKEFV--------------------------------TSTTAS 281 (516)
Q Consensus 236 ~~l~~g~~~~~~~~~~~~~g~p~p~i~W~~~~~~~--~~~~~--------------------------------~~~~~~ 281 (516)
..+.+|+.+.|.|.+......+.+.+.|.+..... ..+.. ......
T Consensus 12 v~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 91 (250)
T 2fbo_J 12 VEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGDFLGRASVANLAAPT 91 (250)
T ss_dssp EEECTTSCEEECCEEEECSCCSCCEEEEEEEEETTEEEEEEEEEECCCBTTBCCCTTSEEEEECGGGTTTEECSCTTSCC
T ss_pred eEEecCCeEEEEEEeEcCCCCCceEEEEEeCCCCCccEEEEeeccccccccccccccccccccCCCcCceEEeccCCcce
Confidence 35678999999998843334788999997643221 11110 001358
Q ss_pred EEEccCCCCCceEEEEEEEecCCCc-----ceeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeecccc
Q psy7039 282 LNIKNSVRKDSGIYKIEAKNDYGID-----MADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKI 356 (516)
Q Consensus 282 l~i~~l~~~d~g~y~c~a~n~~g~~-----~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~ 356 (516)
|.|.+++.+|+|.|+|.+.|..+.. ...+.|.|...+.++.. .+
T Consensus 92 L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~--~~----------------------------- 140 (250)
T 2fbo_J 92 LRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHTPSNNV--HV----------------------------- 140 (250)
T ss_dssp EEECSCCGGGCEEEEEEEECTTCCSGGGEEEEEEEEEETTTSCCSCC--EE-----------------------------
T ss_pred EEEeeCChhhCeEEEEEeccCccCCcccccceeEEEEEeccCCCCeE--EE-----------------------------
Confidence 9999999999999999999987754 33677777665433321 00
Q ss_pred ccccccccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceE----------------------EEEcCCeEEEE
Q psy7039 357 TSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIK----------------------FETSENQTIYR 414 (516)
Q Consensus 357 ~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~----------------------~~~~~~~~~l~ 414 (516)
.......+..|+.+.|.|.+.+.|.|.+.|++++..+....... ... .....|.
T Consensus 141 ---~~~~~~~v~~g~~v~L~C~~~g~p~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~L~ 216 (250)
T 2fbo_J 141 ---STAEVVQVDEGNDITMTCPCTDCANANVTWYTGPTFFENYETGTYQPLANKNQFGITWFSSEIAGRASF-SGARNLV 216 (250)
T ss_dssp ---CCCSEEECCTTCCEEECCCEESCTTCEEEEEEEEECSSCSSSCEEEEEEEECTTSCEEECTTTTTSEEE-ETTTEEE
T ss_pred ---ecCceEEecCCCcEEEEEEecCCCCCeeEEEeCCCcccccccCcceeEeccCCCCccccCceEeccccc-CCccEEE
Confidence 12234566789999999999999999999999988764422110 000 0224799
Q ss_pred EcCceecCCceEEEEEEEcCCCc---eeEEEEE
Q psy7039 415 NKSAKRATDSGSYTIQLVNTVGS---DSASCKV 444 (516)
Q Consensus 415 i~~~~~~~~~g~y~c~a~n~~G~---~s~s~~l 444 (516)
|.++.. .|+|.|+|.|.|..|. ...++.|
T Consensus 217 i~~v~~-~D~G~Y~C~a~N~~g~~g~~~~~~~l 248 (250)
T 2fbo_J 217 IRAAKI-TDAGRVWCELATGQGELDADRSSTIL 248 (250)
T ss_dssp ECSCCG-GGCEEEEEEEESSSSGGGEEEEEEEE
T ss_pred EecCCc-ccCEEEEEEecCCccccCccceeEEE
Confidence 999999 9999999999996664 4444444
|
| >3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.59 E-value=1.1e-13 Score=122.39 Aligned_cols=156 Identities=18% Similarity=0.194 Sum_probs=114.7
Q ss_pred eEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCce--eeEEeeCCeeeccCCceEEeecCCeeEEEec
Q psy7039 124 VKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFL--NHGWSINGQVCQIGGRADVQTTKSETVLDIP 201 (516)
Q Consensus 124 ~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~ 201 (516)
..+.+|+.+.|.|.+. +.+.+ .+.|++++..+...... .....|.|.
T Consensus 8 ~~v~~G~~v~l~C~~~--------------------------~~~~p~~~~~W~k~~~~l~~~~~~-----~~~~~l~i~ 56 (184)
T 3b5h_A 8 TVEDLGSKILLTCSLN--------------------------DSATEVTGHRWLKGGVVLKEDALP-----GQKTEFKVD 56 (184)
T ss_dssp EEEEETTEEEEEEEEE--------------------------SCSSCCCEEEEESSSEEEECTTCC-----CSEEEEEEC
T ss_pred EEEecCCCEEEEEECC--------------------------CCCCCceEEEEEeCCEEeeccccc-----CCcEEEEEe
Confidence 5678999999999998 76666 89999999888654322 224466666
Q ss_pred cCCCCCCeeEEEEEEcCCCceEEEEEeece-ee----eeccccCCceEEEEEEEEccCCCC-Cceecccc---cc-----
Q psy7039 202 FCSRSDTGHYSLTLENNLGTATASAHVTGT-EF----TDNNVHEGKAYEYRVSAVNAAGTE-KPKISLDA---LI----- 267 (516)
Q Consensus 202 ~~~~~d~g~Y~c~~~~~~g~~~~~~~~~~~-~~----~~~~l~~g~~~~~~~~~~~~~g~p-~p~i~W~~---~~----- 267 (516)
+.+|+|.|+|.+.|... ....+.+... .+ ....+.+|..+.+.|.+ .|.| .|.+.|.+ ..
T Consensus 57 --~~~d~G~Y~C~~~n~~~-~~~~l~V~~~P~~~~~~~~~~~~~g~~~~l~C~~---~g~p~~~~i~W~~~~~~~~~~~~ 130 (184)
T 3b5h_A 57 --SDDQWGEYSCVFLPEPM-GTANIQLHGPPRVKAVKSSEHINEGETAMLVCKS---ESVPPVTDWAWYKITDSEDKALM 130 (184)
T ss_dssp --GGGCCEEEEEEEESTTS-CEEEEEECCSCCCEESCSEEEECTTSCEEEEEEC---CCSSCCCEEEEEECCSSSCEECC
T ss_pred --chhhCeEEEEEEECCcC-cEEEEEEecCCceeecCCCcEEcCCCcEEEEEEE---CCCCCCCeEEEEEcCCCCCEEee
Confidence 68999999999997332 3333333221 11 12346789999999988 7888 79999966 11
Q ss_pred ---cceEEEEEecceeeEEEccCC-CCCceEEEEEEEecCCCcceeEEEEEec
Q psy7039 268 ---GKRIKEFVTSTTASLNIKNSV-RKDSGIYKIEAKNDYGIDMADIEVVVVS 316 (516)
Q Consensus 268 ---~~~~~~~~~~~~~~l~i~~l~-~~d~g~y~c~a~n~~g~~~~~~~l~v~~ 316 (516)
..++.+........|.|.++. ..|.|.|+|.|.|..|.....+.|.|..
T Consensus 131 ~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~ 183 (184)
T 3b5h_A 131 NGSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRVRS 183 (184)
T ss_dssp TTGGGTEEEEEETTEEEEEECSCCTTTSSEEEEEEEEETTEEEEEEEEEEEC-
T ss_pred cCCCCEEEEEecCCeeEEEEeeccccccCceEEEEEEeCCCcceEEEEEEEec
Confidence 133444445556799999999 9999999999999999988888887753
|
| >2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.6e-14 Score=129.31 Aligned_cols=158 Identities=12% Similarity=0.067 Sum_probs=102.4
Q ss_pred CCccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEeec
Q psy7039 113 APRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTT 192 (516)
Q Consensus 113 ~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~ 192 (516)
+|.|. ..+. ..+.+|+.+.|.|.+. +.|. .+.|++++..+....+ .....
T Consensus 5 ~P~i~-~~p~-~~v~~G~~v~L~C~~~--------------------------~~~~-~~~W~k~g~~~~~~~~-~~~~~ 54 (196)
T 2d3v_A 5 KATLW-AEPG-SVISRGNSVTIRCQGT--------------------------LEAQ-EYRLVKEGSPEPWDTQ-NPLEP 54 (196)
T ss_dssp BCEEE-EESC-SEEETTCCEEEEEECC--------------------------TTCC-EEEEEETTCSSCSEEE-CCCSS
T ss_pred CCEEE-eCCC-CcccCCCeEEEEEeCC--------------------------CCCc-EEEEEECCCCCCcccc-cccCC
Confidence 55555 2333 3788999999999998 7765 9999999876643211 11123
Q ss_pred CCeeEEEeccCCCCCCeeEEEEEEcCCCceE----EEEEeec----eeee---eccccCCceEEEEEEEEccCCCCCcee
Q psy7039 193 KSETVLDIPFCSRSDTGHYSLTLENNLGTAT----ASAHVTG----TEFT---DNNVHEGKAYEYRVSAVNAAGTEKPKI 261 (516)
Q Consensus 193 ~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~----~~~~~~~----~~~~---~~~l~~g~~~~~~~~~~~~~g~p~p~i 261 (516)
.....|.|.+++.+|+|.|+|.+.|..|... ..+.+.. ..+. ...+.+|+.+.|.|.+ .|.| +.+
T Consensus 55 ~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~~~l~V~~~~~~p~i~~~~~~~v~~G~~v~L~C~~---~~~p-~~~ 130 (196)
T 2d3v_A 55 KNKARFSIPSMTEHHAGRYRCYYYSPAGWSEPSDPLELVVTGFYNKPTLSALPSPVVTSGENVTLQCGS---RLRF-DRF 130 (196)
T ss_dssp TTEEEEEESSCCGGGCEEEEEEEEETTEECBCCCCEEEEEECSSCCCEEEC-----------CEEEEEE---SSCC-SEE
T ss_pred ccccEEEeccCChhHCeEEEEEEeCCCCcCCcCccEEEEecCCCCCCeEEccCCccccCCCcEEEEEEc---CCCC-CEE
Confidence 4567999999999999999999988765322 2222221 1111 2357789999999998 7777 899
Q ss_pred cccccccce--EEE--EEe---cceeeEEEccCCCCCceEEEEEEEecCC
Q psy7039 262 SLDALIGKR--IKE--FVT---STTASLNIKNSVRKDSGIYKIEAKNDYG 304 (516)
Q Consensus 262 ~W~~~~~~~--~~~--~~~---~~~~~l~i~~l~~~d~g~y~c~a~n~~g 304 (516)
.|.+..... ... ... .....|.|.+++.+|+|.|+|.|.|..+
T Consensus 131 ~W~k~g~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~ 180 (196)
T 2d3v_A 131 ILTEEGDHKLSWTLDSQLTPSGQFQALFPVGPVTPSHRWMLRCYGSRRHI 180 (196)
T ss_dssp EEEEC---CCEEEEECEECTTSCEEEEEECCCCBTTBCEEEEEEEEETTE
T ss_pred EEEccCCcccccccccccccCCCceeEEEeeecCcccCeeEEEEEEccCC
Confidence 997632211 111 111 2347899999999999999999999754
|
| >2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.58 E-value=8.5e-15 Score=131.16 Aligned_cols=158 Identities=15% Similarity=0.072 Sum_probs=101.5
Q ss_pred cccCCceEEEEEEEEccCCCCCceecccccccce---EE-EEEecceeeEEEccCCCCCceEEEEEEEecCCCc--ceeE
Q psy7039 237 NVHEGKAYEYRVSAVNAAGTEKPKISLDALIGKR---IK-EFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGID--MADI 310 (516)
Q Consensus 237 ~l~~g~~~~~~~~~~~~~g~p~p~i~W~~~~~~~---~~-~~~~~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~--~~~~ 310 (516)
.+.+|+.+.|.|.+ .|.+. .+.|.+..... .. .........|.|.+++..|+|.|+|.|.|..|.. +..+
T Consensus 15 ~v~~G~~v~L~C~~---~~~~~-~~~W~k~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~~ 90 (196)
T 2d3v_A 15 VISRGNSVTIRCQG---TLEAQ-EYRLVKEGSPEPWDTQNPLEPKNKARFSIPSMTEHHAGRYRCYYYSPAGWSEPSDPL 90 (196)
T ss_dssp EEETTCCEEEEEEC---CTTCC-EEEEEETTCSSCSEEECCCSSTTEEEEEESSCCGGGCEEEEEEEEETTEECBCCCCE
T ss_pred cccCCCeEEEEEeC---CCCCc-EEEEEECCCCCCcccccccCCccccEEEeccCChhHCeEEEEEEeCCCCcCCcCccE
Confidence 56789999999997 56554 88996532111 11 1123467889999999999999999999987643 4457
Q ss_pred EEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeeecCCceEEE
Q psy7039 311 EVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWT 390 (516)
Q Consensus 311 ~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~ 390 (516)
.|.|...+..|.. . ......+.+|+.+.|.|.+.+.| +.+.|+
T Consensus 91 ~l~V~~~~~~p~i----~--------------------------------~~~~~~v~~G~~v~L~C~~~~~p-~~~~W~ 133 (196)
T 2d3v_A 91 ELVVTGFYNKPTL----S--------------------------------ALPSPVVTSGENVTLQCGSRLRF-DRFILT 133 (196)
T ss_dssp EEEEECSSCCCEE----E--------------------------------C-----------CEEEEEESSCC-SEEEEE
T ss_pred EEEecCCCCCCeE----E--------------------------------ccCCccccCCCcEEEEEEcCCCC-CEEEEE
Confidence 7777664322210 0 11224678999999999999998 899999
Q ss_pred ECCeecCCCCceEEEE--cCCeEEEEEcCceecCCceEEEEEEEcCCC
Q psy7039 391 VNGDEVSPDGRIKFET--SENQTIYRNKSAKRATDSGSYTIQLVNTVG 436 (516)
Q Consensus 391 ~~~~~l~~~~~~~~~~--~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G 436 (516)
+++..+.......... ......|.|.++.. .|+|.|+|.|.|..+
T Consensus 134 k~g~~~~~~~~~~~~~~~~~~~~~L~I~~v~~-~D~G~Y~C~a~n~~~ 180 (196)
T 2d3v_A 134 EEGDHKLSWTLDSQLTPSGQFQALFPVGPVTP-SHRWMLRCYGSRRHI 180 (196)
T ss_dssp EC---CCEEEEECEECTTSCEEEEEECCCCBT-TBCEEEEEEEEETTE
T ss_pred ccCCcccccccccccccCCCceeEEEeeecCc-ccCeeEEEEEEccCC
Confidence 9997653221110111 12236899999999 999999999999865
|
| >2vkw_A Neural cell adhesion molecule 1,140 kDa isoform; adhesion receptor; 2.3A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 2vkx_A 1lwr_A | Back alignment and structure |
|---|
Probab=99.57 E-value=1.5e-13 Score=124.25 Aligned_cols=185 Identities=19% Similarity=0.195 Sum_probs=121.4
Q ss_pred CCCCCCCCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCC-CeEEeEEee---cCCcEEEeCCCcCCCeEE
Q psy7039 9 NPFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTG-NWEKAVVVP---AGETSCTVPGLIEGETYQ 84 (516)
Q Consensus 9 ~~~~~p~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~-~~~~~~~~~---~~~~~~~i~~l~~~~~y~ 84 (516)
...++|++|.++.+..+++ ++.|+|.+|..+++.+|.+|.|+|+..+. .|....... ...++++|.+|++++.|.
T Consensus 4 ~~~~~P~~P~~~~~~~~~~-s~~l~W~~p~~~~g~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~ 82 (209)
T 2vkw_A 4 AQADTPSSPSIDQVEPYSS-TAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASMEGIVTIVGLKPETTYA 82 (209)
T ss_dssp -CCCCCCCCEEEEEEECSS-CEEEEEECCSCCCSSCCCEEEEEEEESSCCCCEEEEEEHHHHHHHSEEEECCCCTTCEEE
T ss_pred cccCCCcCCcccEeeeccC-eEEEEEcCCCcCCCcceeEEEEEEeeCCCCCceEeEeeccCCCccceEEeCCCCCCCeEE
Confidence 3578999999999998776 79999999976777789999999998776 787665432 236789999999999999
Q ss_pred EEEEEecCCCCCCCCCCCcceEeccCCCCCccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceee
Q psy7039 85 FQVRAVNAAGPGEASKPTAPIVAKPKNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVK 164 (516)
Q Consensus 85 ~~~~a~n~~g~~~~s~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (516)
|+|+|.|..|.+.++......+... .+| ..+. .+.+...
T Consensus 83 ~~V~A~n~~G~~~~s~~~~~~T~~~--~~P----~~P~----------~~~~~~~------------------------- 121 (209)
T 2vkw_A 83 VRLAALNGKGLGEISAASEFKTQPV--REP----SAPK----------LEGQMGE------------------------- 121 (209)
T ss_dssp EEEEEEETTEECCCCCCEEEECCCS--CSC----CCCE----------EEEEECT-------------------------
T ss_pred EEEEEEcCCcccCCcccccccccCC--CCC----CCCc----------ccccccc-------------------------
Confidence 9999999999887665433222111 022 1111 1222222
Q ss_pred cCcCceeeEEeeCCeeeccCCceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEEe--eceeeeeccccCCc
Q psy7039 165 LSEPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHV--TGTEFTDNNVHEGK 242 (516)
Q Consensus 165 ~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~--~~~~~~~~~l~~g~ 242 (516)
+.....+.|......-.... .|...+....+.......+ ....+.+.+|.+|.
T Consensus 122 -~~~sv~l~W~~p~~~~~~i~------------------------~Y~v~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t 176 (209)
T 2vkw_A 122 -DGNSIKVNLIKQDDGGSPIR------------------------HYLVRYRALSSEWKPEIRLPSGSDHVMLKSLDWNA 176 (209)
T ss_dssp -TSSCEEEEEECCCCTTSCCC------------------------EEEEEEEETTSCCCCCEEECTTCCEEEECSCCTTC
T ss_pred -cCCeEEEEEECcccCCCCCc------------------------eEEEEEECCCCCCceeeecCCCccEEEecCCCCCC
Confidence 44567788876411000001 3444433311111111122 23567888999999
Q ss_pred eEEEEEEEEccCCCCCce
Q psy7039 243 AYEYRVSAVNAAGTEKPK 260 (516)
Q Consensus 243 ~~~~~~~~~~~~g~p~p~ 260 (516)
.|.+++.|.+..|...+.
T Consensus 177 ~Y~~~V~A~n~~G~s~~S 194 (209)
T 2vkw_A 177 EYEVYVVAENQQGKSKAA 194 (209)
T ss_dssp EEEEEEEEEETTEECCCE
T ss_pred EEEEEEEEEeCCccCCcc
Confidence 999999999998876554
|
| >1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A | Back alignment and structure |
|---|
Probab=99.57 E-value=8.7e-14 Score=125.20 Aligned_cols=165 Identities=15% Similarity=0.064 Sum_probs=111.3
Q ss_pred cceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCC-eeeccCCceEEeecCCeeEEEe
Q psy7039 122 NDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSING-QVCQIGGRADVQTTKSETVLDI 200 (516)
Q Consensus 122 ~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~-~~~~~~~~~~~~~~~~~~~l~i 200 (516)
..+.+.+|+.+.|.|.+. |.|.+.+.|++.. ..+. . .....+....|.|
T Consensus 9 ~~~~~~~G~~v~L~C~~~--------------------------g~P~p~i~W~~~~~~~~~--~--~~~~~~~~~~L~I 58 (202)
T 1vca_A 9 SRYLAQIGDSVSLTCSTT--------------------------GCESPFFSWRTQIDSPLN--G--KVTNEGTTSTLTM 58 (202)
T ss_dssp SEEEEETTSCEEEEEEEE--------------------------SCSSCEEEEEETTCCCCS--S--EEEEETTEEEEEE
T ss_pred CcEEEcCCCcEEEEEeec--------------------------CCCCCeEEEECCCCCCcc--c--eEEEcCCccEEEE
Confidence 335566999999999999 9999999998832 2211 1 1222445667999
Q ss_pred ccCCCCCCeeEEEEEEcCCCceEEEEEeeceee-------eeccccCCceEEEEEEEEccCCC-CC--ceecccccccce
Q psy7039 201 PFCSRSDTGHYSLTLENNLGTATASAHVTGTEF-------TDNNVHEGKAYEYRVSAVNAAGT-EK--PKISLDALIGKR 270 (516)
Q Consensus 201 ~~~~~~d~g~Y~c~~~~~~g~~~~~~~~~~~~~-------~~~~l~~g~~~~~~~~~~~~~g~-p~--p~i~W~~~~~~~ 270 (516)
.+++.+|+|.|.|.+.|..|.....+.+.+... ....+.+|+.+.+.|.+ .|. |. +.+.|.+....-
T Consensus 59 ~~v~~~D~G~Y~C~a~n~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~G~~~~L~C~~---~~~~p~~~~~i~W~k~~~~l 135 (202)
T 1vca_A 59 NPVSFGNEHSYLCTATCESRKLEKGIQVEIYSFPKDPEIHLSGPLEAGKPITVKCSV---ADVYPFDRLEIDLLKGDHLM 135 (202)
T ss_dssp SSCCGGGCSEEEEEEEETTEEEEEEEEEEEEBCCSCCEEEESSCEETTSCEEEEEEE---EEEBSGGGEEEEEEETTEEE
T ss_pred CcCCHHHCEEEEEEEEECCceEeeEEEEEEEeCCCCCEeCCceEEcCCCCEEEEEEE---CCcCCCCCeEEEEEeCCeEC
Confidence 999999999999999998876655444333211 12457789999999998 443 33 478896532111
Q ss_pred EEEEE---------ecceeeEEEccCCCCCceEEEEEEEecCCCc-------ceeEEEEEecCCC
Q psy7039 271 IKEFV---------TSTTASLNIKNSVRKDSGIYKIEAKNDYGID-------MADIEVVVVSKPG 319 (516)
Q Consensus 271 ~~~~~---------~~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~-------~~~~~l~v~~~p~ 319 (516)
..... ......|.|.....+|.|.|+|.|.|..|.. +.+..|.|..+|.
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~l~i~~~~~d~~g~ytC~A~n~~~~~~~~~~~~~~~~~L~V~y~P~ 200 (202)
T 1vca_A 136 KSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDEMDSVPTVRQAVKELQVYISPK 200 (202)
T ss_dssp EEEECCSCCSSCCCEEEEEEEEECCCGGGTTCEEEEEEEECSCCCTTSCSEEEEEEECCEECCC-
T ss_pred cccccccccCcCcceEEEEEEEEEeeeccCCCeEEEEEEccccCCCCcceeEeeEEEEEEecCCC
Confidence 11111 1123456788888889999999999987763 3456677776653
|
| >3se4_A Interferon alpha/beta receptor 1; type I interferon signaling complex, extracellular space, IM system receptor; HET: NAG; 3.50A {Homo sapiens} PDB: 3se3_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=1.9e-13 Score=137.37 Aligned_cols=80 Identities=16% Similarity=0.253 Sum_probs=51.2
Q ss_pred CCCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCC-CeEEe---EEeecCCcEEEeCCCcCCCeEEEEEEE
Q psy7039 14 PGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTG-NWEKA---VVVPAGETSCTVPGLIEGETYQFQVRA 89 (516)
Q Consensus 14 p~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~-~~~~~---~~~~~~~~~~~i~~l~~~~~y~~~~~a 89 (516)
+.+|.++++... +..+.|+|.+|. ++++++. |.|+|+..+. .|... .......+.++..+|.+...|.|+|+|
T Consensus 8 l~~P~nv~~~~~-~~~~~L~W~p~~-~~~~~i~-Y~V~y~~~~~~~W~~~~~c~~~~~~~~~~t~~~l~~~~~Y~~rV~A 84 (414)
T 3se4_A 8 LKSPQKVEVDII-DDNFILRWNRSD-ESVGNVT-FSFDYQKTGMDNWIKLSGCQNITSTKCNFSSLKLNVYEEIKLRIRA 84 (414)
T ss_dssp ---CCCCCEEEE-TTEEEEC-----------CE-EEEEEEESSCCCCEEEEEEEEESCSCEECCSSCCCTTSCEEEEEEE
T ss_pred CCCCceeEEEEE-CCceEEEEcCCC-CCCCCeE-EEEEEEECCCCCcEECcCccCCCCCEEECCcccccCCCcEEEEEEE
Confidence 457999999976 567899999985 4445677 9999998654 78753 233344556666788999999999999
Q ss_pred ecCCCCCC
Q psy7039 90 VNAAGPGE 97 (516)
Q Consensus 90 ~n~~g~~~ 97 (516)
.| .+.+.
T Consensus 85 ~n-~~~S~ 91 (414)
T 3se4_A 85 EK-ENTSS 91 (414)
T ss_dssp EE-TTEEE
T ss_pred ee-CCcCC
Confidence 99 54443
|
| >2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 | Back alignment and structure |
|---|
Probab=99.56 E-value=1.3e-13 Score=128.24 Aligned_cols=184 Identities=17% Similarity=0.123 Sum_probs=120.0
Q ss_pred ccccCCceEEEEEEEEccCCCC--Cceecccccc------------------------cceEEEEEe--cceeeEEEccC
Q psy7039 236 NNVHEGKAYEYRVSAVNAAGTE--KPKISLDALI------------------------GKRIKEFVT--STTASLNIKNS 287 (516)
Q Consensus 236 ~~l~~g~~~~~~~~~~~~~g~p--~p~i~W~~~~------------------------~~~~~~~~~--~~~~~l~i~~l 287 (516)
..+.+|+.+.|.|.+ .|.| .+.+.|.+.. ..++.+... .....|.|.++
T Consensus 12 ~~v~~G~~v~L~C~~---~g~p~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v 88 (247)
T 2ghw_B 12 GVVQPGKSLRLSCAA---SGFAFSSYAMHWVRQAPGKGLEWVAVISYDGSNKYYADSVKGRFTISRDNSKNTLYLQMNSL 88 (247)
T ss_dssp EEECTTCCEEEEEEE---ESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEETTTTEEEEEECSC
T ss_pred EEEecCCcEEEEEEe---ccccCCCceEEEEEeCCCCceEEEEEEecCCCceeeCccccCcEEEEEeCCCCEEEEEECcC
Confidence 456789999999998 5665 6789996521 122333222 34568999999
Q ss_pred CCCCceEEEEEEEecCCC--cceeEEEEEecCCCCCC-CCceeeeccCCeeEEEecCCCCCCCCceeecccccccccccc
Q psy7039 288 VRKDSGIYKIEAKNDYGI--DMADIEVVVVSKPGPPT-GPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRD 364 (516)
Q Consensus 288 ~~~d~g~y~c~a~n~~g~--~~~~~~l~v~~~p~~p~-~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~ 364 (516)
+.+|+|.|+|.|.|..+. ......|.|...+.... .++. . ...++ .+ ...+..
T Consensus 89 ~~~D~G~Y~C~~~n~~~~~~~~~~~~l~V~~~~~~~~~~~~~--~--------~~~~~------~~--------~~~~~~ 144 (247)
T 2ghw_B 89 RAEDTAVYYCARDRSYYLDYWGQGTLVTVSSGGGGSGGGGSG--G--------GGSET------TL--------TQSPAT 144 (247)
T ss_dssp CGGGCEEEEEEEEETTEEEEECCCEEEEECSCC----------------------CCC------CE--------EEECSE
T ss_pred CHHHCEEEEEeeeccCCccccCCceEEEEecccccccccccC--C--------CCcce------EE--------EccCCE
Confidence 999999999999997322 22345666665432100 0000 0 00000 00 012345
Q ss_pred EEEEcCCeEEEEEEEeeecCCceEEEE--CCeec------------CCCCceEEEEcCCeEEEEEcCceecCCceEEEEE
Q psy7039 365 MTVLAGEEFTITVPFSGRPKPTPIWTV--NGDEV------------SPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQ 430 (516)
Q Consensus 365 ~~v~~g~~~~l~C~~~g~p~~~i~W~~--~~~~l------------~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~ 430 (516)
..+.+|+.+.|.|.+.+.+.+.+.|++ ++..+ ....++..........|+|.++.. .|+|.|+|.
T Consensus 145 ~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~-~D~G~Y~C~ 223 (247)
T 2ghw_B 145 LSLSPGERATLSCRASQSVRSNLAWYQQKPGQAPRPLIYDASTRATGIPDRFSGSGSGTDFTLTISRLEP-EDFAVYYCQ 223 (247)
T ss_dssp EEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEECSSSEEEEEECSCCG-GGCEEEEEE
T ss_pred EEecCCCcEEEEEEeCCCccceEEEEEECCCCCcEEEEEEeccCCCccCCCEEEecCCCeEEEEECcCCH-HHCEEEEEE
Confidence 678899999999999999989999998 44432 123566665556667899999999 999999999
Q ss_pred EEcCCCce-eEEEEEEEe
Q psy7039 431 LVNTVGSD-SASCKVYVV 447 (516)
Q Consensus 431 a~n~~G~~-s~s~~l~v~ 447 (516)
|.|..+.. .....|.|.
T Consensus 224 a~~~~~~~~g~~t~l~V~ 241 (247)
T 2ghw_B 224 QRSNWPPTFGQGTKVEVK 241 (247)
T ss_dssp ECSSSSCEECCCEEEEEC
T ss_pred EccCCCceEcCCEEEEEC
Confidence 99865442 334566665
|
| >2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.4e-14 Score=128.40 Aligned_cols=150 Identities=15% Similarity=0.097 Sum_probs=108.2
Q ss_pred cccCCceEEEEEEEEccCCCCCceecccccccceEEEEEecceeeEEEccCCCCCceEEEEEEEecCCC--cceeEEEEE
Q psy7039 237 NVHEGKAYEYRVSAVNAAGTEKPKISLDALIGKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGI--DMADIEVVV 314 (516)
Q Consensus 237 ~l~~g~~~~~~~~~~~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~l~i~~l~~~d~g~y~c~a~n~~g~--~~~~~~l~v 314 (516)
.+.+|+.+.|.|.+ .| +.+.+.|.+.... .......|.|.+++.+|+|.|+|.+.|..|. .+..+.|.|
T Consensus 18 ~v~~G~~v~L~C~~---~~-~~~~~~W~k~g~~-----~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~~~l~V 88 (184)
T 2gi7_A 18 LVPLEKPVTLRCQG---PP-GVDLYRLEKLSSS-----RYQDQAVLFIPAMKRSLAGRYRCSYQNGSLWSLPSDQLELVA 88 (184)
T ss_dssp EEETTCCEEEEEEC---ST-TCSEEEEEETTTC-----CEESSSEEEESSCCGGGCEEEEEEEEETTEEBCCCCCEEEEE
T ss_pred cccCCCcEEEEEeC---CC-CCCEEEEEECCcc-----ccCcccEEEECcCChhhCceEEEEEEcCCCccCCCCCEEEEe
Confidence 56789999999997 56 7788999764332 2245678999999999999999999998763 344567777
Q ss_pred ecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeeecCCceEEEECCe
Q psy7039 315 VSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGD 394 (516)
Q Consensus 315 ~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~ 394 (516)
......|. +. ......+..|+.+.|.|.+.+.+ +.+.|++++.
T Consensus 89 ~~~~~~p~--i~----------------------------------~~p~~~v~~G~~v~l~C~~~~~~-~~~~w~k~g~ 131 (184)
T 2gi7_A 89 TGVFAKPS--LS----------------------------------AQPGPAVSSGGDVTLQCQTRYGF-DQFALYKEGD 131 (184)
T ss_dssp ESSSCCCE--EE----------------------------------EECCCSSCCTTCEEEEEECSSCC-CEEEEEECCC
T ss_pred cCcCCCCE--EE----------------------------------eCCCceecCCCcEEEEEEcCCCC-cEEEEEECCC
Confidence 55332221 00 00122456899999999987654 5899999998
Q ss_pred ecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCc
Q psy7039 395 EVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGS 437 (516)
Q Consensus 395 ~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~ 437 (516)
.+....... .....|.|.++.. .|.|.|+|.|.|..+.
T Consensus 132 ~~~~~~~~~----~~~~~L~i~~v~~-~D~G~Y~C~a~n~~~~ 169 (184)
T 2gi7_A 132 PAPYKNPER----WYRASFPIITVTA-AHSGTYRCYSFSSRDP 169 (184)
T ss_dssp CTTSCCCCE----EEEESSSEEEETT-CCSEEEEEEEECTTST
T ss_pred cCcceecCC----CceEEEEEccCCc-cCCeEEEEEEEeCCCC
Confidence 765422211 2235688999999 9999999999998653
|
| >1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C* | Back alignment and structure |
|---|
Probab=99.55 E-value=2.2e-14 Score=125.94 Aligned_cols=154 Identities=13% Similarity=0.073 Sum_probs=113.3
Q ss_pred cccCCceEEEEEEEEccCCCCCce-ecccccccceEEEEEecceeeEEEccCCCCCceEEEEEEEecCCCcceeEEEEEe
Q psy7039 237 NVHEGKAYEYRVSAVNAAGTEKPK-ISLDALIGKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVV 315 (516)
Q Consensus 237 ~l~~g~~~~~~~~~~~~~g~p~p~-i~W~~~~~~~~~~~~~~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~~~~l~v~ 315 (516)
.+.+|+.+.|.|.+ .|.+.+. +.|.+... . .......|.|.+++.+|+|.|+|.+.|..+ +..+.+.|.
T Consensus 18 ~v~~G~~v~L~C~~---~~~p~~~~~~W~~~~~-~----~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~--s~~~~l~V~ 87 (175)
T 1fnl_A 18 SVLEKDSVTLKCQG---AYSPEDNSTQWFHNES-L----ISSQASSYFIDAATVNDSGEYRCQTNLSTL--SDPVQLEVH 87 (175)
T ss_dssp EEETTCCEEEEEEC---CCBTTBCCCEEEETTE-E----EESSCSEEEESSCCGGGCEEEEEECSSSCC--CCCEEEEEE
T ss_pred eeeCCCcEEEEeeC---CCCCCCcceEEEECCE-E----ccCCceEEEEeCCCcccCEEEEEEeeCCcc--cccEEEEEe
Confidence 57789999999988 7777666 67866321 1 124677999999999999999999998544 445566665
Q ss_pred cCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeeecCC-ceEEEECCe
Q psy7039 316 SKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKP-TPIWTVNGD 394 (516)
Q Consensus 316 ~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~-~i~W~~~~~ 394 (516)
..+.. + ......+..|+.+.|.|.+.+.+++ .+.|++++.
T Consensus 88 ~~~~~------~---------------------------------~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~k~g~ 128 (175)
T 1fnl_A 88 IGWLL------L---------------------------------QAPRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGK 128 (175)
T ss_dssp CSSEE------E---------------------------------ECSCSEEETTCCEEEEEEECTTCCCEEEEEEETTE
T ss_pred CCCce------e---------------------------------eCCCceecCCCCEEEEEEcCCCCCceEEEEEECCe
Confidence 32110 0 1122457899999999999987765 999999997
Q ss_pred ecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCc-eeEEEEEEEec
Q psy7039 395 EVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGS-DSASCKVYVVD 448 (516)
Q Consensus 395 ~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~-~s~s~~l~v~~ 448 (516)
.+.. ......|.|.++.. .|.|.|+|.|.|..|. .+..+.|.|.+
T Consensus 129 ~~~~--------~~~~~~L~i~~v~~-~d~G~Y~C~a~n~~~~~~s~~~~l~V~~ 174 (175)
T 1fnl_A 129 DRKY--------FHHNSDFHIPKATL-KDSGSYFCRGLVGSKNVSSETVNITITQ 174 (175)
T ss_dssp EEEE--------EEECCCEEESSCCG-GGCEEEEEEEEETTEEEECCCEEEEEEC
T ss_pred EccC--------CCCCCEEEEcccCh-hhCeEEEEEEEcCCCCccCccEEEEEeC
Confidence 6521 11224699999999 9999999999997664 56667787764
|
| >4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.55 E-value=4.4e-14 Score=128.92 Aligned_cols=174 Identities=16% Similarity=0.150 Sum_probs=115.0
Q ss_pred cccCCceEEEEEEEEccCCCC-----CceecccccccceEE----------------EEE-----ecceeeEEEccCCCC
Q psy7039 237 NVHEGKAYEYRVSAVNAAGTE-----KPKISLDALIGKRIK----------------EFV-----TSTTASLNIKNSVRK 290 (516)
Q Consensus 237 ~l~~g~~~~~~~~~~~~~g~p-----~p~i~W~~~~~~~~~----------------~~~-----~~~~~~l~i~~l~~~ 290 (516)
.+.+|+.+.|.|.+ .+.+ .+.+.|.+....... ... ......|.|.+++.+
T Consensus 6 ~~~~G~~v~L~C~~---~~~~~~~~~~~~v~W~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v~~~ 82 (222)
T 4i0k_A 6 VALVDTDATLRCSF---SPEPGFSLAQLNLIWQLTDTKQLVHSFTEGRDQGSAYSNRTALFPDLLVQGNASLRLQRVRVT 82 (222)
T ss_dssp CCCTTSCEEECCBC---CCCTTCCTTTEEEEEEETTTCCEEEEEETTEEEEESSCSCEECCTTTGGGTBCCEEECSCCGG
T ss_pred EEECCCCeEEEEEe---cCCCCCCCCceEEEEEECCCccEEEEEcCCcccccceeCcEEEecccccCCeEEEEECCcccc
Confidence 45789999999987 4443 378899653322111 111 112678999999999
Q ss_pred CceEEEEEEEecCCCcceeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcC
Q psy7039 291 DSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAG 370 (516)
Q Consensus 291 d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g 370 (516)
|+|.|+|.+.|. +..+..+.|.|...+..|.. .......+..|
T Consensus 83 D~G~Y~C~~~~~-~~~~~~~~l~V~~~~~~p~i------------------------------------~~~~~~~v~~G 125 (222)
T 4i0k_A 83 DEGSYTCFVSIQ-DFDSAAVSLQVAAPYSKPSM------------------------------------TLEPNKDLRPG 125 (222)
T ss_dssp GCSCEEEEEEEC-CCCCCCCCCCCCBCCCCCEE------------------------------------ECCC-----CC
T ss_pred cCEEEEEEEEeC-CCceEEEEEEEEcCCCCCcE------------------------------------EeCCCceecCC
Confidence 999999999986 34444555655544333210 01112356789
Q ss_pred CeEEEEEEE-eeecCCceEEEE-CCeecCCCCceEEEEc--CCeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEEEE
Q psy7039 371 EEFTITVPF-SGRPKPTPIWTV-NGDEVSPDGRIKFETS--ENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYV 446 (516)
Q Consensus 371 ~~~~l~C~~-~g~p~~~i~W~~-~~~~l~~~~~~~~~~~--~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~v 446 (516)
+.+.|.|.+ .+.|.+.+.|++ ++..+........... +....|.|.++.. .|.|.|+|.|.|..|....++.|.|
T Consensus 126 ~~~~l~C~~~~g~P~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~-~d~G~Y~C~a~n~~g~~~~~~~l~V 204 (222)
T 4i0k_A 126 NMVTITCSSYQGYPEAEVFWKDGQGVPLTGNVTTSQMANERGLFDVHSVLRVVL-GANGTYSCLVRNPVLQQDAHGSVTI 204 (222)
T ss_dssp SEEEEEEEEEEEBSCCEEEEECTTSCBCCSEEEEEEEECTTSCEEEEEEEEEEC-CTTCEEEEEEEETTTTEEEEEEEEC
T ss_pred ceEEEEEecccccCCCeEEEEcCCCccCCCCcceeEEcCCCCeEEEEEEEEEEe-CCCCEEEEEEECCCCCCceEEEEEE
Confidence 999999999 888999999998 4444433222222222 2234578999999 9999999999999999999999999
Q ss_pred ecCCC
Q psy7039 447 VDKPS 451 (516)
Q Consensus 447 ~~~p~ 451 (516)
..+|-
T Consensus 205 ~~~p~ 209 (222)
T 4i0k_A 205 TGQPL 209 (222)
T ss_dssp CC---
T ss_pred eCCcc
Confidence 87653
|
| >3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L* | Back alignment and structure |
|---|
Probab=99.54 E-value=1.7e-13 Score=124.13 Aligned_cols=168 Identities=11% Similarity=0.117 Sum_probs=115.1
Q ss_pred ccccCCceEEEEEEEEccCCCCCceeccccc-------------------ccceEEEEEecceeeEEEccCCCCCceEEE
Q psy7039 236 NNVHEGKAYEYRVSAVNAAGTEKPKISLDAL-------------------IGKRIKEFVTSTTASLNIKNSVRKDSGIYK 296 (516)
Q Consensus 236 ~~l~~g~~~~~~~~~~~~~g~p~p~i~W~~~-------------------~~~~~~~~~~~~~~~l~i~~l~~~d~g~y~ 296 (516)
..+.+|+.+.|.|.+ .|.+.+.+.|.+. ...++..........|.|.+++.+|+|.|+
T Consensus 10 ~~v~~G~~v~L~C~~---~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~ 86 (213)
T 3mj8_L 10 VSVALGQKATITCSG---DKLSDVYVHWYQQKAGQAPVLVIYEDNRRPSGIPDHFSGSNSGNMATLTISKAQAGDEADYY 86 (213)
T ss_dssp EEEETTSCEEEEEEC---SSTTTSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred EEEeCCCCEEEEEEc---CCCCCceEEEEEECCCCCcEEEEEECCccCCCccCcEEEEecCCEEEEEECCCChhhCEEEE
Confidence 346789999999998 6889999999651 112344434566788999999999999999
Q ss_pred EEEEecCC---CcceeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeE
Q psy7039 297 IEAKNDYG---IDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEF 373 (516)
Q Consensus 297 c~a~n~~g---~~~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~ 373 (516)
|.|.|..+ .......|.|...+..+.. +.+ ......+..|+.+
T Consensus 87 C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~-i~~---------------------------------~~~~~~~~~g~~v 132 (213)
T 3mj8_L 87 CQSWDGTNSAWVFGSGTKVTVLGQPNAAPS-VTL---------------------------------FPPSSEELKTNQA 132 (213)
T ss_dssp EEEEETTTTEEEEBCCEEEEEECSCCBCCE-EEE---------------------------------ECCCHHHHTTTEE
T ss_pred EEeccCCcceeEEcCceEEEEeCCCCCCCe-EEc---------------------------------cCCCcccccCCcE
Confidence 99999887 3455667777754321110 000 0011122379999
Q ss_pred EEEEEEeeecC--CceEEEECCeecCCCCc--eEEEEcC---CeEEEEEcCceecCCceEEEEEEEcCCCceeEE
Q psy7039 374 TITVPFSGRPK--PTPIWTVNGDEVSPDGR--IKFETSE---NQTIYRNKSAKRATDSGSYTIQLVNTVGSDSAS 441 (516)
Q Consensus 374 ~l~C~~~g~p~--~~i~W~~~~~~l~~~~~--~~~~~~~---~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s 441 (516)
.|.|.+.|.++ +.+.|++++..+..+.. ......+ ....|.|..+.. +|.|.|+|.|.|..+....+
T Consensus 133 ~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~-~d~G~Y~C~a~n~~~~~~~~ 206 (213)
T 3mj8_L 133 TLVCMINGFYPADVAVTWEADGTPITQGVKTTQPSKSDSKYMATSYLTMTADAW-KSRNTFICKVTHGGNTVEKS 206 (213)
T ss_dssp EEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEEETTEEEEEEEEEEESHHH-HSCSCEEEEEEETTEEEEEE
T ss_pred EEEEEeeceeCCCeEEEEEcCCcccCCCcccCCcCccCCcEEEEEEEEEeHHHc-CCCCEEEEEEEECCccEEee
Confidence 99999998643 38999999988754210 0000111 124589999999 99999999999998655443
|
| >3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=7.8e-14 Score=131.23 Aligned_cols=178 Identities=14% Similarity=0.125 Sum_probs=120.4
Q ss_pred CcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeecc---------------
Q psy7039 119 STLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQI--------------- 183 (516)
Q Consensus 119 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~--------------- 183 (516)
..+..+.+.+|+.+.|.|.+.. + .+.+.+.+.|++++.....
T Consensus 10 ~~~~~~~v~~G~~v~L~C~~~~-------~----------------~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~ 66 (268)
T 3mj6_A 10 VSSPQLRVHVGESVLMGCVVQR-------T----------------EEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPT 66 (268)
T ss_dssp --CCEEEEETTCCEEECCBCCC-------S----------------SCCCEEEEEEEEESSSTTCCEEEEEEETTEEEEC
T ss_pred cCCCceEEecCCcEEEEEEeec-------C----------------CCCceEEEEEEEeCCCCCceEEEEEEcCCCcccC
Confidence 3455688999999999999860 0 0356678888885432211
Q ss_pred ---CCceEEee--cCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEE--EEeec--eeeeeccccCCceEEEEEEEEccC
Q psy7039 184 ---GGRADVQT--TKSETVLDIPFCSRSDTGHYSLTLENNLGTATAS--AHVTG--TEFTDNNVHEGKAYEYRVSAVNAA 254 (516)
Q Consensus 184 ---~~~~~~~~--~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~--~~~~~--~~~~~~~l~~g~~~~~~~~~~~~~ 254 (516)
..|+.+.. .....+|.|.+++.+|+|.|+|.+.+..+..... ..+.+ .......+.+|..+.|.|.+....
T Consensus 67 ~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~~p~~~~v~~G~~v~L~C~~~~~~ 146 (268)
T 3mj6_A 67 GRFQNRSHLVGDTFHNDGSLLLQDVQKADEGIYTCEIRLKNESMVMKKPVELWVLPEEPRDLRVRVGDTTQMRCSIQSTE 146 (268)
T ss_dssp GGGTTTEEECSCTTTTBCCEEECSCCGGGCEEEEEEEEETTCCCEEEEEEEEEEECCCCSEEEEETTCCEEECCBCEESS
T ss_pred ccccCceEEeecCCCCEEEEEECCCCHhHCEEEEEEEEecCCcceEEEEEEEEEeccCCCccccccCCcEEEEEEecCCC
Confidence 13333321 2334789999999999999999999875544322 22222 222345577899999999885557
Q ss_pred CCCCceecccccccc----eEEE---------------------EE----ecceeeEEEccCCCCCceEEEEEEEecCCC
Q psy7039 255 GTEKPKISLDALIGK----RIKE---------------------FV----TSTTASLNIKNSVRKDSGIYKIEAKNDYGI 305 (516)
Q Consensus 255 g~p~p~i~W~~~~~~----~~~~---------------------~~----~~~~~~l~i~~l~~~d~g~y~c~a~n~~g~ 305 (516)
+.|.|.+.|.+..+. ...+ .. ......|.|.++..+|+|.|+|.|.|..|.
T Consensus 147 ~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~ 226 (268)
T 3mj6_A 147 EKRVTKVNWMFSSGSHTEEETVLSYDSNMRSGKFQSLGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLE 226 (268)
T ss_dssp SSCCCEEEEEEECTTCSSCEEEEEEETTSSSCEEECSSTTTTTEEECSCGGGTBCCEEECSCCGGGCEEEEEEEEETTEE
T ss_pred CCCccceEEEecCCCCCcceeEEEecCCCCccccccccccccceEeeccCCCCeEEEEECcCChhhCeEEEEEEEcCCce
Confidence 789999999763221 1111 00 134678999999999999999999999888
Q ss_pred cceeEEEEEecCCC
Q psy7039 306 DMADIEVVVVSKPG 319 (516)
Q Consensus 306 ~~~~~~l~v~~~p~ 319 (516)
....+.|.|...++
T Consensus 227 ~~~~~~l~V~~~~p 240 (268)
T 3mj6_A 227 SRKTIVLHVVQDEF 240 (268)
T ss_dssp EEEEEEEEEECC--
T ss_pred EEEEEEEEEEcCCC
Confidence 88888888865443
|
| >1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1 | Back alignment and structure |
|---|
Probab=99.54 E-value=1.8e-13 Score=128.06 Aligned_cols=170 Identities=14% Similarity=0.110 Sum_probs=113.2
Q ss_pred ccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcC--ceeeEEeeC--Ceeec--------------
Q psy7039 121 LNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEP--FLNHGWSIN--GQVCQ-------------- 182 (516)
Q Consensus 121 ~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p--~~~i~W~~~--~~~~~-------------- 182 (516)
+..+.+.+|+.+.|.|.+. +.| .+.+.|+++ +..+.
T Consensus 7 p~~~~v~~G~~v~L~C~~~--------------------------g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~ 60 (257)
T 1f3r_B 7 SGPGLVRPSETLSLTCTVS--------------------------GFSLTSFSVSWVRHPSGKGPEWMGRMWYDGYTAYN 60 (257)
T ss_dssp ECCSEECTTSEEEEEEEEE--------------------------SSCTTTSCCEEEEEETTSCCEEEEEECSSSCEEEC
T ss_pred CCCccccCCceEEEEEEEe--------------------------cccCCCccEEEEEeCCCCCcEEEEEEecCCceeeC
Confidence 3446789999999999998 654 577888774 21110
Q ss_pred --cCCceEEeec--CCeeEEEeccCCCCCCeeEEEEEEcCCC-------ce----EEEEEeece--------------e-
Q psy7039 183 --IGGRADVQTT--KSETVLDIPFCSRSDTGHYSLTLENNLG-------TA----TASAHVTGT--------------E- 232 (516)
Q Consensus 183 --~~~~~~~~~~--~~~~~l~i~~~~~~d~g~Y~c~~~~~~g-------~~----~~~~~~~~~--------------~- 232 (516)
...|+.+... ....+|.|.+++.+|+|.|.|.+.|..| .. ...+.+... .
T Consensus 61 ~~~~~R~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~ 140 (257)
T 1f3r_B 61 SALKSRLSISRDTSKNQVFLKMNSLQTDDTGTYYCTRDLYGGYPLGFWYFDFWGPGTMVTVSSGGGGSGGGGSGGGGSDI 140 (257)
T ss_dssp SSSSTTEEEEEETTTTEEEEEEESCCTTCCEEEEEEEESSSSCCSSCCCEEEECCCEEEEECSSCCSSCCSSSCCCCCEE
T ss_pred cccCCcEEEEEECCCCEEEEEECCCCcccCEEEEEEEcccccCccccccccccCCceEEEEEeCCccccccccCCCccce
Confidence 1346665542 4567999999999999999999998753 11 112222211 0
Q ss_pred -e----eeccccCCceEEEEEEEEccCCCCCceecccccc-c------------------ceEEEEEecceeeEEEccCC
Q psy7039 233 -F----TDNNVHEGKAYEYRVSAVNAAGTEKPKISLDALI-G------------------KRIKEFVTSTTASLNIKNSV 288 (516)
Q Consensus 233 -~----~~~~l~~g~~~~~~~~~~~~~g~p~p~i~W~~~~-~------------------~~~~~~~~~~~~~l~i~~l~ 288 (516)
+ ....+.+|+.+.|.|.+ .|.+.+.+.|.+.. + .++..........|.|.++.
T Consensus 141 ~~~~~p~~~~v~~G~~v~L~C~~---~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~ 217 (257)
T 1f3r_B 141 KLTQSPSLLSASVGDRVTLSCKG---SQNINNYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGSGTDYTLTISSLQ 217 (257)
T ss_dssp CSCEETSEECCCTTCCEEEEEEC---SSCCBTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEEBTEEEEEECSCC
T ss_pred EEEccCCEEEEcCCCCEEEEEEE---CCcCCCcEEEEEECCCCCcEEEEEEccCCCCCcCCCEEEecCCCEEEEEECCCC
Confidence 1 12346789999999998 77788899997621 1 12222223456689999999
Q ss_pred CCCceEEEEEEEecCCCcceeEEEEEecCCC
Q psy7039 289 RKDSGIYKIEAKNDYGIDMADIEVVVVSKPG 319 (516)
Q Consensus 289 ~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~ 319 (516)
.+|+|.|+|.|.|..........|.|...+.
T Consensus 218 ~~D~G~Y~C~a~n~~~~~g~gt~l~V~~~~~ 248 (257)
T 1f3r_B 218 PEDVATYFCYQYNNGYTFGAGTKLELKAAEQ 248 (257)
T ss_dssp GGGCSEEEEEEESSSEEECCCCEECCSSSCC
T ss_pred hhhCEEEEEEEeCCCCeECCCEEEEEeCCCc
Confidence 9999999999999651112234555554443
|
| >1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1 | Back alignment and structure |
|---|
Probab=99.54 E-value=1.3e-13 Score=129.08 Aligned_cols=188 Identities=15% Similarity=0.042 Sum_probs=121.2
Q ss_pred ccccCCceEEEEEEEEccCCCC--Cceecccccc-----------------------cceEEEEEe--cceeeEEEccCC
Q psy7039 236 NNVHEGKAYEYRVSAVNAAGTE--KPKISLDALI-----------------------GKRIKEFVT--STTASLNIKNSV 288 (516)
Q Consensus 236 ~~l~~g~~~~~~~~~~~~~g~p--~p~i~W~~~~-----------------------~~~~~~~~~--~~~~~l~i~~l~ 288 (516)
..+.+|+.+.|.|.+ .|.+ .+.+.|.+.. ..++.+... .....|.|.+++
T Consensus 10 ~~v~~G~~v~L~C~~---~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~ 86 (257)
T 1f3r_B 10 GLVRPSETLSLTCTV---SGFSLTSFSVSWVRHPSGKGPEWMGRMWYDGYTAYNSALKSRLSISRDTSKNQVFLKMNSLQ 86 (257)
T ss_dssp SEECTTSEEEEEEEE---ESSCTTTSCCEEEEEETTSCCEEEEEECSSSCEEECSSSSTTEEEEEETTTTEEEEEEESCC
T ss_pred ccccCCceEEEEEEE---ecccCCCccEEEEEeCCCCCcEEEEEEecCCceeeCcccCCcEEEEEECCCCEEEEEECCCC
Confidence 457889999999998 5553 6889996521 112222221 345689999999
Q ss_pred CCCceEEEEEEEecCCC---------cceeEEEEEecCCCCC-CCCceeeeccCCeeEEEecCCCCCCCCceeecccccc
Q psy7039 289 RKDSGIYKIEAKNDYGI---------DMADIEVVVVSKPGPP-TGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITS 358 (516)
Q Consensus 289 ~~d~g~y~c~a~n~~g~---------~~~~~~l~v~~~p~~p-~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~ 358 (516)
.+|+|.|+|.|.|..|. ......|.|...+... ..++... +.++ ..
T Consensus 87 ~~DsG~Y~C~a~n~~g~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~----------~~~~--------------~~ 142 (257)
T 1f3r_B 87 TDDTGTYYCTRDLYGGYPLGFWYFDFWGPGTMVTVSSGGGGSGGGGSGGG----------GSDI--------------KL 142 (257)
T ss_dssp TTCCEEEEEEEESSSSCCSSCCCEEEECCCEEEEECSSCCSSCCSSSCCC----------CCEE--------------CS
T ss_pred cccCEEEEEEEcccccCccccccccccCCceEEEEEeCCccccccccCCC----------ccce--------------EE
Confidence 99999999999998641 1123466666543210 0000000 0000 00
Q ss_pred ccccccEEEEcCCeEEEEEEEeeecCCceEEEE--CCeecC------------CCCceEEEEcCCeEEEEEcCceecCCc
Q psy7039 359 DLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTV--NGDEVS------------PDGRIKFETSENQTIYRNKSAKRATDS 424 (516)
Q Consensus 359 ~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~--~~~~l~------------~~~~~~~~~~~~~~~l~i~~~~~~~~~ 424 (516)
...+....+.+|+.+.|.|.+.+.+.+.+.|++ ++..+. ...++..........|+|.++.. .|+
T Consensus 143 ~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~-~D~ 221 (257)
T 1f3r_B 143 TQSPSLLSASVGDRVTLSCKGSQNINNYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGSGTDYTLTISSLQP-EDV 221 (257)
T ss_dssp CEETSEECCCTTCCEEEEEECSSCCBTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEEBTEEEEEECSCCG-GGC
T ss_pred EccCCEEEEcCCCCEEEEEEECCcCCCcEEEEEECCCCCcEEEEEEccCCCCCcCCCEEEecCCCEEEEEECCCCh-hhC
Confidence 012334567899999999999999888999999 454321 13566665556667899999999 999
Q ss_pred eEEEEEEEcCCCceeEEEEEEEecCCC
Q psy7039 425 GSYTIQLVNTVGSDSASCKVYVVDKPS 451 (516)
Q Consensus 425 g~y~c~a~n~~G~~s~s~~l~v~~~p~ 451 (516)
|.|.|.|.|....-.....|.|...+.
T Consensus 222 G~Y~C~a~n~~~~~g~gt~l~V~~~~~ 248 (257)
T 1f3r_B 222 ATYFCYQYNNGYTFGAGTKLELKAAEQ 248 (257)
T ss_dssp SEEEEEEESSSEEECCCCEECCSSSCC
T ss_pred EEEEEEEeCCCCeECCCEEEEEeCCCc
Confidence 999999999752122234666655443
|
| >1x5y_A Myosin binding protein C, fast-type; fast MYBP-C, fibronectin type III domain containing protein, cytoskeleton, muscle contraction; NMR {Mus musculus} SCOP: b.1.2.1 | Back alignment and structure |
|---|
Probab=99.54 E-value=5.8e-14 Score=113.18 Aligned_cols=101 Identities=28% Similarity=0.434 Sum_probs=87.4
Q ss_pred cCCCCCCCCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCC-CeEEeEEeecCCcEEEeCCCcCCCeEEEE
Q psy7039 8 KNPFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTG-NWEKAVVVPAGETSCTVPGLIEGETYQFQ 86 (516)
Q Consensus 8 ~~~~~~p~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~-~~~~~~~~~~~~~~~~i~~l~~~~~y~~~ 86 (516)
..|.++|++|.+|++..++++++.|+|.+|..+++.+|.+|.|+++..+. .|..+.......++++|.+|.++..|.|+
T Consensus 3 ~~p~~~P~~P~~l~~~~~~~~sv~l~W~~p~~~~~~~i~~Y~v~~~~~~~~~w~~~~~~~~~~~~~~v~~L~p~t~Y~fr 82 (111)
T 1x5y_A 3 SGSSGPTSAPQHLTVEDVTDTTTTLKWRPPDRIGAGGIDGYLVEYCLEGSEEWVPANKEPVERCGFTVKDLPTGARILFR 82 (111)
T ss_dssp CSCCSCCCCCEEEEEEEECSSEEEEEEECCSCCCSSCCCEEEEEEEETTCCCCEESSSSCBSSSEEEEECCCTTCCEEEE
T ss_pred CCCCCCCcCCCCCEEEeccCCEEEEEECCCCcCCCCcccEEEEEEEECCCCceEEccccCCcccEEEECCCCCCCEEEEE
Confidence 45889999999999999999999999999987777789999999998665 78877655567889999999999999999
Q ss_pred EEEecCCCCCCCCCCCcceEec
Q psy7039 87 VRAVNAAGPGEASKPTAPIVAK 108 (516)
Q Consensus 87 ~~a~n~~g~~~~s~~~~~~~~~ 108 (516)
|+|.|..|.+.++.....+...
T Consensus 83 V~A~n~~G~s~~S~~~~~v~~~ 104 (111)
T 1x5y_A 83 VVGVNIAGRSEPATLLQPVTIR 104 (111)
T ss_dssp EEEEETTEECCCCCCSSCBCCC
T ss_pred EEEEcCCcCCCCccCCCCEEec
Confidence 9999999999888766555543
|
| >2d9q_B Granulocyte colony-stimulating factor receptor; cytokine, ligand-receptor complex, signaling protein-cytokin; HET: NAG; 2.80A {Homo sapiens} SCOP: b.1.1.3 b.1.2.1 b.1.2.1 | Back alignment and structure |
|---|
Probab=99.53 E-value=2.4e-13 Score=131.27 Aligned_cols=224 Identities=13% Similarity=0.081 Sum_probs=135.4
Q ss_pred eccccCCceEEEEEEEEccCCC-----CCceecccccc----cceEEEEEecc-eeeEEEccCCCCCceEEEEEEEecCC
Q psy7039 235 DNNVHEGKAYEYRVSAVNAAGT-----EKPKISLDALI----GKRIKEFVTST-TASLNIKNSVRKDSGIYKIEAKNDYG 304 (516)
Q Consensus 235 ~~~l~~g~~~~~~~~~~~~~g~-----p~p~i~W~~~~----~~~~~~~~~~~-~~~l~i~~l~~~d~g~y~c~a~n~~g 304 (516)
...+..|+.+.+.|.+ .|. +.+.+.|.... ..+......+. ...|+|.++...|+|.|+|.+.+..+
T Consensus 9 ~~~v~~G~~v~l~C~~---~~~~~~~~~~~~i~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~g~y~c~~~~~~~ 85 (313)
T 2d9q_B 9 APIVHLGDPITASCII---KQNCSHLDPEPQILWRLGAELQPGGRQQRLSDGTQESIITLPHLNHTQAFLSCSLNWGNSL 85 (313)
T ss_dssp CSEECTTCCEEEEECC---CTTSCSSCSCSCCEEESSSCBCTTCEECCCSSSCCCEEEEESCCCSSEEEEEEEEESSSSE
T ss_pred CcEEcCCCCEEEEEEE---CCCCCCCCcccceEEEeCCEECCccceEEEecCeEEEEEEEeccCCCccceEEeeecCCCc
Confidence 3456789999999998 554 57889995421 11111111122 26799999999999999998865444
Q ss_pred CcceeEEEEEecCCCCCCCCceeeec-cCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeeec
Q psy7039 305 IDMADIEVVVVSKPGPPTGPIDYTTV-TPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRP 383 (516)
Q Consensus 305 ~~~~~~~l~v~~~p~~p~~p~~~~~~-~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p 383 (516)
.....+.|.|..+|.+|.. +.+... ..+++.++|.++.+. +.++ .|. |.+...+..
T Consensus 86 ~~~~~~~l~v~~~P~~P~~-l~c~~~~~~~~~~~~W~~~~~~-~~~~-~Y~--------------------l~~~~~~~~ 142 (313)
T 2d9q_B 86 QILDQVELRAGYPPAIPHN-LSCLMNLTTSSLICQWEPGPET-HLPT-SFT--------------------LKSFKSRGN 142 (313)
T ss_dssp EEEEEEEEEECCCCCCCEE-EEEEEETTTTEEEEEEECCSCC-SSCC-EEE--------------------EEEEECCTT
T ss_pred eeEEEEEEccCCCCCCCcc-ceeeECCCCccEEEEecCCCCC-CCce-eEE--------------------EEEEecCCC
Confidence 4445567777666665543 555555 468999999988763 3222 231 121111000
Q ss_pred C--CceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeE-EEEEEEe--cCCCCCCCCcc
Q psy7039 384 K--PTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSA-SCKVYVV--DKPSPPQGPLD 458 (516)
Q Consensus 384 ~--~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~-s~~l~v~--~~p~~P~~~l~ 458 (516)
. ..-.|..-. . ........+...++.+ ...|.|+|.|.|..|.... ...+... .+|.+| .++.
T Consensus 143 ~~~~~~~~~~~~----~------~~~~~~~~~~~~~L~~-~~~Y~f~V~A~N~~G~~~s~~~~~~~~~~~~p~pP-~~~~ 210 (313)
T 2d9q_B 143 CQTQGDSILDCV----P------KDGQSHCSIPRKHLLL-YQNMGIWVQAENALGTSMSPQLCLDPMDVVKLEPP-MLRT 210 (313)
T ss_dssp SCSCCCCEEEEC----C------CTTCSEEEEEGGGCCS-SSCEEEEEEEEETTEEEECCCEEECGGGGEECCCC-EEEE
T ss_pred cccCCcccccCC----C------CCCCcEEEECcccccc-ceeEEEEEEEECCCCCccCccEEEehhheeccCcC-ceeE
Confidence 0 000111000 0 0011223444456888 8999999999999998532 2222222 357887 6777
Q ss_pred cccc------cCCeEEEEeeCCCCCCCCCcceEEEEEE-ecCCCce
Q psy7039 459 VSDI------TPESCSLSWKPPLDDGGSPITNYVVEKY-ESATGVS 497 (516)
Q Consensus 459 ~~~~------~~~~~~l~W~~p~~~~~~~i~~Y~v~~~-~~~~~~~ 497 (516)
+..+ ..+++.|+|++|. .++..+.+|.|+|+ ..+...+
T Consensus 211 ~~~~~~~~~~~~~~l~l~W~~p~-~~~~~~l~Y~v~y~~~~~~~~w 255 (313)
T 2d9q_B 211 MDPSPEAAPPQAGCLQLSWEPWQ-PGLHINQKCELRHKPQRGEASW 255 (313)
T ss_dssp CCC-------CCSCEEEEEECCG-GGTTSCEEEEEEEEESSSCCCC
T ss_pred EEEecccccCCCCeEEEEECCCC-CCCceeEEEEEEEccCCCCCCc
Confidence 7765 4689999999986 34444679999999 5544443
|
| >3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=6.5e-14 Score=131.77 Aligned_cols=172 Identities=16% Similarity=0.190 Sum_probs=118.5
Q ss_pred ccccCCceEEEEEEEEccCCCCCceeccccccc-----------------------ceEEE--EEecceeeEEEccCCCC
Q psy7039 236 NNVHEGKAYEYRVSAVNAAGTEKPKISLDALIG-----------------------KRIKE--FVTSTTASLNIKNSVRK 290 (516)
Q Consensus 236 ~~l~~g~~~~~~~~~~~~~g~p~p~i~W~~~~~-----------------------~~~~~--~~~~~~~~l~i~~l~~~ 290 (516)
..+.+|+.+.|.|.+....|.+.+.+.|.+... .+..+ ........|.|.+++.+
T Consensus 15 ~~v~~G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~ 94 (268)
T 3mj6_A 15 LRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQNRSHLVGDTFHNDGSLLLQDVQKA 94 (268)
T ss_dssp EEEETTCCEEECCBCCCSSCCCEEEEEEEEESSSTTCCEEEEEEETTEEEECGGGTTTEEECSCTTTTBCCEEECSCCGG
T ss_pred eEEecCCcEEEEEEeecCCCCceEEEEEEEeCCCCCceEEEEEEcCCCcccCccccCceEEeecCCCCEEEEEECCCCHh
Confidence 356789999999988544477888999976221 11111 00123378999999999
Q ss_pred CceEEEEEEEecCCCcceeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcC
Q psy7039 291 DSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAG 370 (516)
Q Consensus 291 d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g 370 (516)
|+|.|+|.+.|..+.......+.+...+.. +....+..|
T Consensus 95 D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~~-----------------------------------------p~~~~v~~G 133 (268)
T 3mj6_A 95 DEGIYTCEIRLKNESMVMKKPVELWVLPEE-----------------------------------------PRDLRVRVG 133 (268)
T ss_dssp GCEEEEEEEEETTCCCEEEEEEEEEEECCC-----------------------------------------CSEEEEETT
T ss_pred HCEEEEEEEEecCCcceEEEEEEEEEeccC-----------------------------------------CCccccccC
Confidence 999999999997665533333333322222 234678899
Q ss_pred CeEEEEEEE---eeecCCceEEEECCeec-CCC---------------------CceEEEE--cCCeEEEEEcCceecCC
Q psy7039 371 EEFTITVPF---SGRPKPTPIWTVNGDEV-SPD---------------------GRIKFET--SENQTIYRNKSAKRATD 423 (516)
Q Consensus 371 ~~~~l~C~~---~g~p~~~i~W~~~~~~l-~~~---------------------~~~~~~~--~~~~~~l~i~~~~~~~~ 423 (516)
+.+.|.|.+ .+.|.+.+.|++++... ... .+..+.. ......|.|.++.. .|
T Consensus 134 ~~v~L~C~~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~-~D 212 (268)
T 3mj6_A 134 DTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRSGKFQSLGRFRNRVDLTGDISRNDGSIKLQTVKE-SD 212 (268)
T ss_dssp CCEEECCBCEESSSSCCCEEEEEEECTTCSSCEEEEEEETTSSSCEEECSSTTTTTEEECSCGGGTBCCEEECSCCG-GG
T ss_pred CcEEEEEEecCCCCCCccceEEEecCCCCCcceeEEEecCCCCccccccccccccceEeeccCCCCeEEEEECcCCh-hh
Confidence 999999999 67788999999943211 100 0111100 12345799999999 99
Q ss_pred ceEEEEEEEcCCCceeEEEEEEEecC
Q psy7039 424 SGSYTIQLVNTVGSDSASCKVYVVDK 449 (516)
Q Consensus 424 ~g~y~c~a~n~~G~~s~s~~l~v~~~ 449 (516)
.|.|+|.|.|..|....++.|.|...
T Consensus 213 ~G~Y~C~a~n~~g~~~~~~~l~V~~~ 238 (268)
T 3mj6_A 213 QGIYTCSIYVGKLESRKTIVLHVVQD 238 (268)
T ss_dssp CEEEEEEEEETTEEEEEEEEEEEECC
T ss_pred CeEEEEEEEcCCceEEEEEEEEEEcC
Confidence 99999999999998888888888643
|
| >3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus musculus} PDB: 2qhr_L 3ffd_B 4dcq_A | Back alignment and structure |
|---|
Probab=99.52 E-value=3.4e-13 Score=122.64 Aligned_cols=130 Identities=16% Similarity=0.208 Sum_probs=83.5
Q ss_pred ecceeeEEEccCCCCCceEEEEEEEecCC-----CcceeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCce
Q psy7039 276 TSTTASLNIKNSVRKDSGIYKIEAKNDYG-----IDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPI 350 (516)
Q Consensus 276 ~~~~~~l~i~~l~~~d~g~y~c~a~n~~g-----~~~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i 350 (516)
......|.|.+++.+|+|.|+|.|.|..| .......|.|...+..+.. +.+.
T Consensus 71 ~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~-~~~~---------------------- 127 (218)
T 3s96_B 71 SGADRYLSISNIQPEDEAIYICGVGDTIKEQFVYVFGGGTKVTVLGQPKSTPT-LTVF---------------------- 127 (218)
T ss_dssp ETTEEEEEESSCCGGGCEEEEEEEEEEETTEEEEEECCCEEEEEESCCCBCCE-EEEE----------------------
T ss_pred CCceEEEEEccCCcccCEEEEEEEecCCCCceeEEEcCcEEEEEecCCCCCce-EEee----------------------
Confidence 34567899999999999999999999876 2334567777654322110 0000
Q ss_pred eeccccccccccccEEEEcCCeEEEEEEEee-ecCC-ceEEEECCeecCCCCce--EEEEcCC---eEEEEEcCceecCC
Q psy7039 351 TGAPKITSDLSIRDMTVLAGEEFTITVPFSG-RPKP-TPIWTVNGDEVSPDGRI--KFETSEN---QTIYRNKSAKRATD 423 (516)
Q Consensus 351 ~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g-~p~~-~i~W~~~~~~l~~~~~~--~~~~~~~---~~~l~i~~~~~~~~ 423 (516)
........|+.+.|.|.+.+ .|.+ .+.|++++..+..+... .....+. .+.|.|..... +|
T Consensus 128 -----------~~~~~~~~~~~v~L~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~s~l~i~~~~~-~d 195 (218)
T 3s96_B 128 -----------PPSSEELKENKATLVCLISNFSPSGVTVAWKANGTPITQGVDTSNPTKEGNKFMASSFLHLTSDQW-RS 195 (218)
T ss_dssp -----------CCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEEC--------------CEEEEEEEEEEHHHH-HT
T ss_pred -----------CCCcccccCCcEEEEEEECcccCCCeEEEEEECCEECcCceecCcccccCCcEEEEEEEEEeHHHc-cC
Confidence 01112345688999999998 4666 89999999887542111 0001111 13478888887 88
Q ss_pred ceEEEEEEEcCCCceeE
Q psy7039 424 SGSYTIQLVNTVGSDSA 440 (516)
Q Consensus 424 ~g~y~c~a~n~~G~~s~ 440 (516)
.|.|+|.|.|..|....
T Consensus 196 ~g~Y~C~a~n~~~~~~~ 212 (218)
T 3s96_B 196 HNSFTCQVTHEGDTVEK 212 (218)
T ss_dssp CSCEEEEEEETTEEEEE
T ss_pred CCeEEEEEEeCCCcccc
Confidence 99999999999875443
|
| >3knb_B Obscurin-like protein 1; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2wp3_O* 2wwm_C 2wwk_O | Back alignment and structure |
|---|
Probab=99.52 E-value=9.8e-14 Score=110.82 Aligned_cols=89 Identities=25% Similarity=0.433 Sum_probs=80.6
Q ss_pred ccccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeE
Q psy7039 361 SIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSA 440 (516)
Q Consensus 361 ~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~ 440 (516)
.+.++.+.+|+.+.|.|.+.|.|.|.|.|++++..+..+.++.+...+....|.|.++.. .|+|.|+|.|.|..|..+.
T Consensus 19 ~p~~~~v~~G~~~~l~C~~~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~-~D~G~Y~C~a~N~~G~~~~ 97 (107)
T 3knb_B 19 FPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGLLLTAALP-TDAGVYVCRARNAAGEAYA 97 (107)
T ss_dssp CCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEECCEETTEEEEEESSCCG-GGCEEEEEEEEETTEEEEE
T ss_pred CCCcEEEeCCCcEEEEEEEEEecCCEEEEEECcccccceeeEEEeecCceEEEEEecCCh-hhCEEEEEEEEECCCEEEE
Confidence 356788999999999999999999999999999999888888888778888999999999 9999999999999999999
Q ss_pred EEEEEEecCC
Q psy7039 441 SCKVYVVDKP 450 (516)
Q Consensus 441 s~~l~v~~~p 450 (516)
++.|.|..+|
T Consensus 98 ~~~l~V~~pP 107 (107)
T 3knb_B 98 AAAVTVLEPP 107 (107)
T ss_dssp EEEEEEEC--
T ss_pred EEEEEEEcCC
Confidence 9999998754
|
| >2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A | Back alignment and structure |
|---|
Probab=99.52 E-value=4.5e-14 Score=129.62 Aligned_cols=160 Identities=14% Similarity=0.147 Sum_probs=112.3
Q ss_pred ccccCCceEEEEEEEEccCCCCC-ceecccccccc----------------eEEEEE---------ecceeeEEEccCCC
Q psy7039 236 NNVHEGKAYEYRVSAVNAAGTEK-PKISLDALIGK----------------RIKEFV---------TSTTASLNIKNSVR 289 (516)
Q Consensus 236 ~~l~~g~~~~~~~~~~~~~g~p~-p~i~W~~~~~~----------------~~~~~~---------~~~~~~l~i~~l~~ 289 (516)
..+..|+.+.|.|.+ .+.+. +.+.|.+.... ...+.. ....+.|.|.+++.
T Consensus 10 ~~v~~G~~v~L~C~~---~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~L~i~~v~~ 86 (231)
T 2pet_A 10 VEVMRGKSVILDCTP---TGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRSPPYQLDSQGRLVLAEAQV 86 (231)
T ss_dssp EEEETTCCEEECCCC---BSCCSEEEEEEEEECTTCCCCEEEEEEEETTEEEEEECCCSCCSSCCEECTTCCEEESSCCG
T ss_pred EEEEcCCCEEEeccc---CCCCCceEEEEEEeCCCceeEEEEeccccCCccccccccccccccccccCCCceEEEcccCc
Confidence 456789999999987 67774 89999752211 111110 23335599999999
Q ss_pred CCceEEEEEEEecC-CCcceeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEE
Q psy7039 290 KDSGIYKIEAKNDY-GIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVL 368 (516)
Q Consensus 290 ~d~g~y~c~a~n~~-g~~~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~ 368 (516)
+|+|.|+|.+.|.. +.....+.|.|...|..|.. . .......+.
T Consensus 87 ~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~~----~-------------------------------~~~~~~~~~ 131 (231)
T 2pet_A 87 GDERDYVCVVRAGAAGTAEATARLNVFAKPEATEV----S-------------------------------PNKGTLSVM 131 (231)
T ss_dssp GGCEEEEEEEECGGGCEEEEEEEEEEEBCCCCCEE----E-------------------------------ECCSSCCTT
T ss_pred ccCceEEEEEEecCCCceEEEEEEEEEecCCCcEE----e-------------------------------cCCcceeec
Confidence 99999999999987 77777888888877655311 0 011223345
Q ss_pred cCCeE-EEEEEE-eeecCCceEEEECCeecCCCC----ceEEEEc----CC-----eEEEEEcCceecCCceEEEEEEEc
Q psy7039 369 AGEEF-TITVPF-SGRPKPTPIWTVNGDEVSPDG----RIKFETS----EN-----QTIYRNKSAKRATDSGSYTIQLVN 433 (516)
Q Consensus 369 ~g~~~-~l~C~~-~g~p~~~i~W~~~~~~l~~~~----~~~~~~~----~~-----~~~l~i~~~~~~~~~g~y~c~a~n 433 (516)
.|+.+ .|.|.+ .+.|.+.+.|++++..+.... ++.+... .. ...|.|..... +|.|.|+|.|.|
T Consensus 132 ~g~~~~~l~C~~~~~~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~L~i~~~~~-dd~g~Y~C~a~n 210 (231)
T 2pet_A 132 EDSAQEIATCNSRNGNPAPKITWYRNGQRLEVPVEMNPEGYMTSRTVREASGLLSLTSTLYLRLRKD-DRDASFHCAAHY 210 (231)
T ss_dssp CCSEEEEEEEEEEEEBSCCEEEEEETTEECCCCSSCCSSEEEEEEEEECTTSCEEEEEEEEEECCGG-GGGCEEEEEEEE
T ss_pred CCCceEEEEEEeECcccCCEEEEEECCccCccccccccceeecceeEecCCCeEEEEEEEEEecchh-hCCceEEEEEEc
Confidence 78877 999999 899999999999998876544 4443321 11 15688875555 679999999999
Q ss_pred C
Q psy7039 434 T 434 (516)
Q Consensus 434 ~ 434 (516)
.
T Consensus 211 ~ 211 (231)
T 2pet_A 211 S 211 (231)
T ss_dssp E
T ss_pred C
Confidence 4
|
| >3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=1.4e-13 Score=124.09 Aligned_cols=164 Identities=15% Similarity=0.174 Sum_probs=111.4
Q ss_pred ceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeecc-------------------
Q psy7039 123 DVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQI------------------- 183 (516)
Q Consensus 123 ~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~------------------- 183 (516)
.+.+.+|+.+.|.|... +.+.+.+.|++++.....
T Consensus 8 ~~~v~~G~~v~L~C~~~--------------------------~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 61 (208)
T 3r4d_A 8 PPQVAEDNNVLLLVHNL--------------------------PLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAY 61 (208)
T ss_dssp SSEEETTCCEEEEEECC--------------------------CSSCSEEEEEESSCCCGGGEEEEEEGGGTEEEECTTC
T ss_pred cceeecCCcEEEEEeCC--------------------------CCCceEEEeccCCCCCccceEEEEecCCCccccCccc
Confidence 36788999999999988 788889999986532211
Q ss_pred CCceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCC-ceEEEEEeece------ee--eeccccCCceEEEEEEEEccC
Q psy7039 184 GGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLG-TATASAHVTGT------EF--TDNNVHEGKAYEYRVSAVNAA 254 (516)
Q Consensus 184 ~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g-~~~~~~~~~~~------~~--~~~~l~~g~~~~~~~~~~~~~ 254 (516)
..|+.+. .+.+|.|.+++.+|+|.|+|.+.+..+ .......+.+. .+ ....+..|..+.+.|.+ .
T Consensus 62 ~~r~~~~---~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~i~~~~~~~~~g~~v~l~C~~---~ 135 (208)
T 3r4d_A 62 SGREIIY---SNGSLLFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNTTVKELDSVTLTCLS---N 135 (208)
T ss_dssp CSSEEEC---TTSCEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEEEECCCCCCEEEESCSSCCTTCCEEEEEEC---S
T ss_pred cceeEEe---cCCeEEEccccccCCeEEEEEEEcccCceeEEEEEEEeccCCCCCEEecCCceEeeCCCEEEEEEC---C
Confidence 1122222 234799999999999999999999853 33333322221 11 11227789999999997 6
Q ss_pred CCCCceecccccc---cceEEEEEecceeeEEEccCCCCCceEEEEEEEecCCCcc-eeEEEEEecCCC
Q psy7039 255 GTEKPKISLDALI---GKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDM-ADIEVVVVSKPG 319 (516)
Q Consensus 255 g~p~p~i~W~~~~---~~~~~~~~~~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~-~~~~l~v~~~p~ 319 (516)
|.| |.+.|.+.. ..............|.|.++..+|.|.|+|.|.|..|... ..+.|.|..++.
T Consensus 136 ~~p-p~i~W~~~g~~l~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~s~~~~l~v~~~~~ 203 (208)
T 3r4d_A 136 DIG-ANIQWLFNSQSLQLTERMTLSQNNSILRIDPIKREDAGEYQCEISNPVSVRRSNSIKLDIIFDPH 203 (208)
T ss_dssp CTT-CEEEEEETTEECCCCSSEEEETTTTEEEESSCCGGGCEEEEEEEECTTCCEECCCEEECCC----
T ss_pred CCC-CceEEEECCEeCCCCCCeEEcCCCCEEEEeccCHHhCeEEEEEEecCCCcccCCceeeeEEeCCc
Confidence 655 799996521 1111122334557899999999999999999999999864 457777666554
|
| >3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ... | Back alignment and structure |
|---|
Probab=99.52 E-value=3.5e-14 Score=128.77 Aligned_cols=170 Identities=14% Similarity=0.183 Sum_probs=114.1
Q ss_pred ccccCCceEEEEEEEEccCCCCCceecccccc-c------------------ceEEEEEecceeeEEEccCCCCCceEEE
Q psy7039 236 NNVHEGKAYEYRVSAVNAAGTEKPKISLDALI-G------------------KRIKEFVTSTTASLNIKNSVRKDSGIYK 296 (516)
Q Consensus 236 ~~l~~g~~~~~~~~~~~~~g~p~p~i~W~~~~-~------------------~~~~~~~~~~~~~l~i~~l~~~d~g~y~ 296 (516)
..+.+|+.+.|.|.+ .|.+.+.+.|.+.. + .++..........|.|.+++.+|+|.|+
T Consensus 11 ~~v~~G~~v~L~C~~---~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~ 87 (213)
T 3d9a_L 11 LSVTPGNSVSLSCRA---SQSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETEDFGMYF 87 (213)
T ss_dssp EEECTTCCEEEEEEE---SSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred EEEeCCCcEEEEEEC---CCCCCCCEEEEEeCCCCCcEEEEEEcccccccccccEEEEcCCCEEEEEECCCChhhCEEEE
Confidence 456789999999998 78888899996421 1 2344444456679999999999999999
Q ss_pred EEEEecCCCcc-eeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEE
Q psy7039 297 IEAKNDYGIDM-ADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTI 375 (516)
Q Consensus 297 c~a~n~~g~~~-~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l 375 (516)
|.|.|..+... ....+.|...+.+|. +.+. ........|+.+.|
T Consensus 88 C~~~~~~~~~~~~~~~l~V~~~~~~p~--v~~~---------------------------------~~~~~~~~g~~~~l 132 (213)
T 3d9a_L 88 CQQSNSWPYTFGGGTKLEIKRADAAPT--VSIF---------------------------------PPSSEQLTSGGASV 132 (213)
T ss_dssp EEECSSSSCEECCCEEEEECCCCBCCE--EEEE---------------------------------CCCHHHHHTTEEEE
T ss_pred EeeecCCcceeCCCEEEEEecCCCCce--eEeE---------------------------------CCChhhcCCCcEEE
Confidence 99999876532 234666654332221 0000 00011236889999
Q ss_pred EEEEee-ecCC-ceEEEECCeecCCCCceEE--EEcCC-----eEEEEEcCceecCCceEEEEEEEcCCCceeEEEEE
Q psy7039 376 TVPFSG-RPKP-TPIWTVNGDEVSPDGRIKF--ETSEN-----QTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKV 444 (516)
Q Consensus 376 ~C~~~g-~p~~-~i~W~~~~~~l~~~~~~~~--~~~~~-----~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l 444 (516)
.|.+.| .|.+ .+.|++++..+........ ....+ .+.|.|.++.. .|.|.|+|.|.|..........+
T Consensus 133 ~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~-~d~G~Y~C~a~n~~~~~~~~~~i 209 (213)
T 3d9a_L 133 VCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEY-ERHNSYTCEATHKTSTSPIVKSF 209 (213)
T ss_dssp EEEEEEEBSSCCEEEEEETTEEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHH-HHCCEEEEEEECTTCSSCEEEEE
T ss_pred EEEEeeecCCceEEEEEcCCCcCcceeeecCCCccCCCCCEEEEEEEEEecccc-CCCCEEEEEEEEccCCCceEEEe
Confidence 999988 5554 7999999987754411100 00111 24799999999 99999999999988765444333
|
| >3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=6.8e-14 Score=130.15 Aligned_cols=129 Identities=13% Similarity=0.122 Sum_probs=83.5
Q ss_pred ceeeEEEccCCCCCceEEEEEEEecCCCcceeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccc
Q psy7039 278 TTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKIT 357 (516)
Q Consensus 278 ~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~ 357 (516)
....|.|.+++.+|+|.|+|.+.|..+.....+.|.|...|....
T Consensus 80 ~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~L~V~~~P~v~~----------------------------------- 124 (248)
T 3pv7_A 80 GDASLRLPGIQLEEAGEYRCEVVVTPLKAQGTVQLEVVASPASRL----------------------------------- 124 (248)
T ss_dssp TBCCEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEEBCCEEEE-----------------------------------
T ss_pred CcEEEEeCCCCHHHCeEEEEEEEeCCccceeEEEEEEecCCceEE-----------------------------------
Confidence 356799999999999999999999887777778888876443210
Q ss_pred cccccccEEEEcCCeEEEEEEEee-ecCC-ceEEEECCeecCCCC------c-eEEEEcCC-----eEEEEEcCceecCC
Q psy7039 358 SDLSIRDMTVLAGEEFTITVPFSG-RPKP-TPIWTVNGDEVSPDG------R-IKFETSEN-----QTIYRNKSAKRATD 423 (516)
Q Consensus 358 ~~~~~~~~~v~~g~~~~l~C~~~g-~p~~-~i~W~~~~~~l~~~~------~-~~~~~~~~-----~~~l~i~~~~~~~~ 423 (516)
........|..+.|.|.+.| .|.+ .+.|++++..+.... . ........ ...|.|..... +|
T Consensus 125 ----~~~~~~~~~~~~~L~C~~~g~~P~pi~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~-~d 199 (248)
T 3pv7_A 125 ----LLDQVGMKENEDKYMCESSGFYPEAINITWEKQTQKFPHPIEISEDVITGPTIKNMDGTFNVTSCLKLNSSQE-DP 199 (248)
T ss_dssp ----ECC--------CEEEEEEEEEBSSCCEEEEEEECSSSCSCEEECTTEEEEEEEECTTSCEEEEEEEECC--CC-CT
T ss_pred ----ecCCccccCCCcEEEEEEccEECCCeEEEEEECCccCCCccccccceeecccEECCCCCEEEEEEEEEcCccc-cC
Confidence 01122345677789999998 7888 999999986442210 0 01111111 24688888888 99
Q ss_pred ceEEEEEEEcCCCce--eEEEEEEE
Q psy7039 424 SGSYTIQLVNTVGSD--SASCKVYV 446 (516)
Q Consensus 424 ~g~y~c~a~n~~G~~--s~s~~l~v 446 (516)
.|.|+|.|.|..+.. ..++.|.|
T Consensus 200 ~g~YtC~a~n~~~~~~~~~~v~l~V 224 (248)
T 3pv7_A 200 GTVYQCVVRHASLHTPLRSNFTLTA 224 (248)
T ss_dssp TCEEEEEEECTTCSSCEEEEECC--
T ss_pred CCEEEEEEECCCCCCCcEEEEEEEE
Confidence 999999999998874 44555666
|
| >2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} | Back alignment and structure |
|---|
Probab=99.51 E-value=4.7e-14 Score=131.18 Aligned_cols=158 Identities=16% Similarity=0.129 Sum_probs=107.5
Q ss_pred CcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecC---cCceeeEEeeCCeeec-------------
Q psy7039 119 STLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLS---EPFLNHGWSINGQVCQ------------- 182 (516)
Q Consensus 119 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~p~~~i~W~~~~~~~~------------- 182 (516)
.++..+.+.+|+.+.|.|.+. + .+.+.+.|++++....
T Consensus 7 ~~~~~v~v~~G~~v~L~C~~~--------------------------~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~ 60 (250)
T 2fbo_J 7 TTHTEVEVHAGGTVELPCSYQ--------------------------LANDTQPPVISWLKGASPDRSTKVFKGNYNWQG 60 (250)
T ss_dssp CSCSEEEECTTSCEEECCEEE--------------------------ECSCCSCCEEEEEEEEETTEEEEEEEEEECCCB
T ss_pred cCCCceEEecCCeEEEEEEeE--------------------------cCCCCCceEEEEEeCCCCCccEEEEeecccccc
Confidence 344568899999999999998 5 7788899998764320
Q ss_pred -----------------cCCceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCce-------EEEEEeece----ee-
Q psy7039 183 -----------------IGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTA-------TASAHVTGT----EF- 233 (516)
Q Consensus 183 -----------------~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~-------~~~~~~~~~----~~- 233 (516)
...|..+.. ....+|.|.+++.+|+|.|+|.+.+..+.. ...+.+... .+
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~ 139 (250)
T 2fbo_J 61 EGLGFVESDSYKESFGDFLGRASVAN-LAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHTPSNNVH 139 (250)
T ss_dssp TTBCCCTTSEEEEECGGGTTTEECSC-TTSCCEEECSCCGGGCEEEEEEEECTTCCSGGGEEEEEEEEEETTTSCCSCCE
T ss_pred ccccccccccccccCCCcCceEEecc-CCcceEEEeeCChhhCeEEEEEeccCccCCcccccceeEEEEEeccCCCCeEE
Confidence 112222221 124589999999999999999999977643 222222221 11
Q ss_pred ----eeccccCCceEEEEEEEEccCCCCCceecccccccc-------eEE-E------------------EEecceeeEE
Q psy7039 234 ----TDNNVHEGKAYEYRVSAVNAAGTEKPKISLDALIGK-------RIK-E------------------FVTSTTASLN 283 (516)
Q Consensus 234 ----~~~~l~~g~~~~~~~~~~~~~g~p~p~i~W~~~~~~-------~~~-~------------------~~~~~~~~l~ 283 (516)
....+.+|..+.|.|.+ .|.|.|.+.|.+.... ... + ........|.
T Consensus 140 ~~~~~~~~v~~g~~v~L~C~~---~g~p~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 216 (250)
T 2fbo_J 140 VSTAEVVQVDEGNDITMTCPC---TDCANANVTWYTGPTFFENYETGTYQPLANKNQFGITWFSSEIAGRASFSGARNLV 216 (250)
T ss_dssp ECCCSEEECCTTCCEEECCCE---ESCTTCEEEEEEEEECSSCSSSCEEEEEEEECTTSCEEECTTTTTSEEEETTTEEE
T ss_pred EecCceEEecCCCcEEEEEEe---cCCCCCeeEEEeCCCcccccccCcceeEeccCCCCccccCceEecccccCCccEEE
Confidence 12334569999999998 7888899999662110 000 0 0011336899
Q ss_pred EccCCCCCceEEEEEEEecCCCc
Q psy7039 284 IKNSVRKDSGIYKIEAKNDYGID 306 (516)
Q Consensus 284 i~~l~~~d~g~y~c~a~n~~g~~ 306 (516)
|.++..+|+|.|+|.|.|..|..
T Consensus 217 i~~v~~~D~G~Y~C~a~N~~g~~ 239 (250)
T 2fbo_J 217 IRAAKITDAGRVWCELATGQGEL 239 (250)
T ss_dssp ECSCCGGGCEEEEEEEESSSSGG
T ss_pred EecCCcccCEEEEEEecCCcccc
Confidence 99999999999999999976653
|
| >2d9q_B Granulocyte colony-stimulating factor receptor; cytokine, ligand-receptor complex, signaling protein-cytokin; HET: NAG; 2.80A {Homo sapiens} SCOP: b.1.1.3 b.1.2.1 b.1.2.1 | Back alignment and structure |
|---|
Probab=99.51 E-value=1.6e-12 Score=125.43 Aligned_cols=258 Identities=10% Similarity=0.012 Sum_probs=150.4
Q ss_pred cceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCc-----CceeeEEeeCCeeeccCCceEEeecCC-e
Q psy7039 122 NDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSE-----PFLNHGWSINGQVCQIGGRADVQTTKS-E 195 (516)
Q Consensus 122 ~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----p~~~i~W~~~~~~~~~~~~~~~~~~~~-~ 195 (516)
....+..|++++|.|.+. +. |.+.|.|++++..+.. .+......+. .
T Consensus 8 ~~~~v~~G~~v~l~C~~~--------------------------~~~~~~~~~~~i~W~~~g~~l~~-~~~~~~~~~~~~ 60 (313)
T 2d9q_B 8 SAPIVHLGDPITASCIIK--------------------------QNCSHLDPEPQILWRLGAELQPG-GRQQRLSDGTQE 60 (313)
T ss_dssp SCSEECTTCCEEEEECCC--------------------------TTSCSSCSCSCCEEESSSCBCTT-CEECCCSSSCCC
T ss_pred CCcEEcCCCCEEEEEEEC--------------------------CCCCCCCcccceEEEeCCEECCc-cceEEEecCeEE
Confidence 346688999999999999 65 5789999999987753 3322222332 2
Q ss_pred eEEEeccCCCCCCeeEEEEEEcCCCceEEEEEeeceeeeeccccCCceEEEEEEEEccCC-CCCceecccccc----cce
Q psy7039 196 TVLDIPFCSRSDTGHYSLTLENNLGTATASAHVTGTEFTDNNVHEGKAYEYRVSAVNAAG-TEKPKISLDALI----GKR 270 (516)
Q Consensus 196 ~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~g-~p~p~i~W~~~~----~~~ 270 (516)
+.|.|.+++..|+|.|.|.+.+..+.....+.+ .....++....+.|.. .+ .....+.|.... ...
T Consensus 61 ~~L~i~~~~~~d~g~y~c~~~~~~~~~~~~~~l------~v~~~P~~P~~l~c~~---~~~~~~~~~~W~~~~~~~~~~~ 131 (313)
T 2d9q_B 61 SIITLPHLNHTQAFLSCSLNWGNSLQILDQVEL------RAGYPPAIPHNLSCLM---NLTTSSLICQWEPGPETHLPTS 131 (313)
T ss_dssp EEEEESCCCSSEEEEEEEEESSSSEEEEEEEEE------EECCCCCCCEEEEEEE---ETTTTEEEEEEECCSCCSSCCE
T ss_pred EEEEEeccCCCccceEEeeecCCCceeEEEEEE------ccCCCCCCCccceeeE---CCCCccEEEEecCCCCCCCcee
Confidence 789999999999999999885532221111111 1123556667777766 32 234566674311 111
Q ss_pred EEEEE-------------------ecceeeEEE--ccCCCCCceEEEEEEEecCCCcce-eEEEEEe--cCCCCCCCCce
Q psy7039 271 IKEFV-------------------TSTTASLNI--KNSVRKDSGIYKIEAKNDYGIDMA-DIEVVVV--SKPGPPTGPID 326 (516)
Q Consensus 271 ~~~~~-------------------~~~~~~l~i--~~l~~~d~g~y~c~a~n~~g~~~~-~~~l~v~--~~p~~p~~p~~ 326 (516)
+.+.. ........| .++.+...|.++|.|.|..|.... ...+... ..|.+|.. +.
T Consensus 132 Y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~Y~f~V~A~N~~G~~~s~~~~~~~~~~~~p~pP~~-~~ 210 (313)
T 2d9q_B 132 FTLKSFKSRGNCQTQGDSILDCVPKDGQSHCSIPRKHLLLYQNMGIWVQAENALGTSMSPQLCLDPMDVVKLEPPML-RT 210 (313)
T ss_dssp EEEEEEECCTTSCSCCCCEEEECCCTTCSEEEEEGGGCCSSSCEEEEEEEEETTEEEECCCEEECGGGGEECCCCEE-EE
T ss_pred EEEEEEecCCCcccCCcccccCCCCCCCcEEEECccccccceeEEEEEEEECCCCCccCccEEEehhheeccCcCce-eE
Confidence 22211 011233445 348899999999999999987532 2222222 23444322 44
Q ss_pred eeec------cCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeeecCCceEEE-ECCeecCCC
Q psy7039 327 YTTV------TPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWT-VNGDEVSPD 399 (516)
Q Consensus 327 ~~~~------~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~-~~~~~l~~~ 399 (516)
+... ..+++.|+|++|... +..+.+|. +.|. ..+.. .
T Consensus 211 ~~~~~~~~~~~~~~l~l~W~~p~~~-~~~~l~Y~--------------------------------v~y~~~~~~~---~ 254 (313)
T 2d9q_B 211 MDPSPEAAPPQAGCLQLSWEPWQPG-LHINQKCE--------------------------------LRHKPQRGEA---S 254 (313)
T ss_dssp CCC-------CCSCEEEEEECCGGG-TTSCEEEE--------------------------------EEEEESSSCC---C
T ss_pred EEEecccccCCCCeEEEEECCCCCC-CceeEEEE--------------------------------EEEccCCCCC---C
Confidence 4444 468999999998643 32244441 2222 11100 0
Q ss_pred CceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCce---eEEEEEEEecCCCCC
Q psy7039 400 GRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSD---SASCKVYVVDKPSPP 453 (516)
Q Consensus 400 ~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~---s~s~~l~v~~~p~~P 453 (516)
-............+.|.+|.+ ...|.++++|.|..|.+ ..+..+.+.+...+|
T Consensus 255 w~~~~~~~~~~~~~~l~~L~p-~t~Y~~rVra~~~~g~G~wS~wS~~~~~~T~~~~P 310 (313)
T 2d9q_B 255 WALVGPLPLEALQYELCGLLP-ATAYTLQIRCIRWPLPGHWSDWSPSLELRTTERAA 310 (313)
T ss_dssp CEEEEEECSCEEEEEECSCCS-CCCEEEEEEEEECSSCCCCCCCCCCEEECCCC---
T ss_pred cEEcccccCcceEEEEeCCCC-CCeEEEEEEeeECCCCCccCCCCCccceeCCccCC
Confidence 000011123446789999999 99999999999986553 244556666666655
|
| >2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A | Back alignment and structure |
|---|
Probab=99.51 E-value=1.1e-13 Score=123.55 Aligned_cols=133 Identities=20% Similarity=0.280 Sum_probs=103.2
Q ss_pred CcEEEeCCCcCCCeEEEEEEEecCCCCCCCCCCCcceEeccCCCCCccccCcccceEEecCCeEEEEEeeeeccccccCc
Q psy7039 69 ETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSP 148 (516)
Q Consensus 69 ~~~~~i~~l~~~~~y~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~ 148 (516)
...|.|.+++..|.|.|+|.|.|..|... ....+.+...+....|.+. ..+..+.+.+|+.+.|.|.+.
T Consensus 61 ~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~-~~~~l~V~~~p~~~~~~~~-~~~~~~~~~~g~~~~l~C~~~--------- 129 (197)
T 2j8h_A 61 YHQLIIASVTDDDATVYQVRATNQGGSVS-GTASLEVEVPAKIHLPKTL-EGMGAVHALRGEVVSIKIPFS--------- 129 (197)
T ss_dssp EEEEEECSCCGGGCSEEEEEEEETTEEEE-EEEEEEEEEEEEECCSSCB-TTBEEEEEETTCCCEEEEEEE---------
T ss_pred EEEEEECcCCHHhCEEEEEEEEECCCcee-EEEEEEEcCCCcCCCCccc-cccCeEEEeCCCEEEEEEEEE---------
Confidence 45899999999999999999998876532 1112222222221222222 334567889999999999999
Q ss_pred cccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEeecCCeeEEEecc-CCCCCCeeEEEEEEcCCCceEEEEE
Q psy7039 149 LRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPF-CSRSDTGHYSLTLENNLGTATASAH 227 (516)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~-~~~~d~g~Y~c~~~~~~g~~~~~~~ 227 (516)
+.|.+.+.|++++..+....++.+...+....|.|.+ ++.+|+|.|+|.+.|..|.......
T Consensus 130 -----------------g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~N~~g~~~~~~~ 192 (197)
T 2j8h_A 130 -----------------GKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVE 192 (197)
T ss_dssp -----------------EESCCEEEEEESSCEECSSSSCEEEECSSEEEEECTTCCCGGGCEEEEEEEEETTEEEEEEEE
T ss_pred -----------------ecCCCcEEEEECCEEeecCCCEEEEEcCCceEEEEeCCCCcccCEeEEEEEEeCCCcEeEEEE
Confidence 8999999999999999888888887777888999999 9999999999999999988766554
Q ss_pred ee
Q psy7039 228 VT 229 (516)
Q Consensus 228 ~~ 229 (516)
+.
T Consensus 193 l~ 194 (197)
T 2j8h_A 193 LD 194 (197)
T ss_dssp EE
T ss_pred EE
Confidence 43
|
| >2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.51 E-value=7.7e-14 Score=123.55 Aligned_cols=151 Identities=15% Similarity=0.061 Sum_probs=104.4
Q ss_pred CCCccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEee
Q psy7039 112 LAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQT 191 (516)
Q Consensus 112 ~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~ 191 (516)
.+|.|. ..+. ..+.+|+.+.|.|.+. + +.+.+.|++++...
T Consensus 7 ~~P~i~-~~p~-~~v~~G~~v~L~C~~~--------------------------~-~~~~~~W~k~g~~~---------- 47 (184)
T 2gi7_A 7 PKPSLQ-ALPS-SLVPLEKPVTLRCQGP--------------------------P-GVDLYRLEKLSSSR---------- 47 (184)
T ss_dssp CCCEEE-EESC-SEEETTCCEEEEEECS--------------------------T-TCSEEEEEETTTCC----------
T ss_pred CCCeEE-eCCC-ccccCCCcEEEEEeCC--------------------------C-CCCEEEEEECCccc----------
Confidence 456665 3333 3789999999999998 6 67899999987651
Q ss_pred cCCeeEEEeccCCCCCCeeEEEEEEcCCCce----EEEEEeec----eee---eeccccCCceEEEEEEEEccCCCCCce
Q psy7039 192 TKSETVLDIPFCSRSDTGHYSLTLENNLGTA----TASAHVTG----TEF---TDNNVHEGKAYEYRVSAVNAAGTEKPK 260 (516)
Q Consensus 192 ~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~----~~~~~~~~----~~~---~~~~l~~g~~~~~~~~~~~~~g~p~p~ 260 (516)
......|.|.+++.+|+|.|+|.+.|..|.. ...+.+.. ..+ ....+.+|+.+.|.|.+ .+. ++.
T Consensus 48 ~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~~~l~V~~~~~~p~i~~~p~~~v~~G~~v~l~C~~---~~~-~~~ 123 (184)
T 2gi7_A 48 YQDQAVLFIPAMKRSLAGRYRCSYQNGSLWSLPSDQLELVATGVFAKPSLSAQPGPAVSSGGDVTLQCQT---RYG-FDQ 123 (184)
T ss_dssp EESSSEEEESSCCGGGCEEEEEEEEETTEEBCCCCCEEEEEESSSCCCEEEEECCCSSCCTTCEEEEEEC---SSC-CCE
T ss_pred cCcccEEEECcCChhhCceEEEEEEcCCCccCCCCCEEEEecCcCCCCEEEeCCCceecCCCcEEEEEEc---CCC-CcE
Confidence 1234689999999999999999999976532 12233211 111 22356789999999986 444 468
Q ss_pred ecccccccce-EEEEEecceeeEEEccCCCCCceEEEEEEEecCCC
Q psy7039 261 ISLDALIGKR-IKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGI 305 (516)
Q Consensus 261 i~W~~~~~~~-~~~~~~~~~~~l~i~~l~~~d~g~y~c~a~n~~g~ 305 (516)
+.|.+..... ...........|.|.+++.+|+|.|+|.|.|..+.
T Consensus 124 ~~w~k~g~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~~~ 169 (184)
T 2gi7_A 124 FALYKEGDPAPYKNPERWYRASFPIITVTAAHSGTYRCYSFSSRDP 169 (184)
T ss_dssp EEEEECCCCTTSCCCCEEEEESSSEEEETTCCSEEEEEEEECTTST
T ss_pred EEEEECCCcCcceecCCCceEEEEEccCCccCCeEEEEEEEeCCCC
Confidence 8886521110 00011234568899999999999999999997643
|
| >1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H | Back alignment and structure |
|---|
Probab=99.51 E-value=4.5e-13 Score=125.35 Aligned_cols=170 Identities=18% Similarity=0.148 Sum_probs=117.4
Q ss_pred ccccCCceEEEEEEEEccCCCC--Cceecccccc-c-----------------------ceEEEEEe--cceeeEEEccC
Q psy7039 236 NNVHEGKAYEYRVSAVNAAGTE--KPKISLDALI-G-----------------------KRIKEFVT--STTASLNIKNS 287 (516)
Q Consensus 236 ~~l~~g~~~~~~~~~~~~~g~p--~p~i~W~~~~-~-----------------------~~~~~~~~--~~~~~l~i~~l 287 (516)
..+.+|+.+.|.|.+ .|.+ .+.+.|.+.. + .++.+... .....|.|.++
T Consensus 10 ~~v~~G~~v~L~C~~---~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v 86 (256)
T 1nqb_A 10 ELVKPGASVKLSCKA---SGYTFTSYWMHWVKQRPGRGLEWIGRIDPNSGGTKYNEKFKSKATLTVDKPSSTAYMQLSSL 86 (256)
T ss_dssp EEECTTCCEEEEEEE---CSSCGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGTTTEEEEEETTTTEEEEEECSC
T ss_pred eeecCCCcEEEEEEe---ccccCCCceEEEEEECCCCCcEEEEEEecCCCceeeCcccCCeEEEEEecCCCEEEEEECcC
Confidence 456789999999998 6654 6789996521 1 12222221 34568999999
Q ss_pred CCCCceEEEEEEEecCCC---c--ceeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeecccccccccc
Q psy7039 288 VRKDSGIYKIEAKNDYGI---D--MADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSI 362 (516)
Q Consensus 288 ~~~d~g~y~c~a~n~~g~---~--~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~ 362 (516)
+.+|+|.|+|.+.|..|. . .....|.|...+... ..+
T Consensus 87 ~~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~~~v~--------------------------------------~~p 128 (256)
T 1nqb_A 87 TSEDSAVYYCARYDYYGSSYFDYWGQGTTVTVSSDIELT--------------------------------------QTP 128 (256)
T ss_dssp CGGGCEEEEEEECCTTSSSSCSEECCCEEEEECCCCCEE--------------------------------------EEC
T ss_pred ChhhCEEEEEEEeeccCccceeEEcCceeeeecccccEE--------------------------------------ecC
Confidence 999999999999998663 1 123455554322110 123
Q ss_pred ccEEEEcCCeEEEEEEEeeecCC-----ceEEEE--CCeecC------------CCCceEEEEcCCeEEEEEcCceecCC
Q psy7039 363 RDMTVLAGEEFTITVPFSGRPKP-----TPIWTV--NGDEVS------------PDGRIKFETSENQTIYRNKSAKRATD 423 (516)
Q Consensus 363 ~~~~v~~g~~~~l~C~~~g~p~~-----~i~W~~--~~~~l~------------~~~~~~~~~~~~~~~l~i~~~~~~~~ 423 (516)
....+..|+.+.|.|.+.+.+.+ .+.|++ ++..+. ...++..........|.|.++.. .|
T Consensus 129 ~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~-~D 207 (256)
T 1nqb_A 129 LSLPVSLGDQASISCRSSQSIVHSNGNTYLEWYLQKPGQSPKLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEA-ED 207 (256)
T ss_dssp SEEEECTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCG-GG
T ss_pred cEEEEecCCcEEEEeEecCcccccccceEEEEEEECCCCCcEEEEEEeCCCCCccCCcEEEEccCCEEEEEECCCCh-HH
Confidence 44678899999999999988765 899999 454321 13466665555667899999999 99
Q ss_pred ceEEEEEEEcCCCc-eeEEEEEEEe
Q psy7039 424 SGSYTIQLVNTVGS-DSASCKVYVV 447 (516)
Q Consensus 424 ~g~y~c~a~n~~G~-~s~s~~l~v~ 447 (516)
+|.|+|.|.|..+. -.....|.|.
T Consensus 208 sG~Y~C~a~~~~~~~fg~gt~l~V~ 232 (256)
T 1nqb_A 208 LGVYYCFQGSHVPYTFGGGTKLEIK 232 (256)
T ss_dssp CEEEEEEECSSSSCEECCCEEEEEC
T ss_pred CEEEEEEEccCCceEECCCEEEEEE
Confidence 99999999986443 2233556665
|
| >2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 | Back alignment and structure |
|---|
Probab=99.51 E-value=7.8e-13 Score=122.83 Aligned_cols=166 Identities=13% Similarity=0.155 Sum_probs=112.2
Q ss_pred ccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcC--ceeeEEeeCC--eee---------------
Q psy7039 121 LNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEP--FLNHGWSING--QVC--------------- 181 (516)
Q Consensus 121 ~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p--~~~i~W~~~~--~~~--------------- 181 (516)
+..+.+.+|+++.|.|.+. +.| .+.+.|+++. ...
T Consensus 9 p~~~~v~~G~~v~L~C~~~--------------------------g~p~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~ 62 (247)
T 2ghw_B 9 SGGGVVQPGKSLRLSCAAS--------------------------GFAFSSYAMHWVRQAPGKGLEWVAVISYDGSNKYY 62 (247)
T ss_dssp ECCEEECTTCCEEEEEEEE--------------------------SSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEE
T ss_pred cCCEEEecCCcEEEEEEec--------------------------cccCCCceEEEEEeCCCCceEEEEEEecCCCceee
Confidence 3458899999999999999 766 5778898732 111
Q ss_pred --ccCCceEEee--cCCeeEEEeccCCCCCCeeEEEEEEcCCCceE----EEEEeece----------------ee----
Q psy7039 182 --QIGGRADVQT--TKSETVLDIPFCSRSDTGHYSLTLENNLGTAT----ASAHVTGT----------------EF---- 233 (516)
Q Consensus 182 --~~~~~~~~~~--~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~----~~~~~~~~----------------~~---- 233 (516)
....|+.+.. .....+|.|.+++.+|+|.|.|.+.|..+... ..+.+... .+
T Consensus 63 ~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (247)
T 2ghw_B 63 ADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCARDRSYYLDYWGQGTLVTVSSGGGGSGGGGSGGGGSETTLTQSP 142 (247)
T ss_dssp CTTTTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEETTEEEEECCCEEEEECSCC------------CCCCEEEEC
T ss_pred CccccCcEEEEEeCCCCEEEEEECcCCHHHCEEEEEeeeccCCccccCCceEEEEecccccccccccCCCCcceEEEccC
Confidence 1124666554 34567899999999999999999998622211 12222211 11
Q ss_pred eeccccCCceEEEEEEEEccCCCCCceeccccc-cc------------------ceEEEEEecceeeEEEccCCCCCceE
Q psy7039 234 TDNNVHEGKAYEYRVSAVNAAGTEKPKISLDAL-IG------------------KRIKEFVTSTTASLNIKNSVRKDSGI 294 (516)
Q Consensus 234 ~~~~l~~g~~~~~~~~~~~~~g~p~p~i~W~~~-~~------------------~~~~~~~~~~~~~l~i~~l~~~d~g~ 294 (516)
....+.+|+.+.|.|.+ .|.+.+.+.|.+. .+ .++..........|.|.+++.+|+|.
T Consensus 143 ~~~~v~~G~~v~L~C~~---~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~ 219 (247)
T 2ghw_B 143 ATLSLSPGERATLSCRA---SQSVRSNLAWYQQKPGQAPRPLIYDASTRATGIPDRFSGSGSGTDFTLTISRLEPEDFAV 219 (247)
T ss_dssp SEEEECTTSCEEEEEEE---SSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEECSSSEEEEEECSCCGGGCEE
T ss_pred CEEEecCCCcEEEEEEe---CCCccceEEEEEECCCCCcEEEEEEeccCCCccCCCEEEecCCCeEEEEECcCCHHHCEE
Confidence 12346789999999998 7888889999662 11 12222223345679999999999999
Q ss_pred EEEEEEecCCCc-ceeEEEEEe
Q psy7039 295 YKIEAKNDYGID-MADIEVVVV 315 (516)
Q Consensus 295 y~c~a~n~~g~~-~~~~~l~v~ 315 (516)
|+|.|.|..+.. .....|.|.
T Consensus 220 Y~C~a~~~~~~~~g~~t~l~V~ 241 (247)
T 2ghw_B 220 YYCQQRSNWPPTFGQGTKVEVK 241 (247)
T ss_dssp EEEEECSSSSCEECCCEEEEEC
T ss_pred EEEEEccCCCceEcCCEEEEEC
Confidence 999999864332 223466665
|
| >1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=2.7e-14 Score=125.47 Aligned_cols=157 Identities=17% Similarity=0.080 Sum_probs=112.6
Q ss_pred cccCCceEEEEEEEEccCCCCCc-eecccccccceEEEEEecceeeEEEccCCCCCceEEEEEEEecCCCcceeEEEEEe
Q psy7039 237 NVHEGKAYEYRVSAVNAAGTEKP-KISLDALIGKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVV 315 (516)
Q Consensus 237 ~l~~g~~~~~~~~~~~~~g~p~p-~i~W~~~~~~~~~~~~~~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~~~~l~v~ 315 (516)
.+.+|+.+.|.|.+ .|.+.+ .+.|.+.... .......|.|.+++.+|+|.|+|.+.|..+. ..+.+.|.
T Consensus 15 ~v~~G~~v~L~C~~---~~~~~~~~i~W~~~~~~-----~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~s--~~~~l~V~ 84 (176)
T 1f2q_A 15 RIFKGENVTLTCNG---NNFFEVSSTKWFHNGSL-----SEETNSSLNIVNAKFEDSGEYKCQHQQVNES--EPVYLEVF 84 (176)
T ss_dssp EEETTCCEEEECCT---TCC----CCEEEETTEE-----CSCCSSEEEECSCCGGGCEEEEEECTTSSCC--CCEEEEEE
T ss_pred ceecCCcEEEEEeC---CCCCCcceEEEEECCeE-----CCCCceEEEEeccceecCEEEEEEcCCcccc--ccEEEEEe
Confidence 57789999999987 666665 5889653211 1245679999999999999999999886543 34556665
Q ss_pred cCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEe-eecCCceEEEECCe
Q psy7039 316 SKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFS-GRPKPTPIWTVNGD 394 (516)
Q Consensus 316 ~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~-g~p~~~i~W~~~~~ 394 (516)
..+. .+ ......+..|+.+.|.|.+. +.|.+.+.|++++.
T Consensus 85 ~~~~------~~---------------------------------~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~ 125 (176)
T 1f2q_A 85 SDWL------LL---------------------------------QASAEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGE 125 (176)
T ss_dssp CSSE------EE---------------------------------EESCSEEETTSCEEEEEEEGGGCCEEEEEEEETTE
T ss_pred Ccce------ee---------------------------------cCCcceeeCCCCEEEEEEecCCCCceEEEEEECCE
Confidence 2111 00 11224678999999999995 56667999999998
Q ss_pred ecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCc-eeEEEEEEEecCCC
Q psy7039 395 EVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGS-DSASCKVYVVDKPS 451 (516)
Q Consensus 395 ~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~-~s~s~~l~v~~~p~ 451 (516)
.+... .....|.|.++.. .|+|.|+|.|.|..|. .+..+.|.|..+|.
T Consensus 126 ~~~~~--------~~~~~L~i~~v~~-~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~p~ 174 (176)
T 1f2q_A 126 ALKYW--------YENHNISITNATV-EDSGTYYCTGKVWQLDYESEPLNITVIKAPR 174 (176)
T ss_dssp ECCSC--------CCSSEEEESSCCG-GGCEEEEEEEEETTEEEECCCEEEEEECSCC
T ss_pred EEeee--------cCCCeEEECCCCc-ccCEEEEEEEEeCCcceEecCEEEEEecCCC
Confidence 77422 1234799999999 9999999999997544 56668888887654
|
| >3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA, IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB: 3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A | Back alignment and structure |
|---|
Probab=99.51 E-value=4.8e-13 Score=125.14 Aligned_cols=186 Identities=17% Similarity=0.117 Sum_probs=116.9
Q ss_pred eccccCCceEEEEEEEEccCCCCCceecccccc-c----------------------ceEEEEE--ecceeeEEEccCCC
Q psy7039 235 DNNVHEGKAYEYRVSAVNAAGTEKPKISLDALI-G----------------------KRIKEFV--TSTTASLNIKNSVR 289 (516)
Q Consensus 235 ~~~l~~g~~~~~~~~~~~~~g~p~p~i~W~~~~-~----------------------~~~~~~~--~~~~~~l~i~~l~~ 289 (516)
...+.+|+.+.|.|.+... ..+.+.+.|.+.. + .++.+.. ......|.|.+++.
T Consensus 17 ~~~v~~G~~v~L~C~~~~~-~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~ 95 (257)
T 3gkz_A 17 PSLVKPSQTLSLTCSVTGD-SVTSGYWSWIRQFPGNKLDYMGYISYRGSTYYNPSLKSRISITRDTSKNQVYLQLKSVSS 95 (257)
T ss_dssp CSEECTTCCEEEEEEEEES-CCSSCEEEEEEECTTSCEEEEEEEETTCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCG
T ss_pred CeEEcCCCcEEEEEEEEcc-cccceEEEEEEECCCCCcEEEEEEecCCcEEecccccccEEEEEecCCceEEEEECCCCh
Confidence 3457889999999998321 1357888996521 1 1122221 12345799999999
Q ss_pred CCceEEEEEEEecCCC----cceeEEEEEecCCCC-------CCCCceeeeccCCeeEEEecCCCCCCCCceeecccccc
Q psy7039 290 KDSGIYKIEAKNDYGI----DMADIEVVVVSKPGP-------PTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITS 358 (516)
Q Consensus 290 ~d~g~y~c~a~n~~g~----~~~~~~l~v~~~p~~-------p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~ 358 (516)
+|+|.|+|.|.|..+. ......|.|...+.. ...+..+
T Consensus 96 ~DsG~Y~C~~~n~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~------------------------------- 144 (257)
T 3gkz_A 96 EDTATYYCSYFDSDDYAMEYWGQGTSVTVSGGGGSGGGGSGGGGSQIVL------------------------------- 144 (257)
T ss_dssp GGCEEEEEEEECTTCTTCEEECCCEEEEEC---------CTTCCCCCCE-------------------------------
T ss_pred hhCEEEEEEEecCCCcceeEEcCCEEEeecCchhhcccccCCCccceEE-------------------------------
Confidence 9999999999987322 223455666544110 0000000
Q ss_pred ccccccEEEEcCCeEEEEEEEeeecCC-ceEEEEC--CeecC------------CCCceEEEEcCCeEEEEEcCceecCC
Q psy7039 359 DLSIRDMTVLAGEEFTITVPFSGRPKP-TPIWTVN--GDEVS------------PDGRIKFETSENQTIYRNKSAKRATD 423 (516)
Q Consensus 359 ~~~~~~~~v~~g~~~~l~C~~~g~p~~-~i~W~~~--~~~l~------------~~~~~~~~~~~~~~~l~i~~~~~~~~ 423 (516)
...+....+.+|+.+.|.|.+.+.+.+ .+.|++. +..+. ...++.........+|.|.++.. .|
T Consensus 145 ~~~p~~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~-~D 223 (257)
T 3gkz_A 145 TQSPAIMSASPGEKVTLTCSASSSVSSSHLYWYQQKPGSSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISSMEA-ED 223 (257)
T ss_dssp ECSCSEEEECTTCCEEEEEEESSCCCGGGEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCG-GG
T ss_pred EcCCceEEEeCCCcEEEEEEEccCccceEEEEEEECCCCCcEEEEEEccccCCCcCCCEEEecCCCEEEEEECCCCh-HH
Confidence 012345678899999999999998887 8999984 22111 12566666666677899999999 99
Q ss_pred ceEEEEEEEcCCCce-eEEEEEEEecCCCCC
Q psy7039 424 SGSYTIQLVNTVGSD-SASCKVYVVDKPSPP 453 (516)
Q Consensus 424 ~g~y~c~a~n~~G~~-s~s~~l~v~~~p~~P 453 (516)
+|.|.|.|.|..... ..-..|.|...+.+|
T Consensus 224 ~G~Y~C~~~~~~~~~fg~gt~l~v~~~~~~~ 254 (257)
T 3gkz_A 224 AASYFCHQWSSFPFTFGSGTKLEIKRAPHHH 254 (257)
T ss_dssp CEEEEEEECSSSSCEECCCEEEEECCC----
T ss_pred CEEEEEEEccCCceEEcCCEEEEEEeCCCCC
Confidence 999999998864432 223466676554444
|
| >2yuw_A Myosin binding protein C, SLOW type; fibronectin III domain, SLOW- type protein, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.6e-13 Score=110.40 Aligned_cols=99 Identities=29% Similarity=0.408 Sum_probs=86.3
Q ss_pred CCCCCCCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCC-CeEEeEEeecCCcEEEeCCCcCCCeEEEEEE
Q psy7039 10 PFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTG-NWEKAVVVPAGETSCTVPGLIEGETYQFQVR 88 (516)
Q Consensus 10 ~~~~p~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~-~~~~~~~~~~~~~~~~i~~l~~~~~y~~~~~ 88 (516)
..++|++|.+|++..++++++.|+|.+|..+++.+|.+|.|+|+..+. .|..+.......+.++|.+|.++..|.|+|+
T Consensus 4 ~~~~P~~P~~l~~~~~~~~sv~l~W~~p~~~g~~~i~~Y~v~~~~~~~~~w~~~~~~~~~~~~~~v~~L~p~t~Y~frV~ 83 (110)
T 2yuw_A 4 GSSGTSPPTLLTVDSVTDTTVTMRWRPPDHIGAAGLDGYVLEYCFEGTEDWIVANKDLIDKTKFTITGLPTDAKIFVRVK 83 (110)
T ss_dssp CCCCSCCCEEEEEEEECSSCEEEEEECCSSCCSSCEEEEEEEEEETTCSSEEECCSSCCCSSEEEECSCCTTCEEEEEEE
T ss_pred CCCCCCCCCccEEEeccCCeEEEEECCCCCCCCCCccEEEEEEEECCCccceEeccccCccCEEEECCCCCCCEEEEEEE
Confidence 467899999999999999999999999977788889999999998766 8887755556788999999999999999999
Q ss_pred EecCCCCCCCCCCCcceEec
Q psy7039 89 AVNAAGPGEASKPTAPIVAK 108 (516)
Q Consensus 89 a~n~~g~~~~s~~~~~~~~~ 108 (516)
|.|..|.+.++.....++..
T Consensus 84 A~n~~G~s~~S~~~~~v~~~ 103 (110)
T 2yuw_A 84 AVNAAGASEPKYYSQPILVK 103 (110)
T ss_dssp EEETTEECCCEECSSCEECC
T ss_pred EEcCCcCCCCcCCCCCEEec
Confidence 99999999887766666554
|
| >2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.50 E-value=3e-13 Score=120.72 Aligned_cols=114 Identities=17% Similarity=0.165 Sum_probs=79.6
Q ss_pred eeeEEEccCCCCCceEEEEEEEecCCCcceeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeecccccc
Q psy7039 279 TASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITS 358 (516)
Q Consensus 279 ~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~ 358 (516)
+..|.|.+++.+|+|.|+|.+.|..+.....+.|.|...+..|.. . -
T Consensus 69 ~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~L~V~~~~~~p~i----~----------~------------------- 115 (193)
T 2if7_A 69 SYSLQLSNLKMEDTGSYRAQISTKTSAKLSSYTLRILRQLRNIQV----T----------N------------------- 115 (193)
T ss_dssp TCCEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEEECCCEEEEE----E----------E-------------------
T ss_pred CeEEEECCCCcccCceEEEEEEecCCCeEEEEEEEEEccCCCCeE----e----------c-------------------
Confidence 468999999999999999999998887666777777654332110 0 0
Q ss_pred ccccccEEEEcCC-eEEEEEEEeee-cCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecC-CceEEEEEEEcCC
Q psy7039 359 DLSIRDMTVLAGE-EFTITVPFSGR-PKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRAT-DSGSYTIQLVNTV 435 (516)
Q Consensus 359 ~~~~~~~~v~~g~-~~~l~C~~~g~-p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~-~~g~y~c~a~n~~ 435 (516)
.......|. .+.|.|.+.+. |.+.+.|++++..+.... .|.|..... + |.|.|+|.|.|..
T Consensus 116 ----~~~~~~~g~~~v~L~C~~~g~~p~p~i~W~~~g~~l~~~~-----------~l~i~~~~~-~~d~G~Y~C~a~N~~ 179 (193)
T 2if7_A 116 ----HSQLFQNMTCELHLTCSVEDADDNVSFRWEALGNTLSSQP-----------NLTVSWDPR-ISSEQDYTCIAENAV 179 (193)
T ss_dssp ----CCC---CSSEEEEEEEEEESCCTTCEEEEEETTEEEESSS-----------EEEEEECTT-TCSCCEEEEEEEETT
T ss_pred ----CceeecCCCceEEEEEEEecCCCceEEEEEeCCEEcCCCC-----------eEEEEeccC-cCCCCcEEEEEECCC
Confidence 001123455 89999999985 478999999987653221 355543333 4 8999999999999
Q ss_pred CceeEE
Q psy7039 436 GSDSAS 441 (516)
Q Consensus 436 G~~s~s 441 (516)
|..+..
T Consensus 180 g~~s~~ 185 (193)
T 2if7_A 180 SNLSFS 185 (193)
T ss_dssp EEEEEE
T ss_pred Cccccc
Confidence 987554
|
| >3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L | Back alignment and structure |
|---|
Probab=99.50 E-value=7.1e-13 Score=125.45 Aligned_cols=190 Identities=13% Similarity=0.071 Sum_probs=118.1
Q ss_pred ccccCCceEEEEEEEEccCCCCCceecccccc-------------------cceEEEEEecceeeEEEccCCCCCceEEE
Q psy7039 236 NNVHEGKAYEYRVSAVNAAGTEKPKISLDALI-------------------GKRIKEFVTSTTASLNIKNSVRKDSGIYK 296 (516)
Q Consensus 236 ~~l~~g~~~~~~~~~~~~~g~p~p~i~W~~~~-------------------~~~~~~~~~~~~~~l~i~~l~~~d~g~y~ 296 (516)
..+.+|+.+.|.|.+ .+.+.+.+.|.+.. ..++..........|.|.+++.+|+|.|+
T Consensus 22 ~~v~~G~~v~L~C~~---~~~p~~~i~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~ 98 (276)
T 3auv_A 22 LSASVGDRVTITCRA---SQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGSGTDFTLTISSLQPEDFATYY 98 (276)
T ss_dssp EECCTTCCEEEEEEE---SSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred EEEcCCCCEEEEeEc---CCCCCCcEEEEEECCCCCCEEEEEEcCccCCCCCCCEEEeccCCeEEEEEccCChhhCEEEE
Confidence 357789999999998 77788999996521 12333333445668999999999999999
Q ss_pred EEEEecCCC-cceeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEE
Q psy7039 297 IEAKNDYGI-DMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTI 375 (516)
Q Consensus 297 c~a~n~~g~-~~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l 375 (516)
|.+.|..+. ......|.|...+......+. ....-.+.+ ..+....+.+|+.+.|
T Consensus 99 C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~--~~~~p~~~~----------------------~~p~~~~v~~G~~v~L 154 (276)
T 3auv_A 99 CQQHYTTPPTFGCGTKVEIKGGGGGSIEGRS--GGGGSEVQL----------------------VESGGGLVQPGGSLRL 154 (276)
T ss_dssp EEECSSSSCCCCCCEEEEC-------------------CCEE----------------------EEECCEEECTTCCEEE
T ss_pred EEEecCCcccccCCEEEEEecCCCccccccc--cccCcceEE----------------------ECCCceEecCCCeEEE
Confidence 999987654 233456666654321000000 000000000 1124567889999999
Q ss_pred EEEEeeec--CCceEEEECC--eec-----------------CCCCceEEEEc--CCeEEEEEcCceecCCceEEEEEEE
Q psy7039 376 TVPFSGRP--KPTPIWTVNG--DEV-----------------SPDGRIKFETS--ENQTIYRNKSAKRATDSGSYTIQLV 432 (516)
Q Consensus 376 ~C~~~g~p--~~~i~W~~~~--~~l-----------------~~~~~~~~~~~--~~~~~l~i~~~~~~~~~g~y~c~a~ 432 (516)
.|.+.+.+ .+.+.|++++ ... ....++.+... .....|.|.++.. .|+|.|+|.|.
T Consensus 155 ~C~~~g~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~-~DsG~Y~C~a~ 233 (276)
T 3auv_A 155 SCAASGFTISDYWIHWVRQAPGKCLEWVAGITPAGGYTYYADSVKGRFTISADTSKNTAYLQMNSLRA-EDTAVYYCARF 233 (276)
T ss_dssp EEEEESSCGGGSEEEEEEECTTCCEEEEEEECGGGCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCG-GGCEEEEEEEE
T ss_pred EEEecCccCCCCEEEEEEcCCCCCcEEEEEEeccCCccccccccCCcEEEEecCCCcEEEEEECCCCh-hHCEEEEEEEE
Confidence 99999876 4799999963 111 12346665542 4556899999999 99999999999
Q ss_pred cCC---Cc--eeEEEEEEEecCCCCC
Q psy7039 433 NTV---GS--DSASCKVYVVDKPSPP 453 (516)
Q Consensus 433 n~~---G~--~s~s~~l~v~~~p~~P 453 (516)
|.. +. -.....|+|...+..+
T Consensus 234 n~~~~~~~~~fg~gt~l~V~~~~~~~ 259 (276)
T 3auv_A 234 VFFLPYAMDYWGQGTLVTVSSASAAA 259 (276)
T ss_dssp CSSTTCSCCCBCCCEEEEEC------
T ss_pred cCcCCcCceEECCCEEEEEccccccc
Confidence 983 22 2233677776544443
|
| >3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.2e-12 Score=122.46 Aligned_cols=128 Identities=16% Similarity=0.167 Sum_probs=89.3
Q ss_pred ceeeEEEccCCCCCceEEEEEEEec------------CCCcceeEEEEEecCCCCCCC--------CceeeeccCCeeEE
Q psy7039 278 TTASLNIKNSVRKDSGIYKIEAKND------------YGIDMADIEVVVVSKPGPPTG--------PIDYTTVTPESVSM 337 (516)
Q Consensus 278 ~~~~l~i~~l~~~d~g~y~c~a~n~------------~g~~~~~~~l~v~~~p~~p~~--------p~~~~~~~~~~~~l 337 (516)
....|.|.+++.+|+|.|.|.+.|. .+.......|.|...+..... +..+
T Consensus 83 ~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~---------- 152 (256)
T 3juy_B 83 NTAYMELRSLRSADTAVYYCARVGEWGWDDSPYDNYYMDVWGKGTTVIVSSGGGGSGGGGSGGGGSEIVL---------- 152 (256)
T ss_dssp TEEEEEECSCCGGGCEEEEEEECCCCCTTCCTTTTCSCCEECCCEEEEECSCC----------CCCCCCE----------
T ss_pred CEEEEEECCCCcccCEEEEEeEEeccccccccccccceeEECCceEEeecCCcccccccccCCCcceeEE----------
Confidence 3567999999999999999999986 222333456666554321000 0000
Q ss_pred EecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeeecC-CceEEEEC--CeecC------------CCCce
Q psy7039 338 SWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPK-PTPIWTVN--GDEVS------------PDGRI 402 (516)
Q Consensus 338 ~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~-~~i~W~~~--~~~l~------------~~~~~ 402 (516)
...+....+.+|+.+.|.|.+.+.+. +.+.|++. +..+. ...++
T Consensus 153 ---------------------~~~~~~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~ 211 (256)
T 3juy_B 153 ---------------------TQAPGTLSLSPGERATFSCRSSHSIRSRRVAWYQHKPGQAPRLVIHGVSNRASGISDRF 211 (256)
T ss_dssp ---------------------EEECSEEEECTTSCEEEEEEESSCCTTCCEEEEEECTTSCCEEEEETTTEECTTCCTTE
T ss_pred ---------------------EecCCeEEEeCCCCEEEEEEECCCcCCeeEEEEEECCCCCcEEEEEecCccCCccCCcE
Confidence 01235567889999999999998876 89999883 22111 23566
Q ss_pred EEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCc
Q psy7039 403 KFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGS 437 (516)
Q Consensus 403 ~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~ 437 (516)
.........+|.|.++.. .|+|.|.|.|.|..+.
T Consensus 212 ~~~~~~~~~~L~I~~v~~-~DsG~Y~C~~~~~~~~ 245 (256)
T 3juy_B 212 SGSGSGTDFTLTITRVEP-EDFALYYCQVYGASSY 245 (256)
T ss_dssp EEEEETTEEEEEESSCCG-GGCSEEEEEECCSSCC
T ss_pred EEEccCCEEEEEECCCCH-hHCEEEEEEEeeCCCc
Confidence 666666777899999999 9999999999986543
|
| >3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L* | Back alignment and structure |
|---|
Probab=99.50 E-value=9e-14 Score=126.03 Aligned_cols=158 Identities=12% Similarity=0.052 Sum_probs=107.6
Q ss_pred ceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeC--Ceeec------------cCCceE
Q psy7039 123 DVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSIN--GQVCQ------------IGGRAD 188 (516)
Q Consensus 123 ~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~--~~~~~------------~~~~~~ 188 (516)
.+.+.+|+.+.|.|.+. +.+.+.+.|++. +.... ...|+.
T Consensus 9 ~~~v~~G~~v~L~C~~~--------------------------~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~ 62 (213)
T 3mj8_L 9 LVSVALGQKATITCSGD--------------------------KLSDVYVHWYQQKAGQAPVLVIYEDNRRPSGIPDHFS 62 (213)
T ss_dssp EEEEETTSCEEEEEECS--------------------------STTTSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEE
T ss_pred cEEEeCCCCEEEEEEcC--------------------------CCCCceEEEEEECCCCCcEEEEEECCccCCCccCcEE
Confidence 68899999999999999 889999999882 21111 234666
Q ss_pred EeecCCeeEEEeccCCCCCCeeEEEEEEcCCCc---e--EEEEEeec-----eeee----eccccCCceEEEEEEEEccC
Q psy7039 189 VQTTKSETVLDIPFCSRSDTGHYSLTLENNLGT---A--TASAHVTG-----TEFT----DNNVHEGKAYEYRVSAVNAA 254 (516)
Q Consensus 189 ~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~---~--~~~~~~~~-----~~~~----~~~l~~g~~~~~~~~~~~~~ 254 (516)
+.......+|.|.+++.+|+|.|.|.+.+..+. . ...+.+.. ..+. ...+.+|..+.+.|.+ .
T Consensus 63 ~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~l~C~~---~ 139 (213)
T 3mj8_L 63 GSNSGNMATLTISKAQAGDEADYYCQSWDGTNSAWVFGSGTKVTVLGQPNAAPSVTLFPPSSEELKTNQATLVCMI---N 139 (213)
T ss_dssp EEEETTEEEEEESSCCGGGCEEEEEEEEETTTTEEEEBCCEEEEEECSCCBCCEEEEECCCHHHHTTTEEEEEEEE---E
T ss_pred EEecCCEEEEEECCCChhhCEEEEEEeccCCcceeEEcCceEEEEeCCCCCCCeEEccCCCcccccCCcEEEEEEe---e
Confidence 666677889999999999999999999998772 1 12222221 1111 1123369999999998 4
Q ss_pred CC-CC-ceecccccccce---E----EEEE---ecceeeEEEccCCCCCceEEEEEEEecCCCccee
Q psy7039 255 GT-EK-PKISLDALIGKR---I----KEFV---TSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMAD 309 (516)
Q Consensus 255 g~-p~-p~i~W~~~~~~~---~----~~~~---~~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~~ 309 (516)
|. |+ +.+.|.+..... . .... ......|.|.++..+|.|.|+|.|.|..+....+
T Consensus 140 g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~ 206 (213)
T 3mj8_L 140 GFYPADVAVTWEADGTPITQGVKTTQPSKSDSKYMATSYLTMTADAWKSRNTFICKVTHGGNTVEKS 206 (213)
T ss_dssp EEBSSCCEEEEEETTEEECTTEEECCCEEETTEEEEEEEEEEESHHHHSCSCEEEEEEETTEEEEEE
T ss_pred ceeCCCeEEEEEcCCcccCCCcccCCcCccCCcEEEEEEEEEeHHHcCCCCEEEEEEEECCccEEee
Confidence 53 33 489996521100 0 0000 0113458899999999999999999987655443
|
| >1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A | Back alignment and structure |
|---|
Probab=99.50 E-value=3.8e-14 Score=125.78 Aligned_cols=136 Identities=14% Similarity=0.075 Sum_probs=100.6
Q ss_pred EecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEeecCCeeEEEecc-CC
Q psy7039 126 IKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPF-CS 204 (516)
Q Consensus 126 v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~-~~ 204 (516)
+.+|+++.|.|.+. + +. .+.|++++..+... ...+|.|.+ ++
T Consensus 11 ~~~G~~v~L~C~~~--------------------------~-~~-~i~W~k~g~~l~~~---------~~~~L~I~~~~~ 53 (186)
T 1jbj_A 11 SISGTSVELTCPLD--------------------------S-DE-NLKWEKNGQELPQK---------HDKHLVLQDFSE 53 (186)
T ss_dssp EEETTEEEEECSSC--------------------------C-CT-TCEEEETTEEECSC---------CCSEEEEESCCT
T ss_pred EeCCcEEEEEEeCC--------------------------C-CC-ceEEEECCEECCCC---------CCCEEEECCCCc
Confidence 47899999999998 7 33 49999999988643 234799999 99
Q ss_pred CCCCeeEEEEEEcCCCceEEEEEeeceee--------------------------------eeccccCCceEEEEEEEEc
Q psy7039 205 RSDTGHYSLTLENNLGTATASAHVTGTEF--------------------------------TDNNVHEGKAYEYRVSAVN 252 (516)
Q Consensus 205 ~~d~g~Y~c~~~~~~g~~~~~~~~~~~~~--------------------------------~~~~l~~g~~~~~~~~~~~ 252 (516)
.+|+|.|+|.+.|..|.......+..... ....+..|..+.|.|.+
T Consensus 54 ~~D~G~Y~C~a~n~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~l~C~~-- 131 (186)
T 1jbj_A 54 VEDSGYYVCYTPASNKNTYLYLKARVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGSRGDGSVLLTCGL-- 131 (186)
T ss_dssp TTSCEEEEEECSSCCCCCCEEECCCCCSCCCCCCCCCCCCCCSCCSSSTTCCSCCCCSSCCEECCCSSSCEEEEECSS--
T ss_pred cccCEEEEEEEEeCCCcEEEEEEEEEecccccccccccccccccCCccccccccccccccccceecCCCCeEEEEeeC--
Confidence 99999999999998887444433211100 01234489999999976
Q ss_pred cCCCCCceecccccccceEEEEEecceeeEEEccCCCCCceEEEEEEEecCCCc
Q psy7039 253 AAGTEKPKISLDALIGKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGID 306 (516)
Q Consensus 253 ~~g~p~p~i~W~~~~~~~~~~~~~~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~ 306 (516)
|.|.+.|.+.... +. ........|.|.++..+|+|.|+|.|.|..|..
T Consensus 132 ----p~p~i~W~k~g~~-i~-~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~ 179 (186)
T 1jbj_A 132 ----TDKTIKWLKDGSI-IS-PLNATKNTWNLGNNAKDPRGTYQCQGAKETSNP 179 (186)
T ss_dssp ----SCSCEEEEETTEE-CC-CSSCCSSCCEEEETTSCCEEEEEEEESSCEEEE
T ss_pred ----CCCeEEEEECCEE-Cc-ccCCCcceEEECCCCcCcCEEEEEEEEcCcCCc
Confidence 7899999762211 10 011256789999999999999999999998765
|
| >1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.50 E-value=3.3e-13 Score=127.69 Aligned_cols=251 Identities=11% Similarity=0.063 Sum_probs=91.0
Q ss_pred ccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeC--CeeeccCCceEEeecCCeeEE
Q psy7039 121 LNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSIN--GQVCQIGGRADVQTTKSETVL 198 (516)
Q Consensus 121 ~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~--~~~~~~~~~~~~~~~~~~~~l 198 (516)
+..+.|.+|+++.|.|... ...+..+.|... ...+. ........|
T Consensus 6 P~~~~V~~G~sv~l~Cs~~--------------------------c~~p~~~~~~t~l~~~~~~-------~~g~~~~~~ 52 (291)
T 1mq8_A 6 PSKVILPRGGSVLVTCSTS--------------------------CDQPKLLGIETPLPKKELL-------LPGNNRKVY 52 (291)
T ss_dssp CSEEEECTTCEEEEEEEEC--------------------------CSSCSEEEEECSSCCCCCC-------CSCSSEEEE
T ss_pred CCccEEcCCCeEEEEEeCC--------------------------CCCCccceEEecCCCcccc-------cCCCceEEE
Confidence 3567899999999999987 433334788642 11110 001223468
Q ss_pred EeccCCCCCCeeEEEEEEcCCCceEEEEEeeceee--------eeccccCCceEEEEEEEEccCCCCCc--eeccccccc
Q psy7039 199 DIPFCSRSDTGHYSLTLENNLGTATASAHVTGTEF--------TDNNVHEGKAYEYRVSAVNAAGTEKP--KISLDALIG 268 (516)
Q Consensus 199 ~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~~~~~~--------~~~~l~~g~~~~~~~~~~~~~g~p~p--~i~W~~~~~ 268 (516)
.|.+++.+ |.|.|.+..........+.+.+..+ ....+.+|+.+++.|.+. .+.|.. .++|.+...
T Consensus 53 ~l~~v~~~--~~y~C~~~~~~~~~~~~v~l~V~~~P~~v~I~~~~~~~~~G~~~~LtC~v~--g~~P~~~l~itW~kg~~ 128 (291)
T 1mq8_A 53 ELSNVQED--SQPMCYSNCPDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVE--GGAPRANLTVVLLRGEK 128 (291)
T ss_dssp EEESCCSC--CCCEEEEECSSCEEEEECEEEECBCCSCCCBCCCCSBCCSSCCCEEEEEEC--CCBSTTTEEEEEESSSS
T ss_pred EEEecccC--CeEEEEEEcCCccEEEEEEEEEecCCCCCEEecCCccccCCCCEEEEEEec--CccCCCCcEEEEEECCE
Confidence 88898854 4699999644323333333222211 123478899999999983 334443 589976332
Q ss_pred ceEEEEE--ecceeeEEEccCCCCCceEEEEEEEecCCC--------cceeEEEEEecCCCCCCCCceeeeccCCeeEEE
Q psy7039 269 KRIKEFV--TSTTASLNIKNSVRKDSGIYKIEAKNDYGI--------DMADIEVVVVSKPGPPTGPIDYTTVTPESVSMS 338 (516)
Q Consensus 269 ~~~~~~~--~~~~~~l~i~~l~~~d~g~y~c~a~n~~g~--------~~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~ 338 (516)
.-..... ......|.+.....++.+.|+|.|.|..+. .+....+.|...|..... +
T Consensus 129 ~l~~~~~~~~~~~~~l~~~~~~~D~g~~~~C~A~~~l~~~g~~l~~~~s~~~~L~V~~~P~~~~~-~------------- 194 (291)
T 1mq8_A 129 ELKREPAVGEPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQ-L------------- 194 (291)
T ss_dssp EEEEEECCBTTEEEEEECCCSSSCSSCEEEEEEEEECGGGTSCEEEECCCCEECBC------------------------
T ss_pred EeecccCCCCCceEEEEeeeeeccCCceEEEEEEecCCccCCccccccccceEEEEEecCCCCce-e-------------
Confidence 1111111 112335666666666667999999987553 233455666555433111 0
Q ss_pred ecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeeecCC---ceEEEECCeecCCCCceEEEEcCCeEEEEE
Q psy7039 339 WKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKP---TPIWTVNGDEVSPDGRIKFETSENQTIYRN 415 (516)
Q Consensus 339 W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~---~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i 415 (516)
.. ...+.+|+.+.|.|.++|.+++ .+.|.++|..+.... ...++ .+.+
T Consensus 195 ---------------------~~--p~~l~eG~~v~l~C~~~g~~P~~~~~v~w~~~g~~l~~~~----~~~g~--~~~~ 245 (291)
T 1mq8_A 195 ---------------------VS--PRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTV----TYGND--SFSA 245 (291)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ---------------------cC--CcCccCCCeEEEEEEcCCCCCCcccEEEEEECCEecCcee----eecCC--eEEE
Confidence 00 1146789999999999998665 599999998775321 11122 2333
Q ss_pred cCc---ee-cCCceEEEEEEEcCCCceeEEEEEEEecCCC
Q psy7039 416 KSA---KR-ATDSGSYTIQLVNTVGSDSASCKVYVVDKPS 451 (516)
Q Consensus 416 ~~~---~~-~~~~g~y~c~a~n~~G~~s~s~~l~v~~~p~ 451 (516)
..+ .. .++.|.|.|.|.|..........|+|..-|.
T Consensus 246 ~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~l~v~~~~~ 285 (291)
T 1mq8_A 246 KASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPA 285 (291)
T ss_dssp ----------------------------------------
T ss_pred EEecceeEcCCCCEEEEEEEEeCCcceEEEEEEEEEcCCC
Confidence 222 23 0346777888887655566677788876544
|
| >3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A | Back alignment and structure |
|---|
Probab=99.49 E-value=6.9e-13 Score=123.78 Aligned_cols=174 Identities=13% Similarity=0.074 Sum_probs=113.2
Q ss_pred cccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCc--CceeeEEeeC--Ceee--------------
Q psy7039 120 TLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSE--PFLNHGWSIN--GQVC-------------- 181 (516)
Q Consensus 120 ~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--p~~~i~W~~~--~~~~-------------- 181 (516)
.+..+.+.+|+++.|.|.+. +. +.+.+.|++. +..+
T Consensus 7 ~p~~~~v~~G~~v~L~C~~~--------------------------g~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~ 60 (253)
T 3uzq_A 7 QSGAELVKPGASVRLSCTAS--------------------------GFNIKDTYMSWVKQRPEQGLEWIGRIDPANGDTK 60 (253)
T ss_dssp ECCCEEECTTCCEEEEEEEC--------------------------SSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEE
T ss_pred cCCCeeecCCCcEEEEEEee--------------------------CCcccCceEEEEEeCCCCCCEEEEEEccCCCcce
Confidence 44567899999999999988 43 2556667661 1111
Q ss_pred ---ccCCceEEeec--CCeeEEEeccCCCCCCeeEEEEEEcCCCceE---EEEEeec----------------eee----
Q psy7039 182 ---QIGGRADVQTT--KSETVLDIPFCSRSDTGHYSLTLENNLGTAT---ASAHVTG----------------TEF---- 233 (516)
Q Consensus 182 ---~~~~~~~~~~~--~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~---~~~~~~~----------------~~~---- 233 (516)
....|+.+... ....+|.|.+++.+|+|.|.|.+.+..+... ..+.+.. ..+
T Consensus 61 ~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~v~~~p 140 (253)
T 3uzq_A 61 YDPKFQGKATITADTSSNTAYLHLSSLTSGDTAVYYCSRGWEGFAYWGQGTLVTVSAGGGGSGGGGSGGGGSELVMTQTP 140 (253)
T ss_dssp ECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECSSSCCEECCCEEEEECSSSCCCCC---------CCEEEEC
T ss_pred eCCcCCCcEEEEeecCCCeEEEEeCCCCcccCEEEEEEEeeCCccEECCCcEEEEecCCccccccccCCCcccceEECcC
Confidence 11246665533 3466799999999999999999998554431 1222221 111
Q ss_pred eeccccCCceEEEEEEEEccCCCCCc----eecccccc-c------------------ceEEEEEecceeeEEEccCCCC
Q psy7039 234 TDNNVHEGKAYEYRVSAVNAAGTEKP----KISLDALI-G------------------KRIKEFVTSTTASLNIKNSVRK 290 (516)
Q Consensus 234 ~~~~l~~g~~~~~~~~~~~~~g~p~p----~i~W~~~~-~------------------~~~~~~~~~~~~~l~i~~l~~~ 290 (516)
....+.+|+.+.|.|.+ .+.+.+ .+.|.+.. + .++..........|.|.+++.+
T Consensus 141 ~~~~v~~G~~v~L~C~~---~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~ 217 (253)
T 3uzq_A 141 ASLAVSLGQRATISCRA---SENVDRYGNSFMHWYQQKAGQPPKLLIYRASNLESGIPARFSGSGSRTDFTLTINPVEAD 217 (253)
T ss_dssp SEEEECTTSCEEEEEEE---SSCCEETTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGG
T ss_pred CeEEEeCCCCEEEEEEe---cCccccCCCcEEEEEEECCCCCCEEEEEEccccCCccCCceEEeCCCCEEEEEECCCCHH
Confidence 12457789999999998 677776 89996521 1 2233333455668999999999
Q ss_pred CceEEEEEEEecCCCcc-eeEEEEEecCCCCCC
Q psy7039 291 DSGIYKIEAKNDYGIDM-ADIEVVVVSKPGPPT 322 (516)
Q Consensus 291 d~g~y~c~a~n~~g~~~-~~~~l~v~~~p~~p~ 322 (516)
|+|.|+|.|.|..+..- .-..|.|...+.++.
T Consensus 218 DsG~Y~C~~~n~~~~~fg~gt~l~v~~~~~~~~ 250 (253)
T 3uzq_A 218 DVATYFCQRSNEVPWTFGGGTKLEIKRPLEHHH 250 (253)
T ss_dssp GCEEEEEEECSSSSCCBCCCEEEEECCC-----
T ss_pred HCEEEEEEEccCCCcEECCCEEEEEcCCCCCcc
Confidence 99999999998754432 245677776665543
|
| >1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L* | Back alignment and structure |
|---|
Probab=99.49 E-value=1.1e-13 Score=125.25 Aligned_cols=167 Identities=15% Similarity=0.184 Sum_probs=111.0
Q ss_pred eccccCCceEEEEEEEEccCCCCCceecccccc-------------------cceEEEEEecceeeEEEccCCCCCceEE
Q psy7039 235 DNNVHEGKAYEYRVSAVNAAGTEKPKISLDALI-------------------GKRIKEFVTSTTASLNIKNSVRKDSGIY 295 (516)
Q Consensus 235 ~~~l~~g~~~~~~~~~~~~~g~p~p~i~W~~~~-------------------~~~~~~~~~~~~~~l~i~~l~~~d~g~y 295 (516)
...+.+|+.+.|.|.+ .|.+.+.+.|.+.. ..++..........|.|.+++.+|+|.|
T Consensus 9 ~~~v~~G~~v~L~C~~---~~~~~~~v~W~~~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y 85 (210)
T 1lk3_L 9 ALTVSPGEKLTISCKA---SESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGSGTDFTLTIDPVEADDTAIY 85 (210)
T ss_dssp EEEECTTSCEEEEEEE---SSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEE
T ss_pred cEEEcCCCCEEEEeeC---CCccCCCEEEEEECCCCCeEEEEEccccccCCccccEEEEecCCEEEEEECCCCHHHCeEE
Confidence 3456789999999998 77788899995521 1233333345566999999999999999
Q ss_pred EEEEEecCCCcc-eeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEE
Q psy7039 296 KIEAKNDYGIDM-ADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFT 374 (516)
Q Consensus 296 ~c~a~n~~g~~~-~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~ 374 (516)
+|.|.|..+... ....+.|...+.+|. +.+. .....+..|+.+.
T Consensus 86 ~C~~~~~~~~~~~~~~~l~V~~~~~~P~--v~~~---------------------------------~~~~~~~~g~~v~ 130 (210)
T 1lk3_L 86 FCQQSWNGPLTFGAGTKLELKRADAAPT--VSIF---------------------------------PPSTEQLATGGAS 130 (210)
T ss_dssp EEEECSSSSCEECCCEEEEECCCCBCCE--EEEE---------------------------------CCCHHHHTTTEEE
T ss_pred EEEEEcCCCceeCCCEEEEEcCCCcCCe--EEEE---------------------------------CCchhhccCCcEE
Confidence 999998876432 234566654322221 1000 0001123688999
Q ss_pred EEEEEeee-cCC-ceEEEECCeecCCC-Cc-eEEEEcCC-----eEEEEEcCceecCCceEEEEEEEcCCCceeE
Q psy7039 375 ITVPFSGR-PKP-TPIWTVNGDEVSPD-GR-IKFETSEN-----QTIYRNKSAKRATDSGSYTIQLVNTVGSDSA 440 (516)
Q Consensus 375 l~C~~~g~-p~~-~i~W~~~~~~l~~~-~~-~~~~~~~~-----~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~ 440 (516)
|.|.+.|. |.+ .+.|+++|..+... .. .......+ .+.|.|..+.. .|.|.|+|.|.|.......
T Consensus 131 l~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~-~d~G~Y~C~a~n~~~~~~~ 204 (210)
T 1lk3_L 131 VVCLMNNFYPRDISVKWKIDGTERRDGVLDSVTDQDSKDSTYSMSSTLSLTKADY-ESHNLYTCEVVHKTSSSPV 204 (210)
T ss_dssp EEEEEEEEBSSCCEEEEEETTEECCTTEEEEECCCCTTTCCEEEEEEEEEEHHHH-HTCCEEEEEEECTTCSSCE
T ss_pred EEEEEEeEeCCceEEEEEeCCccCCCCceEccCCccCCCCCEEEEEEEEEChHHh-ccCCcEEEEEEecCCCCee
Confidence 99999985 443 89999999877543 10 00111111 13799999999 9999999999998765443
|
| >2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A | Back alignment and structure |
|---|
Probab=99.49 E-value=1.9e-13 Score=121.72 Aligned_cols=131 Identities=21% Similarity=0.335 Sum_probs=106.3
Q ss_pred CCcEEEeCCCcCCCeEEEEEEEecCCCCCCCCCCCcceEeccCCCCCccccCcccceEEecCCeEEEEEeeeeccccccC
Q psy7039 68 GETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKS 147 (516)
Q Consensus 68 ~~~~~~i~~l~~~~~y~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~ 147 (516)
....|.|.+++..|.|.|+|.|.|..|.... ...+.+.....+|.+. ..+....+.+|+.+.|.|.+.
T Consensus 61 ~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~---~~~l~v~~~~~~p~~~-~~~~~~~~~~g~~~~l~C~~~-------- 128 (194)
T 2a38_A 61 GRAKLTIPAVTKANSGRYSLKATNGSGQATS---TAELLVKAETAPPNFV-QRLQSMTVRQGSQVRLQVRVT-------- 128 (194)
T ss_dssp TEEEEEESSCCGGGCEEEEEEEEETTEEEEE---EEEEEEECCCEEEEEE-ECCCCEEECTTEEEEEEEEEE--------
T ss_pred CEEEEEECCCCcccCEEEEEEEEcCCceEeE---EEEEEEccCCCCCEEE-eCCccEEEcCCCEEEEEEEEE--------
Confidence 4568999999999999999999987765321 2233333333456655 455678899999999999999
Q ss_pred ccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEE
Q psy7039 148 PLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAH 227 (516)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~ 227 (516)
+.|.+.+.|++++..+....++.+...+...+|.|.+++.+|+|.|+|.+.|..|.......
T Consensus 129 ------------------g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~ 190 (194)
T 2a38_A 129 ------------------GIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGRATSTAE 190 (194)
T ss_dssp ------------------EESCCEEEEEETTEECCCSSSEEEEEETTEEEEEEEEECGGGCEEEEEEEEETTEEEEEEEE
T ss_pred ------------------EecCCeEEEEECCEECCCCCcEEEEEcCCEEEEEECCCChhcCeEEEEEEEeCCCceEEEEE
Confidence 89999999999999998888888877777789999999999999999999999988766554
Q ss_pred e
Q psy7039 228 V 228 (516)
Q Consensus 228 ~ 228 (516)
+
T Consensus 191 l 191 (194)
T 2a38_A 191 L 191 (194)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 | Back alignment and structure |
|---|
Probab=99.49 E-value=3.4e-13 Score=132.05 Aligned_cols=205 Identities=8% Similarity=0.080 Sum_probs=121.4
Q ss_pred CCcEEEeCCCcCCCeEEEEEEEecCCCCCCCCCCCcceEec-cCCCCCccccCcccceEEecCCeEEEEEeeeecccccc
Q psy7039 68 GETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAK-PKNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTK 146 (516)
Q Consensus 68 ~~~~~~i~~l~~~~~y~~~~~a~n~~g~~~~s~~~~~~~~~-~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~ 146 (516)
...+|.|.+++..|.|.|+|.|.|..+.. .. ...+.+. ....+|.+.... ....+.+|+.+.|.|.+.
T Consensus 77 ~~~~L~I~~v~~~D~G~Y~C~~~n~~~~~--~~-~~~l~V~~~~~~~P~i~~~~-~~~~~~~g~~v~L~C~~~------- 145 (344)
T 1za6_B 77 STAYVELSSLRSEDTAVYFCTRSLNMAYW--GQ-GTLVTVSSASTKGPSVFPLA-PSSKSTSGGTAALGCLVK------- 145 (344)
T ss_dssp TEEEEEECSCCGGGCEEEEEEETTTTCEE--CC-CEEEEECSSCCBCCEEEEEC-CSCTTTSSSEEEEEEEEE-------
T ss_pred CEEEEEECCCCcccCEEEEEEEecCccee--cC-cEEEEEecCCCCCCeEEEcc-ccccccCCCcEEEEEEEe-------
Confidence 45689999999999999999998843221 11 1223332 222455544221 122357899999999999
Q ss_pred CccccccccccCccceeecCc-Cc-eeeEEeeCCeeeccCCce-EEeecC---CeeEEEeccCCCCCCeeEEEEEEcCCC
Q psy7039 147 SPLRALGVRANSTKGWVKLSE-PF-LNHGWSINGQVCQIGGRA-DVQTTK---SETVLDIPFCSRSDTGHYSLTLENNLG 220 (516)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~-p~-~~i~W~~~~~~~~~~~~~-~~~~~~---~~~~l~i~~~~~~d~g~Y~c~~~~~~g 220 (516)
|. |. +.+.|++++..+...... .....+ ..+.|.|.++..+| |.|+|.+.|..+
T Consensus 146 -------------------g~~P~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~~ 205 (344)
T 1za6_B 146 -------------------DYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPS 205 (344)
T ss_dssp -------------------EEBSSCCCEEETTTTBCTTEEECCCEECTTSCEEEEEEEEEETTHHHH-BCEEEEEEEGGG
T ss_pred -------------------eEECCCeEEEEecCCccCceeECCCeECCCCCEEEEEEEEEcHHHcCC-CcEEEEEEeCCC
Confidence 65 54 799999988753211000 011111 12479999998888 999999999887
Q ss_pred ceEEEEEee---------------------------ceeeee----ccccCCceEEEEEEEEccCCC-C-Cceecccccc
Q psy7039 221 TATASAHVT---------------------------GTEFTD----NNVHEGKAYEYRVSAVNAAGT-E-KPKISLDALI 267 (516)
Q Consensus 221 ~~~~~~~~~---------------------------~~~~~~----~~l~~g~~~~~~~~~~~~~g~-p-~p~i~W~~~~ 267 (516)
.......+. ...+.. .....|..+.+.|.+ .|. | .+.+.|.+..
T Consensus 206 ~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~~~~P~v~~~~~~~~~~~~~~~~L~C~~---~g~~P~~~~v~W~k~g 282 (344)
T 1za6_B 206 NTKVDKKVEPKSCDKTHTCPPCGGGSSGGGSGGQPREPQVYTLPPSRDELTKNQVSLTCLV---KGFYPSDIAVEWESNG 282 (344)
T ss_dssp TEEEEEEECCCCC--------------------CCBCCEEEEECCCGGGGGSSSEEEEEEE---EEEBSSCCEEEEESSS
T ss_pred CccceEeecccccccccccCCCCCCccccccCCCCcCCEEEEeCCChHhccCCcEEEEEEE---eeEECCCeEEEEEECC
Confidence 643322111 011111 112246669999998 564 3 3688996521
Q ss_pred c---ceE--EEEEecc-----eeeEEEccCCCCCceEEEEEEEecCCCc
Q psy7039 268 G---KRI--KEFVTST-----TASLNIKNSVRKDSGIYKIEAKNDYGID 306 (516)
Q Consensus 268 ~---~~~--~~~~~~~-----~~~l~i~~l~~~d~g~y~c~a~n~~g~~ 306 (516)
. ... ....... ...|.|.....+|.|.|+|.|.|.....
T Consensus 283 ~~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~~~g~YtC~a~~~~l~~ 331 (344)
T 1za6_B 283 QPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEALHN 331 (344)
T ss_dssp SCCCSEEECCCEECTTSCEEEEEEEEECHHHHHTTCEEEEEEECTTSTT
T ss_pred eECCCcEecceEECCCCcEEEEEEEEEChHHccCCCeEEEEEEcCCCCC
Confidence 1 111 1111111 1234555555567999999999976543
|
| >4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=6.4e-13 Score=120.82 Aligned_cols=165 Identities=12% Similarity=0.095 Sum_probs=105.8
Q ss_pred ccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCce---eeEEeeCCeeecc--------------
Q psy7039 121 LNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFL---NHGWSINGQVCQI-------------- 183 (516)
Q Consensus 121 ~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~---~i~W~~~~~~~~~-------------- 183 (516)
+..+.+..|+++.|.|.+. +.+.+ .+.|++++..+..
T Consensus 8 p~~V~~~~G~~v~L~C~~~--------------------------~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~ 61 (225)
T 4fmk_A 8 LPEVRGRLGGTVELPCHLL--------------------------PPTTERVSQVTWQRLDGTVVAAFHPSFGVDFPNSQ 61 (225)
T ss_dssp CSEEEEETTSCEEECCEEC--------------------------SSCCCEEEEEEEECTTSCEEEEEETTTEEECCCTT
T ss_pred CCEEEEecCCCEEEEEEEE--------------------------CCCCCceeEEEEEECCCcceEEEecccceeecccc
Confidence 4457889999999999998 65544 4789987643321
Q ss_pred --CCceEEe-------ecCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEE---eec--e---eeeeccccCCceEEE
Q psy7039 184 --GGRADVQ-------TTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAH---VTG--T---EFTDNNVHEGKAYEY 246 (516)
Q Consensus 184 --~~~~~~~-------~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~---~~~--~---~~~~~~l~~g~~~~~ 246 (516)
..+.... ......+|.|.+++.+|+|.|.|.+.+..+....... +.. . .........+....+
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (225)
T 4fmk_A 62 FSKDRLSFVRARPETNADLRDATLAFRGLRVEDEGNYTCEFATFPNGTRRGVTWLRVIAQPENHAEAQEVTIGPQSVAVA 141 (225)
T ss_dssp SCTTTEEECCCSCSCCSSCCBCCEEECSCCGGGCEEEEEEEEEETTEEEEEEEEEEEEBCCEEEEEECCBCCSSSCEEEE
T ss_pred ccccceeeeccccccccccCcEEEEEccCCHHHCcceEEEEEeCCCcceeeeeeeeeecCCceeecccceeecceeeeee
Confidence 0111111 1233568999999999999999999987765543321 111 0 112233445666666
Q ss_pred EEEEEccCCCCCceecccccccceEEEE--Eec------ceeeEEEccCCCCCceEEEEEEEecCCCcceeEEEE
Q psy7039 247 RVSAVNAAGTEKPKISLDALIGKRIKEF--VTS------TTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVV 313 (516)
Q Consensus 247 ~~~~~~~~g~p~p~i~W~~~~~~~~~~~--~~~------~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~~~~l~ 313 (516)
.|.+. .+.|++.+.|........... ... ....|.|.++...|+|.|+|.|.|..+.......+.
T Consensus 142 ~c~~~--~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~~~~~~~~~v~ 214 (225)
T 4fmk_A 142 RCVST--GGRPPARITWISSLGGEAKDTQEPGIQAGTVTIISRYSLVPVGRADGVKVTCRVEHESFEEPILLPVT 214 (225)
T ss_dssp EEEEE--EEBSCCEEEEECSSCCEEEEEEEECSSTTCEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEE
T ss_pred eeeec--CCCCCCEEEEEECCccccCCcceEEecCCCEEEEEEEEEeeCCHHHCCEEEEEEEcCCCCeEEEEEEE
Confidence 66552 667888888865332222111 111 124699999999999999999999988765544443
|
| >1x4z_A Biregional cell adhesion molecule-related/DOWN- regulated oncogenes (CDON)binding...; fibronectin type III, FN3; NMR {Mus musculus} SCOP: b.1.2.1 | Back alignment and structure |
|---|
Probab=99.49 E-value=6.6e-13 Score=108.75 Aligned_cols=106 Identities=31% Similarity=0.551 Sum_probs=91.0
Q ss_pred CcceeccCCCCCCCCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCC--CCeEEeEEe-ecCCcEEEeCCCc
Q psy7039 2 DHSVLIKNPFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKT--GNWEKAVVV-PAGETSCTVPGLI 78 (516)
Q Consensus 2 ~~~~~~~~~~~~p~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~--~~~~~~~~~-~~~~~~~~i~~l~ 78 (516)
+..++...+.++|++|.++++..++.+++.|+|.++ .+++.+|.+|.|+|+..+ +.|..+... ....+.++|.+|.
T Consensus 6 ~~~~~~~~~~~~P~~P~~~~~~~~~~~sv~l~W~p~-~~~~~~i~~Y~v~~~~~~~~~~w~~~~~~~~~~~~~~~v~~L~ 84 (121)
T 1x4z_A 6 SGSQPDHGRLSPPEAPDRPTISTASETSVYVTWIPR-GNGGFPIQSFRVEYKKLKKVGDWILATSAIPPSRLSVEITGLE 84 (121)
T ss_dssp CCCCCCSSSCCCCCCCCCCEEEECCSSEEEEECCCC-CCTTSCCCEEEEEEEESSSCCCCEEEEEEECTTCCEEEEESCC
T ss_pred ccceeccCcCCCCccCCCCEEEEccCCEEEEEEECC-CCCCCcceEEEEEEEECCCCCceEEeecccCCCcCEEEECCCC
Confidence 345677888999999999999999999999999965 578889999999999865 488877544 5678999999999
Q ss_pred CCCeEEEEEEEecCCCCCCCCCCCcceEec
Q psy7039 79 EGETYQFQVRAVNAAGPGEASKPTAPIVAK 108 (516)
Q Consensus 79 ~~~~y~~~~~a~n~~g~~~~s~~~~~~~~~ 108 (516)
++..|.|+|+|.|..|.+.++.....++..
T Consensus 85 p~t~Y~frV~A~n~~G~s~~S~~~~~v~~~ 114 (121)
T 1x4z_A 85 KGISYKFRVRALNMLGESEPSAPSRPYVVS 114 (121)
T ss_dssp TTCEEEEEEEEEETTEECCCCCCCCCEECC
T ss_pred CCCEEEEEEEEEcCCCcCCCcCCCCCEEcC
Confidence 999999999999999999988777666553
|
| >2crm_A Fibronectin type-III domain containing protein 3A; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 | Back alignment and structure |
|---|
Probab=99.48 E-value=4.6e-13 Score=109.49 Aligned_cols=99 Identities=24% Similarity=0.457 Sum_probs=86.2
Q ss_pred CcceeccCCCCCCCCCcceEEE-eeeCCeeEEEecCCCCCCCCceeceEEEEEeCCC--CeEEeEEeecCCcEEEeCCCc
Q psy7039 2 DHSVLIKNPFDEPGKPTDLEAT-DWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTG--NWEKAVVVPAGETSCTVPGLI 78 (516)
Q Consensus 2 ~~~~~~~~~~~~p~~p~~l~~~-~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~--~~~~~~~~~~~~~~~~i~~l~ 78 (516)
|+.+.+++..+.|++|.++.+. .+++++|.|+|.+|..+++.+|.+|.|+++..+. .|..+.. ...++++|.+|+
T Consensus 6 S~~~~~~t~~~~P~~P~~~~~~~~~~~~sv~l~W~~p~~~gg~~i~~Y~v~~~~~~~~~~~~~~~~--~~~~~~~v~~L~ 83 (120)
T 2crm_A 6 SGVVEFTTCPDKPGIPVKPSVKGKIHSHSFKITWDPPKDNGGATINKYVVEMAEGSNGNKWEMIYS--GATREHLCDRLN 83 (120)
T ss_dssp CSCCSCCSCCCCCCCCCCCEEEEEEETTEEEEECCCCTTCCSSCCCEEEEEEEESSSSCCCEEEEC--SSCSEEEECSCC
T ss_pred cCCEEEEeCCCCCCCCCCCEEeeccCCCEEEEEECCCCcCCCCeeeEEEEEEccCCCCcCCEEEEe--ccccEEEECCCC
Confidence 6778888999999999999988 7889999999999977777889999999998654 7877644 468899999999
Q ss_pred CCCeEEEEEEEecCCCCCCCCCCC
Q psy7039 79 EGETYQFQVRAVNAAGPGEASKPT 102 (516)
Q Consensus 79 ~~~~y~~~~~a~n~~g~~~~s~~~ 102 (516)
++..|.|+|+|.|..|.+.++...
T Consensus 84 p~t~Y~frV~A~n~~G~s~~S~~~ 107 (120)
T 2crm_A 84 PGCFYRLRVYCISDGGQSAVSESL 107 (120)
T ss_dssp TTSCEEEEEEEEETTEECCCCCCC
T ss_pred CCCEEEEEEEEEcCCccCCCcccE
Confidence 999999999999999988876543
|
| >1wis_A KIAA1514 protein; FNIII domain, sidekick-2, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.1.2.1 | Back alignment and structure |
|---|
Probab=99.48 E-value=2.9e-13 Score=111.36 Aligned_cols=105 Identities=28% Similarity=0.442 Sum_probs=88.7
Q ss_pred CcceeccCCCCCCCCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEe----CCCCeEEeEEe--ecCCcEEEeC
Q psy7039 2 DHSVLIKNPFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKD----KTGNWEKAVVV--PAGETSCTVP 75 (516)
Q Consensus 2 ~~~~~~~~~~~~p~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~----~~~~~~~~~~~--~~~~~~~~i~ 75 (516)
+.++....+.++|++|.+|++..+++++|.|+|.+| .+++++|.+|.|+|+. ..+.|..+... ....++++|.
T Consensus 6 s~~~~~~~~~~~P~~P~~l~~~~~~~~sv~l~W~p~-~~~~~~i~~Y~v~~~~~~~~~~~~w~~~~~~~~~~~~~~~~v~ 84 (124)
T 1wis_A 6 SGTISSGVPPELPGPPTNLGISNIGPRSVTLQFRPG-YDGKTSISRWLVEAQVGVVGEGEEWLLIHQLSNEPDARSMEVP 84 (124)
T ss_dssp SCCCCSCCCCCCCCCCEEEEEESCCSSCEEEEEECC-CCCSSCCSEEEEEECBSCCSTTSCCEEEEEEESCTTCSEEEEC
T ss_pred cccccccCCCCCCccCCCCEEEEecCCEEEEEEECC-CCCCCcccEEEEEEEECCCCCCCCCeEeeeEccCCCceEEEeC
Confidence 456677788999999999999999999999999887 4788899999999987 23388776544 4678899999
Q ss_pred CCcCCCeEEEEEEEecCCCCCCCCCCCcceEe
Q psy7039 76 GLIEGETYQFQVRAVNAAGPGEASKPTAPIVA 107 (516)
Q Consensus 76 ~l~~~~~y~~~~~a~n~~g~~~~s~~~~~~~~ 107 (516)
+|+++..|.|+|+|.|..|.+.++.....+..
T Consensus 85 ~L~p~t~Y~frV~A~N~~G~s~~S~~~~~~~T 116 (124)
T 1wis_A 85 DLNPFTCYSFRMRQVNIVGTSPPSQPSRKIQT 116 (124)
T ss_dssp SCCTTSEECCCCEEECSSCBCCCCCCCCCEEC
T ss_pred CCCCCCEEEEEEEEEECCccCCCcCCccceEc
Confidence 99999999999999999999988876654443
|
| >3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D | Back alignment and structure |
|---|
Probab=99.47 E-value=6.4e-13 Score=124.22 Aligned_cols=179 Identities=17% Similarity=0.142 Sum_probs=117.7
Q ss_pred cccCCceEEEEEEEEccCCCC--Cceeccccc-cc-----------------------ceEEEEEe--cceeeEEEccCC
Q psy7039 237 NVHEGKAYEYRVSAVNAAGTE--KPKISLDAL-IG-----------------------KRIKEFVT--STTASLNIKNSV 288 (516)
Q Consensus 237 ~l~~g~~~~~~~~~~~~~g~p--~p~i~W~~~-~~-----------------------~~~~~~~~--~~~~~l~i~~l~ 288 (516)
.+.+|+.+.|.|.+ .|.+ .+.+.|.+. .+ .++.+... .....|.|.+++
T Consensus 13 ~v~~G~~v~L~C~~---~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~ 89 (256)
T 3umt_A 13 LVKPGASVKISCKT---SGYTFTEYTMHWVKQSHGKSLEWIGGINPNNGGTSYNQKFKGKAILTVDKSSSTAYLELRSLT 89 (256)
T ss_dssp EECTTCCEEEEEEE---ESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECSCC
T ss_pred EEcCCCCEEEEEEE---ecccccccEEEEEEECCCCCcEEEEEEeccCCcccccccccceEEEEEecCCCEEEEEECCCC
Confidence 47789999999997 4544 678888541 11 12222221 235569999999
Q ss_pred CCCceEEEEEEEec----CCCcceeEEEEEecCCCC---------CCCCceeeeccCCeeEEEecCCCCCCCCceeeccc
Q psy7039 289 RKDSGIYKIEAKND----YGIDMADIEVVVVSKPGP---------PTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPK 355 (516)
Q Consensus 289 ~~d~g~y~c~a~n~----~g~~~~~~~l~v~~~p~~---------p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~ 355 (516)
.+|+|.|.|.+.|. .+.......|.|...+.. ...+..+.
T Consensus 90 ~~DsG~Y~C~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~--------------------------- 142 (256)
T 3umt_A 90 SEDSAVYYCARDDRYPAWFAYWGQGTTVTVSSGGGGSGGGGSGGGGSTDIQLT--------------------------- 142 (256)
T ss_dssp GGGCEEEEEEECCSTTCCSCEECCCEEEEECC---------------CCCCEE---------------------------
T ss_pred cccCEEEEEEEccCCCccccEECCCEEEEEcCCCccccCcccCCCCccccEEE---------------------------
Confidence 99999999999987 222333456666543110 00000000
Q ss_pred cccccccccEEEEcCCeEEEEEEEeeecCCceEEEECC--eecC------------CCCceEEEEcCCeEEEEEcCceec
Q psy7039 356 ITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNG--DEVS------------PDGRIKFETSENQTIYRNKSAKRA 421 (516)
Q Consensus 356 ~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~--~~l~------------~~~~~~~~~~~~~~~l~i~~~~~~ 421 (516)
..+....+..|+.++|.|.+.+.+.+.+.|++.. ..+. ...++..........|+|.++..
T Consensus 143 ----~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~- 217 (256)
T 3umt_A 143 ----QSPSSLSASLGERVSITCRASQDIGSNLNWLQQKPDGTIKRLIYATSSLDSGVPKRFSGSRSGSDYSLTISSLES- 217 (256)
T ss_dssp ----EECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTCCEEEEEETTTEECTTSCTTEEEEEETTEEEEEECSCCG-
T ss_pred ----cCCCeEEEECCCCEEEEEEEecCCCcEEEEEEECCCCCcEEEEEeccccCCccCCCEEEecCCCEEEEEECCCCh-
Confidence 1234567889999999999999988899999842 1111 23567666666777899999999
Q ss_pred CCceEEEEEEEcCCCce-eEEEEEEEecCC
Q psy7039 422 TDSGSYTIQLVNTVGSD-SASCKVYVVDKP 450 (516)
Q Consensus 422 ~~~g~y~c~a~n~~G~~-s~s~~l~v~~~p 450 (516)
.|+|.|.|.|.|..+.. .....|.|...+
T Consensus 218 ~D~G~Y~C~~~~~~~~~fg~gt~L~V~~~~ 247 (256)
T 3umt_A 218 EDFVDYYCLQYASSPPTFGGGTKLEIKRAA 247 (256)
T ss_dssp GGCSEEEEEECSSSSCEECCCEEEEEC---
T ss_pred hHCEEEEEEEeeCCCcEECCCEEEEEECCC
Confidence 99999999999875542 334677776543
|
| >1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein, immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 1p9m_C 2arw_A | Back alignment and structure |
|---|
Probab=99.47 E-value=9.4e-13 Score=127.78 Aligned_cols=216 Identities=13% Similarity=0.152 Sum_probs=136.2
Q ss_pred cCCceEEEEEEEEccCCC-CCceecccccccc--eEEEEEecceeeEEEccCCCCCceEEEEEEEecCCCcceeEEEEEe
Q psy7039 239 HEGKAYEYRVSAVNAAGT-EKPKISLDALIGK--RIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVV 315 (516)
Q Consensus 239 ~~g~~~~~~~~~~~~~g~-p~p~i~W~~~~~~--~~~~~~~~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~~~~l~v~ 315 (516)
..|..+.|.|.+ .+. +.+.+.|...... ..........+.|.|.++...|+|.|+|. ..|.....+.|.|.
T Consensus 19 ~~G~~v~l~C~~---~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~---~~g~~~~~~~L~V~ 92 (325)
T 1n26_A 19 LPGDSVTLTCPG---VEPEDNATVHWVLRKPAAGSHPSRWAGMGRRLLLRSVQLHDSGNYSCY---RAGRPAGTVHLLVD 92 (325)
T ss_dssp CTTCCEEEECTT---SCTTCCSEEEEEEECSSSSCCCEEEEEESSEEEECSCCGGGCEEEEEE---SSSSCSCEEEEEEC
T ss_pred CCCCcEEEEeCC---CCCCCCceEEEEECCccCCccccccccccceEEecccchhhCeEeEEE---eCCEEeeeEEEEec
Confidence 589999999987 544 4789999652211 00011123357899999999999999999 36777788999998
Q ss_pred cCCCCCCCCceeee-ccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEe-eecCCceEEEECC
Q psy7039 316 SKPGPPTGPIDYTT-VTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFS-GRPKPTPIWTVNG 393 (516)
Q Consensus 316 ~~p~~p~~p~~~~~-~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~-g~p~~~i~W~~~~ 393 (516)
.+|..|. +.... ....++.++|.++.+.+ .+ .+|. +.+... +.. ...|...-
T Consensus 93 ~pP~~P~--l~c~~~~~~~~~~c~W~~~~~~~-~~-~~y~--------------------l~~~~~~~~~--~~~~~~~c 146 (325)
T 1n26_A 93 VPPEEPQ--LSCFRKSPLSNVVCEWGPRSTPS-LT-TKAV--------------------LLVRKFQNSP--AEDFQEPC 146 (325)
T ss_dssp CCCCCCC--CEEEBSSTTSCEEEEECCSSCCC-TT-CEEE--------------------EEEEEESSSS--CEEEEEEE
T ss_pred cCCCCCc--eeEEeecCCCcEEEEECCCCCCC-CC-ceEE--------------------EEEEEccCCC--CCcccccC
Confidence 8777664 55543 34679999999776532 21 2221 111100 000 00110000
Q ss_pred eecCCCCceEEEEcCCeEEEEEcCce-ecCCceEEEEEEEcCCCceeE-EEEEEE--ecCCCCCCCCcccccccC--CeE
Q psy7039 394 DEVSPDGRIKFETSENQTIYRNKSAK-RATDSGSYTIQLVNTVGSDSA-SCKVYV--VDKPSPPQGPLDVSDITP--ESC 467 (516)
Q Consensus 394 ~~l~~~~~~~~~~~~~~~~l~i~~~~-~~~~~g~y~c~a~n~~G~~s~-s~~l~v--~~~p~~P~~~l~~~~~~~--~~~ 467 (516)
.........++.|..+. . ...|.|+|.|.|..|.... ...+.+ ..+|.+| .++.+..++. .++
T Consensus 147 ---------~~~~~~~~~~c~i~~~~~~-~~~Y~f~v~A~N~~G~~~s~~~~~~~~~~v~P~pP-~~l~v~~~~~~~~sv 215 (325)
T 1n26_A 147 ---------QYSQESQKFSCQLAVPEGD-SSFYIVSMCVASSVGSKFSKTQTFQGCGILQPDPP-ANITVTAVARNPRWL 215 (325)
T ss_dssp ---------EEETTTTEEEEEECCCTTC-CCEEEEEEEEEETTEEEECCCEEEETTTCBCCCCC-EEEEEEECTTCTTCE
T ss_pred ---------CCCCCCCCEEEEECCCccc-CcEEEEEEEEEcCCCCcccCcEEEeeccccCCCCC-cceEEEEecCCCCEE
Confidence 00011223456676654 5 6889999999999998532 223222 2467877 7788877654 599
Q ss_pred EEEeeCCCCC-CCCCcceEEEEEEecCCCce
Q psy7039 468 SLSWKPPLDD-GGSPITNYVVEKYESATGVS 497 (516)
Q Consensus 468 ~l~W~~p~~~-~~~~i~~Y~v~~~~~~~~~~ 497 (516)
.|+|++|... .+..+.+|.|+|+..+...+
T Consensus 216 ~lsW~~p~~~~~~~~~~~Y~V~yr~~~~~~W 246 (325)
T 1n26_A 216 SVTWQDPHSWNSSFYRLRFELRYRAERSKTF 246 (325)
T ss_dssp EEEEECCTTCCCSSSCEEEEEEEEETTCSCC
T ss_pred EEEECCCCccCCCcEeEEEEEEEEeCCCCCC
Confidence 9999998642 45678999999999865443
|
| >3knb_A Titin; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T* | Back alignment and structure |
|---|
Probab=99.47 E-value=2.5e-13 Score=107.06 Aligned_cols=92 Identities=26% Similarity=0.447 Sum_probs=79.3
Q ss_pred CCCccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccC--CceEE
Q psy7039 112 LAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIG--GRADV 189 (516)
Q Consensus 112 ~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~--~~~~~ 189 (516)
.||.|. ..+.++.+.+|+.+.|.|.+. |.|.+.+.|++++..+... .++.+
T Consensus 4 ~PP~i~-~~p~~~~v~~G~~~~l~C~~~--------------------------g~P~p~v~W~k~g~~i~~~~~~~~~~ 56 (100)
T 3knb_A 4 IPPKIE-ALPSDISIDEGKVLTVACAFT--------------------------GEPTPEVTWSCGGRKIHSQEQGRFHI 56 (100)
T ss_dssp EEEEEC-CCCSEEEEETTSEEEEEEEEE--------------------------EESCCEEEEEETTEECCTTGGGTEEE
T ss_pred CCCEEE-eCCCcEEEeCCCeEEEEEEEE--------------------------EecCCEEEEEECceEeeeeccceeee
Confidence 467776 677889999999999999999 9999999999999998754 46777
Q ss_pred eecCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEEeec
Q psy7039 190 QTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVTG 230 (516)
Q Consensus 190 ~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~~~ 230 (516)
...+...+|.|.+++.+|+|.|+|.+.|..|.......+.+
T Consensus 57 ~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 97 (100)
T 3knb_A 57 ENTDDLTTLIIMDVQKQDGGLYTLSLGNEFGSDSATVNIHI 97 (100)
T ss_dssp EECSSEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred ecccceEEEEEcCCCccCCEEEEEEEEECCCEEEEEEEEEE
Confidence 77788889999999999999999999999998776665443
|
| >3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A | Back alignment and structure |
|---|
Probab=99.47 E-value=8.9e-13 Score=123.02 Aligned_cols=183 Identities=16% Similarity=0.084 Sum_probs=119.8
Q ss_pred ccccCCceEEEEEEEEccCCC--CCceeccccc-cc-----------------------ceEEEEEe--cceeeEEEccC
Q psy7039 236 NNVHEGKAYEYRVSAVNAAGT--EKPKISLDAL-IG-----------------------KRIKEFVT--STTASLNIKNS 287 (516)
Q Consensus 236 ~~l~~g~~~~~~~~~~~~~g~--p~p~i~W~~~-~~-----------------------~~~~~~~~--~~~~~l~i~~l 287 (516)
..+.+|+.+.|.|.+ .|. +.+.+.|.+. .+ .++.+... .....|.|.++
T Consensus 11 ~~v~~G~~v~L~C~~---~g~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v 87 (253)
T 3uzq_A 11 ELVKPGASVRLSCTA---SGFNIKDTYMSWVKQRPEQGLEWIGRIDPANGDTKYDPKFQGKATITADTSSNTAYLHLSSL 87 (253)
T ss_dssp EEECTTCCEEEEEEE---CSSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSC
T ss_pred eeecCCCcEEEEEEe---eCCcccCceEEEEEeCCCCCCEEEEEEccCCCcceeCCcCCCcEEEEeecCCCeEEEEeCCC
Confidence 346789999999997 553 3678888651 11 12222222 23556999999
Q ss_pred CCCCceEEEEEEEecCCCc-ceeEEEEEecCCCCCC--------CCceeeeccCCeeEEEecCCCCCCCCceeecccccc
Q psy7039 288 VRKDSGIYKIEAKNDYGID-MADIEVVVVSKPGPPT--------GPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITS 358 (516)
Q Consensus 288 ~~~d~g~y~c~a~n~~g~~-~~~~~l~v~~~p~~p~--------~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~ 358 (516)
+.+|+|.|+|.+.|..+.. .....+.|...+.... .+..+.
T Consensus 88 ~~~DsG~Y~C~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~v~------------------------------ 137 (253)
T 3uzq_A 88 TSGDTAVYYCSRGWEGFAYWGQGTLVTVSAGGGGSGGGGSGGGGSELVMT------------------------------ 137 (253)
T ss_dssp CGGGCEEEEEEECSSSCCEECCCEEEEECSSSCCCCC---------CCEE------------------------------
T ss_pred CcccCEEEEEEEeeCCccEECCCcEEEEecCCccccccccCCCcccceEE------------------------------
Confidence 9999999999999865543 3345666654211000 000000
Q ss_pred ccccccEEEEcCCeEEEEEEEeeecCC----ceEEEECC--eecC------------CCCceEEEEcCCeEEEEEcCcee
Q psy7039 359 DLSIRDMTVLAGEEFTITVPFSGRPKP----TPIWTVNG--DEVS------------PDGRIKFETSENQTIYRNKSAKR 420 (516)
Q Consensus 359 ~~~~~~~~v~~g~~~~l~C~~~g~p~~----~i~W~~~~--~~l~------------~~~~~~~~~~~~~~~l~i~~~~~ 420 (516)
..+....+.+|+.+.|.|.+.+.+.+ .+.|+++. ..+. ...++..........|+|.++..
T Consensus 138 -~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~ 216 (253)
T 3uzq_A 138 -QTPASLAVSLGQRATISCRASENVDRYGNSFMHWYQQKAGQPPKLLIYRASNLESGIPARFSGSGSRTDFTLTINPVEA 216 (253)
T ss_dssp -EECSEEEECTTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCG
T ss_pred -CcCCeEEEeCCCCEEEEEEecCccccCCCcEEEEEEECCCCCCEEEEEEccccCCccCCceEEeCCCCEEEEEECCCCH
Confidence 12345678899999999999988776 89999852 2111 12566666666677899999999
Q ss_pred cCCceEEEEEEEcCCCce-eEEEEEEEecCCCCC
Q psy7039 421 ATDSGSYTIQLVNTVGSD-SASCKVYVVDKPSPP 453 (516)
Q Consensus 421 ~~~~g~y~c~a~n~~G~~-s~s~~l~v~~~p~~P 453 (516)
.|+|.|.|.|.|..+.. ..-..|.|...+.+|
T Consensus 217 -~DsG~Y~C~~~n~~~~~fg~gt~l~v~~~~~~~ 249 (253)
T 3uzq_A 217 -DDVATYFCQRSNEVPWTFGGGTKLEIKRPLEHH 249 (253)
T ss_dssp -GGCEEEEEEECSSSSCCBCCCEEEEECCC----
T ss_pred -HHCEEEEEEEccCCCcEECCCEEEEEcCCCCCc
Confidence 99999999999976542 334677777655544
|
| >3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L | Back alignment and structure |
|---|
Probab=99.47 E-value=1.8e-12 Score=122.72 Aligned_cols=171 Identities=15% Similarity=0.147 Sum_probs=114.7
Q ss_pred CcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCe-----eec---------cC
Q psy7039 119 STLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQ-----VCQ---------IG 184 (516)
Q Consensus 119 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~-----~~~---------~~ 184 (516)
..+..+.+.+|+.+.|.|.+. +.|.+.+.|++++. .+. ..
T Consensus 17 ~~p~~~~v~~G~~v~L~C~~~--------------------------~~p~~~i~W~r~~~~~~~~~~~~~~~~~~~~~~ 70 (276)
T 3auv_A 17 QSPSSLSASVGDRVTITCRAS--------------------------QDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVP 70 (276)
T ss_dssp EECSEEECCTTCCEEEEEEES--------------------------SCCTTCEEEEEECTTSCCEEEEETTTEECTTCC
T ss_pred eCCCeEEEcCCCCEEEEeEcC--------------------------CCCCCcEEEEEECCCCCCEEEEEEcCccCCCCC
Confidence 456678899999999999999 77888899987431 111 13
Q ss_pred CceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCce---EEEEEeece-------------------eeeeccccCCc
Q psy7039 185 GRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTA---TASAHVTGT-------------------EFTDNNVHEGK 242 (516)
Q Consensus 185 ~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~---~~~~~~~~~-------------------~~~~~~l~~g~ 242 (516)
.|+.+...+...+|.|.+++.+|+|.|.|.+.|..+.. ...+.+... ......+.+|+
T Consensus 71 ~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~p~~~~~~p~~~~v~~G~ 150 (276)
T 3auv_A 71 SRFSGSGSGTDFTLTISSLQPEDFATYYCQQHYTTPPTFGCGTKVEIKGGGGGSIEGRSGGGGSEVQLVESGGGLVQPGG 150 (276)
T ss_dssp TTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCCCCCCEEEEC-----------------CCEEEEECCEEECTTC
T ss_pred CCEEEeccCCeEEEEEccCChhhCEEEEEEEecCCcccccCCEEEEEecCCCccccccccccCcceEEECCCceEecCCC
Confidence 46666656667799999999999999999999864431 112222110 11234567899
Q ss_pred eEEEEEEEEccCCCC--Cceecccccc-c-----------------------ceEEEEEe--cceeeEEEccCCCCCceE
Q psy7039 243 AYEYRVSAVNAAGTE--KPKISLDALI-G-----------------------KRIKEFVT--STTASLNIKNSVRKDSGI 294 (516)
Q Consensus 243 ~~~~~~~~~~~~g~p--~p~i~W~~~~-~-----------------------~~~~~~~~--~~~~~l~i~~l~~~d~g~ 294 (516)
.+.|.|.+ .|.+ .+.+.|.+.. + .++.+... .....|.|.+++.+|+|.
T Consensus 151 ~v~L~C~~---~g~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~ 227 (276)
T 3auv_A 151 SLRLSCAA---SGFTISDYWIHWVRQAPGKCLEWVAGITPAGGYTYYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAV 227 (276)
T ss_dssp CEEEEEEE---ESSCGGGSEEEEEEECTTCCEEEEEEECGGGCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGGCEE
T ss_pred eEEEEEEe---cCccCCCCEEEEEEcCCCCCcEEEEEEeccCCccccccccCCcEEEEecCCCcEEEEEECCCChhHCEE
Confidence 99999998 5555 5889997631 1 12222211 234589999999999999
Q ss_pred EEEEEEecC---CCc--ceeEEEEEecCC
Q psy7039 295 YKIEAKNDY---GID--MADIEVVVVSKP 318 (516)
Q Consensus 295 y~c~a~n~~---g~~--~~~~~l~v~~~p 318 (516)
|+|.|.|.. +.. .....|.|...+
T Consensus 228 Y~C~a~n~~~~~~~~~fg~gt~l~V~~~~ 256 (276)
T 3auv_A 228 YYCARFVFFLPYAMDYWGQGTLVTVSSAS 256 (276)
T ss_dssp EEEEEECSSTTCSCCCBCCCEEEEEC---
T ss_pred EEEEEEcCcCCcCceEECCCEEEEEcccc
Confidence 999999973 221 123566665544
|
| >1cfb_A Drosophila neuroglian; neural adhesion molecule; HET: NAG; 2.00A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1 | Back alignment and structure |
|---|
Probab=99.47 E-value=4.9e-12 Score=113.90 Aligned_cols=93 Identities=26% Similarity=0.448 Sum_probs=75.7
Q ss_pred CCCCCCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCC--CCeEEe-EEeecCCcEEEeCCCcCCCeEEEEE
Q psy7039 11 FDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKT--GNWEKA-VVVPAGETSCTVPGLIEGETYQFQV 87 (516)
Q Consensus 11 ~~~p~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~--~~~~~~-~~~~~~~~~~~i~~l~~~~~y~~~~ 87 (516)
.++|++|.+|++.. +++++.|+|.+| .+++++|.+|.|+|+... +.|... .......+.+.+ +|.+++.|.|+|
T Consensus 3 ~~~P~~P~~~~~~~-~~~sv~l~W~~p-~~~~~~i~~Y~v~~~~~~~~~~w~~~~~~~~~~~~~~~~-~L~p~t~Y~~~V 79 (205)
T 1cfb_A 3 QDVPNAPKLTGITC-QADKAEIHWEQQ-GDNRSPILHYTIQFNTSFTPASWDAAYEKVPNTDSSFVV-QMSPWANYTFRV 79 (205)
T ss_dssp CCCCCCCEEEEEEE-CSSEEEEEEECC-CCTTSCCCEEEEEEEESSSTTCCEEEEEEEETTCSEEEE-ECCSSEEEEEEE
T ss_pred ccCCCCCCCcEEEe-cCCEEEEEEECc-ccCCCceEEEEEEEecCCCCCCceeeeeccCCCceEEEE-eCCCCCEEEEEE
Confidence 57899999999999 999999999998 467788999999998753 478644 344456778888 999999999999
Q ss_pred EEecCCCCCCCCCCCcceE
Q psy7039 88 RAVNAAGPGEASKPTAPIV 106 (516)
Q Consensus 88 ~a~n~~g~~~~s~~~~~~~ 106 (516)
+|.|..|.+.++.....+.
T Consensus 80 ~A~n~~G~~~~s~~~~~~~ 98 (205)
T 1cfb_A 80 IAFNKIGASPPSAHSDSCT 98 (205)
T ss_dssp EEEETTEECCCCCCCCCEE
T ss_pred EEEECCccCCCCCCceeEE
Confidence 9999999888774333333
|
| >4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.2e-13 Score=125.97 Aligned_cols=169 Identities=14% Similarity=0.148 Sum_probs=109.0
Q ss_pred ceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCc-----eeeEEeeCCeeec-------------cC
Q psy7039 123 DVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPF-----LNHGWSINGQVCQ-------------IG 184 (516)
Q Consensus 123 ~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-----~~i~W~~~~~~~~-------------~~ 184 (516)
.+.+.+|+.+.|.|.+. +.+. +.+.|++++.... ..
T Consensus 4 ~v~~~~G~~v~L~C~~~--------------------------~~~~~~~~~~~v~W~~~~~~~~i~~~~~~~~~~~~~~ 57 (222)
T 4i0k_A 4 PVVALVDTDATLRCSFS--------------------------PEPGFSLAQLNLIWQLTDTKQLVHSFTEGRDQGSAYS 57 (222)
T ss_dssp CCCCCTTSCEEECCBCC--------------------------CCTTCCTTTEEEEEEETTTCCEEEEEETTEEEEESSC
T ss_pred CEEEECCCCeEEEEEec--------------------------CCCCCCCCceEEEEEECCCccEEEEEcCCccccccee
Confidence 35678999999999998 5443 6788887653321 12
Q ss_pred CceEEee---cCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEEeece------ee---eeccccCCceEEEEEEEEc
Q psy7039 185 GRADVQT---TKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVTGT------EF---TDNNVHEGKAYEYRVSAVN 252 (516)
Q Consensus 185 ~~~~~~~---~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~~~~------~~---~~~~l~~g~~~~~~~~~~~ 252 (516)
.|..+.. .....+|.|.+++.+|+|.|+|.+.+.. .......+.+. .+ ....+..|..+.+.|.+.
T Consensus 58 ~r~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~-~~~~~~~l~V~~~~~~p~i~~~~~~~v~~G~~~~l~C~~~- 135 (222)
T 4i0k_A 58 NRTALFPDLLVQGNASLRLQRVRVTDEGSYTCFVSIQD-FDSAAVSLQVAAPYSKPSMTLEPNKDLRPGNMVTITCSSY- 135 (222)
T ss_dssp SCEECCTTTGGGTBCCEEECSCCGGGCSCEEEEEEECC-CCCCCCCCCCCBCCCCCEEECCC-----CCSEEEEEEEEE-
T ss_pred CcEEEecccccCCeEEEEECCcccccCEEEEEEEEeCC-CceEEEEEEEEcCCCCCcEEeCCCceecCCceEEEEEecc-
Confidence 2333221 1125689999999999999999999753 22222211111 11 122466799999999984
Q ss_pred cCCCCCceecccccccc----eEEE-EEecc---eeeEEEccCCCCCceEEEEEEEecCCCcceeEEEEEecCCCC
Q psy7039 253 AAGTEKPKISLDALIGK----RIKE-FVTST---TASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGP 320 (516)
Q Consensus 253 ~~g~p~p~i~W~~~~~~----~~~~-~~~~~---~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~ 320 (516)
.|.|.|.+.|.+..+. .... ..... ...|.|.++..+|.|.|+|.|.|..|....++.|.|..+|..
T Consensus 136 -~g~P~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~ 210 (222)
T 4i0k_A 136 -QGYPEAEVFWKDGQGVPLTGNVTTSQMANERGLFDVHSVLRVVLGANGTYSCLVRNPVLQQDAHGSVTITGQPLT 210 (222)
T ss_dssp -EEBSCCEEEEECTTSCBCCSEEEEEEEECTTSCEEEEEEEEEECCTTCEEEEEEEETTTTEEEEEEEECCC----
T ss_pred -cccCCCeEEEEcCCCccCCCCcceeEEcCCCCeEEEEEEEEEEeCCCCEEEEEEECCCCCCceEEEEEEeCCccc
Confidence 4778899999652221 1111 11112 234789999999999999999999999999999998877654
|
| >3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.8e-12 Score=121.26 Aligned_cols=168 Identities=13% Similarity=0.103 Sum_probs=111.2
Q ss_pred CcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCC--ee-------------ecc
Q psy7039 119 STLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSING--QV-------------CQI 183 (516)
Q Consensus 119 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~--~~-------------~~~ 183 (516)
..+..+.+.+|+++.|.|.+. +.+.+.+.|++.. .. ...
T Consensus 8 q~p~~~~v~~G~~v~L~C~~~--------------------------~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~ 61 (256)
T 3tf7_C 8 QPDARVTVSEGASLQLRCKYS--------------------------YSATPYLFWYVQYPRQGPQMLLKYYSGDPVVQG 61 (256)
T ss_dssp CSCSEEEEETTSCEEECCEEE--------------------------CSSCCEEEEEEECTTSCCEEEEEECSSCSEEEC
T ss_pred ecCceEEecCCCeEEEEEEeC--------------------------CCCCceEEEEEECCCCCeEEEEEEccCCccccc
Confidence 455678899999999999999 7788889998722 11 112
Q ss_pred CCceEEe--ecCCeeEEEeccCCCCCCeeEEEEEEcCCCce------EEEEEeec---------------------eee-
Q psy7039 184 GGRADVQ--TTKSETVLDIPFCSRSDTGHYSLTLENNLGTA------TASAHVTG---------------------TEF- 233 (516)
Q Consensus 184 ~~~~~~~--~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~------~~~~~~~~---------------------~~~- 233 (516)
..|+.+. ......+|.|.+++.+|+|.|.|.+.+..+.. ...+.+.. ..+
T Consensus 62 ~~r~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~v~ 141 (256)
T 3tf7_C 62 VNGFEAEFSKSDSSFHLRKASVHRSDSAVYFCAVSAKGTGSKLSFGKGAKLTVSPGGGGSGGGGSGGGGSGGGGSEAAVT 141 (256)
T ss_dssp STTCEEEEETTTTEEEEEESSCCGGGCSEEEEEEECTTCTTCEEECCCEEEEEEC---------------------CCEE
T ss_pred CCCeEEEEcCCCCEEEEEECCCCcccCEEEEEEEecCCCccceEECCCeEEEEeCCCCCcCCCCcCcccCCCCcCccEEE
Confidence 3455553 34556789999999999999999999865421 11122221 011
Q ss_pred ---eeccccCCceEEEEEEEEccCCCCCceeccccc-ccceEEEEE----------------------ecceeeEEEccC
Q psy7039 234 ---TDNNVHEGKAYEYRVSAVNAAGTEKPKISLDAL-IGKRIKEFV----------------------TSTTASLNIKNS 287 (516)
Q Consensus 234 ---~~~~l~~g~~~~~~~~~~~~~g~p~p~i~W~~~-~~~~~~~~~----------------------~~~~~~l~i~~l 287 (516)
....+.+|+.+.|.|.+ .+. .+.+.|.+. .+....... ......|.|.++
T Consensus 142 ~~p~~~~v~~G~~v~L~C~~---~~~-~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v 217 (256)
T 3tf7_C 142 QSPRNKVTVTGENVTLSCRQ---TNS-HNYMYWYRQDTGHELRLIYYSYGAGNLQIGDVPDGYKATRTTQEDFFLTLESA 217 (256)
T ss_dssp ESCSEEEEETTCCEEECEEE---CSC-CSEEEEEEECTTSCEEEEEEEESTTCCEECSCCTTCEEECCSSSBCEEEESSC
T ss_pred ecCCEEEEeCCCcEEEEEEc---CCC-ceEEEEEEECCCCCeEEEEEEcCCCceecCccCCceEEEeCCCCeEEEEECCC
Confidence 12245689999999998 454 678999652 111111111 224558999999
Q ss_pred CCCCceEEEEEEEecCCCcce--eEEEEEec
Q psy7039 288 VRKDSGIYKIEAKNDYGIDMA--DIEVVVVS 316 (516)
Q Consensus 288 ~~~d~g~y~c~a~n~~g~~~~--~~~l~v~~ 316 (516)
+.+|+|.|+|.|.|..|.... -..|.|..
T Consensus 218 ~~~DsG~Y~C~a~n~~g~~~fG~gt~l~v~~ 248 (256)
T 3tf7_C 218 SPSQTSLYFCASSDAPGQLYFGEGSKLTVLE 248 (256)
T ss_dssp CGGGCEEEEEEEEEETTEEEECCCEEEEEEC
T ss_pred CHHHCEEEEEEecCCCCccEECCCeEEEEEc
Confidence 999999999999998664322 23455543
|
| >2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A | Back alignment and structure |
|---|
Probab=99.47 E-value=9.8e-13 Score=121.40 Aligned_cols=155 Identities=17% Similarity=0.154 Sum_probs=105.2
Q ss_pred CcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeC--Ceee---------------
Q psy7039 119 STLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSIN--GQVC--------------- 181 (516)
Q Consensus 119 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~--~~~~--------------- 181 (516)
..+..+.+.+|+.+.|.|. . +.|.+.+.|+++ +...
T Consensus 5 q~p~~~~v~~G~~v~L~C~-~--------------------------~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~ 57 (238)
T 2p1y_A 5 QSPRNKVAVTGGKVTLSCN-Q--------------------------TNNHNNMYWYRQDTGHGLRLIHYSYGAGSTEKG 57 (238)
T ss_dssp EECSEEEEETTCCEEEEEE-E--------------------------CSCCSEEEEEEEETTTEEEEEEEESSTTCCEEC
T ss_pred ECccceEEeCCCEEEEEee-c--------------------------CCCCccEEEEEECCCCCcEEEEEEecCcceeCC
Confidence 3456688999999999999 7 778889999884 2111
Q ss_pred ccCCceEEee-cCCeeEEEeccCCCCCCeeEEEEEEcCCCce-------EEEEEeece-------------ee----eec
Q psy7039 182 QIGGRADVQT-TKSETVLDIPFCSRSDTGHYSLTLENNLGTA-------TASAHVTGT-------------EF----TDN 236 (516)
Q Consensus 182 ~~~~~~~~~~-~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~-------~~~~~~~~~-------------~~----~~~ 236 (516)
....|+.+.. .....+|.|.+++.+|+|.|.|.+.+..|.. ...+.+... .+ ...
T Consensus 58 ~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~g~~~~~~~~~~~~l~V~~~~~~~~p~~~~~~~~v~~~p~~~ 137 (238)
T 2p1y_A 58 DIPDGYKASRPSQENFSLILELATPSQTSVYFCASGDLGQTNERLFFGHGTKLSVLGSADDAKKDAAKKDGQVRQSPQSL 137 (238)
T ss_dssp SSCTTCEEECCSSSBCEEEESSCCGGGCEEEEEEEEC------CEEECCCEEEEEECCCHHHHHHHHHHHTCCEEECSEE
T ss_pred CccceEEEEccCCceEEEEEecCCcccCeeEEEEEEeCCCccccceeCCCeEEEEeccCCCCcCCcccceeeEEccCceE
Confidence 1134555543 3345689999999999999999999875421 111222110 11 123
Q ss_pred cccCCceEEEEEEEEccCCCCCceecccccc-c------------------ceEEEE--EecceeeEEEccCCCCCceEE
Q psy7039 237 NVHEGKAYEYRVSAVNAAGTEKPKISLDALI-G------------------KRIKEF--VTSTTASLNIKNSVRKDSGIY 295 (516)
Q Consensus 237 ~l~~g~~~~~~~~~~~~~g~p~p~i~W~~~~-~------------------~~~~~~--~~~~~~~l~i~~l~~~d~g~y 295 (516)
.+.+|+.+.|.|.+ .|.+.|.+.|.+.. + .++.+. .......|.|.+++.+|+|.|
T Consensus 138 ~v~~G~~v~L~C~~---~~~p~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y 214 (238)
T 2p1y_A 138 TVWEGETAILNCSY---ENSAFDYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQPGDSATY 214 (238)
T ss_dssp EEETTSCEEEEEEC---CCTTCCEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEETTCCGGGCEEE
T ss_pred EEeCCCeEEEEEEE---ecCCCCcEEEEEECCCCCCEEEEEEccCCCcccCCceEEEecCCCCeEEEEEcCCCHHHCEEE
Confidence 46789999999998 78888999996531 1 111111 122356899999999999999
Q ss_pred EEEEEecC
Q psy7039 296 KIEAKNDY 303 (516)
Q Consensus 296 ~c~a~n~~ 303 (516)
+|.|.|..
T Consensus 215 ~C~a~n~~ 222 (238)
T 2p1y_A 215 FCAAIDTN 222 (238)
T ss_dssp EEEEEETT
T ss_pred EEEEeeCC
Confidence 99999973
|
| >3knb_B Obscurin-like protein 1; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2wp3_O* 2wwm_C 2wwk_O | Back alignment and structure |
|---|
Probab=99.47 E-value=1.6e-13 Score=109.58 Aligned_cols=91 Identities=23% Similarity=0.235 Sum_probs=81.1
Q ss_pred CCCccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEee
Q psy7039 112 LAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQT 191 (516)
Q Consensus 112 ~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~ 191 (516)
.||.|. ..+.++.+.+|+.+.|.|.+. |.|.+.+.|++++..+....++.+..
T Consensus 12 ~pP~f~-~~p~~~~v~~G~~~~l~C~~~--------------------------G~P~p~v~W~k~g~~l~~~~~~~~~~ 64 (107)
T 3knb_B 12 SPPCFL-RFPRPVRVVSGAEAELKCVVL--------------------------GEPPPVVVWEKGGQQLAASERLSFPA 64 (107)
T ss_dssp EEEEEE-ECCCCEEEETTSCEEEEEEEE--------------------------EESCCEEEEEETTEECCCCSSEECCE
T ss_pred CCCEEE-eCCCcEEEeCCCcEEEEEEEE--------------------------EecCCEEEEEECcccccceeeEEEee
Confidence 467776 667889999999999999999 99999999999999999888888888
Q ss_pred cCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEEee
Q psy7039 192 TKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVT 229 (516)
Q Consensus 192 ~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~~ 229 (516)
.+...+|.|.+++.+|+|.|+|.+.|..|....+..+.
T Consensus 65 ~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~ 102 (107)
T 3knb_B 65 DGAEHGLLLTAALPTDAGVYVCRARNAAGEAYAAAAVT 102 (107)
T ss_dssp ETTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEE
T ss_pred cCceEEEEEecCChhhCEEEEEEEEECCCEEEEEEEEE
Confidence 88888999999999999999999999999877665443
|
| >1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=6.1e-13 Score=119.34 Aligned_cols=167 Identities=13% Similarity=0.074 Sum_probs=108.4
Q ss_pred cccCCceEEEEEEEEcc-CCCCCceecccccccce-----------------EEEEEecceeeEEEccCCCCCceEEEEE
Q psy7039 237 NVHEGKAYEYRVSAVNA-AGTEKPKISLDALIGKR-----------------IKEFVTSTTASLNIKNSVRKDSGIYKIE 298 (516)
Q Consensus 237 ~l~~g~~~~~~~~~~~~-~g~p~p~i~W~~~~~~~-----------------~~~~~~~~~~~l~i~~l~~~d~g~y~c~ 298 (516)
.+..|+.+.|.|.+... .|.+.+.+.|.+..... ..+ .......|.|.+++.+|+|.|+|.
T Consensus 5 ~v~~G~~v~L~C~~~~~~~~~~~~~~~W~~~~~~i~~~~~~~~~~~~~~~~r~~~-~~~~~~~L~I~~v~~~D~G~Y~C~ 83 (201)
T 1dr9_A 5 TKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIF-DITNNLSIVILALRPSDEGTYECV 83 (201)
T ss_dssp EEETTSCEEECCSCCCCTTHHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEE-ESTTTTEEEECSCCGGGCEEEEEE
T ss_pred EEEeCCCEEEecccCCCcccccccEEEEEeCCcEEEEEeCCceeecCcccceeEE-ccCCCcEEEEecccchhCeEEEEE
Confidence 35678999999987321 13466788886522111 111 123457899999999999999999
Q ss_pred EEecCCCcc-----eeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeE
Q psy7039 299 AKNDYGIDM-----ADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEF 373 (516)
Q Consensus 299 a~n~~g~~~-----~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~ 373 (516)
|.|..|... ..+.|.|...+..|.. .......|+.+
T Consensus 84 ~~~~~g~~~~~~~~~~~~l~V~~~~~~p~~---------------------------------------~~~~~~~g~~~ 124 (201)
T 1dr9_A 84 VLKYEKDAFKREHLAEVTLSVKADFPTPSI---------------------------------------SDFEIPTSNIR 124 (201)
T ss_dssp EEECCTTSCEEEEEEEEEEEEECCCCCCEE---------------------------------------EEEECSSTTEE
T ss_pred EEcCCCCccccccccEEEEEEcCCCCCCce---------------------------------------EeccCCCCCeE
Confidence 999876643 3566666654332210 00111347889
Q ss_pred EEEEEEe-eecCCceEEEECCeecCCCCceEEEEcC-Ce-EEEEEcCceecCCceEEEEEEEcCCCceeEEEEE
Q psy7039 374 TITVPFS-GRPKPTPIWTVNGDEVSPDGRIKFETSE-NQ-TIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKV 444 (516)
Q Consensus 374 ~l~C~~~-g~p~~~i~W~~~~~~l~~~~~~~~~~~~-~~-~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l 444 (516)
.|.|.+. |.|.|.|.|++++..+............ +. ....+..+.. .|.|.|+|.|.|..|..+..+.+
T Consensus 125 ~l~C~~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~v~~-~d~g~Y~C~a~n~~~~~s~~~~~ 197 (201)
T 1dr9_A 125 RIICSTSGGFPEPHLSWLENGEELNAINTTVSQDPETELYAVSSKLDFNM-TTNHSFMCLIKYGHLRVNQTFNW 197 (201)
T ss_dssp EEEEEEEEESSCEEEEEEESSCEECCSEEEEEECTTTCCEEEEEEEEEET-TSCEEEEEEEEETTCCEEEEEEE
T ss_pred EEEEecCCccCCCEEEEEECCEECccccceEEecCCCcEEEEEEEEEEEe-cCCCEEEEEEecCcceeeeEEec
Confidence 9999994 9999999999999887643322222211 21 2223345566 89999999999999987765443
|
| >2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 | Back alignment and structure |
|---|
Probab=99.47 E-value=9.5e-13 Score=106.52 Aligned_cols=95 Identities=31% Similarity=0.447 Sum_probs=85.8
Q ss_pred ccccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeE
Q psy7039 361 SIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSA 440 (516)
Q Consensus 361 ~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~ 440 (516)
.+..+.+..|+.+.|.|.+.|.|.+.+.|++++..+....++.+........|.|.++.. .|.|.|+|.|.|..|....
T Consensus 13 ~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~~~~L~I~~v~~-~D~G~Y~C~a~N~~g~~~~ 91 (114)
T 2cqv_A 13 FPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTILAARQ-EHCGCYTLLVENKLGSRQA 91 (114)
T ss_dssp CCCSEEEETTCCEEEEEEEESSSSCEEEEEESSSBCCCSSSEEEEECSSEEEEEETTCCT-TTCEEEEEEEECSSCEEEC
T ss_pred CCCCeEEeCCCeEEEEEEEEcCCCCEEEEEECCEECcCCCCEEEEEcCCEEEEEECCCCh-hcCEEEEEEEEECCCcEEE
Confidence 456688999999999999999999999999999998877888888777778999999999 9999999999999999999
Q ss_pred EEEEEEecCCCCCCCC
Q psy7039 441 SCKVYVVDKPSPPQGP 456 (516)
Q Consensus 441 s~~l~v~~~p~~P~~~ 456 (516)
.+.|.|..+|.+|..+
T Consensus 92 ~~~l~V~~~p~~P~~p 107 (114)
T 2cqv_A 92 QVNLTVVDKPDPPAGT 107 (114)
T ss_dssp CEEEEEECSCSCCCCC
T ss_pred EEEEEEECCCCCCCCC
Confidence 9999999999888433
|
| >1x3d_A Fibronectin type-III domain containing protein 3A; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 | Back alignment and structure |
|---|
Probab=99.46 E-value=6.1e-13 Score=108.40 Aligned_cols=101 Identities=21% Similarity=0.336 Sum_probs=87.1
Q ss_pred CcceeccCCCCCCCCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCC--CeEEeEEeecCCcEEEeCCCcC
Q psy7039 2 DHSVLIKNPFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTG--NWEKAVVVPAGETSCTVPGLIE 79 (516)
Q Consensus 2 ~~~~~~~~~~~~p~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~--~~~~~~~~~~~~~~~~i~~l~~ 79 (516)
|+.+.+++..+.|++|.++++..++.++|.|+|.+|. +++++|.+|.|+|+..+. .|..+... ..++++|.+|++
T Consensus 6 S~~~~~~t~~~~P~~P~~~~~~~~~~~sv~l~W~~p~-~~~~~i~~Y~v~~~~~~~~~~~~~~~~~--~~~~~~v~~L~p 82 (118)
T 1x3d_A 6 SGAEIFTTLSCEPDIPNPPRIANRTKNSLTLQWKAPS-DNGSKIQNFVLEWDEGKGNGEFCQCYMG--SQKQFKITKLSP 82 (118)
T ss_dssp CCCCCCCCCCSCCCCCCCCEEEEEETTEEEEECCCCC-CCSSCEEEEEEEECTTTSSSCCEEEEEE--SCSEEEEESCCT
T ss_pred CcCEEEEcCCCCCcCCCCcEEeccCCCEEEEEECCCC-CCCCcceEEEEEEecCCCCCCeEEeecc--CCcEEEeCCCCC
Confidence 6778889999999999999999999999999999986 667889999999987543 78766444 568999999999
Q ss_pred CCeEEEEEEEecCCCCCCCCCCCcce
Q psy7039 80 GETYQFQVRAVNAAGPGEASKPTAPI 105 (516)
Q Consensus 80 ~~~y~~~~~a~n~~g~~~~s~~~~~~ 105 (516)
++.|.|+|+|.|..|.+.++......
T Consensus 83 ~t~Y~frV~A~n~~G~s~~S~~~~~~ 108 (118)
T 1x3d_A 83 AMGCKFRLSARNDYGTSGFSEEVLYY 108 (118)
T ss_dssp TCEEEEECCEEESSCBCCCCCCEEEE
T ss_pred CCEEEEEEEEEECCCCCCCccCEEEE
Confidence 99999999999999998887655433
|
| >1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=7.9e-13 Score=118.59 Aligned_cols=164 Identities=10% Similarity=-0.006 Sum_probs=106.4
Q ss_pred ceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeecc------------CCceEEe
Q psy7039 123 DVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQI------------GGRADVQ 190 (516)
Q Consensus 123 ~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~------------~~~~~~~ 190 (516)
.+.+..|+.+.|.|.+.. +. .+.|.+.+.|++++..+.. ..|..+.
T Consensus 3 ~v~v~~G~~v~L~C~~~~-------~~---------------~~~~~~~~~W~~~~~~i~~~~~~~~~~~~~~~~r~~~~ 60 (201)
T 1dr9_A 3 HVTKEVKEVATLSCGHNV-------SV---------------EELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFD 60 (201)
T ss_dssp EEEEETTSCEEECCSCCC-------CT---------------THHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEEE
T ss_pred eEEEEeCCCEEEecccCC-------Cc---------------ccccccEEEEEeCCcEEEEEeCCceeecCcccceeEEc
Confidence 477899999999999860 00 0346789999998877621 1233322
Q ss_pred ecCCeeEEEeccCCCCCCeeEEEEEEcCCCceE-----EEEEeece------eeeeccccCCceEEEEEEEEccCCCCCc
Q psy7039 191 TTKSETVLDIPFCSRSDTGHYSLTLENNLGTAT-----ASAHVTGT------EFTDNNVHEGKAYEYRVSAVNAAGTEKP 259 (516)
Q Consensus 191 ~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~-----~~~~~~~~------~~~~~~l~~g~~~~~~~~~~~~~g~p~p 259 (516)
.....+|.|.+++.+|+|.|.|.+.+..|... ..+.+.+. .........|..+.+.|.+. .|.|.|
T Consensus 61 -~~~~~~L~I~~v~~~D~G~Y~C~~~~~~g~~~~~~~~~~~~l~V~~~~~~p~~~~~~~~~g~~~~l~C~~~--~g~P~p 137 (201)
T 1dr9_A 61 -ITNNLSIVILALRPSDEGTYECVVLKYEKDAFKREHLAEVTLSVKADFPTPSISDFEIPTSNIRRIICSTS--GGFPEP 137 (201)
T ss_dssp -STTTTEEEECSCCGGGCEEEEEEEEECCTTSCEEEEEEEEEEEEECCCCCCEEEEEECSSTTEEEEEEEEE--EESSCE
T ss_pred -cCCCcEEEEecccchhCeEEEEEEEcCCCCccccccccEEEEEEcCCCCCCceEeccCCCCCeEEEEEecC--CccCCC
Confidence 23456899999999999999999999765432 22222221 12223335688899999982 488999
Q ss_pred eecccccc----cceEEEEEecceeeE---EEccCCCCCceEEEEEEEecCCCcceeEE
Q psy7039 260 KISLDALI----GKRIKEFVTSTTASL---NIKNSVRKDSGIYKIEAKNDYGIDMADIE 311 (516)
Q Consensus 260 ~i~W~~~~----~~~~~~~~~~~~~~l---~i~~l~~~d~g~y~c~a~n~~g~~~~~~~ 311 (516)
.+.|.+.. ............+.+ .+..+...|.|.|+|.|.|..|..+..+.
T Consensus 138 ~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~d~g~Y~C~a~n~~~~~s~~~~ 196 (201)
T 1dr9_A 138 HLSWLENGEELNAINTTVSQDPETELYAVSSKLDFNMTTNHSFMCLIKYGHLRVNQTFN 196 (201)
T ss_dssp EEEEEESSCEECCSEEEEEECTTTCCEEEEEEEEEETTSCEEEEEEEEETTCCEEEEEE
T ss_pred EEEEEECCEECccccceEEecCCCcEEEEEEEEEEEecCCCEEEEEEecCcceeeeEEe
Confidence 99997621 111122222221221 33456678999999999999988765544
|
| >2crz_A Fibronectin type-III domain containing protein 3A; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 | Back alignment and structure |
|---|
Probab=99.46 E-value=5.2e-13 Score=107.33 Aligned_cols=98 Identities=33% Similarity=0.522 Sum_probs=82.4
Q ss_pred cCCCCCCCCCcceEE-EeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCC-CeEEeEEeecCCcEEEeCCCcCCCeEEE
Q psy7039 8 KNPFDEPGKPTDLEA-TDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTG-NWEKAVVVPAGETSCTVPGLIEGETYQF 85 (516)
Q Consensus 8 ~~~~~~p~~p~~l~~-~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~-~~~~~~~~~~~~~~~~i~~l~~~~~y~~ 85 (516)
.+...+|++|.++.+ ..+++++|.|+|.+|..+++++|.+|.|+++..+. .|..+.. ...++++|.+|++++.|.|
T Consensus 3 st~~~~P~~P~~~~~~~~~~~~sv~l~W~~P~~~~~~~i~~Y~v~~~~~~~~~~~~~~~--~~~~~~~v~~L~p~t~Y~f 80 (110)
T 2crz_A 3 SGSSGPPGPCLPPRLQGRPKAKEIQLRWGPPLVDGGSPISCYSVEMSPIEKDEPREVYQ--GSEVECTVSSLLPGKTYSF 80 (110)
T ss_dssp CSCCCCCCCCCCCEECSCCCSSEEEEECCCCSCCTTSCCCEEEEEEECTTSCCCEEEEE--ESCSEEEEESCCTTCEEEE
T ss_pred CCcCCCCCCCCCceeccccCCCEEEEEeCCCCCCCCceeEEEEEEEEeCCCCceEEEEe--CCcEEEEECCcCCCCEEEE
Confidence 356788999999999 46788999999999877888899999999997655 7877653 4689999999999999999
Q ss_pred EEEEecCCCCCCCCCCCcceEe
Q psy7039 86 QVRAVNAAGPGEASKPTAPIVA 107 (516)
Q Consensus 86 ~~~a~n~~g~~~~s~~~~~~~~ 107 (516)
+|+|.|..|.+.++......+.
T Consensus 81 rV~A~n~~G~g~~S~~~~~~T~ 102 (110)
T 2crz_A 81 RLRAANKMGFGPFSEKCDITTA 102 (110)
T ss_dssp CCEEECSSCBCCCCCCEEEECC
T ss_pred EEEEEcCCccCCCCCccccccC
Confidence 9999999999888765544443
|
| >1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H | Back alignment and structure |
|---|
Probab=99.46 E-value=2.9e-12 Score=119.78 Aligned_cols=169 Identities=14% Similarity=0.125 Sum_probs=112.9
Q ss_pred CcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcC--ceeeEEeeC--Ceeec------------
Q psy7039 119 STLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEP--FLNHGWSIN--GQVCQ------------ 182 (516)
Q Consensus 119 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p--~~~i~W~~~--~~~~~------------ 182 (516)
..+..+.+.+|+++.|.|.+. +.| .+.+.|+++ +..+.
T Consensus 5 ~~p~~~~v~~G~~v~L~C~~~--------------------------g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~ 58 (256)
T 1nqb_A 5 QQSGAELVKPGASVKLSCKAS--------------------------GYTFTSYWMHWVKQRPGRGLEWIGRIDPNSGGT 58 (256)
T ss_dssp EECCCEEECTTCCEEEEEEEC--------------------------SSCGGGSCEEEEEEETTTEEEEEEEECTTTCCE
T ss_pred ECCCCeeecCCCcEEEEEEec--------------------------cccCCCceEEEEEECCCCCcEEEEEEecCCCce
Confidence 344567899999999999998 654 567888873 22110
Q ss_pred -----cCCceEEeec--CCeeEEEeccCCCCCCeeEEEEEEcCCCc----e---EEEEEeec-ee----eeeccccCCce
Q psy7039 183 -----IGGRADVQTT--KSETVLDIPFCSRSDTGHYSLTLENNLGT----A---TASAHVTG-TE----FTDNNVHEGKA 243 (516)
Q Consensus 183 -----~~~~~~~~~~--~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~----~---~~~~~~~~-~~----~~~~~l~~g~~ 243 (516)
...|+.+... ....+|.|.+++.+|+|.|.|.+.+..|. . ...+.+.. .. .....+.+|..
T Consensus 59 ~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~~~v~~~p~~~~v~~G~~ 138 (256)
T 1nqb_A 59 KYNEKFKSKATLTVDKPSSTAYMQLSSLTSEDSAVYYCARYDYYGSSYFDYWGQGTTVTVSSDIELTQTPLSLPVSLGDQ 138 (256)
T ss_dssp EECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECCTTSSSSCSEECCCEEEEECCCCCEEEECSEEEECTTCC
T ss_pred eeCcccCCeEEEEEecCCCEEEEEECcCChhhCEEEEEEEeeccCccceeEEcCceeeeecccccEEecCcEEEEecCCc
Confidence 1356665542 45679999999999999999999987552 1 11222211 11 12235788999
Q ss_pred EEEEEEEEccCCCCCc-----eeccccc-ccc------------------eEEEEEecceeeEEEccCCCCCceEEEEEE
Q psy7039 244 YEYRVSAVNAAGTEKP-----KISLDAL-IGK------------------RIKEFVTSTTASLNIKNSVRKDSGIYKIEA 299 (516)
Q Consensus 244 ~~~~~~~~~~~g~p~p-----~i~W~~~-~~~------------------~~~~~~~~~~~~l~i~~l~~~d~g~y~c~a 299 (516)
+.|.|.+ .|.+.+ .+.|.+. .+. ++..........|.|.+++.+|+|.|+|.|
T Consensus 139 v~L~C~~---~~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a 215 (256)
T 1nqb_A 139 ASISCRS---SQSIVHSNGNTYLEWYLQKPGQSPKLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLGVYYCFQ 215 (256)
T ss_dssp EEEEEEE---SSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEE
T ss_pred EEEEeEe---cCcccccccceEEEEEEECCCCCcEEEEEEeCCCCCccCCcEEEEccCCEEEEEECCCChHHCEEEEEEE
Confidence 9999998 677665 8999762 111 222223345678999999999999999999
Q ss_pred EecCCCc-ceeEEEEEec
Q psy7039 300 KNDYGID-MADIEVVVVS 316 (516)
Q Consensus 300 ~n~~g~~-~~~~~l~v~~ 316 (516)
.|..... .....|.|..
T Consensus 216 ~~~~~~~fg~gt~l~V~~ 233 (256)
T 1nqb_A 216 GSHVPYTFGGGTKLEIKR 233 (256)
T ss_dssp CSSSSCEECCCEEEEECC
T ss_pred ccCCceEECCCEEEEEEC
Confidence 9854321 2234566643
|
| >3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 3tnm_L 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A ... | Back alignment and structure |
|---|
Probab=99.46 E-value=1.8e-12 Score=117.16 Aligned_cols=166 Identities=14% Similarity=0.135 Sum_probs=111.1
Q ss_pred ccccCCceEEEEEEEEccCCCCCceeccccc-------------------ccceEEEEEecceeeEEEccCCCCCceEEE
Q psy7039 236 NNVHEGKAYEYRVSAVNAAGTEKPKISLDAL-------------------IGKRIKEFVTSTTASLNIKNSVRKDSGIYK 296 (516)
Q Consensus 236 ~~l~~g~~~~~~~~~~~~~g~p~p~i~W~~~-------------------~~~~~~~~~~~~~~~l~i~~l~~~d~g~y~ 296 (516)
..+.+|+.+.|.|.+ . +.+.+.|.+. ...++..........|.|.+++.+|+|.|+
T Consensus 10 ~~v~~G~~v~L~C~~---~--~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~ 84 (211)
T 3tv3_L 10 ASGSPGQSITISCTG---T--SNNFVSWYQQHAGKAPKLVIYDVNKRPSGVPDRFSGSKSGNTASLTVSGLQTDDEAVYY 84 (211)
T ss_dssp EEECTTCEEEEEEEC---C--CSSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEEESCCGGGCEEEE
T ss_pred EEEcCCCCEEEEEEE---C--CCCeEEEEEECCCCCCEEEEEEecccCCCCcCcEEEEccCCEEEEEECCCChhHCEEEE
Confidence 456789999999987 3 7888999652 112344444556778999999999999999
Q ss_pred EEEEecCC--CcceeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEE
Q psy7039 297 IEAKNDYG--IDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFT 374 (516)
Q Consensus 297 c~a~n~~g--~~~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~ 374 (516)
|.|.|..+ .......|.|...+..+.. +.+ .+....+..|+.+.
T Consensus 85 C~~~~~~~~~~~~~~~~l~V~~~~~~~P~-v~~---------------------------------~~~~~~~~~g~~v~ 130 (211)
T 3tv3_L 85 CGSLVGNWDVIFGGGTKLTVLGQPKAAPS-VTL---------------------------------FPPSSEELQANKAT 130 (211)
T ss_dssp EEEEETTTEEEECCCEEEEECCSCCBCCE-EEE---------------------------------ECCCHHHHHTTCEE
T ss_pred EEEecCCCceeECCCceEEEeCCCCcCCe-eEe---------------------------------cCCchhhhcCCCeE
Confidence 99999887 3445567777643211110 000 00111122689999
Q ss_pred EEEEEeeecC--CceEEEECCeecCCCCce--EEEEcCC----eEEEEEcCceecCCceEEEEEEEcCCCceeEE
Q psy7039 375 ITVPFSGRPK--PTPIWTVNGDEVSPDGRI--KFETSEN----QTIYRNKSAKRATDSGSYTIQLVNTVGSDSAS 441 (516)
Q Consensus 375 l~C~~~g~p~--~~i~W~~~~~~l~~~~~~--~~~~~~~----~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s 441 (516)
|.|.+.|.++ +.+.|+++|..+..+... ......+ ...|.|..+.. +|.|.|+|.|.|..+....+
T Consensus 131 l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~-~d~g~Y~C~v~~~~~~~~~~ 204 (211)
T 3tv3_L 131 LVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQW-KSHRSYSCQVTHEGSTVEKT 204 (211)
T ss_dssp EEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEECTTSSEEEEEEEEECHHHH-HHSSCEEEEEEETTEEEEEE
T ss_pred EEEEeeeecCCCeEEEEEECCeecCCCcccCCceECCCCCEEEEEEEEEcHHHh-CCCCeEEEEEEECCCCEEee
Confidence 9999998644 689999999877532100 0011111 14689999988 89999999999998654443
|
| >3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=1.5e-12 Score=121.14 Aligned_cols=175 Identities=15% Similarity=0.094 Sum_probs=110.7
Q ss_pred ccccCCceEEEEEEEEccCCCCCceecccccc-------------------cceEEEEEecceeeEEEccCCCCCceEEE
Q psy7039 236 NNVHEGKAYEYRVSAVNAAGTEKPKISLDALI-------------------GKRIKEFVTSTTASLNIKNSVRKDSGIYK 296 (516)
Q Consensus 236 ~~l~~g~~~~~~~~~~~~~g~p~p~i~W~~~~-------------------~~~~~~~~~~~~~~l~i~~l~~~d~g~y~ 296 (516)
..+.+|+.+.|.|.+ .|.+.+.+.|.+.. ..++..........|.|.+++.+|+|.|+
T Consensus 14 ~~v~~G~~v~L~C~~---~~~~~~~i~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~ 90 (250)
T 3esu_F 14 LSASLGDRVTISCRA---SQDIRNYLNWYQQKPDGTVKLLIYYTSRLQSGVPSRFSGSGSGTDYSLTISNLEQEDIGTYF 90 (250)
T ss_dssp EEECTTCCEEEEEEE---SSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred EEeeCCCcEEEEEEe---cccCCceEEEEEECCCCCCEEEEEEeCCCCCCCCCCEEEeCCCCEEEEEEccCChhhCEEEE
Confidence 346789999999998 78888999996521 12333333445668999999999999999
Q ss_pred EEEEecCCCc-ceeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEE
Q psy7039 297 IEAKNDYGID-MADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTI 375 (516)
Q Consensus 297 c~a~n~~g~~-~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l 375 (516)
|.+.|..+.. .....|.|...+..... ......... +.........+....+.+|+.+.|
T Consensus 91 C~~~n~~~~~~~~~~~l~V~~~~~~~~~-~~~~~~~~~------------------~~~~~~~~~~~~~~~v~~G~~v~L 151 (250)
T 3esu_F 91 CQQGNTLPWTFGGGTKLEIRRGGGGSGG-GGSGGGGSG------------------GGGSEVQLQQSGPELVKPGASVKI 151 (250)
T ss_dssp EEECSSSSCEECCCEEEEEC-------------------------------------------CEECCCEEECTTCCEEE
T ss_pred EEEeeCCCceECCCEEEEEECCCCcccc-ccccccccc------------------CcccceEEecCCceEEcCCceEEE
Confidence 9999876542 23345666543211000 000000000 000000001224466889999999
Q ss_pred EEEEeeec--CCceEEEEC--CeecC-----------------CCCceEEEEc--CCeEEEEEcCceecCCceEEEEEEE
Q psy7039 376 TVPFSGRP--KPTPIWTVN--GDEVS-----------------PDGRIKFETS--ENQTIYRNKSAKRATDSGSYTIQLV 432 (516)
Q Consensus 376 ~C~~~g~p--~~~i~W~~~--~~~l~-----------------~~~~~~~~~~--~~~~~l~i~~~~~~~~~g~y~c~a~ 432 (516)
.|.+.+.+ .+.+.|+++ +..+. ...++.+... ....+|.|.++.. .|+|.|.|.|.
T Consensus 152 ~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~-~DsG~Y~C~~~ 230 (250)
T 3esu_F 152 SCKDSGYAFSSSWMNWVKQRPGQGPEWIGRIYPGDGDTNYNGKFKGKATLTADKSSSTAYMQLSSLTS-VDSAVYFCARS 230 (250)
T ss_dssp EEECCSTTGGGSEEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCCG-GGCEEEEEEEE
T ss_pred EEEecCCcccCCEEEEEEECCCCCcEEEEEEeccCCccccCccccceEEEEecCCCCeEEEEECCCCc-ccCEEEEEEEe
Confidence 99998876 679999987 33221 1245555432 4556899999999 99999999999
Q ss_pred c
Q psy7039 433 N 433 (516)
Q Consensus 433 n 433 (516)
|
T Consensus 231 ~ 231 (250)
T 3esu_F 231 G 231 (250)
T ss_dssp C
T ss_pred c
Confidence 7
|
| >1mju_H Immunoglobulin MS6-12; catalytic antibody, ester hydrolysis, esterolytic, FAB, immune system; 1.22A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mjj_B 1mie_H 1mj7_H* 1mj8_H 1mh5_B* 4aeh_H 2y5t_A 2vwe_E 2op4_H 2ntf_H 3loh_C 1e4x_H 2vl5_A 1e4x_I 1e4w_H 3opz_H 3oz9_H 1plg_H 1hi6_B 1cfn_B ... | Back alignment and structure |
|---|
Probab=99.46 E-value=1.1e-12 Score=120.20 Aligned_cols=85 Identities=16% Similarity=0.149 Sum_probs=53.6
Q ss_pred EEcCCeEEEEEEEeee-cCC-ceEEEECCeecCCCCceEEEEcC---CeEEEEEcCceecCCceEEEEEEEcCCCceeEE
Q psy7039 367 VLAGEEFTITVPFSGR-PKP-TPIWTVNGDEVSPDGRIKFETSE---NQTIYRNKSAKRATDSGSYTIQLVNTVGSDSAS 441 (516)
Q Consensus 367 v~~g~~~~l~C~~~g~-p~~-~i~W~~~~~~l~~~~~~~~~~~~---~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s 441 (516)
+..|+.+.|.|.+.|. |.+ .+.|++++..+...........+ ..+.|.|..+.. ++ |.|+|.|.|..+.....
T Consensus 133 ~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~-~~-g~Y~C~a~n~~~~~~~~ 210 (227)
T 1mju_H 133 DTSGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTW-PS-QSITCNVAHPASSTKVD 210 (227)
T ss_dssp -----CEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEEETTEEEEEEEEEECTTTT-TT-SCCEEEEEEGGGTEEEE
T ss_pred ccCCCcEEEEEEeecEeCCCeEEEEecCCCcCCcEECCceecCCeEEEEEEEEEchhhc-CC-CeEEEEEEECCCCcceE
Confidence 4578899999999986 666 99999998754211000000111 124789988887 78 99999999988777776
Q ss_pred EEEEEecCCCCC
Q psy7039 442 CKVYVVDKPSPP 453 (516)
Q Consensus 442 ~~l~v~~~p~~P 453 (516)
..+.+..+|..|
T Consensus 211 ~~~~~~~~p~~~ 222 (227)
T 1mju_H 211 KKIEPRGPTIKP 222 (227)
T ss_dssp EECCCCCC----
T ss_pred EEeCCCCCCCCC
Confidence 777666666554
|
| >3p4l_A Neogenin; iron homeostasis, hemojuvelin receptor, FNIII domain, fibron type III, cell adhesion; 1.80A {Homo sapiens} PDB: 1x5k_A | Back alignment and structure |
|---|
Probab=99.46 E-value=5.4e-12 Score=114.15 Aligned_cols=89 Identities=19% Similarity=0.162 Sum_probs=70.2
Q ss_pred CCCCCCcceEEEeeeCCeeEEEecCCCCC---CCCceeceEEEEEeCCC-CeEEeEEeecCCcEEEeCCCcCCCeEEEEE
Q psy7039 12 DEPGKPTDLEATDWDKDHVDLQWTPPISD---GGSPITGYVVEMKDKTG-NWEKAVVVPAGETSCTVPGLIEGETYQFQV 87 (516)
Q Consensus 12 ~~p~~p~~l~~~~~~~~~v~l~W~~p~~~---~~~~i~~Y~v~~~~~~~-~~~~~~~~~~~~~~~~i~~l~~~~~y~~~~ 87 (516)
.+|++|.++++..++++++.|+|.+|..+ .++.+.+|.|+|+..+. .+.. .......+++.|.+|++++.|.|+|
T Consensus 3 ~P~~~P~~l~~~~~~~~si~l~W~~p~~~~~~~~~~i~~Y~v~~~~~~~~~~~~-~~~~~~~~~~~i~~L~p~t~Y~~~V 81 (211)
T 3p4l_A 3 LPMMPPVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTKY-KNANATTLSYLVTGLKPNTLYEFSV 81 (211)
T ss_dssp CCCCCCEEEEEEECSSSCEEEEEECTTSCTTCCCCSSCEEEEEEEECC---CCC-EEEEESSSEEEECSCCTTCEEEEEE
T ss_pred CCCCCCCCEEEEecCCCeEEEEEeCCCCCcccccCCCcEEEEEEEECCCCcceE-EEeCCCceEEEecCcCCCCEEEEEE
Confidence 45679999999999999999999997422 24678999999998655 2222 2234578899999999999999999
Q ss_pred EEecCCCCCCCCCC
Q psy7039 88 RAVNAAGPGEASKP 101 (516)
Q Consensus 88 ~a~n~~g~~~~s~~ 101 (516)
+|.|..|.+.++..
T Consensus 82 ~A~n~~g~~~~S~~ 95 (211)
T 3p4l_A 82 MVTKGRRSSTWSMT 95 (211)
T ss_dssp EEEETTEECCCCCC
T ss_pred EEEcCCCCCcccee
Confidence 99999887776543
|
| >1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A | Back alignment and structure |
|---|
Probab=99.46 E-value=4e-14 Score=125.64 Aligned_cols=167 Identities=11% Similarity=0.103 Sum_probs=104.3
Q ss_pred cCCceEEEEEEEEccCCCCCceecccccccceEEEEEecceeeEEEcc-CCCCCceEEEEEEEecCCCcceeEEEEEecC
Q psy7039 239 HEGKAYEYRVSAVNAAGTEKPKISLDALIGKRIKEFVTSTTASLNIKN-SVRKDSGIYKIEAKNDYGIDMADIEVVVVSK 317 (516)
Q Consensus 239 ~~g~~~~~~~~~~~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~l~i~~-l~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~ 317 (516)
..|+.+.|.|.+ .| + +.+.|.+... .+ .......|.|.+ +..+|+|.|+|.|.|..|.......+.|...
T Consensus 12 ~~G~~v~L~C~~---~~-~-~~i~W~k~g~-~l---~~~~~~~L~I~~~~~~~D~G~Y~C~a~n~~g~~~~~~~~~v~~~ 82 (186)
T 1jbj_A 12 ISGTSVELTCPL---DS-D-ENLKWEKNGQ-EL---PQKHDKHLVLQDFSEVEDSGYYVCYTPASNKNTYLYLKARVGSA 82 (186)
T ss_dssp EETTEEEEECSS---CC-C-TTCEEEETTE-EE---CSCCCSEEEEESCCTTTSCEEEEEECSSCCCCCCEEECCCCCSC
T ss_pred eCCcEEEEEEeC---CC-C-CceEEEECCE-EC---CCCCCCEEEECCCCccccCEEEEEEEEeCCCcEEEEEEEEEecc
Confidence 569999999987 55 3 3489976321 11 011456899999 9999999999999999888655555554433
Q ss_pred CCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeeecCCceEEEECCeecC
Q psy7039 318 PGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVS 397 (516)
Q Consensus 318 p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~ 397 (516)
..+...+....... .. .+|. +..+ ............+..|+.+.|.|.+ |.|.|.|++++..+.
T Consensus 83 ~~~~~~~~~~~~~~-----~~-~~~~------~~~~-~~~~~~~~~~~~~~~G~~v~l~C~~---p~p~i~W~k~g~~i~ 146 (186)
T 1jbj_A 83 DDAKKDAAKKDDAK-----KD-DAKK------DGSQ-TNKAKNLVQVDGSRGDGSVLLTCGL---TDKTIKWLKDGSIIS 146 (186)
T ss_dssp CCCCCCCCCCCCCS-----CC-SSST------TCCS-CCCCSSCCEECCCSSSCEEEEECSS---SCSCEEEEETTEECC
T ss_pred cccccccccccccc-----cC-Cccc------cccc-cccccccccceecCCCCeEEEEeeC---CCCeEEEEECCEECc
Confidence 32221100000000 00 0000 0000 0000000111123499999999998 788999999998875
Q ss_pred CCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCce
Q psy7039 398 PDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSD 438 (516)
Q Consensus 398 ~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~ 438 (516)
.... ....|.|.++.. .|+|.|+|.|.|..|..
T Consensus 147 ~~~~-------~~~~L~i~~v~~-~D~G~Y~C~a~N~~g~~ 179 (186)
T 1jbj_A 147 PLNA-------TKNTWNLGNNAK-DPRGTYQCQGAKETSNP 179 (186)
T ss_dssp CSSC-------CSSCCEEEETTS-CCEEEEEEEESSCEEEE
T ss_pred ccCC-------CcceEEECCCCc-CcCEEEEEEEEcCcCCc
Confidence 3322 334689999999 99999999999998865
|
| >1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 | Back alignment and structure |
|---|
Probab=99.46 E-value=1.7e-12 Score=123.20 Aligned_cols=184 Identities=18% Similarity=0.107 Sum_probs=117.9
Q ss_pred ccccCCceEEEEEEEEccCCCC--Cceecccccc-c-----------------------ceEEEEE--ecceeeEEEccC
Q psy7039 236 NNVHEGKAYEYRVSAVNAAGTE--KPKISLDALI-G-----------------------KRIKEFV--TSTTASLNIKNS 287 (516)
Q Consensus 236 ~~l~~g~~~~~~~~~~~~~g~p--~p~i~W~~~~-~-----------------------~~~~~~~--~~~~~~l~i~~l 287 (516)
..+.+|+.+.+.|.+ .|.+ .+.+.|.+.. + .++.+.. ......|.|.++
T Consensus 36 ~~v~~G~~v~L~C~~---~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v 112 (282)
T 1qok_A 36 ELVRSGTSVKLSCTA---SGFNIKDSYMHWLRQGPEQGLEWIGWIDPENGDTEYAPKFQGKATFTTDTSSNTAYLQLSSL 112 (282)
T ss_dssp EEEETTCCEEEEEEE---ESSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEECSC
T ss_pred EEEeCCCeEEEEEec---cCCCCCCceEEEEEeCCCCCcEEEEEEecCCCccccCchhcCcEEEEEecCCCeEEEEECcC
Confidence 356789999999997 5553 5789996521 1 1222222 123578999999
Q ss_pred CCCCceEEEEEEEecCCC-----cceeEEEEEecCCCCCC-CCceeeeccCCeeEEEecCCCCCCCCceeeccccccccc
Q psy7039 288 VRKDSGIYKIEAKNDYGI-----DMADIEVVVVSKPGPPT-GPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLS 361 (516)
Q Consensus 288 ~~~d~g~y~c~a~n~~g~-----~~~~~~l~v~~~p~~p~-~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~ 361 (516)
+.+|+|.|+|.+.|..|. ......|.|...+.... .++.. .+.++ .+ ...
T Consensus 113 ~~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~~~~~~~~~~~~----------~~~~~------~~--------~~~ 168 (282)
T 1qok_A 113 TSEDTAVYYCNEGTPTGPYYFDYWGQGTTVTVSSGGGGSGGGGSGG----------GGSEN------VL--------TQS 168 (282)
T ss_dssp CGGGCEEEEEEEECSSSSCCCEEECCCEEEEEEC-------------------------CC------CE--------EEE
T ss_pred ChhhCEEEEEEeccCCCccceeeeCCCEEEEEecCCcccCCccCCC----------Cccce------EE--------ecC
Confidence 999999999999998762 11234677765542100 00000 00000 00 012
Q ss_pred cccEEEEcCCeEEEEEEEeeecCCceEEEE--CCeecC------------CCCceEEEEcCCeEEEEEcCceecCCceEE
Q psy7039 362 IRDMTVLAGEEFTITVPFSGRPKPTPIWTV--NGDEVS------------PDGRIKFETSENQTIYRNKSAKRATDSGSY 427 (516)
Q Consensus 362 ~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~--~~~~l~------------~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y 427 (516)
+....+.+|+.+.|.|.+.+.+ +.+.|++ ++..+. ...++..........|+|.++.. .|+|.|
T Consensus 169 p~~~~v~~G~~v~L~C~~~~~~-~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~-~DsG~Y 246 (282)
T 1qok_A 169 PAIMSASPGEKVTITCSASSSV-SYMHWFQQKPGTSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISRMEA-EDAATY 246 (282)
T ss_dssp CSEEEECTTCCEEEEEEESSCC-SCCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCG-GGCEEE
T ss_pred CCEEEEcCCCcEEEEEEecCCC-ceEEEEEECCCCCcEEEEEEecCCCCcccCCeEEecCCCEEEEEEccCCh-hHCEEE
Confidence 3456788999999999999998 8999999 454331 23566666556677899999999 999999
Q ss_pred EEEEEcCCCc-eeEEEEEEEec
Q psy7039 428 TIQLVNTVGS-DSASCKVYVVD 448 (516)
Q Consensus 428 ~c~a~n~~G~-~s~s~~l~v~~ 448 (516)
+|.|.|..+. -.....|.|..
T Consensus 247 ~C~a~~~~~~~fg~gt~l~V~~ 268 (282)
T 1qok_A 247 YCQQRSSYPLTFGAGTKLELKR 268 (282)
T ss_dssp EEEECSSSSCEECCCEEEEEC-
T ss_pred EEEEeeCCCceEeCCEEEEEec
Confidence 9999986433 23345677764
|
| >1bpv_A Titin, A71, connectin; fibronectin type III; NMR {Homo sapiens} SCOP: b.1.2.1 | Back alignment and structure |
|---|
Probab=99.45 E-value=1.6e-13 Score=110.42 Aligned_cols=95 Identities=35% Similarity=0.531 Sum_probs=80.3
Q ss_pred CCCCCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCC-CeEEeEEeecCCcEEEeCCCcCCCeEEEEEEEe
Q psy7039 12 DEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTG-NWEKAVVVPAGETSCTVPGLIEGETYQFQVRAV 90 (516)
Q Consensus 12 ~~p~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~-~~~~~~~~~~~~~~~~i~~l~~~~~y~~~~~a~ 90 (516)
.+|.+|..+++..+++++|.|+|.+|..++|.+|.+|.|+++..+. .|..+.......+++++.+|+++..|.|+|+|.
T Consensus 9 ~~p~~P~~P~v~~v~~~sv~L~W~~P~~~gg~~i~~Y~Ve~~~~~~~~w~~~~~~~~~~~~~~v~~L~p~t~Y~frV~A~ 88 (112)
T 1bpv_A 9 SPIDPPGKPVPLNITRHTVTLKWAKPEYTGGFKITSYIVEKRDLPNGRWLKANFSNILENEFTVSGLTEDAAYEFRVIAK 88 (112)
T ss_dssp CCCCCCCCCEEEEEETTEEEEECCCCSCCTTCCCSCCEEEEEETTSCCCEECCCSCCCSSEEEECSCCSSCCEEEEEEEE
T ss_pred CCCCCCCCCEEEEeeCCEEEEEECCCCcCCCCcccEEEEEEEECCCCceEEeecccCccCEEEECCCCCCCEEEEEEEEE
Confidence 4678888888899999999999998887888999999999998655 898776555568899999999999999999999
Q ss_pred cCCCC-CCCCCCCcceE
Q psy7039 91 NAAGP-GEASKPTAPIV 106 (516)
Q Consensus 91 n~~g~-~~~s~~~~~~~ 106 (516)
|..|. +.++.....++
T Consensus 89 N~~G~~s~~S~~~~~~t 105 (112)
T 1bpv_A 89 NAAGAISPPSEPSDAIT 105 (112)
T ss_dssp CTTSCEEEEEEEEEEEC
T ss_pred ECCCCCCCCCCCCCCEE
Confidence 99996 87765444333
|
| >1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.45 E-value=1e-12 Score=121.67 Aligned_cols=170 Identities=12% Similarity=0.032 Sum_probs=115.2
Q ss_pred cccCCceEEEEEEEEccCCCCCceecccccccceEEEE-----EecceeeEEEccCCCCCceEEEEEEEecCCC--ccee
Q psy7039 237 NVHEGKAYEYRVSAVNAAGTEKPKISLDALIGKRIKEF-----VTSTTASLNIKNSVRKDSGIYKIEAKNDYGI--DMAD 309 (516)
Q Consensus 237 ~l~~g~~~~~~~~~~~~~g~p~p~i~W~~~~~~~~~~~-----~~~~~~~l~i~~l~~~d~g~y~c~a~n~~g~--~~~~ 309 (516)
.+.+|+.+.|.|.+ .+ +.+.+.|.+... ..... .......|.|.+++.+|+|.|+|.+.|..+. .+..
T Consensus 17 ~v~~G~~VtL~C~~---~~-~~~~~~w~k~g~-~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~s~~S~~ 91 (242)
T 1p6f_A 17 MVPKEKQVTICCQG---NY-GAVEYQLHFEGS-LFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCIYRVGELWSEPSNL 91 (242)
T ss_dssp EEETTCCEEEEEEC---CT-TCCEEEEEETTE-EEEEECCSSCTTCCEEEEEECSCCGGGCEEEEEEEEETTEECCCCCC
T ss_pred ccCCCCcEEEEEee---CC-CCcEEEEEECCC-ccccccccccCCcceeEEEecCCCcccCeEEEEEEecCCccccCCcc
Confidence 46789999999997 33 356777865321 11111 1235678999999999999999999886443 3455
Q ss_pred EEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeeecCCceEE
Q psy7039 310 IEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIW 389 (516)
Q Consensus 310 ~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W 389 (516)
+.|.|......|. +. ......+.+|+.++|.|.+.+. .+.+.|
T Consensus 92 ~~L~V~~~~~~P~--i~----------------------------------~~p~~~v~~G~~vtL~C~~~~~-~~~~~w 134 (242)
T 1p6f_A 92 LDLVVTEMYDTPT--LS----------------------------------VHPGPEVISGEKVTFYCRLDTA-TSMFLL 134 (242)
T ss_dssp EEEEEECCSCCCE--EE----------------------------------EESCSEEETTCEEEEEEECTTS-CSEEEE
T ss_pred eEEEeecccCCCc--eE----------------------------------ccCCCccCCCCcEEEEEecCCC-CCEEEE
Confidence 6777765332221 00 0112357899999999998764 458999
Q ss_pred EECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCC---CceeEEEEEEEecCCCCC
Q psy7039 390 TVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTV---GSDSASCKVYVVDKPSPP 453 (516)
Q Consensus 390 ~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~---G~~s~s~~l~v~~~p~~P 453 (516)
+++|..+.. ..........|.|.++.. .|+|.|+|.|.|.. ...+....|.|...+..|
T Consensus 135 ~k~g~~~~~----~~~~~~~~~~l~I~~v~~-~d~G~Y~C~a~n~~~~~s~~S~~~~l~V~~~~~~P 196 (242)
T 1p6f_A 135 LKEGRSSHV----QRGYGKVQAEFPLGPVTT-AHRGTYRCFGSYNNHAWSFPSEPVKLLVTGDIENT 196 (242)
T ss_dssp EECSSSCEE----EEEECSSEEEEEEEECCG-GGCEEEEEEEEEETTEECCCCCCEEEEEEC-----
T ss_pred EECCCccCc----cccCCCceEEEEeCCCcc-ccCEEEEEEEECCCCcccCCCCCEEEEEeccCCCC
Confidence 999875532 122345567899999999 99999999999874 235667889998766665
|
| >3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA, IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB: 3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A | Back alignment and structure |
|---|
Probab=99.45 E-value=2.3e-12 Score=120.53 Aligned_cols=174 Identities=16% Similarity=0.148 Sum_probs=110.0
Q ss_pred CcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecC--cCceeeEEeeCC--ee--e-----------
Q psy7039 119 STLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLS--EPFLNHGWSING--QV--C----------- 181 (516)
Q Consensus 119 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~p~~~i~W~~~~--~~--~----------- 181 (516)
..+..+.+.+|+++.|.|.+. + .+.+.+.|++.. .. +
T Consensus 13 ~~p~~~~v~~G~~v~L~C~~~--------------------------~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~ 66 (257)
T 3gkz_A 13 QESGPSLVKPSQTLSLTCSVT--------------------------GDSVTSGYWSWIRQFPGNKLDYMGYISYRGSTY 66 (257)
T ss_dssp EEECCSEECTTCCEEEEEEEE--------------------------ESCCSSCEEEEEEECTTSCEEEEEEEETTCCEE
T ss_pred ECCCCeEEcCCCcEEEEEEEE--------------------------cccccceEEEEEEECCCCCcEEEEEEecCCcEE
Confidence 455667799999999999998 4 235667777621 11 1
Q ss_pred ---ccCCceEEeec--CCeeEEEeccCCCCCCeeEEEEEEcCCCce------EEEEEeece---------------ee--
Q psy7039 182 ---QIGGRADVQTT--KSETVLDIPFCSRSDTGHYSLTLENNLGTA------TASAHVTGT---------------EF-- 233 (516)
Q Consensus 182 ---~~~~~~~~~~~--~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~------~~~~~~~~~---------------~~-- 233 (516)
....|+.+... ....+|.|.+++.+|+|.|.|.+.+..+.. ...+.+... .+
T Consensus 67 ~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~n~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~ 146 (257)
T 3gkz_A 67 YNPSLKSRISITRDTSKNQVYLQLKSVSSEDTATYYCSYFDSDDYAMEYWGQGTSVTVSGGGGSGGGGSGGGGSQIVLTQ 146 (257)
T ss_dssp ECTTTTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEECTTCTTCEEECCCEEEEEC---------CTTCCCCCCEEC
T ss_pred ecccccccEEEEEecCCceEEEEECCCChhhCEEEEEEEecCCCcceeEEcCCEEEeecCchhhcccccCCCccceEEEc
Confidence 11245555532 345689999999999999999999862111 111222211 11
Q ss_pred --eeccccCCceEEEEEEEEccCCCCCc-eecccccc-c------------------ceEEEEEecceeeEEEccCCCCC
Q psy7039 234 --TDNNVHEGKAYEYRVSAVNAAGTEKP-KISLDALI-G------------------KRIKEFVTSTTASLNIKNSVRKD 291 (516)
Q Consensus 234 --~~~~l~~g~~~~~~~~~~~~~g~p~p-~i~W~~~~-~------------------~~~~~~~~~~~~~l~i~~l~~~d 291 (516)
....+.+|+.+.|.|.+ .+.+.+ .+.|.+.. + .++..........|.|.+++.+|
T Consensus 147 ~p~~~~v~~G~~v~L~C~~---~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D 223 (257)
T 3gkz_A 147 SPAIMSASPGEKVTLTCSA---SSSVSSSHLYWYQQKPGSSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISSMEAED 223 (257)
T ss_dssp SCSEEEECTTCCEEEEEEE---SSCCCGGGEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGG
T ss_pred CCceEEEeCCCcEEEEEEE---ccCccceEEEEEEECCCCCcEEEEEEccccCCCcCCCEEEecCCCEEEEEECCCChHH
Confidence 12456789999999998 666766 89996521 1 22233334456679999999999
Q ss_pred ceEEEEEEEecCCCc-ceeEEEEEecCCCCC
Q psy7039 292 SGIYKIEAKNDYGID-MADIEVVVVSKPGPP 321 (516)
Q Consensus 292 ~g~y~c~a~n~~g~~-~~~~~l~v~~~p~~p 321 (516)
+|.|+|.|.+..... -.-..|.|...+..|
T Consensus 224 ~G~Y~C~~~~~~~~~fg~gt~l~v~~~~~~~ 254 (257)
T 3gkz_A 224 AASYFCHQWSSFPFTFGSGTKLEIKRAPHHH 254 (257)
T ss_dssp CEEEEEEECSSSSCEECCCEEEEECCC----
T ss_pred CEEEEEEEccCCceEEcCCEEEEEEeCCCCC
Confidence 999999998754322 112456665554443
|
| >2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A | Back alignment and structure |
|---|
Probab=99.45 E-value=7.8e-13 Score=119.81 Aligned_cols=167 Identities=15% Similarity=0.134 Sum_probs=107.1
Q ss_pred CcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCc-------CceeeEEeeCCeee----------
Q psy7039 119 STLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSE-------PFLNHGWSINGQVC---------- 181 (516)
Q Consensus 119 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------p~~~i~W~~~~~~~---------- 181 (516)
..+..+.+.+|+.+.|.|.+. +. +.+.+.|++++...
T Consensus 5 ~~p~~v~v~~G~~v~L~C~~~--------------------------~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~ 58 (214)
T 2zg1_A 5 QVQKSVTVQEGLCVLVPCSFS--------------------------YPWRSWYSSPPLYVYWFRDGEIPYYAEVVATNN 58 (214)
T ss_dssp ECCSEEEEETTCCEEECCEEE--------------------------CCCCCCSCCCCEEEEEEETTCCGGGCCBSEESC
T ss_pred eCCcEEEEecCccEEEeeeee--------------------------cCCcccCCCCceEEEEEecCCCCcccceEecCC
Confidence 345668899999999999988 33 56789999875421
Q ss_pred -------ccCCceEEeec--CCeeEEEeccCCCCCCeeEEEEEEcCCCce------EEEEEeece----ee-eeccccCC
Q psy7039 182 -------QIGGRADVQTT--KSETVLDIPFCSRSDTGHYSLTLENNLGTA------TASAHVTGT----EF-TDNNVHEG 241 (516)
Q Consensus 182 -------~~~~~~~~~~~--~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~------~~~~~~~~~----~~-~~~~l~~g 241 (516)
....|+.+... ....+|.|.+++.+|+|.|.|.+.+..+.. ...+.+... .+ ....+.+|
T Consensus 59 ~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~p~i~~~~~~~~G 138 (214)
T 2zg1_A 59 PDRRVKPETQGRFRLLGDVQKKNCSLSIGDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTALIEKPDIHFLEPLESG 138 (214)
T ss_dssp TTSCBCTTTTTTEEECSCGGGTBCCEEECSCCGGGCEEEEEEEEETTTEEEECCSSCEEEEEECCCCCCEEC--CCCCTT
T ss_pred cccccCccccCceEEeccCCCCeEEEEEccCCHhhCceEEEEEEcCCCceeeecCCceEEEEecCCCCCceecCccccCC
Confidence 01245554322 235689999999999999999999875322 112222211 11 12246789
Q ss_pred ceEEEEEEEEcc-CCCCCceecccccccceEEEEEecceeeEEEccCCCCCceEEEEEEEecCCCcceeEEE
Q psy7039 242 KAYEYRVSAVNA-AGTEKPKISLDALIGKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEV 312 (516)
Q Consensus 242 ~~~~~~~~~~~~-~g~p~p~i~W~~~~~~~~~~~~~~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~~~~l 312 (516)
+.+.+.|.+... .|.|.|.+.|.+....... ........|.|..+..+|.|.|+|.|.|..+.......+
T Consensus 139 ~~v~L~C~~~~~~~~~p~p~v~W~~~~~~~~~-~~~~~~~~L~i~~~~~~~~g~Y~C~a~n~~~~~~~~~~v 209 (214)
T 2zg1_A 139 RPTRLSCSLPGSCEAGPPLTFSWTGNALSPLD-PETTRSSELTLTPRPEDHGTNLTCQMKRQGAQVTTERTV 209 (214)
T ss_dssp CCEEEEEECTTCCSCSSCCEEEEESSTTSSSC-SSCCCSSEEEECCCTTCCSCEEEEEEECC----CCEEEE
T ss_pred CeEEEEEEeccCCCCCCCceEEEeCCCCccCC-CCceeEEEEEEecccHHcCcEEEEEEEeCCCCcceEEEE
Confidence 999999998211 1248899999763221100 001356789999999999999999999986554433333
|
| >3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A | Back alignment and structure |
|---|
Probab=99.45 E-value=4.5e-13 Score=116.66 Aligned_cols=152 Identities=14% Similarity=0.087 Sum_probs=108.6
Q ss_pred cccCCceEEEEEEEEccCCCC-CceecccccccceEEEEEecceeeEEEccCCCCCceEEEEEEEecCCCcceeEEEEEe
Q psy7039 237 NVHEGKAYEYRVSAVNAAGTE-KPKISLDALIGKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVV 315 (516)
Q Consensus 237 ~l~~g~~~~~~~~~~~~~g~p-~p~i~W~~~~~~~~~~~~~~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~~~~l~v~ 315 (516)
.+.+|+.+.+.|.+ .+.+ .+.+.|.+... ........+.+.++..+|+|.|+|.+.|..+. ..+.|.|.
T Consensus 15 ~v~~G~~v~l~C~~---~~~p~~~~~~W~~~g~-----~~~~~~~~~~~~~~~~~d~G~Y~C~~~~~~~s--~~~~l~v~ 84 (170)
T 3ry4_A 15 NVLQEDSVTLTCQG---ARSPESDSIQWFHNGN-----LIPTHTQPSYRFKANNNDSGEYTCQTGQTSLS--DPVHLTVL 84 (170)
T ss_dssp EEETTCEEEEEEES---CCCSSSSCEEEEETTE-----ECTTCCSSEEEEECCGGGCEEEEEEETTSBCC--CCEEEEEE
T ss_pred EEECCCcEEEEEEe---cCCCCcceEEEEECCe-----EcccCccceEEEecccccCeEEEEEEeCCCce--EeEEEEEE
Confidence 46789999999998 6655 67899965211 11223456778899999999999999875433 34566665
Q ss_pred cCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEe-eecCCceEEEECCe
Q psy7039 316 SKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFS-GRPKPTPIWTVNGD 394 (516)
Q Consensus 316 ~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~-g~p~~~i~W~~~~~ 394 (516)
..+... ......+..|+.+.|.|.+. +.|.+.+.|++++.
T Consensus 85 ~~~~~~---------------------------------------~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~ 125 (170)
T 3ry4_A 85 FEWLVL---------------------------------------QTPHLEFQEGETIMLRCHSWKDKPLVKVTFFQNGK 125 (170)
T ss_dssp CCSEEE---------------------------------------ECSCSEECTTCCEEEEEEEGGGCCEEEEEEEETTE
T ss_pred CCceEe---------------------------------------cCCCceeecCCeEEEEEECCCCCCCceEEEEECCe
Confidence 532110 11223567899999999995 45668999999987
Q ss_pred ecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCc-eeEEEEEEE
Q psy7039 395 EVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGS-DSASCKVYV 446 (516)
Q Consensus 395 ~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~-~s~s~~l~v 446 (516)
.+.. ......|.|.++.. .|.|.|+|.|.|..|. .+..+.|.|
T Consensus 126 ~~~~--------~~~~~~L~i~~v~~-~d~G~Y~C~a~n~~g~~~s~~~~l~V 169 (170)
T 3ry4_A 126 SQKF--------SHLDPTFSIPQANH-SHSGDYHCTGNIGYTLFSSKPVTITV 169 (170)
T ss_dssp EEEE--------ESSCCEEEESSCCG-GGCEEEEEEEEETTEEEECCCEEEEE
T ss_pred Eccc--------cCCCCeEEEEeccc-cCCEEEEEEEEeCcCccccccEEEEE
Confidence 6431 12334699999999 9999999999999987 455566665
|
| >1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A | Back alignment and structure |
|---|
Probab=99.45 E-value=1.1e-12 Score=115.71 Aligned_cols=158 Identities=13% Similarity=0.119 Sum_probs=105.4
Q ss_pred ccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEee--CCeee----------ccCCceE
Q psy7039 121 LNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSI--NGQVC----------QIGGRAD 188 (516)
Q Consensus 121 ~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~--~~~~~----------~~~~~~~ 188 (516)
...+....|+++.|.|... ..+.+.+.|.|++ ++..+ ....|+.
T Consensus 6 ~~~v~g~~G~sv~L~~~~~------------------------~~~~~~~~i~W~k~~~~~~i~~~~~~~~~~~~~~R~~ 61 (182)
T 1hnf_A 6 ALETWGALGQDINLDIPSF------------------------QMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYK 61 (182)
T ss_dssp CEEEEEETTSCEEECCTTC------------------------CCCSSEEEEEEEEGGGCCEEEEECGGGCEEESCTTEE
T ss_pred ccEEEEecCCCEEEeCCcc------------------------cccCcCCEEEEEECCCCcEEEEEeCccCCCCCCCeEE
Confidence 4557788999999999553 0035678999999 88766 2345666
Q ss_pred EeecCCeeEEEeccCCCCCCeeEEEEEEcCCCceEE--EEEeeceeee-eccc-cCCceEEEEEEEEccCCCCCceeccc
Q psy7039 189 VQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATA--SAHVTGTEFT-DNNV-HEGKAYEYRVSAVNAAGTEKPKISLD 264 (516)
Q Consensus 189 ~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~--~~~~~~~~~~-~~~l-~~g~~~~~~~~~~~~~g~p~p~i~W~ 264 (516)
+.. +.+|.|.+++.+|+|.|+|.+.|..|.... ...+.+.... ...+ ..+..+.|.|.+ .+.|.|.+.|.
T Consensus 62 ~~~---ngsL~I~~v~~~DsG~Y~c~~~n~~g~~~~~~~~~L~V~~~~~~P~i~~~~~~v~L~C~~---~~~p~~~~~W~ 135 (182)
T 1hnf_A 62 LFK---NGTLKIKHLKTDDQDIYKVSIYDTKGKNVLEKIFDLKIQERVSKPKISWTCINTTLTCEV---MNGTDPELNLY 135 (182)
T ss_dssp ECT---TSCEEECSCCGGGCEEEEEEEEETTSCEEEEEEEEEEEECCCCCCEEEEETTTTEEEEEC---SSCSSCEEEEE
T ss_pred ECC---CCCEEECCCChhhCEEEEEEEEeCCCceeEEEEEEEEEcCcCCCCEEEEccCcEEEEeEc---cCCCCCEEEEE
Confidence 542 348999999999999999999998877543 2222222110 0001 123357888887 77789999997
Q ss_pred ccccceEEEEEecceeeEEEccCCCCCceEEEEEEEecCCCcceeEEEEE
Q psy7039 265 ALIGKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVV 314 (516)
Q Consensus 265 ~~~~~~~~~~~~~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~~~~l~v 314 (516)
+... .. ......+.+.. ...|.|.|+|.|.|..+.......+.+
T Consensus 136 ~~g~-~l----~~~~~~i~~~~-~~~d~G~Y~C~a~N~~~~~~s~~~~~c 179 (182)
T 1hnf_A 136 QDGK-HL----KLSQRVITHKW-TTSLSAKFKCTAGNKVSKESSVEPVSC 179 (182)
T ss_dssp ESSC-EE----EEESSCEEEEC-CSCEEEEEEEEEECSSCEEEEEEEEEE
T ss_pred ECCE-EC----CCCCcEEEEec-ccCCCcEEEEEEEeCCCCcEEcceecC
Confidence 6322 22 11233344433 478999999999999998776665544
|
| >3knb_A Titin; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T* | Back alignment and structure |
|---|
Probab=99.45 E-value=1.4e-12 Score=102.75 Aligned_cols=87 Identities=28% Similarity=0.562 Sum_probs=77.8
Q ss_pred ccccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCC--CceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCce
Q psy7039 361 SIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPD--GRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSD 438 (516)
Q Consensus 361 ~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~--~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~ 438 (516)
.+.++.+.+|+.+.|.|.+.|.|.|.+.|++++..+... .++.+...++...|.|.++.. .|+|.|+|.|.|..|..
T Consensus 11 ~p~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~~L~I~~~~~-~D~G~Y~C~a~N~~G~~ 89 (100)
T 3knb_A 11 LPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTTLIIMDVQK-QDGGLYTLSLGNEFGSD 89 (100)
T ss_dssp CCSEEEEETTSEEEEEEEEEEESCCEEEEEETTEECCTTGGGTEEEEECSSEEEEEESSCCG-GGCEEEEEEEEETTEEE
T ss_pred CCCcEEEeCCCeEEEEEEEEEecCCEEEEEECceEeeeeccceeeeecccceEEEEEcCCCc-cCCEEEEEEEEECCCEE
Confidence 456788999999999999999999999999999988643 467777778888999999999 99999999999999999
Q ss_pred eEEEEEEEec
Q psy7039 439 SASCKVYVVD 448 (516)
Q Consensus 439 s~s~~l~v~~ 448 (516)
+.++.|.|+.
T Consensus 90 ~~~~~l~V~~ 99 (100)
T 3knb_A 90 SATVNIHIRS 99 (100)
T ss_dssp EEEEEEEEEC
T ss_pred EEEEEEEEEE
Confidence 9999998864
|
| >1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.44 E-value=1.8e-12 Score=120.00 Aligned_cols=176 Identities=10% Similarity=0.044 Sum_probs=114.8
Q ss_pred CCCccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEee
Q psy7039 112 LAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQT 191 (516)
Q Consensus 112 ~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~ 191 (516)
.+|.|. ..+.. .+.+|+.++|.|.+. + +...+.|++++..+..... ....
T Consensus 6 ~kP~i~-~~P~~-~v~~G~~VtL~C~~~--------------------------~-~~~~~~w~k~g~~~~~~~~-~~~~ 55 (242)
T 1p6f_A 6 PKPFIW-AEPHF-MVPKEKQVTICCQGN--------------------------Y-GAVEYQLHFEGSLFAVDRP-KPPE 55 (242)
T ss_dssp CCCEEE-EESCS-EEETTCCEEEEEECC--------------------------T-TCCEEEEEETTEEEEEECC-SSCT
T ss_pred CCCEEE-eeCCC-ccCCCCcEEEEEeeC--------------------------C-CCcEEEEEECCCccccccc-cccC
Confidence 356665 33333 789999999999987 4 3468999999876642100 0011
Q ss_pred cCCeeEEEeccCCCCCCeeEEEEEEcCCCce----EEEEEeec----eee---eeccccCCceEEEEEEEEccCCCCCce
Q psy7039 192 TKSETVLDIPFCSRSDTGHYSLTLENNLGTA----TASAHVTG----TEF---TDNNVHEGKAYEYRVSAVNAAGTEKPK 260 (516)
Q Consensus 192 ~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~----~~~~~~~~----~~~---~~~~l~~g~~~~~~~~~~~~~g~p~p~ 260 (516)
......|.|.+++.+|+|.|+|.+.+..+.. ...+.+.. ..+ ....+.+|+.+.|.|.+ .+ +.+.
T Consensus 56 ~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~s~~S~~~~L~V~~~~~~P~i~~~p~~~v~~G~~vtL~C~~---~~-~~~~ 131 (242)
T 1p6f_A 56 RINKVKFYIPDMNSRMAGQYSCIYRVGELWSEPSNLLDLVVTEMYDTPTLSVHPGPEVISGEKVTFYCRL---DT-ATSM 131 (242)
T ss_dssp TCCEEEEEECSCCGGGCEEEEEEEEETTEECCCCCCEEEEEECCSCCCEEEEESCSEEETTCEEEEEEEC---TT-SCSE
T ss_pred CcceeEEEecCCCcccCeEEEEEEecCCccccCCcceEEEeecccCCCceEccCCCccCCCCcEEEEEec---CC-CCCE
Confidence 3346789999999999999999998753321 22222221 111 12346789999999987 44 3468
Q ss_pred ecccccccc-eEEEEEecceeeEEEccCCCCCceEEEEEEEecC---CCcceeEEEEEecCCCCC
Q psy7039 261 ISLDALIGK-RIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDY---GIDMADIEVVVVSKPGPP 321 (516)
Q Consensus 261 i~W~~~~~~-~~~~~~~~~~~~l~i~~l~~~d~g~y~c~a~n~~---g~~~~~~~l~v~~~p~~p 321 (516)
+.|.+.... ............|.|.+++.+|+|.|+|.+.|.. ...+..+.|.|...+..|
T Consensus 132 ~~w~k~g~~~~~~~~~~~~~~~l~I~~v~~~d~G~Y~C~a~n~~~~~s~~S~~~~l~V~~~~~~P 196 (242)
T 1p6f_A 132 FLLLKEGRSSHVQRGYGKVQAEFPLGPVTTAHRGTYRCFGSYNNHAWSFPSEPVKLLVTGDIENT 196 (242)
T ss_dssp EEEEECSSSCEEEEEECSSEEEEEEEECCGGGCEEEEEEEEEETTEECCCCCCEEEEEEC-----
T ss_pred EEEEECCCccCccccCCCceEEEEeCCCccccCEEEEEEEECCCCcccCCCCCEEEEEeccCCCC
Confidence 888653221 1122234567899999999999999999999864 234556788887755444
|
| >3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=3.1e-12 Score=118.99 Aligned_cols=154 Identities=13% Similarity=0.143 Sum_probs=108.0
Q ss_pred CcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCC--ee------------eccC
Q psy7039 119 STLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSING--QV------------CQIG 184 (516)
Q Consensus 119 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~--~~------------~~~~ 184 (516)
..+..+.+.+|+.+.|.|.+. +.|.+.+.|++.. .. ....
T Consensus 9 ~~p~~~~v~~G~~v~L~C~~~--------------------------~~~~~~i~W~k~~~~~~~~~l~~~~~~~~~~~~ 62 (250)
T 3esu_F 9 QSTSSLSASLGDRVTISCRAS--------------------------QDIRNYLNWYQQKPDGTVKLLIYYTSRLQSGVP 62 (250)
T ss_dssp CSCSEEEECTTCCEEEEEEES--------------------------SCCTTCEEEEEECTTSCEEEEEETTTEECTTCC
T ss_pred ecCCEEEeeCCCcEEEEEEec--------------------------ccCCceEEEEEECCCCCCEEEEEEeCCCCCCCC
Confidence 455678899999999999999 8888899998842 11 0113
Q ss_pred CceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCceE---EEEEeec------------------------eeeeecc
Q psy7039 185 GRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTAT---ASAHVTG------------------------TEFTDNN 237 (516)
Q Consensus 185 ~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~---~~~~~~~------------------------~~~~~~~ 237 (516)
.|+.....+...+|.|.+++.+|+|.|.|.+.|..+... ..+.+.. .......
T Consensus 63 ~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (250)
T 3esu_F 63 SRFSGSGSGTDYSLTISNLEQEDIGTYFCQQGNTLPWTFGGGTKLEIRRGGGGSGGGGSGGGGSGGGGSEVQLQQSGPEL 142 (250)
T ss_dssp TTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEC------------------------CEECCCEE
T ss_pred CCEEEeCCCCEEEEEEccCChhhCEEEEEEEeeCCCceECCCEEEEEECCCCcccccccccccccCcccceEEecCCceE
Confidence 566666666677999999999999999999988654321 1122211 0112234
Q ss_pred ccCCceEEEEEEEEccCCCC--Cceecccccc-c-----------------------ceEEEEE--ecceeeEEEccCCC
Q psy7039 238 VHEGKAYEYRVSAVNAAGTE--KPKISLDALI-G-----------------------KRIKEFV--TSTTASLNIKNSVR 289 (516)
Q Consensus 238 l~~g~~~~~~~~~~~~~g~p--~p~i~W~~~~-~-----------------------~~~~~~~--~~~~~~l~i~~l~~ 289 (516)
+.+|+.+.|.|.+ .|.+ .+.+.|.+.. + .++.+.. ......|.|.+++.
T Consensus 143 v~~G~~v~L~C~~---~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~ 219 (250)
T 3esu_F 143 VKPGASVKISCKD---SGYAFSSSWMNWVKQRPGQGPEWIGRIYPGDGDTNYNGKFKGKATLTADKSSSTAYMQLSSLTS 219 (250)
T ss_dssp ECTTCCEEEEEEC---CSTTGGGSEEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCCG
T ss_pred EcCCceEEEEEEe---cCCcccCCEEEEEEECCCCCcEEEEEEeccCCccccCccccceEEEEecCCCCeEEEEECCCCc
Confidence 6789999999998 6655 7889996531 1 1112211 13445799999999
Q ss_pred CCceEEEEEEEe
Q psy7039 290 KDSGIYKIEAKN 301 (516)
Q Consensus 290 ~d~g~y~c~a~n 301 (516)
+|+|.|+|.|.+
T Consensus 220 ~DsG~Y~C~~~~ 231 (250)
T 3esu_F 220 VDSAVYFCARSG 231 (250)
T ss_dssp GGCEEEEEEEEC
T ss_pred ccCEEEEEEEec
Confidence 999999999997
|
| >2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A | Back alignment and structure |
|---|
Probab=99.44 E-value=2.6e-13 Score=131.62 Aligned_cols=203 Identities=9% Similarity=-0.028 Sum_probs=123.2
Q ss_pred EEEeCCCcCCCeEEEEEEEecCCCCCCCCCCCcceEeccCCCCCccccCcccceEEecCCeEEEEEeeeeccccccCccc
Q psy7039 71 SCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLR 150 (516)
Q Consensus 71 ~~~i~~l~~~~~y~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~ 150 (516)
.|.|...+..|.+.|+|+|.|..+..... ...........|.+....+....+.+|+.+.|.|.+.
T Consensus 73 ~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~---~~~~~~~~~~~p~v~~~~p~~~~v~~G~~v~L~C~~~----------- 138 (323)
T 2wqr_A 73 ELTLSQKHWLSDRTYTCQVTYQGHTFEDS---TKKCADSNPRGVSAYLSRPSPFDLFIRKSPTITCLVV----------- 138 (323)
T ss_dssp EEEEEHHHHHTTCCEEEEEEETTEEEEEE---ECCCCCSSGGGCEEEECCCCHHHHHTSSCCEEEEEEE-----------
T ss_pred EEEEcHHHcCCCCcEEEEEEeCCCCccee---eecCCCCCCCCCEEEEcCCCHHHhccCCeEEEEEEEe-----------
Confidence 46777766778999999999876532110 0000011112333332444455678899999999998
Q ss_pred cccccccCccceeecCc-Cce---eeEEeeCC-eeeccCCceEE-eecC---CeeEEEeccCCCCCCeeEEEEEEcCCCc
Q psy7039 151 ALGVRANSTKGWVKLSE-PFL---NHGWSING-QVCQIGGRADV-QTTK---SETVLDIPFCSRSDTGHYSLTLENNLGT 221 (516)
Q Consensus 151 ~~~~~~~~~~~~~~~~~-p~~---~i~W~~~~-~~~~~~~~~~~-~~~~---~~~~l~i~~~~~~d~g~Y~c~~~~~~g~ 221 (516)
+. |.+ .|.|++++ ..+........ ...+ ..+.|.|.+++.+|+|.|+|.+.|..+.
T Consensus 139 ---------------g~~P~p~~~~i~W~k~~g~~~~~~~~~~~~~~~g~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~~~ 203 (323)
T 2wqr_A 139 ---------------DLAPSKGTVQLTWSRASGKPVNHSTRKEEKQRNGTLTVTSTLPVGTRDWIEGETYQCRVTHPHLP 203 (323)
T ss_dssp ---------------EECCCSSCCEEEEEETTCCCCCCCCCEEEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECTTSS
T ss_pred ---------------ccCCCCCceEEEEEECCCcccccccCCCccCCCCCEEEEEEEEECHHHccCCCCEEEEEECCCCC
Confidence 64 445 89999964 43332221111 1111 2457999999999999999999997644
Q ss_pred eEEEEEee-------ceeee----eccccCCceEEEEEEEEccCC-CCC-ceecccccc----cceEEE---EEe-----
Q psy7039 222 ATASAHVT-------GTEFT----DNNVHEGKAYEYRVSAVNAAG-TEK-PKISLDALI----GKRIKE---FVT----- 276 (516)
Q Consensus 222 ~~~~~~~~-------~~~~~----~~~l~~g~~~~~~~~~~~~~g-~p~-p~i~W~~~~----~~~~~~---~~~----- 276 (516)
......+. ...+. ......|....|.|.+ .| .|+ +.+.|.+.. ...... ...
T Consensus 204 ~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~g~~~~l~C~~---~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~g~~ 280 (323)
T 2wqr_A 204 RALMRSTTKTSGPRAAPEVYAFATPEWPGSRDKRTLACLI---QNFMPEDISVQWLHNEVQLPDARHSTTQPRKTKGSGF 280 (323)
T ss_dssp SCEEEEECCCCSCCBCCEEEEEECCCCTTCTTEEEEEEEE---EEEBSSCCEEEEEETTEECCGGGEEECCCEECSSSSE
T ss_pred CCeeeEEEccCCCCCCCEEEEeCCChHHhcCCcEEEEEEe---eeeeCCCcEEEEEECCEECCCCceeecCcccCCCCcE
Confidence 32222221 11111 1112239999999998 55 343 379996521 111111 000
Q ss_pred cceeeEEEccCCCCCceEEEEEEEecCCC
Q psy7039 277 STTASLNIKNSVRKDSGIYKIEAKNDYGI 305 (516)
Q Consensus 277 ~~~~~l~i~~l~~~d~g~y~c~a~n~~g~ 305 (516)
.....|.|..+..+|.|.|+|.|.|..+.
T Consensus 281 ~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~ 309 (323)
T 2wqr_A 281 FVFSRLEVTRAEWEQKDEFICRAVHEAAS 309 (323)
T ss_dssp EEEEEEEEEHHHHHHCCCEEEEEECTTST
T ss_pred EEEEEEEEChHHccCCCEEEEEEEeCCCC
Confidence 11346889999999999999999998766
|
| >1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer, SCFV, variable domain, immune system; 2.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 | Back alignment and structure |
|---|
Probab=99.44 E-value=4.4e-12 Score=117.14 Aligned_cols=163 Identities=13% Similarity=0.070 Sum_probs=112.5
Q ss_pred ccccCCceEEEEEEEEccCCCC----Cceecccccc-------------------cceEEEEEecceeeEEEccCCCCCc
Q psy7039 236 NNVHEGKAYEYRVSAVNAAGTE----KPKISLDALI-------------------GKRIKEFVTSTTASLNIKNSVRKDS 292 (516)
Q Consensus 236 ~~l~~g~~~~~~~~~~~~~g~p----~p~i~W~~~~-------------------~~~~~~~~~~~~~~l~i~~l~~~d~ 292 (516)
..+.+|+.+.|.|.+ .|.+ .+.+.|.+.. ..++.+........|.|.+++.+|+
T Consensus 11 ~~v~~G~~v~L~C~~---~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~ 87 (240)
T 1moe_A 11 LAVSLGQRATMSCRA---GESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSRTDFTLIIDPVEADDV 87 (240)
T ss_dssp EEECTTSCEEEEEEE---SSCCEETTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred EEecCCCCEEEEEeC---CCccccCCCceEEEEEECCCCCceEEEEEecccCcCCCccEEEEecCCeEEEEEcCCChhhC
Confidence 456789999999998 7776 7889996521 1123333334556899999999999
Q ss_pred eEEEEEEEecCCC-cceeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCC
Q psy7039 293 GIYKIEAKNDYGI-DMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGE 371 (516)
Q Consensus 293 g~y~c~a~n~~g~-~~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~ 371 (516)
|.|+|.|.|..+. ......|.|...+.....++.+ ..+....+..|+
T Consensus 88 G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~--------------------------------~~~~~~~v~~G~ 135 (240)
T 1moe_A 88 ATYYCQQTNEDPYTFGGGTKLEIKGGGSGGGGEVQL--------------------------------QQSGAELVEPGA 135 (240)
T ss_dssp EEEEEEECSSSSCCBCCCEEEEECCCSCCCCCCCEE--------------------------------EECCCEEECTTC
T ss_pred EEEEEEEccCCceeecCCEEEEEecCCCCCCceEEE--------------------------------eCCCceEEeCCC
Confidence 9999999998654 3345667776544211111111 112345688999
Q ss_pred eEEEEEEEeeecC--CceEEEECC--eecC-----------------CCCceEEEEc--CCeEEEEEcCceecCCceEEE
Q psy7039 372 EFTITVPFSGRPK--PTPIWTVNG--DEVS-----------------PDGRIKFETS--ENQTIYRNKSAKRATDSGSYT 428 (516)
Q Consensus 372 ~~~l~C~~~g~p~--~~i~W~~~~--~~l~-----------------~~~~~~~~~~--~~~~~l~i~~~~~~~~~g~y~ 428 (516)
.+.|.|.+.+.|. +.+.|+++. ..+. ...++.+... .....|.|.++.. .|+|.|+
T Consensus 136 ~v~L~C~~~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~-~D~G~Y~ 214 (240)
T 1moe_A 136 SVKLSCTASGFNIKDTYMHWVKQRPEQGLEWIGRIDPANGNSKYVPKFQGKATITADTSSNTAYLQLTSLTS-EDTAVYY 214 (240)
T ss_dssp CEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCG-GGCEEEE
T ss_pred cEEEEEEEcCccCCCCEEEEEEECCCCCcEEEEEEcccCCccccCccccccEEEEEcccCCEEEEEECcCCH-HHCEEEE
Confidence 9999999998874 589999962 2110 1235555432 4557899999999 9999999
Q ss_pred EEEEcC
Q psy7039 429 IQLVNT 434 (516)
Q Consensus 429 c~a~n~ 434 (516)
|.|.+.
T Consensus 215 C~a~~~ 220 (240)
T 1moe_A 215 CAPFGY 220 (240)
T ss_dssp EEECST
T ss_pred EEEEec
Confidence 999853
|
| >2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=2.6e-12 Score=119.06 Aligned_cols=155 Identities=15% Similarity=0.146 Sum_probs=107.3
Q ss_pred CcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCC--ee---ec---------cC
Q psy7039 119 STLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSING--QV---CQ---------IG 184 (516)
Q Consensus 119 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~--~~---~~---------~~ 184 (516)
..+..+.+.+|+++.|.|.+. +.|.+.+.|+++. .. +. ..
T Consensus 6 ~~p~~~~v~~G~~v~L~C~~~--------------------------~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~ 59 (242)
T 2znx_A 6 QSPATLSVTPGNSVSLSCRAS--------------------------QSIGNNLHXYQQKSHESPRLLIKYASQSISGIP 59 (242)
T ss_dssp EECSEEEECTTCCEEEEEEES--------------------------SCCTTCEEEEEECTTSCCEEEEETTTEECTTSC
T ss_pred EcCCeEEEcCCCcEEEEEEeC--------------------------CCCCceEEEEEeCCCCCceEEEEeccccCCCCC
Confidence 445668899999999999999 7778889998842 11 10 13
Q ss_pred CceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCce---EEEEEeece---------------ee---eeccccCCce
Q psy7039 185 GRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTA---TASAHVTGT---------------EF---TDNNVHEGKA 243 (516)
Q Consensus 185 ~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~---~~~~~~~~~---------------~~---~~~~l~~g~~ 243 (516)
.|+.+...+...+|.|.+++.+|+|.|.|.+.|..+.. ...+.+... .+ ....+.+|+.
T Consensus 60 ~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~ 139 (242)
T 2znx_A 60 SRFSGSGSGTDFTLSINSVETEDFGMYFCQQSNSXPYTFGGGTKLEITGGGGSGGGGSGGGGSDIQLQESGPSLVKPSQT 139 (242)
T ss_dssp TTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEC---------------CCEEEEECCSEECTTSC
T ss_pred CCEEEecCCCEEEEEECCCChHHCEEEEEeEecCCceEECCCEEEEEcCCCCCCcccccccccceeeecCCcceecCCCe
Confidence 56666555667799999999999999999999874421 112222110 11 1234788999
Q ss_pred EEEEEEEEccCCCC--Cceecccccc-c----------------------ceEEEEE--ecceeeEEEccCCCCCceEEE
Q psy7039 244 YEYRVSAVNAAGTE--KPKISLDALI-G----------------------KRIKEFV--TSTTASLNIKNSVRKDSGIYK 296 (516)
Q Consensus 244 ~~~~~~~~~~~g~p--~p~i~W~~~~-~----------------------~~~~~~~--~~~~~~l~i~~l~~~d~g~y~ 296 (516)
+.|.|.+ .|.+ .+.+.|.+.. + .++.+.. ......|.|.+++.+|+|.|+
T Consensus 140 v~L~C~~---~g~~~~~~~v~W~k~~~~~~~~~l~~~~~~g~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~ 216 (242)
T 2znx_A 140 LSLTCSV---TGDSITSDYXSXIRKFPGNRLEYMGYVSYSGSTYYNPSLKSRISITRDTSKNQYYLDLNSVTTEDTATYY 216 (242)
T ss_dssp EEEEEEE---ESSCGGGSCEEEEEECTTSCEEEEEEECTTSCEEECGGGTTCEEEEEETTTTEEEEEECSCCGGGCEEEE
T ss_pred EEEEEEE---EccccCCcceeeEeeCCCCCcEEEEEEecCCccccCccccCcEEEEecCCCCEEEEEECCCCcCcCEEEE
Confidence 9999998 5554 5789996521 1 1122211 123468999999999999999
Q ss_pred EEEEec
Q psy7039 297 IEAKND 302 (516)
Q Consensus 297 c~a~n~ 302 (516)
|.|.|.
T Consensus 217 C~a~~~ 222 (242)
T 2znx_A 217 CANXDG 222 (242)
T ss_dssp EEETTS
T ss_pred EeccCC
Confidence 999874
|
| >3sob_L Antibody light chain; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L* | Back alignment and structure |
|---|
Probab=99.43 E-value=1.4e-12 Score=120.04 Aligned_cols=169 Identities=11% Similarity=0.054 Sum_probs=112.5
Q ss_pred ccccCCceEEEEEEEEccCCCCCceecccccc-------------------cceEEEEEecceeeEEEccCCCCCceEEE
Q psy7039 236 NNVHEGKAYEYRVSAVNAAGTEKPKISLDALI-------------------GKRIKEFVTSTTASLNIKNSVRKDSGIYK 296 (516)
Q Consensus 236 ~~l~~g~~~~~~~~~~~~~g~p~p~i~W~~~~-------------------~~~~~~~~~~~~~~l~i~~l~~~d~g~y~ 296 (516)
..+.+|+.+.+.|.+ .+.+.+.+.|.+.. ..++..........|.|.+++.+|+|.|+
T Consensus 34 ~~v~~G~~v~L~C~~---~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~ 110 (237)
T 3sob_L 34 LSASVGDRVTITCRA---SQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGSGTDFTLTISSLQPEDFATYY 110 (237)
T ss_dssp EEEETTCCEEEEEEE---SSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred EEEeCCCcEEEEEec---CCCCCceEEEEEECCCCCCEEEEEeccccCCCCCCcEEEEcCCCEEEEEECCCChhhCeEEE
Confidence 456789999999998 67788899995511 22344444556788999999999999999
Q ss_pred EEEEecCCCc-ceeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEE
Q psy7039 297 IEAKNDYGID-MADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTI 375 (516)
Q Consensus 297 c~a~n~~g~~-~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l 375 (516)
|.+.|..+.. .....+.|...+.+|. +.+. .....+..|+.+.|
T Consensus 111 C~~~~~~~~~~~~~~~l~V~~~~~~p~--v~~~---------------------------------~~~~~~~~g~~v~l 155 (237)
T 3sob_L 111 CQQSYTTPPTFGQGTKVEIKRTVAAPS--VFIF---------------------------------PPSDEQLKSGTASV 155 (237)
T ss_dssp EEECSSSSCEECCCEEEEEECCCBCCE--EEEE---------------------------------CCCHHHHHHTEEEE
T ss_pred EeeccCCceEEcCcEEEEEecCCCCCc--eEEe---------------------------------CCChhhccCCceEE
Confidence 9998876532 2344666655332221 0000 01111235788999
Q ss_pred EEEEeeecC--CceEEEECCeecCCCC--ceEEEEcCC-----eEEEEEcCceecCCceEEEEEEEcCCCceeEEEE
Q psy7039 376 TVPFSGRPK--PTPIWTVNGDEVSPDG--RIKFETSEN-----QTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCK 443 (516)
Q Consensus 376 ~C~~~g~p~--~~i~W~~~~~~l~~~~--~~~~~~~~~-----~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~ 443 (516)
.|.+.+.++ +.+.|++++..+..+. ........+ ...|.|..... +|.|.|+|.|.|..........
T Consensus 156 ~C~~~~~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~-~d~g~Y~C~a~n~~~~~~~~~~ 231 (237)
T 3sob_L 156 VCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADY-EKHKVYACEVTHQGLSSPVTKS 231 (237)
T ss_dssp EEEEEEEBSSCCEEEEEETTEECCSSEEEEECCCCTTTCCEEEEEEEEEEHHHH-TTCCEEEEEEECTTCSSCEEEE
T ss_pred EEEEcccCCCceEEEEEECCCCCCCceeecccccccCCCcEEEEEEEEEcHHHc-cCCCcEEEEEeeCCCCCceeee
Confidence 999998544 7999999998775421 000000111 24688999988 9999999999999866544433
|
| >1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A | Back alignment and structure |
|---|
Probab=99.43 E-value=3.7e-12 Score=114.37 Aligned_cols=156 Identities=13% Similarity=0.047 Sum_probs=103.9
Q ss_pred ccccCCceEEEEEEEEccCCCCCceecccccccceEE------EEEecceeeEEEccCCCCCceEEEEEEEecCC-----
Q psy7039 236 NNVHEGKAYEYRVSAVNAAGTEKPKISLDALIGKRIK------EFVTSTTASLNIKNSVRKDSGIYKIEAKNDYG----- 304 (516)
Q Consensus 236 ~~l~~g~~~~~~~~~~~~~g~p~p~i~W~~~~~~~~~------~~~~~~~~~l~i~~l~~~d~g~y~c~a~n~~g----- 304 (516)
..+.+|+.+.|.|.+ .+ +.+.+.|.+....... .........|.|.+++.+|+|.|+|.+.|...
T Consensus 17 ~~v~~G~~v~L~C~~---~~-~~~~~~w~k~g~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~~~~~~~~~~ 92 (201)
T 1nkr_A 17 PLVKSEETVILQCWS---DV-MFEHFLLHREGMFNDTLRLIGEHHDGVSKANFSISRMTQDLAGTYRCYGSVTHSPYQVS 92 (201)
T ss_dssp SEEETTCCEEEEEEE---SS-CCSEEEEEEESSSCEEEEEECEEETTEEEEEEEESSCCGGGCEEEEEEEEBTTBTTCCC
T ss_pred CccCCCCcEEEEEec---cC-CCCEEEEEECCCcCCcceeeeecCCCCceEEEEeccCCcccCeEEEEeEecCCCCcccc
Confidence 346789999999998 33 6778999653221111 01123457899999999999999999987531
Q ss_pred CcceeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeeecC
Q psy7039 305 IDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPK 384 (516)
Q Consensus 305 ~~~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~ 384 (516)
..+..+.|.|...+..|. +. ......+.+|+.++|.|.+.+ +.
T Consensus 93 ~~s~~~~l~V~~~~~~p~--i~----------------------------------~~p~~~v~~G~~v~L~C~~~~-~~ 135 (201)
T 1nkr_A 93 APSDPLDIVIIGLYEKPS--LS----------------------------------AQPGPTVLAGENVTLSCSSRS-SY 135 (201)
T ss_dssp CCCCCEEEEEECSSCCCE--EE----------------------------------EESCSEECTTCEEEEEEEESS-CC
T ss_pred CCCCCEEEEeeccCCCCc--ee----------------------------------cCCCCccCCCCeEEEEEeCCC-CC
Confidence 234456777766433221 10 011135789999999999986 56
Q ss_pred CceEEEECCeecCCCCceEEEEcC-CeEEEEEcCceecCCceEEEEEEEcCC
Q psy7039 385 PTPIWTVNGDEVSPDGRIKFETSE-NQTIYRNKSAKRATDSGSYTIQLVNTV 435 (516)
Q Consensus 385 ~~i~W~~~~~~l~~~~~~~~~~~~-~~~~l~i~~~~~~~~~g~y~c~a~n~~ 435 (516)
+.+.|++++..+...........+ ....|.|.++. |+|.|+|.|.+..
T Consensus 136 ~~~~w~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~---d~G~Y~C~a~~~~ 184 (201)
T 1nkr_A 136 DMYHLSREGEAHERRLPAGPKVNGTFQADFPLGPAT---HGGTYRCFGSFHD 184 (201)
T ss_dssp SEEEEEETTCSSCEEEECEEEETTEEEEEEEEEECC---SCEEEEEEEEETT
T ss_pred ceEEEEECCcccCcccccccccCCceEEEEEeCCcC---CCeeEEEEEEcCC
Confidence 789999999766432211111111 24679998884 9999999998763
|
| >3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ... | Back alignment and structure |
|---|
Probab=99.43 E-value=8.1e-13 Score=119.65 Aligned_cols=162 Identities=11% Similarity=0.033 Sum_probs=109.3
Q ss_pred cccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCC--eee----------c--cCC
Q psy7039 120 TLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSING--QVC----------Q--IGG 185 (516)
Q Consensus 120 ~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~--~~~----------~--~~~ 185 (516)
.+..+.+.+|+++.|.|.+. +.|.+.+.|+++. ..+ . ...
T Consensus 7 ~p~~~~v~~G~~v~L~C~~~--------------------------~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~ 60 (213)
T 3d9a_L 7 SPATLSVTPGNSVSLSCRAS--------------------------QSIGNNLHWYQQKSHESPRLLIKYASQSISGIPS 60 (213)
T ss_dssp ECSEEEECTTCCEEEEEEES--------------------------SCCTTCEEEEEECTTSCCEEEEETTTEECTTSCT
T ss_pred CCccEEEeCCCcEEEEEECC--------------------------CCCCCCEEEEEeCCCCCcEEEEEEcccccccccc
Confidence 35678899999999999999 8888889998743 211 1 125
Q ss_pred ceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCceEE---EEEeec----eeeee----ccccCCceEEEEEEEEccC
Q psy7039 186 RADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATA---SAHVTG----TEFTD----NNVHEGKAYEYRVSAVNAA 254 (516)
Q Consensus 186 ~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~---~~~~~~----~~~~~----~~l~~g~~~~~~~~~~~~~ 254 (516)
|+.+...+...+|.|.+++.+|+|.|+|.+.+..+.... .+.+.. ..+.. .....|..+.+.|.+ .
T Consensus 61 r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~g~~~~l~C~~---~ 137 (213)
T 3d9a_L 61 RFSGSGSGTDFTLSINSVETEDFGMYFCQQSNSWPYTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFL---N 137 (213)
T ss_dssp TEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEE---E
T ss_pred cEEEEcCCCEEEEEECCCChhhCEEEEEeeecCCcceeCCCEEEEEecCCCCceeEeECCChhhcCCCcEEEEEEE---e
Confidence 666666667789999999999999999999987664321 222221 11111 122358899999998 4
Q ss_pred C-CCCc-eeccccccc----c-eEEEEE--ec-----ceeeEEEccCCCCCceEEEEEEEecCCCcceeE
Q psy7039 255 G-TEKP-KISLDALIG----K-RIKEFV--TS-----TTASLNIKNSVRKDSGIYKIEAKNDYGIDMADI 310 (516)
Q Consensus 255 g-~p~p-~i~W~~~~~----~-~~~~~~--~~-----~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~~~ 310 (516)
| .|.+ .+.|.+... . ...... .. ....|.|.++..+|.|.|+|.|.|.........
T Consensus 138 g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~ 207 (213)
T 3d9a_L 138 NFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVK 207 (213)
T ss_dssp EEBSSCCEEEEEETTEEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHHCCEEEEEEECTTCSSCEEE
T ss_pred eecCCceEEEEEcCCCcCcceeeecCCCccCCCCCEEEEEEEEEeccccCCCCEEEEEEEEccCCCceEE
Confidence 4 4555 899976211 1 010000 01 134899999999999999999999876654333
|
| >3ux9_B SCFV antibody; five helices, long loop connecting helix, hydrophobic intera cytokine-immune system complex; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.43 E-value=3.2e-12 Score=119.38 Aligned_cols=154 Identities=17% Similarity=0.157 Sum_probs=104.9
Q ss_pred ccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCc--CceeeEEeeCC--eee------------ccC
Q psy7039 121 LNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSE--PFLNHGWSING--QVC------------QIG 184 (516)
Q Consensus 121 ~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--p~~~i~W~~~~--~~~------------~~~ 184 (516)
+..+.+.+|+++.|.|.+. +. +.+.+.|++.. ... ...
T Consensus 9 p~~~~v~~G~~v~L~C~~~--------------------------~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~ 62 (256)
T 3ux9_B 9 PPSVSGAPGQRVTISCSGS--------------------------SSNIGSNYVSWYQQLPGTAPKLLIYDNNQRPSGVP 62 (256)
T ss_dssp CSEEEECTTCCEEEEEECC--------------------------TTTTTTSCCEEEEECTTSCCEEEEBTTTBCCTTCC
T ss_pred CCcEEEcCCCcEEEEEecC--------------------------CCCCCCceEEEEEECCCCCCEEEEEecCCCCCCcC
Confidence 3458899999999999998 54 56677787632 111 123
Q ss_pred CceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCceE-----EEEEeece----------------------ee---e
Q psy7039 185 GRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTAT-----ASAHVTGT----------------------EF---T 234 (516)
Q Consensus 185 ~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~-----~~~~~~~~----------------------~~---~ 234 (516)
.|+.+...+...+|.|.+++.+|+|.|.|.+.+..+... ..+.+... .+ .
T Consensus 63 ~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (256)
T 3ux9_B 63 DRFSGSKSGTSASLAITGLQSEDEADYYCQVRDNNENEWVFGGGTKLTVLGSGGSTITSYNVYYTKLSSSGSEVQLVESG 142 (256)
T ss_dssp TTEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTTTEEEECCCEEEEEC----------------------CCEEEEEC
T ss_pred CcEEEEccCCEEEEEECCCChhhCEEEEEEEEECCCCceEECCCEEEEEECCCCCcCccceeEEeecCCCccceeEEcCC
Confidence 567666666677999999999999999999998643211 11111110 11 1
Q ss_pred eccccCCceEEEEEEEEccCCCC--Cceecccccc-cc-----------------------eEEEEEe--cceeeEEEcc
Q psy7039 235 DNNVHEGKAYEYRVSAVNAAGTE--KPKISLDALI-GK-----------------------RIKEFVT--STTASLNIKN 286 (516)
Q Consensus 235 ~~~l~~g~~~~~~~~~~~~~g~p--~p~i~W~~~~-~~-----------------------~~~~~~~--~~~~~l~i~~ 286 (516)
...+.+|..+.|.|.+ .|.+ .+.+.|.+.. +. ++.+... .....|.|.+
T Consensus 143 ~~~v~~G~~v~L~C~~---~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~ 219 (256)
T 3ux9_B 143 GGLVQPGGSLRLSCAA---SGFTFSSYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMNS 219 (256)
T ss_dssp CEEECTTCCEEEEEEE---ESSCGGGSEEEEEEECTTCCEEEEEEECSSSSCEEECGGGTTTEEEEEETTTTEEEEEECS
T ss_pred CeEEcCCCeEEEEEEE---eCCcccccEEEEEEECCCCCcEEEEEEccCCCceecCccccceEEEEecCCCCEEEEEECC
Confidence 2337789999999998 5544 7889996521 11 2222222 3455799999
Q ss_pred CCCCCceEEEEEEEecC
Q psy7039 287 SVRKDSGIYKIEAKNDY 303 (516)
Q Consensus 287 l~~~d~g~y~c~a~n~~ 303 (516)
++.+|+|.|+|.|.|..
T Consensus 220 v~~~DsG~Y~C~~~~~~ 236 (256)
T 3ux9_B 220 LRAEDTAVYYCARYIDF 236 (256)
T ss_dssp CCGGGCEEEEEEEEETT
T ss_pred CChhhCEEEEEEEEcCC
Confidence 99999999999999863
|
| >3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.43 E-value=1e-12 Score=123.93 Aligned_cols=194 Identities=15% Similarity=0.155 Sum_probs=105.9
Q ss_pred CCCCCeeEEEEEEcCCCceEEEEEeeceee-eeccccCCceEEEEEEEEccCCCCCceeccccc-ccc------------
Q psy7039 204 SRSDTGHYSLTLENNLGTATASAHVTGTEF-TDNNVHEGKAYEYRVSAVNAAGTEKPKISLDAL-IGK------------ 269 (516)
Q Consensus 204 ~~~d~g~Y~c~~~~~~g~~~~~~~~~~~~~-~~~~l~~g~~~~~~~~~~~~~g~p~p~i~W~~~-~~~------------ 269 (516)
.+.|.+.|.|.+.+..|............. ....+.+|+.+.|.|.+ .+ +.+.+.|.+. .+.
T Consensus 4 ~~~~~~~y~~~~~~~~g~~~~~~~~~v~~~p~~v~v~~G~~v~L~C~~---~~-~~~~v~W~k~~~~~~~~~~~~~~~~~ 79 (270)
T 3qib_D 4 ERADLIAYLKQATKGGGGSGGGGGMKVIQTPRYLVKGQGQKAKMRCIP---EK-GHPVVFWYQQNKNNEFKFLINFQNQE 79 (270)
T ss_dssp ------------------------CCCEEECSEEEEETTSCEEEEEEC---CT-TCCEEEEEEECTTCCEEEEEEEETTE
T ss_pred hhhhHHHHHHHHhccCCccccccceeEEeCCCeEEEcCCCCEEEEEEe---cC-CCceEEEEEECCCCCcEEEEEECCCC
Confidence 567889999999987766544433333222 23456789999999986 33 6788999651 111
Q ss_pred ----------eEEEEE-ecceeeEEEccCCCCCceEEEEEEEecCC----CcceeEEEEEecCCCCCCCC-ceeeeccCC
Q psy7039 270 ----------RIKEFV-TSTTASLNIKNSVRKDSGIYKIEAKNDYG----IDMADIEVVVVSKPGPPTGP-IDYTTVTPE 333 (516)
Q Consensus 270 ----------~~~~~~-~~~~~~l~i~~l~~~d~g~y~c~a~n~~g----~~~~~~~l~v~~~p~~p~~p-~~~~~~~~~ 333 (516)
++.+.. ......|.|.+++.+|+|.|.|.+.+..+ .......+.|......+..| +.+.
T Consensus 80 ~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~----- 154 (270)
T 3qib_D 80 VLQQIDMTEKRFSAECPSNSPCSLEIQSSEAGDSALYLCASSLNWSQDTQYFGPGTRLLVLEDLKNVFPPEVAVF----- 154 (270)
T ss_dssp EEEECHHHHHHEEEECCTTSCEEEEESSCCGGGCEEEEEEEESCTTCCCCEECCCEEEEEESCSTTCBCCEEEEE-----
T ss_pred ceecCCccCCcEEEEeCCCcEEEEEECCCCHhHCeEEEEEEecCCCccceEECCcEEEEEccccccccCCceEEE-----
Confidence 222211 22356899999999999999999996432 22233456665532222111 0000
Q ss_pred eeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEee-ecCC-ceEEEECCeecCCC------------
Q psy7039 334 SVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSG-RPKP-TPIWTVNGDEVSPD------------ 399 (516)
Q Consensus 334 ~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g-~p~~-~i~W~~~~~~l~~~------------ 399 (516)
.+....+..|+.+.|.|.+.+ .|.+ .+.|+++|..+..+
T Consensus 155 ---------------------------~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~~~ 207 (270)
T 3qib_D 155 ---------------------------EPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVCTDPQPLKEQP 207 (270)
T ss_dssp ---------------------------ECCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECTTEEECSSCEESCT
T ss_pred ---------------------------CCCccccccCCceEEEEEecceeCCCeEEEEEECCEECCCCcccccccccccc
Confidence 011112335899999999998 5556 89999999877542
Q ss_pred ----CceEEEEcCCeEEEEEcCceecCC-ceEEEEEEEcCCCcee
Q psy7039 400 ----GRIKFETSENQTIYRNKSAKRATD-SGSYTIQLVNTVGSDS 439 (516)
Q Consensus 400 ----~~~~~~~~~~~~~l~i~~~~~~~~-~g~y~c~a~n~~G~~s 439 (516)
..+.+. +.|.|..... +| .|.|+|.|.|......
T Consensus 208 ~~~~~~~~~~-----s~L~i~~~~~-~d~~g~YtC~v~~~~l~~~ 246 (270)
T 3qib_D 208 ALNDSRYALS-----SRLRVSATFW-QNPRNHFRCQVQFYGLSEN 246 (270)
T ss_dssp TSSSCCEEEE-----EEEEEEHHHH-HSTTCEEEEEEEECCBCTT
T ss_pred cCCCCCEEEE-----EEEEEcHHHh-ccCCCeEEEEEEecCCCCc
Confidence 122221 4578877776 66 9999999999876543
|
| >3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.42 E-value=1.5e-12 Score=116.03 Aligned_cols=129 Identities=20% Similarity=0.236 Sum_probs=100.6
Q ss_pred CcEEEeCCCcCCCeEEEEEEEecCCCCCCCCCCCcceEeccCCCCCcccc--CcccceEEecCCeEEEEEeeeecccccc
Q psy7039 69 ETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAPRIDR--STLNDVKIKAGQSFSFDVKEFRELSYTK 146 (516)
Q Consensus 69 ~~~~~i~~l~~~~~y~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~p~~~~--~~~~~~~v~~g~~~~l~C~~~~~~~~~~ 146 (516)
..+|.|.+++..|.|.|+|.|.|..|..... ..+.+.. +|.+.. .......+.+|+.+.|.|.+.
T Consensus 62 ~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~-~~l~v~~-----~p~~~~~~~~~~~~~~~~g~~~~l~C~~~------- 128 (197)
T 3lcy_A 62 THTLTVMTEEQEDEGVYTCIATNEVGEVETS-SKLLLQA-----TPQFHPGYPLKEKYYGAVGSTLRLHVMYI------- 128 (197)
T ss_dssp EEEEEEECCSGGGCEEEEEEEECSSCEEEEE-EEEEEEE-----EEEECTTSCCCSEEEEETTSCEEEEEEEE-------
T ss_pred EEEEEEecCCccCCEEEEEEEECCCCceeEE-EEEEEEc-----CCCCCCCccCCcceeecCCCeEEEEEEEe-------
Confidence 4589999999999999999999877653211 1222221 222221 223456788999999999999
Q ss_pred CccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEeecCCeeEEEeccCCC-CCCeeEEEEEEcCCCceEEE
Q psy7039 147 SPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFCSR-SDTGHYSLTLENNLGTATAS 225 (516)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~-~d~g~Y~c~~~~~~g~~~~~ 225 (516)
+.|.+.+.|++++..+....++.+...+....|.|.++.. +|+|.|+|.+.|..|.....
T Consensus 129 -------------------~~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~ 189 (197)
T 3lcy_A 129 -------------------GRPVPAMTWFHGQKLLQNSENITIENTEHYTHLVMKNVQRKTHAGKYKVQLSNVFGTVDAI 189 (197)
T ss_dssp -------------------EESCCEEEEEETTEECCCCSSEEEEECSSEEEEEESSCCHHHHCEEEEEEEECSSCEEEEE
T ss_pred -------------------eeeCCeeEEeECCEECCCCCceEEEEcCCEEEEEEccccchhhCceEEEEEEcCcCceEEE
Confidence 8999999999999999888888888777778999999995 89999999999999987766
Q ss_pred EEee
Q psy7039 226 AHVT 229 (516)
Q Consensus 226 ~~~~ 229 (516)
..+.
T Consensus 190 ~~l~ 193 (197)
T 3lcy_A 190 LDVE 193 (197)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 5443
|
| >1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E* | Back alignment and structure |
|---|
Probab=99.42 E-value=6.8e-13 Score=119.53 Aligned_cols=187 Identities=14% Similarity=0.148 Sum_probs=104.8
Q ss_pred ccccCCceEEEEEEEEccCCCCCceecccccccceEEEEEecceeeEEEccCCCCCceEEEEEEEecCCCcceeEEEEEe
Q psy7039 236 NNVHEGKAYEYRVSAVNAAGTEKPKISLDALIGKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVV 315 (516)
Q Consensus 236 ~~l~~g~~~~~~~~~~~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~~~~l~v~ 315 (516)
..+.+|+.+.|.|.+ |.+.+.|.+.. ..+... ......|.|.+++.+|+|.|+|.+.+.. +..+.+.+.
T Consensus 13 ~~~~~G~~v~L~C~~------p~~~i~W~k~g-~~l~~~-~~~~~~L~i~~v~~~DsG~Y~C~~~~~~---s~~~~v~v~ 81 (204)
T 1sy6_A 13 YDYQEDGSVLLTCDA------EAKNITWFKDG-KMIGFL-TEDKKKWNLGSNAKDPRGMYQCKGSQNK---SKPLQVYYR 81 (204)
T ss_dssp CCCCSSSEEEEEECS------CSSEEEEEETT-EEEEEE-ESSCCCEEEEEGGGCCEEEEEEESSSSC---CCCEEEEEE
T ss_pred EeecCCCeEEEEEcC------CCCEEEEEECC-EECCCC-CCCCCeEEeCCCCcCCCEEEEEEecCCC---CeeEEEEEE
Confidence 345689999999976 78899997632 222111 2456789999999999999999964422 223444443
Q ss_pred cCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeeecCCceEEEECCee
Q psy7039 316 SKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDE 395 (516)
Q Consensus 316 ~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~ 395 (516)
..+.....+......... .+.....+.. +....+...........+|+.+.|.|. +.|.+.+.|++++..
T Consensus 82 ~~~~~~~~~~~~~~~~~~------~~~~~~~~~~--~~~~~~~~~~~p~~v~~~G~~v~L~C~--g~p~p~i~W~k~~~~ 151 (204)
T 1sy6_A 82 MGSADDAKKDAAKKDDAK------KDDAKKDGSD--GNEEMGGITQTPYKVSISGTTVILTCP--QYPGSEILWQHNDKN 151 (204)
T ss_dssp C--------------------------------------------CCCCEEEEETTEEEEECS--CCCSSCEEEEETTEE
T ss_pred Eecccccccccccccccc------cccccccccc--ccccccceecCCceeeecCCcEEEEcC--CCCCCceEEEECCEE
Confidence 100000000000000000 0000000000 000000000011122238999999999 788889999999987
Q ss_pred cCCCC-ceEEEEcCCeEEEEEcCc-eecCCceEEEEEEEcCCCce-eEEEEEEE
Q psy7039 396 VSPDG-RIKFETSENQTIYRNKSA-KRATDSGSYTIQLVNTVGSD-SASCKVYV 446 (516)
Q Consensus 396 l~~~~-~~~~~~~~~~~~l~i~~~-~~~~~~g~y~c~a~n~~G~~-s~s~~l~v 446 (516)
+.... ...+... ...|.|.++ .. .|+|.|+|.|.|..|.. +....|.+
T Consensus 152 l~~~~~~~~~~~~--~~~L~I~~v~~~-~D~G~Y~C~A~N~~g~~~s~~l~l~~ 202 (204)
T 1sy6_A 152 IGGDEDDKNIGSD--EDHLSLKEFSEL-EQSGYYVCYPRGSKPEDANFYLYLRA 202 (204)
T ss_dssp ESCCTTCTTEEEE--TTEEEETTCCHH-HHCEEEEEEETTSCGGGSSCEEEEEE
T ss_pred CCCccCCceEecC--CCEEEEeeCCcc-ccCEEEEEEeccCCCCceeEEEEEEE
Confidence 75431 1111111 247999999 99 99999999999999973 45555544
|
| >2kbg_A N-CAM 2, neural cell adhesion molecule 2; fibronectin type III module, beta-sheet sandwich, cell membrane, glycoprotein, immunoglobulin domain; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.42 E-value=5.3e-13 Score=106.94 Aligned_cols=91 Identities=23% Similarity=0.297 Sum_probs=75.8
Q ss_pred cCCCCCCCCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCC-CeEEeEEeecCCcEEEeCCCcCCCeEEEE
Q psy7039 8 KNPFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTG-NWEKAVVVPAGETSCTVPGLIEGETYQFQ 86 (516)
Q Consensus 8 ~~~~~~p~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~-~~~~~~~~~~~~~~~~i~~l~~~~~y~~~ 86 (516)
..|..+|++|..+.+. .+.+++.|+|.++ .|||++|.+|.|+|+..+. .|......++..++++|.+|+++..|+|+
T Consensus 3 ~~p~~~P~pP~~~~~~-~~~~sv~L~W~p~-~dggsPI~~Y~I~yr~~~~~~w~~~~~~~~~~~~~~l~~L~p~t~Y~fr 80 (114)
T 2kbg_A 3 EASMREPSPPSIHGQP-SSGKSFKLSITKQ-DDGGAPILEYIVKYRSKDKEDQWLEKKVQGNKDHIILEHLQWTMGYEVQ 80 (114)
T ss_dssp ----CCCCSCCEECCB-CSTTCEEEEECCC-CCSSSCCSEEEEEEEESSCCSCCEEEEEETTTCCEEECCCCTTCCEEEE
T ss_pred ccCCCCccCCcccccc-cCCCEEEEEEECC-CCCCCcccEEEEEEEeCCCCCcEEeEEcCCCcCEEEEcCCCCCCEEEEE
Confidence 3466789999887655 7899999999975 6899999999999999755 67666667778899999999999999999
Q ss_pred EEEecCCCCCCCCC
Q psy7039 87 VRAVNAAGPGEASK 100 (516)
Q Consensus 87 ~~a~n~~g~~~~s~ 100 (516)
+.|.|..|.+.++.
T Consensus 81 V~A~N~~G~s~pS~ 94 (114)
T 2kbg_A 81 ITAANRLGYSEPTV 94 (114)
T ss_dssp EEEECTTSCEEEEE
T ss_pred EEEEeCCcCcCCcC
Confidence 99999999988654
|
| >1x4x_A Fibronectin type-III domain containing protein 3A; FN3, immunoglobulin-like beta- sandwich fold, KIAA0970, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 | Back alignment and structure |
|---|
Probab=99.42 E-value=1.4e-12 Score=103.91 Aligned_cols=90 Identities=21% Similarity=0.328 Sum_probs=76.3
Q ss_pred CCCCCCCCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCCCeEEeEEeecCCcEEEeCCCcCCCeEEEEEE
Q psy7039 9 NPFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVVVPAGETSCTVPGLIEGETYQFQVR 88 (516)
Q Consensus 9 ~~~~~p~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~~~ 88 (516)
++.++|++|.++++..++++++.|+|.+|. ++|++|.+|+|+|+..++.|.... ....+++.|.+|++++.|.|+|+
T Consensus 3 t~~~~P~~P~~~~~~~~s~~sv~l~W~~p~-~~g~~i~~Y~v~~~~~~~~~~~~~--~~~~~~~~v~~L~p~t~Y~frV~ 79 (106)
T 1x4x_A 3 SGSSGPDQCKPPQVTCRSATCAQVNWEVPL-SNGTDVTEYRLEWGGVEGSMQICY--CGPGLSYEIKGLSPATTYYCRVQ 79 (106)
T ss_dssp SSCCSCCCCCCCCCEEEETTEEEEECCCCS-CSSSCCCEEEEEEESSTTSCCEEE--EESCSEEEEESCCSSCEEEEEEE
T ss_pred CCCCCcCCCCCCEEEEcCCCEEEEEEcCCC-CCCCcceEEEEEEEcCCCceEEEE--eCCcceEEEcCCCCCCEEEEEEE
Confidence 567899999999999999999999999986 466789999999998665554332 24678999999999999999999
Q ss_pred EecCCCCCCCCCC
Q psy7039 89 AVNAAGPGEASKP 101 (516)
Q Consensus 89 a~n~~g~~~~s~~ 101 (516)
|.|..|.+.++..
T Consensus 80 A~n~~G~g~~S~~ 92 (106)
T 1x4x_A 80 ALSVVGAGPFSEV 92 (106)
T ss_dssp EECSSCCCCBCCC
T ss_pred EEcCCcCCCCcCC
Confidence 9999999876543
|
| >2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=2.9e-12 Score=118.69 Aligned_cols=171 Identities=14% Similarity=0.129 Sum_probs=109.7
Q ss_pred ccccCCceEEEEEEEEccCCCCCceecccccc-------------------cceEEEEEecceeeEEEccCCCCCceEEE
Q psy7039 236 NNVHEGKAYEYRVSAVNAAGTEKPKISLDALI-------------------GKRIKEFVTSTTASLNIKNSVRKDSGIYK 296 (516)
Q Consensus 236 ~~l~~g~~~~~~~~~~~~~g~p~p~i~W~~~~-------------------~~~~~~~~~~~~~~l~i~~l~~~d~g~y~ 296 (516)
..+.+|+.+.|.|.+ .|.+.+.+.|.+.. ..++.+........|.|.+++.+|+|.|.
T Consensus 11 ~~v~~G~~v~L~C~~---~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~ 87 (242)
T 2znx_A 11 LSVTPGNSVSLSCRA---SQSIGNNLHXYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETEDFGMYF 87 (242)
T ss_dssp EEECTTCCEEEEEEE---SSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred EEEcCCCcEEEEEEe---CCCCCceEEEEEeCCCCCceEEEEeccccCCCCCCCEEEecCCCEEEEEECCCChHHCEEEE
Confidence 356789999999998 77788999996521 12333333445678999999999999999
Q ss_pred EEEEecCCCc-ceeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEE
Q psy7039 297 IEAKNDYGID-MADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTI 375 (516)
Q Consensus 297 c~a~n~~g~~-~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l 375 (516)
|.+.|..+.. .....|.|...+..... +. ......+.+ ..+....+.+|+.+.|
T Consensus 88 C~~~n~~~~~~~~~~~L~V~~~~~~~~~-~~--~~~~~~~~~----------------------~~~~~~~v~~G~~v~L 142 (242)
T 2znx_A 88 CQQSNSXPYTFGGGTKLEITGGGGSGGG-GS--GGGGSDIQL----------------------QESGPSLVKPSQTLSL 142 (242)
T ss_dssp EEECSSSSCEECCCEEEEEC------------------CCEE----------------------EEECCSEECTTSCEEE
T ss_pred EeEecCCceEECCCEEEEEcCCCCCCcc-cc--cccccceee----------------------ecCCcceecCCCeEEE
Confidence 9999875432 23456666654431000 00 000000000 0112235789999999
Q ss_pred EEEEeeec--CCceEEEECC--eecC----------------CCCceEEEE--cCCeEEEEEcCceecCCceEEEEEEEc
Q psy7039 376 TVPFSGRP--KPTPIWTVNG--DEVS----------------PDGRIKFET--SENQTIYRNKSAKRATDSGSYTIQLVN 433 (516)
Q Consensus 376 ~C~~~g~p--~~~i~W~~~~--~~l~----------------~~~~~~~~~--~~~~~~l~i~~~~~~~~~g~y~c~a~n 433 (516)
.|.+.+.+ .+.+.|+++. ..+. ...++.+.. ......|.|.++.. .|+|.|.|.|.|
T Consensus 143 ~C~~~g~~~~~~~v~W~k~~~~~~~~~l~~~~~~g~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~-~D~G~Y~C~a~~ 221 (242)
T 2znx_A 143 TCSVTGDSITSDYXSXIRKFPGNRLEYMGYVSYSGSTYYNPSLKSRISITRDTSKNQYYLDLNSVTT-EDTATYYCANXD 221 (242)
T ss_dssp EEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSCEEECGGGTTCEEEEEETTTTEEEEEECSCCG-GGCEEEEEEETT
T ss_pred EEEEEccccCCcceeeEeeCCCCCcEEEEEEecCCccccCccccCcEEEEecCCCCEEEEEECCCCc-CcCEEEEEeccC
Confidence 99999875 4689999853 2110 134555543 23456899999999 999999999998
Q ss_pred CC
Q psy7039 434 TV 435 (516)
Q Consensus 434 ~~ 435 (516)
..
T Consensus 222 ~~ 223 (242)
T 2znx_A 222 GD 223 (242)
T ss_dssp SS
T ss_pred Cc
Confidence 53
|
| >1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer, SCFV, variable domain, immune system; 2.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 | Back alignment and structure |
|---|
Probab=99.42 E-value=3.4e-12 Score=117.84 Aligned_cols=154 Identities=15% Similarity=0.127 Sum_probs=107.6
Q ss_pred CcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcC----ceeeEEeeCC--eee---c-------
Q psy7039 119 STLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEP----FLNHGWSING--QVC---Q------- 182 (516)
Q Consensus 119 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p----~~~i~W~~~~--~~~---~------- 182 (516)
..+..+.+.+|+.+.|.|.+. +.| .+.+.|+++. ..+ .
T Consensus 6 ~~p~~~~v~~G~~v~L~C~~~--------------------------~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~ 59 (240)
T 1moe_A 6 QSPASLAVSLGQRATMSCRAG--------------------------ESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLE 59 (240)
T ss_dssp EECSEEEECTTSCEEEEEEES--------------------------SCCEETTEECEEEEEECTTSCCEEEEETTTEEC
T ss_pred eeCCeEEecCCCCEEEEEeCC--------------------------CccccCCCceEEEEEECCCCCceEEEEEecccC
Confidence 345668899999999999999 777 7889998842 211 0
Q ss_pred --cCCceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCce---EEEEEeece-----------eeeeccccCCceEEE
Q psy7039 183 --IGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTA---TASAHVTGT-----------EFTDNNVHEGKAYEY 246 (516)
Q Consensus 183 --~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~---~~~~~~~~~-----------~~~~~~l~~g~~~~~ 246 (516)
...|+.+...+...+|.|.+++.+|+|.|.|.+.|..+.. ...+.+... ......+.+|+.+.|
T Consensus 60 ~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~v~~G~~v~L 139 (240)
T 1moe_A 60 SGIPVRFSGTGSRTDFTLIIDPVEADDVATYYCQQTNEDPYTFGGGTKLEIKGGGSGGGGEVQLQQSGAELVEPGASVKL 139 (240)
T ss_dssp TTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCCBCCCEEEEECCCSCCCCCCCEEEECCCEEECTTCCEEE
T ss_pred cCCCccEEEEecCCeEEEEEcCCChhhCEEEEEEEccCCceeecCCEEEEEecCCCCCCceEEEeCCCceEEeCCCcEEE
Confidence 1346666655667799999999999999999999875431 122222211 112235678999999
Q ss_pred EEEEEccCCCC--Cceecccccc---c---------------------ceEEEEEe--cceeeEEEccCCCCCceEEEEE
Q psy7039 247 RVSAVNAAGTE--KPKISLDALI---G---------------------KRIKEFVT--STTASLNIKNSVRKDSGIYKIE 298 (516)
Q Consensus 247 ~~~~~~~~g~p--~p~i~W~~~~---~---------------------~~~~~~~~--~~~~~l~i~~l~~~d~g~y~c~ 298 (516)
.|.+ .|.+ .+.+.|.+.. . .++.+... .....|.|.+++.+|+|.|+|.
T Consensus 140 ~C~~---~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 216 (240)
T 1moe_A 140 SCTA---SGFNIKDTYMHWVKQRPEQGLEWIGRIDPANGNSKYVPKFQGKATITADTSSNTAYLQLTSLTSEDTAVYYCA 216 (240)
T ss_dssp EEEE---ESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEE
T ss_pred EEEE---cCccCCCCEEEEEEECCCCCcEEEEEEcccCCccccCccccccEEEEEcccCCEEEEEECcCCHHHCEEEEEE
Confidence 9998 6665 4689997621 1 11222211 3446899999999999999999
Q ss_pred EEe
Q psy7039 299 AKN 301 (516)
Q Consensus 299 a~n 301 (516)
|.+
T Consensus 217 a~~ 219 (240)
T 1moe_A 217 PFG 219 (240)
T ss_dssp ECS
T ss_pred EEe
Confidence 985
|
| >3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; anti-CD3epsilon, T-cell receptor, signalling, IMMU; 2.50A {Cricetulus migratorius} PDB: 3r08_L 3ld8_B 3ldb_B* | Back alignment and structure |
|---|
Probab=99.42 E-value=1.6e-12 Score=117.64 Aligned_cols=166 Identities=13% Similarity=0.108 Sum_probs=109.7
Q ss_pred ccccCCceEEEEEEEEccCCCCCceecccccc-------------------cceEEEEEecceeeEEEccCCCCCceEEE
Q psy7039 236 NNVHEGKAYEYRVSAVNAAGTEKPKISLDALI-------------------GKRIKEFVTSTTASLNIKNSVRKDSGIYK 296 (516)
Q Consensus 236 ~~l~~g~~~~~~~~~~~~~g~p~p~i~W~~~~-------------------~~~~~~~~~~~~~~l~i~~l~~~d~g~y~ 296 (516)
..+.+|+.+.|.|.+ .|.+.+.+.|.+.. ..++..........|.|.+++.+|+|.|+
T Consensus 11 ~~v~~G~~v~L~C~~---~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~ 87 (213)
T 3r06_A 11 LPASLGDRVTINCQA---SQDISNYLNWYQQKPGKAPKLLIYYTNKLADGVPSRFSGSGSGRDSSFTISSLESEDIGSYY 87 (213)
T ss_dssp EEECTTCCEEEEEEE---SSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCSEEE
T ss_pred EEecCCCcEEEEEEe---CCCcCceEEEEEECCCCCcEEEEEEcCcCCCCCCCcEEEeccCCEEEEEECCCCcccCEEEE
Confidence 456789999999998 77788999996511 22333334456679999999999999999
Q ss_pred EEEEecCCCc-ceeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEE
Q psy7039 297 IEAKNDYGID-MADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTI 375 (516)
Q Consensus 297 c~a~n~~g~~-~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l 375 (516)
|.|.|..+.. .....+.|.....+|. +.+ ......+..|..+.|
T Consensus 88 C~~~~~~~~~~~~~~~l~V~~~~~~p~--v~~---------------------------------~~~~~~~~~~~~v~l 132 (213)
T 3r06_A 88 CQQYYNYPWTFGPGTKLEIKRADAKPT--VSI---------------------------------FPPSSEQLGTGSATL 132 (213)
T ss_dssp EEECSSSSCEECCCEEEEECCCCBCCE--EEE---------------------------------ECCCHHHHTTTEEEE
T ss_pred EecccCCceEEcCCceEEEeccCCCce--eee---------------------------------eCCCceecCCCCcEE
Confidence 9999876432 3345566633222221 000 011112335778999
Q ss_pred EEEEeeecCC--ceEEEECCeecCCCC--ceEEEEcCC-----eEEEEEcCceecCCceEEEEEEEcCCCceeE
Q psy7039 376 TVPFSGRPKP--TPIWTVNGDEVSPDG--RIKFETSEN-----QTIYRNKSAKRATDSGSYTIQLVNTVGSDSA 440 (516)
Q Consensus 376 ~C~~~g~p~~--~i~W~~~~~~l~~~~--~~~~~~~~~-----~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~ 440 (516)
.|.+.|.+++ .+.|++++..+..+. ......... .+.|.|..... +|.|.|+|.|.|.......
T Consensus 133 ~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~-~d~g~YtC~v~n~~~~~~~ 205 (213)
T 3r06_A 133 VCFVNNFYPKDINVKWKVDGSEKRDGVLQSVTDQDSKDSTYSLSSTLSLTKADY-ERHNLYTCEVTHKTSTAAI 205 (213)
T ss_dssp EEEEEEEBSSCEEEEEEETTEEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHH-HTCCEEEEEEEETTCSSCE
T ss_pred EEEEeeecCCceEEEEEECCcccCCceEeccCceeCCCCcEEEEEEEEeCHHHh-ccCCeEEEEEEecccCcce
Confidence 9999987653 899999998775421 000111111 13677888888 8899999999998755443
|
| >2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A | Back alignment and structure |
|---|
Probab=99.42 E-value=2.3e-12 Score=116.72 Aligned_cols=129 Identities=16% Similarity=0.156 Sum_probs=96.3
Q ss_pred CCcEEEeCCC-cCCCeEEEEEEEecCCCCCCCCCCCcceEec--cCCCCCccccCcccceEEecCCeEEEEEeeeecccc
Q psy7039 68 GETSCTVPGL-IEGETYQFQVRAVNAAGPGEASKPTAPIVAK--PKNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSY 144 (516)
Q Consensus 68 ~~~~~~i~~l-~~~~~y~~~~~a~n~~g~~~~s~~~~~~~~~--~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~ 144 (516)
....|.|.++ ...|.|.|+|.|.|..|.... ...+.+... .....|.+. ..+....+.+|+.+.|.|.+.
T Consensus 61 ~~~~L~i~~v~~~~d~G~Y~C~a~n~~g~~~~-~~~l~V~~~~~~~~~~p~~~-~~~~~~~~~~g~~v~l~C~~~----- 133 (212)
T 2yd6_A 61 SGSVLRIQPLRTPRDEAIYECVASNNVGEISV-STRLTVLREDQIPRGFPTID-MGPQLKVVERTRTATMLCAAS----- 133 (212)
T ss_dssp TEEEEEECSCCTTTTCEEEEEEEEETTEEEEE-EEEEEEECGGGCCTTCCEEE-ECCCCEEEETTSCEEEEEEEE-----
T ss_pred CceEEEEeccCCCCCCeEEEEEEEcCCCcEEE-EEEEEEeccCccCCCcceee-cCCcceeEecCCCEEEEEEec-----
Confidence 4567999999 499999999999998765321 112222211 112335555 455667889999999999999
Q ss_pred ccCccccccccccCccceeecCcCceeeEEeeCCeeeccC---CceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCc
Q psy7039 145 TKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIG---GRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGT 221 (516)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~---~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~ 221 (516)
|.|.+.+.|++++..+... .++.....+....|.|.+++.+|+|.|+|.+.|..|.
T Consensus 134 ---------------------g~p~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~ 192 (212)
T 2yd6_A 134 ---------------------GNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQGKYECVATNSAGT 192 (212)
T ss_dssp ---------------------CSSCCEEEEEETTEEC------CCEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEE
T ss_pred ---------------------CCCCCeEEEEECCccccCcCCCceEEEEecCCeEEEEEcCCCcccCEEEEEEEECCCCc
Confidence 9999999999999988754 4555555566789999999999999999999999887
Q ss_pred eEE
Q psy7039 222 ATA 224 (516)
Q Consensus 222 ~~~ 224 (516)
...
T Consensus 193 ~~s 195 (212)
T 2yd6_A 193 RYS 195 (212)
T ss_dssp EEC
T ss_pred ccc
Confidence 643
|
| >1qr4_A Protein (tenascin); fibronectin type-III, heparin, extracellular matrix, adhesion, fusion protein, structural protein; 2.55A {Gallus gallus} SCOP: b.1.2.1 b.1.2.1 | Back alignment and structure |
|---|
Probab=99.42 E-value=1.8e-11 Score=108.23 Aligned_cols=171 Identities=17% Similarity=0.300 Sum_probs=109.9
Q ss_pred CCCCCCCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCCCeEEeEEeecCCcEEEeCCCcCCCeEEEEEEE
Q psy7039 10 PFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVVVPAGETSCTVPGLIEGETYQFQVRA 89 (516)
Q Consensus 10 ~~~~p~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~~~a 89 (516)
....|++|.+|++..++++++.|+|.+|. +.+.+|.|+|+..++.+. .........++.|.+|++++.|.|+|+|
T Consensus 3 ~~t~p~~P~~l~~~~~~~~sv~l~W~~p~----~~i~~Y~v~~~~~~~~~~-~~~~~~~~~~~~i~~L~p~t~Y~~~V~a 77 (186)
T 1qr4_A 3 AGTDLDNPKDLEVSDPTETTLSLRWRRPV----AKFDRYRLTYVSPSGKKN-EMEIPVDSTSFILRGLDAGTEYTISLVA 77 (186)
T ss_dssp -----CCCEEEEEESCCSSEEEEEEECCS----SCCSEEEEEEECTTCCEE-EEEECTTCSEEEEESCCSSCEEEEEEEE
T ss_pred ccCCCcCCCceEEEecCCCEEEEEEeCCC----CCccEEEEEEEeCCCCee-EEECCCCCCEEEECCCCCCCEEEEEEEE
Confidence 45679999999999999999999999973 368899999996554443 3344567889999999999999999999
Q ss_pred ecCCCCCCCCCCCcceEeccCCCCCccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCc
Q psy7039 90 VNAAGPGEASKPTAPIVAKPKNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPF 169 (516)
Q Consensus 90 ~n~~g~~~~s~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 169 (516)
.|..|.+.+ ..+.....+.+|. .+. +... +...
T Consensus 78 ~~~~~~s~~----~~~~~~t~p~~P~-------~l~----------~~~~--------------------------~~~s 110 (186)
T 1qr4_A 78 EKGRHKSKP----TTIKGSTVVGSPK-------GIS----------FSDI--------------------------TENS 110 (186)
T ss_dssp ESSSCBCCC----EEEEEECCCCCCS-------CEE----------EESC--------------------------CSSC
T ss_pred EcCCccCCC----EEEEEECCCCCCC-------ccE----------EEEe--------------------------CCCE
Confidence 996554432 2233333323331 122 2222 3455
Q ss_pred eeeEEeeCCeeeccCCceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCce--EEEEEeeceeeeeccccCCceEEEE
Q psy7039 170 LNHGWSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTA--TASAHVTGTEFTDNNVHEGKAYEYR 247 (516)
Q Consensus 170 ~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~--~~~~~~~~~~~~~~~l~~g~~~~~~ 247 (516)
..+.|......+. .|...+....+.. ..........+.+.+|.+|..|.++
T Consensus 111 v~l~W~~p~~~i~---------------------------~Y~v~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~ 163 (186)
T 1qr4_A 111 ATVSWTPPRSRVD---------------------------SYRVSYVPITGGTPNVVTVDGSKTRTKLVKLVPGVDYNVN 163 (186)
T ss_dssp EEEEECCCSSCCS---------------------------EEEEEEEETTCCCCEEEEEETTCCEEEECSCCSSCEEEEE
T ss_pred EEEEEECCCCccc---------------------------EEEEEEEeCCCCCceEEEcCCCcCEEEEcCCCCCCEEEEE
Confidence 6778865432111 3444444332221 1222234466788899999999999
Q ss_pred EEEEccCCCCCc
Q psy7039 248 VSAVNAAGTEKP 259 (516)
Q Consensus 248 ~~~~~~~g~p~p 259 (516)
+.|.+..|...|
T Consensus 164 V~A~~~~g~s~p 175 (186)
T 1qr4_A 164 IISVKGFEESEP 175 (186)
T ss_dssp EEEEETTEECCC
T ss_pred EEEEcCCCcCcC
Confidence 999887765444
|
| >3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D | Back alignment and structure |
|---|
Probab=99.42 E-value=3.4e-12 Score=119.23 Aligned_cols=168 Identities=13% Similarity=0.102 Sum_probs=109.0
Q ss_pred cceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcC--ceeeEEeeC--Ceee----------------
Q psy7039 122 NDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEP--FLNHGWSIN--GQVC---------------- 181 (516)
Q Consensus 122 ~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p--~~~i~W~~~--~~~~---------------- 181 (516)
..+.+.+|+++.|.|.+. +.+ .+.+.|++. +..+
T Consensus 10 ~~~~v~~G~~v~L~C~~~--------------------------~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~ 63 (256)
T 3umt_A 10 GLELVKPGASVKISCKTS--------------------------GYTFTEYTMHWVKQSHGKSLEWIGGINPNNGGTSYN 63 (256)
T ss_dssp CCEEECTTCCEEEEEEEE--------------------------SSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEEC
T ss_pred CceEEcCCCCEEEEEEEe--------------------------cccccccEEEEEEECCCCCcEEEEEEeccCCccccc
Confidence 446789999999999998 433 456666652 1111
Q ss_pred -ccCCceEEeec--CCeeEEEeccCCCCCCeeEEEEEEcCC----Cce--EEEEEeec-----------------eee--
Q psy7039 182 -QIGGRADVQTT--KSETVLDIPFCSRSDTGHYSLTLENNL----GTA--TASAHVTG-----------------TEF-- 233 (516)
Q Consensus 182 -~~~~~~~~~~~--~~~~~l~i~~~~~~d~g~Y~c~~~~~~----g~~--~~~~~~~~-----------------~~~-- 233 (516)
....|+.+... ....+|.|.+++.+|+|.|.|.+.+.. +.. ...+.+.. ..+
T Consensus 64 ~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~ 143 (256)
T 3umt_A 64 QKFKGKAILTVDKSSSTAYLELRSLTSEDSAVYYCARDDRYPAWFAYWGQGTTVTVSSGGGGSGGGGSGGGGSTDIQLTQ 143 (256)
T ss_dssp GGGTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEECCSTTCCSCEECCCEEEEECC---------------CCCCEEE
T ss_pred ccccceEEEEEecCCCEEEEEECCCCcccCEEEEEEEccCCCccccEECCCEEEEEcCCCccccCcccCCCCccccEEEc
Confidence 11246655532 346679999999999999999998861 111 11122221 111
Q ss_pred --eeccccCCceEEEEEEEEccCCCCCceecccccc-------------------cceEEEEEecceeeEEEccCCCCCc
Q psy7039 234 --TDNNVHEGKAYEYRVSAVNAAGTEKPKISLDALI-------------------GKRIKEFVTSTTASLNIKNSVRKDS 292 (516)
Q Consensus 234 --~~~~l~~g~~~~~~~~~~~~~g~p~p~i~W~~~~-------------------~~~~~~~~~~~~~~l~i~~l~~~d~ 292 (516)
....+.+|+.+.|.|.+ .+.+.+.+.|.+.. ..++..........|.|.+++.+|+
T Consensus 144 ~p~~~~v~~G~~v~L~C~~---~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~ 220 (256)
T 3umt_A 144 SPSSLSASLGERVSITCRA---SQDIGSNLNWLQQKPDGTIKRLIYATSSLDSGVPKRFSGSRSGSDYSLTISSLESEDF 220 (256)
T ss_dssp ECSEEEECTTCCEEEEEEE---SSCCTTCEEEEEECTTCCEEEEEETTTEECTTSCTTEEEEEETTEEEEEECSCCGGGC
T ss_pred CCCeEEEECCCCEEEEEEE---ecCCCcEEEEEEECCCCCcEEEEEeccccCCccCCCEEEecCCCEEEEEECCCChhHC
Confidence 12456789999999998 77788899996521 1223333345566799999999999
Q ss_pred eEEEEEEEecCCCc-ceeEEEEEecCC
Q psy7039 293 GIYKIEAKNDYGID-MADIEVVVVSKP 318 (516)
Q Consensus 293 g~y~c~a~n~~g~~-~~~~~l~v~~~p 318 (516)
|.|+|.|.|..+.. .....|.|...+
T Consensus 221 G~Y~C~~~~~~~~~fg~gt~L~V~~~~ 247 (256)
T 3umt_A 221 VDYYCLQYASSPPTFGGGTKLEIKRAA 247 (256)
T ss_dssp SEEEEEECSSSSCEECCCEEEEEC---
T ss_pred EEEEEEEeeCCCcEECCCEEEEEECCC
Confidence 99999999864432 224566666544
|
| >2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A | Back alignment and structure |
|---|
Probab=99.42 E-value=2e-12 Score=119.24 Aligned_cols=164 Identities=13% Similarity=0.103 Sum_probs=107.9
Q ss_pred ccccCCceEEEEEEEEccCCCCCceecccccc-c---------------------ceEEEEE-ecceeeEEEccCCCCCc
Q psy7039 236 NNVHEGKAYEYRVSAVNAAGTEKPKISLDALI-G---------------------KRIKEFV-TSTTASLNIKNSVRKDS 292 (516)
Q Consensus 236 ~~l~~g~~~~~~~~~~~~~g~p~p~i~W~~~~-~---------------------~~~~~~~-~~~~~~l~i~~l~~~d~ 292 (516)
..+.+|+.+.|.|. .+.+.+.+.|.+.. + .++.+.. ......|.|.+++.+|+
T Consensus 10 ~~v~~G~~v~L~C~----~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~Ds 85 (238)
T 2p1y_A 10 KVAVTGGKVTLSCN----QTNNHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQENFSLILELATPSQT 85 (238)
T ss_dssp EEEETTCCEEEEEE----ECSCCSEEEEEEEETTTEEEEEEEESSTTCCEECSSCTTCEEECCSSSBCEEEESSCCGGGC
T ss_pred eEEeCCCEEEEEee----cCCCCccEEEEEECCCCCcEEEEEEecCcceeCCCccceEEEEccCCceEEEEEecCCcccC
Confidence 35678999999998 25578899996631 1 1222221 12355899999999999
Q ss_pred eEEEEEEEecCCCc-----ceeEEEEEecCCCCCCCC-----ceeeeccCCeeEEEecCCCCCCCCceeecccccccccc
Q psy7039 293 GIYKIEAKNDYGID-----MADIEVVVVSKPGPPTGP-----IDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSI 362 (516)
Q Consensus 293 g~y~c~a~n~~g~~-----~~~~~l~v~~~p~~p~~p-----~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~ 362 (516)
|.|+|.|.|..|.. .....|.|...+..+..| ..+ ...+
T Consensus 86 G~Y~C~~~~~~g~~~~~~~~~~~~l~V~~~~~~~~p~~~~~~~~v-------------------------------~~~p 134 (238)
T 2p1y_A 86 SVYFCASGDLGQTNERLFFGHGTKLSVLGSADDAKKDAAKKDGQV-------------------------------RQSP 134 (238)
T ss_dssp EEEEEEEEC------CEEECCCEEEEEECCCHHHHHHHHHHHTCC-------------------------------EEEC
T ss_pred eeEEEEEEeCCCccccceeCCCeEEEEeccCCCCcCCcccceeeE-------------------------------EccC
Confidence 99999999876531 123455555433200000 000 0123
Q ss_pred ccEEEEcCCeEEEEEEEeeecCCceEEEECCe--ec------------CCCCceEEE--EcCCeEEEEEcCceecCCceE
Q psy7039 363 RDMTVLAGEEFTITVPFSGRPKPTPIWTVNGD--EV------------SPDGRIKFE--TSENQTIYRNKSAKRATDSGS 426 (516)
Q Consensus 363 ~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~--~l------------~~~~~~~~~--~~~~~~~l~i~~~~~~~~~g~ 426 (516)
....+.+|+.+.|.|.+.+.|.+.+.|++++. .. ....++.+. .......|.|.++.. .|+|.
T Consensus 135 ~~~~v~~G~~v~L~C~~~~~p~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~-~D~G~ 213 (238)
T 2p1y_A 135 QSLTVWEGETAILNCSYENSAFDYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQP-GDSAT 213 (238)
T ss_dssp SEEEEETTSCEEEEEECCCTTCCEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEETTCCG-GGCEE
T ss_pred ceEEEeCCCeEEEEEEEecCCCCcEEEEEECCCCCCEEEEEEccCCCcccCCceEEEecCCCCeEEEEEcCCCH-HHCEE
Confidence 45678999999999999999999999999642 10 113455544 233457899999999 99999
Q ss_pred EEEEEEcCC
Q psy7039 427 YTIQLVNTV 435 (516)
Q Consensus 427 y~c~a~n~~ 435 (516)
|+|.|.|..
T Consensus 214 Y~C~a~n~~ 222 (238)
T 2p1y_A 214 YFCAAIDTN 222 (238)
T ss_dssp EEEEEEETT
T ss_pred EEEEEeeCC
Confidence 999999984
|
| >1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen complex, HIV inhibiting antibody; 1.89A {Mus musculus} PDB: 1jp5_A | Back alignment and structure |
|---|
Probab=99.42 E-value=3.9e-12 Score=118.15 Aligned_cols=163 Identities=14% Similarity=0.130 Sum_probs=109.1
Q ss_pred ccccCCceEEEEEEEEccCCCC-----Cceecccccc-------------------cceEEEEEecceeeEEEccCCCCC
Q psy7039 236 NNVHEGKAYEYRVSAVNAAGTE-----KPKISLDALI-------------------GKRIKEFVTSTTASLNIKNSVRKD 291 (516)
Q Consensus 236 ~~l~~g~~~~~~~~~~~~~g~p-----~p~i~W~~~~-------------------~~~~~~~~~~~~~~l~i~~l~~~d 291 (516)
..+.+|+.+.|.|.+ .|.+ .+.+.|.+.. ..++..........|.|.+++.+|
T Consensus 11 ~~v~~G~~v~L~C~~---~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D 87 (247)
T 1svz_A 11 LPVSLGDQASISCRS---SQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAED 87 (247)
T ss_dssp EEECTTCCEEEEEEE---SSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGG
T ss_pred EEecCCCCEEEEEeC---CCcccccCCCceEEEEEECCCCCceEEEEEecccCCCCCCcEEeccCCCEEEEEECCCCHHH
Confidence 356789999999998 6666 6889996521 123333334456689999999999
Q ss_pred ceEEEEEEEecCCC-cceeEEEEEecCCCCC-------CCCceeeeccCCeeEEEecCCCCCCCCceeeccccccccccc
Q psy7039 292 SGIYKIEAKNDYGI-DMADIEVVVVSKPGPP-------TGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIR 363 (516)
Q Consensus 292 ~g~y~c~a~n~~g~-~~~~~~l~v~~~p~~p-------~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~ 363 (516)
+|.|.|.+.|..+. ......|.|...+... ..++.+. ...
T Consensus 88 ~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~--------------------------------~~~ 135 (247)
T 1svz_A 88 LGIYYCFQGSHFPPTFGGGTKLEIKGGGGSGGGGSGGGGSEVQLQ--------------------------------QSG 135 (247)
T ss_dssp CEEEEEEECSSSSCEECCCEEEEEC---------------CCEEE--------------------------------ECC
T ss_pred CEEEEEEEccCCccEECCCEEEEEECCccccccccccccCceEEe--------------------------------CCC
Confidence 99999999987553 2234566665543210 0001100 112
Q ss_pred cEEEEcCCeEEEEEEEeeec--CCceEEEECC--eec------C-----------CCCceEEEE--cCCeEEEEEcCcee
Q psy7039 364 DMTVLAGEEFTITVPFSGRP--KPTPIWTVNG--DEV------S-----------PDGRIKFET--SENQTIYRNKSAKR 420 (516)
Q Consensus 364 ~~~v~~g~~~~l~C~~~g~p--~~~i~W~~~~--~~l------~-----------~~~~~~~~~--~~~~~~l~i~~~~~ 420 (516)
...+..|+.+.|.|.+.+.+ .+.+.|++++ ..+ . ...++.+.. ......|.|.++..
T Consensus 136 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~ 215 (247)
T 1svz_A 136 PELKKPGETVKISCKATNYAFTDYSMHWVKQAPGGDLKYVGWINTETDEPTFADDFKGRFAFSLDTSTSTAFLQINNLKN 215 (247)
T ss_dssp CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECTTTCCEEECGGGSSSEEEEEEGGGTEEEEEECSCCG
T ss_pred ceeecCCCcEEEEEEEcCcccCCcEEEEEEeCCCCCcEEEEEEEcCCCccccCccccCcEEEEEecCCCEEEEEECCCCh
Confidence 24588999999999998874 5689999863 111 0 134555543 34567899999999
Q ss_pred cCCceEEEEEEEcC
Q psy7039 421 ATDSGSYTIQLVNT 434 (516)
Q Consensus 421 ~~~~g~y~c~a~n~ 434 (516)
.|+|.|.|.|.|.
T Consensus 216 -~DsG~Y~C~a~n~ 228 (247)
T 1svz_A 216 -EDTATYFCVRDRH 228 (247)
T ss_dssp -GGCEEEEEEEEEG
T ss_pred -hHCEEEEEEEecc
Confidence 9999999999985
|
| >4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens} PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E | Back alignment and structure |
|---|
Probab=99.41 E-value=3.1e-12 Score=118.64 Aligned_cols=72 Identities=15% Similarity=0.126 Sum_probs=50.5
Q ss_pred EEcCCeEEEEEEEeeecCC--ceEEEECCeecCCCCceEEEE-------cCC----eEEEEEcCceecCC-ceEEEEEEE
Q psy7039 367 VLAGEEFTITVPFSGRPKP--TPIWTVNGDEVSPDGRIKFET-------SEN----QTIYRNKSAKRATD-SGSYTIQLV 432 (516)
Q Consensus 367 v~~g~~~~l~C~~~g~p~~--~i~W~~~~~~l~~~~~~~~~~-------~~~----~~~l~i~~~~~~~~-~g~y~c~a~ 432 (516)
+..|+.+.|.|.+.|.+++ .+.|+++|..+.......... ..+ .+.|.|..... .| .|.|+|.|.
T Consensus 137 ~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~-~d~~g~YtC~v~ 215 (246)
T 4dzb_B 137 ISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFW-QNPRNHFRCQVQ 215 (246)
T ss_dssp HHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECTTEEECSSCEESSTTSTTCCEEEEEEEEEEHHHH-TCTTCEEEEEEE
T ss_pred ccCCCcEEEEEEEccCcCCceEEEEEECCEECCCCcccccccccccccCCCCCEEEEEEEEECHHHh-ccCCCeEEEEEE
Confidence 3458999999999998765 899999998775421110000 011 13588888877 77 999999999
Q ss_pred cCCCcee
Q psy7039 433 NTVGSDS 439 (516)
Q Consensus 433 n~~G~~s 439 (516)
|......
T Consensus 216 ~~~~~~~ 222 (246)
T 4dzb_B 216 FYGLSEN 222 (246)
T ss_dssp ECCBCTT
T ss_pred ecCCCCc
Confidence 9876544
|
| >2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens} PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A 3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L 3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ... | Back alignment and structure |
|---|
Probab=99.41 E-value=5.8e-12 Score=114.31 Aligned_cols=168 Identities=12% Similarity=0.100 Sum_probs=108.0
Q ss_pred ccccCCceEEEEEEEEccCCC-CCceecccccc-------------------cceEEEEEecceeeEEEccCCCCCceEE
Q psy7039 236 NNVHEGKAYEYRVSAVNAAGT-EKPKISLDALI-------------------GKRIKEFVTSTTASLNIKNSVRKDSGIY 295 (516)
Q Consensus 236 ~~l~~g~~~~~~~~~~~~~g~-p~p~i~W~~~~-------------------~~~~~~~~~~~~~~l~i~~l~~~d~g~y 295 (516)
..+.+|+.+.|.|.+. .+. +.+.+.|.+.. ..++..........|.|.+++.+|+|.|
T Consensus 10 ~~v~~G~~v~L~C~v~--~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y 87 (216)
T 2xzc_L 10 VSAAPGQKVTISCSGS--SSNIGNNYVSWYQQLPGTAPKLLIYDNNKRPSGIPDRFSGSKSGTSATLGITGLQTGDEADY 87 (216)
T ss_dssp EEECTTCCEEEEEECC--TTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEECSCCGGGCEEE
T ss_pred EEecCCCeEEEEEEee--cCCCCCCeEEEEEeCCCCCcEEEEEecCccCCCCCCceEEeccCCEEEEEECCCCcccCEEE
Confidence 4567899999999852 333 25789996521 1233333345567899999999999999
Q ss_pred EEEEEecCC--CcceeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeE
Q psy7039 296 KIEAKNDYG--IDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEF 373 (516)
Q Consensus 296 ~c~a~n~~g--~~~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~ 373 (516)
+|.|.|..+ .......|.|...+.+|. +.+. ........|+.+
T Consensus 88 ~C~~~~~~~~~~~~~~~~l~V~~~~~~P~--v~~~---------------------------------~~~~~~~~g~~v 132 (216)
T 2xzc_L 88 YCGTWDSSLNPVFGGGTKLEIKRTVAAPS--VFIF---------------------------------PPSDEQLKSGTA 132 (216)
T ss_dssp EEEEECTTSCEEEBCCEEEEECCCCBCCE--EEEE---------------------------------CCCHHHHHTTEE
T ss_pred EEEEEeCCCcceECCCEEEEEcCCCCCCc--eEEe---------------------------------CCChhhccCCcE
Confidence 999999876 122334566643322221 0000 000011258899
Q ss_pred EEEEEEeee-cCC-ceEEEECCeecCCCCceE--EEEcCC-----eEEEEEcCceecCCceEEEEEEEcCCCceeEE
Q psy7039 374 TITVPFSGR-PKP-TPIWTVNGDEVSPDGRIK--FETSEN-----QTIYRNKSAKRATDSGSYTIQLVNTVGSDSAS 441 (516)
Q Consensus 374 ~l~C~~~g~-p~~-~i~W~~~~~~l~~~~~~~--~~~~~~-----~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s 441 (516)
.|.|.+.|. |.+ .+.|++++..+..+.... .....+ .+.|.|..+.. .|.|.|+|.|.|........
T Consensus 133 ~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~-~d~g~Y~C~a~n~~~~~~~~ 208 (216)
T 2xzc_L 133 SVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADY-EKHKVYACEVTHQGLSSPVT 208 (216)
T ss_dssp EEEEEEEEEBSSCCEEEEEETTEECCSSEEEEECCCCTTTCCEEEEEEEEEEHHHH-TTCCEEEEEEECTTCSSCEE
T ss_pred EEEEEEEeEcCCceEEEEEECCeecCCCeeEecCcccCCCCCEEEEEEEEECHHHh-CCCCcEEEEEEcCCCCCceE
Confidence 999999985 444 899999998775431111 111111 13789999999 99999999999987664433
|
| >1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L* 1mfb_L* ... | Back alignment and structure |
|---|
Probab=99.41 E-value=5.8e-12 Score=113.90 Aligned_cols=164 Identities=13% Similarity=0.120 Sum_probs=107.5
Q ss_pred ccccCCceEEEEEEEEccCCCC---Cceecccccc-c------------------ceEEEEEecceeeEEEccCCCCCce
Q psy7039 236 NNVHEGKAYEYRVSAVNAAGTE---KPKISLDALI-G------------------KRIKEFVTSTTASLNIKNSVRKDSG 293 (516)
Q Consensus 236 ~~l~~g~~~~~~~~~~~~~g~p---~p~i~W~~~~-~------------------~~~~~~~~~~~~~l~i~~l~~~d~g 293 (516)
..+.+|..+.|.|.+ .|.+ .+.+.|.+.. + .++..........|.|.+++.+|+|
T Consensus 10 ~~v~~G~~v~L~C~~---~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G 86 (212)
T 1q0x_L 10 LTTSPGETVTLTCRS---STGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGDKAALTITGAQTEDEA 86 (212)
T ss_dssp EEECTTCCEEEEEEE---SSSCCCGGGCCEEEEEETTTEEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred EeecCCCCEEEEEEe---cccccCCCCeEEEEEeCCCCCceEEEEcCcccCCcccccEEEEeeCCEEEEEECCCCccCCE
Confidence 456789999999998 6666 4789996522 1 2233333445668999999999999
Q ss_pred EEEEEEEecCCCc-ceeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCe
Q psy7039 294 IYKIEAKNDYGID-MADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEE 372 (516)
Q Consensus 294 ~y~c~a~n~~g~~-~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~ 372 (516)
.|+|.|.|..+.. .....+.|...+..+.. +.+. ........|+.
T Consensus 87 ~Y~C~~~~~~~~~~~~~~~l~V~~~~~~~P~-v~~~---------------------------------~~~~~~~~g~~ 132 (212)
T 1q0x_L 87 IYFCALWSNNKLVFGGGTKLTVLGQPKSSPT-VTLF---------------------------------PPSSEELSTAK 132 (212)
T ss_dssp EEEEEEECSSCEEECCCEEEEECCSCCBCCE-EEEE---------------------------------CCCHHHHTTTE
T ss_pred EEEEEEecCchhhcCCCeEEEEecCCCCCCe-eEEe---------------------------------CCCHHHccCCc
Confidence 9999999976532 23345555433211100 0000 00111236889
Q ss_pred EEEEEEEeeecCC--ceEEEECCeecCCCCceE-EEEcC-----CeEEEEEcCceecCCceEEEEEEEcCCCc
Q psy7039 373 FTITVPFSGRPKP--TPIWTVNGDEVSPDGRIK-FETSE-----NQTIYRNKSAKRATDSGSYTIQLVNTVGS 437 (516)
Q Consensus 373 ~~l~C~~~g~p~~--~i~W~~~~~~l~~~~~~~-~~~~~-----~~~~l~i~~~~~~~~~g~y~c~a~n~~G~ 437 (516)
+.|.|.+.|.+++ .+.|++++..+..+.... ..... ....|.|..+.. .|.|.|+|.|.|..+.
T Consensus 133 v~L~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~-~d~g~Y~C~a~n~~~~ 204 (212)
T 1q0x_L 133 ATLVCTITDFYPGVVTVDWKVDGTPVTAGMETTQPSKQSNNKYMASSYLTLTARAW-ERHSSYSCQVTHEGHS 204 (212)
T ss_dssp EEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEECTTSCEEEEEEEEEEHHHH-TTCCEEEEEEEETTEE
T ss_pred EEEEEEEEEEeCCCeEEEEEECCEeCCCCeecCCceeCCCCCEEEEEEEEEcHHHc-cCCCcEEEEEEeCCcc
Confidence 9999999986544 899999998775432110 11111 124688999988 9999999999998755
|
| >1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen complex, HIV inhibiting antibody; 1.89A {Mus musculus} PDB: 1jp5_A | Back alignment and structure |
|---|
Probab=99.41 E-value=3.2e-12 Score=118.66 Aligned_cols=155 Identities=14% Similarity=0.126 Sum_probs=106.8
Q ss_pred CcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcC-----ceeeEEeeCC--eee---c------
Q psy7039 119 STLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEP-----FLNHGWSING--QVC---Q------ 182 (516)
Q Consensus 119 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-----~~~i~W~~~~--~~~---~------ 182 (516)
..+..+.+.+|+.+.|.|.+. +.+ .+.+.|++.. ..+ .
T Consensus 6 ~~p~~~~v~~G~~v~L~C~~~--------------------------~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~ 59 (247)
T 1svz_A 6 QTPLYLPVSLGDQASISCRSS--------------------------QTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNR 59 (247)
T ss_dssp EECSEEEECTTCCEEEEEEES--------------------------SCCBCTTSCBCEEEEEECTTSCEEEEEETTTEE
T ss_pred ecCCeEEecCCCCEEEEEeCC--------------------------CcccccCCCceEEEEEECCCCCceEEEEEeccc
Confidence 345668899999999999998 666 5788888732 111 0
Q ss_pred ---cCCceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCceE---EEEEeece---------------ee---eeccc
Q psy7039 183 ---IGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTAT---ASAHVTGT---------------EF---TDNNV 238 (516)
Q Consensus 183 ---~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~---~~~~~~~~---------------~~---~~~~l 238 (516)
...|+.+...+...+|.|.+++.+|+|.|.|.+.|..+... ..+.+... .+ ....+
T Consensus 60 ~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v 139 (247)
T 1svz_A 60 FSGVPDRFSGSGSGTDFTLKISRVEAEDLGIYYCFQGSHFPPTFGGGTKLEIKGGGGSGGGGSGGGGSEVQLQQSGPELK 139 (247)
T ss_dssp CTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEC---------------CCEEEECCCEEE
T ss_pred CCCCCCcEEeccCCCEEEEEECCCCHHHCEEEEEEEccCCccEECCCEEEEEECCccccccccccccCceEEeCCCceee
Confidence 13566666556677999999999999999999998744311 12222111 11 12237
Q ss_pred cCCceEEEEEEEEccCCCC--Cceecccccc------------------------cceEEEEE--ecceeeEEEccCCCC
Q psy7039 239 HEGKAYEYRVSAVNAAGTE--KPKISLDALI------------------------GKRIKEFV--TSTTASLNIKNSVRK 290 (516)
Q Consensus 239 ~~g~~~~~~~~~~~~~g~p--~p~i~W~~~~------------------------~~~~~~~~--~~~~~~l~i~~l~~~ 290 (516)
.+|+.+.|.|.+ .|.+ .+.+.|.+.. ..++.+.. ......|.|.+++.+
T Consensus 140 ~~G~~v~L~C~~---~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~ 216 (247)
T 1svz_A 140 KPGETVKISCKA---TNYAFTDYSMHWVKQAPGGDLKYVGWINTETDEPTFADDFKGRFAFSLDTSTSTAFLQINNLKNE 216 (247)
T ss_dssp CTTCCEEEEEEE---ESSCGGGSCEEEEEECTTCCEEEEEEECTTTCCEEECGGGSSSEEEEEEGGGTEEEEEECSCCGG
T ss_pred cCCCcEEEEEEE---cCcccCCcEEEEEEeCCCCCcEEEEEEEcCCCccccCccccCcEEEEEecCCCEEEEEECCCChh
Confidence 889999999998 4543 5689996521 11222222 233568999999999
Q ss_pred CceEEEEEEEec
Q psy7039 291 DSGIYKIEAKND 302 (516)
Q Consensus 291 d~g~y~c~a~n~ 302 (516)
|+|.|+|.|.|.
T Consensus 217 DsG~Y~C~a~n~ 228 (247)
T 1svz_A 217 DTATYFCVRDRH 228 (247)
T ss_dssp GCEEEEEEEEEG
T ss_pred HCEEEEEEEecc
Confidence 999999999985
|
| >1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 | Back alignment and structure |
|---|
Probab=99.40 E-value=8.6e-12 Score=118.38 Aligned_cols=168 Identities=16% Similarity=0.171 Sum_probs=112.2
Q ss_pred CcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcC--ceeeEEeeCC--eeec------------
Q psy7039 119 STLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEP--FLNHGWSING--QVCQ------------ 182 (516)
Q Consensus 119 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p--~~~i~W~~~~--~~~~------------ 182 (516)
..+..+.+.+|+++.|.|.+. +.+ .+.+.|++++ ..+.
T Consensus 31 ~~p~~~~v~~G~~v~L~C~~~--------------------------g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~ 84 (282)
T 1qok_A 31 QQSGAELVRSGTSVKLSCTAS--------------------------GFNIKDSYMHWLRQGPEQGLEWIGWIDPENGDT 84 (282)
T ss_dssp EECCCEEEETTCCEEEEEEEE--------------------------SSCGGGSCEEEEEECTTCCEEEEEEEETTTTEE
T ss_pred ECCCCEEEeCCCeEEEEEecc--------------------------CCCCCCceEEEEEeCCCCCcEEEEEEecCCCcc
Confidence 344568899999999999998 653 5678888743 1110
Q ss_pred -----cCCceEEee--cCCeeEEEeccCCCCCCeeEEEEEEcCCC---ceE----EEEEeece----------------e
Q psy7039 183 -----IGGRADVQT--TKSETVLDIPFCSRSDTGHYSLTLENNLG---TAT----ASAHVTGT----------------E 232 (516)
Q Consensus 183 -----~~~~~~~~~--~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g---~~~----~~~~~~~~----------------~ 232 (516)
...|+.+.. .+...+|.|.+++.+|+|.|.|.+.|..| ... ..+.+... .
T Consensus 85 ~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~ 164 (282)
T 1qok_A 85 EYAPKFQGKATFTTDTSSNTAYLQLSSLTSEDTAVYYCNEGTPTGPYYFDYWGQGTTVTVSSGGGGSGGGGSGGGGSENV 164 (282)
T ss_dssp EECGGGBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEECSSSSCCCEEECCCEEEEEEC---------------CCC
T ss_pred ccCchhcCcEEEEEecCCCeEEEEECcCChhhCEEEEEEeccCCCccceeeeCCCEEEEEecCCcccCCccCCCCccceE
Confidence 124666554 33567999999999999999999998865 111 12222111 1
Q ss_pred e----eeccccCCceEEEEEEEEccCCCCCceeccccc-cc------------------ceEEEEEecceeeEEEccCCC
Q psy7039 233 F----TDNNVHEGKAYEYRVSAVNAAGTEKPKISLDAL-IG------------------KRIKEFVTSTTASLNIKNSVR 289 (516)
Q Consensus 233 ~----~~~~l~~g~~~~~~~~~~~~~g~p~p~i~W~~~-~~------------------~~~~~~~~~~~~~l~i~~l~~ 289 (516)
+ ....+.+|+.+.+.|.+ .|.+ +.+.|.+. .+ .++..........|.|.++..
T Consensus 165 ~~~~p~~~~v~~G~~v~L~C~~---~~~~-~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~ 240 (282)
T 1qok_A 165 LTQSPAIMSASPGEKVTITCSA---SSSV-SYMHWFQQKPGTSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISRMEA 240 (282)
T ss_dssp EEEECSEEEECTTCCEEEEEEE---SSCC-SCCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCG
T ss_pred EecCCCEEEEcCCCcEEEEEEe---cCCC-ceEEEEEECCCCCcEEEEEEecCCCCcccCCeEEecCCCEEEEEEccCCh
Confidence 1 12347789999999998 6777 89999662 11 222333344567899999999
Q ss_pred CCceEEEEEEEecCCCc-ceeEEEEEec
Q psy7039 290 KDSGIYKIEAKNDYGID-MADIEVVVVS 316 (516)
Q Consensus 290 ~d~g~y~c~a~n~~g~~-~~~~~l~v~~ 316 (516)
+|+|.|+|.|.|..+.. .....|.|..
T Consensus 241 ~DsG~Y~C~a~~~~~~~fg~gt~l~V~~ 268 (282)
T 1qok_A 241 EDAATYYCQQRSSYPLTFGAGTKLELKR 268 (282)
T ss_dssp GGCEEEEEEECSSSSCEECCCEEEEEC-
T ss_pred hHCEEEEEEEeeCCCceEeCCEEEEEec
Confidence 99999999998754321 2235666653
|
| >3ux9_B SCFV antibody; five helices, long loop connecting helix, hydrophobic intera cytokine-immune system complex; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.40 E-value=5.1e-12 Score=118.00 Aligned_cols=174 Identities=16% Similarity=0.193 Sum_probs=110.3
Q ss_pred ccccCCceEEEEEEEEccCCC--CCceecccccc-------------------cceEEEEEecceeeEEEccCCCCCceE
Q psy7039 236 NNVHEGKAYEYRVSAVNAAGT--EKPKISLDALI-------------------GKRIKEFVTSTTASLNIKNSVRKDSGI 294 (516)
Q Consensus 236 ~~l~~g~~~~~~~~~~~~~g~--p~p~i~W~~~~-------------------~~~~~~~~~~~~~~l~i~~l~~~d~g~ 294 (516)
..+.+|+.+.|.|.+ .+. +.+.+.|.+.. ..++..........|.|.+++.+|+|.
T Consensus 12 ~~v~~G~~v~L~C~~---~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~ 88 (256)
T 3ux9_B 12 VSGAPGQRVTISCSG---SSSNIGSNYVSWYQQLPGTAPKLLIYDNNQRPSGVPDRFSGSKSGTSASLAITGLQSEDEAD 88 (256)
T ss_dssp EEECTTCCEEEEEEC---CTTTTTTSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEECSCCGGGCEE
T ss_pred EEEcCCCcEEEEEec---CCCCCCCceEEEEEECCCCCCEEEEEecCCCCCCcCCcEEEEccCCEEEEEECCCChhhCEE
Confidence 456789999999998 555 77889996521 123344444556689999999999999
Q ss_pred EEEEEEecCCC---cceeEEEEEecCCCCCCCC--ceeeec--cCCeeEEEecCCCCCCCCceeeccccccccccccEEE
Q psy7039 295 YKIEAKNDYGI---DMADIEVVVVSKPGPPTGP--IDYTTV--TPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTV 367 (516)
Q Consensus 295 y~c~a~n~~g~---~~~~~~l~v~~~p~~p~~p--~~~~~~--~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v 367 (516)
|+|.+.|..+. ......|.|...+...... +..... ....+.+ .......+
T Consensus 89 Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~v 146 (256)
T 3ux9_B 89 YYCQVRDNNENEWVFGGGTKLTVLGSGGSTITSYNVYYTKLSSSGSEVQL----------------------VESGGGLV 146 (256)
T ss_dssp EEEEEEETTTTEEEECCCEEEEEC----------------------CCEE----------------------EEECCEEE
T ss_pred EEEEEEECCCCceEECCCEEEEEECCCCCcCccceeEEeecCCCccceeE----------------------EcCCCeEE
Confidence 99999986542 2234567776554321100 000000 0000001 11233458
Q ss_pred EcCCeEEEEEEEeeec--CCceEEEECC--eec-----------------CCCCceEEEEc--CCeEEEEEcCceecCCc
Q psy7039 368 LAGEEFTITVPFSGRP--KPTPIWTVNG--DEV-----------------SPDGRIKFETS--ENQTIYRNKSAKRATDS 424 (516)
Q Consensus 368 ~~g~~~~l~C~~~g~p--~~~i~W~~~~--~~l-----------------~~~~~~~~~~~--~~~~~l~i~~~~~~~~~ 424 (516)
.+|+.+.|.|.+.+.+ .+.+.|+++. ..+ ....++.+... .....|+|.++.. .|+
T Consensus 147 ~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~-~Ds 225 (256)
T 3ux9_B 147 QPGGSLRLSCAASGFTFSSYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMNSLRA-EDT 225 (256)
T ss_dssp CTTCCEEEEEEEESSCGGGSEEEEEEECTTCCEEEEEEECSSSSCEEECGGGTTTEEEEEETTTTEEEEEECSCCG-GGC
T ss_pred cCCCeEEEEEEEeCCcccccEEEEEEECCCCCcEEEEEEccCCCceecCccccceEEEEecCCCCEEEEEECCCCh-hhC
Confidence 8999999999998876 6799999863 211 01235655543 3456799999999 999
Q ss_pred eEEEEEEEcCC
Q psy7039 425 GSYTIQLVNTV 435 (516)
Q Consensus 425 g~y~c~a~n~~ 435 (516)
|.|+|.|.|..
T Consensus 226 G~Y~C~~~~~~ 236 (256)
T 3ux9_B 226 AVYYCARYIDF 236 (256)
T ss_dssp EEEEEEEEETT
T ss_pred EEEEEEEEcCC
Confidence 99999999974
|
| >2gee_A Hypothetical protein; fibronectin, EIIIB, cancer, neovascularization, cell adhesion, protein binding, oncoprotein; 2.01A {Homo sapiens} PDB: 2fnb_A | Back alignment and structure |
|---|
Probab=99.40 E-value=2.9e-11 Score=108.68 Aligned_cols=177 Identities=20% Similarity=0.263 Sum_probs=117.6
Q ss_pred ccCCCCCCCCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCC-CeEEeEEeecCCcEEEeCCCcCCCeEEE
Q psy7039 7 IKNPFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTG-NWEKAVVVPAGETSCTVPGLIEGETYQF 85 (516)
Q Consensus 7 ~~~~~~~p~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~-~~~~~~~~~~~~~~~~i~~l~~~~~y~~ 85 (516)
.....++| +|.+|.+..+++++|.|+|.+|. ++.+.+|.|+|...+. .+..........+++.|.+|.+++.|.|
T Consensus 17 ~~~~~~~P-~P~~l~~~~~~~~sv~lsW~~p~---~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~ 92 (203)
T 2gee_A 17 RGSHMEVP-QPTDLSFVDITDSSIGLRWTPLN---SSTIIGYRITVVAAGEGIPIFEDFVDSSVGYYTVTGLEPGIDYDI 92 (203)
T ss_dssp CCSSSCCC-CCEEEEEECCTTTCEEEEEECCS---SSSCCEEEEEEEESSSSSCCEEEEEETTCCEEEECSCCTTCEEEE
T ss_pred cCccccCc-CCCccEEEecCCCEEEEEecCCC---CCCccEEEEEEEECCCCCCceeEEcCCCccEEEeCCCCCCCEEEE
Confidence 34456788 89999999999999999999974 3468999999998765 3444445556789999999999999999
Q ss_pred EEEEecCCCCCCCCCCCcceEeccCCCCCccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeec
Q psy7039 86 QVRAVNAAGPGEASKPTAPIVAKPKNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKL 165 (516)
Q Consensus 86 ~~~a~n~~g~~~~s~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (516)
+|+|.|..|.+.+. . +.......+| ..|.+...
T Consensus 93 ~V~a~~~~g~s~~~---~-~~t~~~~p~P-----------------~~l~~~~~-------------------------- 125 (203)
T 2gee_A 93 SVYTVKNGGESTPT---T-LTQQTAVPPP-----------------TDLRFTNI-------------------------- 125 (203)
T ss_dssp EEEEESSSCBCCCE---E-EEEECCCCCC-----------------EEEEEEEE--------------------------
T ss_pred EEEEEeCCCccccE---e-eeecCCCcCC-----------------CceEEEEc--------------------------
Confidence 99999987765432 1 2221111122 12333332
Q ss_pred CcCceeeEEeeCCeeeccCCceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCc-eEE--EEEeeceeeeeccccCCc
Q psy7039 166 SEPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGT-ATA--SAHVTGTEFTDNNVHEGK 242 (516)
Q Consensus 166 ~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~-~~~--~~~~~~~~~~~~~l~~g~ 242 (516)
+.....+.|...... ... .|...+....+. ... ........+.+.+|.+|.
T Consensus 126 ~~~sv~l~W~~p~~~--~i~------------------------~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t 179 (203)
T 2gee_A 126 GPDTMRVTWAPPPSI--DLT------------------------NFLVRYSPVKNEEDVAELSISPSDNAVVLTNLLPGT 179 (203)
T ss_dssp ETTEEEEEEECCSSC--CCS------------------------EEEEEEEETTCGGGCEEEEECTTCCEEEECSCCTTC
T ss_pred CCCEEEEEEcCCCCC--Ccc------------------------EEEEEEEECCCCCccEEEEcCCCcCEEEECCCCCCC
Confidence 445667888764211 001 344444432221 111 112234567888999999
Q ss_pred eEEEEEEEEccCCCCCce
Q psy7039 243 AYEYRVSAVNAAGTEKPK 260 (516)
Q Consensus 243 ~~~~~~~~~~~~g~p~p~ 260 (516)
.|.+++.|.+..|...|.
T Consensus 180 ~Y~~~V~A~~~~g~s~p~ 197 (203)
T 2gee_A 180 EYVVSVSSVYEQHESTPL 197 (203)
T ss_dssp EEEEEEEEEETTEECCCE
T ss_pred EEEEEEEEecCCCcCCCe
Confidence 999999999988876654
|
| >2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.40 E-value=2.8e-12 Score=104.45 Aligned_cols=108 Identities=21% Similarity=0.315 Sum_probs=88.4
Q ss_pred CCCCCCCCCcceEeccCCCCCccccC--cccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCcee
Q psy7039 94 GPGEASKPTAPIVAKPKNLAPRIDRS--TLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLN 171 (516)
Q Consensus 94 g~~~~s~~~~~~~~~~~~~~p~~~~~--~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 171 (516)
|.+.++.....+.+.....+|.|... ....+.+.+|+.+.|.|.+. |.|.+.
T Consensus 2 G~s~p~~~~~~v~~~~v~~~P~i~~~~~~~~~~~v~~G~~~~l~C~~~--------------------------g~P~p~ 55 (118)
T 2e7c_A 2 SSGSSGTLAQPVTIREIAEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQ--------------------------GKPRPQ 55 (118)
T ss_dssp CCCCCCCCCCCCCCCCCSEEEEECCCTTTSSCEEEESSSCEEEEEEEE--------------------------EESCCE
T ss_pred CcCCccccCCCEEEEeeccCCeEecCcccCCCEEEECCCEEEEEEEEc--------------------------cCCCCE
Confidence 66777777766766666677887522 45778999999999999999 999999
Q ss_pred eEEeeCCeeeccCCceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEEe
Q psy7039 172 HGWSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHV 228 (516)
Q Consensus 172 i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~ 228 (516)
+.|++++..+. ..++.+...+....|.|.+++.+|+|.|+|.+.|..|.......+
T Consensus 56 i~W~k~g~~l~-~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l 111 (118)
T 2e7c_A 56 VVWTKGGAPLD-TSRVHVRTSDFDTVFFVRQAARSDSGEYELSVQIENMKDTATIRI 111 (118)
T ss_dssp EEEEETTEECC-CSSCEEEECSSEEEEEESSCCTTTCEEEEEEEECSSCEECCEEEE
T ss_pred EEEEECCEECC-CCcEEEEECCCeEEEEECCCChhcCEEEEEEEEeCCCeEEEEEEE
Confidence 99999999886 566777667777889999999999999999999999876555443
|
| >1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L* | Back alignment and structure |
|---|
Probab=99.40 E-value=1.6e-12 Score=117.42 Aligned_cols=158 Identities=9% Similarity=0.015 Sum_probs=106.6
Q ss_pred ccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCC--eee------------ccCCc
Q psy7039 121 LNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSING--QVC------------QIGGR 186 (516)
Q Consensus 121 ~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~--~~~------------~~~~~ 186 (516)
+..+.+.+|+.+.|.|.+. +.|.+.+.|+++. ..+ ....|
T Consensus 7 p~~~~v~~G~~v~L~C~~~--------------------------~~~~~~v~W~~~~~g~~~~~~~~~~~~~~~~~~~r 60 (210)
T 1lk3_L 7 PPALTVSPGEKLTISCKAS--------------------------ESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPAR 60 (210)
T ss_dssp CSEEEECTTSCEEEEEEES--------------------------SCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTT
T ss_pred CCcEEEcCCCCEEEEeeCC--------------------------CccCCCEEEEEECCCCCeEEEEEccccccCCcccc
Confidence 6678899999999999999 7777889998832 221 11356
Q ss_pred eEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCceEE---EEEeec----eeeee----ccccCCceEEEEEEEEccCC
Q psy7039 187 ADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATA---SAHVTG----TEFTD----NNVHEGKAYEYRVSAVNAAG 255 (516)
Q Consensus 187 ~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~---~~~~~~----~~~~~----~~l~~g~~~~~~~~~~~~~g 255 (516)
+.+...+....|.|.+++.+|+|.|.|.+.+..+.... .+.+.. ..+.. .....|..+.+.|.+ .|
T Consensus 61 ~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~l~C~~---~g 137 (210)
T 1lk3_L 61 FSGSGSGTDFTLTIDPVEADDTAIYFCQQSWNGPLTFGAGTKLELKRADAAPTVSIFPPSTEQLATGGASVVCLM---NN 137 (210)
T ss_dssp EEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEECCCCBCCEEEEECCCHHHHTTTEEEEEEEE---EE
T ss_pred EEEEecCCEEEEEECCCCHHHCeEEEEEEEcCCCceeCCCEEEEEcCCCcCCeEEEECCchhhccCCcEEEEEEE---Ee
Confidence 66665566779999999999999999999987654321 222221 11111 113368899999998 44
Q ss_pred -CCCc-eeccccccc----c-eEEE--EEecc-----eeeEEEccCCCCCceEEEEEEEecCCCcc
Q psy7039 256 -TEKP-KISLDALIG----K-RIKE--FVTST-----TASLNIKNSVRKDSGIYKIEAKNDYGIDM 307 (516)
Q Consensus 256 -~p~p-~i~W~~~~~----~-~~~~--~~~~~-----~~~l~i~~l~~~d~g~y~c~a~n~~g~~~ 307 (516)
.|++ .+.|.+... . .... ..... ...|.|..+..+|+|.|+|.|.|......
T Consensus 138 ~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~ 203 (210)
T 1lk3_L 138 FYPRDISVKWKIDGTERRDGVLDSVTDQDSKDSTYSMSSTLSLTKADYESHNLYTCEVVHKTSSSP 203 (210)
T ss_dssp EBSSCCEEEEEETTEECCTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTTCSSC
T ss_pred EeCCceEEEEEeCCccCCCCceEccCCccCCCCCEEEEEEEEEChHHhccCCcEEEEEEecCCCCe
Confidence 3443 899965211 1 0100 00111 23789999999999999999999866543
|
| >3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.40 E-value=8.5e-12 Score=116.75 Aligned_cols=153 Identities=14% Similarity=0.186 Sum_probs=89.8
Q ss_pred ceeeEEEccCCCCCceEEEEEEEecCCC---cceeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeecc
Q psy7039 278 TTASLNIKNSVRKDSGIYKIEAKNDYGI---DMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAP 354 (516)
Q Consensus 278 ~~~~l~i~~l~~~d~g~y~c~a~n~~g~---~~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~ 354 (516)
....|.|.+++.+|+|.|+|.+.|..+. ......|.|...+..+.. .. +.++.......+
T Consensus 77 ~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~-~~------------~~~~~~~~~~~v---- 139 (259)
T 3omz_A 77 KNLRMILRNLIENDSGVYYCATWDQNYYKKLFGSGTSLVVTDKQGSADD-AK------------KDAAKKDGAQKV---- 139 (259)
T ss_dssp CCCEEEESSCCGGGCEEEEEEEECTTSSCEEECCCEEEEEEC-------------------------------CEE----
T ss_pred CeEEEEECCCCcccCEEEEEEEeeCCccccEECCCCEEEEecCCCCccc-cc------------cccccccCCeee----
Confidence 4568999999999999999999987652 333456666654322210 00 000000000000
Q ss_pred ccccccccccEEEEcCCeEEEEEEEeee-cCCceEEEECCe--ec------------CCCCceEEE--EcCCeEEEEEcC
Q psy7039 355 KITSDLSIRDMTVLAGEEFTITVPFSGR-PKPTPIWTVNGD--EV------------SPDGRIKFE--TSENQTIYRNKS 417 (516)
Q Consensus 355 ~~~~~~~~~~~~v~~g~~~~l~C~~~g~-p~~~i~W~~~~~--~l------------~~~~~~~~~--~~~~~~~l~i~~ 417 (516)
...+....+.+|+.+.|.|.+.+. +.+.+.|++... .+ ....++.+. .......|+|.+
T Consensus 140 ----~~~p~~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~ 215 (259)
T 3omz_A 140 ----TQAQSSVSMPVRKAVTLNCLYETSWWSYYIFWYKRLPSKEMIFLIRQGSDEQNAKSGRYSVNFKKAAKSVALTISA 215 (259)
T ss_dssp ----ECCCCCEEEETTCCEEECCEEECCCSSCEEEEEEECTTCCEEEEEEEETTSCCCEETTEEECCBGGGTBCCEEESS
T ss_pred ----EEeCCEEEEcCCCCEEEEEECCCccCCceEEEeeeCCCCCcEEEEEECCcCCcccCCeEEEEEcCcCCEEEEEECC
Confidence 023355788999999999998875 778999998532 10 012344443 223445799999
Q ss_pred ceecCCceEEEEEEEcCCCc-----eeEEEEEEEecCCCC
Q psy7039 418 AKRATDSGSYTIQLVNTVGS-----DSASCKVYVVDKPSP 452 (516)
Q Consensus 418 ~~~~~~~g~y~c~a~n~~G~-----~s~s~~l~v~~~p~~ 452 (516)
+.. .|+|.|.|.+.+..+. -..-..|.|...+.+
T Consensus 216 v~~-~DsG~Y~C~~~~~~~~~~~~~fg~GT~l~v~~~~~~ 254 (259)
T 3omz_A 216 LQL-EDSAKYFCALGESLTRADKLIFGKGTRVTVEPRSQH 254 (259)
T ss_dssp CCG-GGCSEEEEEEESCSSTTCCCEECCCEEEEEEC----
T ss_pred CCh-hHCEEEEEEEeCccCCCCceEECCCCEEEEeeCccc
Confidence 999 9999999999864221 122256777655443
|
| >1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex (immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 | Back alignment and structure |
|---|
Probab=99.40 E-value=2.7e-13 Score=122.82 Aligned_cols=164 Identities=13% Similarity=0.105 Sum_probs=107.5
Q ss_pred ccccCCceEEEEEEEEccCCCCCceecccccc-------------------cceEEEEEecceeeEEEccCCCCCceEEE
Q psy7039 236 NNVHEGKAYEYRVSAVNAAGTEKPKISLDALI-------------------GKRIKEFVTSTTASLNIKNSVRKDSGIYK 296 (516)
Q Consensus 236 ~~l~~g~~~~~~~~~~~~~g~p~p~i~W~~~~-------------------~~~~~~~~~~~~~~l~i~~l~~~d~g~y~ 296 (516)
..+.+|+.+.|.|.+ .+.+.+.+.|.+.. ..++.+........|.|.+++.+|+|.|+
T Consensus 9 ~~v~~G~~v~L~C~~---~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~ 85 (212)
T 1nfd_E 9 ASVTVGETVKITCSG---DQLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTSGTTATLTISGAQPEDEAAYY 85 (212)
T ss_dssp EEEETTSCCCEEEEE---TTGGGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGCSEEE
T ss_pred EEEeCCCcEEEEEec---CCCCCCeEEEEEECCCCCcEEEEEeccccCCCccccEEEEeeCCEEEEEECcCCcccCEEEE
Confidence 346789999999996 67777889995421 12333344456679999999999999999
Q ss_pred EEEEecCC-C--cceeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeE
Q psy7039 297 IEAKNDYG-I--DMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEF 373 (516)
Q Consensus 297 c~a~n~~g-~--~~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~ 373 (516)
|.|.|..+ . ......+.|...+..+.. +.+ ......+..|+.+
T Consensus 86 C~~~n~~~~~~~~~~~~~l~V~~~~~~~p~-v~~---------------------------------~~~~~~~~~g~~v 131 (212)
T 1nfd_E 86 CLSSYGDNNDLVFGSGTQLTVLRGPKSSPK-VTV---------------------------------FPPSPEELRTNKA 131 (212)
T ss_dssp EEEEETTTTEEEECCCEEEEEECCCCBCCE-EEC---------------------------------CCCCHHHHHTTEE
T ss_pred EEEEcccCcccccCCceEEEEccCCCCCCE-EEe---------------------------------eCCchHhccCCce
Confidence 99997322 1 122345566443321110 000 0011123468899
Q ss_pred EEEEEEeee-cC-CceEEEECCeecCCCCceE-EEEcCC----eEEEEEcCceecCCceEEEEEEEcCCCc
Q psy7039 374 TITVPFSGR-PK-PTPIWTVNGDEVSPDGRIK-FETSEN----QTIYRNKSAKRATDSGSYTIQLVNTVGS 437 (516)
Q Consensus 374 ~l~C~~~g~-p~-~~i~W~~~~~~l~~~~~~~-~~~~~~----~~~l~i~~~~~~~~~g~y~c~a~n~~G~ 437 (516)
.|.|.+.|. |. +.+.|++++..+....... .....+ .+.|.|.++.. +|.|.|+|.|.|..+.
T Consensus 132 ~L~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~-~d~G~Y~C~a~n~~~~ 201 (212)
T 1nfd_E 132 TLVCLVNDFYPGSATVTWKANGATINDGVKTTKPSKQGQNYMTSSYLSLTADQW-KSHNRVSCQVTHEGET 201 (212)
T ss_dssp CCCEEEEEEBSSCCEEEEEETTEEECSSCBCCCCBCSSSCEEEEEBCCEEHHHH-HTCSCEEEEEECTTTT
T ss_pred EEEEEEEeeECCccEEEEEECCeEcCCCeecCCceecCCCceEEEEEEEchhhc-CCCCeEEEEEEeCCce
Confidence 999999988 44 6999999998775432110 000010 24588999999 9999999999999875
|
| >2ibg_A CG9211-PA, GH03927P; IHOG, fibronectin type III, protein binding; 2.20A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1 PDB: 2ibb_A | Back alignment and structure |
|---|
Probab=99.40 E-value=1.2e-11 Score=112.06 Aligned_cols=92 Identities=26% Similarity=0.429 Sum_probs=72.8
Q ss_pred CCCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCC--CCeEEeEE-ee----------cCCcEEEeCCCcCC
Q psy7039 14 PGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKT--GNWEKAVV-VP----------AGETSCTVPGLIEG 80 (516)
Q Consensus 14 p~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~--~~~~~~~~-~~----------~~~~~~~i~~l~~~ 80 (516)
|.||.++++..+++++|.|+|.+|..+ ++++.+|.|+|+..+ +.|..... .+ ....++.|.+|.++
T Consensus 2 ~~pP~~~~~~~~~~~sv~l~W~~p~~~-~~~i~~Y~v~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~ 80 (214)
T 2ibg_A 2 TYPPTPPNVTRLSDESVMLRWMVPRND-GLPIVIFKVQYRMVGKRKNWQTTNDNIPYGKPKWNSELGKSFTASVTDLKPQ 80 (214)
T ss_dssp CCCCCCCEEEEEETTEEEEEEEEECCS-SCCEEEEEEEEEESSSSCCCEECSCCEECCSSSCSSSSEEEEEEEECSCCTT
T ss_pred CCCCCCCEeeEecCCEEEEEEECCCCC-CCCceEEEEEEEECCCCCcCcccccccCccccccccccCcceeEEecCCcCC
Confidence 568888889999999999999998644 468999999999854 37876542 11 34678899999999
Q ss_pred CeEEEEEEEecCCCCCCCCCCCcceE
Q psy7039 81 ETYQFQVRAVNAAGPGEASKPTAPIV 106 (516)
Q Consensus 81 ~~y~~~~~a~n~~g~~~~s~~~~~~~ 106 (516)
+.|.|+|+|.|..|.+..+.....+.
T Consensus 81 t~Y~~~V~A~n~~g~~~~s~~s~~~~ 106 (214)
T 2ibg_A 81 HTYRFRILAVYSNNDNKESNTSAKFY 106 (214)
T ss_dssp CEEEEEEEEEETTSCEEECCCCCCEE
T ss_pred CEEEEEEEEEecCCCCCCCCCcccEE
Confidence 99999999999998876665444443
|
| >1v5j_A KIAA1355 protein, RSGI RUH-008; FN3 domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, cell adhesion; NMR {Homo sapiens} SCOP: b.1.2.1 | Back alignment and structure |
|---|
Probab=99.40 E-value=8.3e-13 Score=104.77 Aligned_cols=89 Identities=29% Similarity=0.437 Sum_probs=75.9
Q ss_pred CCCCCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCCCeEEeEE-eecCCcEEEeCCCcCCCeEEEEEEEe
Q psy7039 12 DEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVV-VPAGETSCTVPGLIEGETYQFQVRAV 90 (516)
Q Consensus 12 ~~p~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~~~~~~~~-~~~~~~~~~i~~l~~~~~y~~~~~a~ 90 (516)
++|++|.+|.+.. ..+++.|+|.+|. +++++|.+|.|+|+..++.|..... .....+++++.+|.++..|.|||.|.
T Consensus 6 ep~~pP~~l~v~~-~~~sv~L~W~pP~-~~~~~I~gY~vey~~~~~~W~~~~~~~~~~~t~~~v~~L~pg~~Y~FRV~A~ 83 (108)
T 1v5j_A 6 SGLSPPRGLVAVR-TPRGVLLHWDPPE-LVPKRLDGYVLEGRQGSQGWEVLDPAVAGTETELLVPGLIKDVLYEFRLVAF 83 (108)
T ss_dssp CCCCCCEEEEEEE-CSSSEEEEEECCS-CCSSCCCBEEEEEEETTCCCEEEEEEECSSCCEEECCCCCTTSCEECCBEEE
T ss_pred CCCCCCcceEEEE-eCCEEEEEECCCC-CCCCCCcEEEEEEEeCCCCcEEeeeecCCCcCEEEeCCCCCCCEEEEEEEEE
Confidence 4569999999975 5788999999996 5788999999999995558987654 34678999999999999999999999
Q ss_pred cCCCCCCCCCCC
Q psy7039 91 NAAGPGEASKPT 102 (516)
Q Consensus 91 n~~g~~~~s~~~ 102 (516)
|..|.+.++...
T Consensus 84 n~~G~s~pS~~~ 95 (108)
T 1v5j_A 84 AGSFVSDPSNTA 95 (108)
T ss_dssp ETTEEEEECSCC
T ss_pred cCCCCcCCCCCE
Confidence 999998877543
|
| >2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A | Back alignment and structure |
|---|
Probab=99.40 E-value=1.9e-12 Score=118.58 Aligned_cols=155 Identities=17% Similarity=0.132 Sum_probs=101.1
Q ss_pred CcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCc-eeeEEeeCCeeec---------cCCce-
Q psy7039 119 STLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPF-LNHGWSINGQVCQ---------IGGRA- 187 (516)
Q Consensus 119 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~i~W~~~~~~~~---------~~~~~- 187 (516)
..+..+.+.+|+.+.|.|.+. +.+. +.+.|++++.... ....+
T Consensus 5 ~~p~~~~v~~G~~v~L~C~~~--------------------------~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~ 58 (231)
T 2pet_A 5 SVPPLVEVMRGKSVILDCTPT--------------------------GTHDHYMLEWFLTDRSGARPRLASAEMQGSELQ 58 (231)
T ss_dssp CCCSEEEEETTCCEEECCCCB--------------------------SCCSEEEEEEEEECTTCCCCEEEEEEEETTEEE
T ss_pred cCCCcEEEEcCCCEEEecccC--------------------------CCCCceEEEEEEeCCCceeEEEEeccccCCccc
Confidence 456678899999999999999 7774 8999997543311 11111
Q ss_pred -EEe----------ecCCeeEEEeccCCCCCCeeEEEEEEcCC-CceEEEEEeecee------ee----eccccCCceE-
Q psy7039 188 -DVQ----------TTKSETVLDIPFCSRSDTGHYSLTLENNL-GTATASAHVTGTE------FT----DNNVHEGKAY- 244 (516)
Q Consensus 188 -~~~----------~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~-g~~~~~~~~~~~~------~~----~~~l~~g~~~- 244 (516)
++. .. ....|.|.+++.+|+|.|+|.+.+.. +.......+.+.. +. ...+..|...
T Consensus 59 ~r~~~~~~~~~~~~~~-~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~g~~~~ 137 (231)
T 2pet_A 59 VTMHDTRGRSPPYQLD-SQGRLVLAEAQVGDERDYVCVVRAGAAGTAEATARLNVFAKPEATEVSPNKGTLSVMEDSAQE 137 (231)
T ss_dssp EEECCCSCCSSCCEEC-TTCCEEESSCCGGGCEEEEEEEECGGGCEEEEEEEEEEEBCCCCCEEEECCSSCCTTCCSEEE
T ss_pred cccccccccccccccC-CCceEEEcccCcccCceEEEEEEecCCCceEEEEEEEEEecCCCcEEecCCcceeecCCCceE
Confidence 111 11 12349999999999999999999886 5555444333221 11 1224578777
Q ss_pred EEEEEEEccCCCCCceecccccc-----c----ceEEEEEe---cc------eeeEEEccCCCCCceEEEEEEEec
Q psy7039 245 EYRVSAVNAAGTEKPKISLDALI-----G----KRIKEFVT---ST------TASLNIKNSVRKDSGIYKIEAKND 302 (516)
Q Consensus 245 ~~~~~~~~~~g~p~p~i~W~~~~-----~----~~~~~~~~---~~------~~~l~i~~l~~~d~g~y~c~a~n~ 302 (516)
.+.|.+. .|.|.|.+.|.+.. . .+..+... .. ...|.|.....+|.|.|+|.|.|.
T Consensus 138 ~l~C~~~--~~~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~L~i~~~~~dd~g~Y~C~a~n~ 211 (231)
T 2pet_A 138 IATCNSR--NGNPAPKITWYRNGQRLEVPVEMNPEGYMTSRTVREASGLLSLTSTLYLRLRKDDRDASFHCAAHYS 211 (231)
T ss_dssp EEEEEEE--EEBSCCEEEEEETTEECCCCSSCCSSEEEEEEEEECTTSCEEEEEEEEEECCGGGGGCEEEEEEEEE
T ss_pred EEEEEeE--CcccCCEEEEEECCccCccccccccceeecceeEecCCCeEEEEEEEEEecchhhCCceEEEEEEcC
Confidence 9999873 56789999996511 1 12222110 11 156788766666799999999994
|
| >2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.39 E-value=4.1e-12 Score=112.74 Aligned_cols=127 Identities=20% Similarity=0.235 Sum_probs=100.5
Q ss_pred CCcEEEeCCCcCCCeEEEEEEEecCCCCCCCCCCCcceEeccCCCCCccccCcccceEEecCCeEEEEEeeeeccccccC
Q psy7039 68 GETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKS 147 (516)
Q Consensus 68 ~~~~~~i~~l~~~~~y~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~ 147 (516)
....|.|.+++..|.|.|+|.|.|. |... ....+.+. .+|.+. ..+....+.+|+.+.|.|.+.
T Consensus 54 ~~~~L~i~~~~~~d~G~Y~C~~~n~-~~~~---~~~~l~V~---~~p~~~-~~~~~~~~~~g~~v~l~C~~~-------- 117 (190)
T 2wv3_A 54 SNMEYRINKPRAEDSGEYHCVYHFV-SAPK---ANATIEVK---AAPDIT-GHKRSENKNEGQDAMMYCKSV-------- 117 (190)
T ss_dssp SEEEEEESSCCGGGCEEEEEEEEET-TEEE---EEEEEEEE---CCCEEE-EECSEEEEETTSCEEEEEEEE--------
T ss_pred ccEEEEEecCCcccCEEEEEEEEeC-Cccc---ccEEEEEe---cCCccc-ccCCcceeeCCCcEEEEEEeC--------
Confidence 3578999999999999999999987 4321 12222222 357666 455667899999999999999
Q ss_pred ccccccccccCccceeecCcCceeeEEee--CCeeec---cCCceEEeecCCeeEEEeccCC-CCCCeeEEEEEEcCCCc
Q psy7039 148 PLRALGVRANSTKGWVKLSEPFLNHGWSI--NGQVCQ---IGGRADVQTTKSETVLDIPFCS-RSDTGHYSLTLENNLGT 221 (516)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~p~~~i~W~~--~~~~~~---~~~~~~~~~~~~~~~l~i~~~~-~~d~g~Y~c~~~~~~g~ 221 (516)
|.|.+.+.|++ ++..+. ...++.+...+....|.|.+++ .+|+|.|+|.+.|..|.
T Consensus 118 ------------------g~p~p~i~W~~~~~g~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~N~~g~ 179 (190)
T 2wv3_A 118 ------------------GYPHPEWMWRKKENGVFEEISNSSGRFFIINKENYTELNIVNLQITEDPGEYECNATNSIGS 179 (190)
T ss_dssp ------------------CSSCCEEEEEEEETTEEEECCCTTSCEEEEECSSEEEEEECSCCTTTSCEEEEEEEECSSCE
T ss_pred ------------------ccCCCceEEEEcCCCceeeeecCCCeEEEecCCCeeEEEEEeccccCCCEEEEEEEEecCCc
Confidence 99999999999 777664 4567777777777899999999 79999999999999998
Q ss_pred eEEEEEe
Q psy7039 222 ATASAHV 228 (516)
Q Consensus 222 ~~~~~~~ 228 (516)
......+
T Consensus 180 ~~~~~~l 186 (190)
T 2wv3_A 180 ASVSTVL 186 (190)
T ss_dssp EEEEEEE
T ss_pred ceeEEEE
Confidence 7766544
|
| >1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.39 E-value=5.8e-12 Score=117.56 Aligned_cols=173 Identities=12% Similarity=0.062 Sum_probs=109.0
Q ss_pred CCCccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCce-EEe
Q psy7039 112 LAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRA-DVQ 190 (516)
Q Consensus 112 ~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~-~~~ 190 (516)
.+|.|. ..+. ..+.+|++++|.|.+. + +.+.+.|++++..+...... ...
T Consensus 6 ~kP~i~-~~P~-~~V~~G~~VtL~C~~~--------------------------~-~~~~~~W~k~g~~~~~~~~~~~~~ 56 (257)
T 1b6u_A 6 RKPSLL-AHPG-PLVKSEETVILQCWSD--------------------------V-RFQHFLLHREGKFKDTLHLIGEHH 56 (257)
T ss_dssp CCCEEC-CBSC-SEEESSCCEEEEEEES--------------------------S-CCSEEEEEEESTTCEEEEEECBCC
T ss_pred CCCEEE-EcCC-CEecCCCCEEEEEecC--------------------------C-CCcEEEEEECCCCCCcceeeeecc
Confidence 356665 3333 6788999999999987 4 35689999987654321100 001
Q ss_pred ecCCeeEEEeccCCCCCCeeEEEEEEcCCC-------ceEEEEEeec----eeee---eccccCCceEEEEEEEEccCCC
Q psy7039 191 TTKSETVLDIPFCSRSDTGHYSLTLENNLG-------TATASAHVTG----TEFT---DNNVHEGKAYEYRVSAVNAAGT 256 (516)
Q Consensus 191 ~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g-------~~~~~~~~~~----~~~~---~~~l~~g~~~~~~~~~~~~~g~ 256 (516)
.......|.|.+++.+|+|.|+|.+.+..+ .....+.+.. ..+. ...+.+|+.+.|.|.+ .+.
T Consensus 57 ~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~~~~~~s~~S~~~~L~V~~~~~~P~l~~~p~~~V~~G~~vtL~C~~---~~~ 133 (257)
T 1b6u_A 57 DGVSKANFSIGPMMQDLAGTYRCYGSVTHSPYQLSAPSDPLDIVITGLYEKPSLSAQPGPTVLAGESVTLSCSS---RSS 133 (257)
T ss_dssp TTCEEEEEEECSCCTTTCEEEEEEEECSSCTTSCCCCCCCEEEEEECSSCCCEEECSSCTTCBTTCEEEEEEEC---SSC
T ss_pred CCCceEEEEeecCCcccCEEEEEeEeccCCCccccccCCCEEEecccCCCCcceEccCCCccCCCCEEEEEEeC---CCC
Confidence 123457899999999999999999986421 1122233321 1111 2357889999999997 554
Q ss_pred CCceecccccccceEE----EEE--ecceeeEEEccCCCCCceEEEEEEEecCC-----CcceeEEEEEecCCC
Q psy7039 257 EKPKISLDALIGKRIK----EFV--TSTTASLNIKNSVRKDSGIYKIEAKNDYG-----IDMADIEVVVVSKPG 319 (516)
Q Consensus 257 p~p~i~W~~~~~~~~~----~~~--~~~~~~l~i~~l~~~d~g~y~c~a~n~~g-----~~~~~~~l~v~~~p~ 319 (516)
.+.+.|.+....... ... ......|.|.+++ |+|.|+|.|.+... ..+..+.|.|...|.
T Consensus 134 -~~~~~w~k~g~~~~~~~~~~~~~~~~~~~~l~I~~v~--D~G~Y~C~a~~~~~p~~~s~~S~pl~L~V~g~p~ 204 (257)
T 1b6u_A 134 -YDMYHLSREGEAHERRFSAGPKVNGTFQADFPLGPAT--HGGTYRCFGSFRDSPYEWSNSSDPLLVSVTGNPS 204 (257)
T ss_dssp -CSEEEEEETTSSCEECCBCBCCSSSCCBEEEEEEECC--SCEEEEEEEECSSCTTBBCCCCCCEEECCBCCC-
T ss_pred -CcEEEEEECCcccCcccccccccCCceeEEEEecccc--cCEEEEEEEEcCCCCcccccCCCCEEEEEeccCC
Confidence 468888653221110 000 1236789999998 99999999997532 223456677766543
|
| >1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A | Back alignment and structure |
|---|
Probab=99.39 E-value=1.1e-11 Score=111.23 Aligned_cols=156 Identities=10% Similarity=0.036 Sum_probs=101.5
Q ss_pred CCCccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCce-EEe
Q psy7039 112 LAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRA-DVQ 190 (516)
Q Consensus 112 ~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~-~~~ 190 (516)
.+|.|. ..+. ..+.+|+.++|.|.+. + +.+.+.|++++..+....+. ...
T Consensus 7 ~~P~i~-~~p~-~~v~~G~~v~L~C~~~--------------------------~-~~~~~~w~k~g~~~~~~~~~~~~~ 57 (201)
T 1nkr_A 7 RKPSLL-AHPG-PLVKSEETVILQCWSD--------------------------V-MFEHFLLHREGMFNDTLRLIGEHH 57 (201)
T ss_dssp CCCEEE-EESC-SEEETTCCEEEEEEES--------------------------S-CCSEEEEEEESSSCEEEEEECEEE
T ss_pred CCCeEE-EEcC-CccCCCCcEEEEEecc--------------------------C-CCCEEEEEECCCcCCcceeeeecC
Confidence 356555 2233 6788999999999987 4 56789999988755421111 111
Q ss_pred ecCCeeEEEeccCCCCCCeeEEEEEEcCCC-----c--eEEEEEeec----eee---eeccccCCceEEEEEEEEccCCC
Q psy7039 191 TTKSETVLDIPFCSRSDTGHYSLTLENNLG-----T--ATASAHVTG----TEF---TDNNVHEGKAYEYRVSAVNAAGT 256 (516)
Q Consensus 191 ~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g-----~--~~~~~~~~~----~~~---~~~~l~~g~~~~~~~~~~~~~g~ 256 (516)
.......|.|.+++.+|+|.|+|.+.+... . ....+.+.. ..+ ....+.+|+.+.|.|.+ .+
T Consensus 58 ~~~~~~~l~I~~v~~~D~G~Y~C~a~~~~~~~~~~~~s~~~~l~V~~~~~~p~i~~~p~~~v~~G~~v~L~C~~---~~- 133 (201)
T 1nkr_A 58 DGVSKANFSISRMTQDLAGTYRCYGSVTHSPYQVSAPSDPLDIVIIGLYEKPSLSAQPGPTVLAGENVTLSCSS---RS- 133 (201)
T ss_dssp TTEEEEEEEESSCCGGGCEEEEEEEEBTTBTTCCCCCCCCEEEEEECSSCCCEEEEESCSEECTTCEEEEEEEE---SS-
T ss_pred CCCceEEEEeccCCcccCeEEEEeEecCCCCccccCCCCCEEEEeeccCCCCceecCCCCccCCCCeEEEEEeC---CC-
Confidence 123457899999999999999999986421 1 122233221 111 12357899999999998 44
Q ss_pred CCceecccccccceE----EEEEe--cceeeEEEccCCCCCceEEEEEEEec
Q psy7039 257 EKPKISLDALIGKRI----KEFVT--STTASLNIKNSVRKDSGIYKIEAKND 302 (516)
Q Consensus 257 p~p~i~W~~~~~~~~----~~~~~--~~~~~l~i~~l~~~d~g~y~c~a~n~ 302 (516)
+.+.+.|.+...... ..... .....|.|.+++ |+|.|+|.|.+.
T Consensus 134 ~~~~~~w~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~--d~G~Y~C~a~~~ 183 (201)
T 1nkr_A 134 SYDMYHLSREGEAHERRLPAGPKVNGTFQADFPLGPAT--HGGTYRCFGSFH 183 (201)
T ss_dssp CCSEEEEEETTCSSCEEEECEEEETTEEEEEEEEEECC--SCEEEEEEEEET
T ss_pred CCceEEEEECCcccCcccccccccCCceEEEEEeCCcC--CCeeEEEEEEcC
Confidence 467888965322111 01111 126789999998 999999999865
|
| >2yrz_A Integrin beta-4; GP150, CD104 antigen, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.39 E-value=1.6e-12 Score=105.86 Aligned_cols=96 Identities=25% Similarity=0.408 Sum_probs=82.9
Q ss_pred cceeccCCCCCCCCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCC-CeEEeEEeecCCcEEEeCCCcCCC
Q psy7039 3 HSVLIKNPFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTG-NWEKAVVVPAGETSCTVPGLIEGE 81 (516)
Q Consensus 3 ~~~~~~~~~~~p~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~-~~~~~~~~~~~~~~~~i~~l~~~~ 81 (516)
..+.++++++.|++|.+|++..++.++|.|+|.+|..+ +.|.+|+|+|+..+. .|..........+.++|.+|++++
T Consensus 7 ~~~~~~t~~~~P~~P~~l~~~~~~~~sv~l~W~~p~~~--g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t 84 (118)
T 2yrz_A 7 GSHDSRLTAGVPDTPTRLVFSALGPTSLRVSWQEPRCE--RPLQGYSVEYQLLNGGELHRLNIPNPAQTSVVVEDLLPNH 84 (118)
T ss_dssp SCCTTSSSCSCCCCCCCCEECCCBTTEEEEECCCCCCS--SCEEEEEEEEEBSSSCCEEEEEESCTTCCEEEEESCCTTC
T ss_pred CcceeecCCCCCCCCCceEEEeCCCCEEEEEeCCCCCC--CCccEEEEEEEECCCCceEEEEcCCCCcCEEEeCCCCCCC
Confidence 45678899999999999999999999999999998644 379999999998665 676665555678999999999999
Q ss_pred eEEEEEEEecCCCCCCCCC
Q psy7039 82 TYQFQVRAVNAAGPGEASK 100 (516)
Q Consensus 82 ~y~~~~~a~n~~g~~~~s~ 100 (516)
.|.|+|+|.|..|.+.++.
T Consensus 85 ~Y~~~V~A~n~~G~g~~S~ 103 (118)
T 2yrz_A 85 SYVFRVRAQSQEGWGRERE 103 (118)
T ss_dssp EEEEEEEEEESSCEEEEEE
T ss_pred EEEEEEEEEcCCcCCCCcC
Confidence 9999999999999887654
|
| >2gjj_A A21 single-chain antibody fragment against ERBB2; IG family, SCFV, immune system; 2.10A {Mus musculus} PDB: 3h3b_C | Back alignment and structure |
|---|
Probab=99.39 E-value=1e-11 Score=116.60 Aligned_cols=155 Identities=17% Similarity=0.153 Sum_probs=106.8
Q ss_pred CcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcC------ceeeEEeeC--Ceeec--------
Q psy7039 119 STLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEP------FLNHGWSIN--GQVCQ-------- 182 (516)
Q Consensus 119 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p------~~~i~W~~~--~~~~~-------- 182 (516)
..+..+.+.+|+++.|.|.+. +.+ .+.+.|++. +..+.
T Consensus 10 q~p~~v~v~~G~~v~L~C~~~--------------------------~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~ 63 (264)
T 2gjj_A 10 QTPSSLPVSVGEKVTMTCKSS--------------------------QTLLYSNNQKNYLAWYQQKPGQSPKLLISWAFT 63 (264)
T ss_dssp EECSEEEEETTCCEEEEEEES--------------------------SCCEETTTTEECEEEEEECTTSCCEEEEETTTE
T ss_pred ecCCeEEecCCCcEEEEeEcC--------------------------CcccccccCCceEEEEEECCCCCcEEEEEeccc
Confidence 456678899999999999998 666 678889874 22110
Q ss_pred ----cCCceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCceE---EEEEeece---------------------ee-
Q psy7039 183 ----IGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTAT---ASAHVTGT---------------------EF- 233 (516)
Q Consensus 183 ----~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~---~~~~~~~~---------------------~~- 233 (516)
...|+.+...+...+|.|.+++.+|+|.|.|.+.+..+... ..+.+... .+
T Consensus 64 ~~~~~~~R~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (264)
T 2gjj_A 64 RKSGVPDRFTGSGSGTDFTLTIGSVKAEDLAVYYCQQYSNYPWTFGGGTRLEIKRGGGGSGGGGSGGGGSGGGGSEVQLQ 143 (264)
T ss_dssp ECTTSCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEECC-------------------CCEEE
T ss_pred CCCCCCccEEEecCCCEEEEEECCCCHHHCEEEEEEEecCCccEecCCEEEEEEcCCcccccccccccccccccCcEEEe
Confidence 13567666555677999999999999999999988643211 12222111 11
Q ss_pred --eeccccCCceEEEEEEEEccCCCC--Cceecccccc-cc-----------------------eEEEEE--ecceeeEE
Q psy7039 234 --TDNNVHEGKAYEYRVSAVNAAGTE--KPKISLDALI-GK-----------------------RIKEFV--TSTTASLN 283 (516)
Q Consensus 234 --~~~~l~~g~~~~~~~~~~~~~g~p--~p~i~W~~~~-~~-----------------------~~~~~~--~~~~~~l~ 283 (516)
....+.+|+.+.|.|.+ .+.+ .+.+.|.+.. +. ++.+.. ......|.
T Consensus 144 ~~~~~~v~~G~~v~L~C~~---~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~ 220 (264)
T 2gjj_A 144 QSGPEVVKTGASVKISCKA---SGYSFTGYFINWVKKNSGKSPEWIGHISSSYATSTYNQKFKNKAAFTVDTSSSTAFMQ 220 (264)
T ss_dssp ECCCEEECTTCCEEEEEEE---ESSCGGGSEEEEEEECTTSCCEEEEEEETTTCCEEECGGGTTTEEEEEETTTTEEEEE
T ss_pred CCCCEEEcCCCcEEEEEEE---eCCccCCeEEEEEEECCCCCcEEEEEEeccCcccccCcccCCceEEEEcCCCCEEEEE
Confidence 11247789999999998 4554 3789996531 11 111111 12356899
Q ss_pred EccCCCCCceEEEEEEEec
Q psy7039 284 IKNSVRKDSGIYKIEAKND 302 (516)
Q Consensus 284 i~~l~~~d~g~y~c~a~n~ 302 (516)
|.+++.+|+|.|+|.+.|.
T Consensus 221 I~~v~~~DsG~Y~C~a~n~ 239 (264)
T 2gjj_A 221 LNSLTSEDSADYYCVRSGN 239 (264)
T ss_dssp ECSCCGGGCEEEEEEEECS
T ss_pred ECcCCcccCEEEEEEEecC
Confidence 9999999999999999985
|
| >1q9r_B S25-2 FAB (IGG1K) heavy chain; antigen-binding fragment, anti-carbohydrate, anti-LPS, antibody, immunoglobulin, KDO, complex, immune system; HET: KDA KDO; 1.45A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q9l_B 1q9k_B* 1q9q_B* 1q9v_B* 2r1w_B* 2r1x_B* 2r1y_B* 2r2b_B* 2r2e_B* 2r2h_B* 3bpc_B* 3sy0_B* 3t4y_B* 3t65_B* 2r23_B* 1q9t_B* 3t77_B* 3okl_B* 3okk_B* 3okm_B ... | Back alignment and structure |
|---|
Probab=99.39 E-value=2.8e-12 Score=116.97 Aligned_cols=170 Identities=15% Similarity=0.105 Sum_probs=108.8
Q ss_pred ccccCCceEEEEEEEEccCCCC--Cceecccccc-c-------------------------ceEEEEEe--cceeeEEEc
Q psy7039 236 NNVHEGKAYEYRVSAVNAAGTE--KPKISLDALI-G-------------------------KRIKEFVT--STTASLNIK 285 (516)
Q Consensus 236 ~~l~~g~~~~~~~~~~~~~g~p--~p~i~W~~~~-~-------------------------~~~~~~~~--~~~~~l~i~ 285 (516)
..+.+|..+.|.|.+ .|.+ .+.+.|.+.. + .++.+... .....|.|.
T Consensus 10 ~~v~~G~~v~L~C~~---~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~ 86 (222)
T 1q9r_B 10 GLVQSGGSLRLSCAT---SGFTFTDYYMSWVRQPPGKALEWLGFIRNKANGYTTEYSPSVKGRFTISRDNSQSILYLQMN 86 (222)
T ss_dssp CEECTTCCEEEEEEE---ESSCGGGSCEEEEEECTTSCCEEEEEECCGGGTTCEEECTTTBTTEEEEEETTTTEEEEEEC
T ss_pred eeEcCCCEEEEEEEe---cCccCCCCcEEEEEECCCCCcEEEEEEccCCcccccccCcccCCceEEEEECCCCeEEEEEC
Confidence 456789999999998 4443 6788996421 1 12222221 235689999
Q ss_pred cCCCCCceEEEEEEEecCC-----CcceeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeecccccccc
Q psy7039 286 NSVRKDSGIYKIEAKNDYG-----IDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDL 360 (516)
Q Consensus 286 ~l~~~d~g~y~c~a~n~~g-----~~~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~ 360 (516)
+++.+|+|.|.|.+.|..+ .......|.|...+.. .|.... .
T Consensus 87 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~--~P~i~~-----------~-------------------- 133 (222)
T 1q9r_B 87 TLRAEDSATYYCARDHDGYYERFSYWGQGTLVTVSAAKTT--PPSVYP-----------L-------------------- 133 (222)
T ss_dssp SCCGGGCEEEEEEECCCSSCCSCCCBCCCEEEEECSSCCB--CCEEEE-----------E--------------------
T ss_pred cCCcccCeEEEEEEeccCCcccceEeCCceEEEeccCCCC--CCeEEE-----------c--------------------
Confidence 9999999999999998764 2223456666543211 110000 0
Q ss_pred ccccEEEEcCCeEEEEEEEeee-cCC-ceEEEECCeecCCCCceEEEEcC---CeEEEEEcCceecCCceEEEEEEEcCC
Q psy7039 361 SIRDMTVLAGEEFTITVPFSGR-PKP-TPIWTVNGDEVSPDGRIKFETSE---NQTIYRNKSAKRATDSGSYTIQLVNTV 435 (516)
Q Consensus 361 ~~~~~~v~~g~~~~l~C~~~g~-p~~-~i~W~~~~~~l~~~~~~~~~~~~---~~~~l~i~~~~~~~~~g~y~c~a~n~~ 435 (516)
.....+..|+.+.|.|.+.|. |.| .+.|++++..+...........+ ..+.|.|..+.. .| |.|+|.|.|..
T Consensus 134 -~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~-~d-g~y~C~a~n~~ 210 (222)
T 1q9r_B 134 -APGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTW-PS-ETVTCNVAHPA 210 (222)
T ss_dssp -CCCSCCCCSSEEEEEEEEEEEBSSCCEEEEGGGTBCTTEEEEEEEEETTEEEEEEEEEEETTTT-TT-SCCEEEEEEGG
T ss_pred -cccccccCCCcEEEEEEEccEECCCCEEEEecCCeEcceEeccccccCCcEEEEEEEEECchhc-CC-CeEEEEEEccC
Confidence 001123578999999999986 888 99999998765321110111111 124689988888 88 99999999999
Q ss_pred CceeEEEEE
Q psy7039 436 GSDSASCKV 444 (516)
Q Consensus 436 G~~s~s~~l 444 (516)
|.......+
T Consensus 211 ~~~~~~~~i 219 (222)
T 1q9r_B 211 SSTKVDKKI 219 (222)
T ss_dssp GTEEEEEEC
T ss_pred CCCcEEEec
Confidence 986655444
|
| >2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A | Back alignment and structure |
|---|
Probab=99.38 E-value=1.7e-12 Score=117.62 Aligned_cols=163 Identities=14% Similarity=0.111 Sum_probs=106.2
Q ss_pred cccCCceEEEEEEEEccC----CCCCceeccccccc----------------------ceEEEEE--ecceeeEEEccCC
Q psy7039 237 NVHEGKAYEYRVSAVNAA----GTEKPKISLDALIG----------------------KRIKEFV--TSTTASLNIKNSV 288 (516)
Q Consensus 237 ~l~~g~~~~~~~~~~~~~----g~p~p~i~W~~~~~----------------------~~~~~~~--~~~~~~l~i~~l~ 288 (516)
.+.+|+.+.|.|.+.... +.+.+.+.|.+... .++.+.. ......|.|.+++
T Consensus 11 ~v~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~ 90 (214)
T 2zg1_A 11 TVQEGLCVLVPCSFSYPWRSWYSSPPLYVYWFRDGEIPYYAEVVATNNPDRRVKPETQGRFRLLGDVQKKNCSLSIGDAR 90 (214)
T ss_dssp EEETTCCEEECCEEECCCCCCSCCCCEEEEEEETTCCGGGCCBSEESCTTSCBCTTTTTTEEECSCGGGTBCCEEECSCC
T ss_pred EEecCccEEEeeeeecCCcccCCCCceEEEEEecCCCCcccceEecCCcccccCccccCceEEeccCCCCeEEEEEccCC
Confidence 456799999999874221 23577899965211 1222211 1234589999999
Q ss_pred CCCceEEEEEEEecCCCc----ceeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeecccccccccccc
Q psy7039 289 RKDSGIYKIEAKNDYGID----MADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRD 364 (516)
Q Consensus 289 ~~d~g~y~c~a~n~~g~~----~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~ 364 (516)
.+|+|.|.|.+.+..+.. ...+.|.|...+..|.. . .+.
T Consensus 91 ~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~p~i--~----------------------------------~~~- 133 (214)
T 2zg1_A 91 MEDTGSYFFRVERGRDVKYSYQQNKLNLEVTALIEKPDI--H----------------------------------FLE- 133 (214)
T ss_dssp GGGCEEEEEEEEETTTEEEECCSSCEEEEEECCCCCCEE--C------------------------------------C-
T ss_pred HhhCceEEEEEEcCCCceeeecCCceEEEEecCCCCCce--e----------------------------------cCc-
Confidence 999999999999875321 24677777765543311 0 001
Q ss_pred EEEEcCCeEEEEEEEeee----cCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeE
Q psy7039 365 MTVLAGEEFTITVPFSGR----PKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSA 440 (516)
Q Consensus 365 ~~v~~g~~~~l~C~~~g~----p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~ 440 (516)
.+.+|+.+.|.|.+.+. |.|.+.|++++...... .. .....|.|..+.. +|.|.|+|.|.|..+..+.
T Consensus 134 -~~~~G~~v~L~C~~~~~~~~~p~p~v~W~~~~~~~~~~-~~-----~~~~~L~i~~~~~-~~~g~Y~C~a~n~~~~~~~ 205 (214)
T 2zg1_A 134 -PLESGRPTRLSCSLPGSCEAGPPLTFSWTGNALSPLDP-ET-----TRSSELTLTPRPE-DHGTNLTCQMKRQGAQVTT 205 (214)
T ss_dssp -CCCTTCCEEEEEECTTCCSCSSCCEEEEESSTTSSSCS-SC-----CCSSEEEECCCTT-CCSCEEEEEEECC----CC
T ss_pred -cccCCCeEEEEEEeccCCCCCCCceEEEeCCCCccCCC-Cc-----eeEEEEEEecccH-HcCcEEEEEEEeCCCCcce
Confidence 14589999999999764 78899999998654221 11 2335799999988 9999999999998765444
Q ss_pred EEEE
Q psy7039 441 SCKV 444 (516)
Q Consensus 441 s~~l 444 (516)
+..+
T Consensus 206 ~~~v 209 (214)
T 2zg1_A 206 ERTV 209 (214)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 3333
|
| >1c1e_H Catalytic antibody 1E9 (heavy chain); diels-alder, immunoglobulin, immune system; HET: ENH; 1.90A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1dbb_H* 1dba_H* 1dbj_H* 1dbk_H* 1dbm_H* 2dbl_H* 3ojd_B 1jgl_H* 1jhk_H 1ghf_H 1tet_H* 3e8u_H 1fj1_B 1cl7_H | Back alignment and structure |
|---|
Probab=99.38 E-value=6.6e-12 Score=114.22 Aligned_cols=160 Identities=13% Similarity=0.116 Sum_probs=102.4
Q ss_pred cccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcC--ceeeEEeeC--Ceeec-------------
Q psy7039 120 TLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEP--FLNHGWSIN--GQVCQ------------- 182 (516)
Q Consensus 120 ~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p--~~~i~W~~~--~~~~~------------- 182 (516)
.+..+.+.+|+.+.|.|.+. +.+ .+.+.|+++ +..+.
T Consensus 6 ~p~~~~v~~G~~v~L~C~~~--------------------------~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~ 59 (219)
T 1c1e_H 6 QSGPELKKPGETVKISCKAS--------------------------GYMFTNYGMNWVKQAPGKALKLMGWINPYTGEST 59 (219)
T ss_dssp ECCCEEECTTCCEEEEEEEE--------------------------SSCGGGSEEEEEEECTTSCEEEEEEECSSSCCEE
T ss_pred CCCCeEecCCCcEEEEEEEe--------------------------CcccccceEEEEEeCCCCCcEEEEEEecCCCceE
Confidence 34557889999999999998 654 577888875 32221
Q ss_pred ----cCCceEEeec--CCeeEEEeccCCCCCCeeEEEEEEcCCCce------EEEEEeec-----eeee----eccccCC
Q psy7039 183 ----IGGRADVQTT--KSETVLDIPFCSRSDTGHYSLTLENNLGTA------TASAHVTG-----TEFT----DNNVHEG 241 (516)
Q Consensus 183 ----~~~~~~~~~~--~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~------~~~~~~~~-----~~~~----~~~l~~g 241 (516)
...|+.+... ....+|.|.+++.+|+|.|.|.+.+..+.. ...+.+.. ..+. ...+..|
T Consensus 60 ~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g 139 (219)
T 1c1e_H 60 FADDFKGRFAFFLETSATTAYLQINNLKNEDMATYFCARGTTIVRAMDYWGQGTSLTVSSAKTTPPSVYPLAPGSAAQTN 139 (219)
T ss_dssp ECGGGCSSEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEETTTTEEEEECCCEEEEECCCCCBCCEEEEECCCSSSCCS
T ss_pred eCcccCCcEEEEEecCCCEEEEEECCCCcccCEEEEEEEeccCcccceeecCceEEEEecCCCCCCeEEEecCccccccC
Confidence 1245555432 346799999999999999999999875311 11222221 1111 1235679
Q ss_pred ceEEEEEEEEccCC-CCCc-eecccccccc--eEEE--EEec----ceeeEEEccCCCCCceEEEEEEEecCCCccee
Q psy7039 242 KAYEYRVSAVNAAG-TEKP-KISLDALIGK--RIKE--FVTS----TTASLNIKNSVRKDSGIYKIEAKNDYGIDMAD 309 (516)
Q Consensus 242 ~~~~~~~~~~~~~g-~p~p-~i~W~~~~~~--~~~~--~~~~----~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~~ 309 (516)
..+.|.|.+ .| .|.| .+.|.+.... .... .... ....|.|... ..|.|.|+|.|.|..+.....
T Consensus 140 ~~v~L~C~~---~g~~P~p~~v~W~~~g~~~~~~~~~~~~~~~~~~~~s~L~i~~~-~~d~g~Y~C~a~n~~~~~~~~ 213 (219)
T 1c1e_H 140 SMVTLGCLV---KGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSS-PRPSETVTCNVAHPASSTKVD 213 (219)
T ss_dssp SEEEEEEEE---EEEBSSCCEEEEGGGTBCTTEEECCCEESSSCEEEEEEEEEESS-STTTSCCEEEEEEGGGTEEEE
T ss_pred CeEEEEEEc---ccccCCCeEEEEEeCCcccceEecCCcccCCeEEEEEEEEEecc-cCCCCEEEEEEEeCCCCccEE
Confidence 999999998 55 7888 9999763221 0000 0011 1236788444 446699999999988765433
|
| >2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A | Back alignment and structure |
|---|
Probab=99.38 E-value=6.8e-12 Score=113.51 Aligned_cols=125 Identities=20% Similarity=0.268 Sum_probs=93.6
Q ss_pred CcEEEeCCCcC-CCeEEEEEEEecCCCCCCCCCCCcceEeccC--CCCCccccCcccceEEecCCeEEEEEeeeeccccc
Q psy7039 69 ETSCTVPGLIE-GETYQFQVRAVNAAGPGEASKPTAPIVAKPK--NLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYT 145 (516)
Q Consensus 69 ~~~~~i~~l~~-~~~y~~~~~a~n~~g~~~~s~~~~~~~~~~~--~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~ 145 (516)
...|.|.+++. .|.|.|+|.|.|..|........+.+..... ...|.+. ..+....+.+|+.+.|.|.+.
T Consensus 63 ~~~L~i~~v~~~~d~G~Y~C~~~n~~g~~~~~~~~l~V~~~~~~~~~~p~~~-~~~~~~~~~~g~~v~l~C~~~------ 135 (212)
T 2yd1_A 63 ISILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVIT-QGPGTRVIEVGHTVLMTCKAI------ 135 (212)
T ss_dssp EEEEEESSCCTTTTCSEEEEEEECSSSCEEEEEEEEEEECTTCSCTTCCEEE-ECCCCEEEETTCCEEECCEEE------
T ss_pred eEEEEEEecCCCCcCceEEEEEEeCCCCeEEeeEEEEEecccCCCCCCCeeE-eCCCceEeecCCeEEEEEEec------
Confidence 36899999999 9999999999998765221112222222111 1225555 455667889999999999999
Q ss_pred cCccccccccccCccceeecCcCceeeEEeeCCeeeccC-CceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCceEE
Q psy7039 146 KSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIG-GRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATA 224 (516)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~ 224 (516)
+.|.+.+.|++++..+... .++.+. ...|.|.+++.+|+|.|+|.+.|..|....
T Consensus 136 --------------------g~p~p~i~W~~~~~~~~~~~~~~~~~----~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~s 191 (212)
T 2yd1_A 136 --------------------GNPTPNIYWIKNQTKVDMSNPRYSLK----DGFLQIENSREEDQGKYECVAENSMGTEHS 191 (212)
T ss_dssp --------------------CSSCCEEEEEETTEECCTTSTTEEEE----TTEEEECSCCGGGCEEEEEEEEETTEEEEC
T ss_pred --------------------cCCCCeEEEEECCeEcccCCCeEEcc----CCeEEEccCChhhCEEEEEEeecCCCceeE
Confidence 9999999999999988753 344332 238999999999999999999999887653
|
| >4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A | Back alignment and structure |
|---|
Probab=99.38 E-value=5.3e-12 Score=115.51 Aligned_cols=183 Identities=12% Similarity=0.056 Sum_probs=119.3
Q ss_pred ccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccC------CceEEee---
Q psy7039 121 LNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIG------GRADVQT--- 191 (516)
Q Consensus 121 ~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~------~~~~~~~--- 191 (516)
.+.+.+.+|+++.|.|.+. +......+.+.|++ ..+...+.|+.++..+... .|.....
T Consensus 11 ~~pV~v~~G~~v~L~C~v~-----------~~~~~~~~~V~W~k-~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~ 78 (226)
T 4f80_A 11 SGPILAMVGEDADLPCHLF-----------PTMSAETMELKWVS-SSLRQVVNVYADGKEVEDRQSAPYRGRTSILRDGI 78 (226)
T ss_dssp SSCEEEETTSCEEEEEEEE-----------SCCCCTTSEEEEEE-TTTCCEEEEEETTEECGGGSCTTTTTTEEEECTTG
T ss_pred CCCEEEEcCCcEEEEEEEE-----------CCCCCCceEEEEEE-CCCCceEEEEeCCeEcccccCccccceEEEecccc
Confidence 3457889999999999987 11122334577776 4455566777777665432 2333222
Q ss_pred cCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEEeecee-----eeeccccCCceEEEEEEEEccCCCCCceeccccc
Q psy7039 192 TKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVTGTE-----FTDNNVHEGKAYEYRVSAVNAAGTEKPKISLDAL 266 (516)
Q Consensus 192 ~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~~~~~-----~~~~~l~~g~~~~~~~~~~~~~g~p~p~i~W~~~ 266 (516)
..+..+|.|.+++.+|+|.|+|.+.|..|.....+.+.... .....+.+|....+.|.+. .+.|.|.++|.+.
T Consensus 79 ~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~v~~~~~~~~~~~~~~~~~~~g~~v~l~c~~~--g~~P~p~i~W~k~ 156 (226)
T 4f80_A 79 TAGKAALRIHNVTASDSGKYLCYFQDGDFYEKALVELKVAALGSDLHVDVKGYKDGGIHLECRST--GWYPQPQIQWSNN 156 (226)
T ss_dssp GGTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEEBCCCCCEEEEEEEETTEEEEEEEEE--EEBSCCEEEEECT
T ss_pred cCCeEEEEEeeCchHHCeeEEEEEECCCcEEEEEEEEeeccceecccceeeeccCCceeeEEEec--cCCCCCEEEEEEC
Confidence 23467999999999999999999999888776665443322 1234556789999999882 3369999999653
Q ss_pred ccceE-----EEEEec--ceeeEEEccCCCCCceEEEEEEEecCCCcceeEEEEEecC
Q psy7039 267 IGKRI-----KEFVTS--TTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSK 317 (516)
Q Consensus 267 ~~~~~-----~~~~~~--~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~ 317 (516)
.+... ...... ....+.+..++.+|.|.|+|.|.|..|..+.++.|.|..+
T Consensus 157 ~~~~~~~~~~~~~~~~~g~~~v~s~l~v~~~d~G~YtC~a~N~~g~~~~~~~v~v~ep 214 (226)
T 4f80_A 157 KGENIPTVEAPVVADGVGLYAVAASVIMRGSSGEGVSCTIRSSLLGLEKTASISIADP 214 (226)
T ss_dssp TSCBCCCEECCCEECTTSCEEEEEEEEECC----CEEEEEEETTTTEEEEEEECCCTT
T ss_pred CceEcCCCceEEEECCCCcEEEEEEEEechhcCcEEEEEEEeCCCCeEEEEEEEECCC
Confidence 22111 111111 1123445567889999999999999999888888887553
|
| >4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=2.4e-12 Score=116.96 Aligned_cols=168 Identities=14% Similarity=0.104 Sum_probs=104.5
Q ss_pred cccCCceEEEEEEEEccCCCCCc---eecccccccceEEEEE----------------------------ecceeeEEEc
Q psy7039 237 NVHEGKAYEYRVSAVNAAGTEKP---KISLDALIGKRIKEFV----------------------------TSTTASLNIK 285 (516)
Q Consensus 237 ~l~~g~~~~~~~~~~~~~g~p~p---~i~W~~~~~~~~~~~~----------------------------~~~~~~l~i~ 285 (516)
....|+.+.|.|.+ .|.+.+ .+.|.+..+....... .....+|.|.
T Consensus 12 ~~~~G~~v~L~C~~---~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~ 88 (225)
T 4fmk_A 12 RGRLGGTVELPCHL---LPPTTERVSQVTWQRLDGTVVAAFHPSFGVDFPNSQFSKDRLSFVRARPETNADLRDATLAFR 88 (225)
T ss_dssp EEETTSCEEECCEE---CSSCCCEEEEEEEECTTSCEEEEEETTTEEECCCTTSCTTTEEECCCSCSCCSSCCBCCEEEC
T ss_pred EEecCCCEEEEEEE---ECCCCCceeEEEEEECCCcceEEEecccceeeccccccccceeeeccccccccccCcEEEEEc
Confidence 34579999999998 565555 4789764332221110 2235679999
Q ss_pred cCCCCCceEEEEEEEecCCCccee-EEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeecccccccccccc
Q psy7039 286 NSVRKDSGIYKIEAKNDYGIDMAD-IEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRD 364 (516)
Q Consensus 286 ~l~~~d~g~y~c~a~n~~g~~~~~-~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~ 364 (516)
+++.+|+|.|+|.|.|..+..... ..+.+...|.... ....
T Consensus 89 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------~~~~ 130 (225)
T 4fmk_A 89 GLRVEDEGNYTCEFATFPNGTRRGVTWLRVIAQPENHA--------------------------------------EAQE 130 (225)
T ss_dssp SCCGGGCEEEEEEEEEETTEEEEEEEEEEEEBCCEEEE--------------------------------------EECC
T ss_pred cCCHHHCcceEEEEEeCCCcceeeeeeeeeecCCceee--------------------------------------cccc
Confidence 999999999999999987665433 3333333322110 0111
Q ss_pred EEEEcCCeEEEEEEE-eeecCCceEEEECCeecCCCCceEEEEcCC---eEEEEEcCceecCCceEEEEEEEcCCCceeE
Q psy7039 365 MTVLAGEEFTITVPF-SGRPKPTPIWTVNGDEVSPDGRIKFETSEN---QTIYRNKSAKRATDSGSYTIQLVNTVGSDSA 440 (516)
Q Consensus 365 ~~v~~g~~~~l~C~~-~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~---~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~ 440 (516)
.....+..+.+.|.+ .+.|++.+.|.+++..+...........+. .+.|.|..+.. +|.|.|+|.|.|..|....
T Consensus 131 ~~~~~~~~~~~~c~~~~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~-~d~g~YtC~a~N~~~~~~~ 209 (225)
T 4fmk_A 131 VTIGPQSVAVARCVSTGGRPPARITWISSLGGEAKDTQEPGIQAGTVTIISRYSLVPVGR-ADGVKVTCRVEHESFEEPI 209 (225)
T ss_dssp BCCSSSCEEEEEEEEEEEBSCCEEEEECSSCCEEEEEEEECSSTTCEEEEEEEEECCCGG-GTTCEEEEEEECTTCSSCE
T ss_pred eeecceeeeeeeeeecCCCCCCEEEEEECCccccCCcceEEecCCCEEEEEEEEEeeCCH-HHCCEEEEEEEcCCCCeEE
Confidence 223345566666655 567778999998875432211111111111 24699999999 9999999999999988655
Q ss_pred EEEEEE
Q psy7039 441 SCKVYV 446 (516)
Q Consensus 441 s~~l~v 446 (516)
+..+++
T Consensus 210 ~~~v~l 215 (225)
T 4fmk_A 210 LLPVTL 215 (225)
T ss_dssp EEEEEC
T ss_pred EEEEEE
Confidence 544443
|
| >2yux_A Myosin-binding protein C, SLOW-type; fibronectin III domain, structural genomics., NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.37 E-value=2.7e-12 Score=104.82 Aligned_cols=96 Identities=33% Similarity=0.558 Sum_probs=81.9
Q ss_pred CCCCCCCCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCC-CeEEeEEeecCCcEEEeCCCcCCCeEEEEE
Q psy7039 9 NPFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTG-NWEKAVVVPAGETSCTVPGLIEGETYQFQV 87 (516)
Q Consensus 9 ~~~~~p~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~-~~~~~~~~~~~~~~~~i~~l~~~~~y~~~~ 87 (516)
...++|++|.++++..++.+++.|+|.+|..+++++|.+|.|+++..+. .|..+.. ....++++|.+|.++..|.|+|
T Consensus 13 ~~~~~P~~P~~l~~~~~~~~sv~l~W~~p~~~gg~~i~~Y~v~~~~~~~~~w~~~~~-~~~~~~~~v~~L~p~t~Y~frV 91 (120)
T 2yux_A 13 QIIDRPGPPQIVKIEDVWGENVALTWTPPKDDGNAAITGYTIQKADKKSMEWFTVIE-HYHRTSATITELVIGNEYYFRV 91 (120)
T ss_dssp CCCCCCCCCSCEEEEEEETTEEEEEECCCSCCCSSCCCCCCEEEEETTTCCCEEEES-SCCSSCCEECCCCSSEEEEEEE
T ss_pred EeecCCCcCCCCEEEEecCCEEEEEEcCCCcCCCCCceEEEEEEEECCCCceEEeee-cCCcCEEEECCCCCCCEEEEEE
Confidence 3457999999999999999999999999977777899999999998665 8876643 3468889999999999999999
Q ss_pred EEecCCCCCCCCCCCcce
Q psy7039 88 RAVNAAGPGEASKPTAPI 105 (516)
Q Consensus 88 ~a~n~~g~~~~s~~~~~~ 105 (516)
+|.|..|.+.++..+..+
T Consensus 92 ~A~n~~G~s~~S~~s~~~ 109 (120)
T 2yux_A 92 FSENMCGLSEDATMTKES 109 (120)
T ss_dssp CCCSSSCSCSSCEECSSC
T ss_pred EEeeCCcCCCCccCcCCc
Confidence 999999999887654333
|
| >1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein, immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 1p9m_C 2arw_A | Back alignment and structure |
|---|
Probab=99.37 E-value=1.2e-10 Score=112.77 Aligned_cols=238 Identities=12% Similarity=0.089 Sum_probs=135.2
Q ss_pred cccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcC-ceeeEEeeCCeeeccCCceEEeecCCeeEE
Q psy7039 120 TLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEP-FLNHGWSINGQVCQIGGRADVQTTKSETVL 198 (516)
Q Consensus 120 ~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l 198 (516)
+...+.+..|+.++|.|.+. +.+ .+.|.|++++..+... ..... .....|
T Consensus 12 p~~~v~~~~G~~v~l~C~~~--------------------------~~~~~~~i~W~~~~~~~~~~-~~~~~--~~~~~L 62 (325)
T 1n26_A 12 ARGVLTSLPGDSVTLTCPGV--------------------------EPEDNATVHWVLRKPAAGSH-PSRWA--GMGRRL 62 (325)
T ss_dssp CTTEEEECTTCCEEEECTTS--------------------------CTTCCSEEEEEEECSSSSCC-CEEEE--EESSEE
T ss_pred CCCcEECCCCCcEEEEeCCC--------------------------CCCCCceEEEEECCccCCcc-ccccc--cccceE
Confidence 34445557999999999988 654 7899999987655211 11222 223689
Q ss_pred EeccCCCCCCeeEEEEEEcCCCceEEEEEeeceeeeeccccCCceEEEEEEEEccCCCCCceecccc-------------
Q psy7039 199 DIPFCSRSDTGHYSLTLENNLGTATASAHVTGTEFTDNNVHEGKAYEYRVSAVNAAGTEKPKISLDA------------- 265 (516)
Q Consensus 199 ~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~g~p~p~i~W~~------------- 265 (516)
.|.+++..|+|.|+|.. .|.......+.+.. .++... +.|.+. .......+.|..
T Consensus 63 ~i~~v~~~d~G~Y~C~~---~g~~~~~~~L~V~~------pP~~P~-l~c~~~--~~~~~~~c~W~~~~~~~~~~~y~l~ 130 (325)
T 1n26_A 63 LLRSVQLHDSGNYSCYR---AGRPAGTVHLLVDV------PPEEPQ-LSCFRK--SPLSNVVCEWGPRSTPSLTTKAVLL 130 (325)
T ss_dssp EECSCCGGGCEEEEEES---SSSCSCEEEEEECC------CCCCCC-CEEEBS--STTSCEEEEECCSSCCCTTCEEEEE
T ss_pred EecccchhhCeEeEEEe---CCEEeeeEEEEecc------CCCCCc-eeEEee--cCCCcEEEEECCCCCCCCCceEEEE
Confidence 99999999999999993 45444333332221 122222 333320 001122333321
Q ss_pred ---cc---cceEEEEE----ecceeeEEEccCC-CCCceEEEEEEEecCCCcce-eEEEEE--ecCCCCCCCCceeeecc
Q psy7039 266 ---LI---GKRIKEFV----TSTTASLNIKNSV-RKDSGIYKIEAKNDYGIDMA-DIEVVV--VSKPGPPTGPIDYTTVT 331 (516)
Q Consensus 266 ---~~---~~~~~~~~----~~~~~~l~i~~l~-~~d~g~y~c~a~n~~g~~~~-~~~l~v--~~~p~~p~~p~~~~~~~ 331 (516)
.. ........ ......+.|..+. ....|.|+|.|.|..|.... ...+.. ...|.+|.. +.+..+.
T Consensus 131 ~~~~~~~~~~~~~~~c~~~~~~~~~~c~i~~~~~~~~~Y~f~v~A~N~~G~~~s~~~~~~~~~~v~P~pP~~-l~v~~~~ 209 (325)
T 1n26_A 131 VRKFQNSPAEDFQEPCQYSQESQKFSCQLAVPEGDSSFYIVSMCVASSVGSKFSKTQTFQGCGILQPDPPAN-ITVTAVA 209 (325)
T ss_dssp EEEESSSSCEEEEEEEEEETTTTEEEEEECCCTTCCCEEEEEEEEEETTEEEECCCEEEETTTCBCCCCCEE-EEEEECT
T ss_pred EEEccCCCCCcccccCCCCCCCCCEEEEECCCcccCcEEEEEEEEEcCCCCcccCcEEEeeccccCCCCCcc-eEEEEec
Confidence 00 00000011 1234566777765 56889999999999987532 222222 123333322 5666654
Q ss_pred --CCeeEEEecCCCCC-CCCceeeccccccccccccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceE-EEEc
Q psy7039 332 --PESVSMSWKPPVDD-GGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIK-FETS 407 (516)
Q Consensus 332 --~~~~~l~W~~p~~~-~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~-~~~~ 407 (516)
..++.|+|++|... .+..+.+|. |.|...+. .... ....
T Consensus 210 ~~~~sv~lsW~~p~~~~~~~~~~~Y~--------------------------------V~yr~~~~-----~~W~~~~~~ 252 (325)
T 1n26_A 210 RNPRWLSVTWQDPHSWNSSFYRLRFE--------------------------------LRYRAERS-----KTFTTWMVK 252 (325)
T ss_dssp TCTTCEEEEEECCTTCCCSSSCEEEE--------------------------------EEEEETTC-----SCCEEEECG
T ss_pred CCCCEEEEEECCCCccCCCcEeEEEE--------------------------------EEEEeCCC-----CCCEEEccc
Confidence 36999999998763 344455552 12222110 0111 1111
Q ss_pred CCeEEEEEcCceecCCceEEEEEEEcCCCc
Q psy7039 408 ENQTIYRNKSAKRATDSGSYTIQLVNTVGS 437 (516)
Q Consensus 408 ~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~ 437 (516)
.....+.|.+|.+ ...|.++++|.|..|.
T Consensus 253 ~~~~~~~l~~L~p-~t~Y~~rVrA~n~~g~ 281 (325)
T 1n26_A 253 DLQHHCVIHDAWS-GLRHVVQLRAQEEFGQ 281 (325)
T ss_dssp GGCSEEEESSCCT-TCCEEEEEEEEETTTB
T ss_pred CCceEEEEeCCCC-CCeEEEEEEEecCCCC
Confidence 2234688999999 9999999999998775
|
| >3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.37 E-value=5.8e-12 Score=117.72 Aligned_cols=176 Identities=15% Similarity=0.149 Sum_probs=113.5
Q ss_pred ccccCCceEEEEEEEEccCCCCCceecccccc-c-------------------ceEEE--EEecceeeEEEccCCCCCce
Q psy7039 236 NNVHEGKAYEYRVSAVNAAGTEKPKISLDALI-G-------------------KRIKE--FVTSTTASLNIKNSVRKDSG 293 (516)
Q Consensus 236 ~~l~~g~~~~~~~~~~~~~g~p~p~i~W~~~~-~-------------------~~~~~--~~~~~~~~l~i~~l~~~d~g 293 (516)
..+.+|+.+.|.|.+ .+.+.+.+.|.+.. + .++.+ ........|.|.+++.+|+|
T Consensus 13 ~~v~~G~~v~L~C~~---~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~DsG 89 (256)
T 3tf7_C 13 VTVSEGASLQLRCKY---SYSATPYLFWYVQYPRQGPQMLLKYYSGDPVVQGVNGFEAEFSKSDSSFHLRKASVHRSDSA 89 (256)
T ss_dssp EEEETTSCEEECCEE---ECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECSTTCEEEEETTTTEEEEEESSCCGGGCS
T ss_pred EEecCCCeEEEEEEe---CCCCCceEEEEEECCCCCeEEEEEEccCCcccccCCCeEEEEcCCCCEEEEEECCCCcccCE
Confidence 356789999999998 56688999996521 1 11111 11244668999999999999
Q ss_pred EEEEEEEecCCCc----ceeEEEEEecCC--------------CCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccc
Q psy7039 294 IYKIEAKNDYGID----MADIEVVVVSKP--------------GPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPK 355 (516)
Q Consensus 294 ~y~c~a~n~~g~~----~~~~~l~v~~~p--------------~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~ 355 (516)
.|+|.+.|..+.. .....|.|.... ..+.. ..+.
T Consensus 90 ~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~-~~v~--------------------------- 141 (256)
T 3tf7_C 90 VYFCAVSAKGTGSKLSFGKGAKLTVSPGGGGSGGGGSGGGGSGGGGSE-AAVT--------------------------- 141 (256)
T ss_dssp EEEEEEECTTCTTCEEECCCEEEEEEC----------------------CCEE---------------------------
T ss_pred EEEEEEecCCCccceEECCCeEEEEeCCCCCcCCCCcCcccCCCCcCc-cEEE---------------------------
Confidence 9999999876532 223456665410 00000 0000
Q ss_pred cccccccccEEEEcCCeEEEEEEEeeecCCceEEEECCee--c---------------CCCCceEEEE-cCCeEEEEEcC
Q psy7039 356 ITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDE--V---------------SPDGRIKFET-SENQTIYRNKS 417 (516)
Q Consensus 356 ~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~--l---------------~~~~~~~~~~-~~~~~~l~i~~ 417 (516)
..+....+.+|+.++|.|.+.+. .+.+.|++.... . ....++.... ......|.|.+
T Consensus 142 ----~~p~~~~v~~G~~v~L~C~~~~~-~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~ 216 (256)
T 3tf7_C 142 ----QSPRNKVTVTGENVTLSCRQTNS-HNYMYWYRQDTGHELRLIYYSYGAGNLQIGDVPDGYKATRTTQEDFFLTLES 216 (256)
T ss_dssp ----ESCSEEEEETTCCEEECEEECSC-CSEEEEEEECTTSCEEEEEEEESTTCCEECSCCTTCEEECCSSSBCEEEESS
T ss_pred ----ecCCEEEEeCCCcEEEEEEcCCC-ceEEEEEEECCCCCeEEEEEEcCCCceecCccCCceEEEeCCCCeEEEEECC
Confidence 12345677899999999999877 678999984311 0 0123344332 23445799999
Q ss_pred ceecCCceEEEEEEEcCCCce--eEEEEEEEec
Q psy7039 418 AKRATDSGSYTIQLVNTVGSD--SASCKVYVVD 448 (516)
Q Consensus 418 ~~~~~~~g~y~c~a~n~~G~~--s~s~~l~v~~ 448 (516)
+.. .|+|.|+|.|.|..|.. ..-..|.|..
T Consensus 217 v~~-~DsG~Y~C~a~n~~g~~~fG~gt~l~v~~ 248 (256)
T 3tf7_C 217 ASP-SQTSLYFCASSDAPGQLYFGEGSKLTVLE 248 (256)
T ss_dssp CCG-GGCEEEEEEEEEETTEEEECCCEEEEEEC
T ss_pred CCH-HHCEEEEEEecCCCCccEECCCeEEEEEc
Confidence 999 99999999999987752 2224566654
|
| >1x5x_A Fibronectin type-III domain containing protein 3A; structural genomics, KIAA0970, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 | Back alignment and structure |
|---|
Probab=99.37 E-value=3.4e-12 Score=102.34 Aligned_cols=91 Identities=23% Similarity=0.364 Sum_probs=75.8
Q ss_pred CCCCCCCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCC--CeEEeEEeecCCcEEEeCCCcCCCeEEEEE
Q psy7039 10 PFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTG--NWEKAVVVPAGETSCTVPGLIEGETYQFQV 87 (516)
Q Consensus 10 ~~~~p~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~--~~~~~~~~~~~~~~~~i~~l~~~~~y~~~~ 87 (516)
...+|++|..+++..++.++|.|+|.+|..+++.+|.+|.|+|+..+. .|..... ...++++|.+|++++.|.|+|
T Consensus 4 ~~~~P~~P~~p~~~~~~~~sv~l~W~~p~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~--~~~~~~~v~~L~p~t~Y~frV 81 (109)
T 1x5x_A 4 GSSGPSMPASPVLTKAGITWLSLQWSKPSGTPSDEGISYILEMEEETSGYGFKPKYD--GEDLAYTVKNLRRSTKYKFKV 81 (109)
T ss_dssp CCCCCCCCCCCEEEEECSSEEEEECCCCSSCCSSSSCEEEEEECCSSSSCCCEEEEE--ESCSEEEEESCCSSCEEEEEE
T ss_pred CCCCCcCCCCCEEEEccCCEEEEEEcCCCCCCCCcccEEEEEEecCCCCcceEEeEe--CCccEEEECCCCCCCEEEEEE
Confidence 346788888888999999999999999976766689999999988654 5655443 357899999999999999999
Q ss_pred EEecCCCCCCCCCCC
Q psy7039 88 RAVNAAGPGEASKPT 102 (516)
Q Consensus 88 ~a~n~~g~~~~s~~~ 102 (516)
+|.|..|.+.++...
T Consensus 82 ~A~n~~G~s~~S~~~ 96 (109)
T 1x5x_A 82 IAYNSEGKSNPSEVV 96 (109)
T ss_dssp EEECSSCEEEECCCE
T ss_pred EEEeCCCCcCCccCE
Confidence 999999988776543
|
| >1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A | Back alignment and structure |
|---|
Probab=99.36 E-value=6.3e-12 Score=111.48 Aligned_cols=122 Identities=12% Similarity=0.064 Sum_probs=92.5
Q ss_pred cCCcEEEeCCCcCCCeEEEEEEEecCCCCCCCCCCCcceEeccCCCCCccccCcccceEEecCCeEEEEEeeeecccccc
Q psy7039 67 AGETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTK 146 (516)
Q Consensus 67 ~~~~~~~i~~l~~~~~y~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~ 146 (516)
.....|.|.+++..|.|.|+|.|.|..|... .....+.+. .+|.+. ..+....+.+|+.+.|.|.+.
T Consensus 59 ~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~--~~~~~l~v~---~~p~~~-~~~~~~~~~~g~~~~l~C~~~------- 125 (191)
T 1epf_A 59 DDSSTLTIYNANIDDAGIYKCVVTAEDGTQS--EATVNVKIF---QKLMFK-NAPTPQEFKEGEDAVIVCDVV------- 125 (191)
T ss_dssp TTEEEEEECSCCGGGCEEEEEEEEETTTEEE--EEEEEEEEE---CCSEEE-ECCSSEECCTTSCEEECCEEE-------
T ss_pred CCceEEEEccCCcccCEEEEEEEEcCCCcce--EEEEEEEee---cCceEe-cCCCcEeecCCCeEEEEEEEC-------
Confidence 3567899999999999999999999875221 112222222 355555 455667889999999999999
Q ss_pred CccccccccccCccceeecCcCceeeEEeeCCeeeccCC--ceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCceE
Q psy7039 147 SPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGG--RADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTAT 223 (516)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~--~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~ 223 (516)
+.|.+.+.|++++..+.... ++.... ...|.|.+++.+|+|.|+|.+.|..+...
T Consensus 126 -------------------g~p~~~v~W~~~~~~~~~~~~~~~~~~~---~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~ 182 (191)
T 1epf_A 126 -------------------SSLPPTIIWKHKGRDVILKKDVRFIVLS---NNYLQIRGIKKTDEGTYRCEGRILARGEI 182 (191)
T ss_dssp -------------------CSSCCEEEEEETTEEGGGGCCTTEEECT---TSCEEETTCCGGGCEEEEEEEEEGGGTEE
T ss_pred -------------------CCCCCEEEEEECCEEeeccCCceEEEec---CCeEEECCCChhhCEEEEEEEEEecceeE
Confidence 99999999999998886433 343332 23799999999999999999999876543
|
| >2ic2_A CG9211-PA, GH03927P; IHOG, hedgehog, fibronectin type III, protein binding; HET: MSE; 1.30A {Drosophila melanogaster} SCOP: b.1.2.1 | Back alignment and structure |
|---|
Probab=99.36 E-value=2.5e-12 Score=103.92 Aligned_cols=93 Identities=24% Similarity=0.388 Sum_probs=72.2
Q ss_pred CCCCCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeC-C-CCeEEeEEee-----------cCCcEEEeCCCc
Q psy7039 12 DEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDK-T-GNWEKAVVVP-----------AGETSCTVPGLI 78 (516)
Q Consensus 12 ~~p~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~-~-~~~~~~~~~~-----------~~~~~~~i~~l~ 78 (516)
.+|++|. +..+++++|.|+|.+|. ++|++|.+|.|+|++. . +.|..+.... ...++++|.+|.
T Consensus 4 ~pP~~P~---v~~~~~~sv~L~W~~P~-~~G~pI~~Y~Ve~r~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~v~~L~ 79 (115)
T 2ic2_A 4 YPPTPPN---VTRLSDESVMLRWMVPR-NDGLPIVIFKVQYRMVGKRKNWQTTNDNIPYGKPKWNSELGKSFTASVTDLK 79 (115)
T ss_dssp CCCCCCE---EEECC---EEEEEEEEC-CSSCCEEEEEEEEEECC---CCEEEEEEEECCSCSCSSSSEEEEEEEECSCC
T ss_pred CCCCcCE---eEEEeCCEEEEEEcCCC-CCCCCCceEEEEEEECCCCCCceECcccccccccccccccCceeEEEeCCCC
Confidence 4577775 77789999999999996 4458999999999987 3 3898776543 234689999999
Q ss_pred CCCeEEEEEEEecCCCCCCCCCCCcceEec
Q psy7039 79 EGETYQFQVRAVNAAGPGEASKPTAPIVAK 108 (516)
Q Consensus 79 ~~~~y~~~~~a~n~~g~~~~s~~~~~~~~~ 108 (516)
+++.|.|+|+|.|..|.+.++..+..+..+
T Consensus 80 p~t~Y~FRV~A~N~~G~~~pS~~S~~~~~~ 109 (115)
T 2ic2_A 80 PQHTYRFRILAVYSNNDNKESNTSAKFYLQ 109 (115)
T ss_dssp SSEEEEEEEEEEETTSCEEECCCCCCEEEC
T ss_pred CCCEEEEEEEEEeCCCCCCCCCCCCCEEeC
Confidence 999999999999999998888777666654
|
| >1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B | Back alignment and structure |
|---|
Probab=99.36 E-value=1.6e-12 Score=113.45 Aligned_cols=152 Identities=12% Similarity=0.022 Sum_probs=97.2
Q ss_pred cceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeecc------------CCceEE
Q psy7039 122 NDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQI------------GGRADV 189 (516)
Q Consensus 122 ~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~------------~~~~~~ 189 (516)
+.+.+.+|+++.|.|.+. + |.+.|.|++++..+.. ..|+.+
T Consensus 3 ~~v~~~~G~~VtL~c~~~--------------------------~-~~~~i~W~~~~~~i~~~~~~~~~~~~~~~~R~~~ 55 (171)
T 1ccz_A 3 QQIYGVVYGNVTFHVPSN--------------------------V-PLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYL 55 (171)
T ss_dssp EEEEEETTCCEEECCCCS--------------------------S-CCSCEEEEETTEEEEEEETTEEEECGGGTTSEEE
T ss_pred cEEEEEcCCCEEEcCCCC--------------------------C-CcceEEEEeCCcEEEEEcCCCcccccccCCcEEE
Confidence 347788999999999886 5 7788999887764321 012222
Q ss_pred eecCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEEeece-eeeeccccCCceEEEEEEEEccCCCCCceeccccccc
Q psy7039 190 QTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVTGT-EFTDNNVHEGKAYEYRVSAVNAAGTEKPKISLDALIG 268 (516)
Q Consensus 190 ~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~~~~-~~~~~~l~~g~~~~~~~~~~~~~g~p~p~i~W~~~~~ 268 (516)
...+.+|.|.+++.+|+|.|.|.+.+..|.....+.+... ......... ....+.|.+ .|.|.|.+.|.+..
T Consensus 56 --~~~~~sL~I~~v~~~DsG~Y~C~~~n~~~~~~~~L~V~~~~~~p~i~~~~-~~~~L~C~~---~~~p~p~i~W~~~~- 128 (171)
T 1ccz_A 56 --DTVSGSLTIYNLTSSDEDEYEMESPNITDTMKFFLYVLEMVSKPMIYWEC-SNATLTCEV---LEGTDVELKLYQGK- 128 (171)
T ss_dssp --CTTTCCEEECSCCGGGCEEEEEECTTCCSCEEEEEEEECCCCCCEEEEET-TTTEEEEEC---SSCSSCEEEEEETT-
T ss_pred --eCCCCeEEECCCChhhCceEEEEEeCCCCcEEEEEEEECcCCCCEEEEec-CCcEEEEEe---CCCCCcEEEEEECC-
Confidence 2345689999999999999999999887743333333221 000000111 112678887 77789999996522
Q ss_pred ceEEEEEecceeeEEEccCCCCCceEEEEEEEecCCCcceeEEE
Q psy7039 269 KRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEV 312 (516)
Q Consensus 269 ~~~~~~~~~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~~~~l 312 (516)
.... ......+.+. ..+|.|.|+|.|.|..+.....+.|
T Consensus 129 ~~l~---~~~~~~l~~~--~~~~~g~Y~C~a~N~~~~~~~~~~l 167 (171)
T 1ccz_A 129 EHLR---SLRQKTMSYQ--WTNLRAPFKCKAVNRVSQESEMEVV 167 (171)
T ss_dssp EEEE---EESSSEEEEE--CSCCSSCEEEEEEETTEEEEEEECC
T ss_pred EECc---CCcceEEEEe--ccCCCceEEEEEEcccCcccceeEE
Confidence 1111 1222344444 3678899999999999886655544
|
| >1c1e_H Catalytic antibody 1E9 (heavy chain); diels-alder, immunoglobulin, immune system; HET: ENH; 1.90A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1dbb_H* 1dba_H* 1dbj_H* 1dbk_H* 1dbm_H* 2dbl_H* 3ojd_B 1jgl_H* 1jhk_H 1ghf_H 1tet_H* 3e8u_H 1fj1_B 1cl7_H | Back alignment and structure |
|---|
Probab=99.36 E-value=3.6e-12 Score=115.94 Aligned_cols=170 Identities=18% Similarity=0.144 Sum_probs=105.6
Q ss_pred ccccCCceEEEEEEEEccCCCC--Cceecccccc-cc-----------------------eEEEEEe--cceeeEEEccC
Q psy7039 236 NNVHEGKAYEYRVSAVNAAGTE--KPKISLDALI-GK-----------------------RIKEFVT--STTASLNIKNS 287 (516)
Q Consensus 236 ~~l~~g~~~~~~~~~~~~~g~p--~p~i~W~~~~-~~-----------------------~~~~~~~--~~~~~l~i~~l 287 (516)
..+.+|+.+.|.|.+ .|.+ .+.+.|.+.. +. ++.+... .....|.|.++
T Consensus 10 ~~v~~G~~v~L~C~~---~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v 86 (219)
T 1c1e_H 10 ELKKPGETVKISCKA---SGYMFTNYGMNWVKQAPGKALKLMGWINPYTGESTFADDFKGRFAFFLETSATTAYLQINNL 86 (219)
T ss_dssp EEECTTCCEEEEEEE---ESSCGGGSEEEEEEECTTSCEEEEEEECSSSCCEEECGGGCSSEEEEEEGGGTEEEEEECSC
T ss_pred eEecCCCcEEEEEEE---eCcccccceEEEEEeCCCCCcEEEEEEecCCCceEeCcccCCcEEEEEecCCCEEEEEECCC
Confidence 356789999999998 5543 6889996531 11 1222111 23568999999
Q ss_pred CCCCceEEEEEEEecCCC----cceeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccccccc
Q psy7039 288 VRKDSGIYKIEAKNDYGI----DMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIR 363 (516)
Q Consensus 288 ~~~d~g~y~c~a~n~~g~----~~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~ 363 (516)
+.+|+|.|+|.+.|..+. ......|.|...+.. .|.... . ..
T Consensus 87 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~--~P~i~~-----------~---------------------~~ 132 (219)
T 1c1e_H 87 KNEDMATYFCARGTTIVRAMDYWGQGTSLTVSSAKTT--PPSVYP-----------L---------------------AP 132 (219)
T ss_dssp CGGGCEEEEEEEEETTTTEEEEECCCEEEEECCCCCB--CCEEEE-----------E---------------------CC
T ss_pred CcccCEEEEEEEeccCcccceeecCceEEEEecCCCC--CCeEEE-----------e---------------------cC
Confidence 999999999999997632 123456666543211 110000 0 00
Q ss_pred cEEEEcCCeEEEEEEEee-ecCC-ceEEEECCeecCCCCceEEEEcCC---eEEEEEcCceecCCceEEEEEEEcCCCce
Q psy7039 364 DMTVLAGEEFTITVPFSG-RPKP-TPIWTVNGDEVSPDGRIKFETSEN---QTIYRNKSAKRATDSGSYTIQLVNTVGSD 438 (516)
Q Consensus 364 ~~~v~~g~~~~l~C~~~g-~p~~-~i~W~~~~~~l~~~~~~~~~~~~~---~~~l~i~~~~~~~~~g~y~c~a~n~~G~~ 438 (516)
...+..|+.+.|.|.+.| .|.| .|.|++++..+...........+. .+.|.|.... .|.|.|+|.|.|..|..
T Consensus 133 ~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~~~~~~~~~~~~~~~~~~~~s~L~i~~~~--~d~g~Y~C~a~n~~~~~ 210 (219)
T 1c1e_H 133 GSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSP--RPSETVTCNVAHPASST 210 (219)
T ss_dssp CSSSCCSSEEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEESSSCEEEEEEEEEESSS--TTTSCCEEEEEEGGGTE
T ss_pred ccccccCCeEEEEEEcccccCCCeEEEEEeCCcccceEecCCcccCCeEEEEEEEEEeccc--CCCCEEEEEEEeCCCCc
Confidence 112357999999999998 8888 999999987642110000011111 1468884443 35599999999998876
Q ss_pred eEEEEE
Q psy7039 439 SASCKV 444 (516)
Q Consensus 439 s~s~~l 444 (516)
.....+
T Consensus 211 ~~~~~i 216 (219)
T 1c1e_H 211 KVDKKI 216 (219)
T ss_dssp EEEEEC
T ss_pred cEEEec
Confidence 554443
|
| >3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.36 E-value=8.4e-12 Score=111.49 Aligned_cols=178 Identities=15% Similarity=0.131 Sum_probs=115.1
Q ss_pred CCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCCCeE----EeEEeecCCcEEEeCCCcCCCeEEEEEEEe
Q psy7039 15 GKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWE----KAVVVPAGETSCTVPGLIEGETYQFQVRAV 90 (516)
Q Consensus 15 ~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~~~~----~~~~~~~~~~~~~i~~l~~~~~y~~~~~a~ 90 (516)
.+|..+.+ .....+.|.+.... + .+. ...+.|...+.... ...........|.|.+++..|.|.|+|.+.
T Consensus 13 ~~~~~~~v--~~G~~v~L~C~~~~--~-~p~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~ 86 (201)
T 3s97_C 13 EERPEVRV--KEGKGMVLLCDPPY--H-FPD-DLSYRWLLNEFPVFITMDKRRFVSQTNGNLYIANVEASDKGNYSCFVS 86 (201)
T ss_dssp SCCCCEEE--ETTCCEEECCCCCS--E-ESS-CCEEEEEESSTTCBCCCSSSEEECTTTCCEEESSCCGGGCEEEEEEEE
T ss_pred CCCceEEE--ECCCCEEEeccccc--c-CCC-ceEEEEEECCceeeeeeCCCeEEEcCCCeEEECcCCcccCeEEEEEEE
Confidence 34455444 35667888887211 1 111 14455555443110 111222346789999999999999999999
Q ss_pred cCCCCCCCCCCCcceEec----cCCCCCccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecC
Q psy7039 91 NAAGPGEASKPTAPIVAK----PKNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLS 166 (516)
Q Consensus 91 n~~g~~~~s~~~~~~~~~----~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (516)
|..+..........+... ....+|.+. .......+.+|+.+.|.|.+. +
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~~~~~~~~g~~~~l~C~~~--------------------------g 139 (201)
T 3s97_C 87 SPSITKSVFSKFIPLIPIPERTTKPYPADIV-VQFKDVYALMGQNVTLECFAL--------------------------G 139 (201)
T ss_dssp EGGGTEEEECCCEEEEEECCSSCCCEEEEEE-EECCCEEEETTCCEEEEEEEE--------------------------E
T ss_pred ecCCCcchhhcccceeeccccccCCCCCceE-ecCCceEEecCCcEEEEEEcc--------------------------C
Confidence 866543221112211111 112345454 333478899999999999999 8
Q ss_pred cCceeeEEeeCCeeeccCCceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEEee
Q psy7039 167 EPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVT 229 (516)
Q Consensus 167 ~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~~ 229 (516)
.|.+.+.|++++..+....+ + ......|.|.+++.+|+|.|+|.+.|..|.......+.
T Consensus 140 ~p~p~v~W~~~~~~~~~~~~--~--~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~ 198 (201)
T 3s97_C 140 NPVPDIRWRKVLEPMPSTAE--I--STSGAVLKIFNIQLEDEGIYECEAENIRGKDKHQARIY 198 (201)
T ss_dssp ESCCEEEEEETTBCCCTTCE--E--ETTTTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEE
T ss_pred CCCCceEEEeCCCcCCCcee--e--cCCCCEEEEccCChhhCEEEEEEEEecCCceeeeEEEE
Confidence 99999999999987764422 2 22345899999999999999999999998876655443
|
| >2e3v_A Neural cell adhesion molecule 1, 140 kDa isoform; NCAM, N-CAM 1, NCAM-120, CD56 antigen, membra protein, glycoprotein, structural genomics, NPPSFA; HET: PGE BTB; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.36 E-value=3.3e-12 Score=104.62 Aligned_cols=95 Identities=24% Similarity=0.369 Sum_probs=75.5
Q ss_pred CCCCCCCCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCC-CeEEeE---EeecCCcEEEeCCCcCCCeEE
Q psy7039 9 NPFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTG-NWEKAV---VVPAGETSCTVPGLIEGETYQ 84 (516)
Q Consensus 9 ~~~~~p~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~-~~~~~~---~~~~~~~~~~i~~l~~~~~y~ 84 (516)
..++.|++|.++.+...+++ +.|+|.+|..+++.+|.+|.|+|+..+. .|.... ......++++|.+|++++.|.
T Consensus 3 s~~~~P~~P~~~~~~~~~~t-v~l~W~~P~~~~G~pI~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~ 81 (122)
T 2e3v_A 3 SGSSGPSSPSIDQVEPYSST-AQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASMEGIVTIVGLKPETTYA 81 (122)
T ss_dssp ---CCCCCCEEEEEEECSSC-EEEEEECCCCC--CCEEEEEEEEEETTCCSCEEEEEEHHHHHTTTEEEECSCCTTCEEE
T ss_pred CCCcCCcCCCccEEEecCCc-EEEEECCCCcCCCCcceEEEEEEEECCCCCcccceeeeeecCccceEEeCCCCCCCEEE
Confidence 35788999999999988777 9999999977777779999999998766 784322 122467899999999999999
Q ss_pred EEEEEecCCCCCCCCCCCcc
Q psy7039 85 FQVRAVNAAGPGEASKPTAP 104 (516)
Q Consensus 85 ~~~~a~n~~g~~~~s~~~~~ 104 (516)
|+|+|.|..|.+.++.....
T Consensus 82 ~rV~A~n~~G~g~~S~~~~~ 101 (122)
T 2e3v_A 82 VRLAALNGKGLGEISAASEF 101 (122)
T ss_dssp EEEEEEETTEECCCCCCEEE
T ss_pred EEEEEEeCCccCCCcccccc
Confidence 99999999999988765443
|
| >2haz_A N-CAM 1, neural cell adhesion molecule 1; fibronectin type III repeat, FN1, beta sandwich; 1.70A {Homo sapiens} SCOP: b.1.2.1 | Back alignment and structure |
|---|
Probab=99.36 E-value=1.8e-12 Score=103.12 Aligned_cols=92 Identities=26% Similarity=0.429 Sum_probs=76.9
Q ss_pred CCCCCCCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCC-CeEEeEE---eecCCcEEEeCCCcCCCeEEE
Q psy7039 10 PFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTG-NWEKAVV---VPAGETSCTVPGLIEGETYQF 85 (516)
Q Consensus 10 ~~~~p~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~-~~~~~~~---~~~~~~~~~i~~l~~~~~y~~ 85 (516)
+++.|++|.++.+....++ +.|+|.+|..++|.+|.+|.|+|+..+. .|..... .....++++|.+|++++.|.|
T Consensus 3 ~~~~P~~P~~~~~~~~~~~-v~l~W~~P~~~~G~pi~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~ 81 (105)
T 2haz_A 3 HMDTPSSPSIDQVEPYSST-AQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASMEGIVTIVGLKPETTYAV 81 (105)
T ss_dssp CCCCCCCCEEEEEEECSSC-EEEEEECCSCCTTSCCCEEEEEEEETTCCCCEEEEEEHHHHHHHSEEEECSCCTTCEEEE
T ss_pred CCCCCcCCCCCEEEEcCCc-EEEEEcCCcccCCccccEEEEEEEECCCCCCccceEEccccCCccEEEECCCCCCCEEEE
Confidence 5788999999999988777 9999999977777779999999998776 5754322 122568999999999999999
Q ss_pred EEEEecCCCCCCCCCCC
Q psy7039 86 QVRAVNAAGPGEASKPT 102 (516)
Q Consensus 86 ~~~a~n~~g~~~~s~~~ 102 (516)
+|+|.|..|.+.++...
T Consensus 82 rV~A~n~~G~g~~S~~~ 98 (105)
T 2haz_A 82 RLAALNGKGLGEISAAS 98 (105)
T ss_dssp EEEEEETTEECCCCCCE
T ss_pred EEEEEcCCccCCCcCCE
Confidence 99999999998877654
|
| >1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L* 1mfb_L* ... | Back alignment and structure |
|---|
Probab=99.36 E-value=7.1e-12 Score=113.33 Aligned_cols=156 Identities=9% Similarity=0.046 Sum_probs=103.1
Q ss_pred ccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcC---ceeeEEeeCC--eee------------cc
Q psy7039 121 LNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEP---FLNHGWSING--QVC------------QI 183 (516)
Q Consensus 121 ~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p---~~~i~W~~~~--~~~------------~~ 183 (516)
+..+.+.+|+.+.|.|.+. +.| .+.+.|++++ ..+ ..
T Consensus 7 p~~~~v~~G~~v~L~C~~~--------------------------~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~ 60 (212)
T 1q0x_L 7 ESALTTSPGETVTLTCRSS--------------------------TGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGV 60 (212)
T ss_dssp CSEEEECTTCCEEEEEEES--------------------------SSCCCGGGCCEEEEEETTTEEEEEEETTTEECTTC
T ss_pred CCeEeecCCCCEEEEEEec--------------------------ccccCCCCeEEEEEeCCCCCceEEEEcCcccCCcc
Confidence 5668899999999999998 665 4678888742 222 11
Q ss_pred CCceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCceE---EEEEee-----ceeeee----ccccCCceEEEEEEEE
Q psy7039 184 GGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTAT---ASAHVT-----GTEFTD----NNVHEGKAYEYRVSAV 251 (516)
Q Consensus 184 ~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~---~~~~~~-----~~~~~~----~~l~~g~~~~~~~~~~ 251 (516)
..|+.+...+...+|.|.+++.+|+|.|.|.+.+..+... ..+.+. ...+.. .....|..+.+.|.+
T Consensus 61 ~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~- 139 (212)
T 1q0x_L 61 PARFSGSLIGDKAALTITGAQTEDEAIYFCALWSNNKLVFGGGTKLTVLGQPKSSPTVTLFPPSSEELSTAKATLVCTI- 139 (212)
T ss_dssp CTTEEEEEETTEEEEEESSCCGGGCEEEEEEEECSSCEEECCCEEEEECCSCCBCCEEEEECCCHHHHTTTEEEEEEEE-
T ss_pred cccEEEEeeCCEEEEEECCCCccCCEEEEEEEecCchhhcCCCeEEEEecCCCCCCeeEEeCCCHHHccCCcEEEEEEE-
Confidence 3566665556677999999999999999999998765321 122221 111111 112358899999998
Q ss_pred ccCCC-CCc-eeccccccc---ceEE---EEEec-----ceeeEEEccCCCCCceEEEEEEEecCCC
Q psy7039 252 NAAGT-EKP-KISLDALIG---KRIK---EFVTS-----TTASLNIKNSVRKDSGIYKIEAKNDYGI 305 (516)
Q Consensus 252 ~~~g~-p~p-~i~W~~~~~---~~~~---~~~~~-----~~~~l~i~~l~~~d~g~y~c~a~n~~g~ 305 (516)
.|. |++ .+.|.+... .... ..... ....|.|.....+|.|.|+|.|.|....
T Consensus 140 --~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~ 204 (212)
T 1q0x_L 140 --TDFYPGVVTVDWKVDGTPVTAGMETTQPSKQSNNKYMASSYLTLTARAWERHSSYSCQVTHEGHS 204 (212)
T ss_dssp --EEEBSSCCEEEEEETTEEECTTEEECCCEECTTSCEEEEEEEEEEHHHHTTCCEEEEEEEETTEE
T ss_pred --EEEeCCCeEEEEEECCEeCCCCeecCCceeCCCCCEEEEEEEEEcHHHccCCCcEEEEEEeCCcc
Confidence 443 443 899965211 0010 01111 1246888889899999999999997654
|
| >1wfu_A Unnamed protein product; FN3 domain, similar to 1700007B22RIK protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.1.2.1 | Back alignment and structure |
|---|
Probab=99.35 E-value=4.4e-12 Score=102.76 Aligned_cols=91 Identities=16% Similarity=0.191 Sum_probs=73.3
Q ss_pred CCCCCCCCcceEEEeeeCCeeEEEecCCCCCC---CCc-eeceEEEEEeCCC-CeEEeEEeecCCcEEEeCCCcCCCeEE
Q psy7039 10 PFDEPGKPTDLEATDWDKDHVDLQWTPPISDG---GSP-ITGYVVEMKDKTG-NWEKAVVVPAGETSCTVPGLIEGETYQ 84 (516)
Q Consensus 10 ~~~~p~~p~~l~~~~~~~~~v~l~W~~p~~~~---~~~-i~~Y~v~~~~~~~-~~~~~~~~~~~~~~~~i~~l~~~~~y~ 84 (516)
...+|++|..+.+..++.++|.|+|.+|..++ +.+ |++|.|+..+... .|..+... ..+.++|.+|++++.|.
T Consensus 12 ~~~pp~~P~~p~v~~vt~~Sv~LsW~~p~~~g~~~g~~~I~~Y~ve~~~~~~~~~~~v~~~--~~t~~~v~gL~p~t~Y~ 89 (120)
T 1wfu_A 12 KVVPLSKPHPPVVGKVTHHSIELYWDLEQKEKRQGPQEQWLRFSIEEEDPKMHSYGVIYTG--YATRHVVEGLEPRTLYK 89 (120)
T ss_dssp TCCCCCCCCCCBCCCEETTEEEEECTTTSCSCCCSCGGGCCEEEEEEECTTTCCEEEEEEE--SCSEEEEESCCTTCEEE
T ss_pred eeCCCCCCCCceeceEECCEEEEEECCCccCCccCCCCceEEEEEEEecCCCCceEEEecC--CccEEEECCCCCCCEEE
Confidence 34566677777778899999999999997666 666 9999999554343 78776544 56789999999999999
Q ss_pred EEEEEecCCCCCCCCCCC
Q psy7039 85 FQVRAVNAAGPGEASKPT 102 (516)
Q Consensus 85 ~~~~a~n~~g~~~~s~~~ 102 (516)
|+|+|.|..|.+.++...
T Consensus 90 frV~A~n~~G~s~~S~~~ 107 (120)
T 1wfu_A 90 FRLKVTSPSGEYEYSPVV 107 (120)
T ss_dssp EEEEEECSSSCEEECCCE
T ss_pred EEEEEECCCCCCCCCccE
Confidence 999999999998876643
|
| >3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; anti-CD3epsilon, T-cell receptor, signalling, IMMU; 2.50A {Cricetulus migratorius} PDB: 3r08_L 3ld8_B 3ldb_B* | Back alignment and structure |
|---|
Probab=99.35 E-value=6.1e-12 Score=113.84 Aligned_cols=160 Identities=8% Similarity=0.042 Sum_probs=104.2
Q ss_pred CcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCC--eee------------ccC
Q psy7039 119 STLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSING--QVC------------QIG 184 (516)
Q Consensus 119 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~--~~~------------~~~ 184 (516)
..+..+.+.+|+.+.|.|.+. +.|.+.+.|++.. ... ...
T Consensus 6 ~~p~~~~v~~G~~v~L~C~~~--------------------------~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~ 59 (213)
T 3r06_A 6 QSPSSLPASLGDRVTINCQAS--------------------------QDISNYLNWYQQKPGKAPKLLIYYTNKLADGVP 59 (213)
T ss_dssp EECSEEEECTTCCEEEEEEES--------------------------SCCTTCEEEEEECTTSCCEEEEETTTEECTTCC
T ss_pred eCCCEEEecCCCcEEEEEEeC--------------------------CCcCceEEEEEECCCCCcEEEEEEcCcCCCCCC
Confidence 345678899999999999999 7788889998732 110 123
Q ss_pred CceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCceE---EEEEeec----eeee----eccccCCceEEEEEEEEcc
Q psy7039 185 GRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTAT---ASAHVTG----TEFT----DNNVHEGKAYEYRVSAVNA 253 (516)
Q Consensus 185 ~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~---~~~~~~~----~~~~----~~~l~~g~~~~~~~~~~~~ 253 (516)
.|+.+...+...+|.|.+++.+|+|.|.|.+.+..+... ..+.+.. ..+. ......|..+.+.|.+
T Consensus 60 ~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~~~~v~l~C~~--- 136 (213)
T 3r06_A 60 SRFSGSGSGRDSSFTISSLESEDIGSYYCQQYYNYPWTFGPGTKLEIKRADAKPTVSIFPPSSEQLGTGSATLVCFV--- 136 (213)
T ss_dssp TTEEEEEETTEEEEEESSCCGGGCSEEEEEECSSSSCEECCCEEEEECCCCBCCEEEEECCCHHHHTTTEEEEEEEE---
T ss_pred CcEEEeccCCEEEEEECCCCcccCEEEEEecccCCceEEcCCceEEEeccCCCceeeeeCCCceecCCCCcEEEEEE---
Confidence 567666666778999999999999999999988653221 1222210 1111 1123357789999998
Q ss_pred CCCC--Cceeccccccc----ce-EEEE-Eecc------eeeEEEccCCCCCceEEEEEEEecCCCcc
Q psy7039 254 AGTE--KPKISLDALIG----KR-IKEF-VTST------TASLNIKNSVRKDSGIYKIEAKNDYGIDM 307 (516)
Q Consensus 254 ~g~p--~p~i~W~~~~~----~~-~~~~-~~~~------~~~l~i~~l~~~d~g~y~c~a~n~~g~~~ 307 (516)
.|.+ .+.+.|.+... .. .... .... ...|.|.....+|.|.|+|.|.|......
T Consensus 137 ~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~g~YtC~v~n~~~~~~ 204 (213)
T 3r06_A 137 NNFYPKDINVKWKVDGSEKRDGVLQSVTDQDSKDSTYSLSSTLSLTKADYERHNLYTCEVTHKTSTAA 204 (213)
T ss_dssp EEEBSSCEEEEEEETTEEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEEETTCSSC
T ss_pred eeecCCceEEEEEECCcccCCceEeccCceeCCCCcEEEEEEEEeCHHHhccCCeEEEEEEecccCcc
Confidence 4433 35899965211 10 1000 0111 23577788888889999999999865543
|
| >1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.35 E-value=8e-12 Score=116.58 Aligned_cols=172 Identities=15% Similarity=0.074 Sum_probs=112.1
Q ss_pred ccccCCceEEEEEEEEccCCCCCceecccccccceEE--EE----EecceeeEEEccCCCCCceEEEEEEEecCC-----
Q psy7039 236 NNVHEGKAYEYRVSAVNAAGTEKPKISLDALIGKRIK--EF----VTSTTASLNIKNSVRKDSGIYKIEAKNDYG----- 304 (516)
Q Consensus 236 ~~l~~g~~~~~~~~~~~~~g~p~p~i~W~~~~~~~~~--~~----~~~~~~~l~i~~l~~~d~g~y~c~a~n~~g----- 304 (516)
..+.+|+.+.+.|.+ .+ +.+.+.|.+....... .. .......|.|.+++.+|+|.|+|.+.|...
T Consensus 16 ~~V~~G~~VtL~C~~---~~-~~~~~~W~k~g~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~~~~~~s 91 (257)
T 1b6u_A 16 PLVKSEETVILQCWS---DV-RFQHFLLHREGKFKDTLHLIGEHHDGVSKANFSIGPMMQDLAGTYRCYGSVTHSPYQLS 91 (257)
T ss_dssp SEEESSCCEEEEEEE---SS-CCSEEEEEEESTTCEEEEEECBCCTTCEEEEEEECSCCTTTCEEEEEEEECSSCTTSCC
T ss_pred CEecCCCCEEEEEec---CC-CCcEEEEEECCCCCCcceeeeeccCCCceEEEEeecCCcccCEEEEEeEeccCCCcccc
Confidence 346789999999998 33 4678889653322111 10 123467899999999999999999986532
Q ss_pred CcceeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeeecC
Q psy7039 305 IDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPK 384 (516)
Q Consensus 305 ~~~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~ 384 (516)
..+..+.|.|......|. +. ......+.+|++++|.|.+.+.+
T Consensus 92 ~~S~~~~L~V~~~~~~P~--l~----------------------------------~~p~~~V~~G~~vtL~C~~~~~~- 134 (257)
T 1b6u_A 92 APSDPLDIVITGLYEKPS--LS----------------------------------AQPGPTVLAGESVTLSCSSRSSY- 134 (257)
T ss_dssp CCCCCEEEEEECSSCCCE--EE----------------------------------CSSCTTCBTTCEEEEEEECSSCC-
T ss_pred ccCCCEEEecccCCCCcc--eE----------------------------------ccCCCccCCCCEEEEEEeCCCCC-
Confidence 234456777776433221 00 00112467999999999998764
Q ss_pred CceEEEECCeecCCCCceEEE-EcCCeEEEEEcCceecCCceEEEEEEEcCCC-----ceeEEEEEEEecCCC
Q psy7039 385 PTPIWTVNGDEVSPDGRIKFE-TSENQTIYRNKSAKRATDSGSYTIQLVNTVG-----SDSASCKVYVVDKPS 451 (516)
Q Consensus 385 ~~i~W~~~~~~l~~~~~~~~~-~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G-----~~s~s~~l~v~~~p~ 451 (516)
+.+.|++++..+......... .......|.|.++. |+|.|+|.|.|..+ ..+....|.|...|.
T Consensus 135 ~~~~w~k~g~~~~~~~~~~~~~~~~~~~~l~I~~v~---D~G~Y~C~a~~~~~p~~~s~~S~pl~L~V~g~p~ 204 (257)
T 1b6u_A 135 DMYHLSREGEAHERRFSAGPKVNGTFQADFPLGPAT---HGGTYRCFGSFRDSPYEWSNSSDPLLVSVTGNPS 204 (257)
T ss_dssp SEEEEEETTSSCEECCBCBCCSSSCCBEEEEEEECC---SCEEEEEEEECSSCTTBBCCCCCCEEECCBCCC-
T ss_pred cEEEEEECCcccCcccccccccCCceeEEEEecccc---cCEEEEEEEEcCCCCcccccCCCCEEEEEeccCC
Confidence 689999999765432211111 11235679998884 99999999998643 235557788877654
|
| >2ed7_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.35 E-value=1e-11 Score=101.14 Aligned_cols=96 Identities=27% Similarity=0.390 Sum_probs=81.2
Q ss_pred eccCCCCCCCCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCC-CeEEeEEeecCCcEEEeCCCcCCCeEE
Q psy7039 6 LIKNPFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTG-NWEKAVVVPAGETSCTVPGLIEGETYQ 84 (516)
Q Consensus 6 ~~~~~~~~p~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~-~~~~~~~~~~~~~~~~i~~l~~~~~y~ 84 (516)
.+.++.++|++|.+|++..+++++|.|+|.+|. +.+++|.+|.|+|+..+. .|..........+.+.|.+|+++..|.
T Consensus 10 ~~~~~~~~P~~P~~l~~~~~~~~sv~l~W~~p~-~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~ 88 (119)
T 2ed7_A 10 AIPSSSVLPSAPRDVVPVLVSSRFVRLSWRPPA-EAKGNIQTFTVFFSREGDNRERALNTTQPGSLQLTVGNLKPEAMYT 88 (119)
T ss_dssp SCCCSSSSCCCCSCCEEEEECSSCEEEECCCCS-CCSSCEEEEEEEEEESSCCCCEEEECCCTTCCEEEECSCCSSSEEE
T ss_pred cCCCCCCCCcCCcceEEEecCCCEEEEEEeCCC-CCCCcEEEEEEEEEeCCCCcceeeEeecCCceEEEeCCCCCCCEEE
Confidence 455678899999999999999999999999986 456679999999998766 565554444568999999999999999
Q ss_pred EEEEEecCCCCCCCCCCC
Q psy7039 85 FQVRAVNAAGPGEASKPT 102 (516)
Q Consensus 85 ~~~~a~n~~g~~~~s~~~ 102 (516)
|+|+|.|..|.+.++...
T Consensus 89 ~~V~A~n~~G~g~~S~~~ 106 (119)
T 2ed7_A 89 FRVVAYNEWGPGESSQPI 106 (119)
T ss_dssp ECCEEEESSCBCSCCCCE
T ss_pred EEEEEEcCCccCCCcCCE
Confidence 999999999988876544
|
| >2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens} PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A 3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L 3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ... | Back alignment and structure |
|---|
Probab=99.35 E-value=1.7e-11 Score=111.18 Aligned_cols=159 Identities=9% Similarity=0.014 Sum_probs=102.4
Q ss_pred ccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcC-ceeeEEeeCC--eee------------ccCC
Q psy7039 121 LNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEP-FLNHGWSING--QVC------------QIGG 185 (516)
Q Consensus 121 ~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~i~W~~~~--~~~------------~~~~ 185 (516)
+..+.+.+|+.+.|.|.+.+ +.+ .+.+.|++++ ..+ ....
T Consensus 7 p~~~~v~~G~~v~L~C~v~~-------------------------~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~ 61 (216)
T 2xzc_L 7 PPSVSAAPGQKVTISCSGSS-------------------------SNIGNNYVSWYQQLPGTAPKLLIYDNNKRPSGIPD 61 (216)
T ss_dssp CSEEEECTTCCEEEEEECCT-------------------------TTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTCCT
T ss_pred CCcEEecCCCeEEEEEEeec-------------------------CCCCCCeEEEEEeCCCCCcEEEEEecCccCCCCCC
Confidence 56688999999999999540 332 5678888743 111 1134
Q ss_pred ceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCc----eEEEEEeec----eeeee----ccccCCceEEEEEEEEcc
Q psy7039 186 RADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGT----ATASAHVTG----TEFTD----NNVHEGKAYEYRVSAVNA 253 (516)
Q Consensus 186 ~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~----~~~~~~~~~----~~~~~----~~l~~g~~~~~~~~~~~~ 253 (516)
|+.+...+...+|.|.+++.+|+|.|.|.+.|..+. ....+.+.. ..+.. .....|..+.+.|.+
T Consensus 62 r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~--- 138 (216)
T 2xzc_L 62 RFSGSKSGTSATLGITGLQTGDEADYYCGTWDSSLNPVFGGGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLL--- 138 (216)
T ss_dssp TEEEEEETTEEEEEECSCCGGGCEEEEEEEECTTSCEEEBCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEE---
T ss_pred ceEEeccCCEEEEEECCCCcccCEEEEEEEEeCCCcceECCCEEEEEcCCCCCCceEEeCCChhhccCCcEEEEEEE---
Confidence 666665666779999999999999999999997751 111222211 11111 011247899999998
Q ss_pred CC-CCCc-eeccccccc---ce-EEE-EE--ec-----ceeeEEEccCCCCCceEEEEEEEecCCCcc
Q psy7039 254 AG-TEKP-KISLDALIG---KR-IKE-FV--TS-----TTASLNIKNSVRKDSGIYKIEAKNDYGIDM 307 (516)
Q Consensus 254 ~g-~p~p-~i~W~~~~~---~~-~~~-~~--~~-----~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~ 307 (516)
.| .|+| .+.|.+... .. ... .. .. ....|.|..+..+|.|.|+|.|.|......
T Consensus 139 ~g~~P~~~~v~W~k~g~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~ 206 (216)
T 2xzc_L 139 NNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSP 206 (216)
T ss_dssp EEEBSSCCEEEEEETTEECCSSEEEEECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCSSC
T ss_pred EeEcCCceEEEEEECCeecCCCeeEecCcccCCCCCEEEEEEEEECHHHhCCCCcEEEEEEcCCCCCc
Confidence 44 4554 899966211 11 111 00 11 123788999999999999999999875544
|
| >1x5f_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 | Back alignment and structure |
|---|
Probab=99.35 E-value=8.3e-12 Score=101.90 Aligned_cols=99 Identities=25% Similarity=0.307 Sum_probs=82.6
Q ss_pred cceeccCCCCCCCCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCC-CeEEeEEeecCCcEEEeCCCcCCC
Q psy7039 3 HSVLIKNPFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTG-NWEKAVVVPAGETSCTVPGLIEGE 81 (516)
Q Consensus 3 ~~~~~~~~~~~p~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~-~~~~~~~~~~~~~~~~i~~l~~~~ 81 (516)
..+.+.+..++|++|.+|++..++.++|.|+|.+|..+.++.|.+|+|+|+..+. .|..........++++|.+|++++
T Consensus 7 ~~~~~~t~~~~P~~P~~l~~~~~~~~sv~l~W~~p~~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t 86 (120)
T 1x5f_A 7 GEHAPATTGPLPSAPRDVVASLVSTRFIKLTWRTPASDPHGDNLTYSVFYTKEGIARERVENTSHPGEMQVTIQNLMPAT 86 (120)
T ss_dssp SSCCCCCCCCCCCCCEEEEEEEECSSCEEEEEECCSSCSSCCSSEEEEEEEETTCCCCEEEECSSTTCSEEEECSCCTTC
T ss_pred CCEEecCCCCCCCCCCCcEEEecCCCEEEEEECCCCCCCCCcEEEEEEEEEECCCCCceEEEeccCCccEEEeCCCCCCC
Confidence 4566778899999999999999999999999999861344589999999998765 565554455568999999999999
Q ss_pred eEEEEEEEecCCCCCCCCCC
Q psy7039 82 TYQFQVRAVNAAGPGEASKP 101 (516)
Q Consensus 82 ~y~~~~~a~n~~g~~~~s~~ 101 (516)
.|.|+|+|.|..|.+.++..
T Consensus 87 ~Y~~~V~A~n~~G~g~~S~~ 106 (120)
T 1x5f_A 87 VYIFRVMAQNKHGSGESSAP 106 (120)
T ss_dssp EEEEEEEEECSSCEEEECCC
T ss_pred EEEEEEEEECCCccCCCCCC
Confidence 99999999999998776543
|
| >2ee2_A Contactin-1; neural cell surface protein F3, glycoprotein GP135, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.35 E-value=1.9e-11 Score=99.63 Aligned_cols=98 Identities=20% Similarity=0.339 Sum_probs=80.5
Q ss_pred CcceeccCCCCCCC-CCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCC--CeEEeEEeecCCcEEEeCCCc
Q psy7039 2 DHSVLIKNPFDEPG-KPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTG--NWEKAVVVPAGETSCTVPGLI 78 (516)
Q Consensus 2 ~~~~~~~~~~~~p~-~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~--~~~~~~~~~~~~~~~~i~~l~ 78 (516)
|..+.+++.++.|. +|.+|++..++.++|.|+|.+|.. +.|.+|.|+|+..+. .+........+.++++|.+|+
T Consensus 6 S~~~~~~T~~~~P~~~P~~l~~~~~~~~sv~l~W~~p~~---g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~ 82 (119)
T 2ee2_A 6 SGVAVINSAQDAPSEAPTEVGVKVLSSSEISVHWEHVLE---KIVESYQIRYWAAHDKEEAANRVQVTSQEYSARLENLL 82 (119)
T ss_dssp SSCCCCCCCSCCCCCCCCSCEEEEEETTEEEEECCCCSC---TTCCEEEEEEEESSSCGGGCEEEEEETTCSEEEECSCC
T ss_pred CCCEEEECCCcCCCCCCCcEEEEEccCCEEEEEecCCCC---CccceEEEEEEECCCcccCcEEEEcCCCEeEEEECCCC
Confidence 56788899988887 788999999999999999999854 569999999987654 222233444567899999999
Q ss_pred CCCeEEEEEEEecCCCCCCCCCCC
Q psy7039 79 EGETYQFQVRAVNAAGPGEASKPT 102 (516)
Q Consensus 79 ~~~~y~~~~~a~n~~g~~~~s~~~ 102 (516)
+++.|.|+|+|.|..|.+.++...
T Consensus 83 p~t~Y~~~V~A~n~~G~g~~S~~~ 106 (119)
T 2ee2_A 83 PDTQYFIEVGACNSAGCGPPSDMI 106 (119)
T ss_dssp TTCEEEEEEEEECSSSCCCCCCCE
T ss_pred CCCEEEEEEEEEcCCccCCCCCCE
Confidence 999999999999999988876543
|
| >3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B* 1h3p_L | Back alignment and structure |
|---|
Probab=99.34 E-value=6.4e-12 Score=117.06 Aligned_cols=165 Identities=12% Similarity=0.095 Sum_probs=107.6
Q ss_pred ccccCCceEEEEEEEEccCCCC-----Cceecccccc-------------------cceEEEEEecceeeEEEccCCCCC
Q psy7039 236 NNVHEGKAYEYRVSAVNAAGTE-----KPKISLDALI-------------------GKRIKEFVTSTTASLNIKNSVRKD 291 (516)
Q Consensus 236 ~~l~~g~~~~~~~~~~~~~g~p-----~p~i~W~~~~-------------------~~~~~~~~~~~~~~l~i~~l~~~d 291 (516)
..+.+|+.+.+.|.+ .|.+ .+.+.|.+.. ..++.+........|.|.+++.+|
T Consensus 44 ~~v~~G~~v~L~C~~---~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D 120 (252)
T 3bkj_L 44 LPVNLGEQASISCRS---SQSIVHSNGHTYLEWYLQRPGQSPKLLIYQVSTRFSGVPDRFSGSGSGTDFTLRISRVEAED 120 (252)
T ss_dssp EEECTTSCEEEEEEE---SSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGG
T ss_pred EEEeCCCcEEEEEEc---CCCccccCCCCcEEEEEECCCCCcEEEEEcCCcccCCcCCceEEEccCCEEEEEECCCCccc
Confidence 346789999999998 6666 6889996521 123333334556689999999999
Q ss_pred ceEEEEEEEecCCCc-ceeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcC
Q psy7039 292 SGIYKIEAKNDYGID-MADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAG 370 (516)
Q Consensus 292 ~g~y~c~a~n~~g~~-~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g 370 (516)
+|.|+|.+.|..+.. .....+.|.....+|. +.+. .....+..|
T Consensus 121 ~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~P~--v~~~---------------------------------~~~~~~~~g 165 (252)
T 3bkj_L 121 LGVYYCFQASLVPLTFGAGTKLELKRADAAPT--VSIF---------------------------------PPSSEQLTS 165 (252)
T ss_dssp CEEEEEEECSBSSCEECCCEEEEECCCCBCCE--EEEE---------------------------------CCCHHHHHH
T ss_pred CEEEEEEEEcCCccEECCCEEEEEeCCCcCcE--EEEe---------------------------------CCChhhcCC
Confidence 999999999876532 2234566644322221 0000 000112368
Q ss_pred CeEEEEEEEeeecC-C-ceEEEECCeecCCCCceE--EEEcCC-----eEEEEEcCceecCCceEEEEEEEcCCCcee
Q psy7039 371 EEFTITVPFSGRPK-P-TPIWTVNGDEVSPDGRIK--FETSEN-----QTIYRNKSAKRATDSGSYTIQLVNTVGSDS 439 (516)
Q Consensus 371 ~~~~l~C~~~g~p~-~-~i~W~~~~~~l~~~~~~~--~~~~~~-----~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s 439 (516)
+.+.|.|.+.|.++ + .+.|++++..+....... .....+ .+.|.|..+.. .|.|.|+|.|.|......
T Consensus 166 ~~v~L~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~-~d~g~Y~C~a~n~~~~~p 242 (252)
T 3bkj_L 166 GGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEY-ERHNSYTCEATHKTSTSP 242 (252)
T ss_dssp TEEEEEEEEEEEBSSCCEEEEEETTEEECSSEEEEECCCCTTTCCEEEEEEEEEEHHHH-HHCCEEEEEEECTTCSSC
T ss_pred CcEEEEEEEeeEeCCCcEEEEEECCeecCCCeeeecCcccCCCCCEEEEEEEEEcchhc-cCCCeEEEEEEeCCCCCC
Confidence 89999999998544 3 799999998765430110 000111 14689999998 999999999999876543
|
| >3sob_L Antibody light chain; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L* | Back alignment and structure |
|---|
Probab=99.34 E-value=1.5e-11 Score=113.21 Aligned_cols=162 Identities=7% Similarity=0.065 Sum_probs=107.1
Q ss_pred CcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCC--ee------------eccC
Q psy7039 119 STLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSING--QV------------CQIG 184 (516)
Q Consensus 119 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~--~~------------~~~~ 184 (516)
..+..+.+.+|+++.|.|.+. +.+.+.+.|++.. .. ....
T Consensus 29 ~~p~~~~v~~G~~v~L~C~~~--------------------------~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~ 82 (237)
T 3sob_L 29 QSPSSLSASVGDRVTITCRAS--------------------------QDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVP 82 (237)
T ss_dssp EECSEEEEETTCCEEEEEEES--------------------------SCCTTCEEEEEECTTSCCEEEEETTTEECTTCC
T ss_pred eCCCeEEEeCCCcEEEEEecC--------------------------CCCCceEEEEEECCCCCCEEEEEeccccCCCCC
Confidence 445678899999999999999 7778889998732 11 1123
Q ss_pred CceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCce---EEEEEeec----eeee----eccccCCceEEEEEEEEcc
Q psy7039 185 GRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTA---TASAHVTG----TEFT----DNNVHEGKAYEYRVSAVNA 253 (516)
Q Consensus 185 ~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~---~~~~~~~~----~~~~----~~~l~~g~~~~~~~~~~~~ 253 (516)
.|+.....+...+|.|.+++.+|+|.|.|.+.+..+.. ...+.+.. ..+. .....+|..+.+.|.+
T Consensus 83 ~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~g~~v~l~C~~--- 159 (237)
T 3sob_L 83 SRFSGSGSGTDFTLTISSLQPEDFATYYCQQSYTTPPTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLL--- 159 (237)
T ss_dssp TTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEECCCBCCEEEEECCCHHHHHHTEEEEEEEE---
T ss_pred CcEEEEcCCCEEEEEECCCChhhCeEEEEeeccCCceEEcCcEEEEEecCCCCCceEEeCCChhhccCCceEEEEEE---
Confidence 56776666678899999999999999999998865421 11222211 1111 1112347789999998
Q ss_pred CC-CC-Cceecccccccce---E-EEE--Eec------ceeeEEEccCCCCCceEEEEEEEecCCCccee
Q psy7039 254 AG-TE-KPKISLDALIGKR---I-KEF--VTS------TTASLNIKNSVRKDSGIYKIEAKNDYGIDMAD 309 (516)
Q Consensus 254 ~g-~p-~p~i~W~~~~~~~---~-~~~--~~~------~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~~ 309 (516)
.| .| .+.+.|.+..... . ... ... ....|.|.....+|.|.|+|.|.|........
T Consensus 160 ~~~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~~~ 229 (237)
T 3sob_L 160 NNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVT 229 (237)
T ss_dssp EEEBSSCCEEEEEETTEECCSSEEEEECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCSSCEE
T ss_pred cccCCCceEEEEEECCCCCCCceeecccccccCCCcEEEEEEEEEcHHHccCCCcEEEEEeeCCCCCcee
Confidence 44 34 5899997521100 0 100 001 13467888899999999999999987655433
|
| >1op3_H FAB 2G12, heavy chain; domain-swapped FAB 2G12, anti-carbohydrate antibody, immune system; HET: MAN; 1.75A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1om3_H* 1op5_H* 3oay_M* 1zlu_H* 1zlv_H* 1zlw_H* 2oqj_B 1zls_H* 3ob0_H* 3oau_H* 3oaz_H* 3ghe_H 3eyf_B 3eyo_B 3ghb_H 3c2a_H 1q1j_H 2fl5_H* | Back alignment and structure |
|---|
Probab=99.34 E-value=2.5e-11 Score=110.98 Aligned_cols=125 Identities=14% Similarity=0.112 Sum_probs=80.1
Q ss_pred ceeeEEEccCCCCCceEEEEEEEecCC-----C---cceeEEEEEecCC-CCCCCCceeeeccCCeeEEEecCCCCCCCC
Q psy7039 278 TTASLNIKNSVRKDSGIYKIEAKNDYG-----I---DMADIEVVVVSKP-GPPTGPIDYTTVTPESVSMSWKPPVDDGGT 348 (516)
Q Consensus 278 ~~~~l~i~~l~~~d~g~y~c~a~n~~g-----~---~~~~~~l~v~~~p-~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~ 348 (516)
....|.|.+++.+|+|.|.|.+.|..| . ......|.|...+ .+|. +... +|
T Consensus 77 ~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~--v~~~------------~~------ 136 (225)
T 1op3_H 77 DFVYLQMHKMRVEDTAIYYCARKGSDRLSDNDPFDAWGPGTVVTVSPASTKGPS--VFPL------------AP------ 136 (225)
T ss_dssp TEEEEEECSCCGGGCEEEEEEEECCSSCCSSCCEEEECCCEEEEEESCSCBCCE--EEEE------------CC------
T ss_pred CEEEEEECCCChhhCEEEEEEEecCCCccccccceeecCCEEEecccCCCcCCe--EEEe------------cc------
Confidence 456899999999999999999998765 1 1123566676522 1110 0000 00
Q ss_pred ceeeccccccccccccEEEEcCCeEEEEEEEeee-cCC-ceEEEECCeecCCCCceEEEEcCC----eEEEEEcCceecC
Q psy7039 349 PITGAPKITSDLSIRDMTVLAGEEFTITVPFSGR-PKP-TPIWTVNGDEVSPDGRIKFETSEN----QTIYRNKSAKRAT 422 (516)
Q Consensus 349 ~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~-p~~-~i~W~~~~~~l~~~~~~~~~~~~~----~~~l~i~~~~~~~ 422 (516)
. ..+..|+.+.|.|.+.|. |.+ .+.|++++..+............+ .+.|.|..+.. +
T Consensus 137 --------------~-~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~-~ 200 (225)
T 1op3_H 137 --------------S-SKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSL-G 200 (225)
T ss_dssp --------------C-TTCCCCCEEEEEEEEEEEBSSCCEEECCTTSCCTTCEECCCEECTTSCEEEEEEEEEEGGGT-T
T ss_pred --------------c-ccccCCCcEEEEEEEEeEECCCeEEEEecCCCcCCeEecCceeCCCCCEEEEEEEEEechhc-C
Confidence 0 013578999999999987 666 999999886532110000001111 24689988887 7
Q ss_pred CceEEEEEEEcCCCcee
Q psy7039 423 DSGSYTIQLVNTVGSDS 439 (516)
Q Consensus 423 ~~g~y~c~a~n~~G~~s 439 (516)
| |.|+|.|.|..+...
T Consensus 201 ~-g~Y~C~a~n~~~~~~ 216 (225)
T 1op3_H 201 T-QTYICNVNHKPSNTK 216 (225)
T ss_dssp C-CCCCEEEEEGGGTEE
T ss_pred C-CcEEEEEEcCCCCcc
Confidence 8 999999999766543
|
| >1x5g_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 | Back alignment and structure |
|---|
Probab=99.34 E-value=2e-11 Score=98.93 Aligned_cols=99 Identities=26% Similarity=0.416 Sum_probs=81.3
Q ss_pred CcceeccCC--CCCCCCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCC-CeEEeEEeecCCcEEEeCCCc
Q psy7039 2 DHSVLIKNP--FDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTG-NWEKAVVVPAGETSCTVPGLI 78 (516)
Q Consensus 2 ~~~~~~~~~--~~~p~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~-~~~~~~~~~~~~~~~~i~~l~ 78 (516)
|..+.+++. .+.|++|.++++..++.++|.|+|.+|.. .++.|.+|.|+|+..+. .|.. .....++++|.+|+
T Consensus 4 S~~~~~~T~~~~~~P~~P~~l~~~~~~~~si~l~W~~p~~-~~~~i~~Y~v~~~~~~~~~~~~---~~~~~~~~~i~~L~ 79 (116)
T 1x5g_A 4 GSSGRVETQPEVQLPGPAPNLRAYAASPTSITVTWETPVS-GNGEIQNYKLYYMEKGTDKEQD---VDVSSHSYTINGLK 79 (116)
T ss_dssp CCCCCCSSCCCSSCCCCCSSCEEEEEETTEEEEECCCCSC-CSSCCSEEEEEEEETTCCCCCC---EEECSSEEEECSCC
T ss_pred ccCeEEEcCCCCCCCcCCCccEEEecCCCEEEEEEeCCCC-CCCcccEEEEEEEECCCCccEE---EecCCceEEEcCCC
Confidence 567778874 37899999999999999999999999863 44579999999998765 5532 23368899999999
Q ss_pred CCCeEEEEEEEecCCCCCCCCCCCcc
Q psy7039 79 EGETYQFQVRAVNAAGPGEASKPTAP 104 (516)
Q Consensus 79 ~~~~y~~~~~a~n~~g~~~~s~~~~~ 104 (516)
+++.|.|+++|.|..|.+.++.....
T Consensus 80 p~t~Y~~~V~A~n~~G~g~~S~~~~~ 105 (116)
T 1x5g_A 80 KYTEYSFRVVAYNKHGPGVSTPDVAV 105 (116)
T ss_dssp TTCEEEEEEEEECSSCCCCBCCCCCE
T ss_pred CCCEEEEEEEEEcCCCcCCCCCCEEE
Confidence 99999999999999998887655433
|
| >3d9a_H Heavy chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_H 1gpo_H 3ks0_H* 1dqd_H 1ndm_B 1nak_H 1dqq_B 1dqm_H 1dqj_B 1nby_B 1nbz_B 1xgu_B 1ndg_B 1xgt_B 1xgp_B 1xgq_B 1xgr_B 1s5i_H 1f8t_H 1f90_H ... | Back alignment and structure |
|---|
Probab=99.34 E-value=4.8e-12 Score=114.37 Aligned_cols=166 Identities=14% Similarity=0.107 Sum_probs=105.2
Q ss_pred ccccCCceEEEEEEEEccCCCC--Cceecccccc-c----------------------ceEEEEEe--cceeeEEEccCC
Q psy7039 236 NNVHEGKAYEYRVSAVNAAGTE--KPKISLDALI-G----------------------KRIKEFVT--STTASLNIKNSV 288 (516)
Q Consensus 236 ~~l~~g~~~~~~~~~~~~~g~p--~p~i~W~~~~-~----------------------~~~~~~~~--~~~~~l~i~~l~ 288 (516)
..+.+|+.+.|.|.+ .|.+ .+.+.|.+.. + .++.+... .....|.|.+++
T Consensus 10 ~~v~~G~~v~L~C~~---~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~ 86 (210)
T 3d9a_H 10 SLVKPSQTLSLTCSV---TGDSITSDYWSWIRKFPGNRLEYMGYVSYSGSTYYNPSLKSRISITRDTSKNQYYLDLNSVT 86 (210)
T ss_dssp SEECTTSCEEEEEEE---ESSCGGGSCEEEEEEETTTEEEEEEEECTTSCEEECGGGTTTEEEEEEGGGTEEEEEECSCC
T ss_pred EEecCCCcEEEEEEE---ecccCCCCcEEEEEeCCCCCcEEEEEEcCCCCeEECcccCceEEEEecCCCCEEEEEECCCC
Confidence 456789999999998 4543 4789996521 1 12222221 234589999999
Q ss_pred CCCceEEEEEEEecCCCcceeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEE
Q psy7039 289 RKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVL 368 (516)
Q Consensus 289 ~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~ 368 (516)
.+|+|.|+|.+.|.. .......+.|...+.. .|.... ......+.
T Consensus 87 ~~D~G~Y~C~~~~~~-~~~~~~~l~V~~~~~~--~P~v~~--------------------------------~~~~~~~~ 131 (210)
T 3d9a_H 87 TEDTATYYCANWDGD-YWGQGTLVTVSAAKTT--PPSVYP--------------------------------LAPGSAAQ 131 (210)
T ss_dssp GGGCEEEEEEETTSS-CBCCCEEEEECCCCCB--CCEEEE--------------------------------ECCTTSCC
T ss_pred cccCEEEEEEEecCc-ccccceEEEeccCCCC--CCEEEE--------------------------------ecCCcccc
Confidence 999999999999863 2222345666532211 110000 00011245
Q ss_pred cCCeEEEEEEEeee-cCC-ceEEEECCeecCCCCceEEEEcC---CeEEEEEcCceecCCceEEEEEEEcCCCceeEE
Q psy7039 369 AGEEFTITVPFSGR-PKP-TPIWTVNGDEVSPDGRIKFETSE---NQTIYRNKSAKRATDSGSYTIQLVNTVGSDSAS 441 (516)
Q Consensus 369 ~g~~~~l~C~~~g~-p~~-~i~W~~~~~~l~~~~~~~~~~~~---~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s 441 (516)
.|+.+.|.|.+.|. |.+ .+.|++++..+...........+ ..+.|.|..+.. ++ |.|+|.|.|..|.....
T Consensus 132 ~g~~v~L~C~~~g~~P~p~~v~W~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~-~~-g~Y~C~a~n~~~~~~~~ 207 (210)
T 3d9a_H 132 TNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTW-PS-ETVTCNVAHPASSTKVD 207 (210)
T ss_dssp CSSEEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEEETTEEEEEEEEEEEGGGT-TT-SCCEEEEEEGGGTEEEE
T ss_pred cCCcEEEEEEEeeEecCCcEEEEeeCCcccceEEcCCccCCCcEEEEEEEEEcHHHc-CC-CcEEEEEEeCCCCcccc
Confidence 78999999999987 878 99999988754211110011111 124689988887 77 99999999999876543
|
| >1wfn_A Sidekick 2; FN3, cell adhesion, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.1.2.1 | Back alignment and structure |
|---|
Probab=99.34 E-value=3.5e-12 Score=104.00 Aligned_cols=99 Identities=22% Similarity=0.363 Sum_probs=83.2
Q ss_pred CcceeccCCCCCCCCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCC-CeEEeEEeecCCcEEEeCCCcCC
Q psy7039 2 DHSVLIKNPFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTG-NWEKAVVVPAGETSCTVPGLIEG 80 (516)
Q Consensus 2 ~~~~~~~~~~~~p~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~-~~~~~~~~~~~~~~~~i~~l~~~ 80 (516)
|+.+.+++.++.|++|.+|++..+++++|.|+|.+|. +.++.|.+|+|+|+..+. .+..........++++|.+|+++
T Consensus 6 S~~~~~~T~~~~P~~P~~l~~~~~~~~sv~l~W~~p~-~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~ 84 (119)
T 1wfn_A 6 SGPQLVRTHEDVPGPVGHLSFSEILDTSLKVSWQEPG-EKNGILTGYRISWEEYNRTNTRVTHYLPNVTLEYRVTGLTAL 84 (119)
T ss_dssp SCCCSCCSSCCSCCCCSCCEEESCCSSEEEEECCCCT-TCCSCCCEEEEEEEESSCGGGCCCEEECSSCCEEEEESCCTT
T ss_pred CCCEEEECCCCCCCCCCceEEEECCCCEEEEEEcCCC-CCCCcEEEEEEEEEECCCCCceEEEEeCCCceEEEEcCCCCC
Confidence 6778899999999999999999999999999999986 444569999999998664 33233344567899999999999
Q ss_pred CeEEEEEEEecCCCCCCCCCC
Q psy7039 81 ETYQFQVRAVNAAGPGEASKP 101 (516)
Q Consensus 81 ~~y~~~~~a~n~~g~~~~s~~ 101 (516)
+.|.|+|+|.|..|.+.++..
T Consensus 85 t~Y~~~V~A~n~~G~g~~S~~ 105 (119)
T 1wfn_A 85 TTYTIEVAAMTSKGQGQVSAS 105 (119)
T ss_dssp CEEEEEEEEECSSCEEEEEEE
T ss_pred CEEEEEEEEEcCCccCCCCCC
Confidence 999999999999998876543
|
| >1tdq_A Tenascin-R; extracellular matrix, lecticans, tenascins, protein-protein interactions, C-type lectin domain; 2.60A {Rattus norvegicus} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 | Back alignment and structure |
|---|
Probab=99.34 E-value=1.7e-10 Score=109.35 Aligned_cols=172 Identities=12% Similarity=0.085 Sum_probs=123.9
Q ss_pred ecceeeEEEccCCCCCceEEEEEEEecCCCcceeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccc
Q psy7039 276 TSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPK 355 (516)
Q Consensus 276 ~~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~ 355 (516)
......+.|.+|.+...|.+++.|.|..|... ...+.+...|.+|.. +.+...+.+++.|+|.+|.. .+.+|.
T Consensus 64 ~~~~~~~~i~~L~p~t~Y~~~V~a~~~~g~s~-~~~~~~~t~p~~P~~-l~~~~~~~~sv~l~W~~p~~----~i~~Y~- 136 (283)
T 1tdq_A 64 QPPLSQYSVQALRPGSRYEVSISAVRGTNESD-ASSTQFTTEIDAPKN-LRVGSRTATSLDLEWDNSEA----EAQEYK- 136 (283)
T ss_dssp CTTCSEEEECSCCTTCEEEEEEEEEETTEECC-CEEEEEECCCCCCEE-EEEEEECSSCEEEEEECCSS----CCSEEE-
T ss_pred CCCCCEEEecCCCCCCEEEEEEEEECCCCCCC-CeeEEEECCCCCCCc-eEEEecCCCeEEEEecCCCC----CccEEE-
Confidence 45567889999999999999999999877653 344455555555533 78888899999999998862 355551
Q ss_pred cccccccccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEEEEcCC---eEEEEEcCceecCCceEEEEEEE
Q psy7039 356 ITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSEN---QTIYRNKSAKRATDSGSYTIQLV 432 (516)
Q Consensus 356 ~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~---~~~l~i~~~~~~~~~g~y~c~a~ 432 (516)
|.|...+. ........... ...+.|.+|.+ ...|.|++.|.
T Consensus 137 -------------------------------v~~~~~~~----~~~~~~~~~~~~~~~~~~~i~~L~p-~t~Y~~~V~A~ 180 (283)
T 1tdq_A 137 -------------------------------VVYSTLAG----EQYHEVLVPKGIGPTTKTTLTDLVP-GTEYGVGISAV 180 (283)
T ss_dssp -------------------------------EEEEETTC----CCCEEEEEECCSSSEEEEEECSCCT-TCEEEEEEEEE
T ss_pred -------------------------------EEEEeCCC----CcceEEECCCCCcccceEEEecCCC-CCEEEEEEEEE
Confidence 22222211 01112222233 57899999999 99999999999
Q ss_pred cCCCceeEEEEEEEecCCCCCCCCcccccccCCeEEEEeeCCCCCCCCCcceEEEEEEecCCCc
Q psy7039 433 NTVGSDSASCKVYVVDKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATGV 496 (516)
Q Consensus 433 n~~G~~s~s~~l~v~~~p~~P~~~l~~~~~~~~~~~l~W~~p~~~~~~~i~~Y~v~~~~~~~~~ 496 (516)
|..|.+. ...+.....|.+| .++.+..++.+++.|+|++|. +.+.+|.|+|+..+...
T Consensus 181 n~~g~s~-~~~~~~~t~~~~P-~~l~~~~~~~~sv~l~W~~p~----~~i~~Y~v~~~~~~~~~ 238 (283)
T 1tdq_A 181 MNSKQSI-PATMNARTELDSP-RDLMVTASSETSISLIWTKAS----GPIDHYRITFTPSSGIS 238 (283)
T ss_dssp ETTEECC-CEEEEEECCCCCC-EEEEEEEECSSCEEEEEECCC----SCCSEEEEEEECSSSCC
T ss_pred eCCCCCc-ceEEEecCCCCCC-CccEEeEecCCEEEEEEeCCC----CcccEEEEEEEcCCCCe
Confidence 9888643 3445566666677 788898889999999999863 66999999999876544
|
| >1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B | Back alignment and structure |
|---|
Probab=99.34 E-value=2.6e-12 Score=112.18 Aligned_cols=147 Identities=14% Similarity=0.092 Sum_probs=101.1
Q ss_pred cccCCceEEEEEEEEccCCCCCceecccccccce-------E--------EEEEecceeeEEEccCCCCCceEEEEEEEe
Q psy7039 237 NVHEGKAYEYRVSAVNAAGTEKPKISLDALIGKR-------I--------KEFVTSTTASLNIKNSVRKDSGIYKIEAKN 301 (516)
Q Consensus 237 ~l~~g~~~~~~~~~~~~~g~p~p~i~W~~~~~~~-------~--------~~~~~~~~~~l~i~~l~~~d~g~y~c~a~n 301 (516)
....|+.+.|.|.+ .+ +.+.+.|.+....- . ++.....++.|.|.+++.+|+|.|+|.+.|
T Consensus 6 ~~~~G~~VtL~c~~---~~-~~~~i~W~~~~~~i~~~~~~~~~~~~~~~~R~~~~~~~~sL~I~~v~~~DsG~Y~C~~~n 81 (171)
T 1ccz_A 6 YGVVYGNVTFHVPS---NV-PLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESPN 81 (171)
T ss_dssp EEETTCCEEECCCC---SS-CCSCEEEEETTEEEEEEETTEEEECGGGTTSEEECTTTCCEEECSCCGGGCEEEEEECTT
T ss_pred EEEcCCCEEEcCCC---CC-CcceEEEEeCCcEEEEEcCCCcccccccCCcEEEeCCCCeEEECCCChhhCceEEEEEeC
Confidence 35678999999876 33 78899997532210 0 112223567899999999999999999998
Q ss_pred cCCCcceeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEee
Q psy7039 302 DYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSG 381 (516)
Q Consensus 302 ~~g~~~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g 381 (516)
..| ...+.|.|..++..|.. .+ ... ...|.|.+.+
T Consensus 82 ~~~--~~~~~L~V~~~~~~p~i--------------~~----------------------------~~~-~~~L~C~~~~ 116 (171)
T 1ccz_A 82 ITD--TMKFFLYVLEMVSKPMI--------------YW----------------------------ECS-NATLTCEVLE 116 (171)
T ss_dssp CCS--CEEEEEEEECCCCCCEE--------------EE----------------------------ETT-TTEEEEECSS
T ss_pred CCC--cEEEEEEEECcCCCCEE--------------EE----------------------------ecC-CcEEEEEeCC
Confidence 877 56777888765433210 01 011 1268999999
Q ss_pred ecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEE
Q psy7039 382 RPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKV 444 (516)
Q Consensus 382 ~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l 444 (516)
.|.|.+.|++++..+...... .+.+.+ . .|.|.|+|.|.|..|..+.++.|
T Consensus 117 ~p~p~i~W~~~~~~l~~~~~~---------~l~~~~--~-~~~g~Y~C~a~N~~~~~~~~~~l 167 (171)
T 1ccz_A 117 GTDVELKLYQGKEHLRSLRQK---------TMSYQW--T-NLRAPFKCKAVNRVSQESEMEVV 167 (171)
T ss_dssp CSSCEEEEEETTEEEEEESSS---------EEEEEC--S-CCSSCEEEEEEETTEEEEEEECC
T ss_pred CCCcEEEEEECCEECcCCcce---------EEEEec--c-CCCceEEEEEEcccCcccceeEE
Confidence 999999999999876432221 233332 4 88999999999999987665544
|
| >2ha1_A Fibronectin; beta sandwich, protein-protein complex, rigid BODY docking, cell adhesion, structural protein; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.33 E-value=4.1e-11 Score=107.44 Aligned_cols=80 Identities=26% Similarity=0.496 Sum_probs=66.2
Q ss_pred CCCcceEEEeee--CCeeEEEecCCCCCCCCceeceEEEEEeCCC--CeEEeEEeecCCcEEEeCCCcCCCeEEEEEEEe
Q psy7039 15 GKPTDLEATDWD--KDHVDLQWTPPISDGGSPITGYVVEMKDKTG--NWEKAVVVPAGETSCTVPGLIEGETYQFQVRAV 90 (516)
Q Consensus 15 ~~p~~l~~~~~~--~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~--~~~~~~~~~~~~~~~~i~~l~~~~~y~~~~~a~ 90 (516)
.+|.+|.+..++ +++|.|+|.+| +++.|.+|.|+|+..+. .|... ......+++.|.+|++++.|.|+|.|.
T Consensus 1 s~P~~l~v~~v~~~~~si~l~W~~p---~~~~i~~Y~v~~~~~~~~~~~~~~-~~~~~~~~~~i~~L~p~t~Y~~~V~a~ 76 (201)
T 2ha1_A 1 SGPVEVFITETPSQPNSHPIQWNAP---QPSHISKYILRWRPKNSVGRWKEA-TIPGHLNSYTIKGLKPGVVYEGQLISI 76 (201)
T ss_dssp CCCCEEECCSCSCCSSCEEEEEECC---SSTTCCEEEEEEEETTCSSCCEEE-EECTTCCEEEECSCCTTEEEEEEEEEE
T ss_pred CCceeEEEEecCCCCCEEEEEEeCC---CCCCceEEEEEEEECCCCCceEEE-ecCCCccEEEecCCCCCCEEEEEEEEE
Confidence 378999999887 99999999997 34679999999997543 55544 344568899999999999999999999
Q ss_pred cCCCCCCC
Q psy7039 91 NAAGPGEA 98 (516)
Q Consensus 91 n~~g~~~~ 98 (516)
|..|.+.+
T Consensus 77 n~~G~~~~ 84 (201)
T 2ha1_A 77 QQYGHQEV 84 (201)
T ss_dssp CTTSCEEE
T ss_pred ecccccCc
Confidence 99887754
|
| >1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex (immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 | Back alignment and structure |
|---|
Probab=99.33 E-value=9.4e-13 Score=119.19 Aligned_cols=158 Identities=11% Similarity=0.013 Sum_probs=104.2
Q ss_pred ccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeC--Ceeec------------cCCc
Q psy7039 121 LNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSIN--GQVCQ------------IGGR 186 (516)
Q Consensus 121 ~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~--~~~~~------------~~~~ 186 (516)
+..+.+.+|+.+.|.|.+. +.|.+.+.|+++ +..+. ...|
T Consensus 6 p~~~~v~~G~~v~L~C~~~--------------------------~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r 59 (212)
T 1nfd_E 6 PSSASVTVGETVKITCSGD--------------------------QLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPER 59 (212)
T ss_dssp CSEEEEETTSCCCEEEEET--------------------------TGGGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTT
T ss_pred CCeEEEeCCCcEEEEEecC--------------------------CCCCCeEEEEEECCCCCcEEEEEeccccCCCcccc
Confidence 5668899999999999988 777778999874 22221 1356
Q ss_pred eEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCce-----EEEEEeec-----eeeee----ccccCCceEEEEEEEEc
Q psy7039 187 ADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTA-----TASAHVTG-----TEFTD----NNVHEGKAYEYRVSAVN 252 (516)
Q Consensus 187 ~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~-----~~~~~~~~-----~~~~~----~~l~~g~~~~~~~~~~~ 252 (516)
+.+...+....|.|.+++.+|+|.|.|.+.|..+.. ...+.+.. ..+.. ....+|..+.+.|.+
T Consensus 60 ~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~~~~~~g~~v~L~C~~-- 137 (212)
T 1nfd_E 60 FSGSTSGTTATLTISGAQPEDEAAYYCLSSYGDNNDLVFGSGTQLTVLRGPKSSPKVTVFPPSPEELRTNKATLVCLV-- 137 (212)
T ss_dssp EEEEEETTEEEEEETTCCGGGCSEEEEEEEETTTTEEEECCCEEEEEECCCCBCCEEECCCCCHHHHHTTEECCCEEE--
T ss_pred EEEEeeCCEEEEEECcCCcccCEEEEEEEEcccCcccccCCceEEEEccCCCCCCEEEeeCCchHhccCCceEEEEEE--
Confidence 666656667899999999999999999999622211 11122210 11111 123458899999998
Q ss_pred cCCC-CC-ceecccccccc---eEE---EEEe----cceeeEEEccCCCCCceEEEEEEEecCCCcc
Q psy7039 253 AAGT-EK-PKISLDALIGK---RIK---EFVT----STTASLNIKNSVRKDSGIYKIEAKNDYGIDM 307 (516)
Q Consensus 253 ~~g~-p~-p~i~W~~~~~~---~~~---~~~~----~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~ 307 (516)
.|. |+ |.+.|.+.... ... .... .....|.|.++..+|+|.|+|.|.|..+...
T Consensus 138 -~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~ 203 (212)
T 1nfd_E 138 -NDFYPGSATVTWKANGATINDGVKTTKPSKQGQNYMTSSYLSLTADQWKSHNRVSCQVTHEGETVE 203 (212)
T ss_dssp -EEEBSSCCEEEEEETTEEECSSCBCCCCBCSSSCEEEEEBCCEEHHHHHTCSCEEEEEECTTTTCC
T ss_pred -EeeECCccEEEEEECCeEcCCCeecCCceecCCCceEEEEEEEchhhcCCCCeEEEEEEeCCceEE
Confidence 454 44 79999652110 000 0000 0124588999999999999999999876643
|
| >2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.33 E-value=5e-12 Score=112.19 Aligned_cols=120 Identities=21% Similarity=0.272 Sum_probs=93.9
Q ss_pred CCcEEEeCCCcCCCeEEEEEEEecCCCCCCCCCCCcceEeccCCCCCccccCcccceEEecCCeEEEEEeeeeccccccC
Q psy7039 68 GETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKS 147 (516)
Q Consensus 68 ~~~~~~i~~l~~~~~y~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~ 147 (516)
....|.|.+++..|.|.|+|.+.|..|........+.+. .+|.+. ..+....+.+|+.+.|.|.+.
T Consensus 60 ~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~-----~~p~~~-~~~~~~~~~~g~~~~l~C~~~-------- 125 (192)
T 2iep_A 60 NGQLLTILSVEDSDDGIYCCTANNGVGGAVESCGALQVK-----MKPKIT-RPPINVKIIEGLKAVLPCTTM-------- 125 (192)
T ss_dssp GGTEEEESSCCGGGCEEEEEEEECSSSCCEEEEEEEEEE-----EEEEEE-ECCCCEEEETTSCEEECCEEE--------
T ss_pred CccEEEEcCCCcccCeEEEEEEEcCCCceeEeEEEEEEE-----eCCccc-cCCcceEEeCCCcEEEEEEEe--------
Confidence 345799999999999999999998776532221222222 245554 445567899999999999999
Q ss_pred ccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCce
Q psy7039 148 PLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTA 222 (516)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~ 222 (516)
+.|.+.+.|++++..+....++.+... ..|.|.+++.+|+|.|+|.+.|..|..
T Consensus 126 ------------------g~p~~~v~W~~~~~~~~~~~~~~~~~~---~~L~i~~~~~~d~G~Y~C~a~n~~g~~ 179 (192)
T 2iep_A 126 ------------------GNPKPSVSWIKGDSALRENSRIAVLES---GSLRIHNVQKEDAGQYRCVAKNSLGTA 179 (192)
T ss_dssp ------------------EESCCEEEEEETTEECCCCSSEEECTT---SCEEESSCCGGGCEEEEEEEEETTEEE
T ss_pred ------------------ccCCceEEEEeCCEEccCCCcEEEecC---CcEEEecCChhhCEEEEEEEEcCCCcE
Confidence 889999999999998887766655432 379999999999999999999988765
|
| >3f7q_A Integrin beta-4, GP150; hemidesmosome, cell adhesion, carcinoma, epidermolysis bullosa, alternative splicing, disease mutation, glycoprotein; HET: 1PE PG4; 1.75A {Homo sapiens} PDB: 3f7r_A 3f7p_C 1qg3_A | Back alignment and structure |
|---|
Probab=99.33 E-value=1.5e-11 Score=113.23 Aligned_cols=86 Identities=22% Similarity=0.302 Sum_probs=69.0
Q ss_pred CCCCCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCCCeEEeEEeecCCcEEEeCCCcCCCeEEEEEEEec
Q psy7039 12 DEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVVVPAGETSCTVPGLIEGETYQFQVRAVN 91 (516)
Q Consensus 12 ~~p~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~~~a~n 91 (516)
++|++|.+|++..++++++.|+|.+|. +.+.+|.|+|+..+.............+++.|.+|++++.|.|+|+|.|
T Consensus 4 ~p~~~P~~l~~~~~~~~si~l~W~~p~----g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n 79 (234)
T 3f7q_A 4 MDLGAPQNPNAKAAGSRKIHFNWLPPS----GKPMGYRVKYWIQGDSESEAHLLDSKVPSVELTNLYPYCDYEMKVCAYG 79 (234)
T ss_dssp -CCCCCEEEEEEECSSSCEEEEEECCS----SCCCEEEEEEEETTSCGGGCEEEEESSSEEEECSCCTTCEEEEEEEEEE
T ss_pred CCCCCCcceEEEEcCCCEEEEEEECCC----CccceEEEEEEECCCCccceEEEcCCccEEEECCCCCCCEEEEEEEEEe
Confidence 578999999999999999999999972 4689999999976541111122335788999999999999999999999
Q ss_pred CCCCCCCCCC
Q psy7039 92 AAGPGEASKP 101 (516)
Q Consensus 92 ~~g~~~~s~~ 101 (516)
..|.+..+..
T Consensus 80 ~~G~g~~s~~ 89 (234)
T 3f7q_A 80 AQGEGPYSSL 89 (234)
T ss_dssp TTEECCCCCC
T ss_pred CCCcCCCCCe
Confidence 9888776543
|
| >2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.33 E-value=1.9e-11 Score=99.36 Aligned_cols=88 Identities=30% Similarity=0.588 Sum_probs=78.3
Q ss_pred cccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEE
Q psy7039 362 IRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSAS 441 (516)
Q Consensus 362 ~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s 441 (516)
...+.+..|+.+.|.|.+.|.|.|.+.|++++..+. ..++.+........|.|.++.. .|+|.|+|.|.|..|..+..
T Consensus 31 ~~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~-~~~~~~~~~~~~~~L~i~~~~~-~D~G~Y~C~a~N~~G~~~~~ 108 (118)
T 2e7c_A 31 RQTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAPLD-TSRVHVRTSDFDTVFFVRQAAR-SDSGEYELSVQIENMKDTAT 108 (118)
T ss_dssp SSCEEEESSSCEEEEEEEEEESCCEEEEEETTEECC-CSSCEEEECSSEEEEEESSCCT-TTCEEEEEEEECSSCEECCE
T ss_pred CCCEEEECCCEEEEEEEEccCCCCEEEEEECCEECC-CCcEEEEECCCeEEEEECCCCh-hcCEEEEEEEEeCCCeEEEE
Confidence 456789999999999999999999999999999886 4566676667778899999999 99999999999999999999
Q ss_pred EEEEEecCCC
Q psy7039 442 CKVYVVDKPS 451 (516)
Q Consensus 442 ~~l~v~~~p~ 451 (516)
+.|.|..+|+
T Consensus 109 ~~l~V~~~P~ 118 (118)
T 2e7c_A 109 IRIRVVEKAG 118 (118)
T ss_dssp EEEEEECCCC
T ss_pred EEEEEEcCCC
Confidence 9999987663
|
| >2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 | Back alignment and structure |
|---|
Probab=99.33 E-value=1.4e-11 Score=99.57 Aligned_cols=89 Identities=24% Similarity=0.308 Sum_probs=77.9
Q ss_pred CCCccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEee
Q psy7039 112 LAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQT 191 (516)
Q Consensus 112 ~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~ 191 (516)
.+|.|. ..+..+.+.+|+.+.|.|.+. +.|.+.+.|++++..+....++.+..
T Consensus 6 ~pp~i~-~~~~~~~v~~G~~v~l~C~~~--------------------------g~p~p~i~W~k~~~~~~~~~~~~~~~ 58 (114)
T 2cqv_A 6 SGPQII-QFPEDQKVRAGESVELFGKVT--------------------------GTQPITCTWMKFRKQIQESEHMKVEN 58 (114)
T ss_dssp CCCEES-CCCCSEEEETTCCEEEEEEEE--------------------------SSSSCEEEEEESSSBCCCSSSEEEEE
T ss_pred CCCEEE-eCCCCeEEeCCCeEEEEEEEE--------------------------cCCCCEEEEEECCEECcCCCCEEEEE
Confidence 467676 677789999999999999999 99999999999999998888888887
Q ss_pred cCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEE
Q psy7039 192 TKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAH 227 (516)
Q Consensus 192 ~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~ 227 (516)
......|.|.+++.+|+|.|+|.+.|..|.......
T Consensus 59 ~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~ 94 (114)
T 2cqv_A 59 SENGSKLTILAARQEHCGCYTLLVENKLGSRQAQVN 94 (114)
T ss_dssp CSSEEEEEETTCCTTTCEEEEEEEECSSCEEECCEE
T ss_pred cCCEEEEEECCCChhcCEEEEEEEEECCCcEEEEEE
Confidence 777889999999999999999999999887655443
|
| >3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.33 E-value=1.9e-11 Score=96.65 Aligned_cols=87 Identities=20% Similarity=0.319 Sum_probs=79.3
Q ss_pred cccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEE
Q psy7039 362 IRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSAS 441 (516)
Q Consensus 362 ~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s 441 (516)
+....+..|+.+.|.|.+.|.|.+.+.|++++..+....++.+........|.|.++.. .|.|.|+|.|.|..|..+..
T Consensus 15 ~~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~~~~L~i~~~~~-~D~G~Y~C~a~N~~G~~~~~ 93 (103)
T 3qp3_A 15 MRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNTSGVLTLEILDCHT-DDSGTYRAVCTNYKGEASDY 93 (103)
T ss_dssp CCCEEEETTCCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEEETTEEEEEECSCCG-GGCEEEEEEEEETTEEEEEE
T ss_pred CcceEEeCCCeEEEEEEEEecCCCEEEEEECCEECCCCCCEEEEECCCEEEEEEcCCCc-ccCEEEEEEEEeCCCcEEEE
Confidence 45678999999999999999999999999999999888888888777778999999999 99999999999999999999
Q ss_pred EEEEEecC
Q psy7039 442 CKVYVVDK 449 (516)
Q Consensus 442 ~~l~v~~~ 449 (516)
+.|.|...
T Consensus 94 ~~l~V~~~ 101 (103)
T 3qp3_A 94 ATLDVTGG 101 (103)
T ss_dssp EEEEEECC
T ss_pred EEEEEECC
Confidence 99988754
|
| >3m8o_H Immunoglobulin A1 heavy chain; immunoglobulin fold, immune system; 1.55A {Homo sapiens} PDB: 3qnx_B 3qny_B | Back alignment and structure |
|---|
Probab=99.33 E-value=2.9e-10 Score=103.46 Aligned_cols=120 Identities=17% Similarity=0.164 Sum_probs=81.3
Q ss_pred ceeeEEEccCCCCCceEEEEEEEecC--CCcceeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccc
Q psy7039 278 TTASLNIKNSVRKDSGIYKIEAKNDY--GIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPK 355 (516)
Q Consensus 278 ~~~~l~i~~l~~~d~g~y~c~a~n~~--g~~~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~ 355 (516)
....|.|.+++.+|+|.|.|.+.+.. ........+.|...+..+.. +...
T Consensus 79 ~~~sL~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~p~-v~~~--------------------------- 130 (221)
T 3m8o_H 79 NTAFLQMNSLKSDDTAMYYCVIRGDVYNRQWGQGTLVTVSSASPTSPK-VFPL--------------------------- 130 (221)
T ss_dssp TEEEEEECSCCGGGCEEEEEEEESCTTCCCBBCCEEEEECSCCCBCCE-EEEE---------------------------
T ss_pred CEEEEEECCCCHHHCEEEEEEEECCChhheECCCEEEEEecCCCCCCe-EEEe---------------------------
Confidence 45689999999999999999999864 22233456666532211100 0000
Q ss_pred cccccccccEEEEcCCeEEEEEEEee-ecC-C-ceEEEECCeecC----------CCCceEEEEcCCeEEEEEcCceecC
Q psy7039 356 ITSDLSIRDMTVLAGEEFTITVPFSG-RPK-P-TPIWTVNGDEVS----------PDGRIKFETSENQTIYRNKSAKRAT 422 (516)
Q Consensus 356 ~~~~~~~~~~~v~~g~~~~l~C~~~g-~p~-~-~i~W~~~~~~l~----------~~~~~~~~~~~~~~~l~i~~~~~~~ 422 (516)
.+.. . ..|+.+.|.|.+.+ .|. + .+.|++++..+. .+..+... +.|.|..... .
T Consensus 131 -----~~~~-~-~~g~~v~L~C~~~~~~P~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~-----s~L~i~~~~~-~ 197 (221)
T 3m8o_H 131 -----SLCS-T-QPDGNVVIACLVQGFFPQEPLSVTWSESGQGVTARNFPPSQDASGDLYTTS-----SQLTLPATQC-L 197 (221)
T ss_dssp -----ECCS-C-CCTTEEEEEEEEEEEBSSCSEEEEESCCSTTCEEEECCCEECSSSSCEEEE-----EEEEEEGGGS-C
T ss_pred -----cCcc-c-ccCCCEEEEEEEEeeECCCCEEEEEEECCEECceEEcCceeeCCCCcEEEE-----EEEEECHHHc-C
Confidence 0011 1 57899999999998 665 3 899999887652 23333332 3689999988 8
Q ss_pred CceEEEEEEEcCCCce
Q psy7039 423 DSGSYTIQLVNTVGSD 438 (516)
Q Consensus 423 ~~g~y~c~a~n~~G~~ 438 (516)
|.|.|+|.|.|..+..
T Consensus 198 d~g~ytC~v~~~~~~~ 213 (221)
T 3m8o_H 198 AGKSVTCHVKHYTNPS 213 (221)
T ss_dssp TTCEEEEEEEETTSCC
T ss_pred CCCeEEEEEEECCCCc
Confidence 9999999999998653
|
| >2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.33 E-value=2.1e-11 Score=108.56 Aligned_cols=116 Identities=15% Similarity=0.123 Sum_probs=90.9
Q ss_pred CcEEEeCCCcCCCeEEEEEEEecCCCCCCCCCCCcceEeccCCCCCccccCcccceEEecCCeEEEEEeeeeccccccCc
Q psy7039 69 ETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSP 148 (516)
Q Consensus 69 ~~~~~i~~l~~~~~y~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~ 148 (516)
...|.|.+++..|.|.|+|.|.|..|..... ...+.+. .+|.+. ..+....+.+|+.+.|.|.+.
T Consensus 67 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~--~~~l~V~---~~p~~~-~~~~~~~~~~g~~~~l~C~~~--------- 131 (195)
T 2c5d_C 67 VSQLRITSLQLSDTGQYQCLVFLGHQTFVSQ--PGYVGLE---GLPYFL-EEPEDRTVAANTPFNLSCQAQ--------- 131 (195)
T ss_dssp EEEEEESSCCSTTCEEEEEEEEETTEEEECC--CEEEEEC---CSCEEE-ECCCCEEECTTCCEEEEEEEE---------
T ss_pred ccEEEEEeccccCCcEEEEEEEeCCCceecc--cEEEEEe---cCCeEE-cCCCcEEEcCCCEEEEEeECC---------
Confidence 3579999999999999999999976643221 2223332 356665 455668899999999999999
Q ss_pred cccccccccCccceeecCcCce-eeEEeeCCeeeccCCceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCceE
Q psy7039 149 LRALGVRANSTKGWVKLSEPFL-NHGWSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTAT 223 (516)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~p~~-~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~ 223 (516)
+.|.+ .+.|++++..+...... .....|.|.+++ |+|.|+|.+.|..|...
T Consensus 132 -----------------g~p~p~~v~W~~~~~~~~~~~~~-----~~~~~L~i~~~~--d~G~Y~C~a~N~~g~~~ 183 (195)
T 2c5d_C 132 -----------------GPPEPVDLLWLQDAVPLATAPGH-----GPQRSLHVPGLN--KTSSFSCEAHNAKGVTT 183 (195)
T ss_dssp -----------------CSSCCCEEEEEESSCBSSSSTTS-----SCCEEEEECCCS--SCEEEEEEEEETTEEEE
T ss_pred -----------------CCCCCCEEEEEECCEeccCCCCc-----CCCCeEEEcccc--cCceEEEEEEcCCCceE
Confidence 99999 99999999888654432 356789999998 78999999999888764
|
| >1pz5_B Heavy chain of FAB (SYA/J6); antibody-antigen structure, peptide-carbohydrate mimicry, VA design, immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1m7d_B* 1m71_B* 1m7i_B* 1r24_B 1uz6_F 1uz8_B* 1clz_H* | Back alignment and structure |
|---|
Probab=99.33 E-value=1.8e-11 Score=111.38 Aligned_cols=161 Identities=13% Similarity=0.099 Sum_probs=104.8
Q ss_pred cccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcC--ceeeEEeeCC--ee---ec----------
Q psy7039 120 TLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEP--FLNHGWSING--QV---CQ---------- 182 (516)
Q Consensus 120 ~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p--~~~i~W~~~~--~~---~~---------- 182 (516)
.+..+.+.+|+.+.|.|.+. +.+ .+.+.|++++ .. +.
T Consensus 6 ~p~~~~~~~G~~v~L~C~~~--------------------------~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~ 59 (220)
T 1pz5_B 6 ESGGGLVQPGGSMKLSCVAS--------------------------GFTFSNYWMEWVRQSPEKGLEWVAEIRLKSNNYA 59 (220)
T ss_dssp EECCEEECTTCCEEEEEEEE--------------------------SSCGGGSEEEEEEEETTTEEEEEEEECCGGGTTC
T ss_pred ccCCEEEcCCCeEEEEEEEc--------------------------CCccCCccEEEEEeCCCCCcEEEEEEEcCCCccc
Confidence 34567899999999999998 554 5677887742 11 10
Q ss_pred ------cCCceEEeec--CCeeEEEeccCCCCCCeeEEEEEEcCCCce-----EEEEEeec-----eee-e---eccccC
Q psy7039 183 ------IGGRADVQTT--KSETVLDIPFCSRSDTGHYSLTLENNLGTA-----TASAHVTG-----TEF-T---DNNVHE 240 (516)
Q Consensus 183 ------~~~~~~~~~~--~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~-----~~~~~~~~-----~~~-~---~~~l~~ 240 (516)
...|+.+... ....+|.|.+++.+|+|.|.|.+.+..+.. ...+.+.. ..+ . ...+.+
T Consensus 60 ~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~ 139 (220)
T 1pz5_B 60 THYAESVKGRFTISRDDSKSSVYLQMNNLRAEDTGIYYCTRGGAVGAMDYWGQGTSVTVSSATTTAPSVYPLVPGCSDTS 139 (220)
T ss_dssp EEECGGGTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEECTTSSEEEECCCEEEEECSSCCBCCEEEEECCCSCCSC
T ss_pred cccCcccCCcEEEEEeCCCCeEEEEEccCCHHHCEEEEEEEecCCcccceECCCEEEEEccCCCCCCeEEEcccccccCC
Confidence 0246655432 345699999999999999999999865321 11222221 111 1 123567
Q ss_pred CceEEEEEEEEccCCC-CCc-eecccccccc----eEE-EE---EecceeeEEEccCCCCCceEEEEEEEecCCCcceeE
Q psy7039 241 GKAYEYRVSAVNAAGT-EKP-KISLDALIGK----RIK-EF---VTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADI 310 (516)
Q Consensus 241 g~~~~~~~~~~~~~g~-p~p-~i~W~~~~~~----~~~-~~---~~~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~~~ 310 (516)
|..+.+.|.+ .|. |.| .+.|.+.... ... .. .......|.|.....++ |.|+|.|.|..|.....+
T Consensus 140 g~~v~L~C~~---~g~~P~p~~v~W~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~~~ 215 (220)
T 1pz5_B 140 GSSVTLGCLV---KGYFPEPVTVKWNYGALSSGVRTVSSVLQSGFYSLSSLVTVPSSTWPS-QTVICNVAHPASKVDLIK 215 (220)
T ss_dssp SSSEEEEEEE---EEEBSSCCEEEEGGGTCCTTEEECCCEEETTEEEEEEEEEECGGGTTT-SCCEEEEEEGGGTEEEEE
T ss_pred CCcEEEEEEE---EEEeCCCeEEEEecCCcccceEEcCCcccCCeEEEEEEEEEcchhcCC-ceEEEEEEECCccEeeee
Confidence 9999999998 555 888 9999763321 000 00 01124568888888766 999999999998655443
|
| >1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.33 E-value=2.5e-11 Score=106.67 Aligned_cols=114 Identities=11% Similarity=0.105 Sum_probs=88.4
Q ss_pred CcEEEeCCCcCCCeEEEEEEEecCCCCCCCCCCCcceEeccCCCCCccccCcccceEEecCCeEEEEEeeeeccccccCc
Q psy7039 69 ETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSP 148 (516)
Q Consensus 69 ~~~~~i~~l~~~~~y~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~ 148 (516)
...|.|.+++..|.|.|+|.|.|..|..... ...+.+. .+|.+. ..+....+.+|+.+.|.|.+.
T Consensus 59 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~--~~~l~V~---~~p~~~-~~~~~~~~~~g~~~~l~C~~~--------- 123 (182)
T 1rhf_A 59 IGFLSLKSVERSDAGRYWCQVEDGGETEISQ--PVWLTVE---GVPFFT-VEPKDLAVPPNAPFQLSCEAV--------- 123 (182)
T ss_dssp EEEEEESSCCGGGCEEEEEEESSCTTCEECC--CEEEEEE---CSCEEE-ECCCCEEECTTCCEEEEEEEE---------
T ss_pred eEEEEEeecCcccCeEEEEEEEcCCCcEEEE--EEEEEEe---cCCeEE-ecCcceEecCCCEEEEEeEec---------
Confidence 3679999999999999999999875532222 2223322 356666 455668899999999999999
Q ss_pred cccccccccCccceeecCcCce-eeEEeeCCeeeccCCceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCceE
Q psy7039 149 LRALGVRANSTKGWVKLSEPFL-NHGWSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTAT 223 (516)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~p~~-~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~ 223 (516)
+.|.+ .+.|++++..+..... ....|.|.++ +|+|.|+|.+.|..|...
T Consensus 124 -----------------g~p~p~~v~W~~~~~~~~~~~~-------~~~~L~i~~~--~d~G~Y~C~a~N~~g~~~ 173 (182)
T 1rhf_A 124 -----------------GPPEPVTIVWWRGTTKIGGPAP-------SPSVLNVTGV--TQSTMFSCEAHNLKGLAS 173 (182)
T ss_dssp -----------------CSSSCCEEEEEETTEECSCSEE-------SSEEEEECCC--SSCEEEEEEEEETTEEEE
T ss_pred -----------------CCCCCCEEEEEcCCeECCCCCC-------CceEEEEecc--ccCeEEEEEEECCCCCcc
Confidence 99998 9999999988754321 4568999998 589999999999888664
|
| >2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid factor IGG1-FC, immunoglobulin C region, membrane, glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 | Back alignment and structure |
|---|
Probab=99.33 E-value=2.8e-12 Score=117.88 Aligned_cols=167 Identities=14% Similarity=0.120 Sum_probs=107.1
Q ss_pred eccccCCceEEEEEEEEccCCCC-Cc-eecccccc-------------------cceEEEEEecceeeEEEccCCCCCce
Q psy7039 235 DNNVHEGKAYEYRVSAVNAAGTE-KP-KISLDALI-------------------GKRIKEFVTSTTASLNIKNSVRKDSG 293 (516)
Q Consensus 235 ~~~l~~g~~~~~~~~~~~~~g~p-~p-~i~W~~~~-------------------~~~~~~~~~~~~~~l~i~~l~~~d~g 293 (516)
...+.+|+.+.+.|.+ .|.+ .+ .+.|.+.. ..++..........|.|.+++.+|+|
T Consensus 28 ~~~v~~G~~v~L~C~~---~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G 104 (234)
T 2j6e_L 28 SASGTPGQRVTISCSG---SSSNIGSNYVYWYQQLPGTAPKLLIYRNNQRPSGVPDRFSGSKSGTSASLAISGLRSEDEA 104 (234)
T ss_dssp CCCBCTTCEEEEEEEC---CTTTTTTSCCEEEEECSSSCCEEEEBTTTBCCSSSCTTEEEEEETTEEEEEEESCCSTTCS
T ss_pred cEEeeCCCcEEEEEEe---cCCCCCCCeEEEEEecCCCCcEEEEECccccCCCccccEEEEecCCeEEEEECCCCHHHCE
Confidence 3457789999999998 5543 34 68995421 12333333455679999999999999
Q ss_pred EEEEEEEecCCC---cceeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcC
Q psy7039 294 IYKIEAKNDYGI---DMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAG 370 (516)
Q Consensus 294 ~y~c~a~n~~g~---~~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g 370 (516)
.|+|.|.|..+. ......+.|...+..+.. +.+. ........|
T Consensus 105 ~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~p~-v~~~---------------------------------~~~~~~~~g 150 (234)
T 2j6e_L 105 DYYCATWDDSLSAVIFGGGTKLTVLGQPKAAPS-VTLF---------------------------------PPSSEELQA 150 (234)
T ss_dssp EEEEEEEETTTTEEEECCCBCCCBCCCCCCCCC-CCEE---------------------------------CCCHHHHTT
T ss_pred EEEEEEEcCCcceeEecCCEEEEEecCCCCCCc-cccc---------------------------------CCChhHhcC
Confidence 999999998762 222344555332211110 0000 011112357
Q ss_pred CeEEEEEEEeeecCC--ceEEEECCeecCCCCceE-EEE-cC----CeEEEEEcCceecCCceEEEEEEEcCCCcee
Q psy7039 371 EEFTITVPFSGRPKP--TPIWTVNGDEVSPDGRIK-FET-SE----NQTIYRNKSAKRATDSGSYTIQLVNTVGSDS 439 (516)
Q Consensus 371 ~~~~l~C~~~g~p~~--~i~W~~~~~~l~~~~~~~-~~~-~~----~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s 439 (516)
+.+.|.|.+.|.+++ .+.|++++..+..+.... ... .. ..+.|.|..+.. .|.|.|+|.|.|..+...
T Consensus 151 ~~v~L~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~-~d~G~Y~C~a~n~~~~~~ 226 (234)
T 2j6e_L 151 NKATLVCLISDFFPGAVTVAWKADGAPVKAGVETTKPSKQSNNKYAASSYLSLTPEQW-KSHRSYSCQVTHEGSTVE 226 (234)
T ss_dssp SCCCEEECCCBCSSCCCEEEEEETTEECCSSEEECCCCCCTTSCCBCCEEECCCGGGT-TTSCCEEEEEEBTTBCCC
T ss_pred CceEEEEEEEEEcCCceEEEEEECCEECCCCccccCceECCCCCEEEEEEEEECHHHc-CCCCeEEEEEEeCCCceE
Confidence 899999999986443 899999998875431100 000 11 225789999999 999999999999987643
|
| >3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 3tnm_L 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A ... | Back alignment and structure |
|---|
Probab=99.32 E-value=5.4e-12 Score=114.04 Aligned_cols=156 Identities=10% Similarity=0.041 Sum_probs=101.9
Q ss_pred ceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeC--Ceeec------------cCCceE
Q psy7039 123 DVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSIN--GQVCQ------------IGGRAD 188 (516)
Q Consensus 123 ~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~--~~~~~------------~~~~~~ 188 (516)
.+.+.+|+.+.|.|.+. +.+.+.|+++ +.... ...|+.
T Consensus 9 ~~~v~~G~~v~L~C~~~----------------------------~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~ 60 (211)
T 3tv3_L 9 SASGSPGQSITISCTGT----------------------------SNNFVSWYQQHAGKAPKLVIYDVNKRPSGVPDRFS 60 (211)
T ss_dssp EEEECTTCEEEEEEECC----------------------------CSSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEE
T ss_pred eEEEcCCCCEEEEEEEC----------------------------CCCeEEEEEECCCCCCEEEEEEecccCCCCcCcEE
Confidence 68899999999999874 5567777773 22111 235676
Q ss_pred EeecCCeeEEEeccCCCCCCeeEEEEEEcCCCc--eEE--EEEeec-----eeee----eccccCCceEEEEEEEEccCC
Q psy7039 189 VQTTKSETVLDIPFCSRSDTGHYSLTLENNLGT--ATA--SAHVTG-----TEFT----DNNVHEGKAYEYRVSAVNAAG 255 (516)
Q Consensus 189 ~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~--~~~--~~~~~~-----~~~~----~~~l~~g~~~~~~~~~~~~~g 255 (516)
+.......+|.|.+++.+|+|.|.|.+.+..+. ... .+.+.. ..+. ...+..|..+.+.|.+ .|
T Consensus 61 ~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~l~C~~---~g 137 (211)
T 3tv3_L 61 GSKSGNTASLTVSGLQTDDEAVYYCGSLVGNWDVIFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLI---SD 137 (211)
T ss_dssp EEEETTEEEEEEESCCGGGCEEEEEEEEETTTEEEECCCEEEEECCSCCBCCEEEEECCCHHHHHTTCEEEEEEE---EE
T ss_pred EEccCCEEEEEECCCChhHCEEEEEEEecCCCceeECCCceEEEeCCCCcCCeeEecCCchhhhcCCCeEEEEEe---ee
Confidence 666667789999999999999999999997762 111 222221 1111 1112258999999998 45
Q ss_pred C--CCceecccccccce---EE---EEEe-----cceeeEEEccCCCCCceEEEEEEEecCCCccee
Q psy7039 256 T--EKPKISLDALIGKR---IK---EFVT-----STTASLNIKNSVRKDSGIYKIEAKNDYGIDMAD 309 (516)
Q Consensus 256 ~--p~p~i~W~~~~~~~---~~---~~~~-----~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~~ 309 (516)
. +.+.+.|.+..... .. .... .....|.|..+..+|.|.|+|.|.|..+....+
T Consensus 138 ~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~Y~C~v~~~~~~~~~~ 204 (211)
T 3tv3_L 138 FYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKT 204 (211)
T ss_dssp EBSSCCEEEEEETTEEECTTEEECCCEECTTSSEEEEEEEEECHHHHHHSSCEEEEEEETTEEEEEE
T ss_pred ecCCCeEEEEEECCeecCCCcccCCceECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEECCCCEEee
Confidence 3 35789996521100 00 0000 112468888888889999999999987654433
|
| >2edx_A Protein tyrosine phosphatase, receptor type, F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.32 E-value=1.8e-11 Score=102.00 Aligned_cols=101 Identities=23% Similarity=0.390 Sum_probs=82.5
Q ss_pred CcceeccCCCCCCC-CCcceEEEeeeCCeeEEEecCCC-CCCCCceeceEEEEEeCCC-C--eEEeEEeecCCcEEEeCC
Q psy7039 2 DHSVLIKNPFDEPG-KPTDLEATDWDKDHVDLQWTPPI-SDGGSPITGYVVEMKDKTG-N--WEKAVVVPAGETSCTVPG 76 (516)
Q Consensus 2 ~~~~~~~~~~~~p~-~p~~l~~~~~~~~~v~l~W~~p~-~~~~~~i~~Y~v~~~~~~~-~--~~~~~~~~~~~~~~~i~~ 76 (516)
|+.+.++++++.|. +|.++++..++.+++.|+|.+|. .+.++.|.+|.|+|+..+. . +..........++++|.+
T Consensus 6 S~~~~~~T~~~~P~~~P~~l~~~~~~~~sv~l~W~~p~~~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 85 (134)
T 2edx_A 6 SGTIEARTAQSTPSAPPQKVMCVSMGSTTVRVSWVPPPADSRNGVITQYSVAYEAVDGEDRGRHVVDGISREHSSWDLVG 85 (134)
T ss_dssp CCCCCCSSCCSCCSSCSEEEEEECSSSSEEEEEEECCCSTTCSSCEEEEEEEEEESSSSCCCCEEECCCBTTCSEEEEES
T ss_pred cCCEEEEeCCCCCCCCCcccEEEeCCCCEEEEEecCCCccCCCCceeEEEEEEEECCCCCcccEEEEeeCCCccEEEeCC
Confidence 67788999999998 89999999999999999999983 2445579999999988655 2 333333346789999999
Q ss_pred CcCCCeEEEEEEEecCCCCCCCCCCC
Q psy7039 77 LIEGETYQFQVRAVNAAGPGEASKPT 102 (516)
Q Consensus 77 l~~~~~y~~~~~a~n~~g~~~~s~~~ 102 (516)
|++++.|.|+|+|.|..|.+..+...
T Consensus 86 L~p~t~Y~~~V~A~n~~G~g~~S~~~ 111 (134)
T 2edx_A 86 LEKWTEYRVWVRAHTDVGPGPESSPV 111 (134)
T ss_dssp CCTTCEEEEEEEEEETTBCCCCCCCE
T ss_pred CCCCCEEEEEEEEEcCCCcCCCCCCE
Confidence 99999999999999999988776543
|
| >1uem_A KIAA1568 protein; immunoglobulin-like beta-sandwich fold, fibronectin type III, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1 | Back alignment and structure |
|---|
Probab=99.32 E-value=1.2e-11 Score=100.45 Aligned_cols=101 Identities=30% Similarity=0.510 Sum_probs=84.4
Q ss_pred eccCCCCCCCCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCC-C-CeEEeEEeecCCcEEEeCCCcCCCeE
Q psy7039 6 LIKNPFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKT-G-NWEKAVVVPAGETSCTVPGLIEGETY 83 (516)
Q Consensus 6 ~~~~~~~~p~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~-~-~~~~~~~~~~~~~~~~i~~l~~~~~y 83 (516)
...++.++|++|.+|++..++.++|.|+|.+|. +++.+|.+|+|+|+..+ . .|..+.. ....+.++|.+|++++.|
T Consensus 8 ~~~~~~~~P~~P~~~~~~~~~~~sv~l~W~~p~-~~~~~i~~Y~v~~~~~~~~~~~~~~~~-~~~~~~~~i~~L~p~t~Y 85 (117)
T 1uem_A 8 KNYDLSDLPGPPSKPQVTDVTKNSVTLSWQPGT-PGTLPASAYIIEAFSQSVSNSWQTVAN-HVKTTLYTVRGLRPNTIY 85 (117)
T ss_dssp SCCCSCCSCBCCCCCEEEEECSSCEEEECCCCB-CSSSCCCEEEEEEEETTTEEEEEEEEE-EECSSEEEECSCCTTCEE
T ss_pred ccCCCCCCccCCCCCEEEEecCCEEEEEEeCCC-CCCcCceEEEEEEEECCCCCceeEccc-ccCcCEEEECCCCCCCEE
Confidence 345678899999999999999999999999986 77788999999998864 3 6766543 346889999999999999
Q ss_pred EEEEEEecCCCCCCCCCCCcceEec
Q psy7039 84 QFQVRAVNAAGPGEASKPTAPIVAK 108 (516)
Q Consensus 84 ~~~~~a~n~~g~~~~s~~~~~~~~~ 108 (516)
.|+|+|.|..|.+.++.....+...
T Consensus 86 ~frV~A~n~~G~s~~S~~~~~v~t~ 110 (117)
T 1uem_A 86 LFMVRAINPQGLSDPSPMSDPVRTQ 110 (117)
T ss_dssp EEEEEEEETTEEEEECCCCCCEECC
T ss_pred EEEEEEECCCccCCCcCCCccEEcc
Confidence 9999999999988877766645543
|
| >1wf5_A Sidekick 2 protein; FNIII domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 | Back alignment and structure |
|---|
Probab=99.32 E-value=8.9e-12 Score=101.88 Aligned_cols=96 Identities=33% Similarity=0.590 Sum_probs=81.5
Q ss_pred CCCCCCCCcce--EEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCCCeEEe-EEeecCCcEEEeCCCcCCCeEEEE
Q psy7039 10 PFDEPGKPTDL--EATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKA-VVVPAGETSCTVPGLIEGETYQFQ 86 (516)
Q Consensus 10 ~~~~p~~p~~l--~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~~~~~~-~~~~~~~~~~~i~~l~~~~~y~~~ 86 (516)
..++|++|.++ .+..++.+++.|+|.+| .+++++|.+|.|+++..++.|..+ .......++++|.+|.+++.|.|+
T Consensus 14 v~~~P~~P~~~~~~~~~~~~~sv~l~W~~p-~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~v~~L~p~t~Y~fr 92 (121)
T 1wf5_A 14 VRQLPHAPEHPVATLSTVERRAINLTWTKP-FDGNSPLIRYILEMSENNAPWTVLLASVDPKATSVTVKGLVPARSYQFR 92 (121)
T ss_dssp CCCCCCCCSSCEEEECSSSTTEEEEECCCC-CCCSSCEEEEEEEEECTTCCCEEEESSCCTTCCEEEEESCCTTCEEEEE
T ss_pred EeeCCccCCCcceeeEeccCCEEEEEEcCC-CCCCCcceEEEEEEEcCCCCceEeEcccCCCccEEEECCcCCCCEEEEE
Confidence 34679999999 88888999999999998 577789999999999877788876 345567889999999999999999
Q ss_pred EEEecCCCCCCCCCCCcceE
Q psy7039 87 VRAVNAAGPGEASKPTAPIV 106 (516)
Q Consensus 87 ~~a~n~~g~~~~s~~~~~~~ 106 (516)
|+|.|..|.+.++.....+.
T Consensus 93 V~A~n~~G~s~~S~~~~~~~ 112 (121)
T 1wf5_A 93 LCAVNDVGKGQFSKDTERVS 112 (121)
T ss_dssp EEEEESSCEEEECCCCSCEE
T ss_pred EEEEcCCccCCCcCCcceeE
Confidence 99999999988776654343
|
| >2gki_A Nuclease; anti-DNA antibody, catalytic antibody, immune system; 2.88A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.32 E-value=2.6e-11 Score=115.61 Aligned_cols=154 Identities=16% Similarity=0.157 Sum_probs=103.6
Q ss_pred ccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcC--ceeeEEeeCC--eee---------------
Q psy7039 121 LNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEP--FLNHGWSING--QVC--------------- 181 (516)
Q Consensus 121 ~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p--~~~i~W~~~~--~~~--------------- 181 (516)
+..+.+.+|+++.|.|.+. +.+ .+.+.|++.. ..+
T Consensus 29 p~~~~v~~G~~v~L~C~~~--------------------------~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~ 82 (291)
T 2gki_A 29 SGPELVKPGASVKMSCKAS--------------------------GYTFTSYVMHWVKQKPGQGLEWIGYINPYNDGTKY 82 (291)
T ss_dssp CCCEEECTTCCEEEEEEEE--------------------------SSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEE
T ss_pred CCcEEecCCCCEEEEEecc--------------------------CCcccccEEEEEEECCCCCcEEEEEEecCCCcccc
Confidence 3468899999999999998 554 4677887732 111
Q ss_pred --ccCCceEEee--cCCeeEEEeccCCCCCCeeEEEEEEcCC-Cce------EEEEEeec-----------------eee
Q psy7039 182 --QIGGRADVQT--TKSETVLDIPFCSRSDTGHYSLTLENNL-GTA------TASAHVTG-----------------TEF 233 (516)
Q Consensus 182 --~~~~~~~~~~--~~~~~~l~i~~~~~~d~g~Y~c~~~~~~-g~~------~~~~~~~~-----------------~~~ 233 (516)
....|+.+.. .....+|.|.+++.+|+|.|.|.+.+.. |.. ...+.+.. ..+
T Consensus 83 ~~~~~~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~~~~~g~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~v 162 (291)
T 2gki_A 83 NEKFKGKATLTSDKSSSTAYMELSSLTSEDSAVYYCARGAYKRGYAMDYWGQGTSVTVSSRGGGGSGGGGSGGGGSDLVM 162 (291)
T ss_dssp CGGGBTTBCEEEEGGGTEEEEEECSCCGGGCEEEEEEEECGGGTTCEEEECCCEEEEECC----------------CCCE
T ss_pred CcccCCCEEEEEeCCCCEEEEEECcCCHHHCEEEEEEEeccccccccceeCCCcEEEEecCCccccccccCCCCCccceE
Confidence 0124555443 2346789999999999999999999864 111 11222222 001
Q ss_pred ----eeccccCCceEEEEEEEEccCCCCCc------eecccccc-c------------------ceEEEEEecceeeEEE
Q psy7039 234 ----TDNNVHEGKAYEYRVSAVNAAGTEKP------KISLDALI-G------------------KRIKEFVTSTTASLNI 284 (516)
Q Consensus 234 ----~~~~l~~g~~~~~~~~~~~~~g~p~p------~i~W~~~~-~------------------~~~~~~~~~~~~~l~i 284 (516)
....+.+|+.+.+.|.+ .|.+.+ .+.|.+.. + .++..........|.|
T Consensus 163 ~~~p~~~~v~~G~~v~L~C~~---~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I 239 (291)
T 2gki_A 163 SQSPSSLAVSAGEKVTMSCKS---SQSLFNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGSGTDFTLTI 239 (291)
T ss_dssp ECSCSEEEEETTSCEEEEEEE---SSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEE
T ss_pred EcCCCEEEEcCCCcEEEEEEc---CCccccccccceeEEEEEECCCCCcEEEEEEcccCCCCcCCCEEEEecCCEEEEEE
Confidence 12346789999999998 666665 89996631 1 1222222344568999
Q ss_pred ccCCCCCceEEEEEEEecC
Q psy7039 285 KNSVRKDSGIYKIEAKNDY 303 (516)
Q Consensus 285 ~~l~~~d~g~y~c~a~n~~ 303 (516)
.+++.+|+|.|+|.|.|..
T Consensus 240 ~~v~~~DsG~Y~C~a~~~~ 258 (291)
T 2gki_A 240 SSVQAEDLAVYYCKQSYYH 258 (291)
T ss_dssp SSCCGGGCEEEEEEEEETT
T ss_pred CCCCHHHCEEEEEEEccCC
Confidence 9999999999999999853
|
| >1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A | Back alignment and structure |
|---|
Probab=99.32 E-value=2.3e-11 Score=107.12 Aligned_cols=152 Identities=16% Similarity=0.165 Sum_probs=100.4
Q ss_pred cccCCceEEEEEEEEccCCCCCceeccccc-ccceE--------------EEEEecceeeEEEccCCCCCceEEEEEEEe
Q psy7039 237 NVHEGKAYEYRVSAVNAAGTEKPKISLDAL-IGKRI--------------KEFVTSTTASLNIKNSVRKDSGIYKIEAKN 301 (516)
Q Consensus 237 ~l~~g~~~~~~~~~~~~~g~p~p~i~W~~~-~~~~~--------------~~~~~~~~~~l~i~~l~~~d~g~y~c~a~n 301 (516)
....|+.+.|.|.. ...+.+.+.+.|.+. .+..+ +.. ...+++|.|.+++.+|+|.|+|.|.|
T Consensus 10 ~g~~G~sv~L~~~~-~~~~~~~~~i~W~k~~~~~~i~~~~~~~~~~~~~~R~~-~~~ngsL~I~~v~~~DsG~Y~c~~~n 87 (182)
T 1hnf_A 10 WGALGQDINLDIPS-FQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYK-LFKNGTLKIKHLKTDDQDIYKVSIYD 87 (182)
T ss_dssp EEETTSCEEECCTT-CCCCSSEEEEEEEEGGGCCEEEEECGGGCEEESCTTEE-ECTTSCEEECSCCGGGCEEEEEEEEE
T ss_pred EEecCCCEEEeCCc-ccccCcCCEEEEEECCCCcEEEEEeCccCCCCCCCeEE-ECCCCCEEECCCChhhCEEEEEEEEe
Confidence 34567777777732 112345778899651 11111 111 12456999999999999999999999
Q ss_pred cCCCcc--eeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEE
Q psy7039 302 DYGIDM--ADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPF 379 (516)
Q Consensus 302 ~~g~~~--~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~ 379 (516)
..|... ..+.|.|......|. +.. .+..+.|.|.+
T Consensus 88 ~~g~~~~~~~~~L~V~~~~~~P~------------------------------------------i~~-~~~~v~L~C~~ 124 (182)
T 1hnf_A 88 TKGKNVLEKIFDLKIQERVSKPK------------------------------------------ISW-TCINTTLTCEV 124 (182)
T ss_dssp TTSCEEEEEEEEEEEECCCCCCE------------------------------------------EEE-ETTTTEEEEEC
T ss_pred CCCceeEEEEEEEEEcCcCCCCE------------------------------------------EEE-ccCcEEEEeEc
Confidence 888753 456677765432221 111 23368899999
Q ss_pred eeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEEE
Q psy7039 380 SGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVY 445 (516)
Q Consensus 380 ~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~ 445 (516)
.+.|.+.+.|++++..+ .. ... .+.+.. .. .|.|.|+|.|.|..|..+....+.
T Consensus 125 ~~~p~~~~~W~~~g~~l-~~-------~~~--~i~~~~-~~-~d~G~Y~C~a~N~~~~~~s~~~~~ 178 (182)
T 1hnf_A 125 MNGTDPELNLYQDGKHL-KL-------SQR--VITHKW-TT-SLSAKFKCTAGNKVSKESSVEPVS 178 (182)
T ss_dssp SSCSSCEEEEEESSCEE-EE-------ESS--CEEEEC-CS-CEEEEEEEEEECSSCEEEEEEEEE
T ss_pred cCCCCCEEEEEECCEEC-CC-------CCc--EEEEec-cc-CCCcEEEEEEEeCCCCcEEcceec
Confidence 99999999999999776 11 111 122322 35 899999999999999877766553
|
| >1q9r_B S25-2 FAB (IGG1K) heavy chain; antigen-binding fragment, anti-carbohydrate, anti-LPS, antibody, immunoglobulin, KDO, complex, immune system; HET: KDA KDO; 1.45A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q9l_B 1q9k_B* 1q9q_B* 1q9v_B* 2r1w_B* 2r1x_B* 2r1y_B* 2r2b_B* 2r2e_B* 2r2h_B* 3bpc_B* 3sy0_B* 3t4y_B* 3t65_B* 2r23_B* 1q9t_B* 3t77_B* 3okl_B* 3okk_B* 3okm_B ... | Back alignment and structure |
|---|
Probab=99.32 E-value=2.2e-11 Score=110.96 Aligned_cols=159 Identities=10% Similarity=0.100 Sum_probs=102.5
Q ss_pred ccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcC--ceeeEEeeCC--ee---e------------
Q psy7039 121 LNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEP--FLNHGWSING--QV---C------------ 181 (516)
Q Consensus 121 ~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p--~~~i~W~~~~--~~---~------------ 181 (516)
+..+.+.+|+.+.|.|.+. +.+ .+.+.|++.. .. +
T Consensus 7 p~~~~v~~G~~v~L~C~~~--------------------------~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~ 60 (222)
T 1q9r_B 7 SGGGLVQSGGSLRLSCATS--------------------------GFTFTDYYMSWVRQPPGKALEWLGFIRNKANGYTT 60 (222)
T ss_dssp ECCCEECTTCCEEEEEEEE--------------------------SSCGGGSCEEEEEECTTSCCEEEEEECCGGGTTCE
T ss_pred CCceeEcCCCEEEEEEEec--------------------------CccCCCCcEEEEEECCCCCcEEEEEEccCCccccc
Confidence 4457789999999999998 543 5567776632 11 0
Q ss_pred --c--cCCceEEeec--CCeeEEEeccCCCCCCeeEEEEEEcCCC-----c--eEEEEEeec-----eeee----ecccc
Q psy7039 182 --Q--IGGRADVQTT--KSETVLDIPFCSRSDTGHYSLTLENNLG-----T--ATASAHVTG-----TEFT----DNNVH 239 (516)
Q Consensus 182 --~--~~~~~~~~~~--~~~~~l~i~~~~~~d~g~Y~c~~~~~~g-----~--~~~~~~~~~-----~~~~----~~~l~ 239 (516)
. ...|+.+... ....+|.|.+++.+|+|.|.|.+.+..+ . ....+.+.. ..+. ...+.
T Consensus 61 ~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~ 140 (222)
T 1q9r_B 61 EYSPSVKGRFTISRDNSQSILYLQMNTLRAEDSATYYCARDHDGYYERFSYWGQGTLVTVSAAKTTPPSVYPLAPGSAAQ 140 (222)
T ss_dssp EECTTTBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECCCSSCCSCCCBCCCEEEEECSSCCBCCEEEEECCCSCCC
T ss_pred ccCcccCCceEEEEECCCCeEEEEECcCCcccCeEEEEEEeccCCcccceEeCCceEEEeccCCCCCCeEEEcccccccc
Confidence 0 1246665543 3467999999999999999999998653 1 111222221 1111 12345
Q ss_pred CCceEEEEEEEEccCCC-CCc-eecccccccc----eEEEEEec----ceeeEEEccCCCCCceEEEEEEEecCCCccee
Q psy7039 240 EGKAYEYRVSAVNAAGT-EKP-KISLDALIGK----RIKEFVTS----TTASLNIKNSVRKDSGIYKIEAKNDYGIDMAD 309 (516)
Q Consensus 240 ~g~~~~~~~~~~~~~g~-p~p-~i~W~~~~~~----~~~~~~~~----~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~~ 309 (516)
+|..+.+.|.+ .|. |.| .+.|.+.... ........ ....|.|.++...| |.|+|.|.|..|.....
T Consensus 141 ~g~~v~L~C~~---~g~~P~p~~v~W~~~g~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-g~y~C~a~n~~~~~~~~ 216 (222)
T 1q9r_B 141 TNSMVTLGCLV---KGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKVD 216 (222)
T ss_dssp CSSEEEEEEEE---EEEBSSCCEEEEGGGTBCTTEEEEEEEEETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGTEEEE
T ss_pred CCCcEEEEEEE---ccEECCCCEEEEecCCeEcceEeccccccCCcEEEEEEEEECchhcCC-CeEEEEEEccCCCCcEE
Confidence 79999999998 553 777 9999763211 11111011 12468899998889 99999999998875433
|
| >1bqu_A Protein (GP130); cytokine receptor, glycoprotein 130, interleukine 6 R beta subunit, signaling protein; 2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1pvh_A 1bj8_A | Back alignment and structure |
|---|
Probab=99.31 E-value=1.7e-11 Score=111.20 Aligned_cols=85 Identities=20% Similarity=0.157 Sum_probs=68.4
Q ss_pred CCCCCCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCCCeEEeEEeecCCcEEEeCCC-cCCCeEEEEEEE
Q psy7039 11 FDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVVVPAGETSCTVPGL-IEGETYQFQVRA 89 (516)
Q Consensus 11 ~~~p~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~i~~l-~~~~~y~~~~~a 89 (516)
..+|++|.+|++...+.+++.|+|.+|...+ . +.+|.|+|+..++.+..+.......+++.|.+| .+++.|.|+|.|
T Consensus 5 g~pP~~P~~l~~~~~~~~sv~l~W~~p~~~~-~-~~~Y~v~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~t~Y~~~V~A 82 (215)
T 1bqu_A 5 GLPPEKPKNLSCIVNEGKKMRCEWDGGRETH-L-ETNFTLKSEWATHKFADCKAKRDTPTSCTVDYSTVYFVNIEVWVEA 82 (215)
T ss_dssp CCCCCCCEEEEEEEETTSCCEEEEECCSCCS-S-CCEEEEEEEETTEECCCEECCSSCTTEEECSSCCCTTSCEEEEEEE
T ss_pred CCCCCCCEeeEeEECCCCcEEEEcCCCCCCC-C-CceEEEEEEEcCCCccccccccCCcceEEEcCCccccccEEEEEEE
Confidence 4679999999999888899999999986443 3 479999998765433333334456789999999 999999999999
Q ss_pred ecCCCCCC
Q psy7039 90 VNAAGPGE 97 (516)
Q Consensus 90 ~n~~g~~~ 97 (516)
.|..|.+.
T Consensus 83 ~n~~G~~~ 90 (215)
T 1bqu_A 83 ENALGKVT 90 (215)
T ss_dssp EETTEEEE
T ss_pred EecccCcc
Confidence 99988765
|
| >1x5l_A Ephrin type-A receptor 8; FN3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 | Back alignment and structure |
|---|
Probab=99.31 E-value=7.1e-12 Score=100.75 Aligned_cols=97 Identities=26% Similarity=0.322 Sum_probs=79.4
Q ss_pred eeccCCCCCCCCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCCCeEEeEEeecCCcEEEeCCCcCCCeEE
Q psy7039 5 VLIKNPFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVVVPAGETSCTVPGLIEGETYQ 84 (516)
Q Consensus 5 ~~~~~~~~~p~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~ 84 (516)
|.++++++.|++|.++++..+++++|.|+|.+|. +.++.|.+|+|+|+..+.............+++.|.+|.++..|.
T Consensus 2 v~~~T~~~~P~~P~~l~~~~~~~~sv~l~W~~p~-~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~ 80 (111)
T 1x5l_A 2 SSGSSGQAAPSQVVVIRQERAGQTSVSLLWQEPE-QPNGIILEYEIKYYEKDKEMQSYSTLKAVTTRATVSGLKPGTRYV 80 (111)
T ss_dssp CCCCCSCCCCCCCCCEECSCBCSSCEEEEECCCS-CCCSCCCEEEEEEEESSSCCSSCEEEEESSSEEEECSCCTTCEEE
T ss_pred ceEEcCCCCCCCCceEEEEEcCCCEEEEEECCCC-CCCCEEEEEEEEEEECCCCceeEEEecCCCCEEEEcCCCCCCEEE
Confidence 5788999999999999999999999999999985 445679999999998653111122234568899999999999999
Q ss_pred EEEEEecCCCCCCCCCCC
Q psy7039 85 FQVRAVNAAGPGEASKPT 102 (516)
Q Consensus 85 ~~~~a~n~~g~~~~s~~~ 102 (516)
|+|+|.|..|.+.++...
T Consensus 81 ~~V~A~n~~G~g~~S~~~ 98 (111)
T 1x5l_A 81 FQVRARTSAGCGRFSQAM 98 (111)
T ss_dssp ECEEEEETTEECCCCCCE
T ss_pred EEEEEEeCCcCCCCcccE
Confidence 999999999988776543
|
| >3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.31 E-value=2.9e-11 Score=109.90 Aligned_cols=158 Identities=11% Similarity=0.091 Sum_probs=108.2
Q ss_pred CCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCCCeEEeEEeecCCcEEEeCCCcCCCeEEEEEEEecCCCC
Q psy7039 16 KPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVVVPAGETSCTVPGLIEGETYQFQVRAVNAAGP 95 (516)
Q Consensus 16 ~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~~~a~n~~g~ 95 (516)
.|.++.+ .....+.|.+.... .+ ...+.|...+.. + .......|.|.+++..|.|.|+|.|.|..|.
T Consensus 24 ~p~~~~v--~~G~~v~L~C~~~~----~p--~~~v~W~~~~~~---~--~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~~~ 90 (218)
T 3k0w_A 24 NPESKAV--LAGQFVKLCCRATG----HP--FVQYQWFKMNKE---I--PNGNTSELIFNAVHVKDAGFYVCRVNNNFTF 90 (218)
T ss_dssp CCCCEEE--ETTSBEEEECEETT----TT--SSEEEEEETTEE---C--TTCCSSEEEETTCCGGGCEEEEEEEECTTCC
T ss_pred CCCCeEE--eCCCcEEEEeeecC----CC--CCEEEEEECCEE---C--CCCCCCEEEEccCChhhCeEeEEEEEcCCCC
Confidence 4445444 35677888887621 11 123455544320 0 1124678999999999999999999997664
Q ss_pred CCCCCCCcceEecc----------CCCCCccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeec
Q psy7039 96 GEASKPTAPIVAKP----------KNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKL 165 (516)
Q Consensus 96 ~~~s~~~~~~~~~~----------~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (516)
.......+.+.... ...+|.+. ..+....+.+|+.+.|.|.+.
T Consensus 91 ~~s~~~~l~V~~~~~~~~~~~~~~~~~~p~~~-~~~~~~~v~~G~~v~L~C~~~-------------------------- 143 (218)
T 3k0w_A 91 EFSQWSQLDVCDIPESFQRSVDGVSESKLQIC-VEPTSQKLMPGSTLVLQCVAV-------------------------- 143 (218)
T ss_dssp EECCCEEEEEECCCGGGCTTCCSBCCSSCEEE-ECCCCEEECTTCCEEEECEEE--------------------------
T ss_pred ceeeEEEEEEEccCcccccccccccCCCceEE-ECCCceeecCCCcEEEEEEec--------------------------
Confidence 32222222222111 11224454 455668899999999999999
Q ss_pred CcCceeeEEeeCCeeeccCCceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCce
Q psy7039 166 SEPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTA 222 (516)
Q Consensus 166 ~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~ 222 (516)
+.|.+.+.|++++..+... ....|.|.+++.+|+|.|+|.+.|..|..
T Consensus 144 g~p~~~v~W~~~~~~~~~~---------~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~ 191 (218)
T 3k0w_A 144 GSPIPHYQWFKNELPLTHE---------TKKLYMVPYVDLEHQGTYWCHVYNDRDSQ 191 (218)
T ss_dssp BSSCCEEEEEETTEECTTC---------CSSEEEESSCCGGGCEEEEEEEECSSCEE
T ss_pred ccCCCeEEEEECCEECCCC---------CCCEEEEeecChhcCEEEEEEEEcCCCCc
Confidence 9999999999999887643 23589999999999999999999977753
|
| >1va9_A DOWN syndrome cell adhesion molecule like- protein 1B; FNIII domain, dscaml1 protein, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1 | Back alignment and structure |
|---|
Probab=99.31 E-value=8.4e-12 Score=102.14 Aligned_cols=101 Identities=20% Similarity=0.310 Sum_probs=81.0
Q ss_pred CcceeccCCCCCCC-CCcceEEEeeeCCeeEEEecCCCCC-CCCceeceEEEEEeCCC-CeEE---eE-EeecCCcEEEe
Q psy7039 2 DHSVLIKNPFDEPG-KPTDLEATDWDKDHVDLQWTPPISD-GGSPITGYVVEMKDKTG-NWEK---AV-VVPAGETSCTV 74 (516)
Q Consensus 2 ~~~~~~~~~~~~p~-~p~~l~~~~~~~~~v~l~W~~p~~~-~~~~i~~Y~v~~~~~~~-~~~~---~~-~~~~~~~~~~i 74 (516)
|..+.+++.++.|. +|.++++..++.+++.|+|.+|..+ .++.|.+|.|+|+..+. .|.. .. ......+++.|
T Consensus 3 S~~~~~~T~~~~P~~~P~~~~~~~~~~~sv~l~W~~p~~~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 82 (122)
T 1va9_A 3 SGSSGISTEEAAPDGPPMDVTLQPVTSQSIQVTWKAPKKELQNGVIRGYQIGYRENSPGSNGQYSIVEMKATGDSEVYTL 82 (122)
T ss_dssp CCCCSSCSSCCCCSSCCEEEEEEECSSSEEEEEEECCCSSTTCSCCCEEEEEEEESSTTSCCSCBCCBCCCCSSEEEEEE
T ss_pred CCCEEEECCCCCCCCCCcceEEEeccCCEEEEEEeCCCCcCCCCcEeEEEEEEEECCCCCCcceEEEEEecCCceeEEEe
Confidence 56788999999996 8999999999999999999998642 45679999999998664 3321 11 12234689999
Q ss_pred CCCcCCCeEEEEEEEecCCCCCCCCCCC
Q psy7039 75 PGLIEGETYQFQVRAVNAAGPGEASKPT 102 (516)
Q Consensus 75 ~~l~~~~~y~~~~~a~n~~g~~~~s~~~ 102 (516)
.+|++++.|.|+|+|.|..|.+.++...
T Consensus 83 ~~L~p~t~Y~~~V~A~n~~G~g~~S~~~ 110 (122)
T 1va9_A 83 DNLKKFAQYGVVVQAFNRAGTGPSSSEI 110 (122)
T ss_dssp ESCCSSCCEEEEEEEEETTEECCCCCCE
T ss_pred CCCCCCCEEEEEEEEEcCCCCCCCccCE
Confidence 9999999999999999999988766543
|
| >3fku_X Neutralizing antibody F10; influenza, hemagglutinin, SCFV, F membrane, envelope protein, fusion protein, membrane, trans virion; HET: NAG BMA; 3.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.31 E-value=3.4e-11 Score=114.08 Aligned_cols=168 Identities=14% Similarity=0.125 Sum_probs=107.0
Q ss_pred ccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCc--CceeeEEeeCC--e---------------ee
Q psy7039 121 LNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSE--PFLNHGWSING--Q---------------VC 181 (516)
Q Consensus 121 ~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--p~~~i~W~~~~--~---------------~~ 181 (516)
+..+.+.+|+++.|.|.+. +. +...+.|++.. . ..
T Consensus 7 p~~~~v~~G~~v~L~C~~~--------------------------~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~ 60 (280)
T 3fku_X 7 SGAEVKKPGSSVKVSCTSS--------------------------EVTFSSFAISWVRQAPGQGLEWLGGISPMFGTPNY 60 (280)
T ss_dssp CCCCEECTTCCEEEEEEEC--------------------------CSCCTTSCEEECCBCSSSCCCCCEEECTTTCCEEE
T ss_pred CCCEEECCCCcEEEEEEee--------------------------ccCCCCeEEEEEEeCCCCCCEEEEEEeccCCcccc
Confidence 5668899999999999998 32 33455665421 0 00
Q ss_pred --ccCCceEEe--ecCCeeEEEeccCCCCCCeeEEEEEEcC------------CCceEEEEEeec---------------
Q psy7039 182 --QIGGRADVQ--TTKSETVLDIPFCSRSDTGHYSLTLENN------------LGTATASAHVTG--------------- 230 (516)
Q Consensus 182 --~~~~~~~~~--~~~~~~~l~i~~~~~~d~g~Y~c~~~~~------------~g~~~~~~~~~~--------------- 230 (516)
....|+.+. ......+|.|.+++.+|+|.|.|.+.+. .+.. ..+.+..
T Consensus 61 ~~~~~~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~~~~~~~g~~~~~~~~~~~-~~L~V~~~~~~~~~~~~~~~~~ 139 (280)
T 3fku_X 61 AQKFQGRVTITADQSTRTAYMDLRSLRSEDTAVYYCARSPSYICSGGTCVFDHWGQG-TLVTVSSGGGGSGGGGSGGGGI 139 (280)
T ss_dssp CGGGTTTCEEEEETTTTEEEEEECSCCSTTCEECCEEECSSSSSSSTTCCCCEECCC-CEEEECC--------------C
T ss_pred CcccCCcEEEEEeCCCCEEEEEECCCChhhCEEEEEEEecCCccccccccccEECCC-EEEEEcCCCCccCCCCCCceEe
Confidence 112466665 3345579999999999999999999886 1111 1112211
Q ss_pred -eee---eeccccCCceEEEEEEEEccCC-CC-Cceecccccc-------------------cceEEEEEecceeeEEEc
Q psy7039 231 -TEF---TDNNVHEGKAYEYRVSAVNAAG-TE-KPKISLDALI-------------------GKRIKEFVTSTTASLNIK 285 (516)
Q Consensus 231 -~~~---~~~~l~~g~~~~~~~~~~~~~g-~p-~p~i~W~~~~-------------------~~~~~~~~~~~~~~l~i~ 285 (516)
..+ ....+.+|+.+.|.|.+ .+ .+ .+.+.|.+.. ..++..........|.|.
T Consensus 140 ~~~v~~~p~~~v~~G~~v~L~C~~---~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~ 216 (280)
T 3fku_X 140 QPGLTQPPSVSKGLRQTATLTCTG---NSNNVGNQGAAWLQQHQGHPPKLLSYRNNDRPSGISERFSASRSGNTASLTIT 216 (280)
T ss_dssp CCSBBCCSEEEECTTCCEEEEEEC---CCCCCCTTCCEEEEECSSSCCEESCCTTCCCCSSSCTTEEEEEETTEEEEEEC
T ss_pred eeEEEeCCcEEEecCCCEEEEEEe---cCCCCCCceEEEEEECCCCCCEEEEEeccccCCCCCCCEEEEccCCEEEEEEC
Confidence 001 11457789999999998 44 33 4788895411 123344445566789999
Q ss_pred cCCCCCceEEEEEEEecCCC---cceeEEEEEecCC
Q psy7039 286 NSVRKDSGIYKIEAKNDYGI---DMADIEVVVVSKP 318 (516)
Q Consensus 286 ~l~~~d~g~y~c~a~n~~g~---~~~~~~l~v~~~p 318 (516)
+++.+|+|.|+|.+.|..+. ......|.|...+
T Consensus 217 ~v~~~DsG~Y~C~~~~~~~~~~~~g~~t~l~V~~~~ 252 (280)
T 3fku_X 217 GLQPEDEADYYCSTWDSSLSAVVFGGGTKLTVLGQP 252 (280)
T ss_dssp SCCGGGCSEEEEEEEETTTTEEEEBCCCEEEEC---
T ss_pred CCCHHHCEEEEEEEecCCCCceEECCCEEEEECCCC
Confidence 99999999999999987622 1223456665444
|
| >3d9a_H Heavy chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_H 1gpo_H 3ks0_H* 1dqd_H 1ndm_B 1nak_H 1dqq_B 1dqm_H 1dqj_B 1nby_B 1nbz_B 1xgu_B 1ndg_B 1xgt_B 1xgp_B 1xgq_B 1xgr_B 1s5i_H 1f8t_H 1f90_H ... | Back alignment and structure |
|---|
Probab=99.31 E-value=1.6e-11 Score=110.95 Aligned_cols=157 Identities=11% Similarity=0.136 Sum_probs=101.7
Q ss_pred cccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcC--ceeeEEeeC--Ceeec-------------
Q psy7039 120 TLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEP--FLNHGWSIN--GQVCQ------------- 182 (516)
Q Consensus 120 ~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p--~~~i~W~~~--~~~~~------------- 182 (516)
.+..+.+.+|+++.|.|.+. +.+ .+.+.|+++ +....
T Consensus 6 ~p~~~~v~~G~~v~L~C~~~--------------------------~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~ 59 (210)
T 3d9a_H 6 ESGPSLVKPSQTLSLTCSVT--------------------------GDSITSDYWSWIRKFPGNRLEYMGYVSYSGSTYY 59 (210)
T ss_dssp EESCSEECTTSCEEEEEEEE--------------------------SSCGGGSCEEEEEEETTTEEEEEEEECTTSCEEE
T ss_pred cCCCEEecCCCcEEEEEEEe--------------------------cccCCCCcEEEEEeCCCCCcEEEEEEcCCCCeEE
Confidence 34557889999999999998 543 367777763 21110
Q ss_pred ---cCCceEEee--cCCeeEEEeccCCCCCCeeEEEEEEcCC--CceEEEEEeec-----eeee----eccccCCceEEE
Q psy7039 183 ---IGGRADVQT--TKSETVLDIPFCSRSDTGHYSLTLENNL--GTATASAHVTG-----TEFT----DNNVHEGKAYEY 246 (516)
Q Consensus 183 ---~~~~~~~~~--~~~~~~l~i~~~~~~d~g~Y~c~~~~~~--g~~~~~~~~~~-----~~~~----~~~l~~g~~~~~ 246 (516)
...|+.+.. .+...+|.|.+++.+|+|.|.|.+.+.. +.. ..+.+.. ..+. ...+.+|..+.+
T Consensus 60 ~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~-~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L 138 (210)
T 3d9a_H 60 NPSLKSRISITRDTSKNQYYLDLNSVTTEDTATYYCANWDGDYWGQG-TLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTL 138 (210)
T ss_dssp CGGGTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEETTSSCBCCC-EEEEECCCCCBCCEEEEECCTTSCCCSSEEEE
T ss_pred CcccCceEEEEecCCCCEEEEEECCCCcccCEEEEEEEecCcccccc-eEEEeccCCCCCCEEEEecCCcccccCCcEEE
Confidence 135666553 2345699999999999999999998853 221 1222211 1111 123568999999
Q ss_pred EEEEEccCCC-CCc-eecccccccce--E---EEEEe---cceeeEEEccCCCCCceEEEEEEEecCCCcc
Q psy7039 247 RVSAVNAAGT-EKP-KISLDALIGKR--I---KEFVT---STTASLNIKNSVRKDSGIYKIEAKNDYGIDM 307 (516)
Q Consensus 247 ~~~~~~~~g~-p~p-~i~W~~~~~~~--~---~~~~~---~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~ 307 (516)
.|.+ .|. |.| .+.|.+..... . ..... .....|.|..+..++ |.|+|.|.|..|...
T Consensus 139 ~C~~---~g~~P~p~~v~W~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~ 205 (210)
T 3d9a_H 139 GCLV---KGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTK 205 (210)
T ss_dssp EEEE---EEEBSSCCEEEEGGGTBCTTEEECCCEEETTEEEEEEEEEEEGGGTTT-SCCEEEEEEGGGTEE
T ss_pred EEEE---eeEecCCcEEEEeeCCcccceEEcCCccCCCcEEEEEEEEEcHHHcCC-CcEEEEEEeCCCCcc
Confidence 9998 454 777 99997632210 0 00000 123468888888766 999999999987754
|
| >3r8q_A Fibronectin; heparin, FNIII, heparin binding, cell adhesion; 2.40A {Homo sapiens} PDB: 1fnh_A | Back alignment and structure |
|---|
Probab=99.31 E-value=2.9e-10 Score=108.14 Aligned_cols=174 Identities=17% Similarity=0.201 Sum_probs=123.9
Q ss_pred EecceeeEEEccCCCCCceEEEEEEEecCCCcceeEEEEEecCCC-CCCCCceeeeccCCeeEEEecCCCCCCCCceeec
Q psy7039 275 VTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPG-PPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGA 353 (516)
Q Consensus 275 ~~~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~-~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y 353 (516)
.......+.|.+|.+...|.|++.|.|..|...... ..+...+. .+...+.+...+.+++.|+|.+|.. .+.+|
T Consensus 69 ~~~~~~~~~i~~L~p~t~Y~~~V~a~~~~g~s~~s~-~~~~t~~~~~~P~~l~~~~~~~~sv~l~W~~p~~----~~~~Y 143 (290)
T 3r8q_A 69 LAPDSSSVVVSGLMVATKYEVSVYALKDTLTSRPAQ-GVVTTLENVSPPRRARVTDATETTITISWRTKTE----TITGF 143 (290)
T ss_dssp ECTTCCEEEECSCCSSCEEEEEEEEEETTEECCCEE-EEEECCCCCCCCEEEEEEEECSSCEEEEEECCSC----CCCEE
T ss_pred cCCCccEEEeCCCCCCCEEEEEEEEEeCCCCCCCcc-eeEecCCCCCCCceeEEEEcCCCeEEEEEeCCCC----cccEE
Confidence 345567899999999999999999999888765442 33333221 2222277788899999999998742 34555
Q ss_pred cccccccccccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEc
Q psy7039 354 PKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVN 433 (516)
Q Consensus 354 ~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n 433 (516)
. |.|...+. ..............+.|.+|.+ ...|.|++.|.|
T Consensus 144 ~--------------------------------v~~~~~~~----~~~~~~~~~~~~~~~~i~~L~p-~t~Y~~~V~A~n 186 (290)
T 3r8q_A 144 Q--------------------------------VDAVPANG----QTPIQRTIKPDVRSYTITGLQP-GTDYKIYLYTLN 186 (290)
T ss_dssp E--------------------------------EEEEESSS----CCCEEEEECTTCSEEEECSCCT-TCEEEEEEEEEE
T ss_pred E--------------------------------EEEEECCC----CcceEEecCCCccEEEECCCCC-CCEEEEEEEEEe
Confidence 1 22222211 1112233334455789999999 999999999999
Q ss_pred CCCceeEEEEEEEecCCCCCCCCcccccccCCeEEEEeeCCCCCCCCCcceEEEEEEecCCCc
Q psy7039 434 TVGSDSASCKVYVVDKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATGV 496 (516)
Q Consensus 434 ~~G~~s~s~~l~v~~~p~~P~~~l~~~~~~~~~~~l~W~~p~~~~~~~i~~Y~v~~~~~~~~~ 496 (516)
..|.+.. ..+.....|.+| ..+.+..++.+++.|+|++|. +.+.+|.|+|+..+...
T Consensus 187 ~~g~s~~-~~~~~~t~p~~P-~~l~~~~~~~~sv~l~W~~p~----~~~~~Y~v~~~~~~~~~ 243 (290)
T 3r8q_A 187 DNARSSP-VVIDASTAIDAP-SNLRFLATTPNSLLVSWQPPR----ARITGYIIKYEKPGSPP 243 (290)
T ss_dssp TTEECCC-EEEEEECCCCCC-EEEEEEEEETTEEEEEEECCS----SCCCEEEEEEECTTSCC
T ss_pred CCcccCC-EEEEecCCCCCC-CccEEEeeCCCEEEEEEeCCC----CcccEEEEEEEeCCCCc
Confidence 9887543 455666778887 788998899999999999875 46999999999876544
|
| >1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E* | Back alignment and structure |
|---|
Probab=99.31 E-value=1.4e-12 Score=117.50 Aligned_cols=147 Identities=13% Similarity=0.065 Sum_probs=97.4
Q ss_pred EecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEeecCCeeEEEeccCCC
Q psy7039 126 IKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFCSR 205 (516)
Q Consensus 126 v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~ 205 (516)
+.+|+++.|.|.+ |.+.+.|++++..+... .....+|.|.+++.
T Consensus 15 ~~~G~~v~L~C~~-----------------------------p~~~i~W~k~g~~l~~~-------~~~~~~L~i~~v~~ 58 (204)
T 1sy6_A 15 YQEDGSVLLTCDA-----------------------------EAKNITWFKDGKMIGFL-------TEDKKKWNLGSNAK 58 (204)
T ss_dssp CCSSSEEEEEECS-----------------------------CSSEEEEEETTEEEEEE-------ESSCCCEEEEEGGG
T ss_pred ecCCCeEEEEEcC-----------------------------CCCEEEEEECCEECCCC-------CCCCCeEEeCCCCc
Confidence 3589999999964 46789999999877532 12346899999999
Q ss_pred CCCeeEEEEEEcCCCceEEEEEee--------------------------------ceee--eecccc-CCceEEEEEEE
Q psy7039 206 SDTGHYSLTLENNLGTATASAHVT--------------------------------GTEF--TDNNVH-EGKAYEYRVSA 250 (516)
Q Consensus 206 ~d~g~Y~c~~~~~~g~~~~~~~~~--------------------------------~~~~--~~~~l~-~g~~~~~~~~~ 250 (516)
+|+|.|+|.+.+..+ ....+.+. ...+ ....+. +|+.+.|.|.
T Consensus 59 ~DsG~Y~C~~~~~~s-~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~v~~~G~~v~L~C~- 136 (204)
T 1sy6_A 59 DPRGMYQCKGSQNKS-KPLQVYYRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQTPYKVSISGTTVILTCP- 136 (204)
T ss_dssp CCEEEEEEESSSSCC-CCEEEEEEC------------------------------------CCCCEEEEETTEEEEECS-
T ss_pred CCCEEEEEEecCCCC-eeEEEEEEEeccccccccccccccccccccccccccccccccceecCCceeeecCCcEEEEcC-
Confidence 999999999754322 21222211 0000 011233 7899999985
Q ss_pred EccCCCCCceecccccccceE----EEEEecceeeEEEccC-CCCCceEEEEEEEecCCCc-ceeEEEEE
Q psy7039 251 VNAAGTEKPKISLDALIGKRI----KEFVTSTTASLNIKNS-VRKDSGIYKIEAKNDYGID-MADIEVVV 314 (516)
Q Consensus 251 ~~~~g~p~p~i~W~~~~~~~~----~~~~~~~~~~l~i~~l-~~~d~g~y~c~a~n~~g~~-~~~~~l~v 314 (516)
|.|.|.+.|.+....-. ..........|.|.++ ..+|+|.|+|.|.|..|.. +..+.|.+
T Consensus 137 ----g~p~p~i~W~k~~~~l~~~~~~~~~~~~~~~L~I~~v~~~~D~G~Y~C~A~N~~g~~~s~~l~l~~ 202 (204)
T 1sy6_A 137 ----QYPGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCYPRGSKPEDANFYLYLRA 202 (204)
T ss_dssp ----CCCSSCEEEEETTEEESCCTTCTTEEEETTEEEETTCCHHHHCEEEEEEETTSCGGGSSCEEEEEE
T ss_pred ----CCCCCceEEEECCEECCCccCCceEecCCCEEEEeeCCccccCEEEEEEeccCCCCceeEEEEEEE
Confidence 67889999965221100 0000113678999999 9999999999999999863 44444443
|
| >1pz5_B Heavy chain of FAB (SYA/J6); antibody-antigen structure, peptide-carbohydrate mimicry, VA design, immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1m7d_B* 1m71_B* 1m7i_B* 1r24_B 1uz6_F 1uz8_B* 1clz_H* | Back alignment and structure |
|---|
Probab=99.31 E-value=1.5e-11 Score=111.87 Aligned_cols=163 Identities=16% Similarity=0.173 Sum_probs=105.4
Q ss_pred ccccCCceEEEEEEEEccCCCC--Cceecccccc-c-------------------------ceEEEEEe--cceeeEEEc
Q psy7039 236 NNVHEGKAYEYRVSAVNAAGTE--KPKISLDALI-G-------------------------KRIKEFVT--STTASLNIK 285 (516)
Q Consensus 236 ~~l~~g~~~~~~~~~~~~~g~p--~p~i~W~~~~-~-------------------------~~~~~~~~--~~~~~l~i~ 285 (516)
..+.+|..+.|.|.+ .|.+ .+.+.|.+.. + .++.+... .....|.|.
T Consensus 10 ~~~~~G~~v~L~C~~---~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~ 86 (220)
T 1pz5_B 10 GLVQPGGSMKLSCVA---SGFTFSNYWMEWVRQSPEKGLEWVAEIRLKSNNYATHYAESVKGRFTISRDDSKSSVYLQMN 86 (220)
T ss_dssp EEECTTCCEEEEEEE---ESSCGGGSEEEEEEEETTTEEEEEEEECCGGGTTCEEECGGGTTTEEEEEEGGGTEEEEEEC
T ss_pred EEEcCCCeEEEEEEE---cCCccCCccEEEEEeCCCCCcEEEEEEEcCCCccccccCcccCCcEEEEEeCCCCeEEEEEc
Confidence 356789999999998 4444 6889996521 1 12222221 234589999
Q ss_pred cCCCCCceEEEEEEEecCCCc---ceeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeecccccccccc
Q psy7039 286 NSVRKDSGIYKIEAKNDYGID---MADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSI 362 (516)
Q Consensus 286 ~l~~~d~g~y~c~a~n~~g~~---~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~ 362 (516)
+++.+|+|.|+|.+.|..+.. .....|.|...+.. .|.... . .
T Consensus 87 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~--~P~i~~-----------~---------------------~ 132 (220)
T 1pz5_B 87 NLRAEDTGIYYCTRGGAVGAMDYWGQGTSVTVSSATTT--APSVYP-----------L---------------------V 132 (220)
T ss_dssp SCCGGGCEEEEEEEECTTSSEEEECCCEEEEECSSCCB--CCEEEE-----------E---------------------C
T ss_pred cCCHHHCEEEEEEEecCCcccceECCCEEEEEccCCCC--CCeEEE-----------c---------------------c
Confidence 999999999999999875421 12356666532211 110000 0 0
Q ss_pred ccEEEEcCCeEEEEEEEeee-cCC-ceEEEECCeecC---CC-----CceEEEEcCCeEEEEEcCceecCCceEEEEEEE
Q psy7039 363 RDMTVLAGEEFTITVPFSGR-PKP-TPIWTVNGDEVS---PD-----GRIKFETSENQTIYRNKSAKRATDSGSYTIQLV 432 (516)
Q Consensus 363 ~~~~v~~g~~~~l~C~~~g~-p~~-~i~W~~~~~~l~---~~-----~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~ 432 (516)
....+..|+.+.|.|.+.|. |.| .+.|++++.... .. ..+.. .+.|.|..+.. ++ |.|+|.|.
T Consensus 133 ~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~~~~~~~~~~~~~~~~~~~~-----~s~L~i~~~~~-~~-g~Y~C~a~ 205 (220)
T 1pz5_B 133 PGCSDTSGSSVTLGCLVKGYFPEPVTVKWNYGALSSGVRTVSSVLQSGFYSL-----SSLVTVPSSTW-PS-QTVICNVA 205 (220)
T ss_dssp CCSCCSCSSSEEEEEEEEEEBSSCCEEEEGGGTCCTTEEECCCEEETTEEEE-----EEEEEECGGGT-TT-SCCEEEEE
T ss_pred cccccCCCCcEEEEEEEEEEeCCCeEEEEecCCcccceEEcCCcccCCeEEE-----EEEEEEcchhc-CC-ceEEEEEE
Confidence 01123578999999999998 888 999999886311 00 11111 25789988887 77 99999999
Q ss_pred cCCCceeEEE
Q psy7039 433 NTVGSDSASC 442 (516)
Q Consensus 433 n~~G~~s~s~ 442 (516)
|..|....++
T Consensus 206 n~~~~~~~~~ 215 (220)
T 1pz5_B 206 HPASKVDLIK 215 (220)
T ss_dssp EGGGTEEEEE
T ss_pred ECCccEeeee
Confidence 9999755443
|
| >2ed9_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.31 E-value=2.5e-11 Score=99.62 Aligned_cols=99 Identities=23% Similarity=0.388 Sum_probs=82.8
Q ss_pred CcceeccCCCCCCC-CCcceEEEeeeCCeeEEEecCCCCC-CCCceeceEEEEEeCCC-CeEEeEEeecCCcEEEeCCCc
Q psy7039 2 DHSVLIKNPFDEPG-KPTDLEATDWDKDHVDLQWTPPISD-GGSPITGYVVEMKDKTG-NWEKAVVVPAGETSCTVPGLI 78 (516)
Q Consensus 2 ~~~~~~~~~~~~p~-~p~~l~~~~~~~~~v~l~W~~p~~~-~~~~i~~Y~v~~~~~~~-~~~~~~~~~~~~~~~~i~~l~ 78 (516)
+..+.+++..+.|. +|.++++..+++++|.|+|.+|..+ .++.|.+|.|+|+..+. .|... .....+++.|.+|+
T Consensus 16 s~~~~~~T~~~~P~~~P~~l~~~~~~~~sv~l~W~~p~~~~~~g~i~~Y~v~~~~~~~~~~~~~--~~~~~~~~~i~~L~ 93 (124)
T 2ed9_A 16 TDDITVVTLSDVPSAPPQNVSLEVVNSRSIKVSWLPPPSGTQNGFITGYKIRHRKTTRRGEMET--LEPNNLWYLFTGLE 93 (124)
T ss_dssp CCCCCCCCCCCCCSSCCBSCCEEEEETTEEEEECBCCCTTTCCSCCCEEEEEEEESSSSCCEEE--ECSSCSEEEEECCC
T ss_pred CCCEEEEcCCCCCCCCCeeeEEEEcCCCEEEEEEECcCCcCCCcEEeEEEEEEEECCCCcceEE--ecCCcCEEEEcCCC
Confidence 45677888888887 8999999999999999999998642 56779999999998766 55443 45678999999999
Q ss_pred CCCeEEEEEEEecCCCCCCCCCCC
Q psy7039 79 EGETYQFQVRAVNAAGPGEASKPT 102 (516)
Q Consensus 79 ~~~~y~~~~~a~n~~g~~~~s~~~ 102 (516)
+++.|.|+++|.|..|.+.++...
T Consensus 94 p~t~Y~~~V~A~n~~G~g~~S~~~ 117 (124)
T 2ed9_A 94 KGSQYSFQVSAMTVNGTGPPSNWY 117 (124)
T ss_dssp SSCEEEECEEEECSSCBCCCCCCE
T ss_pred CCCEEEEEEEEEcCCccCCCCCCE
Confidence 999999999999999988776543
|
| >2gki_A Nuclease; anti-DNA antibody, catalytic antibody, immune system; 2.88A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.31 E-value=3e-11 Score=115.12 Aligned_cols=179 Identities=16% Similarity=0.107 Sum_probs=114.0
Q ss_pred ccccCCceEEEEEEEEccCCCC--Cceecccccc-c-----------------------ceEEEEE--ecceeeEEEccC
Q psy7039 236 NNVHEGKAYEYRVSAVNAAGTE--KPKISLDALI-G-----------------------KRIKEFV--TSTTASLNIKNS 287 (516)
Q Consensus 236 ~~l~~g~~~~~~~~~~~~~g~p--~p~i~W~~~~-~-----------------------~~~~~~~--~~~~~~l~i~~l 287 (516)
..+.+|+.+.+.|.+ .|.+ .+.+.|.+.. + .++.+.. ......|.|.++
T Consensus 32 ~~v~~G~~v~L~C~~---~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v 108 (291)
T 2gki_A 32 ELVKPGASVKMSCKA---SGYTFTSYVMHWVKQKPGQGLEWIGYINPYNDGTKYNEKFKGKATLTSDKSSSTAYMELSSL 108 (291)
T ss_dssp EEECTTCCEEEEEEE---ESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECGGGBTTBCEEEEGGGTEEEEEECSC
T ss_pred EEecCCCCEEEEEec---cCCcccccEEEEEEECCCCCcEEEEEEecCCCccccCcccCCCEEEEEeCCCCEEEEEECcC
Confidence 356789999999997 4544 5788996521 1 1111111 123568999999
Q ss_pred CCCCceEEEEEEEecC-CCc----ceeEEEEEecC--------CCCC-CCCceeeeccCCeeEEEecCCCCCCCCceeec
Q psy7039 288 VRKDSGIYKIEAKNDY-GID----MADIEVVVVSK--------PGPP-TGPIDYTTVTPESVSMSWKPPVDDGGTPITGA 353 (516)
Q Consensus 288 ~~~d~g~y~c~a~n~~-g~~----~~~~~l~v~~~--------p~~p-~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y 353 (516)
+.+|+|.|.|.+.|.. |.. .....|.|... ..++ ..+..+.
T Consensus 109 ~~~DsG~Y~C~~~~~~~g~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~v~------------------------- 163 (291)
T 2gki_A 109 TSEDSAVYYCARGAYKRGYAMDYWGQGTSVTVSSRGGGGSGGGGSGGGGSDLVMS------------------------- 163 (291)
T ss_dssp CGGGCEEEEEEEECGGGTTCEEEECCCEEEEECC----------------CCCEE-------------------------
T ss_pred CHHHCEEEEEEEeccccccccceeCCCcEEEEecCCccccccccCCCCCccceEE-------------------------
Confidence 9999999999999874 211 12235555541 0000 0000000
Q ss_pred cccccccccccEEEEcCCeEEEEEEEeeecCC------ceEEEECC--eecC------------CCCceEEEEcCCeEEE
Q psy7039 354 PKITSDLSIRDMTVLAGEEFTITVPFSGRPKP------TPIWTVNG--DEVS------------PDGRIKFETSENQTIY 413 (516)
Q Consensus 354 ~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~------~i~W~~~~--~~l~------------~~~~~~~~~~~~~~~l 413 (516)
..+....+.+|+.+.|.|.+.+.+.+ .+.|+++. ..+. ...++..........|
T Consensus 164 ------~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L 237 (291)
T 2gki_A 164 ------QSPSSLAVSAGEKVTMSCKSSQSLFNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGSGTDFTL 237 (291)
T ss_dssp ------CSCSEEEEETTSCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEE
T ss_pred ------cCCCEEEEcCCCcEEEEEEcCCccccccccceeEEEEEECCCCCcEEEEEEcccCCCCcCCCEEEEecCCEEEE
Confidence 12345678999999999999888765 89999863 2110 1356666555566789
Q ss_pred EEcCceecCCceEEEEEEEcCCCce-eEEEEEEEecC
Q psy7039 414 RNKSAKRATDSGSYTIQLVNTVGSD-SASCKVYVVDK 449 (516)
Q Consensus 414 ~i~~~~~~~~~g~y~c~a~n~~G~~-s~s~~l~v~~~ 449 (516)
+|.++.. .|+|.|.|.|.|..... ..-..|.|...
T Consensus 238 ~I~~v~~-~DsG~Y~C~a~~~~~~~fg~gt~l~v~~~ 273 (291)
T 2gki_A 238 TISSVQA-EDLAVYYCKQSYYHMYTFGSGTKLEIKHH 273 (291)
T ss_dssp EESSCCG-GGCEEEEEEEEETTEEEECCCEEEEEECC
T ss_pred EECCCCH-HHCEEEEEEEccCCceEEcCCEEEEEEee
Confidence 9999999 99999999999864321 11245566543
|
| >3liz_H 4C3 monoclonal antibody heavy chain; hydrolase-immune system complex; HET: NAG BMA MAN; 1.80A {Mus musculus} PDB: 3rvv_D* 3rvu_D 3rvt_D* 3rvw_D* 3rvx_D 1lo4_H 1ub6_H 3r06_B 3r08_H | Back alignment and structure |
|---|
Probab=99.30 E-value=3.7e-11 Score=111.98 Aligned_cols=128 Identities=14% Similarity=0.128 Sum_probs=83.7
Q ss_pred ceeeEEEccCCCCCceEEEEEEEecC----CCcceeEEEEEecC-CCCCCCCceeeeccCCeeEEEecCCCCCCCCceee
Q psy7039 278 TTASLNIKNSVRKDSGIYKIEAKNDY----GIDMADIEVVVVSK-PGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITG 352 (516)
Q Consensus 278 ~~~~l~i~~l~~~d~g~y~c~a~n~~----g~~~~~~~l~v~~~-p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~ 352 (516)
....|.|.+++.+|+|.|.|.+.+.. +.......+.|... +.+|. +..
T Consensus 77 ~~~sL~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~--i~~------------------------- 129 (253)
T 3liz_H 77 NTLFLQMSSLKSEDTAMYYCTRDPAGRAWFAYWGQGTLVTVSAAKTTPPS--VYP------------------------- 129 (253)
T ss_dssp TEEEEEECSCCGGGCEEEEEEECCBTTTBCCEECCCEEEEECSSCCBCCE--EEE-------------------------
T ss_pred CEEEEEECCCChhhCEEEEEEEecCCcceeeEECCCEEEEEeccCCCCCe--EEE-------------------------
Confidence 45679999999999999999998762 22233356666532 22210 000
Q ss_pred ccccccccccccEEEEcCCeEEEEEEEee-ecCC-ceEEEECCeecCC--------CCceEEEEcCCeEEEEEcCceecC
Q psy7039 353 APKITSDLSIRDMTVLAGEEFTITVPFSG-RPKP-TPIWTVNGDEVSP--------DGRIKFETSENQTIYRNKSAKRAT 422 (516)
Q Consensus 353 y~~~~~~~~~~~~~v~~g~~~~l~C~~~g-~p~~-~i~W~~~~~~l~~--------~~~~~~~~~~~~~~l~i~~~~~~~ 422 (516)
......+..|+.+.|.|.+.+ .|.+ .+.|++++..+.. ...|... +.|.|..... +
T Consensus 130 --------~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~~~~~~~~~~~~~~~~~g~~~~~-----s~L~i~~~~~-~ 195 (253)
T 3liz_H 130 --------LAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLS-----SSVTVPSSTW-P 195 (253)
T ss_dssp --------ECC------CCEEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEEETTEEEEE-----EEEEEETTST-T
T ss_pred --------ecCCcccCCCCcEEEEEEEeeEeCCCeEEEEEeCCeecceEeCCccccCCeEEEE-----EEEEEcHHHC-C
Confidence 011223457999999999998 6666 8999998863311 1222221 4689999888 8
Q ss_pred CceEEEEEEEcCCCceeEEEEEEEe
Q psy7039 423 DSGSYTIQLVNTVGSDSASCKVYVV 447 (516)
Q Consensus 423 ~~g~y~c~a~n~~G~~s~s~~l~v~ 447 (516)
| |.|+|.|.|..+.......+.+.
T Consensus 196 d-g~ytC~v~~~~~~~~~~~~~~~~ 219 (253)
T 3liz_H 196 S-ETVTCNVAHPASSTKVDKKIVPR 219 (253)
T ss_dssp T-SCCEEEEEEGGGTEEEEEECCCC
T ss_pred C-ceEEEEEEECCCCcceEEEecCc
Confidence 8 99999999999887776666655
|
| >1x9q_A SCFV, 4M5.3 anti-fluorescein single chain antibody fragment; VERY high affinity, antibody binding, electrostatics, directed evolution; HET: FLU; 1.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.30 E-value=2.9e-11 Score=113.74 Aligned_cols=155 Identities=15% Similarity=0.143 Sum_probs=104.3
Q ss_pred CcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcC-----ceeeEEeeCC--ee---ec------
Q psy7039 119 STLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEP-----FLNHGWSING--QV---CQ------ 182 (516)
Q Consensus 119 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-----~~~i~W~~~~--~~---~~------ 182 (516)
..+..+.+.+|+++.|.|.+. +.+ .+.+.|++.. .. +.
T Consensus 20 ~~p~~~~v~~G~~v~L~C~~~--------------------------~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~ 73 (268)
T 1x9q_A 20 QTPLSLPVSLGDQASISCRSS--------------------------QSLVHSNGNTYLRWYLQKPGQSPKVLIYKVSNR 73 (268)
T ss_dssp EECSEECCCTTCCEEEEEEES--------------------------SCCBCTTSCBCEEEEEECTTSCCEEEEETTTEE
T ss_pred eeCCeEEecCCCCEEEEeEec--------------------------CCcccccCCceEEEEEECCCCCCEEEEEecCCC
Confidence 445667889999999999998 555 4678888742 11 10
Q ss_pred ---cCCceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCceE---EEEEeec--------------------------
Q psy7039 183 ---IGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTAT---ASAHVTG-------------------------- 230 (516)
Q Consensus 183 ---~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~---~~~~~~~-------------------------- 230 (516)
...|+.+...+...+|.|.+++.+|+|.|.|.+.+..+... ..+.+..
T Consensus 74 ~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~~p~~pp~~~~~~~~~~~~~~v 153 (268)
T 1x9q_A 74 VSGVPDRFSGSGSGTDFTLKINRVEAEDLGVYFCSQSTHVPWTFGGGTKLEIKSSADDAKKDAAKKDDAKKDDAKKDGGV 153 (268)
T ss_dssp CTTSCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEC------------------------CGGGC
T ss_pred CCCCcccEEEEcCCCEEEEEECCCChhHCEEEEEEEecCCCceEcCCEEEEEccCccCCCccccccccccccccccccce
Confidence 13567666556677999999999999999999988643211 1111111
Q ss_pred --eeeeeccccCCceEEEEEEEEccCCCC--Cceecccccc-cc-------------------------eEEEEEe--cc
Q psy7039 231 --TEFTDNNVHEGKAYEYRVSAVNAAGTE--KPKISLDALI-GK-------------------------RIKEFVT--ST 278 (516)
Q Consensus 231 --~~~~~~~l~~g~~~~~~~~~~~~~g~p--~p~i~W~~~~-~~-------------------------~~~~~~~--~~ 278 (516)
.......+.+|+.+.|.|.+ .|.+ .+.+.|.+.. +. ++.+... ..
T Consensus 154 ~~~~~~~~~v~~G~~v~L~C~~---~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 230 (268)
T 1x9q_A 154 KLDETGGGLVQPGGAMKLSCVT---SGFTFGHYWMNWVRQSPEKGLEWVAQFRNKPYNYETYYSDSVKGRFTISRDDSKS 230 (268)
T ss_dssp EEEEECCEEECTTCCEEEEEEE---ESSCGGGCEEEEEEEETTTEEEEEEEECCGGGTTCEEECTTTTTTEEEEEEGGGT
T ss_pred EEECCCceEecCCCcEEEEEEe---cCccccccEEEEEEeCCCCCcEEEEEEcccccccccccCCccCCeEEEEEeCCCC
Confidence 00113457789999999998 4544 3789996521 11 1222111 12
Q ss_pred eeeEEEccCCCCCceEEEEEEEec
Q psy7039 279 TASLNIKNSVRKDSGIYKIEAKND 302 (516)
Q Consensus 279 ~~~l~i~~l~~~d~g~y~c~a~n~ 302 (516)
...|.|.+++.+|+|.|+|.+.+.
T Consensus 231 ~~~L~I~~v~~~DsG~Y~C~a~~~ 254 (268)
T 1x9q_A 231 SVYLQMNNLRVEDTGIYYCTGASY 254 (268)
T ss_dssp EEEEEECSCCGGGCEEEEEEEEET
T ss_pred EEEEEECCCCHHHCEEEEEEEccC
Confidence 468999999999999999999874
|
| >2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.30 E-value=6.2e-12 Score=110.72 Aligned_cols=148 Identities=15% Similarity=0.141 Sum_probs=100.5
Q ss_pred ccccCCceEEEEEEEEccCC-CCCceecccccccceE------------------EEEEecceeeEEEccCCCCCceEEE
Q psy7039 236 NNVHEGKAYEYRVSAVNAAG-TEKPKISLDALIGKRI------------------KEFVTSTTASLNIKNSVRKDSGIYK 296 (516)
Q Consensus 236 ~~l~~g~~~~~~~~~~~~~g-~p~p~i~W~~~~~~~~------------------~~~~~~~~~~l~i~~l~~~d~g~y~ 296 (516)
..+.+|+.+.|.|.+ .+ .+.+.+.|.+.....+ +.......+.|.|.+++..|+|.|+
T Consensus 9 v~v~~G~~vtL~c~~---~~~~~~~~i~W~k~~~~~i~~~~~~~~~~~~~~~~~~R~~l~~~~~sL~I~~v~~~D~G~Y~ 85 (180)
T 2dru_A 9 VNAITGSNVTLTILK---HPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDLDKTNGALRIYNVSKEDRGDYY 85 (180)
T ss_dssp EEEETTSCEEECCCS---SCCCSCSEEEEESSSSCEEEEECSSSCEEECSSTTTTTEEECTTTCCEEECSCCGGGCEEEE
T ss_pred EEEEeCCCEEEeCCC---CCCCceeEEEEEecCCeEEEEEECCCCeeEcchhcCCeEEEeCCCccEEEcCCCHHHCeEEE
Confidence 345689999999875 23 3467899965211110 1112245678999999999999999
Q ss_pred EEEEecCCCcceeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEE
Q psy7039 297 IEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTIT 376 (516)
Q Consensus 297 c~a~n~~g~~~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~ 376 (516)
|.+.+.. .....+.|.|..++..|. + ...+..+.|.
T Consensus 86 C~v~~~~-~~~~~~~L~V~~~~~~P~------------------------------------------i-~~~~~~v~L~ 121 (180)
T 2dru_A 86 MRMLHET-EDQWKITMEVYEMVSKPM------------------------------------------I-YWECSNATLT 121 (180)
T ss_dssp EEEESSS-EEEEEEEEEEECCCCCCE------------------------------------------E-EEEGGGTEEE
T ss_pred EEEEcCC-eEEEEEEEEEECCCCCCE------------------------------------------E-EecCCCEEEE
Confidence 9998766 555667777766433321 1 1134568999
Q ss_pred EEE-eeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEEEE
Q psy7039 377 VPF-SGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCK 443 (516)
Q Consensus 377 C~~-~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~ 443 (516)
|.+ .| |.+.+.|++++..+. .. ....+.+.. . .|.|.|+|.|.|..|.......
T Consensus 122 C~~~~g-p~p~i~W~~~~~~l~-------~~--~~~~l~~~~--~-~d~g~Y~C~a~N~~~~~~~~~~ 176 (180)
T 2dru_A 122 CEVLEG-TDVELKLYQGKEHLR-------SL--RQKTMSYQW--T-NLRAPFKCKAVNRVSQESEMEV 176 (180)
T ss_dssp EECSSC-TTCEEEEEETTEEEE-------EE--SSSEEEEEC--S-CCSSCEEEEEEETTEEEEEEEC
T ss_pred EEeCCC-CCCEEEEEECCeECc-------CC--CCCEEEEEE--h-hcCccEEEEEecCcCcccccee
Confidence 999 56 889999999997763 11 112455522 5 8999999999999987655443
|
| >1hxm_B Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 | Back alignment and structure |
|---|
Probab=99.30 E-value=2.5e-10 Score=105.57 Aligned_cols=132 Identities=11% Similarity=0.070 Sum_probs=82.8
Q ss_pred ceeeEEEccCCCCCceEEEEEEEecCC-C------cceeEEEEEecCCC----CCCCCceeeeccCCeeEEEecCCCCCC
Q psy7039 278 TTASLNIKNSVRKDSGIYKIEAKNDYG-I------DMADIEVVVVSKPG----PPTGPIDYTTVTPESVSMSWKPPVDDG 346 (516)
Q Consensus 278 ~~~~l~i~~l~~~d~g~y~c~a~n~~g-~------~~~~~~l~v~~~p~----~p~~p~~~~~~~~~~~~l~W~~p~~~~ 346 (516)
....|.|.+++.+|+|.|.|.+.+... . ......|.|...+. +|...+
T Consensus 78 ~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~p~~~v--------------------- 136 (242)
T 1hxm_B 78 STSTLTIHNVEKQDIATYYCALWEAQQELGKKIKVFGPGTKLIITDKQLDADVSPKPTI--------------------- 136 (242)
T ss_dssp TEEEEEECSCCGGGCEEEEEEEEEECSSTTCEEEEECCCEEEEEESSCCCSCCSCBCCC---------------------
T ss_pred cEEEEEECCCCcccCEEEEEeeecCCccccccceeEcCcEEEEEcccccCCCcCCCceE---------------------
Confidence 356899999999999999999998631 1 11235677765432 111000
Q ss_pred CCceeeccccccccccccEEEEcCCeEEEEEEEeee-cC-CceEEEECCe-ecCCCC-ceEEEEcCC---eEEEEEcCce
Q psy7039 347 GTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGR-PK-PTPIWTVNGD-EVSPDG-RIKFETSEN---QTIYRNKSAK 419 (516)
Q Consensus 347 ~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~-p~-~~i~W~~~~~-~l~~~~-~~~~~~~~~---~~~l~i~~~~ 419 (516)
..+....+..|+.+.|.|.+.|. |. +.+.|++++. .+.... .......+. .+.|.|....
T Consensus 137 -------------~~p~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~ 203 (242)
T 1hxm_B 137 -------------FLPSIAETKLQKAGTYLCLLEKFFPDVIKIHWEEKKSNTILGSQEGNTMKTNDTYMKFSWLTVPEKS 203 (242)
T ss_dssp -------------CCCCGGGGGSSSCEEEEEEEEEESSCCEEEEEEESSSCCCCCCEECCCEECSSSEEEEEEEEECTGG
T ss_pred -------------ECCChhhcccCCCceEEEEEeeEECCCeEEEEEcCCCEeecCccccceecCCCcEEEEEEEEEcccc
Confidence 00111123468899999999987 54 5899999986 453221 000111111 1468887664
Q ss_pred ecCCceEEEEEEEcCCCceeEEEEEEE
Q psy7039 420 RATDSGSYTIQLVNTVGSDSASCKVYV 446 (516)
Q Consensus 420 ~~~~~g~y~c~a~n~~G~~s~s~~l~v 446 (516)
. + |.|+|.|.|..+.......+.+
T Consensus 204 ~--~-g~y~C~v~n~~~~~~~~~~~~~ 227 (242)
T 1hxm_B 204 L--D-KEHRCIVRHENNKNGVDQEIIF 227 (242)
T ss_dssp G--G-SCEEEEEEETTSGGGSCEEEEE
T ss_pred C--C-CEEEEEEEeCCCCCCceeEeec
Confidence 3 3 9999999999988766666655
|
| >2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.30 E-value=8e-12 Score=110.49 Aligned_cols=128 Identities=15% Similarity=0.209 Sum_probs=95.3
Q ss_pred CcEEEeCCCcCCCeEEEEEEEecCCCCCCCCCCCcceEeccCCCCCccccC-cccceEEecCCeEEEEEeeeeccccccC
Q psy7039 69 ETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAPRIDRS-TLNDVKIKAGQSFSFDVKEFRELSYTKS 147 (516)
Q Consensus 69 ~~~~~i~~l~~~~~y~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~p~~~~~-~~~~~~v~~g~~~~l~C~~~~~~~~~~~ 147 (516)
..+|.|.+++..|.|.|+|.+.+..+..... ....+.+. .+|.+... ......+.+|+.+.|.|.+.
T Consensus 56 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~-~~~~l~v~---~~p~~~~~~~~~~~~~~~g~~v~l~C~~~-------- 123 (189)
T 2v5t_A 56 NNNLQILNINKSDEGIYRCEGRVEARGEIDF-RDIIVIVN---VPPAISMPQKSFNATAERGEEMTFSCRAS-------- 123 (189)
T ss_dssp TSCEEETTCCGGGCEEEEEEEEETTTTEEEE-EEEEEEEE---EEEEEECSCCEEEEETTSCCCEEEECEEE--------
T ss_pred CCCEEEeeCCHhHCcEEEEEEEEcCCCceEE-EEEEEEec---CCCCcccccccccccccCCCcEEEEEEEc--------
Confidence 4579999999999999999999876432211 11122221 23444311 22246678899999999999
Q ss_pred ccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEE
Q psy7039 148 PLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAH 227 (516)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~ 227 (516)
+.|.+.+.|++++..+....++.+. .....|.|.+++.+|+|.|+|.+.|..|.......
T Consensus 124 ------------------g~p~~~v~W~~~g~~~~~~~~~~~~--~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~ 183 (189)
T 2v5t_A 124 ------------------GSPEPAISWFRNGKLIEENEKYILK--GSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAF 183 (189)
T ss_dssp ------------------EESCCEEEEEETTEECCCSSSEEEE--TTTTEEEECSCCGGGCEEEEEEEEETTEEEEEEEE
T ss_pred ------------------cCCCCeEEEEECCEECcCCCcEEEe--cCCCEEEEcCCChhhCeeEEEEEEeCCCceeEEEE
Confidence 8899999999999998877666553 34568999999999999999999999988776554
Q ss_pred e
Q psy7039 228 V 228 (516)
Q Consensus 228 ~ 228 (516)
+
T Consensus 184 l 184 (189)
T 2v5t_A 184 L 184 (189)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >2dm4_A Sortilin-related receptor; beta-sandwich, sorting protein-related receptor containing LDLR class A repeats, sorla; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.30 E-value=1.8e-11 Score=97.85 Aligned_cols=90 Identities=23% Similarity=0.389 Sum_probs=75.2
Q ss_pred CCCCCCCCCcceEEEe--eeCCeeEEEecCCCCCCCCceeceEEEEEeCCC-CeEEeEEeecCCcEEEeCCCcCCCeEEE
Q psy7039 9 NPFDEPGKPTDLEATD--WDKDHVDLQWTPPISDGGSPITGYVVEMKDKTG-NWEKAVVVPAGETSCTVPGLIEGETYQF 85 (516)
Q Consensus 9 ~~~~~p~~p~~l~~~~--~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~-~~~~~~~~~~~~~~~~i~~l~~~~~y~~ 85 (516)
...+.|++|.+|++.. ++.++|.|+|.+|. +.++.|.+|.|+|+..+. .|... ....+.+.|.+|++++.|.|
T Consensus 3 s~~~~P~~P~~l~~~~~~~~~~sv~l~W~~p~-~~~g~i~~Y~v~~~~~~~~~~~~~---~~~~~~~~l~~L~p~t~Y~~ 78 (108)
T 2dm4_A 3 SGSSGPDAPRNLQLSLPREAEGVIVGHWAPPI-HTHGLIREYIVEYSRSGSKMWASQ---RAASNFTEIKNLLVNTLYTV 78 (108)
T ss_dssp CCCCCTTSCEEEEEECCTTCSSCEEEEEECCS-CCSSCEEEEEEEEEETTCSCCEEE---EESSSEEEECSCCSSCEEEE
T ss_pred CCCCCCcCCcCeEEEEeccCCCEEEEEEcCCC-CCCCcEEEEEEEEEECCCCCeEEe---cCCccEEEeCCCCCCCEEEE
Confidence 3567899999998876 57889999999986 566779999999998766 67654 23577999999999999999
Q ss_pred EEEEecCCCCCCCCCCC
Q psy7039 86 QVRAVNAAGPGEASKPT 102 (516)
Q Consensus 86 ~~~a~n~~g~~~~s~~~ 102 (516)
+|+|.|..|.+.++...
T Consensus 79 ~V~A~n~~G~g~~S~~~ 95 (108)
T 2dm4_A 79 RVAAVTSRGIGNWSDSK 95 (108)
T ss_dssp EEEEEESSCEEEECCCE
T ss_pred EEEEECCCceeCCCCCE
Confidence 99999999988776543
|
| >2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.30 E-value=1.3e-11 Score=108.70 Aligned_cols=153 Identities=13% Similarity=0.145 Sum_probs=97.2
Q ss_pred ccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecC-cCceeeEEeeC-Ceeec------------cC--
Q psy7039 121 LNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLS-EPFLNHGWSIN-GQVCQ------------IG-- 184 (516)
Q Consensus 121 ~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~p~~~i~W~~~-~~~~~------------~~-- 184 (516)
...+.+.+|+++.|.|.+. + .+.+.|.|++. +..+. ..
T Consensus 6 ~~~v~v~~G~~vtL~c~~~--------------------------~~~~~~~i~W~k~~~~~i~~~~~~~~~~~~~~~~~ 59 (180)
T 2dru_A 6 VPNVNAITGSNVTLTILKH--------------------------PLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFK 59 (180)
T ss_dssp CCEEEEETTSCEEECCCSS--------------------------CCCSCSEEEEESSSSCEEEEECSSSCEEECSSTTT
T ss_pred cceEEEEeCCCEEEeCCCC--------------------------CCCceeEEEEEecCCeEEEEEECCCCeeEcchhcC
Confidence 3457899999999999986 3 34567888773 22211 11
Q ss_pred CceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEEeeceeee--eccccCCceEEEEEEEEccCCCCCceec
Q psy7039 185 GRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVTGTEFT--DNNVHEGKAYEYRVSAVNAAGTEKPKIS 262 (516)
Q Consensus 185 ~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~~~~~~~--~~~l~~g~~~~~~~~~~~~~g~p~p~i~ 262 (516)
.|+.+ .....+|.|.+++.+|+|.|+|.+.+.. .......+.+.... ..-...+..+.+.|.+. .| |.|.+.
T Consensus 60 ~R~~l--~~~~~sL~I~~v~~~D~G~Y~C~v~~~~-~~~~~~~L~V~~~~~~P~i~~~~~~v~L~C~~~--~g-p~p~i~ 133 (180)
T 2dru_A 60 DRVDL--DKTNGALRIYNVSKEDRGDYYMRMLHET-EDQWKITMEVYEMVSKPMIYWECSNATLTCEVL--EG-TDVELK 133 (180)
T ss_dssp TTEEE--CTTTCCEEECSCCGGGCEEEEEEEESSS-EEEEEEEEEEECCCCCCEEEEEGGGTEEEEECS--SC-TTCEEE
T ss_pred CeEEE--eCCCccEEEcCCCHHHCeEEEEEEEcCC-eEEEEEEEEEECCCCCCEEEecCCCEEEEEEeC--CC-CCCEEE
Confidence 34444 2345689999999999999999998765 33333333322110 00011335678888872 44 899999
Q ss_pred ccccccceEEEEEecceeeEEEccCCCCCceEEEEEEEecCCCcceeEE
Q psy7039 263 LDALIGKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIE 311 (516)
Q Consensus 263 W~~~~~~~~~~~~~~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~~~~ 311 (516)
|.+.... .. ......|.+.. .+|+|.|+|.|.|..+.......
T Consensus 134 W~~~~~~-l~---~~~~~~l~~~~--~~d~g~Y~C~a~N~~~~~~~~~~ 176 (180)
T 2dru_A 134 LYQGKEH-LR---SLRQKTMSYQW--TNLRAPFKCKAVNRVSQESEMEV 176 (180)
T ss_dssp EEETTEE-EE---EESSSEEEEEC--SCCSSCEEEEEEETTEEEEEEEC
T ss_pred EEECCeE-Cc---CCCCCEEEEEE--hhcCccEEEEEecCcCcccccee
Confidence 9763321 11 22344566533 78999999999999887655443
|
| >1x5h_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 | Back alignment and structure |
|---|
Probab=99.29 E-value=5.6e-12 Score=104.83 Aligned_cols=102 Identities=24% Similarity=0.432 Sum_probs=84.6
Q ss_pred CcceeccCCCCCCC-CCcceEEEeeeCCeeEEEecCCCCC-CCCceeceEEEEEeCCC-CeEEeEEeecCCcEEEeCCCc
Q psy7039 2 DHSVLIKNPFDEPG-KPTDLEATDWDKDHVDLQWTPPISD-GGSPITGYVVEMKDKTG-NWEKAVVVPAGETSCTVPGLI 78 (516)
Q Consensus 2 ~~~~~~~~~~~~p~-~p~~l~~~~~~~~~v~l~W~~p~~~-~~~~i~~Y~v~~~~~~~-~~~~~~~~~~~~~~~~i~~l~ 78 (516)
|+.+.++++.+.|. +|.++++..++.++|.|+|.+|..+ .++.|.+|+|+|+..+. .|..........++++|.+|+
T Consensus 6 S~~~~~~T~~~~P~~~P~~l~~~~~~~~sv~l~W~~p~~~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~ 85 (132)
T 1x5h_A 6 SGDVAVRTLSDVPSAAPQNLSLEVRNSKSIMIHWQPPAPATQNGQITGYKIRYRKASRKSDVTETLVSGTQLSQLIEGLD 85 (132)
T ss_dssp CCCCCCCCCCSSCCCCCEEEEEECCSSSEEEEEEECCCTTTCCSCEEEEBCEEEETTEEEEEECCBCCTTCCEEEEECCC
T ss_pred CCCEEEeCCCCCCCCCCeeeEEEeCCCCEEEEEEeCCCCcCCCceEeEEEEEEEECCCCCccEEEEeCCCccEEEeCCCC
Confidence 67788899999988 8899999999999999999998642 45679999999998765 444333355678999999999
Q ss_pred CCCeEEEEEEEecCCCCCCCCCCCc
Q psy7039 79 EGETYQFQVRAVNAAGPGEASKPTA 103 (516)
Q Consensus 79 ~~~~y~~~~~a~n~~g~~~~s~~~~ 103 (516)
+++.|.|+|+|.|..|.+.++....
T Consensus 86 p~t~Y~~~V~A~n~~G~g~~S~~~~ 110 (132)
T 1x5h_A 86 RGTEYNFRVAALTINGTGPATDWLS 110 (132)
T ss_dssp SSCEEEEECEEEETTEEEEECCCEE
T ss_pred CCCEEEEEEEEEcCCccCCCCcCEE
Confidence 9999999999999999887765443
|
| >3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane, immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B* 3q5t_A | Back alignment and structure |
|---|
Probab=99.29 E-value=5.4e-11 Score=109.83 Aligned_cols=71 Identities=18% Similarity=0.216 Sum_probs=49.6
Q ss_pred EEcCCeEEEEEEEee-ecCC-ceEEEECCeecCCCCceE---EEEcCCe----EEEEEcCceecCC-ceEEEEEEEcCCC
Q psy7039 367 VLAGEEFTITVPFSG-RPKP-TPIWTVNGDEVSPDGRIK---FETSENQ----TIYRNKSAKRATD-SGSYTIQLVNTVG 436 (516)
Q Consensus 367 v~~g~~~~l~C~~~g-~p~~-~i~W~~~~~~l~~~~~~~---~~~~~~~----~~l~i~~~~~~~~-~g~y~c~a~n~~G 436 (516)
+..|+.+.|.|.+.| .|.+ .+.|+++|..+....... .....+. +.|.|..... .| .|.|+|.|.|...
T Consensus 134 ~~~g~~v~L~C~~~g~~P~~~~v~W~~~g~~l~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~-~d~~g~YtC~v~~~~~ 212 (240)
T 3q5y_A 134 IANKQKATLVCLARGFFPDHVELSWWVNGKEVHSGVSTDPQAYKESNYSYSLSSRLRVSATFW-HNPRNHFRCQVQFHGL 212 (240)
T ss_dssp HHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECTTEEECSSCEEEETTEEEEEEEEEEEHHHH-SCTTCEEEEEEEECCB
T ss_pred cccCCceEEEEEEeeEECCCeEEEEEECCEECcCcEecCCceeeCCCCCEEEEEEEEECHHHh-ccCCCEEEEEEEcCCC
Confidence 346889999999998 4555 789999998875432211 1111221 3588888888 77 7799999999865
Q ss_pred ce
Q psy7039 437 SD 438 (516)
Q Consensus 437 ~~ 438 (516)
..
T Consensus 213 ~~ 214 (240)
T 3q5y_A 213 SE 214 (240)
T ss_dssp CT
T ss_pred CC
Confidence 53
|
| >2gjj_A A21 single-chain antibody fragment against ERBB2; IG family, SCFV, immune system; 2.10A {Mus musculus} PDB: 3h3b_C | Back alignment and structure |
|---|
Probab=99.29 E-value=4.1e-11 Score=112.47 Aligned_cols=172 Identities=15% Similarity=0.120 Sum_probs=108.8
Q ss_pred ccccCCceEEEEEEEEccCCCC------Cceecccccc-------------------cceEEEEEecceeeEEEccCCCC
Q psy7039 236 NNVHEGKAYEYRVSAVNAAGTE------KPKISLDALI-------------------GKRIKEFVTSTTASLNIKNSVRK 290 (516)
Q Consensus 236 ~~l~~g~~~~~~~~~~~~~g~p------~p~i~W~~~~-------------------~~~~~~~~~~~~~~l~i~~l~~~ 290 (516)
..+.+|+.+.|.|.+ .+.+ .+.+.|.+.. ..++.+........|.|.+++.+
T Consensus 15 v~v~~G~~v~L~C~~---~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~L~I~~v~~~ 91 (264)
T 2gjj_A 15 LPVSVGEKVTMTCKS---SQTLLYSNNQKNYLAWYQQKPGQSPKLLISWAFTRKSGVPDRFTGSGSGTDFTLTIGSVKAE 91 (264)
T ss_dssp EEEETTCCEEEEEEE---SSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGG
T ss_pred EEecCCCcEEEEeEc---CCcccccccCCceEEEEEECCCCCcEEEEEecccCCCCCCccEEEecCCCEEEEEECCCCHH
Confidence 356789999999998 6665 6789996521 12333333445679999999999
Q ss_pred CceEEEEEEEecCCC-cceeEEEEEecCCCCC----CCCceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccE
Q psy7039 291 DSGIYKIEAKNDYGI-DMADIEVVVVSKPGPP----TGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDM 365 (516)
Q Consensus 291 d~g~y~c~a~n~~g~-~~~~~~l~v~~~p~~p----~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~ 365 (516)
|+|.|.|.+.|..+. ......|.|...|..- ..+.. .......+.+ ......
T Consensus 92 DsG~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~-~~~~~~~~~~----------------------~~~~~~ 148 (264)
T 2gjj_A 92 DLAVYYCQQYSNYPWTFGGGTRLEIKRGGGGSGGGGSGGGG-SGGGGSEVQL----------------------QQSGPE 148 (264)
T ss_dssp GCEEEEEEECSSSSCEECCCEEEEEECC--------------------CCEE----------------------EECCCE
T ss_pred HCEEEEEEEecCCccEecCCEEEEEEcCCcccccccccccc-cccccCcEEE----------------------eCCCCE
Confidence 999999999987543 1233567776553100 00000 0000000000 011224
Q ss_pred EEEcCCeEEEEEEEeeecC--CceEEEECC--ee---cC--------------CCCceEEEE--cCCeEEEEEcCceecC
Q psy7039 366 TVLAGEEFTITVPFSGRPK--PTPIWTVNG--DE---VS--------------PDGRIKFET--SENQTIYRNKSAKRAT 422 (516)
Q Consensus 366 ~v~~g~~~~l~C~~~g~p~--~~i~W~~~~--~~---l~--------------~~~~~~~~~--~~~~~~l~i~~~~~~~ 422 (516)
.+.+|+.+.|.|.+.+.+. +.+.|+++. .. +. ...++.+.. ......|.|.++.. .
T Consensus 149 ~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~-~ 227 (264)
T 2gjj_A 149 VVKTGASVKISCKASGYSFTGYFINWVKKNSGKSPEWIGHISSSYATSTYNQKFKNKAAFTVDTSSSTAFMQLNSLTS-E 227 (264)
T ss_dssp EECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCCEEEEEEETTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCCG-G
T ss_pred EEcCCCcEEEEEEEeCCccCCeEEEEEEECCCCCcEEEEEEeccCcccccCcccCCceEEEEcCCCCEEEEEECcCCc-c
Confidence 6889999999999988764 789999863 21 10 023444432 33567899999999 9
Q ss_pred CceEEEEEEEcC
Q psy7039 423 DSGSYTIQLVNT 434 (516)
Q Consensus 423 ~~g~y~c~a~n~ 434 (516)
|+|.|.|.|.|.
T Consensus 228 DsG~Y~C~a~n~ 239 (264)
T 2gjj_A 228 DSADYYCVRSGN 239 (264)
T ss_dssp GCEEEEEEEECS
T ss_pred cCEEEEEEEecC
Confidence 999999999995
|
| >1uen_A KIAA0343 protein; immunoglobulin-like beta-sandwich fold, fibronectin type III, NG-CAM related cell adhesion molecule, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1 | Back alignment and structure |
|---|
Probab=99.29 E-value=1.7e-11 Score=100.80 Aligned_cols=101 Identities=21% Similarity=0.278 Sum_probs=82.2
Q ss_pred CCcceeccCCCCCC-CCCcceEEEeeeCCeeEEEecCCCC-CCCCceeceEEEEEeCCC-Ce-------EEeEEeecCCc
Q psy7039 1 MDHSVLIKNPFDEP-GKPTDLEATDWDKDHVDLQWTPPIS-DGGSPITGYVVEMKDKTG-NW-------EKAVVVPAGET 70 (516)
Q Consensus 1 ~~~~~~~~~~~~~p-~~p~~l~~~~~~~~~v~l~W~~p~~-~~~~~i~~Y~v~~~~~~~-~~-------~~~~~~~~~~~ 70 (516)
.|+.|.+++.++.| ++|.+|++..+++++|.|+|.+|.. ..++.|.+|.|+|+..+. .+ ..........+
T Consensus 1 gS~~v~~~T~~~~P~~~P~~l~~~~~~~~sv~l~W~~p~~~~~~g~i~gY~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (125)
T 1uen_A 1 GSSGSSGHSGEDLPMVAPGNVRVNVVNSTLAEVHWDPVPLKSIRGHLQGYRIYYWKTQSSSKRNRRHIEKKILTFQGSKT 80 (125)
T ss_dssp CCCCCCCCSCCCCCCCCCSSCEEEEEETTEEEEECCCCCHHHHCSCEEEEEEEEEEESCCCCSTTCCCCEEEEEEESSCS
T ss_pred CCccEEEECCCCCCCCCCceeEEEecCCcEEEEEEcCCCchhcCceEeEEEEEEEECCCCcccccccccceEEEecCCcc
Confidence 37889999999998 7999999999999999999999842 234579999999987654 22 12333456789
Q ss_pred EEEeCCCcCCCeEEEEEEEecCCCCCCCCCC
Q psy7039 71 SCTVPGLIEGETYQFQVRAVNAAGPGEASKP 101 (516)
Q Consensus 71 ~~~i~~l~~~~~y~~~~~a~n~~g~~~~s~~ 101 (516)
++.|.+|++++.|.|+|+|.|..|.+..+..
T Consensus 81 ~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~ 111 (125)
T 1uen_A 81 HGMLPGLEPFSHYTLNVRVVNGKGEGPASPD 111 (125)
T ss_dssp EEEEESCCSSCEEEEEEEEEESSCEEEECCC
T ss_pred EEEeCCCCCCCEEEEEEEEecCCCCCCCCCC
Confidence 9999999999999999999999998766543
|
| >1x5z_A Receptor-type tyrosine-protein phosphatase delta; fibronectin type III domain containing protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 | Back alignment and structure |
|---|
Probab=99.29 E-value=9.1e-12 Score=100.79 Aligned_cols=96 Identities=23% Similarity=0.388 Sum_probs=80.3
Q ss_pred CcceeccCCCCCCCCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCC-CeEEeEEeecCCcEEEeCCCcCC
Q psy7039 2 DHSVLIKNPFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTG-NWEKAVVVPAGETSCTVPGLIEG 80 (516)
Q Consensus 2 ~~~~~~~~~~~~p~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~-~~~~~~~~~~~~~~~~i~~l~~~ 80 (516)
|+.+.+++..+.|++|.++++..++.++|.|+|.+|. + + .|.+|+|+|+..+. .|.... ....++++|.+|+++
T Consensus 6 S~~~~~~t~~~~P~~P~~l~~~~~~~~sv~l~W~~p~-~-~-~i~~Y~v~~~~~~~~~~~~~~--~~~~~~~~i~~L~p~ 80 (115)
T 1x5z_A 6 SGDIQVITQTGVPGQPLNFKAEPESETSILLSWTPPR-S-D-TIANYELVYKDGEHGEEQRIT--IEPGTSYRLQGLKPN 80 (115)
T ss_dssp CCCCCCCCCSCCCCCCEEEEEECSSSSEEEEEEECCS-C-C-CCCEEEECBEESSSCCCBCCE--ECSSSEEEEECCCTT
T ss_pred CCCEEEECCCCCCCCCccCEeeeCCCCEEEEEEcCCC-C-C-CccEEEEEEEeCCCCCceEEe--cCCCcEEEECCCCCC
Confidence 5678889999999999999999999999999999984 2 2 79999999998665 553222 245799999999999
Q ss_pred CeEEEEEEEecCCCCCCCCCCC
Q psy7039 81 ETYQFQVRAVNAAGPGEASKPT 102 (516)
Q Consensus 81 ~~y~~~~~a~n~~g~~~~s~~~ 102 (516)
+.|.|+|+|.|..|.+.++...
T Consensus 81 t~Y~~~V~A~n~~G~g~~S~~~ 102 (115)
T 1x5z_A 81 SLYYFRLAARSPQGLGASTAEI 102 (115)
T ss_dssp CEEEECEEEECSSCEEEECCCE
T ss_pred CeEEEEEEEECCCcccCCCcCE
Confidence 9999999999999987766543
|
| >3fku_X Neutralizing antibody F10; influenza, hemagglutinin, SCFV, F membrane, envelope protein, fusion protein, membrane, trans virion; HET: NAG BMA; 3.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.29 E-value=4.1e-11 Score=113.50 Aligned_cols=189 Identities=15% Similarity=0.112 Sum_probs=113.4
Q ss_pred eccccCCceEEEEEEEEccCCC--CCceecccccc-c-----------------------ceEEEEE--ecceeeEEEcc
Q psy7039 235 DNNVHEGKAYEYRVSAVNAAGT--EKPKISLDALI-G-----------------------KRIKEFV--TSTTASLNIKN 286 (516)
Q Consensus 235 ~~~l~~g~~~~~~~~~~~~~g~--p~p~i~W~~~~-~-----------------------~~~~~~~--~~~~~~l~i~~ 286 (516)
...+.+|+.+.|.|.+ .+. +.+.+.|.+.. + .++.+.. ......|.|.+
T Consensus 9 ~~~v~~G~~v~L~C~~---~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~ 85 (280)
T 3fku_X 9 AEVKKPGSSVKVSCTS---SEVTFSSFAISWVRQAPGQGLEWLGGISPMFGTPNYAQKFQGRVTITADQSTRTAYMDLRS 85 (280)
T ss_dssp CCEECTTCCEEEEEEE---CCSCCTTSCEEECCBCSSSCCCCCEEECTTTCCEEECGGGTTTCEEEEETTTTEEEEEECS
T ss_pred CEEECCCCcEEEEEEe---eccCCCCeEEEEEEeCCCCCCEEEEEEeccCCccccCcccCCcEEEEEeCCCCEEEEEECC
Confidence 3456789999999997 443 56788886411 0 1222221 23345899999
Q ss_pred CCCCCceEEEEEEEecC---------CCcceeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccc
Q psy7039 287 SVRKDSGIYKIEAKNDY---------GIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKIT 357 (516)
Q Consensus 287 l~~~d~g~y~c~a~n~~---------g~~~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~ 357 (516)
++.+|+|.|+|.+.|.. ........|.|...+...... ...-.+.++.
T Consensus 86 v~~~DsG~Y~C~~~~~~~~~g~~~~~~~~~~~~~L~V~~~~~~~~~~---------~~~~~~~~~~-------------- 142 (280)
T 3fku_X 86 LRSEDTAVYYCARSPSYICSGGTCVFDHWGQGTLVTVSSGGGGSGGG---------GSGGGGIQPG-------------- 142 (280)
T ss_dssp CCSTTCEECCEEECSSSSSSSTTCCCCEECCCCEEEECC-----------------------CCCS--------------
T ss_pred CChhhCEEEEEEEecCCccccccccccEECCCEEEEEcCCCCccCCC---------CCCceEeeeE--------------
Confidence 99999999999999861 112223455554411000000 0000000000
Q ss_pred cccccccEEEEcCCeEEEEEEEee-ec-CCceEEEECC--eecC------------CCCceEEEEcCCeEEEEEcCceec
Q psy7039 358 SDLSIRDMTVLAGEEFTITVPFSG-RP-KPTPIWTVNG--DEVS------------PDGRIKFETSENQTIYRNKSAKRA 421 (516)
Q Consensus 358 ~~~~~~~~~v~~g~~~~l~C~~~g-~p-~~~i~W~~~~--~~l~------------~~~~~~~~~~~~~~~l~i~~~~~~ 421 (516)
....+. ..+.+|+.++|.|.+.+ .+ .+.+.|++.. ..+. ...++..........|+|.++..
T Consensus 143 v~~~p~-~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~- 220 (280)
T 3fku_X 143 LTQPPS-VSKGLRQTATLTCTGNSNNVGNQGAAWLQQHQGHPPKLLSYRNNDRPSGISERFSASRSGNTASLTITGLQP- 220 (280)
T ss_dssp BBCCSE-EEECTTCCEEEEEECCCCCCCTTCCEEEEECSSSCCEESCCTTCCCCSSSCTTEEEEEETTEEEEEECSCCG-
T ss_pred EEeCCc-EEEecCCCEEEEEEecCCCCCCceEEEEEECCCCCCEEEEEeccccCCCCCCCEEEEccCCEEEEEECCCCH-
Confidence 001223 77899999999999988 44 3689998732 2111 13567776666777899999999
Q ss_pred CCceEEEEEEEcCCCc---eeEEEEEEEecCCC
Q psy7039 422 TDSGSYTIQLVNTVGS---DSASCKVYVVDKPS 451 (516)
Q Consensus 422 ~~~g~y~c~a~n~~G~---~s~s~~l~v~~~p~ 451 (516)
.|+|.|.|.+.|..+. ......|+|...|.
T Consensus 221 ~DsG~Y~C~~~~~~~~~~~~g~~t~l~V~~~~~ 253 (280)
T 3fku_X 221 EDEADYYCSTWDSSLSAVVFGGGTKLTVLGQPK 253 (280)
T ss_dssp GGCSEEEEEEEETTTTEEEEBCCCEEEEC----
T ss_pred HHCEEEEEEEecCCCCceEECCCEEEEECCCCC
Confidence 9999999999998632 23335677765544
|
| >1x5i_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 | Back alignment and structure |
|---|
Probab=99.29 E-value=3e-11 Score=99.43 Aligned_cols=97 Identities=18% Similarity=0.258 Sum_probs=79.7
Q ss_pred CcceeccCCCC------CCCCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCCCeEEeEEeecCCcEEEeC
Q psy7039 2 DHSVLIKNPFD------EPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVVVPAGETSCTVP 75 (516)
Q Consensus 2 ~~~~~~~~~~~------~p~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~i~ 75 (516)
|+.+.++++++ .|++|.+|++..+. ++|.|+|.+|. +.++.|.+|.|+|+.....+. ........++++|.
T Consensus 10 S~~~~~~T~~~~~~~~~~P~~P~~l~~~~~~-~sv~l~W~~P~-~~~g~i~~Y~v~y~~~~~~~~-~~~~~~~~~~~~i~ 86 (126)
T 1x5i_A 10 TDWLSAETFESDLDETRVPEVPSSLHVRPLV-TSIVVSWTPPE-NQNIVVRGYAIGYGIGSPHAQ-TIKVDYKQRYYTIE 86 (126)
T ss_dssp CCCCCSCCCCTTSBCSSCCCSCSEEEEEEET-TEEEEEEECCS-CTTBCCCEEEEEECSSCGGGE-EEECCTTCCEEEEC
T ss_pred CCCEEeECccccCccCCCCCCCCeeEEEecC-CEEEEEEcCCC-CCCCCEeEEEEEEEcCCCCce-EEEeCCCeeEEEEe
Confidence 56788889987 99999999999886 99999999996 445679999999985332332 22345678999999
Q ss_pred CCcCCCeEEEEEEEecCCCCCCCCCC
Q psy7039 76 GLIEGETYQFQVRAVNAAGPGEASKP 101 (516)
Q Consensus 76 ~l~~~~~y~~~~~a~n~~g~~~~s~~ 101 (516)
+|++++.|.|+++|.|..|.+.++..
T Consensus 87 ~L~p~t~Y~~~V~A~n~~G~g~~s~~ 112 (126)
T 1x5i_A 87 NLDPSSHYVITLKAFNNVGEGIPLYE 112 (126)
T ss_dssp SCCSSCEECCEEEEECSSCBCCCCCC
T ss_pred CCCCCCEEEEEEEEEeCCccCcceee
Confidence 99999999999999999999887653
|
| >2e7h_A Ephrin type-B receptor 4; FN3 domain, tyrosine- protein kinase receptor HTK, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.29 E-value=2.4e-11 Score=97.26 Aligned_cols=91 Identities=23% Similarity=0.349 Sum_probs=75.6
Q ss_pred cCCCCCCCCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCC-C---CeEEeEEeecCCcEEEeCCCcCCCeE
Q psy7039 8 KNPFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKT-G---NWEKAVVVPAGETSCTVPGLIEGETY 83 (516)
Q Consensus 8 ~~~~~~p~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~-~---~~~~~~~~~~~~~~~~i~~l~~~~~y 83 (516)
.+.++.|++|.+|++..+++++|.|+|.+|. ..++.|.+|.|+|+..+ . .|... ....++++|.+|+++..|
T Consensus 2 tT~~~~P~~p~~l~~~~~~~~sv~l~W~~p~-~~~g~i~~Y~v~~~~~~~~~~~~~~~~---~~~~~~~~i~~L~p~t~Y 77 (109)
T 2e7h_A 2 SSGSSGPPAVSDIRVTRSSPSSLSLAWAVPR-APSGAVLDYEVKYHEKGAEGPSSVRFL---KTSENRAELRGLKRGASY 77 (109)
T ss_dssp CSSCCSSCCCCCCEEEEEETTEEEEECCCCC-CSSSCCCEEEEEEEETTCCSTTTSEEE---EESSSEEEEESCCTTSCE
T ss_pred CCCCCCCCCCCccEEEecCCCEEEEEeCCCC-CCCCcEeEEEEEEEECCCCCCceeEEE---ccCCCEEEECCCCCCCeE
Confidence 3567899999999999999999999999986 55567999999998865 2 33322 335779999999999999
Q ss_pred EEEEEEecCCCCCCCCCCC
Q psy7039 84 QFQVRAVNAAGPGEASKPT 102 (516)
Q Consensus 84 ~~~~~a~n~~g~~~~s~~~ 102 (516)
.|+|+|.|..|.+.++...
T Consensus 78 ~~~V~A~n~~G~g~~S~~~ 96 (109)
T 2e7h_A 78 LVQVRARSEAGYGPFGQEH 96 (109)
T ss_dssp EEEEEEECSSCBCCCCSCE
T ss_pred EEEEEEEeCCccCCCCCCE
Confidence 9999999999988876543
|
| >2djs_A Ephrin type-B receptor 1; tyrosine-protein kinase receptor EPH-2, NET, HEK6, ELK, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 | Back alignment and structure |
|---|
Probab=99.29 E-value=1.6e-11 Score=98.20 Aligned_cols=93 Identities=20% Similarity=0.313 Sum_probs=76.5
Q ss_pred cCCCCCCCCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCC-CeEEeEEeecCCcEEEeCCCcCCCeEEEE
Q psy7039 8 KNPFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTG-NWEKAVVVPAGETSCTVPGLIEGETYQFQ 86 (516)
Q Consensus 8 ~~~~~~p~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~-~~~~~~~~~~~~~~~~i~~l~~~~~y~~~ 86 (516)
.++++.|++|.+|++..+++++|.|+|.+|. +.++.|.+|+|+|+..+. .|.. .......++++|.+|+++..|.|+
T Consensus 2 tT~~~~P~~P~~l~~~~~~~~sv~l~W~~p~-~~~g~i~~Y~v~~~~~~~~~~~~-~~~~~~~~~~~l~~L~p~t~Y~~~ 79 (108)
T 2djs_A 2 SSGSSGPSTVPIMHQVSATMRSITLSWPQPE-QPNGIILDYEIRYYEKEHNEFNS-SMARSQTNTARIDGLRPGMVYVVQ 79 (108)
T ss_dssp CSCCCCCCCCSCCEEEEECSSEEEEECCCCS-CCSSCEEEEEEEEEETTSCSTTC-EEEEESSSEEEEESCCTTCEEEEE
T ss_pred ccCCCCCCCCcceEEEecCCCEEEEEECCCC-CCCCeEEEEEEEEEECCCCCcce-eEEecCccEEEEcCCCCCCEEEEE
Confidence 4678899999999999999999999999985 445569999999998665 3321 123357899999999999999999
Q ss_pred EEEecCCCCCCCCCCC
Q psy7039 87 VRAVNAAGPGEASKPT 102 (516)
Q Consensus 87 ~~a~n~~g~~~~s~~~ 102 (516)
|+|.|..|.+.++...
T Consensus 80 V~A~n~~G~g~~S~~~ 95 (108)
T 2djs_A 80 VRARTVAGYGKFSGKM 95 (108)
T ss_dssp EEEEESSCEEEECCCE
T ss_pred EEEEeCCEECCCCCCE
Confidence 9999999988766543
|
| >3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.29 E-value=1.6e-11 Score=97.08 Aligned_cols=89 Identities=27% Similarity=0.381 Sum_probs=77.8
Q ss_pred CCccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEeec
Q psy7039 113 APRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTT 192 (516)
Q Consensus 113 ~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~ 192 (516)
+|.+. ..+..+.+.+|+.+.|.|.+. +.|.+.+.|++++..+....++.+...
T Consensus 8 ~P~~~-~~~~~~~v~~G~~v~l~C~~~--------------------------g~p~p~i~W~k~~~~~~~~~~~~~~~~ 60 (103)
T 3qp3_A 8 APRIT-LRMRSHRVPCGQNTRFILNVQ--------------------------SKPTAEVKWYHNGVELQESSKIHYTNT 60 (103)
T ss_dssp EEEEE-ECCCCEEEETTCCEEEEEEEE--------------------------EESCCEEEEEETTEECCCCSSEEEEEE
T ss_pred CCEEE-eCCcceEEeCCCeEEEEEEEE--------------------------ecCCCEEEEEECCEECCCCCCEEEEEC
Confidence 56665 556778999999999999999 999999999999999988888888877
Q ss_pred CCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEEe
Q psy7039 193 KSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHV 228 (516)
Q Consensus 193 ~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~ 228 (516)
+...+|.|.+++.+|+|.|+|.+.|..|.......+
T Consensus 61 ~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l 96 (103)
T 3qp3_A 61 SGVLTLEILDCHTDDSGTYRAVCTNYKGEASDYATL 96 (103)
T ss_dssp TTEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred CCEEEEEEcCCCcccCEEEEEEEEeCCCcEEEEEEE
Confidence 788899999999999999999999998887655543
|
| >1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A | Back alignment and structure |
|---|
Probab=99.28 E-value=1.5e-11 Score=95.22 Aligned_cols=80 Identities=16% Similarity=0.285 Sum_probs=69.6
Q ss_pred CCCccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEee
Q psy7039 112 LAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQT 191 (516)
Q Consensus 112 ~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~ 191 (516)
.+|.|. ..+.++.+.+|+.+.|.|.+. +. .+.+.|++++..+....++.+..
T Consensus 4 ~~~~~~-~~~~~~~v~~G~~v~l~C~v~--------------------------~~-~~~v~W~k~g~~i~~~~~~~i~~ 55 (93)
T 1waa_A 4 ALIEVE-KPLYGVEVFVGETAHFEIELS--------------------------EP-DVHGQWKLKGQPLAASPDCEIIE 55 (93)
T ss_dssp CCCCEE-ECCCCEEEETTSCEEEEEEES--------------------------SS-SCCCEEEETTEECCCBTTEEEEE
T ss_pred CCcEee-ccCcceEEeCCCCEEEEEEEC--------------------------CC-CCeEEEEECCEECcCCCCEEEEE
Confidence 355565 677889999999999999998 64 47899999999999888998887
Q ss_pred cCCeeEEEeccCCCCCCeeEEEEEEcCC
Q psy7039 192 TKSETVLDIPFCSRSDTGHYSLTLENNL 219 (516)
Q Consensus 192 ~~~~~~l~i~~~~~~d~g~Y~c~~~~~~ 219 (516)
.+....|.|.+++.+|+|.|+|.+.|..
T Consensus 56 ~g~~~~L~I~~v~~~D~G~Y~C~a~n~~ 83 (93)
T 1waa_A 56 DGKKHILILHNCQLGMTGEVSFQAANTK 83 (93)
T ss_dssp ETTEEEEEECSCCGGGCEEEEEEETTEE
T ss_pred ECCEEEEEECCCChhhCEEEEEEECCCc
Confidence 8888899999999999999999998743
|
| >3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B* 1h3p_L | Back alignment and structure |
|---|
Probab=99.28 E-value=2.3e-11 Score=113.24 Aligned_cols=159 Identities=11% Similarity=0.073 Sum_probs=104.6
Q ss_pred CcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcC-----ceeeEEeeCC--eee----------
Q psy7039 119 STLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEP-----FLNHGWSING--QVC---------- 181 (516)
Q Consensus 119 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-----~~~i~W~~~~--~~~---------- 181 (516)
..+..+.+.+|+++.|.|.+. +.+ .+.+.|++++ ...
T Consensus 39 ~~p~~~~v~~G~~v~L~C~~~--------------------------~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~ 92 (252)
T 3bkj_L 39 QTPLSLPVNLGEQASISCRSS--------------------------QSIVHSNGHTYLEWYLQRPGQSPKLLIYQVSTR 92 (252)
T ss_dssp EECSEEEECTTSCEEEEEEES--------------------------SCCBCTTSCBCEEEEEECTTSCCEEEEETTTEE
T ss_pred eCCceEEEeCCCcEEEEEEcC--------------------------CCccccCCCCcEEEEEECCCCCcEEEEEcCCcc
Confidence 445678899999999999998 666 5788998843 111
Q ss_pred --ccCCceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCceE---EEEEeec----eeeee----ccccCCceEEEEE
Q psy7039 182 --QIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTAT---ASAHVTG----TEFTD----NNVHEGKAYEYRV 248 (516)
Q Consensus 182 --~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~---~~~~~~~----~~~~~----~~l~~g~~~~~~~ 248 (516)
....|+.+...+...+|.|.+++.+|+|.|.|.+.+..+... ..+.+.. ..+.. ....+|..+.+.|
T Consensus 93 ~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~L~C 172 (252)
T 3bkj_L 93 FSGVPDRFSGSGSGTDFTLRISRVEAEDLGVYYCFQASLVPLTFGAGTKLELKRADAAPTVSIFPPSSEQLTSGGASVVC 172 (252)
T ss_dssp CTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSBSSCEECCCEEEEECCCCBCCEEEEECCCHHHHHHTEEEEEE
T ss_pred cCCcCCceEEEccCCEEEEEECCCCcccCEEEEEEEEcCCccEECCCEEEEEeCCCcCcEEEEeCCChhhcCCCcEEEEE
Confidence 013566666566677999999999999999999988755321 1222221 11111 1123588999999
Q ss_pred EEEccCC-CCCc-eecccccccc---e-EEE-E-Eec------ceeeEEEccCCCCCceEEEEEEEecCCCc
Q psy7039 249 SAVNAAG-TEKP-KISLDALIGK---R-IKE-F-VTS------TTASLNIKNSVRKDSGIYKIEAKNDYGID 306 (516)
Q Consensus 249 ~~~~~~g-~p~p-~i~W~~~~~~---~-~~~-~-~~~------~~~~l~i~~l~~~d~g~y~c~a~n~~g~~ 306 (516)
.+ .| .|++ .+.|.+.... . ... . ... ....|.|..+..+|.|.|+|.|.|.....
T Consensus 173 ~~---~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~ 241 (252)
T 3bkj_L 173 FL---NNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTS 241 (252)
T ss_dssp EE---EEEBSSCCEEEEEETTEEECSSEEEEECCCCTTTCCEEEEEEEEEEHHHHHHCCEEEEEEECTTCSS
T ss_pred EE---eeEeCCCcEEEEEECCeecCCCeeeecCcccCCCCCEEEEEEEEEcchhccCCCeEEEEEEeCCCCC
Confidence 98 44 3443 7999762211 1 110 0 001 12358899999999999999999976554
|
| >3lpw_A A77-A78 domain from titin; intracellular FNIII-tandem, structural protein; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.28 E-value=5.9e-11 Score=105.70 Aligned_cols=141 Identities=29% Similarity=0.485 Sum_probs=101.5
Q ss_pred CCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeeecCCceEEEECCeec
Q psy7039 317 KPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEV 396 (516)
Q Consensus 317 ~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l 396 (516)
.|.+|.. +.+..++.+++.|+|++|...++.++.+|. +.|...+.
T Consensus 5 ~P~~P~~-l~~~~~~~~sv~l~W~~p~~~~~~~i~~Y~--------------------------------v~~~~~~~-- 49 (197)
T 3lpw_A 5 TPGPPQD-LKVKEVTKTSVTLTWDPPLLDGGSKIKNYI--------------------------------VEKRESTR-- 49 (197)
T ss_dssp SCCCCEE-EEEEEECSSCEEEEEECCSCCTTSCCCEEE--------------------------------EEEEETTC--
T ss_pred CCCCCCC-cEEEEecCCEEEEEEcCCccCCCCcccEEE--------------------------------EEEEECCC--
Confidence 4444433 777888999999999999888888888872 22222211
Q ss_pred CCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEEE---EEEEecCCCCCCCCcccccccCCeEEEEeeC
Q psy7039 397 SPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASC---KVYVVDKPSPPQGPLDVSDITPESCSLSWKP 473 (516)
Q Consensus 397 ~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~---~l~v~~~p~~P~~~l~~~~~~~~~~~l~W~~ 473 (516)
.....+........+.|.+|.+ ...|.|++.|.|..|.+..+. ..+....|.+| ..+.+...+.+++.|+|++
T Consensus 50 --~~~~~~~~~~~~~~~~~~~L~p-~t~Y~~~V~a~~~~g~~~~s~~~~~~t~~~~p~~p-~~~~~~~~~~~~v~l~W~~ 125 (197)
T 3lpw_A 50 --KAYSTVATNCHKTSWKVDQLQE-GCSYYFRVLAENEYGIGLPAETAESVKASERPLPP-GKITLMDVTRNSVSLSWEK 125 (197)
T ss_dssp --SSCEEEEEEECSSEEEECCCCT-TCEEEEEEEEEETTEECCCEECSSCEESCCCCCCC-SCEEEEEECSSCEEEEECC
T ss_pred --CccEEeecCCCccEEEEcCCCC-CCEEEEEEEEEcCccccCCCCCccceecCCCCCCC-cccEEEeccCCeEEEEecC
Confidence 0111111222345789999999 999999999999998754443 23334456666 7888888899999999999
Q ss_pred CCCCCCCCcceEEEEEEecCCCc
Q psy7039 474 PLDDGGSPITNYVVEKYESATGV 496 (516)
Q Consensus 474 p~~~~~~~i~~Y~v~~~~~~~~~ 496 (516)
|..++++.+.+|.|+++..+...
T Consensus 126 p~~~~~~~i~~Y~v~~~~~~~~~ 148 (197)
T 3lpw_A 126 PEHDGGSRILGYIVEMQTKGSDK 148 (197)
T ss_dssp CSCCTTSCCCEEEEEEEETTCSC
T ss_pred CCcCCCCcccEEEEEEEeCCCCc
Confidence 87777778999999999876655
|
| >2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.28 E-value=4.7e-11 Score=93.26 Aligned_cols=87 Identities=16% Similarity=0.277 Sum_probs=78.4
Q ss_pred ccccEEEEcCCeEEEEEEEeee-cCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCcee
Q psy7039 361 SIRDMTVLAGEEFTITVPFSGR-PKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDS 439 (516)
Q Consensus 361 ~~~~~~v~~g~~~~l~C~~~g~-p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s 439 (516)
.+.+..+..|+.+.|.|.+.|. |.+.+.|++++..+..+.++.+....+...|.|.++.. .|.|.|+|.|.|..|...
T Consensus 7 ~~~~~~v~~G~~v~l~C~~~g~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~-~D~G~Y~C~a~n~~g~~~ 85 (97)
T 2bk8_A 7 QIMHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYEDGVAILYVKDITK-LDDGTYRCKVVNDYGEDS 85 (97)
T ss_dssp CCCCEEECTTCCEEEEEEEESCCTTCEEEEEETTEECCSSSSEEEEEETTEEEEEECSCCG-GGCEEEEEEEECSSCEEE
T ss_pred cCcCEEEcCCCcEEEEEEEeccCCCCEEEEEECCEECcCCCCEEEEEcCCeEEEEEecCCh-hhCeEEEEEEECCCCeEe
Confidence 4567889999999999999997 88999999999998888888887777778999999999 999999999999999998
Q ss_pred EEEEEEEec
Q psy7039 440 ASCKVYVVD 448 (516)
Q Consensus 440 ~s~~l~v~~ 448 (516)
.++.|.|..
T Consensus 86 ~~~~l~V~~ 94 (97)
T 2bk8_A 86 SYAELFVKG 94 (97)
T ss_dssp EEEEEEETT
T ss_pred EEEEEEEEe
Confidence 888888865
|
| >3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex, immunoglobulin fold, immune receptor, membr immune system; HET: NAG; 2.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.28 E-value=1.2e-10 Score=109.41 Aligned_cols=124 Identities=16% Similarity=0.156 Sum_probs=80.1
Q ss_pred ceeeEEEccCCCCCceEEEEEEEec--CCCcceeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccc
Q psy7039 278 TTASLNIKNSVRKDSGIYKIEAKND--YGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPK 355 (516)
Q Consensus 278 ~~~~l~i~~l~~~d~g~y~c~a~n~--~g~~~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~ 355 (516)
....|.|.+++.+|+|.|+|.+.|. .+.......+.|......+..|.. .+
T Consensus 98 ~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v---------~~------------------ 150 (268)
T 3pl6_D 98 SVSTLKIQRTERGDSAVYLCATSALGDTQYFGPGTRLTVLEDLKNVFPPEV---------AV------------------ 150 (268)
T ss_dssp SSEEEEECSCCGGGCEEEEEEEESSSSSCEECCCEEEEEESCGGGCBCCEE---------EE------------------
T ss_pred CEEEEEECCCCcccCEEEEEEEecCCCceeeCCcEEEEEecCcccccCCce---------EE------------------
Confidence 3568999999999999999999974 222333445666542211111100 00
Q ss_pred cccccccccEEEEcCCeEEEEEEEeeecCC--ceEEEECCeecCCC----------------CceEEEEcCCeEEEEEcC
Q psy7039 356 ITSDLSIRDMTVLAGEEFTITVPFSGRPKP--TPIWTVNGDEVSPD----------------GRIKFETSENQTIYRNKS 417 (516)
Q Consensus 356 ~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~--~i~W~~~~~~l~~~----------------~~~~~~~~~~~~~l~i~~ 417 (516)
..+....+..|+.+.|.|.+.|.+++ .+.|+++|..+..+ ..+.+. +.|.|..
T Consensus 151 ----~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----s~l~i~~ 221 (268)
T 3pl6_D 151 ----FEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYSLS-----SRLRVSA 221 (268)
T ss_dssp ----ECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEESSSEECTTEEECSSCEESSTTCTTCCEEEE-----EEEEEEH
T ss_pred ----eCCCcccccCCCceEEEEEECcccCCCeEEEEEECCEECCCCeEeccccccccccCCCCcEEEE-----EEEEEcH
Confidence 00111223458999999999997665 89999999877432 122221 4577877
Q ss_pred ceecCC-ceEEEEEEEcCCCce
Q psy7039 418 AKRATD-SGSYTIQLVNTVGSD 438 (516)
Q Consensus 418 ~~~~~~-~g~y~c~a~n~~G~~ 438 (516)
... .| .|.|+|.|.|.....
T Consensus 222 ~~~-~d~~g~YtC~v~~~~l~~ 242 (268)
T 3pl6_D 222 TFW-QNPRNHFRCQVQFYGLSE 242 (268)
T ss_dssp HHH-SCTTCEEEEEEEECCBCT
T ss_pred HHh-ccCCCEEEEEEEcCCCCC
Confidence 777 66 999999999986553
|
| >1uey_A KIAA0343 protein; immunoglobulin-like beta-sandwich fold, NG-CAM related cell adhesion molecule, fibronectin type III domain, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1 | Back alignment and structure |
|---|
Probab=99.28 E-value=5.6e-11 Score=98.03 Aligned_cols=94 Identities=35% Similarity=0.576 Sum_probs=79.0
Q ss_pred CCCCCCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCC---CCeEEeEEeecCCcEEEeCCCcCCCeEEEEE
Q psy7039 11 FDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKT---GNWEKAVVVPAGETSCTVPGLIEGETYQFQV 87 (516)
Q Consensus 11 ~~~p~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~---~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~~ 87 (516)
.++|++|.++.+..++++++.|+|.+| .+++++|.+|.|+|+... +.|..+.......+. .|.+|.+++.|.|++
T Consensus 14 ~~~P~~P~~~~~~~~~~~sv~l~W~p~-~~~~~~i~~Y~v~~~~~~~~~~~w~~~~~~~~~~~~-~i~~L~p~t~Y~frV 91 (127)
T 1uey_A 14 YDVPNPPFDLELTDQLDKSVQLSWTPG-DDNNSPITKFIIEYEDAMHKPGLWHHQTEVSGTQTT-AQLNLSPYVNYSFRV 91 (127)
T ss_dssp CCSCCCCEEEEEECCSSSCEEEEEECC-CCCSSCEEEEEEEEEBTTTCTTCEEEEEEEESSCCE-EEECCCTTCEECCEE
T ss_pred ecCCcCCCCcEEEEccCCEEEEEEECC-CCCCCCceEEEEEEEECCCCCCccEEEeeeCCCceE-EEecCCCCCEEEEEE
Confidence 578999999999999999999999987 577889999999998753 378877666555555 577999999999999
Q ss_pred EEecCCCCCCCCCCCcceE
Q psy7039 88 RAVNAAGPGEASKPTAPIV 106 (516)
Q Consensus 88 ~a~n~~g~~~~s~~~~~~~ 106 (516)
+|.|..|.+.++.....+.
T Consensus 92 ~A~n~~G~s~~S~~~~~~~ 110 (127)
T 1uey_A 92 MAVNSIGKSLPSEASEQYL 110 (127)
T ss_dssp EEEESSCBCCCCSCCCCEE
T ss_pred EEEeCCccCCccccccceE
Confidence 9999999998887654343
|
| >2fbj_H IGA-kappa J539 FAB (heavy chain); immunoglobulin; HET: NAG FUC; 1.95A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mcp_H 2mcp_H* | Back alignment and structure |
|---|
Probab=99.28 E-value=5.7e-11 Score=108.19 Aligned_cols=165 Identities=13% Similarity=0.123 Sum_probs=104.7
Q ss_pred ccccCCceEEEEEEEEccCCCC--Cceecccccc-c-----------------------ceEEEEEe--cceeeEEEccC
Q psy7039 236 NNVHEGKAYEYRVSAVNAAGTE--KPKISLDALI-G-----------------------KRIKEFVT--STTASLNIKNS 287 (516)
Q Consensus 236 ~~l~~g~~~~~~~~~~~~~g~p--~p~i~W~~~~-~-----------------------~~~~~~~~--~~~~~l~i~~l 287 (516)
..+.+|+.+.|.|.+ .|.+ .+.+.|.+.. + .++.+... .....|.|.++
T Consensus 10 ~~v~~G~~v~L~C~~---~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v 86 (220)
T 2fbj_H 10 GLVQPGGSLKLSCAA---SGFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDNAKNSLYLQMSKV 86 (220)
T ss_dssp EEECTTCCEEEEEEE---ESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECSSSCEEEEEECSC
T ss_pred eEecCCCcEEEEEEe---cCccCCCceEEEEEECCCCCeEEEEEEccCCCceecCCccCCcEEEEeeCCCCEEEEEECCC
Confidence 456789999999988 4443 5778895421 1 12222221 23568999999
Q ss_pred CCCCceEEEEEEEecCCC---cceeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeecccccccccccc
Q psy7039 288 VRKDSGIYKIEAKNDYGI---DMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRD 364 (516)
Q Consensus 288 ~~~d~g~y~c~a~n~~g~---~~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~ 364 (516)
+.+|+|.|.|.+.+..+. ......|.|...+..+.. +... ..
T Consensus 87 ~~~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~-v~~~----------------------------------~~ 131 (220)
T 2fbj_H 87 RSEDTALYYCARLHYYGYNAYWGQGTLVTVSAESARNPT-IYPL----------------------------------TL 131 (220)
T ss_dssp CGGGCEEEEEEEEETTTEEEEECCCEEEEECSSCCBCCE-EEEE----------------------------------CC
T ss_pred ChhhCEEEEEEEeccccccceecCCEEEEecCCCCCCCE-EEEe----------------------------------ec
Confidence 999999999999987542 122356666643221100 0000 01
Q ss_pred EEEEcCCeEEEEEEEeee-cC--CceEEEECCeecCC-CCceEEEEcCC---eEEEEEcCceecCCceEEEEEEEcCCCc
Q psy7039 365 MTVLAGEEFTITVPFSGR-PK--PTPIWTVNGDEVSP-DGRIKFETSEN---QTIYRNKSAKRATDSGSYTIQLVNTVGS 437 (516)
Q Consensus 365 ~~v~~g~~~~l~C~~~g~-p~--~~i~W~~~~~~l~~-~~~~~~~~~~~---~~~l~i~~~~~~~~~g~y~c~a~n~~G~ 437 (516)
..+..|+.+.|.|.+.+. |. +.+.|++++..+.. .........+. .+.|.|..... .|.|.|+|.|.|..|.
T Consensus 132 ~~~~~g~~v~L~C~~~g~~P~~~~~v~W~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~-~d~g~ytC~v~n~~~~ 210 (220)
T 2fbj_H 132 PPALSSDPVIIGCLIHDYFPSGTMNVTWGKSGKDITTVNFPPALASGGRYTMSNQLTLPAVEC-PEGESVKCSVQHDSNP 210 (220)
T ss_dssp CSSSCCSSEEEEEEEEEEBSCCCEEEEESCCCSSCEEEECCCEECSSSCEEEEEEEEECGGGS-CTTCEEEEEEEETTSC
T ss_pred ccccCCCcEEEEEEEEeEECCCcEEEEEecCCEecceEecCceECCCCCEEEEEEEEECHHHc-CCCCeEEEEEEcCCCc
Confidence 123578899999999987 65 68999999875411 00001101111 13588988888 8999999999999987
Q ss_pred ee
Q psy7039 438 DS 439 (516)
Q Consensus 438 ~s 439 (516)
..
T Consensus 211 ~~ 212 (220)
T 2fbj_H 211 VQ 212 (220)
T ss_dssp CE
T ss_pred eE
Confidence 43
|
| >2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.27 E-value=2.4e-11 Score=97.38 Aligned_cols=92 Identities=24% Similarity=0.462 Sum_probs=79.6
Q ss_pred ccccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCC-CCceEEEEc-CCeEEEEEcCceecCCceEEEEEEEcCCCce
Q psy7039 361 SIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSP-DGRIKFETS-ENQTIYRNKSAKRATDSGSYTIQLVNTVGSD 438 (516)
Q Consensus 361 ~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~-~~~~~~~~~-~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~ 438 (516)
.+....+..|+.+.|.|.+.|.|.+.+.|++++..+.. ..++.+... .+...|.|.++.. .|.|.|+|.|.|..|..
T Consensus 14 ~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~~~~~~~~~~L~i~~v~~-~D~G~Y~C~a~N~~g~~ 92 (110)
T 2dm2_A 14 KLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSLHTTASTL-DDDGNYTIMAANPQGRI 92 (110)
T ss_dssp CCCCEEEETTCCEEEEEEBCCSSCCEEEEECSSCBCCTTCSSEEEEECTTCEEEEEESSCCT-TTCSCCEEEEECTTCCE
T ss_pred cCcCeEEeCCCeEEEEEEEEecCCCEEEEEECCEECCCCCCeEEEEECCCcEEEEEECCCCh-hhCEEEEEEEEECCCeE
Confidence 34667899999999999999999999999999988864 456666554 3445899999999 99999999999999999
Q ss_pred eEEEEEEEecCCCCC
Q psy7039 439 SASCKVYVVDKPSPP 453 (516)
Q Consensus 439 s~s~~l~v~~~p~~P 453 (516)
+..+.|.|..+|.+|
T Consensus 93 ~~~~~l~V~~~~~~P 107 (110)
T 2dm2_A 93 SCTGRLMVQAVNSGP 107 (110)
T ss_dssp EECCCEEEECCSCCS
T ss_pred EEEEEEEEECCCCCC
Confidence 999999999888877
|
| >3bae_H WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} SCOP: b.1.1.2 PDB: 3bkc_H 3bkj_H 3bkm_H 3mck_H 2r0w_H* 2iqa_H 2iq9_H 1ggi_H 1ggb_H 1ggc_H 3eys_H* 2ipt_H 2ipu_H 3eyu_H* 2r0z_H* 3rkd_H 1r0a_H* 1n5y_H* 1n6q_H* 1t03_H* ... | Back alignment and structure |
|---|
Probab=99.27 E-value=4.6e-11 Score=109.43 Aligned_cols=170 Identities=16% Similarity=0.124 Sum_probs=105.5
Q ss_pred eccccCCceEEEEEEEEccCCCCC----ceecccccc-c----------------------ceEEEEEe--cceeeEEEc
Q psy7039 235 DNNVHEGKAYEYRVSAVNAAGTEK----PKISLDALI-G----------------------KRIKEFVT--STTASLNIK 285 (516)
Q Consensus 235 ~~~l~~g~~~~~~~~~~~~~g~p~----p~i~W~~~~-~----------------------~~~~~~~~--~~~~~l~i~ 285 (516)
...+.+|..+.|.|.+ .|.+. +.+.|.+.. + .++.+... .....|.|.
T Consensus 9 ~~~v~~G~~v~L~C~~---~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~ 85 (228)
T 3bae_H 9 PGLLKPSQTLSLTCSF---SGFSIRTSKVGVSWIRQPSGKGLEWLAHIYWDDDKRYNPSLESRLTISKDTSRDMVFMKIT 85 (228)
T ss_dssp CSEECTTCCEEEEEEE---ESSCHHHHCCEEEEEEEETTCCCEEEEEECTTSCEEECTTTGGGEEEEEETTTTEEEEEEC
T ss_pred ceeecCCCeEEEEEEE---eCcccCCCceeEEEEEECCCCCeEEEEEEecCCceeeCcccCCcEEEEEcCCCCeEEEEEc
Confidence 3456789999999998 55554 789995421 1 12222221 235789999
Q ss_pred cCCCCCceEEEEEEEecCC------C---cceeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeecccc
Q psy7039 286 NSVRKDSGIYKIEAKNDYG------I---DMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKI 356 (516)
Q Consensus 286 ~l~~~d~g~y~c~a~n~~g------~---~~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~ 356 (516)
+++.+|+|.|.|.+.|..| . ......|.|...+. ..|....
T Consensus 86 ~v~~~D~G~Y~C~~~~~~g~~~~~~~~~~~~~~~~L~V~~~~~--~~P~i~~---------------------------- 135 (228)
T 3bae_H 86 SVDTADTATYYCARRGFYGRKYEVNHFDYWGQGTTLTVSSAKT--TAPSVYP---------------------------- 135 (228)
T ss_dssp SCCGGGCEEEEEEEEEESTTCTTSEEEEEECCCEEEEECSCCC--BCCEEEE----------------------------
T ss_pred CCCcccCEEEEEEEecCCCccccccceeeeCCcEEEEecCCCC--CCCEEEE----------------------------
Confidence 9999999999999998765 1 11235666654221 1110000
Q ss_pred ccccccccEEEEcCCeEEEEEEEeee-cCC-ceEEEECCeecCCCCceEEEEcC---CeEEEEEcCceecCCceEEEEEE
Q psy7039 357 TSDLSIRDMTVLAGEEFTITVPFSGR-PKP-TPIWTVNGDEVSPDGRIKFETSE---NQTIYRNKSAKRATDSGSYTIQL 431 (516)
Q Consensus 357 ~~~~~~~~~~v~~g~~~~l~C~~~g~-p~~-~i~W~~~~~~l~~~~~~~~~~~~---~~~~l~i~~~~~~~~~g~y~c~a 431 (516)
......+..|+.+.|.|.+.|. |.+ .+.|++++..+...........+ ..+.|.|..+.. ++ |.|+|.|
T Consensus 136 ----~~~~~~~~~g~~~~l~C~~~g~~P~p~~v~W~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~-d~-g~YtC~~ 209 (228)
T 3bae_H 136 ----LAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTW-PS-ESITCNV 209 (228)
T ss_dssp ----ECC-----CCSEEEEEEEEEEEBSSCCEEEEGGGTCCTTEEEEEEEEETTEEEEEEEEEEETTTT-TT-SCCEEEE
T ss_pred ----ecccccccCCCCEEEEEEEccEeCCCEEEEEeeCCcccCceEcCceeCCCcEEEEEEEEEEhhhc-CC-CcEEEEE
Confidence 0011235689999999999987 777 99999988653211111111111 124688888877 67 9999999
Q ss_pred EcCCCceeEEEE
Q psy7039 432 VNTVGSDSASCK 443 (516)
Q Consensus 432 ~n~~G~~s~s~~ 443 (516)
.|..|.......
T Consensus 210 ~n~~~~~~~~~~ 221 (228)
T 3bae_H 210 AHPASSTKVDKK 221 (228)
T ss_dssp EEGGGTEEEEEE
T ss_pred EECCCCCCEEEE
Confidence 999987654433
|
| >1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4 | Back alignment and structure |
|---|
Probab=99.27 E-value=6.6e-11 Score=92.75 Aligned_cols=86 Identities=24% Similarity=0.361 Sum_probs=74.7
Q ss_pred cccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEEE-EcCCeEEEEEcCceecCCceEEEEEEEcCCCceeE
Q psy7039 362 IRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFE-TSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSA 440 (516)
Q Consensus 362 ~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~-~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~ 440 (516)
+....+..|+.+.|.|.+.|.|.+.+.|++++..+....++... ...+...|.|.++.. .|+|.|+|.|.|..|....
T Consensus 12 ~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~-~D~G~Y~C~a~N~~g~~~~ 90 (99)
T 1g1c_A 12 IQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTG-EDSASIMVKAINIAGETSS 90 (99)
T ss_dssp CCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEEEETTEEEEEECSCCG-GGCEEEEEEEEETTEEEEE
T ss_pred CcceEEcCCCcEEEEEEEEEeCCCEEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCCc-CCCEEEEEEEEECCCcEEE
Confidence 45678999999999999999999999999999988766665543 345667899999999 9999999999999999888
Q ss_pred EEEEEEec
Q psy7039 441 SCKVYVVD 448 (516)
Q Consensus 441 s~~l~v~~ 448 (516)
++.|.|..
T Consensus 91 ~~~l~V~~ 98 (99)
T 1g1c_A 91 HAFLLVQA 98 (99)
T ss_dssp EEEEEEEC
T ss_pred EEEEEEec
Confidence 88888864
|
| >2lu7_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.27 E-value=1.2e-11 Score=93.60 Aligned_cols=72 Identities=18% Similarity=0.279 Sum_probs=64.8
Q ss_pred ccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEeecCCeeEEEe
Q psy7039 121 LNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTTKSETVLDI 200 (516)
Q Consensus 121 ~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i 200 (516)
+..+.+.+|+.+.|.|.+. + |.+.+.|++++..+....++.+...+....|.|
T Consensus 3 lt~v~~~~G~~v~l~C~vs--------------------------~-p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I 55 (84)
T 2lu7_A 3 MTRVRSTPGGDLELVVHLS--------------------------G-PGGPVRWYKDGERLASQGRVQLEQAGARQVLRV 55 (84)
T ss_dssp CCCEEECTTSCEEEECCCS--------------------------C-CSTTCEEEETTEECCCCSSEEEEECSSCEEEEE
T ss_pred CeEEEEecCCCEEEEEEEC--------------------------C-CCcEEEEEECCEEccccccEEEeecCCeEEEEe
Confidence 4568899999999999987 6 888999999999999999999888888899999
Q ss_pred ccCCCCCCeeEEEEEEcCC
Q psy7039 201 PFCSRSDTGHYSLTLENNL 219 (516)
Q Consensus 201 ~~~~~~d~g~Y~c~~~~~~ 219 (516)
.+++.+|+|.|+|.+.|..
T Consensus 56 ~~~~~~D~G~Y~C~a~n~~ 74 (84)
T 2lu7_A 56 QGARSGDAGEYLCDAPQDS 74 (84)
T ss_dssp SSCSSTTCEEEEEECTTTC
T ss_pred cCCCCcccEEEEEEECCEE
Confidence 9999999999999986643
|
| >3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.27 E-value=6.6e-11 Score=92.71 Aligned_cols=86 Identities=30% Similarity=0.548 Sum_probs=78.0
Q ss_pred cccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEE
Q psy7039 362 IRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSAS 441 (516)
Q Consensus 362 ~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s 441 (516)
+....+..|+.+.|.|.+.+.|.+.+.|++++..+..+.++.+........|.|.++.. .|.|.|+|.|.|..|..+.+
T Consensus 13 ~~~~~v~~G~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~-~d~G~Y~C~a~n~~g~~~~~ 91 (99)
T 3puc_A 13 LQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGFFLEIHKTDT-SDSGLYTCTVKNSAGSVSSS 91 (99)
T ss_dssp CCCEEEESSSCEEEEEEEEEESCCEEEEEETTEECCSSSSEEEEEETTEEEEEECSCCG-GGCEEEEEEEEETTEEEEEE
T ss_pred CccEEEeCCCcEEEEEEEEecCCCEEEEEECCEECcCCCCEEEEEeCCEEEEEECCCCc-ccCEEEEEEEEeCCCcEeEE
Confidence 45678999999999999999999999999999999888888888777778999999999 99999999999999999888
Q ss_pred EEEEEec
Q psy7039 442 CKVYVVD 448 (516)
Q Consensus 442 ~~l~v~~ 448 (516)
+.|.|..
T Consensus 92 ~~l~V~~ 98 (99)
T 3puc_A 92 CKLTIKA 98 (99)
T ss_dssp EEEEEEC
T ss_pred EEEEEEe
Confidence 8888863
|
| >4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain, human constant...; natural killer T cell receptor, immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B 4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B 3qjh_B 3qiw_D* 3qiu_D | Back alignment and structure |
|---|
Probab=99.27 E-value=1e-10 Score=108.23 Aligned_cols=130 Identities=14% Similarity=0.089 Sum_probs=78.7
Q ss_pred ceeeEEEccCCCCCceEEEEEEEecC----CCcceeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeec
Q psy7039 278 TTASLNIKNSVRKDSGIYKIEAKNDY----GIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGA 353 (516)
Q Consensus 278 ~~~~l~i~~l~~~d~g~y~c~a~n~~----g~~~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y 353 (516)
....|.|.+++.+|+|.|.|.+.+.. +.......+.|.........|.. .+
T Consensus 74 ~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~p~~---------~~---------------- 128 (245)
T 4ei6_B 74 SYFTLKIQPTALEDSAVYFCASSFWGAYAEQFFGPGTRLTVLEDLKNVFPPEV---------AV---------------- 128 (245)
T ss_dssp SCEEEEECSCCGGGCEEEEEEEECSSTTCCCEECCCEEEEEESCGGGCBCCEE---------EE----------------
T ss_pred ceEEEEECCCCHhHCEEEEEEEccCCCcceEEEcCCcEEEEecccCCCCCceE---------EE----------------
Confidence 34589999999999999999998532 22223445666542111111100 00
Q ss_pred cccccccccccEEEEcCCeEEEEEEEeeecC-C-ceEEEECCeecCCCCceEEEE-------cCC----eEEEEEcCcee
Q psy7039 354 PKITSDLSIRDMTVLAGEEFTITVPFSGRPK-P-TPIWTVNGDEVSPDGRIKFET-------SEN----QTIYRNKSAKR 420 (516)
Q Consensus 354 ~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~-~-~i~W~~~~~~l~~~~~~~~~~-------~~~----~~~l~i~~~~~ 420 (516)
..+....+..|+.+.|.|.+.|.++ + .+.|+++|..+.......... ..+ .+.|.|.....
T Consensus 129 ------~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~ 202 (245)
T 4ei6_B 129 ------FEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFW 202 (245)
T ss_dssp ------ECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECTTEEECSSCEESSTTSTTCCEEEEEEEEEEHHHH
T ss_pred ------eCCCcccccCCCceEEEEEEeeEeCCCeEEEEEECCEECCCCcccccccccccccCCCCCEEEEEEEEEcHHHh
Confidence 0011122345899999999998544 4 899999998775422110000 011 13588888877
Q ss_pred cCC-ceEEEEEEEcCCCcee
Q psy7039 421 ATD-SGSYTIQLVNTVGSDS 439 (516)
Q Consensus 421 ~~~-~g~y~c~a~n~~G~~s 439 (516)
.| .|.|+|.|.|......
T Consensus 203 -~d~~g~ytC~v~~~~l~~~ 221 (245)
T 4ei6_B 203 -QNPRNHFRCQVQFYGLSEN 221 (245)
T ss_dssp -SCTTCEEEEEEEECCBCTT
T ss_pred -ccCCCeEEEEEEECCCCCc
Confidence 77 9999999999865433
|
| >3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.27 E-value=2.4e-11 Score=95.28 Aligned_cols=89 Identities=27% Similarity=0.449 Sum_probs=77.2
Q ss_pred CCccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEeec
Q psy7039 113 APRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTT 192 (516)
Q Consensus 113 ~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~ 192 (516)
+|.|. ..+..+.+.+|+.+.|.|.+. +.|.+.+.|++++..+....++.+...
T Consensus 6 ~P~i~-~~~~~~~v~~G~~~~l~C~~~--------------------------g~p~p~v~W~~~g~~~~~~~~~~~~~~ 58 (99)
T 3puc_A 6 KPVIV-TGLQDTTVSSDSVAKFAVKAT--------------------------GEPRPTAIWTKDGKAITQGGKYKLSED 58 (99)
T ss_dssp EEEEE-ECCCCEEEESSSCEEEEEEEE--------------------------EESCCEEEEEETTEECCSSSSEEEEEE
T ss_pred CCEEE-ecCccEEEeCCCcEEEEEEEE--------------------------ecCCCEEEEEECCEECcCCCCEEEEEe
Confidence 45555 556778999999999999999 899999999999999988888888877
Q ss_pred CCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEEe
Q psy7039 193 KSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHV 228 (516)
Q Consensus 193 ~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~ 228 (516)
+....|.|.+++.+|+|.|+|.+.|..|.......+
T Consensus 59 ~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l 94 (99)
T 3puc_A 59 KGGFFLEIHKTDTSDSGLYTCTVKNSAGSVSSSCKL 94 (99)
T ss_dssp TTEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred CCEEEEEECCCCcccCEEEEEEEEeCCCcEeEEEEE
Confidence 778899999999999999999999998877655543
|
| >1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G | Back alignment and structure |
|---|
Probab=99.27 E-value=7.9e-12 Score=112.40 Aligned_cols=124 Identities=18% Similarity=0.185 Sum_probs=90.4
Q ss_pred cEEEeCCCcCCCeEEEEEEEecCCCCCCCCCCCcceEeccCCCCCccccCcccceEEecCCeEEEEEee-eeccccccCc
Q psy7039 70 TSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAPRIDRSTLNDVKIKAGQSFSFDVKE-FRELSYTKSP 148 (516)
Q Consensus 70 ~~~~i~~l~~~~~y~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~-~~~~~~~~~~ 148 (516)
..|.|.+++..|.|.|+|.|.|..|... ......+.+.. +|.+. .......+.+|+.+.|.|.+ .
T Consensus 68 ~~L~i~~~~~~d~G~Y~C~~~~~~g~~~-~~~~~~l~V~~---~p~~~-~~~~~~~~~~g~~~~l~C~~~~--------- 133 (209)
T 1nbq_A 68 TGITFKSVTREDTGTYTCMVSEEGGNSY-GEVKVKLIVLV---PPSKP-TVNIPSSATIGNRAVLTCSEQD--------- 133 (209)
T ss_dssp TEEECSCCCTTSCSEEEEEEEETTSSCE-ECCEEECCEEB---CCCCC-CCCCBSEEETTSCEEECCCCCS---------
T ss_pred cEEEEeeCCHHHCcEEEEEEecCCCCcc-ceEEEEEEEec---CCcCC-CcccccceecCCEEEEEEeCCC---------
Confidence 7899999999999999999999866322 11222222222 33332 22334568899999999997 6
Q ss_pred cccccccccCccceeecCcCceeeEEeeCCeeeccCCce-------EEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCc
Q psy7039 149 LRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRA-------DVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGT 221 (516)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~-------~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~ 221 (516)
+.|.+.+.|++++..+....+. .+........|.|.+++.+|+|.|+|.+.|..|.
T Consensus 134 -----------------~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~ 196 (209)
T 1nbq_A 134 -----------------GSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGT 196 (209)
T ss_dssp -----------------CBSCCEEEEEETTCCCCSCSSSSSSCTTCCCCCCTTTCCEEESSCCGGGCCCEEEEEECSSSC
T ss_pred -----------------CCCCceeEEEECCeeCCCccccceeeeccceEEcCCcceEEEEeccccCCeEEEEEEeCCcCc
Confidence 8999999999999887654322 1112234578999999999999999999999887
Q ss_pred eEE
Q psy7039 222 ATA 224 (516)
Q Consensus 222 ~~~ 224 (516)
...
T Consensus 197 ~~~ 199 (209)
T 1nbq_A 197 PMT 199 (209)
T ss_dssp CEE
T ss_pred ccc
Confidence 743
|
| >1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A | Back alignment and structure |
|---|
Probab=99.26 E-value=5.1e-11 Score=106.45 Aligned_cols=159 Identities=10% Similarity=0.053 Sum_probs=100.0
Q ss_pred eeCCeeEEEecCCCCCCCCceeceEEEEEeCCCCeEE---eEEeecCCcEEEeCCCcCCCeEEEEEEEecCC-CCCCCCC
Q psy7039 25 WDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEK---AVVVPAGETSCTVPGLIEGETYQFQVRAVNAA-GPGEASK 100 (516)
Q Consensus 25 ~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~~~~~---~~~~~~~~~~~~i~~l~~~~~y~~~~~a~n~~-g~~~~s~ 100 (516)
...+.+.|.+.... . +. . +.|...+..... ..........|.|.+++..|.|.|+|.|.|.. |....+.
T Consensus 17 ~~G~~v~L~C~~~~---~-~~-~--~~W~k~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~~g~~~~s~ 89 (198)
T 1ugn_A 17 TQGSPVTLRCQGGQ---E-TQ-E--YRLYREKKTAPWITRIPQELVKKGQFPIPSITWEHTGRYRCYYGSDTAGRSESSD 89 (198)
T ss_dssp ETTCCEEEEEECCT---T-CC-C--EEEEESSSCCHHHHTSCHHHHTTTEEEESSCCGGGCEEEEEEEEETTTEECCCCC
T ss_pred cCCCcEEEEEEecC---C-Cc-E--EEEEECCccccccccccccCCcccEEEECCCCHHHCeEEEEEEECCCCCcccCCc
Confidence 35677899988632 1 11 2 445444431100 00012356789999999999999999999976 5333222
Q ss_pred CCcceEeccCCCCCccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCee
Q psy7039 101 PTAPIVAKPKNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQV 180 (516)
Q Consensus 101 ~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~ 180 (516)
...+.+.....+|.+. .. ....+.+|+.+.|.|.+. +. .+.+.|++++..
T Consensus 90 -~~~l~V~~~~~~p~i~-~~-~~~~v~~G~~v~L~C~~~--------------------------~~-~~~v~W~k~g~~ 139 (198)
T 1ugn_A 90 -PLELVVTGAYIKPTLS-AQ-PSPVVNSGGNVTLQCDSQ--------------------------VA-FDGFILCKEGED 139 (198)
T ss_dssp -CEEEEEECSSCCCEEE-EE-SCSEEETTCCEEEEEECS--------------------------SC-CSEEEEEEC---
T ss_pred -cEEEEEcccccCCccc-cC-CccccCCCCcEEEEEecC--------------------------CC-CcEEEEEECCCc
Confidence 2334443333456554 22 236788999999999999 77 679999999887
Q ss_pred eccCCc-eEEe-ecCCeeEEEeccCCCCCCeeEEEEEEcCCC
Q psy7039 181 CQIGGR-ADVQ-TTKSETVLDIPFCSRSDTGHYSLTLENNLG 220 (516)
Q Consensus 181 ~~~~~~-~~~~-~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g 220 (516)
+..... +... ..+....|.|.+++.+|+|.|+|.+.|..+
T Consensus 140 ~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~~ 181 (198)
T 1ugn_A 140 EHPQCLNSQPHARGSSRAIFSVGPVSPSRRWWYRCYAYDSNS 181 (198)
T ss_dssp ---CEEEC------CCEEEEEECCCCTTSCEEEEEEEECTTS
T ss_pred cCCccccccccCCCcceeEEEecccCcccCeEEEEEEEeCCC
Confidence 643221 1111 123457999999999999999999999765
|
| >3fl7_A Ephrin receptor; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase, glycoprotein; HET: NAG; 2.50A {Homo sapiens} PDB: 2x10_A* 2x11_A 3mx0_A* 3mbw_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=7.8e-12 Score=127.69 Aligned_cols=177 Identities=16% Similarity=0.155 Sum_probs=118.1
Q ss_pred CCCCceEEEEEEEecCCCccee-EEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEE
Q psy7039 288 VRKDSGIYKIEAKNDYGIDMAD-IEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMT 366 (516)
Q Consensus 288 ~~~d~g~y~c~a~n~~g~~~~~-~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~ 366 (516)
...+.|.|.|.+.|.++..... ....+..+|.+|.. + ...++.+++.|+|.+|.+.+|.+|.+|.
T Consensus 303 ~s~~~Gs~~C~C~ng~~ra~~d~~~~~ct~pPsaP~n-l-~~~vs~tSv~LsW~pP~~~gG~~i~~Y~------------ 368 (536)
T 3fl7_A 303 LPSPEGATSCECEEGFFRAPQDPASMPCTRPPSAPHY-L-TAVGMGAKVELRWTPPQDSGGREDIVYS------------ 368 (536)
T ss_dssp ECCCTTCSSCEECTTCBCCTTCCTTSCCBCCCCCBSC-E-EEECCTTSEEEEECCBSCCCSCSCCEEE------------
T ss_pred CCCCCCccEEEEeccccccCCCccccccccCCCcccc-e-EEEecCCEEEEEEeCCcCCCCCceeEEE------------
Confidence 4557799999999998875443 22233345555544 4 3468899999999999999998888883
Q ss_pred EEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceE-EEEcCCeEEEEEcCceecCCceEEEEEEEcCCCc---eeEEE
Q psy7039 367 VLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIK-FETSENQTIYRNKSAKRATDSGSYTIQLVNTVGS---DSASC 442 (516)
Q Consensus 367 v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~-~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~---~s~s~ 442 (516)
+.|...+... -.|...+.. ..+. .........++|.+|.+ ...|.|++.|.|..|. ...+.
T Consensus 369 --------V~~~~~~~~~--~~~~~c~~~----~~~~~~~~~~~~ts~tI~gL~P-~T~Y~frV~A~N~~G~~sps~~s~ 433 (536)
T 3fl7_A 369 --------VTCEQCWPES--GECGPCEAS----VRYSEPPHGLTRTSVTVSDLEP-HMNYTFTVEARNGVSGLVTSRSFR 433 (536)
T ss_dssp --------EEEEEECC-C--CCEEECCTT----CEESSCSSSBCSSEEEEECCCT-TCEEEEEEEEECTTGGGCSCCCEE
T ss_pred --------EEEEeccCCC--CcccccCCC----ceEEEeecCCccceeEeCCCCC-CCEEEEEEEEEecCCCCCCCCccc
Confidence 1111110000 011110000 0000 00011235688999999 9999999999999987 44667
Q ss_pred EEEEecCCCCCCCCcccccccCCeEEEEeeCCCCCCCCCcceEEEEEEecCCC
Q psy7039 443 KVYVVDKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATG 495 (516)
Q Consensus 443 ~l~v~~~p~~P~~~l~~~~~~~~~~~l~W~~p~~~~~~~i~~Y~v~~~~~~~~ 495 (516)
.+.+.+.+.+| ..+.+..++.+++.|+|++|. +.++.|.+|.|+|+..+..
T Consensus 434 ~v~v~T~~~~P-s~~~~~~~s~tSV~LsW~pP~-~~ng~I~~Y~V~y~~~~~~ 484 (536)
T 3fl7_A 434 TASVSINQTEP-PKVRLEGRSTTSLSVSWSIPP-PQQSRVWKYEVTYRKKGDS 484 (536)
T ss_dssp EEEEECCSCCC-CEEEEEECCC-CCEEEEECCT-TTTTTCSEEEEEEEEC--C
T ss_pred eeEEeecccCC-CCCceeeccCCeEEEEEECCc-CCCCcccEEEEEEEECCCC
Confidence 88888888877 566667888999999999885 5678899999999987654
|
| >2vkw_A Neural cell adhesion molecule 1,140 kDa isoform; adhesion receptor; 2.3A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 2vkx_A 1lwr_A | Back alignment and structure |
|---|
Probab=99.26 E-value=7.9e-12 Score=112.89 Aligned_cols=138 Identities=20% Similarity=0.250 Sum_probs=95.8
Q ss_pred EEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeeecCCceEEEEC
Q psy7039 313 VVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVN 392 (516)
Q Consensus 313 ~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~ 392 (516)
.....|.+|.. +.+...+. ++.|+|.+|.+++|.+|.+|. |.|...
T Consensus 4 ~~~~~P~~P~~-~~~~~~~~-s~~l~W~~p~~~~g~~i~~Y~--------------------------------v~~~~~ 49 (209)
T 2vkw_A 4 AQADTPSSPSI-DQVEPYSS-TAQVQFDEPEATGGVPILKYK--------------------------------AEWRAV 49 (209)
T ss_dssp -CCCCCCCCEE-EEEEECSS-CEEEEEECCSCCCSSCCCEEE--------------------------------EEEEES
T ss_pred cccCCCcCCcc-cEeeeccC-eEEEEEcCCCcCCCcceeEEE--------------------------------EEEeeC
Confidence 33445555433 66766666 689999999888998898883 223222
Q ss_pred CeecCCCCceEEEE----cCCeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEEEEec----CCCCCCCCcccccccC
Q psy7039 393 GDEVSPDGRIKFET----SENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVD----KPSPPQGPLDVSDITP 464 (516)
Q Consensus 393 ~~~l~~~~~~~~~~----~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~v~~----~p~~P~~~l~~~~~~~ 464 (516)
+.. ....... ......+.|.+|.+ ...|.|+|.|.|..|.+..+..+.+.+ .|.+| ..+.+..++.
T Consensus 50 ~~~----~~~~~~~~~~~~~~~~~~~i~~L~p-~t~Y~~~V~A~n~~G~~~~s~~~~~~T~~~~~P~~P-~~~~~~~~~~ 123 (209)
T 2vkw_A 50 GEE----VWHSKWYDAKEASMEGIVTIVGLKP-ETTYAVRLAALNGKGLGEISAASEFKTQPVREPSAP-KLEGQMGEDG 123 (209)
T ss_dssp SCC----CCEEEEEEHHHHHHHSEEEECCCCT-TCEEEEEEEEEETTEECCCCCCEEEECCCSCSCCCC-EEEEEECTTS
T ss_pred CCC----CceEeEeeccCCCccceEEeCCCCC-CCeEEEEEEEEcCCcccCCcccccccccCCCCCCCC-cccccccccC
Confidence 210 0001110 01124688999999 999999999999998866555454544 35555 4566777889
Q ss_pred CeEEEEeeCCCCCCCCCcceEEEEEEe
Q psy7039 465 ESCSLSWKPPLDDGGSPITNYVVEKYE 491 (516)
Q Consensus 465 ~~~~l~W~~p~~~~~~~i~~Y~v~~~~ 491 (516)
+++.|+|++| .+++++|.+|.|+|+.
T Consensus 124 ~sv~l~W~~p-~~~~~~i~~Y~v~~~~ 149 (209)
T 2vkw_A 124 NSIKVNLIKQ-DDGGSPIRHYLVRYRA 149 (209)
T ss_dssp SCEEEEEECC-CCTTSCCCEEEEEEEE
T ss_pred CeEEEEEECc-ccCCCCCceEEEEEEC
Confidence 9999999998 4778899999999998
|
| >1wfo_A Sidekick 2; FN3, cell adhesion, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.1.2.1 | Back alignment and structure |
|---|
Probab=99.26 E-value=2.1e-11 Score=101.05 Aligned_cols=96 Identities=25% Similarity=0.383 Sum_probs=79.6
Q ss_pred ceeccCCCCCCCCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCCCe--EEeEEeecCCcEEEeCCCcCCC
Q psy7039 4 SVLIKNPFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNW--EKAVVVPAGETSCTVPGLIEGE 81 (516)
Q Consensus 4 ~~~~~~~~~~p~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~~~--~~~~~~~~~~~~~~i~~l~~~~ 81 (516)
.+.+++..+.|++|.+|++..++++++.|+|.+|. +.++.|.+|.|+|+..+..+ ..........++++|.+|++++
T Consensus 18 ~~~~~t~~~~P~~P~~l~~~~~~~~sv~l~W~~p~-~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t 96 (130)
T 1wfo_A 18 PILERTLDDVPGPPMGILFPEVRTTSVRLIWQPPA-APNGIILAYQITHRLNTTTANTATVEVLAPSARQYTATGLKPES 96 (130)
T ss_dssp CSCCCCSCCCCCCCCCCEEEEECSSEEEEECCCCS-CCCSCCCEEEEEEEESSCCCSCCCEEEECTTCCEEEEESCCSSS
T ss_pred cEEEEcCCCCCCCCCceEEEecCCCEEEEEEcCCC-CCCCceEEEEEEEEECCCCCceEEEEEeCCCceEEEEcCCCCCC
Confidence 37888999999999999999999999999999986 44456999999999865421 1122445678999999999999
Q ss_pred eEEEEEEEecCCCCCCCCC
Q psy7039 82 TYQFQVRAVNAAGPGEASK 100 (516)
Q Consensus 82 ~y~~~~~a~n~~g~~~~s~ 100 (516)
.|.|+|+|.|..|.+.++.
T Consensus 97 ~Y~~~V~A~n~~G~g~~S~ 115 (130)
T 1wfo_A 97 VYLFRITAQTRKGWGEAAE 115 (130)
T ss_dssp EEEEEEEEECSSCEEEEEE
T ss_pred EEEEEEEEEeCCcCCCCcc
Confidence 9999999999999876543
|
| >2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.26 E-value=6e-11 Score=96.11 Aligned_cols=93 Identities=23% Similarity=0.415 Sum_probs=79.7
Q ss_pred cccccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCC-CCceEEEEcC-CeEEEEEcCceecCCceEEEEEEEcCCCc
Q psy7039 360 LSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSP-DGRIKFETSE-NQTIYRNKSAKRATDSGSYTIQLVNTVGS 437 (516)
Q Consensus 360 ~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~-~~~~~~~~~~-~~~~l~i~~~~~~~~~g~y~c~a~n~~G~ 437 (516)
..+.+..+..|+.+.|.|.+.|.|.+.+.|++++..+.. ..++.+.... +...|.|.++.. .|.|.|+|.|.|..|.
T Consensus 20 ~~p~~~~v~~G~~v~L~C~~~g~p~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~-~D~G~Y~C~a~N~~G~ 98 (116)
T 2kkq_A 20 YKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTGRVTLLIKDVNK-KDAGWYTVSAVNEAGV 98 (116)
T ss_dssp SCCCCEEEETTEEEEEEEEBCCBSCCEEEEEETTEECCCCBTTEEEEECTTCEEEEEEEEECG-GGCEEEEEEEEETTEE
T ss_pred eCCCcEEEeCCCcEEEEEEEeccCCCEEEEEECCEECcCCCCeEEEEeCCCCeEEEEECCCCc-ccCEEEEEEEEcCCCe
Confidence 345678899999999999999999999999999988864 4566665544 345899999999 9999999999999999
Q ss_pred eeEEEEEEEecCCCCC
Q psy7039 438 DSASCKVYVVDKPSPP 453 (516)
Q Consensus 438 ~s~s~~l~v~~~p~~P 453 (516)
....+.|.|..+|.++
T Consensus 99 ~~~~~~l~V~~~p~~~ 114 (116)
T 2kkq_A 99 TTCNTRLDVTARPNQT 114 (116)
T ss_dssp EEEEEEEEEECCSCCC
T ss_pred EEEEEEEEEeCCCCCC
Confidence 9999999999877655
|
| >1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A | Back alignment and structure |
|---|
Probab=99.26 E-value=2.7e-11 Score=93.81 Aligned_cols=87 Identities=28% Similarity=0.420 Sum_probs=71.8
Q ss_pred CCccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCC--eeeccCCceEEe
Q psy7039 113 APRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSING--QVCQIGGRADVQ 190 (516)
Q Consensus 113 ~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~--~~~~~~~~~~~~ 190 (516)
+|.|. ..+..+.+.+|+.+.|.|.+. |.|.+.+.|++++ ..+.... .+.
T Consensus 2 ~P~i~-~~~~~~~v~~G~~~~l~C~~~--------------------------g~P~p~i~W~k~~~~~~~~~~~--~~~ 52 (93)
T 1wit_A 2 KPKIL-TASRKIKIKAGFTHNLEVDFI--------------------------GAPDPTATWTVGDSGAALAPEL--LVD 52 (93)
T ss_dssp CCEEC-CCCCEEEECTTBCCEEEEEEE--------------------------CCSSCEEEEECSTTTCBCSTTS--EEE
T ss_pred CCeEE-cCCCceEEeCCCEEEEEEEEE--------------------------EcCCCEEEEEECCCCcccCCcE--EEE
Confidence 56665 556788999999999999999 9999999999999 7775443 333
Q ss_pred ecCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEEe
Q psy7039 191 TTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHV 228 (516)
Q Consensus 191 ~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~ 228 (516)
.......|.|.+++.+|+|.|+|.+.|..|.......+
T Consensus 53 ~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l 90 (93)
T 1wit_A 53 AKSSTTSIFFPSAKRADSGNYKLKVKNELGEDEAIFEV 90 (93)
T ss_dssp EETTEEEEECTTBCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred ecCCEEEEEECCCChhcCEEEEEEEEcCCCeEEEEEEE
Confidence 44567899999999999999999999999977665544
|
| >2dbj_A Proto-oncogene tyrosine-protein kinase MER precursor; C-MER, receptor tyrosine kinase mertk, FN3 domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.26 E-value=6.5e-11 Score=97.16 Aligned_cols=99 Identities=19% Similarity=0.344 Sum_probs=79.7
Q ss_pred CcceeccCCCCCCC-CCcceEEE-eeeCCeeEEEecCCC-CCCCCceeceEEEEEeC-CC---CeEEeEEeecCCcEEEe
Q psy7039 2 DHSVLIKNPFDEPG-KPTDLEAT-DWDKDHVDLQWTPPI-SDGGSPITGYVVEMKDK-TG---NWEKAVVVPAGETSCTV 74 (516)
Q Consensus 2 ~~~~~~~~~~~~p~-~p~~l~~~-~~~~~~v~l~W~~p~-~~~~~~i~~Y~v~~~~~-~~---~~~~~~~~~~~~~~~~i 74 (516)
|+.+.++++++.|. +|.++++. ..++++|.|+|.+|. ...++.|.+|+|+|+.. .+ .|.. ......++++|
T Consensus 6 S~~v~~~T~~~~P~~~P~~~~~~~~~s~~sv~l~W~pp~~~~~~g~i~~Y~v~~~~~~~~~~~~~~~--~~~~~~~~~~l 83 (124)
T 2dbj_A 6 SGWILASTTEGAPSVAPLNVTVFLNESSDNVDIRWMKPPTKQQDGELVGYRISHVWQSAGISKELLE--EVGQNGSRARI 83 (124)
T ss_dssp CCCCCCCCSSCCCCSCCEEEEEEECSSSSEEEEEEECCSCCSTTCCEEEEEEEEEEEETTEEEEEEE--EEESTTSCEEE
T ss_pred CCCEEEEccCCCCCCCCcceEEEecCCCCEEEEEEcCCCcccCCCeEeEEEEEEEECCCCCccceEE--EeCCCcceEEe
Confidence 67888999999987 99999998 588999999999983 23445799999999742 22 2322 23457889999
Q ss_pred CCCcCCCeEEEEEEEecCCCCCCCCCCC
Q psy7039 75 PGLIEGETYQFQVRAVNAAGPGEASKPT 102 (516)
Q Consensus 75 ~~l~~~~~y~~~~~a~n~~g~~~~s~~~ 102 (516)
.+|.++..|.|+|+|.|..|.+..+...
T Consensus 84 ~~L~p~t~Y~~~V~A~n~~G~Gp~S~~~ 111 (124)
T 2dbj_A 84 SVQVHNATCTVRIAAVTRGGVGPFSDPV 111 (124)
T ss_dssp ECCCSSSEEEECEEEEESSCBCCCCCCE
T ss_pred cCCCCCCEEEEEEEEECCCccCCCCCCE
Confidence 9999999999999999999998876543
|
| >1x9q_A SCFV, 4M5.3 anti-fluorescein single chain antibody fragment; VERY high affinity, antibody binding, electrostatics, directed evolution; HET: FLU; 1.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.26 E-value=1.1e-10 Score=109.82 Aligned_cols=173 Identities=13% Similarity=0.091 Sum_probs=106.7
Q ss_pred ccccCCceEEEEEEEEccCCCC-----Cceecccccc-------------------cceEEEEEecceeeEEEccCCCCC
Q psy7039 236 NNVHEGKAYEYRVSAVNAAGTE-----KPKISLDALI-------------------GKRIKEFVTSTTASLNIKNSVRKD 291 (516)
Q Consensus 236 ~~l~~g~~~~~~~~~~~~~g~p-----~p~i~W~~~~-------------------~~~~~~~~~~~~~~l~i~~l~~~d 291 (516)
..+.+|+.+.|.|.+ .+.+ .+.+.|.+.. ..++..........|.|.+++.+|
T Consensus 25 ~~v~~G~~v~L~C~~---~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D 101 (268)
T 1x9q_A 25 LPVSLGDQASISCRS---SQSLVHSNGNTYLRWYLQKPGQSPKVLIYKVSNRVSGVPDRFSGSGSGTDFTLKINRVEAED 101 (268)
T ss_dssp ECCCTTCCEEEEEEE---SSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGG
T ss_pred EEecCCCCEEEEeEe---cCCcccccCCceEEEEEECCCCCCEEEEEecCCCCCCCcccEEEEcCCCEEEEEECCCChhH
Confidence 356789999999997 5555 4789996421 123333334456789999999999
Q ss_pred ceEEEEEEEecCCC-cceeEEEEEecCCC--CCC-CC---ceeeecc-CCeeEEEecCCCCCCCCceeeccccccccccc
Q psy7039 292 SGIYKIEAKNDYGI-DMADIEVVVVSKPG--PPT-GP---IDYTTVT-PESVSMSWKPPVDDGGTPITGAPKITSDLSIR 363 (516)
Q Consensus 292 ~g~y~c~a~n~~g~-~~~~~~l~v~~~p~--~p~-~p---~~~~~~~-~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~ 363 (516)
+|.|.|.+.|..+. ......|.|...+. .|. .| +.+.... ...+.+ ..+.
T Consensus 102 sG~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~~p~~pp~~~~~~~~~~~~~~v~~----------------------~~~~ 159 (268)
T 1x9q_A 102 LGVYFCSQSTHVPWTFGGGTKLEIKSSADDAKKDAAKKDDAKKDDAKKDGGVKL----------------------DETG 159 (268)
T ss_dssp CEEEEEEECSSSSCEECCCEEEC------------------------CGGGCEE----------------------EEEC
T ss_pred CEEEEEEEecCCCceEcCCEEEEEccCccCCCccccccccccccccccccceEE----------------------ECCC
Confidence 99999999987543 12234565554332 000 00 0000000 000001 1123
Q ss_pred cEEEEcCCeEEEEEEEeeecC--CceEEEECC--eec-------------------CCCCceEEEEc--CCeEEEEEcCc
Q psy7039 364 DMTVLAGEEFTITVPFSGRPK--PTPIWTVNG--DEV-------------------SPDGRIKFETS--ENQTIYRNKSA 418 (516)
Q Consensus 364 ~~~v~~g~~~~l~C~~~g~p~--~~i~W~~~~--~~l-------------------~~~~~~~~~~~--~~~~~l~i~~~ 418 (516)
...+.+|+.+.|.|.+.+.+. +.+.|+++. ..+ ....++.+... .....|.|.++
T Consensus 160 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v 239 (268)
T 1x9q_A 160 GGLVQPGGAMKLSCVTSGFTFGHYWMNWVRQSPEKGLEWVAQFRNKPYNYETYYSDSVKGRFTISRDDSKSSVYLQMNNL 239 (268)
T ss_dssp CEEECTTCCEEEEEEEESSCGGGCEEEEEEEETTTEEEEEEEECCGGGTTCEEECTTTTTTEEEEEEGGGTEEEEEECSC
T ss_pred ceEecCCCcEEEEEEecCccccccEEEEEEeCCCCCcEEEEEEcccccccccccCCccCCeEEEEEeCCCCEEEEEECCC
Confidence 467889999999999988753 789998852 211 12345665432 34578999999
Q ss_pred eecCCceEEEEEEEcC
Q psy7039 419 KRATDSGSYTIQLVNT 434 (516)
Q Consensus 419 ~~~~~~g~y~c~a~n~ 434 (516)
.. .|+|.|.|.|.|.
T Consensus 240 ~~-~DsG~Y~C~a~~~ 254 (268)
T 1x9q_A 240 RV-EDTGIYYCTGASY 254 (268)
T ss_dssp CG-GGCEEEEEEEEET
T ss_pred CH-HHCEEEEEEEccC
Confidence 99 9999999999985
|
| >2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.26 E-value=3.9e-11 Score=94.35 Aligned_cols=87 Identities=24% Similarity=0.282 Sum_probs=76.7
Q ss_pred cccccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCcee
Q psy7039 360 LSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDS 439 (516)
Q Consensus 360 ~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s 439 (516)
..+.+..+..|+.+.|.|.+ .|.+.+.|+++|..+..+.++.+...+....|.|.++.. .|+|.|+|.|.|. ..+
T Consensus 12 ~~~~~~~v~~G~~v~l~C~v--~p~p~v~W~k~g~~l~~~~r~~i~~~~~~~~L~I~~v~~-~D~G~Y~C~a~N~--~~~ 86 (100)
T 2yuz_A 12 TPLTDQTVNLGKEICLKCEI--SENIPGKWTKNGLPVQESDRLKVVQKGRIHKLVIANALT-EDEGDYVFAPDAY--NVT 86 (100)
T ss_dssp BCCCCEEEETTSCCCEEEEC--SSCCCEEEEETTEECCCCSSEEEEECSSEEEEEESSCCG-GGCSEEEEEESSS--CCC
T ss_pred ccCCceEEcCCCCEEEEEEe--CCCCeEEEEECCEECCCCCcEEEEEeCCEEEEEECCCCh-hhCEEEEEEEcCC--Cee
Confidence 34567889999999999999 788899999999999888898888877778999999999 9999999999998 556
Q ss_pred EEEEEEEecCCC
Q psy7039 440 ASCKVYVVDKPS 451 (516)
Q Consensus 440 ~s~~l~v~~~p~ 451 (516)
.++.|.|..+|.
T Consensus 87 ~~a~L~V~~~P~ 98 (100)
T 2yuz_A 87 LPAKVHVISGPS 98 (100)
T ss_dssp EEEEEEEECCSC
T ss_pred EEEEEEEeCCCC
Confidence 778888887654
|
| >2lu7_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.26 E-value=2.6e-11 Score=91.77 Aligned_cols=81 Identities=23% Similarity=0.466 Sum_probs=70.6
Q ss_pred cccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEE
Q psy7039 362 IRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSAS 441 (516)
Q Consensus 362 ~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s 441 (516)
+.++.+.+|+.+.|.|.+.+ |.|.+.|+++|..+..+.++.+...+....|.|.++.. .|+|.|+|.|. ..+.+
T Consensus 3 lt~v~~~~G~~v~l~C~vs~-p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~-~D~G~Y~C~a~----n~~~~ 76 (84)
T 2lu7_A 3 MTRVRSTPGGDLELVVHLSG-PGGPVRWYKDGERLASQGRVQLEQAGARQVLRVQGARS-GDAGEYLCDAP----QDSRI 76 (84)
T ss_dssp CCCEEECTTSCEEEECCCSC-CSTTCEEEETTEECCCCSSEEEEECSSCEEEEESSCSS-TTCEEEEEECT----TTCEE
T ss_pred CeEEEEecCCCEEEEEEECC-CCcEEEEEECCEEccccccEEEeecCCeEEEEecCCCC-cccEEEEEEEC----CEEEE
Confidence 45678999999999999966 88899999999999988899988888888999999999 99999999984 45667
Q ss_pred EEEEEec
Q psy7039 442 CKVYVVD 448 (516)
Q Consensus 442 ~~l~v~~ 448 (516)
+.|.|..
T Consensus 77 a~l~V~e 83 (84)
T 2lu7_A 77 FLVSVEE 83 (84)
T ss_dssp EEEEECC
T ss_pred EEEEEEC
Confidence 7787764
|
| >2dju_A Receptor-type tyrosine-protein phosphatase F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.26 E-value=5e-11 Score=94.78 Aligned_cols=90 Identities=26% Similarity=0.404 Sum_probs=74.3
Q ss_pred CCCCCCCCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCC--CeEEeEEeecCCcEEEeCCCcCCCeEEEE
Q psy7039 9 NPFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTG--NWEKAVVVPAGETSCTVPGLIEGETYQFQ 86 (516)
Q Consensus 9 ~~~~~p~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~--~~~~~~~~~~~~~~~~i~~l~~~~~y~~~ 86 (516)
+..++|++|.++++..++++++.|+|.+| +++.|.+|.|+|+..+. .|..+. ....+.+.|.+|++++.|.|+
T Consensus 3 t~~~~P~~P~~~~~~~~~~~sv~l~W~~~---~~~~i~~Y~v~~~~~~~~~~~~~~~--~~~~~~~~i~~L~p~t~Y~~~ 77 (106)
T 2dju_A 3 SGSSGPKPPIDLVVTETTATSVTLTWDSG---NSEPVTYYGIQYRAAGTEGPFQEVD--GVATTRYSIGGLSPFSEYAFR 77 (106)
T ss_dssp CCCCSCCCCEEEEEEEEETTEEEEEEECC---CSSCCSEEEEEEEETTCCSCCCCBC--CCCSSEEEEESCCTTCEEEEE
T ss_pred CCCcCCcCCCCcEEEeccCCEEEEEEcCC---CCCCceEEEEEEEECCCCCCeEEcc--CCCccEEEEeCCCCCcEEEEE
Confidence 34678999999999999999999999986 24679999999988654 565432 235788999999999999999
Q ss_pred EEEecCCCCCCCCCCCc
Q psy7039 87 VRAVNAAGPGEASKPTA 103 (516)
Q Consensus 87 ~~a~n~~g~~~~s~~~~ 103 (516)
|+|.|..|.+.++....
T Consensus 78 V~A~n~~G~~~~S~~~~ 94 (106)
T 2dju_A 78 VLAVNSIGRGPPSEAVR 94 (106)
T ss_dssp EEEECSSCBCCCCCCEE
T ss_pred EEEEeCCccCCCcccEE
Confidence 99999999988765443
|
| >3fl7_A Ephrin receptor; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase, glycoprotein; HET: NAG; 2.50A {Homo sapiens} PDB: 2x10_A* 2x11_A 3mx0_A* 3mbw_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=1.2e-10 Score=119.07 Aligned_cols=180 Identities=22% Similarity=0.233 Sum_probs=113.4
Q ss_pred CCCCCCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCC---CeEEe--------EEeecCCcEEEeCCCcC
Q psy7039 11 FDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTG---NWEKA--------VVVPAGETSCTVPGLIE 79 (516)
Q Consensus 11 ~~~p~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~---~~~~~--------~~~~~~~~~~~i~~l~~ 79 (516)
..+|++|.++.. .+++++|.|+|.+|...++.++.+|.|+++..+. .|... .......++++|.+|.+
T Consensus 331 t~pPsaP~nl~~-~vs~tSv~LsW~pP~~~gG~~i~~Y~V~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~ts~tI~gL~P 409 (536)
T 3fl7_A 331 TRPPSAPHYLTA-VGMGAKVELRWTPPQDSGGREDIVYSVTCEQCWPESGECGPCEASVRYSEPPHGLTRTSVTVSDLEP 409 (536)
T ss_dssp BCCCCCBSCEEE-ECCTTSEEEEECCBSCCCSCSCCEEEEEEEEECC-CCCEEECCTTCEESSCSSSBCSSEEEEECCCT
T ss_pred ccCCCcccceEE-EecCCEEEEEEeCCcCCCCCceeEEEEEEEeccCCCCcccccCCCceEEEeecCCccceeEeCCCCC
Confidence 358999999954 6899999999999986777789999999987321 23221 11223578999999999
Q ss_pred CCeEEEEEEEecCCCCCCCCCCCcceEeccCCCCCccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCc
Q psy7039 80 GETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANST 159 (516)
Q Consensus 80 ~~~y~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~ 159 (516)
++.|.|+|+|.|..|.+.++..+..+.......+|.- +.+ ...
T Consensus 410 ~T~Y~frV~A~N~~G~~sps~~s~~v~v~T~~~~Ps~-------~~~----------~~~-------------------- 452 (536)
T 3fl7_A 410 HMNYTFTVEARNGVSGLVTSRSFRTASVSINQTEPPK-------VRL----------EGR-------------------- 452 (536)
T ss_dssp TCEEEEEEEEECTTGGGCSCCCEEEEEEECCSCCCCE-------EEE----------EEC--------------------
T ss_pred CCEEEEEEEEEecCCCCCCCCccceeEEeecccCCCC-------Cce----------eec--------------------
Confidence 9999999999998887443333444444443334421 111 111
Q ss_pred cceeecCcCceeeEEeeCCeeeccCCceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCc-eEEEEEeeceeeeeccc
Q psy7039 160 KGWVKLSEPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGT-ATASAHVTGTEFTDNNV 238 (516)
Q Consensus 160 ~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~-~~~~~~~~~~~~~~~~l 238 (516)
+.....+.|......-.... .|...+....+. ...........+.+.+|
T Consensus 453 ------s~tSV~LsW~pP~~~ng~I~------------------------~Y~V~y~~~~~~~~~~~v~~~~ts~~l~gL 502 (536)
T 3fl7_A 453 ------STTSLSVSWSIPPPQQSRVW------------------------KYEVTYRKKGDSNSYNVRRTEGFSVTLDDL 502 (536)
T ss_dssp ------CC-CCEEEEECCTTTTTTCS------------------------EEEEEEEEC--CCCCEEEEESSSEEECCSC
T ss_pred ------cCCeEEEEEECCcCCCCccc------------------------EEEEEEEECCCCceEEEEcCCCCEEEECCC
Confidence 34566788875421100001 344444332222 12223345567788999
Q ss_pred cCCceEEEEEEEEccCCCCC
Q psy7039 239 HEGKAYEYRVSAVNAAGTEK 258 (516)
Q Consensus 239 ~~g~~~~~~~~~~~~~g~p~ 258 (516)
.+++.|.++|.|.+..|..+
T Consensus 503 ~P~T~Y~frVrA~n~~G~Gp 522 (536)
T 3fl7_A 503 APDTTYLVQVQALTQEGQGA 522 (536)
T ss_dssp CSSCEEEEEEEEECC---CE
T ss_pred CCCCEEEEEEEEEcCCcccC
Confidence 99999999999999888643
|
| >1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=5.3e-11 Score=106.34 Aligned_cols=156 Identities=10% Similarity=0.066 Sum_probs=107.2
Q ss_pred cccCCceEEEEEEEEccCCCCCc--eecccccccceEEEEEecceeeEEEccCCCCCceEEEEEEEecCCCcceeEEEEE
Q psy7039 237 NVHEGKAYEYRVSAVNAAGTEKP--KISLDALIGKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVV 314 (516)
Q Consensus 237 ~l~~g~~~~~~~~~~~~~g~p~p--~i~W~~~~~~~~~~~~~~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~~~~l~v 314 (516)
.+..|....+.|.+ |.|.| .+.|.+................|.|.+++.+|+|.|.|.|.|..+.....+.|.|
T Consensus 18 ~v~~G~sv~L~C~a----~~p~P~~~i~W~~~~~~l~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~~~~~ltV 93 (210)
T 1gsm_A 18 AVALGASRQLTCRL----ACADRGASVQWRGLDTSLGAVQSDTGRSVLTVRNASLSAAGTRVCVGSCGGRTFQHTVQLLV 93 (210)
T ss_dssp EEETTCCEEEEEEE----CCSSTTCEEEEESSTTTTCCEEEESSEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred EEeCCCCEEEEEEC----CCCCCCcceEEeecccccCcEEecCCccEEEECccCcccCceEEEEEEeCCCceEEEEEEEE
Confidence 56789999999987 34555 9999774322122333466788999999999999999999999888778889999
Q ss_pred ecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeee-cC----CceEE
Q psy7039 315 VSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGR-PK----PTPIW 389 (516)
Q Consensus 315 ~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~-p~----~~i~W 389 (516)
..+|..+.. . . .....|+.. |.|.+.+. |. +.|.|
T Consensus 94 ~~~P~~~~i----~----------------------------------~-~~~~~g~~~-l~C~a~g~~P~~~~~lti~W 133 (210)
T 1gsm_A 94 YAFPNQLTV----S----------------------------------P-AALVPGDPE-VACTAHKVTPVDPNALSFSL 133 (210)
T ss_dssp EBCCSEEEE----E----------------------------------S-SSBCTTCCE-EEEEEEEEBCCCTTTEEEEE
T ss_pred EecCCCcEE----c----------------------------------c-ceEEeCCce-EEEEeCCCCCCCCCCcEEEE
Confidence 877654210 0 0 123467777 99999986 53 37999
Q ss_pred EECCeecCCCCce--EEEE----c--CC------eEEEEEcCceecCCceEEEEEEEcCCCc
Q psy7039 390 TVNGDEVSPDGRI--KFET----S--EN------QTIYRNKSAKRATDSGSYTIQLVNTVGS 437 (516)
Q Consensus 390 ~~~~~~l~~~~~~--~~~~----~--~~------~~~l~i~~~~~~~~~g~y~c~a~n~~G~ 437 (516)
++++..+...... .... . .. .+.+.+..... ++.+.|+|.|.+.+-.
T Consensus 134 lk~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~vts~~~~~~~~~-D~~~~~tC~a~~~L~~ 194 (210)
T 1gsm_A 134 LVGGQELEGAQALGPEVQEEEEEPQGDEDVLFRVTERWRLPPLGT-PVPPALYCQATMRLPG 194 (210)
T ss_dssp EETTEECTTCEECCCEEEECTTCCSSCCCCCEEEEEEEECCCCCS-SCCSEEEEEEEEEETT
T ss_pred EECCEEcccccccccceecccccccCCcceEEEEEEEEeecCCcc-cCCceEEEEEEeeCCC
Confidence 9999988543210 1100 0 01 12344545555 7778999999988643
|
| >2edb_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.25 E-value=3.7e-11 Score=97.32 Aligned_cols=92 Identities=20% Similarity=0.363 Sum_probs=75.3
Q ss_pred eeccCCC-CCCCCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCCCeEEeEEeecCCcEEEeCCCcCCCeE
Q psy7039 5 VLIKNPF-DEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVVVPAGETSCTVPGLIEGETY 83 (516)
Q Consensus 5 ~~~~~~~-~~p~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y 83 (516)
+...+++ ++|++|.+|++..++ ++|.|+|.+|... ++.|.+|.|+|+.... +..........++++|.+|++++.|
T Consensus 8 ~~~~t~e~~~P~~P~~l~~~~~~-~sv~l~W~~P~~~-ng~i~gY~i~y~~~~~-~~~~~~~~~~~~~~~l~~L~p~t~Y 84 (116)
T 2edb_A 8 PENDLDESQVPDQPSSLHVRPQT-NCIIMSWTPPLNP-NIVVRGYIIGYGVGSP-YAETVRVDSKQRYYSIERLESSSHY 84 (116)
T ss_dssp SSSSCBCSSCCCCCSCEEEEECS-SCEEEEECCCSCT-TBCCCEEEEEEEESST-TSEEEEEETTCCEEEECSCCSSSBE
T ss_pred ccccCCCCCCCCCCCCeEEEECC-CEEEEEEcCCCCC-CCceeEEEEEEEeCCC-CeEEEEeCCCeeEEEeCCCCCCCEE
Confidence 4455666 899999999999888 9999999999644 4679999999986443 3333345567899999999999999
Q ss_pred EEEEEEecCCCCCCCC
Q psy7039 84 QFQVRAVNAAGPGEAS 99 (516)
Q Consensus 84 ~~~~~a~n~~g~~~~s 99 (516)
.|+|+|.|..|.+.++
T Consensus 85 ~~~V~A~n~~G~g~~~ 100 (116)
T 2edb_A 85 VISLKAFNNAGEGVPL 100 (116)
T ss_dssp EEEEEEEETTEECSCE
T ss_pred EEEEEEEeCCccCCCC
Confidence 9999999999988754
|
| >1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4 | Back alignment and structure |
|---|
Probab=99.25 E-value=3.3e-11 Score=94.50 Aligned_cols=89 Identities=19% Similarity=0.226 Sum_probs=74.5
Q ss_pred CCccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEe-e
Q psy7039 113 APRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQ-T 191 (516)
Q Consensus 113 ~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~-~ 191 (516)
+|.|. ..+..+.+.+|+.+.|.|.+. |.|.+.+.|++++..+....++.+. .
T Consensus 5 ~P~~~-~~~~~~~v~~G~~v~l~C~~~--------------------------g~p~p~v~W~k~g~~~~~~~~~~~~~~ 57 (99)
T 1g1c_A 5 APKIF-ERIQSQTVGQGSDAHFRVRVV--------------------------GKPDPECEWYKNGVKIERSDRIYWYWP 57 (99)
T ss_dssp EEEEE-ECCCCEEEETTSCEEEEEEEE--------------------------EESCCEEEEEETTEECCCCSSEEEEEE
T ss_pred CCceE-ecCcceEEcCCCcEEEEEEEE--------------------------EeCCCEEEEEECCEECCCCCCEEEEEc
Confidence 55565 566778899999999999999 9999999999999999877666543 3
Q ss_pred cCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEEe
Q psy7039 192 TKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHV 228 (516)
Q Consensus 192 ~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~ 228 (516)
.+....|.|.+++.+|+|.|+|.+.|..|.......+
T Consensus 58 ~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~~l 94 (99)
T 1g1c_A 58 EDNVCELVIRDVTGEDSASIMVKAINIAGETSSHAFL 94 (99)
T ss_dssp ETTEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred CCCEEEEEECCCCcCCCEEEEEEEEECCCcEEEEEEE
Confidence 4567799999999999999999999999887665543
|
| >2ed8_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.25 E-value=4.7e-11 Score=95.00 Aligned_cols=89 Identities=21% Similarity=0.377 Sum_probs=74.6
Q ss_pred CCCCCCCCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCC-CeEEeEEeecCCcEEEeCCCcCCCeEEEEE
Q psy7039 9 NPFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTG-NWEKAVVVPAGETSCTVPGLIEGETYQFQV 87 (516)
Q Consensus 9 ~~~~~p~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~-~~~~~~~~~~~~~~~~i~~l~~~~~y~~~~ 87 (516)
..++.|++|.+|++..++++++.|+|.+|. ..++.|.+|+|+|+..+. .|.... ...+++.|.+|++++.|.|+|
T Consensus 3 s~~~~P~~P~~l~~~~~~~~si~l~W~~p~-~~~g~i~~Y~v~~~~~~~~~~~~~~---~~~~~~~i~~L~p~t~Y~~~V 78 (106)
T 2ed8_A 3 SGSSGPGPVENLQAVSTSPTSILITWEPPA-YANGPVQGYRLFCTEVSTGKEQNIE---VDGLSYKLEGLKKFTEYSLRF 78 (106)
T ss_dssp CCCCCCCCCEEEEEECSSTTEEEEEEECCS-SCSSCCCEEEEEEEETTTCCEEEEE---ECSSCEEEESCCTTCEEEEEE
T ss_pred CCCCCCcCCceeEEEecCCCEEEEEECCCC-CCCCCeeEEEEEEEECCCCceEEEe---CCccEEEECCCCCCCEEEEEE
Confidence 457899999999999999999999999986 344579999999998766 564432 247899999999999999999
Q ss_pred EEecCCCCCCCCCC
Q psy7039 88 RAVNAAGPGEASKP 101 (516)
Q Consensus 88 ~a~n~~g~~~~s~~ 101 (516)
+|.|..|.+.++..
T Consensus 79 ~A~n~~G~g~~S~~ 92 (106)
T 2ed8_A 79 LAYNRYGPGVSTDD 92 (106)
T ss_dssp EEECSSCEEEECCC
T ss_pred EEEeCCccCCCcCC
Confidence 99999998776543
|
| >1i1r_A GP130, interleukin-6 receptor beta chain; cytokine/receptor complex, GP130; 2.40A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1p9m_A | Back alignment and structure |
|---|
Probab=99.25 E-value=5e-11 Score=114.32 Aligned_cols=86 Identities=20% Similarity=0.165 Sum_probs=68.7
Q ss_pred CCCCCCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCCCeEEeEEeecCCcEEEeCCC-cCCCeEEEEEEE
Q psy7039 11 FDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVVVPAGETSCTVPGL-IEGETYQFQVRA 89 (516)
Q Consensus 11 ~~~p~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~i~~l-~~~~~y~~~~~a 89 (516)
..+|++|.+|.+.....+++.|+|.+|. +++. +.+|.|+++..++.+..+........++.|.+| .++..|.|+|.|
T Consensus 101 ~~~P~~P~~l~~~~~~~~~v~l~W~~~~-~~~~-~~~Y~v~~~~~~~~~~~~~~~~~~~~~~~i~~L~~p~t~Y~f~V~A 178 (303)
T 1i1r_A 101 GLPPEKPKNLSCIVNEGKKMRCEWDGGR-ETHL-ETNFTLKSEWATHKFADCKAKRDTPTSCTVDYSTVYFVNIEVWVEA 178 (303)
T ss_dssp ECCCCCCEEEEEEEETTSCCEEEEECCS-CCSS-CCEEEEEEEETTEECCCEECCSSCTTEEECSSCCCTTSCEEEEEEE
T ss_pred cCCCCCCeeeEEEECCCCcEEEEccCCC-CCCC-CcCEEEEEEecCCCCccCCCcCCCceEEEECCcCcccccEEEEEEE
Confidence 4689999999999888899999999985 3443 679999998765433233334456789999999 999999999999
Q ss_pred ecCCCCCCC
Q psy7039 90 VNAAGPGEA 98 (516)
Q Consensus 90 ~n~~g~~~~ 98 (516)
.|..|.+.+
T Consensus 179 ~N~~G~~~s 187 (303)
T 1i1r_A 179 ENALGKVTS 187 (303)
T ss_dssp EETTEEEEC
T ss_pred EcCCCCccc
Confidence 999987653
|
| >3bn9_D E2 FAB heavy chain; antibody-protease complex, protein-protein complex, enzyme- inhibitor complex, disease mutation, glycoprotein, hydrolase; 2.17A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 3kr3_H 2xtj_E | Back alignment and structure |
|---|
Probab=99.24 E-value=2.3e-10 Score=106.69 Aligned_cols=126 Identities=13% Similarity=0.065 Sum_probs=67.1
Q ss_pred ceeeEEEccCCCCCceEEEEEEEecCCC-------------cceeEEEEEecCCC-CCCCCceeeeccCCeeEEEecCCC
Q psy7039 278 TTASLNIKNSVRKDSGIYKIEAKNDYGI-------------DMADIEVVVVSKPG-PPTGPIDYTTVTPESVSMSWKPPV 343 (516)
Q Consensus 278 ~~~~l~i~~l~~~d~g~y~c~a~n~~g~-------------~~~~~~l~v~~~p~-~p~~p~~~~~~~~~~~~l~W~~p~ 343 (516)
....|.|.+++.+|+|.|.|.+.+..|. ......|.|...+. +|. +.+
T Consensus 77 ~~~sL~I~~v~~~DsG~Y~C~~~~~~g~~~~~~~~~~~~~~~~~~t~L~V~~~~~~~P~--v~~---------------- 138 (257)
T 3bn9_D 77 NTLYLQMSSLRAEDTAVYYCARPYLTYPQRRGPQNVSPFDNWGQGTMVTVSSASTKGPS--VFP---------------- 138 (257)
T ss_dssp TEEEEEEESCCGGGCEEEEEEEECCSSTTSCCCCTTCCEEEECCCEEEEECSSCCBCCE--ECC----------------
T ss_pred CEEEEEECCCChhhCEEEEEEEecCCCcccccccccceeeeeCCcEEEEecCCCCcCCc--EEE----------------
Confidence 4568999999999999999999987651 11234666664221 111 000
Q ss_pred CCCCCceeeccccccccccccEEEEcCCeEEEEEEEeee-cCC-ceEEEECCeecCCCCceEEEEcCC----eEEEEEcC
Q psy7039 344 DDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGR-PKP-TPIWTVNGDEVSPDGRIKFETSEN----QTIYRNKS 417 (516)
Q Consensus 344 ~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~-p~~-~i~W~~~~~~l~~~~~~~~~~~~~----~~~l~i~~ 417 (516)
......+..|..+.|.|.+.|. |.+ .|.|++++..+...........++ .+.|.|..
T Consensus 139 -----------------~~p~~~~~~g~~v~L~C~~~g~~P~pi~v~W~k~g~~~~~~~~~~~~~~~g~y~~~s~L~I~~ 201 (257)
T 3bn9_D 139 -----------------LAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPS 201 (257)
T ss_dssp -----------------CCC-----------CCCEEEEEBSSCCEEEETTTTCCSSCEECCCEECTTSCEEEEEECCCC-
T ss_pred -----------------ecCcccccCCCcEEEEEEEeeEECCCcEEEEeeCCCcCCcEecCCeEcCCCCEEEEEEEEEcc
Confidence 0011134678899999999986 777 899999887532110000111111 24578888
Q ss_pred ceecCCceEEEEEEEcCCCceeE
Q psy7039 418 AKRATDSGSYTIQLVNTVGSDSA 440 (516)
Q Consensus 418 ~~~~~~~g~y~c~a~n~~G~~s~ 440 (516)
+.. .+ |.|+|.|.|.......
T Consensus 202 ~~~-~~-g~YtC~v~n~~~~~~~ 222 (257)
T 3bn9_D 202 SSL-GT-QTYICNVNHKPSNTKV 222 (257)
T ss_dssp --------CEEEEEEEGGGTEEE
T ss_pred ccc-CC-CeEEEEEEecCCCcCE
Confidence 877 77 9999999997654433
|
| >2dn7_A Receptor-type tyrosine-protein phosphatase F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 | Back alignment and structure |
|---|
Probab=99.24 E-value=4.1e-11 Score=95.48 Aligned_cols=90 Identities=28% Similarity=0.419 Sum_probs=75.9
Q ss_pred cCCCCCCCCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCC-CeEEeEEeecCCcEEEeCCCcCCCeEEEE
Q psy7039 8 KNPFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTG-NWEKAVVVPAGETSCTVPGLIEGETYQFQ 86 (516)
Q Consensus 8 ~~~~~~p~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~-~~~~~~~~~~~~~~~~i~~l~~~~~y~~~ 86 (516)
++.++.|++|. +.+...++++|.|+|.+|. +.++.|.+|.|+|+..+. .|... ......++++|.+|++++.|.|+
T Consensus 2 ~T~~~~P~~p~-~~v~~~~~~sv~l~W~~p~-~~~g~i~~Y~v~~~~~~~~~~~~~-~~~~~~~~~~i~~L~p~t~Y~~~ 78 (107)
T 2dn7_A 2 SSGSSGPGRPT-MMISTTAMNTALLQWHPPK-ELPGELLGYRLQYCRADEARPNTI-DFGKDDQHFTVTGLHKGTTYIFR 78 (107)
T ss_dssp TTCCCCCCCCE-EEEEECSTTEEEEEEECCS-SCSSCCCEEEEEEEETTCSSCEEE-EEETTCCEEEEECCCTTCEEEEE
T ss_pred CCCCCCCCCCc-EeEEecCCCEEEEEECCCC-CCCCceeEEEEEEEECCCCCCEEE-EeCCCccEEEeCCCCCCCEEEEE
Confidence 46788999888 7888788999999999986 555679999999998766 67654 44467889999999999999999
Q ss_pred EEEecCCCCCCCCC
Q psy7039 87 VRAVNAAGPGEASK 100 (516)
Q Consensus 87 ~~a~n~~g~~~~s~ 100 (516)
++|.|..|.+.++.
T Consensus 79 V~A~n~~G~g~~s~ 92 (107)
T 2dn7_A 79 LAAKNRAGLGEEFE 92 (107)
T ss_dssp EEEEETTEEEEEEE
T ss_pred EEEEcCCcccCCee
Confidence 99999999887654
|
| >2lvc_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.24 E-value=1.7e-11 Score=94.34 Aligned_cols=78 Identities=13% Similarity=0.126 Sum_probs=65.7
Q ss_pred CCccccCcccc--eEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEe
Q psy7039 113 APRIDRSTLND--VKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQ 190 (516)
Q Consensus 113 ~p~~~~~~~~~--~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~ 190 (516)
||.|. .+... +.+.+|+.+.|.|.+. + |.+.+.|++++..+....++.+.
T Consensus 4 P~~i~-~p~~~~~v~~~~g~~v~l~C~v~--------------------------~-p~~~v~W~k~g~~i~~~~~~~i~ 55 (91)
T 2lvc_A 4 PVHIV-DPREHVFVHAITSECVMLACEVD--------------------------R-EDAPVRWYKDGQEVEESDFVVLE 55 (91)
T ss_dssp CCCCC-BCCSCEEEECCTTCCEEEEEECS--------------------------C-TTSCCEEEETTSCCCCCSSCEEE
T ss_pred CcEEe-ccCCCeEEEEECCCcEEEEEEEC--------------------------C-CCcEEEEEECCEEeeeeeeeeEE
Confidence 44444 44444 4456899999999987 6 77889999999999999999998
Q ss_pred ecCCeeEEEeccCCCCCCeeEEEEEEcC
Q psy7039 191 TTKSETVLDIPFCSRSDTGHYSLTLENN 218 (516)
Q Consensus 191 ~~~~~~~l~i~~~~~~d~g~Y~c~~~~~ 218 (516)
..+...+|.|.+++.+|+|.|+|.+.|.
T Consensus 56 ~~~~~~~L~I~~v~~~D~G~Y~C~a~n~ 83 (91)
T 2lvc_A 56 NEGPHRRLVLPATQPSDGGEFQCVAGDE 83 (91)
T ss_dssp EETTEEEEEESSCCGGGCSEEEEECSSC
T ss_pred ecCCeEEEEeCCCChhhcEEEEEEEcce
Confidence 8888899999999999999999998764
|
| >3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.24 E-value=3.6e-11 Score=110.87 Aligned_cols=171 Identities=14% Similarity=0.173 Sum_probs=112.4
Q ss_pred eeCCeeEEEecCCCCCCCCceeceEEEEEeCCCCeE-----EeEEeecCCcEEEeCCCcCCCeEEEEEEEecCCCCCCCC
Q psy7039 25 WDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWE-----KAVVVPAGETSCTVPGLIEGETYQFQVRAVNAAGPGEAS 99 (516)
Q Consensus 25 ~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~~~~-----~~~~~~~~~~~~~i~~l~~~~~y~~~~~a~n~~g~~~~s 99 (516)
.....+.|.+.... .+. -.+.|...+.... ..........+|.|.+++..|.|.|+|.|.|..|....
T Consensus 28 ~~G~~v~L~C~~~~----~p~--~~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~- 100 (241)
T 3grw_A 28 PAANTVRFRCPAAG----NPT--PSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQ- 100 (241)
T ss_dssp ETTSEEEEECCEEC----SSC--CEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEEEEE-
T ss_pred cCCCeEEEEEEecC----CCC--ceeEEEECCcccCCCCcccceeeeccceEEEEEeCCcccCEEEEEEEeecCCceEE-
Confidence 45677888887631 111 1344444332100 00112234668999999999999999999987664321
Q ss_pred CCCcceEec-cCCCCCccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEee--
Q psy7039 100 KPTAPIVAK-PKNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSI-- 176 (516)
Q Consensus 100 ~~~~~~~~~-~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~-- 176 (516)
...+.+. ....+|.+....+....+.+|+.+.|.|.+. +.|.+.+.|++
T Consensus 101 --~~~l~V~~~~~~~~~~~~~~~~~~~~~~g~~v~L~C~~~--------------------------~~p~p~v~W~~~~ 152 (241)
T 3grw_A 101 --TYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVY--------------------------SDAQPHIQWLKHV 152 (241)
T ss_dssp --EEEEEEECCCCCCCEEEECTTCSEECCTTCCEEEEEEEE--------------------------CSSCCEEEEEEEC
T ss_pred --EEEEEEeccCCCCceeecCCCccceecCCCEEEEEEEEe--------------------------cCCCCEEEEEEcc
Confidence 1222222 1223344433456677889999999999999 99999999999
Q ss_pred --CCeeeccCCceEEe--------ecCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEEeec
Q psy7039 177 --NGQVCQIGGRADVQ--------TTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVTG 230 (516)
Q Consensus 177 --~~~~~~~~~~~~~~--------~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~~~ 230 (516)
++..+......... .......|.|.+++.+|+|.|+|.+.|..|.......+.+
T Consensus 153 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V 216 (241)
T 3grw_A 153 EVNGSKVGPDGTPYVTVLKSWISESVEADVRLRLANVSERDGGEYLCRATNFIGVAEKAFWLSV 216 (241)
T ss_dssp CSSSCSSCTTTCCCEEEEEEEECSBSEEEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEC
T ss_pred cCCCcccCCCCceeeeeeeEeeeeecCCceEEEECcCCcccCcEEEEEEecCcceEEEEEEEEe
Confidence 77766544332111 1223568999999999999999999999988766655443
|
| >3t04_D Monobody 7C12; engineered binding protein, antibody mimic, protein-protein SH2 domain, ATP-binding, phosphoprotein; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.24 E-value=1.3e-10 Score=91.85 Aligned_cols=86 Identities=21% Similarity=0.313 Sum_probs=72.4
Q ss_pred CCCCCCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCC-CeEEeEEeecCCcEEEeCCCcCCCeEEEEEEE
Q psy7039 11 FDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTG-NWEKAVVVPAGETSCTVPGLIEGETYQFQVRA 89 (516)
Q Consensus 11 ~~~p~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~-~~~~~~~~~~~~~~~~i~~l~~~~~y~~~~~a 89 (516)
...|++|.+|++..++++++.|+|.+|. +.++.|.+|+|+|...++ .+..........++++|.+|++++.|.|+++|
T Consensus 5 ~t~~~~P~~l~v~~~t~~Sv~lsW~~p~-~~~g~i~~Y~v~y~~~~~~~~~~~~~v~~~~ts~~l~~L~p~t~Y~~~V~A 83 (103)
T 3t04_D 5 SSVSSVPTKLEVVDATPTSLKISWDAYY-SSWQNVKYYRITYGETGGDSPVQEFTVPGYYSTATISGLKPGVDYTITVYA 83 (103)
T ss_dssp SCCCCCCCSCEEEEEETTEEEEECTTTT-TTSCCCCEEEEEEEETTCSSCCEEEEEETTCCEEEECSCCTTCCEEEEEEE
T ss_pred cccCCCCceeEEEecCCCEEEEEccCCC-CCCCccceEEEEEEECCCCCccEEEEcCCCcCEEEeCCCCCCCEEEEEEEE
Confidence 3568999999999999999999999985 445679999999998653 33344456677899999999999999999999
Q ss_pred ecC--CCCCC
Q psy7039 90 VNA--AGPGE 97 (516)
Q Consensus 90 ~n~--~g~~~ 97 (516)
.|. .|.+.
T Consensus 84 ~~~~~~G~~~ 93 (103)
T 3t04_D 84 YDTFFPGYEP 93 (103)
T ss_dssp ESCCCTTCCC
T ss_pred EeCCCCCCCC
Confidence 999 87766
|
| >2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.24 E-value=7.1e-11 Score=92.73 Aligned_cols=87 Identities=21% Similarity=0.335 Sum_probs=74.0
Q ss_pred cccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCce-EEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeE
Q psy7039 362 IRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRI-KFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSA 440 (516)
Q Consensus 362 ~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~-~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~ 440 (516)
+....+..|+.+.|.|.+.|.|.+.+.|++++..+....+. ......+...|.|.++.. .|+|.|+|.|.|..|..+.
T Consensus 12 p~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~-~D~G~Y~C~a~n~~g~~~~ 90 (100)
T 2kdg_A 12 PENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSLIFEVVRA-SDAGAYACVAKNRAGEATF 90 (100)
T ss_dssp CCCEEEETTCCEEEEEECEEESCCEEEEEETTEEECCCSSSCEEEETTTEEEEEESSCCG-GGCEEEEEEEEETTEEEEE
T ss_pred CCCEEecCCCEEEEEEEEEeeCCCEEEEEECCEECcCCCcEEEEEcCCCeEEEEECCCCc-ccCEEEEEEEEcCCCeEEE
Confidence 45678999999999999999999999999999888655433 333345556899999999 9999999999999999999
Q ss_pred EEEEEEecC
Q psy7039 441 SCKVYVVDK 449 (516)
Q Consensus 441 s~~l~v~~~ 449 (516)
++.|.|..+
T Consensus 91 ~~~l~V~~~ 99 (100)
T 2kdg_A 91 TVQLDVLAK 99 (100)
T ss_dssp EEEEEEECC
T ss_pred EEEEEEEec
Confidence 999998765
|
| >2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse IGG, zinc-finger, DNA-binding, RNA-binding, tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A | Back alignment and structure |
|---|
Probab=99.23 E-value=1.4e-11 Score=111.19 Aligned_cols=122 Identities=11% Similarity=0.137 Sum_probs=71.7
Q ss_pred eEEEccCCCCCceEEEEEEEecCCCcceeEEEEEe-cCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccc
Q psy7039 281 SLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVV-SKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSD 359 (516)
Q Consensus 281 ~l~i~~l~~~d~g~y~c~a~n~~g~~~~~~~l~v~-~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~ 359 (516)
.|.|.+++.+|+|.|+|.|.|..+.......+.+. ....+|. +.+. ++
T Consensus 69 ~L~I~~~~~~D~G~Y~C~a~~~~~~~~~~~~v~~~~~~~~~P~--v~~~------------~~----------------- 117 (207)
T 2vol_A 69 ELPIMHQDWLNGKEFKCRVNSAAFPAPIEKTISKTKGRPKAPQ--VYTL------------PP----------------- 117 (207)
T ss_dssp EEECCHHHHHTTCCEEEEEECTTCSSCEEEEECCCCCCCBCCE--EEEE------------CC-----------------
T ss_pred EEEEehhHcCCCCEEEEEEEccCCCCceEEEeccCCCCCcCCe--EEEe------------CC-----------------
Confidence 57788888888999999998877754222222110 1111110 0000 00
Q ss_pred cccccEEEEcCCeEEEEEEEeeecCC--ceEEEECCeecCCCCceEEEEcC-Ce----EEEEEcCceecCCceEEEEEEE
Q psy7039 360 LSIRDMTVLAGEEFTITVPFSGRPKP--TPIWTVNGDEVSPDGRIKFETSE-NQ----TIYRNKSAKRATDSGSYTIQLV 432 (516)
Q Consensus 360 ~~~~~~~v~~g~~~~l~C~~~g~p~~--~i~W~~~~~~l~~~~~~~~~~~~-~~----~~l~i~~~~~~~~~g~y~c~a~ 432 (516)
... ...|+.+.|.|.+.|.+++ .+.|+++|..+............ +. +.|.|..... ++.|.|+|.|.
T Consensus 118 -~~~---~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~l~i~~~~~-~~~g~ytC~a~ 192 (207)
T 2vol_A 118 -PKE---QMAKDKVSLTCMITDFFPEDITVEWESNGQPAENYKNTQPIMDTDGSYFVYSKLNVQKSNW-EAGNTFTCSVL 192 (207)
T ss_dssp -CTG---GGSSSEEEEEEEEEEEBSSCCEEEEEETTEECSCEEECCCEECTTSCEEEEEEEEEEHHHH-SSCCEEEEEEE
T ss_pred -CHH---HhcCCceEEEEEEeeEECCCCEEEEEECCEeccCcccCCceECCCCCEEEEEEEEECHHHc-CCCCEEEEEEE
Confidence 000 1258899999999986443 89999999877432211111111 11 2456666666 68999999999
Q ss_pred cCCCce
Q psy7039 433 NTVGSD 438 (516)
Q Consensus 433 n~~G~~ 438 (516)
|.....
T Consensus 193 n~~l~~ 198 (207)
T 2vol_A 193 HEGLHN 198 (207)
T ss_dssp CTTSGG
T ss_pred CCCCCC
Confidence 987643
|
| >1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C* | Back alignment and structure |
|---|
Probab=99.23 E-value=5.3e-11 Score=108.25 Aligned_cols=155 Identities=12% Similarity=-0.009 Sum_probs=101.5
Q ss_pred eeCCeeEEEecCCCCCCCCceeceEEEEEeCCCCeEEe-EE--eecCCc--EEEeCCCcCCCeEEEEEEEecCCCCCCCC
Q psy7039 25 WDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKA-VV--VPAGET--SCTVPGLIEGETYQFQVRAVNAAGPGEAS 99 (516)
Q Consensus 25 ~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~~~~~~-~~--~~~~~~--~~~i~~l~~~~~y~~~~~a~n~~g~~~~s 99 (516)
...+.+.|.+.... . ... +.|...+...... .. ...... .|.|.+++..|.|.|+|.|.|..|.+..+
T Consensus 21 ~~G~~vtL~C~~~~---~--~~~--~~W~k~g~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~s 93 (218)
T 1uct_A 21 PLDGSVKIQCQAIR---E--AYL--TQLMIIKNSTYREIGRRLKFWNETDPEFVIDHMDANKAGRYQCQYRIGHYRFRYS 93 (218)
T ss_dssp ETTCCEEEEECCCT---T--CSE--EEEEEEETTEEEECSEECC----CCCEEEECSCCGGGCEEEEEEEEETTTEEEEC
T ss_pred CCCCCEEEEEEcCC---C--CCE--EEEEECCCcccccccccCCCCcceeeEEEEcccccccCEEEEEEEEcCCCceeec
Confidence 45678999998731 1 122 3343333321110 00 112344 89999999999999999999976533322
Q ss_pred CCCcceEeccCCCCCccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCe
Q psy7039 100 KPTAPIVAKPKNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQ 179 (516)
Q Consensus 100 ~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~ 179 (516)
. ...+.+.....+|.+. ..+ ...+.+|+.++|.|... +.+.+.+.|++++.
T Consensus 94 ~-~~~l~V~~~~~~P~i~-~~p-~~~v~~G~~v~L~C~~~--------------------------~~~~~~~~W~k~g~ 144 (218)
T 1uct_A 94 D-TLELVVTGLYGKPFLS-ADR-GLVLMPGENISLTCSSA--------------------------HIPFDRFSLAKEGE 144 (218)
T ss_dssp C-CEEEEEECSSCCCEEE-ESS-CSEECTTCCCEEEEECS--------------------------SSCCSEEEEEETTC
T ss_pred C-CEEEEEcCcccCCEEE-eCC-CCccCCCCCEEEEEeCC--------------------------CCCCCEEEEEECCC
Confidence 2 2333333333466664 222 45788999999999767 67778999999987
Q ss_pred eeccCCceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCC
Q psy7039 180 VCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNL 219 (516)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~ 219 (516)
.+... .........|.|.+++.+|+|.|+|.+.|..
T Consensus 145 ~~~~~----~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~ 180 (218)
T 1uct_A 145 LSLPQ----HQSGEHPANFSLGPVDLNVSGIYRCYGWYNR 180 (218)
T ss_dssp SSCCS----EEECSSSEEEECCSCCGGGCEEEEEEEECTT
T ss_pred ccccc----ccCCCccCEEEEccCCcccCEEEEEEEEcCC
Confidence 66531 1124456799999999999999999998753
|
| >2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid factor IGG1-FC, immunoglobulin C region, membrane, glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 | Back alignment and structure |
|---|
Probab=99.23 E-value=1.9e-11 Score=112.36 Aligned_cols=160 Identities=10% Similarity=-0.001 Sum_probs=102.1
Q ss_pred ccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcC-ce-eeEEeeCC--eee------------ccC
Q psy7039 121 LNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEP-FL-NHGWSING--QVC------------QIG 184 (516)
Q Consensus 121 ~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~-~i~W~~~~--~~~------------~~~ 184 (516)
+..+.+.+|+.+.|.|.+. +.+ .+ .+.|+++. ..+ ...
T Consensus 26 p~~~~v~~G~~v~L~C~~~--------------------------~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~ 79 (234)
T 2j6e_L 26 PPSASGTPGQRVTISCSGS--------------------------SSNIGSNYVYWYQQLPGTAPKLLIYRNNQRPSGVP 79 (234)
T ss_dssp CSCCCBCTTCEEEEEEECC--------------------------TTTTTTSCCEEEEECSSSCCEEEEBTTTBCCSSSC
T ss_pred CCcEEeeCCCcEEEEEEec--------------------------CCCCCCCeEEEEEecCCCCcEEEEECccccCCCcc
Confidence 5567789999999999998 543 23 58887742 111 112
Q ss_pred CceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCce--E-EEEEeec-------eeeee----ccccCCceEEEEEEE
Q psy7039 185 GRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTA--T-ASAHVTG-------TEFTD----NNVHEGKAYEYRVSA 250 (516)
Q Consensus 185 ~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~--~-~~~~~~~-------~~~~~----~~l~~g~~~~~~~~~ 250 (516)
.|+.....+...+|.|.+++.+|+|.|.|.+.+..+.. . ....+.+ ..+.. .....|..+.+.|.+
T Consensus 80 ~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~~~~~~g~~v~L~C~~ 159 (234)
T 2j6e_L 80 DRFSGSKSGTSASLAISGLRSEDEADYYCATWDDSLSAVIFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLI 159 (234)
T ss_dssp TTEEEEEETTEEEEEEESCCSTTCSEEEEEEEETTTTEEEECCCBCCCBCCCCCCCCCCCEECCCHHHHTTSCCCEEECC
T ss_pred ccEEEEecCCeEEEEECCCCHHHCEEEEEEEEcCCcceeEecCCEEEEEecCCCCCCcccccCCChhHhcCCceEEEEEE
Confidence 46666555667799999999999999999999887621 1 1111111 01111 112347789999988
Q ss_pred EccCCC-CC-ceeccccccc---ceEEE---EEe-----cceeeEEEccCCCCCceEEEEEEEecCCCccee
Q psy7039 251 VNAAGT-EK-PKISLDALIG---KRIKE---FVT-----STTASLNIKNSVRKDSGIYKIEAKNDYGIDMAD 309 (516)
Q Consensus 251 ~~~~g~-p~-p~i~W~~~~~---~~~~~---~~~-----~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~~ 309 (516)
.|. |+ +.+.|.+... ..... ... .....|.|..+..+|.|.|+|.|.|..+....+
T Consensus 160 ---~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~ 228 (234)
T 2j6e_L 160 ---SDFFPGAVTVAWKADGAPVKAGVETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKT 228 (234)
T ss_dssp ---CBCSSCCCEEEEEETTEECCSSEEECCCCCCTTSCCBCCEEECCCGGGTTTSCCEEEEEEBTTBCCCEE
T ss_pred ---EEEcCCceEEEEEECCEECCCCccccCceECCCCCEEEEEEEEECHHHcCCCCeEEEEEEeCCCceEEe
Confidence 554 43 4899965211 11110 000 122468899999999999999999987664433
|
| >4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.23 E-value=8.3e-11 Score=106.08 Aligned_cols=127 Identities=5% Similarity=0.007 Sum_probs=88.9
Q ss_pred CcEEEeCCCcCCCeEEEEEEEecCCCCCCCCCCCcceEeccCCCCCccccCcccceEEecCCeEEEEEeeeeccccccCc
Q psy7039 69 ETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSP 148 (516)
Q Consensus 69 ~~~~~i~~l~~~~~y~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~ 148 (516)
..+|.|.+++..|.|.|.|.+.+..+...... ..+.... ++...........+..|+.+.+.|.+.
T Consensus 78 ~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~--~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~c~~~--------- 143 (218)
T 4frw_A 78 DGSVLLRNAVQADEGEYECRVSTFPAGSFQAR--LRLRVLV---PPLPSLNPGPALEEGQGLTLAASCTAE--------- 143 (218)
T ss_dssp BCCEEESSCCGGGCEEEEEEEEEETTEEEEEE--EEEEEEB---CCCCEEEECSCEETTCCSEEEEEEEEE---------
T ss_pred eEEEEEeeccHHHCCceeEEEEeccCceeeeE--EEEEEee---eccceeeeeeeeeeeeccccceeeecc---------
Confidence 45799999999999999999987655432211 1111111 111111344556778899999999999
Q ss_pred cccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEee-cCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEE
Q psy7039 149 LRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQT-TKSETVLDIPFCSRSDTGHYSLTLENNLGTATASA 226 (516)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~ 226 (516)
+.|.+.|+|++++..+.......... ....+.|.|.++..+|.|.|+|.+.|..|......
T Consensus 144 -----------------g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~g~~~~~~ 205 (218)
T 4frw_A 144 -----------------GSPAPSVTWDTEVKGTTSSRSFKHSRSAAVTSEFHLVPSRSMNGQPLTCVVSHPGLLQDQRI 205 (218)
T ss_dssp -----------------EBSCCEEEEEESSCCEEEEEEEECSSSEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEE
T ss_pred -----------------CCcCceEEEEECCcccccCceEecCCcEEEEEEEEEeeCCHHhCeEEEEEEEeCCCCeEEEE
Confidence 99999999999988776433222211 11245799999999999999999999988765443
|
| >2dlh_A Receptor-type tyrosine-protein phosphatase delta; protein-tyrosine phosphatase delta, R-PTP-delta, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.22 E-value=1.8e-11 Score=99.99 Aligned_cols=98 Identities=27% Similarity=0.408 Sum_probs=79.8
Q ss_pred CcceeccCCCCCCC-CCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCC----CeEEeEEeecCCcEEEeCC
Q psy7039 2 DHSVLIKNPFDEPG-KPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTG----NWEKAVVVPAGETSCTVPG 76 (516)
Q Consensus 2 ~~~~~~~~~~~~p~-~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~----~~~~~~~~~~~~~~~~i~~ 76 (516)
|+.+.+++..+.|. +|.+|++..++.++|.|+|.+|. +.++.|.+|.|+|+..+. .|... .....+++.|.+
T Consensus 6 S~~~~~~T~~~~P~~~P~~l~~~~~~~~sv~l~W~~p~-~~~g~i~~Y~v~~~~~~~~~~~~~~~~--~~~~~~~~~i~~ 82 (121)
T 2dlh_A 6 SGPVLTQTSEQAPSSAPRDVQARMLSSTTILVQWKEPE-EPNGQIQGYRVYYTMDPTQHVNNWMKH--NVADSQITTIGN 82 (121)
T ss_dssp CSSSCSCCCCCCCCSCCEEEEECCCSSSBCCEEEECCS-CCCSCEEEEEEECCSCTTSCTTTSCCC--CCSSCSEECCBS
T ss_pred CCCEEEECCCcCCCCCCcccEEEecCCCEEEEEECCCC-CCCCcEeEEEEEEEeCCCCCccccEEE--ecCCceEEEecC
Confidence 66788889988875 99999999999999999999985 455679999999987543 23222 123678899999
Q ss_pred CcCCCeEEEEEEEecCCCCCCCCCCC
Q psy7039 77 LIEGETYQFQVRAVNAAGPGEASKPT 102 (516)
Q Consensus 77 l~~~~~y~~~~~a~n~~g~~~~s~~~ 102 (516)
|++++.|.|+|+|.|..|.+.++...
T Consensus 83 L~p~t~Y~~~V~A~n~~G~g~~S~~~ 108 (121)
T 2dlh_A 83 LVPQKTYSVKVLAFTSIGDGPLSSDI 108 (121)
T ss_dssp CCSSCEEEEEEEEEESSCBCCCCCCE
T ss_pred CCCCCEEEEEEEEEeCCccCCCCCCE
Confidence 99999999999999999998876543
|
| >1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.22 E-value=1.2e-10 Score=91.26 Aligned_cols=86 Identities=29% Similarity=0.470 Sum_probs=73.7
Q ss_pred cccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCC-ceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeE
Q psy7039 362 IRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDG-RIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSA 440 (516)
Q Consensus 362 ~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~-~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~ 440 (516)
+....+..|+.+.|.|.+.|.|.+.+.|++++..+.... ++.....+....|.|.++.. .|.|.|+|.|.|..|....
T Consensus 12 ~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~-~D~G~Y~C~a~N~~g~~~~ 90 (99)
T 1u2h_A 12 LMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCRLRILAAER-GDAGFYTCKAVNEYGARQC 90 (99)
T ss_dssp CCCEEEETTCCEEEEEEEEEESCCEEEEEETTEECCCBTTEEEEECGGGEEEEEESSCCG-GGCEEEEEEEEETTEEEEE
T ss_pred CCceEecCCCEEEEEEEEEEcCCCEEEEEECCEECCCCCCEEEEECCCCEEEEEEccCCc-CCCEEEEEEEEECCCceeE
Confidence 455688999999999999999999999999998886543 45555555666899999999 9999999999999999988
Q ss_pred EEEEEEec
Q psy7039 441 SCKVYVVD 448 (516)
Q Consensus 441 s~~l~v~~ 448 (516)
++.|.|.+
T Consensus 91 ~~~l~V~~ 98 (99)
T 1u2h_A 91 EARLEVRG 98 (99)
T ss_dssp EEEEEEEC
T ss_pred EEEEEEEC
Confidence 88888864
|
| >3qht_C Monobody YSMB-1; fibronectin type III, yeast small ubiquitin-like modifier, S NOVO protein; 2.40A {Artificial gene} | Back alignment and structure |
|---|
Probab=99.22 E-value=5.3e-11 Score=92.98 Aligned_cols=85 Identities=21% Similarity=0.275 Sum_probs=70.7
Q ss_pred CCCCCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCC-CeEEeEEeecCCcEEEeCCCcCCCeEEEEEEEe
Q psy7039 12 DEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTG-NWEKAVVVPAGETSCTVPGLIEGETYQFQVRAV 90 (516)
Q Consensus 12 ~~p~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~-~~~~~~~~~~~~~~~~i~~l~~~~~y~~~~~a~ 90 (516)
..|++|.+|++..++++++.|+|.+|. +.|.+|+|.|...++ .+..........++++|.+|++++.|.|+++|.
T Consensus 3 t~~~~P~~l~v~~~t~~Si~lsW~~p~----~~i~~Y~v~y~~~~~~~~~~~~~v~~~~t~~~l~~L~p~t~Y~v~V~A~ 78 (97)
T 3qht_C 3 SVSSVPTKLEVVAATPTSLLISWDASS----SSVSYYRITYGETGGNSPVQEFTVPGSSSTATISGLSPGVDYTITVYAY 78 (97)
T ss_dssp --CCSSSSCEEEEEETTEEEEECCCCC----SSCCEEEEEEEESSSCSCCEEEEEETTCCEEEECSCCTTCEEEEEEEEE
T ss_pred CCCCCCCceEEEecCCCEEEEEEeCCC----CCCCEEEEEEEECCCCCccEEEEeCCCcCEEEeCCCCCCCEEEEEEEEE
Confidence 368899999999999999999999973 468999999998665 334444566788999999999999999999999
Q ss_pred cCCCCCCCCC
Q psy7039 91 NAAGPGEASK 100 (516)
Q Consensus 91 n~~g~~~~s~ 100 (516)
+..|.+..+.
T Consensus 79 ~~~G~gp~ss 88 (97)
T 3qht_C 79 YSYYDLYYSY 88 (97)
T ss_dssp EEETTEEEEC
T ss_pred eCCccCCCCC
Confidence 9998875443
|
| >1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A | Back alignment and structure |
|---|
Probab=99.22 E-value=5.4e-11 Score=92.13 Aligned_cols=83 Identities=34% Similarity=0.569 Sum_probs=70.7
Q ss_pred cccEEEEcCCeEEEEEEEeeecCCceEEEECC--eecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCcee
Q psy7039 362 IRDMTVLAGEEFTITVPFSGRPKPTPIWTVNG--DEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDS 439 (516)
Q Consensus 362 ~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~--~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s 439 (516)
+..+.+..|+.+.|.|.+.|.|.|.+.|++++ ..+... ...........|.|.++.. .|+|.|+|.|.|..|..+
T Consensus 9 ~~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~~~~~~~~~~--~~~~~~~~~~~L~i~~~~~-~D~G~Y~C~a~N~~G~~~ 85 (93)
T 1wit_A 9 SRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPE--LLVDAKSSTTSIFFPSAKR-ADSGNYKLKVKNELGEDE 85 (93)
T ss_dssp CCEEEECTTBCCEEEEEEECCSSCEEEEECSTTTCBCSTT--SEEEEETTEEEEECTTBCG-GGCEEEEEEEEETTEEEE
T ss_pred CCceEEeCCCEEEEEEEEEEcCCCEEEEEECCCCcccCCc--EEEEecCCEEEEEECCCCh-hcCEEEEEEEEcCCCeEE
Confidence 45678999999999999999999999999999 777544 3333445668899999999 999999999999999988
Q ss_pred EEEEEEEe
Q psy7039 440 ASCKVYVV 447 (516)
Q Consensus 440 ~s~~l~v~ 447 (516)
.++.|.|+
T Consensus 86 ~~~~l~V~ 93 (93)
T 1wit_A 86 AIFEVIVQ 93 (93)
T ss_dssp EEEEEEEC
T ss_pred EEEEEEEC
Confidence 88888763
|
| >3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.22 E-value=2.2e-12 Score=118.65 Aligned_cols=163 Identities=12% Similarity=0.102 Sum_probs=84.8
Q ss_pred ccccCCceEEEEEEEEccCCCCCceecccccc-cc------------------eEEEEEecceeeEEEccCCCCCceEEE
Q psy7039 236 NNVHEGKAYEYRVSAVNAAGTEKPKISLDALI-GK------------------RIKEFVTSTTASLNIKNSVRKDSGIYK 296 (516)
Q Consensus 236 ~~l~~g~~~~~~~~~~~~~g~p~p~i~W~~~~-~~------------------~~~~~~~~~~~~l~i~~l~~~d~g~y~ 296 (516)
..+.+|+.+.+.|.+ .|.+.+.+.|.+.. +. ++..........|.|.+++.+|+|.|+
T Consensus 33 ~~v~~G~~v~L~C~~---~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~ 109 (233)
T 3bqu_C 33 LSMSIGEKVTIRCIT---STDIDDDMNWYQQKPGEPPRLLISDGNTLRPGVPSRFSSSGYGTDFVFTIENMLSEDVADYY 109 (233)
T ss_dssp C-------CCEEEEE---EEEESSCEEEEEECTTSCCEEEECTTSCBCTTSCTTCCCCEEEEEEEEC-----CCCCSEEE
T ss_pred EEEecCCCEEEEEec---CCcCCCeEEEEEECCCCCcEEEEEcCCccCCCCCccEEeeccCCEEEEEECCCCHHHCEEEE
Confidence 356789999999987 55566789995421 11 111111223448999999999999999
Q ss_pred EEEEecCCCc-ceeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEE
Q psy7039 297 IEAKNDYGID-MADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTI 375 (516)
Q Consensus 297 c~a~n~~g~~-~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l 375 (516)
|.+.|..+.. .....+.|...+.+|. +.+. ........|+.+.|
T Consensus 110 C~~~~~~~~~~~~~~~l~V~~~~~~p~--v~~~---------------------------------~~~~~~~~g~~v~L 154 (233)
T 3bqu_C 110 CLQSDNLPYTFGGGTNLEIKRADAAPT--VSIF---------------------------------PPSSEQLTSGGASV 154 (233)
T ss_dssp EEECSSSSCCBCCCCBC---CCCBCCE--EEEE---------------------------------CCCHHHHHTTEEEE
T ss_pred EEEecCCceeecCCEEEEEeCCCCCCE--EEEe---------------------------------CCCHHhhcCCceEE
Confidence 9999876532 2223455543222211 0000 00011236889999
Q ss_pred EEEEeeecCC--ceEEEECCeecCCCCceE--EEEcC-----CeEEEEEcCceecCCceEEEEEEEcCCCc
Q psy7039 376 TVPFSGRPKP--TPIWTVNGDEVSPDGRIK--FETSE-----NQTIYRNKSAKRATDSGSYTIQLVNTVGS 437 (516)
Q Consensus 376 ~C~~~g~p~~--~i~W~~~~~~l~~~~~~~--~~~~~-----~~~~l~i~~~~~~~~~g~y~c~a~n~~G~ 437 (516)
.|.+.|.+++ .+.|++++..+..+.... ..... ....|.|..+.. +|.|.|+|.|.|....
T Consensus 155 ~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~-~d~g~Y~C~a~n~~~~ 224 (233)
T 3bqu_C 155 VCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEY-ERHNSYTCEATHKTST 224 (233)
T ss_dssp EEEEEEEBSSCEEEEEEEC-----CCEEEEECCCCTTTCCEEEEEEEEEEHHHH-HTCCCEEEEEEEC---
T ss_pred EEEEccccCCceEEEEEECCeeCCCCceEecCCccCCCCCEEEEEEEEECHHHh-CCCCCEEEEEEeCCCC
Confidence 9999986544 799999997764330000 00011 124688988888 8999999999998654
|
| >1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A | Back alignment and structure |
|---|
Probab=99.21 E-value=2.5e-11 Score=96.60 Aligned_cols=90 Identities=31% Similarity=0.444 Sum_probs=78.1
Q ss_pred CCCccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEee
Q psy7039 112 LAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQT 191 (516)
Q Consensus 112 ~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~ 191 (516)
.+|.|. ..+..+.+.+|+.+.|.|.+. |.|.+.+.|++++..+....++.+..
T Consensus 13 ~~~~i~-~~p~~~~v~~G~~v~L~C~~~--------------------------g~p~p~v~W~k~g~~l~~~~~~~~~~ 65 (106)
T 1nct_A 13 LAARIL-TKPRSMTVYEGESARFSCDTD--------------------------GEPVPTVTWLRKGQVLSTSARHQVTT 65 (106)
T ss_dssp CCCEEE-ECCCCEEESSSSCEECCEEEE--------------------------CSSCCBCCBCSSSSCCTTCSSEEEEE
T ss_pred CCCEEE-ECCCCEEEeCCCcEEEEEEEE--------------------------EcCCCEEEEEECCEECCCCCCEEEEE
Confidence 456665 667789999999999999999 99999999999999988888888877
Q ss_pred cCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEEe
Q psy7039 192 TKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHV 228 (516)
Q Consensus 192 ~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~ 228 (516)
......|.|.+++.+|+|.|+|.+.|..|.......+
T Consensus 66 ~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l 102 (106)
T 1nct_A 66 TKYKSTFEISSVQASDEGNYSVVVENSEGKQEAEFTL 102 (106)
T ss_dssp CSSEEEEEECCCCSSCCSEEEECCBCSSCBCCEEEEE
T ss_pred CCCEEEEEECcCCchhCEEEEEEEEeCCCeEEEEEEE
Confidence 7778899999999999999999999998886655443
|
| >3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.21 E-value=3.9e-10 Score=105.17 Aligned_cols=124 Identities=11% Similarity=0.095 Sum_probs=86.8
Q ss_pred CCcEEEeCCCcCCCeEEEEEEEecCC----------CCCCCCCCCcceEeccCCC------------CCccccCcccceE
Q psy7039 68 GETSCTVPGLIEGETYQFQVRAVNAA----------GPGEASKPTAPIVAKPKNL------------APRIDRSTLNDVK 125 (516)
Q Consensus 68 ~~~~~~i~~l~~~~~y~~~~~a~n~~----------g~~~~s~~~~~~~~~~~~~------------~p~~~~~~~~~~~ 125 (516)
...+|+|.++++.|.|.|.|.|.|.. +..... ....+.+..... +|.+. ..+..+.
T Consensus 83 ~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~-~~~~l~V~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 160 (256)
T 3juy_B 83 NTAYMELRSLRSADTAVYYCARVGEWGWDDSPYDNYYMDVWG-KGTTVIVSSGGGGSGGGGSGGGGSEIVLT-QAPGTLS 160 (256)
T ss_dssp TEEEEEECSCCGGGCEEEEEEECCCCCTTCCTTTTCSCCEEC-CCEEEEECSCC----------CCCCCCEE-EECSEEE
T ss_pred CEEEEEECCCCcccCEEEEEeEEeccccccccccccceeEEC-CceEEeecCCcccccccccCCCcceeEEE-ecCCeEE
Confidence 45679999999999999999998861 111111 122233332211 34444 5677789
Q ss_pred EecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCc-eeeEEeeC--Ceeec------------cCCceEEe
Q psy7039 126 IKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPF-LNHGWSIN--GQVCQ------------IGGRADVQ 190 (516)
Q Consensus 126 v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~i~W~~~--~~~~~------------~~~~~~~~ 190 (516)
+.+|++++|.|.+. +.+. +.+.|++. +.... ...|+.+.
T Consensus 161 v~~G~~v~L~C~~~--------------------------~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 214 (256)
T 3juy_B 161 LSPGERATFSCRSS--------------------------HSIRSRRVAWYQHKPGQAPRLVIHGVSNRASGISDRFSGS 214 (256)
T ss_dssp ECTTSCEEEEEEES--------------------------SCCTTCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEE
T ss_pred EeCCCCEEEEEEEC--------------------------CCcCCeeEEEEEECCCCCcEEEEEecCccCCccCCcEEEE
Confidence 99999999999999 6665 78889872 22211 23566666
Q ss_pred ecCCeeEEEeccCCCCCCeeEEEEEEcCC
Q psy7039 191 TTKSETVLDIPFCSRSDTGHYSLTLENNL 219 (516)
Q Consensus 191 ~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~ 219 (516)
..+...+|.|.+++.+|+|.|.|.+.+..
T Consensus 215 ~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~ 243 (256)
T 3juy_B 215 GSGTDFTLTITRVEPEDFALYYCQVYGAS 243 (256)
T ss_dssp EETTEEEEEESSCCGGGCSEEEEEECCSS
T ss_pred ccCCEEEEEECCCCHhHCEEEEEEEeeCC
Confidence 66677889999999999999999998743
|
| >2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.21 E-value=2.2e-11 Score=97.64 Aligned_cols=91 Identities=29% Similarity=0.411 Sum_probs=78.5
Q ss_pred cccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEEEE-cCCeEEEEEcCceecCCceEEEEEEEcCCCceeE
Q psy7039 362 IRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFET-SENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSA 440 (516)
Q Consensus 362 ~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~-~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~ 440 (516)
+..+.+..|+.+.|.|.+.+.|.+.+.|++++..+.......... ..+...|.|.++.. .|.|.|+|.|.|..|..+.
T Consensus 16 ~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~-~D~G~Y~C~a~n~~g~~~~ 94 (110)
T 2dm3_A 16 PGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHSLIIEPVTS-RDAGIYTCIATNRAGQNSF 94 (110)
T ss_dssp CCEEEEESSSCBCCEEEEECSSCCEEECBBSSSBCCCCSSEEEEECTTSCEEEEESSCCG-GGCSBBCEEEECSSCEEEE
T ss_pred CCcEEEeCCCEEEEEEEEEEcCCCEEEEEECCEECCCCCceEEEEecCCeEEEEEeeCCc-ccCEEEEEEEECCCCEEEE
Confidence 456789999999999999999999999999998886655444333 33456899999999 9999999999999999999
Q ss_pred EEEEEEecCCCCC
Q psy7039 441 SCKVYVVDKPSPP 453 (516)
Q Consensus 441 s~~l~v~~~p~~P 453 (516)
++.|.|..+|.+|
T Consensus 95 ~~~l~V~~~p~~P 107 (110)
T 2dm3_A 95 SLELVVAAKESGP 107 (110)
T ss_dssp CCEEEEECCCCSS
T ss_pred EEEEEEeCCCCCC
Confidence 9999999988887
|
| >2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=2.3e-11 Score=110.27 Aligned_cols=119 Identities=19% Similarity=0.209 Sum_probs=88.5
Q ss_pred EeCCCcCCCeEEEEEEEecCCCCCCCCCCCcceEeccCCCCCccccCcccceEEecCCeEEEEEee-eeccccccCcccc
Q psy7039 73 TVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAPRIDRSTLNDVKIKAGQSFSFDVKE-FRELSYTKSPLRA 151 (516)
Q Consensus 73 ~i~~l~~~~~y~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~-~~~~~~~~~~~~~ 151 (516)
.|.+++..|.|.|+|.|.|..|........+.+.. .+|.+. ..+....+.+|+.+.|.|.+ .
T Consensus 72 ~i~~v~~~d~G~Y~C~~~n~~g~~~~~~~~l~v~~----~~~~~~-~~~~~~~~~~g~~v~l~C~~~~------------ 134 (217)
T 2vr9_A 72 TMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAV----LRDDFR-VEPKDTRVAKGETALLECGPPK------------ 134 (217)
T ss_dssp CCBSSSCBCCEEEEEEEEETTEEEECCCEEEEECE----ECCSCS-BCCCCEEECTTSCEEECCBCCC------------
T ss_pred EeccCCcccCceEEEEEecCCCccccccceEEEEE----eCCCcE-ECCCccEEcCCCeEEEEEECCC------------
Confidence 67889999999999999998775432222222222 233333 44556789999999999998 6
Q ss_pred ccccccCccceeecCcCceeeEEeeCCeeeccC--------CceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCceE
Q psy7039 152 LGVRANSTKGWVKLSEPFLNHGWSINGQVCQIG--------GRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTAT 223 (516)
Q Consensus 152 ~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~--------~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~ 223 (516)
+.|.+.+.|++++..+... .++.+. ....|.|.+++.+|+|.|+|.+.|..|...
T Consensus 135 --------------g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~---~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~ 197 (217)
T 2vr9_A 135 --------------GIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIV---DGGNLLISNVEPIDEGNYKCIAQNLVGTRE 197 (217)
T ss_dssp --------------EESCCEEEEEETTEEECCCCCC---CCCSEEEE---TTTEEEESSCCSTTCEEEEEEEEETTEEEE
T ss_pred --------------CCCCCeEEEEECCcCCCcccccccccCCcEEec---CCCcEEEeeCCHHHCeEEEEEEEcccceec
Confidence 8899999999999988732 233332 234799999999999999999999988765
Q ss_pred EE
Q psy7039 224 AS 225 (516)
Q Consensus 224 ~~ 225 (516)
..
T Consensus 198 ~~ 199 (217)
T 2vr9_A 198 SS 199 (217)
T ss_dssp CC
T ss_pred cc
Confidence 43
|
| >1dee_B IGM RF 2A2; FAB-IBP complex 2.7A resolution binding outside the antigen combining site superantigen FAB VH3 specificity; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1hez_B 1adq_H | Back alignment and structure |
|---|
Probab=99.21 E-value=1.5e-09 Score=98.87 Aligned_cols=169 Identities=14% Similarity=0.105 Sum_probs=102.5
Q ss_pred eccccCCceEEEEEEEEccCCCC--Cceecccccc-c-----------------------ceEEEEEe--cceeeEEEcc
Q psy7039 235 DNNVHEGKAYEYRVSAVNAAGTE--KPKISLDALI-G-----------------------KRIKEFVT--STTASLNIKN 286 (516)
Q Consensus 235 ~~~l~~g~~~~~~~~~~~~~g~p--~p~i~W~~~~-~-----------------------~~~~~~~~--~~~~~l~i~~ 286 (516)
...+.+|+.+.|.|.+ .+.+ .+.+.|.+.. + .++.+... .....|.|.+
T Consensus 9 ~~~v~~G~~v~L~C~~---~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~ 85 (223)
T 1dee_B 9 GGVVQPGKSLRLSCAA---SGFTFSGYGMHWVRQAPGKGLEWVALISYDESNKYYADSVKGRFTISRDNSKNTLYLQMNS 85 (223)
T ss_dssp CCEECTTCCEEEEEEE---ESSCGGGSCEEEEEECTTSCEEEEEEECTTSCCEEECTTTBTTEEEEEETTTTEEEEEECS
T ss_pred CEEEcCCCcEEEEEEe---cCcccCCceEEEEEECCCCCcEEEEEEecCCCccccCcccCCeEEEEecCCCCEEEEEECC
Confidence 3456789999999987 4433 4778896421 1 12222221 1356899999
Q ss_pred CCCCCceEEEEEEEecCCC------cceeEEEEEecCC-CCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccc
Q psy7039 287 SVRKDSGIYKIEAKNDYGI------DMADIEVVVVSKP-GPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSD 359 (516)
Q Consensus 287 l~~~d~g~y~c~a~n~~g~------~~~~~~l~v~~~p-~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~ 359 (516)
++.+|+|.|.|.+.+..|. ......|.|...+ .+|. +...
T Consensus 86 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~--i~~~------------------------------- 132 (223)
T 1dee_B 86 LRAEDTAVYYCAKVKFYDPTAPNDYWGQGTLVTVSSGSASAPT--LFPL------------------------------- 132 (223)
T ss_dssp CCGGGCEEEEEEEESSSSTTCCEEEECCCEEEEECSSCCBCCE--EEEE-------------------------------
T ss_pred CCHHHCEEEEEEEeccccCcccceeecCcEEEEEccCCCCCCE--EEEe-------------------------------
Confidence 9999999999999987531 1123466666422 1110 0000
Q ss_pred cccccEEEEcCCeEEEEEEEeee-cCC-ceEEEE-CCeecCCCCceE-EEEcCC---eEEEEEcCcee-cCCceEEEEEE
Q psy7039 360 LSIRDMTVLAGEEFTITVPFSGR-PKP-TPIWTV-NGDEVSPDGRIK-FETSEN---QTIYRNKSAKR-ATDSGSYTIQL 431 (516)
Q Consensus 360 ~~~~~~~v~~g~~~~l~C~~~g~-p~~-~i~W~~-~~~~l~~~~~~~-~~~~~~---~~~l~i~~~~~-~~~~g~y~c~a 431 (516)
.....+..|+.+.|.|.+.+. |.+ .+.|++ ++..+.....+. ....+. .+.|.|..... .+|.|.|+|.|
T Consensus 133 --~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~g~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~d~g~y~C~v 210 (223)
T 1dee_B 133 --VSCENSNPSSTVAVGCLAQDFLPDSITFSWKYKNNSDISSTRGFPSVLRGGKYAATSQVLLPSKDVAQGTNEHVVCKV 210 (223)
T ss_dssp --ECTTCCCSSSEEEEEEEEEEEBSSCCEEEEEETTSCBCSCEEECCCEEETTEEEEEEEEEEECTTTTSTTCCEEEEEE
T ss_pred --cCCcccCCCCcEEEEEEEEEEeCCCeEEEeEccCCCccceeEECCccccCCeEEEEEEEEEcHHHhccCCCCEEEEEE
Confidence 000123578999999999987 766 999999 887764300000 000111 23577755431 03579999999
Q ss_pred EcCCCceeEE
Q psy7039 432 VNTVGSDSAS 441 (516)
Q Consensus 432 ~n~~G~~s~s 441 (516)
.|..|.....
T Consensus 211 ~n~~~~~~~~ 220 (223)
T 1dee_B 211 QHPNGNKEKD 220 (223)
T ss_dssp ECTTCCEEEE
T ss_pred EeCCCCCccc
Confidence 9999876543
|
| >2gys_A Cytokine receptor common beta chain; dimer of interlocking chains of fibronectin-III domains, FOU fibronectin-III domains PER chain; HET: NAG FUC BMA NDG; 2.70A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1gh7_A* 3cxe_A* 1egj_A* 1c8p_A | Back alignment and structure |
|---|
Probab=99.21 E-value=2.9e-09 Score=106.89 Aligned_cols=98 Identities=23% Similarity=0.347 Sum_probs=71.3
Q ss_pred CCCCCCcceEEEeeeCCeeEEEecCCCCCCC-----CceeceEEEEEeCCCCeEEeEEeecCCcEEEeC--CCcCCCeEE
Q psy7039 12 DEPGKPTDLEATDWDKDHVDLQWTPPISDGG-----SPITGYVVEMKDKTGNWEKAVVVPAGETSCTVP--GLIEGETYQ 84 (516)
Q Consensus 12 ~~p~~p~~l~~~~~~~~~v~l~W~~p~~~~~-----~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~i~--~l~~~~~y~ 84 (516)
..|+||.+|++.... +.+.|+|.+|..... ...+.|.|+|+..+..|............+.+. +|.++..|.
T Consensus 107 v~p~pP~~l~v~~~~-~~~~l~W~~p~~~~~~~~~~~~~l~Y~v~yr~~~~~w~~~~~~~~~~~~~~~~~~~L~p~~~Y~ 185 (419)
T 2gys_A 107 VQPPEPRDLQISTDQ-DHFLLTWSVALGSPQSHWLSPGDLEFEVVYKRLQDSWEDAAILLSNTSQATLGPEHLMPSSTYV 185 (419)
T ss_dssp BCCCCCEEEEEEEET-TEEEEEEECCC-----CCSCGGGEEEEEEEEETTSCSTTCEEEEESSSEEEECTTTCCTTCEEE
T ss_pred ccCCCCCceEEEecC-CeEEEEECCCccccccchhccCceEEEEEEccCCCChhheeeecccceEEEechhhcCCCCeEE
Confidence 479999999998665 799999999854321 246899999998766776554433345555665 999999999
Q ss_pred EEEEEecCC---CCCCCCCCCcceEeccC
Q psy7039 85 FQVRAVNAA---GPGEASKPTAPIVAKPK 110 (516)
Q Consensus 85 ~~~~a~n~~---g~~~~s~~~~~~~~~~~ 110 (516)
++|+|.+.. +.+.+|..+..+.....
T Consensus 186 ~rVra~~~~g~~~~G~wS~WS~~~~~~t~ 214 (419)
T 2gys_A 186 ARVRTRLAPGSRLSGRPSKWSPEVCWDSQ 214 (419)
T ss_dssp EEEEEEECTTSSCCBCCCCCCCCEEEECC
T ss_pred EEEEEecCCCCCCCcccCCCCCceeeecc
Confidence 999999964 34677776666665443
|
| >1x4y_A Biregional cell adhesion molecule-related/DOWN- regulated oncogenes (CDON)binding...; fibronectin type III, FN3; NMR {Mus musculus} SCOP: b.1.2.1 | Back alignment and structure |
|---|
Probab=99.21 E-value=1.2e-10 Score=93.96 Aligned_cols=92 Identities=16% Similarity=0.222 Sum_probs=73.7
Q ss_pred CCCCCCCcceEEEeeeCCeeEEEecCCC-CCCCCceeceEEEEEeCCCC---eEEeEEeecCCcEEEeCCCcCCCeEEEE
Q psy7039 11 FDEPGKPTDLEATDWDKDHVDLQWTPPI-SDGGSPITGYVVEMKDKTGN---WEKAVVVPAGETSCTVPGLIEGETYQFQ 86 (516)
Q Consensus 11 ~~~p~~p~~l~~~~~~~~~v~l~W~~p~-~~~~~~i~~Y~v~~~~~~~~---~~~~~~~~~~~~~~~i~~l~~~~~y~~~ 86 (516)
..+|++|.++++..+++++|.|+|.+|. ...++.|.+|.|+|+..+.. +..........++++|.+|++++.|.|+
T Consensus 6 ~~P~~~P~~~~~~~~~~~si~l~W~~p~~~~~~g~i~gY~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~ 85 (114)
T 1x4y_A 6 SGPVAGPYITFTDAVNETTIMLKWMYIPASNNNTPIHGFYIYYRPTDSDNDSDYKKDMVEGDRYWHSISHLQPETSYDIK 85 (114)
T ss_dssp CSCCSCCEEEEEECSSSSCEEEEEECCCTTSCCCCCCEEEEEECCTTSCSGGGCCCEEEETTCCEEEECSCCTTCEEEEE
T ss_pred cCCCCCCeEEEEEecCCCEEEEEEeCCCchhcCCccceEEEEEEECCCCCCcceeeEecCCcEeEEEcCCCCCCCEEEEE
Confidence 4567899999999999999999999985 24567899999999875442 2222234456788999999999999999
Q ss_pred EEEecCCCCCCCCCCC
Q psy7039 87 VRAVNAAGPGEASKPT 102 (516)
Q Consensus 87 ~~a~n~~g~~~~s~~~ 102 (516)
|+|.|..|.+..+...
T Consensus 86 V~A~n~~G~g~~S~~v 101 (114)
T 1x4y_A 86 MQCFNEGGESEFSNVM 101 (114)
T ss_dssp EEEECTTCCCCCCCCE
T ss_pred EEEEcCCccCCCcCCE
Confidence 9999999998876543
|
| >3b83_A Ten-D3; beta sheet, computational redesigned protein, alternative splicing, cell adhesion, coiled coil, EGF-like domain, extracellular matrix; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.20 E-value=5.1e-11 Score=93.68 Aligned_cols=82 Identities=24% Similarity=0.355 Sum_probs=68.7
Q ss_pred CCCCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCC--CeEEeEEeecCCcEEEeCCCcCCCeEEEEEEEe
Q psy7039 13 EPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTG--NWEKAVVVPAGETSCTVPGLIEGETYQFQVRAV 90 (516)
Q Consensus 13 ~p~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~--~~~~~~~~~~~~~~~~i~~l~~~~~y~~~~~a~ 90 (516)
+|++|.+|++..+++++|.|+|.+|. ..|.+|.|+|+..+. .+. ........++++|.+|++++.|.|+|+|.
T Consensus 1 ~p~~P~~l~~~~~~~~sv~lsW~pP~----~~i~~Y~v~y~~~~~~~~~~-~~~~~~~~t~~~i~~L~p~t~Y~~~V~A~ 75 (100)
T 3b83_A 1 MLQPPFNIKVTNITLTTAVVTWQPPI----LPIEGILVTFGRKNDPSDET-TVDLTSSITSLTLTNLEPNTTYEIRIVAR 75 (100)
T ss_dssp CCCCCEEEEEESCCSSCEEEEEECCS----SCCSEEEEEEEESSCTTTCE-EEEECTTEEEEEECSCCTTCEEEEEEEEE
T ss_pred CCccCCccEEEEecCCEEEEEEcCCc----ccCCEEEEEEEECCCCCCce-EEEECCcceEEEECCCCCCCEEEEEEEEE
Confidence 58999999999999999999999984 269999999987553 333 23455678999999999999999999999
Q ss_pred cCCCCCCCC
Q psy7039 91 NAAGPGEAS 99 (516)
Q Consensus 91 n~~g~~~~s 99 (516)
|..|.+.++
T Consensus 76 n~~g~s~p~ 84 (100)
T 3b83_A 76 NGQQYSPPV 84 (100)
T ss_dssp ETTEECCCE
T ss_pred eCCCCCCCE
Confidence 998877654
|
| >3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.20 E-value=5.8e-12 Score=115.76 Aligned_cols=158 Identities=9% Similarity=0.081 Sum_probs=86.0
Q ss_pred CcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCC--eee------------ccC
Q psy7039 119 STLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSING--QVC------------QIG 184 (516)
Q Consensus 119 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~--~~~------------~~~ 184 (516)
..+..+.+.+|+++.|.|.+. +.+.+.+.|++++ ... ...
T Consensus 28 ~~p~~~~v~~G~~v~L~C~~~--------------------------~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~ 81 (233)
T 3bqu_C 28 QSPASLSMSIGEKVTIRCITS--------------------------TDIDDDMNWYQQKPGEPPRLLISDGNTLRPGVP 81 (233)
T ss_dssp EECSBC-------CCEEEEEE--------------------------EEESSCEEEEEECTTSCCEEEECTTSCBCTTSC
T ss_pred EcCCeEEEecCCCEEEEEecC--------------------------CcCCCeEEEEEECCCCCcEEEEEcCCccCCCCC
Confidence 345667889999999999998 6666778998743 111 012
Q ss_pred CceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCceEE---EEEeec----eeeee----ccccCCceEEEEEEEEcc
Q psy7039 185 GRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATA---SAHVTG----TEFTD----NNVHEGKAYEYRVSAVNA 253 (516)
Q Consensus 185 ~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~---~~~~~~----~~~~~----~~l~~g~~~~~~~~~~~~ 253 (516)
.|+.+...+...+|.|.+++.+|+|.|.|.+.+..+.... .+.+.. ..+.. ....+|..+.+.|.+
T Consensus 82 ~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~g~~v~L~C~~--- 158 (233)
T 3bqu_C 82 SRFSSSGYGTDFVFTIENMLSEDVADYYCLQSDNLPYTFGGGTNLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFL--- 158 (233)
T ss_dssp TTCCCCEEEEEEEEC-----CCCCSEEEEEECSSSSCCBCCCCBC---CCCBCCEEEEECCCHHHHHTTEEEEEEEE---
T ss_pred ccEEeeccCCEEEEEECCCCHHHCEEEEEEEecCCceeecCCEEEEEeCCCCCCEEEEeCCCHHhhcCCceEEEEEE---
Confidence 3444333344558999999999999999999886543211 111111 11111 112358899999998
Q ss_pred CC-CCCc-eecccccccc---e-EEEE-E--ec-----ceeeEEEccCCCCCceEEEEEEEecCCC
Q psy7039 254 AG-TEKP-KISLDALIGK---R-IKEF-V--TS-----TTASLNIKNSVRKDSGIYKIEAKNDYGI 305 (516)
Q Consensus 254 ~g-~p~p-~i~W~~~~~~---~-~~~~-~--~~-----~~~~l~i~~l~~~d~g~y~c~a~n~~g~ 305 (516)
.| .|++ .+.|.+.... . .... . .. ....|.|.....+|.|.|+|.|.|....
T Consensus 159 ~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~ 224 (233)
T 3bqu_C 159 NNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTST 224 (233)
T ss_dssp EEEBSSCEEEEEEEC-----CCEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCCEEEEEEEC---
T ss_pred ccccCCceEEEEEECCeeCCCCceEecCCccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCCC
Confidence 44 3443 7999662211 1 1100 0 01 1246888888889999999999997544
|
| >2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.20 E-value=1.7e-10 Score=90.00 Aligned_cols=84 Identities=12% Similarity=0.167 Sum_probs=73.6
Q ss_pred CcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCc-CceeeEEeeCCeeeccCCceEEeecCCeeE
Q psy7039 119 STLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSE-PFLNHGWSINGQVCQIGGRADVQTTKSETV 197 (516)
Q Consensus 119 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~ 197 (516)
.++..+.+.+|+.+.|.|.+. +. |.+.+.|++++..+....++.+...+....
T Consensus 6 ~~~~~~~v~~G~~v~l~C~~~--------------------------g~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~ 59 (97)
T 2bk8_A 6 GQIMHAVGEEGGHVKYVCKIE--------------------------NYDQSTQVTWYFGVRQLENSEKYEITYEDGVAI 59 (97)
T ss_dssp CCCCCEEECTTCCEEEEEEEE--------------------------SCCTTCEEEEEETTEECCSSSSEEEEEETTEEE
T ss_pred ccCcCEEEcCCCcEEEEEEEe--------------------------ccCCCCEEEEEECCEECcCCCCEEEEEcCCeEE
Confidence 455678899999999999999 86 899999999999998888888776777789
Q ss_pred EEeccCCCCCCeeEEEEEEcCCCceEEEEEe
Q psy7039 198 LDIPFCSRSDTGHYSLTLENNLGTATASAHV 228 (516)
Q Consensus 198 l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~ 228 (516)
|.|.+++.+|+|.|+|.+.|..|.......+
T Consensus 60 L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l 90 (97)
T 2bk8_A 60 LYVKDITKLDDGTYRCKVVNDYGEDSSYAEL 90 (97)
T ss_dssp EEECSCCGGGCEEEEEEEECSSCEEEEEEEE
T ss_pred EEEecCChhhCeEEEEEEECCCCeEeEEEEE
Confidence 9999999999999999999999987765544
|
| >1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X | Back alignment and structure |
|---|
Probab=99.20 E-value=6.8e-11 Score=96.06 Aligned_cols=84 Identities=25% Similarity=0.368 Sum_probs=71.0
Q ss_pred cCCeEEEEEEEeeecCCceEEEECCeecCCCCceEEEEcC-------CeEEEEEcCceecCCceEEEEEEEcCCCceeEE
Q psy7039 369 AGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSE-------NQTIYRNKSAKRATDSGSYTIQLVNTVGSDSAS 441 (516)
Q Consensus 369 ~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~-------~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s 441 (516)
.+..+.|.|.+.|.|.|.|.|+++|..+..+.++...... ....|.|.++.. .|+|.|+|.|.|..|....+
T Consensus 14 ~~~~~~l~c~v~G~P~P~I~W~knG~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~-~D~G~YtC~A~N~~G~~~~t 92 (126)
T 1he7_A 14 EMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTH-VNNGNYTLLAANPFGQASAS 92 (126)
T ss_dssp CCCEEEEEEEECCSSCCEEEEEETTEECCCCSSEEEEEECCCSSCCCEEEEEEEESCCG-GGCEEEEEEEEETTEEEEEE
T ss_pred cCccEEEEEEEeeeCCCeEEEEECCEECCCCCceeEEEeeccccccccceEEEECcCCC-CCCEEEEEEEEECCCeEEEE
Confidence 5678889999999999999999999999877665443221 246799999999 99999999999999999999
Q ss_pred EEEEEecCCCCC
Q psy7039 442 CKVYVVDKPSPP 453 (516)
Q Consensus 442 ~~l~v~~~p~~P 453 (516)
+.|.|...|...
T Consensus 93 ~~l~v~~~P~~~ 104 (126)
T 1he7_A 93 IMAAFMDNPFEF 104 (126)
T ss_dssp EEECCCSCTTSC
T ss_pred EEEEEEcCCCCC
Confidence 999998777653
|
| >2fbj_H IGA-kappa J539 FAB (heavy chain); immunoglobulin; HET: NAG FUC; 1.95A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mcp_H 2mcp_H* | Back alignment and structure |
|---|
Probab=99.20 E-value=4.2e-10 Score=102.35 Aligned_cols=158 Identities=9% Similarity=-0.000 Sum_probs=101.6
Q ss_pred ccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcC--ceeeEEeeCC--ee---e------------
Q psy7039 121 LNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEP--FLNHGWSING--QV---C------------ 181 (516)
Q Consensus 121 ~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p--~~~i~W~~~~--~~---~------------ 181 (516)
+..+.+.+|+.+.|.|.+. +.+ .+.+.|++.. .. +
T Consensus 7 ~~~~~v~~G~~v~L~C~~~--------------------------~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~ 60 (220)
T 2fbj_H 7 SGGGLVQPGGSLKLSCAAS--------------------------GFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINY 60 (220)
T ss_dssp ECCEEECTTCCEEEEEEEE--------------------------SSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEE
T ss_pred CCCeEecCCCcEEEEEEec--------------------------CccCCCceEEEEEECCCCCeEEEEEEccCCCceec
Confidence 4458899999999999998 443 4567776632 11 1
Q ss_pred --ccCCceEEeec--CCeeEEEeccCCCCCCeeEEEEEEcCCCce-----EEEEEeec-----eeee---eccccCCceE
Q psy7039 182 --QIGGRADVQTT--KSETVLDIPFCSRSDTGHYSLTLENNLGTA-----TASAHVTG-----TEFT---DNNVHEGKAY 244 (516)
Q Consensus 182 --~~~~~~~~~~~--~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~-----~~~~~~~~-----~~~~---~~~l~~g~~~ 244 (516)
....|+.+... ....+|.|.+++.+|+|.|.|.+.+..+.. ...+.+.. ..+. ...+..|..+
T Consensus 61 ~~~~~~R~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~~~~~~~g~~v 140 (220)
T 2fbj_H 61 TPSLKDKFIISRDNAKNSLYLQMSKVRSEDTALYYCARLHYYGYNAYWGQGTLVTVSAESARNPTIYPLTLPPALSSDPV 140 (220)
T ss_dssp CTTTTTTEEEEECSSSCEEEEEECSCCGGGCEEEEEEEEETTTEEEEECCCEEEEECSSCCBCCEEEEECCCSSSCCSSE
T ss_pred CCccCCcEEEEeeCCCCEEEEEECCCChhhCEEEEEEEeccccccceecCCEEEEecCCCCCCCEEEEeecccccCCCcE
Confidence 01256666543 346799999999999999999998864321 11222221 0111 1235678999
Q ss_pred EEEEEEEccCCC-CC--ceecccccccceEEEE----Eec-c----eeeEEEccCCCCCceEEEEEEEecCCCcc
Q psy7039 245 EYRVSAVNAAGT-EK--PKISLDALIGKRIKEF----VTS-T----TASLNIKNSVRKDSGIYKIEAKNDYGIDM 307 (516)
Q Consensus 245 ~~~~~~~~~~g~-p~--p~i~W~~~~~~~~~~~----~~~-~----~~~l~i~~l~~~d~g~y~c~a~n~~g~~~ 307 (516)
.+.|.+. |. |. +.+.|.+......... ... . ...|.|......|.|.|+|.|.|..+...
T Consensus 141 ~L~C~~~---g~~P~~~~~v~W~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~ytC~v~n~~~~~~ 212 (220)
T 2fbj_H 141 IIGCLIH---DYFPSGTMNVTWGKSGKDITTVNFPPALASGGRYTMSNQLTLPAVECPEGESVKCSVQHDSNPVQ 212 (220)
T ss_dssp EEEEEEE---EEBSCCCEEEEESCCCSSCEEEECCCEECSSSCEEEEEEEEECGGGSCTTCEEEEEEEETTSCCE
T ss_pred EEEEEEE---eEECCCcEEEEEecCCEecceEecCceECCCCCEEEEEEEEECHHHcCCCCeEEEEEEcCCCceE
Confidence 9999984 43 55 7899976322110000 001 1 12588888888899999999999987754
|
| >2cum_A Tenascin-X; hexabrachion-like, fibronectin type III domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 | Back alignment and structure |
|---|
Probab=99.20 E-value=1.1e-10 Score=92.64 Aligned_cols=84 Identities=24% Similarity=0.364 Sum_probs=71.7
Q ss_pred CCCCCCCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCCCeEEeEEeecCCcEEEeCCCcCCCeEEEEEEE
Q psy7039 10 PFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVVVPAGETSCTVPGLIEGETYQFQVRA 89 (516)
Q Consensus 10 ~~~~p~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~~~a 89 (516)
....|++|.+|++..++++++.|+|.+|. +.+.+|+|+|+..++.|..+ ......++++|.+|++++.|.|+++|
T Consensus 4 ~~t~p~~P~~l~v~~~~~~sv~lsW~~p~----~~i~~Y~i~y~~~~~~~~~~-~~~~~~ts~~l~~L~p~t~Y~~~V~A 78 (105)
T 2cum_A 4 GSSGLEAPRDLEAKEVTPRTALLTWTEPP----VRPAGYLLSFHTPGGQTQEI-LLPGGITSHQLLGLFPSTSYNARLQA 78 (105)
T ss_dssp CCTTCCCCEEEEEESCCSSCEEEEEECCS----SCCSEEEEEEECTTSCEEEE-EECSSCSEEEECSCCTTCEEEEEEEE
T ss_pred cccCCCCCCceEEEeccCCEEEEEEcCCC----CccceEEEEEEeCCCceEEE-EECCCccEEEECCCCCCCEEEEEEEE
Confidence 45679999999999999999999999974 36899999999876666544 45567899999999999999999999
Q ss_pred ecCCCCCCC
Q psy7039 90 VNAAGPGEA 98 (516)
Q Consensus 90 ~n~~g~~~~ 98 (516)
.|..|.+.+
T Consensus 79 ~~~~g~s~~ 87 (105)
T 2cum_A 79 MWGQSLLPP 87 (105)
T ss_dssp EBTTBCCCC
T ss_pred EeCCcccCC
Confidence 998877664
|
| >3bae_H WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} SCOP: b.1.1.2 PDB: 3bkc_H 3bkj_H 3bkm_H 3mck_H 2r0w_H* 2iqa_H 2iq9_H 1ggi_H 1ggb_H 1ggc_H 3eys_H* 2ipt_H 2ipu_H 3eyu_H* 2r0z_H* 3rkd_H 1r0a_H* 1n5y_H* 1n6q_H* 1t03_H* ... | Back alignment and structure |
|---|
Probab=99.20 E-value=1.9e-10 Score=105.35 Aligned_cols=157 Identities=11% Similarity=0.141 Sum_probs=99.5
Q ss_pred ccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCc----eeeEEeeC--Ceeec------------
Q psy7039 121 LNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPF----LNHGWSIN--GQVCQ------------ 182 (516)
Q Consensus 121 ~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~----~~i~W~~~--~~~~~------------ 182 (516)
+..+.+.+|+.+.|.|.+. +.+. +.+.|++. +..+.
T Consensus 7 p~~~~v~~G~~v~L~C~~~--------------------------~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~ 60 (228)
T 3bae_H 7 SGPGLLKPSQTLSLTCSFS--------------------------GFSIRTSKVGVSWIRQPSGKGLEWLAHIYWDDDKR 60 (228)
T ss_dssp ECCSEECTTCCEEEEEEEE--------------------------SSCHHHHCCEEEEEEEETTCCCEEEEEECTTSCEE
T ss_pred CCceeecCCCeEEEEEEEe--------------------------CcccCCCceeEEEEEECCCCCeEEEEEEecCCcee
Confidence 4557889999999999998 6553 67788763 21110
Q ss_pred ----cCCceEEeec--CCeeEEEeccCCCCCCeeEEEEEEcCCC------c-----eEEEEEeec-----eee-e---ec
Q psy7039 183 ----IGGRADVQTT--KSETVLDIPFCSRSDTGHYSLTLENNLG------T-----ATASAHVTG-----TEF-T---DN 236 (516)
Q Consensus 183 ----~~~~~~~~~~--~~~~~l~i~~~~~~d~g~Y~c~~~~~~g------~-----~~~~~~~~~-----~~~-~---~~ 236 (516)
...|+.+... ....+|.|.+++.+|+|.|.|.+.+..| . ....+.+.. ... . ..
T Consensus 61 ~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~g~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~ 140 (228)
T 3bae_H 61 YNPSLESRLTISKDTSRDMVFMKITSVDTADTATYYCARRGFYGRKYEVNHFDYWGQGTTLTVSSAKTTAPSVYPLAPVC 140 (228)
T ss_dssp ECTTTGGGEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEEESTTCTTSEEEEEECCCEEEEECSCCCBCCEEEEECC--
T ss_pred eCcccCCcEEEEEcCCCCeEEEEEcCCCcccCEEEEEEEecCCCccccccceeeeCCcEEEEecCCCCCCCEEEEecccc
Confidence 1245655432 3457999999999999999999998654 1 112222221 011 1 12
Q ss_pred cccCCceEEEEEEEEccCCC-CCc-eecccccccc---e-EEEEEec----ceeeEEEccCCCCCceEEEEEEEecCCCc
Q psy7039 237 NVHEGKAYEYRVSAVNAAGT-EKP-KISLDALIGK---R-IKEFVTS----TTASLNIKNSVRKDSGIYKIEAKNDYGID 306 (516)
Q Consensus 237 ~l~~g~~~~~~~~~~~~~g~-p~p-~i~W~~~~~~---~-~~~~~~~----~~~~l~i~~l~~~d~g~y~c~a~n~~g~~ 306 (516)
.+.+|..+.+.|.+ .|. |.| .+.|.+.... . ....... ....|.|.....++ |.|+|.|.|..+..
T Consensus 141 ~~~~g~~~~l~C~~---~g~~P~p~~v~W~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~d~-g~YtC~~~n~~~~~ 216 (228)
T 3bae_H 141 GDTTGSSVTLGCLV---KGYFPEPVTLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-ESITCNVAHPASST 216 (228)
T ss_dssp ---CCSEEEEEEEE---EEEBSSCCEEEEGGGTCCTTEEEEEEEEETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGTE
T ss_pred cccCCCCEEEEEEE---ccEeCCCEEEEEeeCCcccCceEcCceeCCCcEEEEEEEEEEhhhcCC-CcEEEEEEECCCCC
Confidence 34578999999998 454 767 9999763221 1 1100011 23468888887755 99999999988765
Q ss_pred c
Q psy7039 307 M 307 (516)
Q Consensus 307 ~ 307 (516)
.
T Consensus 217 ~ 217 (228)
T 3bae_H 217 K 217 (228)
T ss_dssp E
T ss_pred C
Confidence 4
|
| >3l5i_A Interleukin-6 receptor subunit beta; cytokine receptor, fibronectin type III domain, alternative cell membrane, disulfide bond; 1.90A {Homo sapiens} PDB: 3l5j_A | Back alignment and structure |
|---|
Probab=99.20 E-value=3.3e-10 Score=107.68 Aligned_cols=172 Identities=15% Similarity=0.155 Sum_probs=109.3
Q ss_pred EccCCCCCceEEEEEEEecCCCcceeEEEEEecC---CCCCCCCceeeeccCCeeEEEecCCCCCCCCceeecccccccc
Q psy7039 284 IKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSK---PGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDL 360 (516)
Q Consensus 284 i~~l~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~---p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~ 360 (516)
+..+.+...|.+++.|.|..|....+ .+.+... +..|...+.+.... +++.|+|.+|.. .+.+|.
T Consensus 65 ~~~l~p~t~Y~~~V~A~n~~G~s~~s-~~~~~~~~~~~~~p~~~~~~~~~~-~si~l~W~~p~~----~i~~Y~------ 132 (290)
T 3l5i_A 65 LTVNLTNDRYLATLTVRNLVGKSDAA-VLTIPACDFQATHPVMDLKAFPKD-NMLWVEWTTPRE----SVKKYI------ 132 (290)
T ss_dssp EEEEECSSCEEEEEEEEESSCBCCCE-EEEECCTTCCCCCCCEEEEEEEET-TEEEEEEECCSS----CCCEEE------
T ss_pred EEEEcCCceEEEEEEEEcCCCCCCCc-eEEeecccccCCCccceeEEEeCC-CeEEEEEeCCCC----CCCcEE------
Confidence 34456778999999999998876544 3333333 12221224444444 799999998864 565652
Q ss_pred ccccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeE
Q psy7039 361 SIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSA 440 (516)
Q Consensus 361 ~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~ 440 (516)
+.|...+........+..........+.+.+|.+ ...|.|++.|.|..|.+..
T Consensus 133 --------------------------v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p-~t~Y~~~V~A~n~~g~g~~ 185 (290)
T 3l5i_A 133 --------------------------LEWCVLSDKAPCITDWQQEDGTVHRTYLRGNLAE-SKCYLITVTPVYADGPGSP 185 (290)
T ss_dssp --------------------------EEEEEECSSSCCCCEEEEEETTCSEEECCSCCCT-TCEEEEEEEEEETTEECCC
T ss_pred --------------------------EEEEECCCCCCCCcCeEEccCCCcceEEecCcCC-ccEEEEEEEEEeCCccccc
Confidence 2333222111001112222333445788899999 9999999999999987653
Q ss_pred EEEEEEecC---CCCCCCCcccccccCCeEEEEeeCC-CCCCCCCcceEEEEEEecCCCc
Q psy7039 441 SCKVYVVDK---PSPPQGPLDVSDITPESCSLSWKPP-LDDGGSPITNYVVEKYESATGV 496 (516)
Q Consensus 441 s~~l~v~~~---p~~P~~~l~~~~~~~~~~~l~W~~p-~~~~~~~i~~Y~v~~~~~~~~~ 496 (516)
..+.+... |..| ..+.+..++.+++.|+|+++ ..+.++.|.+|.|+|+..+...
T Consensus 186 -~~~~~~t~~~~P~~~-p~~~~~~~~~~sv~l~W~~~~~~~~~g~i~~Y~v~~~~~~~~~ 243 (290)
T 3l5i_A 186 -ESIKAYLKQAPPSKG-PTVRTKKVGKNEAVLEWDQLPVDVQNGFIRNYTIFYRTIIGNE 243 (290)
T ss_dssp -EEEEEESSCCCCSSC-CCEEEEEECSSCEEEEECCCCHHHHSSCCCEEEEEEEETTSCC
T ss_pred -EEEEeEccccCCCCC-CeeeEeeccCCEEEEEEcCCChhccCCEEEEEEEEEEeCCCCe
Confidence 33344333 3333 36677778899999999953 2345778999999999876554
|
| >3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.19 E-value=6.5e-11 Score=111.45 Aligned_cols=186 Identities=13% Similarity=0.082 Sum_probs=96.4
Q ss_pred cCCCeEEEEEEEecCCCCCCCCCCCcceEeccCCCCCccccCcccceEEecCCeEEEEEeeeeccccccCcccccccccc
Q psy7039 78 IEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRAN 157 (516)
Q Consensus 78 ~~~~~y~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~ 157 (516)
+..+...|.|+|.|..|....+. ...+. ..+..+.+.+|+++.|.|.+.
T Consensus 4 ~~~~~~~y~~~~~~~~g~~~~~~------------~~~v~-~~p~~v~v~~G~~v~L~C~~~------------------ 52 (270)
T 3qib_D 4 ERADLIAYLKQATKGGGGSGGGG------------GMKVI-QTPRYLVKGQGQKAKMRCIPE------------------ 52 (270)
T ss_dssp ------------------------------------CCCE-EECSEEEEETTSCEEEEEECC------------------
T ss_pred hhhhHHHHHHHHhccCCcccccc------------ceeEE-eCCCeEEEcCCCCEEEEEEec------------------
Confidence 46678899999988766432211 12222 445668899999999999987
Q ss_pred CccceeecCcCceeeEEee--------------CCeeeccC---C-ceEEee-cCCeeEEEeccCCCCCCeeEEEEEEcC
Q psy7039 158 STKGWVKLSEPFLNHGWSI--------------NGQVCQIG---G-RADVQT-TKSETVLDIPFCSRSDTGHYSLTLENN 218 (516)
Q Consensus 158 ~~~~~~~~~~p~~~i~W~~--------------~~~~~~~~---~-~~~~~~-~~~~~~l~i~~~~~~d~g~Y~c~~~~~ 218 (516)
+ +.+.+.|++ ++...... . |+.+.. .....+|.|.+++.+|+|.|.|.+.+.
T Consensus 53 --------~-~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~ 123 (270)
T 3qib_D 53 --------K-GHPVVFWYQQNKNNEFKFLINFQNQEVLQQIDMTEKRFSAECPSNSPCSLEIQSSEAGDSALYLCASSLN 123 (270)
T ss_dssp --------T-TCCEEEEEEECTTCCEEEEEEEETTEEEEECHHHHHHEEEECCTTSCEEEEESSCCGGGCEEEEEEEESC
T ss_pred --------C-CCceEEEEEECCCCCcEEEEEECCCCceecCCccCCcEEEEeCCCcEEEEEECCCCHhHCeEEEEEEecC
Confidence 3 445666765 11111111 1 555543 345679999999999999999999863
Q ss_pred CCc------eEEEEEeec-------eeee-----eccccCCceEEEEEEEEccCC-CCCc-eecccccccceE----EEE
Q psy7039 219 LGT------ATASAHVTG-------TEFT-----DNNVHEGKAYEYRVSAVNAAG-TEKP-KISLDALIGKRI----KEF 274 (516)
Q Consensus 219 ~g~------~~~~~~~~~-------~~~~-----~~~l~~g~~~~~~~~~~~~~g-~p~p-~i~W~~~~~~~~----~~~ 274 (516)
.+. ....+.+.. .... ...+..|..+.+.|.+ .| .|.| .+.|.+. +..+ ...
T Consensus 124 ~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~---~g~~P~~~~v~W~k~-g~~l~~~~~~~ 199 (270)
T 3qib_D 124 WSQDTQYFGPGTRLLVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLA---TGFYPDHVELSWWVN-GKEVHSGVCTD 199 (270)
T ss_dssp TTCCCCEECCCEEEEEESCSTTCBCCEEEEEECCHHHHHHHSEEEEEEEE---EEEBSSCEEEEEEET-TEEECTTEEEC
T ss_pred CCccceEECCcEEEEEccccccccCCceEEECCCccccccCCceEEEEEe---cceeCCCeEEEEEEC-CEECCCCcccc
Confidence 211 011122211 1111 1123458999999998 45 5656 7899652 1111 000
Q ss_pred ----------Ee---cceeeEEEccCCCCC-ceEEEEEEEecCCCcc
Q psy7039 275 ----------VT---STTASLNIKNSVRKD-SGIYKIEAKNDYGIDM 307 (516)
Q Consensus 275 ----------~~---~~~~~l~i~~l~~~d-~g~y~c~a~n~~g~~~ 307 (516)
.. .....|.|......| .|.|+|.|.|......
T Consensus 200 ~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~~g~YtC~v~~~~l~~~ 246 (270)
T 3qib_D 200 PQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLSEN 246 (270)
T ss_dssp SSCEESCTTSSSCCEEEEEEEEEEHHHHHSTTCEEEEEEEECCBCTT
T ss_pred cccccccccCCCCCEEEEEEEEEcHHHhccCCCeEEEEEEecCCCCc
Confidence 00 011346677776666 9999999998765544
|
| >1dee_B IGM RF 2A2; FAB-IBP complex 2.7A resolution binding outside the antigen combining site superantigen FAB VH3 specificity; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1hez_B 1adq_H | Back alignment and structure |
|---|
Probab=99.19 E-value=2.4e-10 Score=104.19 Aligned_cols=159 Identities=11% Similarity=0.075 Sum_probs=99.3
Q ss_pred ccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcC--ceeeEEeeCC--ee---e------------
Q psy7039 121 LNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEP--FLNHGWSING--QV---C------------ 181 (516)
Q Consensus 121 ~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p--~~~i~W~~~~--~~---~------------ 181 (516)
+..+.+.+|+.+.|.|.+. +.+ .+.+.|++.. .. +
T Consensus 7 p~~~~v~~G~~v~L~C~~~--------------------------~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~ 60 (223)
T 1dee_B 7 SGGGVVQPGKSLRLSCAAS--------------------------GFTFSGYGMHWVRQAPGKGLEWVALISYDESNKYY 60 (223)
T ss_dssp ECCCEECTTCCEEEEEEEE--------------------------SSCGGGSCEEEEEECTTSCEEEEEEECTTSCCEEE
T ss_pred CCCEEEcCCCcEEEEEEec--------------------------CcccCCceEEEEEECCCCCcEEEEEEecCCCcccc
Confidence 3467899999999999998 332 3456665521 10 0
Q ss_pred c--cCCceEEeec--CCeeEEEeccCCCCCCeeEEEEEEcCCC---c-----eEEEEEeec-----ee-ee---eccccC
Q psy7039 182 Q--IGGRADVQTT--KSETVLDIPFCSRSDTGHYSLTLENNLG---T-----ATASAHVTG-----TE-FT---DNNVHE 240 (516)
Q Consensus 182 ~--~~~~~~~~~~--~~~~~l~i~~~~~~d~g~Y~c~~~~~~g---~-----~~~~~~~~~-----~~-~~---~~~l~~ 240 (516)
. ...|+.+... ....+|.|.+++.+|+|.|.|.+.+..| . ....+.+.. .. +. ...+.+
T Consensus 61 ~~~~~~R~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~ 140 (223)
T 1dee_B 61 ADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCAKVKFYDPTAPNDYWGQGTLVTVSSGSASAPTLFPLVSCENSNP 140 (223)
T ss_dssp CTTTBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEESSSSTTCCEEEECCCEEEEECSSCCBCCEEEEEECTTCCCS
T ss_pred CcccCCeEEEEecCCCCEEEEEECCCCHHHCEEEEEEEeccccCcccceeecCcEEEEEccCCCCCCEEEEecCCcccCC
Confidence 0 1246665543 3467999999999999999999998643 1 111222221 01 11 123457
Q ss_pred CceEEEEEEEEccCCC-CCc-eecccccccceEE-EE-----Eec----ceeeEEEccCCC--CCceEEEEEEEecCCCc
Q psy7039 241 GKAYEYRVSAVNAAGT-EKP-KISLDALIGKRIK-EF-----VTS----TTASLNIKNSVR--KDSGIYKIEAKNDYGID 306 (516)
Q Consensus 241 g~~~~~~~~~~~~~g~-p~p-~i~W~~~~~~~~~-~~-----~~~----~~~~l~i~~l~~--~d~g~y~c~a~n~~g~~ 306 (516)
|..+.+.|.+ .|. |.| .+.|.+..+..+. .. ... ....|.|..... +|.|.|+|.|.|..+..
T Consensus 141 g~~v~L~C~~---~g~~P~p~~v~W~~~~g~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~d~g~y~C~v~n~~~~~ 217 (223)
T 1dee_B 141 SSTVAVGCLA---QDFLPDSITFSWKYKNNSDISSTRGFPSVLRGGKYAATSQVLLPSKDVAQGTNEHVVCKVQHPNGNK 217 (223)
T ss_dssp SSEEEEEEEE---EEEBSSCCEEEEEETTSCBCSCEEECCCEEETTEEEEEEEEEEECTTTTSTTCCEEEEEEECTTCCE
T ss_pred CCcEEEEEEE---EEEeCCCeEEEeEccCCCccceeEECCccccCCeEEEEEEEEEcHHHhccCCCCEEEEEEEeCCCCC
Confidence 8999999998 454 666 8999762222110 00 001 134577777765 78899999999988765
Q ss_pred ce
Q psy7039 307 MA 308 (516)
Q Consensus 307 ~~ 308 (516)
..
T Consensus 218 ~~ 219 (223)
T 1dee_B 218 EK 219 (223)
T ss_dssp EE
T ss_pred cc
Confidence 43
|
| >3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} SCOP: b.1.1.0 | Back alignment and structure |
|---|
Probab=99.19 E-value=7.7e-11 Score=93.99 Aligned_cols=89 Identities=18% Similarity=0.362 Sum_probs=65.6
Q ss_pred cccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEE
Q psy7039 362 IRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSAS 441 (516)
Q Consensus 362 ~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s 441 (516)
+....+..|+.+.|.|.+.|.|.+.+.|++++..+....++.... ....|.|.++.. .|.|.|+|.|.|..|....+
T Consensus 17 ~~~~~v~~G~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~--~~~~L~i~~v~~-~D~G~Y~C~a~n~~g~~~~~ 93 (108)
T 3kvq_A 17 LENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKD--GNRNLTIRRVRK-EDEGLYTCQACSVLGCAKVE 93 (108)
T ss_dssp CCCEEEETTCCEEEECBCC----CCEEEEESSSBCCCBTTEEEET--TTTEEEECSCCG-GGCEEEEEEEC----CEEEE
T ss_pred CCCeEEeCCCeEEEEEECcCcCCCeEEEEECCeEcccCCCeEEeC--CCcEEEEeecCc-ccCEEEEEEEEeCCCceEEE
Confidence 456788999999999999999999999999998887666655443 335699999999 99999999999999999999
Q ss_pred EEEEEecCCCCC
Q psy7039 442 CKVYVVDKPSPP 453 (516)
Q Consensus 442 ~~l~v~~~p~~P 453 (516)
+.|.|..+|..|
T Consensus 94 ~~l~V~~~~~~~ 105 (108)
T 3kvq_A 94 AFFIIEGAQEKT 105 (108)
T ss_dssp EEEEEEC-----
T ss_pred EEEEEeCCCccc
Confidence 999999877655
|
| >2ee3_A Collagen alpha-1(XX) chain; KIAA1510, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.19 E-value=7.1e-11 Score=93.90 Aligned_cols=87 Identities=18% Similarity=0.242 Sum_probs=72.6
Q ss_pred CCCCCCCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCCCeEEeEEeecCCcEEEeCCCcCCCeEEEEEEE
Q psy7039 10 PFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVVVPAGETSCTVPGLIEGETYQFQVRA 89 (516)
Q Consensus 10 ~~~~p~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~~~a 89 (516)
...++++|.+|++.+++++++.|+|.+|. +.|.+|+|.|...++.+.....+.+..++++|.+|++++.|.++|.|
T Consensus 4 ~t~p~~pP~~l~~~~vt~tsi~vsW~pp~----~~i~~Y~I~y~~~~~~~~~~~~v~~~~t~~~l~~L~p~T~Y~v~V~A 79 (108)
T 2ee3_A 4 GSSGLAPPRHLGFSDVSHDAARVFWEGAP----RPVRLVRVTYVSSEGGHSGQTEAPGNATSAMLGPLSSSTTYTVRVTC 79 (108)
T ss_dssp CCCCCCCSSCEEEESCCSSCEEEEESCCS----SCCSEEEEEEEETTTCCBCCEEEETTCCEEEECSCCSSCEEEEEEEE
T ss_pred cccCCCCCceEEEEEccCCeEEEEeeCCC----CCccEEEEEEEeCCCCceeEEEcCCCcCEEEcCCCCCCCEEEEEEEE
Confidence 34567899999999999999999999873 46999999999876633333455667899999999999999999999
Q ss_pred ecCCCCCCCCC
Q psy7039 90 VNAAGPGEASK 100 (516)
Q Consensus 90 ~n~~g~~~~s~ 100 (516)
.|..|.+.++.
T Consensus 80 ~~~~g~s~p~~ 90 (108)
T 2ee3_A 80 LYPGGGSSTLT 90 (108)
T ss_dssp ECTTSCEEEEE
T ss_pred EeCCCcCCCcc
Confidence 99998877543
|
| >1dn0_B IGM-kappa cold agglutinin (heavy chain); FAB, antibody, human, immune system; 2.28A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1qlr_B* 2j6e_H* 2agj_H* 2h32_H | Back alignment and structure |
|---|
Probab=99.19 E-value=1.2e-10 Score=107.06 Aligned_cols=166 Identities=10% Similarity=0.085 Sum_probs=98.2
Q ss_pred cccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcC--ceeeEEeeCC--ee--------------e
Q psy7039 120 TLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEP--FLNHGWSING--QV--------------C 181 (516)
Q Consensus 120 ~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p--~~~i~W~~~~--~~--------------~ 181 (516)
.+..+.+.+|+.+.|.|.+. +.+ ...+.|++.. .. .
T Consensus 6 qp~~~~v~~G~~v~L~C~~~--------------------------~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~ 59 (232)
T 1dn0_B 6 QWGAGLLKPSETLSLTCAVY--------------------------GGSFSDYYWSWIRQPPGKGLEWIGEINHSGSTNY 59 (232)
T ss_dssp EECCCEECTTSCEEEEEEEE--------------------------SSCCSSCCEEEEEECTTSCCEEEEEECTTCCEEE
T ss_pred CCCCEEEeCCCcEEEEEEEc--------------------------cccCCCceEEEEEeCCCCCeEEEEEEecCCceee
Confidence 34557889999999999998 332 3456665521 10 0
Q ss_pred c--cCCceEEee--cCCeeEEEeccCCCCCCeeEEEEEEcCCC--c------eEEEEEeec-----eeee----eccccC
Q psy7039 182 Q--IGGRADVQT--TKSETVLDIPFCSRSDTGHYSLTLENNLG--T------ATASAHVTG-----TEFT----DNNVHE 240 (516)
Q Consensus 182 ~--~~~~~~~~~--~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g--~------~~~~~~~~~-----~~~~----~~~l~~ 240 (516)
. ...|+.+.. .+...+|.|.+++.+|+|.|.|.+.+..+ . ....+.+.. .... ...+..
T Consensus 60 ~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~p~~~~~~ 139 (232)
T 1dn0_B 60 NPSLKSRVTISVDTSKNQFSLKLSSVTAADTAVYYCARPPHDTSGHYWNYWGQGTLVTVSSGSASAPTLFPLVSCENSPS 139 (232)
T ss_dssp CTTTTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECSSTTSCSCCSEECCCEEEEECSSCCBCCEEEEEECC-----
T ss_pred CCccCCeEEEEEeCCCCEEEEEECCCCcccCEEEEEEEecCCcCCchhhhcccceEEEEccCCCCCCceEEeccccccCC
Confidence 0 135666654 23467999999999999999999983111 1 111222321 1111 112346
Q ss_pred C-ceEEEEEEEEccCCC-CCc-eecccccccceEE-EE-----Eec----ceeeEEEccCCC--CCceEEEEEEEecCCC
Q psy7039 241 G-KAYEYRVSAVNAAGT-EKP-KISLDALIGKRIK-EF-----VTS----TTASLNIKNSVR--KDSGIYKIEAKNDYGI 305 (516)
Q Consensus 241 g-~~~~~~~~~~~~~g~-p~p-~i~W~~~~~~~~~-~~-----~~~----~~~~l~i~~l~~--~d~g~y~c~a~n~~g~ 305 (516)
| ....+.|.+ .|. |.| .+.|.+..+.... .. ... ....|.|..... +|.|.|+|.|.|..+.
T Consensus 140 g~~~v~L~C~~---~g~~P~p~~v~W~~~~g~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~d~g~ytC~v~n~~~~ 216 (232)
T 1dn0_B 140 DTSSVAVGCLA---QDFLPDSITFSWKYKNNSDISSTRGFPSVLRGGKYAATSQVLLPSKDVMAGTDEHVVCKVQHPNGN 216 (232)
T ss_dssp -CCSEEEEEEE---EEEBSSCCEEEEEETTSCEECCEEECCCEEETTEEEEEEEEEECTTCC---CCCEEEEEEECTTCC
T ss_pred CCCcEEEEEEE---EEEeCCCeEEEEEcCCCCceeeEEECCccccCCcEEEEEEEEEcHHHhcccCCCeEEEEEEeCCCC
Confidence 7 899999998 443 666 8999762222211 00 011 134678888776 7899999999999887
Q ss_pred cceeEEEEE
Q psy7039 306 DMADIEVVV 314 (516)
Q Consensus 306 ~~~~~~l~v 314 (516)
......+.+
T Consensus 217 ~~~~~~i~~ 225 (232)
T 1dn0_B 217 KEKNVPLPV 225 (232)
T ss_dssp EEEEEECCC
T ss_pred cceeEecCC
Confidence 655544443
|
| >1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X | Back alignment and structure |
|---|
Probab=99.19 E-value=9.5e-11 Score=92.68 Aligned_cols=83 Identities=19% Similarity=0.338 Sum_probs=68.5
Q ss_pred EcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEEEE--cC---CeEEEEEcCceecCCceEEEEEEEcCCCceeEEE
Q psy7039 368 LAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFET--SE---NQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASC 442 (516)
Q Consensus 368 ~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~--~~---~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~ 442 (516)
..++.+.|.|.+.|.|.|.+.|++++..+..+.+..... .. ....|.|.++.. .|+|.|+|.|.|..|..+.++
T Consensus 14 ~~~~~~~~~c~v~G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~L~I~~v~~-~D~G~Y~C~A~N~~G~~~~~~ 92 (103)
T 1wwb_X 14 TSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTH-MNNGDYTLIAKNEYGKDEKQI 92 (103)
T ss_dssp CCCCEEEEEEEEECSSCCEEEEEETTEEECCCSSEEEEEEEECSSEEEEEEEEESCCG-GGCEEEEEEEECSSCEEEEEE
T ss_pred eECcEEEEEEEEEEeCCCEEEEEECCEECCCCCcEeEEEEecCCcEEEEEEEECCCCc-ccCEEEEEEEEeCCCcEeEEE
Confidence 357788999999999999999999999887665532221 11 234599999999 999999999999999999999
Q ss_pred EEEEecCCC
Q psy7039 443 KVYVVDKPS 451 (516)
Q Consensus 443 ~l~v~~~p~ 451 (516)
.|.|..+|.
T Consensus 93 ~l~V~~~P~ 101 (103)
T 1wwb_X 93 SAHFMGWPG 101 (103)
T ss_dssp EECCSCCCC
T ss_pred EEEECCCCC
Confidence 999987665
|
| >2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.19 E-value=7.7e-11 Score=92.54 Aligned_cols=90 Identities=23% Similarity=0.340 Sum_probs=73.0
Q ss_pred CCccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEE-ee
Q psy7039 113 APRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADV-QT 191 (516)
Q Consensus 113 ~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~-~~ 191 (516)
+|.|. ..+..+.+.+|+.+.|.|.+. +.|.+.+.|++++..+....+..+ ..
T Consensus 5 ~P~~~-~~p~~~~~~~G~~~~l~C~~~--------------------------g~p~p~v~W~~~g~~~~~~~~~~~~~~ 57 (100)
T 2kdg_A 5 PPRFI-QVPENMSIDEGRFCRMDFKVS--------------------------GLPAPDVSWYLNGRTVQSDDLHKMIVS 57 (100)
T ss_dssp EEECC-CCCCCEEEETTCCEEEEEECE--------------------------EESCCEEEEEETTEEECCCSSSCEEEE
T ss_pred CCeEE-eCCCCEEecCCCEEEEEEEEE--------------------------eeCCCEEEEEECCEECcCCCcEEEEEc
Confidence 55555 556778899999999999999 899999999999998877654333 33
Q ss_pred cCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEEee
Q psy7039 192 TKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVT 229 (516)
Q Consensus 192 ~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~~ 229 (516)
.+....|.|.+++.+|+|.|+|.+.|..|.......+.
T Consensus 58 ~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~ 95 (100)
T 2kdg_A 58 EKGLHSLIFEVVRASDAGAYACVAKNRAGEATFTVQLD 95 (100)
T ss_dssp TTTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEE
T ss_pred CCCeEEEEECCCCcccCEEEEEEEEcCCCeEEEEEEEE
Confidence 45557999999999999999999999998876555443
|
| >1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.19 E-value=8.3e-11 Score=92.16 Aligned_cols=89 Identities=22% Similarity=0.318 Sum_probs=72.4
Q ss_pred CCccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCC-ceEEee
Q psy7039 113 APRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGG-RADVQT 191 (516)
Q Consensus 113 ~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~-~~~~~~ 191 (516)
+|.+. ..+..+.+.+|+.+.|.|.+. +.|.+.+.|++++..+.... ++....
T Consensus 5 ~P~~~-~~~~~~~v~~G~~v~l~C~~~--------------------------g~p~p~v~W~k~~~~~~~~~~~~~~~~ 57 (99)
T 1u2h_A 5 PPTFK-VSLMDQSVREGQDVIMSIRVQ--------------------------GEPKPVVSWLRNRQPVRPDQRRFAEEA 57 (99)
T ss_dssp EEEEE-ECCCCEEEETTCCEEEEEEEE--------------------------EESCCEEEEEETTEECCCBTTEEEEEC
T ss_pred CCEEE-EcCCceEecCCCEEEEEEEEE--------------------------EcCCCEEEEEECCEECCCCCCEEEEEC
Confidence 45555 456678899999999999999 89999999999999887653 344444
Q ss_pred cCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEEe
Q psy7039 192 TKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHV 228 (516)
Q Consensus 192 ~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~ 228 (516)
.+...+|.|.+++.+|+|.|+|.+.|..|.......+
T Consensus 58 ~~~~~~L~i~~~~~~D~G~Y~C~a~N~~g~~~~~~~l 94 (99)
T 1u2h_A 58 EGGLCRLRILAAERGDAGFYTCKAVNEYGARQCEARL 94 (99)
T ss_dssp GGGEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred CCCEEEEEEccCCcCCCEEEEEEEEECCCceeEEEEE
Confidence 5556789999999999999999999998887665543
|
| >2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=99.19 E-value=1.3e-10 Score=90.34 Aligned_cols=85 Identities=12% Similarity=0.188 Sum_probs=71.6
Q ss_pred CCCccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEee
Q psy7039 112 LAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQT 191 (516)
Q Consensus 112 ~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~ 191 (516)
.+|.+. ..+..+.+.+|+.+.|.|.+. +.| +.+.|++++..+....++.+.
T Consensus 8 ~pp~~~-~~~~~~~v~~G~~v~l~C~~~--------------------------g~p-p~i~W~k~g~~~~~~~~~~~~- 58 (95)
T 2ckn_A 8 QPWGVP-VEVESLLVHPGDLLQLRCRLR--------------------------DDV-QSINWLRDGVQLVESNRTRIT- 58 (95)
T ss_dssp CSCCBT-TBBCCEEECTTSCEEEECCEE--------------------------SSC-CEEEEEBTTBCCCCCSSEEEC-
T ss_pred CCCEEE-cCcceEEEcCCCeEEEEEECC--------------------------CCC-CceEEEECCEecCCCCCEEEe-
Confidence 466666 667889999999999999999 887 799999999988877776553
Q ss_pred cCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEEe
Q psy7039 192 TKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHV 228 (516)
Q Consensus 192 ~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~ 228 (516)
...|.|.+++.+|+|.|+|.+.|..|.......+
T Consensus 59 ---~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l 92 (95)
T 2ckn_A 59 ---GEEVEVRDSIPADSGLYACVTSSPSGSDTTYFSV 92 (95)
T ss_dssp ---SSEEEESSCCGGGSEEEEEEEEETTEEEEEEEEE
T ss_pred ---CCEEEECCCChHHCEEEEEEeccCCCcEEEEEEE
Confidence 4589999999999999999999998887655543
|
| >2ede_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.18 E-value=2.6e-10 Score=91.91 Aligned_cols=92 Identities=22% Similarity=0.425 Sum_probs=73.8
Q ss_pred CCCCC-CCCCcceEEEee--eCCeeEEEecCCCCCCCCceeceEEEEEeCCC----CeEEeEEeecCCcEEEeCCCcCCC
Q psy7039 9 NPFDE-PGKPTDLEATDW--DKDHVDLQWTPPISDGGSPITGYVVEMKDKTG----NWEKAVVVPAGETSCTVPGLIEGE 81 (516)
Q Consensus 9 ~~~~~-p~~p~~l~~~~~--~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~----~~~~~~~~~~~~~~~~i~~l~~~~ 81 (516)
++++. |++|.+|++..+ ++++|.|+|.+|. +.++.|.+|.|+|+..+. .|... ......++++|.+|++++
T Consensus 3 T~~~~P~~~P~~l~~~~~~~~~~sv~l~W~~p~-~~~g~i~~Y~v~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~L~p~t 80 (114)
T 2ede_A 3 SGSSGPTSAPKDLTVITREGKPRAVIVSWQPPL-EANGKITAYILFYTLDKNIPIDDWIME-TISGDRLTHQIMDLNLDT 80 (114)
T ss_dssp CCCCCCCSCCEEEEEEECSSCSSCEEEEEECCS-SCSSCCSEEEEEEESCSSSCTTTSEEE-EEETTCCEEEECSCCSSC
T ss_pred CCCCCCCCCCcceEEEEccCCCCEEEEEECCCC-CCCCceeEEEEEEEeCCCCCccceEEE-EECCCceEEEEcCCCCCC
Confidence 44544 489999999988 7789999999986 444579999999987433 45433 345678999999999999
Q ss_pred eEEEEEEEecCCCCCCCCCCC
Q psy7039 82 TYQFQVRAVNAAGPGEASKPT 102 (516)
Q Consensus 82 ~y~~~~~a~n~~g~~~~s~~~ 102 (516)
.|.|+|+|.|..|.+.++...
T Consensus 81 ~Y~~~V~A~n~~G~g~~S~~~ 101 (114)
T 2ede_A 81 MYYFRIQARNSKGVGPLSDPI 101 (114)
T ss_dssp EEEEEEEEECSSCBCCCCCCE
T ss_pred EEEEEEEEEeCCcCcCCcccE
Confidence 999999999999998876543
|
| >1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A | Back alignment and structure |
|---|
Probab=99.18 E-value=3.5e-11 Score=95.76 Aligned_cols=86 Identities=26% Similarity=0.464 Sum_probs=77.6
Q ss_pred ccccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeE
Q psy7039 361 SIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSA 440 (516)
Q Consensus 361 ~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~ 440 (516)
.+....+..|+.+.|.|.+.|.|.+.+.|++++..+..+.++.+........|.|.++.. .|.|.|+|.|.|..|..+.
T Consensus 20 ~p~~~~v~~G~~v~L~C~~~g~p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~-~D~G~Y~C~a~N~~G~~~~ 98 (106)
T 1nct_A 20 KPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQA-SDEGNYSVVVENSEGKQEA 98 (106)
T ss_dssp CCCCEEESSSSCEECCEEEECSSCCBCCBCSSSSCCTTCSSEEEEECSSEEEEEECCCCS-SCCSEEEECCBCSSCBCCE
T ss_pred CCCCEEEeCCCcEEEEEEEEEcCCCEEEEEECCEECCCCCCEEEEECCCEEEEEECcCCc-hhCEEEEEEEEeCCCeEEE
Confidence 456678999999999999999999999999999988877888887777778999999999 9999999999999999888
Q ss_pred EEEEEEe
Q psy7039 441 SCKVYVV 447 (516)
Q Consensus 441 s~~l~v~ 447 (516)
++.|.|.
T Consensus 99 ~~~l~V~ 105 (106)
T 1nct_A 99 EFTLTIQ 105 (106)
T ss_dssp EEEEEEC
T ss_pred EEEEEEE
Confidence 8888874
|
| >1x5j_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 | Back alignment and structure |
|---|
Probab=99.18 E-value=1.9e-10 Score=92.58 Aligned_cols=93 Identities=18% Similarity=0.163 Sum_probs=72.0
Q ss_pred CCCCCCCCcceEEEeeeCCeeEEEecCCCCCCCCcee----ceEEEEEeCCC-CeEEeEEeecCCcEEEeCCCcCCCeEE
Q psy7039 10 PFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPIT----GYVVEMKDKTG-NWEKAVVVPAGETSCTVPGLIEGETYQ 84 (516)
Q Consensus 10 ~~~~p~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~----~Y~v~~~~~~~-~~~~~~~~~~~~~~~~i~~l~~~~~y~ 84 (516)
...+|++|.+|++..+++++|.|+|.+|...+ ..+. +|.|+|+.... .+. ........++++|.+|++++.|.
T Consensus 5 ~~~pp~~P~~l~~~~~s~tsi~lsW~~p~~~~-~~~~~~~~~Y~v~y~~~~~~~~~-~~~~~~~~~~~~i~gL~P~T~Y~ 82 (113)
T 1x5j_A 5 SSGPMMPPVGVQASILSHDTIRITWADNSLPK-HQKITDSRYYTVRWKTNIPANTK-YKNANATTLSYLVTGLKPNTLYE 82 (113)
T ss_dssp SCCCCCCCEEEEEEEEETTEEEEEEECTTSCS-SSCCCSSCEEEEEECBSSSSSCC-CEECCBCSSEEEEESCCTTCEEC
T ss_pred cCCCCCCCcceEEEEecCCEEEEEecCCCCcc-ccccCcCceEEEEEEECCCCCeE-EEEEecCcCEEEeCCCCCCcEEE
Confidence 45789999999999999999999999985333 3344 99999987322 221 12233468899999999999999
Q ss_pred EEEEEecCCCCCCCCCCCcc
Q psy7039 85 FQVRAVNAAGPGEASKPTAP 104 (516)
Q Consensus 85 ~~~~a~n~~g~~~~s~~~~~ 104 (516)
|+|+|.|..|.+.++.....
T Consensus 83 f~V~A~~~~G~g~~S~~v~~ 102 (113)
T 1x5j_A 83 FSVMVTKGRRSSTWSMTAHG 102 (113)
T ss_dssp CEEEEECSSCBCCCCCCCCE
T ss_pred EEEEEecCCccCCCcccEEe
Confidence 99999999998887655443
|
| >1dn0_B IGM-kappa cold agglutinin (heavy chain); FAB, antibody, human, immune system; 2.28A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1qlr_B* 2j6e_H* 2agj_H* 2h32_H | Back alignment and structure |
|---|
Probab=99.17 E-value=7.1e-10 Score=101.76 Aligned_cols=176 Identities=12% Similarity=0.081 Sum_probs=102.1
Q ss_pred ccccCCceEEEEEEEEccCCC--CCceecccccc-----------------------cceEEEEEe--cceeeEEEccCC
Q psy7039 236 NNVHEGKAYEYRVSAVNAAGT--EKPKISLDALI-----------------------GKRIKEFVT--STTASLNIKNSV 288 (516)
Q Consensus 236 ~~l~~g~~~~~~~~~~~~~g~--p~p~i~W~~~~-----------------------~~~~~~~~~--~~~~~l~i~~l~ 288 (516)
..+.+|+.+.|.|.+ .+. ..+.+.|.+.. ..++.+... .....|.|.+++
T Consensus 10 ~~v~~G~~v~L~C~~---~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~ 86 (232)
T 1dn0_B 10 GLLKPSETLSLTCAV---YGGSFSDYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDTSKNQFSLKLSSVT 86 (232)
T ss_dssp CEECTTSCEEEEEEE---ESSCCSSCCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEETTTTEEEEEECSCC
T ss_pred EEEeCCCcEEEEEEE---ccccCCCceEEEEEeCCCCCeEEEEEEecCCceeeCCccCCeEEEEEeCCCCEEEEEECCCC
Confidence 456789999999987 333 25778885421 112222221 235589999999
Q ss_pred CCCceEEEEEEEecC--CC----cceeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeecccccccccc
Q psy7039 289 RKDSGIYKIEAKNDY--GI----DMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSI 362 (516)
Q Consensus 289 ~~d~g~y~c~a~n~~--g~----~~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~ 362 (516)
.+|+|.|.|.+.+.. +. ......|.|...+.. .|... + ..
T Consensus 87 ~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~~~~--~P~v~---------~-----------------------~~ 132 (232)
T 1dn0_B 87 AADTAVYYCARPPHDTSGHYWNYWGQGTLVTVSSGSAS--APTLF---------P-----------------------LV 132 (232)
T ss_dssp GGGCEEEEEEECSSTTSCSCCSEECCCEEEEECSSCCB--CCEEE---------E-----------------------EE
T ss_pred cccCEEEEEEEecCCcCCchhhhcccceEEEEccCCCC--CCceE---------E-----------------------ec
Confidence 999999999998422 11 112346777652211 11000 0 00
Q ss_pred ccEEEEcC-CeEEEEEEEeee-cCC-ceEEEE-CCeecCCCCce-EEEEcCC---eEEEEEcCceec-CCceEEEEEEEc
Q psy7039 363 RDMTVLAG-EEFTITVPFSGR-PKP-TPIWTV-NGDEVSPDGRI-KFETSEN---QTIYRNKSAKRA-TDSGSYTIQLVN 433 (516)
Q Consensus 363 ~~~~v~~g-~~~~l~C~~~g~-p~~-~i~W~~-~~~~l~~~~~~-~~~~~~~---~~~l~i~~~~~~-~~~g~y~c~a~n 433 (516)
....+..| +.+.|.|.+.+. |.+ .+.|++ +|..+.....+ .....+. .+.|.|...... +|.|.|+|.|.|
T Consensus 133 p~~~~~~g~~~v~L~C~~~g~~P~p~~v~W~~~~g~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~d~g~ytC~v~n 212 (232)
T 1dn0_B 133 SCENSPSDTSSVAVGCLAQDFLPDSITFSWKYKNNSDISSTRGFPSVLRGGKYAATSQVLLPSKDVMAGTDEHVVCKVQH 212 (232)
T ss_dssp CC------CCSEEEEEEEEEEBSSCCEEEEEETTSCEECCEEECCCEEETTEEEEEEEEEECTTCC---CCCEEEEEEEC
T ss_pred cccccCCCCCcEEEEEEEEEEeCCCeEEEEEcCCCCceeeEEECCccccCCcEEEEEEEEEcHHHhcccCCCeEEEEEEe
Confidence 01123467 899999999986 766 999999 88766430000 0001111 245788766420 258999999999
Q ss_pred CCCceeEEEEEEEec
Q psy7039 434 TVGSDSASCKVYVVD 448 (516)
Q Consensus 434 ~~G~~s~s~~l~v~~ 448 (516)
..|.......+.+..
T Consensus 213 ~~~~~~~~~~i~~~~ 227 (232)
T 1dn0_B 213 PNGNKEKNVPLPVIA 227 (232)
T ss_dssp TTCCEEEEEECCC--
T ss_pred CCCCcceeEecCCCC
Confidence 999877666665543
|
| >3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C | Back alignment and structure |
|---|
Probab=99.17 E-value=1.3e-10 Score=106.02 Aligned_cols=133 Identities=18% Similarity=0.225 Sum_probs=95.9
Q ss_pred CCcEEEeCCCcCCCeEEEEEEEecCCCCCCCCCCCcceEec-cCCCCCccccCcccceEEecCCeEEEEEeeeecccccc
Q psy7039 68 GETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAK-PKNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTK 146 (516)
Q Consensus 68 ~~~~~~i~~l~~~~~y~~~~~a~n~~g~~~~s~~~~~~~~~-~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~ 146 (516)
....|.|.+++..|.|.|+|.|.|..|... ....+.+. ....+|.+....+....+.+|+.+.|.|.+.
T Consensus 74 ~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~---~~~~l~V~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~------- 143 (231)
T 3ojm_B 74 QHWSLIMESVVPSDKGNYTCVVENEYGSIN---HTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKVY------- 143 (231)
T ss_dssp GGTEEEECSCCGGGCEEEEEEEEETTEEEE---EEEEEEEECCCCCCCEECTTCSCCEEEETTCCEEEECCEE-------
T ss_pred CcceEEEecCCcccCEEEEEEEecccCccc---ccEEEEEEcCCCCCCceeeccCCceEEEeCCcEEEEEEEe-------
Confidence 456899999999999999999998776432 12222222 2223444443456778899999999999999
Q ss_pred CccccccccccCccceeecCcCceeeEEee----CCeeeccCCceEE--ee-----cCCeeEEEeccCCCCCCeeEEEEE
Q psy7039 147 SPLRALGVRANSTKGWVKLSEPFLNHGWSI----NGQVCQIGGRADV--QT-----TKSETVLDIPFCSRSDTGHYSLTL 215 (516)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~----~~~~~~~~~~~~~--~~-----~~~~~~l~i~~~~~~d~g~Y~c~~ 215 (516)
+.|.+.+.|++ ++..+........ .. ......|.|.+++.+|+|.|+|.+
T Consensus 144 -------------------~~p~p~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a 204 (231)
T 3ojm_B 144 -------------------SDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKV 204 (231)
T ss_dssp -------------------CSSCCEEEEEEECCBTTBSBCTTSCBCEEEEEECSTTCSCTTEEEECSCCGGGCEEEEEEE
T ss_pred -------------------cCCCCEEEEEECCCCCCccccCCCcceEeEecccccccCCccEEEEecCCHHHCeEEEEEE
Confidence 89999999999 7776654332211 11 123457999999999999999999
Q ss_pred EcCCCceEEEEEee
Q psy7039 216 ENNLGTATASAHVT 229 (516)
Q Consensus 216 ~~~~g~~~~~~~~~ 229 (516)
.|..|.......+.
T Consensus 205 ~n~~g~~~~~~~l~ 218 (231)
T 3ojm_B 205 SNYIGQANQSAWLT 218 (231)
T ss_dssp EETTEEEEEEEEEE
T ss_pred EeccceEeeEEEEE
Confidence 99988876555443
|
| >2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A | Back alignment and structure |
|---|
Probab=99.17 E-value=7.1e-11 Score=106.43 Aligned_cols=118 Identities=15% Similarity=0.161 Sum_probs=86.2
Q ss_pred EEeCCCcCCCeEEEEEEEecCCCCCCCCCCCcceEeccCCCCCccccCcccceEEecCCeEEEEEee-eeccccccCccc
Q psy7039 72 CTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAPRIDRSTLNDVKIKAGQSFSFDVKE-FRELSYTKSPLR 150 (516)
Q Consensus 72 ~~i~~l~~~~~y~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~-~~~~~~~~~~~~ 150 (516)
+.|.+++..|.|.|+|.|.|..|........ +.+.. .+|.+. ..+....+.+|+.+.|.|.+ .
T Consensus 74 l~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~~--l~V~~--~~~~~~-~~~~~~~~~~g~~~~l~C~~~~----------- 137 (212)
T 2v9r_A 74 IVHGRKSRPDEGVYVCVARNYLGEAVSHDAS--LEVAI--LRDDFR-QNPSDVMVAVGEPAVMECQPPR----------- 137 (212)
T ss_dssp CCCCSSCCCSCEEEEEEEEETTEEEECCCEE--EEECE--ECSSCS-BCCCCEEEETTSCEEEECBCCC-----------
T ss_pred EEecCCCcccCeEEEEEEECCCCceeecceE--EEEEe--ccccce-eCCCceEecCCCcEEEEEecCC-----------
Confidence 4456678999999999999977653222222 22221 123333 44566789999999999998 7
Q ss_pred cccccccCccceeecCcCceeeEEeeCCeeeccCCceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCceE
Q psy7039 151 ALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTAT 223 (516)
Q Consensus 151 ~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~ 223 (516)
+.|.+.+.|++++..+....+..... ...|.|.+++.+|+|.|+|.+.|..|...
T Consensus 138 ---------------~~p~~~v~W~~~~~~l~~~~~~~~~~---~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~ 192 (212)
T 2v9r_A 138 ---------------GHPEPTISWKKDGSPLDDKDERITIR---GGKLMITYTRKSDAGKYVCVGTNMVGERE 192 (212)
T ss_dssp ---------------EESCCEEEEEETTEEECTTSTTEEEE---TTEEEESSCCGGGCEEEEEEEEETTEEEE
T ss_pred ---------------CCCCCEEEEEECCccCCCCcceEEcc---CCeEEEeeCCHhhCeeEEEEEecccCcee
Confidence 88999999999999887543322221 24899999999999999999999887654
|
| >3e0g_A Leukemia inhibitory factor receptor; IG domain, cytokine binding homology region (CHR), cell MEMB disease mutation, glycoprotein, membrane; HET: NAG MAN FUC; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.17 E-value=6.9e-09 Score=104.48 Aligned_cols=215 Identities=13% Similarity=0.152 Sum_probs=130.7
Q ss_pred eeccccCCceEEEEEEEEccCCCCCceecccccccceEEEEEecceeeEEEccCCCC--CceEEEEEEEecCCCcceeEE
Q psy7039 234 TDNNVHEGKAYEYRVSAVNAAGTEKPKISLDALIGKRIKEFVTSTTASLNIKNSVRK--DSGIYKIEAKNDYGIDMADIE 311 (516)
Q Consensus 234 ~~~~l~~g~~~~~~~~~~~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~l~i~~l~~~--d~g~y~c~a~n~~g~~~~~~~ 311 (516)
....+..|..+++.|..... .....-................++|.|+... ...+|.|... .......
T Consensus 206 ~~~vv~~GS~vt~~Ci~~~~------~~~~~l~~~~~~~~~l~~~~~~i~v~nl~~~~~sg~n~~C~~~----~~~~g~~ 275 (483)
T 3e0g_A 206 QDKVILVGSDITFCCVSQEK------VLSALIGHTNCPLIHLDGENVAIKIRNISVSASSGTNVVFTTE----DNIFGTV 275 (483)
T ss_dssp CSEEEETTCCEEEEECCSSC------EEEEESSSCCBCCEECSSSCEEEEECSCCCCCSSCEEEEEEES----SCEEEEE
T ss_pred cCCEEeCCCCEEEEEEeCcc------ccceecCcccceeEEecCCEEEEEEeCCCCccCccceEEEecC----CcccceE
Confidence 34456789999999976211 1111001111111234556678888888653 3457999852 2344566
Q ss_pred EEEecCCCCCCCCceeeeccCCeeEEEecCCCCCC--CCceeeccccccccccccEEEEcCCeEEEEEEEeeecCCceEE
Q psy7039 312 VVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDG--GTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIW 389 (516)
Q Consensus 312 l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~--~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W 389 (516)
+.+..+|..|.. +.+......++.++|.++.+.+ |...+.|...- ...|.. ..|.....
T Consensus 276 l~vg~PP~~P~n-lsC~s~~~~sltCsW~pg~dt~l~G~~~t~YtL~y---------~~~g~~--~~C~~~~~------- 336 (483)
T 3e0g_A 276 IFAGYPPDTPQQ-LNCETHDLKEIICSWNPGRVTALVGPRATSYTLVE---------SFSGKY--VRLKRAEA------- 336 (483)
T ss_dssp EEEECCCCCCEE-EEEEBSSTTEEEEEEECCSCCSCCGGGCCEEEEEE---------TTTCCE--EEECCCSS-------
T ss_pred EECcCCCCCCCc-cEEEecCCCEEEEEECCCCcCCcCCCCCeeEEEEE---------EECCCC--ccccCCcc-------
Confidence 777666665544 6777667789999999987653 33344441000 001111 22321000
Q ss_pred EECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEEEEe--cCCCCCCCCcccccccCCeE
Q psy7039 390 TVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVV--DKPSPPQGPLDVSDITPESC 467 (516)
Q Consensus 390 ~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~v~--~~p~~P~~~l~~~~~~~~~~ 467 (516)
. .+......|..+.. ...|.+++.|.|..|.......+.+. .+|.|| .++++..+....+
T Consensus 337 ---------~-------~~~~~~C~~~~l~~-~t~Y~f~V~A~N~lG~~~S~~~~~~~~~VkP~PP-~nl~v~~~~stsl 398 (483)
T 3e0g_A 337 ---------P-------TNESYQLLFQMLPN-QEIYNFTLNAHNPLGRSQSTILVNITEKVYPHTP-TSFKVKDINSTAV 398 (483)
T ss_dssp ---------C-------SCSCEEEEEECCTT-CCCEEEEEEEECSSCEEEEEEEECGGGGBCCCCC-EEEEECCSSSSSC
T ss_pred ---------c-------CCCEEEEEEccCCC-CcEEEEEEEEEeCCCCcccceEEEeccccCCCCC-eeeEEEEecCCeE
Confidence 0 01123466667777 88899999999999987644333222 367777 7888887788999
Q ss_pred EEEeeCCCCCCCCCcceEEEEEEecCCCc
Q psy7039 468 SLSWKPPLDDGGSPITNYVVEKYESATGV 496 (516)
Q Consensus 468 ~l~W~~p~~~~~~~i~~Y~v~~~~~~~~~ 496 (516)
.|+|++|. ..+..+..|.|+|+..+...
T Consensus 399 ~LsW~~P~-~~~~~~L~YeVrYr~~~~~~ 426 (483)
T 3e0g_A 399 KLSWHLPG-NFAKINFLCEIEIKKSNSVQ 426 (483)
T ss_dssp CEEEECCS-CCTTSBCCCEEEEECSSSCC
T ss_pred EEEECCCC-CCCCceEEEEEEEEECCCCC
Confidence 99999986 34455789999999886643
|
| >2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 | Back alignment and structure |
|---|
Probab=99.17 E-value=5.4e-11 Score=96.76 Aligned_cols=93 Identities=19% Similarity=0.195 Sum_probs=73.4
Q ss_pred cccccEEEEcCCeEEEEEEEeee---cCCceEEEECCeec-C--CCCceEEEEc--C----CeEEEEEcCceecCCceEE
Q psy7039 360 LSIRDMTVLAGEEFTITVPFSGR---PKPTPIWTVNGDEV-S--PDGRIKFETS--E----NQTIYRNKSAKRATDSGSY 427 (516)
Q Consensus 360 ~~~~~~~v~~g~~~~l~C~~~g~---p~~~i~W~~~~~~l-~--~~~~~~~~~~--~----~~~~l~i~~~~~~~~~g~y 427 (516)
..+.++.+.+|+.+.|.|.+.|. |.|.|.|+++.... . ...++.+... . ....|.|.++.. .|+|.|
T Consensus 12 ~~P~~v~V~eG~~v~L~C~v~g~~~~p~P~V~W~Kgk~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~-~DaG~Y 90 (126)
T 2dav_A 12 EKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKD-NFAGNY 90 (126)
T ss_dssp SCCCCCEEETTCCEEEEEEEECCCSSSCCEEEEEESSSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCT-TSCEEE
T ss_pred EcCCCeEEeCCCCEEEEEEEeccCCCCCCcEEEeeCcCcccCCCCCceEEEccccccccccceEEEEEccCCc-ccCEEE
Confidence 45677889999999999999875 88999999974211 1 1344444321 1 146899999999 999999
Q ss_pred EEEEEcCCCceeEEEEEEEec-CCCCC
Q psy7039 428 TIQLVNTVGSDSASCKVYVVD-KPSPP 453 (516)
Q Consensus 428 ~c~a~n~~G~~s~s~~l~v~~-~p~~P 453 (516)
+|.|.|..|..+.++.|+|.. ++..|
T Consensus 91 ~Cevsn~~g~~~~~~~L~V~~~~~~~p 117 (126)
T 2dav_A 91 RCEVTYKDKFDSCSFDLEVHESTGTTP 117 (126)
T ss_dssp EEEEECSSCEEEECCEEEEECCCCSCC
T ss_pred EEEEEeCCCcEEEEEEEEEEecCCCCC
Confidence 999999999999999999998 66666
|
| >1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 | Back alignment and structure |
|---|
Probab=99.17 E-value=2.5e-10 Score=90.18 Aligned_cols=87 Identities=23% Similarity=0.401 Sum_probs=75.1
Q ss_pred ccccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCC--ceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCce
Q psy7039 361 SIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDG--RIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSD 438 (516)
Q Consensus 361 ~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~--~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~ 438 (516)
.+.+..+..|+.+.|.|.+.+ +.+.+.|++++..+..+. ++.+...+....|.|.++.. .|+|.|+|.|.| .
T Consensus 13 ~~~~~~v~~G~~v~l~C~~~~-~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~L~I~~~~~-~D~G~Y~C~a~n----~ 86 (103)
T 1x44_A 13 QLEDTTAYCGERVELECEVSE-DDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATK-ADAAEYSVMTTG----G 86 (103)
T ss_dssp CCCCEEEETTEEEEEEEECSS-SSCCCEEEETTEECCCSTTCSEEEEEETTEEEEEEEEECT-TTCSEEEEEETT----E
T ss_pred cCCCEEEECCCCEEEEEEecC-CCCeEEEEECCEECCCCCceEEEEEEcCCEEEEEECCCCc-ccCEEEEEEECC----C
Confidence 456688999999999999987 778999999999987776 66887777778999999999 999999999987 5
Q ss_pred eEEEEEEEecCCCCC
Q psy7039 439 SASCKVYVVDKPSPP 453 (516)
Q Consensus 439 s~s~~l~v~~~p~~P 453 (516)
+.++.|.|..+|.++
T Consensus 87 ~~~~~l~V~~~p~p~ 101 (103)
T 1x44_A 87 QSSAKLSVDLKSGPS 101 (103)
T ss_dssp EEEEEEEEECCCSCC
T ss_pred cEEEEEEEeCCCCCC
Confidence 777889998877765
|
| >1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A | Back alignment and structure |
|---|
Probab=99.17 E-value=2.5e-10 Score=88.32 Aligned_cols=82 Identities=16% Similarity=0.295 Sum_probs=70.4
Q ss_pred ccccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeE
Q psy7039 361 SIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSA 440 (516)
Q Consensus 361 ~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~ 440 (516)
.+.+..+.+|+.+.|.|.+.+ +++.+.|+++|..+..+.++.+...+....|.|.++.. .|+|.|+|.|.|. ..
T Consensus 11 ~~~~~~v~~G~~v~l~C~v~~-~~~~v~W~k~g~~i~~~~~~~i~~~g~~~~L~I~~v~~-~D~G~Y~C~a~n~----~~ 84 (93)
T 1waa_A 11 PLYGVEVFVGETAHFEIELSE-PDVHGQWKLKGQPLAASPDCEIIEDGKKHILILHNCQL-GMTGEVSFQAANT----KS 84 (93)
T ss_dssp CCCCEEEETTSCEEEEEEESS-SSCCCEEEETTEECCCBTTEEEEEETTEEEEEECSCCG-GGCEEEEEEETTE----EE
T ss_pred cCcceEEeCCCCEEEEEEECC-CCCeEEEEECCEECcCCCCEEEEEECCEEEEEECCCCh-hhCEEEEEEECCC----cE
Confidence 456788999999999999976 45789999999999888888888777778999999999 9999999999874 45
Q ss_pred EEEEEEec
Q psy7039 441 SCKVYVVD 448 (516)
Q Consensus 441 s~~l~v~~ 448 (516)
++.|.|..
T Consensus 85 sa~L~V~~ 92 (93)
T 1waa_A 85 AANLKVKE 92 (93)
T ss_dssp EEEEEEEC
T ss_pred EEEEEEEc
Confidence 67777764
|
| >2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.17 E-value=2e-10 Score=92.00 Aligned_cols=88 Identities=19% Similarity=0.295 Sum_probs=72.9
Q ss_pred CCCccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeecc-CCceEEe
Q psy7039 112 LAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQI-GGRADVQ 190 (516)
Q Consensus 112 ~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~-~~~~~~~ 190 (516)
.+|.|. ..+..+.+.+|+.+.|.|.+. +.|.+.+.|++++..+.. ..++.+.
T Consensus 7 ~~P~~~-~~~~~~~v~~G~~v~l~C~~~--------------------------g~p~p~v~W~k~g~~~~~~~~~~~~~ 59 (110)
T 2dm2_A 7 GAPFFE-MKLKHYKIFEGMPVTFTCRVA--------------------------GNPKPKIYWFKDGKQISPKSDHYTIQ 59 (110)
T ss_dssp CCCCBS-SCCCCEEEETTCCEEEEEEBC--------------------------CSSCCEEEEECSSCBCCTTCSSEEEE
T ss_pred CCCEEE-ecCcCeEEeCCCeEEEEEEEE--------------------------ecCCCEEEEEECCEECCCCCCeEEEE
Confidence 466666 566778999999999999999 999999999999988875 4566665
Q ss_pred ec-CCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEE
Q psy7039 191 TT-KSETVLDIPFCSRSDTGHYSLTLENNLGTATASA 226 (516)
Q Consensus 191 ~~-~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~ 226 (516)
.. .....|.|.+++.+|+|.|+|.+.|..|......
T Consensus 60 ~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~ 96 (110)
T 2dm2_A 60 RDLDGTCSLHTTASTLDDDGNYTIMAANPQGRISCTG 96 (110)
T ss_dssp ECTTCEEEEEESSCCTTTCSCCEEEEECTTCCEEECC
T ss_pred ECCCcEEEEEECCCChhhCEEEEEEEEECCCeEEEEE
Confidence 44 3446899999999999999999999988765443
|
| >1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.17 E-value=1.3e-10 Score=102.98 Aligned_cols=118 Identities=11% Similarity=0.054 Sum_probs=85.9
Q ss_pred CCcEEEeCCCcCCCeEEEEEEEecCCCCCCCCCCCcceEeccCCCCCccccCcccceEEecCCeEEEEEeeeeccccccC
Q psy7039 68 GETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKS 147 (516)
Q Consensus 68 ~~~~~~i~~l~~~~~y~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~ 147 (516)
....|.|.+++..|.|.|+|.|.|..+.+..+. ...+.+.....+|.+. ..+ ...+.+|+.+.|.|.+.
T Consensus 55 ~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~s~-~~~l~V~~~~~~p~i~-~~p-~~~v~~G~~v~L~C~~~-------- 123 (188)
T 1oll_A 55 NKVKFYIPDMNSRMAGQYSCIYRVGELWSEPSN-LLDLVVTEMYDTPTLS-VHP-GPEVISGEKVTFYCRLD-------- 123 (188)
T ss_dssp CEEEEEESSCCGGGCEEEEEEEEETTEECCCCC-CEEEEEESCSCCCEEE-EES-CSEEETTCEEEEEEECS--------
T ss_pred ceeEEEeCcCCcccCeEEEEEecCCCCCCCCCC-ceEEEecccCCCCeEE-ECC-CCccccCCEEEEEEEcC--------
Confidence 456899999999999999999988655443332 2233333333456665 223 35688999999999987
Q ss_pred ccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCC
Q psy7039 148 PLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNL 219 (516)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~ 219 (516)
+. .+.+.|++++..+.. ..........|.|.+++.+|+|.|+|.+.|..
T Consensus 124 ------------------~~-~~~~~w~k~g~~~~~----~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~ 172 (188)
T 1oll_A 124 ------------------TA-TSMFLLLKEGRSSHV----QRGYGKVQAEFPLGPVTTAHRGTYRCFGSYNN 172 (188)
T ss_dssp ------------------SS-CSEEEEEEESSSCEE----EEEECSSEEEEEEEECCGGGCEEEEEECEEET
T ss_pred ------------------CC-CCEEEEEECCccccc----cccCCCceeEEEECCCCcCCCcEEEEEEEcCC
Confidence 53 468999998876543 12234567899999999999999999998753
|
| >3qhz_H Human monoclonal antibody DEL2D1, FAB heavy chain; immunoglobulin, immune recognition, influenza A hemagglutini system; 1.55A {Homo sapiens} PDB: 3lzf_H* 3qrg_H* 3mod_H 3mob_H 3moa_H 3lev_H* 3idg_B 3d0l_B 3d0v_B 3idi_B 3idj_B 3idm_B* 3idn_B* 1tjg_H* 1tjh_H* 1tji_H* 2pr4_H 3drq_B 2p8m_B 2p8p_B ... | Back alignment and structure |
|---|
Probab=99.16 E-value=7.7e-10 Score=101.48 Aligned_cols=128 Identities=13% Similarity=0.072 Sum_probs=79.0
Q ss_pred ceeeEEEccCCCCCceEEEEEEEecC--------CCcceeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCc
Q psy7039 278 TTASLNIKNSVRKDSGIYKIEAKNDY--------GIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTP 349 (516)
Q Consensus 278 ~~~~l~i~~l~~~d~g~y~c~a~n~~--------g~~~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~ 349 (516)
....|.|.+++.+|+|.|.|.+.+.. ........+.|...+.. .|.. .
T Consensus 81 ~~~sL~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~--~P~v-~--------------------- 136 (232)
T 3qhz_H 81 SQVVLTMTNMDPVDTATYYCARTLRVSGDYVRDFDLWGRGTLVTVSSASTK--GPSV-F--------------------- 136 (232)
T ss_dssp TEEEEEECSCCGGGCEEEEEEEECCC---CCCCCCEECCCEEEEECSSCCB--CCEE-E---------------------
T ss_pred CEEEEEECcCChhhCEEEEEEEeeccCccccccceeeCCCeEEEEecCCCC--CCEE-E---------------------
Confidence 45689999999999999999998763 11222345555532211 1100 0
Q ss_pred eeeccccccccccccEEEEcCCeEEEEEEEeeecCC--ceEEEECCeecC---------CCCceEEEEcCCeEEEEEcCc
Q psy7039 350 ITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKP--TPIWTVNGDEVS---------PDGRIKFETSENQTIYRNKSA 418 (516)
Q Consensus 350 i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~--~i~W~~~~~~l~---------~~~~~~~~~~~~~~~l~i~~~ 418 (516)
.......+..|+.+.|.|.+.+.+++ .+.|++++..+. .+..|... +.|.|...
T Consensus 137 ----------~~~~~~~~~~g~~v~L~C~~~~~~P~~~~v~W~~~g~~~~~~~~~~~~~~~g~~~~~-----s~L~i~~~ 201 (232)
T 3qhz_H 137 ----------PLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLS-----SVVTVPSS 201 (232)
T ss_dssp ----------EECC-------CEEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEECTTSCEEEE-----EEEEEEGG
T ss_pred ----------EecccccccCCCcEEEEEEEeeEeCCCeEEEEEECCEecceeeccceeCCCCCEEEE-----EEEEEchh
Confidence 00112234569999999999986553 577999886331 12222222 46888888
Q ss_pred eecCCceEEEEEEEcCCCceeEEEEEEE
Q psy7039 419 KRATDSGSYTIQLVNTVGSDSASCKVYV 446 (516)
Q Consensus 419 ~~~~~~g~y~c~a~n~~G~~s~s~~l~v 446 (516)
.. .+ |.|+|.|.|..+.......+.+
T Consensus 202 ~~-~~-g~ytC~v~~~~~~~~~~~~l~~ 227 (232)
T 3qhz_H 202 SL-GT-QTYICNVNHKPSNTKVDKRVEP 227 (232)
T ss_dssp GG-GT-CCCEEEEEEGGGTEEEEEECCC
T ss_pred hc-CC-CEEEEEEEeCCCCccEEEEeCC
Confidence 87 78 9999999999887766655543
|
| >2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.16 E-value=2.1e-10 Score=90.08 Aligned_cols=77 Identities=19% Similarity=0.252 Sum_probs=68.4
Q ss_pred CCccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEeec
Q psy7039 113 APRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTT 192 (516)
Q Consensus 113 ~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~ 192 (516)
+|.|. ..+.++.+.+|+.+.|.|.+. |.+.+.|++++..+....++.+...
T Consensus 7 p~~~~-~~~~~~~v~~G~~v~l~C~v~----------------------------p~p~v~W~k~g~~l~~~~r~~i~~~ 57 (100)
T 2yuz_A 7 GLKIL-TPLTDQTVNLGKEICLKCEIS----------------------------ENIPGKWTKNGLPVQESDRLKVVQK 57 (100)
T ss_dssp CCCCS-BCCCCEEEETTSCCCEEEECS----------------------------SCCCEEEEETTEECCCCSSEEEEEC
T ss_pred CCEEe-ccCCceEEcCCCCEEEEEEeC----------------------------CCCeEEEEECCEECCCCCcEEEEEe
Confidence 55565 677889999999999999874 5678999999999998899998888
Q ss_pred CCeeEEEeccCCCCCCeeEEEEEEcC
Q psy7039 193 KSETVLDIPFCSRSDTGHYSLTLENN 218 (516)
Q Consensus 193 ~~~~~l~i~~~~~~d~g~Y~c~~~~~ 218 (516)
+....|.|.+++.+|+|.|+|.+.|.
T Consensus 58 ~~~~~L~I~~v~~~D~G~Y~C~a~N~ 83 (100)
T 2yuz_A 58 GRIHKLVIANALTEDEGDYVFAPDAY 83 (100)
T ss_dssp SSEEEEEESSCCGGGCSEEEEEESSS
T ss_pred CCEEEEEECCCChhhCEEEEEEEcCC
Confidence 88889999999999999999999987
|
| >3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A | Back alignment and structure |
|---|
Probab=99.16 E-value=3.5e-10 Score=102.75 Aligned_cols=170 Identities=13% Similarity=0.048 Sum_probs=111.9
Q ss_pred cccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcC-----ceeeEEeeCCeeec---------c--
Q psy7039 120 TLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEP-----FLNHGWSINGQVCQ---------I-- 183 (516)
Q Consensus 120 ~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-----~~~i~W~~~~~~~~---------~-- 183 (516)
++..+.+.+|+.+.|.|.+. +.| ...+.|++++..+. .
T Consensus 7 p~~~v~~~~G~~v~L~C~~~--------------------------~~p~~~~~~~~v~W~~~~~~v~~~~~g~~~~~~~ 60 (222)
T 3sbw_C 7 PKDLYVVEYGSNMTIECKFP--------------------------VEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQ 60 (222)
T ss_dssp SCSEEEEETTSCEEEEEECC--------------------------CCSSCCTTTCEEEEEETTEEEEEEETTEECSSSS
T ss_pred CCccEEEEcCCcEEEEeEec--------------------------CCCCCCCccEEEEEEECCcEEEEEeCCccccccc
Confidence 44567889999999999987 544 34788888653221 0
Q ss_pred ----CCceEEee---cCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEEeeceee-------eeccccCCceEEEEEE
Q psy7039 184 ----GGRADVQT---TKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVTGTEF-------TDNNVHEGKAYEYRVS 249 (516)
Q Consensus 184 ----~~~~~~~~---~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~~~~~~-------~~~~l~~g~~~~~~~~ 249 (516)
..|..+.. .....+|.|.+++.+|+|.|+|.+.+ .+.......+.+... ....+..|..+.+.|.
T Consensus 61 ~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~-~~~~~~~~~l~V~~~~~~~~~~~~~~~~~g~~v~L~C~ 139 (222)
T 3sbw_C 61 HSSYRQRARLLKDQLSLGNAALQITDVKLQDAGVYRCMISY-GGADYKRITVKVNAPYNKINQRILVVDPVTSEHELTCQ 139 (222)
T ss_dssp CGGGSSSEEECHHHHTTTEEEEEESSCCGGGCEEEEEEEES-SSEEEEEEEEEEEBCCCCCEEEEEEEETTTTEEEEEEE
T ss_pred cccccCceEEccccccCCEEEEEEcCcccccCeEEEEEEEe-CCCceeEEEEEEECCCCCCCceeeeeecCCCcEEEEEE
Confidence 12333321 22456999999999999999999998 555444443332211 1124568999999999
Q ss_pred EEccCCCCCceecccccccceE----EE-EEecceeeE---EEccCCCCCceEEEEEEEecCCCcceeEEEEEecCCC
Q psy7039 250 AVNAAGTEKPKISLDALIGKRI----KE-FVTSTTASL---NIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPG 319 (516)
Q Consensus 250 ~~~~~g~p~p~i~W~~~~~~~~----~~-~~~~~~~~l---~i~~l~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~ 319 (516)
+ .|.|.|.+.|.+..+... .. ......+.+ .+..+...|.|.|+|.|.|..|.....+.|.|...|.
T Consensus 140 ~---~g~P~p~i~W~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~d~g~Y~C~a~n~~g~~~~~~~l~v~~~p~ 214 (222)
T 3sbw_C 140 A---EGYPKAEVIWTSSDHQVLSGKTTTTNSKREEKLFNVTSTLRINTTTNEIFYCTFRRLDPEENHTAELVIPELPL 214 (222)
T ss_dssp E---EEBSCCEEEEEETTCCEECCEEEEEECC----CEEEEEEEEEECCTTCEEEEEEEETTTTEEEEEEEECCCC--
T ss_pred e---cCCCCCeEEEEECCCceecCccceEEEcCCCCCEEEEEEEEEeccCCcEEEEEEEeCccceeeEEEEEecCCcc
Confidence 8 678999999976422211 11 111112222 2234567899999999999999998888888876553
|
| >2db8_A Tripartite motif protein 9, isoform 2; ring finger protein 91, TRIM9, KIAA0282, RNF91, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.16 E-value=1.2e-10 Score=93.19 Aligned_cols=88 Identities=33% Similarity=0.522 Sum_probs=69.8
Q ss_pred CCCCCCC-cceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCC-CeEEeEEeecCCcEEEeCCCcCCCeEEEEEE
Q psy7039 11 FDEPGKP-TDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTG-NWEKAVVVPAGETSCTVPGLIEGETYQFQVR 88 (516)
Q Consensus 11 ~~~p~~p-~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~-~~~~~~~~~~~~~~~~i~~l~~~~~y~~~~~ 88 (516)
..+|.+| .++.+..+++++|.|+|.+|. +++++|.+|.|+|+..+. .|..+.. ...++++|.+|+++..|.|+|+
T Consensus 7 ~~~P~~P~~~~~~~~~~~~sv~l~W~~p~-~~~~~i~~Y~v~~~~~~~~~~~~~~~--~~~~~~~v~~L~p~t~Y~frV~ 83 (110)
T 2db8_A 7 GPVPATPILQLEECCTHNNSATLSWKQPP-LSTVPADGYILELDDGNGGQFREVYV--GKETMCTVDGLHFNSTYNARVK 83 (110)
T ss_dssp CCCCCCCBCCCCCCSCSSSEEEECCBCCT-TCCSCCSEEEEEECCSSSSCCEEEEE--ESCSCEEEECCCSSSCCEEEEE
T ss_pred CCCCCCccccceeeccCCCEEEEEECCCC-CCCCCccEEEEEEEeCCCCceEEEEe--CCcCEEEECCCCCCCEEEEEEE
Confidence 3445544 455555568899999999986 444789999999988654 7876543 3678999999999999999999
Q ss_pred EecCCCCCCCCCC
Q psy7039 89 AVNAAGPGEASKP 101 (516)
Q Consensus 89 a~n~~g~~~~s~~ 101 (516)
|.|..|.+.++..
T Consensus 84 A~n~~G~s~~S~~ 96 (110)
T 2db8_A 84 AFNKTGVSPYSKT 96 (110)
T ss_dssp EECSSCBCCCCSC
T ss_pred EEeCCcCCCCCCC
Confidence 9999998887654
|
| >2q7n_A Leukemia inhibitory factor receptor; cytokine cell surface receptor complex LIFR LIF, cytokine RE cytokine complex; HET: NAG FUC MAN; 4.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.15 E-value=1.6e-08 Score=102.45 Aligned_cols=120 Identities=17% Similarity=0.129 Sum_probs=93.2
Q ss_pred cccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEE
Q psy7039 362 IRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSAS 441 (516)
Q Consensus 362 ~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s 441 (516)
+.+..+..|++++|.|.+. .+.|.|.+++..+... ...+....|+|.++.. .|.|.|.|.+.+ +.....
T Consensus 210 P~~~~v~~Gs~vtl~C~a~---~~~I~W~~ng~~i~~~-----ri~~~~~~L~I~nl~~-sd~g~y~~~C~~--~~~i~~ 278 (488)
T 2q7n_A 210 PQDKVVLAGSNMTICCMSP---TKVLSGQIGNTLRPLI-----HLYGQTVAIHILNIPV-SENSGTNIIFIT--DDDVYG 278 (488)
T ss_dssp CTTCEEESSCCCEEEECCS---SCEEEEEETTEECCCE-----ECSSSCEEEECCSCCC-CCSSCEEEEEEE--SSCEEE
T ss_pred CCCCEEcCCCCEEEEEECC---CCEEEEEECCEECchh-----hccceEEEEEEeCCCc-ccCCcEEEEEEc--CCeEEE
Confidence 3445688999999999998 4689999999877533 1345567899999999 888888887763 233447
Q ss_pred EEEEEecCCCCCCCCcccccccCCeEEEEeeCCCCC--CCCCcceEEEEEEecC
Q psy7039 442 CKVYVVDKPSPPQGPLDVSDITPESCSLSWKPPLDD--GGSPITNYVVEKYESA 493 (516)
Q Consensus 442 ~~l~v~~~p~~P~~~l~~~~~~~~~~~l~W~~p~~~--~~~~i~~Y~v~~~~~~ 493 (516)
+.+.+..+|.+| .++........+++++|+++.+. +|.++.+|.|+|+..+
T Consensus 279 ~~l~v~~pP~~P-~nl~C~~~~~~svtcsW~pg~~~~l~G~~~t~Y~L~y~~~g 331 (488)
T 2q7n_A 279 TVVFAGYPPDVP-QKLSCETHDLKEIICSWNPGRITGLVGPRNTEYTLFESISG 331 (488)
T ss_dssp EEEEEECCCCCC-CSCEEEBSSSSEEEEEECCCSCCCCCTTSSCEEEEEETTTC
T ss_pred EEEEeeCCCCCC-cccEEEEcCCCEEEEEEeCCCcCCCCCCCceeEEEEEEECC
Confidence 788888899998 78887777789999999987644 2357899999997653
|
| >2xqy_G A13-D6.3 monoclonal antibody, envelope glycoprotein H; immune system-viral protein complex, envelope protein; HET: NAG; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.15 E-value=3e-10 Score=106.32 Aligned_cols=164 Identities=16% Similarity=0.096 Sum_probs=100.7
Q ss_pred cccCCceEEEEEEEEccCCCC--Cceecccccc-c-----------------------ceEEEEEe--cceeeEEEccCC
Q psy7039 237 NVHEGKAYEYRVSAVNAAGTE--KPKISLDALI-G-----------------------KRIKEFVT--STTASLNIKNSV 288 (516)
Q Consensus 237 ~l~~g~~~~~~~~~~~~~g~p--~p~i~W~~~~-~-----------------------~~~~~~~~--~~~~~l~i~~l~ 288 (516)
.+.+|+.+.|.|.+ .|.+ .+.+.|.+.. + .++.+... .....|.|.+++
T Consensus 17 ~v~~G~~v~L~C~~---~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~ 93 (261)
T 2xqy_G 17 LVKPGASVKMSCKA---SGYSFTSYWMNWVKQRPGRGLEWIGRIDPSDNETHYNQDFKDKVTLTVDKSSSTVYIQLSSLT 93 (261)
T ss_dssp EECTTCCEEEEEEE---ESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECSCC
T ss_pred EEcCCCCEEEEEEe---CCcccCCceEEEEEeCCCCCcEEEEEEecCCCceeeCCccCCcEEEEecCCCCEEEEEEcCCC
Confidence 46789999999988 4444 5778885421 1 12222221 245689999999
Q ss_pred CCCceEEEEEEEecCCC---cceeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccE
Q psy7039 289 RKDSGIYKIEAKNDYGI---DMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDM 365 (516)
Q Consensus 289 ~~d~g~y~c~a~n~~g~---~~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~ 365 (516)
.+|+|.|.|.+.|..+. ......|.|...+.. .|.. . + . ....
T Consensus 94 ~~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~--~P~v-~--------~--~---------------------~p~~ 139 (261)
T 2xqy_G 94 SEDSAVYYCGRLGYVYGFDYWGQGTTLTVSSAKTT--APSV-Y--------P--L---------------------APVC 139 (261)
T ss_dssp GGGCEEEEEEEECTTSSEEEECCCEEEEECSSCCB--CCEE-E--------E--E---------------------CCCC
T ss_pred cccCeEEEEEEecCCCcceEECCCEEEEEccCCCC--CCeE-E--------E--e---------------------CCCc
Confidence 99999999999986431 112346666542211 1100 0 0 0 0011
Q ss_pred EEEcCCeEEEEEEEeee-cCC-ceEEEECCeecCCCCceEEEEcC---CeEEEEEcCceecCCceEEEEEEEcCCCcee
Q psy7039 366 TVLAGEEFTITVPFSGR-PKP-TPIWTVNGDEVSPDGRIKFETSE---NQTIYRNKSAKRATDSGSYTIQLVNTVGSDS 439 (516)
Q Consensus 366 ~v~~g~~~~l~C~~~g~-p~~-~i~W~~~~~~l~~~~~~~~~~~~---~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s 439 (516)
.+..|+.+.|.|.+.+. |.+ .|.|++++..+...........+ ..+.|.|..... ++ |.|+|.|.|......
T Consensus 140 ~v~~g~~v~L~C~~~g~~P~~i~v~W~k~g~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~-~~-g~YtC~v~n~~~~~~ 216 (261)
T 2xqy_G 140 GDTTGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTW-PS-QSITCNVAHPASSTK 216 (261)
T ss_dssp C--CCSEEEEEEEEEEEBSSCCEEEEGGGTCCTTEEECCCEEETTEEEEEEEEEEETTTT-TT-SCCEEEEEEGGGTEE
T ss_pred cccCCCcEEEEEEEEeEeCCCCEEEEecCCCcCceEecCceecCCcEEEEEEEEEecccc-CC-CEEEEEEEECCCCcc
Confidence 24679999999999885 666 99999998754211000011111 124689988887 78 999999999765533
|
| >2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.14 E-value=3.7e-10 Score=91.42 Aligned_cols=90 Identities=20% Similarity=0.283 Sum_probs=74.6
Q ss_pred CCCccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeecc-CCceEEe
Q psy7039 112 LAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQI-GGRADVQ 190 (516)
Q Consensus 112 ~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~-~~~~~~~ 190 (516)
.+|.|. ..+..+.+.+|+.+.|.|.+. |.|.+.+.|++++..+.. ..++.+.
T Consensus 14 ~~p~f~-~~p~~~~v~~G~~v~L~C~~~--------------------------g~p~p~v~W~k~~~~~~~~~~~~~~~ 66 (116)
T 2kkq_A 14 RAPMFI-YKPQSKKVLEGDSVKLECQIS--------------------------AIPPPKLFWKRNNEMVQFNTDRISLY 66 (116)
T ss_dssp BCCCBS-SCCCCEEEETTEEEEEEEEBC--------------------------CBSCCEEEEEETTEECCCCBTTEEEE
T ss_pred CCCeEE-eCCCcEEEeCCCcEEEEEEEe--------------------------ccCCCEEEEEECCEECcCCCCeEEEE
Confidence 467776 777889999999999999999 999999999999998874 4666665
Q ss_pred ecC-CeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEEe
Q psy7039 191 TTK-SETVLDIPFCSRSDTGHYSLTLENNLGTATASAHV 228 (516)
Q Consensus 191 ~~~-~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~ 228 (516)
..+ ...+|.|.+++.+|+|.|+|.+.|..|.......+
T Consensus 67 ~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l 105 (116)
T 2kkq_A 67 QDNTGRVTLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRL 105 (116)
T ss_dssp ECTTCEEEEEEEEECGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred eCCCCeEEEEECCCCcccCEEEEEEEEcCCCeEEEEEEE
Confidence 443 34589999999999999999999998876655443
|
| >3k2m_C Monobody HA4; engineered binding protein, antibody mimic, protein-protein SH2 domain, ATP-binding, phosphoprotein; 1.75A {Homo sapiens} PDB: 3uyo_D 1ttf_A 1ttg_A 3rzw_A 1fna_A | Back alignment and structure |
|---|
Probab=99.14 E-value=3.4e-10 Score=89.07 Aligned_cols=81 Identities=22% Similarity=0.377 Sum_probs=67.8
Q ss_pred CCCCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCC-CeEEeEEeecCCcEEEeCCCcCCCeEEEEEEEec
Q psy7039 13 EPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTG-NWEKAVVVPAGETSCTVPGLIEGETYQFQVRAVN 91 (516)
Q Consensus 13 ~p~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~-~~~~~~~~~~~~~~~~i~~l~~~~~y~~~~~a~n 91 (516)
.|++|.+|++..++++++.|+|.+|. + ++.+.+|+|+|...++ .+......+...++++|.+|+|++.|.|+++|.+
T Consensus 4 ~~~~P~~l~v~~~t~~Sv~l~W~~p~-~-~~~i~~Y~v~y~~~~~~~~~~~~~v~~~~t~~~l~~L~p~t~Y~~~V~A~~ 81 (101)
T 3k2m_C 4 VSSVPTKLEVVAATPTSLLISWDAPM-S-SSSVYYYRITYGETGGNSPVQEFTVPYSSSTATISGLSPGVDYTITVYAWG 81 (101)
T ss_dssp EEBSSCEEEEEEEETTEEEEEECCCC-T-TSCCCEEEEEEEETTCSSCCEEEEEETTCCEEEECSCCTTCEEEEEEEEEE
T ss_pred CCCCCcceEEeecCCCEEEEEecCCC-C-CCceeeEEEEEEECCCCCccEEEEcCCCccEEEECCCCCCCEEEEEEEEEe
Confidence 47899999999999999999999985 3 3579999999998654 2222334566789999999999999999999999
Q ss_pred CCCC
Q psy7039 92 AAGP 95 (516)
Q Consensus 92 ~~g~ 95 (516)
..|.
T Consensus 82 ~~~~ 85 (101)
T 3k2m_C 82 EDSA 85 (101)
T ss_dssp ECTT
T ss_pred CCcc
Confidence 8877
|
| >1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3 | Back alignment and structure |
|---|
Probab=99.14 E-value=9.3e-11 Score=102.72 Aligned_cols=112 Identities=5% Similarity=-0.006 Sum_probs=81.2
Q ss_pred CcEEEeCCCcCCCeEEEEEEEecCCCCCCCCCCCcceEeccCCCCCccccCcccceEEecCCeEEEEEeeeeccccccCc
Q psy7039 69 ETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSP 148 (516)
Q Consensus 69 ~~~~~i~~l~~~~~y~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~ 148 (516)
+.+|.|.+++..|.|.|+|.|.|..|.... .....+.+......|.+. ..+..+.|.|.+.
T Consensus 60 ~gsL~I~~v~~~D~G~Y~C~~~n~~g~~~~-~~~~~l~V~~~~~~p~i~---------~~~~~v~L~C~~~--------- 120 (176)
T 1hng_A 60 NGDLKIKNLTRDDSGTYNVTVYSTNGTRIL-NKALDLRILEMVSKPMIY---------WECSNATLTCEVL--------- 120 (176)
T ss_dssp TSCEEESSCCGGGCEEEEEEEEETTCCEEE-EEEEEEEEECCCCCCEEE---------EETTTTEEEEECS---------
T ss_pred CCcEEEcccccccCEEEEEEEEeCCCCEEE-EEEEEEEEeCCCCCCEEE---------ecCCcEEEEEEec---------
Confidence 446999999999999999999998765311 112223333332334332 2345699999999
Q ss_pred cccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEE
Q psy7039 149 LRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAH 227 (516)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~ 227 (516)
+.|.+.+.|++++..+....+ +.|.++..+|+|.|+|.+.|..|.......
T Consensus 121 -----------------g~p~p~i~W~~~g~~l~~~~~-----------~~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~ 171 (176)
T 1hng_A 121 -----------------EGTDVELKLYQGKEHLRSLRQ-----------KTMSYQWTNLRAPFKCKAVNRVSQESEMEV 171 (176)
T ss_dssp -----------------SCSSCEEEEEETTEEEEEESS-----------SEEEEECSCCSSCEEEEEEETTEEEEEEEC
T ss_pred -----------------CCCCcEEEEEECCEECCCCCc-----------EEEEEEEccCCeEEEEEEEecCCCceeccc
Confidence 899999999999988764433 344577899999999999999988766543
|
| >1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A | Back alignment and structure |
|---|
Probab=99.13 E-value=5.8e-10 Score=95.26 Aligned_cols=90 Identities=20% Similarity=0.363 Sum_probs=77.1
Q ss_pred cccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEEEEc-CCeEEEEEcCceecCCceEEEEEEEcCCCceeE
Q psy7039 362 IRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETS-ENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSA 440 (516)
Q Consensus 362 ~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~-~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~ 440 (516)
+..+.+..|+.+.|.|.+.|.|.+.+.|++++..+....++.+... .+...|.|.++.. .|.|.|+|.|.|..|....
T Consensus 48 ~~~~~v~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~~~~~~L~I~~v~~-~D~G~Y~C~a~N~~G~~~~ 126 (154)
T 1fhg_A 48 ILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCG-DDDAKYTCKAVNSLGEATC 126 (154)
T ss_dssp CCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCSSSEEEEECTTCEEEEEESSCCG-GGCEEEEEEEEETTEEEEE
T ss_pred CCcEEEeCCCeEEEEEEEEEecCCEEEEEECCEECCCCCcEEEEECCCCeEEEEECCCCh-hcCEEEEEEEEECCCeEEE
Confidence 3557889999999999999999999999999999887777777653 3457899999999 9999999999999999999
Q ss_pred EEEEEEecCCCC
Q psy7039 441 SCKVYVVDKPSP 452 (516)
Q Consensus 441 s~~l~v~~~p~~ 452 (516)
.+.|.|..+|..
T Consensus 127 ~~~l~V~~~p~~ 138 (154)
T 1fhg_A 127 TAELLVETMGKE 138 (154)
T ss_dssp EEEEEEECC---
T ss_pred EEEEEEeCcCcC
Confidence 999999876643
|
| >2edd_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.13 E-value=5.2e-10 Score=91.46 Aligned_cols=88 Identities=18% Similarity=0.212 Sum_probs=70.2
Q ss_pred CCCCCCCCcceEEEeeeCCeeEEEecCCCCCCCCcee----ceEEEEEeCCC---CeEEeEEeecCCcEEEeCCCcCCCe
Q psy7039 10 PFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPIT----GYVVEMKDKTG---NWEKAVVVPAGETSCTVPGLIEGET 82 (516)
Q Consensus 10 ~~~~p~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~----~Y~v~~~~~~~---~~~~~~~~~~~~~~~~i~~l~~~~~ 82 (516)
...+|.+|.+|++..+++++|.|+|.+|...+ ..|. +|+|+|+..+. .|.. .....++++|.+|++++.
T Consensus 15 ~~~pp~~P~~l~~~~~s~tsi~lsW~~p~~~~-~~i~~~~~~Y~v~y~~~~~~~~~~~~---~~~~~~~~~v~gL~P~T~ 90 (123)
T 2edd_A 15 LSTPMLPPVGVQAVALTHDAVRVSWADNSVPK-NQKTSEVRLYTVRWRTSFSASAKYKS---EDTTSLSYTATGLKPNTM 90 (123)
T ss_dssp CCCSSCCCEEEEEEEEETTEEEEEEECSSSCS-SCCCSCCCCEEEEEEETTCTTCCCCC---EEESSSEEEEESCCTTCE
T ss_pred cCCCCCCCcceEEEEcCCCeEEEEecCCCCCc-ccccCcCceEEEEEEECCCCCccEEE---EeCCceEEEecCCCCCCE
Confidence 45788999999999999999999999875333 3344 99999988632 3322 223588999999999999
Q ss_pred EEEEEEEecCCCCCCCCCC
Q psy7039 83 YQFQVRAVNAAGPGEASKP 101 (516)
Q Consensus 83 y~~~~~a~n~~g~~~~s~~ 101 (516)
|.|+|+|.|..|.+.++..
T Consensus 91 Y~f~V~A~n~~g~g~~S~~ 109 (123)
T 2edd_A 91 YEFSVMVTKNRRSSTWSMT 109 (123)
T ss_dssp EEEEEEECCSSSCCCCCCC
T ss_pred EEEEEEEeCCCcccCCCCC
Confidence 9999999999998887654
|
| >3qwq_B Adnectin; cell surface receptor, tyrosine kinase, glycoprotein, adnect antitumor, drug, engineered binding protein; HET: NAG BMA MAN FUC; 2.75A {Homo sapiens} PDB: 3qwr_D* | Back alignment and structure |
|---|
Probab=99.13 E-value=2.1e-10 Score=92.30 Aligned_cols=80 Identities=23% Similarity=0.328 Sum_probs=65.8
Q ss_pred CCCCCCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCCC-eEEeEEeecCCcEEEeCCCcCCCeEEEEEEE
Q psy7039 11 FDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGN-WEKAVVVPAGETSCTVPGLIEGETYQFQVRA 89 (516)
Q Consensus 11 ~~~p~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~~-~~~~~~~~~~~~~~~i~~l~~~~~y~~~~~a 89 (516)
.+.|++|.+|++.+++++++.|+|.+|. +.|.+|+|.|...++. +..........++++|.+|++++.|.|+++|
T Consensus 1 ~GvP~~P~~L~v~~~t~~Sv~lsW~~p~----g~i~~Y~v~y~~~~~~~~~~~~~v~~~~ts~~l~gL~P~T~Y~v~V~A 76 (114)
T 3qwq_B 1 MGVSDVPRDLEVVAATPTSLLISWDSGR----GSYQYYRITYGETGGNSPVQEFTVPGPVHTATISGLKPGVDYTITVYA 76 (114)
T ss_dssp ----CCCEEEEEEEEETTEEEEEEECCS----CCCSEEEEEEEESSCSSCCEEEEEETTCCEEEECSCCTTCEEEEEEEE
T ss_pred CCCCCCCCceEEEecCCCEEEEEEcCCc----CcccEEEEEEEECCCCCccEEEEeCCCcCEEEeCCCCCCCEEEEEEEE
Confidence 3689999999999999999999999973 4689999999986653 3333456677899999999999999999999
Q ss_pred ecCCC
Q psy7039 90 VNAAG 94 (516)
Q Consensus 90 ~n~~g 94 (516)
.+..|
T Consensus 77 ~~~~G 81 (114)
T 3qwq_B 77 VTDHK 81 (114)
T ss_dssp EEEEE
T ss_pred EECCc
Confidence 99887
|
| >2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.13 E-value=1.8e-10 Score=91.14 Aligned_cols=83 Identities=20% Similarity=0.268 Sum_probs=73.9
Q ss_pred EEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEE
Q psy7039 365 MTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKV 444 (516)
Q Consensus 365 ~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l 444 (516)
+.+..|+.+.|.|.+.+.|.+ +.|++++..+....++.+...+....|.|.++.. .|+|.|+|.|.|..+ .+.|
T Consensus 20 ~~v~~G~~v~l~C~~~~~p~~-v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~~~~-~D~G~Y~C~a~n~~~----~~~l 93 (104)
T 2e6p_A 20 LTFTTSERVVLTCELSRVDFP-ATWYKDGQKVEESELLVVKMDGRKHRLILPEAKV-QDSGEFECRTEGVSA----FFGV 93 (104)
T ss_dssp EEEESSSCEECCEECSSTTCC-CEEEETTEECCCBTTBEEEEETTEEEEEESSCCT-TTCEEEEEECSSCCC----CEEE
T ss_pred EEEeCCCcEEEEEEecCCCCc-cEEeeCCEECCCCCCEEEEeCCCEEEEEECCCCh-hhCEEEEEEECCceE----EEEE
Confidence 678999999999999999998 9999999998888888888777778999999999 999999999999743 6788
Q ss_pred EEecCCCCC
Q psy7039 445 YVVDKPSPP 453 (516)
Q Consensus 445 ~v~~~p~~P 453 (516)
.|..+|.+|
T Consensus 94 ~V~~~P~pp 102 (104)
T 2e6p_A 94 TVQDPSGPS 102 (104)
T ss_dssp EEECCCCSS
T ss_pred EEcCCCCCc
Confidence 888888776
|
| >3o3u_N Maltose-binding periplasmic protein, advanced Gly END product-specific receptor; RAGE, AGER, scavenger receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3s59_A 3s58_A 3cjj_A 2l7u_A* 2e5e_A | Back alignment and structure |
|---|
Probab=99.13 E-value=9.9e-11 Score=122.96 Aligned_cols=160 Identities=16% Similarity=0.225 Sum_probs=110.8
Q ss_pred ccccCCceEEEEEEEEccCCCCCceeccccccc-----------------ceEEEEEecceeeEEEccCCCCCceEEEEE
Q psy7039 236 NNVHEGKAYEYRVSAVNAAGTEKPKISLDALIG-----------------KRIKEFVTSTTASLNIKNSVRKDSGIYKIE 298 (516)
Q Consensus 236 ~~l~~g~~~~~~~~~~~~~g~p~p~i~W~~~~~-----------------~~~~~~~~~~~~~l~i~~l~~~d~g~y~c~ 298 (516)
..+..|+.+.+.|.+. .|.|.+.+.|.+... .+.. ....+.|.|.+++.+|+|.|+|.
T Consensus 376 ~~~~~G~~v~L~C~~~--~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~r~~---~~~~~~L~i~~v~~~D~G~Y~C~ 450 (581)
T 3o3u_N 376 ITARIGEPLVLKCKGA--PKKPPQRLEWKLNTGRTEAWKVLSPQGGGPWDSVAR---VLPNGSLFLPAVGIQDEGIFRCQ 450 (581)
T ss_dssp EEEETTSCEEECCTTC--CSSSSCEEEEEEEETTSSSCEECCSCCSSGGGGTSE---ECTTSCEEESSCCGGGCEEEEEE
T ss_pred cceecCCcEEEeeeec--CCCCCceEEEEEcCCeeEEEEecccCCCCCcCCcEE---EcCCceEEEeccccccCeEEEEE
Confidence 4567899999999752 467889999965321 1111 12345899999999999999999
Q ss_pred EEecCCCc-ceeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCe-EEEE
Q psy7039 299 AKNDYGID-MADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEE-FTIT 376 (516)
Q Consensus 299 a~n~~g~~-~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~-~~l~ 376 (516)
+.|..|.. ...+.|.|...|..|.. ......+..+.. +.|.
T Consensus 451 ~~n~~~~~~~~~~~l~V~~~~~~p~i-------------------------------------~~~~~~~~~~~~~~~l~ 493 (581)
T 3o3u_N 451 AMNRNGKETKSNYRVRVYQIPGKPEI-------------------------------------VDSASELTAGVPNKVGT 493 (581)
T ss_dssp EECTTSCEEEEEEEEEEEBCCCCCEE-------------------------------------ESCCSEECTTSCEEEEE
T ss_pred EEcCCCceeEEEEEEEEEcCCCCCEE-------------------------------------EcCCcccccCCceeEEE
Confidence 99998887 67788888776654321 001112444544 4669
Q ss_pred EEEee-ecCCceEEEECCeecCCC-CceEEEE------cCC----eEEEEEcCceecCCceEEEEEEEcCCCc
Q psy7039 377 VPFSG-RPKPTPIWTVNGDEVSPD-GRIKFET------SEN----QTIYRNKSAKRATDSGSYTIQLVNTVGS 437 (516)
Q Consensus 377 C~~~g-~p~~~i~W~~~~~~l~~~-~~~~~~~------~~~----~~~l~i~~~~~~~~~g~y~c~a~n~~G~ 437 (516)
|.+.+ .|.+.+.|++++..+... ..+.+.. ..+ .+.|.|..+...++.+.|+|.|.|..+.
T Consensus 494 C~~~~~~P~~~i~W~~~g~~l~~~~~~~~~~~~~~~~~~~g~y~~~s~L~i~~~~~~d~~~~y~C~~~n~~~~ 566 (581)
T 3o3u_N 494 CVSEGSYPAGTLSWHLDGKPLVPNEKGVSVKEQTRRHPETGLFTLQSELMVTPARGGDPRPTFSCSFSPGLPR 566 (581)
T ss_dssp EEEEEEBSCCEEEEEETTEECCTTSTTEEEEEEEEECTTTCCEEEEEEEEECCCTTSCSCCCEEEEEECSSCS
T ss_pred EECCCCCCCCeEEEEECCEECCCCCCeEEEEeeeEEcCCCceEEEEEEEEEEeccccCCCceEEEEEeccCCC
Confidence 99988 599999999999988543 2332211 011 2568999888416689999999999754
|
| >3lb6_C IL-13, interleukin-13 receptor subunit alpha-2; cytokine, decoy, decoy receptor, glycoprotein; HET: MLY NAG; 3.05A {Homo sapiens} PDB: 3lb6_D* | Back alignment and structure |
|---|
Probab=99.13 E-value=1.9e-09 Score=106.46 Aligned_cols=94 Identities=17% Similarity=0.207 Sum_probs=66.5
Q ss_pred CCCCCCCcceEEEeee-CCeeEEEecCCCC-C-CCCceeceEEEEEeCCC-CeEEeEEeecCCcEEEeCCCcCCCeEEEE
Q psy7039 11 FDEPGKPTDLEATDWD-KDHVDLQWTPPIS-D-GGSPITGYVVEMKDKTG-NWEKAVVVPAGETSCTVPGLIEGETYQFQ 86 (516)
Q Consensus 11 ~~~p~~p~~l~~~~~~-~~~v~l~W~~p~~-~-~~~~i~~Y~v~~~~~~~-~~~~~~~~~~~~~~~~i~~l~~~~~y~~~ 86 (516)
...|+||.+|++.+.+ .+++.|+|++|.. + .+..+..|+|+|+..+. .|...... ... ....+.....|.|+
T Consensus 29 ~v~~~pP~nl~v~~~~~~~~v~LsW~p~~~~~~~~~~~~~Y~v~~~~~~~~~w~~~~~~--~~~--~~~~~~l~~~y~~r 104 (380)
T 3lb6_C 29 EIKVNPPQDFEIVDPGYLGYLYLQWQPPLSLDHFKECTVEYELKYRNIGSETWKTIITK--NLH--YKDGFDLNKGIEAX 104 (380)
T ss_dssp --CCCCCEEEEEECCSSSSEEEEEEECCCC------CCCEEEEEEEETTCSSCEEEEES--SSE--EEEECCTTSCEEEE
T ss_pred cccCCcCCceEEEecCcCceEEEEECCCCCccccccceEEEEEEECCCCCCcceEEEec--cEE--EEEeecCCCceEEE
Confidence 3458999999999776 6889999999864 2 22458999999999764 79877654 222 33345558999999
Q ss_pred EEEecC----CCCCCCCCCCcceEec
Q psy7039 87 VRAVNA----AGPGEASKPTAPIVAK 108 (516)
Q Consensus 87 ~~a~n~----~g~~~~s~~~~~~~~~ 108 (516)
|+|.|. .|.+.++..+..++..
T Consensus 105 V~a~~~~~~~~g~g~~S~~s~~~~~~ 130 (380)
T 3lb6_C 105 IHTLLPWQCTNGSEVQSSWAETTYWI 130 (380)
T ss_dssp EEEECCHHHHSSSCCBCCCEEEEECC
T ss_pred EEeecCCcccCCccCccccchhhccc
Confidence 999975 6777776655555543
|
| >2rb8_A Tenascin; beta sheet,loop design, alternative splicing, cell adhesion, coiled coil, EGF-like domain, extracellular matrix, glycoprotein; 1.45A {Homo sapiens} PDB: 2rbl_A 1ten_A | Back alignment and structure |
|---|
Probab=99.12 E-value=3.1e-10 Score=89.80 Aligned_cols=81 Identities=16% Similarity=0.365 Sum_probs=68.5
Q ss_pred CCCCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCC--CCeEEeEEeecCCcEEEeCCCcCCCeEEEEEEEe
Q psy7039 13 EPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKT--GNWEKAVVVPAGETSCTVPGLIEGETYQFQVRAV 90 (516)
Q Consensus 13 ~p~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~--~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~~~a~ 90 (516)
.|++|.+|++..++.+++.|+|.+|. +.|.+|.|.|...+ +.|.. .......++++|.+|++++.|.|+|.|.
T Consensus 2 ~p~~P~~l~v~~~t~~sv~lsW~~p~----~~i~~Y~v~y~~~~~~~~~~~-~~v~~~~~~~~l~~L~p~t~Y~~~V~A~ 76 (104)
T 2rb8_A 2 RLDAPSQIEVKDVTDTTALITWMPPS----QPVDGFELTYGIKDVPGDRTT-IDLTEDENQYSIGNLKPDTEYEVSLISR 76 (104)
T ss_dssp CCCCCEEEEEESCCSSCEEEEEECCS----SCCSEEEEEEEETTCTTCCEE-EEEETTCCEEEECSCCTTCEEEEEEEEE
T ss_pred CCCCCCccEEEEecCCeEEEEEcCCC----CccceEEEEEEECcCCCceEE-EEcCCCcCEEEeCCCCCCCEEEEEEEEE
Confidence 58999999999999999999999974 56899999998754 24443 3456778999999999999999999999
Q ss_pred cCCCCCCC
Q psy7039 91 NAAGPGEA 98 (516)
Q Consensus 91 n~~g~~~~ 98 (516)
|..|.+.+
T Consensus 77 ~~~g~s~p 84 (104)
T 2rb8_A 77 RGDMSSNP 84 (104)
T ss_dssp ETTEECCC
T ss_pred eCCccCCC
Confidence 98887754
|
| >2ocf_D Fibronectin; estrogen receptor, LBD, monobody, estradiol, hormone-growth complex; HET: CME EST; 2.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.12 E-value=1.7e-10 Score=93.99 Aligned_cols=86 Identities=22% Similarity=0.319 Sum_probs=69.4
Q ss_pred CCCCCCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCC-CeEEeEEeecCCcEEEeCCCcCCCeEEEEEEE
Q psy7039 11 FDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTG-NWEKAVVVPAGETSCTVPGLIEGETYQFQVRA 89 (516)
Q Consensus 11 ~~~p~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~-~~~~~~~~~~~~~~~~i~~l~~~~~y~~~~~a 89 (516)
..+|++|.+|++..+++++|.|+|.+|. ..|.+|+|.|...++ .+..........++++|.+|++++.|.|+|.|
T Consensus 26 ~tp~~~P~~l~v~~~t~~Si~lsW~~p~----~~i~~Y~V~y~~~~~~~~~~~~~v~~~~t~~~l~gL~P~t~Y~~~V~A 101 (121)
T 2ocf_D 26 GSVSDVPTKLEVVAATPTSLLISWDAPA----VTVRYYRITYGETGGNSPVQEFTVPGSKSTATISGLKPGVDYTITVYA 101 (121)
T ss_dssp ---CCSCEEEEEEEECSSCEEEEEECCS----SCCCEEEEEEEETTTCSCBEEEEEETTCCEEEECCCCTTCEEEEEEEE
T ss_pred cCCCCCCCccEEEecCCCEEEEEEcCCC----CCCcEEEEEEEECCCCCccEEEEeCCCcCEEEeCCCCCCCEEEEEEEE
Confidence 4567999999999999999999999974 248999999998665 33333345567899999999999999999999
Q ss_pred ecCCCCCCCCC
Q psy7039 90 VNAAGPGEASK 100 (516)
Q Consensus 90 ~n~~g~~~~s~ 100 (516)
.|..|.+.++.
T Consensus 102 ~~~~G~g~~Ss 112 (121)
T 2ocf_D 102 VTGLRLMLAGS 112 (121)
T ss_dssp ECCHHHHHHSC
T ss_pred EeCCCccCCCC
Confidence 99988766543
|
| >2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.12 E-value=2e-10 Score=90.76 Aligned_cols=87 Identities=17% Similarity=0.300 Sum_probs=76.2
Q ss_pred ccccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeE
Q psy7039 361 SIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSA 440 (516)
Q Consensus 361 ~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~ 440 (516)
.+....+..|+.+.|.|.+.+ +.+.+.|++++..+..+.++.+...+....|.|.++.. .|+|.|+|.|.| ...
T Consensus 14 ~~~~~~v~~G~~v~l~C~~~~-~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~v~~-~D~G~Y~C~a~n----~~~ 87 (103)
T 2edf_A 14 PLEDQWVAPGEDVELRCELSR-AGTPVHWLKDRKAIRKSQKYDVVCEGTMAMLVIRGASL-KDAGEYTCEVEA----SKS 87 (103)
T ss_dssp CCCCEEECTTSCEEECCEESS-SSCCCCEEESSCBCCCSSSEEEEEETTEEEEEESSCCT-TTCSEEEEECSS----CEE
T ss_pred cCCccEEcCCCCEEEEEEEeC-CCCcEEEEECCEEccCCCCEEEEECCCEEEEEECCCCc-ccCEEEEEEEcc----CCc
Confidence 345678899999999999997 78899999999998878888888777788999999999 999999999999 467
Q ss_pred EEEEEEecCCCCC
Q psy7039 441 SCKVYVVDKPSPP 453 (516)
Q Consensus 441 s~~l~v~~~p~~P 453 (516)
++.|.|..+|.+|
T Consensus 88 ~~~l~V~~~p~~~ 100 (103)
T 2edf_A 88 TASLHVEEKASGP 100 (103)
T ss_dssp EEEEEECCCSSSS
T ss_pred EEEEEEeCCCCCC
Confidence 7889998887766
|
| >2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.12 E-value=1.5e-10 Score=91.75 Aligned_cols=78 Identities=18% Similarity=0.274 Sum_probs=68.0
Q ss_pred CCccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCc-eeeEEeeCCeeeccCCceEEee
Q psy7039 113 APRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPF-LNHGWSINGQVCQIGGRADVQT 191 (516)
Q Consensus 113 ~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~i~W~~~~~~~~~~~~~~~~~ 191 (516)
+|.|. ..+.++.+.+|+.+.|.|.+. +.|. +.+.|++++..+....++.+..
T Consensus 8 p~~~~-~~~~~~~v~~G~~v~l~C~v~--------------------------~~~~~~~v~W~k~g~~i~~~~r~~~~~ 60 (104)
T 2eny_A 8 HVGIT-KRLKTMEVLEGESCSFECVLS--------------------------HESASDPAMWTVGGKTVGSSSRFQATR 60 (104)
T ss_dssp CCCCS-BCCCCEEEESSCCEEEEEECS--------------------------SCCCSSCBCCBSSSSBCSBCSSCEEEE
T ss_pred CCEEE-ecCCCcEEcCCCcEEEEEEEc--------------------------CCCCCceeEEEECCEECCCCCCEEEEE
Confidence 44455 677889999999999999999 7764 4899999999998888888887
Q ss_pred cCCeeEEEeccCCCCCCeeEEEEEEc
Q psy7039 192 TKSETVLDIPFCSRSDTGHYSLTLEN 217 (516)
Q Consensus 192 ~~~~~~l~i~~~~~~d~g~Y~c~~~~ 217 (516)
.+...+|.|.+++.+|+|.|+|.+.|
T Consensus 61 ~~~~~~L~I~~v~~~D~G~Y~C~a~~ 86 (104)
T 2eny_A 61 QGRKYILVVREAAPSDAGEVVFSVRG 86 (104)
T ss_dssp ETTEEEEEECSCCTTTCSCEEEEETT
T ss_pred cCCEEEEEECCCCHHHCEEEEEEECC
Confidence 88888999999999999999999865
|
| >1qr4_A Protein (tenascin); fibronectin type-III, heparin, extracellular matrix, adhesion, fusion protein, structural protein; 2.55A {Gallus gallus} SCOP: b.1.2.1 b.1.2.1 | Back alignment and structure |
|---|
Probab=99.11 E-value=1.1e-09 Score=96.64 Aligned_cols=131 Identities=17% Similarity=0.278 Sum_probs=92.2
Q ss_pred CCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeeecCCceEEEECCeec
Q psy7039 317 KPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEV 396 (516)
Q Consensus 317 ~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l 396 (516)
.|.+|.. +.+..++.+++.|+|.+|.+ .+.+|. |.|...+
T Consensus 6 ~p~~P~~-l~~~~~~~~sv~l~W~~p~~----~i~~Y~--------------------------------v~~~~~~--- 45 (186)
T 1qr4_A 6 DLDNPKD-LEVSDPTETTLSLRWRRPVA----KFDRYR--------------------------------LTYVSPS--- 45 (186)
T ss_dssp --CCCEE-EEEESCCSSEEEEEEECCSS----CCSEEE--------------------------------EEEECTT---
T ss_pred CCcCCCc-eEEEecCCCEEEEEEeCCCC----CccEEE--------------------------------EEEEeCC---
Confidence 4444433 77888899999999998853 455551 1222111
Q ss_pred CCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEEEEecCCCCCCCCcccccccCCeEEEEeeCCCC
Q psy7039 397 SPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQGPLDVSDITPESCSLSWKPPLD 476 (516)
Q Consensus 397 ~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~v~~~p~~P~~~l~~~~~~~~~~~l~W~~p~~ 476 (516)
+.............+.|.+|.+ ...|.|++.|.|..|.. ....+.+...|.+| .++.+..++.+++.|+|++|.
T Consensus 46 --~~~~~~~~~~~~~~~~i~~L~p-~t~Y~~~V~a~~~~~~s-~~~~~~~~t~p~~P-~~l~~~~~~~~sv~l~W~~p~- 119 (186)
T 1qr4_A 46 --GKKNEMEIPVDSTSFILRGLDA-GTEYTISLVAEKGRHKS-KPTTIKGSTVVGSP-KGISFSDITENSATVSWTPPR- 119 (186)
T ss_dssp --CCEEEEEECTTCSEEEEESCCS-SCEEEEEEEEESSSCBC-CCEEEEEECCCCCC-SCEEEESCCSSCEEEEECCCS-
T ss_pred --CCeeEEECCCCCCEEEECCCCC-CCEEEEEEEEEcCCccC-CCEEEEEECCCCCC-CccEEEEeCCCEEEEEEECCC-
Confidence 0111122233445788999999 99999999999975543 34566777778888 799999999999999999874
Q ss_pred CCCCCcceEEEEEEecCCCc
Q psy7039 477 DGGSPITNYVVEKYESATGV 496 (516)
Q Consensus 477 ~~~~~i~~Y~v~~~~~~~~~ 496 (516)
+.+.+|.|+|+..+.+.
T Consensus 120 ---~~i~~Y~v~~~~~~~~~ 136 (186)
T 1qr4_A 120 ---SRVDSYRVSYVPITGGT 136 (186)
T ss_dssp ---SCCSEEEEEEEETTCCC
T ss_pred ---CcccEEEEEEEeCCCCC
Confidence 45999999999886544
|
| >2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin, glycosylation, immune system; HET: NAG FUC MAN GAL; 2.13A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.11 E-value=1.3e-10 Score=105.53 Aligned_cols=152 Identities=9% Similarity=0.026 Sum_probs=93.5
Q ss_pred EecCCeEEEEEeeeeccccccCccccccccccCccceeecCc---C-ceeeEEeeCCeeeccCCceEEe-ecC----Cee
Q psy7039 126 IKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSE---P-FLNHGWSINGQVCQIGGRADVQ-TTK----SET 196 (516)
Q Consensus 126 v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---p-~~~i~W~~~~~~~~~~~~~~~~-~~~----~~~ 196 (516)
+.+|+.+.|.|.+. +. | .+.|.|++++..+......... ..+ ...
T Consensus 23 v~~G~~v~L~C~~~--------------------------g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (218)
T 2rgs_A 23 LMISLTPKVTCVVV--------------------------DVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTIRVVS 76 (218)
T ss_dssp HCTTSCCEEEEEEE--------------------------EECTTSCCEEEEEEETTEEECCCEEEEEEETTTTEEEEEE
T ss_pred hccCCCeeEEEEEc--------------------------CCccCCCceEEEEEECCccccCcccccccccCCCeEEEEE
Confidence 67899999999998 65 3 4799999999776532211111 111 235
Q ss_pred EEEeccCCCCCCeeEEEEEEcCCCce--EEEEEe--ec---eeeee----ccccCCceEEEEEEEEccCC-CCCc-eecc
Q psy7039 197 VLDIPFCSRSDTGHYSLTLENNLGTA--TASAHV--TG---TEFTD----NNVHEGKAYEYRVSAVNAAG-TEKP-KISL 263 (516)
Q Consensus 197 ~l~i~~~~~~d~g~Y~c~~~~~~g~~--~~~~~~--~~---~~~~~----~~l~~g~~~~~~~~~~~~~g-~p~p-~i~W 263 (516)
.|.|.+++.+|+|.|+|.+.|..+.. ...+.. .. ..+.. ....+|....+.|.+ .| .|++ .++|
T Consensus 77 ~L~I~~~~~~D~g~Y~C~~~~~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~g~~~~L~C~~---~g~~P~~~~v~W 153 (218)
T 2rgs_A 77 TLPIQHQDWMSGKEFKCKVNNKDLPSPIERTISKIKGLVRAPQVYILPPPAEQLSRKDVSLTCLV---VGFNPGDISVEW 153 (218)
T ss_dssp EEECCHHHHHTTCCEEEEEEETTCSSCEEEEECCCCCCCBCCEEEEECCCGGGTTSSEEEEEEEE---EEEBSSCCEEEE
T ss_pred EEEEcHHHcCCCCeEEEEEECCcCCCcceEEEeecCCCCCCCEEEEECCChHHhcCCceEEEEEE---EeeeCCCcEEEE
Confidence 79999999999999999999987653 222211 10 11111 111258999999999 56 5665 8999
Q ss_pred cccccce---EEEE-Eecceee------EEEccCCCCCceEEEEEEEecCCCc
Q psy7039 264 DALIGKR---IKEF-VTSTTAS------LNIKNSVRKDSGIYKIEAKNDYGID 306 (516)
Q Consensus 264 ~~~~~~~---~~~~-~~~~~~~------l~i~~l~~~d~g~y~c~a~n~~g~~ 306 (516)
.+..... .... ....++. |.|......|.|.|+|.|.|.....
T Consensus 154 ~k~g~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~d~g~YtC~a~n~~l~~ 206 (218)
T 2rgs_A 154 TSNGHTEENYKDTAPVLDSDGSYFIYSKLNMKTSKWEKTDSFSCNVRHEGLKN 206 (218)
T ss_dssp EETTEEECCEEECCCEECTTSCEEEEEEEEEEHHHHHHCSCEEEEEECTTSGG
T ss_pred EECCEeccCceecccEECCCCCEEEEEEEEECHHHcCCCCeEEEEEEcCCCCC
Confidence 7632211 0000 0122222 3333333445899999999986554
|
| >2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=99.11 E-value=2.2e-10 Score=91.02 Aligned_cols=80 Identities=18% Similarity=0.205 Sum_probs=70.3
Q ss_pred CCCccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEee
Q psy7039 112 LAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQT 191 (516)
Q Consensus 112 ~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~ 191 (516)
.+|.|. ..+..+.+.+|+.+.|.|.+. +.|.+ +.|++++..+....++.+..
T Consensus 7 ~~p~~~-~~~~~~~v~~G~~v~l~C~~~--------------------------~~~~~-v~W~k~g~~~~~~~~~~~~~ 58 (106)
T 2dlt_A 7 GQLEVL-QDIADLTVKAAEQAVFKCEVS--------------------------DEKVT-GKWYKNGVEVRPSKRITISH 58 (106)
T ss_dssp CCCCEE-ECCCCEEEESSCCEECCCEES--------------------------CSSCE-EEEEESSCBCCCCSSCEEEE
T ss_pred CCCEEe-cCCCCeEEeCCCeEEEEEEEc--------------------------CCCcc-eEEEcCCEECcCCCCEEEEE
Confidence 355555 667789999999999999999 88877 99999999998888888887
Q ss_pred cCCeeEEEeccCCCCCCeeEEEEEEcCC
Q psy7039 192 TKSETVLDIPFCSRSDTGHYSLTLENNL 219 (516)
Q Consensus 192 ~~~~~~l~i~~~~~~d~g~Y~c~~~~~~ 219 (516)
.+....|.|.+++.+|+|.|+|.+.|..
T Consensus 59 ~~~~~~L~I~~v~~~D~G~Y~C~a~n~~ 86 (106)
T 2dlt_A 59 VGRFHKLVIDDVRPEDEGDYTFVPDGYA 86 (106)
T ss_dssp ETTEEEEEESSCCTTTCSCEEEEEETSC
T ss_pred eCCEEEEEECCCCcCCCEEEEEEEccCC
Confidence 7888899999999999999999999873
|
| >2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.11 E-value=2.7e-10 Score=89.45 Aligned_cols=86 Identities=22% Similarity=0.231 Sum_probs=69.5
Q ss_pred CCCccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeecc-CCceEEe
Q psy7039 112 LAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQI-GGRADVQ 190 (516)
Q Consensus 112 ~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~-~~~~~~~ 190 (516)
.+|.|. ..+..+.+.+|+.+.|.|.+. +.|.+.+.|++++..+.. ..++.+.
T Consensus 7 ~~P~i~-~~p~~~~v~~G~~~~l~C~~~--------------------------g~p~p~v~W~~~~~~~~~~~~~~~~~ 59 (100)
T 2edj_A 7 GPPIIL-QGPANQTLAVDGTALLKCKAT--------------------------GDPLPVISWLKEGFTFPGRDPRATIQ 59 (100)
T ss_dssp SSCEEE-ECCCCEEEESSSEEEECCEEE--------------------------CSSCCEEEEEESSSEESSSCSSCEEC
T ss_pred CCCEEE-eCcCCEEEcCCCcEEEEEEEE--------------------------EcCCCEEEEEECCEECCCCCCCEEEc
Confidence 466666 566778899999999999999 999999999999988863 3444443
Q ss_pred ecCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEE
Q psy7039 191 TTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAH 227 (516)
Q Consensus 191 ~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~ 227 (516)
...+|.|.+++.+|+|.|+|.+.|..|.......
T Consensus 60 ---~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~ 93 (100)
T 2edj_A 60 ---EQGTLQIKNLRISDTGTYTCVATSSSGETSWSAV 93 (100)
T ss_dssp ---TTCCEEEESCCTTTCCEEEEEEECSSCCCBCCEE
T ss_pred ---CCCEEEEccCCcccCEEEEEEEEcCCCCEEEEEE
Confidence 2347999999999999999999999887655443
|
| >1c5d_H Monoclonal antibody against the main immunogenic the human muscle acetylcholine receptor...; immunoglobulin, immune system; 2.40A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 2arj_H 3b9k_H* 2gk0_H 2gjz_H 1fn4_B 3mj8_H 3mj9_H* | Back alignment and structure |
|---|
Probab=99.11 E-value=9.9e-10 Score=99.48 Aligned_cols=166 Identities=13% Similarity=0.105 Sum_probs=100.1
Q ss_pred ccccCCceEEEEEEEEccCCC--CCceecccccc-----------------------cceEEEEEe--cceeeEEEccCC
Q psy7039 236 NNVHEGKAYEYRVSAVNAAGT--EKPKISLDALI-----------------------GKRIKEFVT--STTASLNIKNSV 288 (516)
Q Consensus 236 ~~l~~g~~~~~~~~~~~~~g~--p~p~i~W~~~~-----------------------~~~~~~~~~--~~~~~l~i~~l~ 288 (516)
..+.+|+.+.|.|.+ .+. +.+.+.|.+.. ..++.+... .....|.|.+++
T Consensus 10 ~~v~~G~~v~L~C~~---~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~ 86 (215)
T 1c5d_H 10 GLVQPSQTLSLTCTV---SGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTSKSQVFLKMNSLQ 86 (215)
T ss_dssp CEECTTCCEEEEEEE---CSSCTTSCCEEEEEECTTSCCEEEEEECTTCCEECCTTTGGGEEEEEETTTTEEEEEESSCC
T ss_pred eeecCCCcEEEEEEE---CCCcCCCCeEEEEEECCCCCcEEEEEEcCCCCcEECCcccCcEEEEeeCCCceEEEEECCCC
Confidence 456789999999998 443 35788995421 112222221 235689999999
Q ss_pred CCCceEEEEEEEecCCC---cceeEEEEEecCC-CCCCCCceeeeccCCeeEEEecCCCCCCCCceeecccccccccccc
Q psy7039 289 RKDSGIYKIEAKNDYGI---DMADIEVVVVSKP-GPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRD 364 (516)
Q Consensus 289 ~~d~g~y~c~a~n~~g~---~~~~~~l~v~~~p-~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~ 364 (516)
.+|+|.|.|.+.|..+. ......|.|...+ .+|. +... ...
T Consensus 87 ~~D~G~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~--i~~~---------------------------------~~~ 131 (215)
T 1c5d_H 87 TEDTAIYFCTREDGWNYFDYWGPGTMVTVSSAQTTAPS--VYPL---------------------------------APG 131 (215)
T ss_dssp GGGCEEEEEEECCSSSCSCCBCCCEEEEECSSCCBCCC--EEEE---------------------------------CCC
T ss_pred cccCEEEEEEEecCCcccceEcCCEEEEecCCCCCCCe--EEec---------------------------------cCC
Confidence 99999999999986432 1223567776422 1211 1000 001
Q ss_pred EEEEcCCeEEEEEEEeee-cCC-ceEEEECCeecCCCCceEEEEcCCeEEE--EEcCceecCCceEEEEEEEcCCCceeE
Q psy7039 365 MTVLAGEEFTITVPFSGR-PKP-TPIWTVNGDEVSPDGRIKFETSENQTIY--RNKSAKRATDSGSYTIQLVNTVGSDSA 440 (516)
Q Consensus 365 ~~v~~g~~~~l~C~~~g~-p~~-~i~W~~~~~~l~~~~~~~~~~~~~~~~l--~i~~~~~~~~~g~y~c~a~n~~G~~s~ 440 (516)
..+..|+.+.|.|.+.|. |.+ .+.|++++..+........... +...+ .+..... ++ |.|+|.|.|..|....
T Consensus 132 ~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~~~~~~~~~~~~~~-g~~~~~s~L~~~~~-~~-g~ytC~v~n~~~~~~~ 208 (215)
T 1c5d_H 132 CGDTTSSTVTLGCLVKGYFPEPVTVTWNSGALSSDVHTFPAVLQS-GLYTLTSSVTSSTW-PS-QTVTCNVAHPASSTKV 208 (215)
T ss_dssp SSCCCCSSEEEEEEEEEEBSSCCEEEEGGGTTCCSCCBCCCEEET-TEEEEEEEEEESST-TT-SCCEEEEEEGGGTEEE
T ss_pred hhhccCCcEEEEEEEeeeEcCCcEEEEccCCccCceEecCcccCC-CCEEEEEEEecccC-CC-CeEEEEEEeCCCCccE
Confidence 123578999999999987 777 9999998865431111111111 22111 1223333 35 9999999999987654
Q ss_pred EE
Q psy7039 441 SC 442 (516)
Q Consensus 441 s~ 442 (516)
..
T Consensus 209 ~~ 210 (215)
T 1c5d_H 209 DK 210 (215)
T ss_dssp EE
T ss_pred EE
Confidence 43
|
| >2lvc_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.11 E-value=2.9e-10 Score=87.36 Aligned_cols=76 Identities=13% Similarity=0.211 Sum_probs=64.5
Q ss_pred EEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEE
Q psy7039 365 MTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKV 444 (516)
Q Consensus 365 ~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l 444 (516)
+.+..|+.+.|.|.+.+ |.+.+.|+++|..+..+.++.+...+....|.|.++.. .|+|.|+|.|.|. +.++.|
T Consensus 16 v~~~~g~~v~l~C~v~~-p~~~v~W~k~g~~i~~~~~~~i~~~~~~~~L~I~~v~~-~D~G~Y~C~a~n~----~~~~~l 89 (91)
T 2lvc_A 16 VHAITSECVMLACEVDR-EDAPVRWYKDGQEVEESDFVVLENEGPHRRLVLPATQP-SDGGEFQCVAGDE----CAYFTV 89 (91)
T ss_dssp EECCTTCCEEEEEECSC-TTSCCEEEETTSCCCCCSSCEEEEETTEEEEEESSCCG-GGCSEEEEECSSC----EEEEEE
T ss_pred EEEECCCcEEEEEEECC-CCcEEEEEECCEEeeeeeeeeEEecCCeEEEEeCCCCh-hhcEEEEEEEcce----EEEEEE
Confidence 34568999999999865 88899999999999888899988888888999999999 9999999998554 455555
Q ss_pred EE
Q psy7039 445 YV 446 (516)
Q Consensus 445 ~v 446 (516)
+|
T Consensus 90 tV 91 (91)
T 2lvc_A 90 TI 91 (91)
T ss_dssp EC
T ss_pred EC
Confidence 43
|
| >3teu_A Fibcon; FN3 domain, fibronectin TPYE III domain, consensus design, S de novo protein; HET: DIO; 1.00A {Synthetic} | Back alignment and structure |
|---|
Probab=99.11 E-value=4.9e-10 Score=87.62 Aligned_cols=82 Identities=32% Similarity=0.535 Sum_probs=68.5
Q ss_pred CCCCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCC-CeEEeEEeecCCcEEEeCCCcCCCeEEEEEEEec
Q psy7039 13 EPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTG-NWEKAVVVPAGETSCTVPGLIEGETYQFQVRAVN 91 (516)
Q Consensus 13 ~p~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~-~~~~~~~~~~~~~~~~i~~l~~~~~y~~~~~a~n 91 (516)
.+++|.+|++..++++++.|+|.+|. +.|.+|.|+|+..++ .+..........+++.|.+|.++..|.|+++|.|
T Consensus 1 v~~~P~~l~v~~~~~~sv~l~W~~p~----~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n 76 (98)
T 3teu_A 1 MLDAPTDLQVTNVTDTSITVSWTPPS----ATITGYRITYTPSNGPGEPKELTVPPSSTSVTITGLTPGVEYVVSVYALK 76 (98)
T ss_dssp CCCCCEEEEEEEECSSCEEEEEECCS----SCCSEEEEEEEETTSCSCCEEEEECTTCSEEEECSCCTTCEEEEEEEEEE
T ss_pred CCCCCCceEEEEecCCEEEEEEeCCC----CcccEEEEEEEECCCCCceEEEEcCCCcCEEEecCCCCCCEEEEEEEEEe
Confidence 47899999999999999999999983 568999999996543 3333344556789999999999999999999999
Q ss_pred CCCCCCC
Q psy7039 92 AAGPGEA 98 (516)
Q Consensus 92 ~~g~~~~ 98 (516)
..|.+.+
T Consensus 77 ~~G~s~p 83 (98)
T 3teu_A 77 DNQESPP 83 (98)
T ss_dssp TTEECCC
T ss_pred CCCCCCC
Confidence 9987764
|
| >2dmk_A Midline 2 isoform 2; midline defect 2, tripartite motif protein 1, midin-2, ring finger protein 60, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.11 E-value=7.7e-10 Score=91.06 Aligned_cols=83 Identities=24% Similarity=0.401 Sum_probs=68.6
Q ss_pred CCCCCCCCCc-ceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeC------------CCCeEEeEEeecCCcEEEeC
Q psy7039 9 NPFDEPGKPT-DLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDK------------TGNWEKAVVVPAGETSCTVP 75 (516)
Q Consensus 9 ~~~~~p~~p~-~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~------------~~~~~~~~~~~~~~~~~~i~ 75 (516)
...++|++|. ++++..+++++|.|+|.+|..++ +..|.++|+.. ...|..+.. ...++++|.
T Consensus 11 ~~~~~P~~P~~~~~~~~~~~~sv~L~W~~p~~~g---~~~Y~~~Y~~~~~~~~~~~~~~~~~~w~~~~~--~~~~~~~v~ 85 (127)
T 2dmk_A 11 DYLTAPNPPSIREELCTASHDTITVHWISDDEFS---ISSYELQYTIFTGQANFISLYNSVDSWMIVPN--IKQNHYTVH 85 (127)
T ss_dssp SCCSSCCCCEEEEEEEEEETTEEEEEEECSCCSS---EEEEEEEEEEESCCSCHHHHHHTGGGSEEEEE--ECSSEEEEE
T ss_pred cccCCCcCCCCCCEEEeeeCCEEEEEECCCCCCC---ccceEEEEEEecccccccccccCCCCcEEeec--ccCCeEEEC
Confidence 3467899999 99999999999999999986333 78899988751 126876544 367899999
Q ss_pred CCcCCCeEEEEEEEecCCCCC
Q psy7039 76 GLIEGETYQFQVRAVNAAGPG 96 (516)
Q Consensus 76 ~l~~~~~y~~~~~a~n~~g~~ 96 (516)
+|+++..|.|+|+|.|..|.+
T Consensus 86 gL~p~t~Y~frV~A~N~~G~~ 106 (127)
T 2dmk_A 86 GLQSGTRYIFIVKAINQAGSR 106 (127)
T ss_dssp SCCSSCEEEEEEEEEESSCEE
T ss_pred CCCCCCEEEEEEEEEeCCCCC
Confidence 999999999999999999983
|
| >2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.10 E-value=3.3e-10 Score=88.88 Aligned_cols=85 Identities=21% Similarity=0.290 Sum_probs=71.1
Q ss_pred cccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCC-CCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeE
Q psy7039 362 IRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSP-DGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSA 440 (516)
Q Consensus 362 ~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~-~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~ 440 (516)
+....+..|+.+.|.|.+.|.|.+.+.|++++..+.. ..++... ....|.|.++.. .|.|.|+|.|.|..|..+.
T Consensus 15 p~~~~v~~G~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~---~~~~L~i~~v~~-~d~G~Y~C~a~n~~g~~~~ 90 (100)
T 2edj_A 15 PANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQ---EQGTLQIKNLRI-SDTGTYTCVATSSSGETSW 90 (100)
T ss_dssp CCCEEEESSSEEEECCEEECSSCCEEEEEESSSEESSSCSSCEEC---TTCCEEEESCCT-TTCCEEEEEEECSSCCCBC
T ss_pred cCCEEEcCCCcEEEEEEEEEcCCCEEEEEECCEECCCCCCCEEEc---CCCEEEEccCCc-ccCEEEEEEEEcCCCCEEE
Confidence 4567889999999999999999999999999987763 3444432 123699999999 9999999999999999988
Q ss_pred EEEEEEecCC
Q psy7039 441 SCKVYVVDKP 450 (516)
Q Consensus 441 s~~l~v~~~p 450 (516)
++.|.|..+|
T Consensus 91 ~~~l~V~~~~ 100 (100)
T 2edj_A 91 SAVLDVTESG 100 (100)
T ss_dssp CEEEEEESCC
T ss_pred EEEEEEecCC
Confidence 9999998653
|
| >3s98_A Interferon alpha/beta receptor 1; human, type I interferons, receptor chain, ifnar1, fibronect III, type I interferon receptor chain; HET: NAG; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.10 E-value=2.5e-09 Score=102.45 Aligned_cols=83 Identities=19% Similarity=0.280 Sum_probs=49.9
Q ss_pred CCCCCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCC-CeEEeEE-eecCCcEEEeC--CCcCCCeEEEEE
Q psy7039 12 DEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTG-NWEKAVV-VPAGETSCTVP--GLIEGETYQFQV 87 (516)
Q Consensus 12 ~~p~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~-~~~~~~~-~~~~~~~~~i~--~l~~~~~y~~~~ 87 (516)
+...+|.++++... +..+.|+|.+|. ++.+++. |.|+|+..+. .|..... .....+.+.+. .|.+...|.++|
T Consensus 2 ~~l~~P~nv~~~~~-n~~~iL~W~pp~-~~~~~v~-Y~V~y~~~~~~~W~~~~~c~~~~~~~c~lt~~~l~~~~~Y~~rV 78 (306)
T 3s98_A 2 DPLKSPQKVEVDII-DDNFILRWNRSD-ESVGNVT-FSFDYQKTGMDNWIKLSGCQNITSTKCNFSSLKLNVYEEIKLRI 78 (306)
T ss_dssp ------CCCEEEEE-TTEEEEECC---------CE-EEEEEEESSCSSCEECTTCSSBSSSEEECCC---CTTSCEEEEE
T ss_pred CCCCCCcEeEEEEE-CCeEEEEEcCCC-CCCCCeE-EEEEEEECCCCCcEECCCccCCCCCEEEccccccCCCCcEEEEE
Confidence 34568999999865 666889999985 4445666 9999998655 7976421 22234555554 567999999999
Q ss_pred EEecCCCCCCC
Q psy7039 88 RAVNAAGPGEA 98 (516)
Q Consensus 88 ~a~n~~g~~~~ 98 (516)
+|.| .|.+.+
T Consensus 79 ~A~n-~~~S~~ 88 (306)
T 3s98_A 79 RAEK-ENTSSW 88 (306)
T ss_dssp EEEC-SSCEEE
T ss_pred EEEe-CCcCCC
Confidence 9999 665543
|
| >1x5a_A Ephrin type-A receptor 1; tyrosine-protein kinase receptor, ESK, fibronectin type III (FN3) domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.1.2.1 | Back alignment and structure |
|---|
Probab=99.10 E-value=1.3e-09 Score=86.75 Aligned_cols=91 Identities=22% Similarity=0.383 Sum_probs=72.1
Q ss_pred ccCCCCCCCCCcceEEEeeeCCeeEEEe--cCCCCCCCCceeceEEEEEeCCCCeEEeEEeecCCcEEEeCCCcCCCeEE
Q psy7039 7 IKNPFDEPGKPTDLEATDWDKDHVDLQW--TPPISDGGSPITGYVVEMKDKTGNWEKAVVVPAGETSCTVPGLIEGETYQ 84 (516)
Q Consensus 7 ~~~~~~~p~~p~~l~~~~~~~~~v~l~W--~~p~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~ 84 (516)
..+.++.|++|.+|++..++.++|.|+| .+|...++ . .+|.|+|+.....+ .. .. ....++|.+|++++.|.
T Consensus 3 ~~T~~~~P~~p~~l~~~~~~~~sv~l~W~~~~P~~~ng-~-~~Y~v~y~~~~~~~-~~-~~--~~~~~~i~~L~p~t~Y~ 76 (107)
T 1x5a_A 3 SGSSGAESLSGLSLKLVKKEPRQLELTWAGSRPRNPGG-N-LSYELHVLNQDEEW-HQ-MV--LEPRVLLTKLQPDTTYI 76 (107)
T ss_dssp CTTTTCCCCCSCCCCEEEEETTEEEEECCCCCSSCCSS-C-CEEEEEEECSSCEE-EE-EE--SSSEEEEESCCSSCEEE
T ss_pred ccCCCCCCCCCCceEEEecCCCEEEEEECCCCCCCCCC-c-eEEEEEEEeCCCCc-eE-EE--ecceEEECCCCCCCEEE
Confidence 4677899999999999999999999999 88865444 4 99999998762211 11 11 23349999999999999
Q ss_pred EEEEEecCCCCCCCCCCCc
Q psy7039 85 FQVRAVNAAGPGEASKPTA 103 (516)
Q Consensus 85 ~~~~a~n~~g~~~~s~~~~ 103 (516)
|+|+|.|..|.+.++....
T Consensus 77 f~V~A~~~~G~g~~S~~~~ 95 (107)
T 1x5a_A 77 VRVRTLTPLGPGPFSPDHE 95 (107)
T ss_dssp EEEEEECSSSCCCCCCCEE
T ss_pred EEEEEECCCccCCCCCCEE
Confidence 9999999999888766443
|
| >3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus musculus} PDB: 2qhr_L 3ffd_B 4dcq_A | Back alignment and structure |
|---|
Probab=99.10 E-value=2.6e-10 Score=103.35 Aligned_cols=131 Identities=7% Similarity=0.041 Sum_probs=83.4
Q ss_pred cCCcEEEeCCCcCCCeEEEEEEEecCCCC---CCCCCCCcceEecc-CCCCCccccCcccceEEecCCeEEEEEeeeecc
Q psy7039 67 AGETSCTVPGLIEGETYQFQVRAVNAAGP---GEASKPTAPIVAKP-KNLAPRIDRSTLNDVKIKAGQSFSFDVKEFREL 142 (516)
Q Consensus 67 ~~~~~~~i~~l~~~~~y~~~~~a~n~~g~---~~~s~~~~~~~~~~-~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~ 142 (516)
....+|.|.+++..|.|.|+|.|.|..|. ..... ...+.+.. ...+|.+... +....+..|+.+.|.|.+.
T Consensus 72 ~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~-~~~l~V~~~~~~~P~~~~~-~~~~~~~~~~~v~L~C~~~--- 146 (218)
T 3s96_B 72 GADRYLSISNIQPEDEAIYICGVGDTIKEQFVYVFGG-GTKVTVLGQPKSTPTLTVF-PPSSEELKENKATLVCLIS--- 146 (218)
T ss_dssp TTEEEEEESSCCGGGCEEEEEEEEEEETTEEEEEECC-CEEEEEESCCCBCCEEEEE-CCCHHHHHTTEEEEEEEEE---
T ss_pred CceEEEEEccCCcccCEEEEEEEecCCCCceeEEEcC-cEEEEEecCCCCCceEEee-CCCcccccCCcEEEEEEEC---
Confidence 35678999999999999999999987651 11111 12233322 2245655422 2223345678999999999
Q ss_pred ccccCccccccccccCccceeecC-cCce-eeEEeeCCeeeccCCceE--EeecCC---eeEEEeccCCCCCCeeEEEEE
Q psy7039 143 SYTKSPLRALGVRANSTKGWVKLS-EPFL-NHGWSINGQVCQIGGRAD--VQTTKS---ETVLDIPFCSRSDTGHYSLTL 215 (516)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~-~p~~-~i~W~~~~~~~~~~~~~~--~~~~~~---~~~l~i~~~~~~d~g~Y~c~~ 215 (516)
+ .|.+ .+.|++++..+....... ....+. .+.|.|.....+|.|.|+|.+
T Consensus 147 -----------------------g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a 203 (218)
T 3s96_B 147 -----------------------NFSPSGVTVAWKANGTPITQGVDTSNPTKEGNKFMASSFLHLTSDQWRSHNSFTCQV 203 (218)
T ss_dssp -----------------------EEBSSCCEEEEEETTEEC--------------CEEEEEEEEEEHHHHHTCSCEEEEE
T ss_pred -----------------------cccCCCeEEEEEECCEECcCceecCcccccCCcEEEEEEEEEeHHHccCCCeEEEEE
Confidence 6 5666 899999999886532111 111111 235888888889999999999
Q ss_pred EcCCCceEEE
Q psy7039 216 ENNLGTATAS 225 (516)
Q Consensus 216 ~~~~g~~~~~ 225 (516)
.|..+.....
T Consensus 204 ~n~~~~~~~~ 213 (218)
T 3s96_B 204 THEGDTVEKS 213 (218)
T ss_dssp EETTEEEEEE
T ss_pred EeCCCccccc
Confidence 9987765543
|
| >2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.09 E-value=4.5e-10 Score=88.89 Aligned_cols=88 Identities=20% Similarity=0.396 Sum_probs=75.6
Q ss_pred ccccEEEEcCCeEEEEEEEeeecCC-ceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCcee
Q psy7039 361 SIRDMTVLAGEEFTITVPFSGRPKP-TPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDS 439 (516)
Q Consensus 361 ~~~~~~v~~g~~~~l~C~~~g~p~~-~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s 439 (516)
.+.+..+.+|+.+.|.|.+.+.+.+ .+.|++++..+..+.++.+...+....|.|.++.. .|+|.|+|.|. ...
T Consensus 14 ~~~~~~v~~G~~v~l~C~v~~~~~~~~v~W~k~g~~i~~~~r~~~~~~~~~~~L~I~~v~~-~D~G~Y~C~a~----~~~ 88 (104)
T 2eny_A 14 RLKTMEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQATRQGRKYILVVREAAP-SDAGEVVFSVR----GLT 88 (104)
T ss_dssp CCCCEEEESSCCEEEEEECSSCCCSSCBCCBSSSSBCSBCSSCEEEEETTEEEEEECSCCT-TTCSCEEEEET----TEE
T ss_pred cCCCcEEcCCCcEEEEEEEcCCCCCceeEEEECCEECCCCCCEEEEEcCCEEEEEECCCCH-HHCEEEEEEEC----Cee
Confidence 4567889999999999999988754 89999999999888888888777788999999999 99999999884 456
Q ss_pred EEEEEEEecCCCCC
Q psy7039 440 ASCKVYVVDKPSPP 453 (516)
Q Consensus 440 ~s~~l~v~~~p~~P 453 (516)
.++.|.|..+|..+
T Consensus 89 ~~a~L~V~~~p~~~ 102 (104)
T 2eny_A 89 SKASLIVRERSGPS 102 (104)
T ss_dssp EEECEEEECCCSSC
T ss_pred EEEEEEEeCCCcCC
Confidence 78899998876544
|
| >2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.09 E-value=4.7e-10 Score=88.74 Aligned_cols=71 Identities=14% Similarity=0.168 Sum_probs=64.2
Q ss_pred eEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEeecCCeeEEEeccC
Q psy7039 124 VKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFC 203 (516)
Q Consensus 124 ~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~ 203 (516)
+.+.+|+.+.|.|.+. +.|.+ +.|++++..+....++.+...+....|.|.++
T Consensus 20 ~~v~~G~~v~l~C~~~--------------------------~~p~~-v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~~ 72 (104)
T 2e6p_A 20 LTFTTSERVVLTCELS--------------------------RVDFP-ATWYKDGQKVEESELLVVKMDGRKHRLILPEA 72 (104)
T ss_dssp EEEESSSCEECCEECS--------------------------STTCC-CEEEETTEECCCBTTBEEEEETTEEEEEESSC
T ss_pred EEEeCCCcEEEEEEec--------------------------CCCCc-cEEeeCCEECCCCCCEEEEeCCCEEEEEECCC
Confidence 7889999999999999 88888 99999999998888888887778889999999
Q ss_pred CCCCCeeEEEEEEcCCCc
Q psy7039 204 SRSDTGHYSLTLENNLGT 221 (516)
Q Consensus 204 ~~~d~g~Y~c~~~~~~g~ 221 (516)
+.+|+|.|+|.+.|..+.
T Consensus 73 ~~~D~G~Y~C~a~n~~~~ 90 (104)
T 2e6p_A 73 KVQDSGEFECRTEGVSAF 90 (104)
T ss_dssp CTTTCEEEEEECSSCCCC
T ss_pred ChhhCEEEEEEECCceEE
Confidence 999999999999886543
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 516 | ||||
| d1x5ya1 | 98 | b.1.2.1 (A:8-105) Myosin binding protein C, fast-t | 5e-22 | |
| d1x5ya1 | 98 | b.1.2.1 (A:8-105) Myosin binding protein C, fast-t | 5e-07 | |
| d1x5ya1 | 98 | b.1.2.1 (A:8-105) Myosin binding protein C, fast-t | 7e-04 | |
| d1x4za1 | 108 | b.1.2.1 (A:8-115) Brother of CDO precursor (BOC) { | 2e-21 | |
| d1x4za1 | 108 | b.1.2.1 (A:8-115) Brother of CDO precursor (BOC) { | 9e-06 | |
| d1x4za1 | 108 | b.1.2.1 (A:8-115) Brother of CDO precursor (BOC) { | 0.002 | |
| d1x5la1 | 98 | b.1.2.1 (A:8-105) Ephrin type-A receptor 8 {Human | 1e-19 | |
| d1x5la1 | 98 | b.1.2.1 (A:8-105) Ephrin type-A receptor 8 {Human | 6e-04 | |
| d1x5fa1 | 107 | b.1.2.1 (A:8-114) Neogenin {Human (Homo sapiens) [ | 1e-18 | |
| d1x5fa1 | 107 | b.1.2.1 (A:8-114) Neogenin {Human (Homo sapiens) [ | 8e-05 | |
| d1wfna1 | 106 | b.1.2.1 (A:8-113) Sidekick 2 {Human (Homo sapiens) | 2e-18 | |
| d1wfna1 | 106 | b.1.2.1 (A:8-113) Sidekick 2 {Human (Homo sapiens) | 1e-04 | |
| d2cqva1 | 101 | b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [T | 4e-18 | |
| d2cqva1 | 101 | b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [T | 6e-08 | |
| d2cqva1 | 101 | b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [T | 9e-06 | |
| d1wfoa1 | 117 | b.1.2.1 (A:8-124) Sidekick 2 {Human (Homo sapiens) | 5e-18 | |
| d1wfoa1 | 117 | b.1.2.1 (A:8-124) Sidekick 2 {Human (Homo sapiens) | 8e-04 | |
| d1x3da1 | 105 | b.1.2.1 (A:8-112) Fibronectin type-III domain cont | 6e-18 | |
| d1x3da1 | 105 | b.1.2.1 (A:8-112) Fibronectin type-III domain cont | 7e-04 | |
| d1wf5a1 | 108 | b.1.2.1 (A:8-115) Sidekick 2 {Human (Homo sapiens) | 7e-18 | |
| d1wf5a1 | 108 | b.1.2.1 (A:8-115) Sidekick 2 {Human (Homo sapiens) | 3e-08 | |
| d1wf5a1 | 108 | b.1.2.1 (A:8-115) Sidekick 2 {Human (Homo sapiens) | 5e-05 | |
| d1uema_ | 117 | b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens | 1e-17 | |
| d1uema_ | 117 | b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens | 6e-07 | |
| d1x5ga1 | 103 | b.1.2.1 (A:8-110) Neogenin {Human (Homo sapiens) [ | 2e-17 | |
| d1x5ga1 | 103 | b.1.2.1 (A:8-110) Neogenin {Human (Homo sapiens) [ | 3e-05 | |
| d2dn7a1 | 94 | b.1.2.1 (A:8-101) Receptor-type tyrosine-protein p | 4e-17 | |
| d2dn7a1 | 94 | b.1.2.1 (A:8-101) Receptor-type tyrosine-protein p | 1e-04 | |
| d2dn7a1 | 94 | b.1.2.1 (A:8-101) Receptor-type tyrosine-protein p | 0.002 | |
| d2crza1 | 97 | b.1.2.1 (A:8-104) Fibronectin type-III domain cont | 8e-17 | |
| d2crza1 | 97 | b.1.2.1 (A:8-104) Fibronectin type-III domain cont | 3e-09 | |
| d2crza1 | 97 | b.1.2.1 (A:8-104) Fibronectin type-III domain cont | 2e-07 | |
| d1x5za1 | 102 | b.1.2.1 (A:8-109) Receptor-type tyrosine-protein p | 1e-16 | |
| d1x5za1 | 102 | b.1.2.1 (A:8-109) Receptor-type tyrosine-protein p | 0.001 | |
| d1wisa1 | 111 | b.1.2.1 (A:8-118) Sidekick 2 {Human (Homo sapiens) | 1e-16 | |
| d1n26a3 | 104 | b.1.2.1 (A:196-299) Interleukin-6 receptor alpha c | 3e-16 | |
| d1x5xa1 | 96 | b.1.2.1 (A:8-103) Fibronectin type-III domain cont | 5e-16 | |
| d1va9a1 | 109 | b.1.2.1 (A:8-116) Down syndrome cell adhesion mole | 5e-15 | |
| d1va9a1 | 109 | b.1.2.1 (A:8-116) Down syndrome cell adhesion mole | 2e-04 | |
| d1fnaa_ | 91 | b.1.2.1 (A:) Fibronectin, different Fn3 modules {H | 7e-15 | |
| d2ic2a1 | 107 | b.1.2.1 (A:466-572) Hedgehog receptor iHog {Fruit | 1e-14 | |
| d2ic2a1 | 107 | b.1.2.1 (A:466-572) Hedgehog receptor iHog {Fruit | 0.003 | |
| d1j8ka_ | 94 | b.1.2.1 (A:) Fibronectin, different Fn3 modules {H | 1e-14 | |
| d1cd9b2 | 106 | b.1.2.1 (B:108-213) Granulocyte colony-stimulating | 1e-14 | |
| d1fnfa3 | 89 | b.1.2.1 (A:1327-1415) Fibronectin, different Fn3 m | 3e-14 | |
| d1fyhb1 | 98 | b.1.2.1 (B:12-109) Interferon-gamma receptor alpha | 4e-14 | |
| d3dara1 | 97 | b.1.1.4 (A:153-249) Fibroblast growth factor recep | 4e-14 | |
| d3dara1 | 97 | b.1.1.4 (A:153-249) Fibroblast growth factor recep | 0.002 | |
| d3dara1 | 97 | b.1.1.4 (A:153-249) Fibroblast growth factor recep | 0.002 | |
| d1uena_ | 125 | b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens | 4e-14 | |
| d2crma1 | 107 | b.1.2.1 (A:8-114) Fibronectin type-III domain cont | 5e-14 | |
| d2crma1 | 107 | b.1.2.1 (A:8-114) Fibronectin type-III domain cont | 1e-06 | |
| d2crma1 | 107 | b.1.2.1 (A:8-114) Fibronectin type-III domain cont | 8e-04 | |
| d1qg3a1 | 92 | b.1.2.1 (A:1126-1217) Integrin beta-4 subunit {Hum | 5e-14 | |
| d1qr4a1 | 87 | b.1.2.1 (A:1-87) Tenascin {Chicken (Gallus gallus) | 5e-14 | |
| d1tdqa2 | 92 | b.1.2.1 (A:94-185) Tenascin {Rat (Rattus norvegicu | 6e-14 | |
| d1cfba1 | 100 | b.1.2.1 (A:610-709) Neuroglian, two amino proximal | 7e-14 | |
| d1qr4a2 | 88 | b.1.2.1 (A:88-175) Tenascin {Chicken (Gallus gallu | 7e-14 | |
| d1fnha3 | 89 | b.1.2.1 (A:183-271) Fibronectin, different Fn3 mod | 8e-14 | |
| d1iarb2 | 101 | b.1.2.1 (B:97-197) Interleukin-4 receptor alpha ch | 9e-14 | |
| d2d9qb2 | 105 | b.1.2.1 (B:204-308) Granulocyte colony-stimulating | 1e-13 | |
| d1bpva_ | 104 | b.1.2.1 (A:) Type I titin module {Human (Homo sapi | 2e-13 | |
| d1x5aa1 | 94 | b.1.2.1 (A:8-101) Ephrin type-A receptor 1 {Mouse | 2e-13 | |
| d1g1ca_ | 98 | b.1.1.4 (A:) Titin {Human (Homo sapiens), differen | 2e-13 | |
| d1ueya_ | 127 | b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens | 3e-13 | |
| d1qg3a2 | 103 | b.1.2.1 (A:1218-1320) Integrin beta-4 subunit {Hum | 3e-13 | |
| d2vkwa2 | 93 | b.1.2.1 (A:601-693) Neural cell adhesion molecule | 4e-13 | |
| d1x5ha1 | 119 | b.1.2.1 (A:8-126) Neogenin {Human (Homo sapiens) [ | 9e-13 | |
| d2dtge2 | 196 | b.1.2.1 (E:593-807) Insulin receptor {Human (Homo | 1e-12 | |
| d2dtge2 | 196 | b.1.2.1 (E:593-807) Insulin receptor {Human (Homo | 2e-09 | |
| d2dtge2 | 196 | b.1.2.1 (E:593-807) Insulin receptor {Human (Homo | 2e-04 | |
| d2dtge2 | 196 | b.1.2.1 (E:593-807) Insulin receptor {Human (Homo | 0.003 | |
| d1fnha1 | 90 | b.1.2.1 (A:3-92) Fibronectin, different Fn3 module | 1e-12 | |
| d2djsa1 | 95 | b.1.2.1 (A:8-102) Ephrin type-B receptor 1 {Human | 1e-12 | |
| d1uc6a_ | 109 | b.1.2.1 (A:) Ciliary neurotrophic factor receptor | 1e-12 | |
| d1uc6a_ | 109 | b.1.2.1 (A:) Ciliary neurotrophic factor receptor | 0.001 | |
| d1bqua1 | 95 | b.1.2.1 (A:5-99) Cytokine receptor gp130 cytokine- | 1e-12 | |
| d1f6fb2 | 103 | b.1.2.1 (B:101-203) Prolactin receptor {Rat (Rattu | 2e-12 | |
| d1f6fb2 | 103 | b.1.2.1 (B:101-203) Prolactin receptor {Rat (Rattu | 7e-05 | |
| d1x5ja1 | 100 | b.1.2.1 (A:8-107) Neogenin {Human (Homo sapiens) [ | 4e-12 | |
| d1wk0a_ | 137 | b.1.2.1 (A:) Fibronectin type-III domain containin | 4e-12 | |
| d1wk0a_ | 137 | b.1.2.1 (A:) Fibronectin type-III domain containin | 0.003 | |
| d1fnha2 | 90 | b.1.2.1 (A:93-182) Fibronectin, different Fn3 modu | 5e-12 | |
| d1fnha2 | 90 | b.1.2.1 (A:93-182) Fibronectin, different Fn3 modu | 0.002 | |
| d1cd9b1 | 107 | b.1.2.1 (B:1-107) Granulocyte colony-stimulating f | 6e-12 | |
| d1cd9b1 | 107 | b.1.2.1 (B:1-107) Granulocyte colony-stimulating f | 3e-06 | |
| d1cd9b1 | 107 | b.1.2.1 (B:1-107) Granulocyte colony-stimulating f | 0.002 | |
| d1qz1a3 | 100 | b.1.1.4 (A:190-289) Neural cell adhesion molecule | 6e-12 | |
| d1qz1a3 | 100 | b.1.1.4 (A:190-289) Neural cell adhesion molecule | 0.001 | |
| d1tdqa3 | 86 | b.1.2.1 (A:186-271) Tenascin {Rat (Rattus norvegic | 6e-12 | |
| d1gxea_ | 130 | b.1.1.4 (A:) Cardiac myosin binding protein C, dif | 6e-12 | |
| d1gxea_ | 130 | b.1.1.4 (A:) Cardiac myosin binding protein C, dif | 7e-08 | |
| d1gxea_ | 130 | b.1.1.4 (A:) Cardiac myosin binding protein C, dif | 3e-05 | |
| d2cuia1 | 101 | b.1.2.1 (A:6-106) Tenascin-X {Human (Homo sapiens) | 7e-12 | |
| d1fnfa2 | 91 | b.1.2.1 (A:1236-1326) Fibronectin, different Fn3 m | 9e-12 | |
| d1x4ya1 | 101 | b.1.2.1 (A:8-108) Brother of CDO precursor (BOC) { | 1e-11 | |
| d2cuma1 | 93 | b.1.2.1 (A:7-99) Tenascin-X {Human (Homo sapiens) | 1e-11 | |
| d1k85a_ | 88 | b.1.2.1 (A:) Fibronectin type III domain from chit | 2e-11 | |
| d1k85a_ | 88 | b.1.2.1 (A:) Fibronectin type III domain from chit | 3e-04 | |
| d1x5ka1 | 111 | b.1.2.1 (A:8-118) Neogenin {Human (Homo sapiens) [ | 2e-11 | |
| d1koaa1 | 97 | b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorha | 2e-11 | |
| d1koaa1 | 97 | b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorha | 1e-04 | |
| d1axib2 | 106 | b.1.2.1 (B:131-236) Growth hormone receptor {Human | 2e-11 | |
| d2b5ib2 | 104 | b.1.2.1 (B:104-207) Interleukin-2 receptor beta ch | 3e-11 | |
| d2b5ib2 | 104 | b.1.2.1 (B:104-207) Interleukin-2 receptor beta ch | 0.001 | |
| d1fhga_ | 102 | b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) | 4e-11 | |
| d1fnfa1 | 94 | b.1.2.1 (A:1142-1235) Fibronectin, different Fn3 m | 6e-11 | |
| d1tnna_ | 91 | b.1.1.4 (A:) Titin {Human (Homo sapiens), differen | 6e-11 | |
| d1tena_ | 90 | b.1.2.1 (A:) Tenascin {Human (Homo sapiens) [TaxId | 9e-11 | |
| d1x4xa1 | 93 | b.1.2.1 (A:8-100) Fibronectin type-III domain cont | 2e-10 | |
| d1cfba2 | 105 | b.1.2.1 (A:710-814) Neuroglian, two amino proximal | 2e-10 | |
| d1tdqa1 | 93 | b.1.2.1 (A:1-93) Tenascin {Rat (Rattus norvegicus) | 2e-10 | |
| d2dtge3 | 125 | b.1.2.1 (E:468-592) Insulin receptor {Human (Homo | 3e-10 | |
| d2dtge3 | 125 | b.1.2.1 (E:468-592) Insulin receptor {Human (Homo | 0.004 | |
| d2gysa2 | 114 | b.1.2.1 (A:104-217) Common beta-chain in the GM-CS | 3e-10 | |
| d1wfta_ | 123 | b.1.2.1 (A:) Host cell factor 2, HCF-2 {Mouse (Mus | 5e-10 | |
| d2fnba_ | 95 | b.1.2.1 (A:) Fibronectin, different Fn3 modules {H | 7e-10 | |
| d1y6kr1 | 99 | b.1.2.1 (R:2-100) Interleukin-10 receptor 1, IL-10 | 9e-10 | |
| d2ibga1 | 95 | b.1.2.1 (A:573-667) Hedgehog receptor iHog {Fruit | 9e-10 | |
| d2gysa4 | 100 | b.1.2.1 (A:317-416) Common beta-chain in the GM-CS | 1e-09 | |
| d1wfua_ | 120 | b.1.2.1 (A:) Fibronectin type 3 and ankyrin repeat | 1e-09 | |
| d2fdbp2 | 109 | b.1.1.4 (P:2252-2360) Fibroblast growth factor rec | 1e-09 | |
| d2fdbp2 | 109 | b.1.1.4 (P:2252-2360) Fibroblast growth factor rec | 2e-04 | |
| d2fdbp2 | 109 | b.1.1.4 (P:2252-2360) Fibroblast growth factor rec | 0.001 | |
| d2b5ic1 | 95 | b.1.2.1 (C:130-224) Cytokine receptor common gamma | 2e-09 | |
| d2haza1 | 101 | b.1.2.1 (A:489-589) Neural cell adhesion molecule | 2e-09 | |
| d1biha4 | 89 | b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecr | 2e-09 | |
| d1biha4 | 89 | b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecr | 4e-05 | |
| d1biha4 | 89 | b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecr | 4e-04 | |
| d1wiua_ | 93 | b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis el | 3e-09 | |
| d1owwa_ | 93 | b.1.2.1 (A:) Fibronectin, different Fn3 modules {H | 3e-09 | |
| d1bqua2 | 115 | b.1.2.1 (A:100-214) Cytokine receptor gp130 cytoki | 4e-09 | |
| d3d48r2 | 104 | b.1.2.1 (R:101-204) Prolactin receptor {Human (Hom | 4e-09 | |
| d1cs6a3 | 91 | b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gall | 1e-08 | |
| d1erna2 | 105 | b.1.2.1 (A:117-221) Erythropoietin (EPO) receptor | 2e-08 | |
| d1ujta_ | 120 | b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens | 3e-08 | |
| d2dtge1 | 102 | b.1.2.1 (E:808-909) Insulin receptor {Human (Homo | 3e-08 | |
| d1cs6a4 | 89 | b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gall | 1e-07 | |
| d1x5ia1 | 113 | b.1.2.1 (A:8-120) Neogenin {Human (Homo sapiens) [ | 3e-07 | |
| d3b5ha1 | 101 | b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo | 6e-07 | |
| d1wwbx_ | 103 | b.1.1.4 (X:) Ligand binding domain of trkB recepto | 7e-07 | |
| d1wwbx_ | 103 | b.1.1.4 (X:) Ligand binding domain of trkB recepto | 0.004 | |
| d1he7a_ | 107 | b.1.1.4 (A:) High affinity nerve growth factor rec | 2e-06 | |
| d1he7a_ | 107 | b.1.1.4 (A:) High affinity nerve growth factor rec | 1e-04 | |
| d2ifga1 | 92 | b.1.1.4 (A:192-283) High affinity nerve growth fac | 2e-06 | |
| d2cuha1 | 102 | b.1.2.1 (A:8-109) Tenascin-X {Human (Homo sapiens) | 2e-06 | |
| d1epfa2 | 92 | b.1.1.4 (A:98-189) Neural cell adhesion molecule ( | 5e-06 | |
| d1wj3a_ | 117 | b.1.2.1 (A:) Contactin 3 (KIAA1496) {Human (Homo s | 6e-06 | |
| d1wwca_ | 105 | b.1.1.4 (A:) NT3 binding domain of trkC receptor { | 7e-06 | |
| d1wwca_ | 105 | b.1.1.4 (A:) NT3 binding domain of trkC receptor { | 2e-05 | |
| d2oz4a3 | 84 | b.1.1.4 (A:367-450) Intercellular adhesion molecul | 8e-06 | |
| d1rhfa1 | 91 | b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor | 1e-05 | |
| d1biha2 | 111 | b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecro | 3e-05 | |
| d1f97a2 | 110 | b.1.1.4 (A:129-238) Junction adhesion molecule, JA | 4e-05 | |
| d1nbqa2 | 104 | b.1.1.4 (A:130-233) Junction adhesion molecule, JA | 5e-05 | |
| d1v5ja_ | 108 | b.1.2.1 (A:) KIAA1355 {Human (Homo sapiens) [TaxId | 5e-05 | |
| d1iray1 | 101 | b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {H | 5e-05 | |
| d1iray3 | 107 | b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor | 1e-04 | |
| d1pd6a_ | 94 | b.1.1.4 (A:) Cardiac myosin binding protein C, dif | 1e-04 | |
| d2dava1 | 113 | b.1.1.4 (A:8-120) Myosin-binding protein C, slow-t | 2e-04 | |
| d2dava1 | 113 | b.1.1.4 (A:8-120) Myosin-binding protein C, slow-t | 6e-04 | |
| d2cspa1 | 117 | b.1.2.1 (A:8-124) Rim binding protein 2 {Human (Ho | 4e-04 | |
| d1x44a1 | 90 | b.1.1.4 (A:8-97) Myosin-binding protein C, slow-ty | 4e-04 | |
| d1gl4b_ | 89 | b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus muscu | 9e-04 | |
| d2avga1 | 110 | b.1.1.4 (A:1-110) Cardiac myosin binding protein C | 0.001 | |
| d1f6fb1 | 96 | b.1.2.1 (B:5-100) Prolactin receptor {Rat (Rattus | 0.003 | |
| d2crya1 | 115 | b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRR | 0.004 |
| >d1x5ya1 b.1.2.1 (A:8-105) Myosin binding protein C, fast-type {Mouse (Mus musculus) [TaxId: 10090]} Length = 98 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Myosin binding protein C, fast-type species: Mouse (Mus musculus) [TaxId: 10090]
Score = 88.4 bits (218), Expect = 5e-22
Identities = 28/96 (29%), Positives = 35/96 (36%), Gaps = 1/96 (1%)
Query: 14 PGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGN-WEKAVVVPAGETSC 72
P L D L+W PP G I GY+VE + W A P
Sbjct: 2 TSAPQHLTVEDVTDTTTTLKWRPPDRIGAGGIDGYLVEYCLEGSEEWVPANKEPVERCGF 61
Query: 73 TVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAK 108
TV L G F+V VN AG E + P+ +
Sbjct: 62 TVKDLPTGARILFRVVGVNIAGRSEPATLLQPVTIR 97
|
| >d1x5ya1 b.1.2.1 (A:8-105) Myosin binding protein C, fast-type {Mouse (Mus musculus) [TaxId: 10090]} Length = 98 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Myosin binding protein C, fast-type species: Mouse (Mus musculus) [TaxId: 10090]
Score = 46.0 bits (108), Expect = 5e-07
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 450 PSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYE 491
S PQ V D+T + +L W+PP G I Y+VE
Sbjct: 2 TSAPQHL-TVEDVTDTTTTLKWRPPDRIGAGGIDGYLVEYCL 42
|
| >d1x5ya1 b.1.2.1 (A:8-105) Myosin binding protein C, fast-type {Mouse (Mus musculus) [TaxId: 10090]} Length = 98 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Myosin binding protein C, fast-type species: Mouse (Mus musculus) [TaxId: 10090]
Score = 36.8 bits (84), Expect = 7e-04
Identities = 9/35 (25%), Positives = 13/35 (37%), Gaps = 1/35 (2%)
Query: 318 PGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITG 352
P VT + ++ W+PP G I G
Sbjct: 2 TSAPQHL-TVEDVTDTTTTLKWRPPDRIGAGGIDG 35
|
| >d1x4za1 b.1.2.1 (A:8-115) Brother of CDO precursor (BOC) {Mouse (Mus musculus) [TaxId: 10090]} Length = 108 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Brother of CDO precursor (BOC) species: Mouse (Mus musculus) [TaxId: 10090]
Score = 86.7 bits (214), Expect = 2e-21
Identities = 33/103 (32%), Positives = 47/103 (45%), Gaps = 4/103 (3%)
Query: 9 NPFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMK--DKTGNWEKAV-VV 65
P P + + V + W P +GG PI + VE K K G+W A +
Sbjct: 6 GRLSPPEAPDRPTISTASETSVYVTWIPR-GNGGFPIQSFRVEYKKLKKVGDWILATSAI 64
Query: 66 PAGETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAK 108
P S + GL +G +Y+F+VRA+N G E S P+ P V
Sbjct: 65 PPSRLSVEITGLEKGISYKFRVRALNMLGESEPSAPSRPYVVS 107
|
| >d1x4za1 b.1.2.1 (A:8-115) Brother of CDO precursor (BOC) {Mouse (Mus musculus) [TaxId: 10090]} Length = 108 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Brother of CDO precursor (BOC) species: Mouse (Mus musculus) [TaxId: 10090]
Score = 42.4 bits (99), Expect = 9e-06
Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 447 VDKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKY 490
+ P P P +S + S ++W P +GG PI ++ VE
Sbjct: 8 LSPPEAPDRP-TISTASETSVYVTWIPR-GNGGFPIQSFRVEYK 49
|
| >d1x4za1 b.1.2.1 (A:8-115) Brother of CDO precursor (BOC) {Mouse (Mus musculus) [TaxId: 10090]} Length = 108 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Brother of CDO precursor (BOC) species: Mouse (Mus musculus) [TaxId: 10090]
Score = 36.3 bits (83), Expect = 0.002
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 315 VSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPIT 351
+S P P P +T + SV ++W P +GG PI
Sbjct: 8 LSPPEAPDRPT-ISTASETSVYVTWIPR-GNGGFPIQ 42
|
| >d1x5la1 b.1.2.1 (A:8-105) Ephrin type-A receptor 8 {Human (Homo sapiens) [TaxId: 9606]} Length = 98 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Ephrin type-A receptor 8 species: Human (Homo sapiens) [TaxId: 9606]
Score = 81.8 bits (201), Expect = 1e-19
Identities = 28/96 (29%), Positives = 38/96 (39%), Gaps = 1/96 (1%)
Query: 14 PGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVVVPAGETSCT 73
P + + + V L W P G I Y ++ +K + + A T T
Sbjct: 4 PSQVVVIRQERAGQTSVSLLWQEPEQPNG-IILEYEIKYYEKDKEMQSYSTLKAVTTRAT 62
Query: 74 VPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKP 109
V GL G Y FQVRA +AG G S+ KP
Sbjct: 63 VSGLKPGTRYVFQVRARTSAGCGRFSQAMEVETGKP 98
|
| >d1x5la1 b.1.2.1 (A:8-105) Ephrin type-A receptor 8 {Human (Homo sapiens) [TaxId: 9606]} Length = 98 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Ephrin type-A receptor 8 species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.1 bits (85), Expect = 6e-04
Identities = 10/36 (27%), Positives = 12/36 (33%), Gaps = 2/36 (5%)
Query: 450 PSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNY 485
PS + S SL W+ P G I Y
Sbjct: 4 PSQVVV-IRQERAGQTSVSLLWQEPEQPNG-IILEY 37
|
| >d1x5fa1 b.1.2.1 (A:8-114) Neogenin {Human (Homo sapiens) [TaxId: 9606]} Length = 107 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Neogenin species: Human (Homo sapiens) [TaxId: 9606]
Score = 79.2 bits (194), Expect = 1e-18
Identities = 26/90 (28%), Positives = 34/90 (37%), Gaps = 1/90 (1%)
Query: 14 PGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVE-MKDKTGNWEKAVVVPAGETSC 72
P P D+ A+ + L W P SD Y V K+ GE
Sbjct: 11 PSAPRDVVASLVSTRFIKLTWRTPASDPHGDNLTYSVFYTKEGIARERVENTSHPGEMQV 70
Query: 73 TVPGLIEGETYQFQVRAVNAAGPGEASKPT 102
T+ L+ Y F+V A N G GE+S P
Sbjct: 71 TIQNLMPATVYIFRVMAQNKHGSGESSAPL 100
|
| >d1x5fa1 b.1.2.1 (A:8-114) Neogenin {Human (Homo sapiens) [TaxId: 9606]} Length = 107 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Neogenin species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.9 bits (92), Expect = 8e-05
Identities = 10/48 (20%), Positives = 17/48 (35%), Gaps = 1/48 (2%)
Query: 448 DKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATG 495
PS P+ + S ++ L+W+ P D Y V +
Sbjct: 9 PLPSAPRD-VVASLVSTRFIKLTWRTPASDPHGDNLTYSVFYTKEGIA 55
|
| >d1wfna1 b.1.2.1 (A:8-113) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 106 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Sidekick 2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 78.7 bits (193), Expect = 2e-18
Identities = 22/105 (20%), Positives = 35/105 (33%)
Query: 5 VLIKNPFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVV 64
L++ D PG L ++ + + W P G + + N
Sbjct: 2 QLVRTHEDVPGPVGHLSFSEILDTSLKVSWQEPGEKNGILTGYRISWEEYNRTNTRVTHY 61
Query: 65 VPAGETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKP 109
+P V GL TY +V A+ + G G+ S T P
Sbjct: 62 LPNVTLEYRVTGLTALTTYTIEVAAMTSKGQGQVSASTISSGVPP 106
|
| >d1wfna1 b.1.2.1 (A:8-113) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 106 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Sidekick 2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.0 bits (90), Expect = 1e-04
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Query: 448 DKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYE 491
D P P L S+I S +SW+ P + G +T Y + E
Sbjct: 9 DVPGPVG-HLSFSEILDTSLKVSWQEPGEKNG-ILTGYRISWEE 50
|
| >d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} Length = 101 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Telokin species: Human (Homo sapiens) [TaxId: 9606]
Score = 77.2 bits (189), Expect = 4e-18
Identities = 31/102 (30%), Positives = 45/102 (44%), Gaps = 3/102 (2%)
Query: 354 PKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIY 413
P+I D V AGE + +G T W ++ +K E SEN +
Sbjct: 1 PQIIQFP--EDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKL 58
Query: 414 RNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQG 455
+A++ G YT+ + N +GS A + VVDKP PP G
Sbjct: 59 TILAARQ-EHCGCYTLLVENKLGSRQAQVNLTVVDKPDPPAG 99
|
| >d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} Length = 101 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Telokin species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.3 bits (114), Expect = 6e-08
Identities = 14/43 (32%), Positives = 21/43 (48%)
Query: 281 SLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTG 323
L I + ++ G Y + +N G A + + VV KP PP G
Sbjct: 57 KLTILAARQEHCGCYTLLVENKLGSRQAQVNLTVVDKPDPPAG 99
|
| >d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} Length = 101 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Telokin species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.5 bits (99), Expect = 9e-06
Identities = 14/64 (21%), Positives = 27/64 (42%)
Query: 166 SEPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATAS 225
+ W + Q V+ +++ + L I + G Y+L +EN LG+ A
Sbjct: 26 GTQPITCTWMKFRKQIQESEHMKVENSENGSKLTILAARQEHCGCYTLLVENKLGSRQAQ 85
Query: 226 AHVT 229
++T
Sbjct: 86 VNLT 89
|
| >d1wfoa1 b.1.2.1 (A:8-124) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 117 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Sidekick 2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 78.0 bits (191), Expect = 5e-18
Identities = 24/100 (24%), Positives = 37/100 (37%), Gaps = 1/100 (1%)
Query: 4 SVLIKNPFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKD-KTGNWEKA 62
+L + D PG P + + V L W PP + G + + + T N
Sbjct: 11 PILERTLDDVPGPPMGILFPEVRTTSVRLIWQPPAAPNGIILAYQITHRLNTTTANTATV 70
Query: 63 VVVPAGETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPT 102
V+ T GL Y F++ A G GEA++
Sbjct: 71 EVLAPSARQYTATGLKPESVYLFRITAQTRKGWGEAAEAL 110
|
| >d1wfoa1 b.1.2.1 (A:8-124) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 117 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Sidekick 2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.1 bits (85), Expect = 8e-04
Identities = 12/48 (25%), Positives = 20/48 (41%), Gaps = 1/48 (2%)
Query: 448 DKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATG 495
D P PP G + ++ S L W+PP G + + + + T
Sbjct: 19 DVPGPPMG-ILFPEVRTTSVRLIWQPPAAPNGIILAYQITHRLNTTTA 65
|
| >d1x3da1 b.1.2.1 (A:8-112) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} Length = 105 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) species: Human (Homo sapiens) [TaxId: 9606]
Score = 77.2 bits (189), Expect = 6e-18
Identities = 24/93 (25%), Positives = 36/93 (38%), Gaps = 1/93 (1%)
Query: 10 PFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVVVPAGE 69
EP P + K+ + LQW P SD GS I +V+E + GN E +
Sbjct: 7 LSCEPDIPNPPRIANRTKNSLTLQWKAP-SDNGSKIQNFVLEWDEGKGNGEFCQCYMGSQ 65
Query: 70 TSCTVPGLIEGETYQFQVRAVNAAGPGEASKPT 102
+ L +F++ A N G S+
Sbjct: 66 KQFKITKLSPAMGCKFRLSARNDYGTSGFSEEV 98
|
| >d1x3da1 b.1.2.1 (A:8-112) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} Length = 105 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.2 bits (85), Expect = 7e-04
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 448 DKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYES 492
+P P P +++ T S +L WK P D GS I N+V+E E
Sbjct: 9 CEPDIPNPP-RIANRTKNSLTLQWKAP-SDNGSKIQNFVLEWDEG 51
|
| >d1wf5a1 b.1.2.1 (A:8-115) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 108 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Sidekick 2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 77.2 bits (189), Expect = 7e-18
Identities = 33/97 (34%), Positives = 47/97 (48%), Gaps = 4/97 (4%)
Query: 12 DEPGKPTDLEAT--DWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGN-WEKAVVVPAG 68
P P AT ++ ++L WT P DG SP+ Y++EM + V
Sbjct: 9 QLPHAPEHPVATLSTVERRAINLTWTKP-FDGNSPLIRYILEMSENNAPWTVLLASVDPK 67
Query: 69 ETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPI 105
TS TV GL+ +YQF++ AVN G G+ SK T +
Sbjct: 68 ATSVTVKGLVPARSYQFRLCAVNDVGKGQFSKDTERV 104
|
| >d1wf5a1 b.1.2.1 (A:8-115) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 108 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Sidekick 2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.8 bits (118), Expect = 3e-08
Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 441 SCKVYVVDKPSPPQGP-LDVSDITPESCSLSWKPPLDDGGSPITNYVVEKY 490
S + V P P+ P +S + + +L+W P DG SP+ Y++E
Sbjct: 2 SAHLRVRQLPHAPEHPVATLSTVERRAINLTWTKP-FDGNSPLIRYILEMS 51
|
| >d1wf5a1 b.1.2.1 (A:8-115) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 108 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Sidekick 2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.2 bits (93), Expect = 5e-05
Identities = 11/44 (25%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Query: 310 IEVVVVSKPGPPTGP-IDYTTVTPESVSMSWKPPVDDGGTPITG 352
+ V P P P +TV +++++W P DG +P+
Sbjct: 3 AHLRVRQLPHAPEHPVATLSTVERRAINLTWTKP-FDGNSPLIR 45
|
| >d1uema_ b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 117 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: KIAA1568 protein species: Human (Homo sapiens) [TaxId: 9606]
Score = 76.5 bits (187), Expect = 1e-17
Identities = 30/99 (30%), Positives = 46/99 (46%), Gaps = 2/99 (2%)
Query: 12 DEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWE-KAVVVPAGET 70
D PG P+ + TD K+ V L W P + G P + Y++E ++ + + V T
Sbjct: 14 DLPGPPSKPQVTDVTKNSVTLSWQPG-TPGTLPASAYIIEAFSQSVSNSWQTVANHVKTT 72
Query: 71 SCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKP 109
TV GL Y F VRA+N G + S + P+ +
Sbjct: 73 LYTVRGLRPNTIYLFMVRAINPQGLSDPSPMSDPVRTQD 111
|
| >d1uema_ b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 117 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: KIAA1568 protein species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.0 bits (108), Expect = 6e-07
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 436 GSDSASCKVYVVDKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKY 490
S S+ + D P PP P V+D+T S +LSW+P G P + Y++E +
Sbjct: 2 SSGSSGKNYDLSDLPGPPSKP-QVTDVTKNSVTLSWQPG-TPGTLPASAYIIEAF 54
|
| >d1x5ga1 b.1.2.1 (A:8-110) Neogenin {Human (Homo sapiens) [TaxId: 9606]} Length = 103 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Neogenin species: Human (Homo sapiens) [TaxId: 9606]
Score = 75.6 bits (185), Expect = 2e-17
Identities = 27/98 (27%), Positives = 41/98 (41%), Gaps = 3/98 (3%)
Query: 5 VLIKNPFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVV 64
V + PG +L A + + W P+S G I Y + +K + E+ V
Sbjct: 2 VETQPEVQLPGPAPNLRAYAASPTSITVTWETPVSGNG-EIQNYKLYYMEKGTDKEQDVD 60
Query: 65 VPAGETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPT 102
V S T+ GL + Y F+V A N GPG ++
Sbjct: 61 VS--SHSYTINGLKKYTEYSFRVVAYNKHGPGVSTPDV 96
|
| >d1x5ga1 b.1.2.1 (A:8-110) Neogenin {Human (Homo sapiens) [TaxId: 9606]} Length = 103 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Neogenin species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.9 bits (95), Expect = 3e-05
Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Query: 447 VDKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYE 491
V P P L +P S +++W+ P+ G I NY + E
Sbjct: 8 VQLPGPAPN-LRAYAASPTSITVTWETPVSGNG-EIQNYKLYYME 50
|
| >d2dn7a1 b.1.2.1 (A:8-101) Receptor-type tyrosine-protein phosphatase F, PTPRF {Human (Homo sapiens) [TaxId: 9606]} Length = 94 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Receptor-type tyrosine-protein phosphatase F, PTPRF species: Human (Homo sapiens) [TaxId: 9606]
Score = 74.5 bits (182), Expect = 4e-17
Identities = 26/90 (28%), Positives = 39/90 (43%), Gaps = 2/90 (2%)
Query: 14 PGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVVVPAGETSCT 73
PG+PT + + + LQW PP G + GY ++ + + T
Sbjct: 1 PGRPT-MMISTTAMNTALLQWHPPKELPG-ELLGYRLQYCRADEARPNTIDFGKDDQHFT 58
Query: 74 VPGLIEGETYQFQVRAVNAAGPGEASKPTA 103
V GL +G TY F++ A N AG GE +
Sbjct: 59 VTGLHKGTTYIFRLAAKNRAGLGEEFEKEI 88
|
| >d2dn7a1 b.1.2.1 (A:8-101) Receptor-type tyrosine-protein phosphatase F, PTPRF {Human (Homo sapiens) [TaxId: 9606]} Length = 94 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Receptor-type tyrosine-protein phosphatase F, PTPRF species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.7 bits (89), Expect = 1e-04
Identities = 9/46 (19%), Positives = 17/46 (36%), Gaps = 3/46 (6%)
Query: 450 PSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATG 495
P P + +S + L W PP + G + Y ++ +
Sbjct: 1 PGRPT--MMISTTAMNTALLQWHPPKELPG-ELLGYRLQYCRADEA 43
|
| >d2dn7a1 b.1.2.1 (A:8-101) Receptor-type tyrosine-protein phosphatase F, PTPRF {Human (Homo sapiens) [TaxId: 9606]} Length = 94 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Receptor-type tyrosine-protein phosphatase F, PTPRF species: Human (Homo sapiens) [TaxId: 9606]
Score = 35.6 bits (81), Expect = 0.002
Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 3/35 (8%)
Query: 318 PGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITG 352
PG PT I +T + + W PP + G + G
Sbjct: 1 PGRPTMMI--STTAMNTALLQWHPPKELPG-ELLG 32
|
| >d2crza1 b.1.2.1 (A:8-104) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} Length = 97 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) species: Human (Homo sapiens) [TaxId: 9606]
Score = 73.7 bits (180), Expect = 8e-17
Identities = 34/95 (35%), Positives = 45/95 (47%), Gaps = 2/95 (2%)
Query: 14 PGKPTDLEATDWDKDH-VDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVVVPAGETSC 72
PG K + L+W PP+ DGGSPI+ Y VEM + + V E C
Sbjct: 2 PGPCLPPRLQGRPKAKEIQLRWGPPLVDGGSPISCYSVEMSPIEKDEPR-EVYQGSEVEC 60
Query: 73 TVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVA 107
TV L+ G+TY F++RA N G G S+ A
Sbjct: 61 TVSSLLPGKTYSFRLRAANKMGFGPFSEKCDITTA 95
|
| >d2crza1 b.1.2.1 (A:8-104) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} Length = 97 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.1 bits (124), Expect = 3e-09
Identities = 17/46 (36%), Positives = 19/46 (41%)
Query: 450 PSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATG 495
P P P + L W PPL DGGSPI+ Y VE
Sbjct: 2 PGPCLPPRLQGRPKAKEIQLRWGPPLVDGGSPISCYSVEMSPIEKD 47
|
| >d2crza1 b.1.2.1 (A:8-104) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} Length = 97 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.8 bits (110), Expect = 2e-07
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 318 PGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITG 352
PGP P + + + W PP+ DGG+PI+
Sbjct: 2 PGPCLPPRLQGRPKAKEIQLRWGPPLVDGGSPISC 36
|
| >d1x5za1 b.1.2.1 (A:8-109) Receptor-type tyrosine-protein phosphatase delta, PTPRD {Human (Homo sapiens) [TaxId: 9606]} Length = 102 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Receptor-type tyrosine-protein phosphatase delta, PTPRD species: Human (Homo sapiens) [TaxId: 9606]
Score = 73.2 bits (179), Expect = 1e-16
Identities = 26/98 (26%), Positives = 43/98 (43%), Gaps = 4/98 (4%)
Query: 5 VLIKNPFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVV 64
+ + PG+P + +A + + L WTPP SD I Y + KD E+ +
Sbjct: 2 IQVITQTGVPGQPLNFKAEPESETSILLSWTPPRSD---TIANYELVYKDGEHGEEQRIT 58
Query: 65 VPAGETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPT 102
+ G TS + GL Y F++ A + G G ++
Sbjct: 59 IEPG-TSYRLQGLKPNSLYYFRLAARSPQGLGASTAEI 95
|
| >d1x5za1 b.1.2.1 (A:8-109) Receptor-type tyrosine-protein phosphatase delta, PTPRD {Human (Homo sapiens) [TaxId: 9606]} Length = 102 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Receptor-type tyrosine-protein phosphatase delta, PTPRD species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.2 bits (83), Expect = 0.001
Identities = 13/68 (19%), Positives = 28/68 (41%), Gaps = 2/68 (2%)
Query: 311 EVVVVSKPGPPTGPID--YTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVL 368
++ V+++ G P P++ + S+ +SW PP D K + +T+
Sbjct: 1 DIQVITQTGVPGQPLNFKAEPESETSILLSWTPPRSDTIANYELVYKDGEHGEEQRITIE 60
Query: 369 AGEEFTIT 376
G + +
Sbjct: 61 PGTSYRLQ 68
|
| >d1wisa1 b.1.2.1 (A:8-118) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 111 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Sidekick 2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 73.4 bits (179), Expect = 1e-16
Identities = 27/103 (26%), Positives = 37/103 (35%), Gaps = 5/103 (4%)
Query: 8 KNPFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWE-----KA 62
P + PG PT+L ++ V LQ+ P S V G E
Sbjct: 5 GVPPELPGPPTNLGISNIGPRSVTLQFRPGYDGKTSISRWLVEAQVGVVGEGEEWLLIHQ 64
Query: 63 VVVPAGETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPI 105
+ S VP L Y F++R VN G S+P+ I
Sbjct: 65 LSNEPDARSMEVPDLNPFTCYSFRMRQVNIVGTSPPSQPSRKI 107
|
| >d1n26a3 b.1.2.1 (A:196-299) Interleukin-6 receptor alpha chain, domains 2 and 3 {Human (Homo sapiens) [TaxId: 9606]} Length = 104 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Interleukin-6 receptor alpha chain, domains 2 and 3 species: Human (Homo sapiens) [TaxId: 9606]
Score = 72.4 bits (176), Expect = 3e-16
Identities = 15/100 (15%), Positives = 34/100 (34%), Gaps = 3/100 (3%)
Query: 13 EPGKPTDLEATDWDK--DHVDLQWTP-PISDGGSPITGYVVEMKDKTGNWEKAVVVPAGE 69
+P P ++ T + + + W + + + + + +V +
Sbjct: 1 QPDPPANITVTAVARNPRWLSVTWQDPHSWNSSFYRLRFELRYRAERSKTFTTWMVKDLQ 60
Query: 70 TSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKP 109
C + G + Q+RA G GE S+ + + P
Sbjct: 61 HHCVIHDAWSGLRHVVQLRAQEEFGQGEWSEWSPEAMGTP 100
|
| >d1x5xa1 b.1.2.1 (A:8-103) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} Length = 96 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) species: Human (Homo sapiens) [TaxId: 9606]
Score = 71.6 bits (174), Expect = 5e-16
Identities = 21/89 (23%), Positives = 35/89 (39%)
Query: 14 PGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVVVPAGETSCT 73
P P T + LQW+ P Y++EM+++T + + + T
Sbjct: 1 PSMPASPVLTKAGITWLSLQWSKPSGTPSDEGISYILEMEEETSGYGFKPKYDGEDLAYT 60
Query: 74 VPGLIEGETYQFQVRAVNAAGPGEASKPT 102
V L Y+F+V A N+ G S+
Sbjct: 61 VKNLRRSTKYKFKVIAYNSEGKSNPSEVV 89
|
| >d1va9a1 b.1.2.1 (A:8-116) Down syndrome cell adhesion molecule-like protein 1, DSCAML1 {Human (Homo sapiens) [TaxId: 9606]} Length = 109 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Down syndrome cell adhesion molecule-like protein 1, DSCAML1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 68.8 bits (167), Expect = 5e-15
Identities = 18/95 (18%), Positives = 31/95 (32%), Gaps = 6/95 (6%)
Query: 14 PGKPTDLEATDWDKDHVDLQWTPPISD-GGSPITGYVVEMKDKTGN-----WEKAVVVPA 67
G P D+ + + W P + I GY + ++ + +
Sbjct: 9 DGPPMDVTLQPVTSQSIQVTWKAPKKELQNGVIRGYQIGYRENSPGSNGQYSIVEMKATG 68
Query: 68 GETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPT 102
T+ L + Y V+A N AG G +S
Sbjct: 69 DSEVYTLDNLKKFAQYGVVVQAFNRAGTGPSSSEI 103
|
| >d1va9a1 b.1.2.1 (A:8-116) Down syndrome cell adhesion molecule-like protein 1, DSCAML1 {Human (Homo sapiens) [TaxId: 9606]} Length = 109 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Down syndrome cell adhesion molecule-like protein 1, DSCAML1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.7 bits (89), Expect = 2e-04
Identities = 9/44 (20%), Positives = 17/44 (38%), Gaps = 1/44 (2%)
Query: 448 DKPSPPQGPLDVSDITPESCSLSWKPPL-DDGGSPITNYVVEKY 490
P P + + +T +S ++WK P + I Y +
Sbjct: 6 AAPDGPPMDVTLQPVTSQSIQVTWKAPKKELQNGVIRGYQIGYR 49
|
| >d1fnaa_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 91 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin, different Fn3 modules species: Human (Homo sapiens) [TaxId: 9606]
Score = 67.9 bits (165), Expect = 7e-15
Identities = 22/91 (24%), Positives = 33/91 (36%), Gaps = 5/91 (5%)
Query: 19 DLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGN-WEKAVVVPAGETSCTVPGL 77
DLE + + W P + Y + + GN + VP +++ T+ GL
Sbjct: 2 DLEVVAATPTSLLISWDAPAV----TVRYYRITYGETGGNSPVQEFTVPGSKSTATISGL 57
Query: 78 IEGETYQFQVRAVNAAGPGEASKPTAPIVAK 108
G Y V AV G AS I +
Sbjct: 58 KPGVDYTITVYAVTGRGDSPASSKPISINYR 88
|
| >d2ic2a1 b.1.2.1 (A:466-572) Hedgehog receptor iHog {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 107 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Hedgehog receptor iHog species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Score = 68.1 bits (165), Expect = 1e-14
Identities = 23/106 (21%), Positives = 38/106 (35%), Gaps = 14/106 (13%)
Query: 17 PTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTG-------------NWEKAV 63
PT T + V L+W P +DG PI + V+ + K
Sbjct: 3 PTPPNVTRLSDESVMLRWMVPRNDG-LPIVIFKVQYRMVGKRKNWQTTNDNIPYGKPKWN 61
Query: 64 VVPAGETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKP 109
+ +V L TY+F++ AV + + S +A +P
Sbjct: 62 SELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKESNTSAKFYLQP 107
|
| >d2ic2a1 b.1.2.1 (A:466-572) Hedgehog receptor iHog {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 107 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Hedgehog receptor iHog species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Score = 35.4 bits (80), Expect = 0.003
Identities = 6/39 (15%), Positives = 12/39 (30%)
Query: 221 TATASAHVTGTEFTDNNVHEGKAYEYRVSAVNAAGTEKP 259
S + ++ Y +R+ AV + K
Sbjct: 58 PKWNSELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKE 96
|
| >d1j8ka_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 94 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin, different Fn3 modules species: Human (Homo sapiens) [TaxId: 9606]
Score = 67.6 bits (164), Expect = 1e-14
Identities = 19/88 (21%), Positives = 27/88 (30%), Gaps = 3/88 (3%)
Query: 16 KPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVVVPAGETSCTVP 75
+P L TD D D + + W P Y G E E + +
Sbjct: 4 RPKGLAFTDVDVDSIKIAWESPQGQVSRYRVTYSSPED---GIHELFPAPDGEEDTAELQ 60
Query: 76 GLIEGETYQFQVRAVNAAGPGEASKPTA 103
GL G Y V A++ + T
Sbjct: 61 GLRPGSEYTVSVVALHDDMESQPLIGTQ 88
|
| >d1cd9b2 b.1.2.1 (B:108-213) Granulocyte colony-stimulating factor (GC-SF) receptor {Mouse (Mus musculus) [TaxId: 10090]} Length = 106 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Granulocyte colony-stimulating factor (GC-SF) receptor species: Mouse (Mus musculus) [TaxId: 10090]
Score = 67.7 bits (164), Expect = 1e-14
Identities = 15/102 (14%), Positives = 30/102 (29%), Gaps = 1/102 (0%)
Query: 9 NPFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWE-KAVVVPA 67
P + + L W P + G +P+
Sbjct: 3 EPPMLQALDIGPDVVSHQPGCLWLSWKPWKPSEYMEQECELRYQPQLKGANWTLVFHLPS 62
Query: 68 GETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKP 109
+ + GL + Y Q+R + ++ PG S + + +P
Sbjct: 63 SKDQFELCGLHQAPVYTLQMRCIRSSLPGFWSPWSPGLQLRP 104
|
| >d1fnfa3 b.1.2.1 (A:1327-1415) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 89 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin, different Fn3 modules species: Human (Homo sapiens) [TaxId: 9606]
Score = 66.0 bits (160), Expect = 3e-14
Identities = 18/82 (21%), Positives = 30/82 (36%), Gaps = 5/82 (6%)
Query: 17 PTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDK-TGNWEKAVVVPAGETSCTVP 75
PT ++ +D + + W P + ITGY + + + VP S T+
Sbjct: 4 PTGIDFSDITANSFTVHWIAP----RATITGYRIRHHPEHFSGRPREDRVPHSRNSITLT 59
Query: 76 GLIEGETYQFQVRAVNAAGPGE 97
L G Y + A+N
Sbjct: 60 NLTPGTEYVVSIVALNGREESP 81
|
| >d1fyhb1 b.1.2.1 (B:12-109) Interferon-gamma receptor alpha chain {Human (Homo sapiens) [TaxId: 9606]} Length = 98 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Interferon-gamma receptor alpha chain species: Human (Homo sapiens) [TaxId: 9606]
Score = 66.1 bits (160), Expect = 4e-14
Identities = 11/94 (11%), Positives = 28/94 (29%), Gaps = 2/94 (2%)
Query: 16 KPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGN-WEKAVVVPAGETSCTV 74
PT++ ++ + + + W I T V K + + + + +
Sbjct: 3 TPTNVTIESYNMNPI-VYWEYQIMPQVPVFTVEVKNYGVKNSEWIDACINISHHYCNISD 61
Query: 75 PGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAK 108
+ +V+A +K V +
Sbjct: 62 HVGDPSNSLWVRVKARVGQKESAYAKSEEFAVCR 95
|
| >d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]} Length = 97 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fibroblast growth factor receptor, FGFR species: Human (Homo sapiens), FGFR2a [TaxId: 9606]
Score = 66.0 bits (160), Expect = 4e-14
Identities = 28/97 (28%), Positives = 38/97 (39%), Gaps = 2/97 (2%)
Query: 353 APKITSDLSI--RDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQ 410
AP T+ + R V A P G P PT W NG E + RI NQ
Sbjct: 1 APYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQ 60
Query: 411 TIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVV 447
+ +D G+YT + N GS + + + VV
Sbjct: 61 HWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVV 97
|
| >d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]} Length = 97 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fibroblast growth factor receptor, FGFR species: Human (Homo sapiens), FGFR2a [TaxId: 9606]
Score = 35.5 bits (81), Expect = 0.002
Identities = 11/40 (27%), Positives = 18/40 (45%)
Query: 276 TSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVV 315
+ SL +++ V D G Y +N+YG + VV
Sbjct: 58 RNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVV 97
|
| >d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]} Length = 97 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fibroblast growth factor receptor, FGFR species: Human (Homo sapiens), FGFR2a [TaxId: 9606]
Score = 35.2 bits (80), Expect = 0.002
Identities = 13/57 (22%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Query: 174 WSINGQVCQIGGRADVQTTKSE-TVLDIPFCSRSDTGHYSLTLENNLGTATASAHVT 229
W NG+ + R +++ L + SD G+Y+ +EN G+ + H+
Sbjct: 39 WLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLD 95
|
| >d1uena_ b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 125 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: KIAA0343 protein species: Human (Homo sapiens) [TaxId: 9606]
Score = 66.8 bits (162), Expect = 4e-14
Identities = 20/98 (20%), Positives = 32/98 (32%), Gaps = 9/98 (9%)
Query: 14 PGKPTDLEATDWDKDHVDLQWTP-PISDGGSPITGYVVEMKDKTG--------NWEKAVV 64
P ++ + ++ W P P+ + GY + +K +
Sbjct: 15 MVAPGNVRVNVVNSTLAEVHWDPVPLKSIRGHLQGYRIYYWKTQSSSKRNRRHIEKKILT 74
Query: 65 VPAGETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPT 102
+T +PGL Y VR VN G G AS
Sbjct: 75 FQGSKTHGMLPGLEPFSHYTLNVRVVNGKGEGPASPDR 112
|
| >d2crma1 b.1.2.1 (A:8-114) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} Length = 107 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) species: Human (Homo sapiens) [TaxId: 9606]
Score = 66.1 bits (160), Expect = 5e-14
Identities = 21/92 (22%), Positives = 35/92 (38%), Gaps = 1/92 (1%)
Query: 12 DEPGKPTDLEAT-DWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVVVPAGET 70
D+PG P + W PP +GG+ I YVVEM + + + ++
Sbjct: 9 DKPGIPVKPSVKGKIHSHSFKITWDPPKDNGGATINKYVVEMAEGSNGNKWEMIYSGATR 68
Query: 71 SCTVPGLIEGETYQFQVRAVNAAGPGEASKPT 102
L G Y+ +V ++ G S+
Sbjct: 69 EHLCDRLNPGCFYRLRVYCISDGGQSAVSESL 100
|
| >d2crma1 b.1.2.1 (A:8-114) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} Length = 107 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.3 bits (106), Expect = 1e-06
Identities = 18/45 (40%), Positives = 22/45 (48%)
Query: 446 VVDKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKY 490
DKP P P I S ++W PP D+GG+ I YVVE
Sbjct: 7 CPDKPGIPVKPSVKGKIHSHSFKITWDPPKDNGGATINKYVVEMA 51
|
| >d2crma1 b.1.2.1 (A:8-114) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} Length = 107 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.9 bits (84), Expect = 8e-04
Identities = 13/38 (34%), Positives = 17/38 (44%)
Query: 314 VVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPIT 351
KPG P P + S ++W PP D+GG I
Sbjct: 7 CPDKPGIPVKPSVKGKIHSHSFKITWDPPKDNGGATIN 44
|
| >d1qg3a1 b.1.2.1 (A:1126-1217) Integrin beta-4 subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 92 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Integrin beta-4 subunit species: Human (Homo sapiens) [TaxId: 9606]
Score = 65.7 bits (159), Expect = 5e-14
Identities = 19/89 (21%), Positives = 32/89 (35%), Gaps = 4/89 (4%)
Query: 13 EPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVVVPAGETSC 72
+ G P + A + W PP GY V+ + + +A ++ + S
Sbjct: 1 DLGAPQNPNAKAAGSRKIHFNWLPPSGK----PMGYRVKYWIQGDSESEAHLLDSKVPSV 56
Query: 73 TVPGLIEGETYQFQVRAVNAAGPGEASKP 101
+ L Y+ +V A A G G S
Sbjct: 57 ELTNLYPYCDYEMKVCAYGAQGEGPYSSL 85
|
| >d1qr4a1 b.1.2.1 (A:1-87) Tenascin {Chicken (Gallus gallus) [TaxId: 9031]} Length = 87 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Tenascin species: Chicken (Gallus gallus) [TaxId: 9031]
Score = 65.3 bits (158), Expect = 5e-14
Identities = 16/87 (18%), Positives = 29/87 (33%), Gaps = 5/87 (5%)
Query: 17 PTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVVVPAGETSCTVPG 76
P DLE +D + + L+W P++ + + +P TS + G
Sbjct: 3 PKDLEVSDPTETTLSLRWRRPVAKFDRYRL-----TYVSPSGKKNEMEIPVDSTSFILRG 57
Query: 77 LIEGETYQFQVRAVNAAGPGEASKPTA 103
L G Y + A + +
Sbjct: 58 LDAGTEYTISLVAEKGRHKSKPTTIKG 84
|
| >d1tdqa2 b.1.2.1 (A:94-185) Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 92 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Tenascin species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 65.3 bits (158), Expect = 6e-14
Identities = 14/87 (16%), Positives = 27/87 (31%), Gaps = 1/87 (1%)
Query: 17 PTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVVVPAGETSCTVPG 76
P +L +DL+W ++ Y ++ + T T+
Sbjct: 4 PKNLRVGSRTATSLDLEWDNSEAEAQEYKVVYSTLAGEQY-HEVLVPKGIGPTTKTTLTD 62
Query: 77 LIEGETYQFQVRAVNAAGPGEASKPTA 103
L+ G Y + AV + + A
Sbjct: 63 LVPGTEYGVGISAVMNSKQSIPATMNA 89
|
| >d1cfba1 b.1.2.1 (A:610-709) Neuroglian, two amino proximal Fn3 repeats {Drosophila melanogaster [TaxId: 7227]} Length = 100 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Neuroglian, two amino proximal Fn3 repeats species: Drosophila melanogaster [TaxId: 7227]
Score = 65.4 bits (158), Expect = 7e-14
Identities = 19/99 (19%), Positives = 28/99 (28%), Gaps = 4/99 (4%)
Query: 12 DEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVV--VPAGE 69
D P P T D ++ W + SPI Y ++
Sbjct: 4 DVPNAPKLTGITC-QADKAEIHWEQQGDNR-SPILHYTIQFNTSFTPASWDAAYEKVPNT 61
Query: 70 TSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAK 108
S V + Y F+V A N G S + +
Sbjct: 62 DSSFVVQMSPWANYTFRVIAFNKIGASPPSAHSDSCTTQ 100
|
| >d1qr4a2 b.1.2.1 (A:88-175) Tenascin {Chicken (Gallus gallus) [TaxId: 9031]} Length = 88 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Tenascin species: Chicken (Gallus gallus) [TaxId: 9031]
Score = 64.9 bits (157), Expect = 7e-14
Identities = 20/84 (23%), Positives = 31/84 (36%), Gaps = 4/84 (4%)
Query: 15 GKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVVVPAGETSCTV 74
G P + +D ++ + WTPP S + Y V TG V V +T +
Sbjct: 2 GSPKGISFSDITENSATVSWTPPRS----RVDSYRVSYVPITGGTPNVVTVDGSKTRTKL 57
Query: 75 PGLIEGETYQFQVRAVNAAGPGEA 98
L+ G Y + +V E
Sbjct: 58 VKLVPGVDYNVNIISVKGFEESEP 81
|
| >d1fnha3 b.1.2.1 (A:183-271) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 89 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin, different Fn3 modules species: Human (Homo sapiens) [TaxId: 9606]
Score = 64.9 bits (157), Expect = 8e-14
Identities = 20/82 (24%), Positives = 32/82 (39%), Gaps = 5/82 (6%)
Query: 17 PTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKT-GNWEKAVVVPAGETSCTVP 75
P++L + + + W PP + ITGY+++ + E G T T+
Sbjct: 4 PSNLRFLATTPNSLLVSWQPPRA----RITGYIIKYEKPGSPPREVVPRPRPGVTEATIT 59
Query: 76 GLIEGETYQFQVRAVNAAGPGE 97
GL G Y V A+ E
Sbjct: 60 GLEPGTEYTIYVIALKNNQKSE 81
|
| >d1iarb2 b.1.2.1 (B:97-197) Interleukin-4 receptor alpha chain {Human (Homo sapiens) [TaxId: 9606]} Length = 101 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Interleukin-4 receptor alpha chain species: Human (Homo sapiens) [TaxId: 9606]
Score = 65.1 bits (157), Expect = 9e-14
Identities = 17/97 (17%), Positives = 27/97 (27%), Gaps = 5/97 (5%)
Query: 14 PGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWE-----KAVVVPAG 68
P P +L D + L W+ P + + N V
Sbjct: 2 PRAPGNLTVHTNVSDTLLLTWSNPYPPDNYLYNHLTYAVNIWSENDPADFRIYNVTYLEP 61
Query: 69 ETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPI 105
L G +Y+ +VRA A S+ +
Sbjct: 62 SLRIAASTLKSGISYRARVRAWAQAYNTTWSEWSPST 98
|
| >d2d9qb2 b.1.2.1 (B:204-308) Granulocyte colony-stimulating factor (GC-SF) receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 105 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Granulocyte colony-stimulating factor (GC-SF) receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 65.1 bits (157), Expect = 1e-13
Identities = 16/103 (15%), Positives = 28/103 (27%), Gaps = 1/103 (0%)
Query: 9 NPFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEM-KDKTGNWEKAVVVPA 67
P EA + L W P + + +W +P
Sbjct: 2 EPPMLRTMDPSPEAAPPQAGCLQLSWEPWQPGLHINQKCELRHKPQRGEASWALVGPLPL 61
Query: 68 GETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPK 110
+ GL+ Y Q+R + PG S + + +
Sbjct: 62 EALQYELCGLLPATAYTLQIRCIRWPLPGHWSDWSPSLELRTT 104
|
| >d1bpva_ b.1.2.1 (A:) Type I titin module {Human (Homo sapiens) [TaxId: 9606]} Length = 104 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Type I titin module species: Human (Homo sapiens) [TaxId: 9606]
Score = 64.2 bits (155), Expect = 2e-13
Identities = 34/97 (35%), Positives = 44/97 (45%), Gaps = 2/97 (2%)
Query: 14 PGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKT-GNWEKAVVVPAGETSC 72
P + + V L+W P GG IT Y+VE +D G W KA E
Sbjct: 3 IDPPGKPVPLNITRHTVTLKWAKPEYTGGFKITSYIVEKRDLPNGRWLKANFSNILENEF 62
Query: 73 TVPGLIEGETYQFQVRAVNAAGP-GEASKPTAPIVAK 108
TV GL E Y+F+V A NAAG S+P+ I +
Sbjct: 63 TVSGLTEDAAYEFRVIAKNAAGAISPPSEPSDAITCR 99
|
| >d1x5aa1 b.1.2.1 (A:8-101) Ephrin type-A receptor 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 94 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Ephrin type-A receptor 1 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 63.8 bits (154), Expect = 2e-13
Identities = 17/89 (19%), Positives = 30/89 (33%), Gaps = 4/89 (4%)
Query: 13 EPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVVVPAGETSC 72
E L+ + ++L W Y + + ++ W + V+ P
Sbjct: 2 ESLSGLSLKLVKKEPRQLELTWAGSRPRNPGGNLSYELHVLNQDEEWHQMVLEP----RV 57
Query: 73 TVPGLIEGETYQFQVRAVNAAGPGEASKP 101
+ L TY +VR + GPG S
Sbjct: 58 LLTKLQPDTTYIVRVRTLTPLGPGPFSPD 86
|
| >d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 98 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Titin species: Human (Homo sapiens), different modules [TaxId: 9606]
Score = 63.7 bits (154), Expect = 2e-13
Identities = 25/97 (25%), Positives = 38/97 (39%), Gaps = 2/97 (2%)
Query: 353 APKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTI 412
APKI + + TV G + V G+P P W NG ++ RI + E+
Sbjct: 4 APKIFERI--QSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVC 61
Query: 413 YRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDK 449
DS S ++ +N G S+ + V K
Sbjct: 62 ELVIRDVTGEDSASIMVKAINIAGETSSHAFLLVQAK 98
|
| >d1ueya_ b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 127 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: KIAA0343 protein species: Human (Homo sapiens) [TaxId: 9606]
Score = 64.2 bits (155), Expect = 3e-13
Identities = 24/101 (23%), Positives = 34/101 (33%), Gaps = 1/101 (0%)
Query: 10 PFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEM-KDKTGNWEKAVVVPAG 68
+D P P DLE TD V L WTP + + +G
Sbjct: 13 VYDVPNPPFDLELTDQLDKSVQLSWTPGDDNNSPITKFIIEYEDAMHKPGLWHHQTEVSG 72
Query: 69 ETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKP 109
+ L Y F+V AVN+ G S+ + + K
Sbjct: 73 TQTTAQLNLSPYVNYSFRVMAVNSIGKSLPSEASEQYLTKA 113
|
| >d1qg3a2 b.1.2.1 (A:1218-1320) Integrin beta-4 subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 103 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Integrin beta-4 subunit species: Human (Homo sapiens) [TaxId: 9606]
Score = 63.6 bits (153), Expect = 3e-13
Identities = 21/103 (20%), Positives = 33/103 (32%), Gaps = 5/103 (4%)
Query: 12 DEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKD-----KTGNWEKAVVVP 66
+ P +P L L W P G V G +K +V
Sbjct: 1 EVPSEPGRLAFNVVSSTVTQLSWAEPAETNGEITAYEVCYGLVNDDNRPIGPMKKVLVDN 60
Query: 67 AGETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKP 109
+ L E + Y++ V+A N AG G + + +P
Sbjct: 61 PKNRMLLIENLRESQPYRYTVKARNGAGWGPEREAIINLATQP 103
|
| >d2vkwa2 b.1.2.1 (A:601-693) Neural cell adhesion molecule 1, NCAM {Human (Homo sapiens) [TaxId: 9606]} Length = 93 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Neural cell adhesion molecule 1, NCAM species: Human (Homo sapiens) [TaxId: 9606]
Score = 63.2 bits (152), Expect = 4e-13
Identities = 21/90 (23%), Positives = 35/90 (38%), Gaps = 1/90 (1%)
Query: 14 PGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVVVPAGETSCT 73
P P D + + + DGGSPI Y+V + + W+ + +P+G
Sbjct: 1 PSAPKLEGQMGEDGNSIKVNLIKQD-DGGSPIRHYLVRYRALSSEWKPEIRLPSGSDHVM 59
Query: 74 VPGLIEGETYQFQVRAVNAAGPGEASKPTA 103
+ L Y+ V A N G +A+
Sbjct: 60 LKSLDWNAEYEVYVVAENQQGKSKAAHFVF 89
|
| >d1x5ha1 b.1.2.1 (A:8-126) Neogenin {Human (Homo sapiens) [TaxId: 9606]} Length = 119 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Neogenin species: Human (Homo sapiens) [TaxId: 9606]
Score = 63.0 bits (152), Expect = 9e-13
Identities = 24/101 (23%), Positives = 39/101 (38%), Gaps = 3/101 (2%)
Query: 5 VLIKNPFDEP-GKPTDLEATDWDKDHVDLQWTP-PISDGGSPITGYVVE-MKDKTGNWEK 61
V ++ D P P +L + + + W P + ITGY + K +
Sbjct: 2 VAVRTLSDVPSAAPQNLSLEVRNSKSIMIHWQPPAPATQNGQITGYKIRYRKASRKSDVT 61
Query: 62 AVVVPAGETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPT 102
+V + S + GL G Y F+V A+ G G A+
Sbjct: 62 ETLVSGTQLSQLIEGLDRGTEYNFRVAALTINGTGPATDWL 102
|
| >d2dtge2 b.1.2.1 (E:593-807) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 196 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Insulin receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 64.8 bits (156), Expect = 1e-12
Identities = 15/103 (14%), Positives = 30/103 (29%), Gaps = 2/103 (1%)
Query: 8 KNPFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVVVPA 67
K + + +D++ P G V + +
Sbjct: 95 KTDSQILKELEESSFRKTFEDYLHNVVFVPRPSRKRRSLGDVGNAGN--NEEHRPFEKVV 152
Query: 68 GETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPK 110
+ S + GL Y+ +++A N P E A + A+
Sbjct: 153 NKESLVISGLRHFTGYRIELQACNQDTPEERCSVAAYVSARTM 195
|
| >d2dtge2 b.1.2.1 (E:593-807) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 196 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Insulin receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 54.8 bits (130), Expect = 2e-09
Identities = 15/96 (15%), Positives = 31/96 (32%), Gaps = 6/96 (6%)
Query: 14 PGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVVVPAGETSCT 73
P P D + + L+W PP G IT Y+V + + + E + C
Sbjct: 3 PSVPLDPISVSNSSSQIILKWKPPSDPNG-NITHYLVFWERQAEDSELFELDY-----CL 56
Query: 74 VPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKP 109
+ T+ + ++ ++ +
Sbjct: 57 KGLKLPSRTWSPPFESEDSQKHNQSEYEDSAGECCS 92
|
| >d2dtge2 b.1.2.1 (E:593-807) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 196 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Insulin receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.6 bits (93), Expect = 2e-04
Identities = 16/47 (34%), Positives = 19/47 (40%), Gaps = 2/47 (4%)
Query: 449 KPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATG 495
PS P P + L WKPP D G IT+Y+V A
Sbjct: 2 NPSVPLDP-ISVSNSSSQIILKWKPPSDPNG-NITHYLVFWERQAED 46
|
| >d2dtge2 b.1.2.1 (E:593-807) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 196 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Insulin receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.7 bits (83), Expect = 0.003
Identities = 18/179 (10%), Positives = 36/179 (20%), Gaps = 35/179 (19%)
Query: 316 SKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTI 375
+ P P PI + + + + WKPP D G IT + +
Sbjct: 1 TNPSVPLDPI-SVSNSSSQIILKWKPPSDPNG-NITH--------------------YLV 38
Query: 376 TVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTV 435
+ D ++ T + ++ + +
Sbjct: 39 F----WERQAEDSELFELDYCLKGLKLPSRTWSPPFESEDSQKHNQSEYEDSAGECCSCP 94
Query: 436 GSDSASCKVYVVDKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESAT 494
+DS + P V +
Sbjct: 95 KTDSQ---------ILKELEESSFRKTFEDYLHNVVFVPRPSRKRRSLGDVGNAGNNEE 144
|
| >d1fnha1 b.1.2.1 (A:3-92) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 90 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin, different Fn3 modules species: Human (Homo sapiens) [TaxId: 9606]
Score = 61.5 bits (148), Expect = 1e-12
Identities = 19/87 (21%), Positives = 30/87 (34%), Gaps = 3/87 (3%)
Query: 17 PTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVVVPAGETSCTVPG 76
PTDL+ T + QWTPP + K K + + +S V G
Sbjct: 3 PTDLKFTQVTPTSLSAQWTPPNVQLTGYRVRVTPKEKT---GPMKEINLAPDSSSVVVSG 59
Query: 77 LIEGETYQFQVRAVNAAGPGEASKPTA 103
L+ Y+ V A+ ++
Sbjct: 60 LMVATKYEVSVYALKDTLTSRPAQGVV 86
|
| >d2djsa1 b.1.2.1 (A:8-102) Ephrin type-B receptor 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 95 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Ephrin type-B receptor 1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 61.6 bits (148), Expect = 1e-12
Identities = 20/89 (22%), Positives = 30/89 (33%), Gaps = 1/89 (1%)
Query: 14 PGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVVVPAGETSCT 73
P + + L W P I Y + +K N + + + +
Sbjct: 1 PSTVPIMHQVSATMRSITLSWPQP-EQPNGIILDYEIRYYEKEHNEFNSSMARSQTNTAR 59
Query: 74 VPGLIEGETYQFQVRAVNAAGPGEASKPT 102
+ GL G Y QVRA AG G+ S
Sbjct: 60 IDGLRPGMVYVVQVRARTVAGYGKFSGKM 88
|
| >d1uc6a_ b.1.2.1 (A:) Ciliary neurotrophic factor receptor alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 109 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Ciliary neurotrophic factor receptor alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 61.9 bits (149), Expect = 1e-12
Identities = 19/100 (19%), Positives = 37/100 (37%), Gaps = 6/100 (6%)
Query: 14 PGKPTDLEAT--DWDKDHVDLQWTPPIS--DGGSPITGYVVEMKDKTGNWEKAVVVPAGE 69
P P ++ A + +++ W P + D S + + + + + V +
Sbjct: 8 PDPPENVVARPVPSNPRRLEVTWQTPSTWPDPESFPLKFFLRYRPLILDQWQHVELSN-G 66
Query: 70 TSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKP 109
T+ T+ G+ Y QV A + G S + A P
Sbjct: 67 TAHTITDAYAGKEYIIQVAAKD-NEIGTWSDWSVAAHATP 105
|
| >d1uc6a_ b.1.2.1 (A:) Ciliary neurotrophic factor receptor alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 109 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Ciliary neurotrophic factor receptor alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.5 bits (83), Expect = 0.001
Identities = 9/48 (18%), Positives = 15/48 (31%), Gaps = 3/48 (6%)
Query: 447 VDKPSPPQGP-LDVSDITPESCSLSWKPP--LDDGGSPITNYVVEKYE 491
KP PP+ P ++W+ P D S + +
Sbjct: 5 SVKPDPPENVVARPVPSNPRRLEVTWQTPSTWPDPESFPLKFFLRYRP 52
|
| >d1bqua1 b.1.2.1 (A:5-99) Cytokine receptor gp130 cytokine-binding domains {Human (Homo sapiens) [TaxId: 9606]} Length = 95 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Cytokine receptor gp130 cytokine-binding domains species: Human (Homo sapiens) [TaxId: 9606]
Score = 61.5 bits (148), Expect = 1e-12
Identities = 11/93 (11%), Positives = 23/93 (24%), Gaps = 2/93 (2%)
Query: 14 PGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVVVPAGETSCT 73
P KP +L + + +W + + + +
Sbjct: 4 PEKPKNLSCIVNEGKKMRCEWDGG-RETHLETNFTLKSEWATHKFADCKAKRDTPTSCTV 62
Query: 74 VPGLIEGETYQFQVRAVNAAGPGEASKPTA-PI 105
+ + V A NA G + P+
Sbjct: 63 DYSTVYFVNIEVWVEAENALGKVTSDHINFDPV 95
|
| >d1f6fb2 b.1.2.1 (B:101-203) Prolactin receptor {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 103 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Prolactin receptor species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 61.6 bits (148), Expect = 2e-12
Identities = 21/98 (21%), Positives = 35/98 (35%), Gaps = 9/98 (9%)
Query: 13 EPGKPTDLEAT----DWDKDHVDLQWTPPIS---DGGSPITGYVVEMKDKTGNWEKAVVV 65
EP P +L K ++ ++W+PP G Y + +K + E +
Sbjct: 2 EPEPPRNLTLEVKQLKDKKTYLWVKWSPPTITDVKTGWFTMEYEIRLKPE-EAEEWEIHF 60
Query: 66 PAGETSCTVPGLIEGETYQFQVRAVNAAGP-GEASKPT 102
+T V L G+ Y Q R G S+ +
Sbjct: 61 TGHQTQFKVFDLYPGQKYLVQTRCKPDHGYWSRWSQES 98
|
| >d1f6fb2 b.1.2.1 (B:101-203) Prolactin receptor {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 103 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Prolactin receptor species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 40.0 bits (92), Expect = 7e-05
Identities = 8/48 (16%), Positives = 13/48 (27%), Gaps = 6/48 (12%)
Query: 449 KPSPPQGP---LDVSDITPESCSLSWKPPL---DDGGSPITNYVVEKY 490
+P PP+ + + W PP G Y +
Sbjct: 2 EPEPPRNLTLEVKQLKDKKTYLWVKWSPPTITDVKTGWFTMEYEIRLK 49
|
| >d1x5ja1 b.1.2.1 (A:8-107) Neogenin {Human (Homo sapiens) [TaxId: 9606]} Length = 100 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Neogenin species: Human (Homo sapiens) [TaxId: 9606]
Score = 60.4 bits (145), Expect = 4e-12
Identities = 17/91 (18%), Positives = 23/91 (25%), Gaps = 3/91 (3%)
Query: 14 PGKPTDLEATDWDKDHVDLQWTPPISDGGSP---ITGYVVEMKDKTGNWEKAVVVPAGET 70
P ++A+ D + + W Y V K K A
Sbjct: 2 MMPPVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTKYKNANATTL 61
Query: 71 SCTVPGLIEGETYQFQVRAVNAAGPGEASKP 101
S V GL Y+F V S
Sbjct: 62 SYLVTGLKPNTLYEFSVMVTKGRRSSTWSMT 92
|
| >d1wk0a_ b.1.2.1 (A:) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} Length = 137 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) species: Human (Homo sapiens) [TaxId: 9606]
Score = 61.4 bits (148), Expect = 4e-12
Identities = 21/109 (19%), Positives = 33/109 (30%), Gaps = 8/109 (7%)
Query: 14 PGKPTDLEATDWDKDHVDLQWTPPISDGGSPITG--------YVVEMKDKTGNWEKAVVV 65
A+D V L W+PP S Y V + + + V
Sbjct: 18 LSNIVKPVASDIQARTVVLTWSPPSSLINGETDESSVPELYGYEVLISSTGKDGKYKSVY 77
Query: 66 PAGETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAP 114
ET+ T+ L Y +V+A + G S+ + P
Sbjct: 78 VGEETNITLNDLKPAMDYHAKVQAEYNSIKGTPSEAEIFTTLSCEPDIP 126
|
| >d1wk0a_ b.1.2.1 (A:) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} Length = 137 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.0 bits (82), Expect = 0.003
Identities = 10/60 (16%), Positives = 17/60 (28%), Gaps = 4/60 (6%)
Query: 433 NTVGSDSASCKVYVVDKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYES 492
+ G + ++ P SDI + L+W PP V +
Sbjct: 4 GSSGDEETKAFEALLSNIVKPV----ASDIQARTVVLTWSPPSSLINGETDESSVPELYG 59
|
| >d1fnha2 b.1.2.1 (A:93-182) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 90 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin, different Fn3 modules species: Human (Homo sapiens) [TaxId: 9606]
Score = 59.9 bits (144), Expect = 5e-12
Identities = 17/87 (19%), Positives = 27/87 (31%), Gaps = 4/87 (4%)
Query: 17 PTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVVVPAGETSCTVPG 76
P TD + + + W ITG+ V+ G + S T+ G
Sbjct: 5 PRRARVTDATETTITISWRTKTE----TITGFQVDAVPANGQTPIQRTIKPDVRSYTITG 60
Query: 77 LIEGETYQFQVRAVNAAGPGEASKPTA 103
L G Y+ + +N A
Sbjct: 61 LQPGTDYKIYLYTLNDNARSSPVVIDA 87
|
| >d1fnha2 b.1.2.1 (A:93-182) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 90 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin, different Fn3 modules species: Human (Homo sapiens) [TaxId: 9606]
Score = 35.6 bits (81), Expect = 0.002
Identities = 9/74 (12%), Positives = 17/74 (22%)
Query: 186 RADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVTGTEFTDNNVHEGKAYE 245
R T + T+ N + +T + G Y+
Sbjct: 9 RVTDATETTITISWRTKTETITGFQVDAVPANGQTPIQRTIKPDVRSYTITGLQPGTDYK 68
Query: 246 YRVSAVNAAGTEKP 259
+ +N P
Sbjct: 69 IYLYTLNDNARSSP 82
|
| >d1cd9b1 b.1.2.1 (B:1-107) Granulocyte colony-stimulating factor (GC-SF) receptor {Mouse (Mus musculus) [TaxId: 10090]} Length = 107 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Granulocyte colony-stimulating factor (GC-SF) receptor species: Mouse (Mus musculus) [TaxId: 10090]
Score = 60.0 bits (144), Expect = 6e-12
Identities = 14/94 (14%), Positives = 27/94 (28%), Gaps = 9/94 (9%)
Query: 14 PGKPTDLEA-TDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWE-------KAVVV 65
P P++L + + QW P + P + + + +
Sbjct: 5 PASPSNLSCLMHLTTNSLVCQWEPG-PETHLPTSFILKSFRSRADCQYQGDTIPDCVAKK 63
Query: 66 PAGETSCTVPGLIEGETYQFQVRAVNAAGPGEAS 99
S L+ + V+A N G E+
Sbjct: 64 RQNNCSIPRKNLLLYQYMAIWVQAENMLGSSESP 97
|
| >d1cd9b1 b.1.2.1 (B:1-107) Granulocyte colony-stimulating factor (GC-SF) receptor {Mouse (Mus musculus) [TaxId: 10090]} Length = 107 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Granulocyte colony-stimulating factor (GC-SF) receptor species: Mouse (Mus musculus) [TaxId: 10090]
Score = 43.8 bits (102), Expect = 3e-06
Identities = 7/42 (16%), Positives = 14/42 (33%), Gaps = 1/42 (2%)
Query: 450 PSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYE 491
P+ P + +T S W+P + P + +
Sbjct: 5 PASPSNLSCLMHLTTNSLVCQWEPG-PETHLPTSFILKSFRS 45
|
| >d1cd9b1 b.1.2.1 (B:1-107) Granulocyte colony-stimulating factor (GC-SF) receptor {Mouse (Mus musculus) [TaxId: 10090]} Length = 107 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Granulocyte colony-stimulating factor (GC-SF) receptor species: Mouse (Mus musculus) [TaxId: 10090]
Score = 36.1 bits (82), Expect = 0.002
Identities = 7/34 (20%), Positives = 13/34 (38%), Gaps = 1/34 (2%)
Query: 318 PGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPIT 351
P P+ +T S+ W+P + P +
Sbjct: 5 PASPSNLSCLMHLTTNSLVCQWEPG-PETHLPTS 37
|
| >d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 100 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Neural cell adhesion molecule (NCAM) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 59.9 bits (144), Expect = 6e-12
Identities = 21/97 (21%), Positives = 34/97 (35%), Gaps = 1/97 (1%)
Query: 354 PKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIY 413
P + + SI + T G+ T+ G P+PT WT +G+ + + + +
Sbjct: 4 PTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSS 63
Query: 414 R-NKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDK 449
D Y N G AS + V K
Sbjct: 64 ELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKVFAK 100
|
| >d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 100 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Neural cell adhesion molecule (NCAM) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 36.4 bits (83), Expect = 0.001
Identities = 12/39 (30%), Positives = 19/39 (48%)
Query: 279 TASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSK 317
++ L I+N + D Y A+N G A I + V +K
Sbjct: 62 SSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKVFAK 100
|
| >d1tdqa3 b.1.2.1 (A:186-271) Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 86 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Tenascin species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 59.5 bits (143), Expect = 6e-12
Identities = 23/87 (26%), Positives = 30/87 (34%), Gaps = 5/87 (5%)
Query: 17 PTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVVVPAGETSCTVPG 76
P DL T + + L WT PI Y + +G + V VP TS T+
Sbjct: 4 PRDLMVTASSETSISLIWTKASG----PIDHYRITFTPSSGISSE-VTVPRDRTSYTLTD 58
Query: 77 LIEGETYQFQVRAVNAAGPGEASKPTA 103
L G Y + A S A
Sbjct: 59 LEPGAEYIISITAERGRQQSLESTVDA 85
|
| >d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 130 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cardiac myosin binding protein C, different domains species: Human (Homo sapiens) [TaxId: 9606]
Score = 60.9 bits (146), Expect = 6e-12
Identities = 34/127 (26%), Positives = 56/127 (44%), Gaps = 33/127 (25%)
Query: 354 PKITSDLSIR---DMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSP------------ 398
PKI D R + V+AG + + VP SG P PT IW + +
Sbjct: 5 PKIHLDCPGRIPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPED 64
Query: 399 -----------------DGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSAS 441
+GR++ ET+++++I+ + A++ D G YT+ + N VG D +
Sbjct: 65 TGDSDEWVFDKKLLCETEGRVRVETTKDRSIFTVEGAEK-EDEGVYTVTVKNPVGEDQVN 123
Query: 442 CKVYVVD 448
V V+D
Sbjct: 124 LTVKVID 130
|
| >d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 130 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cardiac myosin binding protein C, different domains species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.9 bits (115), Expect = 7e-08
Identities = 20/123 (16%), Positives = 41/123 (33%), Gaps = 7/123 (5%)
Query: 114 PRID----RSTLNDVKIKAGQSFSFDVK---EFRELSYTKSPLRALGVRANSTKGWVKLS 166
P+I + + + AG DV + + +
Sbjct: 5 PKIHLDCPGRIPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPED 64
Query: 167 EPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASA 226
+ +C+ GR V+TTK ++ + + D G Y++T++N +G +
Sbjct: 65 TGDSDEWVFDKKLLCETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNL 124
Query: 227 HVT 229
V
Sbjct: 125 TVK 127
|
| >d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 130 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cardiac myosin binding protein C, different domains species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.6 bits (96), Expect = 3e-05
Identities = 11/48 (22%), Positives = 24/48 (50%)
Query: 268 GKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVV 315
R++ T + ++ + ++D G+Y + KN G D ++ V V+
Sbjct: 82 EGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVKVI 129
|
| >d2cuia1 b.1.2.1 (A:6-106) Tenascin-X {Human (Homo sapiens) [TaxId: 9606]} Length = 101 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Tenascin-X species: Human (Homo sapiens) [TaxId: 9606]
Score = 59.6 bits (143), Expect = 7e-12
Identities = 15/98 (15%), Positives = 30/98 (30%), Gaps = 5/98 (5%)
Query: 14 PGKPTDLEATDWDKDHVDLQWTPPISDGGSPI-----TGYVVEMKDKTGNWEKAVVVPAG 68
+ + L TD + L W P S + ++ ++VP
Sbjct: 4 RPRLSQLSVTDVTTSSLRLNWEAPPGAFDSFLLRFGVPSPSTLEPHPRPLLQRELMVPGT 63
Query: 69 ETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIV 106
S + L G Y + + ++ + TA +
Sbjct: 64 RHSAVLRDLRSGTLYSLTLYGLRGPHKADSIQGTARTL 101
|
| >d1fnfa2 b.1.2.1 (A:1236-1326) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 91 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin, different Fn3 modules species: Human (Homo sapiens) [TaxId: 9606]
Score = 59.1 bits (142), Expect = 9e-12
Identities = 17/88 (19%), Positives = 31/88 (35%), Gaps = 4/88 (4%)
Query: 17 PTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKT-GNWEKAVVVPAGETSCTVP 75
PTDL T+ D + + W PP S +T ++V + + + + +
Sbjct: 4 PTDLRFTNIGPDTMRVTWAPPPS---IDLTNFLVRYSPVKNEEDVAELSISPSDNAVVLT 60
Query: 76 GLIEGETYQFQVRAVNAAGPGEASKPTA 103
L+ G Y V +V +
Sbjct: 61 NLLPGTEYVVSVSSVYEQHESTPLRGRQ 88
|
| >d1x4ya1 b.1.2.1 (A:8-108) Brother of CDO precursor (BOC) {Mouse (Mus musculus) [TaxId: 10090]} Length = 101 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Brother of CDO precursor (BOC) species: Mouse (Mus musculus) [TaxId: 10090]
Score = 58.9 bits (141), Expect = 1e-11
Identities = 14/92 (15%), Positives = 31/92 (33%), Gaps = 4/92 (4%)
Query: 14 PGKPTDLEATDWDKDHVDLQWTPPISDGG-SPITGYVVEMKDKTG---NWEKAVVVPAGE 69
P ++ + L+W + +PI G+ + + + K +V
Sbjct: 2 VAGPYITFTDAVNETTIMLKWMYIPASNNNTPIHGFYIYYRPTDSDNDSDYKKDMVEGDR 61
Query: 70 TSCTVPGLIEGETYQFQVRAVNAAGPGEASKP 101
++ L +Y +++ N G E S
Sbjct: 62 YWHSISHLQPETSYDIKMQCFNEGGESEFSNV 93
|
| >d2cuma1 b.1.2.1 (A:7-99) Tenascin-X {Human (Homo sapiens) [TaxId: 9606]} Length = 93 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Tenascin-X species: Human (Homo sapiens) [TaxId: 9606]
Score = 58.7 bits (141), Expect = 1e-11
Identities = 17/87 (19%), Positives = 31/87 (35%), Gaps = 5/87 (5%)
Query: 17 PTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVVVPAGETSCTVPG 76
P DLEA + L WT P + + + +++P G TS + G
Sbjct: 5 PRDLEAKEVTPRTALLTWTEPPVRPAGYLLSFHTPG-----GQTQEILLPGGITSHQLLG 59
Query: 77 LIEGETYQFQVRAVNAAGPGEASKPTA 103
L +Y +++A+ +
Sbjct: 60 LFPSTSYNARLQAMWGQSLLPPVSTSF 86
|
| >d1k85a_ b.1.2.1 (A:) Fibronectin type III domain from chitinase A1. {Bacillus circulans [TaxId: 1397]} Length = 88 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin type III domain from chitinase A1. species: Bacillus circulans [TaxId: 1397]
Score = 58.3 bits (140), Expect = 2e-11
Identities = 27/95 (28%), Positives = 40/95 (42%), Gaps = 11/95 (11%)
Query: 14 PGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVVVPAGETSCT 73
P PT+L +T + L WT + G +TGY V A+ T+ T
Sbjct: 4 PTAPTNLASTAQTTSSITLSWTASTDNVG--VTGYDV-------YNGTALATTVTGTTAT 54
Query: 74 VPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAK 108
+ GL +Y F V+A +AA G S + + K
Sbjct: 55 ISGLAADTSYTFTVKAKDAA--GNVSAASNAVSVK 87
|
| >d1k85a_ b.1.2.1 (A:) Fibronectin type III domain from chitinase A1. {Bacillus circulans [TaxId: 1397]} Length = 88 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin type III domain from chitinase A1. species: Bacillus circulans [TaxId: 1397]
Score = 37.5 bits (86), Expect = 3e-04
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 228 VTGTEFTDNNVHEGKAYEYRVSAVNAAGTEKP 259
VTGT T + + +Y + V A +AAG
Sbjct: 48 VTGTTATISGLAADTSYTFTVKAKDAAGNVSA 79
|
| >d1x5ka1 b.1.2.1 (A:8-118) Neogenin {Human (Homo sapiens) [TaxId: 9606]} Length = 111 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Neogenin species: Human (Homo sapiens) [TaxId: 9606]
Score = 59.2 bits (142), Expect = 2e-11
Identities = 18/95 (18%), Positives = 32/95 (33%), Gaps = 3/95 (3%)
Query: 10 PFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVV--VPA 67
P P T + + + + + W PP G + D V+ V
Sbjct: 11 PTSPPKDVT-VVSKEGKPKTIIVNWQPPSEANGKITGYIIYYSTDVNAEIHDWVIEPVVG 69
Query: 68 GETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPT 102
+ + L Y F+++A N+ G G S+
Sbjct: 70 NRLTHQIQELTLDTPYYFKIQARNSKGMGPMSEAV 104
|
| >d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 97 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Twitchin species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 58.4 bits (140), Expect = 2e-11
Identities = 16/99 (16%), Positives = 27/99 (27%), Gaps = 3/99 (3%)
Query: 354 PKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIY 413
P+ V G+ P W + E+ + + N
Sbjct: 2 PRFIVKP--YGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGL 59
Query: 414 RNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSP 452
K D G YT++ N+ G+ + V P
Sbjct: 60 TINRVKG-DDKGEYTVRAKNSYGTKEEIVFLNVTRHSEP 97
|
| >d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 97 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Twitchin species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 39.1 bits (90), Expect = 1e-04
Identities = 12/51 (23%), Positives = 17/51 (33%)
Query: 270 RIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGP 320
+ + L I D G Y + AKN YG + + V P
Sbjct: 47 KYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSYGTKEEIVFLNVTRHSEP 97
|
| >d1axib2 b.1.2.1 (B:131-236) Growth hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 106 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Growth hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 58.8 bits (141), Expect = 2e-11
Identities = 18/104 (17%), Positives = 36/104 (34%), Gaps = 11/104 (10%)
Query: 14 PGKPTDLEATDWD------KDHVDLQWTPPI---SDGGSPITGYVVEMKDKTGNWEKAVV 64
P P L T + + ++W P G + Y ++ K+ + ++
Sbjct: 1 PDPPIALNWTLLNVSLTGIHADIQVRWEAPRNADIQKGWMVLEYELQYKEV-NETKWKMM 59
Query: 65 VPAGETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAK 108
P TS V L + Y+ +VR+ G + + +
Sbjct: 60 DPILTTSVPVYSLKVDKEYEVRVRSKQRNS-GNYGEFSEVLYVT 102
|
| >d2b5ib2 b.1.2.1 (B:104-207) Interleukin-2 receptor beta chain {Human (Homo sapiens) [TaxId: 9606]} Length = 104 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Interleukin-2 receptor beta chain species: Human (Homo sapiens) [TaxId: 9606]
Score = 58.1 bits (139), Expect = 3e-11
Identities = 14/101 (13%), Positives = 27/101 (26%), Gaps = 4/101 (3%)
Query: 14 PGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVE---MKDKTGNWEKAVVVPAGET 70
P L+ + ++ W + T + + +
Sbjct: 3 LMAPISLQVVHVETHRCNISWEISQASHYFERHLEFEARTLSPGHTWEEAPLLTLKQKQE 62
Query: 71 SCTVPGLIEGETYQFQVRAVNAAG-PGEASKPTAPIVAKPK 110
+ L Y+FQVR G S + P+ + K
Sbjct: 63 WICLETLTPDTQYEFQVRVKPLQGEFTTWSPWSQPLAFRTK 103
|
| >d2b5ib2 b.1.2.1 (B:104-207) Interleukin-2 receptor beta chain {Human (Homo sapiens) [TaxId: 9606]} Length = 104 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Interleukin-2 receptor beta chain species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.5 bits (83), Expect = 0.001
Identities = 6/42 (14%), Positives = 12/42 (28%), Gaps = 1/42 (2%)
Query: 449 KPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKY 490
+ P L V + C++SW+ +
Sbjct: 2 RLMAPIS-LQVVHVETHRCNISWEISQASHYFERHLEFEART 42
|
| >d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]} Length = 102 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Telokin species: Turkey (Meleagris gallopavo) [TaxId: 9103]
Score = 57.6 bits (138), Expect = 4e-11
Identities = 20/94 (21%), Positives = 34/94 (36%), Gaps = 2/94 (2%)
Query: 353 APKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTI 412
P T + DM V+ G G P P +W + + V + + E
Sbjct: 8 KPYFTKTI--LDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNC 65
Query: 413 YRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYV 446
S D YT + VN++G + + ++ V
Sbjct: 66 SLTISEVCGDDDAKYTCKAVNSLGEATCTAELLV 99
|
| >d1fnfa1 b.1.2.1 (A:1142-1235) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 94 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin, different Fn3 modules species: Human (Homo sapiens) [TaxId: 9606]
Score = 56.8 bits (136), Expect = 6e-11
Identities = 21/93 (22%), Positives = 28/93 (30%), Gaps = 6/93 (6%)
Query: 14 PGKPTDLEATD-WDKDHVDLQWTPPISDGGSPITGYVVE--MKDKTGNWEKAVVVPAGET 70
PT+L D + + W ITGY + + VV A ++
Sbjct: 2 LSPPTNLHLEANPDTGVLTVSWERS---TTPDITGYRITTTPTNGQQGNSLEEVVHADQS 58
Query: 71 SCTVPGLIEGETYQFQVRAVNAAGPGEASKPTA 103
SCT L G Y V V T
Sbjct: 59 SCTFDNLSPGLEYNVSVYTVKDDKESVPISDTI 91
|
| >d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 91 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Titin species: Human (Homo sapiens), different modules [TaxId: 9606]
Score = 56.8 bits (136), Expect = 6e-11
Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Query: 363 RDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRAT 422
R MTV GE + G P PT W G +S R + T++ ++ + S + +
Sbjct: 7 RSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQAS- 65
Query: 423 DSGSYTIQLVNTVGSDSASCKVYV 446
D G+Y++ + N+ G A + +
Sbjct: 66 DEGNYSVVVENSEGKQEAEFTLTI 89
|
| >d1tena_ b.1.2.1 (A:) Tenascin {Human (Homo sapiens) [TaxId: 9606]} Length = 90 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Tenascin species: Human (Homo sapiens) [TaxId: 9606]
Score = 56.1 bits (134), Expect = 9e-11
Identities = 11/91 (12%), Positives = 27/91 (29%), Gaps = 3/91 (3%)
Query: 13 EPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVVVPAGETSC 72
P+ +E D + W P+++ Y ++ + + E
Sbjct: 1 RLDAPSQIEVKDVTDTTALITWFKPLAEIDGIELTYGIKD---VPGDRTTIDLTEDENQY 57
Query: 73 TVPGLIEGETYQFQVRAVNAAGPGEASKPTA 103
++ L Y+ + + +K T
Sbjct: 58 SIGNLKPDTEYEVSLISRRGDMSSNPAKETF 88
|
| >d1x4xa1 b.1.2.1 (A:8-100) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} Length = 93 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) species: Human (Homo sapiens) [TaxId: 9606]
Score = 55.8 bits (133), Expect = 2e-10
Identities = 19/88 (21%), Positives = 33/88 (37%), Gaps = 3/88 (3%)
Query: 14 PGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVVVPAGETSCT 73
P + + T + W G+ +T Y +E G+ + P S
Sbjct: 1 PDQCKPPQVTCRSATCAQVNW-EVPLSNGTDVTEYRLEWGGVEGSMQICYCGP--GLSYE 57
Query: 74 VPGLIEGETYQFQVRAVNAAGPGEASKP 101
+ GL TY +V+A++ G G S+
Sbjct: 58 IKGLSPATTYYCRVQALSVVGAGPFSEV 85
|
| >d1cfba2 b.1.2.1 (A:710-814) Neuroglian, two amino proximal Fn3 repeats {Drosophila melanogaster [TaxId: 7227]} Length = 105 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Neuroglian, two amino proximal Fn3 repeats species: Drosophila melanogaster [TaxId: 7227]
Score = 56.1 bits (134), Expect = 2e-10
Identities = 15/92 (16%), Positives = 31/92 (33%), Gaps = 3/92 (3%)
Query: 14 PGKPTDLEATDWDKDHVDLQWTPPI-SDGGSPITGYVVEMKDKTG--NWEKAVVVPAGET 70
P ++ + +++ + WTP + +P Y V K WE + +
Sbjct: 5 FKNPDNVVGQGTEPNNLVISWTPMPEIEHNAPNFHYYVSWKRDIPAAAWENNNIFDWRQN 64
Query: 71 SCTVPGLIEGETYQFQVRAVNAAGPGEASKPT 102
+ + Y +V A+N G +
Sbjct: 65 NIVIADQPTFVKYLIKVVAINDRGESNVAAEE 96
|
| >d1tdqa1 b.1.2.1 (A:1-93) Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 93 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Tenascin species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 55.3 bits (132), Expect = 2e-10
Identities = 16/91 (17%), Positives = 31/91 (34%), Gaps = 5/91 (5%)
Query: 14 PGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGN-WEKAVVVPAGETSC 72
PT + D ++WTPP + + +++ G + + +
Sbjct: 4 IDGPTQILVRDVSDTVAFVEWTPPRA----KVDFILLKYGLVGGEGGKTTFRLQPPLSQY 59
Query: 73 TVPGLIEGETYQFQVRAVNAAGPGEASKPTA 103
+V L G Y+ + AV +AS
Sbjct: 60 SVQALRPGSRYEVSISAVRGTNESDASSTQF 90
|
| >d2dtge3 b.1.2.1 (E:468-592) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 125 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Insulin receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 55.8 bits (133), Expect = 3e-10
Identities = 10/108 (9%), Positives = 22/108 (20%), Gaps = 24/108 (22%)
Query: 16 KPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNW---------------- 59
+ D + L+W P + G+++ K+
Sbjct: 4 ELLKFSYIRTSFDKILLRWEPYWPPDFRDLLGFMLFYKEAPYQNVTEFDGQDACGSNSWT 63
Query: 60 --------EKAVVVPAGETSCTVPGLIEGETYQFQVRAVNAAGPGEAS 99
+ GL Y V+ + +
Sbjct: 64 VVDIDPPLRSNDPKSQNHPGWLMRGLKPWTQYAIFVKTLVTFSDERRT 111
|
| >d2dtge3 b.1.2.1 (E:468-592) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 125 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Insulin receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 35.4 bits (80), Expect = 0.004
Identities = 4/46 (8%), Positives = 13/46 (28%), Gaps = 1/46 (2%)
Query: 450 PSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATG 495
+ + + L W+P + +++ E+
Sbjct: 2 ENELLK-FSYIRTSFDKILLRWEPYWPPDFRDLLGFMLFYKEAPYQ 46
|
| >d2gysa2 b.1.2.1 (A:104-217) Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors {Human (Homo sapiens) [TaxId: 9606]} Length = 114 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors species: Human (Homo sapiens) [TaxId: 9606]
Score = 55.4 bits (132), Expect = 3e-10
Identities = 18/95 (18%), Positives = 33/95 (34%), Gaps = 8/95 (8%)
Query: 14 PGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEM-------KDKTGNWEKAVVVP 66
P +P DL+ + D+DH L W+ + S + ++
Sbjct: 6 PPEPRDLQIS-TDQDHFLLTWSVALGSPQSHWLSPGDLEFEVVYKRLQDSWEDAAILLSN 64
Query: 67 AGETSCTVPGLIEGETYQFQVRAVNAAGPGEASKP 101
+ + L+ TY +VR A G + +P
Sbjct: 65 TSQATLGPEHLMPSSTYVARVRTRLAPGSRLSGRP 99
|
| >d1wfta_ b.1.2.1 (A:) Host cell factor 2, HCF-2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 123 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Host cell factor 2, HCF-2 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 55.4 bits (132), Expect = 5e-10
Identities = 22/105 (20%), Positives = 36/105 (34%), Gaps = 18/105 (17%)
Query: 14 PGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVV--------- 64
PG P+ + + + D + L W PP S G I Y + +T +
Sbjct: 8 PGAPSTVRISK-NVDGIHLSWEPPTSPSG-NILEYSAYLAIRTAQMQDNPSQLVFMRIYC 65
Query: 65 -------VPAGETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPT 102
V AG+ + F++ A N G G A++
Sbjct: 66 GLKTSCTVTAGQLANAHIDYTSRPAIVFRISAKNEKGYGPATQIR 110
|
| >d2fnba_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 95 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin, different Fn3 modules species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.8 bits (128), Expect = 7e-10
Identities = 23/92 (25%), Positives = 31/92 (33%), Gaps = 4/92 (4%)
Query: 13 EPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGN-WEKAVVVPAGETS 71
E + TDL D + L+WTP S I GY + + V +
Sbjct: 5 EVPQLTDLSFVDITDSSIGLRWTPL---NSSTIIGYRITVVAAGEGIPIFEDFVDSSVGY 61
Query: 72 CTVPGLIEGETYQFQVRAVNAAGPGEASKPTA 103
TV GL G Y V + G + T
Sbjct: 62 YTVTGLEPGIDYDISVITLINGGESAPTTLTQ 93
|
| >d1y6kr1 b.1.2.1 (R:2-100) Interleukin-10 receptor 1, IL-10R1 {Human (Homo sapiens) [TaxId: 9606]} Length = 99 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Interleukin-10 receptor 1, IL-10R1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.7 bits (128), Expect = 9e-10
Identities = 16/96 (16%), Positives = 28/96 (29%), Gaps = 7/96 (7%)
Query: 16 KPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVVVPAGETSCT-- 73
P + H+ L WTP S Y V + ++ + S
Sbjct: 6 SPPSVWFEAEFFHHI-LHWTPIPQQSESTC--YEVALLRYGIESWNSISQCSQTLSYDLT 62
Query: 74 --VPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVA 107
L Y+ +VRAV+ + + +
Sbjct: 63 AVTLDLYHSNGYRARVRAVDGSRHSQWTVTNTRFSV 98
|
| >d2ibga1 b.1.2.1 (A:573-667) Hedgehog receptor iHog {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 95 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Hedgehog receptor iHog species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Score = 53.6 bits (127), Expect = 9e-10
Identities = 21/92 (22%), Positives = 34/92 (36%), Gaps = 2/92 (2%)
Query: 10 PFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVVVPAG- 68
D P LE ++ + V L W+ ITGY + + E G
Sbjct: 3 ALDPMPVPELLEIEEYSETAVVLHWSLASDADEHLITGYYAYYRPSSSAGEYFKATIEGA 62
Query: 69 -ETSCTVPGLIEGETYQFQVRAVNAAGPGEAS 99
S + L Y+F++++ +AA E S
Sbjct: 63 HARSFKIAPLETATMYEFKLQSFSAASASEFS 94
|
| >d2gysa4 b.1.2.1 (A:317-416) Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors {Human (Homo sapiens) [TaxId: 9606]} Length = 100 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.4 bits (127), Expect = 1e-09
Identities = 15/85 (17%), Positives = 26/85 (30%), Gaps = 2/85 (2%)
Query: 14 PGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVVVPAG-ETSC 72
P L+ T D D L+W + ++ + T W+ + S
Sbjct: 5 QMAPPSLQVT-KDGDSYSLRWETMKMRYEHIDHTFEIQYRKDTATWKDSKTETLQNAHSM 63
Query: 73 TVPGLIEGETYQFQVRAVNAAGPGE 97
+P L Y +VR +
Sbjct: 64 ALPALEPSTRYWARVRVRTSRTGYN 88
|
| >d1wfua_ b.1.2.1 (A:) Fibronectin type 3 and ankyrin repeat domains 1 protein, FANK1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 120 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin type 3 and ankyrin repeat domains 1 protein, FANK1 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 53.9 bits (128), Expect = 1e-09
Identities = 14/100 (14%), Positives = 28/100 (28%), Gaps = 3/100 (3%)
Query: 14 PGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYV---VEMKDKTGNWEKAVVVPAGET 70
KP ++L W + ++ V+ T
Sbjct: 16 LSKPHPPVVGKVTHHSIELYWDLEQKEKRQGPQEQWLRFSIEEEDPKMHSYGVIYTGYAT 75
Query: 71 SCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPK 110
V GL Y+F+++ + +G E S + +
Sbjct: 76 RHVVEGLEPRTLYKFRLKVTSPSGEYEYSPVVSVATTRES 115
|
| >d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]} Length = 109 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fibroblast growth factor receptor, FGFR species: Human (Homo sapiens), FGFR1 [TaxId: 9606]
Score = 53.4 bits (127), Expect = 1e-09
Identities = 18/106 (16%), Positives = 34/106 (32%), Gaps = 13/106 (12%)
Query: 354 PKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWT----VNGDEVSPDGRIKFETSEN 409
P + + L + + + G + +P W NG + PDG + +
Sbjct: 5 PILQAGLP-ANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKA 63
Query: 410 QTIYRNK--------SAKRATDSGSYTIQLVNTVGSDSASCKVYVV 447
+ D+G YT N++G S + V+
Sbjct: 64 AGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWLTVL 109
|
| >d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]} Length = 109 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fibroblast growth factor receptor, FGFR species: Human (Homo sapiens), FGFR1 [TaxId: 9606]
Score = 38.4 bits (88), Expect = 2e-04
Identities = 21/116 (18%), Positives = 32/116 (27%), Gaps = 13/116 (11%)
Query: 114 PRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHG 173
P + + G F K + K K + G
Sbjct: 5 PILQAGLPANASTVVGGDVEFVCK------VYSDAQPHIQW----IKHVEKNGSKYGPDG 54
Query: 174 WSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVT 229
+ G T K VL I + D G Y+ N++G + SA +T
Sbjct: 55 LPYLKVLKAAGVN---TTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWLT 107
|
| >d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]} Length = 109 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fibroblast growth factor receptor, FGFR species: Human (Homo sapiens), FGFR1 [TaxId: 9606]
Score = 36.5 bits (83), Expect = 0.001
Identities = 11/46 (23%), Positives = 16/46 (34%)
Query: 270 RIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVV 315
L I+N +D+G Y A N GI + V+
Sbjct: 64 AGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWLTVL 109
|
| >d2b5ic1 b.1.2.1 (C:130-224) Cytokine receptor common gamma chain {Human (Homo sapiens) [TaxId: 9606]} Length = 95 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Cytokine receptor common gamma chain species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.0 bits (126), Expect = 2e-09
Identities = 13/86 (15%), Positives = 29/86 (33%), Gaps = 4/86 (4%)
Query: 14 PGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVVVPAGETSCT 73
P P +L + ++L W + ++V+ + + +
Sbjct: 3 PWAPENLTLHKLSESQLELNWNNRFLN---HCLEHLVQYRTDWDHSWT-EQSVDYRHKFS 58
Query: 74 VPGLIEGETYQFQVRAVNAAGPGEAS 99
+P + + Y F+VR+ G A
Sbjct: 59 LPSVDGQKRYTFRVRSRFNPLCGSAQ 84
|
| >d2haza1 b.1.2.1 (A:489-589) Neural cell adhesion molecule 1, NCAM {Human (Homo sapiens) [TaxId: 9606]} Length = 101 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Neural cell adhesion molecule 1, NCAM species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.9 bits (125), Expect = 2e-09
Identities = 23/95 (24%), Positives = 36/95 (37%), Gaps = 5/95 (5%)
Query: 12 DEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGN----WEKAVVVPA 67
D P P+ + + +Q+ P + GG PI Y E + +
Sbjct: 1 DTPSSPSIDQ-VEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEAS 59
Query: 68 GETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPT 102
E T+ GL TY ++ A+N G GE S +
Sbjct: 60 MEGIVTIVGLKPETTYAVRLAALNGKGLGEISAAS 94
|
| >d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 89 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Hemolin species: Moth (Hyalophora cecropia) [TaxId: 7123]
Score = 52.5 bits (125), Expect = 2e-09
Identities = 22/94 (23%), Positives = 33/94 (35%), Gaps = 7/94 (7%)
Query: 353 APKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTI 412
APK + + V G++ TI +G P P +W+ N +S ++
Sbjct: 2 APKYEQKPE-KVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGGRATVTDS-----G 55
Query: 413 YRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYV 446
K K D G Y + N G V V
Sbjct: 56 LVIKGVKN-GDKGYYGCRATNEHGDKYFETLVQV 88
|
| >d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 89 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Hemolin species: Moth (Hyalophora cecropia) [TaxId: 7123]
Score = 40.1 bits (93), Expect = 4e-05
Identities = 22/117 (18%), Positives = 34/117 (29%), Gaps = 31/117 (26%)
Query: 113 APRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNH 172
AP+ ++ + +K GQ + K V P N
Sbjct: 2 APKYEQKPEKVIVVKQGQDVTIPCK----------------VTGL----------PAPNV 35
Query: 173 GWSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVT 229
WS N + G + T +++ L I D G+Y N G V
Sbjct: 36 VWSHNAKPLSGG-----RATVTDSGLVIKGVKNGDKGYYGCRATNEHGDKYFETLVQ 87
|
| >d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 89 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Hemolin species: Moth (Hyalophora cecropia) [TaxId: 7123]
Score = 37.4 bits (86), Expect = 4e-04
Identities = 15/62 (24%), Positives = 20/62 (32%)
Query: 253 AAGTEKPKISLDALIGKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEV 312
G P + T T + L IK D G Y A N++G + V
Sbjct: 27 VTGLPAPNVVWSHNAKPLSGGRATVTDSGLVIKGVKNGDKGYYGCRATNEHGDKYFETLV 86
Query: 313 VV 314
V
Sbjct: 87 QV 88
|
| >d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 93 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Twitchin species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 52.3 bits (124), Expect = 3e-09
Identities = 27/94 (28%), Positives = 42/94 (44%), Gaps = 3/94 (3%)
Query: 353 APKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTI 412
PKI + R + + AG + V F G P PT WTV + + + + T
Sbjct: 2 KPKILTAS--RKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTS 59
Query: 413 YRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYV 446
S + DSG+Y +++ N +G D A +V V
Sbjct: 60 IFFPS-AKRADSGNYKLKVKNELGEDEAIFEVIV 92
|
| >d1owwa_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 93 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin, different Fn3 modules species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.2 bits (124), Expect = 3e-09
Identities = 18/90 (20%), Positives = 34/90 (37%), Gaps = 6/90 (6%)
Query: 17 PTDLEATDWDK--DHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVVVPAG-ETSCT 73
P ++ T+ + +QW P I+ Y++ + K G S T
Sbjct: 3 PVEVFITETPSQPNSHPIQWNAPQPS---HISKYILRWRPKNSVGRWKEATIPGHLNSYT 59
Query: 74 VPGLIEGETYQFQVRAVNAAGPGEASKPTA 103
+ GL G Y+ Q+ ++ G E ++
Sbjct: 60 IKGLKPGVVYEGQLISIQQYGHQEVTRFDF 89
|
| >d1bqua2 b.1.2.1 (A:100-214) Cytokine receptor gp130 cytokine-binding domains {Human (Homo sapiens) [TaxId: 9606]} Length = 115 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Cytokine receptor gp130 cytokine-binding domains species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.4 bits (124), Expect = 4e-09
Identities = 19/105 (18%), Positives = 32/105 (30%), Gaps = 4/105 (3%)
Query: 14 PGKPTDL--EATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVV--VPAGE 69
P P +L ++ + L WT P + + W + +
Sbjct: 5 PNPPHNLSVINSEELSSILKLTWTNPSIKSVIILKYNIQYRTKDASTWSQIPPEDTASTR 64
Query: 70 TSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAP 114
+S TV L Y F++R + G G S + P
Sbjct: 65 SSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASGITYEDRP 109
|
| >d3d48r2 b.1.2.1 (R:101-204) Prolactin receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 104 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Prolactin receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.0 bits (123), Expect = 4e-09
Identities = 20/98 (20%), Positives = 35/98 (35%), Gaps = 9/98 (9%)
Query: 13 EPGKPTDLEAT----DWDKDHVDLQWTPPI---SDGGSPITGYVVEMKDKTGNWEKAVVV 65
+P P +L + K ++ ++W+PP G Y + +K + +
Sbjct: 2 QPDPPLELAVEVKQPEDRKPYLWIKWSPPTLIDLKTGWFTLLYEIRLKPEKAAEWEIHFA 61
Query: 66 PAGETSCTVPGLIEGETYQFQVRAVNAAGP-GEASKPT 102
+T + L G+ Y QVR G S T
Sbjct: 62 GQ-QTEFKILSLHPGQKYLVQVRCKPDHGYWSAWSPAT 98
|
| >d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 91 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Score = 49.8 bits (118), Expect = 1e-08
Identities = 18/94 (19%), Positives = 29/94 (30%), Gaps = 8/94 (8%)
Query: 353 APKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTI 412
AP I + D L G+ T+ G P P W + Q +
Sbjct: 4 APSIKAKFP-ADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSKWLSSEPLLHIQNV 62
Query: 413 YRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYV 446
D G+Y + N G D+ ++ +
Sbjct: 63 DFE-------DEGTYECEAENIKGRDTYQGRIII 89
|
| >d1erna2 b.1.2.1 (A:117-221) Erythropoietin (EPO) receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 105 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Erythropoietin (EPO) receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.0 bits (118), Expect = 2e-08
Identities = 25/99 (25%), Positives = 36/99 (36%), Gaps = 4/99 (4%)
Query: 14 PGKPTDLEATD-WDKDHVDLQWTPPISDGGSPITGYVVEMKDKTG-NWEKAVVVPAGETS 71
P L A + HV L+W PP + Y V++ G + V + G T
Sbjct: 5 LDAPVGLVARLADESGHVVLRWLPPPETPMTSHIRYEVDVSAGNGAGSVQRVEILEGRTE 64
Query: 72 CTVPGLIEGETYQFQVRA--VNAAGPGEASKPTAPIVAK 108
C + L Y F VRA + G S + P+
Sbjct: 65 CVLSNLRGRTRYTFAVRARMAEPSFGGFWSAWSEPVSLL 103
|
| >d1ujta_ b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 120 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: KIAA1568 protein species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.2 bits (119), Expect = 3e-08
Identities = 19/86 (22%), Positives = 28/86 (32%), Gaps = 7/86 (8%)
Query: 21 EATDWDKDHVDLQWTPPISDGGSPITGYVVEMK-----DKTGNWEKAVVVPAGETSCTVP 75
V + WT I GY V + T +W+ E S +
Sbjct: 23 NPVVLTPTTVQVTWTVDRQPQ--FIQGYRVMYRQTSGLQATSSWQNLDAKVPTERSAVLV 80
Query: 76 GLIEGETYQFQVRAVNAAGPGEASKP 101
L +G TY+ +VR G S+
Sbjct: 81 NLKKGVTYEIKVRPYFNEFQGMDSES 106
|
| >d2dtge1 b.1.2.1 (E:808-909) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 102 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Insulin receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.2 bits (116), Expect = 3e-08
Identities = 20/95 (21%), Positives = 32/95 (33%), Gaps = 3/95 (3%)
Query: 14 PGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVVV--PAGETS 71
+ ++ + V L W P G + V + A E
Sbjct: 5 DDIVGPVTHEIFENNVVHLMWQEPKEPNGLIVLYEVSYRRYGDEELHLCDTRKHFALERG 64
Query: 72 CTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIV 106
C + GL Y ++RA + AG G ++PT V
Sbjct: 65 CRLRGL-SPGNYSVRIRATSLAGNGSWTEPTYFYV 98
|
| >d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 89 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Score = 47.2 bits (111), Expect = 1e-07
Identities = 20/93 (21%), Positives = 32/93 (34%), Gaps = 7/93 (7%)
Query: 354 PKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIY 413
P ++ D G + + SG+P+P W +G ++ E
Sbjct: 2 PDWLDVIT--DTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLAS-----QNRIEVSGGE 54
Query: 414 RNKSAKRATDSGSYTIQLVNTVGSDSASCKVYV 446
S DSG Y N G+ AS ++ V
Sbjct: 55 LRFSKLVLEDSGMYQCVAENKHGTVYASAELTV 87
|
| >d1x5ia1 b.1.2.1 (A:8-120) Neogenin {Human (Homo sapiens) [TaxId: 9606]} Length = 113 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Neogenin species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.6 bits (109), Expect = 3e-07
Identities = 21/106 (19%), Positives = 37/106 (34%), Gaps = 8/106 (7%)
Query: 8 KNPFDE---PGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVV 64
++ DE P P+ L + + WTPP + + GY + + + + V
Sbjct: 12 ESDLDETRVPEVPSSLHVRPLV-TSIVVSWTPPENQN-IVVRGYAIGYGIGSPHAQTIKV 69
Query: 65 VPAGETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPK 110
+ T+ L Y ++A N G G V +P
Sbjct: 70 DYK-QRYYTIENLDPSSHYVITLKAFNNVGEGIPL--YESAVTRPH 112
|
| >d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]} Length = 101 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cervical EMMPRIN species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.8 bits (107), Expect = 6e-07
Identities = 17/102 (16%), Positives = 32/102 (31%), Gaps = 9/102 (8%)
Query: 352 GAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGD-------EVSPDGRIKF 404
G P++ + S + GE + P T + R
Sbjct: 1 GPPRVKAVKS--SEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFV 58
Query: 405 ETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYV 446
+S+ ++ ++ D G Y ++ GSD A + V
Sbjct: 59 SSSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRV 100
|
| >d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 103 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Ligand binding domain of trkB receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.4 bits (106), Expect = 7e-07
Identities = 22/104 (21%), Positives = 34/104 (32%), Gaps = 11/104 (10%)
Query: 353 APKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKF-----ETS 407
AP IT S + + I G PKP W NG ++ I +
Sbjct: 4 APTITFLESPT-----SDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHT 58
Query: 408 ENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPS 451
E + + ++G YT+ N G D + + P
Sbjct: 59 EYHGCLQLDNPTHM-NNGDYTLIAKNEYGKDEKQISAHFMGWPG 101
|
| >d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 103 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Ligand binding domain of trkB receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 35.0 bits (79), Expect = 0.004
Identities = 13/40 (32%), Positives = 19/40 (47%)
Query: 280 ASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPG 319
L + N ++G Y + AKN+YG D I + PG
Sbjct: 62 GCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHFMGWPG 101
|
| >d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 107 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: High affinity nerve growth factor receptor TrkA, different domains species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.5 bits (104), Expect = 2e-06
Identities = 22/96 (22%), Positives = 36/96 (37%), Gaps = 6/96 (6%)
Query: 361 SIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAK- 419
S++ T + + I G+P P+ W NG ++ I E E +
Sbjct: 6 SVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCL 65
Query: 420 -----RATDSGSYTIQLVNTVGSDSASCKVYVVDKP 450
++G+YT+ N G SAS +D P
Sbjct: 66 RLNQPTHVNNGNYTLLAANPFGQASASIMAAFMDNP 101
|
| >d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 107 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: High affinity nerve growth factor receptor TrkA, different domains species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.5 bits (91), Expect = 1e-04
Identities = 13/94 (13%), Positives = 23/94 (24%), Gaps = 12/94 (12%)
Query: 237 NVHEGKAYEYRVSAVNAAGTEKPKISL------------DALIGKRIKEFVTSTTASLNI 284
+H + + G P + T L +
Sbjct: 8 QLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRL 67
Query: 285 KNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKP 318
++G Y + A N +G A I + P
Sbjct: 68 NQPTHVNNGNYTLLAANPFGQASASIMAAFMDNP 101
|
| >d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 92 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: High affinity nerve growth factor receptor TrkA, different domains species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.0 bits (102), Expect = 2e-06
Identities = 17/95 (17%), Positives = 28/95 (29%), Gaps = 4/95 (4%)
Query: 352 GAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQT 411
G P + + + +V G++ + GR W + E S
Sbjct: 1 GVPTLKVQVP--NASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPSLGL 58
Query: 412 IYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYV 446
N + + T N VG S +V V
Sbjct: 59 TLANV--TSDLNRKNVTCWAENDVGRAEVSVQVNV 91
|
| >d2cuha1 b.1.2.1 (A:8-109) Tenascin-X {Human (Homo sapiens) [TaxId: 9606]} Length = 102 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Tenascin-X species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.2 bits (103), Expect = 2e-06
Identities = 17/100 (17%), Positives = 28/100 (28%), Gaps = 6/100 (6%)
Query: 14 PGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVVVPAGETSCT 73
P PT L A + + L W PP + + P
Sbjct: 1 PDGPTQLRALNLTEGFAVLHWKPPQNPVDTYDIQVTAPG-----APPLQAETPGSAVDYP 55
Query: 74 VPGLIEGETYQFQVRAVNAAGPGEASKPTAP-IVAKPKNL 112
+ L+ Y VR + + T + P++L
Sbjct: 56 LHDLVLHTNYTATVRGLRGPNLTSPASITFTTGLEAPRDL 95
|
| >d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 92 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Neural cell adhesion molecule (NCAM) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 43.0 bits (100), Expect = 5e-06
Identities = 17/93 (18%), Positives = 30/93 (32%), Gaps = 2/93 (2%)
Query: 355 KITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYR 414
K+ + GE+ I PT IW G +V ++F N +
Sbjct: 1 KLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQI 60
Query: 415 NKSAKRATDSGSYTIQLVNTVGSDSASCKVYVV 447
+ TD G+Y + + + V+
Sbjct: 61 RGI--KKTDEGTYRCEGRILARGEINFKDIQVI 91
|
| >d1wj3a_ b.1.2.1 (A:) Contactin 3 (KIAA1496) {Human (Homo sapiens) [TaxId: 9606]} Length = 117 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Contactin 3 (KIAA1496) species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.2 bits (100), Expect = 6e-06
Identities = 20/99 (20%), Positives = 35/99 (35%), Gaps = 4/99 (4%)
Query: 4 SVLIKNPFDEPGKPTDLEATDWDKDHVDLQWTPPISD-GGSPITGYVVEMKDKTGNWEKA 62
+V + P +P + V L W + S +TGY V + + N +
Sbjct: 8 TVNVTTKKTPPSQPPGNVVWNATDTKVLLNWEQVKAMENESEVTGYKVFYRTSSQNNVQV 67
Query: 63 VVVPAGETSCTVPGLIEGETYQFQVRAVNAAGPGEASKP 101
+ +P E Y +V+A G G +S+
Sbjct: 68 LNTNKTSAELVLP---IKEDYIIEVKATTDGGDGTSSEQ 103
|
| >d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 105 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: NT3 binding domain of trkC receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.6 bits (99), Expect = 7e-06
Identities = 19/87 (21%), Positives = 33/87 (37%), Gaps = 3/87 (3%)
Query: 370 GEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNK---SAKRATDSGS 426
E I G P PT W NG + I E + I + ++G+
Sbjct: 17 RLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGN 76
Query: 427 YTIQLVNTVGSDSASCKVYVVDKPSPP 453
YT+ N +G+ + + + + +P P
Sbjct: 77 YTLIAKNPLGTANQTINGHFLKEPFPV 103
|
| >d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 105 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: NT3 binding domain of trkC receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.9 bits (97), Expect = 2e-05
Identities = 14/94 (14%), Positives = 26/94 (27%), Gaps = 9/94 (9%)
Query: 237 NVHEGKAYEYRVSAVNAAGTEKPKISL---------DALIGKRIKEFVTSTTASLNIKNS 287
++ E + G P + +I + + L
Sbjct: 10 SLEEPELRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKP 69
Query: 288 VRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPP 321
++G Y + AKN G I + +P P
Sbjct: 70 THYNNGNYTLIAKNPLGTANQTINGHFLKEPFPV 103
|
| >d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 84 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Intercellular adhesion molecule-1, ICAM-1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.9 bits (97), Expect = 8e-06
Identities = 15/95 (15%), Positives = 25/95 (26%), Gaps = 14/95 (14%)
Query: 353 APKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTI 412
P++ + T + T G P P +G P G
Sbjct: 2 GPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIGESVT-------- 53
Query: 413 YRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVV 447
G+Y + +T G + V V+
Sbjct: 54 ------VTRDLEGTYLCRARSTQGEVTREVTVNVL 82
|
| >d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 91 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.9 bits (97), Expect = 1e-05
Identities = 17/86 (19%), Positives = 32/86 (37%), Gaps = 2/86 (2%)
Query: 363 RDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNK-SAKRA 421
+TV G+ + G +P W +G V ++ SE I +
Sbjct: 4 VKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVER 63
Query: 422 TDSGSYTIQLVNTVGSD-SASCKVYV 446
+D+G Y Q+ + ++ S + V
Sbjct: 64 SDAGRYWCQVEDGGETEISQPVWLTV 89
|
| >d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 111 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Hemolin species: Moth (Hyalophora cecropia) [TaxId: 7123]
Score = 41.2 bits (95), Expect = 3e-05
Identities = 13/106 (12%), Positives = 24/106 (22%), Gaps = 7/106 (6%)
Query: 356 ITSDLSIRDMTVLAGEEFTITVPFSGRP-KPTPIWTVNGDEVSPDGRIKFETSENQTIY- 413
I S + T + G F + KP W P+ +
Sbjct: 3 IASPAKTHEKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPD 62
Query: 414 -----RNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQ 454
+ + +D Y N + Y + +
Sbjct: 63 GNLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDN 108
|
| >d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 110 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Junction adhesion molecule, JAM, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 40.8 bits (94), Expect = 4e-05
Identities = 17/91 (18%), Positives = 27/91 (29%), Gaps = 8/91 (8%)
Query: 364 DMTVLAGEEFTITVP-FSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRAT 422
+V G +T G P W +G + K N + + +
Sbjct: 11 PSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLI 70
Query: 423 -------DSGSYTIQLVNTVGSDSASCKVYV 446
DSG Y Q N G+ S ++
Sbjct: 71 FDPVTAFDSGEYYCQAQNGYGTAMRSEAAHM 101
|
| >d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 104 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Junction adhesion molecule, JAM, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.4 bits (93), Expect = 5e-05
Identities = 15/90 (16%), Positives = 31/90 (34%), Gaps = 7/90 (7%)
Query: 364 DMTVLAGEEFTIT-VPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAK--- 419
+ G +T G P W +G + + + S + + + +
Sbjct: 11 PSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVF 70
Query: 420 ---RATDSGSYTIQLVNTVGSDSASCKVYV 446
A+D+G Y+ + N G+ S V +
Sbjct: 71 DPLSASDTGEYSCEARNGYGTPMTSNAVRM 100
|
| >d1v5ja_ b.1.2.1 (A:) KIAA1355 {Human (Homo sapiens) [TaxId: 9606]} Length = 108 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: KIAA1355 species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.4 bits (93), Expect = 5e-05
Identities = 21/86 (24%), Positives = 29/86 (33%), Gaps = 1/86 (1%)
Query: 17 PTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVVVPAGETSCTVPG 76
P L A V L W PP + + G V ET VPG
Sbjct: 11 PRGLVAVR-TPRGVLLHWDPPELVPKRLDGYVLEGRQGSQGWEVLDPAVAGTETELLVPG 69
Query: 77 LIEGETYQFQVRAVNAAGPGEASKPT 102
LI+ Y+F++ A + + S
Sbjct: 70 LIKDVLYEFRLVAFAGSFVSDPSNTA 95
|
| >d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 101 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Type-1 interleukin-1 receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.3 bits (93), Expect = 5e-05
Identities = 14/89 (15%), Positives = 24/89 (26%), Gaps = 2/89 (2%)
Query: 364 DMTVLAGEEFTITVPFS-GRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRAT 422
+ A E P + K T W + + +++ AK
Sbjct: 11 ILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKV-E 69
Query: 423 DSGSYTIQLVNTVGSDSASCKVYVVDKPS 451
DSG Y + N+ V+
Sbjct: 70 DSGHYYCVVRNSSYCLRIKISAKFVENEP 98
|
| >d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 107 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Type-1 interleukin-1 receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.4 bits (90), Expect = 1e-04
Identities = 19/105 (18%), Positives = 32/105 (30%), Gaps = 13/105 (12%)
Query: 354 PKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIY 413
P I S + M V G + + +G+ W NG + D + E +
Sbjct: 2 PVIVSPAN-ETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENP 60
Query: 414 RN------------KSAKRATDSGSYTIQLVNTVGSDSASCKVYV 446
N + +T NT G D+A ++
Sbjct: 61 ANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQLIY 105
|
| >d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 94 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cardiac myosin binding protein C, different domains species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.7 bits (89), Expect = 1e-04
Identities = 18/96 (18%), Positives = 29/96 (30%), Gaps = 6/96 (6%)
Query: 353 APKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTI 412
+ L V G + +TV + W NG E+ G S
Sbjct: 5 STAFQKKLE-PAYQVSKGHKIRLTVELAD-HDAEVKWLKNGQEIQMSGSKYIFESIGAKR 62
Query: 413 YRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVD 448
S D +Y VG + S +++V +
Sbjct: 63 TLTISQCSLADDAAYQC----VVGGEKCSTELFVKE 94
|
| >d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 113 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Myosin-binding protein C, slow-type species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.9 bits (89), Expect = 2e-04
Identities = 16/102 (15%), Positives = 30/102 (29%), Gaps = 11/102 (10%)
Query: 363 RDMTVLAGEEFTITV-----PFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKS 417
+ TV GE+ T +P D S G+ + R +
Sbjct: 8 QGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYT 67
Query: 418 AK------RATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPP 453
+ + +G+Y ++ DS S + V +
Sbjct: 68 FEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHESTGTT 109
|
| >d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 113 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Myosin-binding protein C, slow-type species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.3 bits (85), Expect = 6e-04
Identities = 8/54 (14%), Positives = 16/54 (29%)
Query: 268 GKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPP 321
+ + T + I + +G Y+ E D ++ V G
Sbjct: 56 KETFERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHESTGTT 109
|
| >d2cspa1 b.1.2.1 (A:8-124) Rim binding protein 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 117 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Rim binding protein 2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.1 bits (87), Expect = 4e-04
Identities = 19/97 (19%), Positives = 29/97 (29%), Gaps = 4/97 (4%)
Query: 10 PFDEPGKPTDLEAT-DWDKDHVDLQWTPPISDG-GSPITGYVVEMK--DKTGNWEKAVVV 65
P P P D+ + + W PP+ G V K + +
Sbjct: 7 PAGPPAPPQDVTVQAGVTPATIRVSWRPPVLTPTGLSNGANVTGYGVYAKGQRVAEVIFP 66
Query: 66 PAGETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPT 102
A T+ + L E VR ++A G S
Sbjct: 67 TADSTAVELVRLRSLEAKGVTVRTLSAQGESVDSAVA 103
|
| >d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 90 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Myosin-binding protein C, slow-type species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.1 bits (85), Expect = 4e-04
Identities = 18/96 (18%), Positives = 31/96 (32%), Gaps = 8/96 (8%)
Query: 355 KITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYR 414
+T L D T GE + S W NG+E+ P + ++ +
Sbjct: 2 MVTKQL--EDTTAYCGERVELECEVSE-DDANVKWFKNGEEIIPGPKSRYRIRVEGKKHI 58
Query: 415 -NKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDK 449
D+ Y++ +S K+ V K
Sbjct: 59 LIIEGATKADAAEYSVM----TTGGQSSAKLSVDLK 90
|
| >d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 89 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Perlecan Ig3 domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 36.5 bits (83), Expect = 9e-04
Identities = 19/94 (20%), Positives = 31/94 (32%), Gaps = 7/94 (7%)
Query: 354 PKITSDLSIRDMTVLAGEEFTITVP-FSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTI 412
P + + R +V G + T S P T +WT + P + F TI
Sbjct: 1 PIMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAMDFNGI--LTI 58
Query: 413 YRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYV 446
+ + T Y N D + ++V
Sbjct: 59 RNVQPSDAGT----YVCTGSNMFAMDQGTATLHV 88
|
| >d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 110 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cardiac myosin binding protein C, different domains species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.6 bits (83), Expect = 0.001
Identities = 13/98 (13%), Positives = 28/98 (28%), Gaps = 13/98 (13%)
Query: 363 RDMTVLAGEEFTITVPFSGRP---KPT---------PIWTVNGDEVSPDGRIKFETSENQ 410
+D V G T + +G P + + G + +
Sbjct: 12 QDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYL 71
Query: 411 TIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVD 448
A+ A +G Y ++ D ++ + V +
Sbjct: 72 FELHITDAQPA-FTGGYRCEVSTKDKFDCSNFNLTVHE 108
|
| >d1f6fb1 b.1.2.1 (B:5-100) Prolactin receptor {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 96 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Prolactin receptor species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 34.9 bits (80), Expect = 0.003
Identities = 21/83 (25%), Positives = 28/83 (33%), Gaps = 4/83 (4%)
Query: 15 GKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNW-EKAVVVPAGETSCT 73
GKP + DK+ W P +DGG P + K+ E +G SC
Sbjct: 1 GKPEIHKCRSPDKETFTCWWNPG-TDGGLPTNYSLTYSKEGEKTTYECPDYKTSGPNSCF 59
Query: 74 VP--GLIEGETYQFQVRAVNAAG 94
+ Y V A N G
Sbjct: 60 FSKQYTSIWKIYIITVNATNQMG 82
|
| >d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]} Length = 115 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Kin of IRRE-like protein 3, KIRREL3 species: Human (Homo sapiens) [TaxId: 9606]
Score = 35.1 bits (79), Expect = 0.004
Identities = 25/114 (21%), Positives = 37/114 (32%), Gaps = 12/114 (10%)
Query: 350 ITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSEN 409
+ G P I+S + L GE+ I P P I + V G T E
Sbjct: 4 VNGPPIISS---TQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVET 60
Query: 410 QTIYRN-------KSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQGP 456
+ + RA Y N+ GSD+ ++ + S GP
Sbjct: 61 ISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKE--QGSEMSGP 112
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 516 | |||
| d1x5ya1 | 98 | Myosin binding protein C, fast-type {Mouse (Mus mu | 99.63 | |
| d2cqva1 | 101 | Telokin {Human (Homo sapiens) [TaxId: 9606]} | 99.57 | |
| d2vkwa2 | 93 | Neural cell adhesion molecule 1, NCAM {Human (Homo | 99.46 | |
| d1koaa1 | 97 | Twitchin {Nematode (Caenorhabditis elegans) [TaxId | 99.46 | |
| d1x4za1 | 108 | Brother of CDO precursor (BOC) {Mouse (Mus musculu | 99.46 | |
| d1bpva_ | 104 | Type I titin module {Human (Homo sapiens) [TaxId: | 99.45 | |
| d1wiua_ | 93 | Twitchin {Nematode (Caenorhabditis elegans) [TaxId | 99.44 | |
| d1cfba1 | 100 | Neuroglian, two amino proximal Fn3 repeats {Drosop | 99.44 | |
| d2cqva1 | 101 | Telokin {Human (Homo sapiens) [TaxId: 9606]} | 99.42 | |
| d1x3da1 | 105 | Fibronectin type-III domain containing protein 3a, | 99.42 | |
| d1uema_ | 117 | KIAA1568 protein {Human (Homo sapiens) [TaxId: 960 | 99.42 | |
| d1wiua_ | 93 | Twitchin {Nematode (Caenorhabditis elegans) [TaxId | 99.41 | |
| d1koaa1 | 97 | Twitchin {Nematode (Caenorhabditis elegans) [TaxId | 99.41 | |
| d1wfna1 | 106 | Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} | 99.41 | |
| d1wfoa1 | 117 | Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} | 99.4 | |
| d1wf5a1 | 108 | Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} | 99.4 | |
| d2crma1 | 107 | Fibronectin type-III domain containing protein 3a, | 99.4 | |
| d1wisa1 | 111 | Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} | 99.4 | |
| d1fhga_ | 102 | Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103 | 99.4 | |
| d1g1ca_ | 98 | Titin {Human (Homo sapiens), different modules [Ta | 99.39 | |
| d1fhga_ | 102 | Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103 | 99.39 | |
| d2crza1 | 97 | Fibronectin type-III domain containing protein 3a, | 99.38 | |
| d1x5ga1 | 103 | Neogenin {Human (Homo sapiens) [TaxId: 9606]} | 99.38 | |
| d1tnna_ | 91 | Titin {Human (Homo sapiens), different modules [Ta | 99.38 | |
| d1tnna_ | 91 | Titin {Human (Homo sapiens), different modules [Ta | 99.38 | |
| d1cs6a4 | 89 | Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} | 99.37 | |
| d1x5fa1 | 107 | Neogenin {Human (Homo sapiens) [TaxId: 9606]} | 99.36 | |
| d2ibga1 | 95 | Hedgehog receptor iHog {Fruit fly (Drosophila mela | 99.36 | |
| d1x5xa1 | 96 | Fibronectin type-III domain containing protein 3a, | 99.36 | |
| d1g1ca_ | 98 | Titin {Human (Homo sapiens), different modules [Ta | 99.36 | |
| d2haza1 | 101 | Neural cell adhesion molecule 1, NCAM {Human (Homo | 99.35 | |
| d1cs6a4 | 89 | Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} | 99.32 | |
| d2ic2a1 | 107 | Hedgehog receptor iHog {Fruit fly (Drosophila mela | 99.32 | |
| d1biha4 | 89 | Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} | 99.3 | |
| d1x5ha1 | 119 | Neogenin {Human (Homo sapiens) [TaxId: 9606]} | 99.3 | |
| d1x4xa1 | 93 | Fibronectin type-III domain containing protein 3a, | 99.3 | |
| d3dara1 | 97 | Fibroblast growth factor receptor, FGFR {Human (Ho | 99.3 | |
| d1x5la1 | 98 | Ephrin type-A receptor 8 {Human (Homo sapiens) [Ta | 99.28 | |
| d1qg3a2 | 103 | Integrin beta-4 subunit {Human (Homo sapiens) [Tax | 99.28 | |
| d1rhfa1 | 91 | Tyrosine-protein kinase receptor tyro3, N-terminal | 99.27 | |
| d1qz1a3 | 100 | Neural cell adhesion molecule (NCAM) {Rat (Rattus | 99.27 | |
| d1x5za1 | 102 | Receptor-type tyrosine-protein phosphatase delta, | 99.27 | |
| d1x5aa1 | 94 | Ephrin type-A receptor 1 {Mouse (Mus musculus) [Ta | 99.27 | |
| d2fnba_ | 95 | Fibronectin, different Fn3 modules {Human (Homo sa | 99.26 | |
| d2d9qb2 | 105 | Granulocyte colony-stimulating factor (GC-SF) rece | 99.26 | |
| d1cd9b2 | 106 | Granulocyte colony-stimulating factor (GC-SF) rece | 99.26 | |
| d1biha4 | 89 | Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} | 99.26 | |
| d1cfba2 | 105 | Neuroglian, two amino proximal Fn3 repeats {Drosop | 99.25 | |
| d1cs6a3 | 91 | Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} | 99.22 | |
| d1n26a3 | 104 | Interleukin-6 receptor alpha chain, domains 2 and | 99.22 | |
| d1qg3a1 | 92 | Integrin beta-4 subunit {Human (Homo sapiens) [Tax | 99.21 | |
| d1fnfa3 | 89 | Fibronectin, different Fn3 modules {Human (Homo sa | 99.2 | |
| d1cs6a3 | 91 | Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} | 99.2 | |
| d1ueya_ | 127 | KIAA0343 protein {Human (Homo sapiens) [TaxId: 960 | 99.2 | |
| d1biha3 | 97 | Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} | 99.2 | |
| d1qz1a3 | 100 | Neural cell adhesion molecule (NCAM) {Rat (Rattus | 99.18 | |
| d1wwca_ | 105 | NT3 binding domain of trkC receptor {Human (Homo s | 99.18 | |
| d1wfua_ | 120 | Fibronectin type 3 and ankyrin repeat domains 1 pr | 99.18 | |
| d1gxea_ | 130 | Cardiac myosin binding protein C, different domain | 99.18 | |
| d1tena_ | 90 | Tenascin {Human (Homo sapiens) [TaxId: 9606]} | 99.18 | |
| d1vcaa2 | 90 | Vascular cell adhesion molecule-1 (VCAM-1) {Human | 99.18 | |
| d1wwbx_ | 103 | Ligand binding domain of trkB receptor {Human (Hom | 99.18 | |
| d1vcaa2 | 90 | Vascular cell adhesion molecule-1 (VCAM-1) {Human | 99.17 | |
| d3dara1 | 97 | Fibroblast growth factor receptor, FGFR {Human (Ho | 99.17 | |
| d1epfa2 | 92 | Neural cell adhesion molecule (NCAM) {Rat (Rattus | 99.16 | |
| d1epfa2 | 92 | Neural cell adhesion molecule (NCAM) {Rat (Rattus | 99.16 | |
| d3b5ha1 | 101 | Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960 | 99.16 | |
| d1rhfa1 | 91 | Tyrosine-protein kinase receptor tyro3, N-terminal | 99.15 | |
| d2djsa1 | 95 | Ephrin type-B receptor 1 {Human (Homo sapiens) [Ta | 99.15 | |
| d1x5ka1 | 111 | Neogenin {Human (Homo sapiens) [TaxId: 9606]} | 99.15 | |
| d1fnfa2 | 91 | Fibronectin, different Fn3 modules {Human (Homo sa | 99.14 | |
| d1gl4b_ | 89 | Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: | 99.14 | |
| d2nxyb2 | 84 | CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9 | 99.14 | |
| d1fnha3 | 89 | Fibronectin, different Fn3 modules {Human (Homo sa | 99.14 | |
| d1gxea_ | 130 | Cardiac myosin binding protein C, different domain | 99.14 | |
| d1gl4b_ | 89 | Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: | 99.14 | |
| d2dn7a1 | 94 | Receptor-type tyrosine-protein phosphatase F, PTPR | 99.14 | |
| d1wj3a_ | 117 | Contactin 3 (KIAA1496) {Human (Homo sapiens) [TaxI | 99.13 | |
| d1f6fb2 | 103 | Prolactin receptor {Rat (Rattus norvegicus) [TaxId | 99.13 | |
| d1erna2 | 105 | Erythropoietin (EPO) receptor {Human (Homo sapiens | 99.13 | |
| d1tiua_ | 89 | Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxI | 99.13 | |
| d1qr4a2 | 88 | Tenascin {Chicken (Gallus gallus) [TaxId: 9031]} | 99.13 | |
| d2oz4a3 | 84 | Intercellular adhesion molecule-1, ICAM-1 {Human ( | 99.13 | |
| d2fdbp2 | 109 | Fibroblast growth factor receptor, FGFR {Human (Ho | 99.13 | |
| d1fnaa_ | 91 | Fibronectin, different Fn3 modules {Human (Homo sa | 99.13 | |
| d1cs6a2 | 105 | Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} | 99.13 | |
| d1biha3 | 97 | Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} | 99.13 | |
| d1x5ia1 | 113 | Neogenin {Human (Homo sapiens) [TaxId: 9606]} | 99.13 | |
| d2dava1 | 113 | Myosin-binding protein C, slow-type {Human (Homo s | 99.12 | |
| d2nxyb2 | 84 | CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9 | 99.12 | |
| d1iarb2 | 101 | Interleukin-4 receptor alpha chain {Human (Homo sa | 99.12 | |
| d1biha1 | 94 | Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} | 99.12 | |
| d3b5ha1 | 101 | Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960 | 99.11 | |
| d1va9a1 | 109 | Down syndrome cell adhesion molecule-like protein | 99.11 | |
| d1j8ka_ | 94 | Fibronectin, different Fn3 modules {Human (Homo sa | 99.11 | |
| d1v5ja_ | 108 | KIAA1355 {Human (Homo sapiens) [TaxId: 9606]} | 99.1 | |
| d1fnha2 | 90 | Fibronectin, different Fn3 modules {Human (Homo sa | 99.1 | |
| d1x44a1 | 90 | Myosin-binding protein C, slow-type {Human (Homo s | 99.09 | |
| d1pd6a_ | 94 | Cardiac myosin binding protein C, different domain | 99.09 | |
| d1x5ja1 | 100 | Neogenin {Human (Homo sapiens) [TaxId: 9606]} | 99.09 | |
| d2fdbp2 | 109 | Fibroblast growth factor receptor, FGFR {Human (Ho | 99.09 | |
| d1gsma1 | 90 | Mucosal addressin cell adhesion molecule-1 (MADCAM | 99.09 | |
| d2b5ic1 | 95 | Cytokine receptor common gamma chain {Human (Homo | 99.09 | |
| d1he7a_ | 107 | High affinity nerve growth factor receptor TrkA, d | 99.08 | |
| d1l6za2 | 96 | Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-t | 99.08 | |
| d2cuha1 | 102 | Tenascin-X {Human (Homo sapiens) [TaxId: 9606]} | 99.08 | |
| d1tdqa1 | 93 | Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]} | 99.08 | |
| d1x44a1 | 90 | Myosin-binding protein C, slow-type {Human (Homo s | 99.07 | |
| d2ifga1 | 92 | High affinity nerve growth factor receptor TrkA, d | 99.07 | |
| d1bqua1 | 95 | Cytokine receptor gp130 cytokine-binding domains { | 99.07 | |
| d1rhfa2 | 85 | Tyrosine-protein kinase receptor tyro3, second dom | 99.06 | |
| d1k85a_ | 88 | Fibronectin type III domain from chitinase A1. {Ba | 99.06 | |
| d1gsma1 | 90 | Mucosal addressin cell adhesion molecule-1 (MADCAM | 99.06 | |
| d1qr4a1 | 87 | Tenascin {Chicken (Gallus gallus) [TaxId: 9031]} | 99.05 | |
| d2avga1 | 110 | Cardiac myosin binding protein C, different domain | 99.05 | |
| d2b5ib2 | 104 | Interleukin-2 receptor beta chain {Human (Homo sap | 99.05 | |
| d1bqua2 | 115 | Cytokine receptor gp130 cytokine-binding domains { | 99.05 | |
| d1epfa1 | 97 | Neural cell adhesion molecule (NCAM) {Rat (Rattus | 99.05 | |
| d1fnfa1 | 94 | Fibronectin, different Fn3 modules {Human (Homo sa | 99.04 | |
| d1cs6a2 | 105 | Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} | 99.04 | |
| d1x4ya1 | 101 | Brother of CDO precursor (BOC) {Mouse (Mus musculu | 99.04 | |
| d1tdqa3 | 86 | Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]} | 99.03 | |
| d1owwa_ | 93 | Fibronectin, different Fn3 modules {Human (Homo sa | 99.02 | |
| d1tdqa2 | 92 | Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]} | 99.02 | |
| d1biha1 | 94 | Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} | 99.02 | |
| d1fnha1 | 90 | Fibronectin, different Fn3 modules {Human (Homo sa | 99.01 | |
| d1wfta_ | 123 | Host cell factor 2, HCF-2 {Mouse (Mus musculus) [T | 99.01 | |
| d3d48r2 | 104 | Prolactin receptor {Human (Homo sapiens) [TaxId: 9 | 99.01 | |
| d1n26a1 | 93 | Interleukin-6 receptor alpha chain, N-terminal dom | 99.01 | |
| d2avga1 | 110 | Cardiac myosin binding protein C, different domain | 99.01 | |
| d1axib2 | 106 | Growth hormone receptor {Human (Homo sapiens) [Tax | 99.01 | |
| d1tiua_ | 89 | Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxI | 99.01 | |
| d1rhfa2 | 85 | Tyrosine-protein kinase receptor tyro3, second dom | 98.99 | |
| d2ifga1 | 92 | High affinity nerve growth factor receptor TrkA, d | 98.99 | |
| d2aw2a1 | 104 | B- and T-lymphocyte attenuator CD272 {Human (Homo | 98.99 | |
| d1cs6a1 | 97 | Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} | 98.99 | |
| d2c9aa1 | 96 | Receptor-type tyrosine-protein phosphatase mu {Hum | 98.99 | |
| d2oz4a3 | 84 | Intercellular adhesion molecule-1, ICAM-1 {Human ( | 98.99 | |
| d1wwbx_ | 103 | Ligand binding domain of trkB receptor {Human (Hom | 98.98 | |
| d2cuma1 | 93 | Tenascin-X {Human (Homo sapiens) [TaxId: 9606]} | 98.98 | |
| d2c9aa1 | 96 | Receptor-type tyrosine-protein phosphatase mu {Hum | 98.98 | |
| d2dava1 | 113 | Myosin-binding protein C, slow-type {Human (Homo s | 98.96 | |
| d1nbqa2 | 104 | Junction adhesion molecule, JAM, C-terminal domain | 98.96 | |
| d1cs6a1 | 97 | Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} | 98.95 | |
| d1epfa1 | 97 | Neural cell adhesion molecule (NCAM) {Rat (Rattus | 98.95 | |
| d1l6za2 | 96 | Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-t | 98.94 | |
| d1iray3 | 107 | Type-1 interleukin-1 receptor {Human (Homo sapiens | 98.94 | |
| d1pd6a_ | 94 | Cardiac myosin binding protein C, different domain | 98.94 | |
| d1wk0a_ | 137 | Fibronectin type-III domain containing protein 3a, | 98.94 | |
| d1olza1 | 92 | Semaphorin 4d Ig-like domain {Human (Homo sapiens) | 98.93 | |
| d1wwca_ | 105 | NT3 binding domain of trkC receptor {Human (Homo s | 98.93 | |
| d1f2qa2 | 89 | IgE high affinity receptor alpha subunit {Human (H | 98.92 | |
| d2aw2a1 | 104 | B- and T-lymphocyte attenuator CD272 {Human (Homo | 98.92 | |
| d2fcba2 | 88 | Fc gamma receptor ectodomain (CD32) {Human (Homo s | 98.92 | |
| d1f97a2 | 110 | Junction adhesion molecule, JAM, C-terminal domain | 98.91 | |
| d1iray3 | 107 | Type-1 interleukin-1 receptor {Human (Homo sapiens | 98.91 | |
| d1nbqa1 | 105 | Junction adhesion molecule, JAM, N-terminal domain | 98.91 | |
| d2gysa2 | 114 | Common beta-chain in the GM-CSF, IL-3 and IL-5 rec | 98.9 | |
| d1he7a_ | 107 | High affinity nerve growth factor receptor TrkA, d | 98.9 | |
| d1olza1 | 92 | Semaphorin 4d Ig-like domain {Human (Homo sapiens) | 98.88 | |
| d1uena_ | 125 | KIAA0343 protein {Human (Homo sapiens) [TaxId: 960 | 98.87 | |
| d2cuia1 | 101 | Tenascin-X {Human (Homo sapiens) [TaxId: 9606]} | 98.87 | |
| d1f97a1 | 102 | Junction adhesion molecule, JAM, N-terminal domain | 98.87 | |
| d1iray2 | 103 | Type-1 interleukin-1 receptor {Human (Homo sapiens | 98.86 | |
| d1fnla2 | 89 | Fc gamma receptor ectodomain (CD32) {Human (Homo s | 98.86 | |
| d1uc6a_ | 109 | Ciliary neurotrophic factor receptor alpha {Human | 98.86 | |
| d2gysa4 | 100 | Common beta-chain in the GM-CSF, IL-3 and IL-5 rec | 98.85 | |
| d1iray1 | 101 | Type-1 interleukin-1 receptor {Human (Homo sapiens | 98.84 | |
| d2cspa1 | 117 | Rim binding protein 2 {Human (Homo sapiens) [TaxId | 98.84 | |
| d1f97a2 | 110 | Junction adhesion molecule, JAM, C-terminal domain | 98.84 | |
| d2fcba2 | 88 | Fc gamma receptor ectodomain (CD32) {Human (Homo s | 98.83 | |
| d1fnla2 | 89 | Fc gamma receptor ectodomain (CD32) {Human (Homo s | 98.82 | |
| d1iray1 | 101 | Type-1 interleukin-1 receptor {Human (Homo sapiens | 98.81 | |
| d1nbqa1 | 105 | Junction adhesion molecule, JAM, N-terminal domain | 98.8 | |
| d1nbqa2 | 104 | Junction adhesion molecule, JAM, C-terminal domain | 98.8 | |
| d2dtge3 | 125 | Insulin receptor {Human (Homo sapiens) [TaxId: 960 | 98.78 | |
| d1fnla1 | 84 | Fc gamma receptor ectodomain (CD32) {Human (Homo s | 98.77 | |
| d1n26a1 | 93 | Interleukin-6 receptor alpha chain, N-terminal dom | 98.77 | |
| d1fyhb1 | 98 | Interferon-gamma receptor alpha chain {Human (Homo | 98.77 | |
| d1iray2 | 103 | Type-1 interleukin-1 receptor {Human (Homo sapiens | 98.76 | |
| d2fcba1 | 85 | Fc gamma receptor ectodomain (CD32) {Human (Homo s | 98.76 | |
| d1f97a1 | 102 | Junction adhesion molecule, JAM, N-terminal domain | 98.75 | |
| d2dtge1 | 102 | Insulin receptor {Human (Homo sapiens) [TaxId: 960 | 98.75 | |
| d1cd9b1 | 107 | Granulocyte colony-stimulating factor (GC-SF) rece | 98.74 | |
| d2crya1 | 115 | Kin of IRRE-like protein 3, KIRREL3 {Human (Homo s | 98.73 | |
| d1f2qa1 | 82 | IgE high affinity receptor alpha subunit {Human (H | 98.72 | |
| d1ujta_ | 120 | KIAA1568 protein {Human (Homo sapiens) [TaxId: 960 | 98.71 | |
| d1f2qa2 | 89 | IgE high affinity receptor alpha subunit {Human (H | 98.68 | |
| d2crya1 | 115 | Kin of IRRE-like protein 3, KIRREL3 {Human (Homo s | 98.67 | |
| d2dtge2 | 196 | Insulin receptor {Human (Homo sapiens) [TaxId: 960 | 98.65 | |
| d3d85d3 | 94 | The p40 domain of interleukin-12 (IL-12 beta chain | 98.62 | |
| d1y6kr1 | 99 | Interleukin-10 receptor 1, IL-10R1 {Human (Homo sa | 98.61 | |
| d1iama1 | 103 | Intercellular cell adhesion molecule-1 (ICAM-1) {H | 98.61 | |
| d2fcba1 | 85 | Fc gamma receptor ectodomain (CD32) {Human (Homo s | 98.6 | |
| d1ccza1 | 93 | CD2-binding domain of CD58, N-terminal domain {Hum | 98.6 | |
| d1biha2 | 111 | Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} | 98.59 | |
| d1iama1 | 103 | Intercellular cell adhesion molecule-1 (ICAM-1) {H | 98.58 | |
| d1fnla1 | 84 | Fc gamma receptor ectodomain (CD32) {Human (Homo s | 98.57 | |
| d1biha2 | 111 | Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} | 98.55 | |
| d1zxqa1 | 106 | Intercellular cell adhesion molecule-2 (ICAM-2) {H | 98.54 | |
| d1f2qa1 | 82 | IgE high affinity receptor alpha subunit {Human (H | 98.51 | |
| d1zxqa1 | 106 | Intercellular cell adhesion molecule-2 (ICAM-2) {H | 98.43 | |
| d2crza1 | 97 | Fibronectin type-III domain containing protein 3a, | 98.39 | |
| d1ccza1 | 93 | CD2-binding domain of CD58, N-terminal domain {Hum | 98.38 | |
| d1x5xa1 | 96 | Fibronectin type-III domain containing protein 3a, | 98.32 | |
| d1x5ya1 | 98 | Myosin binding protein C, fast-type {Mouse (Mus mu | 98.29 | |
| d2crma1 | 107 | Fibronectin type-III domain containing protein 3a, | 98.27 | |
| d1wf5a1 | 108 | Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} | 98.25 | |
| d1wfua_ | 120 | Fibronectin type 3 and ankyrin repeat domains 1 pr | 98.2 | |
| d1pkoa_ | 126 | Myelin oligodendrocyte glycoprotein (MOG) {Rat (Ra | 98.17 | |
| d1pkoa_ | 126 | Myelin oligodendrocyte glycoprotein (MOG) {Rat (Ra | 98.15 | |
| d1x5fa1 | 107 | Neogenin {Human (Homo sapiens) [TaxId: 9606]} | 98.14 | |
| d2haza1 | 101 | Neural cell adhesion molecule 1, NCAM {Human (Homo | 98.14 | |
| d2djsa1 | 95 | Ephrin type-B receptor 1 {Human (Homo sapiens) [Ta | 98.12 | |
| d1wfoa1 | 117 | Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} | 98.11 | |
| d1hnga1 | 98 | CD2, first domain {Rat (Rattus norvegicus) [TaxId: | 98.11 | |
| d1wfna1 | 106 | Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} | 98.11 | |
| d2vkwa2 | 93 | Neural cell adhesion molecule 1, NCAM {Human (Homo | 98.1 | |
| d1x4xa1 | 93 | Fibronectin type-III domain containing protein 3a, | 98.07 | |
| d1uema_ | 117 | KIAA1568 protein {Human (Homo sapiens) [TaxId: 960 | 98.04 | |
| d2cuha1 | 102 | Tenascin-X {Human (Homo sapiens) [TaxId: 9606]} | 97.98 | |
| d1bpva_ | 104 | Type I titin module {Human (Homo sapiens) [TaxId: | 97.96 | |
| d2dn7a1 | 94 | Receptor-type tyrosine-protein phosphatase F, PTPR | 97.95 | |
| d1hnga1 | 98 | CD2, first domain {Rat (Rattus norvegicus) [TaxId: | 97.93 | |
| d1eaja_ | 124 | Coxsackie virus and adenovirus receptor (Car), dom | 97.92 | |
| d1x5aa1 | 94 | Ephrin type-A receptor 1 {Mouse (Mus musculus) [Ta | 97.89 | |
| d1x5la1 | 98 | Ephrin type-A receptor 8 {Human (Homo sapiens) [Ta | 97.88 | |
| d1qg3a2 | 103 | Integrin beta-4 subunit {Human (Homo sapiens) [Tax | 97.88 | |
| d2ibga1 | 95 | Hedgehog receptor iHog {Fruit fly (Drosophila mela | 97.87 | |
| d1x5ga1 | 103 | Neogenin {Human (Homo sapiens) [TaxId: 9606]} | 97.86 | |
| d2bnqd1 | 113 | T-cell antigen receptor {Human (Homo sapiens), alp | 97.85 | |
| d1j1pl_ | 107 | Immunoglobulin light chain kappa variable domain, | 97.85 | |
| d1i8ka_ | 106 | Immunoglobulin light chain kappa variable domain, | 97.85 | |
| d1xeda_ | 116 | Polymeric-immunoglobulin receptor, PIGR {Human (Ho | 97.84 | |
| d1eaja_ | 124 | Coxsackie virus and adenovirus receptor (Car), dom | 97.84 | |
| d2esvd1 | 110 | T-cell antigen receptor {Human (Homo sapiens), alp | 97.83 | |
| d2nxyb1 | 97 | CD4 V-set domains {Human (Homo sapiens) [TaxId: 96 | 97.83 | |
| d8faba1 | 103 | Immunoglobulin light chain lambda variable domain, | 97.81 | |
| d1ospl1 | 107 | Immunoglobulin light chain kappa variable domain, | 97.81 | |
| d1nezg_ | 122 | CD8 {Mouse (Mus musculus) [TaxId: 10090]} | 97.8 | |
| d1x4za1 | 108 | Brother of CDO precursor (BOC) {Mouse (Mus musculu | 97.8 | |
| d1a0ql1 | 106 | Immunoglobulin light chain kappa variable domain, | 97.8 | |
| d1x5za1 | 102 | Receptor-type tyrosine-protein phosphatase delta, | 97.8 | |
| d1c5cl1 | 107 | Immunoglobulin light chain kappa variable domain, | 97.79 | |
| d1neua_ | 119 | Myelin membrane adhesion molecule P0 {Rat (Rattus | 97.78 | |
| d1x5ka1 | 111 | Neogenin {Human (Homo sapiens) [TaxId: 9606]} | 97.77 | |
| d1a0ql1 | 106 | Immunoglobulin light chain kappa variable domain, | 97.77 | |
| d2ic2a1 | 107 | Hedgehog receptor iHog {Fruit fly (Drosophila mela | 97.77 | |
| d1x3da1 | 105 | Fibronectin type-III domain containing protein 3a, | 97.76 | |
| d1lk3l1 | 106 | Immunoglobulin light chain kappa variable domain, | 97.76 | |
| d1mexl1 | 107 | Immunoglobulin light chain kappa variable domain, | 97.74 | |
| d1hkfa_ | 108 | NK cell activating receptor NKP44 {Human (Homo sap | 97.74 | |
| d1op3k1 | 106 | Immunoglobulin light chain kappa variable domain, | 97.72 | |
| d1kcvl1 | 107 | Immunoglobulin light chain kappa variable domain, | 97.72 | |
| d2cdea1 | 114 | T-cell antigen receptor {Human (Homo sapiens), bet | 97.71 | |
| d1cfba1 | 100 | Neuroglian, two amino proximal Fn3 repeats {Drosop | 97.7 | |
| d1tjgl1 | 107 | Immunoglobulin light chain kappa variable domain, | 97.7 | |
| d1ospl1 | 107 | Immunoglobulin light chain kappa variable domain, | 97.7 | |
| d1l6za1 | 107 | Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-t | 97.7 | |
| d1c5cl1 | 107 | Immunoglobulin light chain kappa variable domain, | 97.69 | |
| d3bp5a1 | 114 | Programmed cell death protein 1, PD1, extracellula | 97.69 | |
| d1kcvl1 | 107 | Immunoglobulin light chain kappa variable domain, | 97.69 | |
| d1kgcd1 | 112 | T-cell antigen receptor {Human (Homo sapiens), alp | 97.68 | |
| d1d5il1 | 107 | Immunoglobulin light chain kappa variable domain, | 97.67 | |
| d1rzfl1 | 111 | Immunoglobulin light chain lambda variable domain, | 97.67 | |
| d1jhll_ | 108 | Immunoglobulin light chain kappa variable domain, | 97.66 | |
| d1mqkl_ | 109 | Immunoglobulin light chain kappa variable domain, | 97.66 | |
| d1ncna_ | 110 | CD86 (b7-2), N-terminal domain {Human (Homo sapien | 97.66 | |
| d1lp9e1 | 115 | T-cell antigen receptor {Mouse (Mus musculus), alp | 97.65 | |
| d1i8ka_ | 106 | Immunoglobulin light chain kappa variable domain, | 97.63 | |
| d2fx7l1 | 108 | Immunoglobulin light chain kappa variable domain, | 97.63 | |
| d1akjd_ | 114 | CD8 {Human (Homo sapiens) [TaxId: 9606]} | 97.62 | |
| d3bp5a1 | 114 | Programmed cell death protein 1, PD1, extracellula | 97.61 | |
| d1tjgl1 | 107 | Immunoglobulin light chain kappa variable domain, | 97.61 | |
| d1ucta1 | 99 | Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa | 97.61 | |
| d1dr9a1 | 105 | CD80, N-terminal domain {Human (Homo sapiens) [Tax | 97.61 | |
| d1w72l1 | 109 | Immunoglobulin light chain lambda variable domain, | 97.6 | |
| d1j1pl_ | 107 | Immunoglobulin light chain kappa variable domain, | 97.6 | |
| d1mexl1 | 107 | Immunoglobulin light chain kappa variable domain, | 97.59 | |
| d3cx5k1 | 107 | Immunoglobulin light chain kappa variable domain, | 97.59 | |
| d1xeda_ | 116 | Polymeric-immunoglobulin receptor, PIGR {Human (Ho | 97.58 | |
| d1bwwa_ | 109 | Immunoglobulin light chain kappa variable domain, | 97.58 | |
| d1olla1 | 95 | Ligand binding domain of NK receptor NKp46 {Human | 97.57 | |
| d1ucta1 | 99 | Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa | 97.57 | |
| d2rhea_ | 114 | Immunoglobulin light chain lambda variable domain, | 97.57 | |
| d1nfde1 | 108 | Immunoglobulin light chain lambda variable domain, | 97.57 | |
| d1sq2n_ | 112 | Novel antigen receptor (against lysozyme) {Nurse s | 97.56 | |
| d1wk0a_ | 137 | Fibronectin type-III domain containing protein 3a, | 97.56 | |
| d1x5ha1 | 119 | Neogenin {Human (Homo sapiens) [TaxId: 9606]} | 97.56 | |
| d1jhll_ | 108 | Immunoglobulin light chain kappa variable domain, | 97.55 | |
| d1tvda_ | 116 | T-cell antigen receptor {Human (Homo sapiens), del | 97.55 | |
| d1lgva1 | 112 | Immunoglobulin light chain lambda variable domain, | 97.55 | |
| d1u3ha1 | 110 | T-cell antigen receptor {Mouse (Mus musculus), alp | 97.54 | |
| d1j8hd1 | 115 | T-cell antigen receptor {Human (Homo sapiens), alp | 97.54 | |
| d1k85a_ | 88 | Fibronectin type III domain from chitinase A1. {Ba | 97.53 | |
| d2ak4d1 | 114 | T-cell antigen receptor {Human (Homo sapiens), alp | 97.53 | |
| d1oaql_ | 110 | Immunoglobulin light chain lambda variable domain, | 97.52 | |
| d1op3k1 | 106 | Immunoglobulin light chain kappa variable domain, | 97.52 | |
| d1d5il1 | 107 | Immunoglobulin light chain kappa variable domain, | 97.52 | |
| d1lk3l1 | 106 | Immunoglobulin light chain kappa variable domain, | 97.49 | |
| d1wfta_ | 123 | Host cell factor 2, HCF-2 {Mouse (Mus musculus) [T | 97.48 | |
| d1olla1 | 95 | Ligand binding domain of NK receptor NKp46 {Human | 97.47 | |
| d2gsia1 | 111 | Immunoglobulin light chain kappa variable domain, | 97.46 | |
| d1wj3a_ | 117 | Contactin 3 (KIAA1496) {Human (Homo sapiens) [TaxI | 97.46 | |
| d8faba1 | 103 | Immunoglobulin light chain lambda variable domain, | 97.46 | |
| d1uena_ | 125 | KIAA0343 protein {Human (Homo sapiens) [TaxId: 960 | 97.45 | |
| d1vesa_ | 113 | Novel antigen receptor 12Y-2 {Spotted wobbegong (O | 97.45 | |
| d1fo0a_ | 115 | T-cell antigen receptor {Mouse (Mus musculus), alp | 97.44 | |
| d1lp9e1 | 115 | T-cell antigen receptor {Mouse (Mus musculus), alp | 97.44 | |
| d2bnqd1 | 113 | T-cell antigen receptor {Human (Homo sapiens), alp | 97.43 | |
| d1x5ia1 | 113 | Neogenin {Human (Homo sapiens) [TaxId: 9606]} | 97.43 | |
| d2g5ra1 | 121 | N-terminal domain of sialic acid binding Ig-like l | 97.42 | |
| d1i9ea_ | 115 | T-cell antigen receptor {Mouse (Mus musculus), alp | 97.42 | |
| d2ij0c1 | 118 | T-cell antigen receptor {Human (Homo sapiens), bet | 97.42 | |
| d1bd2d1 | 111 | T-cell antigen receptor {Human (Homo sapiens), alp | 97.41 | |
| d1j05a_ | 111 | Immunoglobulin light chain kappa variable domain, | 97.41 | |
| d1mjul1 | 112 | Immunoglobulin light chain kappa variable domain, | 97.41 | |
| d1lgva1 | 112 | Immunoglobulin light chain lambda variable domain, | 97.4 | |
| d2esvd1 | 110 | T-cell antigen receptor {Human (Homo sapiens), alp | 97.39 | |
| d1bwwa_ | 109 | Immunoglobulin light chain kappa variable domain, | 97.39 | |
| d1q9ra1 | 113 | Immunoglobulin light chain kappa variable domain, | 97.39 | |
| d2gj6d1 | 94 | T-cell antigen receptor {Mouse (Mus musculus), bet | 97.39 | |
| d1f3rb2 | 119 | Immunoglobulin light chain kappa variable domain, | 97.38 | |
| d1yqvl1 | 104 | Immunoglobulin light chain kappa variable domain, | 97.37 | |
| d1ogad1 | 115 | T-cell antigen receptor {Human (Homo sapiens), alp | 97.37 | |
| d1mqkl_ | 109 | Immunoglobulin light chain kappa variable domain, | 97.37 | |
| d1ogad1 | 115 | T-cell antigen receptor {Human (Homo sapiens), alp | 97.36 | |
| d2rhea_ | 114 | Immunoglobulin light chain lambda variable domain, | 97.36 | |
| d2gsia1 | 111 | Immunoglobulin light chain kappa variable domain, | 97.36 | |
| d1x4ya1 | 101 | Brother of CDO precursor (BOC) {Mouse (Mus musculu | 97.36 | |
| d2cdea1 | 114 | T-cell antigen receptor {Human (Homo sapiens), bet | 97.33 | |
| d1akjd_ | 114 | CD8 {Human (Homo sapiens) [TaxId: 9606]} | 97.33 | |
| d1qg3a1 | 92 | Integrin beta-4 subunit {Human (Homo sapiens) [Tax | 97.33 | |
| d1qfoa_ | 118 | N-terminal domain of sialoadhesin {Mouse (Mus musc | 97.33 | |
| d1hkfa_ | 108 | NK cell activating receptor NKP44 {Human (Homo sap | 97.33 | |
| d1rzfl1 | 111 | Immunoglobulin light chain lambda variable domain, | 97.32 | |
| d1w72l1 | 109 | Immunoglobulin light chain lambda variable domain, | 97.32 | |
| d1neua_ | 119 | Myelin membrane adhesion molecule P0 {Rat (Rattus | 97.32 | |
| d2aq2a1 | 110 | T-cell antigen receptor {Mouse (Mus musculus), bet | 97.31 | |
| d1n4xl_ | 113 | Immunoglobulin light chain kappa variable domain, | 97.29 | |
| d1yqvl1 | 104 | Immunoglobulin light chain kappa variable domain, | 97.29 | |
| d1nezg_ | 122 | CD8 {Mouse (Mus musculus) [TaxId: 10090]} | 97.28 | |
| d1ncwl1 | 112 | Immunoglobulin light chain kappa variable domain, | 97.28 | |
| d3cx5k1 | 107 | Immunoglobulin light chain kappa variable domain, | 97.28 | |
| d2fx7l1 | 108 | Immunoglobulin light chain kappa variable domain, | 97.27 | |
| d1ucta2 | 96 | Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa | 97.27 | |
| d1nfde1 | 108 | Immunoglobulin light chain lambda variable domain, | 97.27 | |
| d1cd0a_ | 111 | Immunoglobulin light chain lambda variable domain, | 97.26 | |
| d2fnba_ | 95 | Fibronectin, different Fn3 modules {Human (Homo sa | 97.24 | |
| d1oaql_ | 110 | Immunoglobulin light chain lambda variable domain, | 97.23 | |
| d1q9ra1 | 113 | Immunoglobulin light chain kappa variable domain, | 97.22 | |
| d1dqta_ | 117 | Immunoreceptor CTLA-4 (CD152), N-terminal fragment | 97.22 | |
| d1cfba2 | 105 | Neuroglian, two amino proximal Fn3 repeats {Drosop | 97.22 | |
| d1l6za1 | 107 | Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-t | 97.21 | |
| d2atpb1 | 115 | CD8 {Mouse (Mus musculus), beta-chain [TaxId: 1009 | 97.21 | |
| d1va9a1 | 109 | Down syndrome cell adhesion molecule-like protein | 97.21 | |
| d1ucta2 | 96 | Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa | 97.21 | |
| d1bd2d1 | 111 | T-cell antigen receptor {Human (Homo sapiens), alp | 97.21 | |
| d1wisa1 | 111 | Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} | 97.21 | |
| d1ueya_ | 127 | KIAA0343 protein {Human (Homo sapiens) [TaxId: 960 | 97.21 | |
| d2ntsp1 | 113 | T-cell antigen receptor {Human (Homo sapiens), bet | 97.18 | |
| d1smoa_ | 113 | TREM-1 (triggering receptor expressed on myeloid c | 97.18 | |
| d1sq2n_ | 112 | Novel antigen receptor (against lysozyme) {Nurse s | 97.17 | |
| d1tvda_ | 116 | T-cell antigen receptor {Human (Homo sapiens), del | 97.16 | |
| d1u3ha1 | 110 | T-cell antigen receptor {Mouse (Mus musculus), alp | 97.15 | |
| d1h5ba_ | 113 | T-cell antigen receptor {Mouse (Mus musculus), alp | 97.15 | |
| d1v5ja_ | 108 | KIAA1355 {Human (Homo sapiens) [TaxId: 9606]} | 97.14 | |
| d2ak4d1 | 114 | T-cell antigen receptor {Human (Homo sapiens), alp | 97.13 | |
| d1ymmd1 | 96 | T-cell antigen receptor {Human (Homo sapiens), alp | 97.13 | |
| d1f3rb2 | 119 | Immunoglobulin light chain kappa variable domain, | 97.13 | |
| d2nxyb1 | 97 | CD4 V-set domains {Human (Homo sapiens) [TaxId: 96 | 97.12 | |
| d1fnfa3 | 89 | Fibronectin, different Fn3 modules {Human (Homo sa | 97.12 | |
| d1dr9a1 | 105 | CD80, N-terminal domain {Human (Homo sapiens) [Tax | 97.11 | |
| d1j8hd1 | 115 | T-cell antigen receptor {Human (Homo sapiens), alp | 97.1 | |
| d1vcaa1 | 109 | Vascular cell adhesion molecule-1 (VCAM-1) {Human | 97.09 | |
| d1i8lc_ | 118 | Immunoreceptor CTLA-4 (CD152), N-terminal fragment | 97.09 | |
| d1ncwl1 | 112 | Immunoglobulin light chain kappa variable domain, | 97.09 | |
| d1ac6a_ | 110 | T-cell antigen receptor {Mouse (Mus musculus), alp | 97.08 | |
| d1olla2 | 93 | Ligand binding domain of NK receptor NKp46 {Human | 97.07 | |
| d1vcaa1 | 109 | Vascular cell adhesion molecule-1 (VCAM-1) {Human | 97.07 | |
| d1fo0a_ | 115 | T-cell antigen receptor {Mouse (Mus musculus), alp | 97.06 | |
| d1tena_ | 90 | Tenascin {Human (Homo sapiens) [TaxId: 9606]} | 97.06 | |
| d1fnha1 | 90 | Fibronectin, different Fn3 modules {Human (Homo sa | 97.06 | |
| d1vesa_ | 113 | Novel antigen receptor 12Y-2 {Spotted wobbegong (O | 97.05 | |
| d1j8he1 | 113 | T-cell antigen receptor {Human (Homo sapiens), bet | 97.02 | |
| d1j05a_ | 111 | Immunoglobulin light chain kappa variable domain, | 97.02 | |
| d2ij0c1 | 118 | T-cell antigen receptor {Human (Homo sapiens), bet | 97.01 | |
| d1ogae1 | 114 | T-cell antigen receptor {Human (Homo sapiens), bet | 97.01 | |
| d1qr4a2 | 88 | Tenascin {Chicken (Gallus gallus) [TaxId: 9031]} | 97.0 | |
| d1fnfa2 | 91 | Fibronectin, different Fn3 modules {Human (Homo sa | 97.0 | |
| d1qr4a1 | 87 | Tenascin {Chicken (Gallus gallus) [TaxId: 9031]} | 97.0 | |
| d1tdqa3 | 86 | Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]} | 97.0 | |
| d1x5ja1 | 100 | Neogenin {Human (Homo sapiens) [TaxId: 9606]} | 97.0 | |
| d2gj6d1 | 94 | T-cell antigen receptor {Mouse (Mus musculus), bet | 97.0 | |
| d2cuia1 | 101 | Tenascin-X {Human (Homo sapiens) [TaxId: 9606]} | 96.99 | |
| d1mjul1 | 112 | Immunoglobulin light chain kappa variable domain, | 96.99 | |
| d1i9ea_ | 115 | T-cell antigen receptor {Mouse (Mus musculus), alp | 96.98 | |
| d1ujta_ | 120 | KIAA1568 protein {Human (Homo sapiens) [TaxId: 960 | 96.96 | |
| d2dtge2 | 196 | Insulin receptor {Human (Homo sapiens) [TaxId: 960 | 96.96 | |
| d1hxmb1 | 123 | T-cell antigen receptor {Human (Homo sapiens), del | 96.96 | |
| d1kgcd1 | 112 | T-cell antigen receptor {Human (Homo sapiens), alp | 96.95 | |
| d1olla2 | 93 | Ligand binding domain of NK receptor NKp46 {Human | 96.94 | |
| d2b5ic1 | 95 | Cytokine receptor common gamma chain {Human (Homo | 96.93 | |
| d1j8ka_ | 94 | Fibronectin, different Fn3 modules {Human (Homo sa | 96.93 | |
| d1n4xl_ | 113 | Immunoglobulin light chain kappa variable domain, | 96.92 | |
| d1u9ka_ | 110 | TREM-1 (triggering receptor expressed on myeloid c | 96.91 | |
| d1fnha3 | 89 | Fibronectin, different Fn3 modules {Human (Homo sa | 96.91 | |
| d1nkra2 | 99 | Killer cell inhibitory receptor {Human (Homo sapie | 96.91 | |
| d1ypzf1 | 120 | T-cell antigen receptor {Human (Homo sapiens), gam | 96.9 | |
| d1bqua1 | 95 | Cytokine receptor gp130 cytokine-binding domains { | 96.88 | |
| d1ugna2 | 98 | Ligand binding domain of lir-1 (ilt2) {Human (Homo | 96.88 | |
| d1hxma1 | 120 | T-cell antigen receptor {Human (Homo sapiens), gam | 96.87 | |
| d1fnha2 | 90 | Fibronectin, different Fn3 modules {Human (Homo sa | 96.86 | |
| d2dtge1 | 102 | Insulin receptor {Human (Homo sapiens) [TaxId: 960 | 96.86 | |
| d1h5ba_ | 113 | T-cell antigen receptor {Mouse (Mus musculus), alp | 96.85 | |
| d1kgce1 | 112 | T-cell antigen receptor {Human (Homo sapiens), bet | 96.84 | |
| d1smoa_ | 113 | TREM-1 (triggering receptor expressed on myeloid c | 96.83 | |
| d2bnub1 | 112 | T-cell antigen receptor {Human (Homo sapiens), bet | 96.83 | |
| d1owwa_ | 93 | Fibronectin, different Fn3 modules {Human (Homo sa | 96.83 | |
| d2aq2a1 | 110 | T-cell antigen receptor {Mouse (Mus musculus), bet | 96.81 | |
| d1cd0a_ | 111 | Immunoglobulin light chain lambda variable domain, | 96.79 | |
| d2esve1 | 111 | T-cell antigen receptor {Human (Homo sapiens), bet | 96.78 | |
| d1cd9b1 | 107 | Granulocyte colony-stimulating factor (GC-SF) rece | 96.77 | |
| d1n26a3 | 104 | Interleukin-6 receptor alpha chain, domains 2 and | 96.76 | |
| d1nfdb1 | 113 | T-cell antigen receptor {Mouse (Mus musculus), bet | 96.75 | |
| d1kgce1 | 112 | T-cell antigen receptor {Human (Homo sapiens), bet | 96.75 | |
| d1fnaa_ | 91 | Fibronectin, different Fn3 modules {Human (Homo sa | 96.74 | |
| d2cuma1 | 93 | Tenascin-X {Human (Homo sapiens) [TaxId: 9606]} | 96.73 | |
| d1nkra2 | 99 | Killer cell inhibitory receptor {Human (Homo sapie | 96.71 | |
| d1tdqa2 | 92 | Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]} | 96.71 | |
| d1f6fb2 | 103 | Prolactin receptor {Rat (Rattus norvegicus) [TaxId | 96.71 | |
| d2atpb1 | 115 | CD8 {Mouse (Mus musculus), beta-chain [TaxId: 1009 | 96.7 | |
| d1fnfa1 | 94 | Fibronectin, different Fn3 modules {Human (Homo sa | 96.68 | |
| d1qfoa_ | 118 | N-terminal domain of sialoadhesin {Mouse (Mus musc | 96.65 | |
| d2d9qb2 | 105 | Granulocyte colony-stimulating factor (GC-SF) rece | 96.65 | |
| d1ncna_ | 110 | CD86 (b7-2), N-terminal domain {Human (Homo sapien | 96.65 | |
| d1dr9a2 | 95 | CD80, second domain {Human (Homo sapiens) [TaxId: | 96.63 | |
| d2esve1 | 111 | T-cell antigen receptor {Human (Homo sapiens), bet | 96.62 | |
| d1dqta_ | 117 | Immunoreceptor CTLA-4 (CD152), N-terminal fragment | 96.62 | |
| d1nkra1 | 96 | Killer cell inhibitory receptor {Human (Homo sapie | 96.61 | |
| d3d48r2 | 104 | Prolactin receptor {Human (Homo sapiens) [TaxId: 9 | 96.6 | |
| d2dtge3 | 125 | Insulin receptor {Human (Homo sapiens) [TaxId: 960 | 96.58 | |
| d1hxma1 | 120 | T-cell antigen receptor {Human (Homo sapiens), gam | 96.57 | |
| d3b5ha2 | 80 | Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960 | 96.57 | |
| d1tdqa1 | 93 | Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]} | 96.57 | |
| d2ntsp1 | 113 | T-cell antigen receptor {Human (Homo sapiens), bet | 96.56 | |
| d2cdeb1 | 112 | T-cell antigen receptor {Human (Homo sapiens), bet | 96.53 | |
| d1ugna1 | 96 | Ligand binding domain of lir-1 (ilt2) {Human (Homo | 96.53 | |
| d1j8he1 | 113 | T-cell antigen receptor {Human (Homo sapiens), bet | 96.42 | |
| d1ogae1 | 114 | T-cell antigen receptor {Human (Homo sapiens), bet | 96.41 | |
| d2agjh1 | 120 | Immunoglobulin heavy chain variable domain, VH {En | 96.4 | |
| d1ac6a_ | 110 | T-cell antigen receptor {Mouse (Mus musculus), alp | 96.4 | |
| d1iqdb1 | 117 | Immunoglobulin heavy chain variable domain, VH {Hu | 96.38 | |
| d1dr9a2 | 95 | CD80, second domain {Human (Homo sapiens) [TaxId: | 96.37 | |
| d1muja1 | 100 | Class II MHC alpha chain, C-terminal domain {Mouse | 96.32 | |
| d2bnub1 | 112 | T-cell antigen receptor {Human (Homo sapiens), bet | 96.3 | |
| d1f3dh1 | 115 | Immunoglobulin heavy chain variable domain, VH {Mo | 96.3 | |
| d1hxmb1 | 123 | T-cell antigen receptor {Human (Homo sapiens), del | 96.28 | |
| d1axib2 | 106 | Growth hormone receptor {Human (Homo sapiens) [Tax | 96.26 | |
| d1jbja2 | 100 | CD3 epsilon chain ectodomain fragment {Mouse (Mus | 96.26 | |
| d1ypzf1 | 120 | T-cell antigen receptor {Human (Homo sapiens), gam | 96.25 | |
| d2b5ib2 | 104 | Interleukin-2 receptor beta chain {Human (Homo sap | 96.23 | |
| d1i8lc_ | 118 | Immunoreceptor CTLA-4 (CD152), N-terminal fragment | 96.22 | |
| d1cd9b2 | 106 | Granulocyte colony-stimulating factor (GC-SF) rece | 96.18 | |
| d1iarb2 | 101 | Interleukin-4 receptor alpha chain {Human (Homo sa | 96.16 | |
| d1ai1h1 | 120 | Immunoglobulin heavy chain variable domain, VH {Mo | 96.14 | |
| d1xaua_ | 104 | B and T lymphocyte attenuator, Btla {Mouse (Mus mu | 96.13 | |
| d2g5ra1 | 121 | N-terminal domain of sialic acid binding Ig-like l | 96.12 | |
| d1nfdb1 | 113 | T-cell antigen receptor {Mouse (Mus musculus), bet | 96.11 | |
| d1fo0b_ | 112 | T-cell antigen receptor {Mouse (Mus musculus), bet | 96.11 | |
| d1qnzh_ | 119 | Immunoglobulin heavy chain variable domain, VH {Mo | 96.09 | |
| d2ck0h1 | 109 | Immunoglobulin heavy chain variable domain, VH {Mo | 96.01 | |
| d1ymmd1 | 96 | T-cell antigen receptor {Human (Homo sapiens), alp | 95.97 | |
| d1um5h1 | 117 | Immunoglobulin heavy chain variable domain, VH {Mo | 95.94 | |
| d1yjdc1 | 118 | CD28 {Human (Homo sapiens) [TaxId: 9606]} | 95.94 | |
| d1fnga1 | 101 | Class II MHC alpha chain, C-terminal domain {Mouse | 95.94 | |
| d1tjgh1 | 132 | Immunoglobulin heavy chain variable domain, VH {En | 95.93 | |
| d1erna2 | 105 | Erythropoietin (EPO) receptor {Human (Homo sapiens | 95.93 | |
| d1u9ka_ | 110 | TREM-1 (triggering receptor expressed on myeloid c | 95.92 | |
| d1r0ah1 | 123 | Immunoglobulin heavy chain variable domain, VH {Mo | 95.91 | |
| d1kxvc_ | 119 | Camelid IG heavy chain variable domain, VHh {Camel | 95.88 | |
| d1vgeh1 | 122 | Immunoglobulin heavy chain variable domain, VH {Hu | 95.82 | |
| d1indh1 | 114 | Immunoglobulin heavy chain variable domain, VH {Mo | 95.81 | |
| d1jpth1 | 117 | Immunoglobulin heavy chain variable domain, VH {En | 95.8 | |
| d1k5nb_ | 100 | beta2-microglobulin {Human (Homo sapiens) [TaxId: | 95.8 | |
| d1j05b_ | 121 | Immunoglobulin heavy chain variable domain, VH {Mo | 95.8 | |
| d1nkra1 | 96 | Killer cell inhibitory receptor {Human (Homo sapie | 95.78 | |
| d1mfah1 | 117 | Immunoglobulin heavy chain variable domain, VH {Mo | 95.75 | |
| d1lk2b_ | 99 | beta2-microglobulin {Mouse (Mus musculus) [TaxId: | 95.74 | |
| d1bqua2 | 115 | Cytokine receptor gp130 cytokine-binding domains { | 95.73 | |
| d1ncwh1 | 119 | Immunoglobulin heavy chain variable domain, VH {Mo | 95.72 | |
| d2fbjh1 | 118 | Immunoglobulin heavy chain variable domain, VH {Mo | 95.69 | |
| d1yjdc1 | 118 | CD28 {Human (Homo sapiens) [TaxId: 9606]} | 95.69 | |
| d1pg7x1 | 120 | Immunoglobulin heavy chain variable domain, VH {Mo | 95.68 | |
| d1ugna1 | 96 | Ligand binding domain of lir-1 (ilt2) {Human (Homo | 95.65 | |
| d2cdeb1 | 112 | T-cell antigen receptor {Human (Homo sapiens), bet | 95.65 | |
| d1nlbh1 | 118 | Immunoglobulin heavy chain variable domain, VH {Mo | 95.65 | |
| d1dn0b1 | 120 | Immunoglobulin heavy chain variable domain, VH {Hu | 95.64 | |
| d1hdmb1 | 98 | Class II MHC beta chain, C-terminal domain {Human | 95.64 | |
| d1rjca1 | 126 | Camelid IG heavy chain variable domain, VHh {Camel | 95.62 |
| >d1x5ya1 b.1.2.1 (A:8-105) Myosin binding protein C, fast-type {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Myosin binding protein C, fast-type species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.63 E-value=7.9e-16 Score=118.98 Aligned_cols=94 Identities=30% Similarity=0.466 Sum_probs=83.4
Q ss_pred CCCCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCC-CeEEeEEeecCCcEEEeCCCcCCCeEEEEEEEec
Q psy7039 13 EPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTG-NWEKAVVVPAGETSCTVPGLIEGETYQFQVRAVN 91 (516)
Q Consensus 13 ~p~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~-~~~~~~~~~~~~~~~~i~~l~~~~~y~~~~~a~n 91 (516)
+|++|.+|.+..+++++|.|+|.+|..+++.+|.+|.|+|+..++ .|..........++++|.+|.++..|.|+|+|.|
T Consensus 1 PP~~P~~~~v~~~~~~sv~l~W~pP~~~~~~~i~~Y~V~~~~~~~~~~~~~~~~~~~~~~~~v~~L~~~~~Y~frV~A~n 80 (98)
T d1x5ya1 1 PTSAPQHLTVEDVTDTTTTLKWRPPDRIGAGGIDGYLVEYCLEGSEEWVPANKEPVERCGFTVKDLPTGARILFRVVGVN 80 (98)
T ss_dssp CCCCCEEEEEEEECSSEEEEEEECCSCCCSSCCCEEEEEEEETTCCCCEESSSSCBSSSEEEEECCCTTCCEEEEEEEEE
T ss_pred CCCCCcCcEEEEccCCEEEEEEECCCcCCCCCceEEEEEEEecCcceeEEeeeecCceeEEEECCCcCCeEEEEEEEEEC
Confidence 689999999999999999999999987888899999999998776 8988776667889999999999999999999999
Q ss_pred CCCCCCCCCCCcceE
Q psy7039 92 AAGPGEASKPTAPIV 106 (516)
Q Consensus 92 ~~g~~~~s~~~~~~~ 106 (516)
..|.+.++.....++
T Consensus 81 ~~G~s~~s~~~~~vt 95 (98)
T d1x5ya1 81 IAGRSEPATLLQPVT 95 (98)
T ss_dssp TTEECCCCCCSSCBC
T ss_pred CCcCCCCcCCCCCEE
Confidence 999998776554444
|
| >d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Telokin species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.57 E-value=1.4e-14 Score=112.56 Aligned_cols=92 Identities=30% Similarity=0.438 Sum_probs=86.5
Q ss_pred ccccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeE
Q psy7039 361 SIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSA 440 (516)
Q Consensus 361 ~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~ 440 (516)
.+.+..+..|+.+.|.|.+.|.|.+.+.|++++..+..+.++.+....+.+.|.|.++.. .|+|.|+|.|.|..|..+.
T Consensus 6 ~p~~~~v~~G~~~~l~C~v~g~p~p~v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~~~~-~D~G~Y~C~a~N~~G~~~~ 84 (101)
T d2cqva1 6 FPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTILAARQ-EHCGCYTLLVENKLGSRQA 84 (101)
T ss_dssp CCCSEEEETTCCEEEEEEEESSSSCEEEEEESSSBCCCSSSEEEEECSSEEEEEETTCCT-TTCEEEEEEEECSSCEEEC
T ss_pred eCCcEEEeCCCcEEEEEEEEecCCCEEEEEeCceeeccCCcEEEEEecceeEEEEeeCCc-ccCEEEEEEEEECCCEEEE
Confidence 356788999999999999999999999999999999888899988888888999999999 9999999999999999999
Q ss_pred EEEEEEecCCCCC
Q psy7039 441 SCKVYVVDKPSPP 453 (516)
Q Consensus 441 s~~l~v~~~p~~P 453 (516)
++.|.|..+|++|
T Consensus 85 ~~~l~V~~~P~pP 97 (101)
T d2cqva1 85 QVNLTVVDKPDPP 97 (101)
T ss_dssp CEEEEEECSCSCC
T ss_pred EEEEEEEecCCCc
Confidence 9999999999988
|
| >d2vkwa2 b.1.2.1 (A:601-693) Neural cell adhesion molecule 1, NCAM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Neural cell adhesion molecule 1, NCAM species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.46 E-value=8.1e-14 Score=106.38 Aligned_cols=85 Identities=25% Similarity=0.430 Sum_probs=77.4
Q ss_pred CCCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCCCeEEeEEeecCCcEEEeCCCcCCCeEEEEEEEecCC
Q psy7039 14 PGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVVVPAGETSCTVPGLIEGETYQFQVRAVNAA 93 (516)
Q Consensus 14 p~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~~~a~n~~ 93 (516)
|+||.++.+...++++|.|+|.+|. +++++|.+|.|+|+..++.|..........++++|.+|.++..|.|+|+|.|..
T Consensus 1 P~~P~~~~~~~~~~~sv~l~W~~p~-~~~~~I~~Y~i~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~N~~ 79 (93)
T d2vkwa2 1 PSAPKLEGQMGEDGNSIKVNLIKQD-DGGSPIRHYLVRYRALSSEWKPEIRLPSGSDHVMLKSLDWNAEYEVYVVAENQQ 79 (93)
T ss_dssp CCCCEEEEEECTTSSCEEEEEECCC-CTTSCCCEEEEEEEETTSCCCCCEEECTTCCEEEECSCCTTCEEEEEEEEEETT
T ss_pred CCCCccCEeEEcCCCEEEEEeeCCC-CCcCceEEEEEEeeecCcceeeeeeccCCceEEEEeccccceEEEEEEEEEcCC
Confidence 8899999999999999999999984 888999999999999888776666777889999999999999999999999999
Q ss_pred CCCCCC
Q psy7039 94 GPGEAS 99 (516)
Q Consensus 94 g~~~~s 99 (516)
|.+.++
T Consensus 80 G~s~ps 85 (93)
T d2vkwa2 80 GKSKAA 85 (93)
T ss_dssp EECCCE
T ss_pred CCcCCE
Confidence 988864
|
| >d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Twitchin species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.46 E-value=8.9e-14 Score=107.05 Aligned_cols=90 Identities=16% Similarity=0.186 Sum_probs=81.3
Q ss_pred ccccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeE
Q psy7039 361 SIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSA 440 (516)
Q Consensus 361 ~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~ 440 (516)
.+.+..+.+|+.+.|.|.+.|.|.+.+.|++++..+..+.++.+....+...|.|.++.. .|.|.|+|.|.|..|..+.
T Consensus 7 ~p~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~~~~l~~~~~~~~~~~~~~~~L~I~~~~~-~D~G~Y~C~a~N~~G~~~~ 85 (97)
T d1koaa1 7 KPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKG-DDKGEYTVRAKNSYGTKEE 85 (97)
T ss_dssp CCCCCEEETTSCEEEEEEEECSSCCEEEEEETTEECCSBTTBBCCCSTTEEEEEESCCCS-GGGSCEEEEEEETTEEEEE
T ss_pred eCCCEEEeCCCcEEEEEEEEEcCCCEEEEEEeeeccceeeEEEEEecCCeeEEEeCCCce-ecCEEEEEEEEECCCEEEE
Confidence 356678999999999999999999999999999999888888887778888999999999 9999999999999999999
Q ss_pred EEEEEEecCCC
Q psy7039 441 SCKVYVVDKPS 451 (516)
Q Consensus 441 s~~l~v~~~p~ 451 (516)
++.|.|...+.
T Consensus 86 ~~~l~V~~~~~ 96 (97)
T d1koaa1 86 IVFLNVTRHSE 96 (97)
T ss_dssp EECCEEECSCC
T ss_pred EEEEEEeecCC
Confidence 99999986544
|
| >d1x4za1 b.1.2.1 (A:8-115) Brother of CDO precursor (BOC) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Brother of CDO precursor (BOC) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.46 E-value=4.6e-13 Score=105.11 Aligned_cols=96 Identities=32% Similarity=0.614 Sum_probs=80.2
Q ss_pred CCCCCCCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCC--CeEEeE-EeecCCcEEEeCCCcCCCeEEEE
Q psy7039 10 PFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTG--NWEKAV-VVPAGETSCTVPGLIEGETYQFQ 86 (516)
Q Consensus 10 ~~~~p~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~--~~~~~~-~~~~~~~~~~i~~l~~~~~y~~~ 86 (516)
-..+|++|.++.+..+++++|.|+|.+| .+++.+|.+|.|+|+..+. .|.... ......+++.|.+|.+++.|.|+
T Consensus 7 ~~~pP~~P~~~~v~~~~~~sv~l~W~p~-~~~g~~I~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~L~p~t~Y~fr 85 (108)
T d1x4za1 7 RLSPPEAPDRPTISTASETSVYVTWIPR-GNGGFPIQSFRVEYKKLKKVGDWILATSAIPPSRLSVEITGLEKGISYKFR 85 (108)
T ss_dssp SCCCCCCCCCCEEEECCSSEEEEECCCC-CCTTSCCCEEEEEEEESSSCCCCEEEEEEECTTCCEEEEESCCTTCEEEEE
T ss_pred ccCCCccCCCCEEEEccCCEEEEEEECC-CCCCCccEEEEEEEEecCCCCceEEEEEeecCCccEEEECCCCCCCEEEEE
Confidence 3567999999999999999999999876 5788899999999997544 565544 34567889999999999999999
Q ss_pred EEEecCCCCCCCCCCCcceE
Q psy7039 87 VRAVNAAGPGEASKPTAPIV 106 (516)
Q Consensus 87 ~~a~n~~g~~~~s~~~~~~~ 106 (516)
|+|.|..|.+.+|.++..+.
T Consensus 86 V~A~N~~G~s~~S~pS~p~~ 105 (108)
T d1x4za1 86 VRALNMLGESEPSAPSRPYV 105 (108)
T ss_dssp EEEEETTEECCCCCCCCCEE
T ss_pred EEEECCCcCCCCCCCCCCEE
Confidence 99999999998887665444
|
| >d1bpva_ b.1.2.1 (A:) Type I titin module {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Type I titin module species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.45 E-value=8.3e-14 Score=108.85 Aligned_cols=94 Identities=35% Similarity=0.535 Sum_probs=78.8
Q ss_pred CCCCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCC-CeEEeEEeecCCcEEEeCCCcCCCeEEEEEEEec
Q psy7039 13 EPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTG-NWEKAVVVPAGETSCTVPGLIEGETYQFQVRAVN 91 (516)
Q Consensus 13 ~p~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~-~~~~~~~~~~~~~~~~i~~l~~~~~y~~~~~a~n 91 (516)
+|+||.++.+..+++++|.|+|.+|..+++.+|..|.++++..+. .|............++|.+|++++.|.|+|+|.|
T Consensus 2 Pp~pP~~p~~~~~t~~sv~lsW~~P~~~~g~~i~~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~frV~A~n 81 (104)
T d1bpva_ 2 PIDPPGKPVPLNITRHTVTLKWAKPEYTGGFKITSYIVEKRDLPNGRWLKANFSNILENEFTVSGLTEDAAYEFRVIAKN 81 (104)
T ss_dssp CCCCCCCCEEEEEETTEEEEECCCCSCCTTCCCSCCEEEEEETTSCCCEECCCSCCCSSEEEECSCCSSCCEEEEEEEEC
T ss_pred CCCCCCCCEEEEecCCEEEEEEEeccccCcceEEEEEEEeecccccceeEEEeeccceeEEEEcCCCCCCEEEEEEEEEE
Confidence 678888889999999999999999988888899999999998666 6776666666789999999999999999999999
Q ss_pred CCCC-CCCCCCCcceE
Q psy7039 92 AAGP-GEASKPTAPIV 106 (516)
Q Consensus 92 ~~g~-~~~s~~~~~~~ 106 (516)
..|. +.++..+..++
T Consensus 82 ~~G~~s~~S~~s~~vt 97 (104)
T d1bpva_ 82 AAGAISPPSEPSDAIT 97 (104)
T ss_dssp TTSCEEEEEEEEEEEC
T ss_pred CCCCCCCCcCCCCCEE
Confidence 9986 55544443333
|
| >d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Twitchin species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.44 E-value=2.2e-13 Score=103.92 Aligned_cols=90 Identities=27% Similarity=0.432 Sum_probs=81.2
Q ss_pred CCccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEeec
Q psy7039 113 APRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTT 192 (516)
Q Consensus 113 ~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~ 192 (516)
+|.|. .++.++.+.+|+++.|.|.+. |.|.+.+.|++++..+....++.+...
T Consensus 2 ~P~i~-~~~~~~~v~~G~~~~l~c~~~--------------------------g~P~p~v~W~~~~~~i~~~~~~~~~~~ 54 (93)
T d1wiua_ 2 KPKIL-TASRKIKIKAGFTHNLEVDFI--------------------------GAPDPTATWTVGDSGAALAPELLVDAK 54 (93)
T ss_dssp CCEEC-CCCCEEEECSSBCCEEEEEEE--------------------------CCSSCEEEEECSSSSCBCSTTSEEEEE
T ss_pred CCeEE-eCCCcEEEeCCCeEEEEEEEE--------------------------EecCCeEEEEeeeeeceeeeeeeeccc
Confidence 56776 677889999999999999999 999999999999999988888888888
Q ss_pred CCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEEee
Q psy7039 193 KSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVT 229 (516)
Q Consensus 193 ~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~~ 229 (516)
+...+|.|.+++.+|+|.|+|.+.|..|.......+.
T Consensus 55 ~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~~~l~ 91 (93)
T d1wiua_ 55 SSTTSIFFPSAKRADSGNYKLKVKNELGEDEAIFEVI 91 (93)
T ss_dssp TTEEEEECTTBCGGGCEEEEEEEEETTEEEEEEEEEE
T ss_pred ccceeeccccccccccEEEEEEEEECCCEEEEEEEEE
Confidence 8889999999999999999999999999887765543
|
| >d1cfba1 b.1.2.1 (A:610-709) Neuroglian, two amino proximal Fn3 repeats {Drosophila melanogaster [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Neuroglian, two amino proximal Fn3 repeats species: Drosophila melanogaster [TaxId: 7227]
Probab=99.44 E-value=4.5e-13 Score=103.69 Aligned_cols=94 Identities=23% Similarity=0.360 Sum_probs=77.8
Q ss_pred CCCCCCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCC--CeEEeEEeecCCcEEEeCCCcCCCeEEEEEE
Q psy7039 11 FDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTG--NWEKAVVVPAGETSCTVPGLIEGETYQFQVR 88 (516)
Q Consensus 11 ~~~p~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~--~~~~~~~~~~~~~~~~i~~l~~~~~y~~~~~ 88 (516)
.++|+||.++.+. ..++++.|+|.+|. +++++|.+|.|+|+.... .+..........+++.+.+|.++..|.|+++
T Consensus 3 ~dvP~~P~~~~v~-~~~~sv~lsW~pp~-~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~t~Y~frV~ 80 (100)
T d1cfba1 3 QDVPNAPKLTGIT-CQADKAEIHWEQQG-DNRSPILHYTIQFNTSFTPASWDAAYEKVPNTDSSFVVQMSPWANYTFRVI 80 (100)
T ss_dssp CCCCCCCEEEEEE-ECSSEEEEEEECCC-CTTSCCCEEEEEEEESSSTTCCEEEEEEEETTCSEEEEECCSSEEEEEEEE
T ss_pred ccCCCcCcCcEEE-EcCCEEEEEEcCCc-ccccceEEEEEEEecCCCCceeeEEeeecCCceEEEEecCCCCCEEEEEEE
Confidence 4789999999986 67789999999884 677889999999998655 3444455555678899999999999999999
Q ss_pred EecCCCCCCCCCCCcceE
Q psy7039 89 AVNAAGPGEASKPTAPIV 106 (516)
Q Consensus 89 a~n~~g~~~~s~~~~~~~ 106 (516)
|.|..|.+.++..+..++
T Consensus 81 A~n~~G~g~~S~~s~~vt 98 (100)
T d1cfba1 81 AFNKIGASPPSAHSDSCT 98 (100)
T ss_dssp EEETTEECCCCCCCCCEE
T ss_pred EEeCCcCCCCcCCCcCEE
Confidence 999999999887665554
|
| >d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Telokin species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.42 E-value=7.9e-13 Score=102.41 Aligned_cols=90 Identities=24% Similarity=0.314 Sum_probs=79.2
Q ss_pred CccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEeecC
Q psy7039 114 PRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTTK 193 (516)
Q Consensus 114 p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~ 193 (516)
|.|. ..+..+.+.+|+.+.|.|.+. |.|.+.+.|++++..+....++.+...+
T Consensus 1 P~~~-~~p~~~~v~~G~~~~l~C~v~--------------------------g~p~p~v~W~k~~~~l~~~~~~~~~~~~ 53 (101)
T d2cqva1 1 PQII-QFPEDQKVRAGESVELFGKVT--------------------------GTQPITCTWMKFRKQIQESEHMKVENSE 53 (101)
T ss_dssp CEES-CCCCSEEEETTCCEEEEEEEE--------------------------SSSSCEEEEEESSSBCCCSSSEEEEECS
T ss_pred CeEE-eeCCcEEEeCCCcEEEEEEEE--------------------------ecCCCEEEEEeCceeeccCCcEEEEEec
Confidence 3444 556778999999999999999 9999999999999999988999988888
Q ss_pred CeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEEeec
Q psy7039 194 SETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVTG 230 (516)
Q Consensus 194 ~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~~~ 230 (516)
..++|.|.+++.+|+|.|+|.+.|..|.......+.+
T Consensus 54 ~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 90 (101)
T d2cqva1 54 NGSKLTILAARQEHCGCYTLLVENKLGSRQAQVNLTV 90 (101)
T ss_dssp SEEEEEETTCCTTTCEEEEEEEECSSCEEECCEEEEE
T ss_pred ceeEEEEeeCCcccCEEEEEEEEECCCEEEEEEEEEE
Confidence 8889999999999999999999999998776665544
|
| >d1x3da1 b.1.2.1 (A:8-112) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.42 E-value=4.1e-13 Score=104.97 Aligned_cols=96 Identities=24% Similarity=0.360 Sum_probs=81.2
Q ss_pred eccCCCCCCCCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCCCeEEeEEeecCCcEEEeCCCcCCCeEEE
Q psy7039 6 LIKNPFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVVVPAGETSCTVPGLIEGETYQF 85 (516)
Q Consensus 6 ~~~~~~~~p~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~ 85 (516)
+++++.++|++|.++++..+++++|.|+|.+|. +++.+|.+|.|+++.....+..........+.+.+.+|.++..|.|
T Consensus 3 vf~T~~~~P~~P~~~~~~~~~~~sv~l~W~pp~-~~~~~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~t~Y~f 81 (105)
T d1x3da1 3 IFTTLSCEPDIPNPPRIANRTKNSLTLQWKAPS-DNGSKIQNFVLEWDEGKGNGEFCQCYMGSQKQFKITKLSPAMGCKF 81 (105)
T ss_dssp CCCCCCSCCCCCCCCEEEEEETTEEEEECCCCC-CCSSCEEEEEEEECTTTSSSCCEEEEEESCSEEEEESCCTTCEEEE
T ss_pred eEECCCCCCcCCCCCEEEEccCCEEEEEEECCC-CCcCccEEEEEEEecCCCcceeEEEecCCccEEEecCCcCCcEEEE
Confidence 467889999999999999999999999999985 6778899999999876553333334445788999999999999999
Q ss_pred EEEEecCCCCCCCCCCC
Q psy7039 86 QVRAVNAAGPGEASKPT 102 (516)
Q Consensus 86 ~~~a~n~~g~~~~s~~~ 102 (516)
+|+|.|..|.+.++...
T Consensus 82 rV~A~N~~G~s~~S~~~ 98 (105)
T d1x3da1 82 RLSARNDYGTSGFSEEV 98 (105)
T ss_dssp ECCEEESSCBCCCCCCE
T ss_pred EEEEECCCeEcCCCCcE
Confidence 99999999998876543
|
| >d1uema_ b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: KIAA1568 protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.42 E-value=5.4e-13 Score=106.48 Aligned_cols=97 Identities=31% Similarity=0.544 Sum_probs=80.6
Q ss_pred CCCCCCCCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCC--CeEEeEEeecCCcEEEeCCCcCCCeEEEE
Q psy7039 9 NPFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTG--NWEKAVVVPAGETSCTVPGLIEGETYQFQ 86 (516)
Q Consensus 9 ~~~~~p~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~--~~~~~~~~~~~~~~~~i~~l~~~~~y~~~ 86 (516)
+..++|+||.+|.+..+++++|.|+|.+| .+++.+|.+|.|+++..+. .|..... ....+.++|.+|++++.|.|+
T Consensus 11 ~~~~~P~pP~~~~v~~~~~~sv~l~W~p~-~~~~~~i~~Y~v~~~~~~~~~~~~~~~~-~~~~~~~~v~~L~p~t~Y~fr 88 (117)
T d1uema_ 11 DLSDLPGPPSKPQVTDVTKNSVTLSWQPG-TPGTLPASAYIIEAFSQSVSNSWQTVAN-HVKTTLYTVRGLRPNTIYLFM 88 (117)
T ss_dssp CSCCSCBCCCCCEEEEECSSCEEEECCCC-BCSSSCCCEEEEEEEETTTEEEEEEEEE-EECSSEEEECSCCTTCEEEEE
T ss_pred eeCccCcCCCCCEEEEccCCEEEEEEECC-CcCCCCeEEEEEEEeccCCceeeEEecc-ccccccceECCCCCCCEEEEE
Confidence 44688999999999999999999999987 4777889999999887655 5655433 346789999999999999999
Q ss_pred EEEecCCCCCCCCCCCcceEe
Q psy7039 87 VRAVNAAGPGEASKPTAPIVA 107 (516)
Q Consensus 87 ~~a~n~~g~~~~s~~~~~~~~ 107 (516)
|+|.|..|.+.++.....+..
T Consensus 89 V~A~N~~G~s~~S~~s~~v~t 109 (117)
T d1uema_ 89 VRAINPQGLSDPSPMSDPVRT 109 (117)
T ss_dssp EEEEETTEEEEECCCCCCEEC
T ss_pred EEEEeCCcCCCCcCCCcCEEe
Confidence 999999999888776655543
|
| >d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Twitchin species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.41 E-value=4.1e-13 Score=102.35 Aligned_cols=86 Identities=31% Similarity=0.492 Sum_probs=79.3
Q ss_pred ccccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeE
Q psy7039 361 SIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSA 440 (516)
Q Consensus 361 ~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~ 440 (516)
.+.++.+..|+++.|.|.+.|.|.|.+.|++++..+..+.++..........|.|.++.. .|+|.|+|.|.|..|..+.
T Consensus 8 ~~~~~~v~~G~~~~l~c~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~I~~~~~-~D~G~Y~c~a~N~~G~~~~ 86 (93)
T d1wiua_ 8 ASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIFFPSAKR-ADSGNYKLKVKNELGEDEA 86 (93)
T ss_dssp CCCEEEECSSBCCEEEEEEECCSSCEEEEECSSSSCBCSTTSEEEEETTEEEEECTTBCG-GGCEEEEEEEEETTEEEEE
T ss_pred CCCcEEEeCCCeEEEEEEEEEecCCeEEEEeeeeeceeeeeeeecccccceeeccccccc-cccEEEEEEEEECCCEEEE
Confidence 456788999999999999999999999999999999888888888888888999999999 9999999999999999999
Q ss_pred EEEEEEe
Q psy7039 441 SCKVYVV 447 (516)
Q Consensus 441 s~~l~v~ 447 (516)
++.|.|+
T Consensus 87 ~~~l~V~ 93 (93)
T d1wiua_ 87 IFEVIVQ 93 (93)
T ss_dssp EEEEEEC
T ss_pred EEEEEEC
Confidence 8888873
|
| >d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Twitchin species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.41 E-value=3.2e-13 Score=103.85 Aligned_cols=88 Identities=17% Similarity=0.215 Sum_probs=77.5
Q ss_pred CccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEeecC
Q psy7039 114 PRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTTK 193 (516)
Q Consensus 114 p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~ 193 (516)
|.|. ..+.++.+.+|+.+.|.|.+. |.|.+.+.|++++..+....++.+...+
T Consensus 2 P~f~-~~p~~~~v~~G~~~~l~C~~~--------------------------g~P~p~v~W~~~~~~l~~~~~~~~~~~~ 54 (97)
T d1koaa1 2 PRFI-VKPYGTEVGEGQSANFYCRVI--------------------------ASSPPVVTWHKDDRELKQSVKYMKRYNG 54 (97)
T ss_dssp CEEE-ECCCCCEEETTSCEEEEEEEE--------------------------CSSCCEEEEEETTEECCSBTTBBCCCST
T ss_pred CEEE-EeCCCEEEeCCCcEEEEEEEE--------------------------EcCCCEEEEEEeeeccceeeEEEEEecC
Confidence 4555 566778899999999999999 9999999999999999988888887788
Q ss_pred CeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEEe
Q psy7039 194 SETVLDIPFCSRSDTGHYSLTLENNLGTATASAHV 228 (516)
Q Consensus 194 ~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~ 228 (516)
....|.|.+++.+|+|.|+|.+.|..|.......+
T Consensus 55 ~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l 89 (97)
T d1koaa1 55 NDYGLTINRVKGDDKGEYTVRAKNSYGTKEEIVFL 89 (97)
T ss_dssp TEEEEEESCCCSGGGSCEEEEEEETTEEEEEEECC
T ss_pred CeeEEEeCCCceecCEEEEEEEEECCCEEEEEEEE
Confidence 88899999999999999999999999987665543
|
| >d1wfna1 b.1.2.1 (A:8-113) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Sidekick 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.41 E-value=1.9e-13 Score=107.16 Aligned_cols=96 Identities=23% Similarity=0.373 Sum_probs=80.6
Q ss_pred ceeccCCCCCCCCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCC-CeEEeEEeecCCcEEEeCCCcCCCe
Q psy7039 4 SVLIKNPFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTG-NWEKAVVVPAGETSCTVPGLIEGET 82 (516)
Q Consensus 4 ~~~~~~~~~~p~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~-~~~~~~~~~~~~~~~~i~~l~~~~~ 82 (516)
++++++.++.|++|.+|++..+++++|.|+|.+|...+ +.|.+|.|+|+..+. .+...........+++|.+|.++..
T Consensus 1 Pv~v~T~e~vP~~p~~l~~~~~~~~sv~l~W~~P~~~n-g~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~ 79 (106)
T d1wfna1 1 PQLVRTHEDVPGPVGHLSFSEILDTSLKVSWQEPGEKN-GILTGYRISWEEYNRTNTRVTHYLPNVTLEYRVTGLTALTT 79 (106)
T ss_dssp CCSCCSSCCSCCCCSCCEEESCCSSEEEEECCCCTTCC-SCCCEEEEEEEESSCGGGCCCEEECSSCCEEEEESCCTTCE
T ss_pred CEEEEcCCCCCcCCCCcEEEEecCCEEEEEEECCCCCC-CcEEeEEEEEEECCCCcceEEEecCCCeeEEEEccCCCCCE
Confidence 46889999999999999999999999999999986544 579999999988665 3333334556678999999999999
Q ss_pred EEEEEEEecCCCCCCCCC
Q psy7039 83 YQFQVRAVNAAGPGEASK 100 (516)
Q Consensus 83 y~~~~~a~n~~g~~~~s~ 100 (516)
|.|+|+|.|..|.+.++.
T Consensus 80 Y~~~V~A~n~~G~g~~s~ 97 (106)
T d1wfna1 80 YTIEVAAMTSKGQGQVSA 97 (106)
T ss_dssp EEEEEEEECSSCEEEEEE
T ss_pred EEEEEEEECCCCCcCCcC
Confidence 999999999999877553
|
| >d1wfoa1 b.1.2.1 (A:8-124) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Sidekick 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.40 E-value=4.7e-13 Score=106.89 Aligned_cols=97 Identities=26% Similarity=0.392 Sum_probs=81.6
Q ss_pred CcceeccCCCCCCCCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCC--CeEEeEEeecCCcEEEeCCCcC
Q psy7039 2 DHSVLIKNPFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTG--NWEKAVVVPAGETSCTVPGLIE 79 (516)
Q Consensus 2 ~~~~~~~~~~~~p~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~--~~~~~~~~~~~~~~~~i~~l~~ 79 (516)
+..+.+++..+.|++|.++.+..+++++|.|+|.+|..++ +.|.+|.|+|+..+. .+...........+++|.+|++
T Consensus 9 s~~v~~~T~~~~P~~P~~~~~~~~~~~sv~v~W~~P~~~~-g~i~~Y~i~y~~~~~~~~~~~~~~~~~~~~~~~i~~L~p 87 (117)
T d1wfoa1 9 HPPILERTLDDVPGPPMGILFPEVRTTSVRLIWQPPAAPN-GIILAYQITHRLNTTTANTATVEVLAPSARQYTATGLKP 87 (117)
T ss_dssp CCCSCCCCSCCCCCCCCCCEEEEECSSEEEEECCCCSCCC-SCCCEEEEEEEESSCCCSCCCEEEECTTCCEEEEESCCS
T ss_pred CCCEEEECCCCCCcCCCCcEEEEecCCEEEEEEECCCCCC-CceEEEeeeeeeccCCCceEeEEecCCceEEEEECCCCC
Confidence 3568899999999999999999999999999999986554 579999999987655 3433444556788999999999
Q ss_pred CCeEEEEEEEecCCCCCCCC
Q psy7039 80 GETYQFQVRAVNAAGPGEAS 99 (516)
Q Consensus 80 ~~~y~~~~~a~n~~g~~~~s 99 (516)
+..|.|+++|.|..|.+.++
T Consensus 88 ~t~Y~~~V~A~n~~G~g~~S 107 (117)
T d1wfoa1 88 ESVYLFRITAQTRKGWGEAA 107 (117)
T ss_dssp SSEEEEEEEEECSSCEEEEE
T ss_pred CCEEEEEEEEECCCcCCCCc
Confidence 99999999999999987654
|
| >d1wf5a1 b.1.2.1 (A:8-115) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Sidekick 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.40 E-value=5.4e-13 Score=104.75 Aligned_cols=102 Identities=31% Similarity=0.602 Sum_probs=77.1
Q ss_pred cceeccCCCCCCCCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCCCeEEeE-EeecCCcEEEeCCCcCCC
Q psy7039 3 HSVLIKNPFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAV-VVPAGETSCTVPGLIEGE 81 (516)
Q Consensus 3 ~~~~~~~~~~~p~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~~~~~~~-~~~~~~~~~~i~~l~~~~ 81 (516)
..+.+++..++|+.|. +.+..+++++|.|+|.+|. +++++|.+|.|+|+..++.|.... ......++++|.+|.+++
T Consensus 3 ~~l~v~~~P~~P~~p~-~~~~~~~~~sv~l~W~~P~-~~~~~I~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t 80 (108)
T d1wf5a1 3 AHLRVRQLPHAPEHPV-ATLSTVERRAINLTWTKPF-DGNSPLIRYILEMSENNAPWTVLLASVDPKATSVTVKGLVPAR 80 (108)
T ss_dssp CCSSCCCCCCCCSSCE-EEECSSSTTEEEEECCCCC-CCSSCEEEEEEEEECTTCCCEEEESSCCTTCCEEEEESCCTTC
T ss_pred cccEEecCCCCCCCCE-EEEEeccCCEEEEEEECCC-CCCCccEEEEEEEEeccCCceEEeeeecCCccEEEECCCCCCC
Confidence 3445555544444443 3344577889999999984 788899999999998777665443 344567899999999999
Q ss_pred eEEEEEEEecCCCCCCCCCCCcceE
Q psy7039 82 TYQFQVRAVNAAGPGEASKPTAPIV 106 (516)
Q Consensus 82 ~y~~~~~a~n~~g~~~~s~~~~~~~ 106 (516)
.|.|+++|.|..|.+.++.....++
T Consensus 81 ~Y~frV~A~N~~G~s~~S~~~~~~t 105 (108)
T d1wf5a1 81 SYQFRLCAVNDVGKGQFSKDTERVS 105 (108)
T ss_dssp EEEEEEEEEESSCEEEECCCCSCEE
T ss_pred EEEEEEEEEcCCcCCCCcCCcCCEE
Confidence 9999999999999988776554443
|
| >d2crma1 b.1.2.1 (A:8-114) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.40 E-value=1.1e-12 Score=102.83 Aligned_cols=96 Identities=25% Similarity=0.478 Sum_probs=79.0
Q ss_pred eeccCCCCCCCCCcceEE-EeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCC--CeEEeEEeecCCcEEEeCCCcCCC
Q psy7039 5 VLIKNPFDEPGKPTDLEA-TDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTG--NWEKAVVVPAGETSCTVPGLIEGE 81 (516)
Q Consensus 5 ~~~~~~~~~p~~p~~l~~-~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~--~~~~~~~~~~~~~~~~i~~l~~~~ 81 (516)
|.+++..+.|++|.++.+ ..+++++|.|+|.+|..+++.++..|.++++..+. .|... .....+.+.|.+|++++
T Consensus 2 v~~~T~~~~P~~P~~~~~~~~~~~~sv~l~W~~P~~~~g~~~~~y~v~~~~~~~~~~~~~~--~~~~~~~~~i~~L~p~t 79 (107)
T d2crma1 2 VEFTTCPDKPGIPVKPSVKGKIHSHSFKITWDPPKDNGGATINKYVVEMAEGSNGNKWEMI--YSGATREHLCDRLNPGC 79 (107)
T ss_dssp CSCCSCCCCCCCCCCCEEEEEEETTEEEEECCCCTTCCSSCCCEEEEEEEESSSSCCCEEE--ECSSCSEEEECSCCTTS
T ss_pred EEEECCCCCCcCCCCCEEEeeecCCEEEEEEEECccCCcceEEEEEEEEEeecCCCcEEEe--ecCCccEEEEeccCCCC
Confidence 456788899999988654 45789999999999987888889999999987655 44433 33478899999999999
Q ss_pred eEEEEEEEecCCCCCCCCCCC
Q psy7039 82 TYQFQVRAVNAAGPGEASKPT 102 (516)
Q Consensus 82 ~y~~~~~a~n~~g~~~~s~~~ 102 (516)
.|.|+|+|.|..|.+.++...
T Consensus 80 ~Y~~rV~A~n~~G~s~~S~~v 100 (107)
T d2crma1 80 FYRLRVYCISDGGQSAVSESL 100 (107)
T ss_dssp CEEEEEEEEETTEECCCCCCC
T ss_pred EEEEEEEEECCCcCcCCCCcE
Confidence 999999999999998876543
|
| >d1wisa1 b.1.2.1 (A:8-118) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Sidekick 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.40 E-value=4.2e-13 Score=106.11 Aligned_cols=101 Identities=29% Similarity=0.436 Sum_probs=82.7
Q ss_pred eeccCCCCCCCCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCC----CeEEeE--EeecCCcEEEeCCCc
Q psy7039 5 VLIKNPFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTG----NWEKAV--VVPAGETSCTVPGLI 78 (516)
Q Consensus 5 ~~~~~~~~~p~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~----~~~~~~--~~~~~~~~~~i~~l~ 78 (516)
|....|.++|++|.+|++..+++++|.|+|.+|. +++++|..|.|+++.... .|.... ......+++.|.+|+
T Consensus 2 i~~~~p~~~P~~P~~~~~~~~~~~sv~l~W~pp~-~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~L~ 80 (111)
T d1wisa1 2 ISSGVPPELPGPPTNLGISNIGPRSVTLQFRPGY-DGKTSISRWLVEAQVGVVGEGEEWLLIHQLSNEPDARSMEVPDLN 80 (111)
T ss_dssp CCSCCCCCCCCCCEEEEEESCCSSCEEEEEECCC-CCSSCCSEEEEEECBSCCSTTSCCEEEEEEESCTTCSEEEECSCC
T ss_pred cccCCCCCCCcCCCCCEEEEcCCCEEEEEEeCCC-CCCCceeEEEEeeeecccCCCcceeeeeeeecccceeEEEeCCCC
Confidence 4556789999999999999999999999999874 778899999999986433 333332 234567889999999
Q ss_pred CCCeEEEEEEEecCCCCCCCCCCCcceE
Q psy7039 79 EGETYQFQVRAVNAAGPGEASKPTAPIV 106 (516)
Q Consensus 79 ~~~~y~~~~~a~n~~g~~~~s~~~~~~~ 106 (516)
++..|.|+|+|.|..|.+.++..+..+.
T Consensus 81 p~t~Y~frV~A~N~~G~s~~S~~s~~~~ 108 (111)
T d1wisa1 81 PFTCYSFRMRQVNIVGTSPPSQPSRKIQ 108 (111)
T ss_dssp TTSEECCCCEEECSSCBCCCCCCCCCEE
T ss_pred CCCEEEEEEEEEcCCcCCCCcCCCCCEE
Confidence 9999999999999999999887665443
|
| >d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Telokin species: Turkey (Meleagris gallopavo) [TaxId: 9103]
Probab=99.40 E-value=2.2e-12 Score=100.11 Aligned_cols=87 Identities=21% Similarity=0.394 Sum_probs=78.0
Q ss_pred ccccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEEEEcC-CeEEEEEcCceecCCceEEEEEEEcCCCcee
Q psy7039 361 SIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSE-NQTIYRNKSAKRATDSGSYTIQLVNTVGSDS 439 (516)
Q Consensus 361 ~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~-~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s 439 (516)
.+.++.+..|+.+.|.|.+.|.|.|.+.|++++..+..+.++.+.... +...|.|.++.. .|.|.|+|.|.|..|...
T Consensus 14 ~~~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~~~~i~~~~~~~~~~~~~~~~~L~I~~~~~-~D~G~Y~C~a~N~~G~~~ 92 (102)
T d1fhga_ 14 TILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCG-DDDAKYTCKAVNSLGEAT 92 (102)
T ss_dssp CCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCSSSEEEEECTTCEEEEEESSCCG-GGCEEEEEEEEETTEEEE
T ss_pred CCCcEEEecCCcEEEEEEEEeccCCeEEEEeeeccccceeeEeEEEecCceeeeEecCCCH-HhCEEEEEEEEECCcEEE
Confidence 456788999999999999999999999999999999888888876544 467899999999 999999999999999999
Q ss_pred EEEEEEEec
Q psy7039 440 ASCKVYVVD 448 (516)
Q Consensus 440 ~s~~l~v~~ 448 (516)
.++.|.|..
T Consensus 93 ~~~~L~V~s 101 (102)
T d1fhga_ 93 CTAELLVET 101 (102)
T ss_dssp EEEEEEEEC
T ss_pred EEEEEEEEE
Confidence 999998864
|
| >d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Titin species: Human (Homo sapiens), different modules [TaxId: 9606]
Probab=99.39 E-value=2.3e-12 Score=99.17 Aligned_cols=87 Identities=24% Similarity=0.350 Sum_probs=76.6
Q ss_pred ccccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEE-EEcCCeEEEEEcCceecCCceEEEEEEEcCCCcee
Q psy7039 361 SIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKF-ETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDS 439 (516)
Q Consensus 361 ~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~-~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s 439 (516)
.+.+..+..|+.+.|.|.+.|.|.|.+.|++++..+..+.++.. ....+...|.|.++.. .|.|.|+|.|.|..|..+
T Consensus 10 ~~~~~~v~~g~~v~l~c~v~g~P~p~v~W~k~~~~i~~~~~~~~~~~~~~~~~L~I~~~~~-~D~G~Y~c~a~N~~G~~~ 88 (98)
T d1g1ca_ 10 RIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTG-EDSASIMVKAINIAGETS 88 (98)
T ss_dssp CCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEEEETTEEEEEECSCCG-GGCEEEEEEEEETTEEEE
T ss_pred CCCcEEEcCCCcEEEEEEEEEecCCeEEEEeCceEEeeeeeeEEEeccceEEEEEeccCcc-ccCEEEEEEEEECCcEEE
Confidence 45678899999999999999999999999999999987766554 3445677899999999 999999999999999999
Q ss_pred EEEEEEEec
Q psy7039 440 ASCKVYVVD 448 (516)
Q Consensus 440 ~s~~l~v~~ 448 (516)
.++.|.|..
T Consensus 89 ~~~~L~V~~ 97 (98)
T d1g1ca_ 89 SHAFLLVQA 97 (98)
T ss_dssp EEEEEEEEC
T ss_pred EEEEEEEEE
Confidence 999999874
|
| >d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Telokin species: Turkey (Meleagris gallopavo) [TaxId: 9103]
Probab=99.39 E-value=8.6e-13 Score=102.42 Aligned_cols=91 Identities=21% Similarity=0.272 Sum_probs=79.0
Q ss_pred CCccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEee-
Q psy7039 113 APRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQT- 191 (516)
Q Consensus 113 ~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~- 191 (516)
+|.|. ..+.++.+.+|+.+.|.|.+. |.|.+.+.|++++..+..+.++.+..
T Consensus 8 ~P~f~-~~~~~~~v~~G~~~~l~C~~~--------------------------g~P~p~v~W~k~~~~i~~~~~~~~~~~ 60 (102)
T d1fhga_ 8 KPYFT-KTILDMEVVEGSAARFDCKVE--------------------------GYPDPEVMWFKDDNPVKESRHFQIDYD 60 (102)
T ss_dssp EEEEE-ECCCCEEEETTSCEEEEEEEE--------------------------EESCCEEEEEETTEECCCSSSEEEEEC
T ss_pred CCeEE-cCCCcEEEecCCcEEEEEEEE--------------------------eccCCeEEEEeeeccccceeeEeEEEe
Confidence 56665 667789999999999999999 99999999999999999888888765
Q ss_pred cCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEEeec
Q psy7039 192 TKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVTG 230 (516)
Q Consensus 192 ~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~~~ 230 (516)
.....+|.|.+++.+|+|.|+|.+.|..|....+..+.+
T Consensus 61 ~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L~V 99 (102)
T d1fhga_ 61 EEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCTAELLV 99 (102)
T ss_dssp TTCEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred cCceeeeEecCCCHHhCEEEEEEEEECCcEEEEEEEEEE
Confidence 445789999999999999999999999998877665543
|
| >d2crza1 b.1.2.1 (A:8-104) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.38 E-value=1.1e-12 Score=100.63 Aligned_cols=87 Identities=36% Similarity=0.605 Sum_probs=71.0
Q ss_pred CCCCcceEEE-eeeCCeeEEEecCCCCCCCCceeceEEEEEeCCC-CeEEeEEeecCCcEEEeCCCcCCCeEEEEEEEec
Q psy7039 14 PGKPTDLEAT-DWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTG-NWEKAVVVPAGETSCTVPGLIEGETYQFQVRAVN 91 (516)
Q Consensus 14 p~~p~~l~~~-~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~-~~~~~~~~~~~~~~~~i~~l~~~~~y~~~~~a~n 91 (516)
|+||..+++. ..++++|.|+|.+|..+++++|.+|.|+++..+. .|..+.. ...++++|.+|++++.|.|+|+|.|
T Consensus 2 P~p~~pp~~~~~~~~~sv~l~W~~P~~~gg~~i~~Y~v~~~~~~~~~~~~~~~--~~~~~~~v~~L~p~t~Y~frV~A~N 79 (97)
T d2crza1 2 PGPCLPPRLQGRPKAKEIQLRWGPPLVDGGSPISCYSVEMSPIEKDEPREVYQ--GSEVECTVSSLLPGKTYSFRLRAAN 79 (97)
T ss_dssp CCCCCCCEECSCCCSSEEEEECCCCSCCTTSCCCEEEEEEECTTSCCCEEEEE--ESCSEEEEESCCTTCEEEECCEEEC
T ss_pred cCcCCCCEEeeeeeCCEEEEEEeCCCcCCCCceeEEEEEEEcCcCCceeEeec--CCceEEEEcCCCCCEEEEEEEEEec
Confidence 4555555554 3567899999999988888899999999998766 7776644 4678999999999999999999999
Q ss_pred CCCCCCCCCCC
Q psy7039 92 AAGPGEASKPT 102 (516)
Q Consensus 92 ~~g~~~~s~~~ 102 (516)
..|.+.++...
T Consensus 80 ~~G~s~~S~~~ 90 (97)
T d2crza1 80 KMGFGPFSEKC 90 (97)
T ss_dssp SSCBCCCCCCE
T ss_pred CCeEcCCcCCC
Confidence 99998876544
|
| >d1x5ga1 b.1.2.1 (A:8-110) Neogenin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Neogenin species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.38 E-value=2.6e-12 Score=99.83 Aligned_cols=89 Identities=25% Similarity=0.432 Sum_probs=74.6
Q ss_pred CCCCCCCCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCC-CeEEeEEeecCCcEEEeCCCcCCCeEEEEE
Q psy7039 9 NPFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTG-NWEKAVVVPAGETSCTVPGLIEGETYQFQV 87 (516)
Q Consensus 9 ~~~~~p~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~-~~~~~~~~~~~~~~~~i~~l~~~~~y~~~~ 87 (516)
....+|++|.+|++..+++++|.|+|.+|. ..+++|.+|.|+|+..+. .|... .....++.|.+|++++.|.|++
T Consensus 6 ~~~~vP~~P~~l~v~~~s~~si~l~W~~P~-~~~g~i~~Y~v~~~~~~~~~~~~~---~~~~~~~~i~~L~p~t~Y~~~V 81 (103)
T d1x5ga1 6 PEVQLPGPAPNLRAYAASPTSITVTWETPV-SGNGEIQNYKLYYMEKGTDKEQDV---DVSSHSYTINGLKKYTEYSFRV 81 (103)
T ss_dssp CCSSCCCCCSSCEEEEEETTEEEEECCCCS-CCSSCCSEEEEEEEETTCCCCCCE---EECSSEEEECSCCTTCEEEEEE
T ss_pred CCCCCcccCCCcEEEEccCCEEEEEEECCc-CCCccEEEEEEEEEeCCCceeEEE---eccccEEecCCCCCCCEEEEEE
Confidence 345789999999999999999999999986 455689999999998766 44332 2367899999999999999999
Q ss_pred EEecCCCCCCCCCC
Q psy7039 88 RAVNAAGPGEASKP 101 (516)
Q Consensus 88 ~a~n~~g~~~~s~~ 101 (516)
+|.|..|.+.++..
T Consensus 82 ~A~n~~G~g~~S~~ 95 (103)
T d1x5ga1 82 VAYNKHGPGVSTPD 95 (103)
T ss_dssp EEECSSCCCCBCCC
T ss_pred EEEcCCcCcCCCCC
Confidence 99999998876643
|
| >d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Titin species: Human (Homo sapiens), different modules [TaxId: 9606]
Probab=99.38 E-value=2.9e-13 Score=102.75 Aligned_cols=86 Identities=26% Similarity=0.464 Sum_probs=78.9
Q ss_pred ccccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeE
Q psy7039 361 SIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSA 440 (516)
Q Consensus 361 ~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~ 440 (516)
.+.++.+.+|+.+.|.|.+.|.|.|.+.|++++..+..+.++.+........|.|.++.. .|+|.|.|.|.|..|..+.
T Consensus 5 ~P~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~-~D~G~Y~C~a~N~~G~~~~ 83 (91)
T d1tnna_ 5 KPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQA-SDEGNYSVVVENSEGKQEA 83 (91)
T ss_dssp CCCCEECSSSSCCCEEEECCCSSCCCCEEESSSSTTCSSSSCEEEECSSEEEEECSSCCS-CCCEEEEEECBCSSCBCCE
T ss_pred CCcCEEEeCCCcEEEEEEEEEEeCCeEEEEEeecccccccceeeeeecceeEEeecCCCH-HHCEEEEEEEEECCCEEEE
Confidence 356788999999999999999999999999999999888888888888889999999999 9999999999999999888
Q ss_pred EEEEEEe
Q psy7039 441 SCKVYVV 447 (516)
Q Consensus 441 s~~l~v~ 447 (516)
++.|.|.
T Consensus 84 ~~~l~V~ 90 (91)
T d1tnna_ 84 EFTLTIQ 90 (91)
T ss_dssp EEEEECC
T ss_pred EEEEEEE
Confidence 8888774
|
| >d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Titin species: Human (Homo sapiens), different modules [TaxId: 9606]
Probab=99.38 E-value=4.8e-13 Score=101.47 Aligned_cols=85 Identities=29% Similarity=0.435 Sum_probs=76.4
Q ss_pred CcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEeecCCeeEE
Q psy7039 119 STLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTTKSETVL 198 (516)
Q Consensus 119 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l 198 (516)
..|.++.+.+|+.+.|.|.+. |.|.+.+.|++++..+....++.+.......+|
T Consensus 4 ~~P~~~~v~~G~~~~l~C~~~--------------------------g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~L 57 (91)
T d1tnna_ 4 TKPRSMTVYEGESARFSCDTD--------------------------GEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTF 57 (91)
T ss_dssp BCCCCEECSSSSCCCEEEECC--------------------------CSSCCCCEEESSSSTTCSSSSCEEEECSSEEEE
T ss_pred eCCcCEEEeCCCcEEEEEEEE--------------------------EEeCCeEEEEEeecccccccceeeeeecceeEE
Confidence 456778999999999999999 999999999999999988888888888889999
Q ss_pred EeccCCCCCCeeEEEEEEcCCCceEEEEEee
Q psy7039 199 DIPFCSRSDTGHYSLTLENNLGTATASAHVT 229 (516)
Q Consensus 199 ~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~~ 229 (516)
.|.+++.+|+|.|+|.+.|..|.......+.
T Consensus 58 ~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~ 88 (91)
T d1tnna_ 58 EISSVQASDEGNYSVVVENSEGKQEAEFTLT 88 (91)
T ss_dssp ECSSCCSCCCEEEEEECBCSSCBCCEEEEEE
T ss_pred eecCCCHHHCEEEEEEEEECCCEEEEEEEEE
Confidence 9999999999999999999999876665443
|
| >d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=99.37 E-value=1.5e-12 Score=98.10 Aligned_cols=82 Identities=26% Similarity=0.363 Sum_probs=73.3
Q ss_pred ccccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeE
Q psy7039 361 SIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSA 440 (516)
Q Consensus 361 ~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~ 440 (516)
.+.+..+..|+.+.|.|.+.|.|.|.+.|++++..+..+.++.+.. ..|.|.++.. .|.|.|+|.|.|..|....
T Consensus 7 ~~~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~g~~i~~~~~~~~~~----~~L~i~~v~~-~D~G~Y~C~a~N~~G~~~~ 81 (89)
T d1cs6a4 7 VITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVSG----GELRFSKLVL-EDSGMYQCVAENKHGTVYA 81 (89)
T ss_dssp CCCCEEEETTCCEEEECEEEEESCCEEEEEETTEECCCCSSEEEET----TEEEESSCCG-GGCEEEEEEEEETTEEEEE
T ss_pred ECCCEEECCCCcEEEEEEEEEEcCCEEEEEEeeccccccceeeeee----eeEEEEeecc-cCCEEEEEEEEeCCCEEEE
Confidence 4567889999999999999999999999999999998777776642 3699999999 9999999999999999888
Q ss_pred EEEEEEe
Q psy7039 441 SCKVYVV 447 (516)
Q Consensus 441 s~~l~v~ 447 (516)
++.|.|.
T Consensus 82 ~~~l~V~ 88 (89)
T d1cs6a4 82 SAELTVQ 88 (89)
T ss_dssp EEEEEEE
T ss_pred EEEEEEE
Confidence 8888885
|
| >d1x5fa1 b.1.2.1 (A:8-114) Neogenin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Neogenin species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.36 E-value=1.9e-12 Score=101.30 Aligned_cols=93 Identities=26% Similarity=0.325 Sum_probs=80.0
Q ss_pred cCCCCCCCCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCC-CeEEeEEeecCCcEEEeCCCcCCCeEEEE
Q psy7039 8 KNPFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTG-NWEKAVVVPAGETSCTVPGLIEGETYQFQ 86 (516)
Q Consensus 8 ~~~~~~p~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~-~~~~~~~~~~~~~~~~i~~l~~~~~y~~~ 86 (516)
.+...+|++|.+|.+..++.++|.|+|.+|..++++.+.+|.|.++..+. .|..........++++|.+|.++..|.|+
T Consensus 5 ~t~~~~P~~P~~l~~~~~~~~sv~lsW~~P~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~t~Y~~r 84 (107)
T d1x5fa1 5 ATTGPLPSAPRDVVASLVSTRFIKLTWRTPASDPHGDNLTYSVFYTKEGIARERVENTSHPGEMQVTIQNLMPATVYIFR 84 (107)
T ss_dssp CCCCCCCCCCEEEEEEEECSSCEEEEEECCSSCSSCCSSEEEEEEEETTCCCCEEEECSSTTCSEEEECSCCTTCEEEEE
T ss_pred CCCCCCCcCCCccEEEEecCCEEEEEEECCccCCCCceEEEEEEEEeCCCCceEEEEEeCCCccEEEecCCCCCCEEEEE
Confidence 45567899999999999999999999999876777889999999998666 56555566677899999999999999999
Q ss_pred EEEecCCCCCCCCC
Q psy7039 87 VRAVNAAGPGEASK 100 (516)
Q Consensus 87 ~~a~n~~g~~~~s~ 100 (516)
++|.|..|.+.++.
T Consensus 85 V~A~n~~G~g~~S~ 98 (107)
T d1x5fa1 85 VMAQNKHGSGESSA 98 (107)
T ss_dssp EEEECSSCEEEECC
T ss_pred EEEEeCCCCcCCCC
Confidence 99999999877644
|
| >d2ibga1 b.1.2.1 (A:573-667) Hedgehog receptor iHog {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Hedgehog receptor iHog species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.36 E-value=2.2e-12 Score=98.68 Aligned_cols=89 Identities=25% Similarity=0.369 Sum_probs=76.2
Q ss_pred CCCCCCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCC--CeEEeEEeecCCcEEEeCCCcCCCeEEEEEE
Q psy7039 11 FDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTG--NWEKAVVVPAGETSCTVPGLIEGETYQFQVR 88 (516)
Q Consensus 11 ~~~p~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~--~~~~~~~~~~~~~~~~i~~l~~~~~y~~~~~ 88 (516)
.+++.+|.++++..++.++|.|+|.+|...++..|.+|.|+|+..+. .|..........+++.|.+|++++.|.|+++
T Consensus 4 ~~P~~~P~~~~v~~~s~tsv~l~W~~P~~~~~~~i~gY~i~y~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~ 83 (95)
T d2ibga1 4 LDPMPVPELLEIEEYSETAVVLHWSLASDADEHLITGYYAYYRPSSSAGEYFKATIEGAHARSFKIAPLETATMYEFKLQ 83 (95)
T ss_dssp SCCCCCCEECCCBCCSSSCEEEEEECCTTCCGGGCCEEEEEEEETTCCSCCEEEEEECTTCCEEEECSCCTTCEEEEEEE
T ss_pred CCCCCCCcCeEEEEeCCCEEEEEEEeeeeccCCcccccceeEeeeeecceeeeeeccCCceeEEEEeeccCCeEEEEEEE
Confidence 45666899999999999999999998876777889999999997544 5766655566788999999999999999999
Q ss_pred EecCCCCCCCC
Q psy7039 89 AVNAAGPGEAS 99 (516)
Q Consensus 89 a~n~~g~~~~s 99 (516)
|.|..|.+.+|
T Consensus 84 A~n~~G~s~~S 94 (95)
T d2ibga1 84 SFSAASASEFS 94 (95)
T ss_dssp EECSSCBCCCC
T ss_pred EEeCCccCCCC
Confidence 99999988765
|
| >d1x5xa1 b.1.2.1 (A:8-103) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.36 E-value=1.1e-12 Score=100.61 Aligned_cols=89 Identities=24% Similarity=0.369 Sum_probs=74.3
Q ss_pred CCCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCCCeEEeEEeecCCcEEEeCCCcCCCeEEEEEEEecCC
Q psy7039 14 PGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVVVPAGETSCTVPGLIEGETYQFQVRAVNAA 93 (516)
Q Consensus 14 p~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~~~a~n~~ 93 (516)
|++|.++++..+++++|.|+|.+|..+++..+..|.++++..+..+..........++++|.+|++++.|.|+|+|.|..
T Consensus 1 P~~P~~~~v~~~~~~si~l~W~~p~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~L~p~t~Y~~rV~A~n~~ 80 (96)
T d1x5xa1 1 PSMPASPVLTKAGITWLSLQWSKPSGTPSDEGISYILEMEEETSGYGFKPKYDGEDLAYTVKNLRRSTKYKFKVIAYNSE 80 (96)
T ss_dssp CCCCCCCEEEEECSSEEEEECCCCSSCCSSSSCEEEEEECCSSSSCCCEEEEEESCSEEEEESCCSSCEEEEEEEEECSS
T ss_pred CccCCCCEEEEecCCEEEEEEEeecccCcceEeeeEEEeeeccceeeeEEeecCCCCEEEECCCCCCCEEEEEEEEEcCC
Confidence 78899999999999999999999987888889999998887666332233344578899999999999999999999999
Q ss_pred CCCCCCCCC
Q psy7039 94 GPGEASKPT 102 (516)
Q Consensus 94 g~~~~s~~~ 102 (516)
|.+.++...
T Consensus 81 G~s~~S~~~ 89 (96)
T d1x5xa1 81 GKSNPSEVV 89 (96)
T ss_dssp CEEEECCCE
T ss_pred cEeCCCCCE
Confidence 988776543
|
| >d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Titin species: Human (Homo sapiens), different modules [TaxId: 9606]
Probab=99.36 E-value=1.8e-12 Score=99.78 Aligned_cols=90 Identities=19% Similarity=0.218 Sum_probs=76.7
Q ss_pred CCccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEe-e
Q psy7039 113 APRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQ-T 191 (516)
Q Consensus 113 ~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~-~ 191 (516)
+|.|. ..+.+..+.+|+.+.|.|.+. |.|.+.+.|++++..+....+.... .
T Consensus 4 aP~f~-~~~~~~~v~~g~~v~l~c~v~--------------------------g~P~p~v~W~k~~~~i~~~~~~~~~~~ 56 (98)
T d1g1ca_ 4 APKIF-ERIQSQTVGQGSDAHFRVRVV--------------------------GKPDPECEWYKNGVKIERSDRIYWYWP 56 (98)
T ss_dssp EEEEE-ECCCCEEEETTSCEEEEEEEE--------------------------EESCCEEEEEETTEECCCCSSEEEEEE
T ss_pred CCeEe-cCCCcEEEcCCCcEEEEEEEE--------------------------EecCCeEEEEeCceEEeeeeeeEEEec
Confidence 56666 667889999999999999999 9999999999999999887775543 4
Q ss_pred cCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEEee
Q psy7039 192 TKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVT 229 (516)
Q Consensus 192 ~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~~ 229 (516)
.++..+|.|.+++.+|+|.|+|.+.|..|.......+.
T Consensus 57 ~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~~~L~ 94 (98)
T d1g1ca_ 57 EDNVCELVIRDVTGEDSASIMVKAINIAGETSSHAFLL 94 (98)
T ss_dssp ETTEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEE
T ss_pred cceEEEEEeccCccccCEEEEEEEEECCcEEEEEEEEE
Confidence 56678999999999999999999999999877665443
|
| >d2haza1 b.1.2.1 (A:489-589) Neural cell adhesion molecule 1, NCAM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Neural cell adhesion molecule 1, NCAM species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.35 E-value=2.2e-12 Score=99.91 Aligned_cols=90 Identities=27% Similarity=0.391 Sum_probs=74.6
Q ss_pred CCCCCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCC-CeEEeEEe---ecCCcEEEeCCCcCCCeEEEEE
Q psy7039 12 DEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTG-NWEKAVVV---PAGETSCTVPGLIEGETYQFQV 87 (516)
Q Consensus 12 ~~p~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~-~~~~~~~~---~~~~~~~~i~~l~~~~~y~~~~ 87 (516)
+.|++|..+.+. ..++++.|+|.+|..++|.+|.+|.|+|+..++ .|...... ......++|.+|.+++.|.|++
T Consensus 1 DvP~~P~~~~~~-~~~~sv~l~W~~P~~~gg~~I~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~frV 79 (101)
T d2haza1 1 DTPSSPSIDQVE-PYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASMEGIVTIVGLKPETTYAVRL 79 (101)
T ss_dssp CCCCCCEEEEEE-ECSSCEEEEEECCSCCTTSCCCEEEEEEEETTCCCCEEEEEEHHHHHHHSEEEECSCCTTCEEEEEE
T ss_pred CcCcCCccCEEE-eeCCEEEEEEeCCCcCccccEEEEEEEEeecCCcceeeeeeeeecccceeEEEecCCCCCeEEEEEE
Confidence 579999876654 778899999999988888899999999998766 66655432 1346789999999999999999
Q ss_pred EEecCCCCCCCCCCC
Q psy7039 88 RAVNAAGPGEASKPT 102 (516)
Q Consensus 88 ~a~n~~g~~~~s~~~ 102 (516)
+|.|..|.+.++...
T Consensus 80 ~A~N~~G~g~~S~~~ 94 (101)
T d2haza1 80 AALNGKGLGEISAAS 94 (101)
T ss_dssp EEEETTEECCCCCCE
T ss_pred EEEeCCcCcCCCCce
Confidence 999999999887644
|
| >d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=99.32 E-value=2.4e-12 Score=96.93 Aligned_cols=85 Identities=25% Similarity=0.316 Sum_probs=72.3
Q ss_pred CccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEeecC
Q psy7039 114 PRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTTK 193 (516)
Q Consensus 114 p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~ 193 (516)
|.|. ..+.++.+..|+.+.|.|.+. |.|.+.+.|++++..+....++.+.
T Consensus 2 P~f~-~~~~~~~v~~G~~~~l~C~~~--------------------------g~P~p~v~W~k~g~~i~~~~~~~~~--- 51 (89)
T d1cs6a4 2 PDWL-DVITDTEADIGSDLRWSCVAS--------------------------GKPRPAVRWLRDGQPLASQNRIEVS--- 51 (89)
T ss_dssp EEEE-ECCCCEEEETTCCEEEECEEE--------------------------EESCCEEEEEETTEECCCCSSEEEE---
T ss_pred CCeE-EECCCEEECCCCcEEEEEEEE--------------------------EEcCCEEEEEEeeccccccceeeee---
Confidence 3444 566778999999999999999 9999999999999999888777664
Q ss_pred CeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEEee
Q psy7039 194 SETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVT 229 (516)
Q Consensus 194 ~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~~ 229 (516)
...|.|.+++.+|+|.|+|.+.|..|.......+.
T Consensus 52 -~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~ 86 (89)
T d1cs6a4 52 -GGELRFSKLVLEDSGMYQCVAENKHGTVYASAELT 86 (89)
T ss_dssp -TTEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEE
T ss_pred -eeeEEEEeecccCCEEEEEEEEeCCCEEEEEEEEE
Confidence 34799999999999999999999999876655443
|
| >d2ic2a1 b.1.2.1 (A:466-572) Hedgehog receptor iHog {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Hedgehog receptor iHog species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.32 E-value=2.8e-12 Score=100.43 Aligned_cols=91 Identities=24% Similarity=0.376 Sum_probs=70.4
Q ss_pred CCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCC--CeEEeEEe-----------ecCCcEEEeCCCcCCCe
Q psy7039 16 KPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTG--NWEKAVVV-----------PAGETSCTVPGLIEGET 82 (516)
Q Consensus 16 ~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~--~~~~~~~~-----------~~~~~~~~i~~l~~~~~ 82 (516)
||..++++.+++++|.|+|.+|. ++|++|.+|.|+|+..+. .|...... .....+++|.+|++++.
T Consensus 2 PP~~p~v~~~~~~sv~l~W~~P~-~~g~~I~~Y~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~ 80 (107)
T d2ic2a1 2 PPTPPNVTRLSDESVMLRWMVPR-NDGLPIVIFKVQYRMVGKRKNWQTTNDNIPYGKPKWNSELGKSFTASVTDLKPQHT 80 (107)
T ss_dssp CCCCCEEEECC---EEEEEEEEC-CSSCCEEEEEEEEEECC---CCEEEEEEEECCSCSCSSSSEEEEEEEECSCCSSEE
T ss_pred cCcCCEEEEEECCEEEEEEEeCc-cccCCceEEEEEEEeccCCCcceEEEeeeeccceeeeecccceeEEEECCCcCCcE
Confidence 56666788899999999999995 778899999999987543 66654432 12356899999999999
Q ss_pred EEEEEEEecCCCCCCCCCCCcceEe
Q psy7039 83 YQFQVRAVNAAGPGEASKPTAPIVA 107 (516)
Q Consensus 83 y~~~~~a~n~~g~~~~s~~~~~~~~ 107 (516)
|.|+|.|.|..|.+.+|..+..+..
T Consensus 81 Y~frV~A~N~~G~s~~S~~s~~~~~ 105 (107)
T d2ic2a1 81 YRFRILAVYSNNDNKESNTSAKFYL 105 (107)
T ss_dssp EEEEEEEEETTSCEEECCCCCCEEE
T ss_pred EEEEEEEEcCCCCCCCCCCCCCEEc
Confidence 9999999999999988877765554
|
| >d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Hemolin species: Moth (Hyalophora cecropia) [TaxId: 7123]
Probab=99.30 E-value=2.9e-12 Score=96.50 Aligned_cols=85 Identities=27% Similarity=0.319 Sum_probs=69.0
Q ss_pred CCccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEeec
Q psy7039 113 APRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTT 192 (516)
Q Consensus 113 ~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~ 192 (516)
+|.|...+...+.+.+|+.+.|.|.+. |.|.+.+.|++++..+.. .++.+.
T Consensus 2 aP~f~~~p~~~~~v~~G~~~~l~C~~~--------------------------g~P~p~v~W~~~~~~i~~-~~~~~~-- 52 (89)
T d1biha4 2 APKYEQKPEKVIVVKQGQDVTIPCKVT--------------------------GLPAPNVVWSHNAKPLSG-GRATVT-- 52 (89)
T ss_dssp EEEEEECCCSEEEECTTSCEEEECEEE--------------------------EESCCCCEEEETTEECCS-SSEEEE--
T ss_pred CCeEEECCCCCEEEeCCCeEEEEEEEE--------------------------EeCCCEEEEEeCCccCcc-ccEEEe--
Confidence 455553445567889999999999999 999999999999998864 455443
Q ss_pred CCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEEe
Q psy7039 193 KSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHV 228 (516)
Q Consensus 193 ~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~ 228 (516)
...|.|.+++..|+|.|+|.+.|..|.......+
T Consensus 53 --~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l 86 (89)
T d1biha4 53 --DSGLVIKGVKNGDKGYYGCRATNEHGDKYFETLV 86 (89)
T ss_dssp --TTEEEESSCCSTTCEEEEEEEEETTEEEEEEEEE
T ss_pred --eeeEEECCCChhhCEEEEEEEEECCCEEEEEEEE
Confidence 2369999999999999999999999987766544
|
| >d1x5ha1 b.1.2.1 (A:8-126) Neogenin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Neogenin species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.30 E-value=2.3e-12 Score=103.11 Aligned_cols=98 Identities=24% Similarity=0.450 Sum_probs=80.8
Q ss_pred eeccCCCCCCC-CCcceEEEeeeCCeeEEEecCCC-CCCCCceeceEEEEEeCCC-CeEEeEEeecCCcEEEeCCCcCCC
Q psy7039 5 VLIKNPFDEPG-KPTDLEATDWDKDHVDLQWTPPI-SDGGSPITGYVVEMKDKTG-NWEKAVVVPAGETSCTVPGLIEGE 81 (516)
Q Consensus 5 ~~~~~~~~~p~-~p~~l~~~~~~~~~v~l~W~~p~-~~~~~~i~~Y~v~~~~~~~-~~~~~~~~~~~~~~~~i~~l~~~~ 81 (516)
|.+++.++.|. +|.++++..+++++|.|+|.+|. ...++.|.+|.|+|+..+. .+...........++.|.+|+++.
T Consensus 2 v~v~T~~~~P~~~P~~v~~~~~~~~si~v~W~~p~~~~~ng~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t 81 (119)
T d1x5ha1 2 VAVRTLSDVPSAAPQNLSLEVRNSKSIMIHWQPPAPATQNGQITGYKIRYRKASRKSDVTETLVSGTQLSQLIEGLDRGT 81 (119)
T ss_dssp CCCCCCCSSCCCCCEEEEEECCSSSEEEEEEECCCTTTCCSCEEEEBCEEEETTEEEEEECCBCCTTCCEEEEECCCSSC
T ss_pred EEEEcCCCCCCCCCcCeEEEEecCcEEEEEEEcccccCCCCCEEEEEEEEeecccccceeeeecCCCccEEEeCCCCCCC
Confidence 56889999885 89999999999999999999874 3344579999999988766 444444455678899999999999
Q ss_pred eEEEEEEEecCCCCCCCCCCC
Q psy7039 82 TYQFQVRAVNAAGPGEASKPT 102 (516)
Q Consensus 82 ~y~~~~~a~n~~g~~~~s~~~ 102 (516)
.|.|+++|.|..|.+.+|...
T Consensus 82 ~Y~~~V~A~n~~G~G~~S~~~ 102 (119)
T d1x5ha1 82 EYNFRVAALTINGTGPATDWL 102 (119)
T ss_dssp EEEEECEEEETTEEEEECCCE
T ss_pred EEEEEEEEEcCCcCCCCCCCE
Confidence 999999999999988766543
|
| >d1x4xa1 b.1.2.1 (A:8-100) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.30 E-value=7.1e-12 Score=95.31 Aligned_cols=84 Identities=23% Similarity=0.374 Sum_probs=71.3
Q ss_pred CCCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCCCeEEeEEeecCCcEEEeCCCcCCCeEEEEEEEecCC
Q psy7039 14 PGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVVVPAGETSCTVPGLIEGETYQFQVRAVNAA 93 (516)
Q Consensus 14 p~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~~~a~n~~ 93 (516)
|++|.++.+..+++++|.|+|.+|. +++++|.+|.|++...++.+.... ....++++|.+|.+++.|.|+|+|.|..
T Consensus 1 P~~P~~~~v~~~s~~si~l~W~~p~-~~~~~i~~Y~v~~~~~~~~~~~~~--~~~~~~~~i~~L~p~t~Y~~~V~A~n~~ 77 (93)
T d1x4xa1 1 PDQCKPPQVTCRSATCAQVNWEVPL-SNGTDVTEYRLEWGGVEGSMQICY--CGPGLSYEIKGLSPATTYYCRVQALSVV 77 (93)
T ss_dssp CCCCCCCCCEEEETTEEEEECCCCS-CSSSCCCEEEEEEESSTTSCCEEE--EESCSEEEEESCCSSCEEEEEEEEECSS
T ss_pred CcCCCCCEEEEeCCCeEEEEEEecc-cCCCeeEEEEEEEccCCCcceEee--cCCccEEEEcccceeeEEEEEEEEEECC
Confidence 7888889999999999999999986 556789999999998776443333 3468899999999999999999999999
Q ss_pred CCCCCCC
Q psy7039 94 GPGEASK 100 (516)
Q Consensus 94 g~~~~s~ 100 (516)
|.+.++.
T Consensus 78 G~s~~S~ 84 (93)
T d1x4xa1 78 GAGPFSE 84 (93)
T ss_dssp CCCCBCC
T ss_pred cCcCCCC
Confidence 9888764
|
| >d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fibroblast growth factor receptor, FGFR species: Human (Homo sapiens), FGFR2a [TaxId: 9606]
Probab=99.30 E-value=2.6e-12 Score=98.56 Aligned_cols=84 Identities=29% Similarity=0.402 Sum_probs=69.5
Q ss_pred ccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCce-EEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEE
Q psy7039 363 RDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRI-KFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSAS 441 (516)
Q Consensus 363 ~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~-~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s 441 (516)
..+.+..|+.+.|.|.+.|.|.|.+.|++++..+..+.++ .........+|.|.++.. .|.|.|+|.|.|..|..+.+
T Consensus 13 ~~~~v~~G~~v~l~C~~~g~P~p~i~W~kng~~l~~~~~~~~~~~~~~~~~L~I~~v~~-~D~G~Y~C~a~N~~G~~~~~ 91 (97)
T d3dara1 13 RLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVP-SDKGNYTCVVENEYGSINHT 91 (97)
T ss_dssp CEEEECTTCCEEEECCEEEESCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCG-GGCEEEEEEEEETTEEEEEE
T ss_pred ccEEECCCCcEEEEEEEeEECCCEEEEEECCEeccccCceeeEEEcCCcEEEEECCCCc-ccCEEEEEEEEECCCEEEEE
Confidence 4457889999999999999999999999999988654432 222233445799999999 99999999999999999888
Q ss_pred EEEEEe
Q psy7039 442 CKVYVV 447 (516)
Q Consensus 442 ~~l~v~ 447 (516)
+.|.|.
T Consensus 92 ~~l~Vl 97 (97)
T d3dara1 92 YHLDVV 97 (97)
T ss_dssp EEEEEC
T ss_pred EEEEEC
Confidence 888873
|
| >d1x5la1 b.1.2.1 (A:8-105) Ephrin type-A receptor 8 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Ephrin type-A receptor 8 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.28 E-value=5.4e-12 Score=96.95 Aligned_cols=90 Identities=28% Similarity=0.380 Sum_probs=74.2
Q ss_pred CCCCCCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCCCeEEeEEeecCCcEEEeCCCcCCCeEEEEEEEe
Q psy7039 11 FDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVVVPAGETSCTVPGLIEGETYQFQVRAV 90 (516)
Q Consensus 11 ~~~p~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~~~a~ 90 (516)
++.|++|.++++..+++++|.|+|.+|... +++|.+|+|+|+..+..+...........+++|.+|.++..|.|+++|.
T Consensus 1 qa~P~~p~~~~~~~~s~~si~v~W~~P~~~-~g~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~ 79 (98)
T d1x5la1 1 QAAPSQVVVIRQERAGQTSVSLLWQEPEQP-NGIILEYEIKYYEKDKEMQSYSTLKAVTTRATVSGLKPGTRYVFQVRAR 79 (98)
T ss_dssp CCCCCCCCCEECSCBCSSCEEEEECCCSCC-CSCCCEEEEEEEESSSCCSSCEEEEESSSEEEECSCCTTCEEEECEEEE
T ss_pred CcCCCCCCceEEEeccCCEEEEEEECCCCC-CCCEEEEEEEeecccccceeeEEecCCceEEEECCCCCCCEEEEEEEEE
Confidence 467999999999999999999999998644 4579999999998665222223344578999999999999999999999
Q ss_pred cCCCCCCCCCC
Q psy7039 91 NAAGPGEASKP 101 (516)
Q Consensus 91 n~~g~~~~s~~ 101 (516)
|..|.+.++..
T Consensus 80 n~~G~g~~S~~ 90 (98)
T d1x5la1 80 TSAGCGRFSQA 90 (98)
T ss_dssp ETTEECCCCCC
T ss_pred cCCCCcCCCCC
Confidence 99998876653
|
| >d1qg3a2 b.1.2.1 (A:1218-1320) Integrin beta-4 subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Integrin beta-4 subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.28 E-value=8.6e-12 Score=96.88 Aligned_cols=88 Identities=24% Similarity=0.353 Sum_probs=74.5
Q ss_pred CCCCCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCC------CeEEeEEeecCCcEEEeCCCcCCCeEEE
Q psy7039 12 DEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTG------NWEKAVVVPAGETSCTVPGLIEGETYQF 85 (516)
Q Consensus 12 ~~p~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~------~~~~~~~~~~~~~~~~i~~l~~~~~y~~ 85 (516)
++|++|.+|++..++++++.|+|.+|. +.++++.+|.|+|+.... .|...........+++|.+|+++..|.|
T Consensus 1 d~P~~P~~~~~~~~~~~sv~v~W~~P~-~~~g~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~ 79 (103)
T d1qg3a2 1 EVPSEPGRLAFNVVSSTVTQLSWAEPA-ETNGEITAYEVCYGLVNDDNRPIGPMKKVLVDNPKNRMLLIENLRESQPYRY 79 (103)
T ss_dssp CCCCCCCCCEEEEEETTEEEEECCCCS-CCSSCCCEEEEEEEEBCTTSCBCSCCEEEEECCTTCCEEEECCCCTTCCEEE
T ss_pred CcCccCCCcEEEEecCCEEEEEEEECc-cCCCCceEEEEEeeccccccccccceEEEEecCCCceEEEEeecCCCCEEEE
Confidence 579999999999999999999999985 556789999999986432 3555555556788999999999999999
Q ss_pred EEEEecCCCCCCCCC
Q psy7039 86 QVRAVNAAGPGEASK 100 (516)
Q Consensus 86 ~~~a~n~~g~~~~s~ 100 (516)
+++|.|..|.+.++.
T Consensus 80 ~V~A~n~~G~g~~s~ 94 (103)
T d1qg3a2 80 TVKARNGAGWGPERE 94 (103)
T ss_dssp EEEEEETTEECCCEE
T ss_pred EEEEEcCCccCCCcc
Confidence 999999999887543
|
| >d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.27 E-value=1.3e-11 Score=93.36 Aligned_cols=85 Identities=22% Similarity=0.305 Sum_probs=71.7
Q ss_pred cccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEEEEcCC--eEEEEEcCceecCCceEEEEEEEcCCCce-
Q psy7039 362 IRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSEN--QTIYRNKSAKRATDSGSYTIQLVNTVGSD- 438 (516)
Q Consensus 362 ~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~--~~~l~i~~~~~~~~~g~y~c~a~n~~G~~- 438 (516)
+.++.+..|+.+.|.|.+.|.|.+.+.|++++..+....+..+..... ...|.|.++.. .|.|.|+|.|.|..|..
T Consensus 3 P~~~~v~~G~~~~l~C~v~g~p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~L~I~~~~~-~D~G~Y~C~a~N~~G~~~ 81 (91)
T d1rhfa1 3 PVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVER-SDAGRYWCQVEDGGETEI 81 (91)
T ss_dssp CEEEEEETTCCEEEEEEEESCSSCCEEEEETTEECCSSEEEEEEEETTEEEEEEEESSCCG-GGCEEEEEEESSCTTCEE
T ss_pred CeeEEEcCCCeEEEEEEEEecCCceEEEEEeecccccceeeeeeecccCceeeEEECCCCc-ccCEEEEEEEEECCCCEE
Confidence 567889999999999999999999999999999987666655544333 35799999999 99999999999999974
Q ss_pred eEEEEEEEe
Q psy7039 439 SASCKVYVV 447 (516)
Q Consensus 439 s~s~~l~v~ 447 (516)
+..+.|.|.
T Consensus 82 S~~~~l~V~ 90 (91)
T d1rhfa1 82 SQPVWLTVE 90 (91)
T ss_dssp CCCEEEEEE
T ss_pred EEEEEEEEE
Confidence 667888775
|
| >d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Neural cell adhesion molecule (NCAM) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.27 E-value=6.7e-12 Score=96.89 Aligned_cols=84 Identities=23% Similarity=0.366 Sum_probs=69.2
Q ss_pred cEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCC--ceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEE
Q psy7039 364 DMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDG--RIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSAS 441 (516)
Q Consensus 364 ~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~--~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s 441 (516)
+..+..|+.+.|.|.+.|.|.|.+.|++++..+.... ..........+.|.|.++.. .|.|.|+|.|.|..|..+.+
T Consensus 14 ~~t~~~G~~v~l~C~~~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~L~I~~v~~-~D~G~Y~C~a~N~~G~~~~~ 92 (100)
T d1qz1a3 14 NATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDK-NDEAEYVCIAENKAGEQDAS 92 (100)
T ss_dssp EEETTSCCCEEEEEEEEEESCCEEEEEETTEECCCC--CCSSEEECTTSCEEEECSCCG-GGCEEEEEEEEETTEEEEEE
T ss_pred eEEEcCCCCEEEEEEEEEecCCEEEEEeCCcccccccccceeEEeecCceEEEeCCCCc-ccCEEEEEEEEECCCEEEEE
Confidence 3455689999999999999999999999998875432 22223344556899999999 99999999999999999999
Q ss_pred EEEEEec
Q psy7039 442 CKVYVVD 448 (516)
Q Consensus 442 ~~l~v~~ 448 (516)
+.|.|..
T Consensus 93 ~~l~V~~ 99 (100)
T d1qz1a3 93 IHLKVFA 99 (100)
T ss_dssp EEEEEEC
T ss_pred EEEEEEE
Confidence 9998865
|
| >d1x5za1 b.1.2.1 (A:8-109) Receptor-type tyrosine-protein phosphatase delta, PTPRD {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Receptor-type tyrosine-protein phosphatase delta, PTPRD species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.27 E-value=4.2e-12 Score=98.50 Aligned_cols=91 Identities=24% Similarity=0.416 Sum_probs=75.0
Q ss_pred eeccCCCCCCCCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCC-CeEEeEEeecCCcEEEeCCCcCCCeE
Q psy7039 5 VLIKNPFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTG-NWEKAVVVPAGETSCTVPGLIEGETY 83 (516)
Q Consensus 5 ~~~~~~~~~p~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~-~~~~~~~~~~~~~~~~i~~l~~~~~y 83 (516)
|-+.+..++|++|.++++..+++++|.|+|.+|. + ..|.+|.|+|+..+. .+.... ....++++|.+|++++.|
T Consensus 2 v~v~T~~~vP~~P~~~~~~~~~~~si~l~W~~p~-~--~~i~~Y~i~y~~~~~~~~~~~~--~~~~~~~~i~~L~p~t~Y 76 (102)
T d1x5za1 2 IQVITQTGVPGQPLNFKAEPESETSILLSWTPPR-S--DTIANYELVYKDGEHGEEQRIT--IEPGTSYRLQGLKPNSLY 76 (102)
T ss_dssp CCCCCCSCCCCCCEEEEEECSSSSEEEEEEECCS-C--CCCCEEEECBEESSSCCCBCCE--ECSSSEEEEECCCTTCEE
T ss_pred eEEECCCCCCcCCCCeEEEEccCCEEEEEEECCC-C--CCccceEEEEEeCCCCceEEEE--cCCcCEEEECCCCCCCEE
Confidence 4567888999999999999999999999999974 2 358999999998665 333222 235678999999999999
Q ss_pred EEEEEEecCCCCCCCCC
Q psy7039 84 QFQVRAVNAAGPGEASK 100 (516)
Q Consensus 84 ~~~~~a~n~~g~~~~s~ 100 (516)
.|+++|.|..|.+.++.
T Consensus 77 ~~~V~A~n~~G~g~~S~ 93 (102)
T d1x5za1 77 YFRLAARSPQGLGASTA 93 (102)
T ss_dssp EECEEEECSSCEEEECC
T ss_pred EEEEEEEcCCCEeCCCC
Confidence 99999999999876654
|
| >d1x5aa1 b.1.2.1 (A:8-101) Ephrin type-A receptor 1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Ephrin type-A receptor 1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.27 E-value=2.4e-11 Score=92.28 Aligned_cols=86 Identities=19% Similarity=0.315 Sum_probs=73.0
Q ss_pred CCCCCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCCCeEEeEEeecCCcEEEeCCCcCCCeEEEEEEEec
Q psy7039 12 DEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVVVPAGETSCTVPGLIEGETYQFQVRAVN 91 (516)
Q Consensus 12 ~~p~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~~~a~n 91 (516)
++|.+|.+|+++..+.++|.|+|.+|..+.+..+++|.|++...+..+... ...++++|.+|++++.|.|+|+|.|
T Consensus 1 a~p~~p~~L~~~~~~~~si~vsW~~p~~~~~~~~i~Y~i~~~~~~~~~~~~----~~~t~~~i~~L~p~t~Y~~rV~A~n 76 (94)
T d1x5aa1 1 AESLSGLSLKLVKKEPRQLELTWAGSRPRNPGGNLSYELHVLNQDEEWHQM----VLEPRVLLTKLQPDTTYIVRVRTLT 76 (94)
T ss_dssp CCCCCSCCCCEEEEETTEEEEECCCCCSSCCSSCCEEEEEEECSSCEEEEE----ESSSEEEEESCCSSCEEEEEEEEEC
T ss_pred CcCCCCCceEEEEcCCCEEEEEEecccCCCCCcEEEEEEEEecCCceEEEe----eccCEEEECCCCCCCEEEEEEEEEc
Confidence 468899999999999999999999986566677889999999877643332 2578999999999999999999999
Q ss_pred CCCCCCCCCC
Q psy7039 92 AAGPGEASKP 101 (516)
Q Consensus 92 ~~g~~~~s~~ 101 (516)
..|.+.++..
T Consensus 77 ~~G~g~~S~~ 86 (94)
T d1x5aa1 77 PLGPGPFSPD 86 (94)
T ss_dssp SSSCCCCCCC
T ss_pred CCcCcCCCCC
Confidence 9998887653
|
| >d2fnba_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin, different Fn3 modules species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.26 E-value=1.7e-11 Score=93.57 Aligned_cols=85 Identities=26% Similarity=0.326 Sum_probs=73.0
Q ss_pred CCCCCCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCC-CeEEeEEeecCCcEEEeCCCcCCCeEEEEEEE
Q psy7039 11 FDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTG-NWEKAVVVPAGETSCTVPGLIEGETYQFQVRA 89 (516)
Q Consensus 11 ~~~p~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~-~~~~~~~~~~~~~~~~i~~l~~~~~y~~~~~a 89 (516)
.++| +|.+|++..++++++.|+|.+|. ++.+.+|+|+++..++ .|..........++++|.+|.++..|.|++.|
T Consensus 4 ~~vp-~P~~l~v~~~t~~si~l~W~~p~---~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~t~~~i~~L~p~t~Y~~~V~a 79 (95)
T d2fnba_ 4 SEVP-QLTDLSFVDITDSSIGLRWTPLN---SSTIIGYRITVVAAGEGIPIFEDFVDSSVGYYTVTGLEPGIDYDISVIT 79 (95)
T ss_dssp CCSC-CCTTCEEECCCSSCEEEECCCCC---CSSCCEEEEEEEEETSCCEEEEEECCSSCSEEEECCCCTTSEEEEEEEE
T ss_pred CCcC-cCCCeEEEEEcCCEEEEEEEecC---CceEEeEEEEEEEeeccceEEEEEeCCCCeEEEEecccCCEEEEEEEEE
Confidence 4566 79999999999999999999873 3468999999998665 67777777778899999999999999999999
Q ss_pred ecCCCCCCCC
Q psy7039 90 VNAAGPGEAS 99 (516)
Q Consensus 90 ~n~~g~~~~s 99 (516)
.|..|.+.++
T Consensus 80 ~~~~g~s~p~ 89 (95)
T d2fnba_ 80 LINGGESAPT 89 (95)
T ss_dssp EETTEECCCC
T ss_pred EeCCcEeCCE
Confidence 9998887654
|
| >d2d9qb2 b.1.2.1 (B:204-308) Granulocyte colony-stimulating factor (GC-SF) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Granulocyte colony-stimulating factor (GC-SF) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.26 E-value=1.1e-11 Score=96.50 Aligned_cols=98 Identities=19% Similarity=0.253 Sum_probs=75.2
Q ss_pred CCCCCCCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCC--CeEEeEEeecCCcEEEeCCCcCCCeEEEEE
Q psy7039 10 PFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTG--NWEKAVVVPAGETSCTVPGLIEGETYQFQV 87 (516)
Q Consensus 10 ~~~~p~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~--~~~~~~~~~~~~~~~~i~~l~~~~~y~~~~ 87 (516)
|...|..|..+.+...+.++|.|+|.+|. +++..+.+|.|+|+...+ .|..........+++.|.+|.+++.|.|+|
T Consensus 3 PP~~~~~P~~p~~~~~~~~~v~l~W~pp~-~~~~~~~~y~i~y~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~frV 81 (105)
T d2d9qb2 3 PPMLRTMDPSPEAAPPQAGCLQLSWEPWQ-PGLHINQKCELRHKPQRGEASWALVGPLPLEALQYELCGLLPATAYTLQI 81 (105)
T ss_dssp CCEEEECCC-------CCSCEEEEEECCG-GGTTSCEEEEEEEEESSSCCCCEEEEEECSCEEEEEECSCCSCCCEEEEE
T ss_pred CCCCCCCCCCCEeecCCCCeEEEEEcCCC-CCCceeEEEEEEEEecCCccceeeeecccCCcceeEEecccCCeEEEEEE
Confidence 44445778888898899999999999985 445578999999997543 787777777778899999999999999999
Q ss_pred EEecCCCCCCCCCCCcceEec
Q psy7039 88 RAVNAAGPGEASKPTAPIVAK 108 (516)
Q Consensus 88 ~a~n~~g~~~~s~~~~~~~~~ 108 (516)
+|.|..|.+.+|..+..+...
T Consensus 82 ra~n~~g~G~~S~wS~~~~~~ 102 (105)
T d2d9qb2 82 RCIRWPLPGHWSDWSPSLELR 102 (105)
T ss_dssp EEEECSSCCCCCCCCCCEEEC
T ss_pred EEEeCCCCCCCcCCCCCEEEe
Confidence 999999999888877666553
|
| >d1cd9b2 b.1.2.1 (B:108-213) Granulocyte colony-stimulating factor (GC-SF) receptor {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Granulocyte colony-stimulating factor (GC-SF) receptor species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.26 E-value=1.4e-11 Score=96.12 Aligned_cols=98 Identities=16% Similarity=0.242 Sum_probs=76.0
Q ss_pred CCCCCCCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeC-CC-CeEEeEEeecCCcEEEeCCCcCCCeEEEEE
Q psy7039 10 PFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDK-TG-NWEKAVVVPAGETSCTVPGLIEGETYQFQV 87 (516)
Q Consensus 10 ~~~~p~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~-~~-~~~~~~~~~~~~~~~~i~~l~~~~~y~~~~ 87 (516)
|...|..|..+.+.....++|.|+|.+|. +++..+.+|.|+|+.. ++ .|..+.......++++|.+|.+++.|.|+|
T Consensus 4 PP~~~~~P~~p~~~~~~~~~i~v~W~pp~-~~~~~~~~Y~i~y~~~~~~~~w~~v~~~~~~~~~~~l~~L~p~t~Y~frV 82 (106)
T d1cd9b2 4 PPMLQALDIGPDVVSHQPGCLWLSWKPWK-PSEYMEQECELRYQPQLKGANWTLVFHLPSSKDQFELCGLHQAPVYTLQM 82 (106)
T ss_dssp CCEEEECCC-------CCSCEEEEEECCG-GGTTSCEEEEEEEEESSTTCCCEEEEEEESCEEEEEECCCCSCSCEEEEE
T ss_pred CCCCCCCCCCCeEecCCCCEEEEEEcCcc-cCCccceEEEEEEeeccccccceeeecccCCceEEEEeccCCCeEEEEEE
Confidence 33344677777888889999999999985 5556789999999874 44 898887777788999999999999999999
Q ss_pred EEecCCCCCCCCCCCcceEec
Q psy7039 88 RAVNAAGPGEASKPTAPIVAK 108 (516)
Q Consensus 88 ~a~n~~g~~~~s~~~~~~~~~ 108 (516)
+|++..|.+.+|..+..+..+
T Consensus 83 ra~~~~g~g~wS~wS~~~~~~ 103 (106)
T d1cd9b2 83 RCIRSSLPGFWSPWSPGLQLR 103 (106)
T ss_dssp EEEESSSCCCCCCCCCCEEEC
T ss_pred EEEeCCCCCCCcCCCCCeEec
Confidence 999999999988888777654
|
| >d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Hemolin species: Moth (Hyalophora cecropia) [TaxId: 7123]
Probab=99.26 E-value=1.6e-11 Score=92.29 Aligned_cols=78 Identities=27% Similarity=0.419 Sum_probs=66.8
Q ss_pred ccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEEE
Q psy7039 363 RDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASC 442 (516)
Q Consensus 363 ~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~ 442 (516)
..+.+.+|+.+.|.|.+.|.|.|.+.|++++..+.. .++.+. .+ .|.|.++.. .|.|.|+|.|.|..|.....+
T Consensus 11 ~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~~~~i~~-~~~~~~--~~--~L~i~~v~~-~d~G~Y~C~a~N~~G~~~~~~ 84 (89)
T d1biha4 11 KVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSG-GRATVT--DS--GLVIKGVKN-GDKGYYGCRATNEHGDKYFET 84 (89)
T ss_dssp SEEEECTTSCEEEECEEEEESCCCCEEEETTEECCS-SSEEEE--TT--EEEESSCCS-TTCEEEEEEEEETTEEEEEEE
T ss_pred CCEEEeCCCeEEEEEEEEEeCCCEEEEEeCCccCcc-ccEEEe--ee--eEEECCCCh-hhCEEEEEEEEECCCEEEEEE
Confidence 446788999999999999999999999999998864 344443 22 499999999 999999999999999988888
Q ss_pred EEEE
Q psy7039 443 KVYV 446 (516)
Q Consensus 443 ~l~v 446 (516)
.|.|
T Consensus 85 ~l~V 88 (89)
T d1biha4 85 LVQV 88 (89)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8876
|
| >d1cfba2 b.1.2.1 (A:710-814) Neuroglian, two amino proximal Fn3 repeats {Drosophila melanogaster [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Neuroglian, two amino proximal Fn3 repeats species: Drosophila melanogaster [TaxId: 7227]
Probab=99.25 E-value=2.4e-11 Score=94.59 Aligned_cols=92 Identities=16% Similarity=0.249 Sum_probs=76.2
Q ss_pred CCCCCCCcceEEEeeeCCeeEEEecCCC-CCCCCceeceEEEEEeCCC--CeEEeEEeecCCcEEEeCCCcCCCeEEEEE
Q psy7039 11 FDEPGKPTDLEATDWDKDHVDLQWTPPI-SDGGSPITGYVVEMKDKTG--NWEKAVVVPAGETSCTVPGLIEGETYQFQV 87 (516)
Q Consensus 11 ~~~p~~p~~l~~~~~~~~~v~l~W~~p~-~~~~~~i~~Y~v~~~~~~~--~~~~~~~~~~~~~~~~i~~l~~~~~y~~~~ 87 (516)
..++.+|.++++..++.++|.|+|.+|. .+.++++.+|.|.|+..+. .|..........++++|.+|.++..|.|+|
T Consensus 2 ~~P~~~P~~v~~~~~~~~si~v~W~p~~~~~~ng~i~~Y~I~y~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V 81 (105)
T d1cfba2 2 DVPFKNPDNVVGQGTEPNNLVISWTPMPEIEHNAPNFHYYVSWKRDIPAAAWENNNIFDWRQNNIVIADQPTFVKYLIKV 81 (105)
T ss_dssp CCCSCCCSCCEEECSSTTCEEEECCCCCGGGTCSSSCEEEEEEEESSTTCCCEEEEECCTTCCEEEECSCCSSCEEEEEE
T ss_pred CCCCCCCcCeEEEEccCCeEEEEEeCCChhhcCceEEEEEEEeeeeccccceeEEEecCCCccEEEECCCCCCCEEEEEE
Confidence 3455689999999999999999999843 4556789999999987654 666666556678899999999999999999
Q ss_pred EEecCCCCCCCCCCC
Q psy7039 88 RAVNAAGPGEASKPT 102 (516)
Q Consensus 88 ~a~n~~g~~~~s~~~ 102 (516)
+|.|..|.+.++...
T Consensus 82 ~A~N~~G~gp~S~~~ 96 (105)
T d1cfba2 82 VAINDRGESNVAAEE 96 (105)
T ss_dssp EEEETTEECSSCCCC
T ss_pred EEEeCCcCCCCCCCc
Confidence 999999999876543
|
| >d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=99.22 E-value=1e-11 Score=93.84 Aligned_cols=85 Identities=24% Similarity=0.266 Sum_probs=67.5
Q ss_pred CCccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEeec
Q psy7039 113 APRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTT 192 (516)
Q Consensus 113 ~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~ 192 (516)
+|.|....+..+.+.+|+.+.|.|.+. |.|.+.+.|++++...... ..
T Consensus 4 ~P~i~~~~p~~~~~~~G~~v~l~C~~~--------------------------g~P~p~i~W~k~~~~~~~~------~~ 51 (91)
T d1cs6a3 4 APSIKAKFPADTYALTGQMVTLECFAF--------------------------GNPVPQIKWRKLDGSQTSK------WL 51 (91)
T ss_dssp EEEEEECCCSEEEEETTCCEEEECEEE--------------------------EESCCEEEEEECCSCCSCC------CS
T ss_pred CCeEEeeCCCcEEEecCCcEEEEEEEE--------------------------EccCCEEEEEecccccceE------ee
Confidence 556654556788999999999999999 9999999999976543321 12
Q ss_pred CCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEEee
Q psy7039 193 KSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVT 229 (516)
Q Consensus 193 ~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~~ 229 (516)
.....|.|.+++.+|+|.|+|.+.|..|.......+.
T Consensus 52 ~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~ 88 (91)
T d1cs6a3 52 SSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGRII 88 (91)
T ss_dssp BSSSEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEE
T ss_pred eeeeEEEeCCCCccCCEEEEEEEEECCCEEEEEEEEE
Confidence 2345899999999999999999999999877665443
|
| >d1n26a3 b.1.2.1 (A:196-299) Interleukin-6 receptor alpha chain, domains 2 and 3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Interleukin-6 receptor alpha chain, domains 2 and 3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.22 E-value=6.4e-11 Score=91.95 Aligned_cols=94 Identities=17% Similarity=0.289 Sum_probs=77.2
Q ss_pred CCCCCcceEEEeee--CCeeEEEecCCCC-CCCCceeceEEEEEeCCC-CeEEeEEeecCCcEEEeCCCcCCCeEEEEEE
Q psy7039 13 EPGKPTDLEATDWD--KDHVDLQWTPPIS-DGGSPITGYVVEMKDKTG-NWEKAVVVPAGETSCTVPGLIEGETYQFQVR 88 (516)
Q Consensus 13 ~p~~p~~l~~~~~~--~~~v~l~W~~p~~-~~~~~i~~Y~v~~~~~~~-~~~~~~~~~~~~~~~~i~~l~~~~~y~~~~~ 88 (516)
.|+||.+|.+..+. ++.+.|+|.+|.. +.+..+..|+|+|+..+. .|.... .....+.+.|.+|.+++.|.|+|+
T Consensus 1 kP~pP~~l~v~~~~~~~~~l~v~W~~P~~~~~~~~~~~y~v~~~~~~~~~~~~~~-~~~~~~~~~i~~L~p~t~Y~~rVr 79 (104)
T d1n26a3 1 QPDPPANITVTAVARNPRWLSVTWQDPHSWNSSFYRLRFELRYRAERSKTFTTWM-VKDLQHHCVIHDAWSGLRHVVQLR 79 (104)
T ss_dssp CCCCCEEEEEEECTTCTTCEEEEEECCTTCCCSSSCEEEEEEEEETTCSCCEEEE-CGGGCSEEEESSCCTTCCEEEEEE
T ss_pred CCcCCCCCEEEEEecCCCEEEEEEEeeeecCCCceeEEEEEEEeeCCCCceeeec-cccceEEEEECCCCCCCEEEEEEE
Confidence 59999999998764 4679999999853 456778999999998766 776654 446678999999999999999999
Q ss_pred EecCCCCCCCCCCCcceEe
Q psy7039 89 AVNAAGPGEASKPTAPIVA 107 (516)
Q Consensus 89 a~n~~g~~~~s~~~~~~~~ 107 (516)
|.|..|.+.+|..+..+..
T Consensus 80 a~n~~g~g~wSewS~~~~~ 98 (104)
T d1n26a3 80 AQEEFGQGEWSEWSPEAMG 98 (104)
T ss_dssp EEETTTBSCCCCCCCCEEE
T ss_pred EEeCCCccCCcCCcCCEEe
Confidence 9999999988876655543
|
| >d1qg3a1 b.1.2.1 (A:1126-1217) Integrin beta-4 subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Integrin beta-4 subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.21 E-value=3.6e-11 Score=91.10 Aligned_cols=84 Identities=23% Similarity=0.311 Sum_probs=70.2
Q ss_pred CCCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCCCeEEeEEeecCCcEEEeCCCcCCCeEEEEEEEecCC
Q psy7039 14 PGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVVVPAGETSCTVPGLIEGETYQFQVRAVNAA 93 (516)
Q Consensus 14 p~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~~~a~n~~ 93 (516)
.++|.+|++..+++++|.|+|.+|. +.+.+|.|+|...+..+............+.|.+|+++..|.|+++|.|..
T Consensus 2 l~aP~n~~~~~~s~~si~l~W~~p~----~~~~~Y~i~y~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~ 77 (92)
T d1qg3a1 2 LGAPQNPNAKAAGSRKIHFNWLPPS----GKPMGYRVKYWIQGDSESEAHLLDSKVPSVELTNLYPYCDYEMKVCAYGAQ 77 (92)
T ss_dssp CCCCEEEEEEECSTTCEEEEEECCS----SCCCEEEEEEEETTSCGGGCEEEEESSSEEEECSCCTTCEEEEEEEEECSS
T ss_pred CCcCCCCEEEEccCCEEEEEEEecC----CCccceEEeeeeccccccEEEEecCCccEEEECCCCCCcEEEEEEEEEeCC
Confidence 3789999999999999999999974 347899999988766333334455678899999999999999999999999
Q ss_pred CCCCCCCC
Q psy7039 94 GPGEASKP 101 (516)
Q Consensus 94 g~~~~s~~ 101 (516)
|.+.++..
T Consensus 78 G~g~~S~~ 85 (92)
T d1qg3a1 78 GEGPYSSL 85 (92)
T ss_dssp CBCCCCCC
T ss_pred cCcCCCCC
Confidence 99887653
|
| >d1fnfa3 b.1.2.1 (A:1327-1415) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin, different Fn3 modules species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.20 E-value=3.2e-11 Score=90.76 Aligned_cols=80 Identities=23% Similarity=0.399 Sum_probs=69.6
Q ss_pred CCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCC-CeEEeEEeecCCcEEEeCCCcCCCeEEEEEEEecCC
Q psy7039 15 GKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTG-NWEKAVVVPAGETSCTVPGLIEGETYQFQVRAVNAA 93 (516)
Q Consensus 15 ~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~-~~~~~~~~~~~~~~~~i~~l~~~~~y~~~~~a~n~~ 93 (516)
+||.+|++..++++++.|+|.+|. +.+.+|+|+|...+. .|........+.+++.|.+|.++..|.|++.|.|..
T Consensus 2 d~P~~l~v~~vt~~sv~l~W~~p~----~~~~~Y~i~~~~~~~~~~~~~~~v~~~~~~~~i~~L~p~t~Y~~~V~a~~~~ 77 (89)
T d1fnfa3 2 DSPTGIDFSDITANSFTVHWIAPR----ATITGYRIRHHPEHFSGRPREDRVPHSRNSITLTNLTPGTEYVVSIVALNGR 77 (89)
T ss_dssp CCCEEEEEESCCSSEEEEEEECCS----SCCSEEEEEEECSCCSSCCEEEEEETTCCEEEEESCCTTCEEEEEEEEEETT
T ss_pred ccCcCCEEEEecCCEEEEEEEeCC----CEEeeEEEEEEECCCCCceEEEEECCCccEEEECCCcccCEEEEEEEEEcCC
Confidence 589999999999999999999974 458899999998665 666666677889999999999999999999999988
Q ss_pred CCCCC
Q psy7039 94 GPGEA 98 (516)
Q Consensus 94 g~~~~ 98 (516)
|.+.+
T Consensus 78 g~s~p 82 (89)
T d1fnfa3 78 EESPL 82 (89)
T ss_dssp EECCC
T ss_pred cCcCC
Confidence 87654
|
| >d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=99.20 E-value=2.8e-11 Score=91.40 Aligned_cols=80 Identities=18% Similarity=0.260 Sum_probs=66.0
Q ss_pred ccccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeE
Q psy7039 361 SIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSA 440 (516)
Q Consensus 361 ~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~ 440 (516)
.+....+.+|+.+.|.|.+.|.|.|.+.|++++...... .......|.|.++.. .|.|.|+|.|.|..|..+.
T Consensus 11 ~p~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~~~~~~~~------~~~~~~~L~I~~v~~-~D~G~Y~C~a~N~~G~~~~ 83 (91)
T d1cs6a3 11 FPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSK------WLSSEPLLHIQNVDF-EDEGTYECEAENIKGRDTY 83 (91)
T ss_dssp CCSEEEEETTCCEEEECEEEEESCCEEEEEECCSCCSCC------CSBSSSEEEECSCCG-GGCEEEEEEEEETTEEEEE
T ss_pred CCCcEEEecCCcEEEEEEEEEccCCEEEEEecccccceE------eeeeeeEEEeCCCCc-cCCEEEEEEEEECCCEEEE
Confidence 346788999999999999999999999999977543221 112234699999999 9999999999999999888
Q ss_pred EEEEEEe
Q psy7039 441 SCKVYVV 447 (516)
Q Consensus 441 s~~l~v~ 447 (516)
++.|.|.
T Consensus 84 ~~~l~V~ 90 (91)
T d1cs6a3 84 QGRIIIH 90 (91)
T ss_dssp EEEEEEE
T ss_pred EEEEEEE
Confidence 8888875
|
| >d1ueya_ b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: KIAA0343 protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.20 E-value=8.1e-11 Score=95.06 Aligned_cols=98 Identities=31% Similarity=0.435 Sum_probs=79.5
Q ss_pred CCCCCCCCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCC--CeEEeEEeecCCcEEEeCCCcCCCeEEEE
Q psy7039 9 NPFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTG--NWEKAVVVPAGETSCTVPGLIEGETYQFQ 86 (516)
Q Consensus 9 ~~~~~p~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~--~~~~~~~~~~~~~~~~i~~l~~~~~y~~~ 86 (516)
...++|++|.+|++..+++++|.|+|.+|. +++..+..|.++|+..+. .+..........+.+.|.+|+++..|.|+
T Consensus 12 ~v~d~P~~P~~~~v~~~~~~sv~l~W~~p~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~fr 90 (127)
T d1ueya_ 12 PVYDVPNPPFDLELTDQLDKSVQLSWTPGD-DNNSPITKFIIEYEDAMHKPGLWHHQTEVSGTQTTAQLNLSPYVNYSFR 90 (127)
T ss_dssp CCCCSCCCCEEEEEECCSSSCEEEEEECCC-CCSSCEEEEEEEEEBTTTCTTCEEEEEEEESSCCEEEECCCTTCEECCE
T ss_pred cccccCcCCCCcEEEEecCCeEEEEEeCCc-ccccceEeeeeeeccccccceeEEEEeecCCceEEEECCCccCCEEEEE
Confidence 345789999999999999999999999874 666789999999987544 22223333457888999999999999999
Q ss_pred EEEecCCCCCCCCCCCcceEe
Q psy7039 87 VRAVNAAGPGEASKPTAPIVA 107 (516)
Q Consensus 87 ~~a~n~~g~~~~s~~~~~~~~ 107 (516)
++|.|..|.+.++.....+..
T Consensus 91 V~A~n~~G~s~~S~~s~~~~t 111 (127)
T d1ueya_ 91 VMAVNSIGKSLPSEASEQYLT 111 (127)
T ss_dssp EEEEESSCBCCCCSCCCCEEC
T ss_pred EEEEcCCcCcCCcCCcccEEc
Confidence 999999999988776655544
|
| >d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Hemolin species: Moth (Hyalophora cecropia) [TaxId: 7123]
Probab=99.20 E-value=4.1e-11 Score=91.67 Aligned_cols=85 Identities=27% Similarity=0.329 Sum_probs=69.6
Q ss_pred cccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCc--eEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCce-
Q psy7039 362 IRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGR--IKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSD- 438 (516)
Q Consensus 362 ~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~--~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~- 438 (516)
..+..+..|+.+.|.|.+.|.|.+.+.|++++..+..... +.........+|.|.++.. .|+|.|+|.|.|..|..
T Consensus 10 ~~~~~~~~G~~v~l~C~~~g~P~~~v~W~k~g~~i~~~~~~~~~~~~~~~~~~L~I~~~~~-~D~G~Y~C~a~N~~G~~~ 88 (97)
T d1biha3 10 SKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLP-EDEGVYTCEVDNGVGKPQ 88 (97)
T ss_dssp CCSEEEETTSCEEEEEEEECSSCCCCEEEETTEECCCCTTSSEESCSSSTTSEEEESSCCG-GGCEEEEEEECCSSSSCE
T ss_pred CCCEEEecCCeEEEEEEEEEecCCEEEEEEeeeeccccceeeeeeeeecCCCEEEEEeccc-cccEEEEEEEEECCCcEE
Confidence 3568899999999999999999999999999998865443 3323334446899999999 99999999999999985
Q ss_pred eEEEEEEEe
Q psy7039 439 SASCKVYVV 447 (516)
Q Consensus 439 s~s~~l~v~ 447 (516)
+.++.|+|.
T Consensus 89 s~s~~L~Vl 97 (97)
T d1biha3 89 KHSLKLTVV 97 (97)
T ss_dssp EEEEEEEEE
T ss_pred EEEEEEEEC
Confidence 557778773
|
| >d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Neural cell adhesion molecule (NCAM) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.18 E-value=2.1e-11 Score=94.00 Aligned_cols=91 Identities=19% Similarity=0.287 Sum_probs=69.2
Q ss_pred CCcccc-CcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCc--eEE
Q psy7039 113 APRIDR-STLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGR--ADV 189 (516)
Q Consensus 113 ~p~~~~-~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~--~~~ 189 (516)
||.|.. .....+.+..|+.+.|.|.+. |.|.+.+.|++++..+..... ...
T Consensus 3 PP~i~~~~~~~~~t~~~G~~v~l~C~~~--------------------------g~P~p~i~W~~~g~~i~~~~~~~~~~ 56 (100)
T d1qz1a3 3 PPTVQARQSIVNATANLGQSVTLVCDAD--------------------------GFPEPTMSWTKDGEPIENEEEDDEKH 56 (100)
T ss_dssp EEEEEESCSEEEEETTSCCCEEEEEEEE--------------------------EESCCEEEEEETTEECCCC--CCSSE
T ss_pred CCEEEeCCCceeEEEcCCCCEEEEEEEE--------------------------EecCCEEEEEeCCcccccccccceeE
Confidence 455541 223345667899999999999 999999999999998865432 222
Q ss_pred eecCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEEee
Q psy7039 190 QTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVT 229 (516)
Q Consensus 190 ~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~~ 229 (516)
......+.|.|.+++.+|+|.|+|.+.|..|.......+.
T Consensus 57 ~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~ 96 (100)
T d1qz1a3 57 IFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLK 96 (100)
T ss_dssp EECTTSCEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEE
T ss_pred EeecCceEEEeCCCCcccCEEEEEEEEECCCEEEEEEEEE
Confidence 3345567999999999999999999999999877665543
|
| >d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: NT3 binding domain of trkC receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.18 E-value=5.6e-11 Score=92.41 Aligned_cols=83 Identities=22% Similarity=0.341 Sum_probs=69.1
Q ss_pred CCeEEEEEEEeeecCCceEEEECCeecCCCCceEEEE--cC--CeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEEE
Q psy7039 370 GEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFET--SE--NQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVY 445 (516)
Q Consensus 370 g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~--~~--~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~ 445 (516)
+....+.|.+.|.|.|.+.|++++..+..+.++.... .. ..+.|.|.++.. .|+|.|+|.|.|..|..+.++.|.
T Consensus 17 ~~~~~i~~~v~G~P~P~v~W~~n~~~i~~~~~~~~~~~~~~~~~~~~L~i~~~~~-~D~G~Y~C~a~N~~G~~~~~~~v~ 95 (105)
T d1wwca_ 17 RLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTH-YNNGNYTLIAKNPLGTANQTINGH 95 (105)
T ss_dssp CCEEEEEEEEECSSCCEEEEEETTEECCCSSSEEEEEEECSSEEEEEEEEESCCG-GGCEEEEEEEEETTEEEEEEEEEC
T ss_pred EEEEEEEEEEEEeCCCeEEEEeCccccCCCcceeeeEEeecccceEEEEEeeccc-ccceEEEEEEEcCCCEEEEEEEEE
Confidence 4455688899999999999999999987766554432 22 235699999999 999999999999999999999999
Q ss_pred EecCCCCC
Q psy7039 446 VVDKPSPP 453 (516)
Q Consensus 446 v~~~p~~P 453 (516)
|..+|.|+
T Consensus 96 V~~~P~P~ 103 (105)
T d1wwca_ 96 FLKEPFPV 103 (105)
T ss_dssp CSCCCCCS
T ss_pred EEeCCCCC
Confidence 99888765
|
| >d1wfua_ b.1.2.1 (A:) Fibronectin type 3 and ankyrin repeat domains 1 protein, FANK1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin type 3 and ankyrin repeat domains 1 protein, FANK1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.18 E-value=3.3e-11 Score=96.30 Aligned_cols=90 Identities=14% Similarity=0.141 Sum_probs=72.7
Q ss_pred CCCCCCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEe----CCC-CeEEeEEeecCCcEEEeCCCcCCCeEEE
Q psy7039 11 FDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKD----KTG-NWEKAVVVPAGETSCTVPGLIEGETYQF 85 (516)
Q Consensus 11 ~~~p~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~----~~~-~~~~~~~~~~~~~~~~i~~l~~~~~y~~ 85 (516)
..+|++|.++.+..+++++|.|+|.+|..+++..|.+|.|+|+. ... .|..+.. ...++++|.+|++++.|.|
T Consensus 13 ~~pp~~P~~p~v~~vt~~sv~l~W~~P~~~~g~~i~~y~i~y~~~~~~~~~~~~~~~~~--~~~~~~~v~~L~p~t~Y~f 90 (120)
T d1wfua_ 13 VVPLSKPHPPVVGKVTHHSIELYWDLEQKEKRQGPQEQWLRFSIEEEDPKMHSYGVIYT--GYATRHVVEGLEPRTLYKF 90 (120)
T ss_dssp CCCCCCCCCCBCCCEETTEEEEECTTTSCSCCCSCGGGCCEEEEEEECTTTCCEEEEEE--ESCSEEEEESCCTTCEEEE
T ss_pred ccCCCcCCCCEEeEecCCEEEEEEECCcccCcccccceeeeeeeecccccccceeeecc--ccccEEeCCCCCCCcEeeE
Confidence 35678888888888999999999999987888888888887753 222 5655543 4678999999999999999
Q ss_pred EEEEecCCCCCCCCCCC
Q psy7039 86 QVRAVNAAGPGEASKPT 102 (516)
Q Consensus 86 ~~~a~n~~g~~~~s~~~ 102 (516)
+|+|.|..|.+.++...
T Consensus 91 rV~A~n~~G~s~~S~~~ 107 (120)
T d1wfua_ 91 RLKVTSPSGEYEYSPVV 107 (120)
T ss_dssp EEEEECSSSCEEECCCE
T ss_pred EEEEEeCCcEeCCCCCE
Confidence 99999999988776543
|
| >d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cardiac myosin binding protein C, different domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.18 E-value=4.5e-11 Score=96.95 Aligned_cols=86 Identities=22% Similarity=0.345 Sum_probs=70.9
Q ss_pred CcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeecc---------------
Q psy7039 119 STLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQI--------------- 183 (516)
Q Consensus 119 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~--------------- 183 (516)
..+..+.+.+|+.++|.|.+. |.|.+.+.|++++..+..
T Consensus 14 ~~~~~v~v~~G~~v~L~C~v~--------------------------G~P~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~ 67 (130)
T d1gxea_ 14 RIPDTIVVVAGNKLRLDVPIS--------------------------GDPAPTVIWQKAITQGNKAPARPAPDAPEDTGD 67 (130)
T ss_dssp CCCCEEEESSSSCCCCEEECC--------------------------SBSCCEEEEEEECCCSCSSCCCCCCCCCCCCCC
T ss_pred CCCCCEEEEcCCeEEEEEEEE--------------------------EecCCeEEEeeCCeEccCCccceeeeccccccc
Confidence 456688999999999999999 999999999997655432
Q ss_pred --------------CCceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEEeec
Q psy7039 184 --------------GGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVTG 230 (516)
Q Consensus 184 --------------~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~~~ 230 (516)
..++.+........|.|.++..+|+|.|+|.+.|..|.....+.+.+
T Consensus 68 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 128 (130)
T d1gxea_ 68 SDEWVFDKKLLCETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVKV 128 (130)
T ss_dssp SSCCCCSCCCCCSCSSSCEEEEETTEEEEECSCCCTTTCEEEEEEEECSSCEEEEEEEEEE
T ss_pred ceeeecCCceeeccCceEEEEECCCEEEEEECcCChhcCEEEEEEEEECCCEEEEEEEEEE
Confidence 12455555667789999999999999999999999999877766544
|
| >d1tena_ b.1.2.1 (A:) Tenascin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Tenascin species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.18 E-value=5.8e-11 Score=89.49 Aligned_cols=82 Identities=13% Similarity=0.233 Sum_probs=70.2
Q ss_pred CCCCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCC-CeEEeEEeecCCcEEEeCCCcCCCeEEEEEEEec
Q psy7039 13 EPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTG-NWEKAVVVPAGETSCTVPGLIEGETYQFQVRAVN 91 (516)
Q Consensus 13 ~p~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~-~~~~~~~~~~~~~~~~i~~l~~~~~y~~~~~a~n 91 (516)
.++||.+|++..++++++.|+|.+|. +.+.+|+|.|...++ .+........+.++++|.+|.|++.|.|+++|.|
T Consensus 1 ~ld~P~~l~v~~~s~~s~~l~W~~p~----~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~~ 76 (90)
T d1tena_ 1 RLDAPSQIEVKDVTDTTALITWFKPL----AEIDGIELTYGIKDVPGDRTTIDLTEDENQYSIGNLKPDTEYEVSLISRR 76 (90)
T ss_dssp -CCCCEEEEEESCCSSCEEEEEECCS----SCCSEEEEEEEETTCTTCCEEEEEETTCCEEEECSCCTTCEEEEEEEEEE
T ss_pred CCCCCCCcEEEEecCCEEEEEEEeCc----eEeccEEEEEEEcCCCceeEEEEecCCcceeeEeeecCCCEEEEEEEEEe
Confidence 36799999999999999999999874 458899999998766 5555556677899999999999999999999999
Q ss_pred CCCCCCC
Q psy7039 92 AAGPGEA 98 (516)
Q Consensus 92 ~~g~~~~ 98 (516)
..|.+.+
T Consensus 77 ~~g~s~~ 83 (90)
T d1tena_ 77 GDMSSNP 83 (90)
T ss_dssp TTEECCC
T ss_pred CCCEeCC
Confidence 8887764
|
| >d1vcaa2 b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Vascular cell adhesion molecule-1 (VCAM-1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.18 E-value=7.5e-11 Score=88.79 Aligned_cols=82 Identities=13% Similarity=0.041 Sum_probs=66.0
Q ss_pred cccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEeecCCeeEEE
Q psy7039 120 TLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTTKSETVLD 199 (516)
Q Consensus 120 ~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~ 199 (516)
+...+.+..|+.+.|.|.+. |.|.+.+.|++++..+.... .......+.|.
T Consensus 7 P~~~~~~~~G~~v~l~C~~~--------------------------g~p~p~i~W~~~~~~~~~~~---~~~~~~~~~L~ 57 (90)
T d1vcaa2 7 PESRYLAQIGDSVSLTCSTT--------------------------GCESPFFSWRTQIDSPLNGK---VTNEGTTSTLT 57 (90)
T ss_dssp SSSEEEEETTSCEEEEEEEE--------------------------SCSSCEEEEEETTCCCCSSE---EEEETTEEEEE
T ss_pred CCCcEEEECCCEEEEEEecc--------------------------CCCCceEEEEecCccceeee---eeeecCCcEEE
Confidence 34456778999999999999 99999999999776554322 22345678999
Q ss_pred eccCCCCCCeeEEEEEEcCCCceEEEEEeec
Q psy7039 200 IPFCSRSDTGHYSLTLENNLGTATASAHVTG 230 (516)
Q Consensus 200 i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~~~ 230 (516)
|.+++.+|+|.|+|.+.|..|.......+.+
T Consensus 58 I~~v~~~d~G~Y~C~a~N~~g~~~~~~~v~V 88 (90)
T d1vcaa2 58 MNPVSFGNEHSYLCTATCESRKLEKGIQVEI 88 (90)
T ss_dssp ESSCCGGGCSEEEEEEEETTEEEEEEEEEEE
T ss_pred EecccccccceEEEEEEeCCCEEEEEEEEEE
Confidence 9999999999999999999998777665543
|
| >d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Ligand binding domain of trkB receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.18 E-value=4.5e-11 Score=92.47 Aligned_cols=82 Identities=21% Similarity=0.351 Sum_probs=69.0
Q ss_pred cCCeEEEEEEEeeecCCceEEEECCeecCCCCceEEEEc-----CCeEEEEEcCceecCCceEEEEEEEcCCCceeEEEE
Q psy7039 369 AGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETS-----ENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCK 443 (516)
Q Consensus 369 ~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~-----~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~ 443 (516)
.++...+.|.+.|.|.|.|.|++++..+..+.+...... ...+.|.|.++.. .|.|.|+|.|.|..|..+.++.
T Consensus 15 ~~~~~~i~~~v~G~P~P~i~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~-~D~G~Y~C~a~N~~G~~~~~~~ 93 (103)
T d1wwbx_ 15 SDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTH-MNNGDYTLIAKNEYGKDEKQIS 93 (103)
T ss_dssp CCCEEEEEEEEECSSCCEEEEEETTEEECCCSSEEEEEEEECSSEEEEEEEEESCCG-GGCEEEEEEEECSSCEEEEEEE
T ss_pred cceeEEEEEEEEEeCCCEEEEEECCEEeeeeeeeeeeecccccccceEEEEECCCCH-HhCceEEEEEeccCCEEEEEEE
Confidence 566778999999999999999999999977665544321 1235799999999 9999999999999999999999
Q ss_pred EEEecCCC
Q psy7039 444 VYVVDKPS 451 (516)
Q Consensus 444 l~v~~~p~ 451 (516)
|.|..+|.
T Consensus 94 v~V~~~P~ 101 (103)
T d1wwbx_ 94 AHFMGWPG 101 (103)
T ss_dssp ECCSCCCC
T ss_pred EEEEeCCC
Confidence 99987765
|
| >d1vcaa2 b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Vascular cell adhesion molecule-1 (VCAM-1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.17 E-value=1.1e-10 Score=87.91 Aligned_cols=80 Identities=11% Similarity=0.102 Sum_probs=67.4
Q ss_pred cEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEEEE
Q psy7039 364 DMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCK 443 (516)
Q Consensus 364 ~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~ 443 (516)
...+..|+.+.|.|.+.|.|.|.+.|.+++..+.... .........|.|.++.. .|.|.|.|.|.|..|..+.++.
T Consensus 10 ~~~~~~G~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~---~~~~~~~~~L~I~~v~~-~d~G~Y~C~a~N~~g~~~~~~~ 85 (90)
T d1vcaa2 10 RYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNGK---VTNEGTTSTLTMNPVSF-GNEHSYLCTATCESRKLEKGIQ 85 (90)
T ss_dssp EEEEETTSCEEEEEEEESCSSCEEEEEETTCCCCSSE---EEEETTEEEEEESSCCG-GGCSEEEEEEEETTEEEEEEEE
T ss_pred cEEEECCCEEEEEEeccCCCCceEEEEecCccceeee---eeeecCCcEEEEecccc-cccceEEEEEEeCCCEEEEEEE
Confidence 4566799999999999999999999999886653322 23345667899999999 9999999999999999999988
Q ss_pred EEEe
Q psy7039 444 VYVV 447 (516)
Q Consensus 444 l~v~ 447 (516)
|.|.
T Consensus 86 v~V~ 89 (90)
T d1vcaa2 86 VEIY 89 (90)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8875
|
| >d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fibroblast growth factor receptor, FGFR species: Human (Homo sapiens), FGFR2a [TaxId: 9606]
Probab=99.17 E-value=2.2e-11 Score=93.20 Aligned_cols=81 Identities=20% Similarity=0.292 Sum_probs=66.8
Q ss_pred ceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCceE-EeecCCeeEEEec
Q psy7039 123 DVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRAD-VQTTKSETVLDIP 201 (516)
Q Consensus 123 ~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~-~~~~~~~~~l~i~ 201 (516)
...+.+|+.+.|.|.+. |.|.+.+.|++++..+....+.. ........+|.|.
T Consensus 14 ~~~v~~G~~v~l~C~~~--------------------------g~P~p~i~W~kng~~l~~~~~~~~~~~~~~~~~L~I~ 67 (97)
T d3dara1 14 LHAVPAANTVKFRCPAG--------------------------GNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIME 67 (97)
T ss_dssp EEEECTTCCEEEECCEE--------------------------EESCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEEC
T ss_pred cEEECCCCcEEEEEEEe--------------------------EECCCEEEEEECCEeccccCceeeEEEcCCcEEEEEC
Confidence 35678999999999999 99999999999999997655432 2223455799999
Q ss_pred cCCCCCCeeEEEEEEcCCCceEEEEEee
Q psy7039 202 FCSRSDTGHYSLTLENNLGTATASAHVT 229 (516)
Q Consensus 202 ~~~~~d~g~Y~c~~~~~~g~~~~~~~~~ 229 (516)
+++.+|+|.|+|.+.|..|....+..+.
T Consensus 68 ~v~~~D~G~Y~C~a~N~~G~~~~~~~l~ 95 (97)
T d3dara1 68 SVVPSDKGNYTCVVENEYGSINHTYHLD 95 (97)
T ss_dssp SCCGGGCEEEEEEEEETTEEEEEEEEEE
T ss_pred CCCcccCEEEEEEEEECCCEEEEEEEEE
Confidence 9999999999999999999877665543
|
| >d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Neural cell adhesion molecule (NCAM) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.16 E-value=3.4e-11 Score=91.13 Aligned_cols=80 Identities=13% Similarity=0.055 Sum_probs=65.6
Q ss_pred CcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEeecCCeeEE
Q psy7039 119 STLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTTKSETVL 198 (516)
Q Consensus 119 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l 198 (516)
..|....+.+|+.+.|.|.+. |.|.+.+.|++++..+....+..+...+ .++|
T Consensus 6 ~~P~~~~v~~G~~~~l~C~v~--------------------------g~p~p~v~W~~~~~~i~~~~~~~~~~~~-~~~L 58 (92)
T d1epfa2 6 NAPTPQEFKEGEDAVIVCDVV--------------------------SSLPPTIIWKHKGRDVILKKDVRFIVLS-NNYL 58 (92)
T ss_dssp ECCSSEECCTTSCEEECCEEE--------------------------CSSCCEEEEEETTEEGGGGCCTTEEECT-TSCE
T ss_pred EcCCCEEEeCCCcEEEEEEEe--------------------------ecCCCeEEEEEcCcccccccceeeeeee-eeeE
Confidence 456678899999999999999 9999999999999988876554443332 2469
Q ss_pred EeccCCCCCCeeEEEEEEcCCCceEEE
Q psy7039 199 DIPFCSRSDTGHYSLTLENNLGTATAS 225 (516)
Q Consensus 199 ~i~~~~~~d~g~Y~c~~~~~~g~~~~~ 225 (516)
.|.+++..|+|.|+|.+.|..+.....
T Consensus 59 ~I~~~~~~D~G~Y~C~a~n~~~~~~~~ 85 (92)
T d1epfa2 59 QIRGIKKTDEGTYRCEGRILARGEINF 85 (92)
T ss_dssp EETTCCGGGCEEEEEEEEEGGGTEEEE
T ss_pred EECCCCHHhCEEEEEEEEECcCCEEEE
Confidence 999999999999999999977665443
|
| >d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Neural cell adhesion molecule (NCAM) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.16 E-value=2e-11 Score=92.38 Aligned_cols=85 Identities=20% Similarity=0.259 Sum_probs=69.2
Q ss_pred cccccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCcee
Q psy7039 360 LSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDS 439 (516)
Q Consensus 360 ~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s 439 (516)
..+.+..+.+|+.+.|.|.+.|.|.|.+.|++++..+....+.......+ ..|.|.++.. .|+|.|+|.|.|..|...
T Consensus 6 ~~P~~~~v~~G~~~~l~C~v~g~p~p~v~W~~~~~~i~~~~~~~~~~~~~-~~L~I~~~~~-~D~G~Y~C~a~n~~~~~~ 83 (92)
T d1epfa2 6 NAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSN-NYLQIRGIKK-TDEGTYRCEGRILARGEI 83 (92)
T ss_dssp ECCSSEECCTTSCEEECCEEECSSCCEEEEEETTEEGGGGCCTTEEECTT-SCEEETTCCG-GGCEEEEEEEEEGGGTEE
T ss_pred EcCCCEEEeCCCcEEEEEEEeecCCCeEEEEEcCcccccccceeeeeeee-eeEEECCCCH-HhCEEEEEEEEECcCCEE
Confidence 45677899999999999999999999999999998886555443333333 3599999999 999999999999888776
Q ss_pred EEEEEEE
Q psy7039 440 ASCKVYV 446 (516)
Q Consensus 440 ~s~~l~v 446 (516)
....+.|
T Consensus 84 ~~~~i~V 90 (92)
T d1epfa2 84 NFKDIQV 90 (92)
T ss_dssp EEEEEEE
T ss_pred EEEEEEE
Confidence 6666655
|
| >d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cervical EMMPRIN species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.16 E-value=1e-10 Score=90.22 Aligned_cols=89 Identities=19% Similarity=0.264 Sum_probs=71.4
Q ss_pred CCccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCce-eeEEeeCCeeec------cCC
Q psy7039 113 APRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFL-NHGWSINGQVCQ------IGG 185 (516)
Q Consensus 113 ~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~i~W~~~~~~~~------~~~ 185 (516)
||.|. ..+....+.+|+.+.|.|.+. |.|.+ .+.|++++.... ...
T Consensus 2 PP~i~-~~~~~~~v~~G~~v~l~C~v~--------------------------g~P~p~~i~W~k~~~~~~~~~~~~~~~ 54 (101)
T d3b5ha1 2 PPRVK-AVKSSEHINEGETAMLVCKSE--------------------------SVPPVTDWAWYKITDSEDKALMNGSES 54 (101)
T ss_dssp SCCCE-ESCSEEEECTTSCEEEEEECC--------------------------CSSCCCEEEEEECCSSSCEECCTTGGG
T ss_pred CceEE-EcCCcEEECcCCeEEEEEEEE--------------------------ecCCeeEEEEEeccceeeeecccCCCc
Confidence 67776 566778899999999999999 88877 799998653221 235
Q ss_pred ceEEeecCCeeEEEeccCC-CCCCeeEEEEEEcCCCceEEEEEe
Q psy7039 186 RADVQTTKSETVLDIPFCS-RSDTGHYSLTLENNLGTATASAHV 228 (516)
Q Consensus 186 ~~~~~~~~~~~~l~i~~~~-~~d~g~Y~c~~~~~~g~~~~~~~~ 228 (516)
++.+...+..+.|.|.++. ..|+|.|.|.|.|..|.......+
T Consensus 55 ~~~~~~~~~~~~L~I~~v~~~~D~G~Y~C~A~N~~G~~~~~~~L 98 (101)
T d3b5ha1 55 RFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITL 98 (101)
T ss_dssp TEEEEEETTEEEEEECSCCTTTSSEEEEEEEEETTEEEEEEEEE
T ss_pred eEEEEeCCCEEEEEEeccccccCCEEEEEEEEECCCEEEEEEEE
Confidence 6777777888999999998 579999999999999988766544
|
| >d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.15 E-value=6.9e-11 Score=89.26 Aligned_cols=77 Identities=18% Similarity=0.204 Sum_probs=65.7
Q ss_pred cccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEeec--CCeeE
Q psy7039 120 TLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTT--KSETV 197 (516)
Q Consensus 120 ~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~--~~~~~ 197 (516)
.|.++.+.+|+++.|.|.+. +.|.+.+.|++++..+....+..+... .....
T Consensus 2 ~P~~~~v~~G~~~~l~C~v~--------------------------g~p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~ 55 (91)
T d1rhfa1 2 APVKLTVSQGQPVKLNCSVE--------------------------GMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGF 55 (91)
T ss_dssp CCEEEEEETTCCEEEEEEEE--------------------------SCSSCCEEEEETTEECCSSEEEEEEEETTEEEEE
T ss_pred cCeeEEEcCCCeEEEEEEEE--------------------------ecCCceEEEEEeecccccceeeeeeecccCceee
Confidence 35678899999999999999 999999999999999887766555433 33468
Q ss_pred EEeccCCCCCCeeEEEEEEcCCCce
Q psy7039 198 LDIPFCSRSDTGHYSLTLENNLGTA 222 (516)
Q Consensus 198 l~i~~~~~~d~g~Y~c~~~~~~g~~ 222 (516)
|.|.+++.+|+|.|+|.+.|..|..
T Consensus 56 L~I~~~~~~D~G~Y~C~a~N~~G~~ 80 (91)
T d1rhfa1 56 LSLKSVERSDAGRYWCQVEDGGETE 80 (91)
T ss_dssp EEESSCCGGGCEEEEEEESSCTTCE
T ss_pred EEECCCCcccCEEEEEEEEECCCCE
Confidence 9999999999999999999988864
|
| >d2djsa1 b.1.2.1 (A:8-102) Ephrin type-B receptor 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Ephrin type-B receptor 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.15 E-value=6.1e-11 Score=90.37 Aligned_cols=87 Identities=22% Similarity=0.356 Sum_probs=70.3
Q ss_pred CCCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCC-CeEEeEEeecCCcEEEeCCCcCCCeEEEEEEEecC
Q psy7039 14 PGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTG-NWEKAVVVPAGETSCTVPGLIEGETYQFQVRAVNA 92 (516)
Q Consensus 14 p~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~-~~~~~~~~~~~~~~~~i~~l~~~~~y~~~~~a~n~ 92 (516)
|++|..+++..++.++|.|+|.+|. +.++.|.+|.|+++..+. .|... ......+.++|.+|.++..|.|+|+|.|.
T Consensus 1 P~~~~~l~~~~~t~~si~l~W~~p~-~~~g~i~~Y~v~~~~~~~~~~~~~-~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~ 78 (95)
T d2djsa1 1 PSTVPIMHQVSATMRSITLSWPQPE-QPNGIILDYEIRYYEKEHNEFNSS-MARSQTNTARIDGLRPGMVYVVQVRARTV 78 (95)
T ss_dssp CCCCSCCEEEEECSSEEEEECCCCS-CCSSCEEEEEEEEEETTSCSTTCE-EEEESSSEEEEESCCTTCEEEEEEEEEES
T ss_pred CCCCCccEEEeecCCEEEEEEEECC-CCCcceEEeeeeeeeeccCcceeE-eecCCccEEEEeecCCccEEEEEEEEEcC
Confidence 6677789999999999999999986 444579999999998665 33222 22346889999999999999999999999
Q ss_pred CCCCCCCCCC
Q psy7039 93 AGPGEASKPT 102 (516)
Q Consensus 93 ~g~~~~s~~~ 102 (516)
.|.+.++...
T Consensus 79 ~G~g~~S~~~ 88 (95)
T d2djsa1 79 AGYGKFSGKM 88 (95)
T ss_dssp SCEEEECCCE
T ss_pred CCCCCCCCCE
Confidence 9988765443
|
| >d1x5ka1 b.1.2.1 (A:8-118) Neogenin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Neogenin species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.15 E-value=2.1e-10 Score=90.05 Aligned_cols=94 Identities=21% Similarity=0.377 Sum_probs=73.9
Q ss_pred eccCCCCCCC-CCcceEEEe--eeCCeeEEEecCCCCCCCCceeceEEEEEeCCC----CeEEeEEeecCCcEEEeCCCc
Q psy7039 6 LIKNPFDEPG-KPTDLEATD--WDKDHVDLQWTPPISDGGSPITGYVVEMKDKTG----NWEKAVVVPAGETSCTVPGLI 78 (516)
Q Consensus 6 ~~~~~~~~p~-~p~~l~~~~--~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~----~~~~~~~~~~~~~~~~i~~l~ 78 (516)
..++.++.|. ||.++++.. .++.+|.|+|.+|. +.+++|.+|.++|..... .|.. .......+++.|.+|.
T Consensus 3 ~~~T~~~~P~~pP~~~~v~~~~~~~~sv~v~W~~P~-~~~g~i~~Y~i~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~L~ 80 (111)
T d1x5ka1 3 HGTTFELVPTSPPKDVTVVSKEGKPKTIIVNWQPPS-EANGKITGYIIYYSTDVNAEIHDWVI-EPVVGNRLTHQIQELT 80 (111)
T ss_dssp SSCSCCCCCCSCCEEEEEEECSSCTTCEEEEEECCS-CCSSCCCEEEEEEESCSSSCTTTSEE-EEESTTCSEEEECSCC
T ss_pred ceEeCCCCCCCCCCCcEEEEecCCCCEEEEEEEccc-cCCCceeeeEEeeeecCCCCcceeEE-EEeCCCeeEEEECCCC
Confidence 4566777774 899998765 45678999999986 445689999999987544 3333 3345677899999999
Q ss_pred CCCeEEEEEEEecCCCCCCCCCC
Q psy7039 79 EGETYQFQVRAVNAAGPGEASKP 101 (516)
Q Consensus 79 ~~~~y~~~~~a~n~~g~~~~s~~ 101 (516)
++..|.|+|+|.|..|.+.+|..
T Consensus 81 p~t~Y~~~V~A~n~~G~g~~S~~ 103 (111)
T d1x5ka1 81 LDTPYYFKIQARNSKGMGPMSEA 103 (111)
T ss_dssp SSSEEEEEEEEECSSCBCCCCCC
T ss_pred CCCEEEEEEEEEcCCCCcCCCCC
Confidence 99999999999999998887653
|
| >d1fnfa2 b.1.2.1 (A:1236-1326) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin, different Fn3 modules species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.14 E-value=1.1e-10 Score=88.20 Aligned_cols=80 Identities=20% Similarity=0.397 Sum_probs=67.8
Q ss_pred CCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCC-CeEEeEEeecCCcEEEeCCCcCCCeEEEEEEEecCCC
Q psy7039 16 KPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTG-NWEKAVVVPAGETSCTVPGLIEGETYQFQVRAVNAAG 94 (516)
Q Consensus 16 ~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~-~~~~~~~~~~~~~~~~i~~l~~~~~y~~~~~a~n~~g 94 (516)
||.+|++..++++++.|+|.+|. ++.+.+|.|+|+..++ .+..........+++.|.+|++++.|.|+|+|.+..|
T Consensus 3 pP~~l~~~~~~~~sv~l~W~~p~---~~~~~~y~v~y~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~~~~g 79 (91)
T d1fnfa2 3 PPTDLRFTNIGPDTMRVTWAPPP---SIDLTNFLVRYSPVKNEEDVAELSISPSDNAVVLTNLLPGTEYVVSVSSVYEQH 79 (91)
T ss_dssp CCEEEEEESCCSSCEEEEEECCT---TCCCSEEEEEEEETTCTTCCEEEEECTTCCEEEECSCCTTCEEEEEEEEEETTE
T ss_pred cCCceEEEEeCCCEEEEEEEecC---CCCcceeEEEEEECCCCccEEEEEeCCCceEEEEeceeCCCEEEEEEEEEcCCC
Confidence 79999999999999999999863 2458899999998666 4555556667889999999999999999999999888
Q ss_pred CCCC
Q psy7039 95 PGEA 98 (516)
Q Consensus 95 ~~~~ 98 (516)
.+.+
T Consensus 80 ~S~p 83 (91)
T d1fnfa2 80 ESTP 83 (91)
T ss_dssp ECCC
T ss_pred CCCC
Confidence 7654
|
| >d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Perlecan Ig3 domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.14 E-value=8.6e-11 Score=88.29 Aligned_cols=80 Identities=16% Similarity=0.159 Sum_probs=64.2
Q ss_pred CcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEeecCCeeEE
Q psy7039 119 STLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTTKSETVL 198 (516)
Q Consensus 119 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l 198 (516)
..+....+.+|+++.|.|.+.+ +.|.+.+.|++++..+...... . ....|
T Consensus 7 ~~p~~~~v~~G~~~~l~C~~~~-------------------------~~p~~~v~W~k~~~~~~~~~~~-~----~~~~L 56 (89)
T d1gl4b_ 7 EEQRSQSVRPGADVTFICTAKS-------------------------KSPAYTLVWTRLHNGKLPSRAM-D----FNGIL 56 (89)
T ss_dssp CSCCEEEECTTCCEEEEEEEEE-------------------------SSSCCEEEEEEGGGBCCCTTEE-E----ETTEE
T ss_pred cCCCeEEEeCCCcEEEEEEccC-------------------------CCCCCEEEEecCCceeeccccE-e----eceEE
Confidence 5567788999999999999972 5788999999988776544322 1 23479
Q ss_pred EeccCCCCCCeeEEEEEEcCCCceEEEEEe
Q psy7039 199 DIPFCSRSDTGHYSLTLENNLGTATASAHV 228 (516)
Q Consensus 199 ~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~ 228 (516)
.|.+++.+|+|.|+|.+.|..|.......+
T Consensus 57 ~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l 86 (89)
T d1gl4b_ 57 TIRNVQPSDAGTYVCTGSNMFAMDQGTATL 86 (89)
T ss_dssp EECSCCGGGCEEEEEEEECSSCEEEEEEEE
T ss_pred EEecCCcccCEEEEEEEEECCCEEEEEEEE
Confidence 999999999999999999999987766544
|
| >d2nxyb2 b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C2 set domains domain: CD4 C2-set domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.14 E-value=2.3e-11 Score=90.30 Aligned_cols=76 Identities=14% Similarity=0.170 Sum_probs=64.4
Q ss_pred cEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEEEE
Q psy7039 364 DMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCK 443 (516)
Q Consensus 364 ~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~ 443 (516)
+..+.+|+.+.|.|.+.|.|.|.+.|++++..+.. +...|.|.++.. .|+|.|+|.|.|..|.....+.
T Consensus 8 ~~~v~~G~~~~L~C~~~g~p~P~i~W~~~~~~~~~----------~~~~l~i~~v~~-~DsG~Y~C~a~N~~g~~~~~~~ 76 (84)
T d2nxyb2 8 DTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQ----------GGKTLSVSQLEL-QDSGTWTCTVLQNQKKVEFKID 76 (84)
T ss_dssp SSCEETTCCEEEEEECCTTCCCEEEEECTTCCEEE----------ESSEEEESSCCG-GGCEEEEEEEEETTEEEEEEEE
T ss_pred CeEEECCCeEEEEEEeEcCCchheEEEeeccccee----------eeeeeeeeeccc-ccccEEEEEEEeCCCEEEEEEE
Confidence 35689999999999999999999999987754311 123689999999 9999999999999999999999
Q ss_pred EEEecCC
Q psy7039 444 VYVVDKP 450 (516)
Q Consensus 444 l~v~~~p 450 (516)
|.|...|
T Consensus 77 v~V~~~~ 83 (84)
T d2nxyb2 77 IVVLAFQ 83 (84)
T ss_dssp ECEECCC
T ss_pred EEEEecC
Confidence 9987654
|
| >d1fnha3 b.1.2.1 (A:183-271) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin, different Fn3 modules species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.14 E-value=4.3e-11 Score=90.00 Aligned_cols=80 Identities=25% Similarity=0.421 Sum_probs=68.1
Q ss_pred CCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCC-CeEEeEEeecCCcEEEeCCCcCCCeEEEEEEEecCC
Q psy7039 15 GKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTG-NWEKAVVVPAGETSCTVPGLIEGETYQFQVRAVNAA 93 (516)
Q Consensus 15 ~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~-~~~~~~~~~~~~~~~~i~~l~~~~~y~~~~~a~n~~ 93 (516)
++|.+|++..++++++.|+|++|. +.+.+|.|+|...++ .+..........+++.|.+|.++..|.|+++|.|..
T Consensus 2 daP~nl~v~~~~~~s~~l~W~~p~----~~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~t~Y~~~V~a~n~~ 77 (89)
T d1fnha3 2 DAPSNLRFLATTPNSLLVSWQPPR----ARITGYIIKYEKPGSPPREVVPRPRPGVTEATITGLEPGTEYTIYVIALKNN 77 (89)
T ss_dssp CCCEEEEEEEEETTEEEEEEECCS----SCCSEEEEEEECTTSCCEECTTCCCTTCCEEEEESCCTTCEEEEEEEEESSS
T ss_pred ccCcCCEEEEecCCEEEEEEeCCC----cCCceEEEEEeeccCCccEEEEEcCCCccEEEEEeeeCCCEEEEEEEEEcCC
Confidence 578999999999999999999974 458999999998766 555555566678899999999999999999999988
Q ss_pred CCCCC
Q psy7039 94 GPGEA 98 (516)
Q Consensus 94 g~~~~ 98 (516)
|.+.+
T Consensus 78 g~S~p 82 (89)
T d1fnha3 78 QKSEP 82 (89)
T ss_dssp CEEEE
T ss_pred CEeCC
Confidence 86543
|
| >d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cardiac myosin binding protein C, different domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.14 E-value=7.2e-11 Score=95.71 Aligned_cols=86 Identities=33% Similarity=0.638 Sum_probs=72.9
Q ss_pred ccccEEEEcCCeEEEEEEEeeecCCceEEEECCeecC-----------------------------CCCceEEEEcCCeE
Q psy7039 361 SIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVS-----------------------------PDGRIKFETSENQT 411 (516)
Q Consensus 361 ~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~-----------------------------~~~~~~~~~~~~~~ 411 (516)
.+..+.+..|+.+.|.|.+.|.|.|.+.|++++..+. ...++.+....+..
T Consensus 15 ~~~~v~v~~G~~v~L~C~v~G~P~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 94 (130)
T d1gxea_ 15 IPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLCETEGRVRVETTKDRS 94 (130)
T ss_dssp CCCEEEESSSSCCCCEEECCSBSCCEEEEEEECCCSCSSCCCCCCCCCCCCCCSSCCCCSCCCCCSCSSSCEEEEETTEE
T ss_pred CCCCEEEEcCCeEEEEEEEEEecCCeEEEeeCCeEccCCccceeeecccccccceeeecCCceeeccCceEEEEECCCEE
Confidence 3467789999999999999999999999998754332 12356666777788
Q ss_pred EEEEcCceecCCceEEEEEEEcCCCceeEEEEEEEe
Q psy7039 412 IYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVV 447 (516)
Q Consensus 412 ~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~v~ 447 (516)
.|.|.++.. .|+|.|+|.|.|..|..+.++.|.|.
T Consensus 95 ~L~I~~v~~-~D~G~Y~C~a~N~~G~~~~~~~l~V~ 129 (130)
T d1gxea_ 95 IFTVEGAEK-EDEGVYTVTVKNPVGEDQVNLTVKVI 129 (130)
T ss_dssp EEECSCCCT-TTCEEEEEEEECSSCEEEEEEEEEEC
T ss_pred EEEECcCCh-hcCEEEEEEEEECCCEEEEEEEEEEE
Confidence 999999999 99999999999999999999999885
|
| >d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Perlecan Ig3 domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.14 E-value=6.7e-11 Score=88.91 Aligned_cols=81 Identities=20% Similarity=0.247 Sum_probs=66.3
Q ss_pred ccccEEEEcCCeEEEEEEEe-eecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCcee
Q psy7039 361 SIRDMTVLAGEEFTITVPFS-GRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDS 439 (516)
Q Consensus 361 ~~~~~~v~~g~~~~l~C~~~-g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s 439 (516)
.+....+.+|+.+.|.|.+. +.|.+.+.|++++..+..... ... . ..|.|.++.. .|+|.|+|.|.|..|..+
T Consensus 8 ~p~~~~v~~G~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~-~~~--~--~~L~i~~v~~-~d~G~Y~C~a~N~~G~~~ 81 (89)
T d1gl4b_ 8 EQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRA-MDF--N--GILTIRNVQP-SDAGTYVCTGSNMFAMDQ 81 (89)
T ss_dssp SCCEEEECTTCCEEEEEEEEESSSCCEEEEEEGGGBCCCTTE-EEE--T--TEEEECSCCG-GGCEEEEEEEECSSCEEE
T ss_pred CCCeEEEeCCCcEEEEEEccCCCCCCEEEEecCCceeecccc-Eee--c--eEEEEecCCc-ccCEEEEEEEEECCCEEE
Confidence 34567899999999999997 567889999999877654432 211 2 3699999999 999999999999999998
Q ss_pred EEEEEEEe
Q psy7039 440 ASCKVYVV 447 (516)
Q Consensus 440 ~s~~l~v~ 447 (516)
.++.|.|+
T Consensus 82 ~~~~l~V~ 89 (89)
T d1gl4b_ 82 GTATLHVQ 89 (89)
T ss_dssp EEEEEEEC
T ss_pred EEEEEEEC
Confidence 88888773
|
| >d2dn7a1 b.1.2.1 (A:8-101) Receptor-type tyrosine-protein phosphatase F, PTPRF {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Receptor-type tyrosine-protein phosphatase F, PTPRF species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.14 E-value=6.9e-11 Score=89.87 Aligned_cols=83 Identities=30% Similarity=0.440 Sum_probs=68.9
Q ss_pred CCCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCC-CeEEeEEeecCCcEEEeCCCcCCCeEEEEEEEecC
Q psy7039 14 PGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTG-NWEKAVVVPAGETSCTVPGLIEGETYQFQVRAVNA 92 (516)
Q Consensus 14 p~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~-~~~~~~~~~~~~~~~~i~~l~~~~~y~~~~~a~n~ 92 (516)
|++|.. .+...+++++.|+|.+|. +.+++|.+|.|+|+..+. .|... ......++++|.+|.++..|.|+++|.|.
T Consensus 1 P~~P~~-~~~~~~~~sv~l~W~pP~-~~~g~i~~Y~i~~~~~~~~~~~~~-~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~ 77 (94)
T d2dn7a1 1 PGRPTM-MISTTAMNTALLQWHPPK-ELPGELLGYRLQYCRADEARPNTI-DFGKDDQHFTVTGLHKGTTYIFRLAAKNR 77 (94)
T ss_dssp CCCCEE-EEEECSTTEEEEEEECCS-SCSSCCCEEEEEEEETTCSSCEEE-EEETTCCEEEEECCCTTCEEEEEEEEEET
T ss_pred CCCCcE-eEEEEeCCEEEEEEeCCC-CCCCceEEEEEEEEEcCCCCcEEE-EcCCCccEEEEEccCCeeEEEEEEEEEcC
Confidence 788875 466688999999999986 445689999999998766 56544 45567889999999999999999999999
Q ss_pred CCCCCCC
Q psy7039 93 AGPGEAS 99 (516)
Q Consensus 93 ~g~~~~s 99 (516)
.|.+.++
T Consensus 78 ~G~g~~s 84 (94)
T d2dn7a1 78 AGLGEEF 84 (94)
T ss_dssp TEEEEEE
T ss_pred CcCCCCc
Confidence 9987754
|
| >d1wj3a_ b.1.2.1 (A:) Contactin 3 (KIAA1496) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Contactin 3 (KIAA1496) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.13 E-value=1.9e-10 Score=91.26 Aligned_cols=97 Identities=21% Similarity=0.260 Sum_probs=75.3
Q ss_pred CCcceeccCCCCCCCCCcceEEEeeeCCeeEEEecCCC-CCCCCceeceEEEEEeCCCCeEEeEEeecCCcEEEeCCCcC
Q psy7039 1 MDHSVLIKNPFDEPGKPTDLEATDWDKDHVDLQWTPPI-SDGGSPITGYVVEMKDKTGNWEKAVVVPAGETSCTVPGLIE 79 (516)
Q Consensus 1 ~~~~~~~~~~~~~p~~p~~l~~~~~~~~~v~l~W~~p~-~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~i~~l~~ 79 (516)
.|..|.+++..++|+.|..+.+..++.++|.|+|.+|. .+.++.|.+|+|+|+..+..+..+.. ....+.+.+|++
T Consensus 5 ~S~~v~v~T~~~~P~~pp~~~~~~~~~~~i~v~W~~~~~~~~~g~i~~Y~v~y~~~~~~~~~~~~---~~~~~~~~~L~p 81 (117)
T d1wj3a_ 5 SSGTVNVTTKKTPPSQPPGNVVWNATDTKVLLNWEQVKAMENESEVTGYKVFYRTSSQNNVQVLN---TNKTSAELVLPI 81 (117)
T ss_dssp CCCCCCCCCSCCCCCCCCCSCBCCEETTEEEEECCCCCCCSSSCCEEEEEEEEEESSCSSCEEEE---ESSSEEEEECCC
T ss_pred CCCCEEEEcCCCCcCCCCcceEEeecCCEEEEEEeecccccCCCceeEEEEEEEecCCCceeeee---ceeeEEEeeccC
Confidence 47789999999999855444456688999999999843 34556899999999987763323222 245677779999
Q ss_pred CCeEEEEEEEecCCCCCCCCC
Q psy7039 80 GETYQFQVRAVNAAGPGEASK 100 (516)
Q Consensus 80 ~~~y~~~~~a~n~~g~~~~s~ 100 (516)
++.|.|+|+|.|..|.+..+.
T Consensus 82 ~t~Y~~~V~A~n~~G~G~~S~ 102 (117)
T d1wj3a_ 82 KEDYIIEVKATTDGGDGTSSE 102 (117)
T ss_dssp SSCEEEEEEEEESSCCCCBCC
T ss_pred CcEEEEEEEEEcCCccCCCCC
Confidence 999999999999999988765
|
| >d1f6fb2 b.1.2.1 (B:101-203) Prolactin receptor {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Prolactin receptor species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.13 E-value=3.4e-10 Score=87.52 Aligned_cols=86 Identities=26% Similarity=0.408 Sum_probs=68.0
Q ss_pred CCCCCcceEEE----eeeCCeeEEEecCCCC---CCCCceeceEEEEEeCCC-CeEEeEEeecCCcEEEeCCCcCCCeEE
Q psy7039 13 EPGKPTDLEAT----DWDKDHVDLQWTPPIS---DGGSPITGYVVEMKDKTG-NWEKAVVVPAGETSCTVPGLIEGETYQ 84 (516)
Q Consensus 13 ~p~~p~~l~~~----~~~~~~v~l~W~~p~~---~~~~~i~~Y~v~~~~~~~-~~~~~~~~~~~~~~~~i~~l~~~~~y~ 84 (516)
.|+||.+|.+. ...+++|.|+|.+|.. +++..++.|+|+|++.+. .|..... ...+.+.|.+|.+++.|.
T Consensus 2 kP~pP~nl~~~~~~~~~~~~~v~vsW~pP~~~~~~~~~~~l~Y~v~~~~~~~~~~~~~~~--~~~~~~~i~~L~p~t~Y~ 79 (103)
T d1f6fb2 2 EPEPPRNLTLEVKQLKDKKTYLWVKWSPPTITDVKTGWFTMEYEIRLKPEEAEEWEIHFT--GHQTQFKVFDLYPGQKYL 79 (103)
T ss_dssp CCCCCEEEEEEEC----CCCCEEEEEECCTTSCTTTTSSCEEEEEEEEESSCSCCEEEEE--ETCSEEEECCCCTTCEEE
T ss_pred CCCCCCCCEEEEEecccCCCEEEEEECCCCcccCCCCcEEEEEEEEEEeCCCcceeeecc--cceeEEEeCCCCcceEEE
Confidence 58999999885 3456779999999852 344578899999999777 7765543 368899999999999999
Q ss_pred EEEEEecCCCC-CCCCC
Q psy7039 85 FQVRAVNAAGP-GEASK 100 (516)
Q Consensus 85 ~~~~a~n~~g~-~~~s~ 100 (516)
|+|+|.+..|. +.++.
T Consensus 80 ~rVra~~~~G~wS~wS~ 96 (103)
T d1f6fb2 80 VQTRCKPDHGYWSRWSQ 96 (103)
T ss_dssp EEEEEEESSSCCCCCCC
T ss_pred EEEEEEeCCCCCCCCcC
Confidence 99999998885 55544
|
| >d1erna2 b.1.2.1 (A:117-221) Erythropoietin (EPO) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Erythropoietin (EPO) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.13 E-value=4.6e-10 Score=87.08 Aligned_cols=97 Identities=28% Similarity=0.329 Sum_probs=76.2
Q ss_pred CCCCCCcceEEEeeeC-CeeEEEecCCCCCCCCceeceEEEEEeCCC-CeEEeEEeecCCcEEEeCCCcCCCeEEEEEEE
Q psy7039 12 DEPGKPTDLEATDWDK-DHVDLQWTPPISDGGSPITGYVVEMKDKTG-NWEKAVVVPAGETSCTVPGLIEGETYQFQVRA 89 (516)
Q Consensus 12 ~~p~~p~~l~~~~~~~-~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~-~~~~~~~~~~~~~~~~i~~l~~~~~y~~~~~a 89 (516)
-+|+||.+|.+....+ +.+.|+|.+|..+.+..++.|+|+|+..++ .+........+.+++.|.+|+++..|.|+|+|
T Consensus 3 Vk~dPP~nl~v~~~~~~~~l~v~W~~P~~~~~~~~~~Y~v~y~~~~~~~~~~~~~~~~~~t~~~i~~L~p~t~Y~~rVRa 82 (105)
T d1erna2 3 VLLDAPVGLVARLADESGHVVLRWLPPPETPMTSHIRYEVDVSAGNGAGSVQRVEILEGRTECVLSNLRGRTRYTFAVRA 82 (105)
T ss_dssp BCCCCCEEEEEEECCC-CCEEEEEECSSSCSCGGGEEEEEEEEEC-CCCEEEEEEECTTCCEEEECSCCSSCEEEEEEEE
T ss_pred cccCCCCCCEEEEecCCCcEEEEeeeccccccceEEEEEEEEecCCCCCceEEEeecCCccEEEEeCCCCCcEEEEEEEE
Confidence 3689999999986644 469999999877777888899999998776 45555566667889999999999999999999
Q ss_pred ecC--CCCCCCCCCCcceEec
Q psy7039 90 VNA--AGPGEASKPTAPIVAK 108 (516)
Q Consensus 90 ~n~--~g~~~~s~~~~~~~~~ 108 (516)
.+. .+.+.+|..+..+.+.
T Consensus 83 r~~~~~~~G~WSeWS~~v~~~ 103 (105)
T d1erna2 83 RMAEPSFGGFWSAWSEPVSLL 103 (105)
T ss_dssp EECSSSCCBCCCCCCCCEEEE
T ss_pred EECCCCCCCCCCCCCCCEEee
Confidence 854 3456667777666543
|
| >d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Twitchin species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]
Probab=99.13 E-value=2.4e-11 Score=91.27 Aligned_cols=77 Identities=21% Similarity=0.353 Sum_probs=69.0
Q ss_pred CcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEeecCCeeEE
Q psy7039 119 STLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTTKSETVL 198 (516)
Q Consensus 119 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l 198 (516)
.++.++.+.+|+++.|.|.+. .|.+.+.|++++..+..+.++.+...+..++|
T Consensus 6 ~~l~d~~v~~G~~~~~~c~vs---------------------------~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~L 58 (89)
T d1tiua_ 6 KPLYGVEVFVGETAHFEIELS---------------------------EPDVHGQWKLKGQPLTASPDCEIIEDGKKHIL 58 (89)
T ss_dssp BCCCCEEEETTSCCCEEEBCS---------------------------SSSCCCBCCSSSCCCCSSSSCEEEECSSCEEE
T ss_pred cCCcCEEEeCCCcEEEEEEEC---------------------------CCCcEEEEEEeeeecccceeEEEEeeceeEEE
Confidence 567889999999999999965 57889999999999999999999988889999
Q ss_pred EeccCCCCCCeeEEEEEEcCCCce
Q psy7039 199 DIPFCSRSDTGHYSLTLENNLGTA 222 (516)
Q Consensus 199 ~i~~~~~~d~g~Y~c~~~~~~g~~ 222 (516)
.|.+++.+|+|.|+|.+.|..+..
T Consensus 59 ~I~~~~~~D~G~Y~c~a~n~~~sa 82 (89)
T d1tiua_ 59 ILHNCQLGMTGEVSFQAANAKSAA 82 (89)
T ss_dssp ECCSCCSCCCSEECCBCSSCBCCE
T ss_pred EEcCCChhcCEEEEEEECceEEEE
Confidence 999999999999999998765543
|
| >d1qr4a2 b.1.2.1 (A:88-175) Tenascin {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Tenascin species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=99.13 E-value=1.5e-10 Score=86.65 Aligned_cols=79 Identities=24% Similarity=0.428 Sum_probs=68.0
Q ss_pred CCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCC-CeEEeEEeecCCcEEEeCCCcCCCeEEEEEEEecCC
Q psy7039 15 GKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTG-NWEKAVVVPAGETSCTVPGLIEGETYQFQVRAVNAA 93 (516)
Q Consensus 15 ~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~-~~~~~~~~~~~~~~~~i~~l~~~~~y~~~~~a~n~~ 93 (516)
++|.+|++..++++++.|+|.+|. +.+.+|.|+|...+. .|... ......+++.|.+|.++..|.|++.|.|..
T Consensus 2 ~~P~~l~v~~v~~~s~~l~W~~~~----~~~~~Y~i~~~~~~~~~~~~~-~~~~~~~~~~i~~L~p~t~Y~~~V~a~~~~ 76 (88)
T d1qr4a2 2 GSPKGISFSDITENSATVSWTPPR----SRVDSYRVSYVPITGGTPNVV-TVDGSKTRTKLVKLVPGVDYNVNIISVKGF 76 (88)
T ss_dssp CCCSCEEEESCCSSCEEEEECCCS----SCCSEEEEEEEETTCCCCEEE-EEETTCCEEEECSCCSSCEEEEEEEEEETT
T ss_pred cCCcceEEEEecCCEEEEEEEccc----EeeceEEEEEEeccCCceEEE-EecCCccEEEECCCCCCCEEEEEEEEEeCC
Confidence 689999999999999999999874 458999999998766 55443 445678999999999999999999999998
Q ss_pred CCCCC
Q psy7039 94 GPGEA 98 (516)
Q Consensus 94 g~~~~ 98 (516)
|.+.+
T Consensus 77 g~s~p 81 (88)
T d1qr4a2 77 EESEP 81 (88)
T ss_dssp EECCC
T ss_pred CCcCC
Confidence 87765
|
| >d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Intercellular adhesion molecule-1, ICAM-1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.13 E-value=4.1e-11 Score=88.50 Aligned_cols=74 Identities=20% Similarity=0.183 Sum_probs=62.3
Q ss_pred ccccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeE
Q psy7039 361 SIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSA 440 (516)
Q Consensus 361 ~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~ 440 (516)
.+.++.+.+|+.+.|.|.+.|.|.|.+.|++++..+.... .+.++.. .|+|.|.|.|.|..|..+.
T Consensus 10 ~p~~~~~~~G~~~~l~C~a~G~P~P~v~W~k~g~~~~~~~-------------~~~~v~~-~d~G~Y~C~A~N~~G~~~~ 75 (84)
T d2oz4a3 10 CPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIG-------------ESVTVTR-DLEGTYLCRARSTQGEVTR 75 (84)
T ss_dssp SCSEEEEETTCEECCCCCCEEESCCEEEEEETTTEECCTT-------------SCEECCG-GGCEEEEEEEEETTEEEEE
T ss_pred CCccEEEeCCCEEEEEEEEeEcCccEEEEEEeeccceeee-------------eeecccc-CCCCEEEEEEEcCCCEEEE
Confidence 4567889999999999999999999999999987654322 2335677 9999999999999999988
Q ss_pred EEEEEEec
Q psy7039 441 SCKVYVVD 448 (516)
Q Consensus 441 s~~l~v~~ 448 (516)
.+.|.|..
T Consensus 76 ~~~l~V~~ 83 (84)
T d2oz4a3 76 EVTVNVLS 83 (84)
T ss_dssp EEEEEEEC
T ss_pred EEEEEEEC
Confidence 88888864
|
| >d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fibroblast growth factor receptor, FGFR species: Human (Homo sapiens), FGFR1 [TaxId: 9606]
Probab=99.13 E-value=1.5e-10 Score=90.70 Aligned_cols=91 Identities=22% Similarity=0.249 Sum_probs=67.0
Q ss_pred CCccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeecc----CCc--
Q psy7039 113 APRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQI----GGR-- 186 (516)
Q Consensus 113 ~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~----~~~-- 186 (516)
+|.|....+.++.+..|+++.|.|.+. |.|.+.|.|++++..... ...
T Consensus 4 ~P~i~~~~P~~~tv~~G~~v~l~C~v~--------------------------g~P~p~v~W~k~~~~~~~~~~~~~~~~ 57 (109)
T d2fdbp2 4 RPILQAGLPANASTVVGGDVEFVCKVY--------------------------SDAQPHIQWIKHVEKNGSKYGPDGLPY 57 (109)
T ss_dssp CCEECTTCSCCEEECTTCCEEEEEEEE--------------------------CSSCCEEEEEEEC-------------C
T ss_pred CCEEcCCCCCCEEEecCCcEEEEEEEE--------------------------EcCCCeEEEEecCccCCceeccCCcee
Confidence 566664457889999999999999999 999999999986543211 110
Q ss_pred eE-------EeecCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEEee
Q psy7039 187 AD-------VQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVT 229 (516)
Q Consensus 187 ~~-------~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~~ 229 (516)
.. .........|.|.+++.+|+|.|+|.+.|..|....+..+.
T Consensus 58 ~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~L~ 107 (109)
T d2fdbp2 58 LKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWLT 107 (109)
T ss_dssp EEEECCEEEEETTEEEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEE
T ss_pred EeecccceeEEecCCcEEEEECCCCHHHCeEEEEEEEECCCEEEEEEEEE
Confidence 11 11123356899999999999999999999999887766543
|
| >d1fnaa_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin, different Fn3 modules species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.13 E-value=3.3e-10 Score=85.39 Aligned_cols=81 Identities=25% Similarity=0.416 Sum_probs=68.7
Q ss_pred cceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCC-CeEEeEEeecCCcEEEeCCCcCCCeEEEEEEEecCCCCC
Q psy7039 18 TDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTG-NWEKAVVVPAGETSCTVPGLIEGETYQFQVRAVNAAGPG 96 (516)
Q Consensus 18 ~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~-~~~~~~~~~~~~~~~~i~~l~~~~~y~~~~~a~n~~g~~ 96 (516)
+||++..++++++.|+|.+|. +.+.+|.|+|...++ .+......+.+.+++.|.+|.|+..|.|++.|.+..|.+
T Consensus 1 rnl~v~~~t~~sv~l~W~~p~----~~~~~Y~v~~~~~~~~~~~~~~~~~~~~t~~~l~~L~p~t~Y~~~V~a~~~~g~s 76 (91)
T d1fnaa_ 1 RDLEVVAATPTSLLISWDAPA----VTVRYYRITYGETGGNSPVQEFTVPGSKSTATISGLKPGVDYTITVYAVTGRGDS 76 (91)
T ss_dssp CCCEEEEECSSCEEEECCCCS----SCCSEEEEEEEETTCCSCCEEEEEETTCCEEEECSCCTTCEEEEEEEEECTTCCS
T ss_pred CCCEEEEeCCCEEEEEEEccc----eEecEEEEEEEcCCCCceeEEEEeCCCccEEEeCCCCCCCEEEEEEEEEeCCccC
Confidence 479999999999999999874 358899999998665 665565667789999999999999999999999999988
Q ss_pred CCCCCC
Q psy7039 97 EASKPT 102 (516)
Q Consensus 97 ~~s~~~ 102 (516)
.++...
T Consensus 77 ~~~s~~ 82 (91)
T d1fnaa_ 77 PASSKP 82 (91)
T ss_dssp SCSCCC
T ss_pred CCcCCC
Confidence 765443
|
| >d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=99.13 E-value=4.5e-11 Score=92.85 Aligned_cols=83 Identities=23% Similarity=0.220 Sum_probs=65.4
Q ss_pred CcccceEEecCCeEEEEEee-eeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEeecCCeeE
Q psy7039 119 STLNDVKIKAGQSFSFDVKE-FRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTTKSETV 197 (516)
Q Consensus 119 ~~~~~~~v~~g~~~~l~C~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~ 197 (516)
.+...+.+.+|+.+.|.|.+ . +.|.+.+.|++++..+......+.......++
T Consensus 9 ~~~~~v~v~eG~~~~l~C~~~~--------------------------~~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~~ 62 (105)
T d1cs6a2 9 EERDPVKITEGWGVMFTCSPPP--------------------------HYPALSYRWLLNEFPNFIPADGRRFVSQTTGN 62 (105)
T ss_dssp SCCCCEEEETTSCEEECCCCCS--------------------------EESCCEEEEEESSTTCBCCCCSSEEECTTTCC
T ss_pred CCCCCEEEeCCCeEEEEEEccC--------------------------CCCCCEEEEEEeeccccccccceeeeecCCCE
Confidence 44456889999999999997 5 78999999999987765433333333444568
Q ss_pred EEeccCCCCCCeeEEEEEEcCCCceEEEEE
Q psy7039 198 LDIPFCSRSDTGHYSLTLENNLGTATASAH 227 (516)
Q Consensus 198 l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~ 227 (516)
|.|.+++.+|+|.|+|.+.|..|.......
T Consensus 63 L~I~~v~~~D~G~Y~C~a~N~~g~~~~~v~ 92 (105)
T d1cs6a2 63 LYIAKTEASDLGNYSCFATSHIDFITKSVF 92 (105)
T ss_dssp EEESSCCGGGCEEEEEEEEEEETTEEEEEE
T ss_pred EeecccccccCcEEEEEEEECCCCEEEEEE
Confidence 999999999999999999998887765543
|
| >d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Hemolin species: Moth (Hyalophora cecropia) [TaxId: 7123]
Probab=99.13 E-value=1e-10 Score=89.39 Aligned_cols=77 Identities=19% Similarity=0.186 Sum_probs=64.9
Q ss_pred ccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEE--eecCCeeEE
Q psy7039 121 LNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADV--QTTKSETVL 198 (516)
Q Consensus 121 ~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~--~~~~~~~~l 198 (516)
..++.+.+|+++.|.|.+. |.|.+.+.|++++..+.......+ .......+|
T Consensus 10 ~~~~~~~~G~~v~l~C~~~--------------------------g~P~~~v~W~k~g~~i~~~~~~~~~~~~~~~~~~L 63 (97)
T d1biha3 10 SKDMMAKAGDVTMIYCMYG--------------------------SNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRL 63 (97)
T ss_dssp CCSEEEETTSCEEEEEEEE--------------------------CSSCCCCEEEETTEECCCCTTSSEESCSSSTTSEE
T ss_pred CCCEEEecCCeEEEEEEEE--------------------------EecCCEEEEEEeeeeccccceeeeeeeeecCCCEE
Confidence 3568899999999999999 999999999999999876544433 234455689
Q ss_pred EeccCCCCCCeeEEEEEEcCCCceE
Q psy7039 199 DIPFCSRSDTGHYSLTLENNLGTAT 223 (516)
Q Consensus 199 ~i~~~~~~d~g~Y~c~~~~~~g~~~ 223 (516)
.|.+++.+|+|.|+|.+.|..|...
T Consensus 64 ~I~~~~~~D~G~Y~C~a~N~~G~~~ 88 (97)
T d1biha3 64 LFKTTLPEDEGVYTCEVDNGVGKPQ 88 (97)
T ss_dssp EESSCCGGGCEEEEEEECCSSSSCE
T ss_pred EEEeccccccEEEEEEEEECCCcEE
Confidence 9999999999999999999998754
|
| >d1x5ia1 b.1.2.1 (A:8-120) Neogenin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Neogenin species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.13 E-value=1.7e-10 Score=90.94 Aligned_cols=87 Identities=20% Similarity=0.290 Sum_probs=71.4
Q ss_pred CCCCCCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCCCeEEeEEeecCCcEEEeCCCcCCCeEEEEEEEe
Q psy7039 11 FDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVVVPAGETSCTVPGLIEGETYQFQVRAV 90 (516)
Q Consensus 11 ~~~p~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~~~a~ 90 (516)
.++|++|.++++. ...++|.|+|.+|. +++++|.+|.|+|+..+..+.. .......+.++|.+|.++..|.|+++|.
T Consensus 18 ~~vP~~P~~~~~~-~~~~si~v~W~~p~-~~~g~i~~Y~i~~~~~~~~~~~-~~~~~~~~~~~i~~L~p~t~Y~~~V~A~ 94 (113)
T d1x5ia1 18 TRVPEVPSSLHVR-PLVTSIVVSWTPPE-NQNIVVRGYAIGYGIGSPHAQT-IKVDYKQRYYTIENLDPSSHYVITLKAF 94 (113)
T ss_dssp SSCCCSCSEEEEE-EETTEEEEEEECCS-CTTBCCCEEEEEECSSCGGGEE-EECCTTCCEEEECSCCSSCEECCEEEEE
T ss_pred CCCCCCCEeeeee-eCCCEEEEEEEccc-cCCccEEEEEEEeeecccccee-eeeeCCccEEEEeccccCcEEEEEEEEE
Confidence 4589999999987 46789999999986 4456899999999877663332 2445678999999999999999999999
Q ss_pred cCCCCCCCCC
Q psy7039 91 NAAGPGEASK 100 (516)
Q Consensus 91 n~~g~~~~s~ 100 (516)
|..|.+.+..
T Consensus 95 n~~G~g~~~~ 104 (113)
T d1x5ia1 95 NNVGEGIPLY 104 (113)
T ss_dssp CSSCBCCCCC
T ss_pred CCCcCCCCee
Confidence 9999887643
|
| >d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Myosin-binding protein C, slow-type species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.12 E-value=5.7e-11 Score=93.77 Aligned_cols=93 Identities=18% Similarity=0.153 Sum_probs=71.9
Q ss_pred cccccEEEEcCCeEEEEEEEeeec---CCceEEEECCeec---CCCCceEEEE------cCCeEEEEEcCceecCCceEE
Q psy7039 360 LSIRDMTVLAGEEFTITVPFSGRP---KPTPIWTVNGDEV---SPDGRIKFET------SENQTIYRNKSAKRATDSGSY 427 (516)
Q Consensus 360 ~~~~~~~v~~g~~~~l~C~~~g~p---~~~i~W~~~~~~l---~~~~~~~~~~------~~~~~~l~i~~~~~~~~~g~y 427 (516)
..+.+..+..|+++.|.|.+.|.| .|.|.|++++... ....++.... ......|.|.++.. .|+|.|
T Consensus 5 ~~P~~~~v~~G~~v~l~C~v~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~-~D~G~Y 83 (113)
T d2dava1 5 EKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKD-NFAGNY 83 (113)
T ss_dssp SCCCCCEEETTCCEEEEEEEECCCSSSCCEEEEEESSSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCT-TSCEEE
T ss_pred ECCceEEEeCCCEEEEEEEEccCCCCCCCEEEEEEeeccccccccceeeeeccceeeEeecCEEEEEEccCCH-HHCeEE
Confidence 356778999999999999999998 5799999987432 1223332221 11235799999999 999999
Q ss_pred EEEEEcCCCceeEEEEEEEecCCCCC
Q psy7039 428 TIQLVNTVGSDSASCKVYVVDKPSPP 453 (516)
Q Consensus 428 ~c~a~n~~G~~s~s~~l~v~~~p~~P 453 (516)
+|.|.|..|..+.++.|.|..++..+
T Consensus 84 ~C~a~N~~G~~~~~~~L~V~~~~~~~ 109 (113)
T d2dava1 84 RCEVTYKDKFDSCSFDLEVHESTGTT 109 (113)
T ss_dssp EEEEECSSCEEEECCEEEEECCCCSC
T ss_pred EEEEEeCCCEEEEEEEEEEEcCCCcC
Confidence 99999999999999999998665443
|
| >d2nxyb2 b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C2 set domains domain: CD4 C2-set domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.12 E-value=3.9e-11 Score=89.03 Aligned_cols=74 Identities=12% Similarity=0.090 Sum_probs=61.8
Q ss_pred ceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEeecCCeeEEEecc
Q psy7039 123 DVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPF 202 (516)
Q Consensus 123 ~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~ 202 (516)
...+.+|++++|.|.+. |.|.|.+.|++++..+.. ....|.|.+
T Consensus 8 ~~~v~~G~~~~L~C~~~--------------------------g~p~P~i~W~~~~~~~~~----------~~~~l~i~~ 51 (84)
T d2nxyb2 8 DTHLLQGQSLTLTLESP--------------------------PGSSPSVQCRSPRGKNIQ----------GGKTLSVSQ 51 (84)
T ss_dssp SSCEETTCCEEEEEECC--------------------------TTCCCEEEEECTTCCEEE----------ESSEEEESS
T ss_pred CeEEECCCeEEEEEEeE--------------------------cCCchheEEEeeccccee----------eeeeeeeee
Confidence 35688999999999999 999999999997765432 234789999
Q ss_pred CCCCCCeeEEEEEEcCCCceEEEEEeecee
Q psy7039 203 CSRSDTGHYSLTLENNLGTATASAHVTGTE 232 (516)
Q Consensus 203 ~~~~d~g~Y~c~~~~~~g~~~~~~~~~~~~ 232 (516)
++.+|+|.|+|.+.|..|.......+.+..
T Consensus 52 v~~~DsG~Y~C~a~N~~g~~~~~~~v~V~~ 81 (84)
T d2nxyb2 52 LELQDSGTWTCTVLQNQKKVEFKIDIVVLA 81 (84)
T ss_dssp CCGGGCEEEEEEEEETTEEEEEEEEECEEC
T ss_pred cccccccEEEEEEEeCCCEEEEEEEEEEEe
Confidence 999999999999999999887776665543
|
| >d1iarb2 b.1.2.1 (B:97-197) Interleukin-4 receptor alpha chain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Interleukin-4 receptor alpha chain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.12 E-value=1.9e-10 Score=88.67 Aligned_cols=94 Identities=19% Similarity=0.173 Sum_probs=65.2
Q ss_pred CCCCCcceEEEeeeCCeeEEEecCCCCCCCC--ceeceEEEEEeCCC-CeEEeEEe--ecCCcEEEeCCCcCCCeEEEEE
Q psy7039 13 EPGKPTDLEATDWDKDHVDLQWTPPISDGGS--PITGYVVEMKDKTG-NWEKAVVV--PAGETSCTVPGLIEGETYQFQV 87 (516)
Q Consensus 13 ~p~~p~~l~~~~~~~~~v~l~W~~p~~~~~~--~i~~Y~v~~~~~~~-~~~~~~~~--~~~~~~~~i~~l~~~~~y~~~~ 87 (516)
+|++|.+|.+..+.++++.|+|.+|...++. ....|.|+|+..+. .|...... ......+.|.+|.+++.|.|+|
T Consensus 1 kP~~P~~l~v~~~~~~s~~v~W~~P~~~~~~~~~~~~y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~rV 80 (101)
T d1iarb2 1 KPRAPGNLTVHTNVSDTLLLTWSNPYPPDNYLYNHLTYAVNIWSENDPADFRIYNVTYLEPSLRIAASTLKSGISYRARV 80 (101)
T ss_dssp CCCCCEEEEEC----CCEEEEEECSSCTTSTTGGGCEEEEEEEESSSCSCEEEEEECSSCCEEEECC-----CCCEEEEE
T ss_pred CcccCCcCEEEEEeCCeEEEEEccccCCCCccceeeEEEEeeecccceeeeeeeeeccCccceEEEECCCCCCCEEEEEE
Confidence 5899999999999999999999988544433 23469999988766 55444333 2345778999999999999999
Q ss_pred EEecCCCCCCCCCCCcceE
Q psy7039 88 RAVNAAGPGEASKPTAPIV 106 (516)
Q Consensus 88 ~a~n~~g~~~~s~~~~~~~ 106 (516)
+|.|..|.+.+|..+..++
T Consensus 81 rA~~~~g~g~wSewS~~v~ 99 (101)
T d1iarb2 81 RAWAQAYNTTWSEWSPSTK 99 (101)
T ss_dssp EEECGGGTCCCCCCCCCEE
T ss_pred EEEcCCCCCCCcCCCCCEE
Confidence 9999999988887765543
|
| >d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Hemolin species: Moth (Hyalophora cecropia) [TaxId: 7123]
Probab=99.12 E-value=5.4e-11 Score=90.48 Aligned_cols=83 Identities=18% Similarity=0.198 Sum_probs=67.2
Q ss_pred CCccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCce-eeEEeeCCeeeccCCceEEee
Q psy7039 113 APRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFL-NHGWSINGQVCQIGGRADVQT 191 (516)
Q Consensus 113 ~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~i~W~~~~~~~~~~~~~~~~~ 191 (516)
.|.|. ..+.++.+.+|+.+.|.|.+. |.|.+ .+.|++++..+.........
T Consensus 2 ~P~i~-~~p~~~~v~~g~~~~l~C~~~--------------------------g~p~p~~v~W~~~g~~l~~~~~~~~~- 53 (94)
T d1biha1 2 YPVLK-DQPAEVLFRENNPTVLECIIE--------------------------GNDQGVKYSWKKDGKSYNWQEHNAAL- 53 (94)
T ss_dssp CCEEC-CCCSEEEEETTSCEEECCCEE--------------------------SCCSSCEEEEEESSSBCCTTTTTEEE-
T ss_pred CCEEE-ecCCcEEEeCCCeEEEEEEec--------------------------CCCCeeEEEEEeeeeeeeeecceeee-
Confidence 46666 667789999999999999999 88865 79999999988755433322
Q ss_pred cCCeeEEEeccCCCCCCeeEEEEEEcCCCceE
Q psy7039 192 TKSETVLDIPFCSRSDTGHYSLTLENNLGTAT 223 (516)
Q Consensus 192 ~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~ 223 (516)
.....+|.|.+++.+|+|.|+|.+.|..|...
T Consensus 54 ~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~ 85 (94)
T d1biha1 54 RKDEGSLVFLRPQASDEGHYQCFAETPAGVAS 85 (94)
T ss_dssp CTTSCCEEESSCCGGGCEEEEEEEEETTEEEE
T ss_pred cccceEEEEeccChhcCeEEEEEEEeCCCEEE
Confidence 34456899999999999999999999988643
|
| >d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cervical EMMPRIN species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.11 E-value=2.2e-10 Score=88.33 Aligned_cols=86 Identities=17% Similarity=0.202 Sum_probs=71.1
Q ss_pred cccEEEEcCCeEEEEEEEeeecCC-ceEEEECCeec------CCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcC
Q psy7039 362 IRDMTVLAGEEFTITVPFSGRPKP-TPIWTVNGDEV------SPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNT 434 (516)
Q Consensus 362 ~~~~~v~~g~~~~l~C~~~g~p~~-~i~W~~~~~~l------~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~ 434 (516)
+....+.+|+.+.|.|.+.|.|.+ .+.|++++... ....++.+......+.|.|.++....|+|.|.|.|.|.
T Consensus 9 ~~~~~v~~G~~v~l~C~v~g~P~p~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~~D~G~Y~C~A~N~ 88 (101)
T d3b5ha1 9 KSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSS 88 (101)
T ss_dssp CSEEEECTTSCEEEEEECCCSSCCCEEEEEECCSSSCEECCTTGGGTEEEEEETTEEEEEECSCCTTTSSEEEEEEEEET
T ss_pred CCcEEECcCCeEEEEEEEEecCCeeEEEEEeccceeeeecccCCCceEEEEeCCCEEEEEEeccccccCCEEEEEEEEEC
Confidence 456778999999999999999988 79999876332 12346777777888899999998427999999999999
Q ss_pred CCceeEEEEEEEe
Q psy7039 435 VGSDSASCKVYVV 447 (516)
Q Consensus 435 ~G~~s~s~~l~v~ 447 (516)
.|..+..+.|.|+
T Consensus 89 ~G~~~~~~~L~Vr 101 (101)
T d3b5ha1 89 KGSDQAIITLRVR 101 (101)
T ss_dssp TEEEEEEEEEEEC
T ss_pred CCEEEEEEEEEEC
Confidence 9999988888874
|
| >d1va9a1 b.1.2.1 (A:8-116) Down syndrome cell adhesion molecule-like protein 1, DSCAML1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Down syndrome cell adhesion molecule-like protein 1, DSCAML1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.11 E-value=1.1e-10 Score=91.51 Aligned_cols=95 Identities=21% Similarity=0.345 Sum_probs=74.0
Q ss_pred ccCCCCCC-CCCcceEEEeeeCCeeEEEecCCC-CCCCCceeceEEEEEeCCC-CeE---Ee-EEeecCCcEEEeCCCcC
Q psy7039 7 IKNPFDEP-GKPTDLEATDWDKDHVDLQWTPPI-SDGGSPITGYVVEMKDKTG-NWE---KA-VVVPAGETSCTVPGLIE 79 (516)
Q Consensus 7 ~~~~~~~p-~~p~~l~~~~~~~~~v~l~W~~p~-~~~~~~i~~Y~v~~~~~~~-~~~---~~-~~~~~~~~~~~i~~l~~ 79 (516)
+++..+.| +||.++++..++++++.|+|.+|. .+.++++.+|.|.|+..+. .+. .. ........++.|.+|++
T Consensus 1 v~T~~~~P~~pP~~v~v~~~~~~si~l~W~~p~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p 80 (109)
T d1va9a1 1 ISTEEAAPDGPPMDVTLQPVTSQSIQVTWKAPKKELQNGVIRGYQIGYRENSPGSNGQYSIVEMKATGDSEVYTLDNLKK 80 (109)
T ss_dssp SCSSCCCCSSCCEEEEEEECSSSEEEEEEECCCSSTTCSCCCEEEEEEEESSTTSCCSCBCCBCCCCSSEEEEEEESCCS
T ss_pred CCCcCCCCCCCCcCcEEEEecCCEEEEEEcCCCCCCCCCcEEEEEEEEeeccccccceeeeeEEecCCCeeEEEECCCCc
Confidence 35666666 599999999999999999999874 3445689999999987654 221 11 12234568999999999
Q ss_pred CCeEEEEEEEecCCCCCCCCCC
Q psy7039 80 GETYQFQVRAVNAAGPGEASKP 101 (516)
Q Consensus 80 ~~~y~~~~~a~n~~g~~~~s~~ 101 (516)
+..|.|+++|.|..|.+.++..
T Consensus 81 ~t~Y~~~V~a~n~~G~g~~S~~ 102 (109)
T d1va9a1 81 FAQYGVVVQAFNRAGTGPSSSE 102 (109)
T ss_dssp SCCEEEEEEEEETTEECCCCCC
T ss_pred ceEEEEEEEEEcCCcCCCCCCC
Confidence 9999999999999998877543
|
| >d1j8ka_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin, different Fn3 modules species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.11 E-value=2.2e-10 Score=87.04 Aligned_cols=80 Identities=23% Similarity=0.371 Sum_probs=67.9
Q ss_pred CCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCC-CeEEeEEeecCCcEEEeCCCcCCCeEEEEEEEecCC
Q psy7039 15 GKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTG-NWEKAVVVPAGETSCTVPGLIEGETYQFQVRAVNAA 93 (516)
Q Consensus 15 ~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~-~~~~~~~~~~~~~~~~i~~l~~~~~y~~~~~a~n~~ 93 (516)
++|.+|++..++.++|.|+|.+|. +.+.+|+++|+...+ .+..........+++.|.+|.+++.|.|++.|.|..
T Consensus 3 d~P~~l~v~~vt~~sv~l~W~~p~----~~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~~~~ 78 (94)
T d1j8ka_ 3 DRPKGLAFTDVDVDSIKIAWESPQ----GQVSRYRVTYSSPEDGIHELFPAPDGEEDTAELQGLRPGSEYTVSVVALHDD 78 (94)
T ss_dssp CCCCCCEEEEEETTEEEEECCCCS----SCCSCEEEEEEETTTEEEEECCCCCSSCCEEEECSCCCCSEEEEEEEECSSS
T ss_pred CCCCCCEEEEecCCEEEEEEeCCC----ccccceEEEEEeecCCCceEEEecCCCccEEEECCCCCCCEEEEEEEEEeCC
Confidence 578999999999999999999974 357899999998766 444444555678999999999999999999999988
Q ss_pred CCCCC
Q psy7039 94 GPGEA 98 (516)
Q Consensus 94 g~~~~ 98 (516)
|.+.+
T Consensus 79 g~S~p 83 (94)
T d1j8ka_ 79 MESQP 83 (94)
T ss_dssp CCCCC
T ss_pred CCcCC
Confidence 87654
|
| >d1v5ja_ b.1.2.1 (A:) KIAA1355 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: KIAA1355 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.10 E-value=1.1e-10 Score=91.16 Aligned_cols=90 Identities=29% Similarity=0.424 Sum_probs=74.6
Q ss_pred CCCCCCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCCCeEEeE-EeecCCcEEEeCCCcCCCeEEEEEEE
Q psy7039 11 FDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAV-VVPAGETSCTVPGLIEGETYQFQVRA 89 (516)
Q Consensus 11 ~~~p~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~~~~~~~-~~~~~~~~~~i~~l~~~~~y~~~~~a 89 (516)
...|.||+++.+. .+.++|.|+|.+|. +.+.+|.+|.|+|+..++.|.... ......++++|.+|.++..|.|+|+|
T Consensus 5 ss~~sPP~~~~~~-~t~~si~l~W~pp~-~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~rV~A 82 (108)
T d1v5ja_ 5 SSGLSPPRGLVAV-RTPRGVLLHWDPPE-LVPKRLDGYVLEGRQGSQGWEVLDPAVAGTETELLVPGLIKDVLYEFRLVA 82 (108)
T ss_dssp CCCCCCCEEEEEE-ECSSSEEEEEECCS-CCSSCCCBEEEEEEETTCCCEEEEEEECSSCCEEECCCCCTTSCEECCBEE
T ss_pred CCCCCcCCCeEEE-EcCCEEEEEEEecc-cCCCceeEEEEEeeeeeeeeeeccccccceeeeEEEEeccCCcEEEEEEEE
Confidence 3457899999875 57889999999985 455679999999998777776554 45567899999999999999999999
Q ss_pred ecCCCCCCCCCCC
Q psy7039 90 VNAAGPGEASKPT 102 (516)
Q Consensus 90 ~n~~g~~~~s~~~ 102 (516)
.|..|.+.++...
T Consensus 83 ~n~~g~s~~S~~~ 95 (108)
T d1v5ja_ 83 FAGSFVSDPSNTA 95 (108)
T ss_dssp EETTEEEEECSCC
T ss_pred EeCCCEeCCcCce
Confidence 9999998876533
|
| >d1fnha2 b.1.2.1 (A:93-182) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin, different Fn3 modules species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.10 E-value=2.3e-10 Score=86.11 Aligned_cols=80 Identities=20% Similarity=0.346 Sum_probs=67.6
Q ss_pred CCCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCC-CeEEeEEeecCCcEEEeCCCcCCCeEEEEEEEecC
Q psy7039 14 PGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTG-NWEKAVVVPAGETSCTVPGLIEGETYQFQVRAVNA 92 (516)
Q Consensus 14 p~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~-~~~~~~~~~~~~~~~~i~~l~~~~~y~~~~~a~n~ 92 (516)
.+||.+|++..++.+++.|+|.+|. +++.+|+|+|...++ .+. ..........+.|.+|+++..|.|+++|.|.
T Consensus 2 ~spP~~l~v~~~~~~si~v~W~~p~----~~~~~Y~i~~~~~~~~~~~-~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~~~ 76 (90)
T d1fnha2 2 VSPPRRARVTDATETTITISWRTKT----ETITGFQVDAVPANGQTPI-QRTIKPDVRSYTITGLQPGTDYKIYLYTLND 76 (90)
T ss_dssp CCCCEEEEEEEECSSEEEEEEECCS----SCCCCEEEEEEESSSSCCE-EEECCTTCSEEEEESCCTTCEEEEEEEEEET
T ss_pred cCcCCCCEEEEecCCEEEEEEECCC----CCCceeEEEEEEccCCceE-EEecCCCccEEEeCCCCCCcEEEEEEEEEeC
Confidence 3689999999999999999999874 458999999998766 444 3345567899999999999999999999998
Q ss_pred CCCCCC
Q psy7039 93 AGPGEA 98 (516)
Q Consensus 93 ~g~~~~ 98 (516)
.|.+.+
T Consensus 77 ~g~s~p 82 (90)
T d1fnha2 77 NARSSP 82 (90)
T ss_dssp TEECCC
T ss_pred CCCcCC
Confidence 887664
|
| >d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Myosin-binding protein C, slow-type species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.09 E-value=1.7e-10 Score=86.79 Aligned_cols=74 Identities=19% Similarity=0.276 Sum_probs=63.2
Q ss_pred CcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCc--eEEeecCCee
Q psy7039 119 STLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGR--ADVQTTKSET 196 (516)
Q Consensus 119 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~--~~~~~~~~~~ 196 (516)
.++.++.+.+|+.+.|.|.+. .|.+.+.|++++..+....+ +.+...+...
T Consensus 5 ~~l~~~~v~~G~~v~l~C~v~---------------------------~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~ 57 (90)
T d1x44a1 5 KQLEDTTAYCGERVELECEVS---------------------------EDDANVKWFKNGEEIIPGPKSRYRIRVEGKKH 57 (90)
T ss_dssp BCCCCEEEETTEEEEEEEECS---------------------------SSSCCCEEEETTEECCCSTTCSEEEEEETTEE
T ss_pred cCCCCEEEeCCCcEEEEEEEC---------------------------CCCceEEEEEeecccCCCCCccEEEEEeCCcc
Confidence 567789999999999999986 47788999999998876544 6666777888
Q ss_pred EEEeccCCCCCCeeEEEEEEcCC
Q psy7039 197 VLDIPFCSRSDTGHYSLTLENNL 219 (516)
Q Consensus 197 ~l~i~~~~~~d~g~Y~c~~~~~~ 219 (516)
.|.|.+++.+|+|.|+|.+.|..
T Consensus 58 ~L~I~~v~~~D~G~Y~C~a~n~~ 80 (90)
T d1x44a1 58 ILIIEGATKADAAEYSVMTTGGQ 80 (90)
T ss_dssp EEEEEEECTTTCSEEEEEETTEE
T ss_pred EEEECccccccCEEEEEEEecce
Confidence 99999999999999999997743
|
| >d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cardiac myosin binding protein C, different domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.09 E-value=2.5e-10 Score=86.58 Aligned_cols=81 Identities=16% Similarity=0.244 Sum_probs=64.8
Q ss_pred CCccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccC-CceEEee
Q psy7039 113 APRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIG-GRADVQT 191 (516)
Q Consensus 113 ~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~-~~~~~~~ 191 (516)
+|.+.......+.+.+|+.+.|.|.+. + |.+.+.|++++..+... .++.+..
T Consensus 5 ~~~f~~~l~~~~~v~~G~~v~l~c~v~--------------------------~-p~~~v~W~k~g~~i~~~~~~~~~~~ 57 (94)
T d1pd6a_ 5 STAFQKKLEPAYQVSKGHKIRLTVELA--------------------------D-HDAEVKWLKNGQEIQMSGSKYIFES 57 (94)
T ss_dssp TSSCSEECCSEEEEETTSCEEEEEECS--------------------------S-SSSCCEEEESSSEECCCSSSSEEEE
T ss_pred CCcEEEeCCCCEEECcCCeEEEEEEEC--------------------------C-CCceEEEEEcCccceeeeeeEeeec
Confidence 344441223346799999999999986 5 78899999999999764 5677777
Q ss_pred cCCeeEEEeccCCCCCCeeEEEEEEcCCC
Q psy7039 192 TKSETVLDIPFCSRSDTGHYSLTLENNLG 220 (516)
Q Consensus 192 ~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g 220 (516)
.+....|.|.++...|+|.|+|.+.|..+
T Consensus 58 ~~~~~~L~I~~~~~~D~G~Y~c~a~n~~~ 86 (94)
T d1pd6a_ 58 IGAKRTLTISQCSLADDAAYQCVVGGEKC 86 (94)
T ss_dssp ETTEEEEEECSCSSSSCEEEEEEETTEEE
T ss_pred cCCeEEeecCCCCceecEEEEEEEeeEEE
Confidence 78889999999999999999999977443
|
| >d1x5ja1 b.1.2.1 (A:8-107) Neogenin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Neogenin species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.09 E-value=2.6e-10 Score=87.67 Aligned_cols=91 Identities=19% Similarity=0.163 Sum_probs=70.8
Q ss_pred CCCCCcceEEEeeeCCeeEEEecCCCCCC---CCceeceEEEEEeCCCCeEEeEEeecCCcEEEeCCCcCCCeEEEEEEE
Q psy7039 13 EPGKPTDLEATDWDKDHVDLQWTPPISDG---GSPITGYVVEMKDKTGNWEKAVVVPAGETSCTVPGLIEGETYQFQVRA 89 (516)
Q Consensus 13 ~p~~p~~l~~~~~~~~~v~l~W~~p~~~~---~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~~~a 89 (516)
++.||.+|++..+++++|.|+|.+|.... ...+..|.|+++..+..............+++|.+|.+++.|.|+++|
T Consensus 1 P~~pP~~v~~~~~s~tsi~v~W~~p~~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a 80 (100)
T d1x5ja1 1 PMMPPVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTKYKNANATTLSYLVTGLKPNTLYEFSVMV 80 (100)
T ss_dssp CCCCCEEEEEEEEETTEEEEEEECTTSCSSSCCCSSCEEEEEECBSSSSSCCCEECCBCSSEEEEESCCTTCEECCEEEE
T ss_pred CCCCCcCeEEEEecCCEEEEEEcCCccccccceeeEEEEEEEeeecCCCcceeEecCCCccEEEECCCCCCCEEEEEEEE
Confidence 46789999999999999999999864222 245678899888765522223333456789999999999999999999
Q ss_pred ecCCCCCCCCCCCc
Q psy7039 90 VNAAGPGEASKPTA 103 (516)
Q Consensus 90 ~n~~g~~~~s~~~~ 103 (516)
.|..|.+.++....
T Consensus 81 ~n~~g~s~~S~~~~ 94 (100)
T d1x5ja1 81 TKGRRSSTWSMTAH 94 (100)
T ss_dssp ECSSCBCCCCCCCC
T ss_pred EeCCcCcCCCCeEE
Confidence 99999988776543
|
| >d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fibroblast growth factor receptor, FGFR species: Human (Homo sapiens), FGFR1 [TaxId: 9606]
Probab=99.09 E-value=1.8e-10 Score=90.17 Aligned_cols=86 Identities=19% Similarity=0.292 Sum_probs=65.3
Q ss_pred ccccEEEEcCCeEEEEEEEeeecCCceEEEECCeecC----CCCc--eE-------EEEcCCeEEEEEcCceecCCceEE
Q psy7039 361 SIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVS----PDGR--IK-------FETSENQTIYRNKSAKRATDSGSY 427 (516)
Q Consensus 361 ~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~----~~~~--~~-------~~~~~~~~~l~i~~~~~~~~~g~y 427 (516)
.+.+..+..|+++.|.|.+.|.|.|.|.|++++.... .... .. .........|.|.++.. .|.|.|
T Consensus 11 ~P~~~tv~~G~~v~l~C~v~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~-~D~G~Y 89 (109)
T d2fdbp2 11 LPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTF-EDAGEY 89 (109)
T ss_dssp CSCCEEECTTCCEEEEEEEECSSCCEEEEEEEC-------------CEEEECCEEEEETTEEEEEEEECSCCG-GGCEEE
T ss_pred CCCCEEEecCCcEEEEEEEEEcCCCeEEEEecCccCCceeccCCceeEeecccceeEEecCCcEEEEECCCCH-HHCeEE
Confidence 3577899999999999999999999999998764321 1110 01 11122346799999999 999999
Q ss_pred EEEEEcCCCceeEEEEEEEe
Q psy7039 428 TIQLVNTVGSDSASCKVYVV 447 (516)
Q Consensus 428 ~c~a~n~~G~~s~s~~l~v~ 447 (516)
+|.|.|..|....++.|+|.
T Consensus 90 ~C~a~N~~G~~~~~~~L~Vl 109 (109)
T d2fdbp2 90 TCLAGNSIGISFHSAWLTVL 109 (109)
T ss_dssp EEEEECSSCEEEEEEEEEEC
T ss_pred EEEEEECCCEEEEEEEEEEC
Confidence 99999999999999988873
|
| >d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Mucosal addressin cell adhesion molecule-1 (MADCAM-1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.09 E-value=2e-10 Score=86.12 Aligned_cols=80 Identities=15% Similarity=0.057 Sum_probs=63.0
Q ss_pred CcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEeecCCeeEE
Q psy7039 119 STLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTTKSETVL 198 (516)
Q Consensus 119 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l 198 (516)
.+...+.+..|+++.|.|.+.. +.|.+.++|++.+.++. ........+.|
T Consensus 8 ~p~~~~~~~~G~~~~l~C~~~~-------------------------g~p~p~v~W~~~~~~~~-----~~~~~~~~~~L 57 (90)
T d1gsma1 8 PPEPVVAVALGASRQLTCRLAC-------------------------ADRGASVQWRGLDTSLG-----AVQSDTGRSVL 57 (90)
T ss_dssp SCCSEEEEETTCCEEEEEEECC-------------------------SSTTCEEEEESSTTTTC-----CEEEESSEEEE
T ss_pred CCCCeEEEEeCCcEEEEEEecC-------------------------CCCccEEEEEEeeeeee-----eeeccCceeeE
Confidence 3444578899999999998741 68899999998776552 22334567899
Q ss_pred EeccCCCCCCeeEEEEEEcCCCceEEEEEe
Q psy7039 199 DIPFCSRSDTGHYSLTLENNLGTATASAHV 228 (516)
Q Consensus 199 ~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~ 228 (516)
.|.+++.+|+|.|+|.+.|..|..+.+..+
T Consensus 58 ~i~~v~~~D~G~Y~C~Asn~~g~~~~s~~l 87 (90)
T d1gsma1 58 TVRNASLSAAGTRVCVGSCGGRTFQHTVQL 87 (90)
T ss_dssp EECSCCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred EcCccChhhCCcEEEEEEeCCCcEEEEEEE
Confidence 999999999999999999988877666543
|
| >d2b5ic1 b.1.2.1 (C:130-224) Cytokine receptor common gamma chain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Cytokine receptor common gamma chain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.09 E-value=8.9e-10 Score=83.58 Aligned_cols=88 Identities=18% Similarity=0.305 Sum_probs=70.5
Q ss_pred CCCCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCC-CeEEeEEeecCCcEEEeCCCcCCCeEEEEEEEec
Q psy7039 13 EPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTG-NWEKAVVVPAGETSCTVPGLIEGETYQFQVRAVN 91 (516)
Q Consensus 13 ~p~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~-~~~~~~~~~~~~~~~~i~~l~~~~~y~~~~~a~n 91 (516)
.|+||.+|++..++++++.|+|.+|. .+.+..|+|+|+..+. .|..... ...+.++|.+|.++..|.|+|+|.+
T Consensus 2 ~P~~P~nl~v~~~~~~~v~l~W~~p~---~~~~~~y~v~y~~~~~~~~~~~~~--~~~~~~~~~~L~p~t~Y~frVRa~~ 76 (95)
T d2b5ic1 2 IPWAPENLTLHKLSESQLELNWNNRF---LNHCLEHLVQYRTDWDHSWTEQSV--DYRHKFSLPSVDGQKRYTFRVRSRF 76 (95)
T ss_dssp ECCCCEEEEEEEEETTEEEEEEECSS---CSTTCEEEEEEEETTCSSCEEEEE--CSSCEEEECSCCTTSCEEEEEEEEC
T ss_pred CCcCCCCCEEEEEeCCEEEEEECCCC---CceeEEEEEEEEcCCCceeeEeee--cccceeEcCCCCCCCEEEEEEEEee
Confidence 59999999999999999999999874 2457899999999777 6766543 3678999999999999999999987
Q ss_pred CCC---CCCCCCCCcce
Q psy7039 92 AAG---PGEASKPTAPI 105 (516)
Q Consensus 92 ~~g---~~~~s~~~~~~ 105 (516)
..+ .+.+|+.+..+
T Consensus 77 ~~~~~~~g~WSeWS~pv 93 (95)
T d2b5ic1 77 NPLCGSAQHWSEWSHPI 93 (95)
T ss_dssp CSSSCCCCCCCCCCCCE
T ss_pred CCCCCCCCCccCCCCce
Confidence 654 34455555433
|
| >d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: High affinity nerve growth factor receptor TrkA, different domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.08 E-value=1.1e-10 Score=90.91 Aligned_cols=82 Identities=26% Similarity=0.395 Sum_probs=66.2
Q ss_pred cCCeEEEEEEEeeecCCceEEEECCeecCCCCceEEEEcC-------CeEEEEEcCceecCCceEEEEEEEcCCCceeEE
Q psy7039 369 AGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSE-------NQTIYRNKSAKRATDSGSYTIQLVNTVGSDSAS 441 (516)
Q Consensus 369 ~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~-------~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s 441 (516)
.++...+.|.+.|.|.|.+.|++++..+..+.+....... ..+.|.|.++.. .|.|.|.|.|.|..|....+
T Consensus 14 ~~~~~ci~~~v~G~P~P~v~W~~ng~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~-~D~G~Y~C~A~N~~G~~~~~ 92 (107)
T d1he7a_ 14 EMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTH-VNNGNYTLLAANPFGQASAS 92 (107)
T ss_dssp CCCEEEEEEEECCSSCCEEEEEETTEECCCCSSEEEEEECCCSSCCCEEEEEEEESCCG-GGCEEEEEEEEETTEEEEEE
T ss_pred EEEEEEEEEEEEEecCCeEEEEEeeeEccCccceeeeeeeeeeeeeccceEEEECcccH-HHCcEEEEEEEeCCCEEEEE
Confidence 3344456678999999999999999998776655544322 225799999999 99999999999999999999
Q ss_pred EEEEEecCCC
Q psy7039 442 CKVYVVDKPS 451 (516)
Q Consensus 442 ~~l~v~~~p~ 451 (516)
+.|.|..+|.
T Consensus 93 i~v~v~~~P~ 102 (107)
T d1he7a_ 93 IMAAFMDNPF 102 (107)
T ss_dssp EEECCCSCTT
T ss_pred EEEEEEcCCC
Confidence 9999987763
|
| >d1l6za2 b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.08 E-value=1.8e-10 Score=87.87 Aligned_cols=84 Identities=25% Similarity=0.362 Sum_probs=70.2
Q ss_pred ccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCce-eEE
Q psy7039 363 RDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSD-SAS 441 (516)
Q Consensus 363 ~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~-s~s 441 (516)
.+..+.+|+.+.|.|.+.+ +++.+.|++++..+..+.++.+.. ....|.|.++.. +|.|.|+|.|.|..|.. +..
T Consensus 11 ~~~~v~~g~~v~l~C~~~~-~~~~v~W~~~~~~l~~~~~~~~~~--~~~~L~I~~v~~-~d~G~Y~C~a~N~~g~~~S~~ 86 (96)
T d1l6za2 11 TNTTVKELDSVTLTCLSND-IGANIQWLFNSQSLQLTERMTLSQ--NNSILRIDPIKR-EDAGEYQCEISNPVSVRRSNS 86 (96)
T ss_dssp SCSEECTTSCEEEEECCCC-SSCEEEEEETTEECCCCTTEEEET--TTTEEEECSCCG-GGCEEEEEEEESSSCCEECCC
T ss_pred CceEEeCCCeEEEEEccCC-CCCCEEEEEeeeecccccceeccC--CceEEEEeccch-hhceEEEEEEEeCCCCeEEEe
Confidence 4457889999999999866 567999999999998877777654 334699999999 99999999999999985 556
Q ss_pred EEEEEecCC
Q psy7039 442 CKVYVVDKP 450 (516)
Q Consensus 442 ~~l~v~~~p 450 (516)
+.|+|..+|
T Consensus 87 ~~L~V~~~P 95 (96)
T d1l6za2 87 IKLDIIFDP 95 (96)
T ss_dssp CEEEECCSC
T ss_pred EEEEEEcCC
Confidence 889887665
|
| >d2cuha1 b.1.2.1 (A:8-109) Tenascin-X {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Tenascin-X species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.08 E-value=2.2e-10 Score=88.45 Aligned_cols=80 Identities=20% Similarity=0.427 Sum_probs=67.8
Q ss_pred CCCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCC-CeEEeEEeecCCcEEEeCCCcCCCeEEEEEEEecC
Q psy7039 14 PGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTG-NWEKAVVVPAGETSCTVPGLIEGETYQFQVRAVNA 92 (516)
Q Consensus 14 p~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~-~~~~~~~~~~~~~~~~i~~l~~~~~y~~~~~a~n~ 92 (516)
|++|.+|++..++++++.|+|.+|. +.+.+|+|+|...++ .+.. ......+++.|.+|.+++.|.|+++|.+.
T Consensus 1 P~~P~~l~~~~~t~~si~l~W~~p~----~~i~~Y~v~~~~~~~~~~~~--~~~~~~~~~~l~~L~p~t~Y~~~V~a~~~ 74 (102)
T d2cuha1 1 PDGPTQLRALNLTEGFAVLHWKPPQ----NPVDTYDIQVTAPGAPPLQA--ETPGSAVDYPLHDLVLHTNYTATVRGLRG 74 (102)
T ss_dssp CSSCEEEECCCCSSSCEEEEEECCS----SCCSEEEEEEECSSSCCEEE--EEETTCSEEEECSCCSSSEEEEEEEEEET
T ss_pred CcCCCccEEEEeCCCEEEEEEEeee----ccceeeEEEEEeccccceee--eeeeeeeeEEEccEEeeEEEEEEEEEEeC
Confidence 7899999999999999999999874 458899999988766 4433 34567889999999999999999999998
Q ss_pred CCCCCCC
Q psy7039 93 AGPGEAS 99 (516)
Q Consensus 93 ~g~~~~s 99 (516)
.|.+.+.
T Consensus 75 ~~~s~~~ 81 (102)
T d2cuha1 75 PNLTSPA 81 (102)
T ss_dssp TEECCCE
T ss_pred CCCcCCE
Confidence 7776543
|
| >d1tdqa1 b.1.2.1 (A:1-93) Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Tenascin species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.08 E-value=3.8e-10 Score=85.39 Aligned_cols=82 Identities=18% Similarity=0.284 Sum_probs=71.0
Q ss_pred CCCCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCC-CeEEeEEeecCCcEEEeCCCcCCCeEEEEEEEec
Q psy7039 13 EPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTG-NWEKAVVVPAGETSCTVPGLIEGETYQFQVRAVN 91 (516)
Q Consensus 13 ~p~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~-~~~~~~~~~~~~~~~~i~~l~~~~~y~~~~~a~n 91 (516)
++++|.+|.+..++.+++.|+|.+|. +.+.+|.|+|+..++ .+........+.++++|.+|+++..|.|+++|.+
T Consensus 3 v~~~P~~l~v~~v~~~si~v~W~~p~----~~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~v~V~a~~ 78 (93)
T d1tdqa1 3 VIDGPTQILVRDVSDTVAFVEWTPPR----AKVDFILLKYGLVGGEGGKTTFRLQPPLSQYSVQALRPGSRYEVSISAVR 78 (93)
T ss_dssp SSCCCEEEEEEEECSSCEEEEEECCS----SCCSEEEEEEEESSSSCCCEEEEECTTCSEEEECSCCTTCEEEEEEEEEE
T ss_pred cCCcCCCCEEEEeCCCEEEEEEEccc----cCCCceEEEEEeccCcceeeEEEeCCCceEEEEeCcccceEEEEEEEEEe
Confidence 46899999999999999999999874 458899999998766 5655556777889999999999999999999999
Q ss_pred CCCCCCC
Q psy7039 92 AAGPGEA 98 (516)
Q Consensus 92 ~~g~~~~ 98 (516)
..|.+.+
T Consensus 79 ~~g~s~~ 85 (93)
T d1tdqa1 79 GTNESDA 85 (93)
T ss_dssp TTEECCC
T ss_pred CCCCcCC
Confidence 9887765
|
| >d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Myosin-binding protein C, slow-type species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.07 E-value=5.1e-10 Score=84.05 Aligned_cols=83 Identities=20% Similarity=0.362 Sum_probs=68.4
Q ss_pred cccccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCC--ceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCc
Q psy7039 360 LSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDG--RIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGS 437 (516)
Q Consensus 360 ~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~--~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~ 437 (516)
..+.+..+..|+++.|.|.+ +.|.+.+.|++++..+..+. ++.+...++...|.|.++.. +|+|.|+|.|.|
T Consensus 5 ~~l~~~~v~~G~~v~l~C~v-~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~-~D~G~Y~C~a~n---- 78 (90)
T d1x44a1 5 KQLEDTTAYCGERVELECEV-SEDDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATK-ADAAEYSVMTTG---- 78 (90)
T ss_dssp BCCCCEEEETTEEEEEEEEC-SSSSCCCEEEETTEECCCSTTCSEEEEEETTEEEEEEEEECT-TTCSEEEEEETT----
T ss_pred cCCCCEEEeCCCcEEEEEEE-CCCCceEEEEEeecccCCCCCccEEEEEeCCccEEEECcccc-ccCEEEEEEEec----
Confidence 35678899999999999998 56888999999998875543 46667777788999999999 999999999966
Q ss_pred eeEEEEEEEec
Q psy7039 438 DSASCKVYVVD 448 (516)
Q Consensus 438 ~s~s~~l~v~~ 448 (516)
...++.|+|..
T Consensus 79 ~~~~a~l~V~~ 89 (90)
T d1x44a1 79 GQSSAKLSVDL 89 (90)
T ss_dssp EEEEEEEEEEC
T ss_pred ceEEEEEEEEE
Confidence 45567777753
|
| >d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: High affinity nerve growth factor receptor TrkA, different domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.07 E-value=3.3e-11 Score=91.20 Aligned_cols=87 Identities=13% Similarity=0.161 Sum_probs=68.7
Q ss_pred CCccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEeec
Q psy7039 113 APRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTT 192 (516)
Q Consensus 113 ~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~ 192 (516)
.|.|. ..+.+..+.+|+.+.|.|.+. |.|.+.+.|++++..+....+ ....
T Consensus 2 ~P~i~-~~~~~~~v~~G~~v~l~C~~~--------------------------g~P~p~v~W~~~~~~~~~~~~--~~~~ 52 (92)
T d2ifga1 2 VPTLK-VQVPNASVDVGDDVLLRCQVE--------------------------GRGLEQAGWILTELEQSATVM--KSGG 52 (92)
T ss_dssp CCEEE-EECCSSCCBTTCCEEEEEEEE--------------------------CSSCCCCCEEESCCCSSEEEC--CCCC
T ss_pred CCEEE-EeCCCEEEeCCCEEEEeeecc--------------------------CCCCcEEEEEECCceeeeeee--eeee
Confidence 35555 455667889999999999999 999999999999876653221 2224
Q ss_pred CCeeEEEeccCCCCCCe-eEEEEEEcCCCceEEEEEe
Q psy7039 193 KSETVLDIPFCSRSDTG-HYSLTLENNLGTATASAHV 228 (516)
Q Consensus 193 ~~~~~l~i~~~~~~d~g-~Y~c~~~~~~g~~~~~~~~ 228 (516)
.....|.|.+++.+|.| .|+|.+.|..|....+..+
T Consensus 53 ~~~~~L~i~~~~~~d~G~~Y~C~a~N~~G~~~~s~~l 89 (92)
T d2ifga1 53 LPSLGLTLANVTSDLNRKNVTCWAENDVGRAEVSVQV 89 (92)
T ss_dssp SSEEEEEEESCCSTTTTCCEEECCEETTEECCEEECC
T ss_pred ccceeEEEccccccccceEEEEEEEcCCCEEEEEEEE
Confidence 55679999999999999 6999999999988766543
|
| >d1bqua1 b.1.2.1 (A:5-99) Cytokine receptor gp130 cytokine-binding domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Cytokine receptor gp130 cytokine-binding domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.07 E-value=1.2e-10 Score=88.70 Aligned_cols=83 Identities=14% Similarity=0.071 Sum_probs=69.3
Q ss_pred CCCCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCC-CeEEeEEeecCCcEEEeCCCcCCCeEEEEEEEec
Q psy7039 13 EPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTG-NWEKAVVVPAGETSCTVPGLIEGETYQFQVRAVN 91 (516)
Q Consensus 13 ~p~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~-~~~~~~~~~~~~~~~~i~~l~~~~~y~~~~~a~n 91 (516)
+|++|.+++|...+..++.|+|.+|. +++. ..+|.|.++..++ .|..........+.+.+.+|.++..|.|++.|.|
T Consensus 3 PP~~P~n~~~~~~~~~si~~~W~p~~-~~~~-~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~Y~f~V~A~N 80 (95)
T d1bqua1 3 PPEKPKNLSCIVNEGKKMRCEWDGGR-ETHL-ETNFTLKSEWATHKFADCKAKRDTPTSCTVDYSTVYFVNIEVWVEAEN 80 (95)
T ss_dssp CCCCCEEEEEEEETTSCCEEEEECCS-CCSS-CCEEEEEEEETTEECCCEECCSSCTTEEECSSCCCTTSCEEEEEEEEE
T ss_pred CcCCCeeeEEEEccCCEEEEEEeCcc-cCCC-ceEEEEEEEEcccceeEeecccccceeeeeeeecCCCcEEEEEEEEEe
Confidence 69999999999999999999999984 5555 4789999998766 4544444455677788889999999999999999
Q ss_pred CCCCCC
Q psy7039 92 AAGPGE 97 (516)
Q Consensus 92 ~~g~~~ 97 (516)
..|.+.
T Consensus 81 ~~G~s~ 86 (95)
T d1bqua1 81 ALGKVT 86 (95)
T ss_dssp TTEEEE
T ss_pred CCcccc
Confidence 999775
|
| >d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Tyrosine-protein kinase receptor tyro3, second domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.06 E-value=1.7e-10 Score=85.43 Aligned_cols=73 Identities=12% Similarity=0.116 Sum_probs=58.7
Q ss_pred CccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCce-eeEEeeCCeeeccCCceEEeec
Q psy7039 114 PRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFL-NHGWSINGQVCQIGGRADVQTT 192 (516)
Q Consensus 114 p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~i~W~~~~~~~~~~~~~~~~~~ 192 (516)
|.|. ..+.++.+.+|+++.|.|.+. |.|.| ++.|++++..+....
T Consensus 2 P~f~-~~P~~~~v~~G~~~~l~C~~~--------------------------g~P~P~~i~W~k~g~~i~~~~------- 47 (85)
T d1rhfa2 2 PFFT-VEPKDLAVPPNAPFQLSCEAV--------------------------GPPEPVTIVWWRGTTKIGGPA------- 47 (85)
T ss_dssp CEEE-ECCCCEEECTTCCEEEEEEEE--------------------------CSSSCCEEEEEETTEECSCSE-------
T ss_pred CcEE-EeCCcEEEcCCCEEEEEEEEe--------------------------cCCcceEEEEEECCEECCCCC-------
Confidence 4455 556778899999999999999 99987 899999998886432
Q ss_pred CCeeEEEeccCCCCCCeeEEEEEEcCCCce
Q psy7039 193 KSETVLDIPFCSRSDTGHYSLTLENNLGTA 222 (516)
Q Consensus 193 ~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~ 222 (516)
...+.|.....+|+|.|+|.+.|..|..
T Consensus 48 --~~~~~l~~~~~~d~G~Y~C~A~N~~G~~ 75 (85)
T d1rhfa2 48 --PSPSVLNVTGVTQSTMFSCEAHNLKGLA 75 (85)
T ss_dssp --ESSEEEEECCCSSCEEEEEEEEETTEEE
T ss_pred --CcceEEecCCccccEEEEEEEEcCCCcE
Confidence 2245566667789999999999999854
|
| >d1k85a_ b.1.2.1 (A:) Fibronectin type III domain from chitinase A1. {Bacillus circulans [TaxId: 1397]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin type III domain from chitinase A1. species: Bacillus circulans [TaxId: 1397]
Probab=99.06 E-value=4.4e-10 Score=84.00 Aligned_cols=80 Identities=34% Similarity=0.508 Sum_probs=63.4
Q ss_pred CCCCCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCCCeEEeEEeecCCcEEEeCCCcCCCeEEEEEEEec
Q psy7039 12 DEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVVVPAGETSCTVPGLIEGETYQFQVRAVN 91 (516)
Q Consensus 12 ~~p~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~~~a~n 91 (516)
..|++|.+|.+..++.++|.|+|.+|. ++ ..+.+|.|.+.. . .. .....+++++.+|.++..|.|+|+|.|
T Consensus 2 ~AP~~P~~l~~~~~~~~sv~lsW~~p~-~~-~~i~~Y~i~~~~--~---~~--~~~~~t~~~~~~L~p~t~Y~~~V~A~n 72 (88)
T d1k85a_ 2 MAPTAPTNLASTAQTTSSITLSWTAST-DN-VGVTGYDVYNGT--A---LA--TTVTGTTATISGLAADTSYTFTVKAKD 72 (88)
T ss_dssp CSCCCCEEEEEEEECSSCEEEEEECCS-CC-SSEEEEEEEESS--S---EE--EEESSSEEEECCCCSSCEEEEEEEEEE
T ss_pred cCcCCCCCcEEEEecCCEEEEEEeCCC-CC-CCEEEEEEEccc--e---EE--EecCCCEEEECCCCCCCEEEEEEEEEE
Confidence 458999999999999999999999985 33 348899987532 1 11 123678999999999999999999999
Q ss_pred CCC-CCCCCC
Q psy7039 92 AAG-PGEASK 100 (516)
Q Consensus 92 ~~g-~~~~s~ 100 (516)
..| .+.++.
T Consensus 73 ~~G~~s~~S~ 82 (88)
T d1k85a_ 73 AAGNVSAASN 82 (88)
T ss_dssp TTTEECCCCC
T ss_pred CCCCcCCCCc
Confidence 998 455543
|
| >d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Mucosal addressin cell adhesion molecule-1 (MADCAM-1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.06 E-value=5.1e-10 Score=83.83 Aligned_cols=79 Identities=9% Similarity=0.102 Sum_probs=65.5
Q ss_pred cccEEEEcCCeEEEEEEEe-eecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeE
Q psy7039 362 IRDMTVLAGEEFTITVPFS-GRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSA 440 (516)
Q Consensus 362 ~~~~~v~~g~~~~l~C~~~-g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~ 440 (516)
.....+..|+++.|.|.+. |.|.+.|.|.+.+..+. ........+.|.|.++.. .|+|.|+|.|.|..|..+.
T Consensus 10 ~~~~~~~~G~~~~l~C~~~~g~p~p~v~W~~~~~~~~-----~~~~~~~~~~L~i~~v~~-~D~G~Y~C~Asn~~g~~~~ 83 (90)
T d1gsma1 10 EPVVAVALGASRQLTCRLACADRGASVQWRGLDTSLG-----AVQSDTGRSVLTVRNASL-SAAGTRVCVGSCGGRTFQH 83 (90)
T ss_dssp CSEEEEETTCCEEEEEEECCSSTTCEEEEESSTTTTC-----CEEEESSEEEEEECSCCG-GGCEEEEEEEEETTEEEEE
T ss_pred CCeEEEEeCCcEEEEEEecCCCCccEEEEEEeeeeee-----eeeccCceeeEEcCccCh-hhCCcEEEEEEeCCCcEEE
Confidence 3456788999999999885 78899999998776542 123345667899999999 9999999999999999888
Q ss_pred EEEEEE
Q psy7039 441 SCKVYV 446 (516)
Q Consensus 441 s~~l~v 446 (516)
++.|.|
T Consensus 84 s~~l~V 89 (90)
T d1gsma1 84 TVQLLV 89 (90)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 888877
|
| >d1qr4a1 b.1.2.1 (A:1-87) Tenascin {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Tenascin species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=99.05 E-value=5.5e-10 Score=83.31 Aligned_cols=79 Identities=23% Similarity=0.440 Sum_probs=67.2
Q ss_pred CCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCCCeEEeEEeecCCcEEEeCCCcCCCeEEEEEEEecCCC
Q psy7039 15 GKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVVVPAGETSCTVPGLIEGETYQFQVRAVNAAG 94 (516)
Q Consensus 15 ~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~~~a~n~~g 94 (516)
++|.+|++..++++++.|+|++|. +.+.+|+|+|...+..+... ......+++.|.+|.|+..|.|++.|.+..|
T Consensus 1 DaP~~l~v~~~t~~sv~v~W~~p~----~~~~~Y~v~~~~~~~~~~~~-~~~~~~~~~~~~~L~p~t~Y~v~V~a~~~~~ 75 (87)
T d1qr4a1 1 DNPKDLEVSDPTETTLSLRWRRPV----AKFDRYRLTYVSPSGKKNEM-EIPVDSTSFILRGLDAGTEYTISLVAEKGRH 75 (87)
T ss_dssp CCCEEEEEESCCSSEEEEEEECCS----SCCSEEEEEEECTTCCEEEE-EECTTCSEEEEESCCSSCEEEEEEEEESSSC
T ss_pred CcCcCcEEEEecCCEEEEEEECCC----CCcceeEEEeecCCcceeEE-eCCCCcCEEEECCCCcCCEEEEEEEEEcCCC
Confidence 579999999999999999999974 35889999999877644333 4556789999999999999999999999988
Q ss_pred CCCC
Q psy7039 95 PGEA 98 (516)
Q Consensus 95 ~~~~ 98 (516)
.+.+
T Consensus 76 ~s~~ 79 (87)
T d1qr4a1 76 KSKP 79 (87)
T ss_dssp BCCC
T ss_pred CccC
Confidence 7765
|
| >d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cardiac myosin binding protein C, different domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.05 E-value=8e-10 Score=86.48 Aligned_cols=87 Identities=14% Similarity=0.140 Sum_probs=68.8
Q ss_pred ccccEEEEcCCeEEEEEEEeeec---CCceEEEECCeecC---CCCceEEEE------cCCeEEEEEcCceecCCceEEE
Q psy7039 361 SIRDMTVLAGEEFTITVPFSGRP---KPTPIWTVNGDEVS---PDGRIKFET------SENQTIYRNKSAKRATDSGSYT 428 (516)
Q Consensus 361 ~~~~~~v~~g~~~~l~C~~~g~p---~~~i~W~~~~~~l~---~~~~~~~~~------~~~~~~l~i~~~~~~~~~g~y~ 428 (516)
.+.+..+..|+++.|.|.+.|.| .|.|.|++++.... ...++.... ......|.|.++.. .|.|.|+
T Consensus 10 ~P~~~~v~~G~~v~l~C~v~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~-~D~G~Y~ 88 (110)
T d2avga1 10 RPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQP-AFTGGYR 88 (110)
T ss_dssp CCCCEEEETTSEEEEEEEEECCSCSSSCEEEEECSTTCCSTTTCSSSEEEEEEEETTTTEEEEEEEEESCCT-TCCEEEE
T ss_pred CCCeEEEECCCCEEEEEeecCCCCCCCCEEEEEeCceeeecccCCceeEeeeeeEEecccCEEEEEEeccCH-HHCcEEE
Confidence 45678999999999999999998 56899999875331 122333221 11235799999999 9999999
Q ss_pred EEEEcCCCceeEEEEEEEec
Q psy7039 429 IQLVNTVGSDSASCKVYVVD 448 (516)
Q Consensus 429 c~a~n~~G~~s~s~~l~v~~ 448 (516)
|.|.|..|..+.++.|.|..
T Consensus 89 C~a~N~~G~~~~~~~L~V~~ 108 (110)
T d2avga1 89 CEVSTKDKFDCSNFNLTVHE 108 (110)
T ss_dssp EEEEETTEEEEEEEEEEEES
T ss_pred EEEEECCCeEEEEEEEEEEe
Confidence 99999999999999999975
|
| >d2b5ib2 b.1.2.1 (B:104-207) Interleukin-2 receptor beta chain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Interleukin-2 receptor beta chain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.05 E-value=8.2e-10 Score=85.42 Aligned_cols=96 Identities=13% Similarity=0.154 Sum_probs=75.3
Q ss_pred CCCCCcceEEEeeeCCeeEEEecCCCCCCC-CceeceEEEEEeCCC--CeEEeEEeecCCcEEEeCCCcCCCeEEEEEEE
Q psy7039 13 EPGKPTDLEATDWDKDHVDLQWTPPISDGG-SPITGYVVEMKDKTG--NWEKAVVVPAGETSCTVPGLIEGETYQFQVRA 89 (516)
Q Consensus 13 ~p~~p~~l~~~~~~~~~v~l~W~~p~~~~~-~~i~~Y~v~~~~~~~--~~~~~~~~~~~~~~~~i~~l~~~~~y~~~~~a 89 (516)
.+.||.+|++..++++++.|+|..|..++. ..+..|.+++...+. .+........+..++.|.+|++++.|.|+|+|
T Consensus 2 rl~pP~~l~v~~~~~~s~~l~W~~p~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~rVra 81 (104)
T d2b5ib2 2 RLMAPISLQVVHVETHRCNISWEISQASHYFERHLEFEARTLSPGHTWEEAPLLTLKQKQEWICLETLTPDTQYEFQVRV 81 (104)
T ss_dssp CCCCCEEEEEEEECSSCEEEEEECCSCCGGGTTCEEEEEEEECTTSCSTTSCCEEECSCCCEEEECSCCTTCEEEEEEEE
T ss_pred ccCCCCCcEEEEEeCCEEEEEEccccccccccceeEEEEEEecccccceeeeEEecCCCcEEEEECCCCCCCEEEEEEEE
Confidence 478999999999999999999999864433 446789999987655 33344455567889999999999999999999
Q ss_pred ecCCCC-CCCCCCCcceEec
Q psy7039 90 VNAAGP-GEASKPTAPIVAK 108 (516)
Q Consensus 90 ~n~~g~-~~~s~~~~~~~~~ 108 (516)
.|..|. +.+|..+..+...
T Consensus 82 ~~~~g~~g~wS~wS~~v~~~ 101 (104)
T d2b5ib2 82 KPLQGEFTTWSPWSQPLAFR 101 (104)
T ss_dssp EESCCSSCCCCCCCCCEEEE
T ss_pred EECCCCCCCCCCCcCCEEEE
Confidence 998874 5566666555544
|
| >d1bqua2 b.1.2.1 (A:100-214) Cytokine receptor gp130 cytokine-binding domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Cytokine receptor gp130 cytokine-binding domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.05 E-value=2.4e-10 Score=90.40 Aligned_cols=97 Identities=22% Similarity=0.326 Sum_probs=75.6
Q ss_pred CCCCCcceEEEe--eeCCeeEEEecCCCCCCCCceeceEEEEEeCCC-CeEEeEE--eecCCcEEEeCCCcCCCeEEEEE
Q psy7039 13 EPGKPTDLEATD--WDKDHVDLQWTPPISDGGSPITGYVVEMKDKTG-NWEKAVV--VPAGETSCTVPGLIEGETYQFQV 87 (516)
Q Consensus 13 ~p~~p~~l~~~~--~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~-~~~~~~~--~~~~~~~~~i~~l~~~~~y~~~~ 87 (516)
+|+||.++.+.. ..+++|.|+|++|. +.++.+.+|.|+|+...+ .|..... .....+++.|.+|.++..|.|+|
T Consensus 4 kP~pP~~~~v~~~~~~~~si~v~W~~p~-~~~~~~~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~t~Y~~~V 82 (115)
T d1bqua2 4 KPNPPHNLSVINSEELSSILKLTWTNPS-IKSVIILKYNIQYRTKDASTWSQIPPEDTASTRSSFTVQDLKPFTEYVFRI 82 (115)
T ss_dssp ECCCCEEEEEECC--CCSCEEEEEECCG-GGGTSCEEEEEEEEETTCSSCEECCGGGGCSCCSEEEECSCCSSEEEEEEE
T ss_pred ECCCCCCCEEEEeccCCCEEEEEEeecc-ccccceeeeeeeeeeeeeeeeeccccccccccccEEeeCCCccCcEEEEEE
Confidence 478999998864 55788999999985 445678999999998766 6654432 23567899999999999999999
Q ss_pred EEecCCCCCCCCCCCcceEeccC
Q psy7039 88 RAVNAAGPGEASKPTAPIVAKPK 110 (516)
Q Consensus 88 ~a~n~~g~~~~s~~~~~~~~~~~ 110 (516)
+|.|..|.+.++..+..+.....
T Consensus 83 ~a~~~~G~g~~S~~S~~~~~~T~ 105 (115)
T d1bqua2 83 RCMKEDGKGYWSDWSEEASGITY 105 (115)
T ss_dssp EEEETTSCSCCCCCCCCEEEEEC
T ss_pred EEEeCCCccCCcCCcCCEEEECC
Confidence 99999999887776655555443
|
| >d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Neural cell adhesion molecule (NCAM) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.05 E-value=9.5e-10 Score=83.86 Aligned_cols=85 Identities=18% Similarity=0.281 Sum_probs=66.8
Q ss_pred cccEEEEcCCeEEEEEEEeeecC-CceEEEEC-Ceec-CCCCceEEE-EcCCeEEEEEcCceecCCceEEEEEEEcCCCc
Q psy7039 362 IRDMTVLAGEEFTITVPFSGRPK-PTPIWTVN-GDEV-SPDGRIKFE-TSENQTIYRNKSAKRATDSGSYTIQLVNTVGS 437 (516)
Q Consensus 362 ~~~~~v~~g~~~~l~C~~~g~p~-~~i~W~~~-~~~l-~~~~~~~~~-~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~ 437 (516)
+....+..|+.+.|.|.+.|.|+ +.+.|+++ +..+ ....++.+. .......|.|.++.. .|+|.|+|.|.|..|.
T Consensus 7 P~~~~v~~G~~~~l~C~v~g~p~~~~v~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~I~~~~~-~D~G~Y~C~a~N~~G~ 85 (97)
T d1epfa1 7 PSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANI-DDAGIYKCVVTAEDGT 85 (97)
T ss_dssp SSSEEEETTCCEEEEEEECCCSCCCEEEEECTTSCEECCBSSSEEEEEEETTEEEEEECSCCG-GGCEEEEEEEEETTTE
T ss_pred CCCEEEccCCcEEEEEEEEeccCCCEEEEEEeeeeeeeeccccEEEEeecCcceEEEcccCch-hhceEEEEEEEeCCCc
Confidence 45678999999999999999986 69999984 4444 334555544 345567899999999 9999999999999997
Q ss_pred e-eEEEEEEEe
Q psy7039 438 D-SASCKVYVV 447 (516)
Q Consensus 438 ~-s~s~~l~v~ 447 (516)
. +.++.|.|.
T Consensus 86 ~~~~tv~l~V~ 96 (97)
T d1epfa1 86 QSEATVNVKIF 96 (97)
T ss_dssp EEEEEEEEEEE
T ss_pred EEEEEEEEEEE
Confidence 4 456777664
|
| >d1fnfa1 b.1.2.1 (A:1142-1235) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin, different Fn3 modules species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.04 E-value=5.5e-10 Score=84.61 Aligned_cols=83 Identities=24% Similarity=0.353 Sum_probs=66.0
Q ss_pred CCCCCcceEEEeeeCC-eeEEEecCCCCCCCCceeceEEEEEeCCC-C-eEEeEEeecCCcEEEeCCCcCCCeEEEEEEE
Q psy7039 13 EPGKPTDLEATDWDKD-HVDLQWTPPISDGGSPITGYVVEMKDKTG-N-WEKAVVVPAGETSCTVPGLIEGETYQFQVRA 89 (516)
Q Consensus 13 ~p~~p~~l~~~~~~~~-~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~-~-~~~~~~~~~~~~~~~i~~l~~~~~y~~~~~a 89 (516)
+++||.+|++..+.+. .+.|+|.+|. +..|.+|+|+|...++ . ...........++++|.+|.+++.|.+++.|
T Consensus 1 P~~PP~~l~v~~~~~ts~i~v~W~~p~---~~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~v~V~a 77 (94)
T d1fnfa1 1 PLSPPTNLHLEANPDTGVLTVSWERST---TPDITGYRITTTPTNGQQGNSLEEVVHADQSSCTFDNLSPGLEYNVSVYT 77 (94)
T ss_dssp CCCCCEEEEEEECSSSSCEEEEEECCS---CSSCCEEEEEEEETTTCSSCCEEEEECTTCCEEECCCCCTTSCEEEEEEE
T ss_pred CCCcCcCcEEEEecCCCEEEEEeeCCC---CCCeeEEEEEEEEecccCceEEEEEeCCCccEEEECCCCCCCEEEEEEEE
Confidence 4679999999988765 5899999873 2348999999998654 3 3344455667899999999999999999999
Q ss_pred ecCCCCCCC
Q psy7039 90 VNAAGPGEA 98 (516)
Q Consensus 90 ~n~~g~~~~ 98 (516)
.|..|.+.+
T Consensus 78 ~~~~g~s~p 86 (94)
T d1fnfa1 78 VKDDKESVP 86 (94)
T ss_dssp EETTEECCC
T ss_pred EcCCCEeCC
Confidence 998886653
|
| >d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=99.04 E-value=7e-11 Score=91.75 Aligned_cols=79 Identities=13% Similarity=0.037 Sum_probs=62.3
Q ss_pred cccEEEEcCCeEEEEEEE-eeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeE
Q psy7039 362 IRDMTVLAGEEFTITVPF-SGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSA 440 (516)
Q Consensus 362 ~~~~~v~~g~~~~l~C~~-~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~ 440 (516)
...+.+.+|+.+.|.|.+ .+.|.+.+.|++++..+................|.|.++.. .|.|.|+|.|.|..|..+.
T Consensus 11 ~~~v~v~eG~~~~l~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~v~~-~D~G~Y~C~a~N~~g~~~~ 89 (105)
T d1cs6a2 11 RDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTEA-SDLGNYSCFATSHIDFITK 89 (105)
T ss_dssp CCCEEEETTSCEEECCCCCSEESCCEEEEEESSTTCBCCCCSSEEECTTTCCEEESSCCG-GGCEEEEEEEEEEETTEEE
T ss_pred CCCEEEeCCCeEEEEEEccCCCCCCEEEEEEeeccccccccceeeeecCCCEEeeccccc-ccCcEEEEEEEECCCCEEE
Confidence 455789999999999997 78999999999998766433222222333345799999999 9999999999999998665
Q ss_pred E
Q psy7039 441 S 441 (516)
Q Consensus 441 s 441 (516)
+
T Consensus 90 ~ 90 (105)
T d1cs6a2 90 S 90 (105)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >d1x4ya1 b.1.2.1 (A:8-108) Brother of CDO precursor (BOC) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Brother of CDO precursor (BOC) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.04 E-value=5.6e-10 Score=85.92 Aligned_cols=89 Identities=18% Similarity=0.254 Sum_probs=72.1
Q ss_pred CCCCCcceEEEeeeCCeeEEEecCC-CCCCCCceeceEEEEEeCCC-Ce--EEeEEeecCCcEEEeCCCcCCCeEEEEEE
Q psy7039 13 EPGKPTDLEATDWDKDHVDLQWTPP-ISDGGSPITGYVVEMKDKTG-NW--EKAVVVPAGETSCTVPGLIEGETYQFQVR 88 (516)
Q Consensus 13 ~p~~p~~l~~~~~~~~~v~l~W~~p-~~~~~~~i~~Y~v~~~~~~~-~~--~~~~~~~~~~~~~~i~~l~~~~~y~~~~~ 88 (516)
++.+|.++.+..+++++|.|+|..| ....++.+.+|.|.|+..++ .+ ...........++.|.+|+++..|.|+++
T Consensus 1 P~~~P~~~~~~~~s~tsi~v~W~~~~~~~~~~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~v~ 80 (101)
T d1x4ya1 1 PVAGPYITFTDAVNETTIMLKWMYIPASNNNTPIHGFYIYYRPTDSDNDSDYKKDMVEGDRYWHSISHLQPETSYDIKMQ 80 (101)
T ss_dssp CCSCCEEEEEECSSSSCEEEEEECCCTTSCCCCCCEEEEEECCTTSCSGGGCCCEEEETTCCEEEECSCCTTCEEEEEEE
T ss_pred CCCCCcccEEEEEcCCEEEEEEecCcccccccceEEEEEEeeeccceeeeeeeEEEEcCCeeEEEEcCCCCCCEEEEEEE
Confidence 5789999999999999999999864 34555789999999997544 22 22223456778999999999999999999
Q ss_pred EecCCCCCCCCCC
Q psy7039 89 AVNAAGPGEASKP 101 (516)
Q Consensus 89 a~n~~g~~~~s~~ 101 (516)
|.|..|.+.+|..
T Consensus 81 a~n~~G~s~~S~~ 93 (101)
T d1x4ya1 81 CFNEGGESEFSNV 93 (101)
T ss_dssp EECTTCCCCCCCC
T ss_pred EEcCCCCCCCCCc
Confidence 9999999887643
|
| >d1tdqa3 b.1.2.1 (A:186-271) Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Tenascin species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.03 E-value=6.8e-10 Score=82.56 Aligned_cols=80 Identities=28% Similarity=0.412 Sum_probs=66.6
Q ss_pred CCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCCCeEEeEEeecCCcEEEeCCCcCCCeEEEEEEEecCCC
Q psy7039 15 GKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVVVPAGETSCTVPGLIEGETYQFQVRAVNAAG 94 (516)
Q Consensus 15 ~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~~~a~n~~g 94 (516)
++|.+|+++.++++++.|+|.+|. +.+.+|.|+|+..++.... .......+++.|.+|++++.|.|++.|.+..|
T Consensus 2 ~~P~nl~v~~~~~~s~~l~W~~p~----~~~~~Y~v~~~~~~~~~~~-~~~~~~~~~~~~~~L~p~t~Y~v~V~a~~~~~ 76 (86)
T d1tdqa3 2 DSPRDLMVTASSETSISLIWTKAS----GPIDHYRITFTPSSGISSE-VTVPRDRTSYTLTDLEPGAEYIISITAERGRQ 76 (86)
T ss_dssp CCCEEEEEEEECSSCEEEEEECCC----SCCSEEEEEEECSSSCCEE-EEEESSCSEEEECCCCTTCCEEEEEEEEETTE
T ss_pred ccCCCCEEEEecCCEEEEEEeCCC----CCccceEEEEecccccceE-EEeCCCccEEEECCCccccEEEEEEEEEcCCC
Confidence 589999999999999999999974 4588999999987663322 23456789999999999999999999999888
Q ss_pred CCCCC
Q psy7039 95 PGEAS 99 (516)
Q Consensus 95 ~~~~s 99 (516)
.+.++
T Consensus 77 ~s~p~ 81 (86)
T d1tdqa3 77 QSLES 81 (86)
T ss_dssp ECCCE
T ss_pred EECCE
Confidence 77653
|
| >d1owwa_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin, different Fn3 modules species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.02 E-value=3.4e-10 Score=85.25 Aligned_cols=82 Identities=24% Similarity=0.402 Sum_probs=66.1
Q ss_pred CCCcceEEEeeeC--CeeEEEecCCCCCCCCceeceEEEEEeCCC-CeEEeEEeecCCcEEEeCCCcCCCeEEEEEEEec
Q psy7039 15 GKPTDLEATDWDK--DHVDLQWTPPISDGGSPITGYVVEMKDKTG-NWEKAVVVPAGETSCTVPGLIEGETYQFQVRAVN 91 (516)
Q Consensus 15 ~~p~~l~~~~~~~--~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~-~~~~~~~~~~~~~~~~i~~l~~~~~y~~~~~a~n 91 (516)
.+|.++.++.+.. +++.|+|++|. ++.|.+|+|+|+..++ .+......+....+++|.+|+|+..|.|++.|+|
T Consensus 1 saP~~~~vt~~~~~~~s~~vsW~~P~---~~~i~~Y~i~y~~~~~~~~~~~~~v~~~~~~~~l~gL~P~t~Y~v~v~av~ 77 (93)
T d1owwa_ 1 SGPVEVFITETPSQPNSHPIQWNAPQ---PSHISKYILRWRPKNSVGRWKEATIPGHLNSYTIKGLKPGVVYEGQLISIQ 77 (93)
T ss_dssp CCCCEEECCCCSSCTTCEEEEEECCS---SSCEEEEEEEEEETTCSSCCEEEEECSSCCEEEECSCCSSEEEEEEEEEEE
T ss_pred CcCcccEEEEccCCCCEEEEEeeccc---ccceeEEEEEEeeccccceeeeeccCCCccEEEECCcccCcEEEEEEEEEe
Confidence 3688888877654 78999999973 3569999999998655 3333345667889999999999999999999999
Q ss_pred CCCCCCCC
Q psy7039 92 AAGPGEAS 99 (516)
Q Consensus 92 ~~g~~~~s 99 (516)
..|.++.+
T Consensus 78 ~~G~s~~~ 85 (93)
T d1owwa_ 78 QYGHQEVT 85 (93)
T ss_dssp SSSCEEEE
T ss_pred CCCccCcE
Confidence 99987643
|
| >d1tdqa2 b.1.2.1 (A:94-185) Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Tenascin species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.02 E-value=5.1e-10 Score=84.49 Aligned_cols=81 Identities=19% Similarity=0.315 Sum_probs=66.0
Q ss_pred CCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCC-CeEEeE--EeecCCcEEEeCCCcCCCeEEEEEEEec
Q psy7039 15 GKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTG-NWEKAV--VVPAGETSCTVPGLIEGETYQFQVRAVN 91 (516)
Q Consensus 15 ~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~-~~~~~~--~~~~~~~~~~i~~l~~~~~y~~~~~a~n 91 (516)
++|.+|++..+++++|.|+|.+|. +.+.+|.|+|+..++ .+.... ....+.++++|.+|.|+..|.|++.|.|
T Consensus 2 daP~~l~v~~~~~~sv~v~W~~p~----~~~~~y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~~ 77 (92)
T d1tdqa2 2 DAPKNLRVGSRTATSLDLEWDNSE----AEAQEYKVVYSTLAGEQYHEVLVPKGIGPTTKTTLTDLVPGTEYGVGISAVM 77 (92)
T ss_dssp CCCEEEEEEEECSSCEEEEEECCS----SCCSEEEEEEEETTCCCCEEEEEECCSSSEEEEEECSCCTTCEEEEEEEEEE
T ss_pred ccCcCCEEEEecCCEEEEEEEecC----CcccceEEEEEEcCCCcceeeEEEecCCCeeEEEECCccCCCEEEEEEEEEe
Confidence 478999999999999999999973 358899999998655 333322 2345668899999999999999999999
Q ss_pred CCCCCCCC
Q psy7039 92 AAGPGEAS 99 (516)
Q Consensus 92 ~~g~~~~s 99 (516)
..|.+.++
T Consensus 78 ~~g~s~p~ 85 (92)
T d1tdqa2 78 NSKQSIPA 85 (92)
T ss_dssp TTEECCCE
T ss_pred CCCEecCE
Confidence 98887653
|
| >d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Hemolin species: Moth (Hyalophora cecropia) [TaxId: 7123]
Probab=99.02 E-value=3.1e-10 Score=86.10 Aligned_cols=76 Identities=9% Similarity=0.108 Sum_probs=62.5
Q ss_pred ccccEEEEcCCeEEEEEEEeeecCC-ceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCce
Q psy7039 361 SIRDMTVLAGEEFTITVPFSGRPKP-TPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSD 438 (516)
Q Consensus 361 ~~~~~~v~~g~~~~l~C~~~g~p~~-~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~ 438 (516)
.+.++.+.+|+.+.|.|.+.|.|.+ .+.|+++|..+......... .....+|.|.++.. .|.|.|+|.|.|..|..
T Consensus 8 ~p~~~~v~~g~~~~l~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~-~~~~~~L~i~~v~~-~D~G~Y~C~a~N~~G~~ 84 (94)
T d1biha1 8 QPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAAL-RKDEGSLVFLRPQA-SDEGHYQCFAETPAGVA 84 (94)
T ss_dssp CCSEEEEETTSCEEECCCEESCCSSCEEEEEESSSBCCTTTTTEEE-CTTSCCEEESSCCG-GGCEEEEEEEEETTEEE
T ss_pred cCCcEEEeCCCeEEEEEEecCCCCeeEEEEEeeeeeeeeecceeee-cccceEEEEeccCh-hcCeEEEEEEEeCCCEE
Confidence 4567889999999999999999876 79999999988654433332 23345799999999 99999999999999974
|
| >d1fnha1 b.1.2.1 (A:3-92) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin, different Fn3 modules species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.01 E-value=6.1e-10 Score=83.66 Aligned_cols=80 Identities=29% Similarity=0.449 Sum_probs=68.0
Q ss_pred CCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCC-CeEEeEEeecCCcEEEeCCCcCCCeEEEEEEEecCCC
Q psy7039 16 KPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTG-NWEKAVVVPAGETSCTVPGLIEGETYQFQVRAVNAAG 94 (516)
Q Consensus 16 ~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~-~~~~~~~~~~~~~~~~i~~l~~~~~y~~~~~a~n~~g 94 (516)
||.+|++..+++++|.|+|.+|. ..+.+|.++|....+ .+..........++++|.+|.++..|.|+++|.|..|
T Consensus 2 pP~~l~~~~v~~~si~l~W~~p~----~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~g 77 (90)
T d1fnha1 2 APTDLKFTQVTPTSLSAQWTPPN----VQLTGYRVRVTPKEKTGPMKEINLAPDSSSVVVSGLMVATKYEVSVYALKDTL 77 (90)
T ss_dssp CCEEEEEEEECSSCEEEEEECCS----SCCSEEEEEEEESSSCSCCCEEEECTTCCEEEECSCCTTCEEEEEEEEEETTE
T ss_pred CCCCEEEEEecCCEEEEEEEccc----eeccceEEEEEeeeCCCceEEEEeCCCCeEEEEecccCceEEEEEEEEEeCCC
Confidence 68999999999999999999974 347789999988655 5555556667889999999999999999999999998
Q ss_pred CCCCC
Q psy7039 95 PGEAS 99 (516)
Q Consensus 95 ~~~~s 99 (516)
.+.++
T Consensus 78 ~s~~~ 82 (90)
T d1fnha1 78 TSRPA 82 (90)
T ss_dssp ECCCE
T ss_pred CcCCE
Confidence 87754
|
| >d1wfta_ b.1.2.1 (A:) Host cell factor 2, HCF-2 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Host cell factor 2, HCF-2 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.01 E-value=2.1e-10 Score=91.88 Aligned_cols=90 Identities=23% Similarity=0.367 Sum_probs=68.8
Q ss_pred CCCCCCCCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCC-Ce-------EE-e-------EEeecCCcEE
Q psy7039 9 NPFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTG-NW-------EK-A-------VVVPAGETSC 72 (516)
Q Consensus 9 ~~~~~p~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~-~~-------~~-~-------~~~~~~~~~~ 72 (516)
++.+.|++|.+++++. ..++|.|+|.+|..+ +++|.+|.|+|+..+. .+ .. . ..+.....++
T Consensus 3 ~~~~~P~aP~~v~v~~-~~~si~l~W~~P~~~-~g~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (123)
T d1wfta_ 3 SGSSGPGAPSTVRISK-NVDGIHLSWEPPTSP-SGNILEYSAYLAIRTAQMQDNPSQLVFMRIYCGLKTSCTVTAGQLAN 80 (123)
T ss_dssp CSSSCCCCCEEEEEEE-CSSEEEEEEECCSSC-CSSCCCEEEEEEECSSCCCSCSCCCEEEEEEEESCSEEEEEHHHHTT
T ss_pred CCCCCCcCCcccEEEe-CCCEEEEEecCchhc-CCceEEEEEEEEECCCCCccccceeeeEEEecCCceeEeecCCccEE
Confidence 5678899999999874 688999999998755 4589999999987443 11 11 1 1122334566
Q ss_pred EeCCCcCCCeEEEEEEEecCCCCCCCCC
Q psy7039 73 TVPGLIEGETYQFQVRAVNAAGPGEASK 100 (516)
Q Consensus 73 ~i~~l~~~~~y~~~~~a~n~~g~~~~s~ 100 (516)
.|.+|+++..|.|+|+|.|..|.+.++.
T Consensus 81 ~i~~L~p~t~Y~frV~A~N~~G~Gp~S~ 108 (123)
T d1wfta_ 81 AHIDYTSRPAIVFRISAKNEKGYGPATQ 108 (123)
T ss_dssp CCCBCSSSCEEEEEEEEBSSSSBCCCEE
T ss_pred EEcCCCCCCEEEEEEEEecCCcCCCCCC
Confidence 8889999999999999999999987654
|
| >d3d48r2 b.1.2.1 (R:101-204) Prolactin receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Prolactin receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.01 E-value=1.9e-09 Score=83.26 Aligned_cols=86 Identities=24% Similarity=0.403 Sum_probs=63.6
Q ss_pred CCCCCcceEEE----eeeCCeeEEEecCCCC---CCCCceeceEEEEEeCCC-CeEEeEEeecCCcEEEeCCCcCCCeEE
Q psy7039 13 EPGKPTDLEAT----DWDKDHVDLQWTPPIS---DGGSPITGYVVEMKDKTG-NWEKAVVVPAGETSCTVPGLIEGETYQ 84 (516)
Q Consensus 13 ~p~~p~~l~~~----~~~~~~v~l~W~~p~~---~~~~~i~~Y~v~~~~~~~-~~~~~~~~~~~~~~~~i~~l~~~~~y~ 84 (516)
+|+||.+|.+. ...++++.|+|.+|.. .++..+..|++++...+. .|.... ....+.+.|.+|.+++.|.
T Consensus 2 kP~pP~~l~~~~~~~~~~~~~l~v~W~pP~~~~~~~~~~~~~Y~~~~~~~~~~~~~~~~--~~~~~~~~i~~L~p~t~Y~ 79 (104)
T d3d48r2 2 QPDPPLELAVEVKQPEDRKPYLWIKWSPPTLIDLKTGWFTLLYEIRLKPEKAAEWEIHF--AGQQTEFKILSLHPGQKYL 79 (104)
T ss_dssp CCCCCEEEEEECC------CCEEEEEECCTTCCCTTSSCCEEEEEEEEETTCSSCEEEE--EETCSEEEECC--CCCEEE
T ss_pred CCcCCCCCEEEEEeccCCCCeEEEEEeCCccccCCCCcEEEEEeeccccccccceeeec--cccccEEEECCCCCCCEEE
Confidence 68999999885 4467789999999852 233457789999988776 555443 3468899999999999999
Q ss_pred EEEEEecCCCC-CCCCC
Q psy7039 85 FQVRAVNAAGP-GEASK 100 (516)
Q Consensus 85 ~~~~a~n~~g~-~~~s~ 100 (516)
|+++|.|..|. +.+|.
T Consensus 80 ~rVrA~n~~G~ws~wS~ 96 (104)
T d3d48r2 80 VQVRCKPDHGYWSAWSP 96 (104)
T ss_dssp EEEEEEESSSCCCCCCC
T ss_pred EEEEEEeCCCCCCCCcC
Confidence 99999999886 66554
|
| >d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Interleukin-6 receptor alpha chain, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.01 E-value=3.8e-10 Score=85.05 Aligned_cols=79 Identities=11% Similarity=0.070 Sum_probs=63.3
Q ss_pred CCCccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcC-ceeeEEeeCCeeeccCCceEEe
Q psy7039 112 LAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEP-FLNHGWSINGQVCQIGGRADVQ 190 (516)
Q Consensus 112 ~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~i~W~~~~~~~~~~~~~~~~ 190 (516)
.+|.+. ..+..+.+.+|+.+.|.|.+. +.| .++++|++++..+....+....
T Consensus 5 ~~P~~~-~~~~~v~~~~G~~v~L~C~~~--------------------------g~~~~~~i~W~k~~~~l~~~~~~~~~ 57 (93)
T d1n26a1 5 RCPAQE-VARGVLTSLPGDSVTLTCPGV--------------------------EPEDNATVHWVLRKPAAGSHPSRWAG 57 (93)
T ss_dssp CCCCCC-CCTTEEEECTTCCEEEECTTS--------------------------CTTCCSEEEEEEECSSSSCCCEEEEE
T ss_pred CCCcEE-eCCCCEEEeCCCcEEEEEEee--------------------------cCCCCceEEEEEccccccceeeEEec
Confidence 467776 567788999999999999998 755 4689999999888766554333
Q ss_pred ecCCeeEEEeccCCCCCCeeEEEEEEcCCC
Q psy7039 191 TTKSETVLDIPFCSRSDTGHYSLTLENNLG 220 (516)
Q Consensus 191 ~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g 220 (516)
...+|.|.+++.+|+|.|+|.+.|..+
T Consensus 58 ---~~~~L~I~~v~~~D~G~Y~C~a~n~~~ 84 (93)
T d1n26a1 58 ---MGRRLLLRSVQLHDSGNYSCYRAGRPA 84 (93)
T ss_dssp ---ESSEEEECSCCGGGCEEEEEESSSSCS
T ss_pred ---CCCEEEECCCChhcCEEEEEEECCccc
Confidence 234899999999999999999877543
|
| >d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cardiac myosin binding protein C, different domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.01 E-value=4.4e-10 Score=88.02 Aligned_cols=86 Identities=15% Similarity=0.083 Sum_probs=66.1
Q ss_pred CcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcC---ceeeEEeeCCeeecc---CCceEEee-
Q psy7039 119 STLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEP---FLNHGWSINGQVCQI---GGRADVQT- 191 (516)
Q Consensus 119 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p---~~~i~W~~~~~~~~~---~~~~~~~~- 191 (516)
..+.++.+..|+.+.|.|.+. |.| .+.+.|++++..... ..++....
T Consensus 9 ~~P~~~~v~~G~~v~l~C~v~--------------------------g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~ 62 (110)
T d2avga1 9 MRPQDGEVTVGGSITFSARVA--------------------------GASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDS 62 (110)
T ss_dssp ECCCCEEEETTSEEEEEEEEE--------------------------CCSCSSSCEEEEECSTTCCSTTTCSSSEEEEEE
T ss_pred ECCCeEEEECCCCEEEEEeec--------------------------CCCCCCCCEEEEEeCceeeecccCCceeEeeee
Confidence 567789999999999999999 887 578999997653321 12222221
Q ss_pred -----cCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEEeec
Q psy7039 192 -----TKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVTG 230 (516)
Q Consensus 192 -----~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~~~ 230 (516)
......|.|.+++..|+|.|+|.+.|..|.......+.+
T Consensus 63 ~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V 106 (110)
T d2avga1 63 YDRASKVYLFELHITDAQPAFTGGYRCEVSTKDKFDCSNFNLTV 106 (110)
T ss_dssp EETTTTEEEEEEEEESCCTTCCEEEEEEEEETTEEEEEEEEEEE
T ss_pred eEEecccCEEEEEEeccCHHHCcEEEEEEEECCCeEEEEEEEEE
Confidence 123468999999999999999999999999888776554
|
| >d1axib2 b.1.2.1 (B:131-236) Growth hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Growth hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.01 E-value=1.3e-09 Score=84.50 Aligned_cols=91 Identities=20% Similarity=0.341 Sum_probs=68.4
Q ss_pred CCCCcceEEEeee------CCeeEEEecCCCC---CCCCceeceEEEEEeCCC-CeEEeEEeecCCcEEEeCCCcCCCeE
Q psy7039 14 PGKPTDLEATDWD------KDHVDLQWTPPIS---DGGSPITGYVVEMKDKTG-NWEKAVVVPAGETSCTVPGLIEGETY 83 (516)
Q Consensus 14 p~~p~~l~~~~~~------~~~v~l~W~~p~~---~~~~~i~~Y~v~~~~~~~-~~~~~~~~~~~~~~~~i~~l~~~~~y 83 (516)
|+||.+|+++... .++|.|+|.+|.. +++..+..|+|+|+..+. .|..... ...+.+.|.+|.+++.|
T Consensus 1 PdPP~~l~~t~~~~s~~~~~~~v~vsW~pP~~~~~~~~~~~l~Y~v~y~~~~~~~w~~~~~--~~~~~~~i~~L~~~t~Y 78 (106)
T d1axib2 1 PDPPIALNWTLLNVSLTGIHADIQVRWEAPRNADIQKGWMVLEYELQYKEVNETKWKMMDP--ILTTSVPVYSLKVDKEY 78 (106)
T ss_dssp CCCCEEEEEEECSCCSSCSEEEEEEEEECCTTSCTTTTSCCEEEEEEEEETTCSSCEECCC--BSSSEEEEEEEETTSCE
T ss_pred CcCCCCceeeEeeeccccccCeEEEEEcCCCccCCCCCeeEEEEEEeeeecCCccceeeee--cccceEEECCCCCCCEE
Confidence 8999999986432 3469999999853 333457899999998766 8876643 36789999999999999
Q ss_pred EEEEEEecCCCCCCCCCCCcceEe
Q psy7039 84 QFQVRAVNAAGPGEASKPTAPIVA 107 (516)
Q Consensus 84 ~~~~~a~n~~g~~~~s~~~~~~~~ 107 (516)
.|+++|.+..| +.++..+..+.+
T Consensus 79 ~frVRa~~~~~-g~ws~wS~~v~v 101 (106)
T d1axib2 79 EVRVRSKQRNS-GNYGEFSEVLYV 101 (106)
T ss_dssp EEEEEEEETTS-SCCCCCCCCEEE
T ss_pred EEEEEEEECCC-CCCCCCCCCEEE
Confidence 99999988644 444555544544
|
| >d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Twitchin species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]
Probab=99.01 E-value=9.9e-11 Score=87.76 Aligned_cols=82 Identities=13% Similarity=0.260 Sum_probs=71.6
Q ss_pred cccccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCcee
Q psy7039 360 LSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDS 439 (516)
Q Consensus 360 ~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s 439 (516)
..+.+..+.+|+++.|.|.+ +.|.+.+.|+++|..+..+.++.+...++...|.|.++.. .|+|.|+|.|.|..
T Consensus 6 ~~l~d~~v~~G~~~~~~c~v-s~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~-~D~G~Y~c~a~n~~---- 79 (89)
T d1tiua_ 6 KPLYGVEVFVGETAHFEIEL-SEPDVHGQWKLKGQPLTASPDCEIIEDGKKHILILHNCQL-GMTGEVSFQAANAK---- 79 (89)
T ss_dssp BCCCCEEEETTSCCCEEEBC-SSSSCCCBCCSSSCCCCSSSSCEEEECSSCEEEECCSCCS-CCCSEECCBCSSCB----
T ss_pred cCCcCEEEeCCCcEEEEEEE-CCCCcEEEEEEeeeecccceeEEEEeeceeEEEEEcCCCh-hcCEEEEEEECceE----
Confidence 45678999999999999998 5788999999999999888999998888889999999999 99999999987654
Q ss_pred EEEEEEEe
Q psy7039 440 ASCKVYVV 447 (516)
Q Consensus 440 ~s~~l~v~ 447 (516)
.++.|.|.
T Consensus 80 ~sa~l~V~ 87 (89)
T d1tiua_ 80 SAANLKVK 87 (89)
T ss_dssp CCEEEEEE
T ss_pred EEEEEEEE
Confidence 34566664
|
| >d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Tyrosine-protein kinase receptor tyro3, second domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.99 E-value=4.3e-10 Score=83.24 Aligned_cols=76 Identities=18% Similarity=0.264 Sum_probs=59.2
Q ss_pred ccccEEEEcCCeEEEEEEEeeecCC-ceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCce-
Q psy7039 361 SIRDMTVLAGEEFTITVPFSGRPKP-TPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSD- 438 (516)
Q Consensus 361 ~~~~~~v~~g~~~~l~C~~~g~p~~-~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~- 438 (516)
.+.+..+..|+.+.|.|.+.|.|.| .+.|++++..+..... . .++|..... .|.|.|+|.|.|..|..
T Consensus 7 ~P~~~~v~~G~~~~l~C~~~g~P~P~~i~W~k~g~~i~~~~~-------~--~~~l~~~~~-~d~G~Y~C~A~N~~G~~~ 76 (85)
T d1rhfa2 7 EPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPAP-------S--PSVLNVTGV-TQSTMFSCEAHNLKGLAS 76 (85)
T ss_dssp CCCCEEECTTCCEEEEEEEECSSSCCEEEEEETTEECSCSEE-------S--SEEEEECCC-SSCEEEEEEEEETTEEEE
T ss_pred eCCcEEEcCCCEEEEEEEEecCCcceEEEEEECCEECCCCCC-------c--ceEEecCCc-cccEEEEEEEEcCCCcEE
Confidence 3566889999999999999999988 8999999988754321 1 234445556 89999999999999964
Q ss_pred eEEEEEEE
Q psy7039 439 SASCKVYV 446 (516)
Q Consensus 439 s~s~~l~v 446 (516)
+..+.|.|
T Consensus 77 S~~~~v~V 84 (85)
T d1rhfa2 77 SRTATVHL 84 (85)
T ss_dssp CCCEEEEE
T ss_pred EEEEEEEE
Confidence 45677765
|
| >d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: High affinity nerve growth factor receptor TrkA, different domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.99 E-value=4.7e-11 Score=90.38 Aligned_cols=82 Identities=17% Similarity=0.124 Sum_probs=66.5
Q ss_pred cccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCce-EEEEEEEcCCCceeE
Q psy7039 362 IRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSG-SYTIQLVNTVGSDSA 440 (516)
Q Consensus 362 ~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g-~y~c~a~n~~G~~s~ 440 (516)
+.+..+.+|+.+.|.|.+.|.|.|.+.|++++..+..... .........|.|.++.. .|.| .|+|.|.|..|....
T Consensus 9 ~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~--~~~~~~~~~L~i~~~~~-~d~G~~Y~C~a~N~~G~~~~ 85 (92)
T d2ifga1 9 VPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVM--KSGGLPSLGLTLANVTS-DLNRKNVTCWAENDVGRAEV 85 (92)
T ss_dssp CCSSCCBTTCCEEEEEEEECSSCCCCCEEESCCCSSEEEC--CCCCSSEEEEEEESCCS-TTTTCCEEECCEETTEECCE
T ss_pred CCCEEEeCCCEEEEeeeccCCCCcEEEEEECCceeeeeee--eeeeccceeEEEccccc-cccceEEEEEEEcCCCEEEE
Confidence 3456788999999999999999999999999876643221 12234557899999999 9998 699999999999888
Q ss_pred EEEEEE
Q psy7039 441 SCKVYV 446 (516)
Q Consensus 441 s~~l~v 446 (516)
++.|.|
T Consensus 86 s~~l~V 91 (92)
T d2ifga1 86 SVQVNV 91 (92)
T ss_dssp EECCCC
T ss_pred EEEEEE
Confidence 877765
|
| >d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: B- and T-lymphocyte attenuator CD272 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.99 E-value=1.5e-09 Score=83.92 Aligned_cols=87 Identities=21% Similarity=0.310 Sum_probs=66.4
Q ss_pred ccccEEEEcCCeEEEEEEEeeecC-CceEEEECCeecCC---CCceEEEEcC--CeEEEEEcCceecCCceEEEEEEEcC
Q psy7039 361 SIRDMTVLAGEEFTITVPFSGRPK-PTPIWTVNGDEVSP---DGRIKFETSE--NQTIYRNKSAKRATDSGSYTIQLVNT 434 (516)
Q Consensus 361 ~~~~~~v~~g~~~~l~C~~~g~p~-~~i~W~~~~~~l~~---~~~~~~~~~~--~~~~l~i~~~~~~~~~g~y~c~a~n~ 434 (516)
.+....+..|+++.|.|.+.|.|. |.|.|++++..+.. .......... ....|.|.++.. .|.|.|+|.|.|.
T Consensus 9 ~~~~~~v~~G~~v~L~C~v~g~p~~P~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~-~D~G~Y~C~A~N~ 87 (104)
T d2aw2a1 9 RQSEHSILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNISFFILHFEPVLP-NDNGSYRCSANFQ 87 (104)
T ss_dssp TTEEEEEETTSCEEEEEEEECSSSCCEEEEEEECSSCEEECCSSCEEEEECSSCEEEEEEESSCCG-GGCEEEEEEEEET
T ss_pred cCCeEEEeCCCeEEEEEEEEeeCCCCEEEEEecCcccccccceeeeeEEecCCceEEEEEEccccH-HHCCeEEEEEEcC
Confidence 456678999999999999999984 89999998875521 1222222222 234699999999 9999999999999
Q ss_pred CCce-eEEEEEEEec
Q psy7039 435 VGSD-SASCKVYVVD 448 (516)
Q Consensus 435 ~G~~-s~s~~l~v~~ 448 (516)
.|.. +.++.|.|.+
T Consensus 88 ~G~~~s~~~~l~V~e 102 (104)
T d2aw2a1 88 SNLIESHSTTLYVTD 102 (104)
T ss_dssp TEEEECCCEEEEEEC
T ss_pred CCeEEEEEEEEEEEE
Confidence 9974 5577887764
|
| >d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=98.99 E-value=5.4e-10 Score=85.25 Aligned_cols=82 Identities=22% Similarity=0.323 Sum_probs=63.1
Q ss_pred cccEEEEcC---CeEEEEEEEeeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCce
Q psy7039 362 IRDMTVLAG---EEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSD 438 (516)
Q Consensus 362 ~~~~~v~~g---~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~ 438 (516)
+.+..+..| +.+.|.|.+.|.|.|.+.|++++..+............+ ..|.|..+.. .|.|.|+|.|.|..|..
T Consensus 11 P~~~~~~~g~~~~~v~l~C~~~g~P~p~v~W~~ng~~i~~~~~~~~~~~~~-~~l~i~~~~~-~d~G~Y~C~a~N~~G~~ 88 (97)
T d1cs6a1 11 PAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAG-DLVISNPVKA-KDAGSYQCVATNARGTV 88 (97)
T ss_dssp CCCEEEETTCSCCEEEECCEEEEESCCEEEEEETTEECCCSTTSSEEEETT-EEEEESCCHH-HHCEEEEEEEEETTEEE
T ss_pred CCCEEEECccCCCeEEEEEEEEEeCCCEEEEEEeeeeccCCCCceEEeeee-eEEEEecccc-cCCEEEEEEEEECCCEE
Confidence 344555555 789999999999999999999999886554443333333 5788888999 99999999999999974
Q ss_pred -eEEEEEE
Q psy7039 439 -SASCKVY 445 (516)
Q Consensus 439 -s~s~~l~ 445 (516)
+..+.|.
T Consensus 89 ~S~~a~L~ 96 (97)
T d1cs6a1 89 VSREASLR 96 (97)
T ss_dssp ECCCEEEE
T ss_pred EEEEEEEe
Confidence 4455553
|
| >d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Receptor-type tyrosine-protein phosphatase mu species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.99 E-value=6e-10 Score=84.81 Aligned_cols=85 Identities=12% Similarity=0.234 Sum_probs=62.1
Q ss_pred CCccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEee---CCeeeccCCceEE
Q psy7039 113 APRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSI---NGQVCQIGGRADV 189 (516)
Q Consensus 113 ~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~---~~~~~~~~~~~~~ 189 (516)
+|.|. .++++.+.+|+++.|.|.+. |.|.+.+.|.+ ++..........+
T Consensus 2 ~P~f~--~~~~~~v~~G~~v~l~C~~~--------------------------g~p~p~~~~~~~~~~~~~~~~~~~~~~ 53 (96)
T d2c9aa1 2 TPHFL--RIQNVEVNAGQFATFQCSAI--------------------------GRTVAGDRLWLQGIDVRDAPLKEIKVT 53 (96)
T ss_dssp SCEEC--CCCCEEECSSSCEEEEEEEE--------------------------SCCCSSCEEEEEETTBCCCCEEEEEEE
T ss_pred cCeec--ccCCEEEeCCCEEEEEEEEe--------------------------ecCCCcEEEEEeeeeeeeecCCceeEE
Confidence 46664 37889999999999999999 98888766443 2222222222333
Q ss_pred eecCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEE
Q psy7039 190 QTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATAS 225 (516)
Q Consensus 190 ~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~ 225 (516)
.......+|.|.++..+|+|.|+|.+.|..|.....
T Consensus 54 ~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~ 89 (96)
T d2c9aa1 54 SSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGISN 89 (96)
T ss_dssp ETTEEEEEEEECSCCGGGCSEEEEEEEETTEEEEEE
T ss_pred EeecCceEEEECCCCHHHCeEEEEEEEeCCCeEEEE
Confidence 334445689999999999999999999999976443
|
| >d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Intercellular adhesion molecule-1, ICAM-1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.99 E-value=1.8e-10 Score=84.89 Aligned_cols=78 Identities=17% Similarity=0.176 Sum_probs=61.8
Q ss_pred Cccc-cCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEeec
Q psy7039 114 PRID-RSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTT 192 (516)
Q Consensus 114 p~~~-~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~ 192 (516)
|+|. ...+..+.+.+|+.+.|.|.+. |.|.+.++|++++..+....
T Consensus 3 P~i~~~~~p~~~~~~~G~~~~l~C~a~--------------------------G~P~P~v~W~k~g~~~~~~~------- 49 (84)
T d2oz4a3 3 PRLDERDCPGNWTWPENSQQTPMCQAW--------------------------GNPLPELKCLKDGTFPLPIG------- 49 (84)
T ss_dssp EECCGGGSCSEEEEETTCEECCCCCCE--------------------------EESCCEEEEEETTTEECCTT-------
T ss_pred CceeecCCCccEEEeCCCEEEEEEEEe--------------------------EcCccEEEEEEeeccceeee-------
Confidence 4453 2345678999999999999999 99999999999987765432
Q ss_pred CCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEEeec
Q psy7039 193 KSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVTG 230 (516)
Q Consensus 193 ~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~~~ 230 (516)
.+.+++.+|+|.|.|.+.|..|.......+.+
T Consensus 50 ------~~~~v~~~d~G~Y~C~A~N~~G~~~~~~~l~V 81 (84)
T d2oz4a3 50 ------ESVTVTRDLEGTYLCRARSTQGEVTREVTVNV 81 (84)
T ss_dssp ------SCEECCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred ------eeeccccCCCCEEEEEEEcCCCEEEEEEEEEE
Confidence 34567889999999999999998766655443
|
| >d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Ligand binding domain of trkB receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.98 E-value=2.1e-09 Score=82.79 Aligned_cols=77 Identities=14% Similarity=0.199 Sum_probs=64.2
Q ss_pred cCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEee-----cCCeeEEEecc
Q psy7039 128 AGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQT-----TKSETVLDIPF 202 (516)
Q Consensus 128 ~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~-----~~~~~~l~i~~ 202 (516)
.+....|.|.+. |.|.+.+.|++++..+..+.+..+.. ....+.|.|.+
T Consensus 15 ~~~~~~i~~~v~--------------------------G~P~P~i~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~L~i~~ 68 (103)
T d1wwbx_ 15 SDHHWCIPFTVK--------------------------GNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDN 68 (103)
T ss_dssp CCCEEEEEEEEE--------------------------CSSCCEEEEEETTEEECCCSSEEEEEEEECSSEEEEEEEEES
T ss_pred cceeEEEEEEEE--------------------------EeCCCEEEEEECCEEeeeeeeeeeeecccccccceEEEEECC
Confidence 567778999999 99999999999999998776665442 12346899999
Q ss_pred CCCCCCeeEEEEEEcCCCceEEEEEeec
Q psy7039 203 CSRSDTGHYSLTLENNLGTATASAHVTG 230 (516)
Q Consensus 203 ~~~~d~g~Y~c~~~~~~g~~~~~~~~~~ 230 (516)
++..|+|.|+|.+.|..|.....+.+.+
T Consensus 69 ~~~~D~G~Y~C~a~N~~G~~~~~~~v~V 96 (103)
T d1wwbx_ 69 PTHMNNGDYTLIAKNEYGKDEKQISAHF 96 (103)
T ss_dssp CCGGGCEEEEEEEECSSCEEEEEEEECC
T ss_pred CCHHhCceEEEEEeccCCEEEEEEEEEE
Confidence 9999999999999999999987776544
|
| >d2cuma1 b.1.2.1 (A:7-99) Tenascin-X {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Tenascin-X species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.98 E-value=1.7e-09 Score=81.64 Aligned_cols=79 Identities=25% Similarity=0.433 Sum_probs=66.7
Q ss_pred CCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCCCeEEeEEeecCCcEEEeCCCcCCCeEEEEEEEecCCC
Q psy7039 15 GKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVVVPAGETSCTVPGLIEGETYQFQVRAVNAAG 94 (516)
Q Consensus 15 ~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~~~a~n~~g 94 (516)
++|.+|++..++++++.|+|.+|. +.+.+|.|.|+..++.+.. .......+++.|.+|.|+..|.|++.|.|..|
T Consensus 3 ~~P~~l~~~~~~~~sv~l~W~~p~----~~~~~Y~v~~~~~~~~~~~-~~~~~~~~~~~i~~L~p~t~Y~~~V~a~~~~g 77 (93)
T d2cuma1 3 EAPRDLEAKEVTPRTALLTWTEPP----VRPAGYLLSFHTPGGQTQE-ILLPGGITSHQLLGLFPSTSYNARLQAMWGQS 77 (93)
T ss_dssp CCCEEEEEESCCSSCEEEEEECCS----SCCSEEEEEEECTTSCEEE-EEECSSCSEEEECSCCTTCEEEEEEEEEBTTB
T ss_pred CcCCCCEEEEeCCCEEEEEEEccc----cccccEEEEEEccccccEE-EEECCCccEEEEeCccCCCEEEEEEEEEeCCC
Confidence 488999999999999999999974 4588999999987664433 34456788999999999999999999999888
Q ss_pred CCCC
Q psy7039 95 PGEA 98 (516)
Q Consensus 95 ~~~~ 98 (516)
.+.+
T Consensus 78 ~s~~ 81 (93)
T d2cuma1 78 LLPP 81 (93)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7764
|
| >d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Receptor-type tyrosine-protein phosphatase mu species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.98 E-value=5.7e-10 Score=84.97 Aligned_cols=86 Identities=15% Similarity=0.131 Sum_probs=62.5
Q ss_pred ccccEEEEcCCeEEEEEEEeeecCCceEEEE--CC-eecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCc
Q psy7039 361 SIRDMTVLAGEEFTITVPFSGRPKPTPIWTV--NG-DEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGS 437 (516)
Q Consensus 361 ~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~--~~-~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~ 437 (516)
.+.+..+..|+.+.|.|.+.|.|.|.+.|.+ ++ ..+.......+........|.|.++.. .|.|.|+|.|.|..|.
T Consensus 7 ~~~~~~v~~G~~v~l~C~~~g~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~-~D~G~Y~C~a~N~~G~ 85 (96)
T d2c9aa1 7 RIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTK-RDAGKYRCMIRTEGGV 85 (96)
T ss_dssp CCCCEEECSSSCEEEEEEEESCCCSSCEEEEEETTBCCCCEEEEEEEETTEEEEEEEECSCCG-GGCSEEEEEEEETTEE
T ss_pred ccCCEEEeCCCEEEEEEEEeecCCCcEEEEEeeeeeeeecCCceeEEEeecCceEEEECCCCH-HHCeEEEEEEEeCCCe
Confidence 3577899999999999999999988654332 22 222222222333333446799999999 9999999999999998
Q ss_pred e-eEEEEEEEe
Q psy7039 438 D-SASCKVYVV 447 (516)
Q Consensus 438 ~-s~s~~l~v~ 447 (516)
. +..+.|.|+
T Consensus 86 ~~s~~a~L~Vk 96 (96)
T d2c9aa1 86 GISNYAELVVK 96 (96)
T ss_dssp EEEEEEEEEEC
T ss_pred EEEEEEEEEEC
Confidence 5 555788774
|
| >d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Myosin-binding protein C, slow-type species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.96 E-value=6.5e-10 Score=87.50 Aligned_cols=85 Identities=13% Similarity=0.094 Sum_probs=64.2
Q ss_pred CcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcC---ceeeEEeeCCeeec---cCCceEEee-
Q psy7039 119 STLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEP---FLNHGWSINGQVCQ---IGGRADVQT- 191 (516)
Q Consensus 119 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p---~~~i~W~~~~~~~~---~~~~~~~~~- 191 (516)
..+.++.+.+|+.+.|.|.+. |.| .+.+.|++++.... ...++.+..
T Consensus 5 ~~P~~~~v~~G~~v~l~C~v~--------------------------g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~ 58 (113)
T d2dava1 5 EKPQGGTVKVGEDITFIAKVK--------------------------AEDLLRKPTIKWFKGKWMDLASKAGKHLQLKET 58 (113)
T ss_dssp SCCCCCEEETTCCEEEEEEEE--------------------------CCCSSSCCEEEEEESSSCCHHHHTTSSEEEEEE
T ss_pred ECCceEEEeCCCEEEEEEEEc--------------------------cCCCCCCCEEEEEEeeccccccccceeeeeccc
Confidence 566789999999999999999 887 57999999764332 122332221
Q ss_pred -----cCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEEee
Q psy7039 192 -----TKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVT 229 (516)
Q Consensus 192 -----~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~~ 229 (516)
......|.|.+++..|+|.|+|.+.|..|.......+.
T Consensus 59 ~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~ 101 (113)
T d2dava1 59 FERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLE 101 (113)
T ss_dssp EETTTTEEEEEEEECSCCTTSCEEEEEEEECSSCEEEECCEEE
T ss_pred eeeEeecCEEEEEEccCCHHHCeEEEEEEEeCCCEEEEEEEEE
Confidence 22345799999999999999999999999876654443
|
| >d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Junction adhesion molecule, JAM, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.96 E-value=2.6e-10 Score=88.39 Aligned_cols=79 Identities=23% Similarity=0.234 Sum_probs=62.1
Q ss_pred ceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEee-------cCCe
Q psy7039 123 DVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQT-------TKSE 195 (516)
Q Consensus 123 ~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~-------~~~~ 195 (516)
...+.+|+.+.|.|.+.. |.|.+.+.|++++..+....+..... ....
T Consensus 11 ~~~v~~G~~v~l~C~~~~-------------------------g~p~p~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 65 (104)
T d1nbqa2 11 PSSATIGNRAVLTCSEQD-------------------------GSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTT 65 (104)
T ss_dssp BSEEETTSCEEECCCCCS-------------------------CBSCCEEEEEETTCCCCSCSSSSSSCTTCCCCCCTTT
T ss_pred CCEEecCCcEEEEEEeec-------------------------CCCCCEEEEEECCEEccCCCceeEEeeCCcEEEeecc
Confidence 356789999999998741 78999999999998886554333221 2234
Q ss_pred eEEEeccCCCCCCeeEEEEEEcCCCceEEEE
Q psy7039 196 TVLDIPFCSRSDTGHYSLTLENNLGTATASA 226 (516)
Q Consensus 196 ~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~ 226 (516)
..|.|.+++.+|+|.|+|.+.|..|....+.
T Consensus 66 ~~l~I~~v~~~D~G~Y~C~a~N~~G~~~~s~ 96 (104)
T d1nbqa2 66 GELVFDPLSASDTGEYSCEARNGYGTPMTSN 96 (104)
T ss_dssp CCEEESSCCGGGCCCEEEEEECSSSCCEECC
T ss_pred cceEECCCCcccCcEEEEEEEECCCceEEEE
Confidence 6899999999999999999999999876543
|
| >d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=98.95 E-value=2.3e-10 Score=87.41 Aligned_cols=83 Identities=16% Similarity=0.287 Sum_probs=65.0
Q ss_pred CCccccCcccceEEecC---CeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEE
Q psy7039 113 APRIDRSTLNDVKIKAG---QSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADV 189 (516)
Q Consensus 113 ~p~~~~~~~~~~~v~~g---~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~ 189 (516)
+|.|. ..+.++.+.+| +.+.|.|.+. |.|.+.+.|++++..+....+..+
T Consensus 4 ~P~f~-~~P~~~~~~~g~~~~~v~l~C~~~--------------------------g~P~p~v~W~~ng~~i~~~~~~~~ 56 (97)
T d1cs6a1 4 GPVFE-EQPAHTLFPEGSAEEKVTLTCRAR--------------------------ANPPATYRWKMNGTELKMGPDSRY 56 (97)
T ss_dssp EEEEE-ECCCCEEEETTCSCCEEEECCEEE--------------------------EESCCEEEEEETTEECCCSTTSSE
T ss_pred CCEEE-EeCCCEEEECccCCCeEEEEEEEE--------------------------EeCCCEEEEEEeeeeccCCCCceE
Confidence 45555 45566666665 7899999999 999999999999999876554444
Q ss_pred eecCCeeEEEeccCCCCCCeeEEEEEEcCCCceE
Q psy7039 190 QTTKSETVLDIPFCSRSDTGHYSLTLENNLGTAT 223 (516)
Q Consensus 190 ~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~ 223 (516)
...+ ...|.|..+..+|+|.|+|.+.|..|...
T Consensus 57 ~~~~-~~~l~i~~~~~~d~G~Y~C~a~N~~G~~~ 89 (97)
T d1cs6a1 57 RLVA-GDLVISNPVKAKDAGSYQCVATNARGTVV 89 (97)
T ss_dssp EEET-TEEEEESCCHHHHCEEEEEEEEETTEEEE
T ss_pred Eeee-eeEEEEecccccCCEEEEEEEEECCCEEE
Confidence 3333 35788899999999999999999998653
|
| >d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Neural cell adhesion molecule (NCAM) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.95 E-value=3.3e-09 Score=80.73 Aligned_cols=76 Identities=21% Similarity=0.234 Sum_probs=60.8
Q ss_pred ccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCc-eeeEEee-CCeeecc-CCceEEe-ecCCee
Q psy7039 121 LNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPF-LNHGWSI-NGQVCQI-GGRADVQ-TTKSET 196 (516)
Q Consensus 121 ~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~i~W~~-~~~~~~~-~~~~~~~-~~~~~~ 196 (516)
|....+..|+++.|.|.+. |.|. +.+.|++ ++..+.. ..++.+. ......
T Consensus 7 P~~~~v~~G~~~~l~C~v~--------------------------g~p~~~~v~W~~~~g~~~~~~~~~~~~~~~~~~~~ 60 (97)
T d1epfa1 7 PSQGEISVGESKFFLCQVA--------------------------GDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSS 60 (97)
T ss_dssp SSSEEEETTCCEEEEEEEC--------------------------CCSCCCEEEEECTTSCEECCBSSSEEEEEEETTEE
T ss_pred CCCEEEccCCcEEEEEEEE--------------------------eccCCCEEEEEEeeeeeeeeccccEEEEeecCcce
Confidence 4557889999999999999 8874 7999998 4454443 3455544 345678
Q ss_pred EEEeccCCCCCCeeEEEEEEcCCCce
Q psy7039 197 VLDIPFCSRSDTGHYSLTLENNLGTA 222 (516)
Q Consensus 197 ~l~i~~~~~~d~g~Y~c~~~~~~g~~ 222 (516)
+|.|.+++.+|+|.|+|.+.|..|..
T Consensus 61 ~L~I~~~~~~D~G~Y~C~a~N~~G~~ 86 (97)
T d1epfa1 61 TLTIYNANIDDAGIYKCVVTAEDGTQ 86 (97)
T ss_dssp EEEECSCCGGGCEEEEEEEEETTTEE
T ss_pred EEEcccCchhhceEEEEEEEeCCCcE
Confidence 99999999999999999999998864
|
| >d1l6za2 b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.94 E-value=1.5e-09 Score=82.50 Aligned_cols=73 Identities=21% Similarity=0.306 Sum_probs=61.8
Q ss_pred cceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEeecCCeeEEEec
Q psy7039 122 NDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIP 201 (516)
Q Consensus 122 ~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~ 201 (516)
.+..+.+|+.+.|.|.+. + +.+.+.|++++..+....+..+. .....|.|.
T Consensus 11 ~~~~v~~g~~v~l~C~~~--------------------------~-~~~~v~W~~~~~~l~~~~~~~~~--~~~~~L~I~ 61 (96)
T d1l6za2 11 TNTTVKELDSVTLTCLSN--------------------------D-IGANIQWLFNSQSLQLTERMTLS--QNNSILRID 61 (96)
T ss_dssp SCSEECTTSCEEEEECCC--------------------------C-SSCEEEEEETTEECCCCTTEEEE--TTTTEEEEC
T ss_pred CceEEeCCCeEEEEEccC--------------------------C-CCCCEEEEEeeeecccccceecc--CCceEEEEe
Confidence 456789999999999987 5 55789999999999888777764 344689999
Q ss_pred cCCCCCCeeEEEEEEcCCCceE
Q psy7039 202 FCSRSDTGHYSLTLENNLGTAT 223 (516)
Q Consensus 202 ~~~~~d~g~Y~c~~~~~~g~~~ 223 (516)
+++.+|+|.|+|.+.|..|...
T Consensus 62 ~v~~~d~G~Y~C~a~N~~g~~~ 83 (96)
T d1l6za2 62 PIKREDAGEYQCEISNPVSVRR 83 (96)
T ss_dssp SCCGGGCEEEEEEEESSSCCEE
T ss_pred ccchhhceEEEEEEEeCCCCeE
Confidence 9999999999999999877653
|
| >d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Type-1 interleukin-1 receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.94 E-value=1.6e-09 Score=84.33 Aligned_cols=81 Identities=16% Similarity=0.131 Sum_probs=64.4
Q ss_pred cceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEee----c-----
Q psy7039 122 NDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQT----T----- 192 (516)
Q Consensus 122 ~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~----~----- 192 (516)
..+.+..|+.+.|.|.+. |.|.+.+.|++++..+.......... .
T Consensus 10 ~~i~v~~G~~v~l~C~v~--------------------------g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~~~ 63 (107)
T d1iray3 10 ETMEVDLGSQIQLICNVT--------------------------GQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANK 63 (107)
T ss_dssp EEEECCTTCCEEEEEEEE--------------------------ECTTCEEEEEETTEECCTTCSSEEEEEEEECCSSCG
T ss_pred CEEEEeCCCEEEEEEEec--------------------------cCCCCeEEEEECCcccccccceeeeeeeeeccceee
Confidence 447788999999999999 99999999999999886543322110 0
Q ss_pred ---CCeeEEEeccCCCCCCee-EEEEEEcCCCceEEEEEe
Q psy7039 193 ---KSETVLDIPFCSRSDTGH-YSLTLENNLGTATASAHV 228 (516)
Q Consensus 193 ---~~~~~l~i~~~~~~d~g~-Y~c~~~~~~g~~~~~~~~ 228 (516)
...+.|.|.+++.+|.|. |+|.|.|..|.....+.+
T Consensus 64 ~~~~~~~~L~I~~v~~~D~g~~Y~C~A~N~~G~~~~~i~L 103 (107)
T d1iray3 64 RRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQL 103 (107)
T ss_dssp GGEEEEEEEEESSCCGGGGSSCEEEEEECSSCEEEEEEEE
T ss_pred ecccceEEEEEeecchHHCCcEEEEEEEeCCCeEEEEEEE
Confidence 113589999999999995 999999999988776654
|
| >d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cardiac myosin binding protein C, different domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.94 E-value=2e-09 Score=81.34 Aligned_cols=79 Identities=18% Similarity=0.318 Sum_probs=65.1
Q ss_pred ccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCC-CceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEE
Q psy7039 363 RDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPD-GRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSAS 441 (516)
Q Consensus 363 ~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~-~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s 441 (516)
..+.+..|+.+.|.|.+. .|++.+.|++++..+..+ .++.+...++...|.|.++.. .|+|.|+|.|.| .+.+
T Consensus 14 ~~~~v~~G~~v~l~c~v~-~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~-~D~G~Y~c~a~n----~~~s 87 (94)
T d1pd6a_ 14 PAYQVSKGHKIRLTVELA-DHDAEVKWLKNGQEIQMSGSKYIFESIGAKRTLTISQCSL-ADDAAYQCVVGG----EKCS 87 (94)
T ss_dssp SEEEEETTSCEEEEEECS-SSSSCCEEEESSSEECCCSSSSEEEEETTEEEEEECSCSS-SSCEEEEEEETT----EEEC
T ss_pred CCEEECcCCeEEEEEEEC-CCCceEEEEEcCccceeeeeeEeeeccCCeEEeecCCCCc-eecEEEEEEEee----EEEE
Confidence 346789999999999984 588899999999988654 567777777888999999999 999999999965 3455
Q ss_pred EEEEEe
Q psy7039 442 CKVYVV 447 (516)
Q Consensus 442 ~~l~v~ 447 (516)
+.|.|.
T Consensus 88 ~~l~V~ 93 (94)
T d1pd6a_ 88 TELFVK 93 (94)
T ss_dssp CEEEEE
T ss_pred EEEEEE
Confidence 666664
|
| >d1wk0a_ b.1.2.1 (A:) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.94 E-value=1.8e-09 Score=88.08 Aligned_cols=96 Identities=21% Similarity=0.208 Sum_probs=73.6
Q ss_pred CCCCCCCcceEEEeeeCCeeEEEecCCCCCCCC--------ceeceEEEEEeCCC--CeEEeEEeecCCcEEEeCCCcCC
Q psy7039 11 FDEPGKPTDLEATDWDKDHVDLQWTPPISDGGS--------PITGYVVEMKDKTG--NWEKAVVVPAGETSCTVPGLIEG 80 (516)
Q Consensus 11 ~~~p~~p~~l~~~~~~~~~v~l~W~~p~~~~~~--------~i~~Y~v~~~~~~~--~~~~~~~~~~~~~~~~i~~l~~~ 80 (516)
+..|..|..+.+.+++.++|.|+|.+|..+++. .+..|.+++.+.+. .|..+ ..+..++++|.+|+++
T Consensus 15 ~~~~~~~~~P~V~~v~~~sv~l~W~~P~~~~~~~~~~~~~~~~~~y~v~~~~~~~~~~~~~~--~~~~~~~~~i~~L~P~ 92 (137)
T d1wk0a_ 15 EALLSNIVKPVASDIQARTVVLTWSPPSSLINGETDESSVPELYGYEVLISSTGKDGKYKSV--YVGEETNITLNDLKPA 92 (137)
T ss_dssp HHHTTCCCCCEEESCCSSCEEEECCCCCCCSTTSSCSSCSCSCCEEEEEECSSCTTSCCEEE--EEESCSEEEECSCCTT
T ss_pred ccCCCCCCCCEEEEeEcCEEEEEEeCcCcCCCceeeccccceEEeeEEEEeeCCCCccEEEE--EecCccEEEECCCCCC
Confidence 345666777789999999999999998655443 45678888877554 44443 3457889999999999
Q ss_pred CeEEEEEEEecCCCCCCCCCCCcceEec
Q psy7039 81 ETYQFQVRAVNAAGPGEASKPTAPIVAK 108 (516)
Q Consensus 81 ~~y~~~~~a~n~~g~~~~s~~~~~~~~~ 108 (516)
+.|.|+++|.|..|.+.++......+..
T Consensus 93 t~Y~f~V~A~n~~G~g~~S~~~~~~T~~ 120 (137)
T d1wk0a_ 93 MDYHAKVQAEYNSIKGTPSEAEIFTTLS 120 (137)
T ss_dssp CEECEEEEEEETTEECCCCCCCCEECCC
T ss_pred cEEEEEEEEEcCCcccCCCCCEEEECCC
Confidence 9999999999999998887655544433
|
| >d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Semaphorin 4d Ig-like domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.93 E-value=7.4e-10 Score=83.30 Aligned_cols=79 Identities=11% Similarity=0.087 Sum_probs=62.3
Q ss_pred cccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCC-CceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeE
Q psy7039 362 IRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPD-GRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSA 440 (516)
Q Consensus 362 ~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~-~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~ 440 (516)
.+...+.+|+++.|.|.+.| +.+.+.|++++..+... .++.+. .. ..|.|.++.+ .|+|.|.|.|.|..|....
T Consensus 4 ~~~~~~~~G~~~~l~C~~~g-~~~~v~W~~~g~~l~~~~~~~~~~-~~--~~L~I~~v~~-~DsG~Y~C~A~n~~g~~~~ 78 (92)
T d1olza1 4 YRQHFFKHGGTAELKCSQKS-NLARVFWKFQNGVLKAESPKYGLM-GR--KNLLIFNLSE-GDSGVYQCLSEERVKNKTV 78 (92)
T ss_dssp EEEEEEETTSCEEECCCCSC-TTCEEEEEESSSBCCCCSSSBCCT-TT--TCEEECSCCG-GGCEEEEEEEEEECSSSEE
T ss_pred hhheeEeCCCEEEEEEEeec-cCCceeeecCcccceeeeeeeecc-ee--eEEEECCCCH-HHCcEEEEEEEEcCCCEEE
Confidence 46678999999999999998 77899999999887543 333322 22 2599999999 9999999999999987665
Q ss_pred EEEEE
Q psy7039 441 SCKVY 445 (516)
Q Consensus 441 s~~l~ 445 (516)
+..+.
T Consensus 79 ~~~l~ 83 (92)
T d1olza1 79 FQVVA 83 (92)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 54443
|
| >d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: NT3 binding domain of trkC receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.93 E-value=4.2e-09 Score=81.41 Aligned_cols=65 Identities=26% Similarity=0.256 Sum_probs=53.7
Q ss_pred CcCceeeEEeeCCeeeccCCceEEee----cCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEEeec
Q psy7039 166 SEPFLNHGWSINGQVCQIGGRADVQT----TKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVTG 230 (516)
Q Consensus 166 ~~p~~~i~W~~~~~~~~~~~~~~~~~----~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~~~ 230 (516)
|.|.+.+.|++++..+....+..+.. ....+.|.|.+++.+|+|.|+|.+.|..|....+..+.+
T Consensus 28 G~P~P~v~W~~n~~~i~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~v~V 96 (105)
T d1wwca_ 28 GNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHF 96 (105)
T ss_dssp CSSCCEEEEEETTEECCCSSSEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEEETTEEEEEEEEECC
T ss_pred EeCCCeEEEEeCccccCCCcceeeeEEeecccceEEEEEeecccccceEEEEEEEcCCCEEEEEEEEEE
Confidence 99999999999999998776665432 223467999999999999999999999998887766544
|
| >d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: IgE high affinity receptor alpha subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.92 E-value=1.3e-09 Score=81.49 Aligned_cols=79 Identities=15% Similarity=0.072 Sum_probs=63.2
Q ss_pred ccEEEEcCCeEEEEEEEeeec-CCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCc-eeE
Q psy7039 363 RDMTVLAGEEFTITVPFSGRP-KPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGS-DSA 440 (516)
Q Consensus 363 ~~~~v~~g~~~~l~C~~~g~p-~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~-~s~ 440 (516)
....+.+|+.+.|.|.+.+.+ ...+.|+++|..+.... ....|.|.++.. +|+|.|.|.|.|..|. .+.
T Consensus 8 p~~~V~eG~~v~L~C~~~~~~~~~~~~w~k~g~~~~~~~--------~~~~l~i~~~~~-~dsG~Y~C~a~n~~~~~~S~ 78 (89)
T d1f2qa2 8 SAEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYWY--------ENHNISITNATV-EDSGTYYCTGKVWQLDYESE 78 (89)
T ss_dssp SCSEEETTSCEEEEEEEGGGCCEEEEEEEETTEECCSCC--------CSSEEEESSCCG-GGCEEEEEEEEETTEEEECC
T ss_pred CcCeEeCCCEEEEEEEecCCCCCeEEEEEEeeecccccc--------ccceEEEeeeee-ecCcEEEEEEEeCCCCeEee
Confidence 345689999999999997664 44899999998774322 123689999999 9999999999998876 356
Q ss_pred EEEEEEecCC
Q psy7039 441 SCKVYVVDKP 450 (516)
Q Consensus 441 s~~l~v~~~p 450 (516)
.+.|+|..+|
T Consensus 79 ~v~i~V~~~P 88 (89)
T d1f2qa2 79 PLNITVIKAP 88 (89)
T ss_dssp CEEEEEECSC
T ss_pred eEEEEEEeCC
Confidence 7889998765
|
| >d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: B- and T-lymphocyte attenuator CD272 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.92 E-value=1.5e-09 Score=83.84 Aligned_cols=79 Identities=14% Similarity=0.123 Sum_probs=60.5
Q ss_pred CcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcC-ceeeEEeeCCeeecc--C-CceEEeecC-
Q psy7039 119 STLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEP-FLNHGWSINGQVCQI--G-GRADVQTTK- 193 (516)
Q Consensus 119 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~i~W~~~~~~~~~--~-~~~~~~~~~- 193 (516)
..+....+..|+++.|.|.+. |.| .|.++|++++..+.. . .+......+
T Consensus 8 ~~~~~~~v~~G~~v~L~C~v~--------------------------g~p~~P~v~W~k~~~~~~~~~~~~~~~~~~~~~ 61 (104)
T d2aw2a1 8 KRQSEHSILAGDPFELECPVK--------------------------YCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKN 61 (104)
T ss_dssp CTTEEEEEETTSCEEEEEEEE--------------------------CSSSCCEEEEEEECSSCEEECCSSCEEEEECSS
T ss_pred ecCCeEEEeCCCeEEEEEEEE--------------------------eeCCCCEEEEEecCcccccccceeeeeEEecCC
Confidence 566678899999999999999 888 589999997765532 1 222222222
Q ss_pred -CeeEEEeccCCCCCCeeEEEEEEcCCCceE
Q psy7039 194 -SETVLDIPFCSRSDTGHYSLTLENNLGTAT 223 (516)
Q Consensus 194 -~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~ 223 (516)
....|.|.+++.+|+|.|+|.+.|..|...
T Consensus 62 ~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~ 92 (104)
T d2aw2a1 62 ISFFILHFEPVLPNDNGSYRCSANFQSNLIE 92 (104)
T ss_dssp CEEEEEEESSCCGGGCEEEEEEEEETTEEEE
T ss_pred ceEEEEEEccccHHHCCeEEEEEEcCCCeEE
Confidence 245799999999999999999999888643
|
| >d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fc gamma receptor ectodomain (CD32) species: Human (Homo sapiens), IIb [TaxId: 9606]
Probab=98.92 E-value=1.4e-09 Score=80.99 Aligned_cols=76 Identities=16% Similarity=0.116 Sum_probs=60.6
Q ss_pred cEEEEcCCeEEEEEEEeee-cCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCce-eEE
Q psy7039 364 DMTVLAGEEFTITVPFSGR-PKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSD-SAS 441 (516)
Q Consensus 364 ~~~v~~g~~~~l~C~~~g~-p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~-s~s 441 (516)
...+.+|+.+.|.|.+.+. |.+.+.|++++..+.. ......|.|.++.. .|+|.|.|.|.|..|.. +..
T Consensus 9 ~~~v~eG~~v~L~C~~~~~~p~~~~~W~k~g~~~~~--------~~~~~~l~i~~v~~-~dsG~Y~C~a~n~~g~~~S~~ 79 (88)
T d2fcba2 9 HLEFQEGETIVLRCHSWKDKPLVKVTFFQNGKSKKF--------SRSDPNFSIPQANH-SHSGDYHCTGNIGYTLYSSKP 79 (88)
T ss_dssp CSEECTTCCEEEEEEEGGGCCCEEEEEEETTEEEEE--------ESSCCEEEETTCCG-GGCEEEEEEEEETTEEEECCC
T ss_pred CCeEecCCeEEEEEEecCCCCCcEEEEEeecccccc--------cccccccccCccCH-HHCCeEEEEEEeCCCCEEeee
Confidence 3468899999999999755 5558999999976531 22334699999999 99999999999999874 566
Q ss_pred EEEEEec
Q psy7039 442 CKVYVVD 448 (516)
Q Consensus 442 ~~l~v~~ 448 (516)
+.|+|+.
T Consensus 80 v~l~V~~ 86 (88)
T d2fcba2 80 VTITVQA 86 (88)
T ss_dssp EEEEECC
T ss_pred EEEEEeC
Confidence 8888865
|
| >d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Junction adhesion molecule, JAM, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.91 E-value=1.4e-09 Score=85.04 Aligned_cols=77 Identities=18% Similarity=0.214 Sum_probs=58.8
Q ss_pred eEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCceE--------EeecCCe
Q psy7039 124 VKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRAD--------VQTTKSE 195 (516)
Q Consensus 124 ~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~--------~~~~~~~ 195 (516)
..+.+|+.+.|.|.+.. |.|.+.+.|++++..+....... .......
T Consensus 12 ~~v~~G~~v~L~C~~~~-------------------------g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (110)
T d1f97a2 12 SSVTIGNRAVLTCSEHD-------------------------GSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKS 66 (110)
T ss_dssp SEEETTSCEEEEEECSC-------------------------CBSCCEEEEEETTEESBC-----CBSCSSSCEEECTTT
T ss_pred CEEecCCeEEEEEEeec-------------------------CCCCCEEEEEeCCeEecCCCceeEEeecCceEEEeecc
Confidence 35789999999999751 78999999999998876543222 2223345
Q ss_pred eEEEeccCCCCCCeeEEEEEEcCCCceEEE
Q psy7039 196 TVLDIPFCSRSDTGHYSLTLENNLGTATAS 225 (516)
Q Consensus 196 ~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~ 225 (516)
..|.|.+++.+|+|.|+|.+.|..|....+
T Consensus 67 ~~l~I~~v~~~D~G~Y~C~a~N~~G~~~~s 96 (110)
T d1f97a2 67 GDLIFDPVTAFDSGEYYCQAQNGYGTAMRS 96 (110)
T ss_dssp CCEEESSCCGGGCEEEEEEEECSSSCCEEC
T ss_pred cceEECCCCccCCEEEEEEEEECCCcEEEE
Confidence 689999999999999999999999876543
|
| >d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Type-1 interleukin-1 receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.91 E-value=2.8e-09 Score=82.86 Aligned_cols=82 Identities=21% Similarity=0.245 Sum_probs=64.1
Q ss_pred ccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEEE---EcC---------CeEEEEEcCceecCCce-EEEE
Q psy7039 363 RDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFE---TSE---------NQTIYRNKSAKRATDSG-SYTI 429 (516)
Q Consensus 363 ~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~---~~~---------~~~~l~i~~~~~~~~~g-~y~c 429 (516)
..+.+..|+++.|.|.+.|.|.|.+.|.+++..+......... ... ..+.|.|.++.. .|.| .|.|
T Consensus 10 ~~i~v~~G~~v~l~C~v~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~-~D~g~~Y~C 88 (107)
T d1iray3 10 ETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIES-RFYKHPFTC 88 (107)
T ss_dssp EEEECCTTCCEEEEEEEEECTTCEEEEEETTEECCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCCG-GGGSSCEEE
T ss_pred CEEEEeCCCEEEEEEEeccCCCCeEEEEECCcccccccceeeeeeeeeccceeeecccceEEEEEeecch-HHCCcEEEE
Confidence 3456788999999999999999999999999887544322111 100 125799999999 9999 5999
Q ss_pred EEEcCCCceeEEEEEE
Q psy7039 430 QLVNTVGSDSASCKVY 445 (516)
Q Consensus 430 ~a~n~~G~~s~s~~l~ 445 (516)
.|.|..|..+..+.|.
T Consensus 89 ~A~N~~G~~~~~i~L~ 104 (107)
T d1iray3 89 FAKNTHGIDAAYIQLI 104 (107)
T ss_dssp EEECSSCEEEEEEEEE
T ss_pred EEEeCCCeEEEEEEEE
Confidence 9999999988777664
|
| >d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Junction adhesion molecule, JAM, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.91 E-value=6.2e-10 Score=86.35 Aligned_cols=84 Identities=14% Similarity=0.147 Sum_probs=61.9
Q ss_pred CcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCce--EEee--cC-
Q psy7039 119 STLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRA--DVQT--TK- 193 (516)
Q Consensus 119 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~--~~~~--~~- 193 (516)
.....+.+.+|+++.|.|.+. |.|.+.+.|++++..+...... .... .+
T Consensus 9 ~~~~~v~v~~g~~v~L~C~~~--------------------------g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~ 62 (105)
T d1nbqa1 9 SSEPEVRIPENNPVKLSCAYS--------------------------GFSSPRVEWKFDQGDTTRLVCYNNKITASYEDR 62 (105)
T ss_dssp CSCSBCCEETTCCCEEECEEE--------------------------SCSSEEEEEEEEETTEEEESEETTEECTTTTTT
T ss_pred CCCCeEEEeCCCeEEEEEEeC--------------------------CCCCCeeEEEeeeeceeeeeeccceeeccccce
Confidence 344567799999999999999 9999999999976544321111 1100 00
Q ss_pred ---CeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEEe
Q psy7039 194 ---SETVLDIPFCSRSDTGHYSLTLENNLGTATASAHV 228 (516)
Q Consensus 194 ---~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~ 228 (516)
...+|.|.+++.+|+|.|+|.+.|..|.......+
T Consensus 63 ~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~G~~~~~~~v 100 (105)
T d1nbqa1 63 VTFLPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKV 100 (105)
T ss_dssp CEEETTEEECSCCCTTSCSEEEEEEEETTSSCEECCEE
T ss_pred eeecCceEEEecccccceeeEEEEEEECCCCEEEEEEE
Confidence 12479999999999999999999999987655443
|
| >d2gysa2 b.1.2.1 (A:104-217) Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.90 E-value=5.6e-09 Score=82.08 Aligned_cols=97 Identities=23% Similarity=0.356 Sum_probs=70.6
Q ss_pred CCCCCCcceEEEeeeCCeeEEEecCCCCCCC-----CceeceEEEEEeCCCCe--EEeEEeecCCcEEEeCCCcCCCeEE
Q psy7039 12 DEPGKPTDLEATDWDKDHVDLQWTPPISDGG-----SPITGYVVEMKDKTGNW--EKAVVVPAGETSCTVPGLIEGETYQ 84 (516)
Q Consensus 12 ~~p~~p~~l~~~~~~~~~v~l~W~~p~~~~~-----~~i~~Y~v~~~~~~~~~--~~~~~~~~~~~~~~i~~l~~~~~y~ 84 (516)
-.|+||.+|++. ..++++.|+|.+|...++ ..+..|.|+|+..+..| ..........+.+.+.+|.++..|.
T Consensus 4 vkP~pP~nl~v~-~~~~~~~lsW~~P~~~~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~t~Y~ 82 (114)
T d2gysa2 4 VQPPEPRDLQIS-TDQDHFLLTWSVALGSPQSHWLSPGDLEFEVVYKRLQDSWEDAAILLSNTSQATLGPEHLMPSSTYV 82 (114)
T ss_dssp BCCCCCEEEEEE-EETTEEEEEEECCC-----CCSCGGGEEEEEEEEETTSCSTTCEEEEESSSEEEECTTTCCTTCEEE
T ss_pred ccCCcCCCeEEE-EeCCEEEEECCCCcccccccceeeeEEEEEEEEeccCCceEEEEEeeccCceEEEEeCCCCCCcEEE
Confidence 469999999986 678899999999864433 23567999999877632 2223333456788999999999999
Q ss_pred EEEEEecCCCC---CCCCCCCcceEecc
Q psy7039 85 FQVRAVNAAGP---GEASKPTAPIVAKP 109 (516)
Q Consensus 85 ~~~~a~n~~g~---~~~s~~~~~~~~~~ 109 (516)
|+|+|.|..|. +.+|..+..+...+
T Consensus 83 ~rVRa~~~~g~~~~g~wS~WS~~v~~~t 110 (114)
T d2gysa2 83 ARVRTRLAPGSRLSGRPSKWSPEVCWDS 110 (114)
T ss_dssp EEEEEEECTTSSCCBCCCCCCCCEEEEC
T ss_pred EEEEEEeCCCCCCCCCccCCcCCEeeeC
Confidence 99999998876 34566666665543
|
| >d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: High affinity nerve growth factor receptor TrkA, different domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.90 E-value=2.1e-09 Score=83.42 Aligned_cols=66 Identities=21% Similarity=0.260 Sum_probs=54.2
Q ss_pred CcCceeeEEeeCCeeeccCCceEEeecC-------CeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEEeece
Q psy7039 166 SEPFLNHGWSINGQVCQIGGRADVQTTK-------SETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVTGT 231 (516)
Q Consensus 166 ~~p~~~i~W~~~~~~~~~~~~~~~~~~~-------~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~~~~ 231 (516)
|.|.+.+.|++++..+....+....... ....|.|.++...|+|.|+|.+.|..|....++.+...
T Consensus 26 G~P~P~v~W~~ng~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~A~N~~G~~~~~i~v~v~ 98 (107)
T d1he7a_ 26 GQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFM 98 (107)
T ss_dssp CSSCCEEEEEETTEECCCCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEEEEEETTEEEEEEEEECCC
T ss_pred EecCCeEEEEEeeeEccCccceeeeeeeeeeeeeccceEEEECcccHHHCcEEEEEEEeCCCEEEEEEEEEEE
Confidence 9999999999999999877665544211 23679999999999999999999999998877766543
|
| >d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Semaphorin 4d Ig-like domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.88 E-value=1.7e-09 Score=81.21 Aligned_cols=75 Identities=17% Similarity=0.162 Sum_probs=59.3
Q ss_pred cceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCC-ceEEeecCCeeEEEe
Q psy7039 122 NDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGG-RADVQTTKSETVLDI 200 (516)
Q Consensus 122 ~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~-~~~~~~~~~~~~l~i 200 (516)
+...+.+|+++.|.|.+. + +.+.+.|++++..+.... ++.+. ...+|.|
T Consensus 5 ~~~~~~~G~~~~l~C~~~--------------------------g-~~~~v~W~~~g~~l~~~~~~~~~~---~~~~L~I 54 (92)
T d1olza1 5 RQHFFKHGGTAELKCSQK--------------------------S-NLARVFWKFQNGVLKAESPKYGLM---GRKNLLI 54 (92)
T ss_dssp EEEEEETTSCEEECCCCS--------------------------C-TTCEEEEEESSSBCCCCSSSBCCT---TTTCEEE
T ss_pred hheeEeCCCEEEEEEEee--------------------------c-cCCceeeecCcccceeeeeeeecc---eeeEEEE
Confidence 456789999999999998 7 667999999998886543 33322 2346999
Q ss_pred ccCCCCCCeeEEEEEEcCCCceEEEE
Q psy7039 201 PFCSRSDTGHYSLTLENNLGTATASA 226 (516)
Q Consensus 201 ~~~~~~d~g~Y~c~~~~~~g~~~~~~ 226 (516)
.+++.+|+|.|+|.+.|..|......
T Consensus 55 ~~v~~~DsG~Y~C~A~n~~g~~~~~~ 80 (92)
T d1olza1 55 FNLSEGDSGVYQCLSEERVKNKTVFQ 80 (92)
T ss_dssp CSCCGGGCEEEEEEEEEECSSSEEEE
T ss_pred CCCCHHHCcEEEEEEEEcCCCEEEEE
Confidence 99999999999999999887665443
|
| >d1uena_ b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: KIAA0343 protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.87 E-value=7e-09 Score=82.96 Aligned_cols=96 Identities=22% Similarity=0.309 Sum_probs=73.0
Q ss_pred ccCCCCCC-CCCcceEEEeeeCCeeEEEecCCCC-CCCCceeceEEEEEeCCC-C-------eEEeEEeecCCcEEEeCC
Q psy7039 7 IKNPFDEP-GKPTDLEATDWDKDHVDLQWTPPIS-DGGSPITGYVVEMKDKTG-N-------WEKAVVVPAGETSCTVPG 76 (516)
Q Consensus 7 ~~~~~~~p-~~p~~l~~~~~~~~~v~l~W~~p~~-~~~~~i~~Y~v~~~~~~~-~-------~~~~~~~~~~~~~~~i~~ 76 (516)
-.+.++.| .+|.+|++..+++++|.|+|++|.. ..+..+..|.+.+..... . .............++|.+
T Consensus 7 ~~s~e~~P~~~P~~v~v~~~~~~si~l~W~~p~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 86 (125)
T d1uena_ 7 GHSGEDLPMVAPGNVRVNVVNSTLAEVHWDPVPLKSIRGHLQGYRIYYWKTQSSSKRNRRHIEKKILTFQGSKTHGMLPG 86 (125)
T ss_dssp CCSCCCCCCCCCSSCEEEEEETTEEEEECCCCCHHHHCSCEEEEEEEEEEESCCCCSTTCCCCEEEEEEESSCSEEEEES
T ss_pred ccccCcCCCCCCcccEEEEecCCEEEEEEeCccCCCCCcceeeEEeEEEeecCCccceeecccceEEEeCCCccEEEECC
Confidence 34556666 5899999999999999999999742 234568889888875322 1 122333456778999999
Q ss_pred CcCCCeEEEEEEEecCCCCCCCCCCC
Q psy7039 77 LIEGETYQFQVRAVNAAGPGEASKPT 102 (516)
Q Consensus 77 l~~~~~y~~~~~a~n~~g~~~~s~~~ 102 (516)
|.+++.|.|+|+|.|..|.+.++...
T Consensus 87 L~p~t~Y~~~V~A~n~~G~g~~S~~~ 112 (125)
T d1uena_ 87 LEPFSHYTLNVRVVNGKGEGPASPDR 112 (125)
T ss_dssp CCSSCEEEEEEEEEESSCEEEECCCE
T ss_pred CCCCCEEEEEEEEEeCCcccCCCCCE
Confidence 99999999999999999987776543
|
| >d2cuia1 b.1.2.1 (A:6-106) Tenascin-X {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Tenascin-X species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.87 E-value=1.9e-09 Score=82.81 Aligned_cols=83 Identities=14% Similarity=0.355 Sum_probs=67.3
Q ss_pred CCCCCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCC-C--------eEEeEEeecCCcEEEeCCCcCCCe
Q psy7039 12 DEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTG-N--------WEKAVVVPAGETSCTVPGLIEGET 82 (516)
Q Consensus 12 ~~p~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~-~--------~~~~~~~~~~~~~~~i~~l~~~~~ 82 (516)
+.|.+|.+|++..++++++.|+|++|. +.+.+|.|++..... . ........+...++.|.+|+++..
T Consensus 2 g~Pp~~~~l~v~~~t~~sv~v~W~pp~----~~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~L~p~t~ 77 (101)
T d2cuia1 2 GSRPRLSQLSVTDVTTSSLRLNWEAPP----GAFDSFLLRFGVPSPSTLEPHPRPLLQRELMVPGTRHSAVLRDLRSGTL 77 (101)
T ss_dssp CCCCCCCCCEEESCCSSCEEEECCCCT----TSCSEEEEEEECCCCSSSCCCSSCCCCEEEEEETTCCEEEECSCCTTCE
T ss_pred CCccCCCCcEEEEECCCEEEEEEEecc----ccccceEEEEEecCCCceeeccCCcceeEeecccceeEEEeCCCCcCCE
Confidence 578899999999999999999999863 358899999986432 1 112234456788999999999999
Q ss_pred EEEEEEEecCCCCCCC
Q psy7039 83 YQFQVRAVNAAGPGEA 98 (516)
Q Consensus 83 y~~~~~a~n~~g~~~~ 98 (516)
|.|+|+|.|..|.+.+
T Consensus 78 Y~~~V~a~~~~g~g~~ 93 (101)
T d2cuia1 78 YSLTLYGLRGPHKADS 93 (101)
T ss_dssp EEEEEEEECSSSEEEE
T ss_pred EEEEEEEEeCCcEeCC
Confidence 9999999999887654
|
| >d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Junction adhesion molecule, JAM, N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.87 E-value=8.5e-10 Score=85.03 Aligned_cols=84 Identities=13% Similarity=0.179 Sum_probs=61.2
Q ss_pred CcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccC----CceEEe----
Q psy7039 119 STLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIG----GRADVQ---- 190 (516)
Q Consensus 119 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~----~~~~~~---- 190 (516)
.+...+.+.+|+++.|.|.+. +.|.+.+.|++++...... .+....
T Consensus 6 t~~~~v~v~~G~~v~l~C~~~--------------------------g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~ 59 (102)
T d1f97a1 6 TAQSDVQVPENESIKLTCTYS--------------------------GFSSPRVEWKFVQGSTTALVCYNSQITAPYADR 59 (102)
T ss_dssp CSCSEEEEETTCCEEEECEEE--------------------------SCSSEEEEEEEEETTEEEEEEETTEECGGGTTT
T ss_pred ccCCcEEEeCCCEEEEEEEcC--------------------------CCCCCeEEEEeccccceeeeccccccccceeeE
Confidence 455668899999999999999 9999999999854332211 000000
Q ss_pred ecCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEEe
Q psy7039 191 TTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHV 228 (516)
Q Consensus 191 ~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~ 228 (516)
.....++|.|.+++.+|+|.|+|.+.|..|.......+
T Consensus 60 ~~~~~~tL~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~v 97 (102)
T d1f97a1 60 VTFSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSI 97 (102)
T ss_dssp EEEETTEEEESCCCGGGCEEEEEEEEETTSSSEEEEEE
T ss_pred EEecCCEEEEeECCccCCEEEEEEEEECCCCEEEEEEE
Confidence 01123479999999999999999999999887665443
|
| >d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Type-1 interleukin-1 receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.86 E-value=6e-09 Score=79.78 Aligned_cols=82 Identities=9% Similarity=0.050 Sum_probs=62.9
Q ss_pred cEEEEcCCeEEEEE------EEeeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCc
Q psy7039 364 DMTVLAGEEFTITV------PFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGS 437 (516)
Q Consensus 364 ~~~v~~g~~~~l~C------~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~ 437 (516)
.+.+..|....|.| .+.++|.|.|.|++++..+..+....... .+ .|.|.++.. .|+|.|+|.|.|..|.
T Consensus 8 ~q~~~~g~~~~l~Cp~~~~~~~~~~p~P~i~W~kdg~~l~~~~~~~~~~-~~--~L~I~~v~~-~D~G~Y~C~a~n~~~g 83 (103)
T d1iray2 8 KQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGV-KD--RLIVMNVAE-KHRGNYTCHASYTYLG 83 (103)
T ss_dssp EEEEESSSCEEEECTTGGGGCBTTTBCCCCEEEETTEECCCCSSSEEEE-TT--EEEESSCCG-GGCEEEEEEEEEEETT
T ss_pred EEEEecCCCEEEEcCCccccccCCCCCCEEEEEECCccccCCCcEEEec-CC--EEEEccccc-ccCcEEEEEEEECcCC
Confidence 36788999999999 56799999999999999987655443332 22 599999999 9999999999998765
Q ss_pred e----eEEEEEEEecC
Q psy7039 438 D----SASCKVYVVDK 449 (516)
Q Consensus 438 ~----s~s~~l~v~~~ 449 (516)
. +..+.+.+...
T Consensus 84 ~~~~vt~~i~~~v~~~ 99 (103)
T d1iray2 84 KQYPITRVIEFITLEE 99 (103)
T ss_dssp EEEEEEEEEEEEEECC
T ss_pred EEEEEEEEEEEEECCC
Confidence 3 33444444443
|
| >d1fnla2 b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fc gamma receptor ectodomain (CD32) species: Human (Homo sapiens), III [TaxId: 9606]
Probab=98.86 E-value=2e-09 Score=80.32 Aligned_cols=77 Identities=12% Similarity=0.078 Sum_probs=59.7
Q ss_pred ccEEEEcCCeEEEEEEEeee-cCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCce-eE
Q psy7039 363 RDMTVLAGEEFTITVPFSGR-PKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSD-SA 440 (516)
Q Consensus 363 ~~~~v~~g~~~~l~C~~~g~-p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~-s~ 440 (516)
+...+.+|+.+.|.|.+.+. |.+.+.|+++|..+.. . .....|.|.++.. .|+|.|.|.|.|..|.. +.
T Consensus 10 p~~~v~eG~~v~L~C~~~~~~p~~~~~W~kng~~~~~------~--~~~~~l~I~~v~~-~dsG~Y~C~a~n~~~~~~S~ 80 (89)
T d1fnla2 10 PRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKY------F--HHNSDFHIPKATL-KDSGSYFCRGLVGSKNVSSE 80 (89)
T ss_dssp SCSEEETTCCEEEEEEECTTCCCEEEEEEETTEEEEE------E--EECCCEEESSCCG-GGCEEEEEEEEETTEEEECC
T ss_pred CCCeEccCCeEEEEEEecCCCCCcEEEEEEcccccce------e--ccccccEECccce-eccceEEEEEEeCCCCeEEe
Confidence 34568999999999998754 5558999999976531 1 1223689999999 99999999999998874 56
Q ss_pred EEEEEEec
Q psy7039 441 SCKVYVVD 448 (516)
Q Consensus 441 s~~l~v~~ 448 (516)
.+.|+|+.
T Consensus 81 ~v~itV~E 88 (89)
T d1fnla2 81 TVNITITQ 88 (89)
T ss_dssp CEEEEEEC
T ss_pred eEEEEEEe
Confidence 67888764
|
| >d1uc6a_ b.1.2.1 (A:) Ciliary neurotrophic factor receptor alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Ciliary neurotrophic factor receptor alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.86 E-value=1.2e-08 Score=79.35 Aligned_cols=93 Identities=19% Similarity=0.299 Sum_probs=71.9
Q ss_pred CCCCCCcceEEEee--eCCeeEEEecCCCC--CCCCceeceEEEEEeCCC-CeEEeEEeecCCcEEEeCCCcCCCeEEEE
Q psy7039 12 DEPGKPTDLEATDW--DKDHVDLQWTPPIS--DGGSPITGYVVEMKDKTG-NWEKAVVVPAGETSCTVPGLIEGETYQFQ 86 (516)
Q Consensus 12 ~~p~~p~~l~~~~~--~~~~v~l~W~~p~~--~~~~~i~~Y~v~~~~~~~-~~~~~~~~~~~~~~~~i~~l~~~~~y~~~ 86 (516)
-.|+||.+|++..+ ..+++.|+|.+|.. +....+..|.++++..+. .|..+. ....+++.|.+|.+++.|.|+
T Consensus 6 VkP~PP~~l~v~~~~~~~~~l~l~W~~P~~~~~~~~~~~~y~~~~~~~~~~~~~~~~--~~~~~~~~i~~L~~~t~Y~~r 83 (109)
T d1uc6a_ 6 VKPDPPENVVARPVPSNPRRLEVTWQTPSTWPDPESFPLKFFLRYRPLILDQWQHVE--LSNGTAHTITDAYAGKEYIIQ 83 (109)
T ss_dssp CCCCCCEEEEEEECTTCTTCEEEEEECCTTCCCTTTTTBCEEEEEEESSSCCCCCEE--ESSCSEEEETTCCSSSCEEEE
T ss_pred EECCCCCCCEEEEEecCCCEEEEEEeCCcccCCCCeeEEEEEEEEeecCCCceEEec--cCCceeEEeCCCCCCCEEEEE
Confidence 46999999998765 46789999999853 333456789999988766 676544 346889999999999999999
Q ss_pred EEEecCCCCCCCCCCCcceEe
Q psy7039 87 VRAVNAAGPGEASKPTAPIVA 107 (516)
Q Consensus 87 ~~a~n~~g~~~~s~~~~~~~~ 107 (516)
|+|.|. +.+.++..+..+..
T Consensus 84 VrA~~~-~~g~wS~WS~~~~~ 103 (109)
T d1uc6a_ 84 VAAKDN-EIGTWSDWSVAAHA 103 (109)
T ss_dssp EECCBS-SSCCCCCCCEEEEE
T ss_pred EEEEEC-CCCCcCCCCCCEEe
Confidence 999875 55666776665554
|
| >d2gysa4 b.1.2.1 (A:317-416) Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.85 E-value=4e-09 Score=80.79 Aligned_cols=89 Identities=19% Similarity=0.276 Sum_probs=59.7
Q ss_pred CCCCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCCCe-EEeEEeecCCcEEEeCCCcCCCeEEEEEEEec
Q psy7039 13 EPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNW-EKAVVVPAGETSCTVPGLIEGETYQFQVRAVN 91 (516)
Q Consensus 13 ~p~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~~~-~~~~~~~~~~~~~~i~~l~~~~~y~~~~~a~n 91 (516)
+++|| +|.++. +.+++.|+|.+|...++..+..|+|+|+..++.| ..........+++.|.+|.++..|.|+|+|.+
T Consensus 5 k~~Pp-~l~v~~-~~~s~~l~W~~P~~~~~~~~~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~rVRa~~ 82 (100)
T d2gysa4 5 QMAPP-SLQVTK-DGDSYSLRWETMKMRYEHIDHTFEIQYRKDTATWKDSKTETLQNAHSMALPALEPSTRYWARVRVRT 82 (100)
T ss_dssp CCCCC-EEEEC----CCCEEEEEC--------CEEEEEEEECSSSCSTTSCEEEEESCSEEECCCCCSSCCCEEEEEEEE
T ss_pred cCCCC-ccEEEE-CCCEEEEEEecCcccCCccceEEEEEEeecccceeceeecccCCceEEEeCCCCCCCeEEEEEEEEE
Confidence 45566 788874 5678999999987666667789999999866643 22233345788999999999999999999998
Q ss_pred CCCC--CCCCCCCc
Q psy7039 92 AAGP--GEASKPTA 103 (516)
Q Consensus 92 ~~g~--~~~s~~~~ 103 (516)
..|. +.+|..+.
T Consensus 83 ~~g~~~g~WSeWS~ 96 (100)
T d2gysa4 83 SRTGYNGIWSEWSE 96 (100)
T ss_dssp CCTTCCBCCCCCCC
T ss_pred CCCCCCCCccCCCC
Confidence 7764 45555443
|
| >d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Type-1 interleukin-1 receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.84 E-value=9.9e-10 Score=84.20 Aligned_cols=81 Identities=11% Similarity=-0.005 Sum_probs=61.9
Q ss_pred ceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccC--CceEEeecCCeeEEEe
Q psy7039 123 DVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIG--GRADVQTTKSETVLDI 200 (516)
Q Consensus 123 ~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~--~~~~~~~~~~~~~l~i 200 (516)
.+.+.+|+.+.|.|.+.. +.|.+.++|++++..+... .+.++... ..+|.|
T Consensus 11 ~~~~~~~e~~~l~C~~~~-------------------------~~~~~~i~W~k~~~~~~~~~~~~~~~~~~--~~~L~I 63 (101)
T d1iray1 11 ILVSSANEIDVRPCPLNP-------------------------NEHKGTITWYKDDSKTPVSTEQASRIHQH--KEKLWF 63 (101)
T ss_dssp CEEEETTSCEEECCCCCG-------------------------GGCSSEEEEECSSTTSBCCCCTTSSEEEE--TTEEEE
T ss_pred EEEEeCCCeEEEEeeCCC-------------------------CCCCceEEEEECCcccccccccceEEecc--CCEEEe
Confidence 466788999999998861 6789999999988655432 22223222 348999
Q ss_pred ccCCCCCCeeEEEEEEcCCCceEEEEEeec
Q psy7039 201 PFCSRSDTGHYSLTLENNLGTATASAHVTG 230 (516)
Q Consensus 201 ~~~~~~d~g~Y~c~~~~~~g~~~~~~~~~~ 230 (516)
.+++.+|+|.|+|.+.|..|....++.+.+
T Consensus 64 ~~v~~~D~G~Y~C~a~N~~g~~~~~~~L~V 93 (101)
T d1iray1 64 VPAKVEDSGHYYCVVRNSSYCLRIKISAKF 93 (101)
T ss_dssp TTCCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred ccceecCCEEEEEEEECCCCeEEEEEEEEE
Confidence 999999999999999999998876665544
|
| >d2cspa1 b.1.2.1 (A:8-124) Rim binding protein 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Rim binding protein 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.84 E-value=8.8e-10 Score=87.24 Aligned_cols=95 Identities=24% Similarity=0.377 Sum_probs=66.6
Q ss_pred ccC-CCCCCCCCcceEEEe-eeCCeeEEEecCCCCCC-----CCceeceEEEEEeCCCCeEEeEEeecCCcEEEeCCCcC
Q psy7039 7 IKN-PFDEPGKPTDLEATD-WDKDHVDLQWTPPISDG-----GSPITGYVVEMKDKTGNWEKAVVVPAGETSCTVPGLIE 79 (516)
Q Consensus 7 ~~~-~~~~p~~p~~l~~~~-~~~~~v~l~W~~p~~~~-----~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~i~~l~~ 79 (516)
+++ +.++|++|.++.+.. .++.++.|+|.+|..++ +..|.+|++.+ .+..+........+.+.+.|.+|++
T Consensus 3 ~~T~~~~pp~pP~~v~v~~~~s~~si~vsW~PP~~~~~~~~~~~~i~~Y~v~~--~~~~~~~~~~~~~~~~~~~i~~L~~ 80 (117)
T d2cspa1 3 FSTLPAGPPAPPQDVTVQAGVTPATIRVSWRPPVLTPTGLSNGANVTGYGVYA--KGQRVAEVIFPTADSTAVELVRLRS 80 (117)
T ss_dssp CCCCCCCCCCCCEEEEECCCSSTTEEEEEEECCCCCTTSCSSSSCEEEEEEES--SSSEEEEECCTTCSEEEEESHHHHH
T ss_pred EEeCCCCCCCCCCccEEEEecCCCEEEEEEcCCCccccCcccccceEEEEEEe--ecccceeeeeeccceeeeeccCCCC
Confidence 344 567889999999864 56678999999975332 23345555432 2223333333435567889999999
Q ss_pred CCeEEEEEEEecCCCCCCCCCCCc
Q psy7039 80 GETYQFQVRAVNAAGPGEASKPTA 103 (516)
Q Consensus 80 ~~~y~~~~~a~n~~g~~~~s~~~~ 103 (516)
+..|.|+|+|.|..|.+..|....
T Consensus 81 ~t~Y~v~V~A~n~~G~s~~S~~v~ 104 (117)
T d2cspa1 81 LEAKGVTVRTLSAQGESVDSAVAA 104 (117)
T ss_dssp HTCSCBEEEEEESSCCCCCCSCBC
T ss_pred CcEEEEEEEEEcCCCcCCCCCCEE
Confidence 999999999999999988766543
|
| >d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Junction adhesion molecule, JAM, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.84 E-value=2.1e-09 Score=83.98 Aligned_cols=82 Identities=20% Similarity=0.247 Sum_probs=62.3
Q ss_pred EEEcCCeEEEEEEEe-eecCCceEEEECCeecCCCCc--------eEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCC
Q psy7039 366 TVLAGEEFTITVPFS-GRPKPTPIWTVNGDEVSPDGR--------IKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVG 436 (516)
Q Consensus 366 ~v~~g~~~~l~C~~~-g~p~~~i~W~~~~~~l~~~~~--------~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G 436 (516)
.+..|+.+.|.|.+. |.|.+.+.|++++..+..... ...........|.|.++.. .|+|.|+|.|.|..|
T Consensus 13 ~v~~G~~v~L~C~~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~-~D~G~Y~C~a~N~~G 91 (110)
T d1f97a2 13 SVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTA-FDSGEYYCQAQNGYG 91 (110)
T ss_dssp EEETTSCEEEEEECSCCBSCCEEEEEETTEESBC-----CBSCSSSCEEECTTTCCEEESSCCG-GGCEEEEEEEECSSS
T ss_pred EEecCCeEEEEEEeecCCCCCEEEEEeCCeEecCCCceeEEeecCceEEEeecccceEECCCCc-cCCEEEEEEEEECCC
Confidence 578999999999985 899999999999887643322 1122233345799999999 999999999999999
Q ss_pred cee--EEEEEEEec
Q psy7039 437 SDS--ASCKVYVVD 448 (516)
Q Consensus 437 ~~s--~s~~l~v~~ 448 (516)
... ..+.+.|.+
T Consensus 92 ~~~~s~~v~l~V~~ 105 (110)
T d1f97a2 92 TAMRSEAAHMDAVE 105 (110)
T ss_dssp CCEECCCEEEEEES
T ss_pred cEEEEEEEEEEEEe
Confidence 864 456666654
|
| >d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fc gamma receptor ectodomain (CD32) species: Human (Homo sapiens), IIb [TaxId: 9606]
Probab=98.83 E-value=3.5e-09 Score=78.82 Aligned_cols=66 Identities=17% Similarity=0.375 Sum_probs=53.6
Q ss_pred eEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEeecCCeeEEEeccC
Q psy7039 124 VKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFC 203 (516)
Q Consensus 124 ~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~ 203 (516)
..+.+|+++.|.|.+.+ +.|.+.+.|++++..+.. ......|.|.++
T Consensus 10 ~~v~eG~~v~L~C~~~~-------------------------~~p~~~~~W~k~g~~~~~--------~~~~~~l~i~~v 56 (88)
T d2fcba2 10 LEFQEGETIVLRCHSWK-------------------------DKPLVKVTFFQNGKSKKF--------SRSDPNFSIPQA 56 (88)
T ss_dssp SEECTTCCEEEEEEEGG-------------------------GCCCEEEEEEETTEEEEE--------ESSCCEEEETTC
T ss_pred CeEecCCeEEEEEEecC-------------------------CCCCcEEEEEeecccccc--------cccccccccCcc
Confidence 45789999999999871 456789999999987642 233458999999
Q ss_pred CCCCCeeEEEEEEcCCCce
Q psy7039 204 SRSDTGHYSLTLENNLGTA 222 (516)
Q Consensus 204 ~~~d~g~Y~c~~~~~~g~~ 222 (516)
+.+|+|.|+|.+.|..|..
T Consensus 57 ~~~dsG~Y~C~a~n~~g~~ 75 (88)
T d2fcba2 57 NHSHSGDYHCTGNIGYTLY 75 (88)
T ss_dssp CGGGCEEEEEEEEETTEEE
T ss_pred CHHHCCeEEEEEEeCCCCE
Confidence 9999999999999977643
|
| >d1fnla2 b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fc gamma receptor ectodomain (CD32) species: Human (Homo sapiens), III [TaxId: 9606]
Probab=98.82 E-value=3.4e-09 Score=79.03 Aligned_cols=66 Identities=12% Similarity=0.134 Sum_probs=52.8
Q ss_pred eEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEeecCCeeEEEeccC
Q psy7039 124 VKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFC 203 (516)
Q Consensus 124 ~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~ 203 (516)
..+.+|+++.|+|.+.+ +.|.+.+.|++++..+... .....|.|.++
T Consensus 12 ~~v~eG~~v~L~C~~~~-------------------------~~p~~~~~W~kng~~~~~~--------~~~~~l~I~~v 58 (89)
T d1fnla2 12 WVFKEEDPIHLRCHSWK-------------------------NTALHKVTYLQNGKDRKYF--------HHNSDFHIPKA 58 (89)
T ss_dssp SEEETTCCEEEEEEECT-------------------------TCCCEEEEEEETTEEEEEE--------EECCCEEESSC
T ss_pred CeEccCCeEEEEEEecC-------------------------CCCCcEEEEEEccccccee--------ccccccEECcc
Confidence 45889999999998861 4567799999999876421 12347899999
Q ss_pred CCCCCeeEEEEEEcCCCce
Q psy7039 204 SRSDTGHYSLTLENNLGTA 222 (516)
Q Consensus 204 ~~~d~g~Y~c~~~~~~g~~ 222 (516)
+.+|+|.|.|.+.|..|..
T Consensus 59 ~~~dsG~Y~C~a~n~~~~~ 77 (89)
T d1fnla2 59 TLKDSGSYFCRGLVGSKNV 77 (89)
T ss_dssp CGGGCEEEEEEEEETTEEE
T ss_pred ceeccceEEEEEEeCCCCe
Confidence 9999999999999877643
|
| >d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Type-1 interleukin-1 receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.81 E-value=1.2e-09 Score=83.66 Aligned_cols=84 Identities=17% Similarity=0.122 Sum_probs=66.6
Q ss_pred ccEEEEcCCeEEEEEEEe-eecCCceEEEECCeecCC--CCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCcee
Q psy7039 363 RDMTVLAGEEFTITVPFS-GRPKPTPIWTVNGDEVSP--DGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDS 439 (516)
Q Consensus 363 ~~~~v~~g~~~~l~C~~~-g~p~~~i~W~~~~~~l~~--~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s 439 (516)
..+....|+.+.|.|.+. +.|.+.|.|++++..+.. .....+.... ..|.|.++.. .|+|.|+|.|.|..|...
T Consensus 10 ~~~~~~~~e~~~l~C~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~--~~L~I~~v~~-~D~G~Y~C~a~N~~g~~~ 86 (101)
T d1iray1 10 IILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHK--EKLWFVPAKV-EDSGHYYCVVRNSSYCLR 86 (101)
T ss_dssp CCEEEETTSCEEECCCCCGGGCSSEEEEECSSTTSBCCCCTTSSEEEET--TEEEETTCCG-GGCEEEEEEEEETTEEEE
T ss_pred cEEEEeCCCeEEEEeeCCCCCCCceEEEEECCcccccccccceEEeccC--CEEEecccee-cCCEEEEEEEECCCCeEE
Confidence 446788999999999985 678889999999865432 2222222222 3699999999 999999999999999999
Q ss_pred EEEEEEEecC
Q psy7039 440 ASCKVYVVDK 449 (516)
Q Consensus 440 ~s~~l~v~~~ 449 (516)
.++.|.|...
T Consensus 87 ~~~~L~V~~~ 96 (101)
T d1iray1 87 IKISAKFVEN 96 (101)
T ss_dssp EEEEEEEECC
T ss_pred EEEEEEEEeC
Confidence 9999999854
|
| >d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Junction adhesion molecule, JAM, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.80 E-value=5.5e-10 Score=86.67 Aligned_cols=81 Identities=22% Similarity=0.365 Sum_probs=61.7
Q ss_pred ccccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCC------------CceEEEEcCCeEEEEEcCceecCCceEEE
Q psy7039 361 SIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPD------------GRIKFETSENQTIYRNKSAKRATDSGSYT 428 (516)
Q Consensus 361 ~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~------------~~~~~~~~~~~~~l~i~~~~~~~~~g~y~ 428 (516)
....+.+.+|+++.|.|.+.|.|.|.+.|++++..+... .+.... ...|.|.++.. .|.|.|+
T Consensus 10 ~~~~v~v~~g~~v~L~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~L~I~~v~~-~D~G~Y~ 84 (105)
T d1nbqa1 10 SEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFL----PTGITFKSVTR-EDTGTYT 84 (105)
T ss_dssp SCSBCCEETTCCCEEECEEESCSSEEEEEEEEETTEEEESEETTEECTTTTTTCEEE----TTEEECSCCCT-TSCSEEE
T ss_pred CCCeEEEeCCCeEEEEEEeCCCCCCeeEEEeeeeceeeeeeccceeeccccceeeec----CceEEEecccc-cceeeEE
Confidence 345677899999999999999999999999876433211 111111 13699999999 9999999
Q ss_pred EEEEcCCCceeEEEEEEE
Q psy7039 429 IQLVNTVGSDSASCKVYV 446 (516)
Q Consensus 429 c~a~n~~G~~s~s~~l~v 446 (516)
|.|.|..|.....+.|.+
T Consensus 85 C~a~n~~G~~~~~~~v~v 102 (105)
T d1nbqa1 85 CMVSEEGGNSYGEVKVKL 102 (105)
T ss_dssp EEEEETTSSCEECCEEEC
T ss_pred EEEEECCCCEEEEEEEEE
Confidence 999999999766655544
|
| >d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Junction adhesion molecule, JAM, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.80 E-value=5.9e-10 Score=86.31 Aligned_cols=79 Identities=16% Similarity=0.224 Sum_probs=60.8
Q ss_pred EEEEcCCeEEEEEEE-eeecCCceEEEECCeecCCCCceEEE-------EcCCeEEEEEcCceecCCceEEEEEEEcCCC
Q psy7039 365 MTVLAGEEFTITVPF-SGRPKPTPIWTVNGDEVSPDGRIKFE-------TSENQTIYRNKSAKRATDSGSYTIQLVNTVG 436 (516)
Q Consensus 365 ~~v~~g~~~~l~C~~-~g~p~~~i~W~~~~~~l~~~~~~~~~-------~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G 436 (516)
..+..|+.+.|.|.+ .|.|.+.+.|++++..+....++... .......|.|.++.. .|.|.|+|.|.|..|
T Consensus 12 ~~v~~G~~v~l~C~~~~g~p~p~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~-~D~G~Y~C~a~N~~G 90 (104)
T d1nbqa2 12 SSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSA-SDTGEYSCEARNGYG 90 (104)
T ss_dssp SEEETTSCEEECCCCCSCBSCCEEEEEETTCCCCSCSSSSSSCTTCCCCCCTTTCCEEESSCCG-GGCCCEEEEEECSSS
T ss_pred CEEecCCcEEEEEEeecCCCCCEEEEEECCEEccCCCceeEEeeCCcEEEeecccceEECCCCc-ccCcEEEEEEEECCC
Confidence 467899999999998 58999999999999877543322211 112235689999999 999999999999999
Q ss_pred ceeEEEEE
Q psy7039 437 SDSASCKV 444 (516)
Q Consensus 437 ~~s~s~~l 444 (516)
....+..+
T Consensus 91 ~~~~s~~v 98 (104)
T d1nbqa2 91 TPMTSNAV 98 (104)
T ss_dssp CCEECCCB
T ss_pred ceEEEEEE
Confidence 87655433
|
| >d2dtge3 b.1.2.1 (E:468-592) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Insulin receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.78 E-value=3.2e-09 Score=85.11 Aligned_cols=83 Identities=14% Similarity=0.206 Sum_probs=65.7
Q ss_pred CCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCC-C--------------eE---------EeEEeecCCc
Q psy7039 15 GKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTG-N--------------WE---------KAVVVPAGET 70 (516)
Q Consensus 15 ~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~-~--------------~~---------~~~~~~~~~~ 70 (516)
.+|.+|++...++++|.|+|.+|...++..|.+|.|+|++.+. . |. .........+
T Consensus 3 s~plnl~~~~~sstsv~lsW~pP~~~~~~~i~gY~I~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (125)
T d2dtge3 3 NELLKFSYIRTSFDKILLRWEPYWPPDFRDLLGFMLFYKEAPYQNVTEFDGQDACGSNSWTVVDIDPPLRSNDPKSQNHP 82 (125)
T ss_dssp CCBCCCSEEEECSSCEEEECCCCCSSSCCCEEEECCCSSSCCTTTCCCCCCCCCSCCCCCCCCCSCCEEEECCCCSSSCC
T ss_pred CCCEEEEEEEecCCEEEEEEeCCCccCCCcEEEEEEEEEECCCCceEEEeeccccCCcccceecccCcceeeeecCCccC
Confidence 5789999999999999999999876666779999999876433 1 11 1112234578
Q ss_pred EEEeCCCcCCCeEEEEEEEecCCCCCC
Q psy7039 71 SCTVPGLIEGETYQFQVRAVNAAGPGE 97 (516)
Q Consensus 71 ~~~i~~l~~~~~y~~~~~a~n~~g~~~ 97 (516)
++.|.+|+|++.|.|+|+|.|..|.+.
T Consensus 83 ~~~l~~L~p~T~Y~~~V~A~n~~G~~~ 109 (125)
T d2dtge3 83 GWLMRGLKPWTQYAIFVKTLVTFSDER 109 (125)
T ss_dssp EEEECSCCSSCBCCBEEEECCCCCSSC
T ss_pred EEEECCCccCCEEEEEEEEEeCCCccC
Confidence 899999999999999999999998643
|
| >d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fc gamma receptor ectodomain (CD32) species: Human (Homo sapiens), III [TaxId: 9606]
Probab=98.77 E-value=5.3e-09 Score=77.05 Aligned_cols=72 Identities=13% Similarity=0.070 Sum_probs=55.1
Q ss_pred CCccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeE-EeeCCeeeccCCceEEee
Q psy7039 113 APRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHG-WSINGQVCQIGGRADVQT 191 (516)
Q Consensus 113 ~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~-W~~~~~~~~~~~~~~~~~ 191 (516)
+|.|. ..+....+.+|+.++|.|.+. +.+.+.+. |++++..+..
T Consensus 5 kpvi~-~~P~~~~v~~G~~vtL~C~~~--------------------------~~~~~~~~~~~~~~~~~~~-------- 49 (84)
T d1fnla1 5 KAVVF-LEPQWYSVLEKDSVTLKCQGA--------------------------YSPEDNSTQWFHNESLISS-------- 49 (84)
T ss_dssp CCEEE-EESCCSEEETTCCEEEEEECC--------------------------CBTTBCCCEEEETTEEEES--------
T ss_pred CCEEE-ECCCCcEEeCCCeEEEEEEec--------------------------cCCCCeEEEEeeeceeeee--------
Confidence 34444 455668899999999999999 88877645 5667765542
Q ss_pred cCCeeEEEeccCCCCCCeeEEEEEEcCCCc
Q psy7039 192 TKSETVLDIPFCSRSDTGHYSLTLENNLGT 221 (516)
Q Consensus 192 ~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~ 221 (516)
...+|.|.+++.+|+|.|+|.+.+...+
T Consensus 50 --~~~~l~i~~~~~~d~G~Y~C~a~~s~~S 77 (84)
T d1fnla1 50 --QASSYFIDAATVNDSGEYRCQTNLSTLS 77 (84)
T ss_dssp --SCSEEEESSCCGGGCEEEEEECSSSCCC
T ss_pred --cceeeEecCCcccCCEEEEEEccCCCcc
Confidence 2357999999999999999998875544
|
| >d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Interleukin-6 receptor alpha chain, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.77 E-value=6e-09 Score=78.25 Aligned_cols=72 Identities=18% Similarity=0.169 Sum_probs=57.4
Q ss_pred ccccEEEEcCCeEEEEEEEeeecC-CceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCC
Q psy7039 361 SIRDMTVLAGEEFTITVPFSGRPK-PTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVG 436 (516)
Q Consensus 361 ~~~~~~v~~g~~~~l~C~~~g~p~-~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G 436 (516)
....+.+.+|+.+.|.|.+.+.++ +.|.|++++..+....+.... .+ ..|.|.++.. .|+|.|+|.|.|..+
T Consensus 12 ~~~~v~~~~G~~v~L~C~~~g~~~~~~i~W~k~~~~l~~~~~~~~~-~~--~~L~I~~v~~-~D~G~Y~C~a~n~~~ 84 (93)
T d1n26a1 12 ARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAG-MG--RRLLLRSVQL-HDSGNYSCYRAGRPA 84 (93)
T ss_dssp CTTEEEECTTCCEEEECTTSCTTCCSEEEEEEECSSSSCCCEEEEE-ES--SEEEECSCCG-GGCEEEEEESSSSCS
T ss_pred CCCCEEEeCCCcEEEEEEeecCCCCceEEEEEccccccceeeEEec-CC--CEEEECCCCh-hcCEEEEEEECCccc
Confidence 345678889999999999998776 489999999888655544332 22 3699999999 999999999987653
|
| >d1fyhb1 b.1.2.1 (B:12-109) Interferon-gamma receptor alpha chain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Interferon-gamma receptor alpha chain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.77 E-value=4.3e-09 Score=80.23 Aligned_cols=88 Identities=13% Similarity=0.166 Sum_probs=64.1
Q ss_pred CCCCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCC-Ce-EEeEEeecCCcEEEeCCCcCCCeEEEEEEEe
Q psy7039 13 EPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTG-NW-EKAVVVPAGETSCTVPGLIEGETYQFQVRAV 90 (516)
Q Consensus 13 ~p~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~-~~-~~~~~~~~~~~~~~i~~l~~~~~y~~~~~a~ 90 (516)
+| +|.+|++.+.+... .|+|++|..+++ .+..|.++...... .| ..+.......+.+.+.+|.++..|.|||+|.
T Consensus 1 vP-~P~nv~v~s~n~~~-~L~W~pP~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Y~fRV~A~ 77 (98)
T d1fyhb1 1 VP-TPTNVTIESYNMNP-IVYWEYQIMPQV-PVFTVEVKNYGVKNSEWIDACINISHHYCNISDHVGDPSNSLWVRVKAR 77 (98)
T ss_dssp CC-CCEEEEEECBSSCC-EEEEECCCCSSC-CEEEEEEEETTCSSSCCEEEEEEESSSEEECGGGCCSTTSCEEEEEEEE
T ss_pred Cc-cCCceEEEEeCCcE-EEEECCCCCCCC-CceeEEEEEeccccceeEEeeeecccceeeeEecccCCCCEEEEEEEEE
Confidence 46 79999998776554 699999865554 45555554443333 33 4455565677888999999999999999999
Q ss_pred cCCCCCCCCCCCc
Q psy7039 91 NAAGPGEASKPTA 103 (516)
Q Consensus 91 n~~g~~~~s~~~~ 103 (516)
|..|.+.++....
T Consensus 78 n~~g~S~ws~s~~ 90 (98)
T d1fyhb1 78 VGQKESAYAKSEE 90 (98)
T ss_dssp ETTEECCCEECCC
T ss_pred cCCcccCCccCCC
Confidence 9999888765443
|
| >d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Type-1 interleukin-1 receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.76 E-value=2e-08 Score=76.75 Aligned_cols=78 Identities=6% Similarity=-0.022 Sum_probs=58.3
Q ss_pred eEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEeecCCeeEEEeccC
Q psy7039 124 VKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFC 203 (516)
Q Consensus 124 ~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~ 203 (516)
..+..|....|.|...+ .+-..++|.|.+.|++++..+....+...... ..|.|.++
T Consensus 9 q~~~~g~~~~l~Cp~~~--------------------~~~~~~~p~P~i~W~kdg~~l~~~~~~~~~~~---~~L~I~~v 65 (103)
T d1iray2 9 QKLPVAGDGGLVCPYME--------------------FFKNENNELPKLQWYKDCKPLLLDNIHFSGVK---DRLIVMNV 65 (103)
T ss_dssp EEEESSSCEEEECTTGG--------------------GGCBTTTBCCCCEEEETTEECCCCSSSEEEET---TEEEESSC
T ss_pred EEEecCCCEEEEcCCcc--------------------ccccCCCCCCEEEEEECCccccCCCcEEEecC---CEEEEccc
Confidence 45788999999994320 00111789999999999999976654433322 37999999
Q ss_pred CCCCCeeEEEEEEcCCCceEE
Q psy7039 204 SRSDTGHYSLTLENNLGTATA 224 (516)
Q Consensus 204 ~~~d~g~Y~c~~~~~~g~~~~ 224 (516)
+.+|+|.|+|.+.|..|....
T Consensus 66 ~~~D~G~Y~C~a~n~~~g~~~ 86 (103)
T d1iray2 66 AEKHRGNYTCHASYTYLGKQY 86 (103)
T ss_dssp CGGGCEEEEEEEEEEETTEEE
T ss_pred ccccCcEEEEEEEECcCCEEE
Confidence 999999999999987765543
|
| >d2fcba1 b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fc gamma receptor ectodomain (CD32) species: Human (Homo sapiens), IIb [TaxId: 9606]
Probab=98.76 E-value=5.4e-09 Score=77.24 Aligned_cols=72 Identities=11% Similarity=0.110 Sum_probs=56.0
Q ss_pred CccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCce-eeEEeeCCeeeccCCceEEeec
Q psy7039 114 PRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFL-NHGWSINGQVCQIGGRADVQTT 192 (516)
Q Consensus 114 p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~i~W~~~~~~~~~~~~~~~~~~ 192 (516)
|.|. ..+....+.+|+.++|.|.+. +.+.+ .+.|++++..+..
T Consensus 5 p~i~-~~P~~~~v~~G~~v~L~C~~~--------------------------~~~~~~~~~w~~~g~~~~~--------- 48 (85)
T d2fcba1 5 AVLK-LEPQWINVLQEDSVTLTCRGT--------------------------HSPESDSIQWFHNGNLIPT--------- 48 (85)
T ss_dssp CEEE-EESCCSEEETTCEEEEEEECS--------------------------SCCCTTCCEEEETTEECTT---------
T ss_pred CEEE-ECCCCeEEcCCCeEEEEEEEe--------------------------eccceeEEEeecccccccc---------
Confidence 3344 445567899999999999998 77655 6788889887753
Q ss_pred CCeeEEEeccCCCCCCeeEEEEEEcCCCce
Q psy7039 193 KSETVLDIPFCSRSDTGHYSLTLENNLGTA 222 (516)
Q Consensus 193 ~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~ 222 (516)
....|.|.+++.+|+|.|+|.+.|..++.
T Consensus 49 -~~~~l~i~~v~~~dsG~Y~C~a~ns~~S~ 77 (85)
T d2fcba1 49 -HTQPSYRFKANNNDSGEYTCQTGQTSLSD 77 (85)
T ss_dssp -CCSSEEEEECCGGGCEEEEEECTTSBCCC
T ss_pred -cccceEEeeccccCCcEEEEECCCCcccc
Confidence 23469999999999999999998765544
|
| >d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Junction adhesion molecule, JAM, N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.75 E-value=2.8e-09 Score=81.99 Aligned_cols=81 Identities=21% Similarity=0.355 Sum_probs=61.1
Q ss_pred ccccEEEEcCCeEEEEEEEeeecCCceEEEECCeecC------------CCCceEEEEcCCeEEEEEcCceecCCceEEE
Q psy7039 361 SIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVS------------PDGRIKFETSENQTIYRNKSAKRATDSGSYT 428 (516)
Q Consensus 361 ~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~------------~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~ 428 (516)
....+.+.+|+++.|.|.+.|.|.|.+.|++.+.... ...+.... .++|.|.++.. .|.|.|+
T Consensus 7 ~~~~v~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~tL~I~~v~~-~D~G~Y~ 81 (102)
T d1f97a1 7 AQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFS----SSGITFSSVTR-KDNGEYT 81 (102)
T ss_dssp SCSEEEEETTCCEEEECEEESCSSEEEEEEEEETTEEEEEEETTEECGGGTTTEEEE----TTEEEESCCCG-GGCEEEE
T ss_pred cCCcEEEeCCCEEEEEEEcCCCCCCeEEEEeccccceeeeccccccccceeeEEEec----CCEEEEeECCc-cCCEEEE
Confidence 3456789999999999999999999999998543211 01112211 13699999999 9999999
Q ss_pred EEEEcCCCceeEEEEEEE
Q psy7039 429 IQLVNTVGSDSASCKVYV 446 (516)
Q Consensus 429 c~a~n~~G~~s~s~~l~v 446 (516)
|.|.|..|.....+.+.|
T Consensus 82 C~a~n~~g~~~~~~~v~v 99 (102)
T d1f97a1 82 CMVSEEGGQNYGEVSIHL 99 (102)
T ss_dssp EEEEETTSSSEEEEEEEE
T ss_pred EEEEECCCCEEEEEEEEE
Confidence 999999999766655544
|
| >d2dtge1 b.1.2.1 (E:808-909) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Insulin receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.75 E-value=2.3e-10 Score=88.30 Aligned_cols=89 Identities=24% Similarity=0.351 Sum_probs=68.1
Q ss_pred CCCCCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCC-CeEE--eEEeecCCcEEEeCCCcCCCeEEEEEE
Q psy7039 12 DEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTG-NWEK--AVVVPAGETSCTVPGLIEGETYQFQVR 88 (516)
Q Consensus 12 ~~p~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~-~~~~--~~~~~~~~~~~~i~~l~~~~~y~~~~~ 88 (516)
.+|+.|.++++..+.+++|.|+|.+|..+ ++.|.+|+|+|+..+. .+.. ..........+.+.+|.++ .|.|+++
T Consensus 3 ~~~d~P~~v~~~~~~~~sv~l~W~pP~~~-ng~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~-tY~~rV~ 80 (102)
T d2dtge1 3 KADDIVGPVTHEIFENNVVHLMWQEPKEP-NGLIVLYEVSYRRYGDEELHLCDTRKHFALERGCRLRGLSPG-NYSVRIR 80 (102)
T ss_dssp CCCCCCCCCCCCSSSSSCCCCCCCCCCSC-SSCEEEECCCCBSSSBCCCCCCCCSSSCCCTTCCCCCSCCSS-EECCCCC
T ss_pred CCCCCCCCCEEEEECCCEEEEEEEeCCCC-cceEEEeeeEEEecCCCCceeeeeeecccceEEEEEecccee-eEEEEEE
Confidence 35677778888888999999999998644 4579999999987554 2211 1123345678999999997 5999999
Q ss_pred EecCCCCCCCCCCC
Q psy7039 89 AVNAAGPGEASKPT 102 (516)
Q Consensus 89 a~n~~g~~~~s~~~ 102 (516)
|.|..|.+.++...
T Consensus 81 A~n~~G~g~~S~~v 94 (102)
T d2dtge1 81 ATSLAGNGSWTEPT 94 (102)
T ss_dssp EEETTBCCCCCCCC
T ss_pred EEcCCccCCCCCCE
Confidence 99999998876543
|
| >d1cd9b1 b.1.2.1 (B:1-107) Granulocyte colony-stimulating factor (GC-SF) receptor {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Granulocyte colony-stimulating factor (GC-SF) receptor species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.74 E-value=1.5e-08 Score=78.53 Aligned_cols=83 Identities=18% Similarity=0.259 Sum_probs=61.8
Q ss_pred CCCCCcceEE-EeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCC-----CeEEeEE---eecCCcEEEeCCCcCCCeE
Q psy7039 13 EPGKPTDLEA-TDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTG-----NWEKAVV---VPAGETSCTVPGLIEGETY 83 (516)
Q Consensus 13 ~p~~p~~l~~-~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~-----~~~~~~~---~~~~~~~~~i~~l~~~~~y 83 (516)
+|++|.++++ ..++.++|.|+|.+| .+++++ +.|.+.|..... .+..... .....+++.+.+|++++.|
T Consensus 4 PP~~P~~v~~i~~~~~~sv~~sW~p~-~d~~~~-~~y~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~t~Y 81 (107)
T d1cd9b1 4 PPASPSNLSCLMHLTTNSLVCQWEPG-PETHLP-TSFILKSFRSRADCQYQGDTIPDCVAKKRQNNCSIPRKNLLLYQYM 81 (107)
T ss_dssp CCCCCEEEEEEEETTTTEEEEEEECC-SCCSSC-CEEEEEEEECCGGGCSCCCEEEEEECCTTCCEEEEEGGGCCTTSCE
T ss_pred ccCCCcCCEEEEecCCCEEEEEEcCC-CCCCCC-cceeEEEEEeecccceeeeeeeeeccccCccccEEEcCCCCcCceE
Confidence 6899999996 456788999999987 477766 567666654322 2222222 1235678999999999999
Q ss_pred EEEEEEecCCCCCC
Q psy7039 84 QFQVRAVNAAGPGE 97 (516)
Q Consensus 84 ~~~~~a~n~~g~~~ 97 (516)
.|++.|.|..|.+.
T Consensus 82 ~frV~A~N~~G~s~ 95 (107)
T d1cd9b1 82 AIWVQAENMLGSSE 95 (107)
T ss_dssp EEEEEEEETTEEEE
T ss_pred EEEEEEEeCCcccc
Confidence 99999999999875
|
| >d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Kin of IRRE-like protein 3, KIRREL3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.73 E-value=4.2e-10 Score=88.94 Aligned_cols=87 Identities=21% Similarity=0.273 Sum_probs=66.7
Q ss_pred ccEEEEcCCeEEEEEEEeeecC-CceEEEECCeecCCC--CceEEEE--cC--CeEEEEEcCceecCC-ceEEEEEEEcC
Q psy7039 363 RDMTVLAGEEFTITVPFSGRPK-PTPIWTVNGDEVSPD--GRIKFET--SE--NQTIYRNKSAKRATD-SGSYTIQLVNT 434 (516)
Q Consensus 363 ~~~~v~~g~~~~l~C~~~g~p~-~~i~W~~~~~~l~~~--~~~~~~~--~~--~~~~l~i~~~~~~~~-~g~y~c~a~n~ 434 (516)
....+..|+.+.|.|.+.+.++ +.+.|++++..+... .++.+.. .. ..+.|.|.++.. .| .|.|+|.|.|.
T Consensus 14 ~~~~~~~G~~~~l~C~v~~~~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~-~D~~G~Y~C~A~N~ 92 (115)
T d2crya1 14 QTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVISTLTISNIVR-ADFQTIYNCTAWNS 92 (115)
T ss_dssp CCCCCCTTSCCCCCEEECCSSCCSEEEEESSSCEECSEEETTEEEEEEEETTEEEEEEECTTCCH-HHHHSCEEEEEECS
T ss_pred CCEEEecCCEEEEEEEeecCCCeeEEEEeeeeeeEeeeeeeeEeeeeeccccCcEEEEEEeccch-hcCCeEEEEEEEEC
Confidence 3445678999999999999654 479999999877543 2333322 11 125799999999 87 69999999999
Q ss_pred CCceeEEEEEEEecCC
Q psy7039 435 VGSDSASCKVYVVDKP 450 (516)
Q Consensus 435 ~G~~s~s~~l~v~~~p 450 (516)
.|..+..+.|.|...+
T Consensus 93 ~G~~~~~~~L~V~~~~ 108 (115)
T d2crya1 93 FGSDTEIIRLKEQGSE 108 (115)
T ss_dssp SCEEEEEECCCCSCSS
T ss_pred CCeEEEEEEEEEECCC
Confidence 9999999999887543
|
| >d1f2qa1 b.1.1.4 (A:4-85) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: IgE high affinity receptor alpha subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.72 E-value=5.1e-09 Score=76.75 Aligned_cols=72 Identities=15% Similarity=0.220 Sum_probs=52.2
Q ss_pred CccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceee-EEeeCCeeeccCCceEEeec
Q psy7039 114 PRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNH-GWSINGQVCQIGGRADVQTT 192 (516)
Q Consensus 114 p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i-~W~~~~~~~~~~~~~~~~~~ 192 (516)
|.|. ..+....+.+|+.+.|.|.+. +.|.+.. .|++++..+..
T Consensus 2 P~It-~~P~~~~v~~G~~v~L~C~~~--------------------------~~~~~~~~~~~~~~~~~~~--------- 45 (82)
T d1f2qa1 2 PKVS-LNPPWNRIFKGENVTLTCNGN--------------------------NFFEVSSTKWFHNGSLSEE--------- 45 (82)
T ss_dssp CCCE-EESSCSEEETTCCEEEECCTT--------------------------CC----CCEEEETTEECSC---------
T ss_pred CEEE-EcCCCeEEeCCCeEEEEEEEe--------------------------eeeeecceeeeeeeeeeec---------
Confidence 5555 345567789999999999999 8887754 45677766542
Q ss_pred CCeeEEEeccCCCCCCeeEEEEEEcCCCce
Q psy7039 193 KSETVLDIPFCSRSDTGHYSLTLENNLGTA 222 (516)
Q Consensus 193 ~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~ 222 (516)
....|.|.+++.+|+|.|.|.+.+..+..
T Consensus 46 -~~~~l~i~~v~~~d~G~Y~C~a~~s~~S~ 74 (82)
T d1f2qa1 46 -TNSSLNIVNAKFEDSGEYKCQHQQVNESE 74 (82)
T ss_dssp -CSSEEEECSCCGGGCEEEEEECTTSSCCC
T ss_pred -ccceeEECCCChhhCCcEEEEecCCCCcc
Confidence 34579999999999999999988755443
|
| >d1ujta_ b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: KIAA1568 protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.71 E-value=4.6e-08 Score=77.31 Aligned_cols=82 Identities=23% Similarity=0.325 Sum_probs=64.5
Q ss_pred EeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCC-----CeEEeEEeecCCcEEEeCCCcCCCeEEEEEEEecCCCCCC
Q psy7039 23 TDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTG-----NWEKAVVVPAGETSCTVPGLIEGETYQFQVRAVNAAGPGE 97 (516)
Q Consensus 23 ~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~-----~~~~~~~~~~~~~~~~i~~l~~~~~y~~~~~a~n~~g~~~ 97 (516)
+.+++++|.|+|.+|. + ...|.+|+|.|+..+. .|..........+++.|.+|++++.|.|+++|.|..|.+.
T Consensus 25 ~~~s~tsi~v~W~~p~-~-~~~i~gY~v~y~~~~~~~~~~~~~~~~v~~~~~~s~~i~~L~p~t~Y~f~V~A~n~~G~G~ 102 (120)
T d1ujta_ 25 VVLTPTTVQVTWTVDR-Q-PQFIQGYRVMYRQTSGLQATSSWQNLDAKVPTERSAVLVNLKKGVTYEIKVRPYFNEFQGM 102 (120)
T ss_dssp CCCBTTEEEEEEEESS-C-CSSCCEEEEEEEESSSSSTTTCCEEEECCCTTCCEEEEESCCSSEEEEEEEEEESSSCCCC
T ss_pred EEeCCCeEEEEecCCC-C-CCcEEEEEEEeeecccCCCCcceEEEEeccCceeEEEECCCCCCCEEEEEEEEEeCCcCcC
Confidence 3468899999999974 3 3469999999986432 5666655556788999999999999999999999999988
Q ss_pred CCCCCcceE
Q psy7039 98 ASKPTAPIV 106 (516)
Q Consensus 98 ~s~~~~~~~ 106 (516)
.+......+
T Consensus 103 ~S~~~~~~T 111 (120)
T d1ujta_ 103 DSESKTVRT 111 (120)
T ss_dssp CCCCEEEEE
T ss_pred CCCCEEEEe
Confidence 776444333
|
| >d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: IgE high affinity receptor alpha subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.68 E-value=2e-08 Score=74.69 Aligned_cols=66 Identities=14% Similarity=0.094 Sum_probs=53.1
Q ss_pred ceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEeecCCeeEEEecc
Q psy7039 123 DVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPF 202 (516)
Q Consensus 123 ~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~ 202 (516)
...+.+|+++.|.|.+.+ +.+...+.|++++..+... .....|.|.+
T Consensus 9 ~~~V~eG~~v~L~C~~~~-------------------------~~~~~~~~w~k~g~~~~~~--------~~~~~l~i~~ 55 (89)
T d1f2qa2 9 AEVVMEGQPLFLRCHGWR-------------------------NWDVYKVIYYKDGEALKYW--------YENHNISITN 55 (89)
T ss_dssp CSEEETTSCEEEEEEEGG-------------------------GCCEEEEEEEETTEECCSC--------CCSSEEEESS
T ss_pred cCeEeCCCEEEEEEEecC-------------------------CCCCeEEEEEEeeeccccc--------cccceEEEee
Confidence 355789999999999971 3467799999999877532 2345799999
Q ss_pred CCCCCCeeEEEEEEcCCCc
Q psy7039 203 CSRSDTGHYSLTLENNLGT 221 (516)
Q Consensus 203 ~~~~d~g~Y~c~~~~~~g~ 221 (516)
++.+|+|.|.|.+.|..+.
T Consensus 56 ~~~~dsG~Y~C~a~n~~~~ 74 (89)
T d1f2qa2 56 ATVEDSGTYYCTGKVWQLD 74 (89)
T ss_dssp CCGGGCEEEEEEEEETTEE
T ss_pred eeeecCcEEEEEEEeCCCC
Confidence 9999999999999986653
|
| >d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Kin of IRRE-like protein 3, KIRREL3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.67 E-value=2.6e-09 Score=84.26 Aligned_cols=91 Identities=24% Similarity=0.243 Sum_probs=68.4
Q ss_pred CCCccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCc-CceeeEEeeCCeeeccC--CceE
Q psy7039 112 LAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSE-PFLNHGWSINGQVCQIG--GRAD 188 (516)
Q Consensus 112 ~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~i~W~~~~~~~~~~--~~~~ 188 (516)
.||.|. .+..+.+.+|+.+.|.|.+. +. |.+.+.|++++..+... .++.
T Consensus 6 ~Pp~i~--~~~~~~~~~G~~~~l~C~v~--------------------------~~~p~~~v~W~~~~~~i~~~~~~~~~ 57 (115)
T d2crya1 6 GPPIIS--STQTQHALHGEKGQIKCFIR--------------------------STPPPDRIAWSWKENVLESGTSGRYT 57 (115)
T ss_dssp SSCCEE--EECCCCCCTTSCCCCCEEEC--------------------------CSSCCSEEEEESSSCEECSEEETTEE
T ss_pred cCCEEe--cCCCEEEecCCEEEEEEEee--------------------------cCCCeeEEEEeeeeeeEeeeeeeeEe
Confidence 456554 34567788999999999999 74 56689999999888654 3343
Q ss_pred Eee----cCCeeEEEeccCCCCC-CeeEEEEEEcCCCceEEEEEeec
Q psy7039 189 VQT----TKSETVLDIPFCSRSD-TGHYSLTLENNLGTATASAHVTG 230 (516)
Q Consensus 189 ~~~----~~~~~~l~i~~~~~~d-~g~Y~c~~~~~~g~~~~~~~~~~ 230 (516)
+.. .+..+.|.|.+++..| +|.|+|.|.|..|.....+.+.+
T Consensus 58 ~~~~~~~~~~~s~L~I~~v~~~D~~G~Y~C~A~N~~G~~~~~~~L~V 104 (115)
T d2crya1 58 VETISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKE 104 (115)
T ss_dssp EEEEEETTEEEEEEECTTCCHHHHHSCEEEEEECSSCEEEEEECCCC
T ss_pred eeeeccccCcEEEEEEeccchhcCCeEEEEEEEECCCeEEEEEEEEE
Confidence 332 2223579999999998 69999999999998877765543
|
| >d2dtge2 b.1.2.1 (E:593-807) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Insulin receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.65 E-value=1.3e-08 Score=87.71 Aligned_cols=80 Identities=16% Similarity=0.241 Sum_probs=44.5
Q ss_pred CCCCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCC-CeEEeEEeecCCcEEEeCCCcCCCeEEEEEEEec
Q psy7039 13 EPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTG-NWEKAVVVPAGETSCTVPGLIEGETYQFQVRAVN 91 (516)
Q Consensus 13 ~p~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~-~~~~~~~~~~~~~~~~i~~l~~~~~y~~~~~a~n 91 (516)
.|++|.+|.+..+++++|.|+|.+|...+ +.|.+|.|+|+..+. .+. .....+....+.+...|.+++.|.+
T Consensus 2 ~Ps~P~~~~~~~~s~~si~vsW~pP~~~n-g~i~~Y~V~~~~~~~~~~~------~~~~~~~~~~~~~~~~y~~~v~~~~ 74 (196)
T d2dtge2 2 NPSVPLDPISVSNSSSQIILKWKPPSDPN-GNITHYLVFWERQAEDSEL------FELDYCLKGLKLPSRTWSPPFESED 74 (196)
T ss_dssp CCCCCEEEEEEECSSSCEEEEEECCCCSS-SSCSEEECCEEEECCCCSC------TTCSSSCSCCCCCC-----------
T ss_pred cCcCCcCCEEEeccCCEEEEEEECCCCCC-CcEEEEEEEEEcCCCCCce------eEEeeEEeccccceeEEEEEEEEEc
Confidence 58999999999999999999999987544 579999999887554 221 1122233335567888999999988
Q ss_pred CCCCCCCC
Q psy7039 92 AAGPGEAS 99 (516)
Q Consensus 92 ~~g~~~~s 99 (516)
..+.+...
T Consensus 75 ~~~~~~~~ 82 (196)
T d2dtge2 75 SQKHNQSE 82 (196)
T ss_dssp --------
T ss_pred CCccccCc
Confidence 77665443
|
| >d3d85d3 b.1.2.1 (D:212-305) The p40 domain of interleukin-12 (IL-12 beta chain), domains 2 and 3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: The p40 domain of interleukin-12 (IL-12 beta chain), domains 2 and 3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.62 E-value=1e-07 Score=71.58 Aligned_cols=85 Identities=19% Similarity=0.241 Sum_probs=58.3
Q ss_pred CCCCCcceEEEeee-CCeeEEEecCCCCCC---CCceeceEEEEEeCCC-CeEEeEEeecCCcEEEeCCCcCCCeEEEEE
Q psy7039 13 EPGKPTDLEATDWD-KDHVDLQWTPPISDG---GSPITGYVVEMKDKTG-NWEKAVVVPAGETSCTVPGLIEGETYQFQV 87 (516)
Q Consensus 13 ~p~~p~~l~~~~~~-~~~v~l~W~~p~~~~---~~~i~~Y~v~~~~~~~-~~~~~~~~~~~~~~~~i~~l~~~~~y~~~~ 87 (516)
+|+||.+|++..+. +..+.|+|.+|.... +...+.|+|+|+..+. .|...... ..+.+ +|.++..|.|+|
T Consensus 1 KPdPP~nl~v~~~~~~~~l~v~W~~P~~~~~~~~~~~L~Yev~y~~~~~~~~~~~~~~--~~t~~---~L~p~~~Y~v~V 75 (94)
T d3d85d3 1 KPDPPKNLQLKPLKNSRQVEVSWEYPDTWSTPHSYFSLTFCVQVQGKSKREKKDRVFT--DKTSA---TVICRKNASISV 75 (94)
T ss_dssp CCCCCEEEEEEEC----CEEEEEECCTTSCSCTTTSCEEEEEEEECC------CEEEE--SSSEE---EECCCSSCEEEE
T ss_pred CCCCCcccEEEEecCCCeEEEEecCCCCcCCCCCeEEEEEEEEEEECCCCccEEeccc--cceEE---EecCCCCEEEEE
Confidence 58999999998664 466999999985322 2236899999998666 66544433 23333 467999999999
Q ss_pred EEecCCCCCCCCCCC
Q psy7039 88 RAVNAAGPGEASKPT 102 (516)
Q Consensus 88 ~a~n~~g~~~~s~~~ 102 (516)
+|.+..+.+.+|..+
T Consensus 76 Ra~~~~~~g~WSeWS 90 (94)
T d3d85d3 76 RAQDRYYSSSWSEWA 90 (94)
T ss_dssp EEEESSSCCCCCCCE
T ss_pred EEecCCCCCCCccCc
Confidence 999888888777654
|
| >d1y6kr1 b.1.2.1 (R:2-100) Interleukin-10 receptor 1, IL-10R1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Interleukin-10 receptor 1, IL-10R1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.61 E-value=6.4e-08 Score=73.53 Aligned_cols=87 Identities=21% Similarity=0.270 Sum_probs=64.7
Q ss_pred CCCCCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCC-CeEEeEEee-cC--CcEEEeCCCcCCCeEEEEE
Q psy7039 12 DEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTG-NWEKAVVVP-AG--ETSCTVPGLIEGETYQFQV 87 (516)
Q Consensus 12 ~~p~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~-~~~~~~~~~-~~--~~~~~i~~l~~~~~y~~~~ 87 (516)
++|. |.++++. .....+.|+|++|..+++. ..|.|+++..+. .|..+..-. .. ...+.+.+|.++..|.|||
T Consensus 3 ~lP~-P~nv~~~-s~n~~~~L~W~pp~~~g~~--~~Y~Ve~~~~~~~~W~~v~~c~~~t~~~~~~~~~~l~~~~~Y~fRV 78 (99)
T d1y6kr1 3 ELPS-PPSVWFE-AEFFHHILHWTPIPQQSES--TCYEVALLRYGIESWNSISQCSQTLSYDLTAVTLDLYHSNGYRARV 78 (99)
T ss_dssp CCCC-CSCEEEE-EETTEEEEEECCCTTCCTT--CEEEEEEEETTSCCCEEEEEEESSSEEECGGGGTTGGGSSCEEEEE
T ss_pred cCCC-CCcceEE-EECCEEEEEEcCCCCcCCC--CEEEEEEEECCCcceEEEEeeccccccceeeeeeecCCCCEEEEEE
Confidence 5675 6689987 4456788999998655543 569999998666 898765422 12 3345678999999999999
Q ss_pred EEecCCCCCCCCCCC
Q psy7039 88 RAVNAAGPGEASKPT 102 (516)
Q Consensus 88 ~a~n~~g~~~~s~~~ 102 (516)
+|.|..|.+.++...
T Consensus 79 rA~n~~g~S~Ws~t~ 93 (99)
T d1y6kr1 79 RAVDGSRHSQWTVTN 93 (99)
T ss_dssp EEEETTEECCCEECS
T ss_pred EEEcCCCcCCCcccC
Confidence 999999988775543
|
| >d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C2 set domains domain: Intercellular cell adhesion molecule-1 (ICAM-1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.61 E-value=6.7e-08 Score=73.95 Aligned_cols=74 Identities=8% Similarity=-0.029 Sum_probs=56.1
Q ss_pred cceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCce--eeEEeeCCeeeccCCceEEeecCCeeEEE
Q psy7039 122 NDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFL--NHGWSINGQVCQIGGRADVQTTKSETVLD 199 (516)
Q Consensus 122 ~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~i~W~~~~~~~~~~~~~~~~~~~~~~~l~ 199 (516)
....+.+|+.++|.|.+.+ +.|.+ .+.|++++..+..... ......+.|.
T Consensus 12 ~~~~v~~G~~~~L~C~v~g-------------------------~~P~p~~~v~W~~~~~~l~~~~~---~~~~~~s~l~ 63 (103)
T d1iama1 12 LPSWQPVGKQLTLRCQVEG-------------------------GAPRAQLTVVLLRGEKELKREPA---VGEPAEVTTT 63 (103)
T ss_dssp CCSEECTTSEEEEEEEEEC-------------------------CBCGGGEEEEEEETTEEEEEEEC---CTTTEEEEEE
T ss_pred CCceEeCCCEEEEEEEecC-------------------------CCCCCceEEEEcccccccccccc---ccccceEEEE
Confidence 3456889999999999992 35554 6789999988853211 1233456899
Q ss_pred eccCCCCCCeeEEEEEEcCCCceE
Q psy7039 200 IPFCSRSDTGHYSLTLENNLGTAT 223 (516)
Q Consensus 200 i~~~~~~d~g~Y~c~~~~~~g~~~ 223 (516)
|.....+|.|.|+|.|+|..|...
T Consensus 64 i~~~~~dd~g~ytC~A~n~~g~~~ 87 (103)
T d1iama1 64 VLVRRDHHGAQFSCRTELDLRPQG 87 (103)
T ss_dssp EECCSSCSSCEEEEEEEEECGGGT
T ss_pred EeeehhHCCCEEEEEEEeCCCCcc
Confidence 999999999999999999877653
|
| >d2fcba1 b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fc gamma receptor ectodomain (CD32) species: Human (Homo sapiens), IIb [TaxId: 9606]
Probab=98.60 E-value=2.2e-08 Score=73.86 Aligned_cols=72 Identities=26% Similarity=0.306 Sum_probs=56.6
Q ss_pred ccEEEEcCCeEEEEEEEeeecCC-ceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEE
Q psy7039 363 RDMTVLAGEEFTITVPFSGRPKP-TPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSAS 441 (516)
Q Consensus 363 ~~~~v~~g~~~~l~C~~~g~p~~-~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s 441 (516)
....+.+|+.++|.|.+.+.+.+ .+.|++++..+.... ..|.|.++.. .|+|.|+|.|.|..++. .
T Consensus 12 ~~~~v~~G~~v~L~C~~~~~~~~~~~~w~~~g~~~~~~~----------~~l~i~~v~~-~dsG~Y~C~a~ns~~S~--~ 78 (85)
T d2fcba1 12 QWINVLQEDSVTLTCRGTHSPESDSIQWFHNGNLIPTHT----------QPSYRFKANN-NDSGEYTCQTGQTSLSD--P 78 (85)
T ss_dssp CCSEEETTCEEEEEEECSSCCCTTCCEEEETTEECTTCC----------SSEEEEECCG-GGCEEEEEECTTSBCCC--C
T ss_pred CCeEEcCCCeEEEEEEEeeccceeEEEeecccccccccc----------cceEEeeccc-cCCcEEEEECCCCcccc--c
Confidence 44678999999999999998877 689999998775432 3588889999 99999999998876544 3
Q ss_pred EEEEEe
Q psy7039 442 CKVYVV 447 (516)
Q Consensus 442 ~~l~v~ 447 (516)
+.|+|.
T Consensus 79 v~l~V~ 84 (85)
T d2fcba1 79 VHLTVL 84 (85)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 455553
|
| >d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD2-binding domain of CD58, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.60 E-value=2.7e-08 Score=74.86 Aligned_cols=76 Identities=16% Similarity=0.057 Sum_probs=56.3
Q ss_pred ceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccC----------CceEEeec
Q psy7039 123 DVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIG----------GRADVQTT 192 (516)
Q Consensus 123 ~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~----------~~~~~~~~ 192 (516)
.+....|++++|.|... .|.+.|.|++++..+... .+.++...
T Consensus 4 ~v~~~~G~sVtl~c~~~---------------------------~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 56 (93)
T d1ccza1 4 QIYGVVYGNVTFHVPSN---------------------------VPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLD 56 (93)
T ss_dssp EEEEETTCCEEECCCCS---------------------------SCCSCEEEEETTEEEEEEETTEEEECGGGTTSEEEC
T ss_pred EEEEEECCCEEEEecCC---------------------------CCCcEEEEEEeccccceeeecceeeCCCccceEEEc
Confidence 46788999999999865 577889999988765321 11222223
Q ss_pred CCeeEEEeccCCCCCCeeEEEEEEcCCCceEEE
Q psy7039 193 KSETVLDIPFCSRSDTGHYSLTLENNLGTATAS 225 (516)
Q Consensus 193 ~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~ 225 (516)
....+|.|.+++.+|+|.|+|.+.|..+.....
T Consensus 57 ~~~~sL~I~~l~~~DsG~Y~c~~~n~~~t~~~~ 89 (93)
T d1ccza1 57 TVSGSLTIYNLTSSDEDEYEMESPNITDTMKFF 89 (93)
T ss_dssp TTTCCEEECSCCGGGCEEEEEECTTCCSCEEEE
T ss_pred CCeeEEEEEecChhhCEEEEEEEECCCcEEEEE
Confidence 456789999999999999999998876655443
|
| >d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Hemolin species: Moth (Hyalophora cecropia) [TaxId: 7123]
Probab=98.59 E-value=1.3e-08 Score=79.31 Aligned_cols=83 Identities=14% Similarity=0.255 Sum_probs=58.9
Q ss_pred ccEEEEcCCeEEEEEEE-eeecCCceEEEECCeecCCCCc-----eEEEEcCCeEEEEEcCceecCCce---EEEEEEEc
Q psy7039 363 RDMTVLAGEEFTITVPF-SGRPKPTPIWTVNGDEVSPDGR-----IKFETSENQTIYRNKSAKRATDSG---SYTIQLVN 433 (516)
Q Consensus 363 ~~~~v~~g~~~~l~C~~-~g~p~~~i~W~~~~~~l~~~~~-----~~~~~~~~~~~l~i~~~~~~~~~g---~y~c~a~n 433 (516)
.+..+.+|+.+.|.|.+ .|.|.|.+.|++++..+..... ..... .....|.|.++.. .|+| .|.|.|.|
T Consensus 10 ~~~t~~EG~~~~L~C~v~~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~-~~~~~L~i~~v~~-~D~gd~g~Y~C~A~N 87 (111)
T d1biha2 10 HEKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITA-GPDGNLYFTIVTK-EDVSDIYKYVCTAKN 87 (111)
T ss_dssp EEECCBTTEEEEECCCCCEEESCCEEEEEEEETTSCGGGCCCCCCTTEEE-CTTSCEEEEEECG-GGCCSSEEEEEEEEC
T ss_pred ccccccCCCeEEEEEEcccCCCCCEEEEEeCCccccccccceeeeeeecc-ccccccEEeeeEe-eccCCceEEEEEEEe
Confidence 34456789999999986 8999999999998765432211 11111 1223588888888 7766 79999999
Q ss_pred CCCceeEEEEEEEe
Q psy7039 434 TVGSDSASCKVYVV 447 (516)
Q Consensus 434 ~~G~~s~s~~l~v~ 447 (516)
..|.......+.+.
T Consensus 88 ~~g~~~~~~~~~~i 101 (111)
T d1biha2 88 AAVDEEVVLVEYEI 101 (111)
T ss_dssp TTCSSCEEEEEEEE
T ss_pred CCCCceEEEEEEEe
Confidence 99987666544443
|
| >d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C2 set domains domain: Intercellular cell adhesion molecule-1 (ICAM-1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.58 E-value=2.8e-08 Score=76.12 Aligned_cols=80 Identities=8% Similarity=0.066 Sum_probs=60.4
Q ss_pred cEEEEcCCeEEEEEEEee-ecCC--ceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeE
Q psy7039 364 DMTVLAGEEFTITVPFSG-RPKP--TPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSA 440 (516)
Q Consensus 364 ~~~v~~g~~~~l~C~~~g-~p~~--~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~ 440 (516)
...+..|+.++|.|.+.| .|.+ .+.|++++..+..... ........|.|..... +|.|.|+|.|.|.+|....
T Consensus 13 ~~~v~~G~~~~L~C~v~g~~P~p~~~v~W~~~~~~l~~~~~---~~~~~~s~l~i~~~~~-dd~g~ytC~A~n~~g~~~~ 88 (103)
T d1iama1 13 PSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREPA---VGEPAEVTTTVLVRRD-HHGAQFSCRTELDLRPQGL 88 (103)
T ss_dssp CSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEEC---CTTTEEEEEEEECCSS-CSSCEEEEEEEEECGGGTS
T ss_pred CceEeCCCEEEEEEEecCCCCCCceEEEEcccccccccccc---ccccceEEEEEeeehh-HCCCEEEEEEEeCCCCccC
Confidence 346789999999999986 4545 5789999987743211 1112235789988888 9999999999999999877
Q ss_pred EEEEEEe
Q psy7039 441 SCKVYVV 447 (516)
Q Consensus 441 s~~l~v~ 447 (516)
...+.+.
T Consensus 89 ~~~~~~s 95 (103)
T d1iama1 89 ELFENTS 95 (103)
T ss_dssp CEEEEEC
T ss_pred eEeeeEc
Confidence 7777664
|
| >d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fc gamma receptor ectodomain (CD32) species: Human (Homo sapiens), III [TaxId: 9606]
Probab=98.57 E-value=4e-08 Score=72.15 Aligned_cols=65 Identities=23% Similarity=0.231 Sum_probs=51.6
Q ss_pred cccEEEEcCCeEEEEEEEeeecCCc-eEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCc
Q psy7039 362 IRDMTVLAGEEFTITVPFSGRPKPT-PIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGS 437 (516)
Q Consensus 362 ~~~~~v~~g~~~~l~C~~~g~p~~~-i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~ 437 (516)
+....+.+|++++|.|.+.|.+.+. +.|++++..+.. ....|.|.++.. .|+|.|+|.|.|..++
T Consensus 12 P~~~~v~~G~~vtL~C~~~~~~~~~~~~~~~~~~~~~~----------~~~~l~i~~~~~-~d~G~Y~C~a~~s~~S 77 (84)
T d1fnla1 12 PQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISS----------QASSYFIDAATV-NDSGEYRCQTNLSTLS 77 (84)
T ss_dssp SCCSEEETTCCEEEEEECCCBTTBCCCEEEETTEEEES----------SCSEEEESSCCG-GGCEEEEEECSSSCCC
T ss_pred CCCcEEeCCCeEEEEEEeccCCCCeEEEEeeeceeeee----------cceeeEecCCcc-cCCEEEEEEccCCCcc
Confidence 3456899999999999999999884 667777765432 223699999999 9999999999876544
|
| >d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Hemolin species: Moth (Hyalophora cecropia) [TaxId: 7123]
Probab=98.55 E-value=9.5e-09 Score=80.01 Aligned_cols=79 Identities=14% Similarity=0.109 Sum_probs=58.0
Q ss_pred cceEEecCCeEEEEEee-eeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEe----ecCCee
Q psy7039 122 NDVKIKAGQSFSFDVKE-FRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQ----TTKSET 196 (516)
Q Consensus 122 ~~~~v~~g~~~~l~C~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~----~~~~~~ 196 (516)
....+.+|+.+.|.|.+ . |.|.+.+.|++++..+....+.... ......
T Consensus 10 ~~~t~~EG~~~~L~C~v~~--------------------------G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~ 63 (111)
T d1biha2 10 HEKTPIEGRPFQLDCVLPN--------------------------AYPKPLITWKKRLSGADPNADVTDFDRRITAGPDG 63 (111)
T ss_dssp EEECCBTTEEEEECCCCCE--------------------------EESCCEEEEEEEETTSCGGGCCCCCCTTEEECTTS
T ss_pred ccccccCCCeEEEEEEccc--------------------------CCCCCEEEEEeCCccccccccceeeeeeecccccc
Confidence 34556799999999986 7 8999999999987665432211111 122345
Q ss_pred EEEeccCCCCCCe---eEEEEEEcCCCceEEEE
Q psy7039 197 VLDIPFCSRSDTG---HYSLTLENNLGTATASA 226 (516)
Q Consensus 197 ~l~i~~~~~~d~g---~Y~c~~~~~~g~~~~~~ 226 (516)
+|.|.+++..|+| .|.|.|.|..|......
T Consensus 64 ~L~i~~v~~~D~gd~g~Y~C~A~N~~g~~~~~~ 96 (111)
T d1biha2 64 NLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVL 96 (111)
T ss_dssp CEEEEEECGGGCCSSEEEEEEEECTTCSSCEEE
T ss_pred ccEEeeeEeeccCCceEEEEEEEeCCCCceEEE
Confidence 7999999998877 69999999988775543
|
| >d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C2 set domains domain: Intercellular cell adhesion molecule-2 (ICAM-2) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.54 E-value=3.6e-08 Score=76.00 Aligned_cols=77 Identities=12% Similarity=0.078 Sum_probs=54.8
Q ss_pred cccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCc--CceeeEEeeCCeeeccCCceEEee--cCCe
Q psy7039 120 TLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSE--PFLNHGWSINGQVCQIGGRADVQT--TKSE 195 (516)
Q Consensus 120 ~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--p~~~i~W~~~~~~~~~~~~~~~~~--~~~~ 195 (516)
.+....+.+|+.++|.|.+.| +. |.+.|.|++++..+.......... ....
T Consensus 8 ~~~p~~v~~G~~v~l~C~v~g-------------------------~~p~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~ 62 (106)
T d1zxqa1 8 TLQPTLVAVGKSFTIECRVPT-------------------------VEPLDSLTLFLFRGNETLHYETFGKAAPAPQEAT 62 (106)
T ss_dssp EEESSEECTTSEEEEEEEECS-------------------------CBCGGGEEEEEEETTEEEEEEECCSSTTCTTCEE
T ss_pred cCCCCEEeCCCEEEEEEEEeC-------------------------cccCCCceEEEEcCCEEeeecccceEeeccccee
Confidence 344467889999999999982 34 556899999999886433222221 2223
Q ss_pred eEEEeccCCCCCCeeEEEEEEcCCCc
Q psy7039 196 TVLDIPFCSRSDTGHYSLTLENNLGT 221 (516)
Q Consensus 196 ~~l~i~~~~~~d~g~Y~c~~~~~~g~ 221 (516)
+.|.|.....+|.|.|+|.|.|..+.
T Consensus 63 s~l~~~~~~~d~g~~ytC~A~n~~~~ 88 (106)
T d1zxqa1 63 ATFNSTADREDGHRNFSCLAVLDLMS 88 (106)
T ss_dssp EEEEEECCGGGGGCEEEEEEEEECGG
T ss_pred EEEEEeeehhcCCcEEEEEEEecCCC
Confidence 46777777788888999999987654
|
| >d1f2qa1 b.1.1.4 (A:4-85) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: IgE high affinity receptor alpha subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.51 E-value=4.7e-08 Score=71.39 Aligned_cols=72 Identities=22% Similarity=0.195 Sum_probs=53.6
Q ss_pred ccEEEEcCCeEEEEEEEeeecCC-ceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEE
Q psy7039 363 RDMTVLAGEEFTITVPFSGRPKP-TPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSAS 441 (516)
Q Consensus 363 ~~~~v~~g~~~~l~C~~~g~p~~-~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s 441 (516)
....+.+|+.+.|.|.+.+.|.+ .+.|++++..+... ...|.|.++.. +|+|.|.|.|.|..++. .
T Consensus 9 ~~~~v~~G~~v~L~C~~~~~~~~~~~~~~~~~~~~~~~----------~~~l~i~~v~~-~d~G~Y~C~a~~s~~S~--~ 75 (82)
T d1f2qa1 9 PWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEET----------NSSLNIVNAKF-EDSGEYKCQHQQVNESE--P 75 (82)
T ss_dssp SCSEEETTCCEEEECCTTCC----CCEEEETTEECSCC----------SSEEEECSCCG-GGCEEEEEECTTSSCCC--C
T ss_pred CCeEEeCCCeEEEEEEEeeeeeecceeeeeeeeeeecc----------cceeEECCCCh-hhCCcEEEEecCCCCcc--c
Confidence 44678999999999999999887 56778888766432 23699999999 99999999998865544 4
Q ss_pred EEEEEe
Q psy7039 442 CKVYVV 447 (516)
Q Consensus 442 ~~l~v~ 447 (516)
+.|+|.
T Consensus 76 v~l~V~ 81 (82)
T d1f2qa1 76 VYLEVF 81 (82)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 556554
|
| >d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C2 set domains domain: Intercellular cell adhesion molecule-2 (ICAM-2) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.43 E-value=4.1e-08 Score=75.66 Aligned_cols=82 Identities=12% Similarity=0.081 Sum_probs=56.6
Q ss_pred cEEEEcCCeEEEEEEEee-e--cCCceEEEECCeecCCCCceEEEEc--CCeEEEEEcCceecCCceEEEEEEEcCCCce
Q psy7039 364 DMTVLAGEEFTITVPFSG-R--PKPTPIWTVNGDEVSPDGRIKFETS--ENQTIYRNKSAKRATDSGSYTIQLVNTVGSD 438 (516)
Q Consensus 364 ~~~v~~g~~~~l~C~~~g-~--p~~~i~W~~~~~~l~~~~~~~~~~~--~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~ 438 (516)
...+..|+.++|.|.+.| . |.+.|.|++++..+........... .....|.|..... +|.|.|+|.|.|..|..
T Consensus 11 p~~v~~G~~v~l~C~v~g~~p~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~s~l~~~~~~~-d~g~~ytC~A~n~~~~~ 89 (106)
T d1zxqa1 11 PTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAPQEATATFNSTADRE-DGHRNFSCLAVLDLMSR 89 (106)
T ss_dssp SSEECTTSEEEEEEEECSCBCGGGEEEEEEETTEEEEEEECCSSTTCTTCEEEEEEEECCGG-GGGCEEEEEEEEECGGG
T ss_pred CCEEeCCCEEEEEEEEeCcccCCCceEEEEcCCEEeeecccceEeecccceeEEEEEeeehh-cCCcEEEEEEEecCCCC
Confidence 346789999999999986 4 3447999999987743221111111 1224577777677 88889999999999876
Q ss_pred eEEEEEEE
Q psy7039 439 SASCKVYV 446 (516)
Q Consensus 439 s~s~~l~v 446 (516)
.....+.+
T Consensus 90 ~~~~~~~~ 97 (106)
T d1zxqa1 90 GGNIFHKH 97 (106)
T ss_dssp TCCEEEEE
T ss_pred CCeeEecc
Confidence 65555554
|
| >d2crza1 b.1.2.1 (A:8-104) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.39 E-value=4.4e-07 Score=68.44 Aligned_cols=85 Identities=18% Similarity=0.251 Sum_probs=58.9
Q ss_pred eeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEEEEc
Q psy7039 328 TTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETS 407 (516)
Q Consensus 328 ~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~ 407 (516)
.....+++.|+|.+|..++|.+|++|. |.+...+. ........
T Consensus 12 ~~~~~~sv~l~W~~P~~~gg~~i~~Y~--------------------------------v~~~~~~~-----~~~~~~~~ 54 (97)
T d2crza1 12 GRPKAKEIQLRWGPPLVDGGSPISCYS--------------------------------VEMSPIEK-----DEPREVYQ 54 (97)
T ss_dssp SCCCSSEEEEECCCCSCCTTSCCCEEE--------------------------------EEEECTTS-----CCCEEEEE
T ss_pred eeeeCCEEEEEEeCCCcCCCCceeEEE--------------------------------EEEEcCcC-----CceeEeec
Confidence 345778999999999999999999883 11111110 11111122
Q ss_pred CCeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEEEEecCC
Q psy7039 408 ENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKP 450 (516)
Q Consensus 408 ~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~v~~~p 450 (516)
.....++|.+|.+ ...|.|+++|.|..|.+..+..+.+.+.|
T Consensus 55 ~~~~~~~v~~L~p-~t~Y~frV~A~N~~G~s~~S~~~~~~T~p 96 (97)
T d2crza1 55 GSEVECTVSSLLP-GKTYSFRLRAANKMGFGPFSEKCDITTAP 96 (97)
T ss_dssp ESCSEEEEESCCT-TCEEEECCEEECSSCBCCCCCCEEEECCC
T ss_pred CCceEEEEcCCCC-CEEEEEEEEEecCCeEcCCcCCCeEEeCc
Confidence 3345688999999 99999999999999987766666665543
|
| >d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD2-binding domain of CD58, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.38 E-value=1.4e-07 Score=70.65 Aligned_cols=80 Identities=15% Similarity=0.191 Sum_probs=57.4
Q ss_pred ccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCC----------CCceEEEEcCCeEEEEEcCceecCCceEEEEEEE
Q psy7039 363 RDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSP----------DGRIKFETSENQTIYRNKSAKRATDSGSYTIQLV 432 (516)
Q Consensus 363 ~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~----------~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~ 432 (516)
+.+....|.+++|.|... .|.+.|.|++++..+.. ..+..........+|+|.++.+ .|+|.|.|.|.
T Consensus 3 ~~v~~~~G~sVtl~c~~~-~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~l~~-~DsG~Y~c~~~ 80 (93)
T d1ccza1 3 QQIYGVVYGNVTFHVPSN-VPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTS-SDEDEYEMESP 80 (93)
T ss_dssp EEEEEETTCCEEECCCCS-SCCSCEEEEETTEEEEEEETTEEEECGGGTTSEEECTTTCCEEECSCCG-GGCEEEEEECT
T ss_pred cEEEEEECCCEEEEecCC-CCCcEEEEEEeccccceeeecceeeCCCccceEEEcCCeeEEEEEecCh-hhCEEEEEEEE
Confidence 346788999999999864 57779999998865421 1111122233445799999999 99999999999
Q ss_pred cCCCceeEEEEEEE
Q psy7039 433 NTVGSDSASCKVYV 446 (516)
Q Consensus 433 n~~G~~s~s~~l~v 446 (516)
|..++.. +.|+|
T Consensus 81 n~~~t~~--~~l~V 92 (93)
T d1ccza1 81 NITDTMK--FFLYV 92 (93)
T ss_dssp TCCSCEE--EEEEE
T ss_pred CCCcEEE--EEEEE
Confidence 8877554 44444
|
| >d1x5xa1 b.1.2.1 (A:8-103) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.32 E-value=2.3e-06 Score=64.10 Aligned_cols=89 Identities=15% Similarity=0.112 Sum_probs=63.4
Q ss_pred ceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEE
Q psy7039 325 IDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKF 404 (516)
Q Consensus 325 ~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~ 404 (516)
+.+..++.+++.|+|.+|..++|..+.+|. .+.+... .......
T Consensus 7 ~~v~~~~~~si~l~W~~p~~~~~~~~~~y~---------------------------------~~~~~~~---~~~~~~~ 50 (96)
T d1x5xa1 7 PVLTKAGITWLSLQWSKPSGTPSDEGISYI---------------------------------LEMEEET---SGYGFKP 50 (96)
T ss_dssp CEEEEECSSEEEEECCCCSSCCSSSSCEEE---------------------------------EEECCSS---SSCCCEE
T ss_pred CEEEEecCCEEEEEEEeecccCcceEeeeE---------------------------------EEeeecc---ceeeeEE
Confidence 778889999999999999998888887762 1111110 0111112
Q ss_pred EEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEEEEecCC
Q psy7039 405 ETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKP 450 (516)
Q Consensus 405 ~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~v~~~p 450 (516)
........++|.+|.+ ...|.|++.|.|..|.+..+..+.+.+.|
T Consensus 51 ~~~~~~~~~~v~~L~p-~t~Y~~rV~A~n~~G~s~~S~~~~~~T~p 95 (96)
T d1x5xa1 51 KYDGEDLAYTVKNLRR-STKYKFKVIAYNSEGKSNPSEVVEFTTCP 95 (96)
T ss_dssp EEEESCSEEEEESCCS-SCEEEEEEEEECSSCEEEECCCEEEECCC
T ss_pred eecCCCCEEEECCCCC-CCEEEEEEEEEcCCcEeCCCCCEEEEeCc
Confidence 2223345688999999 99999999999999987777777776655
|
| >d1x5ya1 b.1.2.1 (A:8-105) Myosin binding protein C, fast-type {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Myosin binding protein C, fast-type species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.29 E-value=3.4e-07 Score=69.28 Aligned_cols=47 Identities=32% Similarity=0.541 Sum_probs=41.6
Q ss_pred CCCCCCCCcccccccCCeEEEEeeCCCCCCCCCcceEEEEEEecCCCc
Q psy7039 449 KPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATGV 496 (516)
Q Consensus 449 ~p~~P~~~l~~~~~~~~~~~l~W~~p~~~~~~~i~~Y~v~~~~~~~~~ 496 (516)
+|++| .++.+..++.++++|+|++|..+++.+|.+|.|+|+..+...
T Consensus 1 PP~~P-~~~~v~~~~~~sv~l~W~pP~~~~~~~i~~Y~V~~~~~~~~~ 47 (98)
T d1x5ya1 1 PTSAP-QHLTVEDVTDTTTTLKWRPPDRIGAGGIDGYLVEYCLEGSEE 47 (98)
T ss_dssp CCCCC-EEEEEEEECSSEEEEEEECCSCCCSSCCCEEEEEEEETTCCC
T ss_pred CCCCC-cCcEEEEccCCEEEEEEECCCcCCCCCceEEEEEEEecCcce
Confidence 46777 788999999999999999998888889999999999987665
|
| >d2crma1 b.1.2.1 (A:8-114) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.27 E-value=1.1e-06 Score=67.55 Aligned_cols=94 Identities=18% Similarity=0.246 Sum_probs=65.3
Q ss_pred cCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeeecCCceEEEECCee
Q psy7039 316 SKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDE 395 (516)
Q Consensus 316 ~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~ 395 (516)
..|.+|..++.+..++.+++.|+|.+|.+++|.++.+|. +.|...+.
T Consensus 9 ~~P~~P~~~~~~~~~~~~sv~l~W~~P~~~~g~~~~~y~--------------------------------v~~~~~~~- 55 (107)
T d2crma1 9 DKPGIPVKPSVKGKIHSHSFKITWDPPKDNGGATINKYV--------------------------------VEMAEGSN- 55 (107)
T ss_dssp CCCCCCCCCEEEEEEETTEEEEECCCCTTCCSSCCCEEE--------------------------------EEEEESSS-
T ss_pred CCCcCCCCCEEEeeecCCEEEEEEEECccCCcceEEEEE--------------------------------EEEEeecC-
Confidence 456666666666778899999999999998888888772 11111111
Q ss_pred cCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEEEE
Q psy7039 396 VSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYV 446 (516)
Q Consensus 396 l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~v 446 (516)
..............+.|.+|.+ ...|.|++.|.|..|.+..+..+.+
T Consensus 56 ---~~~~~~~~~~~~~~~~i~~L~p-~t~Y~~rV~A~n~~G~s~~S~~v~v 102 (107)
T d2crma1 56 ---GNKWEMIYSGATREHLCDRLNP-GCFYRLRVYCISDGGQSAVSESLLV 102 (107)
T ss_dssp ---SCCCEEEECSSCSEEEECSCCT-TSCEEEEEEEEETTEECCCCCCCCC
T ss_pred ---CCcEEEeecCCccEEEEeccCC-CCEEEEEEEEECCCcCcCCCCcEEE
Confidence 1122223334445789999999 9999999999999997665544443
|
| >d1wf5a1 b.1.2.1 (A:8-115) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Sidekick 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.25 E-value=3.4e-07 Score=70.69 Aligned_cols=96 Identities=21% Similarity=0.273 Sum_probs=63.0
Q ss_pred EEEEEecCCCCCCCC-ceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeeecCCceE
Q psy7039 310 IEVVVVSKPGPPTGP-IDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPI 388 (516)
Q Consensus 310 ~~l~v~~~p~~p~~p-~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~ 388 (516)
+.|.|...|.+|..| +.+..++.+++.|+|.+|.+ +|.+|.+|. |.
T Consensus 3 ~~l~v~~~P~~P~~p~~~~~~~~~~sv~l~W~~P~~-~~~~I~~Y~--------------------------------v~ 49 (108)
T d1wf5a1 3 AHLRVRQLPHAPEHPVATLSTVERRAINLTWTKPFD-GNSPLIRYI--------------------------------LE 49 (108)
T ss_dssp CCSSCCCCCCCCSSCEEEECSSSTTEEEEECCCCCC-CSSCEEEEE--------------------------------EE
T ss_pred cccEEecCCCCCCCCEEEEEeccCCEEEEEEECCCC-CCCccEEEE--------------------------------EE
Confidence 456677888888776 44556788999999999854 667898883 11
Q ss_pred EEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEEE
Q psy7039 389 WTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASC 442 (516)
Q Consensus 389 W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~ 442 (516)
+...+... .............+.|.+|.+ ...|.|++.|.|..|.+..+.
T Consensus 50 ~~~~~~~~---~~~~~~~~~~~~~~~i~~L~p-~t~Y~frV~A~N~~G~s~~S~ 99 (108)
T d1wf5a1 50 MSENNAPW---TVLLASVDPKATSVTVKGLVP-ARSYQFRLCAVNDVGKGQFSK 99 (108)
T ss_dssp EECTTCCC---EEEESSCCTTCCEEEEESCCT-TCEEEEEEEEEESSCEEEECC
T ss_pred EEeccCCc---eEEeeeecCCccEEEECCCCC-CCEEEEEEEEEcCCcCCCCcC
Confidence 11111000 000000112335688999999 999999999999999865543
|
| >d1wfua_ b.1.2.1 (A:) Fibronectin type 3 and ankyrin repeat domains 1 protein, FANK1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin type 3 and ankyrin repeat domains 1 protein, FANK1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.20 E-value=2.3e-06 Score=67.18 Aligned_cols=92 Identities=10% Similarity=0.022 Sum_probs=62.7
Q ss_pred ceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEE
Q psy7039 325 IDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKF 404 (516)
Q Consensus 325 ~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~ 404 (516)
+.+..++.++|.|+|++|.++++..|.+|.. .+...... .....+..
T Consensus 22 p~v~~vt~~sv~l~W~~P~~~~g~~i~~y~i--------------------------------~y~~~~~~-~~~~~~~~ 68 (120)
T d1wfua_ 22 PVVGKVTHHSIELYWDLEQKEKRQGPQEQWL--------------------------------RFSIEEED-PKMHSYGV 68 (120)
T ss_dssp CBCCCEETTEEEEECTTTSCSCCCSCGGGCC--------------------------------EEEEEEEC-TTTCCEEE
T ss_pred CEEeEecCCEEEEEEECCcccCcccccceee--------------------------------eeeeeccc-ccccceee
Confidence 5677889999999999999998888888730 11100000 00111222
Q ss_pred EEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEEEEecCC
Q psy7039 405 ETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKP 450 (516)
Q Consensus 405 ~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~v~~~p 450 (516)
........++|.+|.+ ...|.|+++|.|..|.+..+-.+.+.+..
T Consensus 69 ~~~~~~~~~~v~~L~p-~t~Y~frV~A~n~~G~s~~S~~~~~~T~~ 113 (120)
T d1wfua_ 69 IYTGYATRHVVEGLEP-RTLYKFRLKVTSPSGEYEYSPVVSVATTR 113 (120)
T ss_dssp EEEESCSEEEEESCCT-TCEEEEEEEEECSSSCEEECCCEEEECCC
T ss_pred eccccccEEeCCCCCC-CcEeeEEEEEEeCCcEeCCCCCEEEEeCC
Confidence 2223335689999999 99999999999999997777666666543
|
| >d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Myelin oligodendrocyte glycoprotein (MOG) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.17 E-value=1e-05 Score=63.88 Aligned_cols=86 Identities=19% Similarity=0.240 Sum_probs=61.8
Q ss_pred ccEEEEcCCeEEEEEEEeeecC---CceEEEECCeec-----------C------CCCceEEEE---cCCeEEEEEcCce
Q psy7039 363 RDMTVLAGEEFTITVPFSGRPK---PTPIWTVNGDEV-----------S------PDGRIKFET---SENQTIYRNKSAK 419 (516)
Q Consensus 363 ~~~~v~~g~~~~l~C~~~g~p~---~~i~W~~~~~~l-----------~------~~~~~~~~~---~~~~~~l~i~~~~ 419 (516)
..+.+..|++++|.|.+..... ..+.|++.+... . ...+..+.. ..+..+|.|.++.
T Consensus 10 ~~V~~~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v~ 89 (126)
T d1pkoa_ 10 HPIRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKESIGEGKVALRIQNVR 89 (126)
T ss_dssp SCEEEETTSCEEEEEEEESCCCCTTSEEEEEEC--CCEEEEEETTEECGGGSCSTTTTSEEEECTTGGGTEEEEEESSCC
T ss_pred CCEEEEcCCcEEEEEEEECcCCCCceEEEEeecCCcceEEEEEeccccccccccccceeEEEeeccccCCeEEEEEEEEc
Confidence 3478899999999999864332 358998864210 0 012223322 2345789999999
Q ss_pred ecCCceEEEEEEEcCCCceeEEEEEEEecC
Q psy7039 420 RATDSGSYTIQLVNTVGSDSASCKVYVVDK 449 (516)
Q Consensus 420 ~~~~~g~y~c~a~n~~G~~s~s~~l~v~~~ 449 (516)
. .|+|.|+|.+.+..|..+..+.|.|..+
T Consensus 90 ~-~D~G~Y~C~v~~~~~~~~~~v~L~V~~P 118 (126)
T d1pkoa_ 90 F-SDEGGYTCFFRDHSYQEEAAVELKVEDP 118 (126)
T ss_dssp G-GGCEEEEEEEEETTEEEEEEEEEEEECT
T ss_pred h-hHCeEEEEEEEECCCEEEEEEEEEEeCC
Confidence 9 9999999999999888888889999764
|
| >d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Myelin oligodendrocyte glycoprotein (MOG) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.15 E-value=6.8e-06 Score=64.97 Aligned_cols=95 Identities=16% Similarity=0.172 Sum_probs=52.9
Q ss_pred ccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeecc------CCceEEee---
Q psy7039 121 LNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQI------GGRADVQT--- 191 (516)
Q Consensus 121 ~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~------~~~~~~~~--- 191 (516)
...+.+..|+++.|.|.+. +........+.|++.+....... +.++..... ..|..+..
T Consensus 9 ~~~V~~~~G~~v~L~C~~~-----------~~~~~~~~~v~W~~~~~~~~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~ 76 (126)
T d1pkoa_ 9 GHPIRALVGDEAELPCRIS-----------PGKNATGMEVGWYRSPFSRVVHL-YRNGKDQDAEQAPEYRGRTELLKESI 76 (126)
T ss_dssp SSCEEEETTSCEEEEEEEE-----------SCCCCTTSEEEEEEC--CCEEEE-EETTEECGGGSCSTTTTSEEEECTTG
T ss_pred CCCEEEEcCCcEEEEEEEE-----------CcCCCCceEEEEeecCCcceEEE-EEeccccccccccccceeEEEeeccc
Confidence 3448889999999999886 00111122233433222111111 111111111 12333322
Q ss_pred cCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEE
Q psy7039 192 TKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAH 227 (516)
Q Consensus 192 ~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~ 227 (516)
.....+|.|.+++.+|+|.|.|.+.+..+.....+.
T Consensus 77 ~~~~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~v~ 112 (126)
T d1pkoa_ 77 GEGKVALRIQNVRFSDEGGYTCFFRDHSYQEEAAVE 112 (126)
T ss_dssp GGTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEE
T ss_pred cCCeEEEEEEEEchhHCeEEEEEEEECCCEEEEEEE
Confidence 234679999999999999999999987766554443
|
| >d1x5fa1 b.1.2.1 (A:8-114) Neogenin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Neogenin species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.14 E-value=4.6e-06 Score=63.94 Aligned_cols=90 Identities=14% Similarity=0.214 Sum_probs=63.9
Q ss_pred ceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEE
Q psy7039 325 IDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKF 404 (516)
Q Consensus 325 ~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~ 404 (516)
+.+..++.+++.|+|.+|..+++.+|.+|. +.+...+. .......
T Consensus 17 l~~~~~~~~sv~lsW~~P~~~~~~~i~~Y~--------------------------------v~~~~~~~---~~~~~~~ 61 (107)
T d1x5fa1 17 VVASLVSTRFIKLTWRTPASDPHGDNLTYS--------------------------------VFYTKEGI---ARERVEN 61 (107)
T ss_dssp EEEEEECSSCEEEEEECCSSCSSCCSSEEE--------------------------------EEEEETTC---CCCEEEE
T ss_pred cEEEEecCCEEEEEEECCccCCCCceEEEE--------------------------------EEEEeCCC---CceEEEE
Confidence 788889999999999999877777777762 11211111 0111111
Q ss_pred EEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEEEEecCC
Q psy7039 405 ETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKP 450 (516)
Q Consensus 405 ~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~v~~~p 450 (516)
........+.|.+|.+ ...|.|++.|.|..|.+..+..+.+.+.|
T Consensus 62 ~~~~~~~~~~~~~L~p-~t~Y~~rV~A~n~~G~g~~S~~i~v~T~~ 106 (107)
T d1x5fa1 62 TSHPGEMQVTIQNLMP-ATVYIFRVMAQNKHGSGESSAPLRVETQP 106 (107)
T ss_dssp CSSTTCSEEEECSCCT-TCEEEEEEEEECSSCEEEECCCEEEECCC
T ss_pred EeCCCccEEEecCCCC-CCEEEEEEEEEeCCCCcCCCCCEEEECCC
Confidence 2223445799999999 99999999999999988777778887665
|
| >d2haza1 b.1.2.1 (A:489-589) Neural cell adhesion molecule 1, NCAM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Neural cell adhesion molecule 1, NCAM species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.14 E-value=8.9e-07 Score=67.30 Aligned_cols=93 Identities=18% Similarity=0.234 Sum_probs=59.7
Q ss_pred ceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEE
Q psy7039 325 IDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKF 404 (516)
Q Consensus 325 ~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~ 404 (516)
+.......+++.|.|.+|..++|.+|.+|. +.|...+...........
T Consensus 8 ~~~~~~~~~sv~l~W~~P~~~gg~~I~~Y~--------------------------------v~~~~~~~~~~~~~~~~~ 55 (101)
T d2haza1 8 IDQVEPYSSTAQVQFDEPEATGGVPILKYK--------------------------------AEWRAVGEEVWHSKWYDA 55 (101)
T ss_dssp EEEEEECSSCEEEEEECCSCCTTSCCCEEE--------------------------------EEEEETTCCCCEEEEEEH
T ss_pred cCEEEeeCCEEEEEEeCCCcCccccEEEEE--------------------------------EEEeecCCcceeeeeeee
Confidence 334456778999999999999999999983 222222110000000000
Q ss_pred EEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEEEEecCC
Q psy7039 405 ETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKP 450 (516)
Q Consensus 405 ~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~v~~~p 450 (516)
........++|.+|.+ ...|.|++.|.|..|.+..+..+.+.+.|
T Consensus 56 ~~~~~~~~~~i~~L~p-~t~Y~frV~A~N~~G~g~~S~~~~~~T~P 100 (101)
T d2haza1 56 KEASMEGIVTIVGLKP-ETTYAVRLAALNGKGLGEISAASEFKTQP 100 (101)
T ss_dssp HHHHHHSEEEECSCCT-TCEEEEEEEEEETTEECCCCCCEEEECCC
T ss_pred ecccceeEEEecCCCC-CeEEEEEEEEEeCCcCcCCCCceeEEeCC
Confidence 0011123588999999 99999999999999987766666666544
|
| >d2djsa1 b.1.2.1 (A:8-102) Ephrin type-B receptor 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Ephrin type-B receptor 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.12 E-value=7.6e-06 Score=61.02 Aligned_cols=88 Identities=13% Similarity=0.089 Sum_probs=62.4
Q ss_pred ceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEE
Q psy7039 325 IDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKF 404 (516)
Q Consensus 325 ~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~ 404 (516)
+.+...+.++|.|+|.+|.+.+| +|.+|. +.|...+... .....
T Consensus 7 l~~~~~t~~si~l~W~~p~~~~g-~i~~Y~--------------------------------v~~~~~~~~~--~~~~~- 50 (95)
T d2djsa1 7 MHQVSATMRSITLSWPQPEQPNG-IILDYE--------------------------------IRYYEKEHNE--FNSSM- 50 (95)
T ss_dssp CEEEEECSSEEEEECCCCSCCSS-CEEEEE--------------------------------EEEEETTSCS--TTCEE-
T ss_pred cEEEeecCCEEEEEEEECCCCCc-ceEEee--------------------------------eeeeeeccCc--ceeEe-
Confidence 88889999999999999987776 577762 2333322111 11111
Q ss_pred EEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEEEEecCC
Q psy7039 405 ETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKP 450 (516)
Q Consensus 405 ~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~v~~~p 450 (516)
.......+.|.+|.+ ...|.|++.|.|..|.+..+..+.+.+.|
T Consensus 51 -~~~~~~~~~i~~L~p-~t~Y~~~V~A~n~~G~g~~S~~~~~~T~~ 94 (95)
T d2djsa1 51 -ARSQTNTARIDGLRP-GMVYVVQVRARTVAGYGKFSGKMCFQTLT 94 (95)
T ss_dssp -EEESSSEEEEESCCT-TCEEEEEEEEEESSCEEEECCCEEEECCC
T ss_pred -ecCCccEEEEeecCC-ccEEEEEEEEEcCCCCCCCCCCEEEEeCC
Confidence 122334688999999 99999999999999998777777776654
|
| >d1wfoa1 b.1.2.1 (A:8-124) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Sidekick 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.11 E-value=2.2e-05 Score=61.05 Aligned_cols=88 Identities=18% Similarity=0.211 Sum_probs=62.6
Q ss_pred ceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEE
Q psy7039 325 IDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKF 404 (516)
Q Consensus 325 ~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~ 404 (516)
+.+..++.+++.|+|.+|..++| +|.+|. |.|...+... ......
T Consensus 27 ~~~~~~~~~sv~v~W~~P~~~~g-~i~~Y~--------------------------------i~y~~~~~~~--~~~~~~ 71 (117)
T d1wfoa1 27 ILFPEVRTTSVRLIWQPPAAPNG-IILAYQ--------------------------------ITHRLNTTTA--NTATVE 71 (117)
T ss_dssp CEEEEECSSEEEEECCCCSCCCS-CCCEEE--------------------------------EEEEESSCCC--SCCCEE
T ss_pred cEEEEecCCEEEEEEECCCCCCC-ceEEEe--------------------------------eeeeeccCCC--ceEeEE
Confidence 78888899999999999988776 677772 2333332211 111112
Q ss_pred EEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEEEEec
Q psy7039 405 ETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVD 448 (516)
Q Consensus 405 ~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~v~~ 448 (516)
........+.|.+|.+ ...|.|++.|.|..|.+..+..+.+++
T Consensus 72 ~~~~~~~~~~i~~L~p-~t~Y~~~V~A~n~~G~g~~S~~~~~tT 114 (117)
T d1wfoa1 72 VLAPSARQYTATGLKP-ESVYLFRITAQTRKGWGEAAEALVVTT 114 (117)
T ss_dssp EECTTCCEEEEESCCS-SSEEEEEEEEECSSCEEEEEEEEEECC
T ss_pred ecCCceEEEEECCCCC-CCEEEEEEEEECCCcCCCCcCCEEEEC
Confidence 2334456789999999 999999999999999877776666553
|
| >d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD2, first domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.11 E-value=5.3e-06 Score=62.32 Aligned_cols=75 Identities=19% Similarity=0.352 Sum_probs=52.8
Q ss_pred ceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeecc----------CCceEEeec
Q psy7039 123 DVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQI----------GGRADVQTT 192 (516)
Q Consensus 123 ~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~----------~~~~~~~~~ 192 (516)
.+....|+++.|.|.... .......|.|++++..+.. ..+..+.
T Consensus 4 tV~G~~G~sV~L~~~~~~------------------------~~~~i~~I~W~~~~~~i~~~~~~~~~~~~~~~~~~~-- 57 (98)
T d1hnga1 4 TVWGALGHGINLNIPNFQ------------------------MTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEIL-- 57 (98)
T ss_dssp EEEEETTSCEEECCTTCC------------------------CCTTEEEEEEEETTEEEEEEETTSCCEESSTTEEEC--
T ss_pred EEEEecCCCEEEECCCCC------------------------CccchheeeeeccccceeEEccCCccccCCCeEEEC--
Confidence 356678999999996430 0233457999988766531 1222222
Q ss_pred CCeeEEEeccCCCCCCeeEEEEEEcCCCceEE
Q psy7039 193 KSETVLDIPFCSRSDTGHYSLTLENNLGTATA 224 (516)
Q Consensus 193 ~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~ 224 (516)
.+.+|.|.+++.+|+|.|+|.+.+..|....
T Consensus 58 -~ngSL~I~nl~~~DsG~Y~c~v~~~~g~~~~ 88 (98)
T d1hnga1 58 -ANGDLKIKNLTRDDSGTYNVTVYSTNGTRIL 88 (98)
T ss_dssp -TTSCEEESSCCGGGCEEEEEEEEETTCCEEE
T ss_pred -CCccEEEeCCCHHHCEEEEEEEEeCCCCEEE
Confidence 2357999999999999999999998887643
|
| >d1wfna1 b.1.2.1 (A:8-113) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Sidekick 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.11 E-value=1.5e-05 Score=60.74 Aligned_cols=83 Identities=16% Similarity=0.325 Sum_probs=58.7
Q ss_pred ceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEE
Q psy7039 325 IDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKF 404 (516)
Q Consensus 325 ~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~ 404 (516)
+.+..++.+++.|+|++|...+| .|.+|. |.|...+.. ......
T Consensus 17 l~~~~~~~~sv~l~W~~P~~~ng-~i~~Y~--------------------------------i~~~~~~~~---~~~~~~ 60 (106)
T d1wfna1 17 LSFSEILDTSLKVSWQEPGEKNG-ILTGYR--------------------------------ISWEEYNRT---NTRVTH 60 (106)
T ss_dssp CEEESCCSSEEEEECCCCTTCCS-CCCEEE--------------------------------EEEEESSCG---GGCCCE
T ss_pred cEEEEecCCEEEEEEECCCCCCC-cEEeEE--------------------------------EEEEECCCC---cceEEE
Confidence 88888999999999999988877 577772 233322211 011112
Q ss_pred EEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEE
Q psy7039 405 ETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKV 444 (516)
Q Consensus 405 ~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l 444 (516)
........+.|.+|.+ +..|.|++.|.|..|.+..+...
T Consensus 61 ~~~~~~~~~~i~~L~p-~t~Y~~~V~A~n~~G~g~~s~~~ 99 (106)
T d1wfna1 61 YLPNVTLEYRVTGLTA-LTTYTIEVAAMTSKGQGQVSAST 99 (106)
T ss_dssp EECSSCCEEEEESCCT-TCEEEEEEEEECSSCEEEEEEEE
T ss_pred ecCCCeeEEEEccCCC-CCEEEEEEEEECCCCCcCCcCCE
Confidence 2333445789999999 99999999999999987665443
|
| >d2vkwa2 b.1.2.1 (A:601-693) Neural cell adhesion molecule 1, NCAM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Neural cell adhesion molecule 1, NCAM species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.10 E-value=7.8e-06 Score=60.73 Aligned_cols=84 Identities=14% Similarity=0.062 Sum_probs=59.7
Q ss_pred ceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEE
Q psy7039 325 IDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKF 404 (516)
Q Consensus 325 ~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~ 404 (516)
+.+...+.+++.|+|.+|. +++.+|.+|. |.|...+... ....
T Consensus 7 ~~~~~~~~~sv~l~W~~p~-~~~~~I~~Y~--------------------------------i~~~~~~~~~----~~~~ 49 (93)
T d2vkwa2 7 EGQMGEDGNSIKVNLIKQD-DGGSPIRHYL--------------------------------VRYRALSSEW----KPEI 49 (93)
T ss_dssp EEEECTTSSCEEEEEECCC-CTTSCCCEEE--------------------------------EEEEETTSCC----CCCE
T ss_pred CEeEEcCCCEEEEEeeCCC-CCcCceEEEE--------------------------------EEeeecCcce----eeee
Confidence 6677789999999999985 6788898883 3333333211 1112
Q ss_pred EEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEEEEe
Q psy7039 405 ETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVV 447 (516)
Q Consensus 405 ~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~v~ 447 (516)
........+.|.+|.+ ...|.|++.|.|..|.+..+. +.++
T Consensus 50 ~~~~~~~~~~i~~L~p-~t~Y~~~V~A~N~~G~s~ps~-~~~~ 90 (93)
T d2vkwa2 50 RLPSGSDHVMLKSLDW-NAEYEVYVVAENQQGKSKAAH-FVFR 90 (93)
T ss_dssp EECTTCCEEEECSCCT-TCEEEEEEEEEETTEECCCEE-EEEE
T ss_pred eccCCceEEEEecccc-ceEEEEEEEEEcCCCCcCCEe-EEEE
Confidence 2334556799999999 999999999999999876653 4444
|
| >d1x4xa1 b.1.2.1 (A:8-100) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.07 E-value=6.6e-06 Score=61.13 Aligned_cols=86 Identities=20% Similarity=0.233 Sum_probs=60.1
Q ss_pred ceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEE
Q psy7039 325 IDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKF 404 (516)
Q Consensus 325 ~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~ 404 (516)
+.+..++.+++.|+|.+|.+++ .+|.+|. +.|...+. ....
T Consensus 7 ~~v~~~s~~si~l~W~~p~~~~-~~i~~Y~--------------------------------v~~~~~~~----~~~~-- 47 (93)
T d1x4xa1 7 PQVTCRSATCAQVNWEVPLSNG-TDVTEYR--------------------------------LEWGGVEG----SMQI-- 47 (93)
T ss_dssp CCCEEEETTEEEEECCCCSCSS-SCCCEEE--------------------------------EEEESSTT----SCCE--
T ss_pred CEEEEeCCCeEEEEEEecccCC-CeeEEEE--------------------------------EEEccCCC----cceE--
Confidence 6777889999999999988654 4677762 22222111 1111
Q ss_pred EEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEEEEecCC
Q psy7039 405 ETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKP 450 (516)
Q Consensus 405 ~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~v~~~p 450 (516)
........++|.+|.+ ...|.|+++|.|..|.+..+..+.+.++|
T Consensus 48 ~~~~~~~~~~i~~L~p-~t~Y~~~V~A~n~~G~s~~S~~~~~~Tpp 92 (93)
T d1x4xa1 48 CYCGPGLSYEIKGLSP-ATTYYCRVQALSVVGAGPFSEVVACVTPP 92 (93)
T ss_dssp EEEESCSEEEEESCCS-SCEEEEEEEEECSSCCCCBCCCEEEECCC
T ss_pred eecCCccEEEEcccce-eeEEEEEEEEEECCcCcCCCCcEEEEeCC
Confidence 1222344688999999 99999999999999987777667776654
|
| >d1uema_ b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: KIAA1568 protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.04 E-value=4e-06 Score=65.47 Aligned_cols=104 Identities=22% Similarity=0.340 Sum_probs=65.2
Q ss_pred EEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeeecCCceEEEE
Q psy7039 312 VVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTV 391 (516)
Q Consensus 312 l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~ 391 (516)
+.+...|.+|.. +.+..++.+++.|+|.+|. +++.+|.+|... ....+.. -.|..
T Consensus 10 ~~~~~~P~pP~~-~~v~~~~~~sv~l~W~p~~-~~~~~i~~Y~v~---------~~~~~~~--------------~~~~~ 64 (117)
T d1uema_ 10 YDLSDLPGPPSK-PQVTDVTKNSVTLSWQPGT-PGTLPASAYIIE---------AFSQSVS--------------NSWQT 64 (117)
T ss_dssp CCSCCSCBCCCC-CEEEEECSSCEEEECCCCB-CSSSCCCEEEEE---------EEETTTE--------------EEEEE
T ss_pred ceeCccCcCCCC-CEEEEccCCEEEEEEECCC-cCCCCeEEEEEE---------EeccCCc--------------eeeEE
Confidence 345566766655 7888899999999999774 466678887300 0001111 11211
Q ss_pred CCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEE-EEecCCCCC
Q psy7039 392 NGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKV-YVVDKPSPP 453 (516)
Q Consensus 392 ~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l-~v~~~p~~P 453 (516)
+........++|.+|.+ ...|.|++.|.|..|.+..+... .+++++.+|
T Consensus 65 ------------~~~~~~~~~~~v~~L~p-~t~Y~frV~A~N~~G~s~~S~~s~~v~t~~~~P 114 (117)
T d1uema_ 65 ------------VANHVKTTLYTVRGLRP-NTIYLFMVRAINPQGLSDPSPMSDPVRTQDSGP 114 (117)
T ss_dssp ------------EEEEECSSEEEECSCCT-TCEEEEEEEEEETTEEEEECCCCCCEECCCSSC
T ss_pred ------------eccccccccceECCCCC-CCEEEEEEEEEeCCcCCCCcCCCcCEEeCCCCc
Confidence 11111224688999999 99999999999999986554322 345555555
|
| >d2cuha1 b.1.2.1 (A:8-109) Tenascin-X {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Tenascin-X species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.98 E-value=2.3e-05 Score=59.16 Aligned_cols=95 Identities=17% Similarity=0.223 Sum_probs=65.0
Q ss_pred ceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEE
Q psy7039 325 IDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKF 404 (516)
Q Consensus 325 ~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~ 404 (516)
+.+..++.+++.|+|.+|.. .+.+|. +.|...+ +.....
T Consensus 7 l~~~~~t~~si~l~W~~p~~----~i~~Y~--------------------------------v~~~~~~-----~~~~~~ 45 (102)
T d2cuha1 7 LRALNLTEGFAVLHWKPPQN----PVDTYD--------------------------------IQVTAPG-----APPLQA 45 (102)
T ss_dssp EECCCCSSSCEEEEEECCSS----CCSEEE--------------------------------EEEECSS-----SCCEEE
T ss_pred cEEEEeCCCEEEEEEEeeec----cceeeE--------------------------------EEEEecc-----ccceee
Confidence 77888899999999998753 244441 2222111 111222
Q ss_pred EEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEEEEecCCCCCCCCccccccc
Q psy7039 405 ETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQGPLDVSDIT 463 (516)
Q Consensus 405 ~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~v~~~p~~P~~~l~~~~~~ 463 (516)
........+.|.+|.+ +..|.|++.|.|..|.+.. ..+.+.+.+.+| .++.+.+++
T Consensus 46 ~~~~~~~~~~l~~L~p-~t~Y~~~V~a~~~~~~s~~-~~~~~~T~~~~P-~~l~~~~vt 101 (102)
T d2cuha1 46 ETPGSAVDYPLHDLVL-HTNYTATVRGLRGPNLTSP-ASITFTTGLEAP-RDLEAKEVT 101 (102)
T ss_dssp EEETTCSEEEECSCCS-SSEEEEEEEEEETTEECCC-EEEEEESCCCCT-TTSSSCCCC
T ss_pred eeeeeeeeEEEccEEe-eEEEEEEEEEEeCCCCcCC-EEEEEECCCCCC-CCCEeecCC
Confidence 3334556799999999 9999999999998776543 345666777887 788887765
|
| >d1bpva_ b.1.2.1 (A:) Type I titin module {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Type I titin module species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.96 E-value=2.3e-05 Score=59.42 Aligned_cols=85 Identities=15% Similarity=0.166 Sum_probs=56.3
Q ss_pred CCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeeecCCceEEEECCeec
Q psy7039 317 KPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEV 396 (516)
Q Consensus 317 ~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l 396 (516)
+|.+|.. +.+..++.+++.|+|.+|.+++|.+|.+|.. .+...+. -.|....
T Consensus 2 Pp~pP~~-p~~~~~t~~sv~lsW~~P~~~~g~~i~~y~~--------------------~~~~~~~----~~~~~~~--- 53 (104)
T d1bpva_ 2 PIDPPGK-PVPLNITRHTVTLKWAKPEYTGGFKITSYIV--------------------EKRDLPN----GRWLKAN--- 53 (104)
T ss_dssp CCCCCCC-CEEEEEETTEEEEECCCCSCCTTCCCSCCEE--------------------EEEETTS----CCCEECC---
T ss_pred CCCCCCC-CEEEEecCCEEEEEEEeccccCcceEEEEEE--------------------Eeecccc----cceeEEE---
Confidence 3445544 6777889999999999999999998888730 0000000 0111100
Q ss_pred CCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCce
Q psy7039 397 SPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSD 438 (516)
Q Consensus 397 ~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~ 438 (516)
........+.|.+|.+ ...|.|++.|.|..|..
T Consensus 54 --------~~~~~~~~~~i~~L~p-~t~Y~frV~A~n~~G~~ 86 (104)
T d1bpva_ 54 --------FSNILENEFTVSGLTE-DAAYEFRVIAKNAAGAI 86 (104)
T ss_dssp --------CSCCCSSEEEECSCCS-SCCEEEEEEEECTTSCE
T ss_pred --------eeccceeEEEEcCCCC-CCEEEEEEEEEECCCCC
Confidence 0011224688999999 99999999999999963
|
| >d2dn7a1 b.1.2.1 (A:8-101) Receptor-type tyrosine-protein phosphatase F, PTPRF {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Receptor-type tyrosine-protein phosphatase F, PTPRF species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.95 E-value=5.5e-05 Score=55.97 Aligned_cols=81 Identities=11% Similarity=0.209 Sum_probs=57.0
Q ss_pred ceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEE
Q psy7039 325 IDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKF 404 (516)
Q Consensus 325 ~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~ 404 (516)
+.+...+.+++.|+|.+|.+.+| +|.+|. |.|...+. ......
T Consensus 6 ~~~~~~~~~sv~l~W~pP~~~~g-~i~~Y~--------------------------------i~~~~~~~----~~~~~~ 48 (94)
T d2dn7a1 6 MMISTTAMNTALLQWHPPKELPG-ELLGYR--------------------------------LQYCRADE----ARPNTI 48 (94)
T ss_dssp EEEEECSTTEEEEEEECCSSCSS-CCCEEE--------------------------------EEEEETTC----SSCEEE
T ss_pred EeEEEEeCCEEEEEEeCCCCCCC-ceEEEE--------------------------------EEEEEcCC----CCcEEE
Confidence 55667788999999999987766 677772 23333221 111223
Q ss_pred EEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEEEE
Q psy7039 405 ETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCK 443 (516)
Q Consensus 405 ~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~ 443 (516)
.......++.|.+|.+ ...|.|++.|.|..|.+..+..
T Consensus 49 ~~~~~~~~~~i~~L~p-~t~Y~~~V~A~n~~G~g~~s~~ 86 (94)
T d2dn7a1 49 DFGKDDQHFTVTGLHK-GTTYIFRLAAKNRAGLGEEFEK 86 (94)
T ss_dssp EEETTCCEEEEECCCT-TCEEEEEEEEEETTEEEEEEEE
T ss_pred EcCCCccEEEEEccCC-eeEEEEEEEEEcCCcCCCCccE
Confidence 3334456789999999 9999999999999998765543
|
| >d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD2, first domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.93 E-value=1.2e-05 Score=60.30 Aligned_cols=80 Identities=16% Similarity=0.284 Sum_probs=56.1
Q ss_pred cEEEEcCCeEEEEEEEee-ecC-CceEEEECCeecC----------CCCceEEEEcCCeEEEEEcCceecCCceEEEEEE
Q psy7039 364 DMTVLAGEEFTITVPFSG-RPK-PTPIWTVNGDEVS----------PDGRIKFETSENQTIYRNKSAKRATDSGSYTIQL 431 (516)
Q Consensus 364 ~~~v~~g~~~~l~C~~~g-~p~-~~i~W~~~~~~l~----------~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a 431 (516)
.+....|+++.|.|.... ... ..|.|.+++..+. ...++... . ..+|+|.++.. .|+|.|+|.+
T Consensus 4 tV~G~~G~sV~L~~~~~~~~~~i~~I~W~~~~~~i~~~~~~~~~~~~~~~~~~~--~-ngSL~I~nl~~-~DsG~Y~c~v 79 (98)
T d1hnga1 4 TVWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEIL--A-NGDLKIKNLTR-DDSGTYNVTV 79 (98)
T ss_dssp EEEEETTSCEEECCTTCCCCTTEEEEEEEETTEEEEEEETTSCCEESSTTEEEC--T-TSCEEESSCCG-GGCEEEEEEE
T ss_pred EEEEecCCCEEEECCCCCCccchheeeeeccccceeEEccCCccccCCCeEEEC--C-CccEEEeCCCH-HHCEEEEEEE
Confidence 356678999999996432 222 3799999876542 11222221 2 23699999999 9999999999
Q ss_pred EcCCCce--eEEEEEEEe
Q psy7039 432 VNTVGSD--SASCKVYVV 447 (516)
Q Consensus 432 ~n~~G~~--s~s~~l~v~ 447 (516)
.+..|.. ...+.|.|.
T Consensus 80 ~~~~g~~~~~~~~~L~V~ 97 (98)
T d1hnga1 80 YSTNGTRILNKALDLRIL 97 (98)
T ss_dssp EETTCCEEEEEEEEEEEE
T ss_pred EeCCCCEEEEEEEEEEEE
Confidence 9999986 556667664
|
| >d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car), domain 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Coxsackie virus and adenovirus receptor (Car), domain 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.92 E-value=3.4e-05 Score=60.42 Aligned_cols=96 Identities=11% Similarity=0.110 Sum_probs=55.4
Q ss_pred cccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcC--c--eeeEEeeCCeeecc-----CCceEEe
Q psy7039 120 TLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEP--F--LNHGWSINGQVCQI-----GGRADVQ 190 (516)
Q Consensus 120 ~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p--~--~~i~W~~~~~~~~~-----~~~~~~~ 190 (516)
+...+.+.+|+++.|.|.+. .+......+.+.|...... . ..+.+...+..... .+|..+.
T Consensus 10 p~~~v~~~~G~~v~L~C~~~----------~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~ 79 (124)
T d1eaja_ 10 PEEMIEKAKGETAYLPCKFT----------LSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDDYYPDLKGRVHFT 79 (124)
T ss_dssp SEEEEEEETTSCEEECCBEE----------CCTTCCSCEEEEEEEEETTSSCCSEEEEEEETTEEECTTSSTTTTTEEEC
T ss_pred cCceEEEECCCcEEEeEEEe----------cccCCCCcEEEEEEEeCCCCcceeEEEEEEeCCccccccCcccccceEEE
Confidence 33558889999999999987 0111223334555443211 1 11122222222211 1344443
Q ss_pred e---cCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEE
Q psy7039 191 T---TKSETVLDIPFCSRSDTGHYSLTLENNLGTATAS 225 (516)
Q Consensus 191 ~---~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~ 225 (516)
. .....+|.|.+++.+|+|.|.|.+.+..+.....
T Consensus 80 ~~~~~~~~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~ 117 (124)
T d1eaja_ 80 SNDLKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKK 117 (124)
T ss_dssp CSCGGGTBCCEEECSCCGGGCEEEEEEEEETTEEEEEE
T ss_pred ccCCCCCEEEEEEcccEEccCEEEEEEEEECCCeEEeE
Confidence 2 2234689999999999999999998876654443
|
| >d1x5aa1 b.1.2.1 (A:8-101) Ephrin type-A receptor 1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Ephrin type-A receptor 1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.89 E-value=3.4e-05 Score=57.24 Aligned_cols=85 Identities=5% Similarity=-0.038 Sum_probs=58.6
Q ss_pred CceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceE
Q psy7039 324 PIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIK 403 (516)
Q Consensus 324 p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~ 403 (516)
.|++...+.++|.|+|.+|....+..+.+|. +.+...+ ....
T Consensus 8 ~L~~~~~~~~si~vsW~~p~~~~~~~~i~Y~--------------------------------i~~~~~~------~~~~ 49 (94)
T d1x5aa1 8 SLKLVKKEPRQLELTWAGSRPRNPGGNLSYE--------------------------------LHVLNQD------EEWH 49 (94)
T ss_dssp CCCEEEEETTEEEEECCCCCSSCCSSCCEEE--------------------------------EEEECSS------CEEE
T ss_pred ceEEEEcCCCEEEEEEecccCCCCCcEEEEE--------------------------------EEEecCC------ceEE
Confidence 3889999999999999998766555555552 1111111 0011
Q ss_pred EEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEEEEecC
Q psy7039 404 FETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDK 449 (516)
Q Consensus 404 ~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~v~~~ 449 (516)
... ....++|.+|.+ +..|.|++.|.|..|.+..+..+.+.+.
T Consensus 50 ~~~--~~t~~~i~~L~p-~t~Y~~rV~A~n~~G~g~~S~~~~~~T~ 92 (94)
T d1x5aa1 50 QMV--LEPRVLLTKLQP-DTTYIVRVRTLTPLGPGPFSPDHEFRTS 92 (94)
T ss_dssp EEE--SSSEEEEESCCS-SCEEEEEEEEECSSSCCCCCCCEEEECC
T ss_pred Eee--ccCEEEECCCCC-CCEEEEEEEEEcCCcCcCCCCCEEEEeC
Confidence 111 124688999999 9999999999999998877766666654
|
| >d1x5la1 b.1.2.1 (A:8-105) Ephrin type-A receptor 8 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Ephrin type-A receptor 8 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.88 E-value=1.5e-05 Score=59.77 Aligned_cols=86 Identities=16% Similarity=0.132 Sum_probs=60.2
Q ss_pred ceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEE
Q psy7039 325 IDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKF 404 (516)
Q Consensus 325 ~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~ 404 (516)
+.+..++.+++.|+|.+|...+| .|.+| .|.|...+.... ....
T Consensus 10 ~~~~~~s~~si~v~W~~P~~~~g-~i~~Y--------------------------------~v~y~~~~~~~~--~~~~- 53 (98)
T d1x5la1 10 IRQERAGQTSVSLLWQEPEQPNG-IILEY--------------------------------EIKYYEKDKEMQ--SYST- 53 (98)
T ss_dssp EECSCBCSSCEEEEECCCSCCCS-CCCEE--------------------------------EEEEEESSSCCS--SCEE-
T ss_pred eEEEeccCCEEEEEEECCCCCCC-CEEEE--------------------------------EEEeecccccce--eeEE-
Confidence 88888999999999999987666 56666 234444332111 1111
Q ss_pred EEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEEEEec
Q psy7039 405 ETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVD 448 (516)
Q Consensus 405 ~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~v~~ 448 (516)
.......++|.+|.+ ...|.|+++|.|..|.+..+..+.+.+
T Consensus 54 -~~~~~~~~~i~~L~p-~t~Y~~~V~a~n~~G~g~~S~~v~~~T 95 (98)
T d1x5la1 54 -LKAVTTRATVSGLKP-GTRYVFQVRARTSAGCGRFSQAMEVET 95 (98)
T ss_dssp -EEESSSEEEECSCCT-TCEEEECEEEEETTEECCCCCCEEEEC
T ss_pred -ecCCceEEEECCCCC-CCEEEEEEEEEcCCCCcCCCCCEEEEc
Confidence 122335789999999 999999999999999876665555543
|
| >d1qg3a2 b.1.2.1 (A:1218-1320) Integrin beta-4 subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Integrin beta-4 subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.88 E-value=3.6e-05 Score=58.14 Aligned_cols=89 Identities=16% Similarity=0.315 Sum_probs=58.5
Q ss_pred CCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeeecCCceEEEECCeec-
Q psy7039 318 PGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEV- 396 (516)
Q Consensus 318 p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l- 396 (516)
|.+|.. +.+..++.+++.|+|.+|.+.+| ++.+|. |.|.......
T Consensus 3 P~~P~~-~~~~~~~~~sv~v~W~~P~~~~g-~i~~Y~--------------------------------i~~~~~~~~~~ 48 (103)
T d1qg3a2 3 PSEPGR-LAFNVVSSTVTQLSWAEPAETNG-EITAYE--------------------------------VCYGLVNDDNR 48 (103)
T ss_dssp CCCCCC-CEEEEEETTEEEEECCCCSCCSS-CCCEEE--------------------------------EEEEEBCTTSC
T ss_pred CccCCC-cEEEEecCCEEEEEEEECccCCC-CceEEE--------------------------------EEeeccccccc
Confidence 444444 88999999999999999988766 677762 1111111100
Q ss_pred CCC-CceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEE
Q psy7039 397 SPD-GRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSAS 441 (516)
Q Consensus 397 ~~~-~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s 441 (516)
... .............++|.+|.+ ...|.|+++|.|..|.+..+
T Consensus 49 ~~~~~~~~~~~~~~~~~~~i~~L~p-~t~Y~~~V~A~n~~G~g~~s 93 (103)
T d1qg3a2 49 PIGPMKKVLVDNPKNRMLLIENLRE-SQPYRYTVKARNGAGWGPER 93 (103)
T ss_dssp BCSCCEEEEECCTTCCEEEECCCCT-TCCEEEEEEEEETTEECCCE
T ss_pred cccceEEEEecCCCceEEEEeecCC-CCEEEEEEEEEcCCccCCCc
Confidence 001 111122233445789999999 99999999999999986544
|
| >d2ibga1 b.1.2.1 (A:573-667) Hedgehog receptor iHog {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Hedgehog receptor iHog species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=97.87 E-value=2.4e-05 Score=58.19 Aligned_cols=82 Identities=9% Similarity=0.110 Sum_probs=57.8
Q ss_pred CceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceE
Q psy7039 324 PIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIK 403 (516)
Q Consensus 324 p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~ 403 (516)
.+.+..++.+++.|+|++|...++..|.+|. |.|...+... .....
T Consensus 12 ~~~v~~~s~tsv~l~W~~P~~~~~~~i~gY~--------------------------------i~y~~~~~~~--~~~~~ 57 (95)
T d2ibga1 12 LLEIEEYSETAVVLHWSLASDADEHLITGYY--------------------------------AYYRPSSSAG--EYFKA 57 (95)
T ss_dssp ECCCBCCSSSCEEEEEECCTTCCGGGCCEEE--------------------------------EEEEETTCCS--CCEEE
T ss_pred CeEEEEeCCCEEEEEEEeeeeccCCcccccc--------------------------------eeEeeeeecc--eeeee
Confidence 3888889999999999988887777788872 2332222110 11111
Q ss_pred EEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeE
Q psy7039 404 FETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSA 440 (516)
Q Consensus 404 ~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~ 440 (516)
.........+.|.+|.+ ...|.|++.|.|..|.+..
T Consensus 58 ~~~~~~~~~~~i~~L~p-~t~Y~~~V~A~n~~G~s~~ 93 (95)
T d2ibga1 58 TIEGAHARSFKIAPLET-ATMYEFKLQSFSAASASEF 93 (95)
T ss_dssp EEECTTCCEEEECSCCT-TCEEEEEEEEECSSCBCCC
T ss_pred eccCCceeEEEEeeccC-CeEEEEEEEEEeCCccCCC
Confidence 22234456789999999 9999999999999997644
|
| >d1x5ga1 b.1.2.1 (A:8-110) Neogenin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Neogenin species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.86 E-value=1.2e-05 Score=60.95 Aligned_cols=61 Identities=26% Similarity=0.470 Sum_probs=46.5
Q ss_pred CCCCCCCCcccccccCCeEEEEeeCCCCCCCCCcceEEEEEEecCCCc-eeeeEEeeeeeeeeE
Q psy7039 449 KPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATGV-SDLFISKSEVKTGSL 511 (516)
Q Consensus 449 ~p~~P~~~l~~~~~~~~~~~l~W~~p~~~~~~~i~~Y~v~~~~~~~~~-~~~~~~~~~~~~~~l 511 (516)
.|.+| .++.+..++.+++.|+|++|. +.+++|.+|.|+|+..+... ....+....+...+|
T Consensus 10 vP~~P-~~l~v~~~s~~si~l~W~~P~-~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~i~~L 71 (103)
T d1x5ga1 10 LPGPA-PNLRAYAASPTSITVTWETPV-SGNGEIQNYKLYYMEKGTDKEQDVDVSSHSYTINGL 71 (103)
T ss_dssp CCCCC-SSCEEEEEETTEEEEECCCCS-CCSSCCSEEEEEEEETTCCCCCCEEECSSEEEECSC
T ss_pred CcccC-CCcEEEEccCCEEEEEEECCc-CCCccEEEEEEEEEeCCCceeEEEeccccEEecCCC
Confidence 46777 789999999999999999886 45678999999999887665 444444455555554
|
| >d2bnqd1 b.1.1.1 (D:2-114) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), alpha-chain [TaxId: 9606]
Probab=97.85 E-value=5.5e-05 Score=58.20 Aligned_cols=88 Identities=14% Similarity=0.189 Sum_probs=50.5
Q ss_pred CcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecC--cCceeeEEeeCCeeeccCCceEEe--ecCC
Q psy7039 119 STLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLS--EPFLNHGWSINGQVCQIGGRADVQ--TTKS 194 (516)
Q Consensus 119 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~p~~~i~W~~~~~~~~~~~~~~~~--~~~~ 194 (516)
..|..+.+.+|+.++|.|...+. ....+.|++.. .....+.+...........++... ....
T Consensus 5 Q~P~~v~v~~G~sv~L~C~~s~~--------------~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 70 (113)
T d2bnqd1 5 QIPAALSVPEGENLVLNCSFTDS--------------AIYNLQWFRQDPGKGLTSLLLIQSSQREQTSGRLNASLDKSSG 70 (113)
T ss_dssp CSSSEEEEETTCCEEEEEEESCC--------------CEEEEEEEEECTTSCEEEEEEEETTCCEEEETTEEEEEETTTT
T ss_pred eeCCEEEEcCCCCEEEEEEEecC--------------cccCCeEEEeccccccceeeeeccceecccccceeeeeccCCC
Confidence 45667889999999999998710 01123344321 111111111111111122333332 3455
Q ss_pred eeEEEeccCCCCCCeeEEEEEEcCCC
Q psy7039 195 ETVLDIPFCSRSDTGHYSLTLENNLG 220 (516)
Q Consensus 195 ~~~l~i~~~~~~d~g~Y~c~~~~~~g 220 (516)
...|.|.+++.+|+|.|.|.+....+
T Consensus 71 ~~~L~i~~~~~~Dsg~YyCa~~~~~~ 96 (113)
T d2bnqd1 71 RSTLYIAASQPGDSATYLCAVRPTSG 96 (113)
T ss_dssp EEEEEESSCCGGGCEEEEEEEEESSS
T ss_pred EEEeeeecCCCCCCcEEeEeEecCCC
Confidence 67999999999999999999875443
|
| >d1j1pl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=97.85 E-value=2.5e-05 Score=59.54 Aligned_cols=85 Identities=15% Similarity=0.155 Sum_probs=55.0
Q ss_pred CcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCc-CceeeEEeeCCeee-ccCCceEEeecCCee
Q psy7039 119 STLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSE-PFLNHGWSINGQVC-QIGGRADVQTTKSET 196 (516)
Q Consensus 119 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~i~W~~~~~~~-~~~~~~~~~~~~~~~ 196 (516)
..|..+.+.+|++++|.|...+ -....+-|++... ..+.+..+...... ....++.....+...
T Consensus 6 Q~p~~l~v~~G~~vtL~C~~~~--------------~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~fs~~~~~~~~ 71 (107)
T d1j1pl_ 6 QSPATLSVTPGNSVSLSCRASQ--------------SIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDF 71 (107)
T ss_dssp EECSEEEECTTCCEEEEEEESS--------------CCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEE
T ss_pred CcCCeEEECCCCCEEEEEEecC--------------CCCcceEEEEeCCCCccEEeeecccCCCceeCCcceecccCCEE
Confidence 4456788999999999998761 0122345554421 12223332222111 123677777777788
Q ss_pred EEEeccCCCCCCeeEEEEEEc
Q psy7039 197 VLDIPFCSRSDTGHYSLTLEN 217 (516)
Q Consensus 197 ~l~i~~~~~~d~g~Y~c~~~~ 217 (516)
.|.|.+++.+|+|.|.|...+
T Consensus 72 ~L~I~~~~~~Dsa~YyCa~~~ 92 (107)
T d1j1pl_ 72 TLSINSVETEDFGMYFCQQAN 92 (107)
T ss_dssp EEEESSCCGGGCEEEEEEECS
T ss_pred EEEEcccCcCCCEEEEEEcCC
Confidence 999999999999999997643
|
| >d1i8ka_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=97.85 E-value=2.3e-05 Score=59.55 Aligned_cols=85 Identities=12% Similarity=0.097 Sum_probs=52.7
Q ss_pred CcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecC-cCceeeEEeeCC-eeeccCCceEEeecCCee
Q psy7039 119 STLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLS-EPFLNHGWSING-QVCQIGGRADVQTTKSET 196 (516)
Q Consensus 119 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~p~~~i~W~~~~-~~~~~~~~~~~~~~~~~~ 196 (516)
..|..+.+.+|++++|.|...+ .....+-|++.. ...+.+.++... ..-....|+.....+...
T Consensus 6 QsP~slsv~~G~svtl~C~~s~--------------~~~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~rfs~~~~~~~~ 71 (106)
T d1i8ka_ 6 QSPASLSVATGEKVTIRCMTST--------------DIDDDMNWYQQKPGEPPKFLISEGNTLRPGVPSRFSSSGTGTDF 71 (106)
T ss_dssp EECSEEECCTTCCEEEEEEESS--------------CCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEE
T ss_pred eeCCEEEECCCCCEEEEEEeCC--------------CCCccEEEEeCCCCCceEEEEeccCccccCCCcceeEeCCCCee
Confidence 3456788999999999998761 011224455431 111222222111 111234567766667788
Q ss_pred EEEeccCCCCCCeeEEEEEEc
Q psy7039 197 VLDIPFCSRSDTGHYSLTLEN 217 (516)
Q Consensus 197 ~l~i~~~~~~d~g~Y~c~~~~ 217 (516)
.|.|.+++.+|+|.|.|....
T Consensus 72 ~L~I~~~~~~Dsa~YyCa~~~ 92 (106)
T d1i8ka_ 72 VFTIENTLSEDVGDYYCLQSF 92 (106)
T ss_dssp EEEESSCCGGGCEEEEEEECS
T ss_pred eecccCCccccCEEEeEecCc
Confidence 999999999999999997643
|
| >d1xeda_ b.1.1.1 (A:) Polymeric-immunoglobulin receptor, PIGR {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Polymeric-immunoglobulin receptor, PIGR species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.84 E-value=3.1e-05 Score=60.05 Aligned_cols=88 Identities=22% Similarity=0.222 Sum_probs=48.8
Q ss_pred CcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCc-eeeEEeeCCe-eeccCCceEEe--ecCC
Q psy7039 119 STLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPF-LNHGWSINGQ-VCQIGGRADVQ--TTKS 194 (516)
Q Consensus 119 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~i~W~~~~~-~~~~~~~~~~~--~~~~ 194 (516)
..|..+.+.+|++++|.|.... ........+-|++..... ..+..+.+.. ......++.+. ....
T Consensus 4 t~P~~V~~~~G~svtL~C~y~~-----------~~~~~~~~~~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 72 (116)
T d1xeda_ 4 FGPEEVNSVEGNSVSITCYYPP-----------TSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENG 72 (116)
T ss_dssp BCCSEEEEETTCCEEEEEECCC-----------CHHHHHSCEEEEEC-----CEEEEESSSCBCTTTTTTEEEEEETTTT
T ss_pred cCCCEEEEcCCCCEEEEEEECC-----------CCCccceeEEEEEcCCCCCcEEEEECcccccceecCCccEeeeCCCC
Confidence 4567789999999999998751 001112223343321111 1111111111 11112344333 3445
Q ss_pred eeEEEeccCCCCCCeeEEEEEEc
Q psy7039 195 ETVLDIPFCSRSDTGHYSLTLEN 217 (516)
Q Consensus 195 ~~~l~i~~~~~~d~g~Y~c~~~~ 217 (516)
..+|.|.+++.+|+|.|.|.+..
T Consensus 73 ~~sL~I~~l~~~DsG~Y~C~v~~ 95 (116)
T d1xeda_ 73 TFVVNIAQLSQDDSGRYKCGLGI 95 (116)
T ss_dssp EEEEEECSCCGGGCEEEEEEESC
T ss_pred EEEEEEhhhCcCCCEEEEEEEEc
Confidence 67999999999999999998854
|
| >d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car), domain 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Coxsackie virus and adenovirus receptor (Car), domain 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.84 E-value=2.4e-05 Score=61.40 Aligned_cols=84 Identities=15% Similarity=0.308 Sum_probs=58.6
Q ss_pred ccEEEEcCCeEEEEEEEeeecCC----ceEEEECCeecC---------------------CCCceEEEE---cCCeEEEE
Q psy7039 363 RDMTVLAGEEFTITVPFSGRPKP----TPIWTVNGDEVS---------------------PDGRIKFET---SENQTIYR 414 (516)
Q Consensus 363 ~~~~v~~g~~~~l~C~~~g~p~~----~i~W~~~~~~l~---------------------~~~~~~~~~---~~~~~~l~ 414 (516)
..+.+..|+++.|.|.+.+.+.. .+.|++...... ...+..+.. ..+..+|+
T Consensus 12 ~~v~~~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~ 91 (124)
T d1eaja_ 12 EMIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDDYYPDLKGRVHFTSNDLKSGDASIN 91 (124)
T ss_dssp EEEEEETTSCEEECCBEECCTTCCSCEEEEEEEEETTSSCCSEEEEEEETTEEECTTSSTTTTTEEECCSCGGGTBCCEE
T ss_pred ceEEEECCCcEEEeEEEecccCCCCcEEEEEEEeCCCCcceeEEEEEEeCCccccccCcccccceEEEccCCCCCEEEEE
Confidence 44678999999999998755432 588986321100 012333321 12345799
Q ss_pred EcCceecCCceEEEEEEEcCCCceeEEEEEEEe
Q psy7039 415 NKSAKRATDSGSYTIQLVNTVGSDSASCKVYVV 447 (516)
Q Consensus 415 i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~v~ 447 (516)
|.++.. .|.|.|.|.+.+..|.....+.|+|.
T Consensus 92 I~~v~~-~D~G~Y~C~v~~~~~~~~~~~~L~V~ 123 (124)
T d1eaja_ 92 VTNLQL-SDIGTYQCKVKKAPGVANKKIHLVVL 123 (124)
T ss_dssp ECSCCG-GGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred EcccEE-ccCEEEEEEEEECCCeEEeEEEEEEE
Confidence 999999 99999999999998887777777774
|
| >d2esvd1 b.1.1.1 (D:4-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), alpha-chain [TaxId: 9606]
Probab=97.83 E-value=4.7e-05 Score=58.30 Aligned_cols=84 Identities=10% Similarity=0.059 Sum_probs=49.1
Q ss_pred ccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCc-CceeeEEee-CCeeeccCCceEEeecCCeeEE
Q psy7039 121 LNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSE-PFLNHGWSI-NGQVCQIGGRADVQTTKSETVL 198 (516)
Q Consensus 121 ~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~i~W~~-~~~~~~~~~~~~~~~~~~~~~l 198 (516)
+..+.+.+|++++|.|...+ ......+-|++... ..+.+..+. .........++..........|
T Consensus 5 P~svsv~~G~~vtl~C~~s~-------------~~~~~~l~WYrq~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L 71 (110)
T d2esvd1 5 PPSMDCAEGRAANLPCNHST-------------ISGNEYVYWYRQIHSQGPQYIIHGLKNNETNEMASLIITEDRKSSTL 71 (110)
T ss_dssp CSEEEEETTSCEEEEEECTT-------------CCTTEEEEEEEECTTSCCEEEEEESSSCEECSSCEEEECTTCSEEEE
T ss_pred CCEEEECCCCCEEEEEEEcC-------------CCCCCeEEEEEECCCCccEEeeeeeceecccccceeeecccCCeeee
Confidence 45688999999999998761 01111133433210 111111111 1111122344445555667899
Q ss_pred EeccCCCCCCeeEEEEEEc
Q psy7039 199 DIPFCSRSDTGHYSLTLEN 217 (516)
Q Consensus 199 ~i~~~~~~d~g~Y~c~~~~ 217 (516)
.|.+++.+|+|.|.|.+..
T Consensus 72 ~I~~~~~~Dsa~YyCa~~~ 90 (110)
T d2esvd1 72 ILPHATLRDTAVYYCIVVR 90 (110)
T ss_dssp EESSCCGGGCEEEEEEEEE
T ss_pred hhcccccCCceEEEEEEeC
Confidence 9999999999999998754
|
| >d2nxyb1 b.1.1.1 (B:1001-1097) CD4 V-set domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD4 V-set domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.83 E-value=1.3e-05 Score=60.11 Aligned_cols=68 Identities=19% Similarity=0.230 Sum_probs=46.7
Q ss_pred eEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeee--cc------------CCceEE
Q psy7039 124 VKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVC--QI------------GGRADV 189 (516)
Q Consensus 124 ~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~--~~------------~~~~~~ 189 (516)
+...+|++++|.|... ......+.|++..... .. ..|+..
T Consensus 4 V~~~~G~svtL~C~~s--------------------------~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 57 (97)
T d2nxyb1 4 VLGKKGDTVELTCTAS--------------------------QKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADS 57 (97)
T ss_dssp EEEETTSCEEECCBCS--------------------------SSSCCCEEEEETTCCEEEEEETTEEEECSSTTGGGEEC
T ss_pred EEEEcCCcEEEEEEEe--------------------------cCCCceEEEEEeCCceeeeecceeeeecCceeccceEE
Confidence 5678999999999988 5556677787643211 10 122222
Q ss_pred ee---cCCeeEEEeccCCCCCCeeEEEEEEc
Q psy7039 190 QT---TKSETVLDIPFCSRSDTGHYSLTLEN 217 (516)
Q Consensus 190 ~~---~~~~~~l~i~~~~~~d~g~Y~c~~~~ 217 (516)
.. ...+.+|.|.+++.+|+|.|.|.+.+
T Consensus 58 ~~~~~~~~~~sL~I~~l~~~DsG~Y~C~v~~ 88 (97)
T d2nxyb1 58 RRSLWDQGNFPLIIKNLKIEDSDTYICEVED 88 (97)
T ss_dssp CGGGGGGTBCCEEECSCCGGGCEEEEEEETT
T ss_pred EeccCCCCEEEEEECCCChHHCEEEEEEEec
Confidence 21 22345799999999999999999865
|
| >d8faba1 b.1.1.1 (A:3-105) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain lambda variable domain, VL-lambda species: Human (Homo sapiens), cluster 5 [TaxId: 9606]
Probab=97.81 E-value=3.3e-05 Score=58.41 Aligned_cols=81 Identities=17% Similarity=0.167 Sum_probs=49.6
Q ss_pred cceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEee--C-CeeeccCCceEEeecCCeeEE
Q psy7039 122 NDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSI--N-GQVCQIGGRADVQTTKSETVL 198 (516)
Q Consensus 122 ~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~--~-~~~~~~~~~~~~~~~~~~~~l 198 (516)
..+.+.+|++++|.|...+ . ....+-|++.. |.....|.. . ...-....++..........|
T Consensus 6 ~sl~~~~G~svtl~C~~~~-------------~-~~~~~~WYrQ~-pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 70 (103)
T d8faba1 6 PSVSVSPGQTARITCSANA-------------L-PNQYAYWYQQK-PGRAPVMVIYKDTQRPSGIPQRFSSSTSGTTVTL 70 (103)
T ss_dssp SEEEECTTSCEEEEEECTT-------------G-GGSCCEEEEEC-TTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEE
T ss_pred CeEEECCCCCEEEEEEeCC-------------C-CCCCEEEEEcc-CCCceEEEeeeecccccccCCcEEECCCCCccCc
Confidence 4688999999999998771 0 11223444431 111111111 0 011112345666667777899
Q ss_pred EeccCCCCCCeeEEEEEEc
Q psy7039 199 DIPFCSRSDTGHYSLTLEN 217 (516)
Q Consensus 199 ~i~~~~~~d~g~Y~c~~~~ 217 (516)
.|.+++.+|+|.|.|.+..
T Consensus 71 ~I~~l~~~Dsa~YyCA~~~ 89 (103)
T d8faba1 71 TISGVQAEDEADYYCQAWD 89 (103)
T ss_dssp EETTCCGGGCEEEEEEEEE
T ss_pred eEcCcchhHCceEEeeecC
Confidence 9999999999999997653
|
| >d1ospl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=97.81 E-value=3.5e-05 Score=58.63 Aligned_cols=85 Identities=12% Similarity=0.020 Sum_probs=52.0
Q ss_pred CcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCc-CceeeEEeeCC-eeeccCCceEEeecCCee
Q psy7039 119 STLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSE-PFLNHGWSING-QVCQIGGRADVQTTKSET 196 (516)
Q Consensus 119 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~i~W~~~~-~~~~~~~~~~~~~~~~~~ 196 (516)
..|..+.+.+|++++|.|...+ .. ...+-|++... ..+.+.-+... ..-....++.....+...
T Consensus 6 QsP~~ltv~~G~svtl~C~~s~-------------~~-~~~~~WYrQ~~g~~~~~i~~~~~~~~~~~~~rfs~~~~~~~~ 71 (107)
T d1ospl1 6 QSSSSFSVSLGDRVTITCKASE-------------DI-YSRLAWYQQKPGNAPRLLISGATSLETWVPSRFSGSDSGKDY 71 (107)
T ss_dssp CCCSEEEECTTCCEEEEEEESS-------------CC-TTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEECSSSSE
T ss_pred eeCCEEEECCCCCEEEEEecCC-------------Cc-ccccEEEEcCCCccceeEEeeccccCCccccccceecCCCeE
Confidence 4466788999999999998771 00 11244444311 11111111110 111123577777677778
Q ss_pred EEEeccCCCCCCeeEEEEEEc
Q psy7039 197 VLDIPFCSRSDTGHYSLTLEN 217 (516)
Q Consensus 197 ~l~i~~~~~~d~g~Y~c~~~~ 217 (516)
.|.|.+++.+|+|.|.|.+..
T Consensus 72 ~L~I~~~~~~Dsa~YyCa~~~ 92 (107)
T d1ospl1 72 TLSITSLQTEDVATYFCQQYW 92 (107)
T ss_dssp EEEESSCCGGGCSEEEEEECS
T ss_pred EeEEcccccccCCcEEEeecc
Confidence 999999999999999997653
|
| >d1nezg_ b.1.1.1 (G:) CD8 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD8 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.80 E-value=2.8e-05 Score=60.78 Aligned_cols=88 Identities=11% Similarity=0.147 Sum_probs=49.7
Q ss_pred CccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecC--cCc--ee-eEEeeC-C--eeecc--
Q psy7039 114 PRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLS--EPF--LN-HGWSIN-G--QVCQI-- 183 (516)
Q Consensus 114 p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~p~--~~-i~W~~~-~--~~~~~-- 183 (516)
|.+. ..|..+.+.+|++++|.|...+ .....+-|++.. ... +. +.+... . .....
T Consensus 2 ~~~~-~~P~~~~~~~G~~vtL~C~~~~--------------~~~~~v~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~ 66 (122)
T d1nezg_ 2 PELR-IFPKKMDAELGQKVDLVCEVLG--------------SVSQGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKL 66 (122)
T ss_dssp CEEE-EESSCEEECTTCCEEEEEEEES--------------CCSSCEEEEEEESSCSSCCCEEEEEECSSSCCEEECTTT
T ss_pred CceE-EcCCEEEECCCCCEEEEEEEcC--------------ccCCCEEEEEECCCCCcCceEEEEeeeccccceeeccCC
Confidence 4454 5567788999999999999871 112234444321 110 11 111111 0 01111
Q ss_pred --CCceEE-eecCCeeEEEeccCCCCCCeeEEEEEE
Q psy7039 184 --GGRADV-QTTKSETVLDIPFCSRSDTGHYSLTLE 216 (516)
Q Consensus 184 --~~~~~~-~~~~~~~~l~i~~~~~~d~g~Y~c~~~ 216 (516)
..++.. ...+....|.|.+++.+|+|.|.|.+.
T Consensus 67 ~~~~~~s~~~~~~~~~~L~I~~~~~~Dsg~YyCa~~ 102 (122)
T d1nezg_ 67 NSSKLFSAMRDTNNKYVLTLNKFSKENEGYYFCSVI 102 (122)
T ss_dssp TGGGTEEEEEETTTEEEEEESSCCGGGCEEEEEEEE
T ss_pred CCCcEEEEECCCCCEeEEEEcccccCCCEEEEeeEe
Confidence 123332 234455689999999999999999864
|
| >d1x4za1 b.1.2.1 (A:8-115) Brother of CDO precursor (BOC) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Brother of CDO precursor (BOC) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.80 E-value=3.2e-05 Score=59.09 Aligned_cols=47 Identities=26% Similarity=0.452 Sum_probs=39.4
Q ss_pred cCCCCCCCCcccccccCCeEEEEeeCCCCCCCCCcceEEEEEEecCCCc
Q psy7039 448 DKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATGV 496 (516)
Q Consensus 448 ~~p~~P~~~l~~~~~~~~~~~l~W~~p~~~~~~~i~~Y~v~~~~~~~~~ 496 (516)
.+|.+| ..+.+..++.+++.|+|+|+ .+++++|.+|.|+|+..+...
T Consensus 9 ~pP~~P-~~~~v~~~~~~sv~l~W~p~-~~~g~~I~~Y~v~~~~~~~~~ 55 (108)
T d1x4za1 9 SPPEAP-DRPTISTASETSVYVTWIPR-GNGGFPIQSFRVEYKKLKKVG 55 (108)
T ss_dssp CCCCCC-CCCEEEECCSSEEEEECCCC-CCTTSCCCEEEEEEEESSSCC
T ss_pred CCCccC-CCCEEEEccCCEEEEEEECC-CCCCCccEEEEEEEEecCCCC
Confidence 357777 78888899999999999876 478889999999999876554
|
| >d1a0ql1 b.1.1.1 (L:2-108) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=97.80 E-value=5e-05 Score=57.60 Aligned_cols=72 Identities=15% Similarity=0.097 Sum_probs=54.7
Q ss_pred cccEEEEcCCeEEEEEEEeeecCCceEEEECC--ee------------cCCCCceEEEEcCCeEEEEEcCceecCCceEE
Q psy7039 362 IRDMTVLAGEEFTITVPFSGRPKPTPIWTVNG--DE------------VSPDGRIKFETSENQTIYRNKSAKRATDSGSY 427 (516)
Q Consensus 362 ~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~--~~------------l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y 427 (516)
+..+.+.+|+.++|.|.........+.|++.. .. -....++....++....|+|.++.+ +|++.|
T Consensus 7 P~~l~~~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~L~I~~~~~-~DsA~Y 85 (106)
T d1a0ql1 7 PSSLSASLGGKVTITCKASQDIKKYIGWYQHKPGKQPRLLIHYTSTLLPGIPSRFRGSGSGRDYSFSISNLEP-EDIATY 85 (106)
T ss_dssp CSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEECSCCG-GGCSEE
T ss_pred CCEEEECCCCCEEEEEEcCCCCCCCeEEEECCCCCcEEEEEEccccccCCCCcceEeecCCCEeeeEehhhcc-cCCEeE
Confidence 46678899999999998865555568998731 10 0123567777777788999999999 999999
Q ss_pred EEEEEcC
Q psy7039 428 TIQLVNT 434 (516)
Q Consensus 428 ~c~a~n~ 434 (516)
.|.+.+.
T Consensus 86 yCa~~~~ 92 (106)
T d1a0ql1 86 YCLQYYN 92 (106)
T ss_dssp EEEECSS
T ss_pred EEEEeCC
Confidence 9987654
|
| >d1x5za1 b.1.2.1 (A:8-109) Receptor-type tyrosine-protein phosphatase delta, PTPRD {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Receptor-type tyrosine-protein phosphatase delta, PTPRD species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.80 E-value=1.6e-05 Score=60.04 Aligned_cols=94 Identities=18% Similarity=0.328 Sum_probs=59.7
Q ss_pred EecCCCCCCCC--ceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeeecCCceEEEE
Q psy7039 314 VVSKPGPPTGP--IDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTV 391 (516)
Q Consensus 314 v~~~p~~p~~p--~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~ 391 (516)
+...+..|..| +.+..++.+++.|+|.+|.++ .|.+|. +.|..
T Consensus 4 v~T~~~vP~~P~~~~~~~~~~~si~l~W~~p~~~---~i~~Y~--------------------------------i~y~~ 48 (102)
T d1x5za1 4 VITQTGVPGQPLNFKAEPESETSILLSWTPPRSD---TIANYE--------------------------------LVYKD 48 (102)
T ss_dssp CCCCSCCCCCCEEEEEECSSSSEEEEEEECCSCC---CCCEEE--------------------------------ECBEE
T ss_pred EECCCCCCcCCCCeEEEEccCCEEEEEEECCCCC---CccceE--------------------------------EEEEe
Confidence 33444444444 777888999999999998642 355552 12221
Q ss_pred CCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEEEEec
Q psy7039 392 NGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVD 448 (516)
Q Consensus 392 ~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~v~~ 448 (516)
.+.. ....... ....++.|.+|.+ +..|.|++.|.|..|.+..+..+.+++
T Consensus 49 ~~~~----~~~~~~~-~~~~~~~i~~L~p-~t~Y~~~V~A~n~~G~g~~S~~v~~~T 99 (102)
T d1x5za1 49 GEHG----EEQRITI-EPGTSYRLQGLKP-NSLYYFRLAARSPQGLGASTAEISART 99 (102)
T ss_dssp SSSC----CCBCCEE-CSSSEEEEECCCT-TCEEEECEEEECSSCEEEECCCEEEEC
T ss_pred CCCC----ceEEEEc-CCcCEEEECCCCC-CCEEEEEEEEEcCCCEeCCCCCEEEEc
Confidence 1110 0000111 1224688999999 999999999999999877776666654
|
| >d1c5cl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=97.79 E-value=3.9e-05 Score=58.25 Aligned_cols=73 Identities=14% Similarity=0.077 Sum_probs=51.0
Q ss_pred CcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEee--CCee------------eccC
Q psy7039 119 STLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSI--NGQV------------CQIG 184 (516)
Q Consensus 119 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~--~~~~------------~~~~ 184 (516)
..|..+.+.+|++++|.|... ......+.|++ .+.. ....
T Consensus 6 Q~P~s~~~~~G~svtl~C~~s--------------------------~~~~~~~~Wyrq~~g~~~~~~~~~~~~~~~~~~ 59 (107)
T d1c5cl1 6 QSPSSLSASLGERVSLTCRTS--------------------------QEISGYLSWLQQKPDGTIKRLIYDATKLDSGAP 59 (107)
T ss_dssp EECSEEEECTTCCEEEEEEES--------------------------SCCTTCEEEEEECTTSCEEEEEETTTEECTTSC
T ss_pred ccCCEEEECCCCCEEEEEEeC--------------------------CCCCCCEEEEEcCCCCcceeEEeccccccCCCC
Confidence 345678899999999999877 33333455554 2211 1123
Q ss_pred CceEEeecCCeeEEEeccCCCCCCeeEEEEEEc
Q psy7039 185 GRADVQTTKSETVLDIPFCSRSDTGHYSLTLEN 217 (516)
Q Consensus 185 ~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~ 217 (516)
.++.....+....|.|.+++.+|+|.|.|.+..
T Consensus 60 ~~~~~~~~~~~~~L~I~~l~~~Dsa~YyCa~~~ 92 (107)
T d1c5cl1 60 KRFSGSRSGSDYSLTISSLESEDFADYYCLQYA 92 (107)
T ss_dssp TTEEEEEETTEEEEEESSCCGGGCSEEEEEECS
T ss_pred CceEecccCCEEEEEEhhhcccCCeEEEEecCc
Confidence 455555566678999999999999999997653
|
| >d1neua_ b.1.1.1 (A:) Myelin membrane adhesion molecule P0 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Myelin membrane adhesion molecule P0 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.78 E-value=7e-05 Score=58.17 Aligned_cols=91 Identities=15% Similarity=0.078 Sum_probs=53.8
Q ss_pred CcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcC---ceeeEEeeCCeeecc-----CCceEEe
Q psy7039 119 STLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEP---FLNHGWSINGQVCQI-----GGRADVQ 190 (516)
Q Consensus 119 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p---~~~i~W~~~~~~~~~-----~~~~~~~ 190 (516)
..+..+.+..|+++.|.|.+. .+........+.|.+.... ...+.+...+..... ..|+.+.
T Consensus 4 ~~p~~v~a~~G~~v~L~C~~~----------~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~ 73 (119)
T d1neua_ 4 YTDREVYGAVGSQVTLHCSFW----------SSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYIDEVGTFKERIQWV 73 (119)
T ss_dssp ECCSEEEEETTSCEEECCEEE----------CSSCCCSCCEEEEEEEETTCCCCEEEEEEETTEEEECSSSTTTTCEEEC
T ss_pred cCCCeEEEeeCCCEEEEEEEE----------ecCCCCccEEEEEEEecccCCceeEEEEEeecccccccCccceeEEEEE
Confidence 445668899999999999976 1112223345666543221 122333333332221 1344433
Q ss_pred e--cCCeeEEEeccCCCCCCeeEEEEEEcCC
Q psy7039 191 T--TKSETVLDIPFCSRSDTGHYSLTLENNL 219 (516)
Q Consensus 191 ~--~~~~~~l~i~~~~~~d~g~Y~c~~~~~~ 219 (516)
. .....+|.|.+++.+|+|.|.|.+.+..
T Consensus 74 ~~~~~~~~sL~I~~v~~~DsG~Y~C~v~~~~ 104 (119)
T d1neua_ 74 GDPSWKDGSIVIHNLDYSDNGTFTCDVKNPP 104 (119)
T ss_dssp CBGGGTBCCEEECSCCGGGCEEEEEEEEC--
T ss_pred EECCCCEEEEEECCCChHHCEEEEEEEEECC
Confidence 2 2345689999999999999999998643
|
| >d1x5ka1 b.1.2.1 (A:8-118) Neogenin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Neogenin species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.77 E-value=8.4e-05 Score=56.78 Aligned_cols=89 Identities=17% Similarity=0.238 Sum_probs=58.7
Q ss_pred ceee--eccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCce
Q psy7039 325 IDYT--TVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRI 402 (516)
Q Consensus 325 ~~~~--~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~ 402 (516)
+.+. ..+..++.|+|++|...+| +|.+|. +.|...+.. ......
T Consensus 18 ~~v~~~~~~~~sv~v~W~~P~~~~g-~i~~Y~--------------------------------i~~~~~~~~-~~~~~~ 63 (111)
T d1x5ka1 18 VTVVSKEGKPKTIIVNWQPPSEANG-KITGYI--------------------------------IYYSTDVNA-EIHDWV 63 (111)
T ss_dssp EEEEECSSCTTCEEEEEECCSCCSS-CCCEEE--------------------------------EEEESCSSS-CTTTSE
T ss_pred cEEEEecCCCCEEEEEEEccccCCC-ceeeeE--------------------------------EeeeecCCC-CcceeE
Confidence 4444 3577899999999987665 677762 222222211 111122
Q ss_pred EEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEEEEec
Q psy7039 403 KFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVD 448 (516)
Q Consensus 403 ~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~v~~ 448 (516)
..........++|.+|.+ +..|.|++.|.|..|.+..+..+.+++
T Consensus 64 ~~~~~~~~~~~~i~~L~p-~t~Y~~~V~A~n~~G~g~~S~~v~~~T 108 (111)
T d1x5ka1 64 IEPVVGNRLTHQIQELTL-DTPYYFKIQARNSKGMGPMSEAVQFRT 108 (111)
T ss_dssp EEEESTTCSEEEECSCCS-SSEEEEEEEEECSSCBCCCCCCEEEEC
T ss_pred EEEeCCCeeEEEECCCCC-CCEEEEEEEEEcCCCCcCCCCCEEEEC
Confidence 233445556799999999 999999999999999876665565554
|
| >d1a0ql1 b.1.1.1 (L:2-108) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=97.77 E-value=3.9e-05 Score=58.24 Aligned_cols=85 Identities=11% Similarity=0.048 Sum_probs=51.9
Q ss_pred CcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCc-CceeeEEeeCCeee-ccCCceEEeecCCee
Q psy7039 119 STLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSE-PFLNHGWSINGQVC-QIGGRADVQTTKSET 196 (516)
Q Consensus 119 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~i~W~~~~~~~-~~~~~~~~~~~~~~~ 196 (516)
..|..+.+.+|++++|.|...+ .. ...+-|++... ..+.+..+...... ....++.....+...
T Consensus 5 QsP~~l~~~~G~svtl~C~~s~-------------~~-~~~~~WYrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 70 (106)
T d1a0ql1 5 QSPSSLSASLGGKVTITCKASQ-------------DI-KKYIGWYQHKPGKQPRLLIHYTSTLLPGIPSRFRGSGSGRDY 70 (106)
T ss_dssp EECSEEEECTTCCEEEEEEESS-------------CC-TTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEE
T ss_pred CcCCEEEECCCCCEEEEEEcCC-------------CC-CCCeEEEECCCCCcEEEEEEccccccCCCCcceEeecCCCEe
Confidence 3466788999999999998761 00 11234444311 11111111111111 123567776677788
Q ss_pred EEEeccCCCCCCeeEEEEEEc
Q psy7039 197 VLDIPFCSRSDTGHYSLTLEN 217 (516)
Q Consensus 197 ~l~i~~~~~~d~g~Y~c~~~~ 217 (516)
+|.|.+++++|+|.|.|.+..
T Consensus 71 ~L~I~~~~~~DsA~YyCa~~~ 91 (106)
T d1a0ql1 71 SFSISNLEPEDIATYYCLQYY 91 (106)
T ss_dssp EEEECSCCGGGCSEEEEEECS
T ss_pred eeEehhhcccCCEeEEEEEeC
Confidence 999999999999999998643
|
| >d2ic2a1 b.1.2.1 (A:466-572) Hedgehog receptor iHog {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Hedgehog receptor iHog species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=97.77 E-value=1.5e-05 Score=60.81 Aligned_cols=91 Identities=16% Similarity=0.189 Sum_probs=51.4
Q ss_pred ceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEE
Q psy7039 325 IDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKF 404 (516)
Q Consensus 325 ~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~ 404 (516)
+.+..++.+++.|+|.+|. ++|.+|++|.... ...+..- .|...............
T Consensus 6 p~v~~~~~~sv~l~W~~P~-~~g~~I~~Y~ie~---------~~~~~~~--------------~~~~~~~~~~~~~~~~~ 61 (107)
T d2ic2a1 6 PNVTRLSDESVMLRWMVPR-NDGLPIVIFKVQY---------RMVGKRK--------------NWQTTNDNIPYGKPKWN 61 (107)
T ss_dssp CEEEECC---EEEEEEEEC-CSSCCEEEEEEEE---------EECC-----------------CCEEEEEEEECCSCSCS
T ss_pred CEEEEEECCEEEEEEEeCc-cccCCceEEEEEE---------EeccCCC--------------cceEEEeeeeccceeee
Confidence 4688889999999999996 5678899983110 0111111 11110000000000000
Q ss_pred EEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeE
Q psy7039 405 ETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSA 440 (516)
Q Consensus 405 ~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~ 440 (516)
........++|.+|.+ ...|.|++.|.|..|.+..
T Consensus 62 ~~~~~~~~~~i~~L~p-~t~Y~frV~A~N~~G~s~~ 96 (107)
T d2ic2a1 62 SELGKSFTASVTDLKP-QHTYRFRILAVYSNNDNKE 96 (107)
T ss_dssp SSSEEEEEEEECSCCS-SEEEEEEEEEEETTSCEEE
T ss_pred ecccceeEEEECCCcC-CcEEEEEEEEEcCCCCCCC
Confidence 0112235789999999 9999999999999998654
|
| >d1x3da1 b.1.2.1 (A:8-112) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.76 E-value=3.4e-05 Score=58.60 Aligned_cols=93 Identities=18% Similarity=0.281 Sum_probs=61.1
Q ss_pred CCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeeecCCceEEEECCeec
Q psy7039 317 KPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEV 396 (516)
Q Consensus 317 ~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l 396 (516)
+|.+|.. +.+...+.+++.|+|.+|.+ ++.+|.+|. +.|.....
T Consensus 10 ~P~~P~~-~~~~~~~~~sv~l~W~pp~~-~~~~i~~Y~--------------------------------i~~~~~~~-- 53 (105)
T d1x3da1 10 EPDIPNP-PRIANRTKNSLTLQWKAPSD-NGSKIQNFV--------------------------------LEWDEGKG-- 53 (105)
T ss_dssp CCCCCCC-CEEEEEETTEEEEECCCCCC-CSSCEEEEE--------------------------------EEECTTTS--
T ss_pred CCcCCCC-CEEEEccCCEEEEEEECCCC-CcCccEEEE--------------------------------EEEecCCC--
Confidence 3433333 78888999999999999865 456787772 11111110
Q ss_pred CCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEEEEec
Q psy7039 397 SPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVD 448 (516)
Q Consensus 397 ~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~v~~ 448 (516)
..............+.+.++.+ ...|.|+++|.|..|.+..+..+.+.+
T Consensus 54 --~~~~~~~~~~~~~~~~~~~L~p-~t~Y~frV~A~N~~G~s~~S~~~~~~T 102 (105)
T d1x3da1 54 --NGEFCQCYMGSQKQFKITKLSP-AMGCKFRLSARNDYGTSGFSEEVLYYT 102 (105)
T ss_dssp --SSCCEEEEEESCSEEEEESCCT-TCEEEEECCEEESSCBCCCCCCEEEEC
T ss_pred --cceeEEEecCCccEEEecCCcC-CcEEEEEEEEECCCeEcCCCCcEEEEC
Confidence 1112222233445788999999 999999999999999876655555443
|
| >d1lk3l1 b.1.1.1 (L:1-106) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.76 E-value=4.5e-05 Score=57.93 Aligned_cols=82 Identities=12% Similarity=0.109 Sum_probs=50.4
Q ss_pred ccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCc-CceeeEEeeCCe-eeccCCceEEeecCCeeEE
Q psy7039 121 LNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSE-PFLNHGWSINGQ-VCQIGGRADVQTTKSETVL 198 (516)
Q Consensus 121 ~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~i~W~~~~~-~~~~~~~~~~~~~~~~~~l 198 (516)
+..+.+.+|++++|.|...+ .....+-|++... ..+....+.... .-....++.....+....|
T Consensus 7 p~s~~~~~G~svtL~C~~s~--------------~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~~~~~~~L 72 (106)
T d1lk3l1 7 PPALTVSPGEKLTISCKASE--------------SVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGSGTDFTL 72 (106)
T ss_dssp CSEEEECTTSCEEEEEEESS--------------CCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEE
T ss_pred CCeEEECCCCCEEEEEEeCC--------------CCCccEEEEecCCCCCcEEEEEecccccCCcCCceeeecCCCEEEe
Confidence 34688999999999998871 0112234444311 111111111111 1112356777767777899
Q ss_pred EeccCCCCCCeeEEEEEE
Q psy7039 199 DIPFCSRSDTGHYSLTLE 216 (516)
Q Consensus 199 ~i~~~~~~d~g~Y~c~~~ 216 (516)
.|.+++.+|+|.|.|...
T Consensus 73 ~I~~~~~~Dsa~YyCa~~ 90 (106)
T d1lk3l1 73 TIDPVEADDTAIYFCQQS 90 (106)
T ss_dssp EESSCCGGGCEEEEEEEC
T ss_pred EECCcChhhCCCcccccc
Confidence 999999999999999654
|
| >d1mexl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=97.74 E-value=5.3e-05 Score=57.57 Aligned_cols=84 Identities=12% Similarity=0.096 Sum_probs=50.9
Q ss_pred CcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCc--CceeeEEeeCCeeeccCCceEEeecCCee
Q psy7039 119 STLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSE--PFLNHGWSINGQVCQIGGRADVQTTKSET 196 (516)
Q Consensus 119 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--p~~~i~W~~~~~~~~~~~~~~~~~~~~~~ 196 (516)
..+..+.+.+|++++|.|.... .....+.|++... ....+........-....|+.........
T Consensus 6 Q~p~~l~~~~G~svtl~C~~s~--------------~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~rfs~~~~~~~~ 71 (107)
T d1mexl1 6 QSQKFMSTSLGNRVSVTCKASQ--------------NVGTNVAWFQQKPGQSPKTLIYSASYRYSGVPDRFTGSGSGTDF 71 (107)
T ss_dssp CCCSEEEECTTSCEEEEEEESS--------------CCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEE
T ss_pred cCCCeEEECCCCCEEEEEEeCC--------------CCCCceEEEeccCCcccEEEEEeccccccccCCCeeecCCCCee
Confidence 4556688999999999998761 0112234444211 11111111111111123567766667778
Q ss_pred EEEeccCCCCCCeeEEEEEE
Q psy7039 197 VLDIPFCSRSDTGHYSLTLE 216 (516)
Q Consensus 197 ~l~i~~~~~~d~g~Y~c~~~ 216 (516)
.|.|.+++++|++.|.|.+.
T Consensus 72 ~L~I~~~~~~DsA~YyCa~~ 91 (107)
T d1mexl1 72 TLTINNVQSEDLAEYFCQQY 91 (107)
T ss_dssp EEEESSCCGGGCSEEEEEEC
T ss_pred eeeechhheecceeEEEeEC
Confidence 99999999999999999754
|
| >d1hkfa_ b.1.1.1 (A:) NK cell activating receptor NKP44 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: NK cell activating receptor NKP44 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.74 E-value=6.8e-05 Score=57.16 Aligned_cols=86 Identities=15% Similarity=0.125 Sum_probs=48.4
Q ss_pred ccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCc--CceeeEEeeCCeeeccCCceEEe--ecCCee
Q psy7039 121 LNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSE--PFLNHGWSINGQVCQIGGRADVQ--TTKSET 196 (516)
Q Consensus 121 ~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--p~~~i~W~~~~~~~~~~~~~~~~--~~~~~~ 196 (516)
++.+.+.+|++++|.|.... ....+..+-|++... ....+.............|+.+. ......
T Consensus 3 ~~~v~~~~G~svtl~C~~~~------------~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~ 70 (108)
T d1hkfa_ 3 AQVLQSVAGQTLTVRCQYPP------------TGSLYEKKGWCKEASALVCIRLVTSSKPRTMAWTSRFTIWDDPDAGFF 70 (108)
T ss_dssp CEEEEECTTCCEEEEEECCC------------CTTCCCEEEEEEEEETTEEEEEEEECSTTCCBCSTTEEEEEETTTTEE
T ss_pred CEEEEEcCCCCEEEEEEECC------------CCCCCCEEEEEEeCCCCCcEEeeeccCccccceeeeEeeeeeCCCCEE
Confidence 45578899999999998751 011111223443211 11111111111111122444443 345567
Q ss_pred EEEeccCCCCCCeeEEEEEEcC
Q psy7039 197 VLDIPFCSRSDTGHYSLTLENN 218 (516)
Q Consensus 197 ~l~i~~~~~~d~g~Y~c~~~~~ 218 (516)
+|.|.+++.+|+|.|.|.+...
T Consensus 71 ~L~I~~l~~~DsG~Y~C~v~~~ 92 (108)
T d1hkfa_ 71 TVTMTDLREEDSGHYWCRIYRP 92 (108)
T ss_dssp EEEECSCCGGGCEEEEEEEECT
T ss_pred EEEEhhhCCCCCEEEEEEEecC
Confidence 9999999999999999998753
|
| >d1op3k1 b.1.1.1 (K:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Engineered (including hybrid species)
Probab=97.72 E-value=6.2e-05 Score=57.05 Aligned_cols=85 Identities=9% Similarity=0.077 Sum_probs=52.4
Q ss_pred CcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCc-Ccee-eEEeeCCeeeccCCceEEeecCCee
Q psy7039 119 STLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSE-PFLN-HGWSINGQVCQIGGRADVQTTKSET 196 (516)
Q Consensus 119 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~-i~W~~~~~~~~~~~~~~~~~~~~~~ 196 (516)
..|..+.+.+|++++|.|...+ -....+-|++... ..+. +.+......-....++.....+...
T Consensus 5 Q~P~sl~~~~G~svtL~C~~~~--------------~~~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~f~~~~~~~~~ 70 (106)
T d1op3k1 5 QSPSTLSASVGDTITITCRASQ--------------SIETWLAWYQQKPGKAPKLLIYKASTLKTGVPSRFSGSGSGTEF 70 (106)
T ss_dssp EECSEEEECTTCEEEEEEEESS--------------CCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEE
T ss_pred CcCCeEEECCCCCEEEEEEeCC--------------CCCCcEEEEecCCCCCCEEEEEccccCCCCcCCceeeeccCCEE
Confidence 3466788999999999998771 0111234444311 1111 1111111111123577777677778
Q ss_pred EEEeccCCCCCCeeEEEEEEc
Q psy7039 197 VLDIPFCSRSDTGHYSLTLEN 217 (516)
Q Consensus 197 ~l~i~~~~~~d~g~Y~c~~~~ 217 (516)
.|.|.+++++|+|.|.|.+..
T Consensus 71 ~L~I~~~~~~Dsa~YyCa~~~ 91 (106)
T d1op3k1 71 TLTISGLQFDDFATYHCQHYA 91 (106)
T ss_dssp EEEEESCCGGGCSEEEEEEEC
T ss_pred EEEEccccccCCCcEeeeeCC
Confidence 999999999999999998653
|
| >d1kcvl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=97.72 E-value=6.6e-05 Score=57.11 Aligned_cols=72 Identities=13% Similarity=0.196 Sum_probs=51.1
Q ss_pred CcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeC--C------------eeeccC
Q psy7039 119 STLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSIN--G------------QVCQIG 184 (516)
Q Consensus 119 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~--~------------~~~~~~ 184 (516)
..|..+.+.+|++++|.|... ......+.|++. + ..-...
T Consensus 6 QsP~~l~v~~G~svtl~C~~s--------------------------~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~ 59 (107)
T d1kcvl1 6 QSPKSMGMSVGEAVTLNCKAS--------------------------ENVGTYVSWYQQKPGQSPVLLIYGASNRYTGVP 59 (107)
T ss_dssp ESCSEEEEETTCCEEEEEEES--------------------------SCCTTCEEEEEECTTSCCEEEEETTTEECTTCC
T ss_pred CcCCEEeECCCCCEEEEEEec--------------------------CCcCCceEEEEcccCCCCEEEEEecccccCCcc
Confidence 446678899999999999887 222233555541 1 111123
Q ss_pred CceEEeecCCeeEEEeccCCCCCCeeEEEEEE
Q psy7039 185 GRADVQTTKSETVLDIPFCSRSDTGHYSLTLE 216 (516)
Q Consensus 185 ~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~ 216 (516)
.++..........|.|.+++.+|+|.|.|.+.
T Consensus 60 ~~~~~~~~~~~~~L~I~~l~~~DSa~YyCa~~ 91 (107)
T d1kcvl1 60 DRFTGSGSATDFTLTISSVQADDDADYYCGQS 91 (107)
T ss_dssp TTEEEEEETTEEEEEESSCCGGGCEEEEEEEC
T ss_pred ceEEeeccCCeeecEEHhheecCCceEEEEec
Confidence 56666667778899999999999999999864
|
| >d2cdea1 b.1.1.1 (A:2-115) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=97.71 E-value=5.9e-05 Score=58.14 Aligned_cols=74 Identities=18% Similarity=0.282 Sum_probs=50.6
Q ss_pred CcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEee--------------CCeeeccC
Q psy7039 119 STLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSI--------------NGQVCQIG 184 (516)
Q Consensus 119 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~--------------~~~~~~~~ 184 (516)
..|..+.+.+|+.++|.|... ......+.|++ .+......
T Consensus 5 Q~P~~~~~~~G~~vtL~C~~~--------------------------~~~~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~ 58 (114)
T d2cdea1 5 QSPQSLIILEGKNCTLQCNYT--------------------------VSPFSNLRWYKQDTGRGPVSLTIMTFSENTKSN 58 (114)
T ss_dssp EECSEEEEETTCCCEEEEEEC--------------------------CSCCSEEEEEEECTTSCCCEEEEECSSCSCEEE
T ss_pred eeCCEEEEeCCCCEEEEEEEc--------------------------CCCccCceEEEecCCCceEEeeeeeeeeccccc
Confidence 446678899999999999987 33333455554 11111123
Q ss_pred CceEEee--cCCeeEEEeccCCCCCCeeEEEEEEcC
Q psy7039 185 GRADVQT--TKSETVLDIPFCSRSDTGHYSLTLENN 218 (516)
Q Consensus 185 ~~~~~~~--~~~~~~l~i~~~~~~d~g~Y~c~~~~~ 218 (516)
.++.... .....+|.|.+++.+|+|.|.|.+...
T Consensus 59 ~~~~~~~~~~~~~~sL~i~~~~~~Dsg~Y~Ca~~~~ 94 (114)
T d2cdea1 59 GRYTATLDADTKQSSLHITASQLSDSASYICVVSDR 94 (114)
T ss_dssp TTEEECBCSSSSEEEEEECSCCGGGCSEEEEEEECS
T ss_pred CccceeecCcccccccEEcccChhhCcccceeeecC
Confidence 4554442 335678999999999999999998764
|
| >d1cfba1 b.1.2.1 (A:610-709) Neuroglian, two amino proximal Fn3 repeats {Drosophila melanogaster [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Neuroglian, two amino proximal Fn3 repeats species: Drosophila melanogaster [TaxId: 7227]
Probab=97.70 E-value=3.3e-05 Score=58.03 Aligned_cols=48 Identities=25% Similarity=0.443 Sum_probs=39.5
Q ss_pred EecCCCCCCCCcccccccCCeEEEEeeCCCCCCCCCcceEEEEEEecCCCc
Q psy7039 446 VVDKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATGV 496 (516)
Q Consensus 446 v~~~p~~P~~~l~~~~~~~~~~~l~W~~p~~~~~~~i~~Y~v~~~~~~~~~ 496 (516)
|.+.|++| ..+.+. ...+++.|+|++|. +++++|.+|.|+|+......
T Consensus 2 V~dvP~~P-~~~~v~-~~~~sv~lsW~pp~-~~~~~i~~Y~v~~~~~~~~~ 49 (100)
T d1cfba1 2 VQDVPNAP-KLTGIT-CQADKAEIHWEQQG-DNRSPILHYTIQFNTSFTPA 49 (100)
T ss_dssp CCCCCCCC-EEEEEE-ECSSEEEEEEECCC-CTTSCCCEEEEEEEESSSTT
T ss_pred cccCCCcC-cCcEEE-EcCCEEEEEEcCCc-ccccceEEEEEEEecCCCCc
Confidence 56789988 788876 46789999999875 67889999999999876654
|
| >d1tjgl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Engineered (including hybrid species)
Probab=97.70 E-value=0.0001 Score=55.88 Aligned_cols=72 Identities=18% Similarity=0.177 Sum_probs=54.7
Q ss_pred ccccEEEEcCCeEEEEEEEeeecCCceEEEECCe--------------ecCCCCceEEEEcCCeEEEEEcCceecCCceE
Q psy7039 361 SIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGD--------------EVSPDGRIKFETSENQTIYRNKSAKRATDSGS 426 (516)
Q Consensus 361 ~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~--------------~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~ 426 (516)
.+..+.+.+|+.++|.|.........+.|++... ......++..........|+|.++.+ +|++.
T Consensus 7 ~P~sl~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~-~DsA~ 85 (107)
T d1tjgl1 7 SPSSLSASVGDRITITCRASQGVTSALAWYRQKPGSPPQLLIYDASSLESGVPSRFSGSGSGTEFTLTISTLRP-EDFAT 85 (107)
T ss_dssp ECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCG-GGCSE
T ss_pred eCCEEEECCCCCEEEEEEECCCCCccEEEEeccCCccceEEEeecccccCCCCcceEEeccCCEEEEEecccee-CcCce
Confidence 3566788999999999998765566889987321 11123467776677778999999999 99999
Q ss_pred EEEEEEc
Q psy7039 427 YTIQLVN 433 (516)
Q Consensus 427 y~c~a~n 433 (516)
|.|.+.+
T Consensus 86 YyCa~~~ 92 (107)
T d1tjgl1 86 YYCQQLH 92 (107)
T ss_dssp EEEEECS
T ss_pred EEEEECc
Confidence 9997654
|
| >d1ospl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=97.70 E-value=0.0001 Score=55.91 Aligned_cols=73 Identities=19% Similarity=0.136 Sum_probs=55.7
Q ss_pred ccccEEEEcCCeEEEEEEEeeecCCceEEEECC--ee------------cCCCCceEEEEcCCeEEEEEcCceecCCceE
Q psy7039 361 SIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNG--DE------------VSPDGRIKFETSENQTIYRNKSAKRATDSGS 426 (516)
Q Consensus 361 ~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~--~~------------l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~ 426 (516)
.+..+.+.+|++++|.|...+.....+.|++.. .. -....+|..........|+|.++.+ +|++.
T Consensus 7 sP~~ltv~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~i~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~-~Dsa~ 85 (107)
T d1ospl1 7 SSSSFSVSLGDRVTITCKASEDIYSRLAWYQQKPGNAPRLLISGATSLETWVPSRFSGSDSGKDYTLSITSLQT-EDVAT 85 (107)
T ss_dssp CCSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEECSSSSEEEEESSCCG-GGCSE
T ss_pred eCCEEEECCCCCEEEEEecCCCcccccEEEEcCCCccceeEEeeccccCCccccccceecCCCeEEeEEccccc-ccCCc
Confidence 356678999999999999876555579999731 10 1124577777777778999999999 99999
Q ss_pred EEEEEEcC
Q psy7039 427 YTIQLVNT 434 (516)
Q Consensus 427 y~c~a~n~ 434 (516)
|.|.+...
T Consensus 86 YyCa~~~~ 93 (107)
T d1ospl1 86 YFCQQYWS 93 (107)
T ss_dssp EEEEECSS
T ss_pred EEEeeccC
Confidence 99987643
|
| >d1l6za1 b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.70 E-value=1.9e-05 Score=60.16 Aligned_cols=26 Identities=19% Similarity=0.268 Sum_probs=22.9
Q ss_pred eeEEEeccCCCCCCeeEEEEEEcCCC
Q psy7039 195 ETVLDIPFCSRSDTGHYSLTLENNLG 220 (516)
Q Consensus 195 ~~~l~i~~~~~~d~g~Y~c~~~~~~g 220 (516)
+.+|.|.+++.+|+|.|+|.+.+..+
T Consensus 70 ngSL~I~~v~~~D~G~Y~c~v~~~~~ 95 (107)
T d1l6za1 70 NGSLLFQMITMKDMGVYTLDMTDENY 95 (107)
T ss_dssp TSCEEECSCCGGGCEEEEEEEEETTE
T ss_pred cccEEEcCCCchhCEEEEEEEEECCC
Confidence 46899999999999999999977654
|
| >d1c5cl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=97.69 E-value=0.00012 Score=55.47 Aligned_cols=72 Identities=14% Similarity=0.088 Sum_probs=54.1
Q ss_pred cccEEEEcCCeEEEEEEEeeecCCceEEEEC--Cee------------cCCCCceEEEEcCCeEEEEEcCceecCCceEE
Q psy7039 362 IRDMTVLAGEEFTITVPFSGRPKPTPIWTVN--GDE------------VSPDGRIKFETSENQTIYRNKSAKRATDSGSY 427 (516)
Q Consensus 362 ~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~--~~~------------l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y 427 (516)
+..+.+.+|+.++|.|.........+.|++. |.. .....++......+...|.|.++.+ +|++.|
T Consensus 8 P~s~~~~~G~svtl~C~~s~~~~~~~~Wyrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~-~Dsa~Y 86 (107)
T d1c5cl1 8 PSSLSASLGERVSLTCRTSQEISGYLSWLQQKPDGTIKRLIYDATKLDSGAPKRFSGSRSGSDYSLTISSLES-EDFADY 86 (107)
T ss_dssp CSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCG-GGCSEE
T ss_pred CCEEEECCCCCEEEEEEeCCCCCCCEEEEEcCCCCcceeEEeccccccCCCCCceEecccCCEEEEEEhhhcc-cCCeEE
Confidence 4567789999999999987665667899973 211 1123456666666778999999999 999999
Q ss_pred EEEEEcC
Q psy7039 428 TIQLVNT 434 (516)
Q Consensus 428 ~c~a~n~ 434 (516)
.|.+.+.
T Consensus 87 yCa~~~~ 93 (107)
T d1c5cl1 87 YCLQYAS 93 (107)
T ss_dssp EEEECSS
T ss_pred EEecCcC
Confidence 9987643
|
| >d3bp5a1 b.1.1.1 (A:1-114) Programmed cell death protein 1, PD1, extracellular domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Programmed cell death protein 1, PD1, extracellular domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.69 E-value=0.00011 Score=56.47 Aligned_cols=87 Identities=13% Similarity=0.058 Sum_probs=53.1
Q ss_pred CcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecC--cCceeeEEee-CCeeeccCCceEEeec--C
Q psy7039 119 STLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLS--EPFLNHGWSI-NGQVCQIGGRADVQTT--K 193 (516)
Q Consensus 119 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~p~~~i~W~~-~~~~~~~~~~~~~~~~--~ 193 (516)
..|..+.+.+|+.++|.|.+.+ ...+..+.|++.. .....+..+. +........|+.+... .
T Consensus 4 qsP~~l~v~~G~~vtl~C~~~~-------------~~~~~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~~~rf~~~~~~~~ 70 (114)
T d3bp5a1 4 FYPAWLTVSEGANATFTCSLSN-------------WSEDLMLNWNRLSPSNQTEKQAAFSNGLSQPVQDARFQIIQLPNR 70 (114)
T ss_dssp EESSEEEEETTCCEEEEEEESC-------------CCTTCEEEEEEECTTCCEEEEEEEETTEEEESSCTTEEEEECTTS
T ss_pred ECCCeEEECCCCCEEEEEEECC-------------CCCcceEEEEEECCCCCCeeeEEeeeccccccccCcceEEEeCCC
Confidence 3566788999999999999861 1122334555431 1111122222 2222233456666543 3
Q ss_pred CeeEEEeccCCCCCCeeEEEEEEcC
Q psy7039 194 SETVLDIPFCSRSDTGHYSLTLENN 218 (516)
Q Consensus 194 ~~~~l~i~~~~~~d~g~Y~c~~~~~ 218 (516)
....|.|.+++++|+|.|.|.+...
T Consensus 71 ~~~~L~I~~~~~~Dsg~YyCa~~~~ 95 (114)
T d3bp5a1 71 HDFHMNILDTRRNDSGIYLCGAISL 95 (114)
T ss_dssp SEEEEEESSCCGGGCEEEEEEEECS
T ss_pred CEEEEEECccCcCCCeEEEEEEEeC
Confidence 4567999999999999999987643
|
| >d1kcvl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=97.69 E-value=0.00017 Score=54.65 Aligned_cols=72 Identities=17% Similarity=0.134 Sum_probs=55.2
Q ss_pred ccccEEEEcCCeEEEEEEEeeecCCceEEEECC--ee------------cCCCCceEEEEcCCeEEEEEcCceecCCceE
Q psy7039 361 SIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNG--DE------------VSPDGRIKFETSENQTIYRNKSAKRATDSGS 426 (516)
Q Consensus 361 ~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~--~~------------l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~ 426 (516)
.+..+.+.+|++++|.|.........+.|++.. .. .....++..........|+|.++.+ +|++.
T Consensus 7 sP~~l~v~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~-~DSa~ 85 (107)
T d1kcvl1 7 SPKSMGMSVGEAVTLNCKASENVGTYVSWYQQKPGQSPVLLIYGASNRYTGVPDRFTGSGSATDFTLTISSVQA-DDDAD 85 (107)
T ss_dssp SCSEEEEETTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCG-GGCEE
T ss_pred cCCEEeECCCCCEEEEEEecCCcCCceEEEEcccCCCCEEEEEecccccCCccceEEeeccCCeeecEEHhhee-cCCce
Confidence 356678999999999999876665679999731 10 1124567777777788999999999 99999
Q ss_pred EEEEEEc
Q psy7039 427 YTIQLVN 433 (516)
Q Consensus 427 y~c~a~n 433 (516)
|.|.+..
T Consensus 86 YyCa~~~ 92 (107)
T d1kcvl1 86 YYCGQSY 92 (107)
T ss_dssp EEEEECS
T ss_pred EEEEecC
Confidence 9998754
|
| >d1kgcd1 b.1.1.1 (D:2-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), alpha-chain [TaxId: 9606]
Probab=97.68 E-value=7.7e-05 Score=57.24 Aligned_cols=85 Identities=8% Similarity=0.056 Sum_probs=50.4
Q ss_pred cccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCc-Ccee-eEEeeCCeeeccCCceEEeecCCeeE
Q psy7039 120 TLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSE-PFLN-HGWSINGQVCQIGGRADVQTTKSETV 197 (516)
Q Consensus 120 ~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~-i~W~~~~~~~~~~~~~~~~~~~~~~~ 197 (516)
.|..+.+.+|++++|.|... +......+.|++... ..+. |.+......-....++.+..+.....
T Consensus 4 qP~~~~~~~G~svtl~C~~s-------------~~~~~~~~~WYrQ~pg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (112)
T d1kgcd1 4 QPNSMESNEEEPVHLPCNHS-------------TISGTDYIHWYRQLPSQGPEYVIHGLTSNVNNRMASLAIAEDRKSST 70 (112)
T ss_dssp CCSEEEEETTSCEEEEEEES-------------CCCTTCCEEEEEECTTSCCEEEEEESSSSEECSSEEEEECTTSSEEE
T ss_pred CCCEEEECCCCCEEEEEEEe-------------CCCccccEEEEEECCCCCcceeeeecceeccccccceeecccCCeeE
Confidence 34568899999999999876 111122244554311 1111 11111111111223455555566778
Q ss_pred EEeccCCCCCCeeEEEEEEc
Q psy7039 198 LDIPFCSRSDTGHYSLTLEN 217 (516)
Q Consensus 198 l~i~~~~~~d~g~Y~c~~~~ 217 (516)
|.|.+++.+|+|.|.|.+..
T Consensus 71 L~i~~~~~~Dsa~YyCa~~~ 90 (112)
T d1kgcd1 71 LILHRATLRDAAVYYCILPL 90 (112)
T ss_dssp EEESSCCGGGCEEEEEECCC
T ss_pred EEEeecccccceeEeeeEec
Confidence 99999999999999997653
|
| >d1d5il1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=97.67 E-value=6.7e-05 Score=56.97 Aligned_cols=85 Identities=15% Similarity=0.133 Sum_probs=50.8
Q ss_pred CcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcC-cee-eEEeeCCeeeccCCceEEeecCCee
Q psy7039 119 STLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEP-FLN-HGWSINGQVCQIGGRADVQTTKSET 196 (516)
Q Consensus 119 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~-i~W~~~~~~~~~~~~~~~~~~~~~~ 196 (516)
..|..+.+.+|++++|.|...+. ....+.|++.... .+. +........-....++.....+...
T Consensus 6 Q~P~sl~~~~G~svtl~C~~s~~--------------~~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~ 71 (107)
T d1d5il1 6 QSPSSMYASLGERVTITCKASQD--------------INSYLSWFQQKPGKSPKTLIYRANRLVDGVPSRFSGSGSGQDY 71 (107)
T ss_dssp EECSEEEECTTCCEEEEEEESSC--------------CTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEE
T ss_pred eeCCEEEECCCCCEEEEEEcCCC--------------CCCccceeEeccccCeEEEEEeccccccCcCCceeecccCCEE
Confidence 34566889999999999987610 1112334432111 011 1110011111123567766677778
Q ss_pred EEEeccCCCCCCeeEEEEEEc
Q psy7039 197 VLDIPFCSRSDTGHYSLTLEN 217 (516)
Q Consensus 197 ~l~i~~~~~~d~g~Y~c~~~~ 217 (516)
.|.|.+++.+|+|.|.|....
T Consensus 72 ~L~I~~~~~~Dsa~YyCa~~~ 92 (107)
T d1d5il1 72 SLTISSLEYEDMGIYYCLQYD 92 (107)
T ss_dssp EEEESSCCGGGCEEEEEEECS
T ss_pred EccccccCCcCCEEEEeeecc
Confidence 999999999999999997543
|
| >d1rzfl1 b.1.1.1 (L:2-108) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain lambda variable domain, VL-lambda species: Human (Homo sapiens), cluster 2 [TaxId: 9606]
Probab=97.67 E-value=7.6e-05 Score=57.16 Aligned_cols=85 Identities=14% Similarity=0.109 Sum_probs=52.3
Q ss_pred ccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCc-CceeeE-EeeCCeeeccCCceEEeecCCeeEE
Q psy7039 121 LNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSE-PFLNHG-WSINGQVCQIGGRADVQTTKSETVL 198 (516)
Q Consensus 121 ~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~i~-W~~~~~~~~~~~~~~~~~~~~~~~l 198 (516)
+..+.+.+|++++|.|...+ ..-....+.|+.... ..+.+. +...........++.....+....|
T Consensus 7 p~s~~v~~G~svtl~C~~s~------------~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L 74 (111)
T d1rzfl1 7 PPSVSAAPGQKVTISCSGSS------------SNIGNNDVSWYQQFPGTVPKLVIYENNERPSGIPDRFSGSKSGTSATL 74 (111)
T ss_dssp CSEEEECTTSCEEEEEECCC------------CCCCTSCEEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEE
T ss_pred CcceEeCCCCCEEEEEEECC------------cCCcCCcccceeeecccceEEEeeecCCCccccccceeeeCCCCEeee
Confidence 34688999999999998761 111223355554311 111111 1111111122356766667778899
Q ss_pred EeccCCCCCCeeEEEEEEc
Q psy7039 199 DIPFCSRSDTGHYSLTLEN 217 (516)
Q Consensus 199 ~i~~~~~~d~g~Y~c~~~~ 217 (516)
.|.+++.+|+|.|.|.+..
T Consensus 75 ~I~~~~~~Dsa~YyCA~~~ 93 (111)
T d1rzfl1 75 GITGLQTGDEADYYCGTWD 93 (111)
T ss_dssp EESSCCGGGCSEEEEEEEE
T ss_pred EEeeeccccCcceEEeecC
Confidence 9999999999999998754
|
| >d1jhll_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=97.66 E-value=0.00012 Score=55.58 Aligned_cols=85 Identities=12% Similarity=0.097 Sum_probs=49.5
Q ss_pred CcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcC-ceeeEEeeCCe-eeccCCceEEeecCCee
Q psy7039 119 STLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEP-FLNHGWSINGQ-VCQIGGRADVQTTKSET 196 (516)
Q Consensus 119 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~i~W~~~~~-~~~~~~~~~~~~~~~~~ 196 (516)
..|..+.+.+|++++|.|...+ .. ...+-|++.... .+....+.... ......++.....+...
T Consensus 6 Q~P~~l~~~~G~svtL~C~~s~-------------~~-~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 71 (108)
T d1jhll_ 6 QSPSYLVASPGETITINCRASK-------------SI-SKSLAWYQEKPGKTNNLLIYSGSTLQSGIPSRFSGSGSGTDF 71 (108)
T ss_dssp EECSEEEECTTSCEEEEEEESS-------------CC-TTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEESSSEE
T ss_pred ccCCeEEecCCCCEEEEEEccC-------------Cc-CCceEEEEccccCCCeEEEEeeccccCCccccccccCCCCEE
Confidence 4466788999999999998871 00 112333332111 11111111111 11112445555566778
Q ss_pred EEEeccCCCCCCeeEEEEEEc
Q psy7039 197 VLDIPFCSRSDTGHYSLTLEN 217 (516)
Q Consensus 197 ~l~i~~~~~~d~g~Y~c~~~~ 217 (516)
.|.|.+++.+|+|.|.|....
T Consensus 72 ~L~i~~l~~~Dsa~YyCA~~~ 92 (108)
T d1jhll_ 72 TLTISSLEPEDFAMYICQQHN 92 (108)
T ss_dssp EEEECSCCTTCCSEEEEEECS
T ss_pred EeEeeeeEeccceEEEEeeCC
Confidence 999999999999999997543
|
| >d1mqkl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=97.66 E-value=7.2e-05 Score=56.96 Aligned_cols=72 Identities=14% Similarity=0.180 Sum_probs=50.3
Q ss_pred CcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEee--CCee------------eccC
Q psy7039 119 STLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSI--NGQV------------CQIG 184 (516)
Q Consensus 119 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~--~~~~------------~~~~ 184 (516)
..|..+.+.+|++++|.|... ......+.|++ ++.. -...
T Consensus 6 QsP~~l~~~~G~svtL~C~~s--------------------------~~~~~~i~WYrQ~pg~~p~~li~~~~~~~~~~~ 59 (109)
T d1mqkl_ 6 QTPVSLSASVGETVTITCRAS--------------------------ENIYSYLAWYQQKQGKSPQFLVYNAKTLGEGVP 59 (109)
T ss_dssp EECSEEEECTTCCEEEEEEES--------------------------SCCTTCEEEEEECTTSCCEEEEETTTEECTTCC
T ss_pred CcCCEEEECCCCCEEEEEEeC--------------------------CCcCcccceeeccccCCCeEEEEeeccccCCcC
Confidence 345678899999999999887 22223344554 1110 0113
Q ss_pred CceEEeecCCeeEEEeccCCCCCCeeEEEEEE
Q psy7039 185 GRADVQTTKSETVLDIPFCSRSDTGHYSLTLE 216 (516)
Q Consensus 185 ~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~ 216 (516)
.++.....+....|.|.+++.+|+|.|.|.+.
T Consensus 60 ~~fs~~~~~~~~~L~I~~~~~~DSa~YyCA~~ 91 (109)
T d1mqkl_ 60 SRFSGSGSGTQFSLKINSLLPEDFGSYYCQHH 91 (109)
T ss_dssp TTEEEEEETTEEEEEESSCCGGGCEEEEEEEC
T ss_pred CCEEEeccCCEEEEEEccccccCCeeEEEeee
Confidence 56666667778899999999999999999865
|
| >d1ncna_ b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD86 (b7-2), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.66 E-value=0.00012 Score=55.84 Aligned_cols=28 Identities=14% Similarity=0.175 Sum_probs=23.3
Q ss_pred cCCeeEEEeccCCCCCCeeEEEEEEcCC
Q psy7039 192 TKSETVLDIPFCSRSDTGHYSLTLENNL 219 (516)
Q Consensus 192 ~~~~~~l~i~~~~~~d~g~Y~c~~~~~~ 219 (516)
.....+|.|.+++.+|+|.|.|.+....
T Consensus 65 ~~~~~sL~I~~v~~~D~G~Y~C~V~~~~ 92 (110)
T d1ncna_ 65 DSDSWTLRLHNLQIKDKGLYQCIIHHKK 92 (110)
T ss_dssp ETTTTEEEECSCCGGGCEEEEEEEEEEC
T ss_pred cCCeEEEEECCCChhHCEEEEEEEEecC
Confidence 3456789999999999999999986543
|
| >d1lp9e1 b.1.1.1 (E:0-117) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]
Probab=97.65 E-value=5.7e-05 Score=58.31 Aligned_cols=74 Identities=15% Similarity=0.011 Sum_probs=48.8
Q ss_pred CcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeC--Ce------------eeccC
Q psy7039 119 STLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSIN--GQ------------VCQIG 184 (516)
Q Consensus 119 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~--~~------------~~~~~ 184 (516)
..+..+.+.+|+.++|.|... ......+.|++. +. .....
T Consensus 6 Q~~~~v~v~~G~~vtL~C~~~--------------------------~~~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~ 59 (115)
T d1lp9e1 6 QTEGLVTLTEGLPVMLNCTYQ--------------------------STYSPFLFWYVQHLNEAPKLLLKSFTDNKRPEH 59 (115)
T ss_dssp ECCSEEEEETTSCEEECEEEE--------------------------CSSSCCEEEEEECTTSCCEEEEESCSSTTCCCC
T ss_pred cCCCeEEECCCCCEEEEEEEe--------------------------CCCcCCeeEEEeCCCCceeeeeeeeeccCCcce
Confidence 345668899999999999988 333344555541 11 11112
Q ss_pred CceEEee--cCCeeEEEeccCCCCCCeeEEEEEEcC
Q psy7039 185 GRADVQT--TKSETVLDIPFCSRSDTGHYSLTLENN 218 (516)
Q Consensus 185 ~~~~~~~--~~~~~~l~i~~~~~~d~g~Y~c~~~~~ 218 (516)
.++.+.. ......|.|.+++++|+|.|.|.+...
T Consensus 60 ~~~~~~~~~~~~~~~L~I~~~~~~Dsg~YyCa~~~~ 95 (115)
T d1lp9e1 60 QGFHATLHKSSSSFHLQKSSAQLSDSALYYCALFLA 95 (115)
T ss_dssp SSCEECCBGGGTBCCEEESSCCGGGCEEEEEEEEEC
T ss_pred eeeeeeccCCCCeEEeeccccccccCccceEEEEcC
Confidence 3444432 334567999999999999999987643
|
| >d1i8ka_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=97.63 E-value=7.7e-05 Score=56.50 Aligned_cols=72 Identities=17% Similarity=0.203 Sum_probs=54.6
Q ss_pred cccEEEEcCCeEEEEEEEeeecCCceEEEEC--Cee------------cCCCCceEEEEcCCeEEEEEcCceecCCceEE
Q psy7039 362 IRDMTVLAGEEFTITVPFSGRPKPTPIWTVN--GDE------------VSPDGRIKFETSENQTIYRNKSAKRATDSGSY 427 (516)
Q Consensus 362 ~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~--~~~------------l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y 427 (516)
+..+.+.+|++++|.|.........+.|++. +.. -....+|.....++...|+|.++.+ +|++.|
T Consensus 8 P~slsv~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~-~Dsa~Y 86 (106)
T d1i8ka_ 8 PASLSVATGEKVTIRCMTSTDIDDDMNWYQQKPGEPPKFLISEGNTLRPGVPSRFSSSGTGTDFVFTIENTLS-EDVGDY 86 (106)
T ss_dssp CSEEECCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCG-GGCEEE
T ss_pred CCEEEECCCCCEEEEEEeCCCCCccEEEEeCCCCCceEEEEeccCccccCCCcceeEeCCCCeeeecccCCcc-ccCEEE
Confidence 4567789999999999886655557899863 211 1134577777777778999999999 999999
Q ss_pred EEEEEcC
Q psy7039 428 TIQLVNT 434 (516)
Q Consensus 428 ~c~a~n~ 434 (516)
.|.+.+.
T Consensus 87 yCa~~~~ 93 (106)
T d1i8ka_ 87 YCLQSFN 93 (106)
T ss_dssp EEEECSS
T ss_pred eEecCcc
Confidence 9986543
|
| >d2fx7l1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 3.2 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Human (Homo sapiens), cluster 3.2 [TaxId: 9606]
Probab=97.63 E-value=7.3e-05 Score=56.95 Aligned_cols=85 Identities=9% Similarity=0.060 Sum_probs=52.1
Q ss_pred CcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCc-CceeeEEeeC-CeeeccCCceEEeecCCee
Q psy7039 119 STLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSE-PFLNHGWSIN-GQVCQIGGRADVQTTKSET 196 (516)
Q Consensus 119 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~i~W~~~-~~~~~~~~~~~~~~~~~~~ 196 (516)
..|..+.+.+|++++|.|...+ ...+..+.|++... ..+.+..+.. ........++.....+...
T Consensus 6 Q~P~~~~v~~G~tv~l~C~~~~-------------~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~s~~~~~~~~ 72 (108)
T d2fx7l1 6 QSPGTQSLSPGERATLSCRASQ-------------SVGNNKLAWYQQRPGQAPRLLIYGASSRPSGVADRFSGSGSGTDF 72 (108)
T ss_dssp CSSSEEEECTTCCEEEEEEESS-------------CCGGGCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEE
T ss_pred eeCCeEEECCCCCEEEEEEeec-------------CCCCccceeEeccccCCCEEEEeeecccccCCccceeeecCCCEE
Confidence 4566788999999999998761 11122344544311 1112221111 1111123566666666778
Q ss_pred EEEeccCCCCCCeeEEEEEE
Q psy7039 197 VLDIPFCSRSDTGHYSLTLE 216 (516)
Q Consensus 197 ~l~i~~~~~~d~g~Y~c~~~ 216 (516)
.|.|.+++.+|+|.|.|.+.
T Consensus 73 ~L~I~~~~~~Dsa~YyCa~~ 92 (108)
T d2fx7l1 73 TLTISRLEPEDFAVYYCQQY 92 (108)
T ss_dssp EEEESSCCGGGCSEEEEEEC
T ss_pred EEEehHheecccEEEeeecC
Confidence 99999999999999999764
|
| >d1akjd_ b.1.1.1 (D:) CD8 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD8 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.62 E-value=4.9e-05 Score=58.62 Aligned_cols=85 Identities=13% Similarity=0.085 Sum_probs=52.0
Q ss_pred cccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCc---CceeeEEee--CCeeec---cCCceEEee
Q psy7039 120 TLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSE---PFLNHGWSI--NGQVCQ---IGGRADVQT 191 (516)
Q Consensus 120 ~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---p~~~i~W~~--~~~~~~---~~~~~~~~~ 191 (516)
.|..+.+..|++++|.|...+ ......+.|++... +.+.+.-+. +..... ...|+....
T Consensus 6 sP~~~t~~~G~~vtL~C~~~~-------------~~~~~~i~WyrQ~~g~~~~~~~~i~~~~~~~~~~~~~~~~rfs~~~ 72 (114)
T d1akjd_ 6 SPLDRTWNLGETVELKCQVLL-------------SNPTSGCSWLFQPRGAAASPTFLLYLSQNKPKAAEGLDTQRFSGKR 72 (114)
T ss_dssp ECCSCCCCTTCCEEEEEEECC-------------SSCCSCEEEEEECSSTTCCCEEEEEESSSCCEECTTCCTTTEEEEE
T ss_pred CCCcEeccCCCcEEEEEEeCC-------------CcCCCCEEEEEECCCCCcEEEEEEecCCCeeEcCCCCCCcEEEEEC
Confidence 455577889999999998871 11222345555421 111111111 111111 124666666
Q ss_pred cCCeeEEEeccCCCCCCeeEEEEEEc
Q psy7039 192 TKSETVLDIPFCSRSDTGHYSLTLEN 217 (516)
Q Consensus 192 ~~~~~~l~i~~~~~~d~g~Y~c~~~~ 217 (516)
.+....|.|.+++.+|+|.|.|.+..
T Consensus 73 ~~~~~~L~I~~l~~~Dsg~YyCa~~~ 98 (114)
T d1akjd_ 73 LGDTFVLTLSDFRRENEGYYFCSALS 98 (114)
T ss_dssp ETTEEEEEESSCCGGGCEEEEEEEEE
T ss_pred CCCChhcEEccCCCCCCEEEeEeEcC
Confidence 67778999999999999999998764
|
| >d3bp5a1 b.1.1.1 (A:1-114) Programmed cell death protein 1, PD1, extracellular domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Programmed cell death protein 1, PD1, extracellular domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.61 E-value=0.00035 Score=53.54 Aligned_cols=74 Identities=19% Similarity=0.180 Sum_probs=52.9
Q ss_pred ccccEEEEcCCeEEEEEEEeee-cCCceEEEEC--Cee-------------cCCCCceEEEEcC--CeEEEEEcCceecC
Q psy7039 361 SIRDMTVLAGEEFTITVPFSGR-PKPTPIWTVN--GDE-------------VSPDGRIKFETSE--NQTIYRNKSAKRAT 422 (516)
Q Consensus 361 ~~~~~~v~~g~~~~l~C~~~g~-p~~~i~W~~~--~~~-------------l~~~~~~~~~~~~--~~~~l~i~~~~~~~ 422 (516)
.+..+.+.+|+.++|.|.+... ....+.|++. +.. ...+.+|.+.... ....|.|.++.+ .
T Consensus 5 sP~~l~v~~G~~vtl~C~~~~~~~~~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~-~ 83 (114)
T d3bp5a1 5 YPAWLTVSEGANATFTCSLSNWSEDLMLNWNRLSPSNQTEKQAAFSNGLSQPVQDARFQIIQLPNRHDFHMNILDTRR-N 83 (114)
T ss_dssp ESSEEEEETTCCEEEEEEESCCCTTCEEEEEEECTTCCEEEEEEEETTEEEESSCTTEEEEECTTSSEEEEEESSCCG-G
T ss_pred CCCeEEECCCCCEEEEEEECCCCCcceEEEEEECCCCCCeeeEEeeeccccccccCcceEEEeCCCCEEEEEECccCc-C
Confidence 3566789999999999998643 3446889873 110 1123566665433 456799999999 9
Q ss_pred CceEEEEEEEcCC
Q psy7039 423 DSGSYTIQLVNTV 435 (516)
Q Consensus 423 ~~g~y~c~a~n~~ 435 (516)
|+|.|.|.+....
T Consensus 84 Dsg~YyCa~~~~~ 96 (114)
T d3bp5a1 84 DSGIYLCGAISLH 96 (114)
T ss_dssp GCEEEEEEEECSS
T ss_pred CCeEEEEEEEeCC
Confidence 9999999987554
|
| >d1tjgl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Engineered (including hybrid species)
Probab=97.61 E-value=0.0001 Score=55.89 Aligned_cols=84 Identities=12% Similarity=0.132 Sum_probs=52.1
Q ss_pred CcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCc--CceeeEEeeCCeeeccCCceEEeecCCee
Q psy7039 119 STLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSE--PFLNHGWSINGQVCQIGGRADVQTTKSET 196 (516)
Q Consensus 119 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--p~~~i~W~~~~~~~~~~~~~~~~~~~~~~ 196 (516)
..|..+.+.+|++++|.|...+ .....+.|++... ....+.+...........++.....+...
T Consensus 6 Q~P~sl~~~~G~svtL~C~~s~--------------~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 71 (107)
T d1tjgl1 6 QSPSSLSASVGDRITITCRASQ--------------GVTSALAWYRQKPGSPPQLLIYDASSLESGVPSRFSGSGSGTEF 71 (107)
T ss_dssp EECSEEEECTTCCEEEEEEESS--------------CCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEE
T ss_pred eeCCEEEECCCCCEEEEEEECC--------------CCCccEEEEeccCCccceEEEeecccccCCCCcceEEeccCCEE
Confidence 4467788999999999998871 0112334444311 11112111111111223566666667788
Q ss_pred EEEeccCCCCCCeeEEEEEE
Q psy7039 197 VLDIPFCSRSDTGHYSLTLE 216 (516)
Q Consensus 197 ~l~i~~~~~~d~g~Y~c~~~ 216 (516)
.|.|.+++++|+|.|.|...
T Consensus 72 ~L~I~~l~~~DsA~YyCa~~ 91 (107)
T d1tjgl1 72 TLTISTLRPEDFATYYCQQL 91 (107)
T ss_dssp EEEESSCCGGGCSEEEEEEC
T ss_pred EEEeccceeCcCceEEEEEC
Confidence 99999999999999999754
|
| >d1ucta1 b.1.1.4 (A:2-100) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Ig alpha Fc receptor, FCARI (CD89) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.61 E-value=5.9e-05 Score=56.48 Aligned_cols=79 Identities=13% Similarity=0.047 Sum_probs=50.2
Q ss_pred CCccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccC-CceEEee
Q psy7039 113 APRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIG-GRADVQT 191 (516)
Q Consensus 113 ~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~-~~~~~~~ 191 (516)
+|.|. ..+. ..|..|+.++|.|... .+...+.|++++...... .+.....
T Consensus 7 kPsLs-a~P~-~~V~~G~~VTL~C~~~---------------------------~~~~~f~l~k~g~~~~~~~~~~~~~~ 57 (99)
T d1ucta1 7 MPFIS-AKSS-PVIPLDGSVKIQCQAI---------------------------REAYLTQLMIIKNSTYREIGRRLKFW 57 (99)
T ss_dssp CCCEE-ESSC-SEEETTCCEEEEECCC---------------------------TTCSEEEEEEEETTEEEECSEECC--
T ss_pred CCEEE-ecCC-CceeCCCeEEEEEcCC---------------------------CCCcEEEEEECCCcCceeccccccCC
Confidence 45554 3333 3578999999999876 345677787765422111 1111111
Q ss_pred cCCeeEEEeccCCCCCCeeEEEEEEcCCC
Q psy7039 192 TKSETVLDIPFCSRSDTGHYSLTLENNLG 220 (516)
Q Consensus 192 ~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g 220 (516)
......+.|.+++..|+|.|+|.+.+...
T Consensus 58 ~~~~a~F~l~~vt~~~~G~Y~C~y~~~~~ 86 (99)
T d1ucta1 58 NETDPEFVIDHMDANKAGRYQCQYRIGHY 86 (99)
T ss_dssp --CCCEEEECSCCGGGCEEEEEEEEETTT
T ss_pred CCceEEEEecCCCHHHCceEEEEEECCCc
Confidence 23456799999999999999999887543
|
| >d1dr9a1 b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD80, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.61 E-value=0.00011 Score=55.51 Aligned_cols=77 Identities=12% Similarity=0.050 Sum_probs=49.5
Q ss_pred eEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeec----------c--CCceEEee
Q psy7039 124 VKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQ----------I--GGRADVQT 191 (516)
Q Consensus 124 ~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~----------~--~~~~~~~~ 191 (516)
+.+..|+.+.|.|.+.. +.. ......+.|.+++..+. . ..|....
T Consensus 4 Vt~~~G~~a~L~C~~~~----------~~~------------~~~~~~v~w~~~~~~v~~~~~~~~~~~~~~~~r~~~~- 60 (105)
T d1dr9a1 4 VTKEVKEVATLSCGHNV----------SVE------------ELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFD- 60 (105)
T ss_dssp EEEETTSCEEECCSCCC----------CTT------------HHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEEE-
T ss_pred EEEEeCCCEEEEEEECC----------ccc------------ceeEEEEEEEecceEEEEEEeccceeecceeeeeeec-
Confidence 67889999999998761 000 01123566666554431 1 1344443
Q ss_pred cCCeeEEEeccCCCCCCeeEEEEEEcCCCceE
Q psy7039 192 TKSETVLDIPFCSRSDTGHYSLTLENNLGTAT 223 (516)
Q Consensus 192 ~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~ 223 (516)
..++.+|.|.+++.+|+|.|.|.+.+..+...
T Consensus 61 ~~g~~sL~I~~v~~~D~G~Y~C~V~~~~~~~~ 92 (105)
T d1dr9a1 61 ITNNLSIVILALRPSDEGTYECVVLKYEKDAF 92 (105)
T ss_dssp STTTTEEEECSCCGGGCEEEEEEEEECCTTSC
T ss_pred cCCcEEEEECcCChHHCeEEEEEEEeCCCCCe
Confidence 23456999999999999999999976544443
|
| >d1w72l1 b.1.1.1 (L:1-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain lambda variable domain, VL-lambda species: Human (Homo sapiens), cluster 5 [TaxId: 9606]
Probab=97.60 E-value=0.00014 Score=55.21 Aligned_cols=82 Identities=12% Similarity=0.107 Sum_probs=49.1
Q ss_pred cceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcC--ceeeEEeeCCeeeccCCceEEeecCCeeEEE
Q psy7039 122 NDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEP--FLNHGWSINGQVCQIGGRADVQTTKSETVLD 199 (516)
Q Consensus 122 ~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p--~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~ 199 (516)
..+.+.+|++++|.|...+ -....+-|++.... ...+.+...........++.....+....|.
T Consensus 8 ~sl~~~~G~svtl~C~~~~--------------~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~ 73 (109)
T d1w72l1 8 PSVSVAPGQTARITCGGNN--------------IGSRSVHWYQQKPGQAPVLVVYDDSDRPSGIPERFSGSNSGNMATLT 73 (109)
T ss_dssp SEEEECTTSCEEEEEECTT--------------GGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEE
T ss_pred CeEEECCCCCEEEEEEcCC--------------CCCcceeeeeccccceeEEEEEccccCCCceeeeEeeecCCCccceE
Confidence 4588899999999998761 01112334332111 0011111111111123566666677788999
Q ss_pred eccCCCCCCeeEEEEEEc
Q psy7039 200 IPFCSRSDTGHYSLTLEN 217 (516)
Q Consensus 200 i~~~~~~d~g~Y~c~~~~ 217 (516)
|.+++.+|++.|.|.+..
T Consensus 74 I~~l~~~DsavYyCA~~~ 91 (109)
T d1w72l1 74 ISRVEAGDEADYYCQVWD 91 (109)
T ss_dssp ESSCCGGGCEEEEEEEEE
T ss_pred EeeeccCCCEEEEEEecC
Confidence 999999999999998764
|
| >d1j1pl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=97.60 E-value=0.00011 Score=55.73 Aligned_cols=72 Identities=17% Similarity=0.164 Sum_probs=55.3
Q ss_pred cccEEEEcCCeEEEEEEEeeecCCceEEEECC--ee------------cCCCCceEEEEcCCeEEEEEcCceecCCceEE
Q psy7039 362 IRDMTVLAGEEFTITVPFSGRPKPTPIWTVNG--DE------------VSPDGRIKFETSENQTIYRNKSAKRATDSGSY 427 (516)
Q Consensus 362 ~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~--~~------------l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y 427 (516)
+..+.+.+|++++|.|.........+.|++.. .. -....++..........|+|.++.+ +|+|.|
T Consensus 8 p~~l~v~~G~~vtL~C~~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~-~Dsa~Y 86 (107)
T d1j1pl_ 8 PATLSVTPGNSVSLSCRASQSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVET-EDFGMY 86 (107)
T ss_dssp CSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCG-GGCEEE
T ss_pred CCeEEECCCCCEEEEEEecCCCCcceEEEEeCCCCccEEeeecccCCCceeCCcceecccCCEEEEEEcccCc-CCCEEE
Confidence 45678899999999999865555679998732 11 1124577777777888999999999 999999
Q ss_pred EEEEEcC
Q psy7039 428 TIQLVNT 434 (516)
Q Consensus 428 ~c~a~n~ 434 (516)
.|.+.+.
T Consensus 87 yCa~~~~ 93 (107)
T d1j1pl_ 87 FCQQANS 93 (107)
T ss_dssp EEEECSS
T ss_pred EEEcCCC
Confidence 9977543
|
| >d1mexl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=97.59 E-value=0.00023 Score=53.84 Aligned_cols=72 Identities=17% Similarity=0.138 Sum_probs=54.4
Q ss_pred ccccEEEEcCCeEEEEEEEeeecCCceEEEECC--ee------------cCCCCceEEEEcCCeEEEEEcCceecCCceE
Q psy7039 361 SIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNG--DE------------VSPDGRIKFETSENQTIYRNKSAKRATDSGS 426 (516)
Q Consensus 361 ~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~--~~------------l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~ 426 (516)
.+..+.+.+|+.++|.|.........+.|++.. .. -....+|..........|+|.++.+ +|++.
T Consensus 7 ~p~~l~~~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~-~DsA~ 85 (107)
T d1mexl1 7 SQKFMSTSLGNRVSVTCKASQNVGTNVAWFQQKPGQSPKTLIYSASYRYSGVPDRFTGSGSGTDFTLTINNVQS-EDLAE 85 (107)
T ss_dssp CCSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCG-GGCSE
T ss_pred CCCeEEECCCCCEEEEEEeCCCCCCceEEEeccCCcccEEEEEeccccccccCCCeeecCCCCeeeeeechhhe-eccee
Confidence 345678899999999999765555578999731 11 0123567777777788999999999 99999
Q ss_pred EEEEEEc
Q psy7039 427 YTIQLVN 433 (516)
Q Consensus 427 y~c~a~n 433 (516)
|.|.+..
T Consensus 86 YyCa~~~ 92 (107)
T d1mexl1 86 YFCQQYN 92 (107)
T ss_dssp EEEEECS
T ss_pred EEEeECC
Confidence 9998654
|
| >d3cx5k1 b.1.1.1 (K:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=97.59 E-value=5.2e-05 Score=57.64 Aligned_cols=72 Identities=11% Similarity=0.086 Sum_probs=49.0
Q ss_pred CcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEee--CCee------------eccC
Q psy7039 119 STLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSI--NGQV------------CQIG 184 (516)
Q Consensus 119 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~--~~~~------------~~~~ 184 (516)
..|..+.+.+|++++|.|... ......+.|++ .+.. ....
T Consensus 6 QsP~s~~~~~G~~vtl~C~~s--------------------------~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~ 59 (107)
T d3cx5k1 6 QTPVSLAASLGDRVTISCRAS--------------------------QDINNFLNWYQQKPDGTIKLLIYYTSRLHAGVP 59 (107)
T ss_dssp EESTTCCBCSSSCCEEEEEES--------------------------SCCTTCEEEEEECTTSCEEEEEETTTEECTTCC
T ss_pred CcCCEEEECCCCCEEEEEEcC--------------------------CCcCCCeEEEEcCCCCcceEEEEeecccCCCcC
Confidence 345567789999999999876 33333455554 1111 1112
Q ss_pred CceEEeecCCeeEEEeccCCCCCCeeEEEEEE
Q psy7039 185 GRADVQTTKSETVLDIPFCSRSDTGHYSLTLE 216 (516)
Q Consensus 185 ~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~ 216 (516)
.++.....+....|.|.+++.+|+|.|.|...
T Consensus 60 ~~f~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~ 91 (107)
T d3cx5k1 60 SRFSGSGSGTDYSLTISNLEPEDIATYFCQHH 91 (107)
T ss_dssp TTCCCEEETTEEEEECSCCCSCCCSEEEEEEC
T ss_pred CCEEEEccCCEEEEEEeEeeecCCCcEEeeeC
Confidence 45555556667899999999999999999754
|
| >d1xeda_ b.1.1.1 (A:) Polymeric-immunoglobulin receptor, PIGR {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Polymeric-immunoglobulin receptor, PIGR species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.58 E-value=8.9e-05 Score=57.29 Aligned_cols=87 Identities=16% Similarity=0.242 Sum_probs=57.3
Q ss_pred cccEEEEcCCeEEEEEEEeeec---CCceEEEECCee--------------cCCCCceEE--EEcCCeEEEEEcCceecC
Q psy7039 362 IRDMTVLAGEEFTITVPFSGRP---KPTPIWTVNGDE--------------VSPDGRIKF--ETSENQTIYRNKSAKRAT 422 (516)
Q Consensus 362 ~~~~~v~~g~~~~l~C~~~g~p---~~~i~W~~~~~~--------------l~~~~~~~~--~~~~~~~~l~i~~~~~~~ 422 (516)
++.+.+.+|+.++|.|...... ...+.|++.... .....++.+ .......+|+|.++.. .
T Consensus 6 P~~V~~~~G~svtL~C~y~~~~~~~~~~~~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~l~~-~ 84 (116)
T d1xeda_ 6 PEEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLSQ-D 84 (116)
T ss_dssp CSEEEEETTCCEEEEEECCCCHHHHHSCEEEEEC-----CEEEEESSSCBCTTTTTTEEEEEETTTTEEEEEECSCCG-G
T ss_pred CCEEEEcCCCCEEEEEEECCCCCccceeEEEEEcCCCCCcEEEEECcccccceecCCccEeeeCCCCEEEEEEhhhCc-C
Confidence 5678889999999999975332 235788763210 011233333 3344557899999999 9
Q ss_pred CceEEEEEEEcCCCceeEEEEEEEecC
Q psy7039 423 DSGSYTIQLVNTVGSDSASCKVYVVDK 449 (516)
Q Consensus 423 ~~g~y~c~a~n~~G~~s~s~~l~v~~~ 449 (516)
|+|.|.|.+............|+|...
T Consensus 85 DsG~Y~C~v~~~~~~~~~~v~L~V~~~ 111 (116)
T d1xeda_ 85 DSGRYKCGLGINSRGLSFDVSLEVLEH 111 (116)
T ss_dssp GCEEEEEEESCGGGCCEEEEEEEEECC
T ss_pred CCEEEEEEEEcCCCCceEeEEEEEECC
Confidence 999999988654433445577777653
|
| >d1bwwa_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Human (Homo sapiens), cluster 1 [TaxId: 9606]
Probab=97.58 E-value=9e-05 Score=56.49 Aligned_cols=85 Identities=7% Similarity=0.061 Sum_probs=51.7
Q ss_pred CcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecC-cCcee-eEEeeCCeeeccCCceEEeecCCee
Q psy7039 119 STLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLS-EPFLN-HGWSINGQVCQIGGRADVQTTKSET 196 (516)
Q Consensus 119 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~p~~~-i~W~~~~~~~~~~~~~~~~~~~~~~ 196 (516)
..|..+.+.+|++++|.|...+ . ....+-|++.- ...+. +.+...........++.....+...
T Consensus 8 QsP~~l~~~~G~svtL~C~~s~-------------~-~~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~fs~~~~~~~~ 73 (109)
T d1bwwa_ 8 QSPSSLSASVGDRVTITCQASQ-------------D-IIKYLNWYQQKPGKAPKLLIYEASNLQAGVPSRFSGSGSGTDY 73 (109)
T ss_dssp EECSEEEECTTCCEEEEEEESS-------------C-CTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEE
T ss_pred eeCCEEEECCCCCEEEEEEecC-------------C-CCCcceEeeeccCCCCEEEEEecccCCCCCCCCEEeeCCCCEe
Confidence 3456788999999999998871 0 01123344321 11111 1111111111223567666667778
Q ss_pred EEEeccCCCCCCeeEEEEEEc
Q psy7039 197 VLDIPFCSRSDTGHYSLTLEN 217 (516)
Q Consensus 197 ~l~i~~~~~~d~g~Y~c~~~~ 217 (516)
.|.|.+++.+|+|.|.|.+..
T Consensus 74 ~L~I~~l~~~Dsa~YyCA~~~ 94 (109)
T d1bwwa_ 74 TFTISSLQPEDIATYYCQQYQ 94 (109)
T ss_dssp EEEESSCCGGGCEEEEEEECS
T ss_pred EEEEeeceeCcCceEEEeecC
Confidence 999999999999999998643
|
| >d1olla1 b.1.1.4 (A:1-95) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Ligand binding domain of NK receptor NKp46 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.57 E-value=4.9e-05 Score=56.35 Aligned_cols=76 Identities=11% Similarity=0.083 Sum_probs=50.7
Q ss_pred CCccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEeec
Q psy7039 113 APRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTT 192 (516)
Q Consensus 113 ~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~ 192 (516)
+|.|. ..+. -.|..|+.++|.|... .....+.|++++.......+ .....
T Consensus 4 KPsLs-a~P~-~~V~~G~~VTL~C~~~---------------------------~~~~~f~L~k~g~~~~~~~~-~~~~~ 53 (95)
T d1olla1 4 KPFIW-AEPH-FMVPKEKQVTICCQGN---------------------------YGAVEYQLHFEGSLFAVDRP-KPPER 53 (95)
T ss_dssp CCEEE-EESC-SEEETTCCEEEEEECC---------------------------TTCCEEEEEETTEEEEEECC-SSCTT
T ss_pred CCEEE-eeCC-CcccCCCcEEEEEecC---------------------------CCccEEEEEECCCCcceeEE-ccCCC
Confidence 45554 2333 3477999999999875 34567888887754321110 01112
Q ss_pred CCeeEEEeccCCCCCCeeEEEEEEcC
Q psy7039 193 KSETVLDIPFCSRSDTGHYSLTLENN 218 (516)
Q Consensus 193 ~~~~~l~i~~~~~~d~g~Y~c~~~~~ 218 (516)
+....+.|.+++..|+|.|+|.+.+.
T Consensus 54 ~~~a~F~i~~v~~~~~G~Y~C~y~~~ 79 (95)
T d1olla1 54 INKVKFYIPDMNSRMAGQYSCIYRVG 79 (95)
T ss_dssp CCEEEEEESSCCGGGCEEEEEEEEET
T ss_pred ccEEEEEEeeeecCCCceEEEEeCCC
Confidence 34568999999999999999998753
|
| >d1ucta1 b.1.1.4 (A:2-100) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Ig alpha Fc receptor, FCARI (CD89) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.57 E-value=4.8e-05 Score=57.00 Aligned_cols=82 Identities=10% Similarity=-0.056 Sum_probs=51.5
Q ss_pred ccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCc-eEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCce--e
Q psy7039 363 RDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGR-IKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSD--S 439 (516)
Q Consensus 363 ~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~-~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~--s 439 (516)
....+..|++++|.|... .+...+.|++++........ ...........+.|.++.. .|+|.|+|...+..+.. +
T Consensus 14 P~~~V~~G~~VTL~C~~~-~~~~~f~l~k~g~~~~~~~~~~~~~~~~~~a~F~l~~vt~-~~~G~Y~C~y~~~~~~S~~S 91 (99)
T d1ucta1 14 SSPVIPLDGSVKIQCQAI-REAYLTQLMIIKNSTYREIGRRLKFWNETDPEFVIDHMDA-NKAGRYQCQYRIGHYRFRYS 91 (99)
T ss_dssp SCSEEETTCCEEEEECCC-TTCSEEEEEEEETTEEEECSEECC----CCCEEEECSCCG-GGCEEEEEEEEETTTEEEEC
T ss_pred CCCceeCCCeEEEEEcCC-CCCcEEEEEECCCcCceeccccccCCCCceEEEEecCCCH-HHCceEEEEEECCCcccCCC
Confidence 344688999999999864 23447888887642111100 0011122334689999999 99999999998876543 3
Q ss_pred EEEEEEE
Q psy7039 440 ASCKVYV 446 (516)
Q Consensus 440 ~s~~l~v 446 (516)
....|.|
T Consensus 92 dpl~L~V 98 (99)
T d1ucta1 92 DTLELVV 98 (99)
T ss_dssp CCEEEEE
T ss_pred CCEEEEe
Confidence 3345544
|
| >d2rhea_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain lambda variable domain, VL-lambda species: Human (Homo sapiens), cluster 2 [TaxId: 9606]
Probab=97.57 E-value=0.00037 Score=53.26 Aligned_cols=87 Identities=16% Similarity=0.178 Sum_probs=60.0
Q ss_pred ccEEEEcCCeEEEEEEEeeec--CCceEEEECCe--------------ecCCCCceEEEEcCCeEEEEEcCceecCCceE
Q psy7039 363 RDMTVLAGEEFTITVPFSGRP--KPTPIWTVNGD--------------EVSPDGRIKFETSENQTIYRNKSAKRATDSGS 426 (516)
Q Consensus 363 ~~~~v~~g~~~~l~C~~~g~p--~~~i~W~~~~~--------------~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~ 426 (516)
..+.+.+|+.++|.|.+.+.. ...+.|++... .-....++..........|.|.++.. +|++.
T Consensus 8 ps~~v~~G~svtL~C~~s~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~-~DsA~ 86 (114)
T d2rhea_ 8 PSASGTPGQRVTISCTGSATDIGSNSVIWYQQVPGKAPKLLIYYNDLLPSGVSDRFSASKSGTSASLAISGLES-EDEAD 86 (114)
T ss_dssp SEEEECTTCCEEEEEECCTTTTTTSCEEEEECCTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEESSCCG-GGCEE
T ss_pred CcEEeCCCCCEEEEEEECCccccCCcccceeeecccceEEEEEEeeeeccCCCCcceecCCCCeeeeEecccCc-ccCce
Confidence 357888999999999986543 34688997321 01123467777677788999999999 99999
Q ss_pred EEEEEEcCCCce---eEEEEEEEecCC
Q psy7039 427 YTIQLVNTVGSD---SASCKVYVVDKP 450 (516)
Q Consensus 427 y~c~a~n~~G~~---s~s~~l~v~~~p 450 (516)
|.|.+....... ..-..|+|...|
T Consensus 87 YyCA~~~~~~~~~~FG~GT~LtVlg~p 113 (114)
T d2rhea_ 87 YYCAAWNDSLDEPGFGGGTKLTVLGQP 113 (114)
T ss_dssp EEEEEEETTTTEEEECCCEEEEECSCC
T ss_pred EEEeecCCCCCCCEECCCeEEEECCCc
Confidence 999886432211 112467776544
|
| >d1nfde1 b.1.1.1 (E:2-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain lambda variable domain, VL-lambda species: Hamster (Cricetulus griseus) [TaxId: 10029]
Probab=97.57 E-value=9.2e-05 Score=56.25 Aligned_cols=83 Identities=11% Similarity=0.097 Sum_probs=53.1
Q ss_pred ccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecC-cCceeeEEeeCCe-eeccCCceEEeecCCeeEE
Q psy7039 121 LNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLS-EPFLNHGWSINGQ-VCQIGGRADVQTTKSETVL 198 (516)
Q Consensus 121 ~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~p~~~i~W~~~~~-~~~~~~~~~~~~~~~~~~l 198 (516)
|..+.+.+|++++|.|...+ -....+.|++.. ...+.+.++.... .-....|+..........|
T Consensus 6 P~s~~~~~G~svtl~C~~~~--------------~~~~~i~WYrQ~~g~~p~~l~y~~~~~~~~~~~rf~~~~~~~~~~L 71 (108)
T d1nfde1 6 PSSASVTVGETVKITCSGDQ--------------LPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTSGTTATL 71 (108)
T ss_dssp CSEEEEETTSCCCEEEEETT--------------GGGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEEETTEEEE
T ss_pred CCeeEECCCCCEEEEEECCC--------------CCCccEEEEecccccceeeeccccccccccccceeeecCCCCEeee
Confidence 45688899999999998751 112235566532 1122322222211 1112356777767777899
Q ss_pred EeccCCCCCCeeEEEEEEc
Q psy7039 199 DIPFCSRSDTGHYSLTLEN 217 (516)
Q Consensus 199 ~i~~~~~~d~g~Y~c~~~~ 217 (516)
.|.+++.+|+|.|.|.+..
T Consensus 72 ~I~~l~~~Dsa~YyCA~~~ 90 (108)
T d1nfde1 72 TISGAQPEDEAAYYCLSSY 90 (108)
T ss_dssp EETTCCGGGCSEEEEEEEE
T ss_pred eEcCccccCCceEEEEeec
Confidence 9999999999999998753
|
| >d1sq2n_ b.1.1.1 (N:) Novel antigen receptor (against lysozyme) {Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Novel antigen receptor (against lysozyme) species: Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]
Probab=97.56 E-value=0.00013 Score=55.79 Aligned_cols=76 Identities=21% Similarity=0.206 Sum_probs=50.8
Q ss_pred CcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeC--C----eeeccCCceEEee-
Q psy7039 119 STLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSIN--G----QVCQIGGRADVQT- 191 (516)
Q Consensus 119 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~--~----~~~~~~~~~~~~~- 191 (516)
..|..+.+.+|+.++|.|...+ . ......+.|++. + ..+....++....
T Consensus 4 Q~P~s~t~~~G~svtl~C~~s~-~-----------------------s~~~~~i~WYrq~~g~~~~~~~~~~gr~~~~~~ 59 (112)
T d1sq2n_ 4 QTPRSVTKETGESLTINCVLRD-A-----------------------SYALGSTCWYRKKSGEGNEESISKGGRYVETVN 59 (112)
T ss_dssp EECSEEEECTTCCEEEEEEECS-C-----------------------SSCCCCEEEEEEETTSCCCEECCCBTTEEEEEE
T ss_pred ecCCEEEEcCCCCEEEEEEECC-C-----------------------cccCCceEEEEeeccceeeeeeccCCcEeeEEe
Confidence 4456788899999999998761 0 123456778871 2 1222334554432
Q ss_pred -cCCeeEEEeccCCCCCCeeEEEEEEcC
Q psy7039 192 -TKSETVLDIPFCSRSDTGHYSLTLENN 218 (516)
Q Consensus 192 -~~~~~~l~i~~~~~~d~g~Y~c~~~~~ 218 (516)
......|.|.+++.+|+|.|.|.+...
T Consensus 60 ~~~~~~~L~I~~l~~~Dsa~YyCA~~~~ 87 (112)
T d1sq2n_ 60 SGSKSFSLRINDLTVEDGGTYRCGLGVA 87 (112)
T ss_dssp TTTTEEEEEECSCCGGGCEEEEEEECBT
T ss_pred cCCceeeeEecCCcCccCEEEeEEEecC
Confidence 233568999999999999999987543
|
| >d1wk0a_ b.1.2.1 (A:) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.56 E-value=0.00012 Score=58.38 Aligned_cols=105 Identities=11% Similarity=0.040 Sum_probs=65.0
Q ss_pred CCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeeecCCceEEEECCeecC
Q psy7039 318 PGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVS 397 (516)
Q Consensus 318 p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~ 397 (516)
+..+.. ..+..++.+++.|+|.+|...++..+.+|.... .... .+.|...+.
T Consensus 18 ~~~~~~-P~V~~v~~~sv~l~W~~P~~~~~~~~~~~~~~~------------~~~y------------~v~~~~~~~--- 69 (137)
T d1wk0a_ 18 LSNIVK-PVASDIQARTVVLTWSPPSSLINGETDESSVPE------------LYGY------------EVLISSTGK--- 69 (137)
T ss_dssp TTCCCC-CEEESCCSSCEEEECCCCCCCSTTSSCSSCSCS------------CCEE------------EEEECSSCT---
T ss_pred CCCCCC-CEEEEeEcCEEEEEEeCcCcCCCceeeccccce------------EEee------------EEEEeeCCC---
Confidence 333334 467888999999999999888777666652110 0000 112221111
Q ss_pred CCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEEEEecCCCC
Q psy7039 398 PDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSP 452 (516)
Q Consensus 398 ~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~v~~~p~~ 452 (516)
...+..........++|.+|.+ ...|.|++.|.|..|.+..+..+.+++.+.+
T Consensus 70 -~~~~~~~~~~~~~~~~i~~L~P-~t~Y~f~V~A~n~~G~g~~S~~~~~~T~~~~ 122 (137)
T d1wk0a_ 70 -DGKYKSVYVGEETNITLNDLKP-AMDYHAKVQAEYNSIKGTPSEAEIFTTLSCE 122 (137)
T ss_dssp -TSCCEEEEEESCSEEEECSCCT-TCEECEEEEEEETTEECCCCCCCCEECCCSS
T ss_pred -CccEEEEEecCccEEEECCCCC-CcEEEEEEEEEcCCcccCCCCCEEEECCCCC
Confidence 1222222333445789999999 9999999999999998665555555554433
|
| >d1x5ha1 b.1.2.1 (A:8-126) Neogenin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Neogenin species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.56 E-value=0.00011 Score=57.10 Aligned_cols=90 Identities=13% Similarity=0.157 Sum_probs=57.8
Q ss_pred ceeeeccCCeeEEEecCCCC-CCCCceeeccccccccccccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceE
Q psy7039 325 IDYTTVTPESVSMSWKPPVD-DGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIK 403 (516)
Q Consensus 325 ~~~~~~~~~~~~l~W~~p~~-~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~ 403 (516)
+.+...+.+++.|+|++|.. ..+..|.+|. |.|...+..- ....
T Consensus 18 v~~~~~~~~si~v~W~~p~~~~~ng~i~~Y~--------------------------------v~y~~~~~~~---~~~~ 62 (119)
T d1x5ha1 18 LSLEVRNSKSIMIHWQPPAPATQNGQITGYK--------------------------------IRYRKASRKS---DVTE 62 (119)
T ss_dssp EEEECCSSSEEEEEEECCCTTTCCSCEEEEB--------------------------------CEEEETTEEE---EEEC
T ss_pred eEEEEecCcEEEEEEEcccccCCCCCEEEEE--------------------------------EEEeeccccc---ceee
Confidence 77778899999999998753 2223677772 1221111100 0000
Q ss_pred EEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEEEEecCC
Q psy7039 404 FETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKP 450 (516)
Q Consensus 404 ~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~v~~~p 450 (516)
.........+.|.+|.+ +..|.+++.|.|..|.+..+..+.+++.+
T Consensus 63 ~~~~~~~~~~~i~~L~p-~t~Y~~~V~A~n~~G~G~~S~~~~~~T~~ 108 (119)
T d1x5ha1 63 TLVSGTQLSQLIEGLDR-GTEYNFRVAALTINGTGPATDWLSAETFE 108 (119)
T ss_dssp CBCCTTCCEEEEECCCS-SCEEEEECEEEETTEEEEECCCEEEECCS
T ss_pred eecCCCccEEEeCCCCC-CCEEEEEEEEEcCCcCCCCCCCEEEEeCC
Confidence 01122345688999999 99999999999999987776666666543
|
| >d1jhll_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=97.55 E-value=0.00028 Score=53.39 Aligned_cols=72 Identities=18% Similarity=0.099 Sum_probs=53.4
Q ss_pred cccEEEEcCCeEEEEEEEeeecCCceEEEECCe--e------------cCCCCceEEEEcCCeEEEEEcCceecCCceEE
Q psy7039 362 IRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGD--E------------VSPDGRIKFETSENQTIYRNKSAKRATDSGSY 427 (516)
Q Consensus 362 ~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~--~------------l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y 427 (516)
+..+.+.+|+.+.|.|.........+.|++... . ......+....+.....|+|.++.+ +|++.|
T Consensus 8 P~~l~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~l~~-~Dsa~Y 86 (108)
T d1jhll_ 8 PSYLVASPGETITINCRASKSISKSLAWYQEKPGKTNNLLIYSGSTLQSGIPSRFSGSGSGTDFTLTISSLEP-EDFAMY 86 (108)
T ss_dssp CSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEESSSEEEEEECSCCT-TCCSEE
T ss_pred CCeEEecCCCCEEEEEEccCCcCCceEEEEccccCCCeEEEEeeccccCCccccccccCCCCEEEeEeeeeEe-ccceEE
Confidence 456778999999999998765555789987311 0 0123456666667778899999999 999999
Q ss_pred EEEEEcC
Q psy7039 428 TIQLVNT 434 (516)
Q Consensus 428 ~c~a~n~ 434 (516)
.|.+.+.
T Consensus 87 yCA~~~~ 93 (108)
T d1jhll_ 87 ICQQHNE 93 (108)
T ss_dssp EEEECSS
T ss_pred EEeeCCC
Confidence 9976654
|
| >d1tvda_ b.1.1.1 (A:) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), delta-chain [TaxId: 9606]
Probab=97.55 E-value=0.00016 Score=55.83 Aligned_cols=88 Identities=16% Similarity=0.134 Sum_probs=52.7
Q ss_pred CcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeec--CcCceeeEEeeCCeeec---cCCceEEee--
Q psy7039 119 STLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKL--SEPFLNHGWSINGQVCQ---IGGRADVQT-- 191 (516)
Q Consensus 119 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~~~i~W~~~~~~~~---~~~~~~~~~-- 191 (516)
..+..+.+.+|++++|.|.... ...+..+-|++. +.....+.+......-. ...|+.+..
T Consensus 5 Q~p~~~~~~~G~~vtL~C~~~~-------------~~~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~rf~~~~~~ 71 (116)
T d1tvda_ 5 QSSPDQTVASGSEVVLLCTYDT-------------VYSNPDLFWYRIRPDYSFQFVFYGDDSRSEGADFTQGRFSVKHIL 71 (116)
T ss_dssp CCSCCEEEETTCCEEECCEEEC-------------CSSSCCEEEEEECTTSCEEEEEEECSSCEEECGGGTTTEEEEEEG
T ss_pred ccCCCEEEcCCCCEEEEEEEcC-------------CccCCcEEEEEeCCCCceEEeeecccccccccCccceEEEEEecC
Confidence 4456688999999999998861 122334556543 11111122221111111 224665543
Q ss_pred cCCeeEEEeccCCCCCCeeEEEEEEcCC
Q psy7039 192 TKSETVLDIPFCSRSDTGHYSLTLENNL 219 (516)
Q Consensus 192 ~~~~~~l~i~~~~~~d~g~Y~c~~~~~~ 219 (516)
.....+|.|.+++.+|+|.|.|......
T Consensus 72 ~~~~~~L~I~~~~~~Dsg~YyCa~~~~~ 99 (116)
T d1tvda_ 72 TQKAFHLVISPVRTEDSATYYCAFTLPP 99 (116)
T ss_dssp GGTEEEEEESSCCGGGCEEEEEEEECTT
T ss_pred ceeEEeeeecCccccccccceeeEecCC
Confidence 3345689999999999999999876543
|
| >d1lgva1 b.1.1.1 (A:1-112) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 4 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain lambda variable domain, VL-lambda species: Human (Homo sapiens), cluster 4 [TaxId: 9606]
Probab=97.55 E-value=0.00016 Score=55.31 Aligned_cols=85 Identities=14% Similarity=0.152 Sum_probs=50.6
Q ss_pred ccceEEecCCeEEEEEeeeeccccccCcccccccc-ccCccceeecCcCceeeEEe---eCCeeeccCCceEEeecCCee
Q psy7039 121 LNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVR-ANSTKGWVKLSEPFLNHGWS---INGQVCQIGGRADVQTTKSET 196 (516)
Q Consensus 121 ~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~p~~~i~W~---~~~~~~~~~~~~~~~~~~~~~ 196 (516)
|..+.+.+|++++|.|...+ ... ....+.|++.. |.....|. ..........++.........
T Consensus 7 P~s~~~~~G~svtl~C~~~~------------~~~~~~~~i~WYrQ~-pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 73 (112)
T d1lgva1 7 PASVSGSPGQSITVSCTGVS------------SIVGSYNLVSWYQQH-PGKAPKLLTYEVNKRPSGVSDRFSGSKSGNSA 73 (112)
T ss_dssp CSEEEECTTCCEEEEEECCC------------CSSSCCCCEEEEEEC-TTSCCEEEEBTTTBCCTTSCTTEEEEEETTEE
T ss_pred CCcEEECCCCCEEEEEEeCC------------CCCCCCCcceeeeee-ecccceeeeeeeccccCCCcccEEEECCCCEe
Confidence 55788999999999998761 000 01123344321 11111111 111111223566666666788
Q ss_pred EEEeccCCCCCCeeEEEEEEcC
Q psy7039 197 VLDIPFCSRSDTGHYSLTLENN 218 (516)
Q Consensus 197 ~l~i~~~~~~d~g~Y~c~~~~~ 218 (516)
.|.|.+++.+|+|.|.|.+...
T Consensus 74 ~L~I~~l~~~Dsa~YyCa~~~~ 95 (112)
T d1lgva1 74 SLTISGLQAEDEADYYCSSYDG 95 (112)
T ss_dssp EEEECSCCGGGCEEEEEEEECS
T ss_pred eEEeCcCccccCEEEEEeeecC
Confidence 9999999999999999987653
|
| >d1u3ha1 b.1.1.1 (A:2-116) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]
Probab=97.54 E-value=0.00015 Score=55.40 Aligned_cols=73 Identities=14% Similarity=0.193 Sum_probs=47.7
Q ss_pred CcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeC--Cee------------eccC
Q psy7039 119 STLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSIN--GQV------------CQIG 184 (516)
Q Consensus 119 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~--~~~------------~~~~ 184 (516)
..|..+.+.+|++++|.|... ......+.|++- +.. ....
T Consensus 4 Q~P~~~~~~~G~~vtl~C~~~--------------------------~~~~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~ 57 (110)
T d1u3ha1 4 QSPQSLTVWEGETAILNCSYE--------------------------NSAFDYFPWYQQFPGEGPALLISILSVSDKKED 57 (110)
T ss_dssp CSCSSEEEETTSCEEEEEEEC--------------------------CTTEEEEEEEEECTTSCCEEEEEEETTCSEEEE
T ss_pred ecCCEEEEcCCCCEEEEEEec--------------------------CCCCcEEEEEeeccccceeeeeeeccccccccc
Confidence 345568889999999999887 333334556541 111 1112
Q ss_pred CceEEe--ecCCeeEEEeccCCCCCCeeEEEEEEc
Q psy7039 185 GRADVQ--TTKSETVLDIPFCSRSDTGHYSLTLEN 217 (516)
Q Consensus 185 ~~~~~~--~~~~~~~l~i~~~~~~d~g~Y~c~~~~ 217 (516)
.+.... ..+....|.|.+++.+|+|.|.|.+..
T Consensus 58 ~~~~~~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~~ 92 (110)
T d1u3ha1 58 GRFTIFFNKREKKLSLHIADSQPGDSATYFCAASA 92 (110)
T ss_dssp TTEEEEEETGGGEEEEEESSCCTTSCSEEEECCEE
T ss_pred cceeEEECCCCCeeEeEeccCCCCCceeEeeeecC
Confidence 233222 344567899999999999999998653
|
| >d1j8hd1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), alpha-chain [TaxId: 9606]
Probab=97.54 E-value=9.9e-05 Score=56.91 Aligned_cols=74 Identities=12% Similarity=0.084 Sum_probs=48.4
Q ss_pred CcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEee--CC-------------eeecc
Q psy7039 119 STLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSI--NG-------------QVCQI 183 (516)
Q Consensus 119 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~--~~-------------~~~~~ 183 (516)
..+..+.+.+|+.++|.|... ......+.|++ ++ .....
T Consensus 5 Q~p~~v~~~~G~~vtl~C~~s--------------------------~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~ 58 (115)
T d1j8hd1 5 QLGSHVSVSEGALVLLRCNYS--------------------------SSVPPYLFWYVQYPNQGLQLLLKYTSAATLVKG 58 (115)
T ss_dssp CSCSEEEEETTSCEEECCEEE--------------------------CSSCCEEEEEEECTTSCCEEEEEECSSCSEEEC
T ss_pred cCCCeEEEcCCCCEEEEEEeC--------------------------CCCceeEEEEEccCCCcceeeeEEeeccccccc
Confidence 445668899999999999987 33333455554 11 11111
Q ss_pred CCceEEee--cCCeeEEEeccCCCCCCeeEEEEEEcC
Q psy7039 184 GGRADVQT--TKSETVLDIPFCSRSDTGHYSLTLENN 218 (516)
Q Consensus 184 ~~~~~~~~--~~~~~~l~i~~~~~~d~g~Y~c~~~~~ 218 (516)
..++.... ......|.|.+++.+|+|.|.|.+...
T Consensus 59 ~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~~~ 95 (115)
T d1j8hd1 59 INGFEAEFKKSETSFHLTKPSAHMSDAAEYFCAVSES 95 (115)
T ss_dssp GGGCEEECBGGGTBCCEEESSCCGGGCEEEEEEEESS
T ss_pred CCCCEEEECCCCCEEEEeeccccccCCccceeeecCC
Confidence 23343332 233457999999999999999998754
|
| >d1k85a_ b.1.2.1 (A:) Fibronectin type III domain from chitinase A1. {Bacillus circulans [TaxId: 1397]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin type III domain from chitinase A1. species: Bacillus circulans [TaxId: 1397]
Probab=97.53 E-value=0.00017 Score=52.53 Aligned_cols=76 Identities=25% Similarity=0.355 Sum_probs=51.2
Q ss_pred ceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEE
Q psy7039 325 IDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKF 404 (516)
Q Consensus 325 ~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~ 404 (516)
+.+..++.+++.|+|.+|.++++ +.+|. +..+ +. ...
T Consensus 10 l~~~~~~~~sv~lsW~~p~~~~~--i~~Y~------------i~~~----------------------~~-------~~~ 46 (88)
T d1k85a_ 10 LASTAQTTSSITLSWTASTDNVG--VTGYD------------VYNG----------------------TA-------LAT 46 (88)
T ss_dssp EEEEEECSSCEEEEEECCSCCSS--EEEEE------------EEES----------------------SS-------EEE
T ss_pred cEEEEecCCEEEEEEeCCCCCCC--EEEEE------------EEcc----------------------ce-------EEE
Confidence 78888899999999999876543 55652 1111 10 001
Q ss_pred EEcCCeEEEEEcCceecCCceEEEEEEEcCCCc-eeEEEEEEE
Q psy7039 405 ETSENQTIYRNKSAKRATDSGSYTIQLVNTVGS-DSASCKVYV 446 (516)
Q Consensus 405 ~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~-~s~s~~l~v 446 (516)
. ...+++++.+|.+ ...|.|+++|.|..|. +..+..+.+
T Consensus 47 ~--~~~t~~~~~~L~p-~t~Y~~~V~A~n~~G~~s~~S~~v~v 86 (88)
T d1k85a_ 47 T--VTGTTATISGLAA-DTSYTFTVKAKDAAGNVSAASNAVSV 86 (88)
T ss_dssp E--ESSSEEEECCCCS-SCEEEEEEEEEETTTEECCCCCCEEE
T ss_pred e--cCCCEEEECCCCC-CCEEEEEEEEEECCCCcCCCCcCEEE
Confidence 1 1224688999999 9999999999999994 444444443
|
| >d2ak4d1 b.1.1.1 (D:1-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), alpha-chain [TaxId: 9606]
Probab=97.53 E-value=0.00021 Score=54.84 Aligned_cols=88 Identities=15% Similarity=0.083 Sum_probs=49.2
Q ss_pred CcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCc-CceeeEEee-CC-eeeccCCceE--EeecC
Q psy7039 119 STLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSE-PFLNHGWSI-NG-QVCQIGGRAD--VQTTK 193 (516)
Q Consensus 119 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~i~W~~-~~-~~~~~~~~~~--~~~~~ 193 (516)
..+..+.+.+|++++|.|.... ...+..+.|++... ..+.+..+. .. .......+.. ....+
T Consensus 5 Q~~~~v~v~~G~~VtL~C~~~~-------------~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 71 (114)
T d2ak4d1 5 QAQTEISVVEKEDVTLDCVYET-------------RDTTYYLFWYKQPPSGELVFLIRRNSFDEQNEISGRYSWNFQKST 71 (114)
T ss_dssp CCCCEEEEETTCCEEECCEEEC-------------SCSSCEEEEEEECTTCCCEEEEEEETTSCSEEEETTEEEEEETTT
T ss_pred ecCCeEEEeCCCCEEEEEEEcC-------------CCcCccEEEEEccccCcceEeeeEeeeeecCCCCcceEEEEcCCC
Confidence 4456688999999999998761 11111234444211 111111111 10 1101112333 33345
Q ss_pred CeeEEEeccCCCCCCeeEEEEEEcCC
Q psy7039 194 SETVLDIPFCSRSDTGHYSLTLENNL 219 (516)
Q Consensus 194 ~~~~l~i~~~~~~d~g~Y~c~~~~~~ 219 (516)
....|.|.+++.+|+|.|.|.+....
T Consensus 72 ~~~~L~I~~~~~~Dsg~YyCa~~~~~ 97 (114)
T d2ak4d1 72 SSFNFTITASQVVDSAVYFCALSGFY 97 (114)
T ss_dssp TEEEEEESSCCGGGCEEEEEEEECSB
T ss_pred CEEEEeecccccccCCCceEeCCCCC
Confidence 56799999999999999999876543
|
| >d1oaql_ b.1.1.1 (L:) Immunoglobulin light chain lambda variable domain, VL-lambda {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain lambda variable domain, VL-lambda species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.52 E-value=0.00015 Score=55.16 Aligned_cols=84 Identities=12% Similarity=0.147 Sum_probs=50.8
Q ss_pred cceEEecCCeEEEEEeeeeccccccCcccccccc-ccCccceeecCc-CceeeEEeeCCe-eeccCCceEEeecCCeeEE
Q psy7039 122 NDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVR-ANSTKGWVKLSE-PFLNHGWSINGQ-VCQIGGRADVQTTKSETVL 198 (516)
Q Consensus 122 ~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-p~~~i~W~~~~~-~~~~~~~~~~~~~~~~~~l 198 (516)
..+.+.+|++++|.|..+. +.. ...-+.|+.... ..+.+.-+.... .-....|+.....+....|
T Consensus 8 ~slsvs~G~tvtl~C~~s~------------~~~~~~~~v~WyrQ~pg~~p~~l~y~~~~~~~~~~~rf~~s~~~~~~~L 75 (110)
T d1oaql_ 8 SALTTSPGETVTLTCRSST------------GAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGNKAAL 75 (110)
T ss_dssp SEEEECTTCEEEEEEEETT------------BCCCGGGCCEEEEEETTTEEEEEEETTTEECTTSCTTEEEEEETTEEEE
T ss_pred CCEEeCCCCCEEEEEEEcC------------CCCcceeeeEEEEeecccceeeeeeeeceeccccceeeeecccccceee
Confidence 3578999999999998861 000 111144554321 112111111111 1112357777667778899
Q ss_pred EeccCCCCCCeeEEEEEEc
Q psy7039 199 DIPFCSRSDTGHYSLTLEN 217 (516)
Q Consensus 199 ~i~~~~~~d~g~Y~c~~~~ 217 (516)
.|.+++.+|+|.|.|....
T Consensus 76 ~I~~~~~~Dsa~YyCa~~~ 94 (110)
T d1oaql_ 76 TITGAQTEDEAIYFCALWY 94 (110)
T ss_dssp EEESCCGGGCEEEEEEEEE
T ss_pred ecCCCCccccEeEEEEccc
Confidence 9999999999999998653
|
| >d1op3k1 b.1.1.1 (K:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Engineered (including hybrid species)
Probab=97.52 E-value=0.00022 Score=53.87 Aligned_cols=71 Identities=15% Similarity=0.109 Sum_probs=54.4
Q ss_pred cccEEEEcCCeEEEEEEEeeecCCceEEEECCe--------------ecCCCCceEEEEcCCeEEEEEcCceecCCceEE
Q psy7039 362 IRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGD--------------EVSPDGRIKFETSENQTIYRNKSAKRATDSGSY 427 (516)
Q Consensus 362 ~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~--------------~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y 427 (516)
+..+.+.+|+.++|.|.........+.|++... .-....++..........|.|.++.+ +|++.|
T Consensus 7 P~sl~~~~G~svtL~C~~~~~~~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~-~Dsa~Y 85 (106)
T d1op3k1 7 PSTLSASVGDTITITCRASQSIETWLAWYQQKPGKAPKLLIYKASTLKTGVPSRFSGSGSGTEFTLTISGLQF-DDFATY 85 (106)
T ss_dssp CSEEEECTTCEEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEEESCCG-GGCSEE
T ss_pred CCeEEECCCCCEEEEEEeCCCCCCcEEEEecCCCCCCEEEEEccccCCCCcCCceeeeccCCEEEEEEccccc-cCCCcE
Confidence 456788999999999998765555789987421 01123467777777778999999999 999999
Q ss_pred EEEEEc
Q psy7039 428 TIQLVN 433 (516)
Q Consensus 428 ~c~a~n 433 (516)
.|.+..
T Consensus 86 yCa~~~ 91 (106)
T d1op3k1 86 HCQHYA 91 (106)
T ss_dssp EEEEEC
T ss_pred eeeeCC
Confidence 998764
|
| >d1d5il1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=97.52 E-value=0.00032 Score=53.01 Aligned_cols=72 Identities=19% Similarity=0.097 Sum_probs=54.3
Q ss_pred cccEEEEcCCeEEEEEEEeeecCCceEEEECC--ee------------cCCCCceEEEEcCCeEEEEEcCceecCCceEE
Q psy7039 362 IRDMTVLAGEEFTITVPFSGRPKPTPIWTVNG--DE------------VSPDGRIKFETSENQTIYRNKSAKRATDSGSY 427 (516)
Q Consensus 362 ~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~--~~------------l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y 427 (516)
+..+.+.+|+.++|.|.........+.|++.. .. -....+|..........|.|.++.+ +|++.|
T Consensus 8 P~sl~~~~G~svtl~C~~s~~~~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~-~Dsa~Y 86 (107)
T d1d5il1 8 PSSMYASLGERVTITCKASQDINSYLSWFQQKPGKSPKTLIYRANRLVDGVPSRFSGSGSGQDYSLTISSLEY-EDMGIY 86 (107)
T ss_dssp CSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCG-GGCEEE
T ss_pred CCEEEECCCCCEEEEEEcCCCCCCccceeEeccccCeEEEEEeccccccCcCCceeecccCCEEEccccccCC-cCCEEE
Confidence 45677899999999998866556678898631 10 0123567777777778999999999 999999
Q ss_pred EEEEEcC
Q psy7039 428 TIQLVNT 434 (516)
Q Consensus 428 ~c~a~n~ 434 (516)
.|.+...
T Consensus 87 yCa~~~~ 93 (107)
T d1d5il1 87 YCLQYDE 93 (107)
T ss_dssp EEEECSS
T ss_pred EeeeccC
Confidence 9986543
|
| >d1lk3l1 b.1.1.1 (L:1-106) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.49 E-value=0.00022 Score=53.94 Aligned_cols=69 Identities=19% Similarity=0.183 Sum_probs=53.2
Q ss_pred ccEEEEcCCeEEEEEEEeeecCCceEEEECC--ee------------cCCCCceEEEEcCCeEEEEEcCceecCCceEEE
Q psy7039 363 RDMTVLAGEEFTITVPFSGRPKPTPIWTVNG--DE------------VSPDGRIKFETSENQTIYRNKSAKRATDSGSYT 428 (516)
Q Consensus 363 ~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~--~~------------l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~ 428 (516)
..+.+.+|+.++|.|.........+.|++.. .. -....++..........|.|.++.+ +|++.|.
T Consensus 8 ~s~~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~-~Dsa~Yy 86 (106)
T d1lk3l1 8 PALTVSPGEKLTISCKASESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGSGTDFTLTIDPVEA-DDTAIYF 86 (106)
T ss_dssp SEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCG-GGCEEEE
T ss_pred CeEEECCCCCEEEEEEeCCCCCccEEEEecCCCCCcEEEEEecccccCCcCCceeeecCCCEEEeEECCcCh-hhCCCcc
Confidence 4578899999999999976555678998631 10 0124577777777788999999999 9999999
Q ss_pred EEEE
Q psy7039 429 IQLV 432 (516)
Q Consensus 429 c~a~ 432 (516)
|.+.
T Consensus 87 Ca~~ 90 (106)
T d1lk3l1 87 CQQS 90 (106)
T ss_dssp EEEC
T ss_pred cccc
Confidence 9754
|
| >d1wfta_ b.1.2.1 (A:) Host cell factor 2, HCF-2 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Host cell factor 2, HCF-2 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.48 E-value=2.4e-05 Score=61.41 Aligned_cols=36 Identities=11% Similarity=0.044 Sum_probs=29.8
Q ss_pred EEEEcCceecCCceEEEEEEEcCCCceeEEEEEEEec
Q psy7039 412 IYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVD 448 (516)
Q Consensus 412 ~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~v~~ 448 (516)
.+.|.+|.+ ...|.|++.|.|..|.+..+....+.+
T Consensus 79 ~~~i~~L~p-~t~Y~frV~A~N~~G~Gp~S~~~~~~t 114 (123)
T d1wfta_ 79 ANAHIDYTS-RPAIVFRISAKNEKGYGPATQIRWLQG 114 (123)
T ss_dssp TTCCCBCSS-SCEEEEEEEEBSSSSBCCCEEEEEECC
T ss_pred EEEEcCCCC-CCEEEEEEEEecCCcCCCCCCcEEEEe
Confidence 457789999 999999999999999987766555554
|
| >d1olla1 b.1.1.4 (A:1-95) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Ligand binding domain of NK receptor NKp46 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.47 E-value=7.8e-05 Score=55.22 Aligned_cols=82 Identities=13% Similarity=0.001 Sum_probs=52.6
Q ss_pred ccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCce--eE
Q psy7039 363 RDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSD--SA 440 (516)
Q Consensus 363 ~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~--s~ 440 (516)
....+..|++++|.|... .....+.|++++........ .....+....+.|.++.. .|+|.|+|...+..+.. +.
T Consensus 11 P~~~V~~G~~VTL~C~~~-~~~~~f~L~k~g~~~~~~~~-~~~~~~~~a~F~i~~v~~-~~~G~Y~C~y~~~~~~S~~Sd 87 (95)
T d1olla1 11 PHFMVPKEKQVTICCQGN-YGAVEYQLHFEGSLFAVDRP-KPPERINKVKFYIPDMNS-RMAGQYSCIYRVGELWSEPSN 87 (95)
T ss_dssp SCSEEETTCCEEEEEECC-TTCCEEEEEETTEEEEEECC-SSCTTCCEEEEEESSCCG-GGCEEEEEEEEETTEECCCCC
T ss_pred CCCcccCCCcEEEEEecC-CCccEEEEEECCCCcceeEE-ccCCCccEEEEEEeeeec-CCCceEEEEeCCCCCccCCCC
Confidence 344688999999999863 22347888888753211000 000123346799999999 99999999988765432 33
Q ss_pred EEEEEEe
Q psy7039 441 SCKVYVV 447 (516)
Q Consensus 441 s~~l~v~ 447 (516)
...|.|+
T Consensus 88 ~leL~VT 94 (95)
T d1olla1 88 LLDLVVT 94 (95)
T ss_dssp CEEEEEE
T ss_pred CEEEEEe
Confidence 4555553
|
| >d2gsia1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]
Probab=97.46 E-value=0.00024 Score=54.13 Aligned_cols=88 Identities=10% Similarity=0.110 Sum_probs=52.1
Q ss_pred CcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCc-CceeeEEeeCCee-eccCCceEEeecCCee
Q psy7039 119 STLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSE-PFLNHGWSINGQV-CQIGGRADVQTTKSET 196 (516)
Q Consensus 119 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~i~W~~~~~~-~~~~~~~~~~~~~~~~ 196 (516)
..|..+.+.+|++++|.|.... ........-+-|++... ..+....+..... .....|+.....+...
T Consensus 6 QsP~s~s~~~G~svtL~C~~s~----------~~~~~~~~~i~WYrQ~pg~~~~~li~~~~~~~~g~~~rfs~~~~~~~~ 75 (111)
T d2gsia1 6 QSPASLAVSLGQPATISCGASK----------SVRTSGYSYMDWNQQKPGQPPRRLIYLVSNLESGVPARFSGSGSGTDF 75 (111)
T ss_dssp EECSEEEEETTSCEEEEEEESS----------CCCCSSSCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEE
T ss_pred eeCCEEEECCCCCEEEEEEECC----------CCccCCccceEEEEECCCCccEEEEEccCccCCCcCCcEEEecCCCch
Confidence 3456788999999999997650 00001111244555321 1111111111111 1123577766667788
Q ss_pred EEEeccCCCCCCeeEEEEEE
Q psy7039 197 VLDIPFCSRSDTGHYSLTLE 216 (516)
Q Consensus 197 ~l~i~~~~~~d~g~Y~c~~~ 216 (516)
.|.|.+++.+|++.|.|.+.
T Consensus 76 ~L~I~~~~~~DsA~YyCa~~ 95 (111)
T d2gsia1 76 TLNIHPVEEEDAATYYCSHI 95 (111)
T ss_dssp EEEESSCCGGGCEEEEEEEC
T ss_pred hcccccccccCCceEEEEEC
Confidence 99999999999999999754
|
| >d1wj3a_ b.1.2.1 (A:) Contactin 3 (KIAA1496) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Contactin 3 (KIAA1496) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.46 E-value=0.0003 Score=54.20 Aligned_cols=89 Identities=10% Similarity=0.136 Sum_probs=54.5
Q ss_pred ceeeeccCCeeEEEecCCC-CCCCCceeeccccccccccccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceE
Q psy7039 325 IDYTTVTPESVSMSWKPPV-DDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIK 403 (516)
Q Consensus 325 ~~~~~~~~~~~~l~W~~p~-~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~ 403 (516)
..+...+.+.+.|.|++|. ...+..|.+|. |.|..++. ....
T Consensus 24 ~~~~~~~~~~i~v~W~~~~~~~~~g~i~~Y~--------------------------------v~y~~~~~-----~~~~ 66 (117)
T d1wj3a_ 24 NVVWNATDTKVLLNWEQVKAMENESEVTGYK--------------------------------VFYRTSSQ-----NNVQ 66 (117)
T ss_dssp SCBCCEETTEEEEECCCCCCCSSSCCEEEEE--------------------------------EEEEESSC-----SSCE
T ss_pred ceEEeecCCEEEEEEeecccccCCCceeEEE--------------------------------EEEEecCC-----Ccee
Confidence 3455678899999999753 33444677772 23333321 1111
Q ss_pred EEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEEEE-ecCCCCC
Q psy7039 404 FETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYV-VDKPSPP 453 (516)
Q Consensus 404 ~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~v-~~~p~~P 453 (516)
...... .+.+.+|.+ +..|.|++.|.|..|.+..+..+.+ +..+..|
T Consensus 67 ~~~~~~--~~~~~~L~p-~t~Y~~~V~A~n~~G~G~~S~~v~v~~~~~~~P 114 (117)
T d1wj3a_ 67 VLNTNK--TSAELVLPI-KEDYIIEVKATTDGGDGTSSEQIRIPRITSSGP 114 (117)
T ss_dssp EEEESS--SEEEEECCC-SSCEEEEEEEEESSCCCCBCCCEEECCCCCCCS
T ss_pred eeecee--eEEEeeccC-CcEEEEEEEEEcCCccCCCCCCEEEeccCCCCC
Confidence 111122 345567888 9999999999999998766655555 3334444
|
| >d8faba1 b.1.1.1 (A:3-105) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain lambda variable domain, VL-lambda species: Human (Homo sapiens), cluster 5 [TaxId: 9606]
Probab=97.46 E-value=0.00018 Score=54.10 Aligned_cols=71 Identities=17% Similarity=0.202 Sum_probs=53.4
Q ss_pred ccEEEEcCCeEEEEEEEeeecCCceEEEECC--ee------------cCCCCceEEEEcCCeEEEEEcCceecCCceEEE
Q psy7039 363 RDMTVLAGEEFTITVPFSGRPKPTPIWTVNG--DE------------VSPDGRIKFETSENQTIYRNKSAKRATDSGSYT 428 (516)
Q Consensus 363 ~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~--~~------------l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~ 428 (516)
..+.+.+|+.++|.|.........+.|++.. .. -....++....+.....|.|.++.+ +|++.|.
T Consensus 6 ~sl~~~~G~svtl~C~~~~~~~~~~~WYrQ~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~-~Dsa~Yy 84 (103)
T d8faba1 6 PSVSVSPGQTARITCSANALPNQYAYWYQQKPGRAPVMVIYKDTQRPSGIPQRFSSSTSGTTVTLTISGVQA-EDEADYY 84 (103)
T ss_dssp SEEEECTTSCEEEEEECTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCG-GGCEEEE
T ss_pred CeEEECCCCCEEEEEEeCCCCCCCEEEEEccCCCceEEEeeeecccccccCCcEEECCCCCccCceEcCcch-hHCceEE
Confidence 4577899999999998865555578998732 11 0123466667777778999999999 9999999
Q ss_pred EEEEcC
Q psy7039 429 IQLVNT 434 (516)
Q Consensus 429 c~a~n~ 434 (516)
|.+...
T Consensus 85 CA~~~~ 90 (103)
T d8faba1 85 CQAWDN 90 (103)
T ss_dssp EEEEET
T ss_pred eeecCC
Confidence 987643
|
| >d1uena_ b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: KIAA0343 protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.45 E-value=0.00034 Score=54.50 Aligned_cols=105 Identities=13% Similarity=0.115 Sum_probs=65.2
Q ss_pred CCCCCCCCceeeeccCCeeEEEecCCCCC-CCCceeeccccccccccccEEEEcCCeEEEEEEEeeecCCceEEEECCee
Q psy7039 317 KPGPPTGPIDYTTVTPESVSMSWKPPVDD-GGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDE 395 (516)
Q Consensus 317 ~p~~p~~p~~~~~~~~~~~~l~W~~p~~~-~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~ 395 (516)
.|..+...+.+..++.+++.|+|++|... ....|.+|. +. .+......
T Consensus 13 ~P~~~P~~v~v~~~~~~si~l~W~~p~~~~~~~~i~~~~--------------------~~-----------~~~~~~~~ 61 (125)
T d1uena_ 13 LPMVAPGNVRVNVVNSTLAEVHWDPVPLKSIRGHLQGYR--------------------IY-----------YWKTQSSS 61 (125)
T ss_dssp CCCCCCSSCEEEEEETTEEEEECCCCCHHHHCSCEEEEE--------------------EE-----------EEEESCCC
T ss_pred CCCCCCcccEEEEecCCEEEEEEeCccCCCCCcceeeEE--------------------eE-----------EEeecCCc
Confidence 34333344889999999999999988632 222333331 00 11111110
Q ss_pred c---CCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEEEEecCCCCC
Q psy7039 396 V---SPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPP 453 (516)
Q Consensus 396 l---~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~v~~~p~~P 453 (516)
. ................+.|.+|.+ ...|.|++.|.|..|.+..+..+.+.+.+..|
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~i~~L~p-~t~Y~~~V~A~n~~G~g~~S~~~~~~T~~~~p 121 (125)
T d1uena_ 62 KRNRRHIEKKILTFQGSKTHGMLPGLEP-FSHYTLNVRVVNGKGEGPASPDRVFNTPEGSG 121 (125)
T ss_dssp CSTTCCCCEEEEEEESSCSEEEEESCCS-SCEEEEEEEEEESSCEEEECCCEEEECCCCCS
T ss_pred cceeecccceEEEeCCCccEEEECCCCC-CCEEEEEEEEEeCCcccCCCCCEEEECCCCCc
Confidence 0 011112222334445799999999 99999999999999988777777888776655
|
| >d1vesa_ b.1.1.1 (A:) Novel antigen receptor 12Y-2 {Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Novel antigen receptor 12Y-2 species: Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]
Probab=97.45 E-value=0.00028 Score=53.99 Aligned_cols=73 Identities=21% Similarity=0.247 Sum_probs=50.5
Q ss_pred CcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCc--CceeeEEee--CCe----eeccCCceEEe
Q psy7039 119 STLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSE--PFLNHGWSI--NGQ----VCQIGGRADVQ 190 (516)
Q Consensus 119 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--p~~~i~W~~--~~~----~~~~~~~~~~~ 190 (516)
..|..+.+.+|++++|.|... +. ....+.|++ .+. .+....++...
T Consensus 5 Q~P~s~~~~~G~svtL~C~~s--------------------------~~~~~~~~~~Wyrq~~g~~~~~~~~~~~~~~~~ 58 (113)
T d1vesa_ 5 QTPRTATKETGESLTINCVLR--------------------------DASFELKDTGWYRTKLGSTNEQSISIGGRYVET 58 (113)
T ss_dssp EECSEEEECTTCCEEEEEEEE--------------------------SCSSCCCEEEEEEEETTCCCCEECCCBTTEEEE
T ss_pred eeCCEEEEcCCCCEEEEEEEC--------------------------CCcccCCccceeeeeccccceeeeeecccccce
Confidence 456678899999999999887 32 334577876 221 12223455443
Q ss_pred e--cCCeeEEEeccCCCCCCeeEEEEEEc
Q psy7039 191 T--TKSETVLDIPFCSRSDTGHYSLTLEN 217 (516)
Q Consensus 191 ~--~~~~~~l~i~~~~~~d~g~Y~c~~~~ 217 (516)
. ......|+|.+++.+|+|.|.|.+..
T Consensus 59 ~~~~~~~~~L~I~~l~~~Dsa~YyCa~~~ 87 (113)
T d1vesa_ 59 VNKGSKSFSLRISDLRVEDSGTYKCQAFY 87 (113)
T ss_dssp EETTTTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred eECCCCceeeeecccccCCcceEeeeeec
Confidence 2 23346899999999999999998753
|
| >d1fo0a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]
Probab=97.44 E-value=0.00018 Score=55.46 Aligned_cols=87 Identities=13% Similarity=0.055 Sum_probs=49.4
Q ss_pred CcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecC--cCceeeEEeeC-CeeeccCCceEEee--cC
Q psy7039 119 STLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLS--EPFLNHGWSIN-GQVCQIGGRADVQT--TK 193 (516)
Q Consensus 119 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~p~~~i~W~~~-~~~~~~~~~~~~~~--~~ 193 (516)
..+..+.+.+|++++|.|...+ ...+..+.|++.. .....+..... ...-....++.... ..
T Consensus 4 Q~p~~v~~~~G~~Vtl~C~~~~-------------~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 70 (115)
T d1fo0a_ 4 QTQTSISVMEKTTVTMDCVYET-------------QDSSYFLFWYKQTASGEIVFLIRQDSYKKENATVGHYSLNFQKPK 70 (115)
T ss_dssp CCCCEEEEETTCCEEECCEECC-------------CCSSCEEEEEEECTTCCEEEEEEEETTCCSCCEETTEEEEEEGGG
T ss_pred ccCCEEEEcCCCCEEEEEEEcC-------------CCCCCCCEEEEeCCCCCCEEEEEEecceeecccCCceEEEEeccC
Confidence 4456788999999999998761 0111223444421 11111111111 11111123444443 34
Q ss_pred CeeEEEeccCCCCCCeeEEEEEEcC
Q psy7039 194 SETVLDIPFCSRSDTGHYSLTLENN 218 (516)
Q Consensus 194 ~~~~l~i~~~~~~d~g~Y~c~~~~~ 218 (516)
....|.|.+++.+|+|.|.|.+...
T Consensus 71 ~~~~L~I~~~~~~Dsa~YyCa~~~~ 95 (115)
T d1fo0a_ 71 SSIGLIITATQIEDSAVYFCAMRGD 95 (115)
T ss_dssp TEEEEEECSCCGGGCEEEEEEEECC
T ss_pred CEEEEEECCCCccccccccceeecC
Confidence 5678999999999999999987643
|
| >d1lp9e1 b.1.1.1 (E:0-117) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]
Probab=97.44 E-value=0.00021 Score=55.00 Aligned_cols=73 Identities=16% Similarity=0.181 Sum_probs=51.6
Q ss_pred cccEEEEcCCeEEEEEEEeeecCCceEEEECC--eec------------CCCCceEEEE--cCCeEEEEEcCceecCCce
Q psy7039 362 IRDMTVLAGEEFTITVPFSGRPKPTPIWTVNG--DEV------------SPDGRIKFET--SENQTIYRNKSAKRATDSG 425 (516)
Q Consensus 362 ~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~--~~l------------~~~~~~~~~~--~~~~~~l~i~~~~~~~~~g 425 (516)
+..+.+.+|+.++|.|.........+.|++.. ..+ ....++.... ......|.|.++.+ +|+|
T Consensus 8 ~~~v~v~~G~~vtL~C~~~~~~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~-~Dsg 86 (115)
T d1lp9e1 8 EGLVTLTEGLPVMLNCTYQSTYSPFLFWYVQHLNEAPKLLLKSFTDNKRPEHQGFHATLHKSSSSFHLQKSSAQL-SDSA 86 (115)
T ss_dssp CSEEEEETTSCEEECEEEECSSSCCEEEEEECTTSCCEEEEESCSSTTCCCCSSCEECCBGGGTBCCEEESSCCG-GGCE
T ss_pred CCeEEECCCCCEEEEEEEeCCCcCCeeEEEeCCCCceeeeeeeeeccCCcceeeeeeeccCCCCeEEeecccccc-ccCc
Confidence 45678899999999999877666789998732 100 1123344332 22345799999999 9999
Q ss_pred EEEEEEEcCC
Q psy7039 426 SYTIQLVNTV 435 (516)
Q Consensus 426 ~y~c~a~n~~ 435 (516)
.|.|.+....
T Consensus 87 ~YyCa~~~~~ 96 (115)
T d1lp9e1 87 LYYCALFLAS 96 (115)
T ss_dssp EEEEEEEECS
T ss_pred cceEEEEcCC
Confidence 9999886653
|
| >d2bnqd1 b.1.1.1 (D:2-114) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), alpha-chain [TaxId: 9606]
Probab=97.43 E-value=0.00019 Score=54.98 Aligned_cols=75 Identities=17% Similarity=0.324 Sum_probs=52.4
Q ss_pred ccccEEEEcCCeEEEEEEEeeecCCceEEEECC--eec------------CCCCceE--EEEcCCeEEEEEcCceecCCc
Q psy7039 361 SIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNG--DEV------------SPDGRIK--FETSENQTIYRNKSAKRATDS 424 (516)
Q Consensus 361 ~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~--~~l------------~~~~~~~--~~~~~~~~~l~i~~~~~~~~~ 424 (516)
.+..+.+.+|+.++|.|...+.....+.|++.. ... ....++. .........|.|.++.. +|+
T Consensus 6 ~P~~v~v~~G~sv~L~C~~s~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~-~Ds 84 (113)
T d2bnqd1 6 IPAALSVPEGENLVLNCSFTDSAIYNLQWFRQDPGKGLTSLLLIQSSQREQTSGRLNASLDKSSGRSTLYIAASQP-GDS 84 (113)
T ss_dssp SSSEEEEETTCCEEEEEEESCCCEEEEEEEEECTTSCEEEEEEEETTCCEEEETTEEEEEETTTTEEEEEESSCCG-GGC
T ss_pred eCCEEEEcCCCCEEEEEEEecCcccCCeEEEeccccccceeeeeccceecccccceeeeeccCCCEEEeeeecCCC-CCC
Confidence 356688899999999999876555578898732 110 0112222 23344567899999999 999
Q ss_pred eEEEEEEEcCCC
Q psy7039 425 GSYTIQLVNTVG 436 (516)
Q Consensus 425 g~y~c~a~n~~G 436 (516)
|.|.|.+....+
T Consensus 85 g~YyCa~~~~~~ 96 (113)
T d2bnqd1 85 ATYLCAVRPTSG 96 (113)
T ss_dssp EEEEEEEEESSS
T ss_pred cEEeEeEecCCC
Confidence 999999875543
|
| >d1x5ia1 b.1.2.1 (A:8-120) Neogenin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Neogenin species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.43 E-value=0.00011 Score=56.39 Aligned_cols=85 Identities=16% Similarity=0.252 Sum_probs=56.0
Q ss_pred ceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEE
Q psy7039 325 IDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKF 404 (516)
Q Consensus 325 ~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~ 404 (516)
+.+.. ..+++.|+|.+|.+++| +|.+|. |.|...+. .....
T Consensus 27 ~~~~~-~~~si~v~W~~p~~~~g-~i~~Y~--------------------------------i~~~~~~~-----~~~~~ 67 (113)
T d1x5ia1 27 LHVRP-LVTSIVVSWTPPENQNI-VVRGYA--------------------------------IGYGIGSP-----HAQTI 67 (113)
T ss_dssp EEEEE-ETTEEEEEEECCSCTTB-CCCEEE--------------------------------EEECSSCG-----GGEEE
T ss_pred eeeee-CCCEEEEEEEccccCCc-cEEEEE--------------------------------EEeeeccc-----cceee
Confidence 55543 56899999999988766 677772 22322211 12223
Q ss_pred EEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEEEEecCC
Q psy7039 405 ETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKP 450 (516)
Q Consensus 405 ~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~v~~~p 450 (516)
........++|.+|.+ ...|.|++.|.|..|.+.. ....+.++|
T Consensus 68 ~~~~~~~~~~i~~L~p-~t~Y~~~V~A~n~~G~g~~-~~~~~~T~P 111 (113)
T d1x5ia1 68 KVDYKQRYYTIENLDP-SSHYVITLKAFNNVGEGIP-LYESAVTRP 111 (113)
T ss_dssp ECCTTCCEEEECSCCS-SCEECCEEEEECSSCBCCC-CCCCEECCC
T ss_pred eeeCCccEEEEecccc-CcEEEEEEEEECCCcCCCC-eeeEEEeCC
Confidence 3344556789999999 9999999999999997643 223344443
|
| >d2g5ra1 b.1.1.1 (A:24-144) N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.42 E-value=0.00012 Score=56.94 Aligned_cols=92 Identities=14% Similarity=0.143 Sum_probs=48.7
Q ss_pred CcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCc-CceeeEEee--CCeeecc--CCceEEee--
Q psy7039 119 STLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSE-PFLNHGWSI--NGQVCQI--GGRADVQT-- 191 (516)
Q Consensus 119 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~i~W~~--~~~~~~~--~~~~~~~~-- 191 (516)
..+..+.+.+|+.+.|.|.+. .|.........+.+-|+.... +........ +...... ..|+.+..
T Consensus 6 ~~~~svtv~~G~~V~ipC~~~-------~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~ 78 (121)
T d2g5ra1 6 TMQSSVTVQEGMCVHVRCSFS-------YPVDSQTDSDPVHGYWFRAGNDISWKAPVATNNPAWAVQEETRDRFHLLGDP 78 (121)
T ss_dssp ECCSEEEECTTCCEEECCEEE-------CC--CTTTTSCCEEEEEECC-----CCCSEESCTTSCCCTTTTTTEEECSCG
T ss_pred EeCCEEEEccCCcEEEEEEEe-------CCCCCCcccccEEEEeeEecCCCceEEEEeeCCCCceeccccceEEEEeeeC
Confidence 345668999999999999987 111111111222233333211 111111111 1111111 13455432
Q ss_pred cCCeeEEEeccCCCCCCeeEEEEEEc
Q psy7039 192 TKSETVLDIPFCSRSDTGHYSLTLEN 217 (516)
Q Consensus 192 ~~~~~~l~i~~~~~~d~g~Y~c~~~~ 217 (516)
.....+|.|.+++.+|+|.|.|.+..
T Consensus 79 ~~~~~sL~I~~v~~~DsG~Y~C~v~~ 104 (121)
T d2g5ra1 79 QTKNCTLSIRDARMSDAGRYFFRMEK 104 (121)
T ss_dssp GGTBCCEEECSCCGGGCEEEEEEEEE
T ss_pred cCCEEEEEECCCChHHCEEEEEEEEe
Confidence 23456899999999999999999864
|
| >d1i9ea_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]
Probab=97.42 E-value=0.00011 Score=56.53 Aligned_cols=84 Identities=18% Similarity=0.039 Sum_probs=47.0
Q ss_pred CcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCc-Ccee-eEEee-CCeeeccC--CceEEeecC
Q psy7039 119 STLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSE-PFLN-HGWSI-NGQVCQIG--GRADVQTTK 193 (516)
Q Consensus 119 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~-i~W~~-~~~~~~~~--~~~~~~~~~ 193 (516)
.++..+.+.+|++++|.|...+ .....+-|+++.. ..+. +.... ........ .++......
T Consensus 5 Q~~~~v~v~~G~svtl~C~~~~--------------~~~~~~~Wyrq~pg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 70 (115)
T d1i9ea_ 5 QPDARVTVSEGASLQLRCKYSY--------------SATPYLFWYVQYPRQGLQLLLKYYSGDPVVQGVNGFEAEFSKSN 70 (115)
T ss_dssp CCCSEEEEETTSCEEECCEEEC--------------SSCCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBTTT
T ss_pred cCCCeEEECCCCCEEEEEEEcC--------------CCCCCEEEEEECCCCceeeeeeeccceeccccCcceeEEEeCcC
Confidence 3455688999999999998871 0111223443211 1111 11111 11111111 222333344
Q ss_pred CeeEEEeccCCCCCCeeEEEEEE
Q psy7039 194 SETVLDIPFCSRSDTGHYSLTLE 216 (516)
Q Consensus 194 ~~~~l~i~~~~~~d~g~Y~c~~~ 216 (516)
....|.|.+++.+|+|.|.|.+.
T Consensus 71 ~~~~L~I~~~~~~Dsg~YyCa~~ 93 (115)
T d1i9ea_ 71 SSFHLRKASVHWSDSAVYFCAVS 93 (115)
T ss_dssp TBCCEEESSCCGGGCEEEEEEEE
T ss_pred CEEEEecccccccccceeccccc
Confidence 55789999999999999999865
|
| >d2ij0c1 b.1.1.1 (C:1-117) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=97.42 E-value=0.00036 Score=53.86 Aligned_cols=86 Identities=14% Similarity=0.152 Sum_probs=49.6
Q ss_pred CcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCc-Ccee-eEEee-CCeee-c---cCCceEEee
Q psy7039 119 STLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSE-PFLN-HGWSI-NGQVC-Q---IGGRADVQT 191 (516)
Q Consensus 119 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~-i~W~~-~~~~~-~---~~~~~~~~~ 191 (516)
..|..+.+.+|++++|.|...+ . ....+.|++... ..+. +.... ..... . ...++.+..
T Consensus 6 Q~P~~~~~~~G~~v~L~C~~~~-------------~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~f~~~~ 71 (118)
T d2ij0c1 6 QHPSMVIVKSGTSVKIECRSLD-------------T-NIHTMFWYRQFPKQSLMLMATSHQGFNAIYEQGVVKDKFLINH 71 (118)
T ss_dssp EECSEEEECTTCCEEEEEEECS-------------S-CCSEEEEEEECTTSCEEEEEEEETTSCCEECTTCCTTTEEEEE
T ss_pred EcCCeEEEcCCCCEEEEEEEcC-------------C-cccEEEEEEEcccccceeeeeccccccceeccccccccceeec
Confidence 4456678999999999998761 0 112344554311 1111 11111 11111 1 124555443
Q ss_pred -cCCeeEEEeccCCCCCCeeEEEEEEcC
Q psy7039 192 -TKSETVLDIPFCSRSDTGHYSLTLENN 218 (516)
Q Consensus 192 -~~~~~~l~i~~~~~~d~g~Y~c~~~~~ 218 (516)
......|.|.+++++|+|.|.|.+...
T Consensus 72 ~~~~~~~L~i~~~~~~Dsa~YyCa~~~~ 99 (118)
T d2ij0c1 72 ASPTLSTLTVTSAHPEDSGFYVCSALAG 99 (118)
T ss_dssp CSSSEEEEEECSCCGGGCEEEEEEEECS
T ss_pred cccccccccccccccccCceEEEEEecC
Confidence 344568999999999999999987643
|
| >d1bd2d1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), alpha-chain [TaxId: 9606]
Probab=97.41 E-value=0.00033 Score=53.39 Aligned_cols=85 Identities=13% Similarity=-0.013 Sum_probs=48.2
Q ss_pred CcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecC--cCceeeEEeeCCeeeccCCceEEe--ecCC
Q psy7039 119 STLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLS--EPFLNHGWSINGQVCQIGGRADVQ--TTKS 194 (516)
Q Consensus 119 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~p~~~i~W~~~~~~~~~~~~~~~~--~~~~ 194 (516)
..+..+.+.+|++++|.|...+ . ....+-|+... .....+.............++... ....
T Consensus 5 Q~p~s~~~~~G~svtl~C~~s~-------------~-~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 70 (111)
T d1bd2d1 5 QNSPSLSVQEGRISILNCDYTN-------------S-MFDYFLWYKKYPAEGPTFLISISSIKDKNADGRFTVFLNKSAK 70 (111)
T ss_dssp CCCSEEEEETTSCEEEEEEECC-------------T-TCCEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTT
T ss_pred ccCCEEEEcCCCCEEEEEEeCC-------------C-CCCeEEEEEECCCCcceeeeeeeceeccccCCcceEEEEccCC
Confidence 4456688999999999998771 0 01112333321 111111111111111112344333 3455
Q ss_pred eeEEEeccCCCCCCeeEEEEEEc
Q psy7039 195 ETVLDIPFCSRSDTGHYSLTLEN 217 (516)
Q Consensus 195 ~~~l~i~~~~~~d~g~Y~c~~~~ 217 (516)
...|.|.+++.+|+|.|.|.+..
T Consensus 71 ~~~L~I~~~~~~Dsa~YyCa~~~ 93 (111)
T d1bd2d1 71 HLSLHIVPSQPGDSAVYFCAAME 93 (111)
T ss_dssp EEEEEESSCCGGGCEEEEEEEES
T ss_pred EEEEEECCCcccccEEEEeeccC
Confidence 78999999999999999998753
|
| >d1j05a_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]
Probab=97.41 E-value=0.00024 Score=54.19 Aligned_cols=89 Identities=11% Similarity=0.060 Sum_probs=52.8
Q ss_pred CcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCc-CceeeEEeeCCeee-ccCCceEEeecCCee
Q psy7039 119 STLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSE-PFLNHGWSINGQVC-QIGGRADVQTTKSET 196 (516)
Q Consensus 119 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~i~W~~~~~~~-~~~~~~~~~~~~~~~ 196 (516)
..|..+.+.+|++++|.|.... ....-....+-|++... ..+.+..+.....- ....++.....+...
T Consensus 6 QsP~~l~v~~G~svtl~C~~s~----------s~~~~~~~~~~WYrq~~g~~p~~liy~~~~~~~~~~~~~~~~~~~~~~ 75 (111)
T d1j05a_ 6 QSPASLAVSLGQRATMSCRAGE----------SVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSRTDF 75 (111)
T ss_dssp EECSEEECCTTSCEEEEEEESS----------CCBSSSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEECSSSEE
T ss_pred ccCCEEEECCCCCEEEEEEecc----------CCccCCceeEEEEEccCCCCCEEEEEeeccccCCCCCcEEEecCCCEE
Confidence 3456688899999999998750 00111112244554321 11222222221111 123466666667788
Q ss_pred EEEeccCCCCCCeeEEEEEEc
Q psy7039 197 VLDIPFCSRSDTGHYSLTLEN 217 (516)
Q Consensus 197 ~l~i~~~~~~d~g~Y~c~~~~ 217 (516)
.|.|.+++.+|+|.|.|.+..
T Consensus 76 ~L~I~~~~~~Dsa~YyCa~~~ 96 (111)
T d1j05a_ 76 TLIIDPVEADDVATYYCQQTN 96 (111)
T ss_dssp EEEESSCCGGGCEEEEEEECS
T ss_pred EEEEcccccccCccEEEeecC
Confidence 999999999999999997653
|
| >d1mjul1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]
Probab=97.41 E-value=0.00029 Score=53.82 Aligned_cols=88 Identities=16% Similarity=0.127 Sum_probs=51.7
Q ss_pred CcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCc-CceeeEEeeCCe-eeccCCceEEeecCCee
Q psy7039 119 STLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSE-PFLNHGWSINGQ-VCQIGGRADVQTTKSET 196 (516)
Q Consensus 119 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~i~W~~~~~-~~~~~~~~~~~~~~~~~ 196 (516)
..+..+.+.+|++++|.|...+.. ..-..+..+-|+.... ..+.+..+.... ......++.....+...
T Consensus 6 Q~p~slsv~~G~svtL~C~~s~~~---------~~~~~~~~i~WYrq~~g~~~~~liy~~~~~~~~~~~r~~~~~s~~~~ 76 (112)
T d1mjul1 6 QAAPSVPVTPGESVSISCRSSKSL---------LHSNGNTYLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSGSGSGTAF 76 (112)
T ss_dssp CCCSEEEECTTSCEEEEEEESSCC---------BCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEECSSEE
T ss_pred ecCCEEEECCCCCEEEEEEECCCC---------ccCCCCceeEEEECCCCCcEEEEEEeCCcccCCCCCcEEeecCCCEE
Confidence 345668899999999999876100 0001122344543311 112222222211 11123466666677788
Q ss_pred EEEeccCCCCCCeeEEEEE
Q psy7039 197 VLDIPFCSRSDTGHYSLTL 215 (516)
Q Consensus 197 ~l~i~~~~~~d~g~Y~c~~ 215 (516)
.|.|.+++.+|++.|.|..
T Consensus 77 ~L~Is~~~~~DsAvYyCa~ 95 (112)
T d1mjul1 77 TLRISRVEAEDVGVYYCLQ 95 (112)
T ss_dssp EEEESSCCGGGCEEEEEEE
T ss_pred EEEECCccccCCceEEEEe
Confidence 9999999999999999954
|
| >d1lgva1 b.1.1.1 (A:1-112) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 4 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain lambda variable domain, VL-lambda species: Human (Homo sapiens), cluster 4 [TaxId: 9606]
Probab=97.40 E-value=0.0008 Score=51.25 Aligned_cols=74 Identities=11% Similarity=0.066 Sum_probs=54.2
Q ss_pred cccEEEEcCCeEEEEEEEeeec---CCceEEEECC--e------------ecCCCCceEEEEcCCeEEEEEcCceecCCc
Q psy7039 362 IRDMTVLAGEEFTITVPFSGRP---KPTPIWTVNG--D------------EVSPDGRIKFETSENQTIYRNKSAKRATDS 424 (516)
Q Consensus 362 ~~~~~v~~g~~~~l~C~~~g~p---~~~i~W~~~~--~------------~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~ 424 (516)
+..+.+.+|++++|.|...+.. ...+.|++.. . ......++..........|.|.++.+ +|+
T Consensus 7 P~s~~~~~G~svtl~C~~~~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~-~Ds 85 (112)
T d1lgva1 7 PASVSGSPGQSITVSCTGVSSIVGSYNLVSWYQQHPGKAPKLLTYEVNKRPSGVSDRFSGSKSGNSASLTISGLQA-EDE 85 (112)
T ss_dssp CSEEEECTTCCEEEEEECCCCSSSCCCCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEECSCCG-GGC
T ss_pred CCcEEECCCCCEEEEEEeCCCCCCCCCcceeeeeeecccceeeeeeeccccCCCcccEEEECCCCEeeEEeCcCcc-ccC
Confidence 3567889999999999986532 2358899731 1 11123466666677788999999999 999
Q ss_pred eEEEEEEEcCCC
Q psy7039 425 GSYTIQLVNTVG 436 (516)
Q Consensus 425 g~y~c~a~n~~G 436 (516)
+.|.|.+.+..+
T Consensus 86 a~YyCa~~~~~~ 97 (112)
T d1lgva1 86 ADYYCSSYDGSS 97 (112)
T ss_dssp EEEEEEEECSSS
T ss_pred EEEEEeeecCCC
Confidence 999998876443
|
| >d2esvd1 b.1.1.1 (D:4-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), alpha-chain [TaxId: 9606]
Probab=97.39 E-value=0.00043 Score=52.66 Aligned_cols=72 Identities=11% Similarity=0.088 Sum_probs=50.0
Q ss_pred cccEEEEcCCeEEEEEEEeeec-CCceEEEECC--eec------------CCCCceEEEEcCCeEEEEEcCceecCCceE
Q psy7039 362 IRDMTVLAGEEFTITVPFSGRP-KPTPIWTVNG--DEV------------SPDGRIKFETSENQTIYRNKSAKRATDSGS 426 (516)
Q Consensus 362 ~~~~~v~~g~~~~l~C~~~g~p-~~~i~W~~~~--~~l------------~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~ 426 (516)
+..+.+.+|++++|.|...... ...+.|++.. ... ....++..........|.|.++.+ .|+|.
T Consensus 5 P~svsv~~G~~vtl~C~~s~~~~~~~l~WYrq~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~-~Dsa~ 83 (110)
T d2esvd1 5 PPSMDCAEGRAANLPCNHSTISGNEYVYWYRQIHSQGPQYIIHGLKNNETNEMASLIITEDRKSSTLILPHATL-RDTAV 83 (110)
T ss_dssp CSEEEEETTSCEEEEEECTTCCTTEEEEEEEECTTSCCEEEEEESSSCEECSSCEEEECTTCSEEEEEESSCCG-GGCEE
T ss_pred CCEEEECCCCCEEEEEEEcCCCCCCeEEEEEECCCCccEEeeeeeceecccccceeeecccCCeeeehhccccc-CCceE
Confidence 3568899999999999875433 3358898732 110 112233444445667899999999 99999
Q ss_pred EEEEEEcC
Q psy7039 427 YTIQLVNT 434 (516)
Q Consensus 427 y~c~a~n~ 434 (516)
|.|.+...
T Consensus 84 YyCa~~~~ 91 (110)
T d2esvd1 84 YYCIVVRS 91 (110)
T ss_dssp EEEEEEES
T ss_pred EEEEEeCC
Confidence 99988644
|
| >d1bwwa_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Human (Homo sapiens), cluster 1 [TaxId: 9606]
Probab=97.39 E-value=0.00033 Score=53.21 Aligned_cols=71 Identities=17% Similarity=0.138 Sum_probs=54.4
Q ss_pred cccEEEEcCCeEEEEEEEeeecCCceEEEECCe--------------ecCCCCceEEEEcCCeEEEEEcCceecCCceEE
Q psy7039 362 IRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGD--------------EVSPDGRIKFETSENQTIYRNKSAKRATDSGSY 427 (516)
Q Consensus 362 ~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~--------------~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y 427 (516)
+..+.+.+|+.+.|.|...+.....+.|++... ......++.....+....|+|.++.+ +|++.|
T Consensus 10 P~~l~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~l~~-~Dsa~Y 88 (109)
T d1bwwa_ 10 PSSLSASVGDRVTITCQASQDIIKYLNWYQQKPGKAPKLLIYEASNLQAGVPSRFSGSGSGTDYTFTISSLQP-EDIATY 88 (109)
T ss_dssp CSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCG-GGCEEE
T ss_pred CCEEEECCCCCEEEEEEecCCCCCcceEeeeccCCCCEEEEEecccCCCCCCCCEEeeCCCCEeEEEEeecee-CcCceE
Confidence 456788999999999998766556788987311 11124567777777778899999999 999999
Q ss_pred EEEEEc
Q psy7039 428 TIQLVN 433 (516)
Q Consensus 428 ~c~a~n 433 (516)
.|.+..
T Consensus 89 yCA~~~ 94 (109)
T d1bwwa_ 89 YCQQYQ 94 (109)
T ss_dssp EEEECS
T ss_pred EEeecC
Confidence 998764
|
| >d1q9ra1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]
Probab=97.39 E-value=0.00024 Score=54.36 Aligned_cols=90 Identities=11% Similarity=0.092 Sum_probs=50.0
Q ss_pred CcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCc-CceeeEEeeCC-eeeccCCceEEeecCCee
Q psy7039 119 STLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSE-PFLNHGWSING-QVCQIGGRADVQTTKSET 196 (516)
Q Consensus 119 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~i~W~~~~-~~~~~~~~~~~~~~~~~~ 196 (516)
..|..+.+.+|++++|.|...+-.. ..--....+.|++... ..+.+.-+... .......++.........
T Consensus 6 Q~P~~v~~~~G~svtL~C~~s~~~~--------~~~~~~~~~~WYrq~~g~~p~ll~~~~~~~~~~~~~~~s~~~s~~~~ 77 (113)
T d1q9ra1 6 QSPSSLAVSAGEKVTMSCKSSQSLL--------NSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGSGTDF 77 (113)
T ss_dssp EECSEEEEETTSCEEEEEEESSCCE--------ETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEE
T ss_pred ccCCEEEECCCCCEEEEEEECCCcc--------cCCCCCcceEEEecCCCCCCEEEEecccccCCCCCccEEEeCCCCeE
Confidence 3466788999999999998651000 0000001133433210 11111111111 111223566666667778
Q ss_pred EEEeccCCCCCCeeEEEEEE
Q psy7039 197 VLDIPFCSRSDTGHYSLTLE 216 (516)
Q Consensus 197 ~l~i~~~~~~d~g~Y~c~~~ 216 (516)
.|.|.+++++|+|.|.|...
T Consensus 78 ~L~I~~l~~~Dsa~YyCA~~ 97 (113)
T d1q9ra1 78 TLTITSVQAEDLAVYYCKQS 97 (113)
T ss_dssp EEEESSCCGGGCEEEEEEEC
T ss_pred eEEecccccCCCeEEEeccc
Confidence 99999999999999999753
|
| >d2gj6d1 b.1.1.1 (D:15-114) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), beta-chain [TaxId: 10090]
Probab=97.39 E-value=0.00029 Score=51.90 Aligned_cols=76 Identities=18% Similarity=0.115 Sum_probs=44.0
Q ss_pred CCeEEEEEeeeeccccccCccccccccccCccceeecCc-CceeeEEeeCCeeeccCCceEEe--ecCCeeEEEeccCCC
Q psy7039 129 GQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSE-PFLNHGWSINGQVCQIGGRADVQ--TTKSETVLDIPFCSR 205 (516)
Q Consensus 129 g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~i~W~~~~~~~~~~~~~~~~--~~~~~~~l~i~~~~~ 205 (516)
|++++|.|...+ ..+..+-|++... ..+.+.............|+... ......+|.|.++++
T Consensus 1 G~~vtl~C~~~~--------------~~~~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~rf~~~~~~~~~~~sL~I~~~~~ 66 (94)
T d2gj6d1 1 GAIASLNCTYSD--------------RGSQSFFWYRQYSGKSPELIMSIYSNGDKEDGRFTAQLNKASQYVSLLIRDSQP 66 (94)
T ss_dssp TSCEEEEEEECC--------------TTCCEEEEEEECTTSCCEEEEEECSSEEEEETTEEEEEETTTTEEEEEECSCCG
T ss_pred CccEEEEEEEcc--------------ccCCcEEEEEECCCcccccceeeeeeccCCCCcEEEEecCCCCEEeEEeecccc
Confidence 788999999871 1222344554321 12222221111112223456554 234457899999999
Q ss_pred CCCeeEEEEEEcC
Q psy7039 206 SDTGHYSLTLENN 218 (516)
Q Consensus 206 ~d~g~Y~c~~~~~ 218 (516)
+|+|.|.|.+...
T Consensus 67 ~Dsg~YyCa~~~~ 79 (94)
T d2gj6d1 67 SDSATYLCAVTTD 79 (94)
T ss_dssp GGCEEEEEEEESS
T ss_pred CcCccceeeEecC
Confidence 9999999987643
|
| >d1f3rb2 b.1.1.1 (B:139-257) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.38 E-value=0.00018 Score=55.51 Aligned_cols=83 Identities=13% Similarity=0.082 Sum_probs=49.4
Q ss_pred cccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCc--CceeeEEeeCCeeeccCCceEEeecCCeeE
Q psy7039 120 TLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSE--PFLNHGWSINGQVCQIGGRADVQTTKSETV 197 (516)
Q Consensus 120 ~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~ 197 (516)
.|..+.+.+|++++|.|...+ .....+.|++... ....+.+...........++.....+....
T Consensus 7 ~P~sv~~~~G~svtl~C~~s~--------------~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~fs~~~~~~~~~ 72 (119)
T d1f3rb2 7 SPSLLSASVGDRVTLSCKGSQ--------------NINNYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGSGTDYT 72 (119)
T ss_dssp ETSEECCCTTCCEEEEEECSS--------------CCBTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEEBTEEE
T ss_pred cCCEEEECCCCCEEEEEEeCC--------------CCcceeEEeeeecccccEEEEEeeccccCceeeeecccCCCCEEE
Confidence 355677899999999998771 0111234444311 111111111111112235566555666679
Q ss_pred EEeccCCCCCCeeEEEEEE
Q psy7039 198 LDIPFCSRSDTGHYSLTLE 216 (516)
Q Consensus 198 l~i~~~~~~d~g~Y~c~~~ 216 (516)
|.|.+++.+|+|.|.|...
T Consensus 73 L~I~~~~~~DsavYyCa~~ 91 (119)
T d1f3rb2 73 LTISSLQPEDVATYFCYQY 91 (119)
T ss_dssp EEECSCCGGGCSEEEEEEE
T ss_pred EEcccCccCCCeEEEeecc
Confidence 9999999999999999764
|
| >d1yqvl1 b.1.1.1 (L:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=97.37 E-value=0.0003 Score=52.94 Aligned_cols=83 Identities=8% Similarity=0.006 Sum_probs=50.6
Q ss_pred CcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcC-ceeeEEeeCCe-eeccCCceEEeecCCee
Q psy7039 119 STLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEP-FLNHGWSINGQ-VCQIGGRADVQTTKSET 196 (516)
Q Consensus 119 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~i~W~~~~~-~~~~~~~~~~~~~~~~~ 196 (516)
..|..+.+.+|++++|.|.... ....+-|+..... .+.+..+.... ......++.....+...
T Consensus 5 QsP~~l~~~~G~~vtl~C~~s~---------------~~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~ 69 (104)
T d1yqvl1 5 QSPAIMSASPGEKVTMTCSASS---------------SVNYMYWYQQKSGTSPKRWIYDTSKLASGVPVRFSGSGSGTSY 69 (104)
T ss_dssp EESSEEEECTTCCEEEEEEESS---------------CCSCCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEE
T ss_pred CcCCeEEECCCCCEEEEEEeCC---------------CCCccEEEEeeccCceEEEEecccccCCCcCceEEEecCCCEE
Confidence 4566788999999999998651 1122345543211 11111111111 11123456666666778
Q ss_pred EEEeccCCCCCCeeEEEEEE
Q psy7039 197 VLDIPFCSRSDTGHYSLTLE 216 (516)
Q Consensus 197 ~l~i~~~~~~d~g~Y~c~~~ 216 (516)
.|.|.+++.+|+|.|.|...
T Consensus 70 ~L~I~~~~~~Dsa~YyCa~~ 89 (104)
T d1yqvl1 70 SLTISSMETEDAATYYCQQW 89 (104)
T ss_dssp EEEESSCCGGGCEEEEEEEC
T ss_pred EEEecccCcccCCeEEEEec
Confidence 99999999999999999753
|
| >d1ogad1 b.1.1.1 (D:3-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), alpha-chain [TaxId: 9606]
Probab=97.37 E-value=0.00051 Score=52.67 Aligned_cols=85 Identities=18% Similarity=0.224 Sum_probs=55.8
Q ss_pred cccEEEEcCCeEEEEEEEeeecCCceEEEECC--ee------------cCCCCce--EEEEcCCeEEEEEcCceecCCce
Q psy7039 362 IRDMTVLAGEEFTITVPFSGRPKPTPIWTVNG--DE------------VSPDGRI--KFETSENQTIYRNKSAKRATDSG 425 (516)
Q Consensus 362 ~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~--~~------------l~~~~~~--~~~~~~~~~~l~i~~~~~~~~~g 425 (516)
+..+.+.+|+.++|.|...+. ...+.|++.. .. .....++ ..........|+|.++.+ +|+|
T Consensus 7 P~~~~~~~G~svtl~C~~s~~-~~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~-~Dsa 84 (115)
T d1ogad1 7 PQFLSIQEGENLTVYCNSSSV-FSSLQWYRQEPGEGPVLLVTVVTGGEVKKLKRLTFQFGDARKDSSLHITAAQP-GDTG 84 (115)
T ss_dssp CSEEEEETTCCEEEEEECSSC-CSCEEEEEECTTSCCEEEEEECSTTCEEEETTEEEEECTTSSEEEEEESSCCG-GGCE
T ss_pred CCeEEECCCCCEEEEEEECCC-CceEEEEecCCCCceeeeeeeeecccceeecccccccccccceeeeeecCCCc-ccee
Confidence 456789999999999997654 3368898731 10 0111233 333345567899999999 9999
Q ss_pred EEEEEEEcCCCce--eEEEEEEEec
Q psy7039 426 SYTIQLVNTVGSD--SASCKVYVVD 448 (516)
Q Consensus 426 ~y~c~a~n~~G~~--s~s~~l~v~~ 448 (516)
.|.|.+....+.. ..-..|+|+.
T Consensus 85 ~YyCa~~~~~~~~~FG~GT~LtV~~ 109 (115)
T d1ogad1 85 LYLCAGAGSQGNLIFGKGTKLSVKP 109 (115)
T ss_dssp EEEEEEECTTSSEEECCCEEEEEEC
T ss_pred eEcccccCCCCCcEECCCEEEEEec
Confidence 9999887554331 1225677763
|
| >d1mqkl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=97.37 E-value=0.00038 Score=52.80 Aligned_cols=71 Identities=23% Similarity=0.142 Sum_probs=53.8
Q ss_pred cccEEEEcCCeEEEEEEEeeecCCceEEEECC--ee---c---------CCCCceEEEEcCCeEEEEEcCceecCCceEE
Q psy7039 362 IRDMTVLAGEEFTITVPFSGRPKPTPIWTVNG--DE---V---------SPDGRIKFETSENQTIYRNKSAKRATDSGSY 427 (516)
Q Consensus 362 ~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~--~~---l---------~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y 427 (516)
+..+.+.+|+.++|.|.........+.|++.. .. + ....++..........|.|.++.+ +|+|.|
T Consensus 8 P~~l~~~~G~svtL~C~~s~~~~~~i~WYrQ~pg~~p~~li~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~-~DSa~Y 86 (109)
T d1mqkl_ 8 PVSLSASVGETVTITCRASENIYSYLAWYQQKQGKSPQFLVYNAKTLGEGVPSRFSGSGSGTQFSLKINSLLP-EDFGSY 86 (109)
T ss_dssp CSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCG-GGCEEE
T ss_pred CCEEEECCCCCEEEEEEeCCCcCcccceeeccccCCCeEEEEeeccccCCcCCCEEEeccCCEEEEEEccccc-cCCeeE
Confidence 45677889999999999875555569999731 10 0 123567776677788999999999 999999
Q ss_pred EEEEEc
Q psy7039 428 TIQLVN 433 (516)
Q Consensus 428 ~c~a~n 433 (516)
.|.+..
T Consensus 87 yCA~~~ 92 (109)
T d1mqkl_ 87 YCQHHY 92 (109)
T ss_dssp EEEECS
T ss_pred EEeeeC
Confidence 998763
|
| >d1ogad1 b.1.1.1 (D:3-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), alpha-chain [TaxId: 9606]
Probab=97.36 E-value=0.00041 Score=53.22 Aligned_cols=84 Identities=14% Similarity=0.144 Sum_probs=51.3
Q ss_pred CcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCc--CceeeEEeeCCeeeccCCceEE--eecCC
Q psy7039 119 STLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSE--PFLNHGWSINGQVCQIGGRADV--QTTKS 194 (516)
Q Consensus 119 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--p~~~i~W~~~~~~~~~~~~~~~--~~~~~ 194 (516)
..|..+.+.+|++++|.|.... ....+-|++... ...-+.+...........++.. .....
T Consensus 5 Q~P~~~~~~~G~svtl~C~~s~---------------~~~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~ 69 (115)
T d1ogad1 5 QSPQFLSIQEGENLTVYCNSSS---------------VFSSLQWYRQEPGEGPVLLVTVVTGGEVKKLKRLTFQFGDARK 69 (115)
T ss_dssp EECSEEEEETTCCEEEEEECSS---------------CCSCEEEEEECTTSCCEEEEEECSTTCEEEETTEEEEECTTSS
T ss_pred eCCCeEEECCCCCEEEEEEECC---------------CCceEEEEecCCCCceeeeeeeeecccceeecccccccccccc
Confidence 3456688999999999998761 112345555321 1111222222222222334433 33455
Q ss_pred eeEEEeccCCCCCCeeEEEEEEc
Q psy7039 195 ETVLDIPFCSRSDTGHYSLTLEN 217 (516)
Q Consensus 195 ~~~l~i~~~~~~d~g~Y~c~~~~ 217 (516)
...|.|.+++.+|+|.|.|.+..
T Consensus 70 ~~~L~I~~~~~~Dsa~YyCa~~~ 92 (115)
T d1ogad1 70 DSSLHITAAQPGDTGLYLCAGAG 92 (115)
T ss_dssp EEEEEESSCCGGGCEEEEEEEEC
T ss_pred eeeeeecCCCccceeeEcccccC
Confidence 77999999999999999998764
|
| >d2rhea_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain lambda variable domain, VL-lambda species: Human (Homo sapiens), cluster 2 [TaxId: 9606]
Probab=97.36 E-value=0.00032 Score=53.60 Aligned_cols=82 Identities=13% Similarity=0.099 Sum_probs=49.1
Q ss_pred cceEEecCCeEEEEEeeeeccccccCcccccccc-ccCccceeecCcCceeeEEee---CCeeeccCCceEEeecCCeeE
Q psy7039 122 NDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVR-ANSTKGWVKLSEPFLNHGWSI---NGQVCQIGGRADVQTTKSETV 197 (516)
Q Consensus 122 ~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~p~~~i~W~~---~~~~~~~~~~~~~~~~~~~~~ 197 (516)
..+.+.+|++++|.|...+ .. ....+-|+.. .|.....|.. ....-....++..........
T Consensus 8 ps~~v~~G~svtL~C~~s~-------------~~~~~~~~~WYrQ-~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (114)
T d2rhea_ 8 PSASGTPGQRVTISCTGSA-------------TDIGSNSVIWYQQ-VPGKAPKLLIYYNDLLPSGVSDRFSASKSGTSAS 73 (114)
T ss_dssp SEEEECTTCCEEEEEECCT-------------TTTTTSCEEEEEC-CTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEE
T ss_pred CcEEeCCCCCEEEEEEECC-------------ccccCCcccceee-ecccceEEEEEEeeeeccCCCCcceecCCCCeee
Confidence 3588999999999998761 00 1122334432 1111111111 111111235666666677889
Q ss_pred EEeccCCCCCCeeEEEEEEc
Q psy7039 198 LDIPFCSRSDTGHYSLTLEN 217 (516)
Q Consensus 198 l~i~~~~~~d~g~Y~c~~~~ 217 (516)
|.|.+++.+|++.|.|....
T Consensus 74 L~I~~v~~~DsA~YyCA~~~ 93 (114)
T d2rhea_ 74 LAISGLESEDEADYYCAAWN 93 (114)
T ss_dssp EEESSCCGGGCEEEEEEEEE
T ss_pred eEecccCcccCceEEEeecC
Confidence 99999999999999998753
|
| >d2gsia1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]
Probab=97.36 E-value=0.00083 Score=51.01 Aligned_cols=72 Identities=15% Similarity=0.154 Sum_probs=52.5
Q ss_pred cccEEEEcCCeEEEEEEEeee-c---CCceEEEEC--Cee------------cCCCCceEEEEcCCeEEEEEcCceecCC
Q psy7039 362 IRDMTVLAGEEFTITVPFSGR-P---KPTPIWTVN--GDE------------VSPDGRIKFETSENQTIYRNKSAKRATD 423 (516)
Q Consensus 362 ~~~~~v~~g~~~~l~C~~~g~-p---~~~i~W~~~--~~~------------l~~~~~~~~~~~~~~~~l~i~~~~~~~~ 423 (516)
+..+.+.+|+.++|.|..... . ...+.|++. +.. .....+|..........|+|.++.+ +|
T Consensus 8 P~s~s~~~G~svtL~C~~s~~~~~~~~~~i~WYrQ~pg~~~~~li~~~~~~~~g~~~rfs~~~~~~~~~L~I~~~~~-~D 86 (111)
T d2gsia1 8 PASLAVSLGQPATISCGASKSVRTSGYSYMDWNQQKPGQPPRRLIYLVSNLESGVPARFSGSGSGTDFTLNIHPVEE-ED 86 (111)
T ss_dssp CSEEEEETTSCEEEEEEESSCCCCSSSCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCG-GG
T ss_pred CCEEEECCCCCEEEEEEECCCCccCCccceEEEEECCCCccEEEEEccCccCCCcCCcEEEecCCCchhcccccccc-cC
Confidence 456788999999999987432 1 124889873 111 1123577777777788999999999 99
Q ss_pred ceEEEEEEEcC
Q psy7039 424 SGSYTIQLVNT 434 (516)
Q Consensus 424 ~g~y~c~a~n~ 434 (516)
++.|.|.+...
T Consensus 87 sA~YyCa~~~~ 97 (111)
T d2gsia1 87 AATYYCSHIRE 97 (111)
T ss_dssp CEEEEEEECSS
T ss_pred CceEEEEECCC
Confidence 99999987644
|
| >d1x4ya1 b.1.2.1 (A:8-108) Brother of CDO precursor (BOC) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Brother of CDO precursor (BOC) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.36 E-value=0.00036 Score=52.05 Aligned_cols=91 Identities=14% Similarity=0.089 Sum_probs=59.9
Q ss_pred ceeeeccCCeeEEEecCC-CCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceE
Q psy7039 325 IDYTTVTPESVSMSWKPP-VDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIK 403 (516)
Q Consensus 325 ~~~~~~~~~~~~l~W~~p-~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~ 403 (516)
+.+..++.+++.|+|++| ....+.+|.+|. +.+...+..- ......
T Consensus 8 ~~~~~~s~tsi~v~W~~~~~~~~~~~i~~Y~--------------------------------v~y~~~~~~~-~~~~~~ 54 (101)
T d1x4ya1 8 TFTDAVNETTIMLKWMYIPASNNNTPIHGFY--------------------------------IYYRPTDSDN-DSDYKK 54 (101)
T ss_dssp EEEECSSSSCEEEEEECCCTTSCCCCCCEEE--------------------------------EEECCTTSCS-GGGCCC
T ss_pred cEEEEEcCCEEEEEEecCcccccccceEEEE--------------------------------EEeeecccee-eeeeeE
Confidence 778889999999999864 455556677762 1121111110 011111
Q ss_pred EEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEEEEecC
Q psy7039 404 FETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDK 449 (516)
Q Consensus 404 ~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~v~~~ 449 (516)
.........+.|.+|.+ ...|.|++.|.|..|.+..+..+.+.++
T Consensus 55 ~~~~~~~~~~~i~~L~p-~t~Y~~~v~a~n~~G~s~~S~~~~~~T~ 99 (101)
T d1x4ya1 55 DMVEGDRYWHSISHLQP-ETSYDIKMQCFNEGGESEFSNVMICETK 99 (101)
T ss_dssp EEEETTCCEEEECSCCT-TCEEEEEEEEECTTCCCCCCCCEEEECC
T ss_pred EEEcCCeeEEEEcCCCC-CCEEEEEEEEEcCCCCCCCCCcEEEEcc
Confidence 22334455789999999 9999999999999998777766666543
|
| >d2cdea1 b.1.1.1 (A:2-115) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=97.33 E-value=0.0003 Score=53.93 Aligned_cols=74 Identities=16% Similarity=0.288 Sum_probs=52.7
Q ss_pred cccEEEEcCCeEEEEEEEeeecCCceEEEECCe--e------------cCCCCceEEEE--cCCeEEEEEcCceecCCce
Q psy7039 362 IRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGD--E------------VSPDGRIKFET--SENQTIYRNKSAKRATDSG 425 (516)
Q Consensus 362 ~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~--~------------l~~~~~~~~~~--~~~~~~l~i~~~~~~~~~g 425 (516)
+..+.+.+|+.++|.|.........+.|++... . .....++.... .....+|+|.++.. +|+|
T Consensus 7 P~~~~~~~G~~vtL~C~~~~~~~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~sL~i~~~~~-~Dsg 85 (114)
T d2cdea1 7 PQSLIILEGKNCTLQCNYTVSPFSNLRWYKQDTGRGPVSLTIMTFSENTKSNGRYTATLDADTKQSSLHITASQL-SDSA 85 (114)
T ss_dssp CSEEEEETTCCCEEEEEECCSCCSEEEEEEECTTSCCCEEEEECSSCSCEEETTEEECBCSSSSEEEEEECSCCG-GGCS
T ss_pred CCEEEEeCCCCEEEEEEEcCCCccCceEEEecCCCceEEeeeeeeeecccccCccceeecCcccccccEEcccCh-hhCc
Confidence 466789999999999998766666799997321 0 00122343322 23456899999999 9999
Q ss_pred EEEEEEEcCCC
Q psy7039 426 SYTIQLVNTVG 436 (516)
Q Consensus 426 ~y~c~a~n~~G 436 (516)
.|.|.+....+
T Consensus 86 ~Y~Ca~~~~~~ 96 (114)
T d2cdea1 86 SYICVVSDRGS 96 (114)
T ss_dssp EEEEEEECSCT
T ss_pred ccceeeecCCC
Confidence 99999987543
|
| >d1akjd_ b.1.1.1 (D:) CD8 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD8 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.33 E-value=0.0002 Score=54.96 Aligned_cols=73 Identities=14% Similarity=0.110 Sum_probs=53.3
Q ss_pred ccccEEEEcCCeEEEEEEEeeec-CCceEEEECCe--e------c------------CCCCceEEEEcCCeEEEEEcCce
Q psy7039 361 SIRDMTVLAGEEFTITVPFSGRP-KPTPIWTVNGD--E------V------------SPDGRIKFETSENQTIYRNKSAK 419 (516)
Q Consensus 361 ~~~~~~v~~g~~~~l~C~~~g~p-~~~i~W~~~~~--~------l------------~~~~~~~~~~~~~~~~l~i~~~~ 419 (516)
.+.+..+.+|++++|.|.+.... ...+.|++... . + ....++......+...|+|.++.
T Consensus 6 sP~~~t~~~G~~vtL~C~~~~~~~~~~i~WyrQ~~g~~~~~~~~i~~~~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~l~ 85 (114)
T d1akjd_ 6 SPLDRTWNLGETVELKCQVLLSNPTSGCSWLFQPRGAAASPTFLLYLSQNKPKAAEGLDTQRFSGKRLGDTFVLTLSDFR 85 (114)
T ss_dssp ECCSCCCCTTCCEEEEEEECCSSCCSCEEEEEECSSTTCCCEEEEEESSSCCEECTTCCTTTEEEEEETTEEEEEESSCC
T ss_pred CCCcEeccCCCcEEEEEEeCCCcCCCCEEEEEECCCCCcEEEEEEecCCCeeEcCCCCCCcEEEEECCCCChhcEEccCC
Confidence 34556788999999999986543 34689987321 0 0 01246666767777899999999
Q ss_pred ecCCceEEEEEEEcC
Q psy7039 420 RATDSGSYTIQLVNT 434 (516)
Q Consensus 420 ~~~~~g~y~c~a~n~ 434 (516)
+ +|+|.|.|.+...
T Consensus 86 ~-~Dsg~YyCa~~~~ 99 (114)
T d1akjd_ 86 R-ENEGYYFCSALSN 99 (114)
T ss_dssp G-GGCEEEEEEEEET
T ss_pred C-CCCEEEeEeEcCC
Confidence 9 9999999998743
|
| >d1qg3a1 b.1.2.1 (A:1126-1217) Integrin beta-4 subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Integrin beta-4 subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.33 E-value=0.00025 Score=51.96 Aligned_cols=83 Identities=11% Similarity=0.082 Sum_probs=54.9
Q ss_pred ceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEE
Q psy7039 325 IDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKF 404 (516)
Q Consensus 325 ~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~ 404 (516)
+.+..++.+++.|+|++|... +.+|. +.|...+.. .....
T Consensus 8 ~~~~~~s~~si~l~W~~p~~~----~~~Y~--------------------------------i~y~~~~~~----~~~~~ 47 (92)
T d1qg3a1 8 PNAKAAGSRKIHFNWLPPSGK----PMGYR--------------------------------VKYWIQGDS----ESEAH 47 (92)
T ss_dssp EEEEECSTTCEEEEEECCSSC----CCEEE--------------------------------EEEEETTSC----GGGCE
T ss_pred CEEEEccCCEEEEEEEecCCC----ccceE--------------------------------Eeeeecccc----ccEEE
Confidence 778888999999999998542 33331 222222211 11111
Q ss_pred EEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEEEEec
Q psy7039 405 ETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVD 448 (516)
Q Consensus 405 ~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~v~~ 448 (516)
........+.|.+|.+ +..|.|++.|.|..|.+..+..+.+++
T Consensus 48 ~~~~~~~~~~i~~L~p-~t~Y~~~V~A~n~~G~g~~S~~~~~~T 90 (92)
T d1qg3a1 48 LLDSKVPSVELTNLYP-YCDYEMKVCAYGAQGEGPYSSLVSCRT 90 (92)
T ss_dssp EEEESSSEEEECSCCT-TCEEEEEEEEECSSCBCCCCCCEEEEC
T ss_pred EecCCccEEEECCCCC-CcEEEEEEEEEeCCcCcCCCCCEEEEc
Confidence 1222334689999999 999999999999999877666666654
|
| >d1qfoa_ b.1.1.1 (A:) N-terminal domain of sialoadhesin {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: N-terminal domain of sialoadhesin species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.33 E-value=0.00023 Score=54.79 Aligned_cols=92 Identities=15% Similarity=0.088 Sum_probs=48.7
Q ss_pred cccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCee-e--ccCCceEEee--cCC
Q psy7039 120 TLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQV-C--QIGGRADVQT--TKS 194 (516)
Q Consensus 120 ~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~-~--~~~~~~~~~~--~~~ 194 (516)
.|..+.+.+|+.+.|.|.+. .|.. ........+-|.+.........-...... . ....|+.+.. ...
T Consensus 6 ~P~~v~~~~G~~V~l~C~f~-------~p~~-~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 77 (118)
T d1qfoa_ 6 SPKNVQGLSGSCLLIPCIFS-------YPAD-VPVSNGITAIWYYDYSGKRQVVIHSGDPKLVDKRFRGRAELMGNMDHK 77 (118)
T ss_dssp CCSEEEEETTSCEEECCEEE-------CCTT-SCC--CCEEEEEESTTTTCEEEEESSCGGGSCTTTTTTEEECSCGGGT
T ss_pred CCCEEEEecCCcEEEEEEEe-------eccC-CCCcceEEEEEEeeceeccceeeeeccccccccccCCCeEEEEeCcCC
Confidence 45668899999999999987 1110 00111111223332111111111111110 0 1124454442 234
Q ss_pred eeEEEeccCCCCCCeeEEEEEEcCC
Q psy7039 195 ETVLDIPFCSRSDTGHYSLTLENNL 219 (516)
Q Consensus 195 ~~~l~i~~~~~~d~g~Y~c~~~~~~ 219 (516)
..+|.|.+++.+|+|.|.|.+....
T Consensus 78 ~~sL~I~~v~~~DsG~Y~C~v~~~~ 102 (118)
T d1qfoa_ 78 VCNLLLKDLKPEDSGTYNFRFEISD 102 (118)
T ss_dssp BCCEEECSCCGGGCEEEEEEEECC-
T ss_pred EEEEEECCCChhHCEEEEEEEEeCC
Confidence 6689999999999999999987543
|
| >d1hkfa_ b.1.1.1 (A:) NK cell activating receptor NKP44 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: NK cell activating receptor NKP44 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.33 E-value=0.00099 Score=50.33 Aligned_cols=73 Identities=12% Similarity=0.198 Sum_probs=49.6
Q ss_pred ccEEEEcCCeEEEEEEEeeecC--CceEEEECCe--e------------cCCCCceEEEE--cCCeEEEEEcCceecCCc
Q psy7039 363 RDMTVLAGEEFTITVPFSGRPK--PTPIWTVNGD--E------------VSPDGRIKFET--SENQTIYRNKSAKRATDS 424 (516)
Q Consensus 363 ~~~~v~~g~~~~l~C~~~g~p~--~~i~W~~~~~--~------------l~~~~~~~~~~--~~~~~~l~i~~~~~~~~~ 424 (516)
+.+.+.+|+.++|.|....... ..+.|++... . .....++.+.. ..+...|.|.++.+ .|+
T Consensus 4 ~~v~~~~G~svtl~C~~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~l~~-~Ds 82 (108)
T d1hkfa_ 4 QVLQSVAGQTLTVRCQYPPTGSLYEKKGWCKEASALVCIRLVTSSKPRTMAWTSRFTIWDDPDAGFFTVTMTDLRE-EDS 82 (108)
T ss_dssp EEEEECTTCCEEEEEECCCCTTCCCEEEEEEEEETTEEEEEEEECSTTCCBCSTTEEEEEETTTTEEEEEECSCCG-GGC
T ss_pred EEEEEcCCCCEEEEEEECCCCCCCCEEEEEEeCCCCCcEEeeeccCccccceeeeEeeeeeCCCCEEEEEEhhhCC-CCC
Confidence 4577889999999998754432 3567986321 0 01123444332 34567899999999 999
Q ss_pred eEEEEEEEcCCC
Q psy7039 425 GSYTIQLVNTVG 436 (516)
Q Consensus 425 g~y~c~a~n~~G 436 (516)
|.|.|.+.....
T Consensus 83 G~Y~C~v~~~~~ 94 (108)
T d1hkfa_ 83 GHYWCRIYRPSD 94 (108)
T ss_dssp EEEEEEEECTTT
T ss_pred EEEEEEEecCCC
Confidence 999999875543
|
| >d1rzfl1 b.1.1.1 (L:2-108) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain lambda variable domain, VL-lambda species: Human (Homo sapiens), cluster 2 [TaxId: 9606]
Probab=97.32 E-value=0.001 Score=50.47 Aligned_cols=71 Identities=13% Similarity=0.109 Sum_probs=52.9
Q ss_pred ccEEEEcCCeEEEEEEEeeec--CCceEEEECC--e------------ecCCCCceEEEEcCCeEEEEEcCceecCCceE
Q psy7039 363 RDMTVLAGEEFTITVPFSGRP--KPTPIWTVNG--D------------EVSPDGRIKFETSENQTIYRNKSAKRATDSGS 426 (516)
Q Consensus 363 ~~~~v~~g~~~~l~C~~~g~p--~~~i~W~~~~--~------------~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~ 426 (516)
..+.+.+|+.++|.|...+.. ...+.|++.. . ......++....+.....|.|.++.+ +|++.
T Consensus 8 ~s~~v~~G~svtl~C~~s~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~-~Dsa~ 86 (111)
T d1rzfl1 8 PSVSAAPGQKVTISCSGSSSNIGNNDVSWYQQFPGTVPKLVIYENNERPSGIPDRFSGSKSGTSATLGITGLQT-GDEAD 86 (111)
T ss_dssp SEEEECTTSCEEEEEECCCCCCCTSCEEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEESSCCG-GGCSE
T ss_pred cceEeCCCCCEEEEEEECCcCCcCCcccceeeecccceEEEeeecCCCccccccceeeeCCCCEeeeEEeeecc-ccCcc
Confidence 457889999999999875432 3358998631 1 11123567777777778999999999 99999
Q ss_pred EEEEEEcC
Q psy7039 427 YTIQLVNT 434 (516)
Q Consensus 427 y~c~a~n~ 434 (516)
|.|.+...
T Consensus 87 YyCA~~~~ 94 (111)
T d1rzfl1 87 YYCGTWDS 94 (111)
T ss_dssp EEEEEEET
T ss_pred eEEeecCC
Confidence 99988754
|
| >d1w72l1 b.1.1.1 (L:1-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain lambda variable domain, VL-lambda species: Human (Homo sapiens), cluster 5 [TaxId: 9606]
Probab=97.32 E-value=0.0009 Score=50.55 Aligned_cols=71 Identities=15% Similarity=0.141 Sum_probs=52.9
Q ss_pred ccEEEEcCCeEEEEEEEeeecCCceEEEECC--ee------------cCCCCceEEEEcCCeEEEEEcCceecCCceEEE
Q psy7039 363 RDMTVLAGEEFTITVPFSGRPKPTPIWTVNG--DE------------VSPDGRIKFETSENQTIYRNKSAKRATDSGSYT 428 (516)
Q Consensus 363 ~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~--~~------------l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~ 428 (516)
..+.+.+|+.++|.|.........+.|++.. .. .....++..........|.|.++++ +|++.|.
T Consensus 8 ~sl~~~~G~svtl~C~~~~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~-~DsavYy 86 (109)
T d1w72l1 8 PSVSVAPGQTARITCGGNNIGSRSVHWYQQKPGQAPVLVVYDDSDRPSGIPERFSGSNSGNMATLTISRVEA-GDEADYY 86 (109)
T ss_dssp SEEEECTTSCEEEEEECTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCG-GGCEEEE
T ss_pred CeEEECCCCCEEEEEEcCCCCCcceeeeeccccceeEEEEEccccCCCceeeeEeeecCCCccceEEeeecc-CCCEEEE
Confidence 3578899999999999755444568998631 11 0123466666677778999999999 9999999
Q ss_pred EEEEcC
Q psy7039 429 IQLVNT 434 (516)
Q Consensus 429 c~a~n~ 434 (516)
|.+...
T Consensus 87 CA~~~~ 92 (109)
T d1w72l1 87 CQVWDS 92 (109)
T ss_dssp EEEEET
T ss_pred EEecCC
Confidence 998754
|
| >d1neua_ b.1.1.1 (A:) Myelin membrane adhesion molecule P0 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Myelin membrane adhesion molecule P0 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.32 E-value=0.00024 Score=54.99 Aligned_cols=85 Identities=16% Similarity=0.262 Sum_probs=53.4
Q ss_pred cccEEEEcCCeEEEEEEEeee----cCCceEEEECCee------c----------C----CCCceEEE--EcCCeEEEEE
Q psy7039 362 IRDMTVLAGEEFTITVPFSGR----PKPTPIWTVNGDE------V----------S----PDGRIKFE--TSENQTIYRN 415 (516)
Q Consensus 362 ~~~~~v~~g~~~~l~C~~~g~----p~~~i~W~~~~~~------l----------~----~~~~~~~~--~~~~~~~l~i 415 (516)
+..+.+..|++++|.|.+... ....+.|++.... + . ...++.+. ...+..+|.|
T Consensus 6 p~~v~a~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I 85 (119)
T d1neua_ 6 DREVYGAVGSQVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYIDEVGTFKERIQWVGDPSWKDGSIVI 85 (119)
T ss_dssp CSEEEEETTSCEEECCEEECSSCCCSCCEEEEEEEETTCCCCEEEEEEETTEEEECSSSTTTTCEEECCBGGGTBCCEEE
T ss_pred CCeEEEeeCCCEEEEEEEEecCCCCccEEEEEEEecccCCceeEEEEEeecccccccCccceeEEEEEEECCCCEEEEEE
Confidence 456788999999999997532 2337899863210 0 0 01233332 1233457999
Q ss_pred cCceecCCceEEEEEEEcCCCc--eeEEEEEEEe
Q psy7039 416 KSAKRATDSGSYTIQLVNTVGS--DSASCKVYVV 447 (516)
Q Consensus 416 ~~~~~~~~~g~y~c~a~n~~G~--~s~s~~l~v~ 447 (516)
.++.. .|+|.|.|.+.+..+. ......|.|.
T Consensus 86 ~~v~~-~DsG~Y~C~v~~~~~~~~~~~~v~L~V~ 118 (119)
T d1neua_ 86 HNLDY-SDNGTFTCDVKNPPDIVGKTSQVTLYVF 118 (119)
T ss_dssp CSCCG-GGCEEEEEEEEC----CCEEEEEEEEEE
T ss_pred CCCCh-HHCEEEEEEEEECCCcCceEEEEEEEEE
Confidence 99999 9999999999986543 3444566654
|
| >d2aq2a1 b.1.1.1 (A:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), beta-chain [TaxId: 10090]
Probab=97.31 E-value=0.00051 Score=52.23 Aligned_cols=84 Identities=8% Similarity=0.039 Sum_probs=48.5
Q ss_pred CcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecC--cCceeeE-EeeCCeeecc--CCc-eEEeec
Q psy7039 119 STLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLS--EPFLNHG-WSINGQVCQI--GGR-ADVQTT 192 (516)
Q Consensus 119 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~p~~~i~-W~~~~~~~~~--~~~-~~~~~~ 192 (516)
..|..+.+.+|++++|.|...+ ....+-|++.. ...-.+. ....+..... ..+ ......
T Consensus 6 Q~P~~~~~~~G~~vtl~C~~s~---------------~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~ 70 (110)
T d2aq2a1 6 QSPRNKVAVTGEKVTLSCQQTN---------------NHNNMYWYRQDTGHGLRLIHYSYGVGNTEKGDIPDGYEASRPS 70 (110)
T ss_dssp EECSEEEECTTCCEEEEEEESS---------------CCSEEEEEEECTTSCEEEEEEESSTTCCEECSCCTTCEEEEEE
T ss_pred EeCCeEEEcCCCCEEEEEEECC---------------CcCcEEEEEEcccCCceEEEEEeecCCcccCCCCCCEEEEecc
Confidence 4466788999999999998761 11224454431 1111111 1111111111 122 233345
Q ss_pred CCeeEEEeccCCCCCCeeEEEEEEc
Q psy7039 193 KSETVLDIPFCSRSDTGHYSLTLEN 217 (516)
Q Consensus 193 ~~~~~l~i~~~~~~d~g~Y~c~~~~ 217 (516)
.....|.|.+++.+|+|.|.|....
T Consensus 71 ~~~~~L~I~~~~~~Dsa~YyCa~~~ 95 (110)
T d2aq2a1 71 QEQFSLILESATPSQTSVYFCASGG 95 (110)
T ss_dssp TTEEEEEESSCCGGGCEEEEEEEEE
T ss_pred CCEEEEEECCCCHhhCEEEEEeeCC
Confidence 5678999999999999999998653
|
| >d1n4xl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]
Probab=97.29 E-value=0.00038 Score=53.17 Aligned_cols=89 Identities=12% Similarity=0.064 Sum_probs=52.7
Q ss_pred CcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecC-cCceeeEEeeCCe-eeccCCceEEeecCCee
Q psy7039 119 STLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLS-EPFLNHGWSINGQ-VCQIGGRADVQTTKSET 196 (516)
Q Consensus 119 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~p~~~i~W~~~~~-~~~~~~~~~~~~~~~~~ 196 (516)
..|..+.+.+|++++|.|...+.. ........+.|+... ...+.+..+.... ......++.....+...
T Consensus 7 Q~P~s~~~~~G~svtl~C~~s~~~---------~~~~~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~fs~~~~~~~~ 77 (113)
T d1n4xl_ 7 QTPLYLPVSLGDQASISCRSSQTI---------VHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDF 77 (113)
T ss_dssp EECSEEEECTTCCEEEEEEESSCC---------CCTTSCCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEECSSEE
T ss_pred CcCCEEEECCCCCEEEEEEecccc---------ccCCCceEeEEEecCCCCccEEEEEecCCCccccCCCeeeeccCCcc
Confidence 345678899999999999876100 000111234454431 1122222222111 11223567666667778
Q ss_pred EEEeccCCCCCCeeEEEEEE
Q psy7039 197 VLDIPFCSRSDTGHYSLTLE 216 (516)
Q Consensus 197 ~l~i~~~~~~d~g~Y~c~~~ 216 (516)
.|.|.+++.+|+|.|.|...
T Consensus 78 ~L~I~~~~~~DsavYyCa~~ 97 (113)
T d1n4xl_ 78 TLKISRVEAEDLGIYYCFQG 97 (113)
T ss_dssp EEEESSCCGGGCEEEEEEEC
T ss_pred cCccCCCCcccCEEEEEEEC
Confidence 99999999999999999643
|
| >d1yqvl1 b.1.1.1 (L:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=97.29 E-value=0.00067 Score=50.92 Aligned_cols=70 Identities=19% Similarity=0.111 Sum_probs=50.8
Q ss_pred cccEEEEcCCeEEEEEEEeeecCCceEEEECCe--e------------cCCCCceEEEEcCCeEEEEEcCceecCCceEE
Q psy7039 362 IRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGD--E------------VSPDGRIKFETSENQTIYRNKSAKRATDSGSY 427 (516)
Q Consensus 362 ~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~--~------------l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y 427 (516)
+..+.+.+|++++|.|..... ...+.|++... . -....++..........|.|.++.. +|++.|
T Consensus 7 P~~l~~~~G~~vtl~C~~s~~-~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~-~Dsa~Y 84 (104)
T d1yqvl1 7 PAIMSASPGEKVTMTCSASSS-VNYMYWYQQKSGTSPKRWIYDTSKLASGVPVRFSGSGSGTSYSLTISSMET-EDAATY 84 (104)
T ss_dssp SSEEEECTTCCEEEEEEESSC-CSCCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCG-GGCEEE
T ss_pred CCeEEECCCCCEEEEEEeCCC-CCccEEEEeeccCceEEEEecccccCCCcCceEEEecCCCEEEEEecccCc-ccCCeE
Confidence 456788999999999986433 33578987321 0 0123456666667778999999999 999999
Q ss_pred EEEEEc
Q psy7039 428 TIQLVN 433 (516)
Q Consensus 428 ~c~a~n 433 (516)
.|.+..
T Consensus 85 yCa~~~ 90 (104)
T d1yqvl1 85 YCQQWG 90 (104)
T ss_dssp EEEECS
T ss_pred EEEecC
Confidence 997643
|
| >d1nezg_ b.1.1.1 (G:) CD8 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD8 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.28 E-value=0.00036 Score=54.17 Aligned_cols=72 Identities=10% Similarity=0.206 Sum_probs=51.4
Q ss_pred ccccEEEEcCCeEEEEEEEeeecCCceEEEEC--Ceec----------------------CCCCceEEE-EcCCeEEEEE
Q psy7039 361 SIRDMTVLAGEEFTITVPFSGRPKPTPIWTVN--GDEV----------------------SPDGRIKFE-TSENQTIYRN 415 (516)
Q Consensus 361 ~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~--~~~l----------------------~~~~~~~~~-~~~~~~~l~i 415 (516)
.++.+.+.+|++++|.|.+.+.....+.|++. +..+ ....++... ..+....|+|
T Consensus 7 ~P~~~~~~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~L~I 86 (122)
T d1nezg_ 7 FPKKMDAELGQKVDLVCEVLGSVSQGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLFSAMRDTNNKYVLTL 86 (122)
T ss_dssp ESSCEEECTTCCEEEEEEEESCCSSCEEEEEEESSCSSCCCEEEEEECSSSCCEEECTTTTGGGTEEEEEETTTEEEEEE
T ss_pred cCCEEEECCCCCEEEEEEEcCccCCCEEEEEECCCCCcCceEEEEeeeccccceeeccCCCCCcEEEEECCCCCEeEEEE
Confidence 35667889999999999998877778999872 1110 001233332 2344568999
Q ss_pred cCceecCCceEEEEEEEc
Q psy7039 416 KSAKRATDSGSYTIQLVN 433 (516)
Q Consensus 416 ~~~~~~~~~g~y~c~a~n 433 (516)
.++.. +|+|.|.|.+..
T Consensus 87 ~~~~~-~Dsg~YyCa~~~ 103 (122)
T d1nezg_ 87 NKFSK-ENEGYYFCSVIS 103 (122)
T ss_dssp SSCCG-GGCEEEEEEEEE
T ss_pred ccccc-CCCEEEEeeEeC
Confidence 99999 999999998763
|
| >d1ncwl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]
Probab=97.28 E-value=0.00051 Score=52.32 Aligned_cols=88 Identities=15% Similarity=0.130 Sum_probs=49.5
Q ss_pred cccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecC--cCceeeEEeeCCeeeccCCceEEeecCCeeE
Q psy7039 120 TLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLS--EPFLNHGWSINGQVCQIGGRADVQTTKSETV 197 (516)
Q Consensus 120 ~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~ 197 (516)
.|..+.+.+|++++|.|...... ..--...-+-|+... ...-.+.+...........++.....+....
T Consensus 7 sP~sls~~~G~svtl~C~~s~~~---------~~~~~~~~~~WYrQ~pg~~~~~l~~~~~~~~~g~~~~fs~~~~~~~~~ 77 (112)
T d1ncwl1 7 SPKTISVTIGQPASISCKSSQRL---------LNSNGKTFLNWLLQRPGQSPKRLIYLGTKLDSGVPDRFTGSGSGTDFT 77 (112)
T ss_dssp ECSEEEEETTSCEEEEEEESSCC---------BCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEE
T ss_pred cCCEEEECCCCCEEEEEEECccc---------ccCCCCcccEEEEcCCCCceEEEEeccCcCCCCcCceEEeeCCCCEEE
Confidence 35668899999999999865000 000001113344321 1111111111111111235666666667789
Q ss_pred EEeccCCCCCCeeEEEEEE
Q psy7039 198 LDIPFCSRSDTGHYSLTLE 216 (516)
Q Consensus 198 l~i~~~~~~d~g~Y~c~~~ 216 (516)
|.|.+++.+|++.|.|...
T Consensus 78 L~I~~~~~eDsAvYYC~~~ 96 (112)
T d1ncwl1 78 LKISRVEAEDLGVYYCWQG 96 (112)
T ss_dssp EEESSCCGGGCEEEEEEEC
T ss_pred EEECccccCcCEeEEEEcC
Confidence 9999999999999999643
|
| >d3cx5k1 b.1.1.1 (K:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=97.28 E-value=0.00014 Score=55.04 Aligned_cols=70 Identities=14% Similarity=0.073 Sum_probs=52.5
Q ss_pred cccEEEEcCCeEEEEEEEeeecCCceEEEECC--e------------ecCCCCceEEEEcCCeEEEEEcCceecCCceEE
Q psy7039 362 IRDMTVLAGEEFTITVPFSGRPKPTPIWTVNG--D------------EVSPDGRIKFETSENQTIYRNKSAKRATDSGSY 427 (516)
Q Consensus 362 ~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~--~------------~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y 427 (516)
+..+.+.+|++++|.|.........+.|++.. . ......+|..........|+|.++.+ +|++.|
T Consensus 8 P~s~~~~~G~~vtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~-~Dsa~Y 86 (107)
T d3cx5k1 8 PVSLAASLGDRVTISCRASQDINNFLNWYQQKPDGTIKLLIYYTSRLHAGVPSRFSGSGSGTDYSLTISNLEP-EDIATY 86 (107)
T ss_dssp STTCCBCSSSCCEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTCCCEEETTEEEEECSCCCS-CCCSEE
T ss_pred CCEEEECCCCCEEEEEEcCCCcCCCeEEEEcCCCCcceEEEEeecccCCCcCCCEEEEccCCEEEEEEeEeee-cCCCcE
Confidence 45567889999999999876656678999732 1 11123456666667778999999999 999999
Q ss_pred EEEEE
Q psy7039 428 TIQLV 432 (516)
Q Consensus 428 ~c~a~ 432 (516)
.|.+.
T Consensus 87 yCa~~ 91 (107)
T d3cx5k1 87 FCQHH 91 (107)
T ss_dssp EEEEC
T ss_pred EeeeC
Confidence 99764
|
| >d2fx7l1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 3.2 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Human (Homo sapiens), cluster 3.2 [TaxId: 9606]
Probab=97.27 E-value=0.00044 Score=52.36 Aligned_cols=71 Identities=14% Similarity=0.078 Sum_probs=52.6
Q ss_pred cccEEEEcCCeEEEEEEEeee-cCCceEEEECC--ee------------cCCCCceEEEEcCCeEEEEEcCceecCCceE
Q psy7039 362 IRDMTVLAGEEFTITVPFSGR-PKPTPIWTVNG--DE------------VSPDGRIKFETSENQTIYRNKSAKRATDSGS 426 (516)
Q Consensus 362 ~~~~~v~~g~~~~l~C~~~g~-p~~~i~W~~~~--~~------------l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~ 426 (516)
+..+.+.+|+.++|.|..... ....+.|++.. .. .....++..........|.|.++.+ +|+|.
T Consensus 8 P~~~~v~~G~tv~l~C~~~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~s~~~~~~~~~L~I~~~~~-~Dsa~ 86 (108)
T d2fx7l1 8 PGTQSLSPGERATLSCRASQSVGNNKLAWYQQRPGQAPRLLIYGASSRPSGVADRFSGSGSGTDFTLTISRLEP-EDFAV 86 (108)
T ss_dssp SSEEEECTTCCEEEEEEESSCCGGGCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCG-GGCSE
T ss_pred CCeEEECCCCCEEEEEEeecCCCCccceeEeccccCCCEEEEeeecccccCCccceeeecCCCEEEEEehHhee-cccEE
Confidence 456788999999999987544 23468898742 10 1123467777777778999999999 99999
Q ss_pred EEEEEEc
Q psy7039 427 YTIQLVN 433 (516)
Q Consensus 427 y~c~a~n 433 (516)
|.|.+.+
T Consensus 87 YyCa~~~ 93 (108)
T d2fx7l1 87 YYCQQYG 93 (108)
T ss_dssp EEEEECS
T ss_pred EeeecCC
Confidence 9998753
|
| >d1ucta2 b.1.1.4 (A:101-196) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Ig alpha Fc receptor, FCARI (CD89) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.27 E-value=0.00031 Score=51.84 Aligned_cols=65 Identities=14% Similarity=0.139 Sum_probs=46.7
Q ss_pred eEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEeecCCeeEEEeccC
Q psy7039 124 VKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFC 203 (516)
Q Consensus 124 ~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~ 203 (516)
-.|..|+.++|.|... ......+.|++++...... ....+....+.|.++
T Consensus 14 ~~V~~G~~VTL~C~~~--------------------------~~~~~~f~L~k~g~~~~~~----~~~~~~~a~F~l~~v 63 (96)
T d1ucta2 14 LVLMPGENISLTCSSA--------------------------HIPFDRFSLAKEGELSLPQ----HQSGEHPANFSLGPV 63 (96)
T ss_dssp SEECTTCCCEEEEECS--------------------------SSCCSEEEEEETTCSSCCS----EEECSSSEEEECCSC
T ss_pred CccCCCCeEEEEEeCC--------------------------CCCceEEEEEECCcccceE----EcCCCcccEEEEecc
Confidence 4688999999999764 2344567888877432211 112345578999999
Q ss_pred CCCCCeeEEEEEEcC
Q psy7039 204 SRSDTGHYSLTLENN 218 (516)
Q Consensus 204 ~~~d~g~Y~c~~~~~ 218 (516)
+.+|+|.|+|.....
T Consensus 64 ~~~~~G~Y~C~y~~~ 78 (96)
T d1ucta2 64 DLNVSGIYRCYGWYN 78 (96)
T ss_dssp CGGGCEEEEEEEECT
T ss_pred ccccCcEEEEEEEcC
Confidence 999999999998754
|
| >d1nfde1 b.1.1.1 (E:2-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain lambda variable domain, VL-lambda species: Hamster (Cricetulus griseus) [TaxId: 10029]
Probab=97.27 E-value=0.00093 Score=50.42 Aligned_cols=72 Identities=19% Similarity=0.183 Sum_probs=53.0
Q ss_pred cccEEEEcCCeEEEEEEEeeecCCceEEEEC--Cee----c--------CCCCceEEEEcCCeEEEEEcCceecCCceEE
Q psy7039 362 IRDMTVLAGEEFTITVPFSGRPKPTPIWTVN--GDE----V--------SPDGRIKFETSENQTIYRNKSAKRATDSGSY 427 (516)
Q Consensus 362 ~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~--~~~----l--------~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y 427 (516)
+..+.+.+|+.++|.|.........+.|++. |.. + ....+|..........|.|.++.+ +|++.|
T Consensus 6 P~s~~~~~G~svtl~C~~~~~~~~~i~WYrQ~~g~~p~~l~y~~~~~~~~~~~rf~~~~~~~~~~L~I~~l~~-~Dsa~Y 84 (108)
T d1nfde1 6 PSSASVTVGETVKITCSGDQLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTSGTTATLTISGAQP-EDEAAY 84 (108)
T ss_dssp CSEEEEETTSCCCEEEEETTGGGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCG-GGCSEE
T ss_pred CCeeEECCCCCEEEEEECCCCCCccEEEEecccccceeeeccccccccccccceeeecCCCCEeeeeEcCccc-cCCceE
Confidence 3457789999999999875444446889873 111 0 123467777777778999999999 999999
Q ss_pred EEEEEcC
Q psy7039 428 TIQLVNT 434 (516)
Q Consensus 428 ~c~a~n~ 434 (516)
.|.+...
T Consensus 85 yCA~~~~ 91 (108)
T d1nfde1 85 YCLSSYG 91 (108)
T ss_dssp EEEEEET
T ss_pred EEEeecC
Confidence 9987643
|
| >d1cd0a_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain lambda variable domain, VL-lambda species: Human (Homo sapiens), cluster 1 [TaxId: 9606]
Probab=97.26 E-value=0.00041 Score=52.88 Aligned_cols=85 Identities=14% Similarity=0.110 Sum_probs=49.0
Q ss_pred cccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEee--CCeee-ccCCceEEe--ecCC
Q psy7039 120 TLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSI--NGQVC-QIGGRADVQ--TTKS 194 (516)
Q Consensus 120 ~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~--~~~~~-~~~~~~~~~--~~~~ 194 (516)
.|..+.+.+|++++|.|...+ .--...-+.|++.. |.....|.. ..... ....++... ....
T Consensus 6 QP~s~sv~~G~svtL~C~~s~------------~~~~~~~i~WyrQ~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (111)
T d1cd0a_ 6 QPHSVSESPGKTVTISCTRSS------------GNIDSNYVQWYQQR-PGSAPITVIYEDNQRPSGVPDRFAGSIDRSSN 72 (111)
T ss_dssp CCSEEEECTTSCEEEEEEESS------------SCGGGSCCEEEEEC-TTSCCEEEEBTTTBCCTTSCTTEEEEEETTTT
T ss_pred cCCeeEECCCCCEEEEEEECC------------CCccCceEEEeeec-cCceeEeeeccccccCcccCCceeEeecCCCC
Confidence 345688999999999998761 00011224455432 111111111 11111 112444443 3455
Q ss_pred eeEEEeccCCCCCCeeEEEEEEc
Q psy7039 195 ETVLDIPFCSRSDTGHYSLTLEN 217 (516)
Q Consensus 195 ~~~l~i~~~~~~d~g~Y~c~~~~ 217 (516)
...|.|.+++.+|++.|.|....
T Consensus 73 ~~~L~i~~l~~~Dsa~YyCA~~~ 95 (111)
T d1cd0a_ 73 SASLTISGLKTEDEADYYCQSYD 95 (111)
T ss_dssp EEEEEECSCCGGGCEEEEEEEEE
T ss_pred ccccccccCCcccCcEEEEeecc
Confidence 77999999999999999997643
|
| >d2fnba_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin, different Fn3 modules species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.24 E-value=0.00072 Score=49.69 Aligned_cols=80 Identities=11% Similarity=0.146 Sum_probs=52.2
Q ss_pred CCCceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCc
Q psy7039 322 TGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGR 401 (516)
Q Consensus 322 ~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~ 401 (516)
...+.+..++.+++.|+|.+|.+ ..|.+|. +.|...+.. ...
T Consensus 9 P~~l~v~~~t~~si~l~W~~p~~---~~i~~Y~--------------------------------v~~~~~~~~---~~~ 50 (95)
T d2fnba_ 9 LTDLSFVDITDSSIGLRWTPLNS---STIIGYR--------------------------------ITVVAAGEG---IPI 50 (95)
T ss_dssp CTTCEEECCCSSCEEEECCCCCC---SSCCEEE--------------------------------EEEEEETSC---CEE
T ss_pred CCCeEEEEEcCCEEEEEEEecCC---ceEEeEE--------------------------------EEEEEeecc---ceE
Confidence 34489999999999999998853 3455551 111111100 011
Q ss_pred eEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeE
Q psy7039 402 IKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSA 440 (516)
Q Consensus 402 ~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~ 440 (516)
..........++.|.+|.+ ...|.|++.|.|..|.+..
T Consensus 51 ~~~~~~~~~t~~~i~~L~p-~t~Y~~~V~a~~~~g~s~p 88 (95)
T d2fnba_ 51 FEDFVDSSVGYYTVTGLEP-GIDYDISVITLINGGESAP 88 (95)
T ss_dssp EEEECCSSCSEEEECCCCT-TSEEEEEEEEEETTEECCC
T ss_pred EEEEeCCCCeEEEEecccC-CEEEEEEEEEEeCCcEeCC
Confidence 1122233445789999999 9999999999999886543
|
| >d1oaql_ b.1.1.1 (L:) Immunoglobulin light chain lambda variable domain, VL-lambda {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain lambda variable domain, VL-lambda species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.23 E-value=0.00073 Score=51.18 Aligned_cols=71 Identities=18% Similarity=0.153 Sum_probs=52.8
Q ss_pred ccEEEEcCCeEEEEEEEeeecCC---ceEEEEC--Cee------------cCCCCceEEEEcCCeEEEEEcCceecCCce
Q psy7039 363 RDMTVLAGEEFTITVPFSGRPKP---TPIWTVN--GDE------------VSPDGRIKFETSENQTIYRNKSAKRATDSG 425 (516)
Q Consensus 363 ~~~~v~~g~~~~l~C~~~g~p~~---~i~W~~~--~~~------------l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g 425 (516)
..+.+.+|+.++|.|...+.... .+.|++. +.. -....+|..........|.|.++.+ +|+|
T Consensus 8 ~slsvs~G~tvtl~C~~s~~~~~~~~~v~WyrQ~pg~~p~~l~y~~~~~~~~~~~rf~~s~~~~~~~L~I~~~~~-~Dsa 86 (110)
T d1oaql_ 8 SALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGNKAALTITGAQT-EDEA 86 (110)
T ss_dssp SEEEECTTCEEEEEEEETTBCCCGGGCCEEEEEETTTEEEEEEETTTEECTTSCTTEEEEEETTEEEEEEESCCG-GGCE
T ss_pred CCEEeCCCCCEEEEEEEcCCCCcceeeeEEEEeecccceeeeeeeeceeccccceeeeecccccceeeecCCCCc-cccE
Confidence 35678899999999998654322 3889862 111 1124577777777888999999999 9999
Q ss_pred EEEEEEEcC
Q psy7039 426 SYTIQLVNT 434 (516)
Q Consensus 426 ~y~c~a~n~ 434 (516)
.|.|.+...
T Consensus 87 ~YyCa~~~~ 95 (110)
T d1oaql_ 87 IYFCALWYS 95 (110)
T ss_dssp EEEEEEEET
T ss_pred eEEEEcccC
Confidence 999997753
|
| >d1q9ra1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]
Probab=97.22 E-value=0.00067 Score=51.77 Aligned_cols=71 Identities=18% Similarity=0.161 Sum_probs=51.8
Q ss_pred cccEEEEcCCeEEEEEEEeee---cC---CceEEEECC--e------------ecCCCCceEEEEcCCeEEEEEcCceec
Q psy7039 362 IRDMTVLAGEEFTITVPFSGR---PK---PTPIWTVNG--D------------EVSPDGRIKFETSENQTIYRNKSAKRA 421 (516)
Q Consensus 362 ~~~~~v~~g~~~~l~C~~~g~---p~---~~i~W~~~~--~------------~l~~~~~~~~~~~~~~~~l~i~~~~~~ 421 (516)
+..+.+.+|+.+.|.|...+. .. ..+.|++.. . ......++....+.....|.|.++.+
T Consensus 8 P~~v~~~~G~svtL~C~~s~~~~~~~~~~~~~~WYrq~~g~~p~ll~~~~~~~~~~~~~~~s~~~s~~~~~L~I~~l~~- 86 (113)
T d1q9ra1 8 PSSLAVSAGEKVTMSCKSSQSLLNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGSGTDFTLTITSVQA- 86 (113)
T ss_dssp CSEEEEETTSCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCG-
T ss_pred CCEEEECCCCCEEEEEEECCCcccCCCCCcceEEEecCCCCCCEEEEecccccCCCCCccEEEeCCCCeEeEEeccccc-
Confidence 466788999999999987532 11 248898731 1 11123567777777778999999999
Q ss_pred CCceEEEEEEEc
Q psy7039 422 TDSGSYTIQLVN 433 (516)
Q Consensus 422 ~~~g~y~c~a~n 433 (516)
+|+|.|.|.+..
T Consensus 87 ~Dsa~YyCA~~~ 98 (113)
T d1q9ra1 87 EDLAVYYCKQSY 98 (113)
T ss_dssp GGCEEEEEEECS
T ss_pred CCCeEEEecccC
Confidence 999999998654
|
| >d1dqta_ b.1.1.1 (A:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.22 E-value=0.00091 Score=51.39 Aligned_cols=86 Identities=14% Similarity=-0.033 Sum_probs=46.9
Q ss_pred ccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcC-cee-eEEee-CC-ee-eccCCceEEeecCCe
Q psy7039 121 LNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEP-FLN-HGWSI-NG-QV-CQIGGRADVQTTKSE 195 (516)
Q Consensus 121 ~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~-i~W~~-~~-~~-~~~~~~~~~~~~~~~ 195 (516)
|..+.+.+|+.++|.|.+.. ........+.|++.... .+. +.... .. .. ...............
T Consensus 6 P~~~~~~~g~~v~L~C~~~~-----------~~~~~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (117)
T d1dqta_ 6 PSVVLASSHGVASFPCEYSP-----------SHNTDEVRVTVLRQTNDQMTEVCATTFTEKNTVGFLDYPFCSGTFNESR 74 (117)
T ss_dssp CSEEECCTTSCEEEEEEEES-----------CCTTCEEEEEEEEECSSCEEEEEEEEECSSSBEECTTCTTEEEEEETTE
T ss_pred CCEEEEcCCCcEEEEEECcc-----------CCcccceeEEEEEeCCCCCcEEEEEEeCCcccccCCCCcEEEEeCCCCE
Confidence 45677889999999999861 00001111334442111 111 11111 11 11 011112233445667
Q ss_pred eEEEeccCCCCCCeeEEEEEEc
Q psy7039 196 TVLDIPFCSRSDTGHYSLTLEN 217 (516)
Q Consensus 196 ~~l~i~~~~~~d~g~Y~c~~~~ 217 (516)
..|.|.+++.+|+|.|.|.+..
T Consensus 75 ~~L~I~~l~~~Dsa~YyCa~~~ 96 (117)
T d1dqta_ 75 VNLTIQGLRAVDTGLYLCKVEL 96 (117)
T ss_dssp EEEEECSCCGGGCEEEEEEEEE
T ss_pred EEEEhhcCccccCEeEEEEEec
Confidence 8999999999999999998753
|
| >d1cfba2 b.1.2.1 (A:710-814) Neuroglian, two amino proximal Fn3 repeats {Drosophila melanogaster [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Neuroglian, two amino proximal Fn3 repeats species: Drosophila melanogaster [TaxId: 7227]
Probab=97.22 E-value=0.00049 Score=51.80 Aligned_cols=82 Identities=11% Similarity=0.033 Sum_probs=54.0
Q ss_pred ceeeeccCCeeEEEecCCC-CCCCCceeeccccccccccccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceE
Q psy7039 325 IDYTTVTPESVSMSWKPPV-DDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIK 403 (516)
Q Consensus 325 ~~~~~~~~~~~~l~W~~p~-~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~ 403 (516)
+.+...+.+++.|+|.++. ...+.+|.+|. |.|...+.. ......
T Consensus 11 v~~~~~~~~si~v~W~p~~~~~~ng~i~~Y~--------------------------------I~y~~~~~~--~~~~~~ 56 (105)
T d1cfba2 11 VVGQGTEPNNLVISWTPMPEIEHNAPNFHYY--------------------------------VSWKRDIPA--AAWENN 56 (105)
T ss_dssp CEEECSSTTCEEEECCCCCGGGTCSSSCEEE--------------------------------EEEEESSTT--CCCEEE
T ss_pred eEEEEccCCeEEEEEeCCChhhcCceEEEEE--------------------------------EEeeeeccc--cceeEE
Confidence 7888889999999999753 33333677772 233222210 011111
Q ss_pred EEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEE
Q psy7039 404 FETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSAS 441 (516)
Q Consensus 404 ~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s 441 (516)
........+++|.+|.+ ...|.|++.|.|..|.+..+
T Consensus 57 ~~~~~~~~~~~i~~L~p-~t~Y~~~V~A~N~~G~gp~S 93 (105)
T d1cfba2 57 NIFDWRQNNIVIADQPT-FVKYLIKVVAINDRGESNVA 93 (105)
T ss_dssp EECCTTCCEEEECSCCS-SCEEEEEEEEEETTEECSSC
T ss_pred EecCCCccEEEECCCCC-CCEEEEEEEEEeCCcCCCCC
Confidence 22234445789999999 99999999999999987443
|
| >d1l6za1 b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.21 E-value=8.7e-05 Score=56.36 Aligned_cols=76 Identities=14% Similarity=0.102 Sum_probs=51.3
Q ss_pred EEcCCeEEEEEEEeeecCCceEEEECCeecC-------------------CCCceEEEEcCCeEEEEEcCceecCCceEE
Q psy7039 367 VLAGEEFTITVPFSGRPKPTPIWTVNGDEVS-------------------PDGRIKFETSENQTIYRNKSAKRATDSGSY 427 (516)
Q Consensus 367 v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~-------------------~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y 427 (516)
+.+|+++.|.|.........+.|++...... -.+|..+. ...+|.|.++.. +|+|.|
T Consensus 11 v~~G~~V~L~c~~~p~~~~~~~W~k~~~~~~~~~i~~y~~~~~~~~~~~~y~gR~~l~---~ngSL~I~~v~~-~D~G~Y 86 (107)
T d1l6za1 11 VAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIY---SNGSLLFQMITM-KDMGVY 86 (107)
T ss_dssp CCTTCCEEEEEESCCTTCSEEEEEESSCCSGGGEEEEECSTTCCEECCSSCCSSEEEC---TTSCEEECSCCG-GGCEEE
T ss_pred ccCCCCEEEEecCCCCCceEEEEEeCcccCCceeeEEEEcCCCccccCCcceeEEEEc---ccccEEEcCCCc-hhCEEE
Confidence 5699999999974433345799998543210 01233332 224799999999 999999
Q ss_pred EEEEEcCCC-ceeEEEEEEE
Q psy7039 428 TIQLVNTVG-SDSASCKVYV 446 (516)
Q Consensus 428 ~c~a~n~~G-~~s~s~~l~v 446 (516)
+|.+.+..+ ....++.|.|
T Consensus 87 ~c~v~~~~~~~~~~~v~L~V 106 (107)
T d1l6za1 87 TLDMTDENYRRTQATVRFHV 106 (107)
T ss_dssp EEEEEETTEEECCCCEEECC
T ss_pred EEEEEECCCCEEEEEEEEEE
Confidence 999988764 3555555544
|
| >d2atpb1 b.1.1.1 (B:1-115) CD8 {Mouse (Mus musculus), beta-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD8 species: Mouse (Mus musculus), beta-chain [TaxId: 10090]
Probab=97.21 E-value=0.00051 Score=52.70 Aligned_cols=85 Identities=9% Similarity=0.065 Sum_probs=49.0
Q ss_pred CcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCc--CceeeEE---eeCC-eee-c---cCCceE
Q psy7039 119 STLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSE--PFLNHGW---SING-QVC-Q---IGGRAD 188 (516)
Q Consensus 119 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--p~~~i~W---~~~~-~~~-~---~~~~~~ 188 (516)
..+..+.+.+|++++|.|... +......+.|++... +...+.| .... ... . ...++.
T Consensus 3 Q~P~~~~v~~G~sv~l~C~~~-------------~~~~~~~v~Wyrq~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~r~~ 69 (115)
T d2atpb1 3 QTPSSLLVQTNHTAKMSCEVK-------------SISKLTSIYWLRERQDPKDKYFEFLASWSSSKGVLYGESVDKKRNI 69 (115)
T ss_dssp EECSEEEECTTSCEEEEEECC-------------SSCCSSEEEEEEEEECSSCEEEEEEEEEETTTEEEECGGGTTTCCE
T ss_pred eeCCcEEEcCCCCEEEEEEEe-------------CCCCCCceEEEEeecCCCCeEEEEeeEEecccCcEecCCcCCCCEE
Confidence 456678899999999999987 111222344544311 1111222 1111 111 0 122333
Q ss_pred Eee--cCCeeEEEeccCCCCCCeeEEEEEE
Q psy7039 189 VQT--TKSETVLDIPFCSRSDTGHYSLTLE 216 (516)
Q Consensus 189 ~~~--~~~~~~l~i~~~~~~d~g~Y~c~~~ 216 (516)
... ......|.|.+++.+|+|.|.|...
T Consensus 70 ~~~~~~~~~~~L~I~~~~~~Dsg~Y~Ca~~ 99 (115)
T d2atpb1 70 ILESSDSRRPFLSIMNVKPEDSDFYFCATV 99 (115)
T ss_dssp EEESTTSSSCEEEECSCCGGGCEEEEEEEE
T ss_pred EEEeCCCCeEEEeecccCCCCCcEEEEeEc
Confidence 332 3345689999999999999999865
|
| >d1va9a1 b.1.2.1 (A:8-116) Down syndrome cell adhesion molecule-like protein 1, DSCAML1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Down syndrome cell adhesion molecule-like protein 1, DSCAML1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.21 E-value=0.0004 Score=52.56 Aligned_cols=89 Identities=17% Similarity=0.318 Sum_probs=56.1
Q ss_pred ceeeeccCCeeEEEecCCCCC-CCCceeeccccccccccccEEEEcCCeEEEEEEEeeecCCceEEEECCeecC-CCCce
Q psy7039 325 IDYTTVTPESVSMSWKPPVDD-GGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVS-PDGRI 402 (516)
Q Consensus 325 ~~~~~~~~~~~~l~W~~p~~~-~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~-~~~~~ 402 (516)
+.+...+.+++.|+|.+|... .+.++.+|. +.|...+.... .....
T Consensus 15 v~v~~~~~~si~l~W~~p~~~~~~~~i~~y~--------------------------------v~~~~~~~~~~~~~~~~ 62 (109)
T d1va9a1 15 VTLQPVTSQSIQVTWKAPKKELQNGVIRGYQ--------------------------------IGYRENSPGSNGQYSIV 62 (109)
T ss_dssp EEEEECSSSEEEEEEECCCSSTTCSCCCEEE--------------------------------EEEEESSTTSCCSCBCC
T ss_pred cEEEEecCCEEEEEEcCCCCCCCCCcEEEEE--------------------------------EEEeeccccccceeeee
Confidence 778888999999999987543 344566662 12222111100 00111
Q ss_pred EEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEEEE
Q psy7039 403 KFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYV 446 (516)
Q Consensus 403 ~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~v 446 (516)
..........+.|.+|.+ ...|.|++.|.|..|.+..+..+.+
T Consensus 63 ~~~~~~~~~~~~i~~L~p-~t~Y~~~V~a~n~~G~g~~S~~v~~ 105 (109)
T d1va9a1 63 EMKATGDSEVYTLDNLKK-FAQYGVVVQAFNRAGTGPSSSEINA 105 (109)
T ss_dssp BCCCCSSEEEEEEESCCS-SCCEEEEEEEEETTEECCCCCCEEC
T ss_pred EEecCCCeeEEEECCCCc-ceEEEEEEEEEcCCcCCCCCCCEEE
Confidence 112233456799999999 9999999999999987655544443
|
| >d1ucta2 b.1.1.4 (A:101-196) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Ig alpha Fc receptor, FCARI (CD89) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.21 E-value=0.00042 Score=51.09 Aligned_cols=67 Identities=16% Similarity=0.211 Sum_probs=48.3
Q ss_pred ccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcC
Q psy7039 363 RDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNT 434 (516)
Q Consensus 363 ~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~ 434 (516)
....+..|++++|.|.........+.|+++|...... ....+....+.|.++.. .|+|+|+|.....
T Consensus 12 P~~~V~~G~~VTL~C~~~~~~~~~f~L~k~g~~~~~~----~~~~~~~a~F~l~~v~~-~~~G~Y~C~y~~~ 78 (96)
T d1ucta2 12 RGLVLMPGENISLTCSSAHIPFDRFSLAKEGELSLPQ----HQSGEHPANFSLGPVDL-NVSGIYRCYGWYN 78 (96)
T ss_dssp SCSEECTTCCCEEEEECSSSCCSEEEEEETTCSSCCS----EEECSSSEEEECCSCCG-GGCEEEEEEEECT
T ss_pred CCCccCCCCeEEEEEeCCCCCceEEEEEECCcccceE----EcCCCcccEEEEecccc-ccCcEEEEEEEcC
Confidence 3447899999999998533333468899988532211 12334557899999999 9999999987654
|
| >d1bd2d1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), alpha-chain [TaxId: 9606]
Probab=97.21 E-value=0.0006 Score=51.91 Aligned_cols=72 Identities=14% Similarity=0.221 Sum_probs=50.7
Q ss_pred ccccEEEEcCCeEEEEEEEeeecCCceEEEEC--Ceec------------CCCCceEE--EEcCCeEEEEEcCceecCCc
Q psy7039 361 SIRDMTVLAGEEFTITVPFSGRPKPTPIWTVN--GDEV------------SPDGRIKF--ETSENQTIYRNKSAKRATDS 424 (516)
Q Consensus 361 ~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~--~~~l------------~~~~~~~~--~~~~~~~~l~i~~~~~~~~~ 424 (516)
.+..+.+.+|+.++|.|.........+.|++. +... ....++.. ........|.|.++.+ .|+
T Consensus 6 ~p~s~~~~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~-~Ds 84 (111)
T d1bd2d1 6 NSPSLSVQEGRISILNCDYTNSMFDYFLWYKKYPAEGPTFLISISSIKDKNADGRFTVFLNKSAKHLSLHIVPSQP-GDS 84 (111)
T ss_dssp CCSEEEEETTSCEEEEEEECCTTCCEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEESSCCG-GGC
T ss_pred cCCEEEEcCCCCEEEEEEeCCCCCCeEEEEEECCCCcceeeeeeeceeccccCCcceEEEEccCCEEEEEECCCcc-ccc
Confidence 35667889999999999987655556888873 1110 01123333 2334567899999999 999
Q ss_pred eEEEEEEEc
Q psy7039 425 GSYTIQLVN 433 (516)
Q Consensus 425 g~y~c~a~n 433 (516)
+.|.|.+..
T Consensus 85 a~YyCa~~~ 93 (111)
T d1bd2d1 85 AVYFCAAME 93 (111)
T ss_dssp EEEEEEEES
T ss_pred EEEEeeccC
Confidence 999998874
|
| >d1wisa1 b.1.2.1 (A:8-118) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Sidekick 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.21 E-value=0.00027 Score=53.82 Aligned_cols=46 Identities=35% Similarity=0.680 Sum_probs=38.2
Q ss_pred CCCCCCCCcccccccCCeEEEEeeCCCCCCCCCcceEEEEEEecCCCc
Q psy7039 449 KPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATGV 496 (516)
Q Consensus 449 ~p~~P~~~l~~~~~~~~~~~l~W~~p~~~~~~~i~~Y~v~~~~~~~~~ 496 (516)
.|.+| .++.+..++.+++.|+|++|. +++++|.+|.|+|+......
T Consensus 10 ~P~~P-~~~~~~~~~~~sv~l~W~pp~-~~~~~i~~y~v~~~~~~~~~ 55 (111)
T d1wisa1 10 LPGPP-TNLGISNIGPRSVTLQFRPGY-DGKTSISRWLVEAQVGVVGE 55 (111)
T ss_dssp CCCCC-EEEEEESCCSSCEEEEEECCC-CCSSCCSEEEEEECBSCCST
T ss_pred CCcCC-CCCEEEEcCCCEEEEEEeCCC-CCCCceeEEEEeeeecccCC
Confidence 46666 678888899999999999875 78899999999998765544
|
| >d1ueya_ b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: KIAA0343 protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.21 E-value=0.00025 Score=55.55 Aligned_cols=104 Identities=22% Similarity=0.274 Sum_probs=60.3
Q ss_pred EEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeeecCCceEEEEC
Q psy7039 313 VVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVN 392 (516)
Q Consensus 313 ~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~ 392 (516)
.+...|.+|.. +.+..++.+++.|+|++|.+.++ .|..|. +.|...
T Consensus 12 ~v~d~P~~P~~-~~v~~~~~~sv~l~W~~p~~~~~-~i~~~~--------------------------------~~~~~~ 57 (127)
T d1ueya_ 12 PVYDVPNPPFD-LELTDQLDKSVQLSWTPGDDNNS-PITKFI--------------------------------IEYEDA 57 (127)
T ss_dssp CCCCSCCCCEE-EEEECCSSSCEEEEEECCCCCSS-CEEEEE--------------------------------EEEEBT
T ss_pred cccccCcCCCC-cEEEEecCCeEEEEEeCCccccc-ceEeee--------------------------------eeeccc
Confidence 34456655544 78888999999999998765433 444441 111111
Q ss_pred CeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEE-EEEEEecCCCCC
Q psy7039 393 GDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSAS-CKVYVVDKPSPP 453 (516)
Q Consensus 393 ~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s-~~l~v~~~p~~P 453 (516)
+.. ...............+.|.+|.+ ...|.|++.|.|..|.+..+ ....+...+..|
T Consensus 58 ~~~--~~~~~~~~~~~~~~~~~i~~L~p-~t~Y~frV~A~n~~G~s~~S~~s~~~~t~~~~P 116 (127)
T d1ueya_ 58 MHK--PGLWHHQTEVSGTQTTAQLNLSP-YVNYSFRVMAVNSIGKSLPSEASEQYLTKASEP 116 (127)
T ss_dssp TTC--TTCEEEEEEEESSCCEEEECCCT-TCEECCEEEEEESSCBCCCCSCCCCEECCCSSC
T ss_pred ccc--ceeEEEEeecCCceEEEECCCcc-CCEEEEEEEEEcCCcCcCCcCCcccEEcCCCCC
Confidence 100 01111111222334577889999 99999999999999986443 222333444433
|
| >d2ntsp1 b.1.1.1 (P:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=97.18 E-value=0.0011 Score=50.61 Aligned_cols=84 Identities=13% Similarity=0.115 Sum_probs=48.4
Q ss_pred cccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCc-Ccee-eEEeeCCeeec---cCCceEEe-ecC
Q psy7039 120 TLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSE-PFLN-HGWSINGQVCQ---IGGRADVQ-TTK 193 (516)
Q Consensus 120 ~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~-i~W~~~~~~~~---~~~~~~~~-~~~ 193 (516)
.|..+.+.+|++++|.|.... ....+-|++... ..+. +.......... ...++... ...
T Consensus 5 ~P~~~~~~~G~svtl~C~~~~---------------~~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (113)
T d2ntsp1 5 TPRYLIKTRGQQVTLSCSPIS---------------GHRSVSWYQQTPGQGLQFLFEYFNETQRNKGNFPGRFSGRQFSN 69 (113)
T ss_dssp ECSEEEEETTCCEEEEEECST---------------TCCEEEEEEEETTTEEEEEEEEETTEEEEECSCCTTEEEEECTT
T ss_pred CCCeEEECCCCCEEEEEEECC---------------CCCEEEEEEeecccceEeeeeecccccccccccccceeeccCcC
Confidence 355688999999999998661 112344554211 1111 11111111111 12333332 344
Q ss_pred CeeEEEeccCCCCCCeeEEEEEEcC
Q psy7039 194 SETVLDIPFCSRSDTGHYSLTLENN 218 (516)
Q Consensus 194 ~~~~l~i~~~~~~d~g~Y~c~~~~~ 218 (516)
....|.|.+++.+|+|.|.|.+...
T Consensus 70 ~~~~L~I~~~~~~Dsa~YyCA~~~~ 94 (113)
T d2ntsp1 70 SRSEMNVSTLELGDSALYLCASSLA 94 (113)
T ss_dssp SCEEEEECSCCGGGCEEEEEEEESS
T ss_pred CeeEEEECCCCcccceeeeeeeeCC
Confidence 5679999999999999999987643
|
| >d1smoa_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: TREM-1 (triggering receptor expressed on myeloid cells 1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.18 E-value=0.00062 Score=52.00 Aligned_cols=84 Identities=14% Similarity=0.144 Sum_probs=49.3
Q ss_pred cceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCc-CceeeEEeeCCeeec----cCCceEEee--cCC
Q psy7039 122 NDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSE-PFLNHGWSINGQVCQ----IGGRADVQT--TKS 194 (516)
Q Consensus 122 ~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~i~W~~~~~~~~----~~~~~~~~~--~~~ 194 (516)
..+.+.+|++++|.|.... ....+..+-|++... ..+.+....+...-. ..+|+.+.. ...
T Consensus 7 ~~~~v~eG~svtl~C~~~~------------~~~~~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~ 74 (113)
T d1smoa_ 7 EKYELKEGQTLDVKCDYTL------------EKFASSQKAWQIIRDGEMPKTLACTERPSKNSHPVQVGRIILEDYHDHG 74 (113)
T ss_dssp EEEECCTTCCEEEEEECCH------------HHHTTSCEEEEEECTTSCCEEEEECCSSCCSSCCEEETTEEEEEETTTT
T ss_pred CcEEEccCCCEEEEEEeCC------------CCCCCCEEEEEECCCCCCCEEEEecCCCCceEcceECCeEEEEEECCCC
Confidence 3467889999999998761 112233455665321 122222222111111 124565543 344
Q ss_pred eeEEEeccCCCCCCeeEEEEEEc
Q psy7039 195 ETVLDIPFCSRSDTGHYSLTLEN 217 (516)
Q Consensus 195 ~~~l~i~~~~~~d~g~Y~c~~~~ 217 (516)
...|.|.+++.+|+|.|.|.+..
T Consensus 75 ~~~Lti~~l~~~Dsg~Y~Cav~~ 97 (113)
T d1smoa_ 75 LLRVRMVNLQVEDSGLYQCVIYQ 97 (113)
T ss_dssp EEEEEECSCCGGGCEEEEEEECC
T ss_pred EEEEEEccCCcccCceEEEEEEC
Confidence 56899999999999999998754
|
| >d1sq2n_ b.1.1.1 (N:) Novel antigen receptor (against lysozyme) {Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Novel antigen receptor (against lysozyme) species: Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]
Probab=97.17 E-value=0.0011 Score=50.36 Aligned_cols=73 Identities=21% Similarity=0.250 Sum_probs=52.4
Q ss_pred cccEEEEcCCeEEEEEEEeee--cCCceEEEEC------CeecCCCCceEEEEc--CCeEEEEEcCceecCCceEEEEEE
Q psy7039 362 IRDMTVLAGEEFTITVPFSGR--PKPTPIWTVN------GDEVSPDGRIKFETS--ENQTIYRNKSAKRATDSGSYTIQL 431 (516)
Q Consensus 362 ~~~~~v~~g~~~~l~C~~~g~--p~~~i~W~~~------~~~l~~~~~~~~~~~--~~~~~l~i~~~~~~~~~g~y~c~a 431 (516)
+..+.+..|+.++|.|...+. ....+.|++. ...+..+.++..... .....|+|.++.+ +|+|.|.|.+
T Consensus 6 P~s~t~~~G~svtl~C~~s~~s~~~~~i~WYrq~~g~~~~~~~~~~gr~~~~~~~~~~~~~L~I~~l~~-~Dsa~YyCA~ 84 (112)
T d1sq2n_ 6 PRSVTKETGESLTINCVLRDASYALGSTCWYRKKSGEGNEESISKGGRYVETVNSGSKSFSLRINDLTV-EDGGTYRCGL 84 (112)
T ss_dssp CSEEEECTTCCEEEEEEECSCSSCCCCEEEEEEETTSCCCEECCCBTTEEEEEETTTTEEEEEECSCCG-GGCEEEEEEE
T ss_pred CCEEEEcCCCCEEEEEEECCCcccCCceEEEEeeccceeeeeeccCCcEeeEEecCCceeeeEecCCcC-ccCEEEeEEE
Confidence 456778899999999988543 3457899973 123334455555433 2456899999999 9999999987
Q ss_pred EcCC
Q psy7039 432 VNTV 435 (516)
Q Consensus 432 ~n~~ 435 (516)
....
T Consensus 85 ~~~~ 88 (112)
T d1sq2n_ 85 GVAG 88 (112)
T ss_dssp CBTT
T ss_pred ecCC
Confidence 6553
|
| >d1tvda_ b.1.1.1 (A:) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), delta-chain [TaxId: 9606]
Probab=97.16 E-value=0.0013 Score=50.32 Aligned_cols=76 Identities=17% Similarity=0.248 Sum_probs=52.8
Q ss_pred ccccEEEEcCCeEEEEEEEeee-cCCceEEEEC--Ceec---------------CCCCceEEEE--cCCeEEEEEcCcee
Q psy7039 361 SIRDMTVLAGEEFTITVPFSGR-PKPTPIWTVN--GDEV---------------SPDGRIKFET--SENQTIYRNKSAKR 420 (516)
Q Consensus 361 ~~~~~~v~~g~~~~l~C~~~g~-p~~~i~W~~~--~~~l---------------~~~~~~~~~~--~~~~~~l~i~~~~~ 420 (516)
.+..+.+.+|+.++|.|..... ....+.|++. +... ....++.... ......|+|.++..
T Consensus 6 ~p~~~~~~~G~~vtL~C~~~~~~~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~ 85 (116)
T d1tvda_ 6 SSPDQTVASGSEVVLLCTYDTVYSNPDLFWYRIRPDYSFQFVFYGDDSRSEGADFTQGRFSVKHILTQKAFHLVISPVRT 85 (116)
T ss_dssp CSCCEEEETTCCEEECCEEECCSSSCCEEEEEECTTSCEEEEEEECSSCEEECGGGTTTEEEEEEGGGTEEEEEESSCCG
T ss_pred cCCCEEEcCCCCEEEEEEEcCCccCCcEEEEEeCCCCceEEeeecccccccccCccceEEEEEecCceeEEeeeecCccc
Confidence 3566789999999999998644 3457899862 1110 0124555543 23446899999999
Q ss_pred cCCceEEEEEEEcCCCc
Q psy7039 421 ATDSGSYTIQLVNTVGS 437 (516)
Q Consensus 421 ~~~~g~y~c~a~n~~G~ 437 (516)
+|+|.|.|.+....+.
T Consensus 86 -~Dsg~YyCa~~~~~~~ 101 (116)
T d1tvda_ 86 -EDSATYYCAFTLPPPT 101 (116)
T ss_dssp -GGCEEEEEEEECTTTT
T ss_pred -cccccceeeEecCCCC
Confidence 9999999988765443
|
| >d1u3ha1 b.1.1.1 (A:2-116) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]
Probab=97.15 E-value=0.00034 Score=53.23 Aligned_cols=71 Identities=18% Similarity=0.243 Sum_probs=48.7
Q ss_pred cccEEEEcCCeEEEEEEEeeecCCceEEEECC--eec------------CCCCce--EEEEcCCeEEEEEcCceecCCce
Q psy7039 362 IRDMTVLAGEEFTITVPFSGRPKPTPIWTVNG--DEV------------SPDGRI--KFETSENQTIYRNKSAKRATDSG 425 (516)
Q Consensus 362 ~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~--~~l------------~~~~~~--~~~~~~~~~~l~i~~~~~~~~~g 425 (516)
+..+.+.+|+.++|.|.........+.|++.. ... ....++ ..........|.|.++.+ .|+|
T Consensus 6 P~~~~~~~G~~vtl~C~~~~~~~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~-~Dsa 84 (110)
T d1u3ha1 6 PQSLTVWEGETAILNCSYENSAFDYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQP-GDSA 84 (110)
T ss_dssp CSSEEEETTSCEEEEEEECCTTEEEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETGGGEEEEEESSCCT-TSCS
T ss_pred CCEEEEcCCCCEEEEEEecCCCCcEEEEEeeccccceeeeeeeccccccccccceeEEECCCCCeeEeEeccCCC-CCce
Confidence 45678899999999999865443468898731 110 001122 222334557899999999 9999
Q ss_pred EEEEEEEc
Q psy7039 426 SYTIQLVN 433 (516)
Q Consensus 426 ~y~c~a~n 433 (516)
.|.|.+..
T Consensus 85 ~YyCa~~~ 92 (110)
T d1u3ha1 85 TYFCAASA 92 (110)
T ss_dssp EEEECCEE
T ss_pred eEeeeecC
Confidence 99998764
|
| >d1h5ba_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]
Probab=97.15 E-value=0.00097 Score=50.86 Aligned_cols=86 Identities=12% Similarity=0.123 Sum_probs=48.1
Q ss_pred CcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecC-cCceeeEEeeCCeeeccCCc-eE-EeecCCe
Q psy7039 119 STLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLS-EPFLNHGWSINGQVCQIGGR-AD-VQTTKSE 195 (516)
Q Consensus 119 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~p~~~i~W~~~~~~~~~~~~-~~-~~~~~~~ 195 (516)
..+..+.+.+|+.++|.|...+ ....+-|++.. ...+.+..+........... .. .......
T Consensus 6 Q~P~~~~v~~G~~vtl~C~~~~---------------~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 70 (113)
T d1h5ba_ 6 QSPSALSLHEGTDSALRCNFTT---------------TMRSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSERARY 70 (113)
T ss_dssp EECSEEEEETTCCEEEEEEESS---------------CCSEEEEEEECTTSCEEEEEEESSSEEEETTEEEECCSSSSSE
T ss_pred ECCCEEEEcCCCCEEEEEEEec---------------CCccceEEEeecccceEEEEEeeeeeccccccceEEeecCCce
Confidence 4456788999999999998771 11223454431 11122111111111111111 11 1123345
Q ss_pred eEEEeccCCCCCCeeEEEEEEcCC
Q psy7039 196 TVLDIPFCSRSDTGHYSLTLENNL 219 (516)
Q Consensus 196 ~~l~i~~~~~~d~g~Y~c~~~~~~ 219 (516)
..|.|.+++.+|+|.|.|.+....
T Consensus 71 ~~L~I~~~~~~Dsa~YyCa~~~~~ 94 (113)
T d1h5ba_ 71 STLHIRDAQLEDSGTYFCAAEASS 94 (113)
T ss_dssp EEEEECSCCGGGCEEEEEEEECSS
T ss_pred eEEEECCCCHhHCEEEEEEecCCC
Confidence 689999999999999999876543
|
| >d1v5ja_ b.1.2.1 (A:) KIAA1355 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: KIAA1355 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.14 E-value=0.00021 Score=54.30 Aligned_cols=45 Identities=31% Similarity=0.470 Sum_probs=35.1
Q ss_pred CCCCCCCCcccccccCCeEEEEeeCCCCCCCCCcceEEEEEEecCCCc
Q psy7039 449 KPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATGV 496 (516)
Q Consensus 449 ~p~~P~~~l~~~~~~~~~~~l~W~~p~~~~~~~i~~Y~v~~~~~~~~~ 496 (516)
.+.|| .++.+. .+.+++.|+|++|. +.+++|.+|+|+|+..+...
T Consensus 7 ~~sPP-~~~~~~-~t~~si~l~W~pp~-~~~~~i~~Y~v~~~~~~~~~ 51 (108)
T d1v5ja_ 7 GLSPP-RGLVAV-RTPRGVLLHWDPPE-LVPKRLDGYVLEGRQGSQGW 51 (108)
T ss_dssp CCCCC-EEEEEE-ECSSSEEEEEECCS-CCSSCCCBEEEEEEETTCCC
T ss_pred CCCcC-CCeEEE-EcCCEEEEEEEecc-cCCCceeEEEEEeeeeeeee
Confidence 35666 777764 47789999999886 45678999999999876655
|
| >d2ak4d1 b.1.1.1 (D:1-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), alpha-chain [TaxId: 9606]
Probab=97.13 E-value=0.00059 Score=52.24 Aligned_cols=75 Identities=20% Similarity=0.322 Sum_probs=50.6
Q ss_pred ccccEEEEcCCeEEEEEEEeee-cCCceEEEEC--Ceec-------C------CCCc--eEEEEcCCeEEEEEcCceecC
Q psy7039 361 SIRDMTVLAGEEFTITVPFSGR-PKPTPIWTVN--GDEV-------S------PDGR--IKFETSENQTIYRNKSAKRAT 422 (516)
Q Consensus 361 ~~~~~~v~~g~~~~l~C~~~g~-p~~~i~W~~~--~~~l-------~------~~~~--~~~~~~~~~~~l~i~~~~~~~ 422 (516)
.+..+.+.+|++++|.|..... ....+.|++. +..+ . ...+ +..........|.|.++.. .
T Consensus 6 ~~~~v~v~~G~~VtL~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~-~ 84 (114)
T d2ak4d1 6 AQTEISVVEKEDVTLDCVYETRDTTYYLFWYKQPPSGELVFLIRRNSFDEQNEISGRYSWNFQKSTSSFNFTITASQV-V 84 (114)
T ss_dssp CCCEEEEETTCCEEECCEEECSCSSCEEEEEEECTTCCCEEEEEEETTSCSEEEETTEEEEEETTTTEEEEEESSCCG-G
T ss_pred cCCeEEEeCCCCEEEEEEEcCCCcCccEEEEEccccCcceEeeeEeeeeecCCCCcceEEEEcCCCCEEEEeeccccc-c
Confidence 3566789999999999987543 3446789873 1110 0 0112 2223344567899999999 9
Q ss_pred CceEEEEEEEcCCC
Q psy7039 423 DSGSYTIQLVNTVG 436 (516)
Q Consensus 423 ~~g~y~c~a~n~~G 436 (516)
|+|.|.|.+....+
T Consensus 85 Dsg~YyCa~~~~~~ 98 (114)
T d2ak4d1 85 DSAVYFCALSGFYN 98 (114)
T ss_dssp GCEEEEEEEECSBT
T ss_pred cCCCceEeCCCCCC
Confidence 99999998876654
|
| >d1ymmd1 b.1.1.1 (D:9-104) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), alpha-chain [TaxId: 9606]
Probab=97.13 E-value=3.3e-05 Score=57.43 Aligned_cols=83 Identities=16% Similarity=0.213 Sum_probs=46.3
Q ss_pred ceEEecCCeEEEEEeeeeccccccCccccccccccCccceeec--CcCceeeEEeeCCeeeccCCceEEee--cCCeeEE
Q psy7039 123 DVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKL--SEPFLNHGWSINGQVCQIGGRADVQT--TKSETVL 198 (516)
Q Consensus 123 ~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~~~i~W~~~~~~~~~~~~~~~~~--~~~~~~l 198 (516)
.+.|.+|++++|.|...+ ....+-|++. +.....+.....+..-....|+.+.. ......|
T Consensus 2 slsV~eG~~vtL~C~~~~---------------~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L 66 (96)
T d1ymmd1 2 ALSIQEGENATMNCSYKT---------------SINNLQWYRQNSGRGLVHLILIRSNEREKHSGRLRVTLDTSKKSSSL 66 (96)
T ss_dssp CCCCSSCCCCCBCCBCSS---------------CEEEEEEECCCSSCCCCCCCEEESSSCCCCSSSCCBCCBGGGTBCCB
T ss_pred CceECCCCCEEEEEEEeC---------------CcccEEEEEECCCCCccccccccceecccccccceeeccCcceeccc
Confidence 356789999999998761 0112344432 11111111111111111234444332 2334689
Q ss_pred EeccCCCCCCeeEEEEEEcCCC
Q psy7039 199 DIPFCSRSDTGHYSLTLENNLG 220 (516)
Q Consensus 199 ~i~~~~~~d~g~Y~c~~~~~~g 220 (516)
.|.+++.+|+|.|.|.+....|
T Consensus 67 ~I~~~~~~Dsa~YyCA~~~~~g 88 (96)
T d1ymmd1 67 LITASRAADTASYFCATDTTSG 88 (96)
T ss_dssp CCSSCCSTTCSCCEEEEEETTS
T ss_pred CcCCCCcccCEEEeEeEecCCC
Confidence 9999999999999998765444
|
| >d1f3rb2 b.1.1.1 (B:139-257) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.13 E-value=0.00051 Score=52.90 Aligned_cols=72 Identities=14% Similarity=0.069 Sum_probs=53.1
Q ss_pred cccEEEEcCCeEEEEEEEeeecCCceEEEECCe--------------ecCCCCceEEEEcCCeEEEEEcCceecCCceEE
Q psy7039 362 IRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGD--------------EVSPDGRIKFETSENQTIYRNKSAKRATDSGSY 427 (516)
Q Consensus 362 ~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~--------------~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y 427 (516)
+..+.+.+|+.++|.|.....-...+.|++... ......++..........|.|.++.+ .|++.|
T Consensus 8 P~sv~~~~G~svtl~C~~s~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~-~DsavY 86 (119)
T d1f3rb2 8 PSLLSASVGDRVTLSCKGSQNINNYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGSGTDYTLTISSLQP-EDVATY 86 (119)
T ss_dssp TSEECCCTTCCEEEEEECSSCCBTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEEBTEEEEEECSCCG-GGCSEE
T ss_pred CCEEEECCCCCEEEEEEeCCCCcceeEEeeeecccccEEEEEeeccccCceeeeecccCCCCEEEEEcccCcc-CCCeEE
Confidence 345678899999999988655455689987321 01123466666667778899999999 999999
Q ss_pred EEEEEcC
Q psy7039 428 TIQLVNT 434 (516)
Q Consensus 428 ~c~a~n~ 434 (516)
.|.+...
T Consensus 87 yCa~~~~ 93 (119)
T d1f3rb2 87 FCYQYNN 93 (119)
T ss_dssp EEEEESS
T ss_pred EeeccCC
Confidence 9987643
|
| >d2nxyb1 b.1.1.1 (B:1001-1097) CD4 V-set domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD4 V-set domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.12 E-value=0.00027 Score=52.43 Aligned_cols=68 Identities=15% Similarity=0.144 Sum_probs=47.0
Q ss_pred EEEEcCCeEEEEEEEeeecCCceEEEECCeec--C------------CCCceEEEE---cCCeEEEEEcCceecCCceEE
Q psy7039 365 MTVLAGEEFTITVPFSGRPKPTPIWTVNGDEV--S------------PDGRIKFET---SENQTIYRNKSAKRATDSGSY 427 (516)
Q Consensus 365 ~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l--~------------~~~~~~~~~---~~~~~~l~i~~~~~~~~~g~y 427 (516)
+...+|++++|.|.........+.|++..... . ...++.... ..+..+|+|.++.. .|+|.|
T Consensus 4 V~~~~G~svtL~C~~s~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~l~~-~DsG~Y 82 (97)
T d2nxyb1 4 VLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKI-EDSDTY 82 (97)
T ss_dssp EEEETTSCEEECCBCSSSSCCCEEEEETTCCEEEEEETTEEEECSSTTGGGEECCGGGGGGTBCCEEECSCCG-GGCEEE
T ss_pred EEEEcCCcEEEEEEEecCCCceEEEEEeCCceeeeecceeeeecCceeccceEEEeccCCCCEEEEEECCCCh-HHCEEE
Confidence 45679999999999877777789998753211 0 011222211 12234799999999 999999
Q ss_pred EEEEEc
Q psy7039 428 TIQLVN 433 (516)
Q Consensus 428 ~c~a~n 433 (516)
.|.+.+
T Consensus 83 ~C~v~~ 88 (97)
T d2nxyb1 83 ICEVED 88 (97)
T ss_dssp EEEETT
T ss_pred EEEEec
Confidence 999864
|
| >d1fnfa3 b.1.2.1 (A:1327-1415) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin, different Fn3 modules species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.12 E-value=0.00021 Score=51.99 Aligned_cols=41 Identities=29% Similarity=0.488 Sum_probs=34.8
Q ss_pred CCCCCCcccccccCCeEEEEeeCCCCCCCCCcceEEEEEEecCCCc
Q psy7039 451 SPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATGV 496 (516)
Q Consensus 451 ~~P~~~l~~~~~~~~~~~l~W~~p~~~~~~~i~~Y~v~~~~~~~~~ 496 (516)
++| .+|++..++.+++.|+|++|. +.+.+|.|+|+..+...
T Consensus 2 d~P-~~l~v~~vt~~sv~l~W~~p~----~~~~~Y~i~~~~~~~~~ 42 (89)
T d1fnfa3 2 DSP-TGIDFSDITANSFTVHWIAPR----ATITGYRIRHHPEHFSG 42 (89)
T ss_dssp CCC-EEEEEESCCSSEEEEEEECCS----SCCSEEEEEEECSCCSS
T ss_pred ccC-cCCEEEEecCCEEEEEEEeCC----CEEeeEEEEEEECCCCC
Confidence 456 789999999999999999874 45899999999876655
|
| >d1dr9a1 b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD80, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.11 E-value=0.00043 Score=52.17 Aligned_cols=71 Identities=15% Similarity=0.155 Sum_probs=48.9
Q ss_pred EEEEcCCeEEEEEEEeeecC----CceEEEECCeecC------------CCCceEEEEcCCeEEEEEcCceecCCceEEE
Q psy7039 365 MTVLAGEEFTITVPFSGRPK----PTPIWTVNGDEVS------------PDGRIKFETSENQTIYRNKSAKRATDSGSYT 428 (516)
Q Consensus 365 ~~v~~g~~~~l~C~~~g~p~----~~i~W~~~~~~l~------------~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~ 428 (516)
+....|+.+.|.|....... ..+.|.+++..+- ...+..... .+..+|.|.++.. .|+|.|.
T Consensus 4 Vt~~~G~~a~L~C~~~~~~~~~~~~~v~w~~~~~~v~~~~~~~~~~~~~~~~r~~~~~-~g~~sL~I~~v~~-~D~G~Y~ 81 (105)
T d1dr9a1 4 VTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDI-TNNLSIVILALRP-SDEGTYE 81 (105)
T ss_dssp EEEETTSCEEECCSCCCCTTHHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEEES-TTTTEEEECSCCG-GGCEEEE
T ss_pred EEEEeCCCEEEEEEECCcccceeEEEEEEEecceEEEEEEeccceeecceeeeeeecc-CCcEEEEECcCCh-HHCeEEE
Confidence 56789999999998754322 2578887664321 012334333 2345899999999 9999999
Q ss_pred EEEEcCCCc
Q psy7039 429 IQLVNTVGS 437 (516)
Q Consensus 429 c~a~n~~G~ 437 (516)
|.+.+..+.
T Consensus 82 C~V~~~~~~ 90 (105)
T d1dr9a1 82 CVVLKYEKD 90 (105)
T ss_dssp EEEEECCTT
T ss_pred EEEEeCCCC
Confidence 999865443
|
| >d1j8hd1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), alpha-chain [TaxId: 9606]
Probab=97.10 E-value=0.00053 Score=52.61 Aligned_cols=72 Identities=18% Similarity=0.209 Sum_probs=50.1
Q ss_pred cccEEEEcCCeEEEEEEEeeecCCceEEEECC--ee---c----------CCCCceEEEE--cCCeEEEEEcCceecCCc
Q psy7039 362 IRDMTVLAGEEFTITVPFSGRPKPTPIWTVNG--DE---V----------SPDGRIKFET--SENQTIYRNKSAKRATDS 424 (516)
Q Consensus 362 ~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~--~~---l----------~~~~~~~~~~--~~~~~~l~i~~~~~~~~~ 424 (516)
+..+.+.+|+.++|.|.........+.|++.. .. + ....++.... ......|+|.++.+ .|+
T Consensus 7 p~~v~~~~G~~vtl~C~~s~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~-~Ds 85 (115)
T d1j8hd1 7 GSHVSVSEGALVLLRCNYSSSVPPYLFWYVQYPNQGLQLLLKYTSAATLVKGINGFEAEFKKSETSFHLTKPSAHM-SDA 85 (115)
T ss_dssp CSEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBGGGTBCCEEESSCCG-GGC
T ss_pred CCeEEEcCCCCEEEEEEeCCCCceeEEEEEccCCCcceeeeEEeecccccccCCCCEEEECCCCCEEEEeeccccc-cCC
Confidence 45678999999999999876555679998731 11 0 0112333322 23345799999999 999
Q ss_pred eEEEEEEEcC
Q psy7039 425 GSYTIQLVNT 434 (516)
Q Consensus 425 g~y~c~a~n~ 434 (516)
|.|.|.+...
T Consensus 86 a~YyCa~~~~ 95 (115)
T d1j8hd1 86 AEYFCAVSES 95 (115)
T ss_dssp EEEEEEEESS
T ss_pred ccceeeecCC
Confidence 9999998764
|
| >d1vcaa1 b.1.1.3 (A:91-199) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C2 set domains domain: Vascular cell adhesion molecule-1 (VCAM-1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.09 E-value=0.00061 Score=51.66 Aligned_cols=70 Identities=6% Similarity=-0.068 Sum_probs=43.2
Q ss_pred EEcCCeEEEEEEEee-ecCC--ceEEEECCeecCCCCceEEE-EcCC---eEEEEEcCceecCCceEEEEEEEcCCCc
Q psy7039 367 VLAGEEFTITVPFSG-RPKP--TPIWTVNGDEVSPDGRIKFE-TSEN---QTIYRNKSAKRATDSGSYTIQLVNTVGS 437 (516)
Q Consensus 367 v~~g~~~~l~C~~~g-~p~~--~i~W~~~~~~l~~~~~~~~~-~~~~---~~~l~i~~~~~~~~~g~y~c~a~n~~G~ 437 (516)
+..|+.++|.|.+.+ .|.+ .|.|++++..+......... ..+. .+.|.+.-... ++...|+|+|.+..+.
T Consensus 13 l~~G~~~~l~C~v~~~~P~~~~~i~W~~g~~~~~~~~~~~~~~~~~~~~~~s~l~~~~~~~-D~g~~ltC~a~~~~~~ 89 (109)
T d1vcaa1 13 LEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIE-DIGKVLVCRAKLHIDE 89 (109)
T ss_dssp EETTSCEEEEEEEEEEBSGGGEEEEEEETTEEEEEEECCSCCSSCCCEEEEEEEEECCCGG-GTTCEEEEEEEECSCC
T ss_pred ccCCCeEEEEeEeCCcCCCCceEEEEeccCceeeccccccccccCCcceeeEEEEccCChH-HCCcEEEEEEEcCcCC
Confidence 679999999999976 4543 58899988765311000000 0000 13466654444 5555899999998754
|
| >d1i8lc_ b.1.1.1 (C:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.09 E-value=0.00095 Score=51.36 Aligned_cols=27 Identities=26% Similarity=0.250 Sum_probs=22.8
Q ss_pred ecCCeeEEEeccCCCCCCeeEEEEEEc
Q psy7039 191 TTKSETVLDIPFCSRSDTGHYSLTLEN 217 (516)
Q Consensus 191 ~~~~~~~l~i~~~~~~d~g~Y~c~~~~ 217 (516)
.......|.|.+++.+|+|.|.|.+..
T Consensus 70 ~~~~~~~L~I~~l~~~Dsa~YyCa~~~ 96 (118)
T d1i8lc_ 70 SSGNQVNLTIQGLRAMDTGLYICKVEL 96 (118)
T ss_dssp BCSSEEEEEECSCCGGGCEEEEEEEEE
T ss_pred CCCCEEEEEeeccccCCCEEEEEeEec
Confidence 345567999999999999999998754
|
| >d1ncwl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]
Probab=97.09 E-value=0.0021 Score=48.73 Aligned_cols=71 Identities=17% Similarity=0.155 Sum_probs=51.0
Q ss_pred cccEEEEcCCeEEEEEEEeeec-----CCceEEEECC--ee------------cCCCCceEEEEcCCeEEEEEcCceecC
Q psy7039 362 IRDMTVLAGEEFTITVPFSGRP-----KPTPIWTVNG--DE------------VSPDGRIKFETSENQTIYRNKSAKRAT 422 (516)
Q Consensus 362 ~~~~~v~~g~~~~l~C~~~g~p-----~~~i~W~~~~--~~------------l~~~~~~~~~~~~~~~~l~i~~~~~~~ 422 (516)
+..+.+.+|+.++|.|...+.. ..-+.|++.. .. .....+|.....+....|.|.++.+ +
T Consensus 8 P~sls~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~pg~~~~~l~~~~~~~~~g~~~~fs~~~~~~~~~L~I~~~~~-e 86 (112)
T d1ncwl1 8 PKTISVTIGQPASISCKSSQRLLNSNGKTFLNWLLQRPGQSPKRLIYLGTKLDSGVPDRFTGSGSGTDFTLKISRVEA-E 86 (112)
T ss_dssp CSEEEEETTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCG-G
T ss_pred CCEEEECCCCCEEEEEEECcccccCCCCcccEEEEcCCCCceEEEEeccCcCCCCcCceEEeeCCCCEEEEEECcccc-C
Confidence 4567889999999999865322 2248898631 11 1123567666677778999999999 9
Q ss_pred CceEEEEEEEc
Q psy7039 423 DSGSYTIQLVN 433 (516)
Q Consensus 423 ~~g~y~c~a~n 433 (516)
|++.|.|...+
T Consensus 87 DsAvYYC~~~~ 97 (112)
T d1ncwl1 87 DLGVYYCWQGT 97 (112)
T ss_dssp GCEEEEEEECS
T ss_pred cCEeEEEEcCC
Confidence 99999996543
|
| >d1ac6a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]
Probab=97.08 E-value=0.00049 Score=52.32 Aligned_cols=73 Identities=12% Similarity=0.116 Sum_probs=47.8
Q ss_pred CcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEee--CCee------------eccC
Q psy7039 119 STLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSI--NGQV------------CQIG 184 (516)
Q Consensus 119 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~--~~~~------------~~~~ 184 (516)
..+..+.+.+|+.++|.|... ......+.|++ .+.. -...
T Consensus 5 Q~p~~~~~~~G~~vtl~C~~~--------------------------~~~~~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~ 58 (110)
T d1ac6a_ 5 QTEGQVALSEEDFLTIHCNYS--------------------------ASGYPALFWYVQYPGEGPQFLFRASRDKEKGSS 58 (110)
T ss_dssp ECCSEEEEETTEEEEECEEEE--------------------------CSSCCEEEEEEECTTSCCEEEEEECSTTCEEEE
T ss_pred eCCCeEEECCCCCEEEEEEec--------------------------CCCCcceEEEEcCCCCceEEeeeeeeecccCCC
Confidence 445668899999999999877 22223345554 1111 1112
Q ss_pred CceEEee--cCCeeEEEeccCCCCCCeeEEEEEEc
Q psy7039 185 GRADVQT--TKSETVLDIPFCSRSDTGHYSLTLEN 217 (516)
Q Consensus 185 ~~~~~~~--~~~~~~l~i~~~~~~d~g~Y~c~~~~ 217 (516)
.++.... .+....|.|.++..+|+|.|.|.+..
T Consensus 59 ~~f~~~~~~~~~~~~L~i~~~~~~Dsa~YyCA~~~ 93 (110)
T d1ac6a_ 59 RGFEATYNKEATSFHLQKASVQESDSAVYYCALSG 93 (110)
T ss_dssp TTEEEECBTTTTBCCEEEEEECGGGCEEEEEEEEE
T ss_pred CceeeeecCCCCEEeeeecCcCcCCCcccceeecC
Confidence 3444432 34467899999999999999998754
|
| >d1olla2 b.1.1.4 (A:96-188) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Ligand binding domain of NK receptor NKp46 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.07 E-value=0.00062 Score=49.79 Aligned_cols=62 Identities=10% Similarity=0.054 Sum_probs=44.7
Q ss_pred eEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEeecCCeeEEEeccC
Q psy7039 124 VKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFC 203 (516)
Q Consensus 124 ~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~ 203 (516)
-.|..|+.++|.|... .....+.+++++.... ...........+.|.++
T Consensus 13 ~~V~~G~~VTL~C~~~---------------------------~~~~~f~L~Keg~~~~----~~~~~~~~~a~F~i~~v 61 (93)
T d1olla2 13 PEVISGEKVTFYCRLD---------------------------TATSMFLLLKEGRSSH----VQRGYGKVQAEFPLGPV 61 (93)
T ss_dssp SEEETTCEEEEEEECS---------------------------SSCSEEEEEEESSSCE----EEEEECSSEEEEEEEEC
T ss_pred CcccCCCcEEEEECCC---------------------------CCCCEEEEEECCCccc----eeecCCCceeEEEeccc
Confidence 4578899999999875 3445677777654321 11222345678999999
Q ss_pred CCCCCeeEEEEEE
Q psy7039 204 SRSDTGHYSLTLE 216 (516)
Q Consensus 204 ~~~d~g~Y~c~~~ 216 (516)
+..|+|.|+|...
T Consensus 62 ~~~~~G~Y~C~~~ 74 (93)
T d1olla2 62 TTAHRGTYRCFGS 74 (93)
T ss_dssp CGGGCEEEEEECE
T ss_pred ChhcCceEEEEeE
Confidence 9999999999754
|
| >d1vcaa1 b.1.1.3 (A:91-199) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C2 set domains domain: Vascular cell adhesion molecule-1 (VCAM-1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.07 E-value=0.00075 Score=51.15 Aligned_cols=71 Identities=6% Similarity=-0.028 Sum_probs=44.6
Q ss_pred EecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCce--eeEEeeCCeeeccCCceEEe-ecCC---eeEEE
Q psy7039 126 IKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFL--NHGWSINGQVCQIGGRADVQ-TTKS---ETVLD 199 (516)
Q Consensus 126 v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~i~W~~~~~~~~~~~~~~~~-~~~~---~~~l~ 199 (516)
+.+|+.+.|.|.+.+ +.|.+ .|.|++++..+......... ..+. .+.|.
T Consensus 13 l~~G~~~~l~C~v~~-------------------------~~P~~~~~i~W~~g~~~~~~~~~~~~~~~~~~~~~~s~l~ 67 (109)
T d1vcaa1 13 LEAGKPITVKCSVAD-------------------------VYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVT 67 (109)
T ss_dssp EETTSCEEEEEEEEE-------------------------EBSGGGEEEEEEETTEEEEEEECCSCCSSCCCEEEEEEEE
T ss_pred ccCCCeEEEEeEeCC-------------------------cCCCCceEEEEeccCceeeccccccccccCCcceeeEEEE
Confidence 679999999999984 56754 68899998877532111100 0111 23455
Q ss_pred eccCCCCCCeeEEEEEEcCCCc
Q psy7039 200 IPFCSRSDTGHYSLTLENNLGT 221 (516)
Q Consensus 200 i~~~~~~d~g~Y~c~~~~~~g~ 221 (516)
+.....++...|+|.|++..+.
T Consensus 68 ~~~~~~D~g~~ltC~a~~~~~~ 89 (109)
T d1vcaa1 68 FTPVIEDIGKVLVCRAKLHIDE 89 (109)
T ss_dssp ECCCGGGTTCEEEEEEEECSCC
T ss_pred ccCChHHCCcEEEEEEEcCcCC
Confidence 5544444444699999976544
|
| >d1fo0a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]
Probab=97.06 E-value=0.0011 Score=50.73 Aligned_cols=75 Identities=12% Similarity=0.193 Sum_probs=51.5
Q ss_pred ccccEEEEcCCeEEEEEEEee-ecCCceEEEECC--ee----c---------CCCCceEEEE--cCCeEEEEEcCceecC
Q psy7039 361 SIRDMTVLAGEEFTITVPFSG-RPKPTPIWTVNG--DE----V---------SPDGRIKFET--SENQTIYRNKSAKRAT 422 (516)
Q Consensus 361 ~~~~~~v~~g~~~~l~C~~~g-~p~~~i~W~~~~--~~----l---------~~~~~~~~~~--~~~~~~l~i~~~~~~~ 422 (516)
.+..+.+.+|+.++|.|.... .....+.|++.. .. + ....++.... ......|.|.++.+ .
T Consensus 5 ~p~~v~~~~G~~Vtl~C~~~~~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~-~ 83 (115)
T d1fo0a_ 5 TQTSISVMEKTTVTMDCVYETQDSSYFLFWYKQTASGEIVFLIRQDSYKKENATVGHYSLNFQKPKSSIGLIITATQI-E 83 (115)
T ss_dssp CCCEEEEETTCCEEECCEECCCCSSCEEEEEEECTTCCEEEEEEEETTCCSCCEETTEEEEEEGGGTEEEEEECSCCG-G
T ss_pred cCCEEEEcCCCCEEEEEEEcCCCCCCCCEEEEeCCCCCCEEEEEEecceeecccCCceEEEEeccCCEEEEEECCCCc-c
Confidence 346678999999999998753 334468898731 10 0 0113444433 34567899999999 9
Q ss_pred CceEEEEEEEcCCC
Q psy7039 423 DSGSYTIQLVNTVG 436 (516)
Q Consensus 423 ~~g~y~c~a~n~~G 436 (516)
|+|.|.|.+....+
T Consensus 84 Dsa~YyCa~~~~~~ 97 (115)
T d1fo0a_ 84 DSAVYFCAMRGDYG 97 (115)
T ss_dssp GCEEEEEEEECCCT
T ss_pred ccccccceeecCCC
Confidence 99999999875543
|
| >d1tena_ b.1.2.1 (A:) Tenascin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Tenascin species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.06 E-value=0.00025 Score=51.71 Aligned_cols=42 Identities=19% Similarity=0.328 Sum_probs=35.6
Q ss_pred CCCCCCCcccccccCCeEEEEeeCCCCCCCCCcceEEEEEEecCCCc
Q psy7039 450 PSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATGV 496 (516)
Q Consensus 450 p~~P~~~l~~~~~~~~~~~l~W~~p~~~~~~~i~~Y~v~~~~~~~~~ 496 (516)
+++| .+|++..++.+++.|+|++|. +.+.+|.|+|+..+...
T Consensus 2 ld~P-~~l~v~~~s~~s~~l~W~~p~----~~~~~y~v~~~~~~~~~ 43 (90)
T d1tena_ 2 LDAP-SQIEVKDVTDTTALITWFKPL----AEIDGIELTYGIKDVPG 43 (90)
T ss_dssp CCCC-EEEEEESCCSSCEEEEEECCS----SCCSEEEEEEEETTCTT
T ss_pred CCCC-CCcEEEEecCCEEEEEEEeCc----eEeccEEEEEEEcCCCc
Confidence 5677 899999999999999999874 56899999999876544
|
| >d1fnha1 b.1.2.1 (A:3-92) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin, different Fn3 modules species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.06 E-value=0.0013 Score=47.70 Aligned_cols=78 Identities=13% Similarity=0.120 Sum_probs=51.6
Q ss_pred CceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceE
Q psy7039 324 PIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIK 403 (516)
Q Consensus 324 p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~ 403 (516)
.+.+..++.+++.|+|.+|.......+. .|..... ......
T Consensus 5 ~l~~~~v~~~si~l~W~~p~~~~~~~~i------------------------------------~~~~~~~---~~~~~~ 45 (90)
T d1fnha1 5 DLKFTQVTPTSLSAQWTPPNVQLTGYRV------------------------------------RVTPKEK---TGPMKE 45 (90)
T ss_dssp EEEEEEECSSCEEEEEECCSSCCSEEEE------------------------------------EEEESSS---CSCCCE
T ss_pred CEEEEEecCCEEEEEEEccceeccceEE------------------------------------EEEeeeC---CCceEE
Confidence 3889999999999999988653222111 1111111 011112
Q ss_pred EEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEE
Q psy7039 404 FETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSAS 441 (516)
Q Consensus 404 ~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s 441 (516)
........+++|.+|.+ +..|.|++.|.|..|.+..+
T Consensus 46 ~~~~~~~~~~~i~~L~p-~t~Y~~~V~a~n~~g~s~~~ 82 (90)
T d1fnha1 46 INLAPDSSSVVVSGLMV-ATKYEVSVYALKDTLTSRPA 82 (90)
T ss_dssp EEECTTCCEEEECSCCT-TCEEEEEEEEEETTEECCCE
T ss_pred EEeCCCCeEEEEecccC-ceEEEEEEEEEeCCCCcCCE
Confidence 23344556799999999 99999999999999875443
|
| >d1vesa_ b.1.1.1 (A:) Novel antigen receptor 12Y-2 {Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Novel antigen receptor 12Y-2 species: Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]
Probab=97.05 E-value=0.0019 Score=49.13 Aligned_cols=72 Identities=24% Similarity=0.284 Sum_probs=51.4
Q ss_pred cccEEEEcCCeEEEEEEEeeec--CCceEEEEC--Ce----ecCCCCceEEEE--cCCeEEEEEcCceecCCceEEEEEE
Q psy7039 362 IRDMTVLAGEEFTITVPFSGRP--KPTPIWTVN--GD----EVSPDGRIKFET--SENQTIYRNKSAKRATDSGSYTIQL 431 (516)
Q Consensus 362 ~~~~~v~~g~~~~l~C~~~g~p--~~~i~W~~~--~~----~l~~~~~~~~~~--~~~~~~l~i~~~~~~~~~g~y~c~a 431 (516)
+..+.+.+|+.++|.|.+.+.. ...+.|++. +. .+....++.... ......|+|.++.. +|+|.|.|.+
T Consensus 7 P~s~~~~~G~svtL~C~~s~~~~~~~~~~Wyrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~-~Dsa~YyCa~ 85 (113)
T d1vesa_ 7 PRTATKETGESLTINCVLRDASFELKDTGWYRTKLGSTNEQSISIGGRYVETVNKGSKSFSLRISDLRV-EDSGTYKCQA 85 (113)
T ss_dssp CSEEEECTTCCEEEEEEEESCSSCCCEEEEEEEETTCCCCEECCCBTTEEEEEETTTTEEEEEECSCCG-GGCEEEEEEE
T ss_pred CCEEEEcCCCCEEEEEEECCCcccCCccceeeeeccccceeeeeecccccceeECCCCceeeeeccccc-CCcceEeeee
Confidence 4567889999999999986543 346899863 21 223345555543 23446899999999 9999999998
Q ss_pred EcC
Q psy7039 432 VNT 434 (516)
Q Consensus 432 ~n~ 434 (516)
...
T Consensus 86 ~~~ 88 (113)
T d1vesa_ 86 FYS 88 (113)
T ss_dssp EEE
T ss_pred ecc
Confidence 643
|
| >d1j8he1 b.1.1.1 (E:2-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=97.02 E-value=0.0011 Score=50.48 Aligned_cols=84 Identities=11% Similarity=0.046 Sum_probs=48.2
Q ss_pred CcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCc-CceeeEEeeCC-eee---ccCCceE-Eeec
Q psy7039 119 STLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSE-PFLNHGWSING-QVC---QIGGRAD-VQTT 192 (516)
Q Consensus 119 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~i~W~~~~-~~~---~~~~~~~-~~~~ 192 (516)
..|..+.+.+|++++|.|.... ....+-|++... ..+.+..+..+ ... ....++. .+..
T Consensus 5 QsP~~~~~~~G~~v~l~C~~~~---------------~~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 69 (113)
T d1j8he1 5 QSSRYLVKRTGEKVFLECVQDM---------------DHENMFWYRQDPGLGLRLIYFSYDVKMKEKGDIPEGYSVSREK 69 (113)
T ss_dssp ESCSEEEEETTCCEEECEEESS---------------CCSEEEEEEEETTTEEEEEEEESSTTCCEECSCCTTEEEECSS
T ss_pred ccCCEEEECCCCCEEEEEEEcC---------------CccEEEeEEecCCCCcceeeeeeeeeeeecccccccceEEecc
Confidence 3456678899999999997650 112234554321 12222222111 100 0112232 2234
Q ss_pred CCeeEEEeccCCCCCCeeEEEEEEc
Q psy7039 193 KSETVLDIPFCSRSDTGHYSLTLEN 217 (516)
Q Consensus 193 ~~~~~l~i~~~~~~d~g~Y~c~~~~ 217 (516)
+....|.|.+++.+|+|.|.|.+..
T Consensus 70 ~~~~~L~i~~~~~~Dsa~YyCa~~~ 94 (113)
T d1j8he1 70 KERFSLILESASTNQTSMYLCASSS 94 (113)
T ss_dssp TTBCEEEESSCCGGGCEEEEEEEEC
T ss_pred CcEeeeEeccCccCCcccEEeeEcc
Confidence 4567899999999999999998764
|
| >d1j05a_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]
Probab=97.02 E-value=0.00083 Score=51.04 Aligned_cols=72 Identities=15% Similarity=0.100 Sum_probs=51.4
Q ss_pred cccEEEEcCCeEEEEEEEeee----cCCceEEEEC--Ceec------------CCCCceEEEEcCCeEEEEEcCceecCC
Q psy7039 362 IRDMTVLAGEEFTITVPFSGR----PKPTPIWTVN--GDEV------------SPDGRIKFETSENQTIYRNKSAKRATD 423 (516)
Q Consensus 362 ~~~~~v~~g~~~~l~C~~~g~----p~~~i~W~~~--~~~l------------~~~~~~~~~~~~~~~~l~i~~~~~~~~ 423 (516)
+..+.+.+|+.++|.|..... ....+.|++. +... ....++....+.....|.|.++.+ +|
T Consensus 8 P~~l~v~~G~svtl~C~~s~s~~~~~~~~~~WYrq~~g~~p~~liy~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~-~D 86 (111)
T d1j05a_ 8 PASLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSRTDFTLIIDPVEA-DD 86 (111)
T ss_dssp CSEEECCTTSCEEEEEEESSCCBSSSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEECSSSEEEEEESSCCG-GG
T ss_pred CCEEEECCCCCEEEEEEeccCCccCCceeEEEEEccCCCCCEEEEEeeccccCCCCCcEEEecCCCEEEEEEccccc-cc
Confidence 456778899999999987432 1224889873 2110 123466666667778999999999 99
Q ss_pred ceEEEEEEEcC
Q psy7039 424 SGSYTIQLVNT 434 (516)
Q Consensus 424 ~g~y~c~a~n~ 434 (516)
++.|.|.+.+.
T Consensus 87 sa~YyCa~~~~ 97 (111)
T d1j05a_ 87 VATYYCQQTNE 97 (111)
T ss_dssp CEEEEEEECSS
T ss_pred CccEEEeecCC
Confidence 99999987643
|
| >d2ij0c1 b.1.1.1 (C:1-117) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=97.01 E-value=0.0013 Score=50.45 Aligned_cols=74 Identities=18% Similarity=0.165 Sum_probs=52.6
Q ss_pred cccEEEEcCCeEEEEEEEeeecCCceEEEEC--Cee--------------c---CCCCceEEEE-cCCeEEEEEcCceec
Q psy7039 362 IRDMTVLAGEEFTITVPFSGRPKPTPIWTVN--GDE--------------V---SPDGRIKFET-SENQTIYRNKSAKRA 421 (516)
Q Consensus 362 ~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~--~~~--------------l---~~~~~~~~~~-~~~~~~l~i~~~~~~ 421 (516)
+....+.+|+.++|.|...+.....+.|++. +.. . ....++.... +.....|.|.++.+
T Consensus 8 P~~~~~~~G~~v~L~C~~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~L~i~~~~~- 86 (118)
T d2ij0c1 8 PSMVIVKSGTSVKIECRSLDTNIHTMFWYRQFPKQSLMLMATSHQGFNAIYEQGVVKDKFLINHASPTLSTLTVTSAHP- 86 (118)
T ss_dssp CSEEEECTTCCEEEEEEECSSCCSEEEEEEECTTSCEEEEEEEETTSCCEECTTCCTTTEEEEECSSSEEEEEECSCCG-
T ss_pred CCeEEEcCCCCEEEEEEEcCCcccEEEEEEEcccccceeeeeccccccceeccccccccceeecccccccccccccccc-
Confidence 4556789999999999987665667899873 110 0 0134555543 34456899999999
Q ss_pred CCceEEEEEEEcCCC
Q psy7039 422 TDSGSYTIQLVNTVG 436 (516)
Q Consensus 422 ~~~g~y~c~a~n~~G 436 (516)
+|++.|.|.+.-..|
T Consensus 87 ~Dsa~YyCa~~~~~~ 101 (118)
T d2ij0c1 87 EDSGFYVCSALAGSG 101 (118)
T ss_dssp GGCEEEEEEEECSSC
T ss_pred ccCceEEEEEecCCC
Confidence 999999999875443
|
| >d1ogae1 b.1.1.1 (E:5-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=97.01 E-value=0.00095 Score=51.01 Aligned_cols=84 Identities=13% Similarity=0.086 Sum_probs=47.2
Q ss_pred CcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCc-CceeeEEee-CCee--e-ccCCceEEe-ec
Q psy7039 119 STLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSE-PFLNHGWSI-NGQV--C-QIGGRADVQ-TT 192 (516)
Q Consensus 119 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~i~W~~-~~~~--~-~~~~~~~~~-~~ 192 (516)
..|..+.+.+|++++|.|... -....+-|++... ..+.+..+. .... . ....++... ..
T Consensus 4 QsP~~~~~~~G~svtl~C~~s---------------~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 68 (114)
T d1ogae1 4 QSPKYLFRKEGQNVTLSCEQN---------------LNHDAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVSREK 68 (114)
T ss_dssp CSCSEEEEETTCCEEECCEEC---------------SCCSEEEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEECCSS
T ss_pred EcCCeEEEcCCCCEEEEEEEe---------------cCCCcEEEEeeccccCCcceeeeeeeeccccccCCCceEEEccc
Confidence 345668899999999999876 0122344554311 011111111 1110 0 111222222 23
Q ss_pred CCeeEEEeccCCCCCCeeEEEEEEc
Q psy7039 193 KSETVLDIPFCSRSDTGHYSLTLEN 217 (516)
Q Consensus 193 ~~~~~l~i~~~~~~d~g~Y~c~~~~ 217 (516)
.....|.|.+++.+|+|.|.|....
T Consensus 69 ~~~~~L~I~~~~~~DSa~YyCa~~~ 93 (114)
T d1ogae1 69 KESFPLTVTSAQKNPTAFYLCASSS 93 (114)
T ss_dssp TTBCCEEECSCCSCCCEEEEEEEES
T ss_pred CCeEEEEECcCCcCCceeEEEeecc
Confidence 4456899999999999999997654
|
| >d1qr4a2 b.1.2.1 (A:88-175) Tenascin {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Tenascin species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=97.00 E-value=0.00042 Score=50.28 Aligned_cols=40 Identities=35% Similarity=0.611 Sum_probs=34.9
Q ss_pred CCCCCcccccccCCeEEEEeeCCCCCCCCCcceEEEEEEecCCCc
Q psy7039 452 PPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATGV 496 (516)
Q Consensus 452 ~P~~~l~~~~~~~~~~~l~W~~p~~~~~~~i~~Y~v~~~~~~~~~ 496 (516)
+| .+|++..++.+++.|+|++|. +.+.+|.|+|+..+...
T Consensus 3 ~P-~~l~v~~v~~~s~~l~W~~~~----~~~~~Y~i~~~~~~~~~ 42 (88)
T d1qr4a2 3 SP-KGISFSDITENSATVSWTPPR----SRVDSYRVSYVPITGGT 42 (88)
T ss_dssp CC-SCEEEESCCSSCEEEEECCCS----SCCSEEEEEEEETTCCC
T ss_pred CC-cceEEEEecCCEEEEEEEccc----EeeceEEEEEEeccCCc
Confidence 46 789999999999999999874 56999999999987766
|
| >d1fnfa2 b.1.2.1 (A:1236-1326) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin, different Fn3 modules species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.00 E-value=0.0025 Score=46.13 Aligned_cols=76 Identities=11% Similarity=0.212 Sum_probs=52.0
Q ss_pred ceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEE
Q psy7039 325 IDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKF 404 (516)
Q Consensus 325 ~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~ 404 (516)
+.+..++.+++.|+|++|.+ ..+.+|. +.|...+. .......
T Consensus 7 l~~~~~~~~sv~l~W~~p~~---~~~~~y~--------------------------------v~y~~~~~---~~~~~~~ 48 (91)
T d1fnfa2 7 LRFTNIGPDTMRVTWAPPPS---IDLTNFL--------------------------------VRYSPVKN---EEDVAEL 48 (91)
T ss_dssp EEEESCCSSCEEEEEECCTT---CCCSEEE--------------------------------EEEEETTC---TTCCEEE
T ss_pred eEEEEeCCCEEEEEEEecCC---CCcceeE--------------------------------EEEEECCC---CccEEEE
Confidence 78888999999999998743 2344541 23322221 1122233
Q ss_pred EEcCCeEEEEEcCceecCCceEEEEEEEcCCCcee
Q psy7039 405 ETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDS 439 (516)
Q Consensus 405 ~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s 439 (516)
........+.|.+|.+ +..|.|++.|.|..|.+.
T Consensus 49 ~~~~~~~~~~i~~L~p-~t~Y~~~V~a~~~~g~S~ 82 (91)
T d1fnfa2 49 SISPSDNAVVLTNLLP-GTEYVVSVSSVYEQHEST 82 (91)
T ss_dssp EECTTCCEEEECSCCT-TCEEEEEEEEEETTEECC
T ss_pred EeCCCceEEEEeceeC-CCEEEEEEEEEcCCCCCC
Confidence 3445566899999999 999999999999988643
|
| >d1qr4a1 b.1.2.1 (A:1-87) Tenascin {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Tenascin species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=97.00 E-value=0.00029 Score=50.97 Aligned_cols=41 Identities=27% Similarity=0.464 Sum_probs=34.6
Q ss_pred CCCCCCcccccccCCeEEEEeeCCCCCCCCCcceEEEEEEecCCCc
Q psy7039 451 SPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATGV 496 (516)
Q Consensus 451 ~~P~~~l~~~~~~~~~~~l~W~~p~~~~~~~i~~Y~v~~~~~~~~~ 496 (516)
++| .+|++..++.+++.|+|++|. +.+.+|.|+|+..+...
T Consensus 1 DaP-~~l~v~~~t~~sv~v~W~~p~----~~~~~Y~v~~~~~~~~~ 41 (87)
T d1qr4a1 1 DNP-KDLEVSDPTETTLSLRWRRPV----AKFDRYRLTYVSPSGKK 41 (87)
T ss_dssp CCC-EEEEEESCCSSEEEEEEECCS----SCCSEEEEEEECTTCCE
T ss_pred CcC-cCcEEEEecCCEEEEEEECCC----CCcceeEEEeecCCcce
Confidence 356 789999999999999999874 45899999999877655
|
| >d1tdqa3 b.1.2.1 (A:186-271) Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Tenascin species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.00 E-value=0.00034 Score=50.50 Aligned_cols=43 Identities=28% Similarity=0.364 Sum_probs=35.4
Q ss_pred CCCCCCcccccccCCeEEEEeeCCCCCCCCCcceEEEEEEecCCCcee
Q psy7039 451 SPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATGVSD 498 (516)
Q Consensus 451 ~~P~~~l~~~~~~~~~~~l~W~~p~~~~~~~i~~Y~v~~~~~~~~~~~ 498 (516)
++| .++++..++.+++.|+|++|. +.+.+|.|+|+..+.....
T Consensus 2 ~~P-~nl~v~~~~~~s~~l~W~~p~----~~~~~Y~v~~~~~~~~~~~ 44 (86)
T d1tdqa3 2 DSP-RDLMVTASSETSISLIWTKAS----GPIDHYRITFTPSSGISSE 44 (86)
T ss_dssp CCC-EEEEEEEECSSCEEEEEECCC----SCCSEEEEEEECSSSCCEE
T ss_pred ccC-CCCEEEEecCCEEEEEEeCCC----CCccceEEEEecccccceE
Confidence 356 789999999999999999874 4689999999987765533
|
| >d1x5ja1 b.1.2.1 (A:8-107) Neogenin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Neogenin species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.00 E-value=0.00042 Score=51.56 Aligned_cols=88 Identities=11% Similarity=0.137 Sum_probs=53.1
Q ss_pred ceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEE
Q psy7039 325 IDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKF 404 (516)
Q Consensus 325 ~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~ 404 (516)
+.+..++.+++.|+|++|....+..+..+ ..+ .+.|...+.. .... .
T Consensus 8 v~~~~~s~tsi~v~W~~p~~~~~~~~~~~-------------------~~y----------~v~~~~~~~~---~~~~-~ 54 (100)
T d1x5ja1 8 VQASILSHDTIRITWADNSLPKHQKITDS-------------------RYY----------TVRWKTNIPA---NTKY-K 54 (100)
T ss_dssp EEEEEEETTEEEEEEECTTSCSSSCCCSS-------------------CEE----------EEEECBSSSS---SCCC-E
T ss_pred eEEEEecCCEEEEEEcCCccccccceeeE-------------------EEE----------EEEeeecCCC---ccee-E
Confidence 88889999999999998764433221111 000 1122222211 1111 1
Q ss_pred EEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEEEE
Q psy7039 405 ETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYV 446 (516)
Q Consensus 405 ~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~v 446 (516)
........++|.+|.+ ...|.|++.|.|..|.+..+..+.+
T Consensus 55 ~~~~~~~~~~i~~L~p-~t~Y~~~V~a~n~~g~s~~S~~~~~ 95 (100)
T d1x5ja1 55 NANATTLSYLVTGLKP-NTLYEFSVMVTKGRRSSTWSMTAHG 95 (100)
T ss_dssp ECCBCSSEEEEESCCT-TCEECCEEEEECSSCBCCCCCCCCE
T ss_pred ecCCCccEEEECCCCC-CCEEEEEEEEEeCCcCcCCCCeEEE
Confidence 1122334688999999 9999999999999998655544433
|
| >d2gj6d1 b.1.1.1 (D:15-114) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), beta-chain [TaxId: 10090]
Probab=97.00 E-value=0.00093 Score=49.04 Aligned_cols=64 Identities=16% Similarity=0.277 Sum_probs=45.1
Q ss_pred CCeEEEEEEEeeecCCceEEEECC--ee-----------cCCCCceEEE--EcCCeEEEEEcCceecCCceEEEEEEEcC
Q psy7039 370 GEEFTITVPFSGRPKPTPIWTVNG--DE-----------VSPDGRIKFE--TSENQTIYRNKSAKRATDSGSYTIQLVNT 434 (516)
Q Consensus 370 g~~~~l~C~~~g~p~~~i~W~~~~--~~-----------l~~~~~~~~~--~~~~~~~l~i~~~~~~~~~g~y~c~a~n~ 434 (516)
|+.++|.|.........+.|++.. .. .....++... ......+|.|.++.+ .|+|.|.|.+...
T Consensus 1 G~~vtl~C~~~~~~~~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~rf~~~~~~~~~~~sL~I~~~~~-~Dsg~YyCa~~~~ 79 (94)
T d2gj6d1 1 GAIASLNCTYSDRGSQSFFWYRQYSGKSPELIMSIYSNGDKEDGRFTAQLNKASQYVSLLIRDSQP-SDSATYLCAVTTD 79 (94)
T ss_dssp TSCEEEEEEECCTTCCEEEEEEECTTSCCEEEEEECSSEEEEETTEEEEEETTTTEEEEEECSCCG-GGCEEEEEEEESS
T ss_pred CccEEEEEEEccccCCcEEEEEECCCcccccceeeeeeccCCCCcEEEEecCCCCEEeEEeecccc-CcCccceeeEecC
Confidence 688999999876666678998732 10 0112345443 234457899999999 9999999998754
|
| >d2cuia1 b.1.2.1 (A:6-106) Tenascin-X {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Tenascin-X species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.99 E-value=0.0027 Score=46.96 Aligned_cols=81 Identities=12% Similarity=0.103 Sum_probs=54.0
Q ss_pred CCceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeeecCCceEEEECCee-----cC
Q psy7039 323 GPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDE-----VS 397 (516)
Q Consensus 323 ~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~-----l~ 397 (516)
..+.+..++.+++.|+|.+|.++ +.+|. |.|...+.. ..
T Consensus 8 ~~l~v~~~t~~sv~v~W~pp~~~----~~~y~--------------------------------i~~~~~~~~~~~~~~~ 51 (101)
T d2cuia1 8 SQLSVTDVTTSSLRLNWEAPPGA----FDSFL--------------------------------LRFGVPSPSTLEPHPR 51 (101)
T ss_dssp CCCEEESCCSSCEEEECCCCTTS----CSEEE--------------------------------EEEECCCCSSSCCCSS
T ss_pred CCcEEEEECCCEEEEEEEecccc----ccceE--------------------------------EEEEecCCCceeeccC
Confidence 34999999999999999988643 33331 111111100 01
Q ss_pred CCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeE
Q psy7039 398 PDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSA 440 (516)
Q Consensus 398 ~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~ 440 (516)
..........+...++.|.+|.+ ...|.|++.|.|..|.+..
T Consensus 52 ~~~~~~~~~~~~~~~~~v~~L~p-~t~Y~~~V~a~~~~g~g~~ 93 (101)
T d2cuia1 52 PLLQRELMVPGTRHSAVLRDLRS-GTLYSLTLYGLRGPHKADS 93 (101)
T ss_dssp CCCCEEEEEETTCCEEEECSCCT-TCEEEEEEEEECSSSEEEE
T ss_pred CcceeEeecccceeEEEeCCCCc-CCEEEEEEEEEeCCcEeCC
Confidence 12223334445667899999999 9999999999999998654
|
| >d1mjul1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]
Probab=96.99 E-value=0.0016 Score=49.48 Aligned_cols=71 Identities=17% Similarity=0.161 Sum_probs=51.9
Q ss_pred ccccEEEEcCCeEEEEEEEeeec-----CCceEEEECC--ee------------cCCCCceEEEEcCCeEEEEEcCceec
Q psy7039 361 SIRDMTVLAGEEFTITVPFSGRP-----KPTPIWTVNG--DE------------VSPDGRIKFETSENQTIYRNKSAKRA 421 (516)
Q Consensus 361 ~~~~~~v~~g~~~~l~C~~~g~p-----~~~i~W~~~~--~~------------l~~~~~~~~~~~~~~~~l~i~~~~~~ 421 (516)
.+..+.+.+|+.++|.|...+.. ...+.|++.. .. .....++..........|.|.++.+
T Consensus 7 ~p~slsv~~G~svtL~C~~s~~~~~~~~~~~i~WYrq~~g~~~~~liy~~~~~~~~~~~r~~~~~s~~~~~L~Is~~~~- 85 (112)
T d1mjul1 7 AAPSVPVTPGESVSISCRSSKSLLHSNGNTYLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSGSGSGTAFTLRISRVEA- 85 (112)
T ss_dssp CCSEEEECTTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEECSSEEEEEESSCCG-
T ss_pred cCCEEEECCCCCEEEEEEECCCCccCCCCceeEEEECCCCCcEEEEEEeCCcccCCCCCcEEeecCCCEEEEEECCccc-
Confidence 34567889999999999876531 2358898631 11 1123467777777888999999999
Q ss_pred CCceEEEEEEE
Q psy7039 422 TDSGSYTIQLV 432 (516)
Q Consensus 422 ~~~g~y~c~a~ 432 (516)
+|++.|.|...
T Consensus 86 ~DsAvYyCa~~ 96 (112)
T d1mjul1 86 EDVGVYYCLQH 96 (112)
T ss_dssp GGCEEEEEEEC
T ss_pred cCCceEEEEeC
Confidence 99999999543
|
| >d1i9ea_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]
Probab=96.98 E-value=0.00037 Score=53.52 Aligned_cols=72 Identities=19% Similarity=0.257 Sum_probs=48.6
Q ss_pred cccEEEEcCCeEEEEEEEeeecCCceEEEEC--Cee---c------------CCCCceEEEEcCCeEEEEEcCceecCCc
Q psy7039 362 IRDMTVLAGEEFTITVPFSGRPKPTPIWTVN--GDE---V------------SPDGRIKFETSENQTIYRNKSAKRATDS 424 (516)
Q Consensus 362 ~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~--~~~---l------------~~~~~~~~~~~~~~~~l~i~~~~~~~~~ 424 (516)
+..+.+.+|+.++|.|.........+.|++. +.. + ....++..........|+|.++.+ +|+
T Consensus 7 ~~~v~v~~G~svtl~C~~~~~~~~~~~Wyrq~pg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~-~Ds 85 (115)
T d1i9ea_ 7 DARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGLQLLLKYYSGDPVVQGVNGFEAEFSKSNSSFHLRKASVHW-SDS 85 (115)
T ss_dssp CSEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBTTTTBCCEEESSCCG-GGC
T ss_pred CCeEEECCCCCEEEEEEEcCCCCCCEEEEEECCCCceeeeeeeccceeccccCcceeEEEeCcCCEEEEecccccc-ccc
Confidence 4567899999999999987655567788862 111 0 001122222233445799999999 999
Q ss_pred eEEEEEEEcC
Q psy7039 425 GSYTIQLVNT 434 (516)
Q Consensus 425 g~y~c~a~n~ 434 (516)
|.|.|.+...
T Consensus 86 g~YyCa~~~~ 95 (115)
T d1i9ea_ 86 AVYFCAVSGF 95 (115)
T ss_dssp EEEEEEEEET
T ss_pred ceecccccCC
Confidence 9999987643
|
| >d1ujta_ b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: KIAA1568 protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.96 E-value=0.0015 Score=50.44 Aligned_cols=41 Identities=7% Similarity=-0.185 Sum_probs=33.1
Q ss_pred CeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEEEEecCC
Q psy7039 409 NQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKP 450 (516)
Q Consensus 409 ~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~v~~~p 450 (516)
...+++|.+|.+ ...|.|++.|.|..|.+..+..+.+.+.+
T Consensus 73 ~~~s~~i~~L~p-~t~Y~f~V~A~n~~G~G~~S~~~~~~T~e 113 (120)
T d1ujta_ 73 TERSAVLVNLKK-GVTYEIKVRPYFNEFQGMDSESKTVRTTE 113 (120)
T ss_dssp TCCEEEEESCCS-SEEEEEEEEEESSSCCCCCCCCEEEEECS
T ss_pred ceeEEEECCCCC-CCEEEEEEEEEeCCcCcCCCCCEEEEeCC
Confidence 345788999999 99999999999999987776666665544
|
| >d2dtge2 b.1.2.1 (E:593-807) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Insulin receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.96 E-value=0.00025 Score=59.61 Aligned_cols=95 Identities=14% Similarity=0.034 Sum_probs=37.1
Q ss_pred CCCCCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCCCeEEeEEeecCCcEEEeCCCcCCCeEEEEEEEec
Q psy7039 12 DEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVVVPAGETSCTVPGLIEGETYQFQVRAVN 91 (516)
Q Consensus 12 ~~p~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~~~a~n 91 (516)
.++..+.++.+.......+.+.|..+.... .....|.+.+...+. .........+..+++|.+|++++.|.|+++|.|
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n 176 (196)
T d2dtge2 99 QILKELEESSFRKTFEDYLHNVVFVPRPSR-KRRSLGDVGNAGNNE-EHRPFEKVVNKESLVISGLRHFTGYRIELQACN 176 (196)
T ss_dssp -----------------------------------------------CCSCSCEECSCSEEEECSSCSSCEEEECCEEES
T ss_pred ccccCCcCcEEEeccCCceeecccCcCCCc-cceEEEEEEeecCCC-ccEEEEeccceEEEEECCCCCCCEEEEEEEEEE
Confidence 344455666666666777778887753111 112223332222222 111223335688999999999999999999999
Q ss_pred CCCCCCCCCCCcceEec
Q psy7039 92 AAGPGEASKPTAPIVAK 108 (516)
Q Consensus 92 ~~g~~~~s~~~~~~~~~ 108 (516)
..|.+.++..+..+..+
T Consensus 177 ~~~~~~~~s~s~~~~~r 193 (196)
T d2dtge2 177 QDTPEERCSVAAYVSAR 193 (196)
T ss_dssp CSSSSCCBCCCCCEEEE
T ss_pred CCCCCCCccCcceEEee
Confidence 99988776555555544
|
| >d1hxmb1 b.1.1.1 (B:1-123) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), delta-chain [TaxId: 9606]
Probab=96.96 E-value=0.0022 Score=49.54 Aligned_cols=84 Identities=14% Similarity=0.126 Sum_probs=51.0
Q ss_pred cccceEEecCCeEEEEEeeeeccccccCccccccc-cccCccceeecC--cCceeeEEe-eCCeeec----cCCceEEee
Q psy7039 120 TLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGV-RANSTKGWVKLS--EPFLNHGWS-INGQVCQ----IGGRADVQT 191 (516)
Q Consensus 120 ~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~p~~~i~W~-~~~~~~~----~~~~~~~~~ 191 (516)
++..+.+.+|++++|.|.+++ . -.+..+.|++.. ...-.+.+. .++.... ...|+.+..
T Consensus 7 p~~s~t~~~g~t~~LsC~~sg-------------~~~s~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~ 73 (123)
T d1hxmb1 7 PQISSTKTLSKTARLECVVSG-------------ITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDR 73 (123)
T ss_dssp CCSEEEEETTCCEEEEEEEES-------------SCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEE
T ss_pred CCCeEEeCCCCCEEEEEEEcC-------------CCcccCeEEEEEECCCCCceEeeecccccccccccccccceeEEee
Confidence 334577889999999999871 1 123345676642 111112221 1222211 124676654
Q ss_pred c--CCeeEEEeccCCCCCCeeEEEEEE
Q psy7039 192 T--KSETVLDIPFCSRSDTGHYSLTLE 216 (516)
Q Consensus 192 ~--~~~~~l~i~~~~~~d~g~Y~c~~~ 216 (516)
. .....|.|.+++.+|++.|.|...
T Consensus 74 ~~~~~~~~L~i~~l~~~Dsa~YyCA~~ 100 (123)
T d1hxmb1 74 IPETSTSTLTIHNVEKQDIATYYCALW 100 (123)
T ss_dssp ETTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred eccccceeecccccccccCcEEEEeee
Confidence 3 345689999999999999999864
|
| >d1kgcd1 b.1.1.1 (D:2-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), alpha-chain [TaxId: 9606]
Probab=96.95 E-value=0.001 Score=50.60 Aligned_cols=72 Identities=11% Similarity=0.023 Sum_probs=50.1
Q ss_pred cccEEEEcCCeEEEEEEEeeecC-CceEEEECC--eec------------CCCCceEEEEcCCeEEEEEcCceecCCceE
Q psy7039 362 IRDMTVLAGEEFTITVPFSGRPK-PTPIWTVNG--DEV------------SPDGRIKFETSENQTIYRNKSAKRATDSGS 426 (516)
Q Consensus 362 ~~~~~v~~g~~~~l~C~~~g~p~-~~i~W~~~~--~~l------------~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~ 426 (516)
+..+.+.+|+.++|.|...+... ..+.|++.. ..+ ....++.+..+.....|+|.++.+ .|+|.
T Consensus 5 P~~~~~~~G~svtl~C~~s~~~~~~~~~WYrQ~pg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~-~Dsa~ 83 (112)
T d1kgcd1 5 PNSMESNEEEPVHLPCNHSTISGTDYIHWYRQLPSQGPEYVIHGLTSNVNNRMASLAIAEDRKSSTLILHRATL-RDAAV 83 (112)
T ss_dssp CSEEEEETTSCEEEEEEESCCCTTCCEEEEEECTTSCCEEEEEESSSSEECSSEEEEECTTSSEEEEEESSCCG-GGCEE
T ss_pred CCEEEECCCCCEEEEEEEeCCCccccEEEEEECCCCCcceeeeecceeccccccceeecccCCeeEEEEeeccc-cccee
Confidence 34578899999999999865443 458999832 111 011234444445567899999999 99999
Q ss_pred EEEEEEcC
Q psy7039 427 YTIQLVNT 434 (516)
Q Consensus 427 y~c~a~n~ 434 (516)
|.|.+...
T Consensus 84 YyCa~~~~ 91 (112)
T d1kgcd1 84 YYCILPLA 91 (112)
T ss_dssp EEEECCCC
T ss_pred EeeeEecC
Confidence 99987543
|
| >d1olla2 b.1.1.4 (A:96-188) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Ligand binding domain of NK receptor NKp46 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.94 E-value=0.0016 Score=47.42 Aligned_cols=64 Identities=13% Similarity=0.141 Sum_probs=46.6
Q ss_pred ccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEE
Q psy7039 363 RDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLV 432 (516)
Q Consensus 363 ~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~ 432 (516)
....+..|++++|.|.... ....+.++|+|... .......+....+.|.++.. .|+|.|+|...
T Consensus 11 P~~~V~~G~~VTL~C~~~~-~~~~f~L~Keg~~~----~~~~~~~~~~a~F~i~~v~~-~~~G~Y~C~~~ 74 (93)
T d1olla2 11 PGPEVISGEKVTFYCRLDT-ATSMFLLLKEGRSS----HVQRGYGKVQAEFPLGPVTT-AHRGTYRCFGS 74 (93)
T ss_dssp SCSEEETTCEEEEEEECSS-SCSEEEEEEESSSC----EEEEEECSSEEEEEEEECCG-GGCEEEEEECE
T ss_pred CCCcccCCCcEEEEECCCC-CCCEEEEEECCCcc----ceeecCCCceeEEEecccCh-hcCceEEEEeE
Confidence 3457899999999998642 33478888887532 12223345667899999999 99999999743
|
| >d2b5ic1 b.1.2.1 (C:130-224) Cytokine receptor common gamma chain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Cytokine receptor common gamma chain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.93 E-value=0.00043 Score=51.05 Aligned_cols=44 Identities=14% Similarity=0.203 Sum_probs=37.8
Q ss_pred CCCCCCCCcccccccCCeEEEEeeCCCCCCCCCcceEEEEEEecCCCc
Q psy7039 449 KPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATGV 496 (516)
Q Consensus 449 ~p~~P~~~l~~~~~~~~~~~l~W~~p~~~~~~~i~~Y~v~~~~~~~~~ 496 (516)
+|.+| .+|++..++.+++.|+|++|. .+.+..|.|+|+..+...
T Consensus 2 ~P~~P-~nl~v~~~~~~~v~l~W~~p~---~~~~~~y~v~y~~~~~~~ 45 (95)
T d2b5ic1 2 IPWAP-ENLTLHKLSESQLELNWNNRF---LNHCLEHLVQYRTDWDHS 45 (95)
T ss_dssp ECCCC-EEEEEEEEETTEEEEEEECSS---CSTTCEEEEEEEETTCSS
T ss_pred CCcCC-CCCEEEEEeCCEEEEEECCCC---CceeEEEEEEEEcCCCce
Confidence 48888 899999999999999999875 245788999999987766
|
| >d1j8ka_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin, different Fn3 modules species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.93 E-value=0.0015 Score=47.78 Aligned_cols=32 Identities=0% Similarity=-0.067 Sum_probs=26.7
Q ss_pred CeEEEEEcCceecCCceEEEEEEEcCCCceeEE
Q psy7039 409 NQTIYRNKSAKRATDSGSYTIQLVNTVGSDSAS 441 (516)
Q Consensus 409 ~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s 441 (516)
....+.|.+|.+ ...|.|++.|.|..|.+...
T Consensus 53 ~~~~~~i~~L~p-~t~Y~~~V~a~~~~g~S~p~ 84 (94)
T d1j8ka_ 53 EEDTAELQGLRP-GSEYTVSVVALHDDMESQPL 84 (94)
T ss_dssp SCCEEEECSCCC-CSEEEEEEEECSSSCCCCCE
T ss_pred CccEEEECCCCC-CCEEEEEEEEEeCCCCcCCE
Confidence 345789999999 99999999999998875443
|
| >d1n4xl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]
Probab=96.92 E-value=0.0018 Score=49.20 Aligned_cols=72 Identities=14% Similarity=0.062 Sum_probs=52.5
Q ss_pred cccEEEEcCCeEEEEEEEeeec-----CCceEEEECC--e------------ecCCCCceEEEEcCCeEEEEEcCceecC
Q psy7039 362 IRDMTVLAGEEFTITVPFSGRP-----KPTPIWTVNG--D------------EVSPDGRIKFETSENQTIYRNKSAKRAT 422 (516)
Q Consensus 362 ~~~~~v~~g~~~~l~C~~~g~p-----~~~i~W~~~~--~------------~l~~~~~~~~~~~~~~~~l~i~~~~~~~ 422 (516)
+..+.+.+|+.++|.|...+.. ...+.|++.. . ......+|..........|+|.++.. +
T Consensus 9 P~s~~~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~-~ 87 (113)
T d1n4xl_ 9 PLYLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEA-E 87 (113)
T ss_dssp CSEEEECTTCCEEEEEEESSCCCCTTSCCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEECSSEEEEEESSCCG-G
T ss_pred CCEEEECCCCCEEEEEEeccccccCCCceEeEEEecCCCCccEEEEEecCCCccccCCCeeeeccCCcccCccCCCCc-c
Confidence 4567889999999999975432 2358898631 1 11124567777777778999999999 9
Q ss_pred CceEEEEEEEcC
Q psy7039 423 DSGSYTIQLVNT 434 (516)
Q Consensus 423 ~~g~y~c~a~n~ 434 (516)
|++.|.|...+.
T Consensus 88 DsavYyCa~~~~ 99 (113)
T d1n4xl_ 88 DLGIYYCFQGSH 99 (113)
T ss_dssp GCEEEEEEECSS
T ss_pred cCEEEEEEECCC
Confidence 999999975543
|
| >d1u9ka_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: TREM-1 (triggering receptor expressed on myeloid cells 1) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.91 E-value=0.0017 Score=49.03 Aligned_cols=85 Identities=15% Similarity=0.135 Sum_probs=51.3
Q ss_pred cceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecC--cCceeeEEeeCCee-e--ccCCceEEeec--CC
Q psy7039 122 NDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLS--EPFLNHGWSINGQV-C--QIGGRADVQTT--KS 194 (516)
Q Consensus 122 ~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~p~~~i~W~~~~~~-~--~~~~~~~~~~~--~~ 194 (516)
+.+.+.+|++++|.|...+ .......+.|++.. .....+.+...+.. . ...+|+.+..+ ..
T Consensus 3 ~~~~~~eG~svtl~C~ys~------------~~~~~~~~~W~rq~pg~~~~~li~~~~~~~~~~~~~~gR~sis~d~~~~ 70 (110)
T d1u9ka_ 3 ERYDLVEGQTLTVKCPFNI------------MKYANSQKAWQRLPDGKEPLTLVVTQRPFTRPSEVHMGKFTLKHDPSEA 70 (110)
T ss_dssp EEEEECTTCCEEEEEECCH------------HHHTTSEEEEEECCTTSCCEEEEECCSSTTSCEEEEETTEEEEEEGGGT
T ss_pred CCCcCCCCCCEEEEEEECC------------CCccCCcEEEEEECCCCCEEEEEecCCCceeechhhCcEEEEEEECCCC
Confidence 3467899999999999871 12234456777742 11111222211110 0 11246666532 44
Q ss_pred eeEEEeccCCCCCCeeEEEEEEcC
Q psy7039 195 ETVLDIPFCSRSDTGHYSLTLENN 218 (516)
Q Consensus 195 ~~~l~i~~~~~~d~g~Y~c~~~~~ 218 (516)
...|.|.+++.+|+|.|.|.....
T Consensus 71 ~~~lti~~L~~eDsa~YyCa~~~~ 94 (110)
T d1u9ka_ 71 MLQVQMTDLQVTDSGLYRCVIYHP 94 (110)
T ss_dssp EEEEEECSCCGGGCEEEEEEEECT
T ss_pred EEEEEECccccCCCEEEEEEEeCC
Confidence 568999999999999999987543
|
| >d1fnha3 b.1.2.1 (A:183-271) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin, different Fn3 modules species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.91 E-value=0.0003 Score=51.18 Aligned_cols=41 Identities=29% Similarity=0.559 Sum_probs=34.5
Q ss_pred CCCCCCcccccccCCeEEEEeeCCCCCCCCCcceEEEEEEecCCCc
Q psy7039 451 SPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATGV 496 (516)
Q Consensus 451 ~~P~~~l~~~~~~~~~~~l~W~~p~~~~~~~i~~Y~v~~~~~~~~~ 496 (516)
++| .+|++..++.+++.|+|++|. +.+.+|.|+|+..+...
T Consensus 2 daP-~nl~v~~~~~~s~~l~W~~p~----~~i~~Y~i~~~~~~~~~ 42 (89)
T d1fnha3 2 DAP-SNLRFLATTPNSLLVSWQPPR----ARITGYIIKYEKPGSPP 42 (89)
T ss_dssp CCC-EEEEEEEEETTEEEEEEECCS----SCCSEEEEEEECTTSCC
T ss_pred ccC-cCCEEEEecCCEEEEEEeCCC----cCCceEEEEEeeccCCc
Confidence 356 789999999999999999874 46999999999876655
|
| >d1nkra2 b.1.1.4 (A:102-200) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Killer cell inhibitory receptor species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]
Probab=96.91 E-value=0.0013 Score=48.72 Aligned_cols=67 Identities=12% Similarity=0.112 Sum_probs=45.4
Q ss_pred eEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEeecCCeeEEEeccC
Q psy7039 124 VKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFC 203 (516)
Q Consensus 124 ~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~ 203 (516)
-.|..|+.++|.|... .+...+.|++++...... +......+....+.|..+
T Consensus 15 ~~V~~G~~VTL~C~~~---------------------------~~~~~f~L~k~g~~~~~~-~~~~~~~~~~~~f~~~~~ 66 (99)
T d1nkra2 15 PTVLAGENVTLSCSSR---------------------------SSYDMYHLSREGEAHERR-LPAGPKVNGTFQADFPLG 66 (99)
T ss_dssp SEECTTCEEEEEEEES---------------------------SCCSEEEEEETTCSSCEE-EECEEEETTEEEEEEEEE
T ss_pred CcccCCCeEEEEECCC---------------------------CCccEEEEEECCCccccE-EEccccCCccEEEEEecc
Confidence 4678999999999865 345677788876433211 111122344556788888
Q ss_pred CCCCCeeEEEEEEcC
Q psy7039 204 SRSDTGHYSLTLENN 218 (516)
Q Consensus 204 ~~~d~g~Y~c~~~~~ 218 (516)
...|+|.|+|.....
T Consensus 67 ~~~~~G~Y~C~y~~~ 81 (99)
T d1nkra2 67 PATHGGTYRCFGSFH 81 (99)
T ss_dssp ECCSCEEEEEEEEET
T ss_pred ccccCEEEEEEeecC
Confidence 899999999987643
|
| >d1ypzf1 b.1.1.1 (F:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), gamma-chain [TaxId: 9606]
Probab=96.90 E-value=0.002 Score=49.50 Aligned_cols=87 Identities=11% Similarity=0.092 Sum_probs=49.2
Q ss_pred CcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecC--cCceeeEEeeC-Cee-e--ccCCceEEee-
Q psy7039 119 STLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLS--EPFLNHGWSIN-GQV-C--QIGGRADVQT- 191 (516)
Q Consensus 119 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~p~~~i~W~~~-~~~-~--~~~~~~~~~~- 191 (516)
.++..+...+|++++|.|...+. .-....+.|++.. .....+.+... +.. . ....|+.+..
T Consensus 6 Q~~~sv~~~~G~svtL~C~~~~~------------~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~r~~~s~~ 73 (120)
T d1ypzf1 6 QPEISISRPRDETAQISCKVFIE------------SFRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKN 73 (120)
T ss_dssp CSCSEEEEETTSCEEEEEEECCG------------GGGGCCEEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEEC
T ss_pred cCCCEEEecCCCcEEEEEEEecc------------cccCCcccEEEeCCcccccccccccccccceeeeccccccccccc
Confidence 34456778899999999987610 0012234555542 11112222211 111 1 1124555443
Q ss_pred -cCCeeEEEeccCCCCCCeeEEEEEEc
Q psy7039 192 -TKSETVLDIPFCSRSDTGHYSLTLEN 217 (516)
Q Consensus 192 -~~~~~~l~i~~~~~~d~g~Y~c~~~~ 217 (516)
......|.|.+++.+|+|.|.|....
T Consensus 74 ~~~~~~~L~I~~l~~~Dsa~YyCA~~~ 100 (120)
T d1ypzf1 74 PSASTSILTIYSLEEEDEAIYYCSYGE 100 (120)
T ss_dssp CTTTEEEEEECSCCGGGCSEEEEEECC
T ss_pred cccccccccccccccccceeEEEEEcC
Confidence 33457899999999999999997653
|
| >d1bqua1 b.1.2.1 (A:5-99) Cytokine receptor gp130 cytokine-binding domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Cytokine receptor gp130 cytokine-binding domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.88 E-value=0.0011 Score=48.63 Aligned_cols=77 Identities=8% Similarity=0.004 Sum_probs=48.4
Q ss_pred ceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEE
Q psy7039 325 IDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKF 404 (516)
Q Consensus 325 ~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~ 404 (516)
+.+...+..++.|+|.+|.+ ++.+ ++|. + .+...+... .....
T Consensus 10 ~~~~~~~~~si~~~W~p~~~-~~~~-~~y~--------------------v------------~~~~~~~~~---~~~~~ 52 (95)
T d1bqua1 10 LSCIVNEGKKMRCEWDGGRE-THLE-TNFT--------------------L------------KSEWATHKF---ADCKA 52 (95)
T ss_dssp EEEEEETTSCCEEEEECCSC-CSSC-CEEE--------------------E------------EEEETTEEC---CCEEC
T ss_pred eEEEEccCCEEEEEEeCccc-CCCc-eEEE--------------------E------------EEEEcccce---eEeec
Confidence 78888899999999999865 3433 3331 1 111111110 00111
Q ss_pred EEcCCeEEEEEcCceecCCceEEEEEEEcCCCcee
Q psy7039 405 ETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDS 439 (516)
Q Consensus 405 ~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s 439 (516)
........+.+.+|.. ...|.|++.|.|..|.+.
T Consensus 53 ~~~~~~~~~~~~~L~~-~~~Y~f~V~A~N~~G~s~ 86 (95)
T d1bqua1 53 KRDTPTSCTVDYSTVY-FVNIEVWVEAENALGKVT 86 (95)
T ss_dssp CSSCTTEEECSSCCCT-TSCEEEEEEEEETTEEEE
T ss_pred ccccceeeeeeeecCC-CcEEEEEEEEEeCCcccc
Confidence 1122334567788999 999999999999999764
|
| >d1ugna2 b.1.1.4 (A:98-195) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Ligand binding domain of lir-1 (ilt2) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.88 E-value=0.0021 Score=47.40 Aligned_cols=69 Identities=10% Similarity=0.015 Sum_probs=42.0
Q ss_pred eEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCc--eEEeecCCeeEEEec
Q psy7039 124 VKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGR--ADVQTTKSETVLDIP 201 (516)
Q Consensus 124 ~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~--~~~~~~~~~~~l~i~ 201 (516)
-.|..|+.++|.|... .....+..++++........ ......+....+.|.
T Consensus 13 ~~v~~G~~VTL~C~~~---------------------------~~~~~f~L~k~g~~~~~~~~~~~~~~~~~~~a~F~l~ 65 (98)
T d1ugna2 13 PVVNSGGNVTLQCDSQ---------------------------VAFDGFILCKEGEDEHPQCLNSQPHARGSSRAIFSVG 65 (98)
T ss_dssp SEEETTCCEEEEEECS---------------------------SCCSEEEEEEC------CEEEC------CCEEEEEEC
T ss_pred CccCCCCcEEEEeCCC---------------------------CCCCEEEEEECCCcCCcEeeeeEEcCCCceEEEEEee
Confidence 3588999999999865 23445556665543221100 001112345689999
Q ss_pred cCCCCCCeeEEEEEEcCC
Q psy7039 202 FCSRSDTGHYSLTLENNL 219 (516)
Q Consensus 202 ~~~~~d~g~Y~c~~~~~~ 219 (516)
+++..|+|.|+|......
T Consensus 66 ~v~~~~~G~Y~C~y~~~~ 83 (98)
T d1ugna2 66 PVSPSRRWWYRCYAYDSN 83 (98)
T ss_dssp CCCTTSCEEEEEEEECTT
T ss_pred ecccCCCeEEEEeeEcCC
Confidence 999999999999886543
|
| >d1hxma1 b.1.1.1 (A:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), gamma-chain [TaxId: 9606]
Probab=96.87 E-value=0.002 Score=49.57 Aligned_cols=86 Identities=15% Similarity=0.127 Sum_probs=48.4
Q ss_pred cccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCc-CceeeEEeeCCe-eeccCCceEEee--cCCe
Q psy7039 120 TLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSE-PFLNHGWSINGQ-VCQIGGRADVQT--TKSE 195 (516)
Q Consensus 120 ~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~i~W~~~~~-~~~~~~~~~~~~--~~~~ 195 (516)
.+..+.+.+|++++|.|...+. .-.+..+.|++... ..+.+..+.... .-...+|+.... ....
T Consensus 7 ~~~sv~v~~G~~vtL~C~~s~~------------~~~~~~~~WyrQ~pg~~~~~l~~~~~~~~~~~~~r~~~s~~~~~~~ 74 (120)
T d1hxma1 7 EHQTVPVSIGVPATLRCSMKGE------------AIGNYYINWYRKTQGNTMTFIYREKDIYGPGFKDNFQGDIDIAKNL 74 (120)
T ss_dssp SCSEEEEETTCCEEEEEEECSS------------CGGGSEEEEEEEESSSCSEEEEETTTEECTTTTTTEEEEEEGGGTE
T ss_pred cCCCEEECCCCCEEEEEEEecc------------CccCCcCeEEEccccccceeeeccccceeecccccceeeccccccc
Confidence 4456789999999999988710 00111234443210 111111111111 101124555443 3445
Q ss_pred eEEEeccCCCCCCeeEEEEEEc
Q psy7039 196 TVLDIPFCSRSDTGHYSLTLEN 217 (516)
Q Consensus 196 ~~l~i~~~~~~d~g~Y~c~~~~ 217 (516)
..|.|.+++.+|+|.|.|....
T Consensus 75 ~~L~i~~~~~~Dsa~YyCA~~~ 96 (120)
T d1hxma1 75 AVLKILAPSERDEGSYYCACDT 96 (120)
T ss_dssp EEEEESSCCGGGCEEEEEEEEC
T ss_pred eecccccccccCCceeecCccc
Confidence 7999999999999999998654
|
| >d1fnha2 b.1.2.1 (A:93-182) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin, different Fn3 modules species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.86 E-value=0.0029 Score=45.71 Aligned_cols=74 Identities=15% Similarity=0.159 Sum_probs=51.6
Q ss_pred ceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEE
Q psy7039 325 IDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKF 404 (516)
Q Consensus 325 ~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~ 404 (516)
+.+..++.+++.|+|.+|.. .+.+| .+.|...+. ......
T Consensus 8 l~v~~~~~~si~v~W~~p~~----~~~~Y--------------------------------~i~~~~~~~----~~~~~~ 47 (90)
T d1fnha2 8 ARVTDATETTITISWRTKTE----TITGF--------------------------------QVDAVPANG----QTPIQR 47 (90)
T ss_dssp EEEEEECSSEEEEEEECCSS----CCCCE--------------------------------EEEEEESSS----SCCEEE
T ss_pred CEEEEecCCEEEEEEECCCC----CCcee--------------------------------EEEEEEccC----CceEEE
Confidence 88899999999999998753 34444 123332221 122233
Q ss_pred EEcCCeEEEEEcCceecCCceEEEEEEEcCCCcee
Q psy7039 405 ETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDS 439 (516)
Q Consensus 405 ~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s 439 (516)
........+.|.+|.+ +..|.|++.|.|..|.+.
T Consensus 48 ~~~~~~~~~~i~~L~p-~t~Y~~~V~a~~~~g~s~ 81 (90)
T d1fnha2 48 TIKPDVRSYTITGLQP-GTDYKIYLYTLNDNARSS 81 (90)
T ss_dssp ECCTTCSEEEEESCCT-TCEEEEEEEEEETTEECC
T ss_pred ecCCCccEEEeCCCCC-CcEEEEEEEEEeCCCCcC
Confidence 3344556799999999 999999999999988754
|
| >d2dtge1 b.1.2.1 (E:808-909) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Insulin receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.86 E-value=9.6e-05 Score=55.61 Aligned_cols=47 Identities=17% Similarity=0.225 Sum_probs=38.8
Q ss_pred cCCCCCCCCcccccccCCeEEEEeeCCCCCCCCCcceEEEEEEecCCCc
Q psy7039 448 DKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATGV 496 (516)
Q Consensus 448 ~~p~~P~~~l~~~~~~~~~~~l~W~~p~~~~~~~i~~Y~v~~~~~~~~~ 496 (516)
.+++.| .++++..++.+++.|+|++|.. .++.|.+|.|+|+..+...
T Consensus 3 ~~~d~P-~~v~~~~~~~~sv~l~W~pP~~-~ng~i~~Y~v~y~~~~~~~ 49 (102)
T d2dtge1 3 KADDIV-GPVTHEIFENNVVHLMWQEPKE-PNGLIVLYEVSYRRYGDEE 49 (102)
T ss_dssp CCCCCC-CCCCCCSSSSSCCCCCCCCCCS-CSSCEEEECCCCBSSSBCC
T ss_pred CCCCCC-CCCEEEEECCCEEEEEEEeCCC-CcceEEEeeeEEEecCCCC
Confidence 356777 8899999999999999998874 4677999999999776544
|
| >d1h5ba_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]
Probab=96.85 E-value=0.0019 Score=49.19 Aligned_cols=73 Identities=16% Similarity=0.312 Sum_probs=48.2
Q ss_pred cccEEEEcCCeEEEEEEEeeecCCceEEEECC--eec------C----CCCceEE---EEcCCeEEEEEcCceecCCceE
Q psy7039 362 IRDMTVLAGEEFTITVPFSGRPKPTPIWTVNG--DEV------S----PDGRIKF---ETSENQTIYRNKSAKRATDSGS 426 (516)
Q Consensus 362 ~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~--~~l------~----~~~~~~~---~~~~~~~~l~i~~~~~~~~~g~ 426 (516)
+..+.+.+|+.++|.|..... ...+.|++.. ..+ . ....... ........|.|.++.+ +|+|.
T Consensus 8 P~~~~v~~G~~vtl~C~~~~~-~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~-~Dsa~ 85 (113)
T d1h5ba_ 8 PSALSLHEGTDSALRCNFTTT-MRSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSERARYSTLHIRDAQL-EDSGT 85 (113)
T ss_dssp CSEEEEETTCCEEEEEEESSC-CSEEEEEEECTTSCEEEEEEESSSEEEETTEEEECCSSSSSEEEEEECSCCG-GGCEE
T ss_pred CCEEEEcCCCCEEEEEEEecC-CccceEEEeecccceEEEEEeeeeeccccccceEEeecCCceeEEEECCCCH-hHCEE
Confidence 466788999999999998653 3468998732 110 0 0011110 1122446799999999 99999
Q ss_pred EEEEEEcCCC
Q psy7039 427 YTIQLVNTVG 436 (516)
Q Consensus 427 y~c~a~n~~G 436 (516)
|.|.+....+
T Consensus 86 YyCa~~~~~~ 95 (113)
T d1h5ba_ 86 YFCAAEASSG 95 (113)
T ss_dssp EEEEEECSSS
T ss_pred EEEEecCCCC
Confidence 9999876544
|
| >d1kgce1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=96.84 E-value=0.0034 Score=47.56 Aligned_cols=84 Identities=13% Similarity=0.046 Sum_probs=49.2
Q ss_pred CcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCc-Cce-eeEEeeCCeeecc----CCceEEee-
Q psy7039 119 STLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSE-PFL-NHGWSINGQVCQI----GGRADVQT- 191 (516)
Q Consensus 119 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~-~i~W~~~~~~~~~----~~~~~~~~- 191 (516)
..|..+.+.+|++++|.|.... .+..+-|++... ..+ .+.....+..... ..++....
T Consensus 4 Q~P~~~~~~~G~svtl~C~~~~---------------~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 68 (112)
T d1kgce1 4 QSPRYKVAKRGQDVALRCDPIS---------------GHVSLFWYQQALGQGPEFLTYFQNEAQLDKSGLPSDRFFAERP 68 (112)
T ss_dssp EECSEEEEETTCCEEEEEECCT---------------TCCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEECT
T ss_pred ECCCeEEECCCCCEEEEEEECC---------------CCCEEEeeeeecccceEEeeeeccCcccccCCCCCCceeeECC
Confidence 3456678899999999998651 122345555321 111 1222222222111 23443332
Q ss_pred cCCeeEEEeccCCCCCCeeEEEEEEc
Q psy7039 192 TKSETVLDIPFCSRSDTGHYSLTLEN 217 (516)
Q Consensus 192 ~~~~~~l~i~~~~~~d~g~Y~c~~~~ 217 (516)
......|.|.+++++|+|.|.|.+..
T Consensus 69 ~~~~~~L~I~~~~~~Dsa~YyCa~~~ 94 (112)
T d1kgce1 69 EGSVSTLKIQRTQQEDSAVYLCASSL 94 (112)
T ss_dssp TSSCEEEEESSCCGGGCEEEEEEEES
T ss_pred cCCEEEEEECCCCcCCCEEEEEeeeC
Confidence 33457899999999999999998753
|
| >d1smoa_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: TREM-1 (triggering receptor expressed on myeloid cells 1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.83 E-value=0.0014 Score=49.95 Aligned_cols=71 Identities=17% Similarity=0.296 Sum_probs=48.3
Q ss_pred ccEEEEcCCeEEEEEEEeee--cCCceEEEECCe--e---c---C---------CCCceEEEE--cCCeEEEEEcCceec
Q psy7039 363 RDMTVLAGEEFTITVPFSGR--PKPTPIWTVNGD--E---V---S---------PDGRIKFET--SENQTIYRNKSAKRA 421 (516)
Q Consensus 363 ~~~~v~~g~~~~l~C~~~g~--p~~~i~W~~~~~--~---l---~---------~~~~~~~~~--~~~~~~l~i~~~~~~ 421 (516)
....+.+|++++|.|.+.+. ....+.|++... . + . ..+++.+.. ..+...|+|.++..
T Consensus 7 ~~~~v~eG~svtl~C~~~~~~~~~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~Lti~~l~~- 85 (113)
T d1smoa_ 7 EKYELKEGQTLDVKCDYTLEKFASSQKAWQIIRDGEMPKTLACTERPSKNSHPVQVGRIILEDYHDHGLLRVRMVNLQV- 85 (113)
T ss_dssp EEEECCTTCCEEEEEECCHHHHTTSCEEEEEECTTSCCEEEEECCSSCCSSCCEEETTEEEEEETTTTEEEEEECSCCG-
T ss_pred CcEEEccCCCEEEEEEeCCCCCCCCEEEEEECCCCCCCEEEEecCCCCceEcceECCeEEEEEECCCCEEEEEEccCCc-
Confidence 34667799999999998643 334688987321 1 0 0 013555543 34456799999999
Q ss_pred CCceEEEEEEEcC
Q psy7039 422 TDSGSYTIQLVNT 434 (516)
Q Consensus 422 ~~~g~y~c~a~n~ 434 (516)
+|+|.|.|.+...
T Consensus 86 ~Dsg~Y~Cav~~~ 98 (113)
T d1smoa_ 86 EDSGLYQCVIYQP 98 (113)
T ss_dssp GGCEEEEEEECCT
T ss_pred ccCceEEEEEECC
Confidence 9999999987544
|
| >d2bnub1 b.1.1.1 (B:2-113) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=96.83 E-value=0.0016 Score=49.54 Aligned_cols=83 Identities=18% Similarity=0.093 Sum_probs=47.2
Q ss_pred cccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCc-CceeeEEee--CCeeecc--CCceEE-eecC
Q psy7039 120 TLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSE-PFLNHGWSI--NGQVCQI--GGRADV-QTTK 193 (516)
Q Consensus 120 ~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~i~W~~--~~~~~~~--~~~~~~-~~~~ 193 (516)
.|..+.+.+|++++|.|.... .+..+.|++... ..+.+..+. ....... ..++.. ....
T Consensus 5 ~P~~~~~~~G~svtl~C~~s~---------------~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (112)
T d2bnub1 5 TPKFQVLKTGQSMTLQCAQDM---------------NHEYMSWYRQDPGMGLRLIHYSVGAGITDQGEVPNGYNVSRSTT 69 (112)
T ss_dssp ECSEEEEETTCCEEEEEEESS---------------CCSEEEEEEEETTTEEEEEEEEEETTEEEECSSCTTCEECCSSS
T ss_pred CCCeEEECCCCCEEEEEEEEC---------------CccceEecccccccCccceeeEeccCceecCccccceeEecCCC
Confidence 355677899999999998761 123355555321 122222111 1111111 122222 2233
Q ss_pred CeeEEEeccCCCCCCeeEEEEEEc
Q psy7039 194 SETVLDIPFCSRSDTGHYSLTLEN 217 (516)
Q Consensus 194 ~~~~l~i~~~~~~d~g~Y~c~~~~ 217 (516)
....|.|.++.++|+|.|.|....
T Consensus 70 ~~~~L~I~~~~~~DsavYyCA~~~ 93 (112)
T d2bnub1 70 EDFPLRLLSAAPSQTSVYFCASSY 93 (112)
T ss_dssp SBCCEEESSCCGGGCEEEEEEEEC
T ss_pred CEEEEEECCCCHHHCEEEEEeecC
Confidence 456899999999999999998753
|
| >d1owwa_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin, different Fn3 modules species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.83 E-value=0.0074 Score=43.80 Aligned_cols=72 Identities=14% Similarity=0.177 Sum_probs=50.7
Q ss_pred cCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEEEEcCCe
Q psy7039 331 TPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQ 410 (516)
Q Consensus 331 ~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~ 410 (516)
..+++.|+|++|. +..|.+|. +.|...+.. .....+...+..
T Consensus 14 ~~~s~~vsW~~P~---~~~i~~Y~--------------------------------i~y~~~~~~---~~~~~~~v~~~~ 55 (93)
T d1owwa_ 14 QPNSHPIQWNAPQ---PSHISKYI--------------------------------LRWRPKNSV---GRWKEATIPGHL 55 (93)
T ss_dssp CTTCEEEEEECCS---SSCEEEEE--------------------------------EEEEETTCS---SCCEEEEECSSC
T ss_pred CCCEEEEEeeccc---ccceeEEE--------------------------------EEEeecccc---ceeeeeccCCCc
Confidence 4589999999985 34577772 455443211 111233445566
Q ss_pred EEEEEcCceecCCceEEEEEEEcCCCceeEE
Q psy7039 411 TIYRNKSAKRATDSGSYTIQLVNTVGSDSAS 441 (516)
Q Consensus 411 ~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s 441 (516)
..++|.+|.+ +..|.+++.|.|..|.+..+
T Consensus 56 ~~~~l~gL~P-~t~Y~v~v~av~~~G~s~~~ 85 (93)
T d1owwa_ 56 NSYTIKGLKP-GVVYEGQLISIQQYGHQEVT 85 (93)
T ss_dssp CEEEECSCCS-SEEEEEEEEEEESSSCEEEE
T ss_pred cEEEECCccc-CcEEEEEEEEEeCCCccCcE
Confidence 7899999999 99999999999999986655
|
| >d2aq2a1 b.1.1.1 (A:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), beta-chain [TaxId: 10090]
Probab=96.81 E-value=0.0029 Score=47.75 Aligned_cols=70 Identities=20% Similarity=0.245 Sum_probs=48.7
Q ss_pred cccEEEEcCCeEEEEEEEeeecCCceEEEEC--Cee----c------------CCCCceEEEEcCCeEEEEEcCceecCC
Q psy7039 362 IRDMTVLAGEEFTITVPFSGRPKPTPIWTVN--GDE----V------------SPDGRIKFETSENQTIYRNKSAKRATD 423 (516)
Q Consensus 362 ~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~--~~~----l------------~~~~~~~~~~~~~~~~l~i~~~~~~~~ 423 (516)
+....+.+|+.++|.|...+. ...+.|++. |.. + ..+.............|+|.++.+ +|
T Consensus 8 P~~~~~~~G~~vtl~C~~s~~-~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~-~D 85 (110)
T d2aq2a1 8 PRNKVAVTGEKVTLSCQQTNN-HNNMYWYRQDTGHGLRLIHYSYGVGNTEKGDIPDGYEASRPSQEQFSLILESATP-SQ 85 (110)
T ss_dssp CSEEEECTTCCEEEEEEESSC-CSEEEEEEECTTSCEEEEEEESSTTCCEECSCCTTCEEEEEETTEEEEEESSCCG-GG
T ss_pred CCeEEEcCCCCEEEEEEECCC-cCcEEEEEEcccCCceEEEEEeecCCcccCCCCCCEEEEeccCCEEEEEECCCCH-hh
Confidence 456778999999999987543 346899873 110 0 011223333445667899999999 99
Q ss_pred ceEEEEEEEc
Q psy7039 424 SGSYTIQLVN 433 (516)
Q Consensus 424 ~g~y~c~a~n 433 (516)
+|.|.|.+..
T Consensus 86 sa~YyCa~~~ 95 (110)
T d2aq2a1 86 TSVYFCASGG 95 (110)
T ss_dssp CEEEEEEEEE
T ss_pred CEEEEEeeCC
Confidence 9999998764
|
| >d1cd0a_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain lambda variable domain, VL-lambda species: Human (Homo sapiens), cluster 1 [TaxId: 9606]
Probab=96.79 E-value=0.0016 Score=49.43 Aligned_cols=72 Identities=17% Similarity=0.137 Sum_probs=50.1
Q ss_pred cccEEEEcCCeEEEEEEEeeec--CCceEEEECC--eec------------CCCCceEEEE--cCCeEEEEEcCceecCC
Q psy7039 362 IRDMTVLAGEEFTITVPFSGRP--KPTPIWTVNG--DEV------------SPDGRIKFET--SENQTIYRNKSAKRATD 423 (516)
Q Consensus 362 ~~~~~v~~g~~~~l~C~~~g~p--~~~i~W~~~~--~~l------------~~~~~~~~~~--~~~~~~l~i~~~~~~~~ 423 (516)
+..+.+.+|+.++|.|...+.. ..-+.|++.. ..+ ...+++.... ..+...|.|.++.+ +|
T Consensus 7 P~s~sv~~G~svtL~C~~s~~~~~~~~i~WyrQ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~l~~-~D 85 (111)
T d1cd0a_ 7 PHSVSESPGKTVTISCTRSSGNIDSNYVQWYQQRPGSAPITVIYEDNQRPSGVPDRFAGSIDRSSNSASLTISGLKT-ED 85 (111)
T ss_dssp CSEEEECTTSCEEEEEEESSSCGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTTTEEEEEECSCCG-GG
T ss_pred CCeeEECCCCCEEEEEEECCCCccCceEEEeeeccCceeEeeeccccccCcccCCceeEeecCCCCccccccccCCc-cc
Confidence 3457899999999999986543 2348898731 110 1123454443 45567899999999 99
Q ss_pred ceEEEEEEEcC
Q psy7039 424 SGSYTIQLVNT 434 (516)
Q Consensus 424 ~g~y~c~a~n~ 434 (516)
++.|.|.+.+.
T Consensus 86 sa~YyCA~~~~ 96 (111)
T d1cd0a_ 86 EADYYCQSYDA 96 (111)
T ss_dssp CEEEEEEEEET
T ss_pred CcEEEEeeccC
Confidence 99999987654
|
| >d2esve1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=96.78 E-value=0.0043 Score=46.89 Aligned_cols=84 Identities=11% Similarity=0.090 Sum_probs=49.9
Q ss_pred CcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecC--cCceeeEEeeCCeeecc----CCceEEee-
Q psy7039 119 STLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLS--EPFLNHGWSINGQVCQI----GGRADVQT- 191 (516)
Q Consensus 119 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~p~~~i~W~~~~~~~~~----~~~~~~~~- 191 (516)
..|..+.+.+|++++|.|.... ....+-|++.. .....|.....+..... ..++....
T Consensus 4 Q~P~~~~~~~G~svtl~C~~~~---------------~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~ 68 (111)
T d2esve1 4 QFPSHSVIEKGQTVTLRCDPIS---------------GHDNLYWYRRVMGKEIKFLLHFVKESKQDESGMPNNRFLAERT 68 (111)
T ss_dssp EECSEEEEETTCCEEEEEECCT---------------TCSEEEEEEEETTSCEEEEEEEETTEEEECTTCCSTTEEEECT
T ss_pred ECCCEEEECCCCCEEEEEEECC---------------CCceEEEEEEccCCcceecceecccCcccccCCCCccEEEEcC
Confidence 3456688999999999998651 11234555542 11122222233222211 23444433
Q ss_pred cCCeeEEEeccCCCCCCeeEEEEEEc
Q psy7039 192 TKSETVLDIPFCSRSDTGHYSLTLEN 217 (516)
Q Consensus 192 ~~~~~~l~i~~~~~~d~g~Y~c~~~~ 217 (516)
.+....|.|.+++.+|+|.|.|.+..
T Consensus 69 ~~~~~~L~i~~~~~~Dsa~YyCa~~~ 94 (111)
T d2esve1 69 GGTYSTLKVQPAELEDSGVYFCASSQ 94 (111)
T ss_dssp TSSSEEEEESSCCGGGCEEEEEEEES
T ss_pred CCCEEEEEECCcccCCCceEEEeeeC
Confidence 23346899999999999999998653
|
| >d1cd9b1 b.1.2.1 (B:1-107) Granulocyte colony-stimulating factor (GC-SF) receptor {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Granulocyte colony-stimulating factor (GC-SF) receptor species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.77 E-value=0.0046 Score=46.23 Aligned_cols=30 Identities=20% Similarity=0.082 Sum_probs=26.5
Q ss_pred CeEEEEEcCceecCCceEEEEEEEcCCCcee
Q psy7039 409 NQTIYRNKSAKRATDSGSYTIQLVNTVGSDS 439 (516)
Q Consensus 409 ~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s 439 (516)
...++.+.+|.+ ...|.|++.|.|..|.+.
T Consensus 66 ~~~~~~~~~L~~-~t~Y~frV~A~N~~G~s~ 95 (107)
T d1cd9b1 66 NNCSIPRKNLLL-YQYMAIWVQAENMLGSSE 95 (107)
T ss_dssp CEEEEEGGGCCT-TSCEEEEEEEEETTEEEE
T ss_pred cccEEEcCCCCc-CceEEEEEEEEeCCcccc
Confidence 446788999999 999999999999999763
|
| >d1n26a3 b.1.2.1 (A:196-299) Interleukin-6 receptor alpha chain, domains 2 and 3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Interleukin-6 receptor alpha chain, domains 2 and 3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.76 E-value=0.003 Score=47.08 Aligned_cols=31 Identities=10% Similarity=-0.049 Sum_probs=26.1
Q ss_pred CCeEEEEEcCceecCCceEEEEEEEcCCCcee
Q psy7039 408 ENQTIYRNKSAKRATDSGSYTIQLVNTVGSDS 439 (516)
Q Consensus 408 ~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s 439 (516)
.....+.|.+|.+ ...|.|+++|.|..|.+.
T Consensus 58 ~~~~~~~i~~L~p-~t~Y~~rVra~n~~g~g~ 88 (104)
T d1n26a3 58 DLQHHCVIHDAWS-GLRHVVQLRAQEEFGQGE 88 (104)
T ss_dssp GGCSEEEESSCCT-TCCEEEEEEEEETTTBSC
T ss_pred cceEEEEECCCCC-CCEEEEEEEEEeCCCccC
Confidence 3445789999999 999999999999988753
|
| >d1nfdb1 b.1.1.1 (B:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), beta-chain [TaxId: 10090]
Probab=96.75 E-value=0.0025 Score=48.44 Aligned_cols=84 Identities=11% Similarity=0.057 Sum_probs=49.5
Q ss_pred CcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCc-CceeeE-EeeCCeeec---cCCceEEe-ec
Q psy7039 119 STLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSE-PFLNHG-WSINGQVCQ---IGGRADVQ-TT 192 (516)
Q Consensus 119 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~i~-W~~~~~~~~---~~~~~~~~-~~ 192 (516)
..|..+.+.+|+.++|.|.... ....+-|++... ..+.+. ......... ...++... ..
T Consensus 6 Q~P~~~~~~~G~~v~l~C~~~~---------------~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 70 (113)
T d1nfdb1 6 QSPRHIIKEKGGRSVLTCIPIS---------------GHSNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQFD 70 (113)
T ss_dssp EECSEEEEETTCCCEEEEECCT---------------TCCEEEEEEBCSSCCCEEEEEEETTTEEEESSCCTTCCCEECT
T ss_pred EcCCEEEEeCCCCEEEEEEeCC---------------CCCEEEEEEECCcCCCcceeeeeecccccCCCcccceeeEcCC
Confidence 4466788999999999998650 122355655421 111111 111111111 12344333 33
Q ss_pred CCeeEEEeccCCCCCCeeEEEEEEc
Q psy7039 193 KSETVLDIPFCSRSDTGHYSLTLEN 217 (516)
Q Consensus 193 ~~~~~l~i~~~~~~d~g~Y~c~~~~ 217 (516)
.....|.|.+++.+|+|.|.|.+..
T Consensus 71 ~~~~~L~I~~~~~~Dsa~YyCa~~~ 95 (113)
T d1nfdb1 71 DYHSEMNMSALELEDSAMYFCASSL 95 (113)
T ss_dssp TSCEEEECCSCCGGGCEEECEEEES
T ss_pred CCeEEEEecccCcCCceeEEEEeec
Confidence 4456899999999999999998754
|
| >d1kgce1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=96.75 E-value=0.0045 Score=46.87 Aligned_cols=70 Identities=13% Similarity=0.166 Sum_probs=47.2
Q ss_pred cccEEEEcCCeEEEEEEEeeecCCceEEEECC--ee------------c----CCCCceEEEE-cCCeEEEEEcCceecC
Q psy7039 362 IRDMTVLAGEEFTITVPFSGRPKPTPIWTVNG--DE------------V----SPDGRIKFET-SENQTIYRNKSAKRAT 422 (516)
Q Consensus 362 ~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~--~~------------l----~~~~~~~~~~-~~~~~~l~i~~~~~~~ 422 (516)
+..+.+.+|+.++|.|.... ....+.|++.. .. . ....++.... ......|+|.++.+ +
T Consensus 6 P~~~~~~~G~svtl~C~~~~-~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~-~ 83 (112)
T d1kgce1 6 PRYKVAKRGQDVALRCDPIS-GHVSLFWYQQALGQGPEFLTYFQNEAQLDKSGLPSDRFFAERPEGSVSTLKIQRTQQ-E 83 (112)
T ss_dssp CSEEEEETTCCEEEEEECCT-TCCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEECTTSSCEEEEESSCCG-G
T ss_pred CCeEEECCCCCEEEEEEECC-CCCEEEeeeeecccceEEeeeeccCcccccCCCCCCceeeECCcCCEEEEEECCCCc-C
Confidence 45567899999999998643 33468898721 10 0 1123343332 23446899999999 9
Q ss_pred CceEEEEEEEc
Q psy7039 423 DSGSYTIQLVN 433 (516)
Q Consensus 423 ~~g~y~c~a~n 433 (516)
|++.|.|.+.-
T Consensus 84 Dsa~YyCa~~~ 94 (112)
T d1kgce1 84 DSAVYLCASSL 94 (112)
T ss_dssp GCEEEEEEEES
T ss_pred CCEEEEEeeeC
Confidence 99999998864
|
| >d1fnaa_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin, different Fn3 modules species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.74 E-value=0.0033 Score=45.47 Aligned_cols=74 Identities=16% Similarity=0.228 Sum_probs=51.2
Q ss_pred ceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEE
Q psy7039 325 IDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKF 404 (516)
Q Consensus 325 ~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~ 404 (516)
|.+..++.+++.|+|.+|.. .+.+|. +.|...+.. ......
T Consensus 3 l~v~~~t~~sv~l~W~~p~~----~~~~Y~--------------------------------v~~~~~~~~---~~~~~~ 43 (91)
T d1fnaa_ 3 LEVVAATPTSLLISWDAPAV----TVRYYR--------------------------------ITYGETGGN---SPVQEF 43 (91)
T ss_dssp CEEEEECSSCEEEECCCCSS----CCSEEE--------------------------------EEEEETTCC---SCCEEE
T ss_pred CEEEEeCCCEEEEEEEccce----EecEEE--------------------------------EEEEcCCCC---ceeEEE
Confidence 78889999999999998853 244441 233222211 112223
Q ss_pred EEcCCeEEEEEcCceecCCceEEEEEEEcCCCce
Q psy7039 405 ETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSD 438 (516)
Q Consensus 405 ~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~ 438 (516)
....+..++.|.+|.+ +..|.+++.|.|..|.+
T Consensus 44 ~~~~~~t~~~l~~L~p-~t~Y~~~V~a~~~~g~s 76 (91)
T d1fnaa_ 44 TVPGSKSTATISGLKP-GVDYTITVYAVTGRGDS 76 (91)
T ss_dssp EEETTCCEEEECSCCT-TCEEEEEEEEECTTCCS
T ss_pred EeCCCccEEEeCCCCC-CCEEEEEEEEEeCCccC
Confidence 3445556899999999 99999999999999864
|
| >d2cuma1 b.1.2.1 (A:7-99) Tenascin-X {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Tenascin-X species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.73 E-value=0.00062 Score=49.84 Aligned_cols=42 Identities=19% Similarity=0.442 Sum_probs=34.5
Q ss_pred CCCCCCcccccccCCeEEEEeeCCCCCCCCCcceEEEEEEecCCCce
Q psy7039 451 SPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATGVS 497 (516)
Q Consensus 451 ~~P~~~l~~~~~~~~~~~l~W~~p~~~~~~~i~~Y~v~~~~~~~~~~ 497 (516)
++| .++.+..++.+++.|+|++|. +.+.+|.|.|+..+....
T Consensus 3 ~~P-~~l~~~~~~~~sv~l~W~~p~----~~~~~Y~v~~~~~~~~~~ 44 (93)
T d2cuma1 3 EAP-RDLEAKEVTPRTALLTWTEPP----VRPAGYLLSFHTPGGQTQ 44 (93)
T ss_dssp CCC-EEEEEESCCSSCEEEEEECCS----SCCSEEEEEEECTTSCEE
T ss_pred CcC-CCCEEEEeCCCEEEEEEEccc----cccccEEEEEEccccccE
Confidence 456 789999999999999999874 458999999998765443
|
| >d1nkra2 b.1.1.4 (A:102-200) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Killer cell inhibitory receptor species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]
Probab=96.71 E-value=0.0045 Score=45.63 Aligned_cols=70 Identities=16% Similarity=0.020 Sum_probs=46.5
Q ss_pred cccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcC
Q psy7039 362 IRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNT 434 (516)
Q Consensus 362 ~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~ 434 (516)
.....+..|++++|.|.... ....+.|+|+|...... ............+.|..+.. .|+|.|+|.-...
T Consensus 12 ~P~~~V~~G~~VTL~C~~~~-~~~~f~L~k~g~~~~~~-~~~~~~~~~~~~f~~~~~~~-~~~G~Y~C~y~~~ 81 (99)
T d1nkra2 12 QPGPTVLAGENVTLSCSSRS-SYDMYHLSREGEAHERR-LPAGPKVNGTFQADFPLGPA-THGGTYRCFGSFH 81 (99)
T ss_dssp ESCSEECTTCEEEEEEEESS-CCSEEEEEETTCSSCEE-EECEEEETTEEEEEEEEEEC-CSCEEEEEEEEET
T ss_pred eCCCcccCCCeEEEEECCCC-CccEEEEEECCCccccE-EEccccCCccEEEEEecccc-ccCEEEEEEeecC
Confidence 34557899999999997643 34478889888532211 11112233445678888888 9999999976544
|
| >d1tdqa2 b.1.2.1 (A:94-185) Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Tenascin species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.71 E-value=0.0016 Score=47.29 Aligned_cols=41 Identities=24% Similarity=0.267 Sum_probs=34.4
Q ss_pred CCCCCCcccccccCCeEEEEeeCCCCCCCCCcceEEEEEEecCCCc
Q psy7039 451 SPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATGV 496 (516)
Q Consensus 451 ~~P~~~l~~~~~~~~~~~l~W~~p~~~~~~~i~~Y~v~~~~~~~~~ 496 (516)
++| .+|++..++.+++.|+|++|. +.+.+|.|+|+......
T Consensus 2 daP-~~l~v~~~~~~sv~v~W~~p~----~~~~~y~v~y~~~~~~~ 42 (92)
T d1tdqa2 2 DAP-KNLRVGSRTATSLDLEWDNSE----AEAQEYKVVYSTLAGEQ 42 (92)
T ss_dssp CCC-EEEEEEEECSSCEEEEEECCS----SCCSEEEEEEEETTCCC
T ss_pred ccC-cCCEEEEecCCEEEEEEEecC----CcccceEEEEEEcCCCc
Confidence 356 789999999999999999874 46899999999877655
|
| >d1f6fb2 b.1.2.1 (B:101-203) Prolactin receptor {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Prolactin receptor species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.71 E-value=0.0011 Score=49.42 Aligned_cols=48 Identities=19% Similarity=0.294 Sum_probs=34.8
Q ss_pred CCCCCCCCcccc----cccCCeEEEEeeCCCC---CCCCCcceEEEEEEecCCCce
Q psy7039 449 KPSPPQGPLDVS----DITPESCSLSWKPPLD---DGGSPITNYVVEKYESATGVS 497 (516)
Q Consensus 449 ~p~~P~~~l~~~----~~~~~~~~l~W~~p~~---~~~~~i~~Y~v~~~~~~~~~~ 497 (516)
+|+|| .+|.+. ..+..++.|+|++|.. +.+..+..|.|+|++.+...+
T Consensus 2 kP~pP-~nl~~~~~~~~~~~~~v~vsW~pP~~~~~~~~~~~l~Y~v~~~~~~~~~~ 56 (103)
T d1f6fb2 2 EPEPP-RNLTLEVKQLKDKKTYLWVKWSPPTITDVKTGWFTMEYEIRLKPEEAEEW 56 (103)
T ss_dssp CCCCC-EEEEEEEC----CCCCEEEEEECCTTSCTTTTSSCEEEEEEEEESSCSCC
T ss_pred CCCCC-CCCEEEEEecccCCCEEEEEECCCCcccCCCCcEEEEEEEEEEeCCCcce
Confidence 57888 666653 3456789999999853 345567899999999887663
|
| >d2atpb1 b.1.1.1 (B:1-115) CD8 {Mouse (Mus musculus), beta-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD8 species: Mouse (Mus musculus), beta-chain [TaxId: 10090]
Probab=96.70 E-value=0.002 Score=49.17 Aligned_cols=71 Identities=13% Similarity=0.088 Sum_probs=48.5
Q ss_pred cccEEEEcCCeEEEEEEEeee-cCCceEEEECC-----eec------C-----------CCCceEEEE--cCCeEEEEEc
Q psy7039 362 IRDMTVLAGEEFTITVPFSGR-PKPTPIWTVNG-----DEV------S-----------PDGRIKFET--SENQTIYRNK 416 (516)
Q Consensus 362 ~~~~~v~~g~~~~l~C~~~g~-p~~~i~W~~~~-----~~l------~-----------~~~~~~~~~--~~~~~~l~i~ 416 (516)
+..+.+.+|+.+.|.|.+.+. ....+.|++.. ..+ . ...++.... ......|+|.
T Consensus 5 P~~~~v~~G~sv~l~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~ 84 (115)
T d2atpb1 5 PSSLLVQTNHTAKMSCEVKSISKLTSIYWLRERQDPKDKYFEFLASWSSSKGVLYGESVDKKRNIILESSDSRRPFLSIM 84 (115)
T ss_dssp CSEEEECTTSCEEEEEECCSSCCSSEEEEEEEEECSSCEEEEEEEEEETTTEEEECGGGTTTCCEEEESTTSSSCEEEEC
T ss_pred CCcEEEcCCCCEEEEEEEeCCCCCCceEEEEeecCCCCeEEEEeeEEecccCcEecCCcCCCCEEEEEeCCCCeEEEeec
Confidence 456788999999999998763 34468998631 111 0 122333332 2334579999
Q ss_pred CceecCCceEEEEEEEc
Q psy7039 417 SAKRATDSGSYTIQLVN 433 (516)
Q Consensus 417 ~~~~~~~~g~y~c~a~n 433 (516)
++.. +|+|.|.|.+..
T Consensus 85 ~~~~-~Dsg~Y~Ca~~~ 100 (115)
T d2atpb1 85 NVKP-EDSDFYFCATVG 100 (115)
T ss_dssp SCCG-GGCEEEEEEEEC
T ss_pred ccCC-CCCcEEEEeEcC
Confidence 9999 999999998753
|
| >d1fnfa1 b.1.2.1 (A:1142-1235) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin, different Fn3 modules species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.68 E-value=0.0051 Score=44.82 Aligned_cols=76 Identities=11% Similarity=0.082 Sum_probs=50.0
Q ss_pred ceeeeccC-CeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceE
Q psy7039 325 IDYTTVTP-ESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIK 403 (516)
Q Consensus 325 ~~~~~~~~-~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~ 403 (516)
+++..... +.+.|+|.+|... .|.+|. |.|...+.. ......
T Consensus 8 l~v~~~~~ts~i~v~W~~p~~~---~i~~Y~--------------------------------v~y~~~~~~--~~~~~~ 50 (94)
T d1fnfa1 8 LHLEANPDTGVLTVSWERSTTP---DITGYR--------------------------------ITTTPTNGQ--QGNSLE 50 (94)
T ss_dssp EEEEECSSSSCEEEEEECCSCS---SCCEEE--------------------------------EEEEETTTC--SSCCEE
T ss_pred cEEEEecCCCEEEEEeeCCCCC---CeeEEE--------------------------------EEEEEeccc--CceEEE
Confidence 77777765 4589999988432 255651 333322111 112233
Q ss_pred EEEcCCeEEEEEcCceecCCceEEEEEEEcCCCce
Q psy7039 404 FETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSD 438 (516)
Q Consensus 404 ~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~ 438 (516)
.........+.|.+|.+ +..|.+++.|.|..|.+
T Consensus 51 ~~~~~~~~~~~i~~L~p-~t~Y~v~V~a~~~~g~s 84 (94)
T d1fnfa1 51 EVVHADQSSCTFDNLSP-GLEYNVSVYTVKDDKES 84 (94)
T ss_dssp EEECTTCCEEECCCCCT-TSCEEEEEEEEETTEEC
T ss_pred EEeCCCccEEEECCCCC-CCEEEEEEEEEcCCCEe
Confidence 34445566899999999 99999999999988865
|
| >d1qfoa_ b.1.1.1 (A:) N-terminal domain of sialoadhesin {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: N-terminal domain of sialoadhesin species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.65 E-value=0.0016 Score=49.70 Aligned_cols=74 Identities=24% Similarity=0.290 Sum_probs=48.6
Q ss_pred cccEEEEcCCeEEEEEEEeee---c---CCceEEEECCee-------------c--CCCCceEEEE--cCCeEEEEEcCc
Q psy7039 362 IRDMTVLAGEEFTITVPFSGR---P---KPTPIWTVNGDE-------------V--SPDGRIKFET--SENQTIYRNKSA 418 (516)
Q Consensus 362 ~~~~~v~~g~~~~l~C~~~g~---p---~~~i~W~~~~~~-------------l--~~~~~~~~~~--~~~~~~l~i~~~ 418 (516)
+..+.+.+|+.+.|.|.+... + ...+.|.+.... . ....++.+.. ..+..+|.|.++
T Consensus 7 P~~v~~~~G~~V~l~C~f~~p~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v 86 (118)
T d1qfoa_ 7 PKNVQGLSGSCLLIPCIFSYPADVPVSNGITAIWYYDYSGKRQVVIHSGDPKLVDKRFRGRAELMGNMDHKVCNLLLKDL 86 (118)
T ss_dssp CSEEEEETTSCEEECCEEECCTTSCC--CCEEEEEESTTTTCEEEEESSCGGGSCTTTTTTEEECSCGGGTBCCEEECSC
T ss_pred CCEEEEecCCcEEEEEEEeeccCCCCcceEEEEEEeeceeccceeeeeccccccccccCCCeEEEEeCcCCEEEEEECCC
Confidence 466889999999999998521 1 124566663211 0 1123444432 234567999999
Q ss_pred eecCCceEEEEEEEcCCC
Q psy7039 419 KRATDSGSYTIQLVNTVG 436 (516)
Q Consensus 419 ~~~~~~g~y~c~a~n~~G 436 (516)
.. .|+|.|.|++....+
T Consensus 87 ~~-~DsG~Y~C~v~~~~~ 103 (118)
T d1qfoa_ 87 KP-EDSGTYNFRFEISDS 103 (118)
T ss_dssp CG-GGCEEEEEEEECC-C
T ss_pred Ch-hHCEEEEEEEEeCCC
Confidence 99 999999999976543
|
| >d2d9qb2 b.1.2.1 (B:204-308) Granulocyte colony-stimulating factor (GC-SF) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Granulocyte colony-stimulating factor (GC-SF) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.65 E-value=0.0033 Score=46.94 Aligned_cols=78 Identities=8% Similarity=-0.054 Sum_probs=46.4
Q ss_pred ceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEE
Q psy7039 325 IDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKF 404 (516)
Q Consensus 325 ~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~ 404 (516)
..+...+.+++.|+|.+|...++. +.+|. |.+...+.. .......
T Consensus 13 p~~~~~~~~~v~l~W~pp~~~~~~-~~~y~--------------------------------i~y~~~~~~--~~~~~~~ 57 (105)
T d2d9qb2 13 PEAAPPQAGCLQLSWEPWQPGLHI-NQKCE--------------------------------LRHKPQRGE--ASWALVG 57 (105)
T ss_dssp ------CCSCEEEEEECCGGGTTS-CEEEE--------------------------------EEEEESSSC--CCCEEEE
T ss_pred CEeecCCCCeEEEEEcCCCCCCce-eEEEE--------------------------------EEEEecCCc--cceeeee
Confidence 566677899999999998876653 44441 111111100 0111111
Q ss_pred EEcCCeEEEEEcCceecCCceEEEEEEEcCCCce
Q psy7039 405 ETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSD 438 (516)
Q Consensus 405 ~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~ 438 (516)
........+.|.+|.+ ...|.|+++|.|..|.+
T Consensus 58 ~~~~~~~~~~i~~L~p-~t~Y~frVra~n~~g~G 90 (105)
T d2d9qb2 58 PLPLEALQYELCGLLP-ATAYTLQIRCIRWPLPG 90 (105)
T ss_dssp EECSCEEEEEECSCCS-CCCEEEEEEEEECSSCC
T ss_pred cccCCcceeEEecccC-CeEEEEEEEEEeCCCCC
Confidence 2334556799999999 99999999999999874
|
| >d1ncna_ b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD86 (b7-2), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.65 E-value=0.0028 Score=47.82 Aligned_cols=70 Identities=13% Similarity=0.185 Sum_probs=42.7
Q ss_pred cEEEEcCCeEEEEEEEeeecCC---ceE--EEECCeec------------CCCC--ceEEEEcCCeEEEEEcCceecCCc
Q psy7039 364 DMTVLAGEEFTITVPFSGRPKP---TPI--WTVNGDEV------------SPDG--RIKFETSENQTIYRNKSAKRATDS 424 (516)
Q Consensus 364 ~~~v~~g~~~~l~C~~~g~p~~---~i~--W~~~~~~l------------~~~~--~~~~~~~~~~~~l~i~~~~~~~~~ 424 (516)
.+.+..|++++|.|.+...... .+. |.++.... .... +.......+..+|.|.++.. .|.
T Consensus 3 ~V~a~~G~tv~L~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~r~~~~~~~~sL~I~~v~~-~D~ 81 (110)
T d1ncna_ 3 KIQAYFNETADLPCQFANSQNQSLSELVVFWQDQENLVLNEVYLGKEKFDSVHSKYMGRTSFDSDSWTLRLHNLQI-KDK 81 (110)
T ss_dssp EEEEETTSCEEEECCCCCTTCCCGGGEEEEEEETTCCEEEEEETTEECCSSBCTTTTTSEEEETTTTEEEECSCCG-GGC
T ss_pred EEEEEeCCcEEEEEEEeCCCCCCcceeEEEeeccccceEEEEeCCceecccCCcceEEEEeccCCeEEEEECCCCh-hHC
Confidence 3567899999999998643322 233 43332210 0011 11112223445799999999 999
Q ss_pred eEEEEEEEcC
Q psy7039 425 GSYTIQLVNT 434 (516)
Q Consensus 425 g~y~c~a~n~ 434 (516)
|.|.|.+...
T Consensus 82 G~Y~C~V~~~ 91 (110)
T d1ncna_ 82 GLYQCIIHHK 91 (110)
T ss_dssp EEEEEEEEEE
T ss_pred EEEEEEEEec
Confidence 9999998644
|
| >d1dr9a2 b.1.1.3 (A:106-200) CD80, second domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C2 set domains domain: CD80, second domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.63 E-value=0.0082 Score=43.75 Aligned_cols=67 Identities=10% Similarity=0.023 Sum_probs=42.0
Q ss_pred ecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEeec--CC---eeEEEec
Q psy7039 127 KAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTT--KS---ETVLDIP 201 (516)
Q Consensus 127 ~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~--~~---~~~l~i~ 201 (516)
..++.+.|.|.+.| +.|.+.+.|.+++..+........... +. .+.|.|.
T Consensus 14 ~s~~~~~L~C~~~g-------------------------~~P~~~V~W~~n~~~~~~~~~~~~~~~~~g~y~v~S~L~v~ 68 (95)
T d1dr9a2 14 PTSNIRRIICSTSG-------------------------GFPEPHLSWLENGEELNAINTTVSQDPETELYAVSSKLDFN 68 (95)
T ss_dssp SSTTEEEEEEEEEE-------------------------ESSCEEEEEEESSCEECCSEEEEEECTTTCCEEEEEEEEEE
T ss_pred CCCCEEEEEEEECc-------------------------ccCCCEEEEecCCcEecccceeeEecCCCccEEEEEEEEcc
Confidence 35678899999993 468889999999988764432222211 11 1344443
Q ss_pred cCCCCCCeeEEEEEEcCCCc
Q psy7039 202 FCSRSDTGHYSLTLENNLGT 221 (516)
Q Consensus 202 ~~~~~d~g~Y~c~~~~~~g~ 221 (516)
..+...|+|.+....-.
T Consensus 69 ---~~~~~~~tC~V~h~~l~ 85 (95)
T d1dr9a2 69 ---MTTNHSFMCLIKYGHLR 85 (95)
T ss_dssp ---TTSCEEEEEEEEETTCC
T ss_pred ---CCccceEEEEEEecCCC
Confidence 23455788888765443
|
| >d2esve1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=96.62 E-value=0.0046 Score=46.73 Aligned_cols=71 Identities=15% Similarity=0.187 Sum_probs=48.0
Q ss_pred cccEEEEcCCeEEEEEEEeeecCCceEEEECC--e------------ec----CCCCceEEEEc-CCeEEEEEcCceecC
Q psy7039 362 IRDMTVLAGEEFTITVPFSGRPKPTPIWTVNG--D------------EV----SPDGRIKFETS-ENQTIYRNKSAKRAT 422 (516)
Q Consensus 362 ~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~--~------------~l----~~~~~~~~~~~-~~~~~l~i~~~~~~~ 422 (516)
+..+.+.+|+.++|.|..... ...+.|++.. . .. ....++..... .....|+|.++.. .
T Consensus 6 P~~~~~~~G~svtl~C~~~~~-~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~L~i~~~~~-~ 83 (111)
T d2esve1 6 PSHSVIEKGQTVTLRCDPISG-HDNLYWYRRVMGKEIKFLLHFVKESKQDESGMPNNRFLAERTGGTYSTLKVQPAEL-E 83 (111)
T ss_dssp CSEEEEETTCCEEEEEECCTT-CSEEEEEEEETTSCEEEEEEEETTEEEECTTCCSTTEEEECTTSSSEEEEESSCCG-G
T ss_pred CCEEEECCCCCEEEEEEECCC-CceEEEEEEccCCcceecceecccCcccccCCCCccEEEEcCCCCEEEEEECCccc-C
Confidence 456778999999999985432 3468898631 1 00 01234444432 3346899999999 9
Q ss_pred CceEEEEEEEcC
Q psy7039 423 DSGSYTIQLVNT 434 (516)
Q Consensus 423 ~~g~y~c~a~n~ 434 (516)
|++.|.|.+...
T Consensus 84 Dsa~YyCa~~~~ 95 (111)
T d2esve1 84 DSGVYFCASSQD 95 (111)
T ss_dssp GCEEEEEEEESS
T ss_pred CCceEEEeeeCC
Confidence 999999987643
|
| >d1dqta_ b.1.1.1 (A:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.62 E-value=0.0048 Score=47.12 Aligned_cols=70 Identities=7% Similarity=-0.060 Sum_probs=48.0
Q ss_pred ccEEEEcCCeEEEEEEEeeecCC---ceEEEECC--ee---------------cCCCCceEEEEcCCeEEEEEcCceecC
Q psy7039 363 RDMTVLAGEEFTITVPFSGRPKP---TPIWTVNG--DE---------------VSPDGRIKFETSENQTIYRNKSAKRAT 422 (516)
Q Consensus 363 ~~~~v~~g~~~~l~C~~~g~p~~---~i~W~~~~--~~---------------l~~~~~~~~~~~~~~~~l~i~~~~~~~ 422 (516)
..+.+..|+.+.|.|........ .+.|++.. .. ...........+.....|.|.++.. +
T Consensus 7 ~~~~~~~g~~v~L~C~~~~~~~~~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~-~ 85 (117)
T d1dqta_ 7 SVVLASSHGVASFPCEYSPSHNTDEVRVTVLRQTNDQMTEVCATTFTEKNTVGFLDYPFCSGTFNESRVNLTIQGLRA-V 85 (117)
T ss_dssp SEEECCTTSCEEEEEEEESCCTTCEEEEEEEEECSSCEEEEEEEEECSSSBEECTTCTTEEEEEETTEEEEEECSCCG-G
T ss_pred CEEEEcCCCcEEEEEECccCCcccceeEEEEEeCCCCCcEEEEEEeCCcccccCCCCcEEEEeCCCCEEEEEhhcCcc-c
Confidence 45677899999999998543333 47798732 11 0111122344556678899999999 9
Q ss_pred CceEEEEEEEc
Q psy7039 423 DSGSYTIQLVN 433 (516)
Q Consensus 423 ~~g~y~c~a~n 433 (516)
|+|.|.|.+..
T Consensus 86 Dsa~YyCa~~~ 96 (117)
T d1dqta_ 86 DTGLYLCKVEL 96 (117)
T ss_dssp GCEEEEEEEEE
T ss_pred cCEeEEEEEec
Confidence 99999998763
|
| >d1nkra1 b.1.1.4 (A:6-101) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Killer cell inhibitory receptor species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]
Probab=96.61 E-value=0.0023 Score=46.96 Aligned_cols=69 Identities=10% Similarity=-0.008 Sum_probs=44.6
Q ss_pred ceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCce-EEeecCCeeEEEec
Q psy7039 123 DVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRA-DVQTTKSETVLDIP 201 (516)
Q Consensus 123 ~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~-~~~~~~~~~~l~i~ 201 (516)
.-.|..|..++|.|... .....+.+++++......... .....+....+.|.
T Consensus 10 ~~~V~~G~~VTl~C~~~---------------------------~~~~~f~L~keg~~~~~~~~~~~~~~~~~~a~F~l~ 62 (96)
T d1nkra1 10 GPLVKSEETVILQCWSD---------------------------VMFEHFLLHREGMFNDTLRLIGEHHDGVSKANFSIS 62 (96)
T ss_dssp CSEEETTCCEEEEEEES---------------------------SCCSEEEEEEESSSCEEEEEECEEETTEEEEEEEES
T ss_pred CCccCCCCcEEEEECCC---------------------------CCCCEEEEEECCCcCCceeeeeeecCCceEEEEEEc
Confidence 35678999999999875 334456666655321100000 11112234689999
Q ss_pred cCCCCCCeeEEEEEEcC
Q psy7039 202 FCSRSDTGHYSLTLENN 218 (516)
Q Consensus 202 ~~~~~d~g~Y~c~~~~~ 218 (516)
+++..|+|.|+|.....
T Consensus 63 ~v~~~~~G~Y~C~y~~~ 79 (96)
T d1nkra1 63 RMTQDLAGTYRCYGSVT 79 (96)
T ss_dssp SCCGGGCEEEEEEEEBT
T ss_pred ccCcccCeEEEEEEEcC
Confidence 99999999999988653
|
| >d3d48r2 b.1.2.1 (R:101-204) Prolactin receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Prolactin receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.60 E-value=0.0047 Score=45.78 Aligned_cols=38 Identities=13% Similarity=0.056 Sum_probs=27.8
Q ss_pred CeEEEEEcCceecCCceEEEEEEEcCCCc-eeEEEEEEEe
Q psy7039 409 NQTIYRNKSAKRATDSGSYTIQLVNTVGS-DSASCKVYVV 447 (516)
Q Consensus 409 ~~~~l~i~~~~~~~~~g~y~c~a~n~~G~-~s~s~~l~v~ 447 (516)
....+.|.+|.+ ...|.++++|.|..|. +..+..+.+.
T Consensus 63 ~~~~~~i~~L~p-~t~Y~~rVrA~n~~G~ws~wS~~~~v~ 101 (104)
T d3d48r2 63 QQTEFKILSLHP-GQKYLVQVRCKPDHGYWSAWSPATFIQ 101 (104)
T ss_dssp TCSEEEECC--C-CCEEEEEEEEEESSSCCCCCCCCEEEE
T ss_pred cccEEEECCCCC-CCEEEEEEEEEeCCCCCCCCcCCEEEE
Confidence 345688999999 9999999999999997 5445555554
|
| >d2dtge3 b.1.2.1 (E:468-592) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Insulin receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.58 E-value=0.00033 Score=54.66 Aligned_cols=43 Identities=9% Similarity=0.066 Sum_probs=36.6
Q ss_pred CCCCCcccccccCCeEEEEeeCCCCCCCCCcceEEEEEEecCCC
Q psy7039 452 PPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATG 495 (516)
Q Consensus 452 ~P~~~l~~~~~~~~~~~l~W~~p~~~~~~~i~~Y~v~~~~~~~~ 495 (516)
.| .+|.+..++.+++.|+|+||..++++.|.+|.|.|++.+..
T Consensus 4 ~p-lnl~~~~~sstsv~lsW~pP~~~~~~~i~gY~I~y~~~~~~ 46 (125)
T d2dtge3 4 EL-LKFSYIRTSFDKILLRWEPYWPPDFRDLLGFMLFYKEAPYQ 46 (125)
T ss_dssp CB-CCCSEEEECSSCEEEECCCCCSSSCCCEEEECCCSSSCCTT
T ss_pred CC-EEEEEEEecCCEEEEEEeCCCccCCCcEEEEEEEEEECCCC
Confidence 44 68889999999999999998766678899999999887554
|
| >d1hxma1 b.1.1.1 (A:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), gamma-chain [TaxId: 9606]
Probab=96.57 E-value=0.0041 Score=47.71 Aligned_cols=72 Identities=15% Similarity=0.221 Sum_probs=51.1
Q ss_pred cccEEEEcCCeEEEEEEEeeec--CCceEEEEC--Ceec------------CCCCceEEEE--cCCeEEEEEcCceecCC
Q psy7039 362 IRDMTVLAGEEFTITVPFSGRP--KPTPIWTVN--GDEV------------SPDGRIKFET--SENQTIYRNKSAKRATD 423 (516)
Q Consensus 362 ~~~~~v~~g~~~~l~C~~~g~p--~~~i~W~~~--~~~l------------~~~~~~~~~~--~~~~~~l~i~~~~~~~~ 423 (516)
+..+.+.+|+.++|.|...+.. ...+.|++. |..+ ...+++.... ..+...|.|.++.+ +|
T Consensus 8 ~~sv~v~~G~~vtL~C~~s~~~~~~~~~~WyrQ~pg~~~~~l~~~~~~~~~~~~~r~~~s~~~~~~~~~L~i~~~~~-~D 86 (120)
T d1hxma1 8 HQTVPVSIGVPATLRCSMKGEAIGNYYINWYRKTQGNTMTFIYREKDIYGPGFKDNFQGDIDIAKNLAVLKILAPSE-RD 86 (120)
T ss_dssp CSEEEEETTCCEEEEEEECSSCGGGSEEEEEEEESSSCSEEEEETTTEECTTTTTTEEEEEEGGGTEEEEEESSCCG-GG
T ss_pred CCCEEECCCCCEEEEEEEeccCccCCcCeEEEccccccceeeeccccceeecccccceeeccccccceecccccccc-cC
Confidence 4567789999999999987543 346899872 1110 1124555543 34568999999999 99
Q ss_pred ceEEEEEEEcC
Q psy7039 424 SGSYTIQLVNT 434 (516)
Q Consensus 424 ~g~y~c~a~n~ 434 (516)
+|.|.|.....
T Consensus 87 sa~YyCA~~~~ 97 (120)
T d1hxma1 87 EGSYYCACDTL 97 (120)
T ss_dssp CEEEEEEEECC
T ss_pred CceeecCcccC
Confidence 99999987654
|
| >d3b5ha2 b.1.1.4 (A:23-102) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cervical EMMPRIN species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.57 E-value=0.0083 Score=40.82 Aligned_cols=58 Identities=16% Similarity=0.270 Sum_probs=43.8
Q ss_pred EEcCCeEEEEEEEeeecCC--ceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEE
Q psy7039 367 VLAGEEFTITVPFSGRPKP--TPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLV 432 (516)
Q Consensus 367 v~~g~~~~l~C~~~g~p~~--~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~ 432 (516)
...|..+.|.|.......+ .-.|.++|..+.++.. ....+.|.|.. . +++|.|.|...
T Consensus 9 ~~~~sk~~LtCnLt~s~~~i~ghrW~K~gkvl~ed~~-----~~~~tey~V~~--~-D~SGeY~CVFl 68 (80)
T d3b5ha2 9 EDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDAL-----PGQKTEFKVDS--D-DQWGEYSCVFL 68 (80)
T ss_dssp EEETTEEEEEEEEESCSSCCCEEEEESSSEEEECTTC-----CCSEEEEEECG--G-GCCEEEEEEEE
T ss_pred ccCCCCEEEEEECCCCCCceeeeEEeeCCEEccccCC-----CCCceEEEEec--C-CCCceEEEEEc
Confidence 3678889999999765544 5799999999876532 23446788876 5 89999999854
|
| >d1tdqa1 b.1.2.1 (A:1-93) Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Tenascin species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.57 E-value=0.011 Score=42.85 Aligned_cols=76 Identities=16% Similarity=0.236 Sum_probs=52.2
Q ss_pred ceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEE
Q psy7039 325 IDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKF 404 (516)
Q Consensus 325 ~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~ 404 (516)
+.+..++.+++.|+|.+|.. .+.+| .+.|...+. .......
T Consensus 10 l~v~~v~~~si~v~W~~p~~----~~~~y--------------------------------~i~~~~~~~---~~~~~~~ 50 (93)
T d1tdqa1 10 ILVRDVSDTVAFVEWTPPRA----KVDFI--------------------------------LLKYGLVGG---EGGKTTF 50 (93)
T ss_dssp EEEEEECSSCEEEEEECCSS----CCSEE--------------------------------EEEEEESSS---SCCCEEE
T ss_pred CEEEEeCCCEEEEEEEcccc----CCCce--------------------------------EEEEEeccC---cceeeEE
Confidence 88888999999999998754 23333 123332221 1122233
Q ss_pred EEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeE
Q psy7039 405 ETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSA 440 (516)
Q Consensus 405 ~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~ 440 (516)
........++|.+|.+ ...|.+++.|.|..|.+..
T Consensus 51 ~~~~~~~~~~i~~L~p-~t~Y~v~V~a~~~~g~s~~ 85 (93)
T d1tdqa1 51 RLQPPLSQYSVQALRP-GSRYEVSISAVRGTNESDA 85 (93)
T ss_dssp EECTTCSEEEECSCCT-TCEEEEEEEEEETTEECCC
T ss_pred EeCCCceEEEEeCccc-ceEEEEEEEEEeCCCCcCC
Confidence 3445556799999999 9999999999999987544
|
| >d2ntsp1 b.1.1.1 (P:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=96.56 E-value=0.0036 Score=47.52 Aligned_cols=71 Identities=15% Similarity=0.161 Sum_probs=48.4
Q ss_pred cccEEEEcCCeEEEEEEEeeecCCceEEEEC--Ceec---------------CCCCceEEE-EcCCeEEEEEcCceecCC
Q psy7039 362 IRDMTVLAGEEFTITVPFSGRPKPTPIWTVN--GDEV---------------SPDGRIKFE-TSENQTIYRNKSAKRATD 423 (516)
Q Consensus 362 ~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~--~~~l---------------~~~~~~~~~-~~~~~~~l~i~~~~~~~~ 423 (516)
+....+.+|+.++|.|...+. ...+.|++. +... ....++... .......|+|.++.+ +|
T Consensus 6 P~~~~~~~G~svtl~C~~~~~-~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~-~D 83 (113)
T d2ntsp1 6 PRYLIKTRGQQVTLSCSPISG-HRSVSWYQQTPGQGLQFLFEYFNETQRNKGNFPGRFSGRQFSNSRSEMNVSTLEL-GD 83 (113)
T ss_dssp CSEEEEETTCCEEEEEECSTT-CCEEEEEEEETTTEEEEEEEEETTEEEEECSCCTTEEEEECTTSCEEEEECSCCG-GG
T ss_pred CCeEEECCCCCEEEEEEECCC-CCEEEEEEeecccceEeeeeecccccccccccccceeeccCcCCeeEEEECCCCc-cc
Confidence 345778999999999986543 346889872 2110 112233332 334457899999999 99
Q ss_pred ceEEEEEEEcC
Q psy7039 424 SGSYTIQLVNT 434 (516)
Q Consensus 424 ~g~y~c~a~n~ 434 (516)
++.|.|.+...
T Consensus 84 sa~YyCA~~~~ 94 (113)
T d2ntsp1 84 SALYLCASSLA 94 (113)
T ss_dssp CEEEEEEEESS
T ss_pred ceeeeeeeeCC
Confidence 99999988754
|
| >d2cdeb1 b.1.1.1 (B:5-116) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=96.53 E-value=0.0023 Score=48.54 Aligned_cols=85 Identities=13% Similarity=0.156 Sum_probs=47.3
Q ss_pred cccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecC--cCceeeEEeeCCeeecc---CCceEEe-ecC
Q psy7039 120 TLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLS--EPFLNHGWSINGQVCQI---GGRADVQ-TTK 193 (516)
Q Consensus 120 ~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~p~~~i~W~~~~~~~~~---~~~~~~~-~~~ 193 (516)
.|..+.+.+|++++|.|.... ....+-|++.. .+.--+.+......... ..++... ...
T Consensus 4 sP~~~~~~~G~svtL~C~~~~---------------~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (112)
T d2cdeb1 4 TPRYLVIGTGKKITLECSQTM---------------GHDKMYWYQQDPGMELHLIHYSYGVNSTEKGDLSSESTVSRIRT 68 (112)
T ss_dssp ECSEEEEETTCCBCCEEEETT---------------CCSEEEEEEECTTSCCEEEEEESSTTCCEESSSCCCCEECCSSS
T ss_pred CCCEEEECCCCCEEEEEEEeC---------------CcccEEEEEEcCCCCcEEeeeeeccCccccccccccceeecCCC
Confidence 455678899999999998650 11234454431 11111111111111111 1122221 234
Q ss_pred CeeEEEeccCCCCCCeeEEEEEEcCC
Q psy7039 194 SETVLDIPFCSRSDTGHYSLTLENNL 219 (516)
Q Consensus 194 ~~~~l~i~~~~~~d~g~Y~c~~~~~~ 219 (516)
....|.|.+++.+|+|.|.|.+....
T Consensus 69 ~~~~L~i~~~~~~Dsa~YyCA~~~~~ 94 (112)
T d2cdeb1 69 EHFPLTLESARPSHTSQYLCASSENI 94 (112)
T ss_dssp SBCCEEBSSCCTTTCSEEEEEEECSS
T ss_pred CceEeeeccccccccccEEEEEecCC
Confidence 45689999999999999999876543
|
| >d1ugna1 b.1.1.4 (A:2-97) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Ligand binding domain of lir-1 (ilt2) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.53 E-value=0.00046 Score=50.93 Aligned_cols=66 Identities=14% Similarity=0.065 Sum_probs=43.6
Q ss_pred eEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEeecCCeeEEEeccC
Q psy7039 124 VKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFC 203 (516)
Q Consensus 124 ~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~ 203 (516)
-.|..|++++|.|... .+...+..++++.......+ .....+....+.|.++
T Consensus 13 ~~V~~G~~VTL~C~~~---------------------------~~~~~f~L~keg~~~~~~~~-~~~~~~~~a~F~i~~v 64 (96)
T d1ugna1 13 SVITQGSPVTLRCQGG---------------------------QETQEYRLYREKKTAPWITR-IPQELVKKGQFPIPSI 64 (96)
T ss_dssp SEEETTCCEEEEEECC---------------------------TTCCCEEEEESSSCCHHHHT-SCHHHHTTTEEEESSC
T ss_pred CccCCCCcEEEEEeCC---------------------------CCCCEEEEEECCCCcccEEE-ccCCCCCEEEEEEEec
Confidence 4478999999999865 34455666676543210000 0001223468999999
Q ss_pred CCCCCeeEEEEEEc
Q psy7039 204 SRSDTGHYSLTLEN 217 (516)
Q Consensus 204 ~~~d~g~Y~c~~~~ 217 (516)
+..|+|.|+|.+..
T Consensus 65 ~~~~~G~Y~C~y~~ 78 (96)
T d1ugna1 65 TWEHTGRYRCYYGS 78 (96)
T ss_dssp CGGGCEEEEEEEEE
T ss_pred CHHHCCeEEEEEeC
Confidence 99999999999764
|
| >d1j8he1 b.1.1.1 (E:2-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=96.42 E-value=0.0076 Score=45.60 Aligned_cols=71 Identities=11% Similarity=0.066 Sum_probs=47.1
Q ss_pred cccEEEEcCCeEEEEEEEeeecCCceEEEECC--eec---------------CCCCceEEE-EcCCeEEEEEcCceecCC
Q psy7039 362 IRDMTVLAGEEFTITVPFSGRPKPTPIWTVNG--DEV---------------SPDGRIKFE-TSENQTIYRNKSAKRATD 423 (516)
Q Consensus 362 ~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~--~~l---------------~~~~~~~~~-~~~~~~~l~i~~~~~~~~ 423 (516)
+..+.+.+|+.++|.|..... ...+.|++.. ..+ ....++... .......|+|.++.. +|
T Consensus 7 P~~~~~~~G~~v~l~C~~~~~-~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~-~D 84 (113)
T d1j8he1 7 SRYLVKRTGEKVFLECVQDMD-HENMFWYRQDPGLGLRLIYFSYDVKMKEKGDIPEGYSVSREKKERFSLILESAST-NQ 84 (113)
T ss_dssp CSEEEEETTCCEEECEEESSC-CSEEEEEEEETTTEEEEEEEESSTTCCEECSCCTTEEEECSSTTBCEEEESSCCG-GG
T ss_pred CCEEEECCCCCEEEEEEEcCC-ccEEEeEEecCCCCcceeeeeeeeeeeecccccccceEEeccCcEeeeEeccCcc-CC
Confidence 456778899999999986432 3468898721 100 011222222 233446799999999 99
Q ss_pred ceEEEEEEEcC
Q psy7039 424 SGSYTIQLVNT 434 (516)
Q Consensus 424 ~g~y~c~a~n~ 434 (516)
++.|.|.+...
T Consensus 85 sa~YyCa~~~~ 95 (113)
T d1j8he1 85 TSMYLCASSST 95 (113)
T ss_dssp CEEEEEEEECT
T ss_pred cccEEeeEccC
Confidence 99999998753
|
| >d1ogae1 b.1.1.1 (E:5-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=96.41 E-value=0.0058 Score=46.38 Aligned_cols=72 Identities=8% Similarity=0.056 Sum_probs=47.5
Q ss_pred cccEEEEcCCeEEEEEEEeeecCCceEEEECCe--ec---------------CCCCceEEE-EcCCeEEEEEcCceecCC
Q psy7039 362 IRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGD--EV---------------SPDGRIKFE-TSENQTIYRNKSAKRATD 423 (516)
Q Consensus 362 ~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~--~l---------------~~~~~~~~~-~~~~~~~l~i~~~~~~~~ 423 (516)
+..+.+.+|+.++|.|.... ....+.|++... .+ ....++... .......|.|.++.+ +|
T Consensus 6 P~~~~~~~G~svtl~C~~s~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~-~D 83 (114)
T d1ogae1 6 PKYLFRKEGQNVTLSCEQNL-NHDAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVSREKKESFPLTVTSAQK-NP 83 (114)
T ss_dssp CSEEEEETTCCEEECCEECS-CCSEEEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEECCSSTTBCCEEECSCCS-CC
T ss_pred CCeEEEcCCCCEEEEEEEec-CCCcEEEEeeccccCCcceeeeeeeeccccccCCCceEEEcccCCeEEEEECcCCc-CC
Confidence 45678899999999999752 344789987321 00 011122222 123345799999999 99
Q ss_pred ceEEEEEEEcCC
Q psy7039 424 SGSYTIQLVNTV 435 (516)
Q Consensus 424 ~g~y~c~a~n~~ 435 (516)
++.|.|.+....
T Consensus 84 Sa~YyCa~~~~~ 95 (114)
T d1ogae1 84 TAFYLCASSSRS 95 (114)
T ss_dssp CEEEEEEEESST
T ss_pred ceeEEEeeccCC
Confidence 999999876543
|
| >d2agjh1 b.1.1.1 (H:1-120) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Engineered (including hybrid species)
Probab=96.40 E-value=0.0056 Score=46.47 Aligned_cols=32 Identities=22% Similarity=0.278 Sum_probs=24.5
Q ss_pred CceEEeec--CCeeEEEeccCCCCCCeeEEEEEE
Q psy7039 185 GRADVQTT--KSETVLDIPFCSRSDTGHYSLTLE 216 (516)
Q Consensus 185 ~~~~~~~~--~~~~~l~i~~~~~~d~g~Y~c~~~ 216 (516)
.|+.+..+ .....|.|.+++.+|++.|.|...
T Consensus 67 gRft~s~d~s~~~~~L~i~~l~~eDsAvYyCAr~ 100 (120)
T d2agjh1 67 SRLTITKDASKKQVVLTLTNLDPVDTATYYCART 100 (120)
T ss_dssp SSEEEECCTTTTEEEEEEESCCGGGCEEEEEEEE
T ss_pred cccceecccccceeeeeEEeeeeccceEEeeEec
Confidence 56666543 234689999999999999999744
|
| >d1ac6a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]
Probab=96.40 E-value=0.002 Score=48.74 Aligned_cols=73 Identities=15% Similarity=0.205 Sum_probs=50.2
Q ss_pred ccccEEEEcCCeEEEEEEEeeecCCceEEEECC--eec------------CCCCceEEEEc--CCeEEEEEcCceecCCc
Q psy7039 361 SIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNG--DEV------------SPDGRIKFETS--ENQTIYRNKSAKRATDS 424 (516)
Q Consensus 361 ~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~--~~l------------~~~~~~~~~~~--~~~~~l~i~~~~~~~~~ 424 (516)
.+..+.+.+|+.++|.|.........+.|++.. ..+ ....++..... .....|+|.++.+ +|+
T Consensus 6 ~p~~~~~~~G~~vtl~C~~~~~~~~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~f~~~~~~~~~~~~L~i~~~~~-~Ds 84 (110)
T d1ac6a_ 6 TEGQVALSEEDFLTIHCNYSASGYPALFWYVQYPGEGPQFLFRASRDKEKGSSRGFEATYNKEATSFHLQKASVQE-SDS 84 (110)
T ss_dssp CCSEEEEETTEEEEECEEEECSSCCEEEEEEECTTSCCEEEEEECSTTCEEEETTEEEECBTTTTBCCEEEEEECG-GGC
T ss_pred CCCeEEECCCCCEEEEEEecCCCCcceEEEEcCCCCceEEeeeeeeecccCCCCceeeeecCCCCEEeeeecCcCc-CCC
Confidence 345678999999999998765545568998732 110 01234443322 3346799999999 999
Q ss_pred eEEEEEEEcC
Q psy7039 425 GSYTIQLVNT 434 (516)
Q Consensus 425 g~y~c~a~n~ 434 (516)
+.|.|.+...
T Consensus 85 a~YyCA~~~~ 94 (110)
T d1ac6a_ 85 AVYYCALSGG 94 (110)
T ss_dssp EEEEEEEEET
T ss_pred cccceeecCC
Confidence 9999988654
|
| >d1iqdb1 b.1.1.1 (B:1-114) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 1 [TaxId: 9606]
Probab=96.38 E-value=0.0064 Score=45.61 Aligned_cols=82 Identities=18% Similarity=0.282 Sum_probs=49.7
Q ss_pred ceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEe---e--CCeee---ccCCceEEeecC-
Q psy7039 123 DVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWS---I--NGQVC---QIGGRADVQTTK- 193 (516)
Q Consensus 123 ~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~---~--~~~~~---~~~~~~~~~~~~- 193 (516)
...++.|+++.|.|.+.+ |. -....+.|++. .|---+.|. . .+... ....|+.+..+.
T Consensus 9 ~~~~kPg~sv~LsC~~SG---~s---------~~~y~~~W~RQ-~PGkglEwlg~i~~~~~~~~y~~~~~gR~tiS~D~s 75 (117)
T d1iqdb1 9 AEVKKPGASVKVSCKVSG---YT---------LTELPVHWVRQ-APGKGLEWVGSFDPESGESIYAREFQGSVTMTADTS 75 (117)
T ss_dssp CEEECTTCCEEEEEEEES---SC---------GGGSCEEEEEE-CTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETT
T ss_pred CceECCCCCEEEEEEEcC---CC---------CCCCCEEEEEE-CCCCceeeeeecCCccccceecceeeeeeeeecccc
Confidence 356788999999999881 10 12234566663 222233332 1 11111 123566666433
Q ss_pred -CeeEEEeccCCCCCCeeEEEEEEc
Q psy7039 194 -SETVLDIPFCSRSDTGHYSLTLEN 217 (516)
Q Consensus 194 -~~~~l~i~~~~~~d~g~Y~c~~~~ 217 (516)
....|.|.+++.+|++.|.|....
T Consensus 76 ~~t~~L~i~~L~~eDtAvYYCA~~~ 100 (117)
T d1iqdb1 76 TNIAYMELSSLRSDDTAVYYCAVPD 100 (117)
T ss_dssp TTEEEEEECSCCGGGCEEEEEEECS
T ss_pred cceEEEeecccCcCcceEEEEeEcC
Confidence 345799999999999999998643
|
| >d1dr9a2 b.1.1.3 (A:106-200) CD80, second domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C2 set domains domain: CD80, second domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.37 E-value=0.013 Score=42.59 Aligned_cols=67 Identities=18% Similarity=0.181 Sum_probs=43.1
Q ss_pred cCCeEEEEEEEee-ecCCceEEEECCeecCCCCceEEEEcCCe-----EEEEEcCceecCCceEEEEEEEcCCCcee
Q psy7039 369 AGEEFTITVPFSG-RPKPTPIWTVNGDEVSPDGRIKFETSENQ-----TIYRNKSAKRATDSGSYTIQLVNTVGSDS 439 (516)
Q Consensus 369 ~g~~~~l~C~~~g-~p~~~i~W~~~~~~l~~~~~~~~~~~~~~-----~~l~i~~~~~~~~~g~y~c~a~n~~G~~s 439 (516)
.++.+.|.|.+.| .|.+.|.|.+++..+............+. +.|.| .. .+...|.|.+....-..+
T Consensus 15 s~~~~~L~C~~~g~~P~~~V~W~~n~~~~~~~~~~~~~~~~~g~y~v~S~L~v---~~-~~~~~~tC~V~h~~l~~~ 87 (95)
T d1dr9a2 15 TSNIRRIICSTSGGFPEPHLSWLENGEELNAINTTVSQDPETELYAVSSKLDF---NM-TTNHSFMCLIKYGHLRVN 87 (95)
T ss_dssp STTEEEEEEEEEEESSCEEEEEEESSCEECCSEEEEEECTTTCCEEEEEEEEE---ET-TSCEEEEEEEEETTCCEE
T ss_pred CCCEEEEEEEECcccCCCEEEEecCCcEecccceeeEecCCCccEEEEEEEEc---cC-CccceEEEEEEecCCCCc
Confidence 5677899999987 58889999999987754332222221111 23444 34 556789999887755433
|
| >d1muja1 b.1.1.2 (A:84-183) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-A group [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Class II MHC alpha chain, C-terminal domain species: Mouse (Mus musculus), I-A group [TaxId: 10090]
Probab=96.32 E-value=0.006 Score=44.95 Aligned_cols=67 Identities=19% Similarity=0.093 Sum_probs=38.2
Q ss_pred EecCCeEEEEEeeeeccccccCccccccccccCccceeecCc--CceeeEEeeCCeeeccCCce--EE-eecCCeeEEEe
Q psy7039 126 IKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSE--PFLNHGWSINGQVCQIGGRA--DV-QTTKSETVLDI 200 (516)
Q Consensus 126 v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--p~~~i~W~~~~~~~~~~~~~--~~-~~~~~~~~l~i 200 (516)
+..|+..+|.|.+. |. +...++|.++|..+..+... .. ..++.......
T Consensus 14 ~~~~~~~tL~C~v~--------------------------gFyP~~i~v~W~~ng~~v~~~~~~t~~~~~~dgtf~~~s~ 67 (100)
T d1muja1 14 VLLGQPNTLICFVD--------------------------NIFPPVINITWLRNSKSVADGVYETSFFVNRDYSFHKLSY 67 (100)
T ss_dssp CCTTSCEEEEEEEE--------------------------EECSSCCEEEEEESSSBCCSSEEECCCEECTTSCEEEEEE
T ss_pred cccCCCEEEEEEEE--------------------------eEECCCCEEEEEeCCeeccCCceeeeeEECCCCCEEEEEE
Confidence 34578889999999 42 35789999999887643111 11 11112112222
Q ss_pred ccCCCCCCeeEEEEEEcC
Q psy7039 201 PFCSRSDTGHYSLTLENN 218 (516)
Q Consensus 201 ~~~~~~d~g~Y~c~~~~~ 218 (516)
-.+..++.+.|+|.+...
T Consensus 68 l~v~~~~~~~ytC~V~H~ 85 (100)
T d1muja1 68 LTFIPSDDDIYDCKVEHW 85 (100)
T ss_dssp EEECCCTTCCEEEEEECT
T ss_pred eEEcCCCCCEEEEEEEEC
Confidence 222334555688887754
|
| >d2bnub1 b.1.1.1 (B:2-113) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=96.30 E-value=0.007 Score=45.74 Aligned_cols=71 Identities=13% Similarity=0.106 Sum_probs=46.3
Q ss_pred cccEEEEcCCeEEEEEEEeeecCCceEEEECC--eec---------------C-CCCceEEEEcCCeEEEEEcCceecCC
Q psy7039 362 IRDMTVLAGEEFTITVPFSGRPKPTPIWTVNG--DEV---------------S-PDGRIKFETSENQTIYRNKSAKRATD 423 (516)
Q Consensus 362 ~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~--~~l---------------~-~~~~~~~~~~~~~~~l~i~~~~~~~~ 423 (516)
+....+.+|+.++|.|..... ...+.|++.. ..+ . ....+..........|.|.++.+ +|
T Consensus 6 P~~~~~~~G~svtl~C~~s~~-~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~-~D 83 (112)
T d2bnub1 6 PKFQVLKTGQSMTLQCAQDMN-HEYMSWYRQDPGMGLRLIHYSVGAGITDQGEVPNGYNVSRSTTEDFPLRLLSAAP-SQ 83 (112)
T ss_dssp CSEEEEETTCCEEEEEEESSC-CSEEEEEEEETTTEEEEEEEEEETTEEEECSSCTTCEECCSSSSBCCEEESSCCG-GG
T ss_pred CCeEEECCCCCEEEEEEEECC-ccceEecccccccCccceeeEeccCceecCccccceeEecCCCCEEEEEECCCCH-HH
Confidence 345678999999999987533 3468998721 100 0 01112222233345799999999 99
Q ss_pred ceEEEEEEEcC
Q psy7039 424 SGSYTIQLVNT 434 (516)
Q Consensus 424 ~g~y~c~a~n~ 434 (516)
++.|.|.+...
T Consensus 84 savYyCA~~~~ 94 (112)
T d2bnub1 84 TSVYFCASSYV 94 (112)
T ss_dssp CEEEEEEEECS
T ss_pred CEEEEEeecCC
Confidence 99999987643
|
| >d1f3dh1 b.1.1.1 (H:1-121) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=96.30 E-value=0.0047 Score=46.40 Aligned_cols=78 Identities=18% Similarity=0.250 Sum_probs=48.7
Q ss_pred eEEecCCeEEEEEeeeeccccccCcccccccc-ccCccceeecCcCceeeEEe---e-C-Ceee-c--cCCceEEeec--
Q psy7039 124 VKIKAGQSFSFDVKEFRELSYTKSPLRALGVR-ANSTKGWVKLSEPFLNHGWS---I-N-GQVC-Q--IGGRADVQTT-- 192 (516)
Q Consensus 124 ~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~p~~~i~W~---~-~-~~~~-~--~~~~~~~~~~-- 192 (516)
..++.|++++|.|.+++ .. .+..+.|+.. .|-..+.|. . . +... . -..|+.+..+
T Consensus 10 ~~~kPG~sl~LsC~~SG-------------~s~~~y~~~W~RQ-~PGkglewl~~i~~~~~~~~y~~~~~gRftis~D~s 75 (115)
T d1f3dh1 10 ELVKPGASVKVSCKASG-------------YSFIDYNIHWVKQ-SHGKSLEWIGYIVPYSGGTTFNQKFKGKATLTVDKS 75 (115)
T ss_dssp EEECTTCCEEEEEEEES-------------SCGGGSCEEEEEE-ETTTEEEEEEEECTTTCCEEECGGGBTTEEEEEETT
T ss_pred cEECCCCCEEEEEEEcc-------------ccCCCCCcceeEE-cCCCccEEeeccCCCCCcccccceeeEEEEEeeccC
Confidence 45788999999999882 11 2345567664 333334443 1 1 1111 1 1256666543
Q ss_pred CCeeEEEeccCCCCCCeeEEEEE
Q psy7039 193 KSETVLDIPFCSRSDTGHYSLTL 215 (516)
Q Consensus 193 ~~~~~l~i~~~~~~d~g~Y~c~~ 215 (516)
.....|.|.+++.+|++.|.|..
T Consensus 76 ~~t~~L~i~~l~~eDtAvYYCAr 98 (115)
T d1f3dh1 76 SSTAFMHLNSLTFEDSAVYYCAN 98 (115)
T ss_dssp TTEEEEEECSCCGGGCEEEEEEE
T ss_pred ceeeEeeeeecCcCCcEEEEEec
Confidence 33457999999999999999963
|
| >d1hxmb1 b.1.1.1 (B:1-123) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), delta-chain [TaxId: 9606]
Probab=96.28 E-value=0.011 Score=45.47 Aligned_cols=70 Identities=13% Similarity=0.229 Sum_probs=49.6
Q ss_pred ccEEEEcCCeEEEEEEEeeec--CCceEEEECC--e-------------ec-C---CCCceEEEE--cCCeEEEEEcCce
Q psy7039 363 RDMTVLAGEEFTITVPFSGRP--KPTPIWTVNG--D-------------EV-S---PDGRIKFET--SENQTIYRNKSAK 419 (516)
Q Consensus 363 ~~~~v~~g~~~~l~C~~~g~p--~~~i~W~~~~--~-------------~l-~---~~~~~~~~~--~~~~~~l~i~~~~ 419 (516)
..+...+|+.+.|.|.+.|.. ...+.|++.. . .. . ...+|.+.. ..+...|.|.++.
T Consensus 9 ~s~t~~~g~t~~LsC~~sg~~~s~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~i~~l~ 88 (123)
T d1hxmb1 9 ISSTKTLSKTARLECVVSGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPETSTSTLTIHNVE 88 (123)
T ss_dssp SEEEEETTCCEEEEEEEESSCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETTTTEEEEEECSCC
T ss_pred CeEEeCCCCCEEEEEEEcCCCcccCeEEEEEECCCCCceEeeecccccccccccccccceeEEeeeccccceeecccccc
Confidence 346778999999999997653 3368898721 1 00 0 124676654 3456789999999
Q ss_pred ecCCceEEEEEEEc
Q psy7039 420 RATDSGSYTIQLVN 433 (516)
Q Consensus 420 ~~~~~g~y~c~a~n 433 (516)
+ +|++.|.|.+..
T Consensus 89 ~-~Dsa~YyCA~~~ 101 (123)
T d1hxmb1 89 K-QDIATYYCALWE 101 (123)
T ss_dssp G-GGCEEEEEEEEE
T ss_pred c-ccCcEEEEeeeC
Confidence 9 999999998754
|
| >d1axib2 b.1.2.1 (B:131-236) Growth hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Growth hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.26 E-value=0.0038 Score=46.72 Aligned_cols=62 Identities=21% Similarity=0.338 Sum_probs=38.4
Q ss_pred CCCCCCCcccccc------cCCeEEEEeeCCCC---CCCCCcceEEEEEEecCCCceeee--EEeeeeeeeeEE
Q psy7039 450 PSPPQGPLDVSDI------TPESCSLSWKPPLD---DGGSPITNYVVEKYESATGVSDLF--ISKSEVKTGSLM 512 (516)
Q Consensus 450 p~~P~~~l~~~~~------~~~~~~l~W~~p~~---~~~~~i~~Y~v~~~~~~~~~~~~~--~~~~~~~~~~l~ 512 (516)
|+|| .+|.++.. ...++.|+|++|.. +.+..+..|.|+|+..+...+... .....+...+|.
T Consensus 1 PdPP-~~l~~t~~~~s~~~~~~~v~vsW~pP~~~~~~~~~~~l~Y~v~y~~~~~~~w~~~~~~~~~~~~i~~L~ 73 (106)
T d1axib2 1 PDPP-IALNWTLLNVSLTGIHADIQVRWEAPRNADIQKGWMVLEYELQYKEVNETKWKMMDPILTTSVPVYSLK 73 (106)
T ss_dssp CCCC-EEEEEEECSCCSSCSEEEEEEEEECCTTSCTTTTSCCEEEEEEEEETTCSSCEECCCBSSSEEEEEEEE
T ss_pred CcCC-CCceeeEeeeccccccCeEEEEEcCCCccCCCCCeeEEEEEEeeeecCCccceeeeecccceEEECCCC
Confidence 5677 66655321 23579999999853 233457789999998877663322 223455555554
|
| >d1jbja2 b.1.1.4 (A:1-100) CD3 epsilon chain ectodomain fragment {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: CD3 epsilon chain ectodomain fragment species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.26 E-value=0.0042 Score=43.77 Aligned_cols=52 Identities=27% Similarity=0.286 Sum_probs=39.4
Q ss_pred cCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEeecCCeeEEEeccCCC-C
Q psy7039 128 AGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFCSR-S 206 (516)
Q Consensus 128 ~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~-~ 206 (516)
.|.+|.|+|... +. ..|.|.+++..+.. .....|.+.+.+. +
T Consensus 13 SGTtV~LTCP~~--------------------------~~--~~I~Wkkn~~~i~g---------~~~~~L~L~~FSE~e 55 (100)
T d1jbja2 13 SGTSVELTCPLD--------------------------SD--ENLKWEKNGQELPQ---------KHDKHLVLQDFSEVE 55 (100)
T ss_dssp ETTEEEEECSSC--------------------------CC--TTCEEEETTEEECS---------CCCSEEEEESCCTTT
T ss_pred eCCEEEEECCCC--------------------------CC--CceEEeeccccCCC---------CCCcEEEEccccccc
Confidence 689999999977 43 46999999988763 2233677777655 8
Q ss_pred CCeeEEEEEE
Q psy7039 207 DTGHYSLTLE 216 (516)
Q Consensus 207 d~g~Y~c~~~ 216 (516)
++|.|.|...
T Consensus 56 ~SGyY~C~~~ 65 (100)
T d1jbja2 56 DSGYYVCYTP 65 (100)
T ss_dssp SCEEEEEECS
T ss_pred cCcceEEecC
Confidence 9999999743
|
| >d1ypzf1 b.1.1.1 (F:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), gamma-chain [TaxId: 9606]
Probab=96.25 E-value=0.0087 Score=45.77 Aligned_cols=71 Identities=13% Similarity=0.070 Sum_probs=48.5
Q ss_pred cccEEEEcCCeEEEEEEEeeec--CCceEEEECC--ee---c-------------CCCCceEEEE--cCCeEEEEEcCce
Q psy7039 362 IRDMTVLAGEEFTITVPFSGRP--KPTPIWTVNG--DE---V-------------SPDGRIKFET--SENQTIYRNKSAK 419 (516)
Q Consensus 362 ~~~~~v~~g~~~~l~C~~~g~p--~~~i~W~~~~--~~---l-------------~~~~~~~~~~--~~~~~~l~i~~~~ 419 (516)
+..+...+|+.++|.|.+.+.. ...+.|++.. .. + ....++.+.. ..+...|.|.++.
T Consensus 8 ~~sv~~~~G~svtL~C~~~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~r~~~s~~~~~~~~~L~I~~l~ 87 (120)
T d1ypzf1 8 EISISRPRDETAQISCKVFIESFRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNPSASTSILTIYSLE 87 (120)
T ss_dssp CSEEEEETTSCEEEEEEECCGGGGGCCEEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEECCTTTEEEEEECSCC
T ss_pred CCEEEecCCCcEEEEEEEecccccCCcccEEEeCCcccccccccccccccceeeeccccccccccccccccccccccccc
Confidence 3456778999999999876543 3468898731 10 0 0123444443 3456789999999
Q ss_pred ecCCceEEEEEEEc
Q psy7039 420 RATDSGSYTIQLVN 433 (516)
Q Consensus 420 ~~~~~g~y~c~a~n 433 (516)
. +|++.|.|.+.-
T Consensus 88 ~-~Dsa~YyCA~~~ 100 (120)
T d1ypzf1 88 E-EDEAIYYCSYGE 100 (120)
T ss_dssp G-GGCSEEEEEECC
T ss_pred c-ccceeEEEEEcC
Confidence 9 999999997753
|
| >d2b5ib2 b.1.2.1 (B:104-207) Interleukin-2 receptor beta chain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Interleukin-2 receptor beta chain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.23 E-value=0.0083 Score=44.32 Aligned_cols=29 Identities=7% Similarity=0.087 Sum_probs=24.6
Q ss_pred CCeEEEEEcCceecCCceEEEEEEEcCCCc
Q psy7039 408 ENQTIYRNKSAKRATDSGSYTIQLVNTVGS 437 (516)
Q Consensus 408 ~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~ 437 (516)
.....+.|.+|.+ +..|.++++|.|..|.
T Consensus 59 ~~~~~~~i~~L~p-~t~Y~~rVra~~~~g~ 87 (104)
T d2b5ib2 59 QKQEWICLETLTP-DTQYEFQVRVKPLQGE 87 (104)
T ss_dssp SCCCEEEECSCCT-TCEEEEEEEEEESCCS
T ss_pred CCcEEEEECCCCC-CCEEEEEEEEEECCCC
Confidence 3455789999999 9999999999988775
|
| >d1i8lc_ b.1.1.1 (C:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.22 E-value=0.0052 Score=47.00 Aligned_cols=70 Identities=13% Similarity=0.054 Sum_probs=46.7
Q ss_pred ccEEEEcCCeEEEEEEEeeecCC---ceEEEECCee--c---------------CCCCceEEEEcCCeEEEEEcCceecC
Q psy7039 363 RDMTVLAGEEFTITVPFSGRPKP---TPIWTVNGDE--V---------------SPDGRIKFETSENQTIYRNKSAKRAT 422 (516)
Q Consensus 363 ~~~~v~~g~~~~l~C~~~g~p~~---~i~W~~~~~~--l---------------~~~~~~~~~~~~~~~~l~i~~~~~~~ 422 (516)
..+.+..|+.++|.|........ .+.|++.... . ..........+.....|.|.++.. .
T Consensus 7 ~~~~~~~g~~vtL~C~~~~~~~~~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~-~ 85 (118)
T d1i8lc_ 7 AVVLASSRGIASFVCEYASPGKATEVRVTVLRQADSQVTEVCAATYMMGNELTFLDDSICTGTSSGNQVNLTIQGLRA-M 85 (118)
T ss_dssp SEEECCSSSCEEEEEEECCCSCCSEEEEEEEEESTTCCCEEEEEEEETTSCCCCCSSCSCCCCBCSSEEEEEECSCCG-G
T ss_pred CEEEEeCCCcEEEEEEccccccccceeEEEEEECCCCeeEEEEEEeCCCCEecccCCcEEeEcCCCCEEEEEeecccc-C
Confidence 44667889999999998544333 5889874210 0 001111223344567899999999 9
Q ss_pred CceEEEEEEEc
Q psy7039 423 DSGSYTIQLVN 433 (516)
Q Consensus 423 ~~g~y~c~a~n 433 (516)
|.+.|.|.+..
T Consensus 86 Dsa~YyCa~~~ 96 (118)
T d1i8lc_ 86 DTGLYICKVEL 96 (118)
T ss_dssp GCEEEEEEEEE
T ss_pred CCEEEEEeEec
Confidence 99999998764
|
| >d1cd9b2 b.1.2.1 (B:108-213) Granulocyte colony-stimulating factor (GC-SF) receptor {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Granulocyte colony-stimulating factor (GC-SF) receptor species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.18 E-value=0.0041 Score=46.51 Aligned_cols=40 Identities=23% Similarity=0.183 Sum_probs=26.8
Q ss_pred CcccccccCCeEEEEeeCCCCCCCCCcceEEEEEEecCCCc
Q psy7039 456 PLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATGV 496 (516)
Q Consensus 456 ~l~~~~~~~~~~~l~W~~p~~~~~~~i~~Y~v~~~~~~~~~ 496 (516)
.+.+...+.+++.|+|++|. +.++.+.+|.|+|+......
T Consensus 13 ~p~~~~~~~~~i~v~W~pp~-~~~~~~~~Y~i~y~~~~~~~ 52 (106)
T d1cd9b2 13 GPDVVSHQPGCLWLSWKPWK-PSEYMEQECELRYQPQLKGA 52 (106)
T ss_dssp -------CCSCEEEEEECCG-GGTTSCEEEEEEEEESSTTC
T ss_pred CCeEecCCCCEEEEEEcCcc-cCCccceEEEEEEeeccccc
Confidence 44666778899999999886 45667899999999765443
|
| >d1iarb2 b.1.2.1 (B:97-197) Interleukin-4 receptor alpha chain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Interleukin-4 receptor alpha chain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.16 E-value=0.0044 Score=45.75 Aligned_cols=47 Identities=23% Similarity=0.442 Sum_probs=32.6
Q ss_pred CCCCCCCCcccccccCCeEEEEeeCCCCCCCC--CcceEEEEEEecCCCc
Q psy7039 449 KPSPPQGPLDVSDITPESCSLSWKPPLDDGGS--PITNYVVEKYESATGV 496 (516)
Q Consensus 449 ~p~~P~~~l~~~~~~~~~~~l~W~~p~~~~~~--~i~~Y~v~~~~~~~~~ 496 (516)
+|.+| .+|.+..++.+++.|+|++|...++. ....|.|+|+......
T Consensus 1 kP~~P-~~l~v~~~~~~s~~v~W~~P~~~~~~~~~~~~y~v~y~~~~~~~ 49 (101)
T d1iarb2 1 KPRAP-GNLTVHTNVSDTLLLTWSNPYPPDNYLYNHLTYAVNIWSENDPA 49 (101)
T ss_dssp CCCCC-EEEEEC----CCEEEEEECSSCTTSTTGGGCEEEEEEEESSSCS
T ss_pred CcccC-CcCEEEEEeCCeEEEEEccccCCCCccceeeEEEEeeeccccee
Confidence 58888 89999999999999999987544332 2346999998876655
|
| >d1ai1h1 b.1.1.1 (H:1-112) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]
Probab=96.14 E-value=0.0086 Score=45.22 Aligned_cols=81 Identities=21% Similarity=0.322 Sum_probs=47.4
Q ss_pred cceEEecCCeEEEEEeeeeccccccCccccccccc---cCccceeecCcCceeeEEe---e-CCeee-c--cCCceEEee
Q psy7039 122 NDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRA---NSTKGWVKLSEPFLNHGWS---I-NGQVC-Q--IGGRADVQT 191 (516)
Q Consensus 122 ~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~p~~~i~W~---~-~~~~~-~--~~~~~~~~~ 191 (516)
....++.|++++|.|.+. |... +.-+.|++. .|--.+.|. . ++... . ...|+.+..
T Consensus 8 G~~~vkPg~sl~LsC~~S-------------G~s~~~s~y~~~W~RQ-~PGkglEwl~~i~~~g~t~y~~s~kgRfTiSr 73 (120)
T d1ai1h1 8 GPAVIKPSQSLSLTCIVS-------------GFSITRTNYCWHWIRQ-APGKGLEWMGRICYEGSIYYSPSIKSRSTISR 73 (120)
T ss_dssp CCSEECSSSCEEEEEEEE-------------SSCTTSTTEEEEEEEE-CTTSCEEEEEEEETTSCEEECHHHHTTEEEEE
T ss_pred CCceECCCCCEEEEEEEc-------------ccccccCccccCcccC-CCcccceeeeecccccchhhchhhcccceecc
Confidence 345678899999999988 2211 123445553 222223332 1 11111 1 125666654
Q ss_pred c--CCeeEEEeccCCCCCCeeEEEEEE
Q psy7039 192 T--KSETVLDIPFCSRSDTGHYSLTLE 216 (516)
Q Consensus 192 ~--~~~~~l~i~~~~~~d~g~Y~c~~~ 216 (516)
+ .....|.|.+++.+|++.|.|...
T Consensus 74 D~s~n~~~L~~~sL~~eDtAvYYCAr~ 100 (120)
T d1ai1h1 74 DTSLNKFFIQLISVTNEDTAMYYCSRE 100 (120)
T ss_dssp ETTTTEEEEEESSCCGGGCEEEEEEEE
T ss_pred ccccceeecceeeeeccceeEEEEEec
Confidence 3 334679999999999999999643
|
| >d1xaua_ b.1.1.4 (A:) B and T lymphocyte attenuator, Btla {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: B and T lymphocyte attenuator, Btla species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.13 E-value=0.013 Score=40.40 Aligned_cols=74 Identities=22% Similarity=0.252 Sum_probs=47.4
Q ss_pred cceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEee-CCeeec---cC-Cce-EEeecC--
Q psy7039 122 NDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSI-NGQVCQ---IG-GRA-DVQTTK-- 193 (516)
Q Consensus 122 ~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~-~~~~~~---~~-~~~-~~~~~~-- 193 (516)
..-.+..|+.+.|.|.++ | -.-.|+++|-+ ++.... .. ++. .....+
T Consensus 11 S~hs~~~G~~f~leCPVk----Y---------------------C~~RPnVtWCKlngt~cv~Le~~pq~~TsW~e~~ni 65 (104)
T d1xaua_ 11 SKHSAWTGELFKIECPVK----Y---------------------CVHRPNVTWCKHNGTIWVPLEVGPQLYTSWEENRSV 65 (104)
T ss_dssp EEEEECTTSCEEEEEEEE----C---------------------SSSCCCEEEEEECSSSEEECCCBTTEEEEEECSSSS
T ss_pred ceeeEecCCceEecCcch----h---------------------hcCCCCcEEEEeCCcEEEEeecCCccccchhhcCCe
Confidence 345678999999999998 2 23456777765 443222 11 111 222222
Q ss_pred CeeEEEeccCCCCCCeeEEEEEEcCCC
Q psy7039 194 SETVLDIPFCSRSDTGHYSLTLENNLG 220 (516)
Q Consensus 194 ~~~~l~i~~~~~~d~g~Y~c~~~~~~g 220 (516)
.-..|.+..+-++|.|.|+|.+.-..+
T Consensus 66 s~FvLhF~pvl~sDnGsYrCSanf~s~ 92 (104)
T d1xaua_ 66 PVFVLHFKPIHLSDNGSYSCSTNFNSQ 92 (104)
T ss_dssp CEEEEEETTCCGGGCEEEEEEEEETTE
T ss_pred eEEEEEeeeeeecCCCceEEecCCChh
Confidence 235789999999999999999864433
|
| >d2g5ra1 b.1.1.1 (A:24-144) N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.12 E-value=0.0035 Score=48.19 Aligned_cols=72 Identities=17% Similarity=0.302 Sum_probs=47.8
Q ss_pred cccEEEEcCCeEEEEEEEeee----cC---CceEEEECCeec---------------C--CCCceEEEE--cCCeEEEEE
Q psy7039 362 IRDMTVLAGEEFTITVPFSGR----PK---PTPIWTVNGDEV---------------S--PDGRIKFET--SENQTIYRN 415 (516)
Q Consensus 362 ~~~~~v~~g~~~~l~C~~~g~----p~---~~i~W~~~~~~l---------------~--~~~~~~~~~--~~~~~~l~i 415 (516)
+..+.+.+|..+.|.|.+... .. ..+.|++....- . ...++.+.. ..+..+|.|
T Consensus 8 ~~svtv~~G~~V~ipC~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I 87 (121)
T d2g5ra1 8 QSSVTVQEGMCVHVRCSFSYPVDSQTDSDPVHGYWFRAGNDISWKAPVATNNPAWAVQEETRDRFHLLGDPQTKNCTLSI 87 (121)
T ss_dssp CSEEEECTTCCEEECCEEECC--CTTTTSCCEEEEEECC-----CCCSEESCTTSCCCTTTTTTEEECSCGGGTBCCEEE
T ss_pred CCEEEEccCCcEEEEEEEeCCCCCCcccccEEEEeeEecCCCceEEEEeeCCCCceeccccceEEEEeeeCcCCEEEEEE
Confidence 456789999999999998421 11 246787643210 0 023444432 234568999
Q ss_pred cCceecCCceEEEEEEEcC
Q psy7039 416 KSAKRATDSGSYTIQLVNT 434 (516)
Q Consensus 416 ~~~~~~~~~g~y~c~a~n~ 434 (516)
.++.. .|+|.|.|.+...
T Consensus 88 ~~v~~-~DsG~Y~C~v~~~ 105 (121)
T d2g5ra1 88 RDARM-SDAGRYFFRMEKG 105 (121)
T ss_dssp CSCCG-GGCEEEEEEEEET
T ss_pred CCCCh-HHCEEEEEEEEeC
Confidence 99999 9999999998754
|
| >d1nfdb1 b.1.1.1 (B:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), beta-chain [TaxId: 10090]
Probab=96.11 E-value=0.0098 Score=44.93 Aligned_cols=73 Identities=12% Similarity=0.076 Sum_probs=48.6
Q ss_pred cccEEEEcCCeEEEEEEEeeecCCceEEEECCee--c---------------CCCCceEEE-EcCCeEEEEEcCceecCC
Q psy7039 362 IRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDE--V---------------SPDGRIKFE-TSENQTIYRNKSAKRATD 423 (516)
Q Consensus 362 ~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~--l---------------~~~~~~~~~-~~~~~~~l~i~~~~~~~~ 423 (516)
+..+.+.+|+.++|.|..... ...+.|++.... + ....++... .......|+|.++.+ .|
T Consensus 8 P~~~~~~~G~~v~l~C~~~~~-~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~-~D 85 (113)
T d1nfdb1 8 PRHIIKEKGGRSVLTCIPISG-HSNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQFDDYHSEMNMSALEL-ED 85 (113)
T ss_dssp CSEEEEETTCCCEEEEECCTT-CCEEEEEEBCSSCCCEEEEEEETTTEEEESSCCTTCCCEECTTSCEEEECCSCCG-GG
T ss_pred CCEEEEeCCCCEEEEEEeCCC-CCEEEEEEECCcCCCcceeeeeecccccCCCcccceeeEcCCCCeEEEEecccCc-CC
Confidence 456778999999999986432 346899874210 0 011233332 223346899999999 99
Q ss_pred ceEEEEEEEcCCC
Q psy7039 424 SGSYTIQLVNTVG 436 (516)
Q Consensus 424 ~g~y~c~a~n~~G 436 (516)
++.|.|.+....+
T Consensus 86 sa~YyCa~~~~~~ 98 (113)
T d1nfdb1 86 SAMYFCASSLRWG 98 (113)
T ss_dssp CEEECEEEESSSC
T ss_pred ceeEEEEeecCCC
Confidence 9999998765443
|
| >d1fo0b_ b.1.1.1 (B:) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), beta-chain [TaxId: 10090]
Probab=96.11 E-value=0.0093 Score=45.00 Aligned_cols=72 Identities=11% Similarity=0.039 Sum_probs=44.2
Q ss_pred CcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeC--Ceee-------------c-
Q psy7039 119 STLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSIN--GQVC-------------Q- 182 (516)
Q Consensus 119 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~--~~~~-------------~- 182 (516)
..|..+.+.+|++++|.|... ......+.|++- +..+ .
T Consensus 6 Q~P~~~~~~~G~~vtL~C~~~--------------------------~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~ 59 (112)
T d1fo0b_ 6 QNPRWRLVPRGQAVNLRCILK--------------------------NSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVK 59 (112)
T ss_dssp EECSEEECCTTCCEEEEEEES--------------------------CTTCCEEEEEEECTTCCEEEEEECCSTTCEEEE
T ss_pred eCCCeEEECCCCCEEEEEEEe--------------------------cCCCCcEEEEeECCCCCccccceeccccccccc
Confidence 445667789999999999877 222234555541 1111 0
Q ss_pred --cCCceEEeecCCeeEEEeccCCCCCCeeEEEEEEc
Q psy7039 183 --IGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLEN 217 (516)
Q Consensus 183 --~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~ 217 (516)
...++.... .....|.|..++.+|++.|.|.+..
T Consensus 60 ~~~~~~f~~~~-~~~~~l~l~~~~~~dsa~Y~Ca~~~ 95 (112)
T d1fo0b_ 60 SLPGADYLATR-VTDTELRLQVANMSQGRTLYCTCSA 95 (112)
T ss_dssp EETTEEEEEEE-EETTEEEEEEESCCSCEEEEEEEES
T ss_pred ccccccccccc-ccccEEEEecCCccCCccEEEEEec
Confidence 012333221 2235788888899999999998653
|
| >d1qnzh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=96.09 E-value=0.0064 Score=46.02 Aligned_cols=80 Identities=18% Similarity=0.273 Sum_probs=48.6
Q ss_pred ceEEecCCeEEEEEeeeeccccccCcccccccc-ccCccceeecCcCceeeEEe---e-C-Ceee-c--cCCceEEeec-
Q psy7039 123 DVKIKAGQSFSFDVKEFRELSYTKSPLRALGVR-ANSTKGWVKLSEPFLNHGWS---I-N-GQVC-Q--IGGRADVQTT- 192 (516)
Q Consensus 123 ~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~p~~~i~W~---~-~-~~~~-~--~~~~~~~~~~- 192 (516)
...+++|++++|.|.+. |.. ....+.|+.. .|--.+.|. . + +... . ...|+.+..+
T Consensus 9 ~~~~kpG~Sv~LsC~~S-------------G~s~~~y~~~WyRQ-~PGkgle~l~~i~~~~~~~~y~~~~~gR~tis~d~ 74 (119)
T d1qnzh_ 9 AELVKPGASVKMSCKAS-------------GYTFTTYPIEWMKQ-NHGKSLEWIGNFHPYSDDTNYNEKFKGKAKLTVEK 74 (119)
T ss_dssp CCEECTTEEEEEEEEEE-------------TCCSSSSCEEEEEE-ETTSCCEEEEEEETTTTEECCCTTTTTTEEEEEET
T ss_pred CceECCCCCEEEEEEEe-------------ccCCCCCCcceeee-cCCCcceEeeccCCcccccchhhhhcccceeeccc
Confidence 34678899999999987 111 2334667764 222222222 2 1 2111 1 1246666543
Q ss_pred -CCeeEEEeccCCCCCCeeEEEEEE
Q psy7039 193 -KSETVLDIPFCSRSDTGHYSLTLE 216 (516)
Q Consensus 193 -~~~~~l~i~~~~~~d~g~Y~c~~~ 216 (516)
.....|.|.+++.+|++.|.|...
T Consensus 75 s~~~~~L~i~~L~~eDsAvYYCA~~ 99 (119)
T d1qnzh_ 75 SSSTVYLEFSRLTSDDSAVYYCAIH 99 (119)
T ss_dssp TTTEEEEEEEEECGGGCEEEEEEEC
T ss_pred ccceeeeeecccCccceeEEEEEEe
Confidence 334579999999999999999643
|
| >d2ck0h1 b.1.1.1 (H:1-106) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]
Probab=96.01 E-value=0.011 Score=43.64 Aligned_cols=83 Identities=16% Similarity=0.167 Sum_probs=50.8
Q ss_pred ccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEee---C----Ce-eecc--CCceEEe
Q psy7039 121 LNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSI---N----GQ-VCQI--GGRADVQ 190 (516)
Q Consensus 121 ~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~---~----~~-~~~~--~~~~~~~ 190 (516)
.....++.|++++|.|.+++ |+ -...-+.|+.. .|--.+.|.- . +. .... ..|+.+.
T Consensus 7 SG~~~vkPG~Sl~LsC~~SG---~t---------~~~~~~~WvRQ-~PGkglEw~g~i~~~~~~~~~~ya~~~kgR~tiS 73 (109)
T d2ck0h1 7 SGGGLVQPRGSLKLSCAASG---FT---------FNTDAMNWVRQ-APGKGLEWVARIRSKGFNFATYYADSVRDRFTIS 73 (109)
T ss_dssp ECCEEECTTCCEEEEEEEES---SC---------GGGSCEEEEEE-CTTSCEEEEEEECCGGGTTCEEECTTTTTTEEEE
T ss_pred ECCCeECCCCCeEEEEEECC---Cc---------cccccccccee-CCCcceecccccccccccccceeccccccCceec
Confidence 34467889999999999882 11 11235566663 3333344421 1 11 1111 2466665
Q ss_pred ec--CCeeEEEeccCCCCCCeeEEEEEE
Q psy7039 191 TT--KSETVLDIPFCSRSDTGHYSLTLE 216 (516)
Q Consensus 191 ~~--~~~~~l~i~~~~~~d~g~Y~c~~~ 216 (516)
.+ .....|.|.+++.+|++.|.|.-.
T Consensus 74 ~D~s~~t~~L~i~sL~~eDTAvYYCAr~ 101 (109)
T d2ck0h1 74 RDDSQSMLYLQMNNLKTEDTGIYYCVRG 101 (109)
T ss_dssp EETTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred cccccceeEecccCCCHhHCEEEEEEEc
Confidence 44 334679999999999999999743
|
| >d1ymmd1 b.1.1.1 (D:9-104) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), alpha-chain [TaxId: 9606]
Probab=95.97 E-value=0.00023 Score=52.69 Aligned_cols=71 Identities=20% Similarity=0.368 Sum_probs=47.0
Q ss_pred EEEEcCCeEEEEEEEeeecCCceEEEEC--Ceec------------CCCCceEEE--EcCCeEEEEEcCceecCCceEEE
Q psy7039 365 MTVLAGEEFTITVPFSGRPKPTPIWTVN--GDEV------------SPDGRIKFE--TSENQTIYRNKSAKRATDSGSYT 428 (516)
Q Consensus 365 ~~v~~g~~~~l~C~~~g~p~~~i~W~~~--~~~l------------~~~~~~~~~--~~~~~~~l~i~~~~~~~~~g~y~ 428 (516)
+.|.+|+.++|.|..... ...+.|++. +..+ ....++... .......|.|.++.+ .|+|.|.
T Consensus 3 lsV~eG~~vtL~C~~~~~-~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~-~Dsa~Yy 80 (96)
T d1ymmd1 3 LSIQEGENATMNCSYKTS-INNLQWYRQNSGRGLVHLILIRSNEREKHSGRLRVTLDTSKKSSSLLITASRA-ADTASYF 80 (96)
T ss_dssp CCCSSCCCCCBCCBCSSC-EEEEEEECCCSSCCCCCCCEEESSSCCCCSSSCCBCCBGGGTBCCBCCSSCCS-TTCSCCE
T ss_pred ceECCCCCEEEEEEEeCC-cccEEEEEECCCCCccccccccceecccccccceeeccCcceecccCcCCCCc-ccCEEEe
Confidence 346789999999987542 236889862 1111 112333332 233446799999999 9999999
Q ss_pred EEEEcCCCc
Q psy7039 429 IQLVNTVGS 437 (516)
Q Consensus 429 c~a~n~~G~ 437 (516)
|.+....|.
T Consensus 81 CA~~~~~g~ 89 (96)
T d1ymmd1 81 CATDTTSGT 89 (96)
T ss_dssp EEEEETTSC
T ss_pred EeEecCCCC
Confidence 998766554
|
| >d1um5h1 b.1.1.1 (H:3-119) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=95.94 E-value=0.011 Score=44.30 Aligned_cols=83 Identities=20% Similarity=0.313 Sum_probs=50.3
Q ss_pred ccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEe---e--CCeee-c--cCCceEEeec
Q psy7039 121 LNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWS---I--NGQVC-Q--IGGRADVQTT 192 (516)
Q Consensus 121 ~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~---~--~~~~~-~--~~~~~~~~~~ 192 (516)
.....++.|++++|.|.+.+ | --.+..+.|+++ .|---+.|. . .+... . ...|+.+..+
T Consensus 6 sg~~~~kPG~sl~LsC~~SG---~---------~~~~y~~~WvRQ-~pGkglewl~~i~~~~~~~~y~~~~kgRftiS~D 72 (117)
T d1um5h1 6 SGPVLVKPGGSVKMSCKASE---Y---------TLTSYLFQWVKQ-KSGQGLEWIGYIYPYNGGTRYNEKFRGKATLTSD 72 (117)
T ss_dssp CCCEEECTTCCEEEEEEESS---C---------CCSCCEEEEEEE-CTTSCEEEEEEEETTTTEEEECGGGTTCEEEEEE
T ss_pred ECCceECCCCCEEEEEEEcc---c---------cCCCCcCcccee-CCCccceeeeecCCccCccccccceeeeEEEEec
Confidence 34467889999999999881 1 012345566664 233334442 1 11111 1 1256666543
Q ss_pred --CCeeEEEeccCCCCCCeeEEEEEE
Q psy7039 193 --KSETVLDIPFCSRSDTGHYSLTLE 216 (516)
Q Consensus 193 --~~~~~l~i~~~~~~d~g~Y~c~~~ 216 (516)
.....|.|.+++.+|++.|.|...
T Consensus 73 ~s~~t~~L~m~sL~~eDtAvYYCAr~ 98 (117)
T d1um5h1 73 KSSNTAYLELSSLTSEDSAVYYCARS 98 (117)
T ss_dssp TTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred cCceeEeecccccCCCcceEEEEeec
Confidence 334579999999999999999643
|
| >d1yjdc1 b.1.1.1 (C:1-118) CD28 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD28 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.94 E-value=0.023 Score=43.16 Aligned_cols=27 Identities=11% Similarity=0.028 Sum_probs=22.5
Q ss_pred ecCCeeEEEeccCCCCCCeeEEEEEEc
Q psy7039 191 TTKSETVLDIPFCSRSDTGHYSLTLEN 217 (516)
Q Consensus 191 ~~~~~~~l~i~~~~~~d~g~Y~c~~~~ 217 (516)
......+|.|.+++.+|+|.|.|.++.
T Consensus 72 ~~~~~~~L~I~~l~~~DsavYyCa~~~ 98 (118)
T d1yjdc1 72 LGNESVTFYLQNLYVNQTDIYFCKIEV 98 (118)
T ss_dssp ECSSEEEEEEESCCGGGCEEEEEEEEE
T ss_pred CCCCeEEEEECCCCcccCeEEEEEEec
Confidence 345566899999999999999998754
|
| >d1fnga1 b.1.1.2 (A:82-182) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-E group [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Class II MHC alpha chain, C-terminal domain species: Mouse (Mus musculus), I-E group [TaxId: 10090]
Probab=95.94 E-value=0.017 Score=42.45 Aligned_cols=33 Identities=21% Similarity=0.255 Sum_probs=24.7
Q ss_pred ecCCeEEEEEeeeeccccccCccccccccccCccceeecCcC-ceeeEEeeCCeeeccC
Q psy7039 127 KAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEP-FLNHGWSINGQVCQIG 184 (516)
Q Consensus 127 ~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~i~W~~~~~~~~~~ 184 (516)
..|+..+|.|.+.| ..| ...++|.+||..+..+
T Consensus 17 ~~~~~~tL~C~v~g-------------------------F~P~~i~v~W~~ng~~~~~~ 50 (101)
T d1fnga1 17 NLGEPNILICFIDK-------------------------FSPPVVNVTWLRNGRPVTEG 50 (101)
T ss_dssp CTTSCEEEEEEEEE-------------------------EBSSCCEEEEEETTEEECSS
T ss_pred cCCCCEEEEEEEEe-------------------------EECCCCEEEEEECCeecCCC
Confidence 45677889999992 233 5689999999887643
|
| >d1tjgh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Engineered (including hybrid species)
Probab=95.93 E-value=0.0082 Score=46.26 Aligned_cols=81 Identities=17% Similarity=0.279 Sum_probs=47.8
Q ss_pred ceEEecCCeEEEEEeeeeccccccCccccccccccC---ccceeecCcCceeeEE---eeC-Cee-ec--cCCceEEeec
Q psy7039 123 DVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANS---TKGWVKLSEPFLNHGW---SIN-GQV-CQ--IGGRADVQTT 192 (516)
Q Consensus 123 ~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~p~~~i~W---~~~-~~~-~~--~~~~~~~~~~ 192 (516)
...+++|++++|.|.+. |....+ -+.|++. .|.-...| ... +.. .. -..|+.+..+
T Consensus 9 ~~~vkpg~Sl~LsC~~S-------------G~~~s~~~~~~~WyRQ-~pG~~le~l~~i~~~~~~~y~~~~k~Rftis~d 74 (132)
T d1tjgh1 9 PPLVKPTQTLTLTCSFS-------------GFSLSDFGVGVGWIRQ-PPGKALEWLAIIYSDDDKRYSPSLNTRLTITKD 74 (132)
T ss_dssp CSEECTTCCEEEEEEEE-------------SSCTTSTTCEEEEEEE-CTTSCCEEEEEEETTSCEEECGGGTTTEEEEEE
T ss_pred CeeECCCCCeEEEEEEe-------------CCCcCCCCCceEEEEE-CCCcccEEEEEecCCCccEeeeeeeecceeccc
Confidence 35678899999999987 222111 2456653 22222222 221 111 11 1356666543
Q ss_pred C--CeeEEEeccCCCCCCeeEEEEEEc
Q psy7039 193 K--SETVLDIPFCSRSDTGHYSLTLEN 217 (516)
Q Consensus 193 ~--~~~~l~i~~~~~~d~g~Y~c~~~~ 217 (516)
. ....|.|.+++.+|++.|.|....
T Consensus 75 ~s~~~~~L~i~~l~~eDtAvYYCAr~~ 101 (132)
T d1tjgh1 75 TSKNQVVLVMTRVSPVDTATYFCAHRR 101 (132)
T ss_dssp TTTTEEEEEECSCCGGGCEEEEEEEEC
T ss_pred ccccEEEcccccCCcccceEEEEEEec
Confidence 3 345799999999999999998653
|
| >d1erna2 b.1.2.1 (A:117-221) Erythropoietin (EPO) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Erythropoietin (EPO) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.93 E-value=0.0033 Score=46.88 Aligned_cols=47 Identities=17% Similarity=0.173 Sum_probs=36.7
Q ss_pred CCCCCCCCccccccc-CCeEEEEeeCCCCCCCCCcceEEEEEEecCCCc
Q psy7039 449 KPSPPQGPLDVSDIT-PESCSLSWKPPLDDGGSPITNYVVEKYESATGV 496 (516)
Q Consensus 449 ~p~~P~~~l~~~~~~-~~~~~l~W~~p~~~~~~~i~~Y~v~~~~~~~~~ 496 (516)
+|+|| .++.+.... ...+.|+|.+|..+.+..+..|.|+|+..+...
T Consensus 4 k~dPP-~nl~v~~~~~~~~l~v~W~~P~~~~~~~~~~Y~v~y~~~~~~~ 51 (105)
T d1erna2 4 LLDAP-VGLVARLADESGHVVLRWLPPPETPMTSHIRYEVDVSAGNGAG 51 (105)
T ss_dssp CCCCC-EEEEEEECCC-CCEEEEEECSSSCSCGGGEEEEEEEEEC-CCC
T ss_pred ccCCC-CCCEEEEecCCCcEEEEeeeccccccceEEEEEEEEecCCCCC
Confidence 57888 788877654 457999999987777888889999999886655
|
| >d1u9ka_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: TREM-1 (triggering receptor expressed on myeloid cells 1) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.92 E-value=0.017 Score=43.17 Aligned_cols=71 Identities=24% Similarity=0.422 Sum_probs=49.4
Q ss_pred cEEEEcCCeEEEEEEEeee--cCCceEEEEC--Cee----c-C--C--------CCceEEEE--cCCeEEEEEcCceecC
Q psy7039 364 DMTVLAGEEFTITVPFSGR--PKPTPIWTVN--GDE----V-S--P--------DGRIKFET--SENQTIYRNKSAKRAT 422 (516)
Q Consensus 364 ~~~v~~g~~~~l~C~~~g~--p~~~i~W~~~--~~~----l-~--~--------~~~~~~~~--~~~~~~l~i~~~~~~~ 422 (516)
...+.+|+.++|.|...+. ......|.+. +.. + . . .+++.+.. ..+...|+|.+|.. +
T Consensus 4 ~~~~~eG~svtl~C~ys~~~~~~~~~~W~rq~pg~~~~~li~~~~~~~~~~~~~~gR~sis~d~~~~~~~lti~~L~~-e 82 (110)
T d1u9ka_ 4 RYDLVEGQTLTVKCPFNIMKYANSQKAWQRLPDGKEPLTLVVTQRPFTRPSEVHMGKFTLKHDPSEAMLQVQMTDLQV-T 82 (110)
T ss_dssp EEEECTTCCEEEEEECCHHHHTTSEEEEEECCTTSCCEEEEECCSSTTSCEEEEETTEEEEEEGGGTEEEEEECSCCG-G
T ss_pred CCcCCCCCCEEEEEEECCCCccCCcEEEEEECCCCCEEEEEecCCCceeechhhCcEEEEEEECCCCEEEEEECcccc-C
Confidence 4568899999999998754 3346789873 211 1 0 0 13555543 34557899999999 9
Q ss_pred CceEEEEEEEcCC
Q psy7039 423 DSGSYTIQLVNTV 435 (516)
Q Consensus 423 ~~g~y~c~a~n~~ 435 (516)
|+|.|.|......
T Consensus 83 Dsa~YyCa~~~~~ 95 (110)
T d1u9ka_ 83 DSGLYRCVIYHPP 95 (110)
T ss_dssp GCEEEEEEEECTT
T ss_pred CCEEEEEEEeCCC
Confidence 9999999876543
|
| >d1r0ah1 b.1.1.1 (H:1-123) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]
Probab=95.91 E-value=0.0061 Score=46.32 Aligned_cols=79 Identities=14% Similarity=0.202 Sum_probs=45.9
Q ss_pred ceEEecCCeEEEEEeeeeccccccCcccccccccc---CccceeecCcCceeeEEe---e-CCe-eecc--CCceEEeec
Q psy7039 123 DVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRAN---STKGWVKLSEPFLNHGWS---I-NGQ-VCQI--GGRADVQTT 192 (516)
Q Consensus 123 ~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~p~~~i~W~---~-~~~-~~~~--~~~~~~~~~ 192 (516)
...+++|++++|.|.+. |.-.. .-+.|++. .|.-.+.|. . ++. .... ..|+.+..+
T Consensus 9 ~~~vkpg~sv~LsC~~S-------------G~s~s~~~y~~~W~RQ-~pGkgle~i~~i~~~~~~~y~~~~k~Rftis~D 74 (123)
T d1r0ah1 9 PGIVQPSQPFRLTCTFS-------------GFSLSTSGIGVTWIRQ-PSGKGLEWLATIWWDDDNRYNPSLKSRLTVSKD 74 (123)
T ss_dssp CSEECTTCCEEEEEEEE-------------SSCTTSTTEEEEEEEE-ETTSCCEEEEEEETTSCCEECTTTGGGEEEEEE
T ss_pred CceECCCCCeEEEEEEc-------------CCccCCCCCeeecccc-CCCcceEeeeeecCCccccccceeeEEEEcccc
Confidence 35678899999999987 11111 13446553 222223332 1 111 1111 146665543
Q ss_pred --CCeeEEEeccCCCCCCeeEEEEE
Q psy7039 193 --KSETVLDIPFCSRSDTGHYSLTL 215 (516)
Q Consensus 193 --~~~~~l~i~~~~~~d~g~Y~c~~ 215 (516)
.....|.|.+++.+|++.|.|..
T Consensus 75 ~s~~~~~L~i~sl~~eDsAvYyCAr 99 (123)
T d1r0ah1 75 TSNNQAFLNMMTVETADTAIYYCAQ 99 (123)
T ss_dssp GGGTEEEEEECSCCGGGCEEEEEEE
T ss_pred ccceeEEcceeecccccceEEeecc
Confidence 23457999999999999999974
|
| >d1kxvc_ b.1.1.1 (C:) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Camelid IG heavy chain variable domain, VHh species: Camel (Camelus dromedarius) [TaxId: 9838]
Probab=95.88 E-value=0.024 Score=42.60 Aligned_cols=70 Identities=19% Similarity=0.259 Sum_probs=0.0
Q ss_pred EEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcC--ceeeEEee--CCeeeccC----------------
Q psy7039 125 KIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEP--FLNHGWSI--NGQVCQIG---------------- 184 (516)
Q Consensus 125 ~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p--~~~i~W~~--~~~~~~~~---------------- 184 (516)
.++.|++++|.|.+. |.. .-.+.|++ +++.+.--
T Consensus 10 ~vkPg~sl~LsC~~S--------------------------G~~~s~y~~~W~RQ~pGkglewl~~i~~~g~~~y~~~~k 63 (119)
T d1kxvc_ 10 TVPAGGSLRLSCAAS--------------------------GNTLCTYDMSWYRRAPGKGRDFVSGIDNDGTTTYVDSVA 63 (119)
T ss_dssp EECTTCCEEEEEEEE--------------------------SCTTCCEEEEEEEECTTSCEEEEEEECTTCCEEECGGGB
T ss_pred eECCCCCeEEEEEEc--------------------------CCCccCCceeeeeeCCCCcceeeeecccccchhhhhhhh
Q ss_pred CceEEeec--CCeeEEEeccCCCCCCeeEEEEEEcCCC
Q psy7039 185 GRADVQTT--KSETVLDIPFCSRSDTGHYSLTLENNLG 220 (516)
Q Consensus 185 ~~~~~~~~--~~~~~l~i~~~~~~d~g~Y~c~~~~~~g 220 (516)
.|+.+..+ .....|.|.+++.+|++.|.|......+
T Consensus 64 gR~tiS~D~s~~~~~L~i~~L~~eDtA~YYCAr~~~~~ 101 (119)
T d1kxvc_ 64 GRFTISQGNAKNTAYLQMDSLKPDDTAMYYCKPSLRYG 101 (119)
T ss_dssp TTEEEEECSSTTEEEEEECSCCGGGCEEEEEEEEESSC
T ss_pred cceEEecccCCcceecccccCCcCCcceEeeeeccccC
|
| >d1vgeh1 b.1.1.1 (H:1-122) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 1 [TaxId: 9606]
Probab=95.82 E-value=0.02 Score=43.11 Aligned_cols=83 Identities=18% Similarity=0.256 Sum_probs=50.7
Q ss_pred ccceEEecCCeEEEEEeeeeccccccCcccccccc-ccCccceeecCcCceeeEEe---e-C-Ce-eec--cCCceEEee
Q psy7039 121 LNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVR-ANSTKGWVKLSEPFLNHGWS---I-N-GQ-VCQ--IGGRADVQT 191 (516)
Q Consensus 121 ~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~p~~~i~W~---~-~-~~-~~~--~~~~~~~~~ 191 (516)
.....++.|++++|.|.++ |.. ...-+.|++. .|--.+.|. . + +. ... -..|+.+..
T Consensus 8 sg~~~vkpg~sl~LsC~~S-------------G~~~~~y~~~WvRQ-~PGkglEwlg~i~~~~~~~~ya~s~kgR~tiS~ 73 (122)
T d1vgeh1 8 SGAEVKKPGASVKVSCKAS-------------GYSFTSYGLHWVRQ-APGQRLEWMGWISAGTGNTKYSQKFRGRVTFTR 73 (122)
T ss_dssp CCCEEECTTCCEEEEEEEC-------------SSCGGGSEEEEEEE-CTTSCEEEEEEEETTTCCEEECGGGTTTEEEEE
T ss_pred cCCcEECCCCCEEEEEEEc-------------CCCccCCCceeeEe-CCCCceeeeeeecCcccccccccceeEeeEEec
Confidence 3446689999999999998 211 2234566663 233334443 1 1 11 111 125666654
Q ss_pred cC--CeeEEEeccCCCCCCeeEEEEEEc
Q psy7039 192 TK--SETVLDIPFCSRSDTGHYSLTLEN 217 (516)
Q Consensus 192 ~~--~~~~l~i~~~~~~d~g~Y~c~~~~ 217 (516)
+. ....|.|.+++.+|++.|.|....
T Consensus 74 D~s~ntvyL~~~~L~~eDtA~YYCAr~~ 101 (122)
T d1vgeh1 74 DTSATTAYMGLSSLRPEDTAVYYCARDP 101 (122)
T ss_dssp ETTTTEEEEEECSCCGGGCEEEEEEEET
T ss_pred cCCcceeeecccccCCCcceEEEEeecC
Confidence 33 345789999999999999997643
|
| >d1indh1 b.1.1.1 (H:1-114) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]
Probab=95.81 E-value=0.013 Score=43.59 Aligned_cols=80 Identities=20% Similarity=0.316 Sum_probs=50.1
Q ss_pred ceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEee----CC-e-eecc--CCceEEeecC-
Q psy7039 123 DVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSI----NG-Q-VCQI--GGRADVQTTK- 193 (516)
Q Consensus 123 ~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~----~~-~-~~~~--~~~~~~~~~~- 193 (516)
.-.++.|++++|.|.+.+ |. -....+.|+.. .|---+.|.- ++ . .... ..|+.+..+.
T Consensus 9 ~~~vkpG~sl~LsC~~SG---~~---------~s~~~~~WvRQ-~PGkglEwv~~i~~~~~~~~y~~s~kgRftiSrD~s 75 (114)
T d1indh1 9 GDSVKPGGSLKLSCAASG---FT---------LSGETMSWVRQ-TPEKRLEWVATTLSGGGFTFYSASVKGRFTISRDNA 75 (114)
T ss_dssp CCEECTTCCEEEEEEEES---SC---------GGGSCEEEEEE-CTTCCEEEEEEECSTTCCEEECTTTTTTEEEEEETT
T ss_pred CceECCCCCEEEEEEECc---cC---------ccCCceecccc-CCCCccEEeeecccccchhhhhhhheeeEEEeccCc
Confidence 356789999999999882 11 12345667774 3433455531 11 1 1111 2566665433
Q ss_pred -CeeEEEeccCCCCCCeeEEEEE
Q psy7039 194 -SETVLDIPFCSRSDTGHYSLTL 215 (516)
Q Consensus 194 -~~~~l~i~~~~~~d~g~Y~c~~ 215 (516)
....|.|.+++.+|++.|.|..
T Consensus 76 ~nt~~L~~~~L~~eDtAvYYCA~ 98 (114)
T d1indh1 76 QNNLYLQLNSLRSEDTALYFCAS 98 (114)
T ss_dssp TTEEEEEECSCCGGGCEEEEEEC
T ss_pred cceeeeeeeeeccCcccEEEECC
Confidence 3457999999999999999963
|
| >d1jpth1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Engineered (including hybrid species)
Probab=95.80 E-value=0.0096 Score=44.51 Aligned_cols=82 Identities=16% Similarity=0.242 Sum_probs=50.3
Q ss_pred cceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEe---e-CC-e-eecc--CCceEEeec-
Q psy7039 122 NDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWS---I-NG-Q-VCQI--GGRADVQTT- 192 (516)
Q Consensus 122 ~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~---~-~~-~-~~~~--~~~~~~~~~- 192 (516)
....++.|+++.|.|.+++ |+ -....+.|++. .|---+.|. . ++ . .... ..|+.+..+
T Consensus 8 G~~~vkpg~sl~LsC~~SG---~~---------~~~y~~~WvRQ-~PGkglewvg~i~~~~~~~~ya~s~kgR~tiSrD~ 74 (117)
T d1jpth1 8 GGGLVQPGGSLRLSCAASG---FN---------IKEYYMHWVRQ-APGKGLEWVGLIDPEQGNTIYDPKFQDRATISADN 74 (117)
T ss_dssp CCEEECTTCCEEEEEEEES---SC---------GGGSEEEEEEE-CTTSCEEEEEEECTTTCCEEECTTTTTTEEEEEEG
T ss_pred CCceECCCCCEEEEEEEcC---CC---------CcCCceEccee-CCCcceEeeeecccccccccccccceeeEEEEecc
Confidence 4467889999999999982 10 12345666663 233334443 1 11 1 1111 256666543
Q ss_pred -CCeeEEEeccCCCCCCeeEEEEEE
Q psy7039 193 -KSETVLDIPFCSRSDTGHYSLTLE 216 (516)
Q Consensus 193 -~~~~~l~i~~~~~~d~g~Y~c~~~ 216 (516)
.....|.+.+++.+|++.|.|...
T Consensus 75 s~nt~yL~m~~L~~eDTAvYYCAr~ 99 (117)
T d1jpth1 75 SKNTAYLQMNSLRAEDTAVYYCARD 99 (117)
T ss_dssp GGTEEEEEECSCCGGGCEEEEEEEE
T ss_pred ccceEEecccccCCCCceEEEEeec
Confidence 334578999999999999999653
|
| >d1k5nb_ b.1.1.2 (B:) beta2-microglobulin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: beta2-microglobulin species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.80 E-value=0.018 Score=42.31 Aligned_cols=66 Identities=11% Similarity=0.023 Sum_probs=38.2
Q ss_pred ecCCeEEEEEeeeeccccccCccccccccccCccceeecCc--CceeeEEeeCCeeeccCCce--EEeecCCeeEEEecc
Q psy7039 127 KAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSE--PFLNHGWSINGQVCQIGGRA--DVQTTKSETVLDIPF 202 (516)
Q Consensus 127 ~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--p~~~i~W~~~~~~~~~~~~~--~~~~~~~~~~l~i~~ 202 (516)
..|+.+.|.|.+. |. +...++|.+|+..+...... ....++.......-.
T Consensus 17 ~~~~~~tL~C~~~--------------------------gFyP~~i~v~W~~ng~~v~~~~~~~~~~~~dgty~~~s~l~ 70 (100)
T d1k5nb_ 17 ENGKSNFLNCYVS--------------------------GFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYLLYYTE 70 (100)
T ss_dssp CTTSCEEEEEEEE--------------------------EEBSSCCEEEEEETTEECTTCEECCCEECTTSCEEEEEEEE
T ss_pred cCCCCEEEEEEEC--------------------------ccCCCCcEEEEEECCEecCCccccceecCCCCcEEEEEEeE
Confidence 4678889999999 43 35689999999888532211 111122222222223
Q ss_pred CCCCCCeeEEEEEEcC
Q psy7039 203 CSRSDTGHYSLTLENN 218 (516)
Q Consensus 203 ~~~~d~g~Y~c~~~~~ 218 (516)
+..++.+.|+|.+...
T Consensus 71 v~~~~~~~ytC~V~H~ 86 (100)
T d1k5nb_ 71 FTPTEKDEYACRVNHV 86 (100)
T ss_dssp ECCCSSCCEEEEEECT
T ss_pred ECCCCCCEEEEEEEeC
Confidence 3344555677776653
|
| >d1j05b_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=95.80 E-value=0.0089 Score=45.25 Aligned_cols=82 Identities=18% Similarity=0.271 Sum_probs=49.5
Q ss_pred cceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEe---e--CCeeec---cCCceEEeec-
Q psy7039 122 NDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWS---I--NGQVCQ---IGGRADVQTT- 192 (516)
Q Consensus 122 ~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~---~--~~~~~~---~~~~~~~~~~- 192 (516)
....++.|++++|.|.+.+ | .-.+.-+.|++. .|--.+.|. . ++.... -..|+.+..+
T Consensus 8 g~~~~kpG~sv~LsC~~SG---~---------~~s~~~~~W~RQ-~PGkgle~l~~i~~~~~~~~y~~~~kgR~tis~D~ 74 (121)
T d1j05b_ 8 GAELVEPGASVKLSCTASG---F---------NIKDTYMHWVKQ-RPEQGLEWIGRIDPANGNSKYVPKFQGKATITADT 74 (121)
T ss_dssp CCEEECTTCCEEEEEEEES---S---------CGGGSEEEEEEE-CTTCCCEEEEEEETTTTEEEECGGGTTTEEEEEEG
T ss_pred CCceECCCCCEEEEEEEec---C---------CCCCCCcceeeE-CCCCccccccccCCcCCccccchhhccceEEEeec
Confidence 3456889999999999871 1 012234567664 233233332 2 121111 1246666543
Q ss_pred -CCeeEEEeccCCCCCCeeEEEEEE
Q psy7039 193 -KSETVLDIPFCSRSDTGHYSLTLE 216 (516)
Q Consensus 193 -~~~~~l~i~~~~~~d~g~Y~c~~~ 216 (516)
.....|.|.+++.+|++.|.|...
T Consensus 75 s~~t~~L~i~~L~~eDtAvYYCAr~ 99 (121)
T d1j05b_ 75 SSNTAYLQLTSLTSEDTAVYYCAPF 99 (121)
T ss_dssp GGTEEEEEECSCCGGGCEEEEEEEE
T ss_pred CCceeeecccccCcCcceEEEeEee
Confidence 334579999999999999999753
|
| >d1nkra1 b.1.1.4 (A:6-101) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Killer cell inhibitory receptor species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]
Probab=95.78 E-value=0.01 Score=43.25 Aligned_cols=70 Identities=10% Similarity=-0.066 Sum_probs=45.6
Q ss_pred ccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCce-EEEEcCCeEEEEEcCceecCCceEEEEEEEcC
Q psy7039 363 RDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRI-KFETSENQTIYRNKSAKRATDSGSYTIQLVNT 434 (516)
Q Consensus 363 ~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~-~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~ 434 (516)
....+..|.+++|.|.... ....+.++++|......... .....+....+.|..+.. .|+|.|+|.-...
T Consensus 9 P~~~V~~G~~VTl~C~~~~-~~~~f~L~keg~~~~~~~~~~~~~~~~~~a~F~l~~v~~-~~~G~Y~C~y~~~ 79 (96)
T d1nkra1 9 PGPLVKSEETVILQCWSDV-MFEHFLLHREGMFNDTLRLIGEHHDGVSKANFSISRMTQ-DLAGTYRCYGSVT 79 (96)
T ss_dssp SCSEEETTCCEEEEEEESS-CCSEEEEEEESSSCEEEEEECEEETTEEEEEEEESSCCG-GGCEEEEEEEEBT
T ss_pred CCCccCCCCcEEEEECCCC-CCCEEEEEECCCcCCceeeeeeecCCceEEEEEEcccCc-ccCeEEEEEEEcC
Confidence 4457899999999998642 23367788877432110000 111122345799999999 9999999987644
|
| >d1mfah1 b.1.1.1 (H:251-367) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=95.75 E-value=0.022 Score=42.64 Aligned_cols=82 Identities=18% Similarity=0.267 Sum_probs=50.1
Q ss_pred ccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEee-----CCeee-cc--CCceEEeec
Q psy7039 121 LNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSI-----NGQVC-QI--GGRADVQTT 192 (516)
Q Consensus 121 ~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~-----~~~~~-~~--~~~~~~~~~ 192 (516)
+....++.|+++.|.|.+++ |+ -.+.-+.|+.. .|---+.|.- ++... .. ..|+.+..+
T Consensus 7 sg~~~~kPG~sl~LsC~~SG---~s---------~s~~~~~WvRQ-~PGkglEwl~~i~~~~~~~~ya~~~~~R~t~s~D 73 (117)
T d1mfah1 7 SGTVVARPGASVKMSCKASG---YT---------FTNYWMHWIKQ-RPGQGLEWIGAIYPGNSATFYNHKFRAKTKLTAV 73 (117)
T ss_dssp CCCEEECTTCCEEEEEEEES---SC---------GGGSEEEEEEE-ETTTEEEEEEEEETTTTEEEECTTTTTTEEEEEE
T ss_pred ECCceECCCCCEEEEEEEcc---cC---------CCCCceEeeee-CCCCcceeeEccCcccccccccccceeeEEEEcc
Confidence 34466789999999999881 10 12334566664 3333344431 12111 11 245665543
Q ss_pred --CCeeEEEeccCCCCCCeeEEEEE
Q psy7039 193 --KSETVLDIPFCSRSDTGHYSLTL 215 (516)
Q Consensus 193 --~~~~~l~i~~~~~~d~g~Y~c~~ 215 (516)
.....|.|.+++.+|++.|.|..
T Consensus 74 ~s~~~~~L~i~~L~~eDtAvYYCAr 98 (117)
T d1mfah1 74 TSTTTAYMELSSLTSEDSAVYYCTR 98 (117)
T ss_dssp TTTTEEEEEECSCCGGGCEEEEEEE
T ss_pred cCccEeEeeecccCCCcceEEEEec
Confidence 33457999999999999999964
|
| >d1lk2b_ b.1.1.2 (B:) beta2-microglobulin {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: beta2-microglobulin species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.74 E-value=0.023 Score=41.64 Aligned_cols=75 Identities=12% Similarity=0.081 Sum_probs=0.0
Q ss_pred EecCCeEEEEEeeeeccccccCccccccccccCccceeecCc--CceeeEEeeCCeeeccCCceEEe--ecCCeeEEEec
Q psy7039 126 IKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSE--PFLNHGWSINGQVCQIGGRADVQ--TTKSETVLDIP 201 (516)
Q Consensus 126 v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--p~~~i~W~~~~~~~~~~~~~~~~--~~~~~~~l~i~ 201 (516)
...|+.++|.|.+. |. +...++|.+++..+......... .++.......-
T Consensus 15 ~~~~~~~tL~C~v~--------------------------gf~P~~i~V~W~~~g~~~~~~~~~~~~~~~dgtf~~~s~l 68 (99)
T d1lk2b_ 15 PENGKPNILNCYVT--------------------------QFHPPHIEIQMLKNGKKIPKVEMSDMSFSKDWSFYILAHT 68 (99)
T ss_dssp CCTTSCEEEEEEEE--------------------------EEBSSCCEEEEEETTEECTTCEEEEEEECTTCCEEEEEEE
T ss_pred ccCCCcEEEEEEEE--------------------------EEECCCcEEEEeeCCeecCCcEECceeECCCCCEEEEEEe
Q ss_pred cCCCCCCeeEEEEEEcCCCceEEEE
Q psy7039 202 FCSRSDTGHYSLTLENNLGTATASA 226 (516)
Q Consensus 202 ~~~~~d~g~Y~c~~~~~~g~~~~~~ 226 (516)
.+..++.+.|+|.+....-......
T Consensus 69 ~v~~~~~~~ytC~V~H~sl~~p~~~ 93 (99)
T d1lk2b_ 69 EFTPTETDTYACRVKHDSMAEPKTV 93 (99)
T ss_dssp EECCCSSCCEEEEEECTTSSSCEEE
T ss_pred EecCcCCCEEEEEEEeCCCCCCeEE
|
| >d1bqua2 b.1.2.1 (A:100-214) Cytokine receptor gp130 cytokine-binding domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Cytokine receptor gp130 cytokine-binding domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.73 E-value=0.003 Score=47.97 Aligned_cols=46 Identities=24% Similarity=0.391 Sum_probs=34.3
Q ss_pred CCCCCCCCcccc--cccCCeEEEEeeCCCCCCCCCcceEEEEEEecCCCc
Q psy7039 449 KPSPPQGPLDVS--DITPESCSLSWKPPLDDGGSPITNYVVEKYESATGV 496 (516)
Q Consensus 449 ~p~~P~~~l~~~--~~~~~~~~l~W~~p~~~~~~~i~~Y~v~~~~~~~~~ 496 (516)
+|.|| .++.+. ..+.+++.|+|++|. +.++.+.+|.|+|+......
T Consensus 4 kP~pP-~~~~v~~~~~~~~si~v~W~~p~-~~~~~~~~Y~v~y~~~~~~~ 51 (115)
T d1bqua2 4 KPNPP-HNLSVINSEELSSILKLTWTNPS-IKSVIILKYNIQYRTKDAST 51 (115)
T ss_dssp ECCCC-EEEEEECC--CCSCEEEEEECCG-GGGTSCEEEEEEEEETTCSS
T ss_pred ECCCC-CCCEEEEeccCCCEEEEEEeecc-ccccceeeeeeeeeeeeeee
Confidence 47777 666654 466789999999876 45678999999999876655
|
| >d1ncwh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]
Probab=95.72 E-value=0.015 Score=43.63 Aligned_cols=80 Identities=19% Similarity=0.233 Sum_probs=48.9
Q ss_pred cceEEecCCeEEEEEeeeeccccccCccccccccc--cCccceeecCcCceeeEEee----CCee-ecc--CCceEEeec
Q psy7039 122 NDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRA--NSTKGWVKLSEPFLNHGWSI----NGQV-CQI--GGRADVQTT 192 (516)
Q Consensus 122 ~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~p~~~i~W~~----~~~~-~~~--~~~~~~~~~ 192 (516)
....++.|+++.|.|.+. |... ++.+.|++. .|---+.|.- ++.. ... ..|+.+..+
T Consensus 8 G~~~vkPg~sl~LsC~~S-------------G~s~~s~y~~~WvRQ-~PGkglEwig~i~~~~~t~y~~s~kgR~TiS~D 73 (119)
T d1ncwh1 8 GPGLVKPSQSLSLTCTVT-------------GYSITSDFAWNWIRQ-FPGNKLEWMGYINYSGFTSHNPSLKSRISITRD 73 (119)
T ss_dssp SCSEECTTSCEEEEEEEE-------------SSCTTSSEEEEEEEE-ETTTEEEEEEEEETTSCEEECGGGTTTEEEEEE
T ss_pred CCcEECCCCCEEEEEEEc-------------cccccCCCccccceE-CCCcceeeeeeccccccchhchhccccceEecc
Confidence 345678899999999998 2222 234566663 2332333321 1111 111 246666543
Q ss_pred --CCeeEEEeccCCCCCCeeEEEEE
Q psy7039 193 --KSETVLDIPFCSRSDTGHYSLTL 215 (516)
Q Consensus 193 --~~~~~l~i~~~~~~d~g~Y~c~~ 215 (516)
.....|.|.+++.+|++.|.|..
T Consensus 74 ~s~nt~~L~~~sL~~eDTAvYYCAr 98 (119)
T d1ncwh1 74 TSKNQFFLQLNSVTTEDTATYYCAG 98 (119)
T ss_dssp TTTTEEEEEECSCCGGGCEEEEEEE
T ss_pred cccceeeccccccccCCceEEEEeE
Confidence 34467999999999999999964
|
| >d2fbjh1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]
Probab=95.69 E-value=0.029 Score=42.00 Aligned_cols=83 Identities=12% Similarity=0.186 Sum_probs=51.2
Q ss_pred cceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEe---e-CC-eee-c--cCCceEEeecC
Q psy7039 122 NDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWS---I-NG-QVC-Q--IGGRADVQTTK 193 (516)
Q Consensus 122 ~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~---~-~~-~~~-~--~~~~~~~~~~~ 193 (516)
....++.|+++.|.|.+++ | --.+..+.|+++ .|---+.|. . ++ ... . -..|+.+..+.
T Consensus 8 G~~~vkpg~sl~LsC~~SG---~---------~~s~y~~~WvRQ-~PGkglEwv~~i~~~~~~~~Y~~s~kgRftiSrD~ 74 (118)
T d2fbjh1 8 GGGLVQPGGSLKLSCAASG---F---------DFSKYWMSWVRQ-APGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDN 74 (118)
T ss_dssp CCEEECTTCCEEEEEEEES---S---------CGGGSCEEEEEE-CTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECS
T ss_pred CCceECCCCCEEEEEEECC---c---------cccCCceeeeee-cCCcceeeeeecCcccccccccccceeeEEEeecC
Confidence 3456789999999999982 1 012345567763 333344443 2 21 111 1 12566665433
Q ss_pred --CeeEEEeccCCCCCCeeEEEEEEc
Q psy7039 194 --SETVLDIPFCSRSDTGHYSLTLEN 217 (516)
Q Consensus 194 --~~~~l~i~~~~~~d~g~Y~c~~~~ 217 (516)
....|.|.+++.+|++.|.|....
T Consensus 75 s~nt~~L~~~sL~~eDtAvYYCAr~~ 100 (118)
T d2fbjh1 75 AKNSLYLQMSKVRSEDTALYYCARLH 100 (118)
T ss_dssp SSCEEEEEECSCCGGGCEEEEEEEEE
T ss_pred ccceeeccccccCCCcceEEEeeEec
Confidence 345789999999999999997544
|
| >d1yjdc1 b.1.1.1 (C:1-118) CD28 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD28 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.69 E-value=0.029 Score=42.57 Aligned_cols=69 Identities=7% Similarity=0.005 Sum_probs=43.9
Q ss_pred EEEEcCCeEEEEEEEeeecCC---ceEEEECCe-e---c------------CCCCce--EEEEcCCeEEEEEcCceecCC
Q psy7039 365 MTVLAGEEFTITVPFSGRPKP---TPIWTVNGD-E---V------------SPDGRI--KFETSENQTIYRNKSAKRATD 423 (516)
Q Consensus 365 ~~v~~g~~~~l~C~~~g~p~~---~i~W~~~~~-~---l------------~~~~~~--~~~~~~~~~~l~i~~~~~~~~ 423 (516)
..+..|+.++|.|...+.... .+.|++... . + ....++ ......+...|+|.++.. +|
T Consensus 10 ~~v~~g~svtL~C~~s~~~~~~~~~~w~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~-~D 88 (118)
T d1yjdc1 10 MLVAYDNAVNLSCKYSYNLFSREFRASLHKGLDSAVEVCVVYGNYSQQLQVYSKTGFNCDGKLGNESVTFYLQNLYV-NQ 88 (118)
T ss_dssp EEECBTTBEEEEEEESCCSSCSEEEEEEEESTTCCCEEEEEEEESSSCCEEECSSSCEEEEEECSSEEEEEEESCCG-GG
T ss_pred cEEeCCCCEEEEEEEecCCCCccEEEEEEECCCCccEEEEEEeCCCeEECCccCCcEEEEEECCCCeEEEEECCCCc-cc
Confidence 346789999999998654333 234544211 0 0 011223 333445667899999999 99
Q ss_pred ceEEEEEEEcC
Q psy7039 424 SGSYTIQLVNT 434 (516)
Q Consensus 424 ~g~y~c~a~n~ 434 (516)
++.|.|.+...
T Consensus 89 savYyCa~~~~ 99 (118)
T d1yjdc1 89 TDIYFCKIEVM 99 (118)
T ss_dssp CEEEEEEEEEE
T ss_pred CeEEEEEEecc
Confidence 99999987643
|
| >d1pg7x1 b.1.1.1 (X:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=95.68 E-value=0.03 Score=42.19 Aligned_cols=81 Identities=19% Similarity=0.297 Sum_probs=50.1
Q ss_pred ceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEe---e-C-Ceee-c--cCCceEEeec--
Q psy7039 123 DVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWS---I-N-GQVC-Q--IGGRADVQTT-- 192 (516)
Q Consensus 123 ~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~---~-~-~~~~-~--~~~~~~~~~~-- 192 (516)
...++.|++++|.|.+++ |. -.+..+.|++. .|--.+.|. . . +... . -..|+.+..+
T Consensus 9 ~~~vkpG~sl~LsC~~SG---~s---------~~~~~~~W~RQ-~PGk~lewl~~i~~~~~~~~y~~~~kgR~tis~d~s 75 (120)
T d1pg7x1 9 PELVKPGASVKISCKASG---YS---------FTGHLLNWVKQ-SHGKNLEWIGLVHPHNGAITYNQKFKDKATLTVDRS 75 (120)
T ss_dssp CEEECTTCCEEEEEEEES---SC---------GGGSEEEEEEE-CTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETT
T ss_pred CcEECCCCCEEEEEEEcc---cc---------CCCCCcceeee-cCCCceEEeeecCccccchhhhHHhhhcceeeeccC
Confidence 356789999999999871 10 12234667775 333334443 1 1 1111 1 1356666543
Q ss_pred CCeeEEEeccCCCCCCeeEEEEEE
Q psy7039 193 KSETVLDIPFCSRSDTGHYSLTLE 216 (516)
Q Consensus 193 ~~~~~l~i~~~~~~d~g~Y~c~~~ 216 (516)
.....|.|.+++.+|++.|.|...
T Consensus 76 ~n~v~L~i~~l~~eDtA~YYCAr~ 99 (120)
T d1pg7x1 76 STTAYIELVRLTSNDSAVYYCARE 99 (120)
T ss_dssp TTEEEEEECSCCGGGCEEEEEEEE
T ss_pred cceEEccccccCCCcceEEEeeec
Confidence 334579999999999999999854
|
| >d1ugna1 b.1.1.4 (A:2-97) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Ligand binding domain of lir-1 (ilt2) species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.65 E-value=0.0034 Score=46.02 Aligned_cols=68 Identities=10% Similarity=0.005 Sum_probs=44.0
Q ss_pred ccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEc
Q psy7039 363 RDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVN 433 (516)
Q Consensus 363 ~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n 433 (516)
....+..|++++|.|... .+...+..+++|......... ....++...+.|..+.. .|+|.|+|....
T Consensus 11 Ps~~V~~G~~VTL~C~~~-~~~~~f~L~keg~~~~~~~~~-~~~~~~~a~F~i~~v~~-~~~G~Y~C~y~~ 78 (96)
T d1ugna1 11 PGSVITQGSPVTLRCQGG-QETQEYRLYREKKTAPWITRI-PQELVKKGQFPIPSITW-EHTGRYRCYYGS 78 (96)
T ss_dssp SCSEEETTCCEEEEEECC-TTCCCEEEEESSSCCHHHHTS-CHHHHTTTEEEESSCCG-GGCEEEEEEEEE
T ss_pred CCCccCCCCcEEEEEeCC-CCCCEEEEEECCCCcccEEEc-cCCCCCEEEEEEEecCH-HHCCeEEEEEeC
Confidence 345688999999999863 233467777777431100000 00112335799999999 999999998654
|
| >d2cdeb1 b.1.1.1 (B:5-116) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=95.65 E-value=0.0057 Score=46.22 Aligned_cols=73 Identities=12% Similarity=0.188 Sum_probs=47.3
Q ss_pred cccEEEEcCCeEEEEEEEeeecCCceEEEECCe--ec---------------CCCCceEEE-EcCCeEEEEEcCceecCC
Q psy7039 362 IRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGD--EV---------------SPDGRIKFE-TSENQTIYRNKSAKRATD 423 (516)
Q Consensus 362 ~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~--~l---------------~~~~~~~~~-~~~~~~~l~i~~~~~~~~ 423 (516)
+..+.+.+|+.++|.|..... ...+.|++... .+ .....+... .......|.|.++.+ +|
T Consensus 5 P~~~~~~~G~svtL~C~~~~~-~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~-~D 82 (112)
T d2cdeb1 5 PRYLVIGTGKKITLECSQTMG-HDKMYWYQQDPGMELHLIHYSYGVNSTEKGDLSSESTVSRIRTEHFPLTLESARP-SH 82 (112)
T ss_dssp CSEEEEETTCCBCCEEEETTC-CSEEEEEEECTTSCCEEEEEESSTTCCEESSSCCCCEECCSSSSBCCEEBSSCCT-TT
T ss_pred CCEEEECCCCCEEEEEEEeCC-cccEEEEEEcCCCCcEEeeeeeccCccccccccccceeecCCCCceEeeeccccc-cc
Confidence 455788999999999987532 34689987321 00 001112211 122345799999999 99
Q ss_pred ceEEEEEEEcCCC
Q psy7039 424 SGSYTIQLVNTVG 436 (516)
Q Consensus 424 ~g~y~c~a~n~~G 436 (516)
++.|.|.+....|
T Consensus 83 sa~YyCA~~~~~~ 95 (112)
T d2cdeb1 83 TSQYLCASSENIG 95 (112)
T ss_dssp CSEEEEEEECSSS
T ss_pred cccEEEEEecCCC
Confidence 9999998875543
|
| >d1nlbh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=95.65 E-value=0.019 Score=42.91 Aligned_cols=80 Identities=20% Similarity=0.257 Sum_probs=49.6
Q ss_pred cceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEe---e-CC-eee-c--cCCceEEeecC
Q psy7039 122 NDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWS---I-NG-QVC-Q--IGGRADVQTTK 193 (516)
Q Consensus 122 ~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~---~-~~-~~~-~--~~~~~~~~~~~ 193 (516)
....++.|+++.|.|.+.+ | --....+.|++. .|---+.|. . ++ ... . -..|+.+..+.
T Consensus 8 g~~~~kPG~sl~LsC~~SG---~---------s~~~y~~~WvRQ-~PGkglEwvg~i~~~~~~~~ya~~~kgRftisrD~ 74 (118)
T d1nlbh1 8 GPELKKPGETVKISCKASG---Y---------TFTDFSMHWVNQ-APGKGLNWMGWVNTETGEPTYADDFKGRFAFSLET 74 (118)
T ss_dssp CCEEECTTCCEEEEEEEES---S---------CGGGSCEEEEEE-CTTSCEEEEEEECTTTCCEEECGGGSSSEEEEEEG
T ss_pred CCceECCCCCEEEEEEEcC---C---------CCCCCceecccc-CCCccceeeeecCcccccchhhhheeeeeEEEecC
Confidence 3456789999999999981 1 112244667764 344444553 1 11 111 1 13566665433
Q ss_pred --CeeEEEeccCCCCCCeeEEEE
Q psy7039 194 --SETVLDIPFCSRSDTGHYSLT 214 (516)
Q Consensus 194 --~~~~l~i~~~~~~d~g~Y~c~ 214 (516)
....|.|.+++.+|++.|.|.
T Consensus 75 s~~tvyL~~~~L~~eDtAvYYCA 97 (118)
T d1nlbh1 75 SASTAYLQINSLKNEDTATYFCA 97 (118)
T ss_dssp GGTEEEEEECSCCGGGCEEEEEE
T ss_pred CceeEEeeeeecccCcceEEEEe
Confidence 345789999999999999995
|
| >d1dn0b1 b.1.1.1 (B:1-120) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]
Probab=95.64 E-value=0.023 Score=42.70 Aligned_cols=80 Identities=14% Similarity=0.204 Sum_probs=48.9
Q ss_pred ceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEe---eCC-e-eecc--CCceEEeec--C
Q psy7039 123 DVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWS---ING-Q-VCQI--GGRADVQTT--K 193 (516)
Q Consensus 123 ~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~---~~~-~-~~~~--~~~~~~~~~--~ 193 (516)
.-.++.|++++|.|.+.+ | .-..+.+.|+.. .|--.+.|. ..+ . .... ..|+.+..+ .
T Consensus 9 ~~~vkPG~sl~LsC~~SG---~---------~~~~y~~~W~RQ-~PGkglewv~~i~~~~~~~y~~~~kgRftiS~D~s~ 75 (120)
T d1dn0b1 9 AGLLKPSETLSLTCAVYG---G---------SFSDYYWSWIRQ-PPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDTSK 75 (120)
T ss_dssp CCEECTTSCEEEEEEEES---S---------CCSSCCEEEEEE-CTTSCCEEEEEECTTCCEEECTTTTTTEEEEEETTT
T ss_pred CcEECCCCCEEEEEEEcc---c---------cCccCcceeeeE-CCCccceeeeeccccccchhccceeeeeEEeccCch
Confidence 345788999999999981 0 112345566664 333334442 111 1 1111 256766643 3
Q ss_pred CeeEEEeccCCCCCCeeEEEEE
Q psy7039 194 SETVLDIPFCSRSDTGHYSLTL 215 (516)
Q Consensus 194 ~~~~l~i~~~~~~d~g~Y~c~~ 215 (516)
....|.|.+++.+|++.|.|..
T Consensus 76 nt~~L~i~~l~~eDtA~YYCAr 97 (120)
T d1dn0b1 76 NQFSLKLSSVTAADTAVYYCAR 97 (120)
T ss_dssp TEEEEEECSCCGGGCEEEEEEE
T ss_pred heecccccccccccccEEEEEe
Confidence 3467999999999999999953
|
| >d1hdmb1 b.1.1.2 (B:88-185) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Class II MHC beta chain, C-terminal domain species: Human (Homo sapiens), HLA-DM [TaxId: 9606]
Probab=95.64 E-value=0.028 Score=41.01 Aligned_cols=86 Identities=10% Similarity=0.088 Sum_probs=0.0
Q ss_pred CCccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCc--CceeeEEeeCCeeeccC---Cce
Q psy7039 113 APRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSE--PFLNHGWSINGQVCQIG---GRA 187 (516)
Q Consensus 113 ~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--p~~~i~W~~~~~~~~~~---~~~ 187 (516)
+|.+.+..... ...++.+.|.|.+. +. +...++|.+|+..+..+ ...
T Consensus 3 PP~V~v~~~~~--~~~~~~~tL~C~~~--------------------------gFyP~~i~v~W~~ng~~~~~~~~~~~~ 54 (98)
T d1hdmb1 3 PPSVQVAKTTP--FNTREPVMLACYVW--------------------------GFYPAEVTITWRKNGKLVMHSSAHKTA 54 (98)
T ss_dssp CCEEEEEECCC--CSSSCSEEEEEEEE--------------------------EEBSSCCEEEEEETTEECCCCCSBCCC
T ss_pred CCEEEEEcCCC--ccCCCcEEEEEEEE--------------------------EEECCCCEEEEEECCEeccCCeEeCce
Q ss_pred EEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEE
Q psy7039 188 DVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASA 226 (516)
Q Consensus 188 ~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~ 226 (516)
.-..++.......-.+..++...|+|.+...........
T Consensus 55 ~~~~dgty~~~s~L~v~~~~~~~ytC~V~H~sl~~p~~~ 93 (98)
T d1hdmb1 55 QPNGDWTYQTLSHLALTPSYGDTYTCVVEHIGAPEPILR 93 (98)
T ss_dssp EECSSSCEEEEEEEEECCCTTCCEEEEEECTTSSSCEEE
T ss_pred EECCCCCEEEEEEeEcCCCCCCEEEEEEEeCCCCCCeeE
|
| >d1rjca1 b.1.1.1 (A:2-127) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Camelid IG heavy chain variable domain, VHh species: Camel (Camelus dromedarius) [TaxId: 9838]
Probab=95.62 E-value=0.021 Score=43.38 Aligned_cols=82 Identities=18% Similarity=0.243 Sum_probs=48.8
Q ss_pred cceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEe---e-C-Ce-eecc--CCceEEeecC
Q psy7039 122 NDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWS---I-N-GQ-VCQI--GGRADVQTTK 193 (516)
Q Consensus 122 ~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~---~-~-~~-~~~~--~~~~~~~~~~ 193 (516)
..-.++.|+++.|.|.+++ +. -....+.|+++ .|---+.|. . + +. .... ..|+.+..+.
T Consensus 7 G~~lvkPg~sl~LsC~~SG---~~---------~s~y~~~WvRQ-~PGkglewl~~i~~~~~~~~y~~~~kgR~tis~D~ 73 (126)
T d1rjca1 7 GGGSVQAGQSLRLSCATSG---AT---------SSSNCMGWFRQ-APGKEREGVAVIDTGRGNTAYADSVQGRLTISLDN 73 (126)
T ss_dssp CCEEECTTCCEEEEEECC----CT---------TTCSEEEEEEE-CTTSCCEEEEEEETTTCCEEECTTTTTTEEEEEEC
T ss_pred CCceECCCCCeEEEEEECC---CC---------CcCCceEeeee-CCCcceEeeeccccccccccccccceeeEEEEecC
Confidence 3456789999999999872 10 11234566664 233334442 1 1 11 1111 2466665443
Q ss_pred C--eeEEEeccCCCCCCeeEEEEEE
Q psy7039 194 S--ETVLDIPFCSRSDTGHYSLTLE 216 (516)
Q Consensus 194 ~--~~~l~i~~~~~~d~g~Y~c~~~ 216 (516)
. ...|.|.+++.+|++.|.|...
T Consensus 74 s~~~~~L~i~~l~~eDTAvYYCAr~ 98 (126)
T d1rjca1 74 AKNTLYLQMNSLKPEDTAMYYCAAD 98 (126)
T ss_dssp --CEEEEEECSCCGGGCEEEEEEEC
T ss_pred CceEEEEEEeccCcccCceeEEEee
Confidence 3 3468999999999999999754
|